# hmmscan :: search sequence(s) against a profile database
# HMMER 3.2.1 (June 2018); http://hmmer.org/
# Copyright (C) 2018 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Methylacidiphilum_fumariolicum_SolV-ASM29741v1/GCA_000297415.1_ASM29741v1_protein.faa
# target HMM database:             /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# output directed to file:         /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Methylacidiphilum_fumariolicum_SolV-ASM29741v1/GCA_000297415.1_ASM29741v1_protein.PFam32-A
# per-seq hits tabular output:     /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Methylacidiphilum_fumariolicum_SolV-ASM29741v1/GCA_000297415.1_ASM29741v1_protein.PFam32-A.tblout
# number of worker threads:        20
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       CCG91168.1  [L=174]
Description: hypothetical protein MFUM_10001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1212.42
//
Query:       CCG91169.1  [L=305]
Description: ATPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-12   45.5   0.0    1.1e-11   44.8   0.0    1.3  1  AAA_5            AAA domain (dynein-related subfamily)
    2.7e-07   31.1   1.0    1.6e-06   28.6   1.0    2.2  1  AAA              ATPase family associated with various cellul
    8.3e-06   26.3   1.1    0.00016   22.1   0.9    2.7  2  AAA_16           AAA ATPase domain
    6.1e-05   22.9   0.0    0.00024   21.0   0.0    1.9  1  AAA_3            ATPase family associated with various cellul
    0.00023   21.0   0.2     0.0016   18.2   0.1    2.2  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0017   18.1   0.2        0.6    9.8   0.1    2.2  2  Sigma54_activat  Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.015   15.3   0.0       0.12   12.4   0.0    2.2  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.032   14.3   0.0      0.086   13.0   0.0    1.6  1  AAA_2            AAA domain (Cdc48 subfamily)
      0.041   13.6   0.0       0.07   12.9   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
      0.055   13.4   0.3       0.15   12.0   0.3    1.9  2  NACHT            NACHT domain
      0.055   12.7   0.1      0.087   12.0   0.1    1.2  1  TIP49            TIP49 P-loop domain
      0.075   12.4   0.3        1.4    8.3   0.2    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.12   12.7   0.2       0.57   10.5   0.0    2.1  2  AAA_22           AAA domain
       0.17   11.5   0.1       0.28   10.9   0.1    1.5  1  AAA_30           AAA domain


Domain annotation for each model (and alignments):
>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0     9e-15   1.1e-11       2     138 .]      53     182 ..      52     182 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 9e-15
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-S CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeg 99 
                 vlL GppG+gK++l + +a+a++++    q+  +  +e+l+   +i+        + +++ +++++ +l+l+E+++a+ +v + Ll  ++e +l ++++
  CCG91169.1  53 VLLDGPPGIGKTFLGKAVAKAIGARHMLFQFFPGCGKEELLRDKSIDgTLVPGIIPLSITSSIENKTVLILNELDKADVSVDSFLLDFINESQLFVPQL 151
                 89*******************************************9544444578888899999*********************************** PP

                 SSEEE---......-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5 100 gelvkaknddllerfrviatanpldrslnelspalrsRf 138
                 g++ ka+n +    + ++ t n+l+    ++++al++R+
  CCG91169.1 152 GGELKANNSN----LLIVITKNDLR----DATEALLRRC 182
                 ********87....99999999999....8889999995 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   1.0   1.3e-09   1.6e-06       1     127 [.      53     185 ..      53     188 .. 0.62

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.3e-09
                 EEEESSTTSSHHHHHHHHHHHHT.....HEEEEEETTTCSSSSTTHHHHHHHHHHHHH.....HHTS..TSEEEEEETGGGHHHHHTTCCCHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg.....vefleisgsellskyvgesekkirelfkea.....keka..kpsilfiDEidalaksrsgseseeeervvn 87 
                 vll GppG+GKT l kavak +g     ++f+   g+e l      + k+i +++         +++  ++++l++ E+d+   s             +
  CCG91169.1  53 VLLDGPPGIGKTFLGKAVAKAIGarhmlFQFFPGCGKEEL-----LRDKSIDGTLVPGiiplsITSSieNKTVLILNELDKADVSV-----------DS 135
                 7999*****************9843333445555555444.....23333333322211111122224457**********97777...........44 PP

                 HHHHHHHHTTTS...........SSTEEEEEEESSGGGSTHHHHSTTSSEE CS
         AAA  88 qLlteldgvkkk...........eskvivigatnrpdkldpallrgRfdrk 127
                  Ll ++++ +             +s+++++++ n+ ++ ++all +R+ ++
  CCG91169.1 136 FLLDFINESQLFvpqlggelkanNSNLLIVITKNDLRDATEALL-RRCRVI 185
                 44444444444444444444444557888888888*********.698765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.9   1.2e-07   0.00016      13     117 ..      38     169 ..      32     183 .. 0.62
   2 ?   -0.5   0.0       1.1   1.4e+03      89     117 ..     248     279 ..     171     298 .. 0.59

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.2e-07
      AAA_16  13 lsalervrsgrp.elvllsGesGvGKsslvrellralekdggif..lrgkcdql..esa...........ipysalaqalareellrqlldeaesaele 95 
                 + a+++  +g+  ++vll G++G+GK+ l +++++a+ +++++f  + g  ++   + +           ip+s+  ++  +  l+  +ld+a+ +  +
  CCG91169.1  38 ECAVHAMGEGSAlSAVLLDGPPGIGKTFLGKAVAKAIGARHMLFqfFPGCGKEEllR-DksidgtlvpgiIPLSITSSIENKTVLILNELDKADVSVDS 135
                 5677777788889***************************87776555444444431.23345556566566655555555555555555555555555 PP

      AAA_16  96 awrekleealaavpelagaea............s 117
                    +++ e+   vp+l g+++            +
  CCG91169.1 136 FLLDFINESQLFVPQLGGELKannsnllivitkN 169
                 5555555555555555555555555555555555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
      AAA_16  89 aesaeleawrekleealaavpelagaea...s 117
                 +++  l +w+++l++ l + p+++  +     
  CCG91169.1 248 HQQMTLLEWSQFLLTGLLPLPQDRKYLDqnpM 279
                 44556777777777777755555555554442 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.9e-07   0.00024       2     113 ..      53     171 ..      52     179 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.9e-07
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeeke....kefefkkGpvfanllladeinrappktqsalleameerqvtvege 96 
                 vll+g PG++kt l ka+aka++++    qf p     ++l  + ++ +       +++++    + +l+ +e+++a   ++s ll+ ++e+q+ v + 
  CCG91169.1  53 VLLDGPPGIGKTFLGKAVAKAIGARHMLFQFFPGCGKEELLRDKSIDGTLvpgiIPLSITSSIENKTVLILNELDKADVSVDSFLLDFINESQLFVPQL 151
                 89*******************************99999888888887766554456777777777889999**********************987655 PP

       AAA_3  97 thkl...pepflvlatqnPi 113
                   +l   ++++l++ t+n +
  CCG91169.1 152 GGELkanNSNLLIVITKNDL 171
                 44441115678888888865 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.3e-06    0.0016      26      60 ..      43      77 ..      24      82 .. 0.82
   2 ?   -0.2   0.0      0.58   7.4e+02      78     110 ..     111     143 ..     104     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-06
      RuvB_N 26 akkreealdhvllyGpPGlGkttlakiiakelgvk 60
                a   ++al  vll GpPG+Gkt l k +ak +g++
  CCG91169.1 43 AMGEGSALSAVLLDGPPGIGKTFLGKAVAKAIGAR 77
                345678999*********************99875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.58
      RuvB_N  78 lltnleekdvlfideihrlsraveevlysamed 110
                 + +++e+k vl ++e+ + + +v+ +l   +++
  CCG91169.1 111 ITSSIENKTVLILNELDKADVSVDSFLLDFINE 143
                 778899999999999999999999888766655 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0058       7.5      23      50 ..      51      78 ..      28      96 .. 0.76
   2 !    9.8   0.1   0.00047       0.6      93     151 ..     117     177 ..     113     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0058
                     S-EEEECSTTSSHHHHHHHHHHHSTTTT CS
  Sigma54_activat 23 lsvlitGesGtGKellaraiheaskrke 50
                     + vl+ G  G GK++l +a+ +a   ++
       CCG91169.1 51 SAVLLDGPPGIGKTFLGKAVAKAIGARH 78
                     68**************999988766554 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00047
                      TTSEEEEETGGGS-HHHHHHHHHHHHHSE..EESBTSSSEEE--EEEEEEESS-HHHHHHT CS
  Sigma54_activat  93 dgGtlfLDeigelplelQekLlrvlqege..vervGsskeikvdvriiaatnedleeavee 151
                      ++ +l L+e+ + ++++ + Ll +++e +  v ++G++ + + +  +i+ t++dl++a e+
       CCG91169.1 117 NKTVLILNELDKADVSVDSFLLDFINESQlfVPQLGGELKANNSNLLIVITKNDLRDATEA 177
                      6789**********************99844579****9999999999999*9**998776 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.2e-05      0.12      19      46 ..      50      77 ..      29      81 .. 0.77
   2 ?   -0.1   0.0      0.67   8.5e+02      91     106 ..     248     264 ..     233     279 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.2e-05
                TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE 19 gdvilLeGdLGaGKTtlvrglakalgve 46
                 +++lL+G+ G GKT l +++aka+g +
  CCG91169.1 50 LSAVLLDGPPGIGKTFLGKAVAKAIGAR 77
                246*********************9875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.67
                 TSCEEEEETGGGG.CCC CS
        TsaE  91 eeavvlvEWpekl.eel 106
                 +++++l EW++ l + l
  CCG91169.1 248 HQQMTLLEWSQFLlTGL 264
                 447999***99852444 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.7e-05     0.086       4     126 ..      51     167 ..      48     177 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.7e-05
                 --EEEE--TTSSHHHHHHHHHHHTT-......-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHH CS
       AAA_2   4 isilllgptgvGktelakalaellfv..kkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLL 100
                 + +ll gp g+Gkt+l ka+a+ + +     + +      ell ++ ++ ++   i+      + e++ ++ l E+dK+              V   LL
  CCG91169.1  51 SAVLLDGPPGIGKTFLGKAVAKAIGArhMLFQFFPGCGKEELLRDKSIDGTLVPGIIPLSITSSIENKTVLILNELDKADV-----------SVDSFLL 138
                 678999*****************995211123334456788888889999999999999**********************...........9999999 PP

                 HHHH--EE-.----..--EE-TT-EEEEE CS
       AAA_2 101 qileggtlt.dkqg..rkvdtknilfImt 126
                   + +++l  ++ g   k + +n l+++t
  CCG91169.1 139 DFINESQLFvPQLGgeLKANNSNLLIVIT 167
                 99999998752333236666777777776 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.4e-05      0.07      49      74 ..      52      77 ..      47     138 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.4e-05
   IstB_IS21 49 nivllGpsGvGKshlaialgveavra 74
                +++l Gp+G+GK++l  a++++  ++
  CCG91169.1 52 AVLLDGPPGIGKTFLGKAVAKAIGAR 77
                68899*************99765444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   0.00012      0.15       3      39 ..      53      84 ..      51     180 .. 0.87
   2 ?   -2.1   0.0       2.4   3.1e+03      35      68 ..     161     195 ..     148     243 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
                EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEE CS
       NACHT  3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFf 39
                v+l G++G+GKT L + +a a+ +++     + + Ff
  CCG91169.1 53 VLLDGPPGIGKTFLGKAVAKAIGARH-----MLFQFF 84
                899******************99998.....455555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.4
                 SEEEEEETTTTTTS-....-HCHHHCCCCTS--SS CS
       NACHT  35 klvFflslrelsrsgna.rsladllfsqlpepaap 68 
                  l+++++  +l++ ++a ++ ++++  ++p  +++
  CCG91169.1 161 NLLIVITKNDLRDATEAlLRRCRVIYMNWPSVEME 195
                 45555555555555555555566666666655554 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   6.8e-05     0.087      51      83 ..      51      84 ..      24      90 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.8e-05
                XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX CS
       TIP49 51 ravLlaGpsgtGktalaiaiskelg.edvpfval 83
                 avLl Gp+g Gkt l  a++k++g +++ f ++
  CCG91169.1 51 SAVLLDGPPGIGKTFLGKAVAKAIGaRHMLFQFF 84
                59***********************667777665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2    0.0011       1.4      24      43 ..      52      71 ..      28      74 .. 0.80
   2 ?    2.7   0.0     0.053        68      19      39 ..      73      93 ..      69     136 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0011
  Mg_chelatase 24 nlllvGppGsGKtmlakrlp 43
                   +ll GppG GKt l k+++
    CCG91169.1 52 AVLLDGPPGIGKTFLGKAVA 71
                  589************99875 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.053
  Mg_chelatase 19 aaGgHnlllvGppGsGKtmla 39
                  a+G  ++l+   pG+GK  l 
    CCG91169.1 73 AIGARHMLFQFFPGCGKEELL 93
                  789**************8664 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00045      0.57       8      29 ..      53      74 ..      48      95 .. 0.82
   2 ?   -2.3   0.0       3.9   4.9e+03      93     116 ..     119     141 ..     111     175 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                +++ G++G+GKT+l + +++  
  CCG91169.1 53 VLLDGPPGIGKTFLGKAVAKAI 74
                7899***********9998765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.9
      AAA_22  93 elliiDEaqhlr.seealeeLrsll 116
                  +li+ E ++ + s  + ++L ++ 
  CCG91169.1 119 TVLILNELDKADvS--VDSFLLDFI 141
                 57777777776432..333333332 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00022      0.28      20      45 ..      52      77 ..      38     152 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
      AAA_30 20 vavltGpAGtGKttalkalreaweaa 45
                 ++l Gp+G GKt++ ka+++a+ a+
  CCG91169.1 52 AVLLDGPPGIGKTFLGKAVAKAIGAR 77
                46899***************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 1885.42
//
Query:       CCG91170.1  [L=81]
Description: hypothetical protein MFUM_100002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 590.03
//
Query:       CCG91171.1  [L=384]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1341  (0.074795); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3007.53
//
Query:       CCG91172.1  [L=327]
Description: DNA-directed RNA polymerase, sigma subunit (Sigma70/sigma32) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-05   23.5   0.0    6.7e-05   22.6   0.0    1.4  1  Sigma70_r2  Sigma-70 region 2


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.8e-09   6.7e-05      26      64 ..     150     188 ..     133     194 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.8e-09
                 HHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHH CS
  Sigma70_r2  26 lvQeaflrlwraverfdpergvsfsawllriarnaaidr 64 
                 + +++ ++++ra+er++p+    f  ++l +++n++  +
  CCG91172.1 150 VFSDGIIGFYRALERYNPSSQNPFPNYALYWIKNEIASE 188
                 6789*******************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1101  (0.0614089); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2632.37
//
Query:       CCG91173.1  [L=57]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 413.03
//
Query:       CCG91174.1  [L=300]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.8   2.9       0.18   12.2   2.9    1.2  1  PBP_dimer  Penicillin-binding Protein dimerisation domain


Domain annotation for each model (and alignments):
>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.9   9.9e-06      0.18      16      96 ..     195     276 ..     192     292 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.9e-06
                 EEEEEEEEEE..EEEEESSS-HHHHHHHHHHHHHHC.HHHTTS-HHHHHHHHCCCCTSSTTSCECCCCCEECHHHCCCHHHHHC CS
   PBP_dimer  16 lLAtnrpsyt..ltitpsklkkkkalekikklakll.eseenldderleelalkknsykaykpvviaediseeevarikenakd 96 
                 +LA+ ++  +   ++++ +++k+ka +ki++l +l  e e++   ++l ++++k++s ++ ++v     +s+ee+a+ ken+ +
  CCG91174.1 195 ILAQQQEIQNlkSSLLEYSVSKDKAVKKIEELQNLCfEMEKS-R-DQLLKDIHKMRSESRLNQVSDLYRLSNEELAKTKENRIR 276
                 5666555444114566778899999999********664444.3.45555699**************************99755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1401  (0.0781416); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2124.11
//
Query:       CCG91175.1  [L=185]
Description: membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   15.5   1.9       0.02   15.1   1.9    1.4  1  RDD       RDD family


Domain annotation for each model (and alignments):
>> RDD  RDD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   1.9   1.1e-06      0.02      50     109 ..      42     106 ..      20     167 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-06
         RDD  50 llllvlllvllvyqllllskkgqTlGklllglkvvdedgrklglaqaliRalllllllv.......l 109
                  ll+v+++  + + ++ ++k ++ ++ +++g k++   + k++l++a+ R +l l++ +       +
  CCG91175.1  42 TLLFVFPFFYFCWCVFWEWKIQSRPFHWIMGQKIIA--ENKMDLKRAVYRGVLRLFFPFiflgfskV 106
                 456666666677777777778999***********9..889*********99877765444333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1287.01
//
Query:       CCG91176.1  [L=132]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.091   12.8   0.1       0.16   12.0   0.1    1.4  1  Pox_A31   Poxvirus A31 protein


Domain annotation for each model (and alignments):
>> Pox_A31  Poxvirus A31 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   8.8e-06      0.16      63      89 ..       1      26 [.       1      45 [. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.8e-06
     Pox_A31 63 lGkviindvkllllymdleyyGislaG 89
                +Gk+iin   l +++ +l+y G s++ 
  CCG91176.1  1 MGKIIINRLSL-FFFFNLFYTGCSIQS 26
                69****99876.6778*******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 962.13
//
Query:       CCG91177.1  [L=169]
Description: hypothetical protein MFUM_100009 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1277.79
//
Query:       CCG91178.1  [L=46]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.02   14.8   0.0       0.02   14.8   0.0    1.1  1  IBN_N     Importin-beta N-terminal domain


Domain annotation for each model (and alignments):
>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.1e-06      0.02      37      72 ..       5      40 ..       1      42 [. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-06
                HHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHH CS
       IBN_N 37 lyLknlitkhWsdeeekqslpseekeqIrnnllnll 72
                l +++++ k+ + e  + +lp+e keqIr +l   l
  CCG91178.1  5 LAFEKSVGKKIKFEFSNIQLPKEKKEQIRATLTCFL 40
                677788888866555555*************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 375.31
//
Query:       CCG91179.1  [L=191]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.038   13.3   0.9      0.096   12.0   0.5    1.7  2  DUF3810   Protein of unknown function (DUF3810)


Domain annotation for each model (and alignments):
>> DUF3810  Protein of unknown function (DUF3810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   5.3e-06     0.096      60     139 ..       6      89 ..       1     103 [. 0.61
   2 ?   -0.8   0.0     0.043   7.7e+02      75      91 ..     148     164 ..     140     184 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.3e-06
     DUF3810  60 llrvllvllvvyflftllwglnYyreplserlglkkeeyseeelaelaeklveklnel.......reqverdeeevrkeakkaykkl 139
                 l+  ++++l+++++f     + Y +++ s++l+++ke +++   ++ ++++v++ ++        +++v++++e +  ++ + +++ 
  CCG91179.1   6 LRVSFFICLLALAWFFSELLISYVQQETSKKLNMEKEYEQA---QNYIQRVVKQEKKArdskiwyESRVKQNTETILIDVLSRFQRQ 89 
                 455577889999********************995444444...4455555555444422234443344444444544455555444 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.043
     DUF3810  75 tllwglnYyreplserl 91 
                  l++ + Y+r++++++ 
  CCG91179.1 148 ALNCEFIYKRNSFEQSQ 164
                 589999*****999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1904  (0.106197); expected 358.6 (0.02)
Passed bias filter:                      855  (0.0476881); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 1239.06
//
Query:       CCG91180.1  [L=219]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1747.12
//
Query:       CCG91181.1  [L=218]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1568.00
//
Query:       CCG91182.1  [L=247]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1524.43
//
Query:       CCG91183.1  [L=476]
Description: membrane-bound serine protease, NfeD family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-12   45.9   0.5    1.9e-11   44.2   0.5    2.0  1  NfeD           NfeD-like C-terminal, partner-binding
    3.5e-06   26.2   0.1    5.6e-06   25.6   0.1    1.4  1  SDH_sah        Serine dehydrogenase proteinase
    0.00037   20.4   0.1    0.00059   19.8   0.1    1.2  1  CLP_protease   Clp protease
  ------ inclusion threshold ------
      0.099   12.2   0.2        1.5    8.3   0.0    2.2  2  Peptidase_S41  Peptidase family S41


Domain annotation for each model (and alignments):
>> NfeD  NfeD-like C-terminal, partner-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.5   4.2e-15   1.9e-11       2      83 ..     378     468 ..     374     469 .. 0.75

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 4.2e-15
                 XXXXXXXXXXXXXXXS---S....SS--S......S---G.GTTSEEEEEE-BS.-EEEEETTEEEEEE-.SS.B-TT-EEEEEEE-SSSEEEE CS
        NfeD   2 favvsvlllvllrplllkkl....kkkek.....ktnaea.liGkegvvledig.tGrvkvdGeeWsarsege.iekgerVrVveveGltliVe 83 
                 ++  ++ll++++ +++ k+     +   k     + ++++  +G+eg++++ ++ +G  +++G+  +++s ge i++g+++r+v++eG++++Ve
  CCG91183.1 378 AIGSAFLLIFAFSRFIPKRVsiawN---KepqqkNERTDElFVGMEGQAVTVLRpSGLGRFKGKVVDVVSLGEfIAEGTPIRIVRIEGIRIVVE 468
                 3334445555555777776644432...1334432334456**********99668***************9*********************8 PP

>> SDH_sah  Serine dehydrogenase proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   1.3e-09   5.6e-06      72     167 ..      50     148 ..      32     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.3e-09
     SDH_sah  72 fitiedseevlrairltpkdkpidlii..htpGGlvlaatqiakalkehk..aktrvivphyamsGGtlialaadeiildenavlGpvdpqlgqypaas 166
                  i+      v r +  + k   idlii   tpGG + + ++i + ++  +   +t   v h a s G+++a a  +i + + +v+G   p +   p   
  CCG91183.1  50 EIEQTMVYVVKRGVNEAIKSGAIDLIIdlNTPGGQAESMEKIIQQIERFPfqENTFAFVNHKAYSAGAFVAAACRHIYMAPGSVIGAATPVM-FSPQGG 147
                 5555555567788999999999****9446****************998722567889****************************999954.345555 PP

     SDH_sah 167 i 167
                 i
  CCG91183.1 148 I 148
                 4 PP

>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   1.3e-07   0.00059      47     164 ..      72     191 ..      42     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.3e-07
                   S-EEEEEEE--B-HHHHHHHHHHHHHSSS-EEEEEE..EEEETHHHHHHHTS-TTGEEEETTEEEEES-TEEEE.EEEHHHH.HHHHHHHHHHHHHH CS
  CLP_protease  47 kdillyinspGGsvtaglaIydtmqyikpdvsticl..GlaaSmgslllaagekgkRfalpnarimihqPlgga.qgqasdi.eieaeellkikerl 139
                    d+ + +n+pGG+ +++  I   ++    +  t+++    a S+g++++aa  +   ++ p + i    P+    qg  +++ e + +++l   + l
    CCG91183.1  72 IDLIIDLNTPGGQAESMEKIIQQIERFPFQENTFAFvnHKAYSAGAFVAAACRHI--YMAPGSVIGAATPVMFSpQGGIQNLpESYEKKILSAYQGL 166
                   4667778******************997776666554489***********9999..89999999988886654256777773567789******** PP

                   HHHHHHHHTS-HHHHHHHHCSTEEE CS
  CLP_protease 140 neilakhtgqslekiekdldrdtfl 164
                   ++ +a++ g+++  +++ +drd  l
    CCG91183.1 167 IRAIAERHGHNPAVFNAMVDRDSGL 191
                   **********************865 PP

>> Peptidase_S41  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.021        94      19      54 ..      60      94 ..      49      99 .. 0.81
   2 ?    8.3   0.0   0.00034       1.5      83     119 ..      97     135 ..      80     151 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.021
                   HHHHHHHHHTTSSEEEEE-TTB-EBEHHHHHHHHHC CS
  Peptidase_S41 19 akalkelkkknvkglilDlRnNgGGlldeavelasl 54
                   ++ ++e  k+++  li+Dl n +GG+ +++ ++++ 
     CCG91183.1 60 KRGVNEAIKSGAIDLIIDL-NTPGGQAESMEKIIQQ 94
                   55567777789999*****.789**99999888875 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00034
                    TT-BSSEEEEEE-TTBBTHHHHHHHHHHHTTSE..EEEE CS
  Peptidase_S41  83 evqykgplvvLvnegsaSaseifagalkdngra..tlvG 119
                    ++ ++ + +  vn++ +Sa+ ++a+a+++   a   ++G
     CCG91183.1  97 RFPFQENTFAFVNHKAYSAGAFVAAACRHIYMApgSVIG 135
                    66788899999*****************98776334666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3342.03
//
Query:       CCG91184.1  [L=41]
Description: hypothetical protein MFUM_1010001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       106  (0.00591221); expected 358.6 (0.02)
Passed bias filter:                       99  (0.00552178); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 331.07
//
Query:       CCG91185.1  [L=156]
Description: membrane-bound serine protease, NfeD family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-10   40.4   0.3    4.8e-10   39.7   0.3    1.4  1  NfeD      NfeD-like C-terminal, partner-binding


Domain annotation for each model (and alignments):
>> NfeD  NfeD-like C-terminal, partner-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.3   2.7e-14   4.8e-10       4      83 ..      60     151 ..      52     152 .. 0.70

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 2.7e-14
                 XXXXXXXXXXX..XXS---SSS--S.........S---.G.GTTSEEEEEE-BS.-EEEEETTEEEEEE-.SS.B-TT-EEEEEEE-SSSEEEE CS
        NfeD   4 vvsvlllvllr..plllkklkkkek........ktnae.a.liGkegvvledig.tGrvkvdGeeWsarsege.iekgerVrVveveGltliVe 83 
                 v  vlll+++    ++ k+  kk+         + + e + ++Gkeg+  ++ +  G v++d ++ +a+se + ie+g +++Vv+++  ++iV+
  CCG91185.1  60 V--VLLLIFWLgiVVFPKTGLKKKMellvtnkeEEGNEtNlYLGKEGRCESPCKpHGFVRIDSKRVEAVSETGyIEEGVKIKVVGIREGKAIVR 151
                 3..34444444333333333222223444433423333445************547**************9999*******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1164.23
//
Query:       CCG91186.1  [L=348]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-151  504.4  13.1   1.3e-151  504.1  13.1    1.0  1  YdfA_immunity  SigmaW regulon antibacterial
  ------ inclusion threshold ------
      0.011   16.0   3.1      0.017   15.3   3.1    1.3  1  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain
       0.11   12.2   2.6       0.21   11.3   2.6    1.4  1  TadF           Putative tight adherence pilin protein F
       0.63   10.5   3.5        1.3    9.5   3.5    1.4  1  V-SNARE        Vesicle transport v-SNARE protein N-terminus


Domain annotation for each model (and alignments):
>> YdfA_immunity  SigmaW regulon antibacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  504.1  13.1  2.8e-155  1.3e-151       2     313 ..      21     341 ..      18     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: 504.1 bits;  conditional E-value: 2.8e-155
  YdfA_immunity   2 iivlvvvlvlllvllkfvpvglwisallsgvkvsllelvgmrlrkvkpkvivealikatkaGlelsvneleahylagGnvekvvkaliaaekanie 97 
                    +++l+v+l++ ++l++f+  glw++a+++g+ vsll+lv+mrlr ++p+ iv+++i+a+++Gl++s+++le+hylagGnve+vv+al+aa++a i+
     CCG91186.1  21 VFLLIVLLIVAAILFNFI--GLWVKAMITGAAVSLLNLVAMRLRGIPPSLIVNTRITAVRSGLSISTAQLESHYLAGGNVEHVVRALVAADRAGIP 114
                    456677778888888998..**************************************************************************** PP

  YdfA_immunity  98 lsferaaaidla....grdvleavqvsvnPkvietp.......kvaavakdGiqlkvkarvtvranierlvGgageetiiarvGegivttiGsaes 182
                    l+f+ra+aidla    g++v+eav++svnPkvi++p       ++a+vakdGi +k+karvtvr+n+er+vGga+eetiiarvGegivttiG a++
     CCG91186.1 115 LTFNRACAIDLAtigtGKSVFEAVRTSVNPKVIDCPfqvggptYIAGVAKDGITVKAKARVTVRTNLERFVGGATEETIIARVGEGIVTTIGMANT 210
                    ************9999******************************************************************************** PP

  YdfA_immunity 183 hkevlenPdsisktvlekgldagtafeilsidiadvdvgenigaklqadqaeadkkiaqakaeerramavakeqemkakvqemrakvveaeaevPk 278
                    +kevle+Pd+isk vl+kgld+gtafeilsidia+v +g+n+gaklqa+qaeadk++aqakae rra+ava eqemkakv+emrakvveae+++P+
     CCG91186.1 211 YKEVLEHPDRISKIVLQKGLDSGTAFEILSIDIAEVIIGDNVGAKLQAEQAEADKRVAQAKAEVRRAAAVALEQEMKAKVEEMRAKVVEAESQIPL 306
                    ************************************************************************************************ PP

  YdfA_immunity 279 alaealregklgvldyyklkniqadtemresiake 313
                    a++ea+++g lgv+dyy+l+niqadt+mr si++e
     CCG91186.1 307 AISEAFKKGYLGVMDYYRLRNIQADTQMRASISGE 341
                    ********************************976 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   3.1   3.8e-06     0.017       7      97 ..     214     304 ..     210     310 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.8e-06
                   HHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   7 irenpeavkeklkkRgedkadvdelleldekrrelqvel.eelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleael 97 
                   + e+p+ + + + ++g d+ +  e+l++d +   +   +  +lqae+ e+ k +++ak++   +++ +a  +e+k++++++ a++ e+e+++
    CCG91186.1 214 VLEHPDRISKIVLQKGLDSGTAFEILSIDIAEVIIGDNVgAKLQAEQAEADKRVAQAKAEV-RRAAAVALEQEMKAKVEEMRAKVVEAESQI 304
                   568999999999999999999999999998888887666368****************995.9999999*******************9987 PP

>> TadF  Putative tight adherence pilin protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.6   4.7e-05      0.21       2      31 ..       5      34 ..       4      62 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.7e-05
        TadF  2 llkkqrGsvtielalvllflsllliflvdv 31
                ll++++G ++i  +l++++l++lli+ + +
  CCG91186.1  5 LLNNKQGDFVISWILIVFLLIVLLIVAAIL 34
                789*********************987654 PP

>> V-SNARE  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.5   0.00029       1.3      28      76 ..     254     303 ..     251     304 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00029
     V-SNARE  28 reiekkldeaeelldqMelEvrnlps.serasykaklreykselkklkke 76 
                 +++++++ ea++ + q   Evr +++ +  +++kak++e ++++ +++ +
  CCG91186.1 254 AKLQAEQAEADKRVAQAKAEVRRAAAvALEQEMKAKVEEMRAKVVEAESQ 303
                 57899*****************99555****************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1637  (0.0913046); expected 358.6 (0.02)
Passed bias filter:                      774  (0.0431703); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 2150.95
//
Query:       CCG91187.1  [L=177]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.24   11.3   0.0    1.4  1  JSRP      Junctional sarcoplasmic reticulum protein


Domain annotation for each model (and alignments):
>> JSRP  Junctional sarcoplasmic reticulum protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.3e-05      0.24      21      60 ..      27      68 ..      21      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.3e-05
        JSRP 21 avLgsgfqllhdavrGeaevee..raPepwvppssarrepas 60
                 +L +++q++ ++ rG++  +   r+P pw + ++ ++e+ s
  CCG91187.1 27 FLLLVALQVFYGLRRGRKSKTSssRVPFPWEKEKQPPEEKHS 68
                58999***********99887777*******99999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1298.60
//
Query:       CCG91188.1  [L=471]
Description: copper efflux pump membrane fusion protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-54  184.1   0.0    2.1e-53  180.7   0.0    2.1  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    3.4e-16   59.9   0.0    4.8e-15   56.2   0.0    2.6  3  HlyD_3           HlyD family secretion protein
    3.3e-06   26.9   0.0    8.1e-06   25.6   0.0    1.7  1  HlyD             HlyD membrane-fusion protein of T1SS
  ------ inclusion threshold ------
       0.09   12.6   0.0         11    5.9   0.0    3.7  4  Biotin_lipoyl_2  Biotin-lipoyl like


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.7   0.0   4.7e-57   2.1e-53       2     214 .]     111     345 ..     110     345 .. 0.90

  Alignments for each domain:
  == domain 1  score: 180.7 bits;  conditional E-value: 4.7e-57
                 SXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXX........XXXXXX CS
    HlyD_D23   2 lsktlravGtvayderrlarvsarv.eGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalk.........akkklkkke.......lleaar 83 
                 l+ +++a++ v+++e+++++++ ++ +G++ kly+n++g++ +kG++La++ s+++v+aq +y++a +         +       +       ++   r
  CCG91188.1 111 LKLEIKAPAIVSINESKIYDINVKAgNGYIIKLYANYVGKHFSKGETLATILSQDWVQAQMDYIKAYRawrrsllvkK-------DnpilldqQFYHIR 202
                 66789******************9857*****************************************6554444333.......1566666699**** PP

                 XXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  84 erLrllgvseeqiaelek............tgkvqktvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtve 170
                 +rLr+++++e+qi+elek             + ++ t+++++pi+G + eknv eG+y+++g++l++i  l++VW+ ae++e q++++++g + +++++
  CCG91188.1 203 ARLRVWDLNEDQIRELEKyawsmsvndvrtAKGIRGTFELRSPIEGHIHEKNVYEGMYFTAGQSLLKIVGLQDVWILAELPEDQARYIAIGLPCQISFP 301
                 **************99874443333333324668889************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 171 alpgktfeGkvdyiyptvdpetRtvkvRieldNpdgkLkpgmfA 214
                 alp+ktfe+k+d+i+p+  +etR ++vR++l+Np++ L pgm+A
  CCG91188.1 302 ALPEKTFEAKIDFIQPHFAEETRRLQVRVVLPNPHHILHPGMYA 345
                 *******************************************8 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2   5.2e+03      41      60 ..      90     109 ..      88     137 .. 0.61
   2 ?   -0.3   0.0      0.38   1.7e+03      17      38 ..     148     169 ..     127     180 .. 0.78
   3 !   56.2   0.0   1.1e-18   4.8e-15       2     106 .]     242     342 ..     241     342 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
      HlyD_3  41 kvpaadlgsikkkgqkvtlk 60 
                 ++p+++l+ i +   +v+++
  CCG91188.1  90 FIPPERLQAIGVRTEEVQVR 109
                 56666666666445555544 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.38
      HlyD_3  17 egevvqagdelleiippdtllv 38 
                 +g+  ++g++l++i+ +d +++
  CCG91188.1 148 VGKHFSKGETLATILSQDWVQA 169
                 67778999*****998775554 PP

  == domain 3  score: 56.2 bits;  conditional E-value: 1.1e-18
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktgaykvevslenpekks 100
                 lr+p+ G+++e+nv eg + +ag+ ll+i+  +++++ a++p+++++ i+ +g + ++ +   +++t ++ki+ i p + ++t++++v+v l+np    
  CCG91188.1 242 LRSPIEGHIHEKNVYEGMYFTAGQSLLKIVGLQDVWILAELPEDQARYIA-IGLPCQISFPALPEKTFEAKIDFIQPHFAEETRRLQVRVVLPNP---H 336
                 8************************************************6.*******************************************9...5 PP

      HlyD_3 101 iplkpG 106
                   l+pG
  CCG91188.1 337 HILHPG 342
                 666666 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.8e-09   8.1e-06      12      79 ..     103     410 ..      15     411 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.8e-09
                 E.................................................................................................. CS
                 x.................................................................................................. RF
        HlyD  12 a.................................................................................................. 12 
                 +                                                                                                  
  CCG91188.1 103 Teevqvrklkleikapaivsineskiydinvkagngyiiklyanyvgkhfskgetlatilsqdwvqaqmdyikayrawrrsllvkkdnpilldqqfyhi 201
                 055555555555555555555555555555555555555555666666666666666666667777777777777777777777777777777777777 PP

                 ..................................................................................EEEEEEEECEEEEEEEG CS
                 ..................................................................................xxxxxxxxxxxxxxxxx RF
        HlyD  13 ..................................................................................etdldqvrvgqpvevrf 29 
                                                                                                   e + +++++g+p ++ f
  CCG91188.1 202 rarlrvwdlnedqirelekyawsmsvndvrtakgirgtfelrspieghiheknvyegmyftagqsllkivglqdvwilaelpEDQARYIAIGLPCQISF 300
                 77777777777777777777777777888888888888888888888888888888888888888888888888888999999**************** PP

                 CGEEECTTTSEEEEEEECTSB...............................................................EEEEEEEEEEEETTE CS
                 xxxxxxxxxxxxxxxxxxxxx...............................................................xxxxxxxxxxxxxxx RF
        HlyD  30 dAfpqtktgkftgvVvgispd...............................................................rvpvrvvvekaqgpy 65 
                  A+p +   +f+++++ i+p                                                                 +p+ v+++++ ++y
  CCG91188.1 301 PALPEK---TFEAKIDFIQPHfaeetrrlqvrvvlpnphhilhpgmyadfkttidfgtrlavaedaviptgeryvvfldhggghLEPKFVEIGDKIEGY 396
                 ******...9***************************************************************************************** PP

                 EEESSSS-TTEEEE CS
                 xxxxxxxxxxxxxx RF
        HlyD  66 yplriglkagalvr 79 
                 y++r g+k+g++v+
  CCG91188.1 397 YIVRGGVKEGDRVV 410
                 ************97 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.32   1.4e+03      25      31 ..      33      39 ..      33      40 .. 0.90
   2 ?   -0.7   0.0      0.29   1.3e+03      21      37 ..     149     165 ..     148     171 .. 0.81
   3 ?    5.9   0.0    0.0025        11       5      33 ..     242     270 ..     239     270 .. 0.91
   4 ?    0.0   0.2      0.17   7.8e+02      14      24 ..     399     409 ..     387     412 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.32
  Biotin_lipoyl_2 25 kaGdvLa 31
                     k+Gd+L+
       CCG91188.1 33 KKGDILY 39
                     9*****8 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.29
  Biotin_lipoyl_2  21 GqrVkaGdvLaelDsra 37 
                      G++  +G +La++ s++
       CCG91188.1 149 GKHFSKGETLATILSQD 165
                      677789******97776 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0025
  Biotin_lipoyl_2   5 IaapvsGrVaqlnVkdGqrVkaGdvLael 33 
                      + +p+ G +++ nV +G++  aG+ L+ +
       CCG91188.1 242 LRSPIEGHIHEKNVYEGMYFTAGQSLLKI 270
                      679*********************99876 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.17
  Biotin_lipoyl_2  14 aqlnVkdGqrV 24 
                      ++  Vk+G+rV
       CCG91188.1 399 VRGGVKEGDRV 409
                      55569****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3158.00
//
Query:       CCG91189.1  [L=1069]
Description: Copper efflux pump [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-220  734.1   0.0   2.5e-220  733.9   0.0    1.0  1  ACR_tran  AcrB/AcrD/AcrF family
  ------ inclusion threshold ------
       0.13   11.2  15.9      0.007   15.3   2.4    2.7  2  MMPL      MMPL family


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  733.9   0.0  2.8e-224  2.5e-220       7    1020 ..      11    1052 ..       5    1053 .. 0.97

  Alignments for each domain:
  == domain 1  score: 733.9 bits;  conditional E-value: 2.8e-224
                  TSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS-HHHHH CS
    ACR_tran    7 krpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtdidiAr 103 
                  + p ++l++++  l lG +s+ ++P+da+P+++ ++v v t+ pG sp  ve+++t+p+   +   + +k v+ +S  g+s + + Fedgtd++ Ar
  CCG91189.1   11 ENPFVVLLFVFFSLCLGLYSVAHVPLDAIPDLSDVQVIVYTEWPGRSPTLVEDQITYPISTRFISAPKVKFVRGESMFGKSFVYVIFEDGTDLYWAR 107 
                  5789999****************************************************************************************** PP

                  HHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHHHCTT--H CS
    ACR_tran  104 qqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqklaklgltl 200 
                    v + l++++++LP +v +p++ ++ t+ + ++++ +  ++g+ t  elr +++++++  Ls+v+GV+++  +Gg+ +++++++dp+kl ++g+  
  CCG91189.1  108 SRVLEYLNSVRSSLPANV-NPTLGPDATGVGWVYEYVLLDTSGKHTLSELRSFQDWTLRYALSSVHGVSEIASFGGYVRQYQVNIDPNKLLAYGIRF 203 
                  ******************.****************************************************************************** PP

                  HHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEE.ETTSCEEEHHHCEEEEEEESSSSSEEEETT.EEEEEEEEEEETTSBHHHH CS
    ACR_tran  201 tdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivk.nqdgskvrlrDvAkVelgaeeerlaatfng.kpavllevkklpganaiev 295 
                  ++vv+a+++ n++v++ +le ++ e+ ir +g + + edi +++vk + +g +v ++ +++ ++g + + ++  +ng  +av++ v ++ g+na++v
  CCG91189.1  204 DEVVQAIQKSNQDVGGKSLEVSTVEFYIRGKGYFRNLEDISQVVVKrDRQGFPVVVNQLGDLTIGGDIRFGVTDYNGiGEAVGGIVIMRYGENALQV 300 
                  **********************************************9******************************99****************** PP

                  HHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHHHHHH CS
    ACR_tran  296 akavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNlltLfgLv 392 
                  ++ +k+k+++L++s+P+gv++v+vydr+e++ +sie+ +k+L+e  ++v  v  +FL  lr++lip  ++P ++++ f+  + + +++N ++L+g++
  CCG91189.1  301 INGIKKKIKSLEPSFPQGVKLVPVYDRSELIYKSIETLKKKLFEECLIVSAVCVVFLWHLRSSLIPIFMLPAAVILSFIPFSSFHLTANIMSLGGIA 397 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHH.HTS-H.........HHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  393 lAiGlvvDdAiVvvEnierklee.egekp.........leaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlval 479 
                  +AiG ++D Ai++vEn +r lee +             +e  lk++++++++l ++ lv+++ flPi++l+  eG+lf+++a+t  +++  + l+++
  CCG91189.1  398 IAIGAMIDAAIIMVENAHRSLEEyR-ILTgndpkgnirKELLLKASQNVGRPLFFSLLVITVSFLPIFALEAQEGRLFKPLAFTKTFSMFFASLLSI 493 
                  **********************953.43347889***99999******************************************************* PP

                  CCHHHHHHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB-HHHH CS
    ACR_tran  480 tltPalcallLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgvsleqt 576 
                  tl+Pal   +++ +  +++k      n + ++l   Y+++le+ l+hr +vl++al++l+ +++ ++r++ ef+P ++eg ++ +  + pg+s++++
  CCG91189.1  494 TLVPALMNYFIRGKIIPEQK------NPINRFLFFLYKPVLEQALKHRVIVLVLALLILLSTYYPLSRLGAEFMPPLNEGTILYMPTAVPGISISEA 584 
                  ****************9996......8888888899************************************************************* PP

                  HHHHHHHHHHHHTTTTEEEEEEEECECS.SE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSSSCEEEE CS
    ACR_tran  577 qkvlkqvekilkekpevesvfavtGfae.sgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletlsgvrse 672 
                  ++ l+  + +l  +pevesvf + G a  ++d a+ +++++ i+Lkp++++  +  + ++li++++++l+ +pg++  +  piq r++  ++g+rs 
  CCG91189.1  585 ERFLNLQDRYLMTFPEVESVFGKSGQADtATDPAPLSMTETIINLKPKDQW-RKGMNWDKLIAEMNQKLH-FPGVANVFWMPIQTRIQMLTTGFRSV 679 
                  ****99999*****************99999********************.55667899********95.8999999999**************** PP

                  EEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE-GGGS CS
    ACR_tran  673 lqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvrleedlr 769 
                  l  k+fg+dle+L+++ e++ ++l e+pe  +   e  e+ +++++ + r+k+ar+G++++d+n+t+e a+gg+ v++ ie+ +r+ v+vr + d+r
  CCG91189.1  680 LGIKIFGKDLEELNRLGEKIEKVLLEMPETRSAYAERIEGGNYIDIIVRRDKLARYGLTVEDVNQTIEGAIGGNTVTTTIEGRERYPVNVRYHRDFR 776 
                  ************************************************************************************************* PP

                  SSGGGGCCSEEEETTSC.................EEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEE CS
    ACR_tran  770 sspedlkklkvrnkkgk.................mvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtie 849 
                  +++  l+++ v+ +                     +pls+v+ i++++gp+ +  en + +  +  + +++d+ + +++a +ki +++++p+g++ie
  CCG91189.1  777 KDVASLSRILVPLPPQAslqkqmsgnptmaiassQIPLSEVTDIRYRQGPPLVRSENAQLVNFVFVDTPAKDLVGYIKKAGQKIGTTISFPPGYYIE 873 
                  ************9988789999*************************************************************************** PP

                  EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
    ACR_tran  850 wtgqaeqeqeasnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrek 946 
                  w+g+ e + +a+ ++++l++l+l+++f+++ +   sl+++l++ll  P++lvGa+  l++ + +lsv+++vGli+l G+ +  +++++ +  ++  +
  CCG91189.1  874 WAGSYEYFLRAKAKFSLLIPLTLFIIFVLIYFNTHSLKKTLIVLLAFPFSLVGAFWFLYILNYNLSVAVAVGLIALAGIDAETGVIMLLYLDHAFME 970 
                  ***************************************************************************************9776554433 PP

                  TTT........CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  947 egk........sleeaileaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlv 1020
                   +k        +l +a+ e+a  R+rP +MT +a+++G+lP++ s+ +G+++ + ++  ++gG++ts +L L + Pv+++ +
  CCG91189.1  971 AKKtgkmgsmaDLLDAVKEGAAGRIRPKIMTVCAILFGLLPILWSQETGADVMKRIAAPMVGGVITSALLELIIYPVIFIYL 1052
                  222111122226789****************************************************************976 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   2.4   7.8e-07     0.007     152     306 ..     348     507 ..     339     527 .. 0.74
   2 ?    0.4   5.8     0.027   2.5e+02     146     207 ..     889     950 ..     882     952 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.8e-07
        MMPL 152 tlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgl.lvvlliavGtDYallLvsRyreelaa..........gedreea 239
                 ++  + v+ l  +rS ++++ +l  +v+  ++ +++         + l+  +++l  ++++i++ +D a+++v   +  l++          g  r+e 
  CCG91189.1 348 IVSAVCVVFLWHLRSSLIPIFMLPAAVILSFIPFSS---------FHLTANIMSLgGIAIAIGAMIDAAIIMVENAHRSLEEyriltgndpkGNIRKEL 437
                 556666777777777777777777777766666666.........344444444545789999999999999998887665322233222225566778 PP

        MMPL 240 viravastgkvvtaaGltvaiamlg...LvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGraa 306
                 + +a + +g+  +++ l++ +++l    L + + + ++ ++++   +++++ l+++Tl+PAl+ ++ r +
  CCG91189.1 438 LLKASQNVGRPLFFSLLVITVSFLPifaLEAQEGRLFKPLAFTKTFSMFFASLLSITLVPALMNYFIRGK 507
                 899*******************965333889999*****************************9987766 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.027
        MMPL 146 klievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgll 207
                  l++ +tl +i+v+    + Sl   l++ll   +sl+ a+ +++il+++l ++++   ++l+
  CCG91189.1 889 SLLIPLTLFIIFVLIYFNTHSLKKTLIVLLAFPFSLVGAFWFLYILNYNLSVAVAVGLIALA 950
                 678899*******************************************9999988777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1069 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       871  (0.0485805); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.44
# Mc/sec: 7296.16
//
Query:       CCG91190.1  [L=135]
Description: hypothetical protein MFUM_1010008 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.011   14.3   0.3       0.02   13.4   0.2    1.4  2  Cytomega_UL84  Cytomegalovirus UL84 protein


Domain annotation for each model (and alignments):
>> Cytomega_UL84  Cytomegalovirus UL84 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   1.1e-06      0.02      30      55 ..      27      52 ..      21      57 .. 0.86
   2 ?   -2.8   0.0     0.087   1.6e+03     305     327 ..      97     119 ..      81     127 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.1e-06
  Cytomega_UL84 30 srhsgkcrrqrralstppltflattt 55
                   s   g crr rrals pp+ + att 
     CCG91190.1 27 SNRIGACRRVRRALSFPPVIMAATTN 52
                   66789**************9999986 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.087
  Cytomega_UL84 305 rvrhalcwhrveggisgprglts 327
                      ++al w +v   +sg  gl+ 
     CCG91190.1  97 TSHYALFWPKVLVYLSGGGGLAN 119
                    34456666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1020.65
//
Query:       CCG91191.1  [L=101]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-19   70.4   0.0    1.6e-19   70.3   0.0    1.0  1  DUF883         Bacterial protein of unknown function (DUF883)
  ------ inclusion threshold ------
      0.024   14.9   0.0      0.031   14.5   0.0    1.2  1  Spc24          Spc24 subunit of Ndc80
      0.044   14.5   0.1      0.062   14.0   0.1    1.4  1  RecG_N         RecG N-terminal helical domain
       0.18   12.0   0.1        1.9    8.7   0.1    1.9  2  Atypical_Card  Atypical caspase recruitment domain
          2    9.0  10.6       0.86   10.2   1.9    2.8  2  YtxH           YtxH-like protein


Domain annotation for each model (and alignments):
>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   4.5e-23   1.6e-19       2      94 .]       9     101 .]       8     101 .] 0.98

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 4.5e-23
      DUF883   2 eleaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVrenPwqavGiAagvGlllGlLlarR 94 
                 +l ++++++l+d++ llk++a + ge+++++ +rl+ +l+++r+ l++ e+ ++++ake a+++d+++r+nP+q++Gi++ vG+ +G++l r+
  CCG91191.1   9 KLVNDIKAVLHDADILLKTTAGDIGEKTKDAIDRLNTKLNSLRDYLSNSEDWLVDKAKERAKNTDEIIRKNPYQSIGISLLVGIAIGIILGRK 101
                 7899**************************************************************************************996 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   8.6e-06     0.031      15      67 ..      35      88 ..      25      98 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.6e-06
       Spc24 15 dleselesleselaelkeeleeleeeseekeserve.detllklklYrsLGiel 67
                ++++++++l+++l++l++ l + e+  ++k++er++    +++ + Y+s+Gi+l
  CCG91191.1 35 KTKDAIDRLNTKLNSLRDYLSNSEDWLVDKAKERAKnTDEIIRKNPYQSIGISL 88
                567899***********************888885548888999********97 PP

>> RecG_N  RecG N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.7e-05     0.062      36      83 ..      31      78 ..       2      82 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
                H---GGGG-HHHH.HHHHHHHHHHTTSSSS-HHHHHHHHHHHHHHHHH CS
      RecG_N 36 liddplleneevlkeklskfldYikpiasLpeeRkikRlknglemiek 83
                 i ++ +++ + l+ kl+++ dY+++ ++   +++  R+kn  e+i k
  CCG91191.1 31 DIGEKTKDAIDRLNTKLNSLRDYLSNSEDWLVDKAKERAKNTDEIIRK 78
                555666666777889*******************************98 PP

>> Atypical_Card  Atypical caspase recruitment domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.03   1.1e+02      26      64 ..       8      46 ..       4      51 .. 0.85
   2 ?    8.7   0.1   0.00054       1.9      13      34 ..      46      67 ..      37      83 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.03
                   HHHHHHHHHH-TT--TT--SSSS-H.HHHHHHHHHHHHH CS
  Atypical_Card 26 ewLlakvkffLpnvdlssveeitdpkqkvsllLrkLeaq 64
                   e L + +k  L + d+  ++++ d+ +k +  +++L+++
     CCG91191.1  8 EKLVNDIKAVLHDADILLKTTAGDIGEKTKDAIDRLNTK 46
                   567888999999999999999999999999999999876 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00054
                   HHHHHHHHHHT-HHHHHHHHHH CS
  Atypical_Card 13 lraqLvelLskdlewLlakvkf 34
                     + L ++Ls++ +wL  k+k 
     CCG91191.1 46 KLNSLRDYLSNSEDWLVDKAKE 67
                   467899*************986 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.9   0.00024      0.86      26      69 ..      28      71 ..       5      79 .. 0.70
   2 ?    2.5   1.7     0.058   2.1e+02       2      15 ..      86      99 ..      85     100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00024
        YtxH 26 tRkdlkekaddlkekakelleeakekakekaedlkekvkekade 69
                t  d+ ek++d+ ++++  l+++++  +++ + l++k+ke+a+ 
  CCG91191.1 28 TAGDIGEKTKDAIDRLNTKLNSLRDYLSNSEDWLVDKAKERAKN 71
                55567777777777777777777777766666666666666655 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.058
        YtxH  2 lglliGaavGaaag 15
                + ll+G+a+G ++g
  CCG91191.1 86 ISLLVGIAIGIILG 99
                6799******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1276  (0.0711696); expected 358.6 (0.02)
Passed bias filter:                      964  (0.0537676); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 772.51
//
Query:       CCG91192.1  [L=233]
Description: biopolymer transport protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-25   87.3   0.5    9.5e-25   86.8   0.5    1.2  1  MotA_ExbB        MotA/TolQ/ExbB proton channel family
  ------ inclusion threshold ------
      0.023   14.8   0.0      0.041   14.0   0.0    1.5  1  OSTbeta          Organic solute transporter subunit beta prot
      0.053   13.5   0.0      0.098   12.6   0.0    1.4  1  Clathrin_H_link  Clathrin-H-link
       0.12   11.1   0.8       0.32    9.7   0.8    1.6  1  DUF5059          Domain of unknown function (DUF5059)
       0.12   12.1   0.4       0.21   11.3   0.4    1.3  1  UTP15_C          UTP15 C terminal


Domain annotation for each model (and alignments):
>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.5   2.6e-28   9.5e-25       8     126 ..      73     186 ..      64     187 .. 0.91

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 2.6e-28
                 HHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS.SGGCTHHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB   8 rilkaglqeklvdgaepeelrraleealsreeerlekglsilatigslaPllGLlGTVlGlieafqaladagsa.dlakvapgiaeALiaTalGlvvAi 105
                 ++l++gl+      +++ +l++al  a+s+++er +kgl +l+t+++l PllGLlGTV+G+++af+ +++ + a + a++++g+ae Lia  +Gl+vAi
  CCG91192.1  73 KVLQEGLK------HKDGALEDALLDAASEQLERFNKGLVVLDTAVTLGPLLGLLGTVTGMMHAFSIVGSGEIAgKQAAITGGVAESLIAVSFGLAVAI 165
                 45666666......688999*************************************************87777889********************** PP

                 HHHHHHHHHHHHHHHHHHHHX CS
   MotA_ExbB 106 pavlaynklkrkverlvlele 126
                 +a++  n+++++++r  +++e
  CCG91192.1 166 VAIIPLNFFSARMDRARRRIE 186
                 ***************999887 PP

>> OSTbeta  Organic solute transporter subunit beta protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.1e-05     0.041      34      88 ..      13      68 ..       1     100 [. 0.64

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
     OSTbeta 34 WnysiLvLsav..vvvisvvLLarsiqanRnrKiqpqeke.tpealyleeakakenns 88
                W   iL+Ls++  +v+   +L  ++i +nR+rK+ ++  e   +  y+e+  ++e+++
  CCG91192.1 13 W--PILALSVItlAVIFERLLFLIEIARNRKRKLVTKFLElVGQGRYEEALTIAEKSK 68
                4..4677776511667778999***********9854433144556666655554443 PP

>> Clathrin_H_link  Clathrin-H-link
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.7e-05     0.098      10      38 ..      45      73 ..      41      77 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.7e-05
  Clathrin_H_link 10 vqqFeqllaqgnykeAakvAaespqgiLR 38
                     v++F +l+ qg+y+eA ++A +s+  +L 
       CCG91192.1 45 VTKFLELVGQGRYEEALTIAEKSKDYVLK 73
                     789********************998886 PP

>> DUF5059  Domain of unknown function (DUF5059)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.8     9e-05      0.32     258     344 ..      66     159 ..      54     193 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 9e-05
     DUF5059 258 gesdaaakvvkdvfadfeGaraheaLeeadedaYegfegGleaLaeaieng.......daegvadavetvDenlvaGiea.Laggeaaavleagf 344
                   +d   kv ++ +++ +Ga   +aL +a ++  e+f++Gl  L +a++ g          g+ +a + v ++ +aG +a ++gg a +++  +f
  CCG91192.1  66 KSKDYVLKVLQEGLKHKDGAL-EDALLDAASEQLERFNKGLVVLDTAVTLGpllgllgTVTGMMHAFSIVGSGEIAGKQAaITGGVAESLIAVSF 159
                 456778899999999*99996.6899999999****************97622222225677888888888888888764156666666655554 PP

>> UTP15_C  UTP15 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   5.7e-05      0.21      12      77 ..      38     100 ..      32     106 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.7e-05
     UTP15_C  12 eekkkkklkkydklLrkfryskALdavlekkvekspevvvtllee.LrhR.galraALagrdeeslep 77 
                  ++k+k ++k+ +l  ++ry++AL  + +     s++ v+++l+e L+h+ gal+ AL +   e+le+
  CCG91192.1  38 RNRKRKLVTKFLELVGQGRYEEALTIAEK-----SKDYVLKVLQEgLKHKdGALEDALLDAASEQLER 100
                 356788889999************87644.....699******9989999779*****9999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1608.57
//
Query:       CCG91193.1  [L=138]
Description: biopolymer transport protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-25   89.2   1.3    2.6e-25   89.1   1.3    1.0  1  ExbD      Biopolymer transport protein ExbD/TolR
  ------ inclusion threshold ------
      0.041   13.9   0.4       0.05   13.6   0.4    1.1  1  DUF1521   Domain of Unknown Function (DUF1521)


Domain annotation for each model (and alignments):
>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   1.3   2.9e-29   2.6e-25       3     130 .]       8     135 ..       6     135 .. 0.96

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 2.9e-29
        ExbD   3 resaeinltpmiDvvflLLifFlv.taklkkpeplevdlPsssstqkeveekelirisisadgsiyldkkavsveelaqklkerkakppdkltvaikad 100
                 r+ ++++++p+iDv+f+LL  F++ + ++ k+e + v+lP ++s+++   ++++ +i+i+++g iy++k++vs+e l +k+ e+k+++ d+  v +++d
  CCG91193.1   8 RKRPRLEIIPFIDVMFFLLATFMMvSLAMIKNEGQTVNLPFAKSSSSIERKEKETTITITDKGDIYFNKDQVSIETLPAKIMELKTQDADP-RVFLNGD 105
                 7789***************9999889********************99999999*************************************.******* PP

        ExbD 101 kdvsygklvevldtlkkagiekvslvttle 130
                  ++ ++k+  vld ++k gi+k+++ tt+e
  CCG91193.1 106 CKATFEKVTAVLDLIRKQGITKIAIQTTKE 135
                 ***************************975 PP

>> DUF1521  Domain of Unknown Function (DUF1521)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   5.6e-06      0.05       4      80 ..      56     134 ..      52     138 .] 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.6e-06
     DUF1521   4 evkdgkaeidlGdkytitldekdgtilirnektgevtrikGdPhvdanGdgkadfdfkkdmtfql..ddG.tkitvdtvd 80 
                 e k+++++i + dk  i  ++ +  i     k  e+     dP v  nGd ka f+    + + l  ++G tki+++t +
  CCG91193.1  56 ERKEKETTITITDKGDIYFNKDQVSIETLPAKIMELKTQDADPRVFLNGDCKATFEKVTAV-LDLirKQGiTKIAIQTTK 134
                 568999***********************************************88744433.222223444888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.53
# Mc/sec: 787.60
//
Query:       CCG91194.1  [L=94]
Description: hypothetical protein MFUM_1010013 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 712.83
//
Query:       CCG91195.1  [L=121]
Description: ATP-dependent DNA ligase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-36  123.5   0.0    4.8e-36  123.2   0.0    1.1  1  LigD_N    DNA polymerase Ligase (LigD)


Domain annotation for each model (and alignments):
>> LigD_N  DNA polymerase Ligase (LigD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.0   2.7e-40   4.8e-36       1     105 []       7     105 ..       7     105 .. 0.98

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 2.7e-40
                 EEEESSSEEEEEEEEETTEEEEEEETT---SSTTSEEEEEEEEEE-GGGGGEEEEE-TTSTT-EEEEEEEEEEEEE..-HHHHHHHTEEEEEEECSSSE CS
      LigD_N   1 qeHdaprlHYDlrLeidevlsswavpkglpedpnskrlAvetedhpleyadfegliekgeygaGsvliwDtGtyeveeklaealkkrkiklrLhGeklk 99 
                 qeH a+r+HYDlrLe d+vl+swa+pk lp  p +krlA+++edhpl+y+ feg+i++geygaG+v+iwD+G+ye+      ++ k+ki + LhG++l+
  CCG91195.1   7 QEHYARRHHYDLRLEKDGVLKSWAIPKSLPL-PGEKRLAIQVEDHPLDYIGFEGIIPQGEYGAGTVTIWDQGEYEP-----VEWGKDKILFVLHGKRLR 99 
                 89****************************7.99******************************************.....79**************** PP

                 EEEEEE CS
      LigD_N 100 gkyvlv 105
                 gky+l+
  CCG91195.1 100 GKYALI 105
                 ***995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 918.38
//
Query:       CCG91196.1  [L=192]
Description: NUDIX family hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-21   76.6   0.0    2.4e-21   76.1   0.0    1.1  1  NUDIX     NUDIX domain
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.026   14.5   0.0    1.5  1  NUDIX_4   NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0   2.7e-25   2.4e-21      10     122 ..      33     141 ..      24     150 .. 0.83

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 2.7e-25
                 EEETTSEEEEEEESSSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEE.EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEECSGCSSTSTTTEE CS
       NUDIX  10 llnekgevLlvrrskkpfpg.WelPgGkvepgEtpeeAArREleEEtGlea.ellellgrlhylapydgpygdeheilyvfl.eevegelepndenevs 105
                 ++ +  ++Ll++r++ pf+g W+lPgG+ve++E++eeAA+REl+EEt+++a +l+++ +     +  +g++++ + i++ fl   + ++l+p++ ++ +
  CCG91196.1  33 FMPDTLHLLLIQRQNPPFQGmWALPGGFVEENEDLEEAAIRELKEETNINApQLVQIGA-----FGKPGRDPRGRVISIAFLlVMPFENLKPTAGDDAK 126
                 44555569******************************************967777777.....66777777789999999999999999********* PP

                 EEEEEEHHHHHHHHTHC CS
       NUDIX 106 evrwvpleellkeklaa 122
                 +++++pl++l  + la 
  CCG91196.1 127 NACFFPLNQL--PILAF 141
                 **********..33333 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.9e-06     0.026      10      49 ..      39      81 ..      29      93 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.9e-06
                EEEEEE--TTSSSTT-EE-SEEE.-TTS-HHHHHH...HHHHS- CS
     NUDIX_4 10 rvllekRpekgllggLwefPgge.eegeeleeala...reelgi 49
                ++ll +R++    +g+w +Pgg  ee+e+leea++   +ee++i
  CCG91196.1 39 HLLLIQRQNP-PFQGMWALPGGFvEENEDLEEAAIrelKEETNI 81
                6777788776.89*******998888888666665344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1366.61
//
Query:       CCG91197.1  [L=118]
Description: large-conductance mechanosensitive channel (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-33  114.9   6.7    2.8e-33  114.8   6.7    1.0  1  MscL      Large-conductance mechanosensitive channel, MscL
      0.001   19.2   0.8     0.0016   18.6   0.8    1.3  1  UPF0239   Uncharacterised protein family (UPF0239)


Domain annotation for each model (and alignments):
>> MscL  Large-conductance mechanosensitive channel, MscL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   6.7   3.1e-37   2.8e-33       1      95 [.       4     110 ..       4     118 .] 0.94

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 3.1e-37
        MscL   1 llkeFkefilrGnvidLAvgviiGaaftkiVtslvkdiimpliglllggvdfselkikl..........kaeaavlkygafiqavinFliiafviFliv 89 
                 +lkeFkef+++Gn id+Avgv+ G+af++iV+slv+diimp++g+l+ggvdf++l+++l          + ++++++yg fi+a+++F+ii + +F+ +
  CCG91197.1   4 FLKEFKEFAFKGNAIDMAVGVVFGTAFNQIVSSLVNDIIMPPLGVLIGGVDFKNLQLVLvpirkdafgeTIPEVAIHYGLFINAIVQFFIICLSVFIAI 102
                 79******************************************************9999********98899************************** PP

        MscL  90 kaink..k 95 
                 + +nk  +
  CCG91197.1 103 EFVNKmlA 110
                 ****9551 PP

>> UPF0239  Uncharacterised protein family (UPF0239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.8   1.8e-07    0.0016      14      42 ..      72     102 ..      65     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.8e-07
     UPF0239  14 edflelllrYGLflGAifql..vCilAiill 42 
                 e++ e+ ++YGLf+ Ai q+  +C++  i +
  CCG91197.1  72 ETIPEVAIHYGLFINAIVQFfiICLSVFIAI 102
                 6888999**********99755898887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 895.56
//
Query:       CCG91198.1  [L=206]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-05   25.5   0.0      0.006   16.4   0.0    2.1  2  DUF4412   Domain of unknown function (DUF4412)


Domain annotation for each model (and alignments):
>> DUF4412  Domain of unknown function (DUF4412)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.3e-07     0.006      17     121 ..      49     146 ..      37     149 .. 0.84
   2 !    7.3   0.0   0.00021       3.7     158     191 .]     152     183 ..     147     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.3e-07
     DUF4412  17 emtyflgkekqRmemsvqlkkipeklkttvltkakkpdelyilnekaktYseidlkeaaesaalldadsdytveklGketikGYsCehvritskeetle 115
                 ++  f+ ++k+R e    +k+        +++ +++   +y l+++ k + +i  +++ ++++    +   +++  G+et++   C+++ + ++ ++  
  CCG91198.1  49 KQRVFVDDKKMRLELLEGEKE-------NIMIYRSDLGVIYSLMPNRKLCFVIPYSQELKEKDPITSNTLNNITPEGTETLNEIVCDKFDVVGSFGKAF 140
                 566788888999998888775.......577777777******************666555555555666689999*********************** PP

     DUF4412 116 lWvtkd 121
                 lW++k+
  CCG91198.1 141 LWISKE 146
                 ***996 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00021
     DUF4412 158 kivqkneggevvmelvkiekksldaslFevPagY 191
                 +   +   g+ v++ ++ +k +++ +lFe+P+gY
  CCG91198.1 152 RLSSE--DGKNVVDWINYQKGPQPPELFEPPKGY 183
                 44444..4459999*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1563.46
//
Query:       CCG91199.1  [L=252]
Description: fructose-1,6-bisphosphatase or related enzyme of inositol monophosphatase family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-52  177.7   0.0    3.8e-52  177.5   0.0    1.0  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.5   0.0   2.1e-56   3.8e-52       5     238 ..       5     226 ..       1     243 [. 0.88

  Alignments for each domain:
  == domain 1  score: 177.5 bits;  conditional E-value: 2.1e-56
                 HHHHHHHHHHHHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHHHHHT- CS
  Inositol_P   5 vtkaavelaakagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTknFvrgi 103
                 ++++a+e+a +ag  lr++f+ ++++i ek    ++d+  ++d+ ++e i++++ + +p+h+i+gee+    +     +++ +wivDP+DGT+nF+ gi
  CCG91199.1   5 FLSTAIETALEAGDFLRRHFE-TDIKISEKF---SHDIKIELDNLAQEKIIASILKDYPEHQIIGEEGSIGSK-----DSEICWIVDPLDGTVNFTYGI 94 
                 67889***************9.******999...9******************************99887777.....666****************** PP

                 SG-EEEEEEEETTEEEEEEEEETTTTEEECEETTTEEEETCEEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCHEEEBESSHHHHHHH CS
  Inositol_P 104 pqvaVsigllvegkpvlGviaqPllgqlysaakgkGaflngeklplsrappiseallvtlfavssrkdtseasllekvesavsaegvrsvgssalklaa 202
                 p++++si++ ++gk ++Gvi++P+ ++l++a++     lng++++ s+++ +se++ v  f++ ++   + ++l+ ++ + v++   r  gs+al+la+
  CCG91199.1  95 PHFCISIAVQKRGKTIAGVIYDPIREELFTASEPGYPKLNGKVIKSSQRSFLSESVGVIGFSRTKETIAKATDLFFNLVPKVRKI--RFTGSAALDLAY 191
                 ***********************************9*****99999999966666554444444444444445566666666655..888********* PP

                 HHHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEEEEE CS
  Inositol_P 203 vaeGkadaylefgrekkWDhAAGeaileeaGGvvtd 238
                 va+G++d+y+e + +++WD+AAG++++e  GG++t+
  CCG91199.1 192 VACGRLDFYIEQQ-IQIWDIAAGILLVEKSGGKITT 226
                 *************.********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1862.49
//
Query:       CCG91200.1  [L=516]
Description: 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-28  100.3  17.0    1.2e-28  100.3  17.0    2.5  2  PMT_2     Dolichyl-phosphate-mannose-protein mannosyltransfer
    2.5e-08   33.8  21.1    2.5e-08   33.8  21.1    2.2  2  PMT       Dolichyl-phosphate-mannose-protein mannosyltransfer


Domain annotation for each model (and alignments):
>> PMT_2  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3  17.0   1.3e-32   1.2e-28       2     159 .]      77     236 ..      68     236 .. 0.92
   2 !    4.8   6.4    0.0034        30      62     132 ..     287     360 ..     267     373 .. 0.65

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 1.3e-32
       PMT_2   2 hPPliawllalftklfgfselairlvsalagvltilllyllarrlfgkraallaalllavvplfvalsalftpdaplvllwalalylllraleknklky 100
                 + P++aw +a++   fg+s+lair+++ l+++ + +l+y la++lf++r+all++l++a +p+f + s+l+t+d+p +++w+l+++l+l+a+ ++k  y
  CCG91200.1  77 KGPVVAWCIAVGSFFFGNSILAIRFMALLFSIGSGVLIYSLAEKLFDSRTALLSVLFAASCPIFSIGSVLMTIDSPSLFFWLLSAFLFLQAIVQDKRTY 175
                 56*******************************************************************************************99989* PP

       PMT_2 101 wllagvlfGlgflsKytaallliaallyllis..arr.ilkekkpylalllalllfspvliw 159
                 w+++g+++G+gfl Ky  a+ l+ + lyl++   +rr +l ++++y  ll+ +l  +pv++w
  CCG91200.1 176 WVFTGMSLGVGFLAKYVNAFELLCFSLYLWFYpdKRRlLLSQNYAY-FLLFSFLFSLPVWLW 236
                 ***********************9999****996666344444444.5999999999**999 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0034
       PMT_2  62 vplfvalsa.lftpdaplvllwalalylllrale..knklkywllagvlfGlgflsKytaallliaallyllis 132
                 ++++v +s     p ++++l++ l ++l++++l   k     w +++v+ G+++l    + l+ ++ +  ll+s
  CCG91200.1 287 SIILVLWSPaFRSPQTLFLLTLFLPAFLFYTFLSlhKAAKGNWTVTAVSSGIILLAYIMVRLFHLPHIKVLLLS 360
                 344455555344456665555555555555544411444578999*******9999988888888777766666 PP

>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8  21.1   2.8e-12   2.5e-08      75     236 ..      89     239 ..      62     249 .. 0.80
   2 ?   -4.2   3.8       1.1     1e+04     120     155 ..     290     325 ..     273     367 .. 0.59

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2.8e-12
         PMT  75 yypenvpyvslRlfsallgslivplvyltllelgfskltallaallvllenslitlsryilldspLlfftllsmyclvkferkapfsrswwlwllltgv 173
                  ++++ + +++R++  l+++++ +l y ++ e+ f+ +tall++l+ ++ +++   s ++ +dsp lff lls ++++++       + +++  ++tg 
  CCG91200.1  89 SFFFGNSILAIRFMALLFSIGSGVLIYSLA-EKLFDSRTALLSVLFAASCPIFSIGSVLMTIDSPSLFFWLLSAFLFLQA-----IVQDKRTYWVFTGM 181
                 345558999******************987.567999*******************************************.....57788888899*** PP

         PMT 174 alglavsvKwvglftvllvgllliwelwqllgdkslllksivkhllaralaliviPvtlylav 236
                 +lg++ ++K+v +f +    l +   lw+   ++ lll  +   ++  + +l+ +Pv+l +a 
  CCG91200.1 182 SLGVGFLAKYVNAFEL----LCFSLYLWFYPDKRRLLLS-QNYAYFLLFSFLFSLPVWLWNAN 239
                 *************999....4555557777754444444.44456667778999999997764 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.1
         PMT 120 lvllenslitlsryilldspLlfftllsmyclvkfe 155
                 lvl ++++    ++ ll  +L +f+  ++++l k+ 
  CCG91200.1 290 LVLWSPAFRSPQTLFLLTLFLPAFLFYTFLSLHKAA 325
                 444455555555555555555555555555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3497.39
//
Query:       CCG91201.1  [L=217]
Description: SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-31  107.2   0.0    6.2e-30  104.5   0.0    1.8  1  TPMT             Thiopurine S-methyltransferase (TPMT)
    4.7e-14   52.9   0.0    6.5e-14   52.4   0.0    1.2  1  Methyltransf_25  Methyltransferase domain
    6.9e-14   51.9   0.0      1e-13   51.4   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    5.2e-13   49.5   0.0    7.6e-13   48.9   0.0    1.2  1  Methyltransf_11  Methyltransferase domain
    1.3e-11   45.1   0.0    1.9e-11   44.6   0.0    1.2  1  Methyltransf_12  Methyltransferase domain
    5.1e-10   39.4   0.0    6.1e-10   39.2   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    2.4e-05   23.8   0.0      3e-05   23.5   0.0    1.1  1  TehB             Tellurite resistance protein TehB
  ------ inclusion threshold ------
      0.013   14.7   0.0      0.023   13.9   0.0    1.3  1  N2227            N2227-like protein
      0.075   12.6   0.0        0.1   12.2   0.0    1.1  1  NodS             Nodulation protein S (NodS)
       0.16   11.2   0.0        0.2   10.9   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.0   3.5e-33   6.2e-30       5     186 ..      28     192 ..      25     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 3.5e-33
                 HHHHHHHTT--TT--SS--HHHHHHHHT.T-S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHHHTTSGGGGGEEEE--.......... CS
        TPMT   5 fWekrweeeqipfhqeevnpllkkfldalkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffeeanlepkvkelsgvkeysageiellc 103
                  We +++ +q +++ +   p+l++ l++   +  +rvlvP+CG ++d++ lA+ + e vG++++++A+e + + + ++p  +               l 
  CCG91201.1  28 YWESKYQSGQAGWDRGAPSPALVEVLQR--FPTPKRVLVPGCGTGHDVHYLASLKIEAVGIDFAPSAIETARK-KAQSPLEN--------------YLL 109
                 6**************************9..777779**********************************633.33334333..............345 PP

                 .-TTT---SS-..EEEEEEESSTTTS-GGGHHHHHHHHHHHEEEEEE..EEEEE---S----SS----HHHHHHHHGGTEEEE CS
        TPMT 104 gdvFtlraeelgkfdliydraalvAlppelreryakslaelLkpdgeglLvtldypqaeheGPPfsvpeaeleallsagfkva 186
                 +d+F l+++   +fdli++   ++A+pp  r++y++s++++L+pdg  l +   + +   e PP+  + +e+ + +   f+++
  CCG91201.1 110 ADIFSLPQQFHESFDLIWEHTCFCAIPPIKRPHYVQSMYSMLRPDGLFLGIFFLDTESSTEPPPYCFTLNEIDRHFDPYFQLE 192
                 7**********************************************999999999999999*********999998887765 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   3.6e-17   6.5e-14       1      97 []      62     155 ..      62     155 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 3.6e-17
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS.SSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlp.fedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vL  GcGtG+++ +la    k + +g+D++++++e+ar++a+  ++  +++ +d+ +lp + ++sfDl++   +++ +++ +++++++ ++++L
       CCG91201.1  62 VLVPGCGTGHDVHYLASL--KIEAVGIDFAPSAIETARKKAQ--SPLENYLLADIFSLPqQFHESFDLIWEHTCFCAIPPIKRPHYVQSMYSML 151
                      6778************98..4********************5..567789********943577*******988******************** PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      +p+G
       CCG91201.1 152 RPDG 155
                      ***9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   5.6e-17     1e-13       6     108 ..      61     158 ..      58     161 .. 0.87

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 5.6e-17
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnala..dpdkileei 97 
                      rvl +GCGtG++++ la++   k+e vGiD+ + aie Ar++aq   l+n+    +di++l+++++ e+fDli  +  ++a++    + + +++
       CCG91201.1  61 RVLVPGCGTGHDVHYLASL---KIEAVGIDFAPSAIETARKKAQ-SPLENY--LLADIFSLPQQFH-ESFDLIWEHTCFCAIPpiKRPHYVQSM 147
                      78889************76...789****************866.899966..78*******8899.8****99998888877334567899** PP

  Methyltransf_31  98 ervlkpggill 108
                       + l+p+g +l
       CCG91201.1 148 YSMLRPDGLFL 158
                      *******9986 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   4.3e-16   7.6e-13       2      95 ..      64     158 ..      63     159 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 4.3e-16
                      EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTS..S-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklp..fednsfDlvvssevlhhv..edpekalkeiaRvLkpg 91 
                        GcGtG  + +la+   + vg+D+++ ++++a++ka+ +    +++ ad+ +lp  f  +sfDl++ + +++ +   ++ ++++ ++ +L+p+
       CCG91201.1  64 VPGCGTGHDVHYLASLKIEAVGIDFAPSAIETARKKAQSPL--ENYLLADIFSLPqqF-HESFDLIWEHTCFCAIppIKRPHYVQSMYSMLRPD 154
                      57************999********************9998..57*********8434.46**************8769*************** PP

                      EEEE CS
  Methyltransf_11  92 Gllv 95 
                      Gl++
       CCG91201.1 155 GLFL 158
                      *985 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   1.1e-14   1.9e-11       4      99 .]      66     157 ..      63     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.1e-14
  Methyltransf_12   4 GcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdir..evldnirklLkp 95 
                      GcGtG+ +++l+     ie +g+D+ psai  +++k a+   +n    +++ l   +++  +sfDl++ + +++++++i+   ++++++++L+p
       CCG91201.1  66 GCGTGHDVHYLASL--KIEAVGIDFAPSAI-ETARKKAQSPLENYLLADIFSLP--QQFH-ESFDLIWEHTCFCAIPPIKrpHYVQSMYSMLRP 153
                      9*************..**************.66666677776676666666555..3333.5**************7766569*********** PP

  Methyltransf_12  96 gGrl 99 
                      +G +
       CCG91201.1 154 DGLF 157
                      **75 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   3.4e-13   6.1e-10       9     120 ..      45     162 ..      37     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 3.4e-13
  Methyltransf_23   9 lsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae............kakkaqkdqfdeqeaaepqgkfdlIvlre 90 
                      +s +l ++l++ ++++rvL  GcGtG+   +l+    + +g+D  p a+e a+             ++++ ++qf         ++fdlI    
       CCG91201.1  45 PSPALVEVLQRFPTPKRVLVPGCGTGHDVHYLASLKIEAVGIDFAPSAIETARkkaqsplenyllADIFSLPQQF--------HESFDLIWEHT 130
                      567788899999*********************999*****************6666666666666666666666........78********* PP

  Methyltransf_23  91 vlehvpd..ppellrqiatllkpgGylllsep 120
                      +++ +p+   p+++++++++l+p+G++l   +
       CCG91201.1 131 CFCAIPPikRPHYVQSMYSMLRPDGLFLGIFF 162
                      ******64489***************875444 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.6e-08     3e-05      30     154 ..      58     181 ..      26     195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.6e-08
                 -S-EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG----S-EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEE CS
        TehB  30 kpgkvldlgcgqgrnslylsllgydvtawdknensiafleeikekenlknistalydineaklderydfilstvvlmfleaeripsiienmqectkvgg 128
                  p +vl  gcg g +  yl+ l  +   +d   ++i+  ++ ++    + + + ++ +   +++e +d+i     +  + + + p+ ++ m  + ++ g
  CCG91201.1  58 TPKRVLVPGCGTGHDVHYLASLKIEAVGIDFAPSAIETARKKAQSPLENYLLADIFSLP-QQFHESFDLIWEHTCFCAIPPIKRPHYVQSMYSMLRPDG 155
                 68999*****************************9999877666555555667777775.589************************************ PP

                 EEEEEEEB--SSS--SS--S--B-TT CS
        TehB 129 ynlivaamstddvpctvpfsftfkeg 154
                   l +  ++t+    + p+ ft++e 
  CCG91201.1 156 LFLGIFFLDTESSTEPPPYCFTLNEI 181
                 ************99999999988764 PP

>> N2227  N2227-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.3e-05     0.023      57      88 ..      58      89 ..      47      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.3e-05
                .T-EEEEET-TT-HHHHHHHHTT-EEEEEE-- CS
       N2227 57 ekvkilvPGaGlGrlavelatkgyqvegnEfs 88
                ++ ++lvPG+G+G  ++ la +++++ g++f+
  CCG91201.1 58 TPKRVLVPGCGTGHDVHYLASLKIEAVGIDFA 89
                5679************************9997 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.6e-05       0.1      47     142 ..      62     157 ..      48     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.6e-05
        NodS  47 alevGcaaGalterlapyckrltvvdvveeaiararervkesshiswivsdvqqfstd..ekfdlivvaevlyyiedvaelraavrnlvsllapdgql 142
                 +l  Gc +G     la +      +d  ++ai+ ar++ +  +  +++ +d+  + ++  e fdli     +  i  +++ +  v+ + s+l+pdg +
  CCG91201.1  62 VLVPGCGTGHDVHYLASLKIEAVGIDFAPSAIETARKKAQS-PLENYLLADIFSLPQQfhESFDLIWEHTCFCAIPPIKRPH-YVQSMYSMLRPDGLF 157
                 66779*****9******9999999*************9987.999*******9986543399****9999999999888866.689999999999976 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011       0.2      65     163 ..      61     158 ..      49     181 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
                 EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEE.S-GGG-----SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EE CS
        CMAS  65 tlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevkl.ldyedldekvdrvvsvgafehvgkenydtffkklkkllkedGll 162
                 ++L  GcG G+ v++ ++   ++ vg+ +     ++a+k+ ++   e+    ++ +  ++++e +d +     f ++   + +++++ ++++l++dGl+
  CCG91201.1  61 RVLVPGCGTGHDVHYLASL-KIEAVGIDFAPSAIETARKKAQSPL-ENYLLADIfSLPQQFHESFDLIWEHTCFCAIPPIKRPHYVQSMYSMLRPDGLF 157
                 67778********999988.9*************99999987754.33333333044589*************************************99 PP

                 E CS
        CMAS 163 l 163
                 l
  CCG91201.1 158 L 158
                 8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1470.84
//
Query:       CCG91202.1  [L=238]
Description: phosphoribosylformylglycinamidine synthase 1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-41  141.7   0.0    2.6e-41  141.5   0.0    1.1  1  GATase_5       CobB/CobQ-like glutamine amidotransferase doma
      1e-09   38.3   0.0    1.8e-09   37.5   0.0    1.3  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
    4.3e-08   33.1   0.0      1e-07   31.9   0.0    1.6  1  GATase         Glutamine amidotransferase class-I
    1.2e-06   28.4   0.0    1.8e-06   27.9   0.0    1.2  1  DJ-1_PfpI      DJ-1/PfpI family
  ------ inclusion threshold ------
      0.015   15.0   0.4      0.039   13.7   0.4    1.9  1  Peptidase_C26  Peptidase C26
      0.022   14.6   0.0       0.08   12.8   0.0    1.9  2  SNO            SNO glutamine amidotransferase family


Domain annotation for each model (and alignments):
>> GATase_5  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.5   0.0   8.6e-45   2.6e-41       4     236 ..       3     214 ..       1     228 [. 0.87

  Alignments for each domain:
  == domain 1  score: 141.5 bits;  conditional E-value: 8.6e-45
    GATase_5   4 vailreeGvngeyemaaafekaGfeavdvhmsdllegrvslddfqilalpGGfsygDelgsgkgwakslllneklrealekflnredtlaLGiCnGfql 102
                  ai+ ++G+n+  ++ + +ek   +  +v    l + ++++ ++  ++lpGGfsygD l sg++++  l   +++  a+++  +  +  ++GiCnGfq+
  CCG91202.1   3 WAIIEFPGSNCGPDCVYVVEKVLKHKATV----LWHTEKKIPSVDAIILPGGFSYGDYLRSGAIAS--L---SNIMGAVKEAARI-GVPIIGICNGFQI 91 
                 589*****************987777777....678899***********************9876..3...3567777766555.999********** PP

    GATase_5 103 LvklglvpggeieeaeksptltrNksgrfesrlvsvvvsekspsvfl...kgmeglslpvahGeGrfvfkseevlkeleangqvalrYvdeegkpteey 198
                 L++ +l+pg          +l+ N++ +f++  v+++v e+++s+f+    ++e++++p+ahG+G f + ++ +++++e++g++ +rY+d++g+++++ 
  CCG91202.1  92 LCESKLLPG----------SLITNRCLQFICSPVNLRV-ETNESIFTslfYSGEVIQIPIAHGQGCFYA-DPPTIQKMESEGLILFRYCDANGNISQQ- 177
                 *********..........9****************66.444455441246779***************.999**********************875. PP

    GATase_5 199 plNPNgSpegiagitspdGRvlalmpHpervveavqks 236
                   NPNgS ++iagi + +G +l+lmpHper++e+   s
  CCG91202.1 178 -SNPNGSLRNIAGIRNLKGNILGLMPHPERASENEFGS 214
                 .7*****************************9998777 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   5.9e-13   1.8e-09      33      91 ..      35      95 ..      22     101 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 5.9e-13
    GATase_3 33 kdeslgedadlvilpGgkdt...iqdlallresgldeaikeaaeaggpvlgiCGGlqmLGee 91
                +++++++ +d++ilpGg+++   +++ a++  s++  a+keaa+ g+p++giC G+q+L+e+
  CCG91202.1 35 TEKKIPS-VDAIILPGGFSYgdyLRSGAIASLSNIMGAVKEAARIGVPIIGICNGFQILCES 95
                4788865.*********9761115666789999***************************96 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   3.5e-11     1e-07      21     176 ..      26     209 ..      18     221 .. 0.69

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 3.5e-11
                 T-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.........TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTT.................... CS
      GATase  21 gvkvevvpidasaeeilellknpdgilvsgGpgspg.........vegkieaikearenkiPiLGICLGmQllaiefgr.................... 90 
                 ++k +v+++++ ++       ++d+i+++gG+ +             + + a+kea+  ++Pi+GIC G+Q+l+++                       
  CCG91202.1  26 KHKATVLWHTE-KK-----IPSVDAIILPGGFSYGDylrsgaiasLSNIMGAVKEAARIGVPIIGICNGFQILCESKLLpgslitnrclqficspvnlr 118
                 45666666552.23.....3479*********998889888888888888999999999**************99876666665555555555544443 PP

                 .....EEEEEECEEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTE...EEEEEEEETTTEEEESSBTTSTTS CS
      GATase  91 .....kvvkekekehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtaksedde...elmeiiekknpfvgvQFHPEstst 176
                      ++     ++    ++++ + +++ +y ++++++ + + ++ + +    +a+  ++ +s+ ++    +++i+++k ++ g+  HPE  s+
  CCG91202.1 119 vetneSIFTSLFYSGEVIQIPIAH-GQGCFYADPPTIQKMESEGLILFR--YCDANGNISQQSNPNGslrNIAGIRNLKGNILGLMPHPERASE 209
                 333322223333444444455555.447888888888888888888876..4555555666655555577788888888888888888887765 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0     6e-10   1.8e-06      60     119 ..      40     104 ..      10     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 6e-10
                 CG-SEEEE--BHHHHHHHHTSH.....HHHHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTSEE- CS
   DJ-1_PfpI  60 aeyDalvlpGGragperlrene.....kvvelvkefaekgklvaaICagpqlLaaagvlkgrrvT 119
                  + Da++lpGG +  ++lr  +      ++  vke+a+ g ++  IC g q+L + ++l+g  +T
  CCG91202.1  40 PSVDAIILPGGFSYGDYLRSGAiaslsNIMGAVKEAARIGVPIIGICNGFQILCESKLLPGSLIT 104
                 478***************98765545578999****************************99888 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.4   1.3e-05     0.039      98     118 ..      72      92 ..      33     148 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
  Peptidase_C26  98 iraalergvPilgiCrGlqll 118
                    +++a + gvPi+giC G+q+l
     CCG91202.1  72 VKEAARIGVPIIGICNGFQIL 92 
                    6899999************99 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.7e-05      0.08      16      83 ..      22      94 ..      16     126 .. 0.77
   2 ?   -1.1   0.0      0.47   1.4e+03     156     174 ..     189     209 ..     170     213 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.7e-05
                HHTTSEEEEE..-SGGGGCC-SEEEE-SS-HHH....HHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHHHCC CS
         SNO 16 kkclaenktv..krkedlaevdaliiPGGesta....mskliertglyedllefvknsekvvlGtCaGlillsk 83
                +k+l  + tv   +++++  vda+i+PGG s       + ++   +++ +++e ++ +  +++G C G+ +l++
  CCG91202.1 22 EKVLKHKATVlwHTEKKIPSVDAIILPGGFSYGdylrSGAIASLSNIMGAVKEAARIG-VPIIGICNGFQILCE 94
                55555555543356778999********998642211567888899999999998888.9********988864 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.47
                 EEE..ETTEEEESS-GGGSTT CS
         SNO 156 vak..qkkilatsfhPelaed 174
                 +++  +++il++  hPe a +
  CCG91202.1 189 GIRnlKGNILGLMPHPERASE 209
                 44443679********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1478.97
//
Query:       CCG91203.1  [L=70]
Description: phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-19   68.3   0.1    5.4e-19   68.2   0.1    1.0  1  PurS      Phosphoribosylformylglycinamidine (FGAM) synthase


Domain annotation for each model (and alignments):
>> PurS  Phosphoribosylformylglycinamidine (FGAM) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.1     3e-23   5.4e-19       2      68 ..       4      70 .]       3      70 .] 0.98

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 3e-23
                EEEEEEE-TTS--HHHHHHHHHHHHTTHTTEEEEEEEEEEEEEEE-SSHHHHHHHHHHHHHHTTS-T CS
        PurS  2 akveVtlKkgvlDpqGkavkkalkslgyeevedvrvgkyieleleaedeeeaeeeveemceklLaNp 68
                a++ + +K+gv DpqG+a+++al +lg+ e  +vrvgk i +e++++d+e+ +++vee+ ++ L Np
  CCG91203.1  4 ATILILPKEGVFDPQGEAIRNALIHLGLAETLSVRVGKEIVIEFKEADQEKLKQKVEEITKNFLSNP 70
                899***************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1069  (0.0596241); expected 358.6 (0.02)
Passed bias filter:                      674  (0.0375927); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 487.37
//
Query:       CCG91204.1  [L=443]
Description: adenylosuccinate lyase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-48  163.7   0.0    9.9e-48  163.1   0.0    1.2  1  Lyase_1   Lyase
    1.8e-16   60.4   0.0    5.3e-16   58.9   0.0    1.9  1  ADSL_C    Adenylosuccinate lyase C-terminus
  ------ inclusion threshold ------
      0.051   13.9   0.0       0.17   12.2   0.0    1.8  2  DUF5097   Domain of unknown function (DUF5097)


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.1   0.0   1.6e-51   9.9e-48       7     308 ..       7     282 ..       3     286 .. 0.94

  Alignments for each domain:
  == domain 1  score: 163.1 bits;  conditional E-value: 1.6e-51
                 TCHHHHHHHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSSGIIIII CS
     Lyase_1   7 adklmgiftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekvepndkv 105
                 ++++ +i++e+ r + +++     ++ ++ + + + + ++ ee ++i+k ++  lee+k +     + i+++   a+   l e +g        + +++
  CCG91204.1   7 REPMLQIWSEKKRIDSWIQ-----IEFLVLETLVEFGYLPREETKDIQKNISIGLEEIKRR-----EAITQHEILAFLEPLAEQLG-------PAGRYL 88 
                 7899999**********99.....8999999*****************9999999999999.....77777778887777999999.......999*** PP

                 TTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEETTTTTTT CS
     Lyase_1 106 htgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvellgggtav 204
                 h+g +s D+ +T ++l+lk+a  e Ll++++ L ++++eka++++ v+ iGrTh+  A+P+t g +l  + e+++r r+rl +++++++++ ++g  av
  CCG91204.1  89 HFGLTSSDILDTTFALQLKAAA-ELLLSDIDILLKVIEEKAVQYAFVPIIGRTHGVFAEPTTYGLKLLQMLEEFKRARSRLLQAKEEISYGMISG--AV 184
                 **********************.99**********************************************************************..99 PP

                 SSTTTSCCTHHHHHHHHHHHHHCSTEESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEBTHHHHHH CS
     Lyase_1 205 gtglnadpefaelvakelakvtglpvkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvNPvqlEll 303
                 gt++  dp+++  v k+l+   +   k +++  +v +rD+++ +l +++l+  s  ++a + r l+ +e+ +ve+ +  +++GSS MP+K+NP+ +E l
  CCG91204.1 185 GTYAHLDPKVEATVLKKLG---L---KVEPISSQVIPRDRHAFFLNCIALIGSSVERWATEFRHLQRSEVLEVEEPFKPKQKGSSAMPHKKNPILCERL 277
                 *********99********...5...5688888************************************99******99999***************99 PP

                 HHHHH CS
     Lyase_1 304 tgvag 308
                  g a+
  CCG91204.1 278 CGLAR 282
                 88775 PP

>> ADSL_C  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   8.8e-20   5.3e-16       2      72 ..     351     427 ..     350     428 .. 0.95

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 8.8e-20
                 GGGHHHHHHHHH.HTH-HHHHHHHHHHHHHHHHHC...HHHHHHT-HHHH.C.HHCHHHHHT-GGGCCTTHHHHHHH CS
      ADSL_C   2 lifservllaLv.kglgReeAyelVqeaamkawee...llelLaadpevk.k.seeeldalfdpayylgsadeivdr 72 
                 l +se ++laLv kg++R eAye Vq+ am +w+    l    +++p ++ + +++e+d l++++ yl+++++++ r
  CCG91204.1 351 LFASEGLMLALVqKGISRKEAYEAVQQVAMTCWQGdkpLSVYAKSHPFIStLlEPKEIDSLCSLDFYLKNVPTLFHR 427
                 789*********99*******************99****999********779889*******************98 PP

>> DUF5097  Domain of unknown function (DUF5097)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.56   3.4e+03      12      44 ..       2      34 ..       1      40 [. 0.87
   2 ?   12.2   0.0   2.8e-05      0.17      70     111 ..      46      88 ..      18      92 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.56
     DUF5097 12 vkyflknstkdlkelsasivkilsskFlinEkv 44
                ++ + ++   ++++  ++i + ++ +Fl+ E++
  CCG91204.1  2 IDRYTREPMLQIWSEKKRIDSWIQIEFLVLETL 34
                6788889999999999***********998875 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.8e-05
     DUF5097  70 dngskkeevklqeltRkeelskndvleflktiTidt.plgrll 111
                 ++ +k+  + l+e++R+e +++ ++l fl+ +  +  p gr l
  CCG91204.1  46 KDIQKNISIGLEEIKRREAITQHEILAFLEPLAEQLgPAGRYL 88 
                 44557889999******************99887655777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3276.76
//
Query:       CCG91205.1  [L=199]
Description: 2'-5' RNA ligase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-09   36.8   0.1     0.0026   17.9   0.0    2.3  2  LigT_PEase       LigT like Phosphoesterase
    3.9e-06   26.8   0.0    5.5e-06   26.4   0.0    1.2  1  2_5_RNA_ligase2  2'-5' RNA ligase superfamily


Domain annotation for each model (and alignments):
>> LigT_PEase  LigT like Phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.1e-07    0.0054      11      87 .]      30     103 ..      21     103 .. 0.68
   2 !   17.9   0.0   2.9e-07    0.0026      23      83 ..     127     185 ..     110     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.1e-07
                 HHHHHHHHHHHHCCTTEEETSGGGSEEEEEEEEEESHHHHHHHHHHHHHHHHTSB.EEEEEEEEEEEEEECCSCCEEE CS
  LigT_PEase  11 larlaaeleralaklglkpvrpfnpHiTLaflgevdeekvpellealaeiasgae.pfelkvdgvglfpsrlrprviy 87 
                 l    ++ ++ ++k +++  + + +HiT+ flg + ++ ++e+ +++ ++ ++   p +l +d+++  + + + ++i+
  CCG91205.1  30 L---SKQAKDLFPKIEGRAIPQDSLHITVLFLGWTLPSLIDEITKQIPSFLKPEGfPLSLPFDKAVFKK-KGKEGIIW 103
                 3...4455555699999999*************999999999999998886443224455566655443.33566665 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 2.9e-07
                 CCTTEEETSGGGSEEEEEEEEEESHHHHHHHHHHHHHHHHTSBEEEEEEEEEEEEEECC.SC CS
  LigT_PEase  23 aklglkpvrpfnpHiTLaflgevdeekvpellealaeiasgaepfelkvdgvglfpsrl.rp 83 
                 +k +++   +f pHiT+ +  ++  + vp+  ++ + i     pfel+++ ++l++s+l ++
  CCG91205.1 127 KKVDFQAYDKFIPHITVFRHVSY--KSVPDNMKKNQPII-LPTPFELTIEALHLVRSELrPS 185
                 455666669***********886..46666666666665.567****************554 PP

>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   6.1e-10   5.5e-06      20     149 ..      45     181 ..      24     183 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 6.1e-10
  2_5_RNA_ligase2  20 ayprwppHitLlypfvededl.adlaellsrlaketepfevrl..dgfgvFeh.kksvvylsv.sdsealqalraallealpea.gdkeds..g 105
                      a+p++ +Hit+l+++ + ++l ++++++++  +k +  f+++l  d++ +    k ++++ ++     al++l ++l + + ++  d   +  +
       CCG91205.1  45 AIPQDSLHITVLFLGWTLPSLiDEITKQIPSFLKPEG-FPLSLpfDKAVFKKKgKEGIIWFEAtLVPLALEKLIKELIQLMIHKkVDF--QayD 135
                      688999*****99998888888***********8755.8877775776665555666******8888999999999999844431333..245* PP

  2_5_RNA_ligase2 106 eftPHlTiaqsadstsa....aelleklaqalpplefevdevallrrd 149
                      +f PH+T+ +  + +s     ++ ++ +  +  p+e+++++++l+r +
       CCG91205.1 136 KFIPHITVFRHVSYKSVpdnmKKNQPII--LPTPFELTIEALHLVRSE 181
                      *******888876666665546666666..9999999999****9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1361.30
//
Query:       CCG91206.1  [L=40]
Description: hypothetical protein MFUM_1010026 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       107  (0.00596798); expected 358.6 (0.02)
Passed bias filter:                       99  (0.00552178); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 347.52
//
Query:       CCG91207.1  [L=137]
Description: NADH-quinone oxidoreductase subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-31  108.8   0.5    1.2e-31  108.8   0.5    1.5  2  Oxidored_q4      NADH-ubiquinone/plastoquinone oxidoreductase
    0.00069   19.6   6.3      0.021   14.9   0.0    2.1  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
  ------ inclusion threshold ------
       0.28   11.3   0.0       0.28   11.3   0.0    2.1  2  DUF5542          Family of unknown function (DUF5542)


Domain annotation for each model (and alignments):
>> Oxidored_q4  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.53   3.2e+03      73      85 ..      17      29 ..       4      33 .. 0.54
   2 !  108.8   0.5     2e-35   1.2e-31       3      99 .]      33     133 ..      31     133 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHH CS
  Oxidored_q4 73 gliemllFllill 85
                 +l+ ++ Fl+ ll
   CCG91207.1 17 TLAFVFQFLAALL 29
                 3333444444444 PP

  == domain 2  score: 108.8 bits;  conditional E-value: 2e-35
                  HHHHHHCHSS---.--HHHHS-SSSS--SS---.--HHCHHHHHHHHHHHHHHHHHHHHHHHHSST.....HHHHHHHHHHHHHHHHHHHHHHHHH-S CS
  Oxidored_q4   3 lllllsallgpkk.pnkeklspYEcGfepvgearlrfsvkfylvallFliFDvevvflfpwavslkel...glfgliemllFllillvglvYewkkga 96 
                   +l ++al+g+k  ++kek+ pYEcG +p+g ++ rfsvkfy+va+lF++FD+e++f+f+wa+s+++l   g+ +++ +l+Fl++l vg+vYe++k+ 
   CCG91207.1  33 GMLGVAALIGQKGrKTKEKDIPYECGKDPIGPQNPRFSVKFYMVAMLFILFDIETIFFFAWAISYQDLlsrGIGAFFVILFFLFLLGVGFVYEVRKKS 130
                  688999999976569999************************************************998888999*********************** PP

                  -XX CS
  Oxidored_q4  97 LeW 99 
                  L+W
   CCG91207.1 131 LDW 133
                  *** PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.5e-06     0.021      62      93 ..      18      51 ..       1      56 [. 0.78
   2 !    6.0   3.3     0.002        12      41      86 ..      75     124 ..      70     134 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.5e-06
  Phage_holin_3_6 62 la.a.lwlaalivaavllvlagvlalvglkklkk 93
                     la + + laal+vaa +l +a++ +  g+k+  k
       CCG91207.1 18 LAfVfQFLAALLVAAGMLGVAALIGQKGRKTKEK 51
                     33345899********************996655 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.002
  Phage_holin_3_6  41 gaagvlallalllllvalalala.a....lwlaalivaavllvlagvlalv 86 
                      ++a+++ l+ + +++++++ a++      + ++a+ v +++l l gv  + 
       CCG91207.1  75 MVAMLFILFDIETIFFFAW-AISyQdllsRGIGAFFVILFFLFLLGVGFVY 124
                      5677777777766666663.3332344776666666666666655555544 PP

>> DUF5542  Family of unknown function (DUF5542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.7e-05      0.28      21      64 ..      42      92 ..      35      95 .. 0.69
   2 ?   -4.7   4.2         3   1.8e+04      59      67 ..     110     118 ..     107     124 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.7e-05
     DUF5542 21 geagrqqqnrevrpqsgangl....pkhs..YWLdlWLFiLfDl.vlFiFv 64
                g+ gr+ +++++  ++g + +    p+ s  +++   LFiLfD+  +F+F 
  CCG91207.1 42 GQKGRKTKEKDIPYECGKDPIgpqnPRFSvkFYMVAMLFILFDIeTIFFFA 92
                5667778888888888877543222555544677788******95577775 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 3
     DUF5542  59 vlFiFvYll 67 
                 v+ +F++ll
  CCG91207.1 110 VILFFLFLL 118
                 344455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1047.59
//
Query:       CCG91208.1  [L=589]
Description: Acetolactate synthase 1, chloroplastic [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-56  191.3   0.1    9.1e-55  184.9   0.1    2.2  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    1.7e-48  163.8   0.0    3.3e-48  162.9   0.0    1.5  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
    5.6e-47  159.3   0.0      7e-46  155.8   0.0    2.3  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.9   0.1   1.5e-58   9.1e-55       1     166 [.      22     186 ..      22     190 .. 0.99
   2 !    4.3   0.0    0.0047        28     114     147 ..     521     556 ..     469     564 .. 0.78

  Alignments for each domain:
  == domain 1  score: 184.9 bits;  conditional E-value: 1.5e-58
                   EEHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEE CS
  TPP_enzyme_N   1 mtvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvls 97 
                   m++a+ +v  L+++gv+++f++pG+ ++p+  +l +++++r+vl rhEqg +f+A+gyaratgk+gv++ tsgpGatn++t++a+A+ d++Pl++++
    CCG91208.1  22 MSGADCVVASLEKEGVTTIFAYPGGASMPMHQSLTRAKSLRTVLPRHEQGGVFMAEGYARATGKVGVCMSTSGPGATNLVTGIADAYMDSVPLVAIT 118
                   789********************************************************************************************** PP

                   EE--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC- CS
  TPP_enzyme_N  98 gdrptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlle 166
                   g+++ +++g+g++q e+d  ++  p++k+++ v +p+e+p+++++A+ +a sgrpgPv++++pkdv+++
    CCG91208.1 119 GQVKKDMIGKGAFQ-ETDVFGITLPIVKHSYLVIDPREIPQIIKEALLIARSGRPGPVVIDIPKDVQQA 186
                   **************.****************************************************87 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0047
                   T..-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHH CS
  TPP_enzyme_N 114 l..dqlalfrpvtkyaervtspeelpealrrAirta 147
                   +  d  ++++ +   aervt+peel++al+r +++ 
    CCG91208.1 521 IypDFPQICKGFGVRAERVTKPEELVPALKRMLEAQ 556
                   455777888999999****************98765 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   0.0   5.5e-52   3.3e-48       2     137 .]     213     347 ..     212     347 .. 0.98

  Alignments for each domain:
  == domain 1  score: 162.9 bits;  conditional E-value: 5.5e-52
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTT CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgsep 98 
                   + +++ +++akrpv++vGgg+++sga+ el ++ae+++iPv+ttlmg g++pe+h+l+l  lg+hgs +an a++++Dl+la+G+rfdd r+tg+ +
    CCG91208.1 213 KTILDWIEKAKRPVLYVGGGIISSGAHLELLKFAERTNIPVTTTLMGIGSFPENHKLSLKWLGMHGSVYANFAVDQCDLLLAFGVRFDD-RVTGKVE 308
                   67999************************************************************************************.******* PP

                   TTTTT-EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  99 efapeakiihididpaeigknyqvdlaivgdvketleaL 137
                   +fap+a i+hidid +e++kn++vdla++gd+ke+l+aL
    CCG91208.1 309 AFAPKALIVHIDIDNSELNKNKRVDLAVLGDIKEALSAL 347
                   ************************************997 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.058   3.5e+02     130     153 .]     151     179 ..     135     179 .. 0.84
   2 !  155.8   0.0   1.2e-49     7e-46       1     153 []     408     563 ..     408     563 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.058
                   H.HHHHHHHHHHHH.....CSSSEEEEEE CS
  TPP_enzyme_C 130 adveeleealkeal.....ekkgpaliev 153
                    d+ e+ +++keal      + gp++i++
    CCG91208.1 151 IDPREIPQIIKEALliarsGRPGPVVIDI 179
                   4568999999***999999999*****97 PP

  == domain 2  score: 155.8 bits;  conditional E-value: 1.2e-49
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   ++G++++wa ++++++ pr++ltsgglg+mG+g paA+Gak+a pd++v+ i GDG+flm++qelatav + +p++ ++lnN+ +gm+ +++++f++
    CCG91208.1 408 GVGQHQMWAGQFYNFHHPRTFLTSGGLGAMGFGYPAALGAKIAIPDATVIDIDGDGSFLMNIQELATAVTEEIPVKAIILNNQHLGMVVQWEDRFYD 504
                   69*********************************************************************************************** PP

                   CTTTTSBB......BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  98 krksgpagk.....dlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                   ++++++        +   +df ++++++G+++ rv+k+  eel +alk++le ++p +++v
    CCG91208.1 505 SNRAHTFLGcpnnkKRIYPDFPQICKGFGVRAERVTKP--EELVPALKRMLEAQEPYVLDV 563
                   9999977558888767778***************9999..*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.57
# Mc/sec: 3103.98
//
Query:       CCG91209.1  [L=115]
Description: Phenylpyruvate tautomerase family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-14   53.3   0.0    3.4e-14   53.1   0.0    1.0  1  MIF            Macrophage migration inhibitory factor (MIF)
    6.6e-06   26.0   0.0       0.12   12.3   0.0    2.1  2  Tautomerase    Tautomerase enzyme
     0.0064   16.6   0.0       0.08   13.0   0.0    2.0  2  Tautomerase_2  Tautomerase enzyme
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.15   11.8   0.0    1.0  1  BCIP           p21-C-terminal region-binding protein


Domain annotation for each model (and alignments):
>> MIF  Macrophage migration inhibitory factor (MIF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   7.5e-18   3.4e-14       1     114 []       2     115 .]       2     115 .] 0.92

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 7.5e-18
                 -EEEEEESS-G.GGS-TTHHHHHHHHHHHHHTS-GGG-EEEEE-S----BTTB-SS-EEEEEEEESSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEEE CS
         MIF   1 Pmlevdtnlpk.ekvpaglekrltaalakalgkPedrvavevapgqalvfggstdPcavlslksiGvvgaeqnrshskkllellakeLklskdrvlief 98 
                 P+l+++tn++  e+  ++l + ++  + + l kP+++  +   + ++++f+g ++P a + l++i     ++    s++++ l+ k+ +++ dr++i+f
  CCG91209.1   2 PYLSIETNVALtEAQQKDLVESASRFIVEKLKKPQSYTMISYSGAKRFLFSGNEEPAAFVELRAINL-PINNCGELSSEICALIEKHCRIKPDRIFINF 99 
                 9********961556789***********************************************75.5556678899********************* PP

                 EEE-GGG-EETTEEGG CS
         MIF  99 fdleaaqvgfnGstla 114
                  +++a   g+n +t++
  CCG91209.1 100 SNVPANLWGYNKTTFG 115
                 *************995 PP

>> Tautomerase  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.7e-05      0.12       6      39 ..       7      40 ..       2      42 .. 0.82
   2 !   12.0   0.0   3.5e-05      0.15      18      56 ..      75     113 ..      74     115 .] 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.7e-05
                 EESTCS-HHHHHHHHHHHHHHHHHHHTS-GGG-E CS
  Tautomerase  6 klvegrsaeqKaeLaervTealvealgaprsaiv 39
                 +     +++q ++L+e  +  +ve l++p+s ++
   CCG91209.1  7 ETNVALTEAQQKDLVESASRFIVEKLKKPQSYTM 40
                 55555589**********************9887 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.5e-05
                  HHHHHHHHHHHHHHTS-GGG-EEEEEEE-TTSEEETTEE CS
  Tautomerase  18 eLaervTealvealgaprsaivVvieEvpaenwgvgges 56 
                  eL  ++ +++ ++ ++++++i++ +  vpa+ wg  ++ 
   CCG91209.1  75 ELSSEICALIEKHCRIKPDRIFINFSNVPANLWGYNKTT 113
                  6889999***************************88775 PP

>> Tautomerase_2  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.064   2.9e+02      32      72 ..       4      44 ..       1      52 [. 0.74
   2 !   13.0   0.0   1.8e-05      0.08      48      81 ..      76     109 ..      72     110 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.064
                   EEEEEES---HHHHHHHHHHHHHHHHHHH---GGGEEEEEE CS
  Tautomerase_2 32 ieitlsegRseeqKkaLyralaerlaaklgirpeDvfivlv 72
                   ++i ++   +e+q+k L+++  + + +kl  +++  +i+ +
     CCG91209.1  4 LSIETNVALTEAQQKDLVESASRFIVEKLKKPQSYTMISYS 44
                   67777777788888888888888888888777777777765 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.8e-05
                    HHHHHHHHHHHHH---GGGEEEEEEEE-GGGEEE CS
  Tautomerase_2  48 LyralaerlaaklgirpeDvfivlvenpkedWSf 81 
                    L  +++  +++++ i+p+ +fi+++ +p++ W++
     CCG91209.1  76 LSSEICALIEKHCRIKPDRIFINFSNVPANLWGY 109
                    7789****************************95 PP

>> BCIP  p21-C-terminal region-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.3e-05      0.15      69     156 ..       9      99 ..       3     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.3e-05
        BCIP  69 vlnlkkhkekecikqlkeyllekakksass....kkklkklLssskdkkvglliseRliNiPvevvpplykmLleeiewaqeeeeekesykf 156
                  + l++ ++k+ +++  +++ ek+kk +s      +  k +L  s++++ + ++  R iN+P++ + +l + ++  ie+  + ++++ +++f
  CCG91209.1   9 NVALTEAQQKDLVESASRFIVEKLKKPQSYtmisYSGAKRFLF-SGNEEPAAFVELRAINLPINNCGELSSEICALIEKHCRIKPDRIFINF 99 
                 5567888889****************99977888777777664.67789**************99999988888888777666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 885.67
//
Query:       CCG91210.1  [L=143]
Description: 50S ribosomal protein L13 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-48  163.7   0.2    2.5e-48  163.5   0.2    1.0  1  Ribosomal_L13  Ribosomal protein L13


Domain annotation for each model (and alignments):
>> Ribosomal_L13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   0.2   1.4e-52   2.5e-48       1     124 [.      14     137 ..      14     138 .. 0.99

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 1.4e-52
                    -EEEEEETTSBHHHHHHHHHHHHHTTTSTT--TTS--S-EEEEEEGGCBB-SSTHHTT-EEEEE-SSTTSEEEEEHHHHHCCSHHHHHHHHHHCCS CS
  Ribosomal_L13   1 kWyviDAegqvlgrlaskiakvLrGkhkptytphvdcGdyvvvinaekvaltgkkleqkvyyrhtgypgglkevtakellekkpeeilekaVkgmL 96 
                    +Wy+iDA++q++g++a k+a++LrGk k ++tp+vd+Gd+v+++na+k  ++gkk  qk y++++gy+gg+k+ t ++++ k+p+ i+e+aV+gm+
     CCG91210.1  14 NWYLIDAKDQIVGKVALKAATLLRGKGKVIFTPNVDTGDNVIIVNASKAIFSGKKEFQKRYSTYSGYIGGQKNYTPQKIRLKRPTFIIEHAVRGMI 109
                    6*********************************************************************************************** PP

                    -SSHHHHHHGCTEEEESSSTTSGGGGSC CS
  Ribosomal_L13  97 pknklgrrrlkrLkvyageehpheaqkp 124
                    p+n+lgr+ +++L+vy+g+ehph+aqkp
     CCG91210.1 110 PHNRLGRKIYTKLHVYEGAEHPHTAQKP 137
                    **************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1046.27
//
Query:       CCG91211.1  [L=134]
Description: 30S ribosomal protein S9 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-46  155.8   0.4    7.4e-46  155.6   0.4    1.0  1  Ribosomal_S9  Ribosomal protein S9/S16


Domain annotation for each model (and alignments):
>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.4   4.1e-50   7.4e-46       1     121 []      14     134 .]      14     134 .] 0.99

  Alignments for each domain:
  == domain 1  score: 155.6 bits;  conditional E-value: 4.1e-50
                   EECTTEEEEEEEEESSSEEEETTEECCHHSTTSCHHHHHCHHHHHTTTSSSEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTCCCTS- CS
  Ribosomal_S9   1 GrrKesvArvwikegkgkilvngksleeYfkeeaarekvleplkltgllgkfdvfvkvkgGGlsgqaeAirlgiaraLvalekeekkeLkkaglltr 97 
                   GrrK+++A+v +k+gkg++++ngk++e Yf+++ +r +v++pl++++ ++kfd+  k +gGGl+gqa+A++l++araL++++++++++Lkk+glltr
    CCG91211.1  14 GRRKTATATVILKPGKGEVKINGKDIEFYFPTFVHRWEVVKPLEVVEGTKKFDILGKATGGGLMGQAQAMKLAVARALIKYDSSYRSSLKKEGLLTR 110
                   9**********************************************************************************88************ PP

                   B--------TTSSCTTB----S-- CS
  Ribosomal_S9  98 DpRvvErkKtgkkkARkkyqwskR 121
                   DpR++ErkKtg+++ARk++q+skR
    CCG91211.1 111 DPRMKERKKTGQPGARKRFQFSKR 134
                   ***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 938.81
//
Query:       CCG91212.1  [L=345]
Description: N-acetyl-gamma-glutamyl-phosphate reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-28   99.0   0.0    5.5e-28   97.8   0.0    1.6  2  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
     0.0017   18.5   0.0      0.018   15.1   0.0    2.6  3  DapB_N          Dihydrodipicolinate reductase, N-terminus
  ------ inclusion threshold ------
      0.015   16.1   0.0      0.041   14.7   0.0    1.7  2  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
      0.063   13.2   0.0      0.098   12.5   0.0    1.3  1  NAD_binding_10  NAD(P)H-binding
       0.19   11.8   0.0       0.34   11.0   0.0    1.3  1  DUF87           Helicase HerA, central domain
        0.2   10.9   0.0       0.29   10.3   0.0    1.2  1  DUF2075         Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0   1.8e-31   5.5e-28       1     120 [.       5     144 ..       5     145 .. 0.96
   2 ?   -3.3   0.0         4   1.2e+04      23      43 ..     173     193 ..     163     200 .. 0.68

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 1.8e-31
                     EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGC..TT-SEEEE-SCHHHHHHHHHHHHHTTSEE CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeel..kevdivflalpagvskelapklaeagvkv 93 
                     +v+++Ga+Gy G+el+rlL++hp ++l  ++s++  +  +l ++++++  + +l+++++de e+  ke d vflalp+g   ++a+ l+e+g +v
      CCG91212.1   5 RVGVIGASGYSGEELVRLLANHPGIDLRIITSRQY-ENMPLGSVFPNIGRYGNLPFSNPDELETisKETDAVFLALPHGKGLPYAHYLYEQGKVV 98 
                     79********************************9.**********************66555558***************************** PP

                     EESSSTTTTST...................TSEBE-HHHHGGGGGG CS
  Semialdhyde_dh  94 iDlssdfRlkd...................davyvlpevnreaikk 120
                     iDls+dfRl++                   +avy lpe++ e+i++
      CCG91212.1  99 IDLSADFRLQNpldyelyykfshpytallkKAVYALPEIYVEQISS 144
                     *****************************************99975 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4
                     SSEEEEEEEESTTTTTSBHHH CS
  Semialdhyde_dh  23 pevelvvllsssrsaGkklae 43 
                     p++ +v+++s +  aGk+l+ 
      CCG91212.1 173 PQLIEVFAISGTTGAGKTLDT 193
                     666666666666668888765 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.2e-06     0.018       1      69 [.       4      73 ..       4     118 .. 0.72
   2 ?   -2.6   0.1       1.9   5.5e+03      94     103 ..     180     189 ..     177     195 .. 0.75
   3 ?   -0.5   0.0      0.44   1.3e+03      18      44 ..     302     328 ..     301     340 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.2e-06
                EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS.--S-BEBSSHHHHHHH-S CS
      DapB_N  1 ikvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglg.klgvavtddleevlekad 69
                i+v+v+GasG  G+e+v+++ +++++ l    +r+ +++   ++   +g+  +l +   d+le++ +++d
  CCG91212.1  4 IRVGVIGASGYSGEELVRLLANHPGIDLRIITSRQYENMPLGSVFPNIGRYgNLPFSNPDELETISKETD 73
                79*****************************999886555444444444433555555588888888877 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.9
                 EEE--SS--H CS
      DapB_N  94 lViGTTGlse 103
                 ++ GTTG  +
  CCG91212.1 180 AISGTTGAGK 189
                 689***9754 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.44
                 HHHHHSTTEEEEEEEETTCSTTTTTBH CS
      DapB_N  18 kaveeaedlelvaavdrkeselegkda 44 
                 +++ e++++ +vaa+d+ ++ + g+ +
  CCG91212.1 302 HLLAEKKKCLIVAAIDNLGKGAAGQAI 328
                 56788999********98865555544 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.4e-05     0.041       1      90 [.       4      99 ..       4     100 .. 0.81
   2 ?   -2.4   0.0       2.6   7.9e+03      68      68 ..     291     291 ..     248     330 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
                  EEEEEETT.SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE.....EESSHHHHHTCT.TESEEEE-S-GGGHHHHHHHHHHTT-EEE CS
  GFO_IDH_MocA  1 lrvaiiGa.Gkigskhlrplnesqrleevvalldpdaeraeavaesfgve.....aysdleelladp.eidavivatpngtheelakaaleagkhvl 90
                  +rv++iGa G+ g++ +r l +++++ ++  + +++ e+    +   ++       +s+ +el + + e dav+ a p g++  +a  + e+gk v+
    CCG91212.1  4 IRVGVIGAsGYSGEELVRLL-ANHPGIDLRIITSRQYENMPLGSVFPNIGrygnlPFSNPDELETISkETDAVFLALPHGKGLPYAHYLYEQGKVVI 99
                  69******888899999555.555*************99998855555553344477778888777769*************999999999999776 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.6
                   E CS
  GFO_IDH_MocA  68 v 68 
                   v
    CCG91212.1 291 V 291
                   2 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.3e-05     0.098       1      73 [.      10      84 ..      10     102 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.3e-05
                    TTTSHHHHHHHHHHHHC-T-EEEEE.ETTHHHCHHHHCT.TTC.EEEE--TT-CCHHHHHHTT-SEEEES---TCC CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtal.vRnpeklaeleae.egl.evvegdvtdvedlaealkgadaVvsalggggk 73
                    GA+G  G +lv+ l+++ g++++++  R+ e ++ l +  +++ +   + ++++++l+   k +daV+ al +g++
      CCG91212.1 10 GASGYSGEELVRLLANHPGIDLRIItSRQYENMP-LGSVfPNIgRYGNLPFSNPDELETISKETDAVFLALPHGKG 84
                    9***********999999*****99457788888.65445777355668899******************965554 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.34      26      48 ..     179     201 ..     174     211 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
       DUF87  26 lAilgsTGsGKSntvavLleell 48 
                 +Ai g+TG+GK+  +++L++e+ 
  CCG91212.1 179 FAISGTTGAGKTLDTKLLFSEIS 201
                 8*******************997 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   9.7e-05      0.29       3      53 ..     178     224 ..     176     231 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.7e-05
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealak 53 
                 v+ ++G +G+GKt+    l+ e+    +++ + y   Nh+ v  + ++++k
  CCG91212.1 178 VFAISGTTGAGKTLDTKLLFSEI----SGNLRPYGFPNHRHVPEIHQEIKK 224
                 899********************....999999999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2246.33
//
Query:       CCG91213.1  [L=404]
Description: N-acetylglutamate synthase (N-acetylornithine aminotransferase) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.5e-140  465.9   3.3   8.8e-140  465.7   3.3    1.0  1  ArgJ      ArgJ family


Domain annotation for each model (and alignments):
>> ArgJ  ArgJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  465.7   3.3  4.9e-144  8.8e-140       2     371 ..      22     401 ..      21     403 .. 0.97

  Alignments for each domain:
  == domain 1  score: 465.7 bits;  conditional E-value: 4.9e-144
                 EEEEXXSSS...SXXEEEEEEEEEEEEEEEEEXXSSXXHHHHHHHHHHH.HHSEEEEEEEEEEXXXSXHHHHHHHHHHHHHHHHHHHTSXGGGEEEEEE CS
        ArgJ   2 aagvaagik.kkkkdlalivseepasaaavfTknkvkAapvkvsrevlkkkkgaravvvnsgnANavtgeqGledaeemaeavaealgikeeevlvasT 99 
                 a+g+++gik  kk+dlal+vs++ a +a+vfT+nkvkAapv vs +++kk+k aravvvnsgnANa+tg++G+edae+ma+ +a+ lg++++ev+v+sT
  CCG91213.1  22 ASGISCGIKpGKKSDLALVVSQHLADIAGVFTQNKVKAAPVIVSMQRVKKGK-ARAVVVNSGNANACTGSRGIEDAEKMATVTASFLGCSPDEVCVCST 119
                 6899*****655************************************9876.********************************************** PP

                 EESSXXXXHHHHHHHHHHX....X....HHHHHHHXSSXSSXXEEEEEEEE.TEEEEEEEEEEXSSSXXXXEE--EEEEEE-----HHHHHHHHHHHHH CS
        ArgJ 100 GviGerlpmekieagieklvekle....eeaaeAimTTDtvpKlaavevel.gkevtiagiaKGaGmihPnmaTmLafittDaavsaealqellkeavd 193
                 G iG  lpm+ki +giek++++l+    ++aaeAimTTDtvpK+aa++v++ +ke+ i+g+aKGaGmi+Pn+aT+L++ittDaa+s+e l+++l+++v+
  CCG91213.1 120 GRIGVYLPMKKIIRGIEKACKQLNveggKDAAEAIMTTDTVPKQAALKVKIeDKEIIIGGMAKGAGMIAPNLATTLGIITTDAALSPEYLNSVLHSCVQ 218
                 ***********************888899**********************789********************************************* PP

                 HTGGGB-SSS---SS-EEEEEE--TT.....TT.STTHHHHHHHHHHHHHHHHHHHHHTSTT-S-EEEEEEEEESSHHHHHHHHHHHHT-HHHHHHHHT CS
        ArgJ 194 ksFnsisvDgdtSTnDtvlllAngaa.....eeeeedleefeealtevlqeLakqivrDGEGatklveveVkgakseeeAkkvaksvanssLvKtAlfG 287
                 ++Fn+is+DgdtSTnDt+l+++ng a      +++++   f++al+ vl +La+++ +DGEG+tk+ve+ V+ga+s++eA+ va+s+ ns LvK+++ G
  CCG91213.1 219 ETFNRISIDGDTSTNDTILVFSNGLAknttiGMDSPQKGIFKNALRLVLDRLAREVLEDGEGVTKVVEIFVQGAASDKEAELVARSIGNSLLVKCSWNG 317
                 *************************866655444889999*********************************************************** PP

                 T---HHHHHHHHHHSSS---TTS-EE..TTEEEEETTEE----HHHHHHHHH-SSEEEEEE--SSSEEEEEEEE---HHHHHHH CS
        ArgJ 288 eDanwGRilaavGyagaeldpekvsvllgevkvlekgepeevdeerakeilkeeeveievdlgegeeeatvwtcDLsyeYvkiN 371
                 eD+nwGRil+a+Gy+ga++d++k+++ +++++v+ +g ++e++e+  k+++k+  +++ +dl+ g+++ +++t+D+s+ Yv+iN
  CCG91213.1 318 EDPNWGRILCAIGYSGANVDQNKIDLFYNGFQVVASGVRTETKESLIKKTVKMPMFSLLIDLHIGSGQYRFFTTDISERYVRIN 401
                 **************************99**********99*******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2742.59
//
Query:       CCG91214.1  [L=296]
Description: acetylglutamate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-35  121.1   0.5    6.5e-35  120.9   0.5    1.0  1  AA_kinase  Amino acid kinase family


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.5   3.6e-39   6.5e-35       2     240 ..      32     272 ..      31     273 .. 0.92

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 3.6e-39
                 EEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHGE CS
   AA_kinase   2 rvVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglpa 100
                 ++V+K GG++++d+    ++r +++i  l+  g+++ ++hGgg  +++ +++ +g+s+++++ g+r+t++    +++++++  +g  + ++++++g +a
  CCG91214.1  32 IFVIKYGGAAMEDPML--VERTLRDIVLLEAVGIHPLIIHGGGEAINKAMKA-QGMSPKFIN-GIRVTDKDLIALIEKVLCKEIGPFVAQKIIEYGAKA 126
                 68************99..**********************************.*********.************************************ PP

                 EEE-GGGTCEECCCE............HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESST CS
   AA_kinase 101 vglsaaaldateagr..........degsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydad 189
                 v +++  + +   ++          d+g++g +   d+  + +ll++  ++v+++++   e+ge++++++D +a+  A+ ++A+kli+lt+++G++ ++
  CCG91214.1 127 VFIPGYEVFSA-VKWqafssqgdpiDYGYVGSIVAADIHPLLKLLHNQLIVVVSPLA-KGENGEIYNVNADIAASKMAKFIKAKKLIYLTNTSGILADE 223
                 ****9888643.33358999***********************************97.999999********************************888 PP

                 TTTCCTTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 190 pkkvpdarllpeisvdeaeesaselatgGmkvkhpaalaaarrggipvvIt 240
                  +  ++  ++++ ++d ++  +++ + gGm++k+++al+a+++g+ +v+ +
  CCG91214.1 224 KNPTSTISVVDKRRIDALK--KEGTIHGGMIPKVESALEALESGVEKVHFL 272
                 7777333555555555555..5************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.56
# Mc/sec: 1580.99
//
Query:       CCG91215.1  [L=407]
Description: ornithine/acetylornithine aminotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-97  325.8   0.0      4e-97  325.4   0.0    1.1  1  Aminotran_3    Aminotransferase class-III
     0.0013   17.9   0.0     0.0017   17.6   0.0    1.2  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.4   0.0  4.5e-101     4e-97       6     405 ..      22     402 ..      17     403 .. 0.95

  Alignments for each domain:
  == domain 1  score: 325.4 bits;  conditional E-value: 4.5e-101
                  B--SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHH CS
  Aminotran_3   6 ednlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetA 103
                  ++ l+lv++ +eG+yl+d  gk+ylD++++iav+ lGh+hP v +a+++q +kl h+s +++++epa kl++k+++l+++   kvf+ nsG+eA+e  
   CCG91215.1  22 YRRLPLVVDHGEGSYLWDIKGKKYLDFTGGIAVNVLGHSHPVVREALQQQSEKLIHCS-NLYFHEPAWKLSRKIVSLIGQ--GKVFFSNSGAEANECL 116
                  566779****************************************************.*********************..**************** PP

                  HHHHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SC CS
  Aminotran_3 104 lKlarkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpi 201
                  +Klar+y     + ++ +i++f+g+fHGrtl+ +++tg+ + +k++fgp++p++  ++ +              ++e +e+     ++++ A+ivEpi
   CCG91215.1 117 FKLARRYGE---SSNRFEILSFEGSFHGRTLAGIAATGQ-QRIKKGFGPTMPGFRTIPKAG-------------AKEFVES----LSEKTVALIVEPI 193
                  ******765...569************************.******************995.............2334444....5578889****** PP

                  ETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGC........TS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TT CS
  Aminotran_3 202 qgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAleha........gvspDlmtlaKaltgGlplsavlataevmqalapgshgsTf 291
                  qge Gv v + + l ++re+c ++ +l+ +DE+q+G+ rTG++ A +++        ++ pD + laK+l+gG+p+ a   + e  ++l +gshg+Tf
   CCG91215.1 194 QGESGVHVFPSQDLVEIREICWEKKILFFIDEIQCGLWRTGQFLAWQSLvaekmidqNLLPDGVSLAKGLGGGFPIGASWINSEYCNVLDEGSHGTTF 291
                  *********************************************99878888899999*************************************** PP

                  TT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-.TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---T CS
  Aminotran_3 292 gGnplacavalavleiieeekllenaqelgaalkegLeelqkky.evikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGdnvirllppl 388
                  gG plac val vle ie++ l +n+ ++g++l + L++l+kk+   ++evRg+G m+++el  ++     + + +++e G+l+ ++  n+irllppl
   CCG91215.1 292 GGSPLACHVALTVLEEIERKGLNKNILAMGNYLFSSLKNLEKKPqSLLQEVRGMGGMLGLELSVPSF----QAAIALLERGLLVAPSSGNTIRLLPPL 385
                  ********************************************899****************9999....78999**********999********* PP

                  T--HHHHHHHHHHHHHH CS
  Aminotran_3 389 iitdeeidelleilkka 405
                   ++ e+i+e+ +ilk+ 
   CCG91215.1 386 NVSFEQIQEAESILKHF 402
                  **********9999986 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.9e-07    0.0017     147     334 ..     177     373 ..      53     395 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.9e-07
                    E......TEEEEEEESS-TTT--.B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS.HTHHH.HGGSTTSTTEEEEE..ESSSTTSSGGG-EE CS
  Aminotran_1_2 147 k......ktkvilvesphNPtGt.vatleeleklldlakkynlllfvDeaYagfvfgsl.davat.ranveeepnllivg..slsKafGlaGeRvG 231
                           kt  ++ve ++  +G+ v++ ++l+++ +++ ++++l f+De+  g+  + +  a++  +a+ + + n l+    sl+K +G  G+ +G
     CCG91215.1 177 FveslseKTVALIVEPIQGESGVhVFPSQDLVEIREICWEKKILFFIDEIQCGLWRTGQfLAWQSlVAEKMIDQN-LLPDgvSLAKGLG-GGFPIG 270
                    23444447778888888888886489************************9999998776666643333333344.5555015666665.478888 PP

                    EEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS...TEEEECCSCSSEEEEEETHHCHHHHHH CS
  Aminotran_1_2 232 yilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael...glkvlasqsgmflltdlsaetakelsk 322
                    +  +n+++++ l   s + ++  s l+ ++++++l+  ++     +   + + ++  +l+++L++l     + l++  gm  + +l+ +   +++ 
     CCG91215.1 271 ASWINSEYCNVLDEGSHGTTFggSPLACHVALTVLEEIER-----KGLNKNILAMGNYLFSSLKNLekkPQSLLQEVRGMGGMLGLELS-VPSFQA 360
                    888888****************999999999999999776.....68888999999999999988877755555555555555555544.333443 PP

                    H..HHHTCTEEEEE CS
  Aminotran_1_2 323 k..Lleevgvyvtp 334
                    +  Lle+ g++v p
     CCG91215.1 361 AiaLLER-GLLVAP 373
                    3447777.777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.56
# Mc/sec: 2195.64
//
Query:       CCG91216.1  [L=305]
Description: ornithine carbamoyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-46  157.0   0.0    4.7e-46  156.5   0.0    1.3  1  OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl
    4.1e-39  134.2   0.2    1.6e-38  132.2   0.2    1.9  1  OTCace    Aspartate/ornithine carbamoyltransferase, Asp/Orn b


Domain annotation for each model (and alignments):
>> OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.0   5.3e-50   4.7e-46       1     148 []       5     144 ..       5     144 .. 0.96

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 5.3e-50
                 S-BSSGGGS-HHHHHHHHHHHHHHHHHHHTTT-STTTTT-EEEEEESS--HHHHHHHHHHHHHTTSEEEEEESTTTSCTTTGGSTTSSCHHHHHHHHHH CS
    OTCace_N   1 rhllsledlskeeieelldlaaelkekvkkekkekllkgktlallFeepStRTrvSfevAakrlGgkvlslseaediqlssvskgrkEsleDtarvlsr 99 
                 rh+ls++d+s++e + ++++a+e+ke++  +k+   l+++t al+F +pStRTr+SfevA+++lGg++l+l+ ++d+qls     r+E++eDta+v++r
  CCG91216.1   5 RHFLSIKDISEKEARLIFKKASEFKENRG-KKNLFFLSSQTWALIFRKPSTRTRLSFEVAVRELGGEALFLN-SQDLQLS-----RGEPIEDTAQVFGR 96 
                 8************************9976.6777889***********************************.88*****.....78************ PP

                 HTSEEEEEESSHHHHHHHHHHHSSEEEEEEETSSB-HHHHHHHHHHHHH CS
    OTCace_N 100 yvdaiviRhpgaeeleelakyasvpviNagdgdgeHPtQaLaDlltire 148
                 +v++i++R+++++ele +a y ++pviNa+ +d+eHP+Q+L D++  +e
  CCG91216.1  97 MVHGIIMRTFSQKELELFAIYGNIPVINAL-TDEEHPCQVLSDIFSYEE 144
                 ************9*****************.*************98765 PP

>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2   0.2   1.8e-42   1.6e-38       1     156 [.     150     293 ..     150     294 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 1.8e-42
                 CC.EEEEESSTTSHHHHHHHHHHHHCT-EEEEES-TT.SSH-HHHHHHHHHHHHHHT-EEEEESSCHHHHTT-SEEEE--SSETTCCGGHHHHHHHHCC CS
      OTCace   1 kglkiafvGdkknnvanslikllarlgmdvvlvaPkg.lepdkevleeakknakksggsititedleeavkgaDvvytdvwvsmgeekereerlkklkd 98 
                 +g+kiafvGd+ +nva+s++ ++ ++ ++++++aP+  ++p    +          +  +t t+++eea+++a  +ytdvw+smg+e+e ++r  ++ +
  CCG91216.1 150 EGKKIAFVGDGCCNVARSWALAAEIFRFHLSIAAPPLyFSP----I---------DNPFVTNTTSIEEACQDASLLYTDVWTSMGKEEEMQKRQIEFSG 235
                 69***********************************5555....2.........35789999************************************ PP

                 CSB-HHHHHHS-TT-EEEE-S---BTTTB-HHHHTSTTBHHHHHHHHHHHHHHHHHHH CS
      OTCace  99 yqvteellklakkdaivlHcLPakrgeEvtdeVfdsprsvvfeqaeNrlhtikAllvl 156
                 yq++e+ +k a+kd++v+HcLPa r++E+++e f++ +  ++ qaeNrlh++kAll++
  CCG91216.1 236 YQLNEQAVKVASKDVLVFHCLPAYRNKEISAELFKERAEDIYTQAENRLHVQKALLAW 293
                 ********************************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2081.93
//
Query:       CCG91217.1  [L=45]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 344.28
//
Query:       CCG91218.1  [L=421]
Description: putative NADH dehydrogenase, FAD-containing subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-41  141.8   0.0    3.2e-41  141.5   0.0    1.0  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.3e-13   51.3   1.8    1.3e-09   38.5   0.4    3.0  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      5e-05   23.4   0.1      0.017   15.3   0.0    2.8  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0004   20.4   0.1        0.8    9.7   0.0    2.5  2  NAD_binding_9   FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.018   14.3   0.2        1.1    8.4   0.1    2.3  2  FAD_binding_3   FAD binding domain
      0.022   14.0   0.0        1.1    8.5   0.0    2.3  2  Thi4            Thi4 family
      0.034   13.7   0.7         25    4.3   0.0    3.0  3  DAO             FAD dependent oxidoreductase
      0.035   12.9   0.1       0.59    8.9   0.0    2.1  2  Trp_halogenase  Tryptophan halogenase
       0.16   11.2   1.4        3.1    7.0   0.3    2.5  3  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.5   0.0   1.6e-44   3.2e-41       2     294 .]       5     321 ..       4     321 .. 0.90

  Alignments for each domain:
  == domain 1  score: 141.5 bits;  conditional E-value: 1.6e-44
                  SEEEE--SHHHHHHHHHHHH......HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH..HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEE CS
                  xxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq......agakvtlvelegtclnggcllskallgvaedaeias..evvkklnqgielllgeevvkidpgkkkvklekkk 91 
                  +vv+ GgG++Gl+aa+tl++        +k tl+ ++++++++++ll++++++  ++++ia   + + +  q++e++++ ++ +id +kk + ++k  
   CCG91218.1   5 HVVIGGGGFGGLTAAKTLGKeiqkrkLPCKLTLI-DKENHHLFQPLLYQVATAGLAATDIAVpiRSILSRIQEVEVRME-TIERIDLEKKMLFCSKG- 99 
                  67777888************9999866*******.9999*************************666777789999999.99*******99999544. PP

                  CTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.................SEEEEES-SHHHHHHHHHHHHHT-...... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxx...... RF
  Pyr_redox_2  92 egdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp.................krivvvGgGyiGvElAaalaklgk...... 166
                        + yd l+l  G + + +g +     +  l +tl + + ++   l+                   +v+vGgG++GvElA+ala+l k      
   CCG91218.1 100 -----VLSYDFLILSLGMRVNYFGHEEWSSFCLGL-KTLGDGRSIRNVILNafekaeietnpkerekyMTFVIVGGGPTGVELAGALAELSKkalkkd 191
                  .....59****************999996677666.88888888888888888888888888888777777*******************88789999 PP

                  .........EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEET CS
                  .........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 167 .........evtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklglelder 255
                           ++ l+ea++r+l +++++lsa ++ +lek+Gve+++ + v++i++ +     +  +g  i+a+++++a+Gv + +      l ++  ++
   CCG91218.1 192 frnidpantRIILLEAAPRILLSYNERLSALARSRLEKMGVEIMVSKPVEKIEKGK-----IFYKGGMIEASTILWAAGVCAMDL---PGLDVPKVKD 281
                  999999988899*********99*****************************9666.....6899999**************983...57899999** PP

                  TEEE--TTSBES.STTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 256 ggivvdeflrtn.vpgiyaiGDvaggkggpelaqaAvqqG 294
                  g+i+v e l +  +p+i++iGD+a   g+p+ a+aA+q+G
   CCG91218.1 282 GRIKVLEDLTVPgHPEIFVIGDMAMVPGVPAVAPAAIQMG 321
                  *********9977***********999***********98 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00036      0.72       1      35 [.       5      45 ..       5      85 .. 0.82
   2 !   38.5   0.4   6.5e-13   1.3e-09       2      68 ..     164     245 ..     163     249 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
                EEEEECSSHHHHHHHHHH......HHTTSEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgal......aelgkkVtvversdkll 35
                +vv+ GgG+ gl +A++l      ++l +k t+++ +++ l
  CCG91218.1  5 HVVIGGGGFGGLTAAKTLgkeiqkRKLPCKLTLIDKENHHL 45
                79999*************9998888888******9999877 PP

  == domain 2  score: 38.5 bits;  conditional E-value: 6.5e-13
                 EEEECSSHHHHHHHHHHHHTT...............SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelg...............kkVtvversdkllrllDeeaskilqeklekngievllntkveeieg 68 
                  v+vGgG +g+ElAgalael                 ++ ++e+++++l  ++e +s++ + +lek+g+e++ ++ ve+ie+
  CCG91218.1 164 FVIVGGGPTGVELAGALAELSkkalkkdfrnidpanTRIILLEAAPRILLSYNERLSALARSRLEKMGVEIMVSKPVEKIEK 245
                 59***************66555556666667778889*******************************************96 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   8.6e-06     0.017       2      30 ..       9      43 ..       7      45 .. 0.79
   2 ?    5.2   0.0     0.013        25       1      18 [.     166     183 ..     166     225 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.6e-06
                   E--SHHHHHHHHHHHCC......TEEEEEE-SSSS CS
  NAD_binding_8  2 vGaGlsGlvaAylLaka......gfdvlllekrdr 30
                    G+G++Gl+aA +L k+       ++ +l++k ++
     CCG91218.1  9 GGGGFGGLTAAKTLGKEiqkrklPCKLTLIDKENH 43
                   488***********985544444559******987 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.013
                    EE--SHHHHHHHHHHHCC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka 18 
                    IvG+G +G  +A +La+ 
     CCG91218.1 166 IVGGGPTGVELAGALAEL 183
                    9********999999853 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0     0.001       2.1       2      35 ..       8      42 ..       6      57 .. 0.84
   2 !    9.7   0.0    0.0004       0.8       1      32 [.     165     196 ..     165     239 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.001
  NAD_binding_9  2 ivGaGprGlavlerLlara.kkkspleitlfdpse 35
                   i G+G+ Gl++++ L ++  k+k p ++tl+d+++
     CCG91218.1  8 IGGGGFGGLTAAKTLGKEIqKRKLPCKLTLIDKEN 42
                   44789************99999999*******954 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0004
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfd 32 
                    +ivG+Gp+G+ ++ +L++ +kk+ + +   +d
     CCG91218.1 165 VIVGGGPTGVELAGALAELSKKALKKDFRNID 196
                    7***************9998444444444444 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.017        34       3      34 ..       5      42 ..       4      48 .. 0.78
   2 ?    8.4   0.1   0.00057       1.1       4      22 ..     164     182 ..     161     190 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.017
                   EEEEE--SHHHHHHHHHHHHTTHH.......EEEEESSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvr.......vvlvekrs 34
                    V+I G+G  Gl++a+ L +  ++        +l++k +
     CCG91218.1  5 HVVIGGGGFGGLTAAKTLGKE-IQkrklpckLTLIDKEN 42
                   588899999*********999.88666666666676665 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00057
                    EEEE--SHHHHHHHHHHHH CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLse 22 
                     +IVG+Gp+G+ la  L+e
     CCG91218.1 164 FVIVGGGPTGVELAGALAE 182
                    58*************9997 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00053       1.1      20      39 ..       6      25 ..       3      36 .. 0.89
   2 ?    3.1   0.0     0.023        46      15      38 ..     161     182 ..     147     190 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00053
                EEEE--SHHHHHHHHHHHHC CS
        Thi4 20 vvivGaGssGLtaayylakk 39
                vvi G+G  GLtaa++l+k+
  CCG91218.1  6 VVIGGGGFGGLTAAKTLGKE 25
                9*****************98 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.023
                 HTEEEEEEE--SHHHHHHHHHHHH CS
        Thi4  15 yaesDvvivGaGssGLtaayylak 38 
                 y+    vivG+G++G+  a  la+
  CCG91218.1 161 YM--TFVIVGGGPTGVELAGALAE 182
                 44..479********999988876 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.012        25       2      29 ..       6      41 ..       5      45 .. 0.71
   2 ?    3.5   0.2     0.021        42       2      29 ..     164     208 ..     163     212 .. 0.64
   3 ?    2.5   0.0     0.043        86     150     213 ..     220     274 ..     212     301 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.012
                EEEECTSHHHHHHHHHH....HHTT....EEEEESS CS
         DAO  2 vviiGGGiiGlstAyeL....arrg....Vtllekg 29
                vvi GGG  Gl++A  L    ++r+     tl++k+
  CCG91218.1  6 VVIGGGGFGGLTAAKTLgkeiQKRKlpckLTLIDKE 41
                666677788888888886665445466999999997 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.021
                 EEEECTSHHHHHHHHHHHHTT.................EEEEESS CS
         DAO   2 vviiGGGiiGlstAyeLarrg.................Vtllekg 29 
                  vi+GGG +G+  A +La+                   ++lle++
  CCG91218.1 164 FVIVGGGPTGVELAGALAELSkkalkkdfrnidpantrIILLEAA 208
                 69*********9999997631122223344455555666666665 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.043
                 HHHHHH.HHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHHHHHTTCTT CS
         DAO 150 aalara.aealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsdllgllkel 213
                  alar  +e+ Gvei    +v+++e+  gk+        g + +a ++  aaG+ +  l   + l
  CCG91218.1 220 SALARSrLEKMGVEIMVSKPVEKIEK--GKIFYK-G---GMI-EASTILWAAGVCAMDL---PGL 274
                 46666669****************64..343333.2...443.4577999999876555...444 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0003      0.59       2      35 ..       6      42 ..       5      47 .. 0.90
   2 ?    1.9   0.1      0.04        79       2      24 ..     164     186 ..     163     191 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0003
                    EEEE--SHHHHHHHHHHHHHTTTS...SEEEEEE-SS CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgk...levtlvesee 35
                    +vi GGG  G +aA +l+k ++++   +++tl+++e+
      CCG91218.1  6 VVIGGGGFGGLTAAKTLGKEIQKRklpCKLTLIDKEN 42
                    8999***************9998778899***99986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.04
                     EEEE--SHHHHHHHHHHHHHTTT CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkg 24 
                      vivGGG+ G   A ala+  k+
      CCG91218.1 164 FVIVGGGPTGVELAGALAELSKK 186
                     69*********999999987754 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.4   2.8e+03       2      16 ..       7      22 ..       6      42 .. 0.69
   2 ?    7.0   0.3    0.0015       3.1       1      20 [.     165     184 ..     165     190 .. 0.86
   3 ?    2.4   0.0     0.038        76      91     134 ..     227     266 ..     210     302 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.4
  Pyr_redox_3  2 IiGaGP.aGlaaaiel 16
                 +iG+G   Gl+aa +l
   CCG91218.1  7 VIGGGGfGGLTAAKTL 22
                 6665541678887665 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0015
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkag 20 
                  +I+G+GP G++ a +l ++ 
   CCG91218.1 165 VIVGGGPTGVELAGALAELS 184
                  7************9998765 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.038
  Pyr_redox_3  91 aksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGe 134
                   ++  ++i+  + Ve+++k +    +  + + +eA+++++A+G 
   CCG91218.1 227 LEKMGVEIMVSKPVEKIEKGK----IFYKGGMIEASTILWAAGV 266
                  567778899999999999986....555799***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 2841.09
//
Query:       CCG91219.1  [L=238]
Description: Kynurenine formamidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-33  114.1   0.0    6.7e-33  113.8   0.0    1.1  1  Cyclase   Putative cyclase


Domain annotation for each model (and alignments):
>> Cyclase  Putative cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   3.7e-37   6.7e-33       1     135 [.      15     179 ..      15     180 .. 0.88

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 3.7e-37
     Cyclase   1 idLshplsedtpvwp.dp...................islsehtGTHlDapgHfae..ktidelpleelvgpavvldvsakaaa.edyeiitaedleaa 76 
                 idL++pl++++p++p +                    ++l+eh GTH+Dap+H+ +  k++ e++l++l+ p+v++dvs+ka++ +d+ ++t ed+ ++
  CCG91219.1  15 IDLTYPLEPSFPIFPgQGsvghicfqtikedgyasnrWELPEHWGTHFDAPLHYSKagKSVGEIELSDLFSPLVLIDVSEKATHnPDT-LLTLEDVLRW 112
                 8*************64224567788899999***********************99999*******************9997445898.88******** PP

     Cyclase  77 lakqgveikpgdivlirTgwskrl.......edkeky.rnpglseeaaewlaekg.vkavGvDtlsvD 135
                 ++++g  i+++++vl+++gw+k         ++++   + pg+s ea+++l++++ ++++GvDtls+D
  CCG91219.1 113 EERYG-AIPENSVVLMYSGWGKWIqtpifynKKEDGLlHFPGFSLEAVQFLIRERkIAGIGVDTLSID 179
                 *****.**************97657777753323333666************9999***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1711.88
//
Query:       CCG91220.1  [L=554]
Description: Glycogen synthase 2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-73  245.2   0.0      1e-72  244.8   0.0    1.2  1  Glyco_transf_5   Starch synthase catalytic domain
    8.4e-13   48.2   0.0    1.6e-12   47.3   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
     0.0015   18.6   0.0      0.023   14.7   0.0    2.4  1  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.8   0.0   1.7e-76     1e-72       1     244 []      52     292 ..      52     292 .. 0.94

  Alignments for each domain:
  == domain 1  score: 244.8 bits;  conditional E-value: 1.7e-76
  Glyco_transf_5   1 kilfvasEvaplaktGGLadvvgaLpkaLaklghdvrvilPrygaikeekkeleevaelskaaedeveve..v.ekvkvaklkkd.gvdvyfldn 91 
                     kil vasE++p+ak+GGLad++ +L++ Lakl h+v+vi+P y+ i+++ ++++ + +        v+++     ++++ +++ d ++++++++ 
      CCG91220.1  52 KILLVASECSPYAKVGGLADMIFSLSRSLAKLEHEVKVIIPFYSVIDKSLYNIRFLGSAC------VHMGcnCeHWIGLHEASLDgNIPLWLVEY 140
                     8***********************************************998888888864......33342224777888888866********* PP

  Glyco_transf_5  92 peffdreglYgdkgedyednaerfalfsraalelleklgwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNlayqgrfpkdelaal 186
                      ++f+r+g+Y ++g++y dna rf +fs+a+le+++++gw+pd+ h++DW+t+l+ ++lk + +  + fkk ++++tiHN+ yqg++++ +l  l
      CCG91220.1 141 ADYFNRRGIYDESGREYTDNAYRFGMFSKAVLEICKEMGWIPDIFHVNDWQTSLLSVFLKIWPNLLSPFKKSASLLTIHNICYQGKYDAMVLPYL 235
                     **********999*************************************************9999***************************** PP

  Glyco_transf_5 187 glpaedfekldglefygkvnflkagivyadavttVSptyakEiltpefggglegllre 244
                     g++++ f + d +e yg++n+lkagivy+d++ttVSptyakEil+p  g gl ++lr+
      CCG91220.1 236 GIDWKLF-TADTFEDYGQINLLKAGIVYSDFITTVSPTYAKEILEPIGGAGLSEILRK 292
                     ****999.7**************************************888*****996 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   2.7e-16   1.6e-12       5     169 ..     338     505 ..     335     507 .. 0.85

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 2.7e-16
                      HHHHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTT.CGGGEEECCHSSSHHHHHHC.ESEE CS
  Glycos_transf_1   5 krkklgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelels.dnviflgevsredleellkn.adif 96 
                      +++ l+k+ + +i+ +v+rl  +Kg++ll   +++  +   +++++v+ G+ge+e e   +  + e s +   f+g+++  +l +l+ + +d f
       CCG91220.1 338 EKFGLRKAPNIPIVGMVSRLHVQKGISLLKSILKEALA--TEDFQFVLLGEGEKEFEDFFRTLSMEFSgKAASFIGFSE--ELAHLIFAgSDFF 427
                      567788888999**********************9875..7*********55554444444444444316789999999..787777777**** PP

                      EEEESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTT.....SEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHH CS
  Glycos_transf_1  97 vlpsisEgfGivllEAmaaglpviasnaggpaevvkdge.....tGllvkpnnaealaeairklledeelrerlgena 169
                      ++ps +E+ G+  l A  +g+  ia ++gg+ + v d       tG+l+++++a al e ++ +l   + + +l++ a
       CCG91220.1 428 LMPSLYEPCGLGQLYAQIYGTVPIARATGGIVDSVLDIRqdssgTGFLFHQPEATALLEVLKTALGLWKNNPQLIQTA 505
                      **********************************999989999****************9999998887777777766 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.9e-06     0.023       1     149 [.      66     278 ..      66     305 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.9e-06
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgdd..gpleeev.........................................elvvrvprvp.lp.l 50 
                     vGG + +++ L+r La++ heV v+ p ++  +++ ++                                          +   r+++    +  
      CCG91220.1  66 VGGLADMIFSLSRSLAKLEHEVKVIIPFYSviDKSLYNIrflgsacvhmgcncehwiglheasldgniplwlveyadyfnR---RGIYDEsGReY 157
                     79***********************77765223333333688898999999998888888888899988888877764321...22222212202 PP

  Glyco_transf_4  51 lkrllrslaflrrlrrllkre..kpDvvHahspaalgaallalrr......rlgiplVltvHglye..............krllkarlkplsrll 123
                       +++r   f++++ ++ k+    pD+ H++++ + +++++   +       ++    lt+H+  +              ++ l     ++++  
      CCG91220.1 158 TDNAYRFGMFSKAVLEICKEMgwIPDIFHVNDWQTSLLSVFLKIWpnllspFKKSASLLTIHNICYqgkydamvlpylgiDWKLFTADTFEDYGQ 252
                     33445555566666677776688899999999988877766655567777766667777777777777777777666666555555556666666 PP

  Glyco_transf_4 124 ralerrllrradrviavSeatadelr 149
                      +l++  +  +d +++vS++ a+e++
      CCG91220.1 253 INLLKAGIVYSDFITTVSPTYAKEIL 278
                     66666667777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4109.65
//
Query:       CCG91221.1  [L=204]
Description: hypothetical protein MFUM_1010041 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1395.55
//
Query:       CCG91222.1  [L=346]
Description: Fatty acid desaturase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-32  112.1  15.4    3.9e-32  112.1  15.4    1.8  2  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   1.2    0.0051        92     128     170 ..      28      68 ..      15      69 .. 0.65
   2 !  112.1  15.4   2.2e-36   3.9e-32       3     245 ..      62     307 ..      60     314 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0051
  FA_desaturase 128 sksrrrkwrllawlllllawlglwlalllllglalllwlvpll 170
                    +k + +k  + +++ l++ +++lw++++l l++++ + ++pl+
     CCG91222.1  28 QKPSLWKSLWQLANTLIP-YAALWYLIYLSLPVSV-FLVLPLV 68 
                    444455455555566655.7999999999888876.7777765 PP

  == domain 2  score: 112.1 bits;  conditional E-value: 2.2e-36
  FA_desaturase   3 wlalllalllglfllgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHay..tngpdeDpdlaplal..srfeglfr 94 
                    +l+l+l++l+++f ++  +sl H+++Hg++fk++k n +++++l    g++++++y++w+ +H  HH +  + + ++  d ++        ++++r
     CCG91222.1  62 FLVLPLVVLCAAF-QIRIFSLFHDCCHGSFFKSKKANEIIGTFL----GILVFTPYHHWKWEHSIHHGNagNLDRRGVGDMWTWTVkeYLASPWWR 152
                    6788888*****9.77778************9999999986666....9**************779999884444454454444445599999999 PP

  FA_desaturase  95 yllrlllgllvlgwllalvlgl.wlrrlarrrapsksrrrkwrllawlllllaw...lglwlalllllglalllwlvplllllfllalvlnyveHy 186
                    +l    l++ ++ + ++++ ++ +++r+a   a +k   ++  +l  ++ +la+   lg+++++    +++    l+ ++l++++  ++ +yv+H+
     CCG91222.1 153 KLGYRILRHPLFLFGISPLVLFlIKYRFASKNAGKK---ARLSVLITNVGILALcvsLGFFFGWQKYIPIQ----LLIVFLAGSAGIWL-FYVQHQ 240
                    988888888887777766554313333333333333...33333333333333312255555555555544....44444444444444.****** PP

  FA_desaturase 187 g........gdwgerqvetsasir.saswllnlltgnlnyHieHHlfPgvpwyrLpelhrrlrellpe 245
                    +        + w+ + v+   s+    +++l ++t  ++yH +HHl P++p y L ++h+ +++++++
     CCG91222.1 241 FedvywergKKWDFQSVALEGSSFyKLPKILEWITASIGYHHVHHLSPQIPNYLLKQCHK-NEPIFEK 307
                    ********99999888888888888**********************************7.5776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2463.37
//
Query:       CCG91223.1  [L=264]
Description: thymidylate synthase (TS) (TSase) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.2e-116  386.8   0.0   4.7e-116  386.6   0.0    1.0  1  Thymidylat_synt  Thymidylate synthase


Domain annotation for each model (and alignments):
>> Thymidylat_synt  Thymidylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  386.6   0.0  2.6e-120  4.7e-116       2     268 .]       3     264 .]       2     264 .] 0.98

  Alignments for each domain:
  == domain 1  score: 386.6 bits;  conditional E-value: 2.6e-120
                      HHHHHHHHHHHH-EEEE-TTSSEEEEEEEEEEEEEGGGCB----SSST--HHHHHHHHHHHHTT--BTHHHHTTT--TTHHHHHHTTB-SSSHH CS
  Thymidylat_synt   2 qYldlvrkileeGeekedRtgtgtisvfgaqlrfdlsegefPllTtkkvflksvieEllWflsgetnvkeLqekgvkiWdewadeegdlgpvYG 95 
                       Yl+l++k+l+ G+ k+dRtg+gt+s+fg q+rfdl++g fPllTtkk+++ks++ EllWfl+g+tn++ L+++gv+iWdewad++g+lg++YG
       CCG91223.1   3 IYLQLLEKVLKFGVLKKDRTGVGTYSIFGDQIRFDLTKG-FPLLTTKKLHWKSIVYELLWFLRGDTNLAFLHQHGVTIWDEWADKNGNLGRIYG 95 
                      6*************************************9.****************************************************** PP

                      HHHHHBTSTTTSSB-HHHHHHHHHHHSTT-ST-EEE---GGGGGGSSS--SEEEEEEEE..SEETEEEEEEEEEEEETTTHHHHHHHHHHHHHH CS
  Thymidylat_synt  96 kqwrkfkaeegkkidqlakvidqlkenpdsRriivsawnpaeldkmaLppChvlfqfyvkdkkegkLslqlyqRSaDvflGvpFNiasyalLth 189
                      +qwr+++  +gk++dq+  vi+q+k++p+sRr+ivsawnp+eld+maLppChvlfqfyv++     Ls++lyqRSaDvflGvpFNiasy+lLth
       CCG91223.1  96 AQWRSWRGVNGKTVDQIGWVIEQIKKDPNSRRLIVSAWNPSELDEMALPPCHVLFQFYVNSP---YLSCHLYQRSADVFLGVPFNIASYSLLTH 186
                      ***********************************************************555...5**************************** PP

                      HHHHHHT-EEEEEEEEEEEEEEEGGGHHHHHHHHTS---S--EEEE--SSTHSGGG--GGGEEEES----SXXXXXXX. CS
  Thymidylat_synt 190 mlaqvtglkpgelihtigdaHiYsnhveqvkeqlereprelpklelnkekkvsiedfeledfelenYkphpkikakvav 268
                      ++a+v+gl p+e+i ++gd H+Y+ hv q+k ql+r+pr+lp+l++n++ k si+ + +ed+el nY+p+p ika+vav
       CCG91223.1 187 LIAHVCGLIPKEFIQSFGDLHLYTTHVSQAKLQLQRSPRPLPTLQINPHLK-SIDAVCFEDIELLNYDPYPPIKAAVAV 264
                      ***********************************************8887.*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2061.17
//
Query:       CCG91224.1  [L=837]
Description: DNA mismatch repair protein mutS [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-85  285.7   0.2    2.9e-85  285.1   0.2    1.3  1  MutS_V     MutS domain V
    4.5e-40  137.9   4.5    9.8e-40  136.8   4.5    1.5  1  MutS_III   MutS domain III
    1.3e-34  118.8   0.0      1e-33  115.9   0.0    2.3  2  MutS_I     MutS domain I
    2.6e-25   88.6   2.9    1.1e-24   86.6   2.9    2.2  1  MutS_IV    MutS family domain IV
    1.4e-17   64.3   0.3    4.1e-16   59.5   0.0    2.6  2  MutS_II    MutS domain II
  ------ inclusion threshold ------
       0.03   14.3   0.0       0.18   11.8   0.0    2.3  1  AAA_14     AAA domain
      0.041   13.4   0.0      0.095   12.2   0.0    1.5  1  C_LFY_FLO  DNA Binding Domain (C-terminal) Leafy/Floricaula


Domain annotation for each model (and alignments):
>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.1   0.2   1.1e-88   2.9e-85       1     187 [.     620     806 ..     620     807 .. 0.99

  Alignments for each domain:
  == domain 1  score: 285.1 bits;  conditional E-value: 1.1e-88
                 EEEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHHHH CS
      MutS_V   1 llitGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGlaia 99 
                 l++tGpnmaGksty+rqvali+lla++Gsfvpa++a+i+++d+iftR+g+sDdl+ g+stF+vEm+Eta+il+nate+slvilDE+GRGtst+dGl++a
  CCG91224.1 620 LILTGPNMAGKSTYIRQVALICLLAHTGSFVPAKRAKIGLLDRIFTRIGSSDDLSMGQSTFLVEMNETANILHNATERSLVILDEVGRGTSTFDGLSLA 718
                 599************************************************************************************************ PP

                 HHHHHHHHHTT--EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES--SS--HHHHHHHTT--HHHHHHHHHHHHHT CS
      MutS_V 100 lavaeyllekikaktlfatHyheltklaekleevknlhlavkeeeedivflykvkegaaeksyGikvaklaglPesvverArevlkel 187
                 +a++e l +++k+ tlfatHyhel+kla+ ++e+kn+++av+e++e++vfl+kv +g ++ksyGi+vaklag+Pe+v+e+A+++l+ +
  CCG91224.1 719 WAIVEDLYKTNKSLTLFATHYHELAKLADFYPEIKNYSMAVVETTENVVFLRKVVQGSMNKSYGIQVAKLAGIPERVIEKAKKILSLM 806
                 ***********************************************************************************99877 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   4.5   3.8e-43   9.8e-40       3     191 .]     281     568 ..     280     568 .. 0.90

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 3.8e-43
                 HHHTTSSS-.TTS.SSSS-HHHHH---SSHHHHHHHHHHHH--BS-HHHHHHHHHHHHH.T..TT.HHHHHHHHTT---HHHHHHHHHTT---HHHHHH CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III   3 lrnLeilen.lrggskegsLlgvldrTvTamGaRlLrewllqPltdleeInaRldaVee.leneelreelrellrrlpDleRllsrislgkakardlka 99 
                 ++ Le+++  +++    +sL++++d+T T+ G RlLr+wl+ P++ l +I++R++a++  +++++ re+lre l++++DleRlls++s+g +++r+l++
  CCG91224.1 281 QKTLEVIQAnSKS---GKSLFHAIDKTLTPGGGRLLRRWLSEPSRCLPVIQERQQAIALwINQQQKREQLREILKKIGDLERLLSKVSQGYVNPRELLS 376
                 678***8852333...34****************************************99*************************************** PP

                 HHHHHHHHHTTTTT---SSTHHHHH........HHHHHHHHHHB-SS--SSGGGS--B-T....................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxx....................................... RF
    MutS_III 100 llealkaleelvallekeklaesee........eslaelleeaideeplalekegedlra....................................... 151
                 l e+l++l+ + +ll++ + ++ ++        +++ + l++a+ e+p+ + keg+++++                                       
  CCG91224.1 377 LKESLQRLPLITELLSSIQDEKLRAmaqdisieKDMVAELDKALEENPPFSIKEGGIIKKgyceqldelrelseqgqkllidfeqqerektgiktlkik 475
                 *********9999997776554444666655543334566667777777777777777779999999999999999999999999************** PP

                 .....................................................HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH CS
                 .....................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 152 .....................................................iealeqelfqelleeveealerlrrlaealaeLDvllSlA 191
                                                                      +++leqelf++l+e+++ ++++l+++++++  LDv+ SlA
  CCG91224.1 476 ynqvfgylieishaqaksvpsyyerrqtlanverfitrelkeieqkilgsknrANELEQELFSKLREKISLRIPVLQKTVDVINKLDVFSSLA 568
                 ***************************************************9999999***********999********************9 PP

>> MutS_I  MutS domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0     4e-37     1e-33       1     109 [.      11     114 ..      11     118 .. 0.95
   2 ?   -0.4   0.1      0.52   1.3e+03      31      81 ..     753     803 ..     741     822 .. 0.53

  Alignments for each domain:
  == domain 1  score: 115.9 bits;  conditional E-value: 4e-37
                 HHHHHHHHCCCHH.-TTCEEEEEETTEEEEECHHHHHHHHHCSSSSTT.ESSSSC.EEEEEEEHHHHHHHHHHHHHTT-EEEEEEE-S-HHHHS.S--E CS
      MutS_I   1 tplmkqylelkkk.ykdavlffrvGdfYelfgeDAviaareleitltkrkkssekeipmagvPehalekylrkLvekgykVavveqtetpaekkgvvkr 98 
                 tp+m+qy+e+k+k  +d++l+fr+Gdf+elf +DA+ +ar+l+++lt+r+      +pm+gvP +++e y++kLv++g++Va+++q+e+p+  + +vkr
  CCG91224.1  11 TPMMRQYWEIKQKlPPDVLLLFRLGDFFELFLDDAKEGARILNLVLTQRQ----G-VPMCGVPVENIEGYVSKLVKAGKRVALCDQMEQPKPGQ-LVKR 103
                 8***********9899*******************************443....3.9***********************************99.**** PP

                 EEEEEEBTTC- CS
      MutS_I  99 evvrviTpGtl 109
                 e+vr+++pG  
  CCG91224.1 104 EIVRILSPGSN 114
                 *********75 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.52
                 CHHHHHHHHHCSSSSTT.ESSSSC.EEEEEEEHHHHHHHHHHHHHTT-EEE CS
      MutS_I  31 geDAviaareleitltkrkkssekeipmagvPehalekylrkLvekgykVa 81 
                 ++ +  + ++ e ++  rk  +++  ++ g+   +l  + ++++ek +k+ 
  CCG91224.1 753 KNYSMAVVETTENVVFLRKVVQGSMNKSYGIQVAKLAGIPERVIEKAKKIL 803
                 444445555555444444422222235566666666666666666666654 PP

>> MutS_IV  MutS family domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   2.9   4.3e-28   1.1e-24       1      90 [.     437     526 ..     437     528 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 4.3e-28
                 TTSHHHHHHHHHHHHHHHHHHHHHCCCCCCCT-TTBEECCCSSSEEEEEE-TCCCTTT--SEEEEEECTCEEEEECCCHHHHHHHHHHHH CS
     MutS_IV   1 gfdeeLdelrdrleelekeleeleekereklgikslkveynkvlGyylevtrseakkvpkefirlqtlknseryttaelkkleaelleae 90 
                 g+ e+Ldelr++ e+ +k l + e++erek+gik+lk++yn+v+Gy++e++  +ak+vp++++r+qtl n er++t elk++e+++l  +
  CCG91224.1 437 GYCEQLDELRELSEQGQKLLIDFEQQEREKTGIKTLKIKYNQVFGYLIEISHAQAKSVPSYYERRQTLANVERFITRELKEIEQKILGSK 526
                 67899********************************************************************************99876 PP

>> MutS_II  MutS domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   1.6e-19   4.1e-16       1     136 [.     126     262 ..     126     263 .. 0.90
   2 ?    2.0   0.2     0.092   2.3e+02      30      71 ..     352     397 ..     332     422 .. 0.75

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 1.6e-19
                 -EEEEEEEETTTSEEEEEEEETTTTEEEEEEEEE-HHHHHHHHHH-ESEEEEESS-SCCCH..HHHHHCHCTTT-E...EEEESCCCCSHCCHHHHCHH CS
     MutS_II   1 nylaAisekregrrvGlafiDlstgefvvsefedfeeleaeLsrlsPkElllpedlsesta..eeessklrelrsr...vgvretvefesekaserlee 94 
                 ++++++++   ++ +G+a +D++tg f   + e+++e+  ++ r++P+E++l e ++ s    +e+  +l e +s    v ++  + f++e+a++ l  
  CCG91224.1 126 QFCMSLYR--WKKKFGIALMDITTGLFLSGQLENEKEIMELVNRYGPVEVILAEGAECSFIrqNEHGKELIEGISQecyVHRYFPWAFDLEEAKNFLMA 222
                 58999999..999******************************************977755897777777776654333888899************** PP

                 HB--STTTTTTTGGG-HHHHHHHHHHHHHCCCCCSCCCCT-C CS
     MutS_II  95 dfsvedldgfglekekklalaAlgalisYleetqkekelshl 136
                 +f+v +ldg gl  e + a++A+gal++Y  e   + ++sh+
  CCG91224.1 223 HFKVSSLDGYGL-REMDAAICAAGALLRYFSEVLHQ-SISHI 262
                 ************.9*******************999.99997 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.092
                 EEEEE-HHHHHHHHH..H-ESEEEEESS-SCCCH..HHHHHCHCTT CS
     MutS_II  30 sefedfeeleaeLsr..lsPkElllpedlsesta..eeessklrel 71 
                  ++ d e+l++++s+  ++P+Ell  +  ++     +e +s+++++
  CCG91224.1 352 KKIGDLERLLSKVSQgyVNPRELLSLKESLQRLPliTELLSSIQDE 397
                 566789999999999*9*******8777666655665555555544 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     7e-05      0.18       2      76 ..     617     708 ..     616     738 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7e-05
      AAA_14   2 rkilvitGaRrvGKTtllkqlikell.......vkkesilyinldderdkkladpe.......kllelileklke.......ekktylflDEiqev 76 
                 ++il++tG+  +GK+t+++q++   l       v+  +   i l d  ++++  ++       ++l ++ e   +        ++++++lDE+ + 
  CCG91224.1 617 SRILILTGPNMAGKSTYIRQVALICLlahtgsfVP-AKRAKIGLLDRIFTRIGSSDdlsmgqsTFLVEMNE---TanilhnaTERSLVILDEVGRG 708
                 589*****************984444777777533.33333333333332222221122322222222222...1234445678899999999765 PP

>> C_LFY_FLO  DNA Binding Domain (C-terminal) Leafy/Floricaula
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.7e-05     0.095      12      71 ..     423     483 ..     416     497 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.7e-05
   C_LFY_FLO  12 ehpfivtepgevargkkngldylfhlyeqcrkfliqvqalakek.gekcptkvtnqvfrya 71 
                 + pf + e g + +g  + ld l +l eq +k+li+ ++  +ek g k+ +   nqvf y 
  CCG91224.1 423 NPPFSIKEGGIIKKGYCEQLDELRELSEQGQKLLIDFEQQEREKtGIKTLKIKYNQVFGYL 483
                 469*********************************999998873667766678****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1210  (0.0674884); expected 358.6 (0.02)
Passed bias filter:                      744  (0.041497); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.50
# Mc/sec: 5047.17
//
Query:       CCG91225.1  [L=123]
Description: Uncharacterized small membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-23   82.1   3.4    3.6e-23   81.6   3.4    1.2  1  DUF423           Protein of unknown function (DUF423)


Domain annotation for each model (and alignments):
>> DUF423  Protein of unknown function (DUF423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   3.4     2e-27   3.6e-23       1      88 []      19     101 ..      19     101 .. 0.93

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 2e-27
      DUF423   1 lGAfgaHglkkk.leekalesfetavqYqlyhalallavallaskaaasrllklagllflaGivlFSgslyllaltgkkvlgaitPiGG 88 
                 +GA+gaHglk+   e++ +e+++tavqY+++h lall+++        ++ + + ++lf++Giv+FSgsly+l+l++   ++++tPiGG
  CCG91225.1  19 MGAYGAHGLKPAvQESHFIEMWKTAVQYHFIHVLALLFIGNQ------RKGFWIPFFLFFLGIVFFSGSLYTLVLSKSFYWAKFTPIGG 101
                 7*********88355599999*******************96......6899999**********************999********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 804.94
//
Query:       CCG91226.1  [L=868]
Description: ATP-dependent protease, Hsp 100, part of multi-chaperone system with DnaK, DnaJ, and GrpE [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-59  199.0   2.9      1e-55  188.5   0.0    3.4  3  AAA_2            AAA domain (Cdc48 subfamily)
    1.3e-36  124.7   3.2    1.3e-36  124.7   3.2    3.0  2  AAA_lid_9        AAA lid domain
    1.6e-27   95.4   2.6    1.1e-12   47.9   0.1    3.1  2  Clp_N            Clp amino terminal domain, pathogenicity isl
    3.8e-26   91.0   2.9    3.5e-25   87.9   0.4    3.7  2  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
      2e-25   89.8   0.1    6.8e-14   52.4   0.0    3.0  2  AAA              ATPase family associated with various cellul
      2e-19   70.0   0.1    8.6e-14   51.7   0.0    3.0  2  AAA_5            AAA domain (dynein-related subfamily)
    7.6e-12   45.9   8.9    2.4e-05   24.8   0.1    5.4  4  AAA_16           AAA ATPase domain
    6.5e-10   39.0   0.1    1.4e-06   28.1   0.0    2.7  2  Sigma54_activat  Sigma-54 interaction domain
    5.6e-09   36.4   2.9     0.0076   16.5   0.0    4.9  2  AAA_22           AAA domain
    3.2e-07   30.2   0.0      0.042   13.6   0.0    2.9  2  IstB_IS21        IstB-like ATP binding protein
    3.7e-07   30.2   0.0      0.027   14.5   0.0    3.1  2  AAA_14           AAA domain
    6.1e-06   26.1   0.9        2.4    7.9   0.0    4.7  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    7.8e-06   25.9   0.0      0.092   12.7   0.0    3.2  2  NACHT            NACHT domain
    1.5e-05   25.5   1.4      0.027   15.0   0.0    3.8  3  AAA_18           AAA domain
    2.1e-05   24.1   0.0      0.087   12.3   0.0    2.7  2  AAA_7            P-loop containing dynein motor region
    4.3e-05   23.0   0.1       0.87    8.9   0.1    3.7  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00011   22.4   0.0       0.34   11.1   0.0    2.7  2  Roc              Ras of Complex, Roc, domain of DAPkinase
    0.00015   22.1   0.0       0.31   11.4   0.0    2.9  2  RNA_helicase     RNA helicase
    0.00015   21.8   7.7        1.9    8.3   0.0    4.2  3  ATPase_2         ATPase domain predominantly from Archaea
    0.00021   20.6   0.7      0.023   14.0   0.0    3.3  2  Zeta_toxin       Zeta toxin
    0.00039   20.2   0.1      0.011   15.5   0.0    2.8  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
    0.00041   20.3   0.0        2.4    8.2   0.0    3.1  3  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00046   20.4   0.0      0.087   13.0   0.0    2.9  2  AAA_33           AAA domain
    0.00084   19.6   3.9        2.2    8.5   0.0    4.2  3  AAA_28           AAA domain
     0.0013   18.5   0.0          1    9.0   0.0    2.9  2  AAA_24           AAA domain
     0.0016   18.3   0.0        0.9    9.4   0.0    3.5  2  AAA_3            ATPase family associated with various cellul
     0.0022   17.9   1.1        2.4    8.0   0.0    3.4  2  RsgA_GTPase      RsgA GTPase
     0.0028   18.0   0.3       0.18   12.1   0.1    3.3  2  AAA_19           AAA domain
      0.003   17.3   0.3          4    7.1   0.0    3.9  3  AAA_30           AAA domain
     0.0038   17.1   0.1          2    8.3   0.0    3.2  2  NTPase_1         NTPase
     0.0043   17.1   0.5       0.32   11.0   0.0    3.3  3  ResIII           Type III restriction enzyme, res subunit
     0.0046   15.9  21.8     0.0046   15.9  21.8    1.8  1  Spc7             Spc7 kinetochore protein
     0.0055   16.1   8.9      0.011   15.1   8.9    1.5  1  DUF4407          Domain of unknown function (DUF4407)
     0.0057   17.2   2.4        2.2    8.8   0.0    3.6  3  ABC_tran         ABC transporter
  ------ inclusion threshold ------
      0.013   16.0  27.3        1.4    9.4   0.0    4.3  2  AAA_23           AAA domain
      0.014   14.9   1.3        1.5    8.4   0.0    3.0  2  AAA_25           AAA domain
      0.015   15.4   0.0      0.071   13.2   0.0    2.0  2  Torsin           Torsin
      0.028   14.2   3.4      0.068   13.0   2.7    2.1  1  Bacillus_HBL     Bacillus haemolytic enterotoxin (HBL)
      0.078   12.8  10.0       0.17   11.7  10.0    1.6  1  OEP              Outer membrane efflux protein
       0.13   10.1   5.7       0.21    9.5   5.7    1.3  1  V_ATPase_I       V-type ATPase 116kDa subunit family
        0.2   11.5  27.7      0.052   13.4  22.5    2.4  2  ERM              Ezrin/radixin/moesin family
       0.54    9.1   5.8        1.3    7.9   5.4    1.7  2  LMBR1            LMBR1-like membrane protein
       0.88    7.6  28.3       0.78    7.8  25.4    2.2  2  HOOK             HOOK protein
        2.3    7.2  16.3        4.2    6.4  16.3    1.3  1  Atg14            Vacuolar sorting 38 and autophagy-related su
          3    7.9  13.2          5    7.2   0.0    4.0  3  DUF87            Helicase HerA, central domain
        3.1    8.1   7.7         29    5.0   3.2    3.7  2  WXG100           Proteins of 100 residues with WXG
        3.4    7.5  12.2       0.61   10.0   6.0    2.7  2  rRNA_proc-arch   rRNA-processing arch domain
        3.8    7.7  32.2      0.072   13.2  15.8    3.7  2  Cep57_CLD_2      Centrosome localisation domain of PPC89
          4    7.4  35.9       0.36   10.9  27.7    3.1  1  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
        4.1    7.7  37.2        1.8    8.9   6.9    3.6  2  ABC_tran_CTD     ABC transporter C-terminal domain
        5.9    7.4  19.2         12    6.5  16.1    3.1  1  DUF2408          Protein of unknown function (DUF2408)
        6.9    6.1  10.1        1.9    8.0   6.3    1.9  2  Exonuc_VII_L     Exonuclease VII, large subunit
        9.7    5.5  28.0        1.9    7.8  23.1    2.4  2  GAS              Growth-arrest specific micro-tubule binding


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0036       1.2       6      82 ..     204     287 ..     199     313 .. 0.82
   2 ?   -1.7   0.4       7.8   2.6e+03     141     166 ..     517     547 ..     427     550 .. 0.66
   3 !  188.5   0.0   2.9e-58     1e-55       1     171 []     602     768 ..     602     768 .. 0.99

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0036
                 EEEE--TTSSHHHHHHHHHHHTT-..........-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.EEEEETGGG--- CS
       AAA_2   6 illlgptgvGktelakalaellfv......kkekkliradaselleeeevehlvsrligappgyvgaeegG.ivllDEidKihp 82 
                   l+g+ gvGkt + + +a+ +         k+++++ +d+ +l+ + + +   ++ + a    ++ ++g  i+++DEi  +  
  CCG91226.1 204 PVLIGEPGVGKTAIVEGIAQRIVKgdvpesLKNRRIVALDMGALIAGAKYRGEFEERLKAVLKEISSAQGQiILFIDEIHTVVG 287
                 568999*******999999988668999988999************998888888888888888888877757899**987665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 7.8
                 S.....TTTTSGGG--HHHHHHTT--HHHHT CS
       AAA_2 141 k.....eeeeekkkeeveeelkkglipEllg 166
                 +     +ee+ +k+ +++ee++  li+E++ 
  CCG91226.1 517 EleskiSEEDGSKHRMIQEEVTPDLIAEIVS 547
                 0222234455555566666666666666655 PP

  == domain 3  score: 188.5 bits;  conditional E-value: 2.9e-58
                 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG-------- CS
       AAA_2   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessg 87 
                 rpi+s+++lgptgvGktela++lae lf ++e+++ir+d+se++e    +h+v+rligappgyvg+eegG            ++llDEi+K+hp     
  CCG91226.1 602 RPIGSFIFLGPTGVGKTELARSLAEALF-DSEENMIRLDMSEYME----KHTVARLIGAPPGYVGFEEGGqlteavrrkpysVLLLDEIEKAHP----- 690
                 699*************************.****************....*********************************************..... PP

                 -----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2  88 advSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpei 171
                       +V++++Lqile+g+ltd +gr+vd+kn+++Imt+++gs    +++ ++ + +e+++++++eel++ ++pE+l+R++e+
  CCG91226.1 691 ------EVFNLFLQILEDGRLTDGHGRTVDFKNTIIIMTSNIGSVYLTESALMGGTIREDVRTKIMEELRAVFRPEFLNRIDEV 768
                 ......*******************************************99999***************************985 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.7   3.2   3.7e-39   1.3e-36       1     103 [.     344     446 ..     344     447 .. 0.98
   2 ?    1.6   1.9      0.78   2.6e+02      69      98 ..     472     501 ..     451     508 .. 0.61

  Alignments for each domain:
  == domain 1  score: 124.7 bits;  conditional E-value: 3.7e-39
   AAA_lid_9   1 seeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeeekekaer 99 
                 ++e+ti+iLrglk++ye hHgv+i+d+al+aa+ lS+rYisdrflPdkAIDl+Deaaa+++++ es peele+le+++ +le e+eal+ke+++++++r
  CCG91226.1 344 TVEDTISILRGLKNRYEVHHGVRIQDAALVAAAVLSHRYISDRFLPDKAIDLVDEAAAKLKTEMESMPEELESLERKVLQLEIEREALRKEKDEASQKR 442
                 589************************************************************************************************ PP

   AAA_lid_9 100 lkel 103
                 l+el
  CCG91226.1 443 LEEL 446
                 *987 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.78
   AAA_lid_9  69 eeleklekelaklekekealekeeekekae 98 
                  el+ l++el+k e+e e++++e + +k +
  CCG91226.1 472 MELQHLREELQKAEQEIEKAQREYDLNKVA 501
                 346666777777777777777666655544 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.1   3.3e-15   1.1e-12       2      52 ..      16      66 ..      15      67 .. 0.96
   2 !   46.4   0.3   9.1e-15   3.1e-12       1      53 []      94     147 ..      94     147 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 3.3e-15
                HHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHH CS
       Clp_N  2 qelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekll 52
                q++A ++ghq +++EHLL AL+ +++Gl  r+L+++Gv l+ lr+++e++l
  CCG91226.1 16 QAIATKYGHQVVDVEHLLEALITQEGGLVPRILERCGVPLKLLREELENEL 66
                8999********************************************997 PP

  == domain 2  score: 46.4 bits;  conditional E-value: 9.1e-15
                 HHHHHHHTTCSSB-HHHHHHHHHHSC.TSHHHHHHHHTTSSHHHHHHHHHHHHC CS
       Clp_N   1 AqelAkslghqyistEHLLlALleed.dGlaarlLkkaGvdldalrkaiekllg 53 
                 A e+Ak+l+++y+s+EHLLlA+lee+ + + arl+k  G+d ++l + + +++g
  CCG91226.1  94 AREEAKRLKDEYVSVEHLLLAMLEESsKTVVARLFKSHGLDRETLLRVLTEVRG 147
                 78*********************99636799********************997 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       2.1   7.1e+02      24      40 ..     531     547 ..     508     551 .. 0.52
   2 !   87.9   0.4     1e-27   3.5e-25       1      80 [.     774     853 ..     774     854 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 2.1
                    TTEEEEEHHHHHHHHHH CS
  ClpB_D2-small  24 rgvelevtdealdalae 40 
                    r ++ evt+++++ +++
     CCG91226.1 531 RMIQEEVTPDLIAEIVS 547
                    33555555555555554 PP

  == domain 2  score: 87.9 bits;  conditional E-value: 1e-27
                    SCHHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSEEE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtvr 80 
                    L+ +e+k+Ivdl+l  +++rl e+ + le++++a+++la +gy+p yGARpLrri+qreie+pl+++i++ge++e+d+v 
     CCG91226.1 774 LSLNEIKQIVDLQLVLIKNRLLEKYIALELSESAKEHLAHEGYSPIYGARPLRRILQREIETPLSRKIIAGEIVEHDHVF 853
                    67789**********************************************************************99985 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0     2e-16   6.8e-14       2     112 ..     205     321 ..     204     340 .. 0.82
   2 !   34.0   0.0   9.9e-11   3.4e-08       2     111 ..     608     726 ..     607     749 .. 0.81

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 2e-16
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 +l+G pG+GKT++++ +a+ +          +++++ +++  l+   ky ge e+++++++ke+++ +++ ilfiDEi+ ++++    + e + ++ n 
  CCG91226.1 205 VLIGEPGVGKTAIVEGIAQRIvkgdvpeslkNRRIVALDMGALIagAKYRGEFEERLKAVLKEISSAQGQIILFIDEIHTVVGAG---KAEGAIDAGNM 300
                 599*****************77766666666699********997778****************998877**************9...88889999999 PP

                 HHHHHHHTTTSSSTEEEEEEESS..G CS
         AAA  89 Llteldgvkkkeskvivigatnr..p 112
                 L ++l + +       +igat+   +
  CCG91226.1 301 LKPMLARGEL-----HCIGATTLdeY 321
                 9999988877.....58888887442 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 9.9e-11
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHH.HHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgese.kkirelfkeakekakp.silfiDEidalaksrsgseseeee 83 
                 ++ Gp G+GKT la+++a+ l   + +++++++se ++k            yvg  e  ++ e +++   k  p s+l++DEi++ +++          
  CCG91226.1 608 IFLGPTGVGKTELARSLAEALfdsEENMIRLDMSEYMEKhtvarligappgYVGFEEgGQLTEAVRR---K--PySVLLLDEIEKAHPEV--------- 692
                 789*****************8665699**********999****99999997775541444444433...3..669**********9999......... PP

                 HHHHHHHHHHHHTTTS........SSTEEEEEEESS CS
         AAA  84 rvvnqLlteldgvkkk........eskvivigatnr 111
                    n +l+ l++ +           +++i+i+++n 
  CCG91226.1 693 --FNLFLQILEDGRLTdghgrtvdFKNTIIIMTSNI 726
                 ..9*****9999999899999999555899999996 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.6e-05     0.019       3      75 ..     205     283 ..     203     288 .. 0.56
   2 !   51.7   0.0   2.6e-16   8.6e-14       2     124 ..     607     728 ..     606     737 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.6e-05
                 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHH...HH--B--.........--------...G-SEEEEESGG CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nreveyvqltrdtteed...lkgrreikngttslvdsplvraar...egeilvlDEve 75 
                 +L+G+pG+gK+ ++e +a+++ +  v + + +r++ + d   l+ + +++++ +++ + +l+ ++       il++DE++
  CCG91226.1 205 VLIGEPGVGKTAIVEGIAQRIvKGDVPESLKNRRIVALDmgaLIAGAKYRGEFEERLKAVLK-EISsaqGQIILFIDEIH 283
                 79******************995555444444444443311144444443333333333333.22223155566777776 PP

  == domain 2  score: 51.7 bits;  conditional E-value: 2.6e-16
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--..........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreikngttslvd.splvraar..egeilvlDEveraesevlnsLlslleerrl 94 
                 ++ +Gp+G+gK+ela++la+al   + ++    +++++++ ++   +   +g   +++ + l++a+r    ++l+lDE+e+a++ev+n +l++le+ rl
  CCG91226.1 607 FIFLGPTGVGKTELARSLAEALfdsEENMIRLDMSEYMEKHTVARLIGAPPGYVGFEEgGQLTEAVRrkPYSVLLLDEIEKAHPEVFNLFLQILEDGRL 705
                 799********************888888888999*****99999999777766666527899999976679*************************** PP

                 E..-SSSEEE---......-EEEEEESS-- CS
       AAA_5  95 lleeggelvkaknddllerfrviatanpld 124
                   +  g+ v++kn      + +i+t+n  +
  CCG91226.1 706 T-DGHGRTVDFKN------TIIIMTSNIGS 728
                 *.44445556666......89999999766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1     7e-08   2.4e-05       2      51 ..     182     228 ..     181     307 .. 0.78
   2 ?    0.0   0.6       2.8   9.6e+02      78     126 ..     427     484 ..     380     534 .. 0.62
   3 !   18.3   0.0   7.2e-06    0.0024       1      51 [.     575     631 ..     575     681 .. 0.87
   4 ?   -0.7   0.0       4.8   1.6e+03     134     157 ..     674     699 ..     662     709 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 7e-08
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 ++GR++e+++  ++l+r  ++ p   +l+Ge+GvGK+++v+ +++++ k 
  CCG91226.1 182 VIGRDAEIRRTIQVLCRRTKNNP---VLIGEPGVGKTAIVEGIAQRIVKG 228
                 78******888888887776655...899***************988765 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 2.8
      AAA_16  78 reellrqlldeaesaeleawrekleeala....avpelagaea.............srllellkrl 126
                 ++e lr+++dea+++ le+  ++l e  +             +             ++l+e+l+++
  CCG91226.1 427 EREALRKEKDEASQKRLEELEKELAELRSerdrM--------RanweaekgsimelQHLREELQKA 484
                 3344444444433333333333222222222220........123334444444445555555554 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 7.2e-06
      AAA_16   1 rlvGReeeleqLlsalervrsgrp......elvllsGesGvGKsslvrellralekd 51 
                 r+vG +e ++++ +a+ r+rsg        ++ ++ G+ GvGK+ l+r+l++al ++
  CCG91226.1 575 RVVGQDEAVNAVVDAILRARSGLKdpkrpiGSFIFLGPTGVGKTELARSLAEALFDS 631
                 57999*******99999999997788999**********************998776 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 4.8
      AAA_16 134 erp.lvlvlDdlqwadeaslql.laa 157
                 ++p  vl+lD++++a ++  +l l+ 
  CCG91226.1 674 RKPySVLLLDEIEKAHPEVFNLfLQI 699
                 344489*********99998884443 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0068       2.3       3     103 ..     184     283 ..     182     292 .. 0.56
   2 !   28.1   0.0   4.2e-09   1.4e-06      24     143 ..     606     725 ..     576     751 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0068
                      --SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH.......HSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHH CS
  Sigma54_activat   3 gesealkelleqikkvaktdlsvlitGesGtGKellaraihe.......askrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlf 89 
                      g++++++++++ + +   t+ + ++ Ge G+GK+ + + i +        ++ k++++va++++a+ +           +G F    k+    +
       CCG91226.1 184 GRDAEIRRTIQVLCRR--TKNNPVLIGEPGVGKTAIVEGIAQrivkgdvPESLKNRRIVALDMGALIA----G---AKYRGEFEERLKAVLKEI 268
                      5556666666555443..34445566*********999998844434332223444555555554322....1...234566666666555666 PP

                      HHTTTS.EEEEETGG CS
  Sigma54_activat  90 ekadgG.tlfLDeig 103
                      ++a+g  +lf+Dei+
       CCG91226.1 269 SSAQGQiILFIDEIH 283
                      666654235666666 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 4.2e-09
                      -EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHHHHHH CS
  Sigma54_activat  24 svlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQekLlr 115
                      s + +G +G+GK+ lar++ ea   +e+++++++++++ e+   ++L G   G + G e+  +   ++++   ++l+LDei++  +e+ + +l+
       CCG91226.1 606 SFIFLGPTGVGKTELARSLAEALFDSEENMIRLDMSEYMEKHTVARLIGAPPG-YVGFEEGGQltEAVRRKPYSVLLLDEIEKAHPEVFNLFLQ 698
                      56789*********************************************998.78877655444567777889******************** PP

                      HHHHSEEESBTSSSEEE--EEEEEEESS CS
  Sigma54_activat 116 vlqegevervGsskeikvdvriiaatne 143
                      +l++g+++  G+ ++++++  ii  t++
       CCG91226.1 699 ILEDGRLTD-GHGRTVDFKNTIIIMTSN 725
                      *****9987.777777776666666653 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0    0.0001     0.035       4     103 ..     200     285 ..     197     305 .. 0.72
   2 !   16.5   0.0   2.2e-05    0.0076       7     118 ..     606     702 ..     602     726 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 0.0001
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl.lrellralglelkaerlsseellealeqalraravielliiDEaq 101
                 t++  v++Ge+G+GKT  ++ ++++             +v+ ++p+s + + + + ++   +   + +  ++ ee l+a+ + +++++ + +l iDE++
  CCG91226.1 200 TKNNPVLIGEPGVGKTAIVEGIAQR-------------IVKGDVPESLKNRRIvALDMGALIAGAKYR--GEFEERLKAVLKEISSAQGQIILFIDEIH 283
                 778889**************99998.............578888888866666366666666655555..55555555555555555554999999999 PP

      AAA_22 102 hl 103
                  +
  CCG91226.1 284 TV 285
                 75 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.2e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrs 105
                 + +  G++G+GKT l+r l+e l         +   ++ ++++ ++  +    ++r +g +  +      e   +l++a+r++   ++l++DE+++  +
  CCG91226.1 606 SFIFLGPTGVGKTELARSLAEALFD------SEENMIRLDMSEYMEKHT----VARLIGAPPGY---VGFEEGGQLTEAVRRKPY-SVLLLDEIEKA-H 689
                 56778*****************943......377778999999886655....57778877777...666667888999999999.9**********.9 PP

      AAA_22 106 eealeeLrsllnl 118
                 +e+++ + ++l++
  CCG91226.1 690 PEVFNLFLQILED 702
                 ****999888876 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   0.00013     0.042      45     108 ..     199     266 ..     185     285 .. 0.79
   2 !   13.3   0.0   0.00015     0.051      50      79 ..     607     636 ..     602     657 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00013
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavr....aglsvlfvrvedLveelkrarrdgklaralkrllk 108
                 ++k+n vl+G +GvGK+ +   ++++ v+    + l+ + + + d+ + ++ a+  g+++++lk++lk
  CCG91226.1 199 RTKNNPVLIGEPGVGKTAIVEGIAQRIVKgdvpESLKNRRIVALDMGALIAGAKYRGEFEERLKAVLK 266
                 57899*********************998332233455666677889999999999999988887765 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00015
   IstB_IS21  50 ivllGpsGvGKshlaialgveavraglsvl 79 
                 +++lGp+GvGK+ la +l+ +   ++ +++
  CCG91226.1 607 FIFLGPTGVGKTELARSLAEALFDSEENMI 636
                 799****************99887666555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   8.1e-05     0.027       6      80 ..     205     289 ..     201     327 .. 0.72
   2 !   12.2   0.0    0.0004      0.14       6      86 ..     608     699 ..     605     737 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.1e-05
      AAA_14   6 vitGaRrvGKTtllkqlikell.......vkkesilyinldderd.kkla.dpekllelileklke.ekktylflDEiqevpewe 80 
                 v+ G   vGKT +++ ++++          k+++i+ +++      +k++ ++e+ l+++l+++++ +++ +lf+DEi+ v ++ 
  CCG91226.1 205 VLIGEPGVGKTAIVEGIAQRIVkgdvpesLKNRRIVALDMGALIAgAKYRgEFEERLKAVLKEISSaQGQIILFIDEIHTVVGAG 289
                 5677778*********99888899989777777777777666443434443556566666666433489999*******995543 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.0004
      AAA_14   6 vitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe...............kllelileklkeekktylflDEiqev.pewekalksl 86 
                 +  G+  vGKT l++ l++ l+ ++e+++ +++ +  +k     +               +l e++++    +  ++l+lDEi ++ pe+++   ++
  CCG91226.1 608 IFLGPTGVGKTELARSLAEALFDSEENMIRLDMSEYMEKHTVA-RligappgyvgfeeggQLTEAVRR----KPYSVLLLDEIEKAhPEVFNLFLQI 699
                 567999************9999889999999999877744221.112333333332222233333333....3345699****98744554444444 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.4     0.011       3.7      37      95 ..     205     284 ..     182     291 .. 0.53
   2 !    7.9   0.0    0.0071       2.4      27      57 ..     598     628 ..     570     646 .. 0.71
   3 ?    2.0   0.0      0.47   1.6e+02      83     113 ..     675     705 ..     663     744 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.011
      RuvB_N  37 llyGpPGlGkttlakiiakel.....gvklkit......sgPvl.......ekagdlaalltnleekd...vlfideihr 95 
                 +l+G PG+Gkt++ + ia+ +       +lk         g  +       e +  l a+l+++++ +   +lfideih 
  CCG91226.1 205 VLIGEPGVGKTAIVEGIAQRIvkgdvPESLKNRrivaldMGALIagakyrgEFEERLKAVLKEISSAQgqiILFIDEIHT 284
                 57788888888887766665411111222222100011123333111111122345667777665443333778888876 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0071
      RuvB_N  27 kkreealdhvllyGpPGlGkttlakiiakel 57 
                 k  ++++   ++ Gp G+Gkt la+ +a+ l
  CCG91226.1 598 KDPKRPIGSFIFLGPTGVGKTELARSLAEAL 628
                 44566788899**************999876 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.47
      RuvB_N  83 eekdvlfideihrlsraveevlysamedfrl 113
                 ++  vl++dei + +++v +++ + +ed rl
  CCG91226.1 675 KPYSVLLLDEIEKAHPEVFNLFLQILEDGRL 705
                 5678************************886 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00027     0.092       4      31 ..     205     232 ..     204     241 .. 0.91
   2 !    9.4   0.0    0.0028      0.94       4      29 ..     608     633 ..     606     692 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00027
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpq 31 
                 +l Ge+G+GKT+ ++++a+ + +g+ p+
  CCG91226.1 205 VLIGEPGVGKTAIVEGIAQRIVKGDVPE 232
                 689******************9999886 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0028
                 EEEC-TTTCHHHHHHHHHHHHCTS-S CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegkl 29 
                 i  G+ G+GKT L+++la+a+ +++ 
  CCG91226.1 608 IFLGPTGVGKTELARSLAEALFDSEE 633
                 678***************99977665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.054        18       3      22 ..     206     225 ..     205     284 .. 0.74
   2 ?    0.4   0.6       2.6   8.9e+02      41      83 ..     428     476 ..     404     497 .. 0.76
   3 !   15.0   0.0   7.9e-05     0.027       3      41 ..     609     645 ..     608     732 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.054
      AAA_18   3 ltGtpGvGKttlakeLskrl 22 
                 l G pGvGKt + + +++r 
  CCG91226.1 206 LIGEPGVGKTAIVEGIAQRI 225
                 8899**********999884 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 2.6
      AAA_18  41 vdpealdeskrldedkldklldaleenss.......aleegknlvidghl 83 
                 +++   +e++++ +++l++l ++l e +s       ++e +k  +++ ++
  CCG91226.1 428 REAL-RKEKDEASQKRLEELEKELAELRSerdrmraNWEAEKGSIMELQH 476
                 4444.678888888888888888888888888888888888887877544 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 7.9e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllev 41 
                   G+ GvGKt+la+ L++ l   +    +++ +++++++
  CCG91226.1 609 FLGPTGVGKTELARSLAEAL--FDSEENMIRLDMSEYME 645
                 67*****************8..44444444444444443 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0     0.003         1      31      57 ..     199     225 ..     186     285 .. 0.76
   2 !   12.3   0.0   0.00026     0.087      36      82 ..     607     653 ..     603     656 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.003
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkl 57 
                 + k++ +l+G+ G+GKt+i++ + +++
  CCG91226.1 199 RTKNNPVLIGEPGVGKTAIVEGIAQRI 225
                 45667889************9977665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00026
       AAA_7  36 vllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdii 82 
                 +++ GptG+GKt ++++l ++l +++ +++ + +s +++ +++ ++i
  CCG91226.1 607 FIFLGPTGVGKTELARSLAEALFDSEENMIRLDMSEYMEKHTVARLI 653
                 689*******************99**************999998887 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0088         3      19      63 ..     198     242 ..     179     284 .. 0.80
   2 !    8.9   0.1    0.0026      0.87      25      52 ..     607     634 ..     603     776 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0088
  Mg_chelatase  19 aaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasv 63 
                      + n +l+G pG GKt + + +++ + + +  e+l+ ++i ++
    CCG91226.1 198 RRTKNNPVLIGEPGVGKTAIVEGIAQRIVKGDVPESLKNRRIVAL 242
                   44567889*************999998888888888888888766 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0026
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllpplsee 52 
                   ++++Gp G GKt la+ l++ l + +e+
    CCG91226.1 607 FIFLGPTGVGKTELARSLAEALFDSEEN 634
                   7899**************9998775543 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0081       2.7       3      22 ..     205     224 ..     204     237 .. 0.84
   2 !   11.1   0.0     0.001      0.34       3      36 ..     608     640 ..     606     651 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0081
                 EEESSTTSSHHHHHHCHCT- CS
         Roc   3 vlvGdsgvGKtsllkrfved 22 
                 vl+G+ gvGKt +++ + ++
  CCG91226.1 205 VLIGEPGVGKTAIVEGIAQR 224
                 79***********9877665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.001
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdf 36 
                 +++G +gvGKt l++++ e  f+++e ++i +d+
  CCG91226.1 608 IFLGPTGVGKTELARSLAEALFDSEE-NMIRLDM 640
                 79*****************9998775.4555555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.017       5.8       3      24 ..     206     227 ..     205     243 .. 0.85
   2 !   11.4   0.0   0.00093      0.31       2      25 ..     608     631 ..     607     649 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.017
  RNA_helicase   3 lyGpsgeGKStlakeLakallk 24 
                   l G++g+GK+ +++ +a+++ k
    CCG91226.1 206 LIGEPGVGKTAIVEGIAQRIVK 227
                   78**************999974 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00093
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkk 25 
                   ++ Gp+g+GK+ la++La+al ++
    CCG91226.1 608 IFLGPTGVGKTELARSLAEALFDS 631
                   689****************99854 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1     0.012         4       4      43 ..     185     224 ..     183     232 .. 0.77
   2 !    8.3   0.0    0.0056       1.9     101     143 ..     256     296 ..     233     363 .. 0.70
   3 !    8.1   0.0    0.0066       2.2      25      59 ..     608     643 ..     599     701 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.012
    ATPase_2   4 Rekelke.leeilerepneiyfiYGpegsGKtaLlkeiien 43 
                 R++e+++ ++ +++r++n++++i G  g+GKta++  i+++
  CCG91226.1 185 RDAEIRRtIQVLCRRTKNNPVLI-GEPGVGKTAIVEGIAQR 224
                 88999862666666666666665.**********9998876 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0056
    ATPase_2 101 lvfkaielllekikkkgkkiiiiiDelqklidlglngaellvk 143
                 + ++ ++++l++i+  + +ii++iDe+  ++  g  +ae  ++
  CCG91226.1 256 EFEERLKAVLKEISSAQGQIILFIDEIHTVV--GAGKAEGAID 296
                 567899***********************99..7666665554 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0066
    ATPase_2  25 iY.GpegsGKtaLlkeiienledkdkyviyyialre 59 
                 i+ Gp g+GKt L + ++e l d++++ i ++  + 
  CCG91226.1 608 IFlGPTGVGKTELARSLAEALFDSEENMIRLDMSEY 643
                 444******************887766654444333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.14        46      20      40 ..     205     225 ..     187     240 .. 0.81
   2 !   14.0   0.0   6.8e-05     0.023       6      58 ..     592     647 ..     587     657 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.14
  Zeta_toxin  20 llgGqpGAGKselaellkdel 40 
                 +l G pG GK+++ e +++++
  CCG91226.1 205 VLIGEPGVGKTAIVEGIAQRI 225
                 5669***********999887 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 6.8e-05
  Zeta_toxin   6 kdkk.ypsqerPk.lillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelh 58 
                 ++ +  ++ +rP+ + +  G +G GK+ela+ l+++l  +++n++rld  ++ e h
  CCG91226.1 592 RARSgLKDPKRPIgSFIFLGPTGVGKTELARSLAEALFdSEENMIRLDMSEYMEKH 647
                 555555666788733344689***************999**********9998888 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.3e-05     0.011      21     129 ..     606     702 ..     595     726 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.3e-05
  DNA_pol3_delta2  21 ayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqirelieelsrkpreskkkiiiiedaek 114
                      +++f G++g+gk ela  la+al+ +e+n        +  + +e++++    +i+       +  ++  +l+e + rkp+     +++++++ek
       CCG91226.1 606 SFIFLGPTGVGKTELARSLAEALFDSEENMI-R---LDMSEYMEKHTVA--RLIGAPPG--YVGFEEGGQLTEAVRRKPY----SVLLLDEIEK 687
                      799************************9976.2...3333444444444..44444444..689999999**99999996....69******** PP

  DNA_pol3_delta2 115 mtksAaNalLktlEE 129
                       +++  N +L++lE+
       CCG91226.1 688 AHPEVFNLFLQILED 702
                      *************97 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       7.3   2.5e+03      34      60 ..     137     167 ..     121     176 .. 0.82
   2 !    8.2   0.0     0.007       2.4      10      43 ..     192     225 ..     183     232 .. 0.76
   3 !    8.1   0.0    0.0074       2.5      22      43 ..     607     628 ..     578     637 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 7.3
                 HHHHHHHHHTT------T....TTTSEEEEE CS
        TsaE  34 tlvrglakalgveevkSP....TFtlveeYe 60 
                 tl r l +  g ++v+SP    T+  +e+Y 
  CCG91226.1 137 TLLRVLTEVRGSQRVTSPnpevTYEALEKYG 167
                 78888888889999***97777888888884 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.007
                 HHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  10 lgkklakalgdvilLeGdLGaGKTtlvrglakal 43 
                   + l + +++  +L G+ G+GKT++v g+a+ +
  CCG91226.1 192 TIQVLCRRTKNNPVLIGEPGVGKTAIVEGIAQRI 225
                 44555555566789*****************986 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0074
                 EEEEESTTSSHHHHHHHHHHHT CS
        TsaE  22 ilLeGdLGaGKTtlvrglakal 43 
                 +++ G+ G+GKT l+r+la+al
  CCG91226.1 607 FIFLGPTGVGKTELARSLAEAL 628
                 6788***************998 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.14        49       4      21 ..     206     223 ..     205     271 .. 0.94
   2 !   13.0   0.0   0.00026     0.087       3      38 ..     608     648 ..     607     678 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.14
      AAA_33   4 lvGlpGsGKstlaerllk 21 
                 l+G pG+GK+  +e++++
  CCG91226.1 206 LIGEPGVGKTAIVEGIAQ 223
                 89***********99987 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00026
      AAA_33   3 llvGlpGsGKstlaerllkklg.....avllssdtlrrrlf 38 
                 ++ G+ G+GK+ la++l+++l      +++l+  +++++++
  CCG91226.1 608 IFLGPTGVGKTELARSLAEALFdseenMIRLDMSEYMEKHT 648
                 899****************9999999999998888777665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.039        13       3      29 ..     205     232 ..     203     282 .. 0.74
   2 ?    3.1   0.5      0.29        99      27      72 ..     388     434 ..     373     443 .. 0.82
   3 !    8.5   0.0    0.0066       2.2       2      22 ..     607     627 ..     606     677 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.039
      AAA_28   3 vitGgestGKTtlleaLaargyp.vvpE 29 
                 v++G ++ GKT ++e +a+r ++  vpE
  CCG91226.1 205 VLIGEPGVGKTAIVEGIAQRIVKgDVPE 232
                 89****************9944434455 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.29
      AAA_28  27 vpEaareileeklakgedalpwv.edllafaervleeqleeeaaaaa 72 
                 +p+ a ++++e +ak + ++++  e+l  ++++vl+ ++e+ea +++
  CCG91226.1 388 LPDKAIDLVDEAAAKLKTEMESMpEELESLERKVLQLEIEREALRKE 434
                 5677778899999999999998899*****************99854 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0066
      AAA_28   2 ivitGgestGKTtlleaLaar 22 
                 ++++G+ + GKT l++ La+ 
  CCG91226.1 607 FIFLGPTGVGKTELARSLAEA 627
                 6899***************86 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.021       7.2       3      30 ..     202     229 ..     200     288 .. 0.79
   2 !    9.0   0.0     0.003         1       7      77 ..     609     688 ..     606     707 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.021
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfid 30 
                 ++ +++G++g+GKT ++  + ++++  d
  CCG91226.1 202 NNPVLIGEPGVGKTAIVEGIAQRIVKGD 229
                 56699*********99988766655555 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.003
      AAA_24   7 iyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel..................aaeladyktlviDtidel 77 
                   Gp g+GKT la++l  ++l +d e+ + +ld  ++ + ++++        l                  a   ++y++l +D i+++
  CCG91226.1 609 FLGPTGVGKTELARSL-AEAL-FDSEENMIRLDMSEYMEKHTVAR-------LigappgyvgfeeggqlteAVRRKPYSVLLLDEIEKA 688
                 57**************.6655.57777688888888775554444.......2333344466677777777777888888888888887 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.14        47       4      23 ..     206     225 ..     204     233 .. 0.87
   2 !    9.4   0.0    0.0027       0.9       8     109 ..     613     723 ..     607     730 .. 0.56

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.14
       AAA_3   4 legvPGlaktllvkalakal 23 
                 l g PG++kt +v+ +a+ +
  CCG91226.1 206 LIGEPGVGKTAIVEGIAQRI 225
                 6789************9976 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0027
       AAA_3   8 PGlaktllvkalakal...dlefkriqftpdl...lPsdilGtevfeekekefefkkGpvfa........nllladeinrappktqsalleameerqvt 92 
                  G++kt l+++la+al   + ++ r+ +   +     + ++G+         + f++G  ++        ++ll dei++a p +   +l+++e+ ++t
  CCG91226.1 613 TGVGKTELARSLAEALfdsEENMIRLDMSEYMekhTVARLIGA-----PPGYVGFEEGGQLTeavrrkpySVLLLDEIEKAHPEVFNLFLQILEDGRLT 706
                 5788888888888765422233344444333211122333333.....33333333332222111111116999***********************99 PP

       AAA_3  93 ve.gethklpepflvlat 109
                  + g+t +++++ +++ t
  CCG91226.1 707 DGhGRTVDFKNTIIIM-T 723
                 7525677776666555.4 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0      0.02       6.8      99     122 ..     201     224 ..     165     242 .. 0.78
   2 !    8.0   0.0    0.0071       2.4     102     122 ..     607     627 ..     591     653 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.02
                  TSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpe 122
                  ++  vl+G+ GvGK+++++ ++++
   CCG91226.1 201 KNNPVLIGEPGVGKTAIVEGIAQR 224
                  35679************9988775 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0071
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                   +++G++GvGK+ L  +l++ 
   CCG91226.1 607 FIFLGPTGVGKTELARSLAEA 627
                  68************9999875 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   0.00054      0.18      10      69 ..     201     279 ..     193     400 .. 0.66
   2 ?    1.7   0.0      0.89     3e+02      15      38 ..     609     632 ..     601     706 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00054
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkp.........eeillvaftgrAakelrerlaalgae...........a 69 
                 +++ ++++ pG GKT ++++i + +v+                ++ ++    +   e +erl+a+++e           +
  CCG91226.1 201 KNNPVLIGEPGVGKTAIVEGIAQRIVKGDVP-EslknrrivaLDMGALIAGAKYRGEFEERLKAVLKEissaqgqiilfI 279
                 5566899**************9999887632.234443333322222333344455666666666666555555555553 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.89
      AAA_19  15 vtaGpGtGKTrvlkhivallvelg 38 
                  +++ G GKT++ +   + l + +
  CCG91226.1 609 FLGPTGVGKTELARSLAEALFDSE 632
                 566777777777666666655544 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.012         4      10      41 ..     193     224 ..     186     246 .. 0.80
   2 ?   -0.7   0.0       2.9     1e+03     122     157 ..     286     324 ..     258     338 .. 0.65
   3 ?    4.9   0.0     0.055        19      22      52 ..     608     638 ..     605     706 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.012
      AAA_30  10 vealltsgdrvavltGpAGtGKttalkalrea 41 
                 ++ l+  ++   vl G +G GKt +++++++ 
  CCG91226.1 193 IQVLCRRTKNNPVLIGEPGVGKTAIVEGIAQR 224
                 5556666666789**************99765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.9
      AAA_30 122 vGDerQlasVeaGgvlrdlvea...agigtaeLtevvRq 157
                 vG  +  ++++aG++l+ +++    + ig+++L+e +++
  CCG91226.1 286 VGAGKAEGAIDAGNMLKPMLARgelHCIGATTLDEYRKY 324
                 444455578888888888876544445678888877766 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.055
      AAA_30  22 vltGpAGtGKttalkalreaweaaggrvigl 52 
                 +  Gp G GKt + ++l+ea+ ++++++i l
  CCG91226.1 608 IFLGPTGVGKTELARSLAEALFDSEENMIRL 638
                 5679*************99998876666554 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0     0.006         2       4      28 ..     206     230 ..     203     233 .. 0.86
   2 ?    5.0   0.0     0.059        20       5      25 ..     610     630 ..     606     638 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.006
                 EE--TTSSHHHHHHHHHHHH...GG CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellkssgv 28 
                 + G+pGvGKt +v+ +++ + + +v
  CCG91226.1 206 LIGEPGVGKTAIVEGIAQRIVKGDV 230
                 67***************99977655 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.059
                 E--TTSSHHHHHHHHHHHH.. CS
    NTPase_1   5 TGppGvGKtTlvkkvlellks 25 
                  Gp GvGKt l + ++e+l +
  CCG91226.1 610 LGPTGVGKTELARSLAEALFD 630
                 59**************99965 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       1.3   4.3e+02      12      49 ..     189     226 ..     184     233 .. 0.77
   2 ?   -0.2   0.0       2.5   8.4e+02     129     147 ..     270     288 ..     233     304 .. 0.76
   3 !   11.0   0.0   0.00093      0.32       8      53 ..     579     633 ..     574     641 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.3
                 HHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH- CS
      ResIII  12 ienlleklkskrdkrglikmaTGtGKTlvaaklierll 49 
                 i+++++ l  + +++ ++  + G+GKT +   +++r+ 
  CCG91226.1 189 IRRTIQVLCRRTKNNPVLIGEPGVGKTAIVEGIAQRIV 226
                 5666666665666677899999******9988887765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 2.5
                 HTTT-SEEEEETGGGTTS. CS
      ResIII 129 lrdrfdviiiDEaHrlgak 147
                 + + + +++iDE H + ++
  CCG91226.1 270 SAQGQIILFIDEIHTVVGA 288
                 445556999*****98775 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00093
                 HHHHHHHHT...........TTS....EEEEEESTTSTHHHHHHHHHHHH-S... CS
      ResIII   8 Qeeaienlleklks.....krdk....rglikmaTGtGKTlvaaklierllkkgk 53 
                 Q ea++++++++       k+ k     +++  +TG+GKT +a +l+e+l+ +++
  CCG91226.1 579 QDEAVNAVVDAILRarsglKDPKrpigSFIFLGPTGVGKTELARSLAEALFDSEE 633
                 77788888766555555663333446788999*******************9854 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9  21.8   1.4e-05    0.0046     142     255 ..     415     527 ..     398     544 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-05
        Spc7 142 egleenlegleedkelLekqeeel.dellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieel 239
                 e+le+++ +le ++e L k+++e+ ++ l+ele+e ael++e +++++   e e+    eL+ lreel+++++eie+ ++e  +l++  e    ki +l
  CCG91226.1 415 ESLERKVLQLEIEREALRKEKDEAsQKRLEELEKELAELRSERDRMRANW-EAEKGSIMELQHLREELQKAEQEIEKAQRE-YDLNKVAELRYGKIPTL 511
                 67899999999999999988888768889999999999999999999944.5688899******************55555.578888888999***** PP

        Spc7 240 keqkseleeeiaeaer 255
                 ++q++ele++i+e++ 
  CCG91226.1 512 TKQIQELESKISEEDG 527
                 ************8764 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   8.9   3.4e-05     0.011     116     236 ..     399     532 ..     371     544 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.4e-05
     DUF4407 116 qqeeakelkeqlaaa......ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk...gtgttgvaGkgpaakekkaqldaaqaelaelkak 205
                 ++++ k+  e+          l+ ++ +le +++al++e d+a++++ ++ ++  +el  ++    +  ++ +G   + ++ +++l++a++e+++++++
  CCG91226.1 399 AAAKLKTEMES---MpeelesLERKVLQLEIEREALRKEKDEASQKRLEELEKELAELRSERdrmRANWEAEKGSIMELQHLREELQKAEQEIEKAQRE 494
                 33333333333...344477789999999999999999999887655555444444666555677677788999************************* PP

     DUF4407 206 ld.......atarlaalraelaeleaerakeraasqaa 236
                  d       +  ++++l ++++ele+++++e  ++ ++
  CCG91226.1 495 YDlnkvaelRYGKIPTLTKQIQELESKISEEDGSKHRM 532
                 99*****9988899999999999999888877666555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.13        44      15      35 ..     205     225 ..     198     278 .. 0.86
   2 ?    0.4   1.1       2.6   8.8e+02      52      96 ..     434     499 ..     395     538 .. 0.59
   3 !    8.8   0.0    0.0065       2.2      16      49 ..     609     643 ..     605     661 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.13
                 EEEESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagll 35 
                 +++Ge G GK+ +++ +a+  
  CCG91226.1 205 VLIGEPGVGKTAIVEGIAQRI 225
                 79************9998765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 2.6
                 B-HHHCCHCEEEE-SS.--S-TTSB.HHHH...................HHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxx.xxxxxxxx.xxxx...................xxxxxxxxxxxxxxxxx RF
    ABC_tran  52 qeleslrkeigvlpqe.pqlfpelt.vren...................esdeeiekalsklglke 96 
                 ++ e ++k+++ l++e ++l +e   +r n                   ++++eieka ++++l++
  CCG91226.1 434 EKDEASQKRLEELEKElAELRSERDrMRANweaekgsimelqhlreelqKAEQEIEKAQREYDLNK 499
                 334444444444444433333332223333555556666666666555555555666666665555 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0065
                 EEESTTSSHHHHHHHHTTSS.--SEEEEEETTCEG CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagll.kpteGeilldgkdl 49 
                 ++G++G GK+ L++ la+ l + +e  i+ld+ + 
  CCG91226.1 609 FLGPTGVGKTELARSLAEALfDSEENMIRLDMSEY 643
                 79**************9765155777788876554 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3  27.1       7.8   2.6e+03      24     200 .]     206     489 ..     192     524 .. 0.54
   2 ?    9.4   0.0    0.0042       1.4      20      63 ..     605     649 ..     600     809 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 7.8
      AAA_23  24 ItGpNGaGKTTildAikl.aLygetprlsrks.......grgfeksdveiesegkvkayveltfenkdgry............................ 86 
                 ++G+ G GKT+i++ i   +  g++p+  +++       g  +  ++++ e+e+  ka+++   +     +                            
  CCG91226.1 206 LIGEPGVGKTAIVEGIAQrIVKGDVPESLKNRrivaldmGALIAGAKYRGEFEERLKAVLKEISSA----Qgqiilfideihtvvgagkaegaidagnm 300
                 567777777777777776344566665555554555555444444444444443333332222222....22223455555555566666666677777 PP

      AAA_23  87 ..............................................................................trsiererelskkkgkttkka 107
                                                                                                 +   +r+l +k        
  CCG91226.1 301 lkpmlargelhcigattldeyrkyiekdaalerrfqpvlveeptvedtisilrglknryevhhgvriqdaalvaaavlSHRYISDRFLPDKAI------ 393
                 777777777777775555555444555444444554444443333333333333333223333222222222222222111112222222222...... PP

      AAA_23 108 klelleideleqfisellgskkiilnlilflgqer....................................feefelkdkkerleelekeleeledekk 170
                                                   +                                      ++++++ ++rleelekel el  e++
  CCG91226.1 394 ----------------------------------DlvdeaaaklktemesmpeeleslerkvlqleiereaLRKEKDEASQKRLEELEKELAELRSERD 458
                 ..................................12222222222222222222222222222222222224445667777799999999999999888 PP

      AAA_23 171 llekl.eqekekekeleeleeeleeilkele 200
                  ++++ e ek    el+ l+eel+++++e+e
  CCG91226.1 459 RMRANwEAEKGSIMELQHLREELQKAEQEIE 489
                 8888887777777789999999998888886 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0042
      AAA_23  20 gltlItGpNGaGKTTildAiklaLygetprlsrks.grgfeksdv 63 
                 g +++ Gp+G GKT + + +  aL+   +++ r + ++ +ek+ v
  CCG91226.1 605 GSFIFLGPTGVGKTELARSLAEALFDSEENMIRLDmSEYMEKHTV 649
                 6799*********************96544433334445555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0043       1.5      37     107 ..     205     278 ..     185     301 .. 0.80
   2 ?    4.2   0.0     0.082        28      36      56 ..     607     627 ..     579     635 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0043
      AAA_25  37 llaGapgtGKttlaldlalavatGkpwlg.....pvapeqgkVlyvsaEdsedelrrRlravgealrddarllvld 107
                 +l+G pg+GKt+++  +a  +++G+ +++     +++   +  l+  a  +  e+++Rl+av+++++  ++  +l 
  CCG91226.1 205 VLIGEPGVGKTAIVEGIAQRIVKGD-VPEslknrRIVALDMGALIAGAKYRG-EFEERLKAVLKEISSAQGQIILF 278
                 699*******************998.67767765444566777777777776.99999999999997766666555 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.082
      AAA_25  36 allaGapgtGKttlaldlala 56 
                  ++ G++g+GKt la +la a
  CCG91226.1 607 FIFLGPTGVGKTELARSLAEA 627
                 4677***********999855 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       9.6   3.2e+03      59      83 ..     207     231 ..     204     271 .. 0.70
   2 ?   13.2   0.0   0.00021     0.071      15      80 ..     564     631 ..     559     645 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 9.6
                 EE-TTSSHHHHHHHHHHHHSTTGGG CS
      Torsin  59 hGwtGtGknfvaeiiaenlyrdGlr 83 
                  G +G Gk  + e ia+ + +  + 
  CCG91226.1 207 IGEPGVGKTAIVEGIAQRIVKGDVP 231
                 5899999999999999998776554 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00021
                 -HHHHHHHHHHH--S-HHHHHHHHHHH.HHHHT-SS-SS-E.EEEEEE-TTSSHHHHHHHHHHHHSTT CS
      Torsin  15 nleeLekdlekklfGqhlvkklvvksv.kaylenekpkkpL.vlsfhGwtGtGknfvaeiiaenlyrd 80 
                 +l +L++ l+k+++Gq  + + vv ++ +a    ++pk+p+  + f G tG Gk  +a+ +ae+l+ +
  CCG91226.1 564 KLLKLDQILHKRVVGQDEAVNAVVDAIlRARSGLKDPKRPIgSFIFLGPTGVGKTELARSLAEALFDS 631
                 56789999****************99736777778999998457899******************975 PP

>> Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.7    0.0002     0.068      96     176 ..     439     524 ..     428     525 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0002
  Bacillus_HBL  96 dkkdkaellellekLqee...iqqnqkevkqlikeLkklklklakdsknFktdv..deltsilagdsgvisqlqneiedlqgkikk 176
                    +k  +el + l +L++e   +  n ++ k +i eL++l+++l+k +++ +++     l+++ +   g+i++l ++i++l++ki++
    CCG91226.1 439 SQKRLEELEKELAELRSErdrMRANWEAEKGSIMELQHLREELQKAEQEIEKAQreYDLNKVAELRYGKIPTLTKQIQELESKISE 524
                   5666788888888898765557788888999*******************9998445689************************96 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  10.0    0.0005      0.17     119     180 ..     438     499 ..     398     504 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0005
         OEP 119 lakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlar 180
                 +++++le +e+ l+++++  ++++a ++a + s+++++  + +l++a++e+++a++++ l++
  CCG91226.1 438 ASQKRLEELEKELAELRSERDRMRANWEAEKGSIMELQHLREELQKAEQEIEKAQREYDLNK 499
                 6899******************************************************9876 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.7   0.00062      0.21      32     131 ..     407     503 ..     344     579 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00062
  V_ATPase_I  32 cdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleeeeeeeeeeesee 130
                 ++ m ++l+ le+++ +    +i++e   ++++++++k+l+ele+el +l +e  ++++n e+ k +  el++l++ l+ka++ +e++++e + ++  e
  CCG91226.1 407 MESMPEELESLERKVLQ---LEIEREALRKEKDEASQKRLEELEKELAELRSERDRMRANWEAEKGSIMELQHLREELQKAEQEIEKAQREYDLNKVAE 502
                 23333334444444333...3444444478889999999999999999999999999999999999999999999999999999987744333322222 PP

  V_ATPase_I 131 e 131
                  
  CCG91226.1 503 L 503
                 2 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2       2.6   8.8e+02      37      72 ..      86     121 ..      58     133 .. 0.66
   2 ?   13.4  22.5   0.00015     0.052      32     129 ..     397     498 ..     390     574 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.6
         ERM  37 lLaekarraeeeaelLeqkaaeaeeeiqrlkesaek 72 
                 +  e + +a+eea++L+ +   +e+   ++ e+++k
  CCG91226.1  86 RFSELLVKAREEAKRLKDEYVSVEHLLLAMLEESSK 121
                 344445556666777766666666666666666555 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00015
         ERM  32 eetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaek.eeeekeklerklreaeleaarleeeser...keeeaerLkeeleeareaeeeakekl 126
                  e a +L+ +++ + ee e Le+k  ++e e ++l++++ + +++  e+le++l+e  +e  r++ + e+      e ++L+eel++a+++ e+a+++ 
  CCG91226.1 397 DEAAAKLKTEMESMPEELESLERKVLQLEIEREALRKEKDEaSQKRLEELEKELAELRSERDRMRANWEAekgSIMELQHLREELQKAEQEIEKAQREY 495
                 57899******************************9988653788889*****************6655522266899999999999999999999764 PP

         ERM 127 lea 129
                    
  CCG91226.1 496 DLN 498
                 322 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.4    0.0037       1.3     208     333 ..     399     504 ..     349     519 .. 0.78
   2 ?   -2.4   0.0         5   1.7e+03     170     209 ..     604     642 ..     604     649 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0037
       LMBR1 208 eaaklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklks.....nenkteeslaklekqlikalqkrertekqwkrlleka 301
                  aakl+te+e + +ele+l ++v +l+ +                           +     ++++++++l +lek+l + +++r r +++w+     +
  CCG91226.1 399 AAAKLKTEMESMPEELESLERKVLQLEIER--------------------------EalrkeKDEASQKRLEELEKELAELRSERDRMRANWEAEKGSI 471
                 466777777777777776666666663333..........................0222336778999****************************** PP

       LMBR1 302 lelediiknksskekefksses.srrgefakqg 333
                 +el+ + ++ +++e+e+++ ++  +++++a+ +
  CCG91226.1 472 MELQHLREELQKAEQEIEKAQReYDLNKVAELR 504
                 ****************99998877777776654 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5
       LMBR1 170 wGlvllilllGyGlvelPrslwreiksdldeelkklyfea 209
                 +G ++++  +G+G  el rsl+    +d++e + +l +++
  CCG91226.1 604 IGSFIFLGPTGVGKTELARSLAE-ALFDSEENMIRLDMSE 642
                 699******************99.7778877777776665 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.7   1.6e+03     278     293 ..      89     104 ..      82     110 .. 0.73
   2 ?    7.8  25.4    0.0023      0.78     200     559 ..     398     521 ..     388     539 .. 0.49

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.7
        HOOK 278 eeltslaeEaqaLkDE 293
                 e l ++ eEa+ LkDE
  CCG91226.1  89 ELLVKAREEAKRLKDE 104
                 3456777899999999 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0023
        HOOK 200 eEknaLlaenkklqerlsele....ngeesgtiqltskkylelqkqleqlqeelfrlEtarddyrlkceelekevlelqqrneeltslaeEaqaLkDEv 294
                 e  ++L++e++++ e+l++le    + e + ++ l ++k    qk+le+l+ el  l + rd +r   e  +  ++elq+  eel+++ +E+++ + E 
  CCG91226.1 398 EAAAKLKTEMESMPEELESLErkvlQLEIEREA-LRKEKDEASQKRLEELEKELAELRSERDRMRANWEAEKGSIMELQHLREELQKAEQEIEKAQREY 495
                 333444444444444444444322222222222.44555555556666666666666666666666555555556666666666666666665555555 PP

        HOOK 295 DvLresadkvkkleatvetykkkledlndLrrqvklleernaeYlqktveleeelkkanalrsqlelykkqvqelhkklseeskkadklefelkkleek 393
                 D                                                                                                  
  CCG91226.1 496 DL------------------------------------------------------------------------------------------------- 497
                 54................................................................................................. PP

        HOOK 394 lealqkekerllaerdaLketneELkcaqlqqkelsqadalaskssssgenlaaellpaevreklirLqhENKmLklkqegseeekltelqelledanr 492
                                                                                                                    
  CCG91226.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

        HOOK 493 rkneLetenrlanqrileLeaqveelqkalqeqgskaedssllkkkleehleklkevqeelqkkkeq 559
                                                            +k  e +  k+  + +++q+ +  
  CCG91226.1 498 -------------------------------------------NKVAELRYGKIPTLTKQIQELESK 521
                 ...........................................444444444444444444444333 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  16.3     0.012       4.2      26     149 ..     402     524 ..     397     547 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.012
       Atg14  26 elrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeiee...kkkklaklsdklk..kRrsdle 119
                 +l++++ ++ +e esl++k+ +++ ++e    +++k + ++++leel ++ a+lr++  ++++  +  k +i e    +++l+k  +++   +R  d  
  CCG91226.1 402 KLKTEMESMPEELESLERKVLQLEIERE--ALRKEKDEASQKRLEELEKELAELRSERDRMRANWEAEKGSIMElqhLREELQKAEQEIEkaQREYD-- 496
                 578888999999**********999999..7788888889999999999********9999999999999886511156677777777754444444.. PP

       Atg14 120 slqneleerrkkqiaklqdaikrieqklss 149
                    n+++e r  +i +l+++i++ e k+s+
  CCG91226.1 497 --LNKVAELRYGKIPTLTKQIQELESKISE 524
                 ..7889999999999999999977777554 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       9.7   3.3e+03     119     169 ..      89     139 ..      58     181 .. 0.58
   2 ?    3.7   0.0      0.17        56      29      60 ..     207     244 ..     205     246 .. 0.91
   3 ?    7.2   0.0     0.015         5      29      60 ..     610     640 ..     606     653 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 9.7
       DUF87 119 svleealdqakakeekeklssdepveklleelk.kekeelrklknqaiarll 169
                 ++l +a ++ak + ++e +s+++++  +lee   + ++ l k+    +++ll
  CCG91226.1  89 ELLVKAREEAK-RLKDEYVSVEHLLLAMLEESSkTVVARLFKSHGLDRETLL 139
                 45555556665.3666666666666666665553222244444444444444 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.17
       DUF87  29 lgsTGsGKSntvavLleelle......kkgatililDp 60 
                 +g+ G+GK+  v  + +++++       k+ +i+ lD+
  CCG91226.1 207 IGEPGVGKTAIVEGIAQRIVKgdvpesLKNRRIVALDM 244
                 6888****************999999888889999997 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.015
       DUF87  29 lgsTGsGKSntvavLleellekkgatililDp 60 
                 lg TG+GK+ ++++L e l  +   +++ lD+
  CCG91226.1 610 LGPTGVGKTELARSLAEALF-DSEENMIRLDM 640
                 899***************99.66656666665 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1       0.4   1.3e+02      55      83 ..     395     423 ..     390     426 .. 0.50
   2 ?    5.0   3.2     0.085        29      17      72 ..     440     493 ..     423     498 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  55 ewkqaaqklvdaLeeisealkqaanafed 83 
                  +++aa+kl++++e++ e+l++  +++ +
  CCG91226.1 395 LVDEAAAKLKTEMESMPEELESLERKVLQ 423
                 44555555555555555555554444433 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.085
                 HHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  17 qkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeise 72 
                 qk  eele el++l++e d ++++W+  a +   +e++ +++++qk  ++ e+ ++
  CCG91226.1 440 QKRLEELEKELAELRSERDRMRANWE--AEKGSIMELQHLREELQKAEQEIEKAQR 493
                 45669********************7..7777788888888888888888777765 PP

>> rRNA_proc-arch  rRNA-processing arch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.0    0.0018      0.61      13      62 ..     439     491 ..     437     496 .. 0.89
   2 ?   -0.6   0.1       2.9   9.9e+02      16      33 ..     507     524 ..     504     576 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0018
                     HHHHHHHHHHHHHHHHHHHHTC--TT...HHHHHHHHHHHHHHHHHHHHHHHH CS
  rRNA_proc-arch  13 nqkslpelekklkeleeelksitied...eedieeyyklrqqleelreeirki 62 
                     +qk l elek+l+el +e++ + +     + +i e  +lr++l+++++ei k 
      CCG91226.1 439 SQKRLEELEKELAELRSERDRMRANWeaeKGSIMELQHLREELQKAEQEIEKA 491
                     799********************995556888****************99876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.9
                     HHHHHHHHHHHHHHHHHT CS
  rRNA_proc-arch  16 slpelekklkeleeelks 33 
                     ++p l k+++ele+++++
      CCG91226.1 507 KIPTLTKQIQELESKISE 524
                     678888888888888877 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  15.8   0.00021     0.072       2      58 ..     404     461 ..     403     469 .. 0.89
   2 ?    2.1   3.9      0.63   2.1e+02       4      26 ..     473     495 ..     471     520 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00021
  Cep57_CLD_2   2 eaevktLqnrLdsltrklqvheeelkrLnkERdsalr.qLgvAyeelneLkaevealr 58 
                  ++e ++  ++L+sl+rk+   e+e+++L+kE d+a + +L +   el eL++e ++ r
   CCG91226.1 404 KTEMESMPEELESLERKVLQLEIEREALRKEKDEASQkRLEELEKELAELRSERDRMR 461
                  667777889*************************99737****************987 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.63
  Cep57_CLD_2   4 evktLqnrLdsltrklqvheeel 26 
                  e + L+++L  +++++++++ e+
   CCG91226.1 473 ELQHLREELQKAEQEIEKAQREY 495
                  56889999999999999999654 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  27.7    0.0011      0.36      19     120 ..     400     495 ..     393     520 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0011
  CENP-F_leu_zip  19 adsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleek 113
                     a++Lk   e++  ele +e++    +l+ E +++++ + k+e  +  ++l+ele +L++lrse++ +  + + ++  + eL+ l+++l++  +e 
      CCG91226.1 400 AAKLKTEMESMPEELESLERK----VLQLEIEREALRKEKDEASQ--KRLEELEKELAELRSERDRMRANWEAEKGSIMELQHLREELQKAEQEI 488
                     455666666666666555555....55666655555555555554..789*********************************999999887777 PP

  CENP-F_leu_zip 114 Eqekvqm 120
                     E+ +++ 
      CCG91226.1 489 EKAQREY 495
                     7775443 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  16.8     0.011       3.7       6      65 ..     403     465 ..     399     466 .. 0.63
   2 ?    8.9   6.9    0.0053       1.8       9      59 ..     473     524 ..     471     529 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.011
  ABC_tran_CTD   6 eqreleeleaeIeaLEeeiaelea...eladpelysdpeklaelsaeleeleaeLeelyerWe 65 
                    + e+e +++e+e+LE +  +le    +l ++   + +++l el +el+el++e +++ ++We
    CCG91226.1 403 LKTEMESMPEELESLERKVLQLEIereALRKEKDEASQKRLEELEKELAELRSERDRMRANWE 465
                   5666666666666666665555431112222221123478*****************999999 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0053
  ABC_tran_CTD   9 eleeleaeIeaLEeeiaeleaeladpely.sdpeklaelsaeleeleaeLee 59 
                   el++l +e+++ E+ei++ + e   + +   ++ k+  l+++++ele+++ e
    CCG91226.1 473 ELQHLREELQKAEQEIEKAQREYDLNKVAeLRYGKIPTLTKQIQELESKISE 524
                   99********************99999998888**************99865 PP

>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  16.1     0.036        12       3      95 ..     402     489 ..     400     541 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.036
     DUF2408   3 elspelepiyekLvsirrsLlslaakskaeeakeseevkeelkelkeeLkkieskrde.egkFkseegkevvekgqavlngLlddcfdlvedlk 95 
                 +l++e+e++ e+L s+ r++l+l  + +a +++++e+ +++l+el++eL ++ s+rd  + ++       +++ + + l+ L ++  +  ++++
  CCG91226.1 402 KLKTEMESMPEELESLERKVLQLEIEREALRKEKDEASQKRLEELEKELAELRSERDRmRANWE------AEKGSIMELQHLREELQKAEQEIE 489
                 7999*************************99999999********************9423332......223333344444444444444444 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       5.5   1.8e+03     206     228 ..      79     101 ..       4     159 .. 0.43
   2 ?    8.0   6.3    0.0055       1.9     140     256 ..     398     522 ..     373     571 .. 0.51

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 5.5
  Exonuc_VII_L 206 qlkkkrerleelkerlkekleek 228
                   + +  ++r++el  + +e+ ++ 
    CCG91226.1  79 TGSYISQRFSELLVKAREEAKRL 101
                   11111111111111111111111 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0055
  Exonuc_VII_L 140 pdkaeleeqleelerrlekaikrlleekkqrleklasrlk.speellerkrqrldeleerleralkkqlkkkrerleelkerlkekleekkerlkkl 235
                   +  a+l+ ++e++ ++le+  ++ l+ +  + e+l+++    ++++le+ +++l el+++ +r ++ ++++++  + el+ +l+e+l++++++++k 
    CCG91226.1 398 EAAAKLKTEMESMPEELESLERKVLQLEI-EREALRKEKDeASQKRLEELEKELAELRSERDR-MRANWEAEKGSIMELQ-HLREELQKAEQEIEKA 491
                   33333333333333333333333332111.111222222112233333333333333333333.3333444443333333.3333444444444333 PP

  Exonuc_VII_L 236 kerle..........lleekkerleeleekl 256
                   +++ +          ++ + +++++ele+k+
    CCG91226.1 492 QREYDlnkvaelrygKIPTLTKQIQELESKI 522
                   3333333333333343444444444444444 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2       4.9   1.7e+03      57      81 ..      85     109 ..      56     124 .. 0.76
   2 ?    7.8  23.1    0.0056       1.9      29     123 ..     401     496 ..     398     504 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.9
         GAS  57 krlkepLkkaeeeveeLrkqlknye 81 
                 +r +e L ka+ee ++L+ +    e
  CCG91226.1  85 QRFSELLVKAREEAKRLKDEYVSVE 109
                 5677888888888888887776655 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0056
         GAS  29 kslKeeieelkkkeernekelseisqenkrlkepL.kkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerd 123
                  +lK e+e + ++ e+ e+++ +++ e + l+++  ++ ++ +eeL+k+l++ ++++ ++++  +  k + +el++l++e +  eq++ek+++e+d
  CCG91226.1 401 AKLKTEMESMPEELESLERKVLQLEIEREALRKEKdEASQKRLEELEKELAELRSERDRMRANWEAEKGSIMELQHLREELQKAEQEIEKAQREYD 496
                 589**************************998666155577899*************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1651  (0.0920854); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                        81  (0.00451782); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              53  [number of targets reported over threshold]
# CPU time: 1.28u 0.31s 00:00:01.59 Elapsed: 00:00:00.52
# Mc/sec: 5026.41
//
Query:       CCG91227.1  [L=125]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.003   17.3   0.9      0.003   17.3   0.9    3.0  3  TRAF_BIRC3_bd   TNF receptor-associated factor BIRC3 binding 
  ------ inclusion threshold ------
      0.044   14.0   1.4      0.056   13.7   0.5    1.6  1  FliJ            Flagellar FliJ protein
      0.073   13.1   7.3       0.11   12.6   7.3    1.3  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
       0.23   11.0   2.9       0.25   10.9   2.9    1.0  1  Exonuc_VII_L    Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> TRAF_BIRC3_bd  TNF receptor-associated factor BIRC3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.29   1.3e+03      50      57 ..      12      19 ..      10      28 .. 0.78
   2 !   17.3   0.9   6.7e-07     0.003      21      61 ..      37      77 ..      16      79 .. 0.93
   3 ?    0.9   0.2     0.091   4.1e+02      39      51 ..      83      95 ..      80     125 .] 0.75

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.29
  TRAF_BIRC3_bd 50 aLekKvrq 57
                   aLe+K+r+
     CCG91227.1 12 ALEEKIRA 19
                   78888875 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 6.7e-07
  TRAF_BIRC3_bd 21 sVLnrEverssttieaverqrrldqekieaLekKvrqLert 61
                   s L+rE+e  s++i  +++     ++ki+ L++ ++ Ler+
     CCG91227.1 37 SRLHREIENLSLEISLINKHAPDTRKKIKLLSQLLKTLERI 77
                   669************************************97 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.091
  TRAF_BIRC3_bd 39 rqrrldqekieaL 51
                   ++rr+d +ki++L
     CCG91227.1 83 KGRRKDLKKIDSL 95
                   6777788888776 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.5   1.2e-05     0.056      41     111 ..      23      93 ..       8      96 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
        FliJ  41 glsaaelrnyqafisaldeaiaqqkqelaqaekqvekareewqearqerkklekLkerekkeeqkeenrrE 111
                  ls+   + + a++s+l ++i+ +  e++  +k+    r++ +   q +k+le+++ r +k ++k +++ +
  CCG91227.1  23 ELSVHLDQLVAAYLSRLHREIENLSLEISLINKHAPDTRKKIKLLSQLLKTLERIQIRPEKGRRKDLKKID 93 
                 456666677899******************************************************99987 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   7.3   2.4e-05      0.11      48     138 ..      15     106 ..       8     124 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.4e-05
  CENP-F_leu_zip  48 Etskaevetlkeeieel.aeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekvqmkeeskaaveeLqtqlkel 138
                     E+ +a +++l  ++++l a+ l++l+ ++++l+ e   ++k+  + +++++ L +l  +le++  + E+ +++  ++ ++ +  L+ ql++ 
      CCG91227.1  15 EKIRARISELSVHLDQLvAAYLSRLHREIENLSLEISLINKHAPDTRKKIKLLSQLLKTLERIQIRPEKGRRKDLKKIDSLIGYLSEQLEKE 106
                     888999********9984678*****************************************9999****9999999999888888777654 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.9   5.6e-05      0.25     142     240 ..      14     111 ..       6     125 .] 0.63

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.6e-05
  Exonuc_VII_L 142 kaeleeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlk.......ekleekker 231
                   +++++++++el+ +l++ ++ +l++ ++++e+l+ +++  ++   + r++++ l++ l++  + q++ ++ r + lk ++        e+le+++++
    CCG91227.1  14 EEKIRARISELSVHLDQLVAAYLSRLHREIENLSLEISLINKHAPDTRKKIKLLSQLLKTLERIQIRPEKGRRKDLK-KIDsligylsEQLEKESKE 109
                   57899999***********************9999997666666666777666666666655555555555555555.3321222333444444444 PP

  Exonuc_VII_L 232 lkklkerle 240
                   l       +
    CCG91227.1 110 L-------K 111
                   4.......3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1272  (0.0709465); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 857.37
//
Query:       CCG91228.1  [L=337]
Description: Exopolyphosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-49  167.8   0.0      4e-49  167.6   0.0    1.0  1  Ppx-GppA  Ppx/GppA phosphatase family
  ------ inclusion threshold ------
      0.086   13.3   0.0        5.3    7.5   0.0    2.9  2  FtsA      Cell division protein FtsA
        0.1   12.9   0.5       0.41   10.9   0.4    2.0  2  Grg1      Glucose-repressible protein Grg1


Domain annotation for each model (and alignments):
>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   0.0   6.8e-53     4e-49       5     281 ..      46     330 ..      42     334 .. 0.94

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 6.8e-53
                 ECTTE.EEEEEEEEEE--CCCCCHCCSSC-HHHHHHHHHHHHHHHHHCCCTTGCCEEEEEEHHHHHSTTHHHHHHHHCCCCSS-EEEE-HHHHHHHHHH CS
    Ppx-GppA   5 kaagl.lqivarekrkvrLaeglnesgrlqeeaiertisaLkefaellqkfkvenvrvVATsalRdavNadeFlarvkkevglkveiisgeeEarliyl 102
                 k++ + +  +     ++rLa++l ++g l+++ai+rt+  L+ +  +++++kv + ++ ATsa+Rd +N++ Fl+ +++++g k+ ++sge+Ea++iy+
  CCG91228.1  46 KKDEKtIDFLLHLSYTTRLADKLFFTGELSQDAIHRTLDILRHLRMRADNLKVGSRIAAATSAVRDSKNRKKFLKEAEEVLGHKILLLSGEDEAKTIYR 144
                 4444459999999****************************************999999**************************************** PP

                 HHHH..HT.---SSEEEEEEETTEEEEEEEETTEEEEEEEES--CCHHHHHHSGCCC--HHHHHHHHHHHHHHCTTTHHHHCCCEHHCCCCCCCHCCHH CS
    Ppx-GppA 103 gvvs..sl.lekgrglviDiGGGStElvlgeekevsklvSlplGavrlterfltddpltkeeveaarkavekeleevkdevkkegewtrlvgtsgtisa 198
                 gv s  sl  +++   v+D+GGGS E + g++k+++  +SlplGa+r++ rf+t+ p++++ v+ +   +ek+l+e  +++k     + ++gt gt+ a
  CCG91228.1 145 GVSSdpSLqGKDNLLTVLDVGGGSSEWICGKDKKPERFLSLPLGAIRIKDRFITEYPVGTKTVAHMLLCLEKQLKEQLKDFKNYS--QHIIGTGGTVAA 241
                 ***93334567777889*****************************************************************999..99********** PP

                 CHHHHHHCT.S......SCEEEHHHHHHHHHHHCTSSCHHHHHSTTS-CCHHCTHHHHHHHHHHHHHHCT-SEEEEES--HHHHHHHHH CS
    Ppx-GppA 199 laeltelhgek......gyeitaeeleeliekllqlkkeeelklagvsdeRadvivagalilsavlealeieaviisegalrEGvlysl 281
                 +a++ ++ +++       y++    +++ ie+l++ +  + + + g+ + R ++i +g++++  +l +l  ++++ s ++lr G+l+ l
  CCG91228.1 242 MANMFQESPKEdflkthLYAMGTDAIQKKIEELSRYDLTKLATVPGLPQSRIEIIIPGMAVVFSTLSVLGANSITSSIRGLRYGLLDLL 330
                 ********9889**9999******************************************************************99755 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.024   1.5e+02       2      19 ..      31      48 ..      30     125 .. 0.88
   2 ?    7.5   0.0   0.00088       5.3       2      37 ..     161     204 ..     160     303 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.024
                EEEE-SSSEEEEEEETTE CS
                xxxxxxxxxxxxxxxxxx RF
        FtsA  2 lvDiGagktdvavaedga 19
                + DiG+++++++ a+++ 
  CCG91228.1 31 VYDIGSNTIKFLTARKKD 48
                66*********9999865 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00088
                 EEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHH........H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........x RF
        FtsA   2 lvDiGagktdvavaedgalvhlrvigvggngitkd........i 37 
                 ++D+G+g+++ + ++d+++  + ++++g+  i++         +
  CCG91228.1 161 VLDVGGGSSEWICGKDKKPERFLSLPLGAIRIKDRfiteypvgT 204
                 89*******************99999999999887654445550 PP

>> Grg1  Glucose-repressible protein Grg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   6.8e-05      0.41      34      63 ..      94     123 ..      90     125 .. 0.87
   2 ?   -1.7   0.0       0.6   3.6e+03      45      55 ..     263     273 ..     244     276 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.8e-05
        Grg1  34 snasigdRasAakdavsDKidekkhdakAe 63 
                 +n ++g+R+ Aa +av D ++ kk  ++Ae
  CCG91228.1  94 DNLKVGSRIAAATSAVRDSKNRKKFLKEAE 123
                 5889*****************999877776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.6
        Grg1  45 akdavsDKide 55 
                 + da++ Ki+e
  CCG91228.1 263 GTDAIQKKIEE 273
                 78999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      696  (0.0388198); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2380.29
//
Query:       CCG91229.1  [L=462]
Description: Glutamate decarboxylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-76  258.0   0.0    1.6e-76  257.4   0.0    1.2  1  Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved do
    3.5e-05   22.9   0.0    5.6e-05   22.3   0.0    1.3  1  Aminotran_5    Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.4   0.0   1.8e-80   1.6e-76       9     375 .]      43     382 ..      32     382 .. 0.95

  Alignments for each domain:
  == domain 1  score: 257.4 bits;  conditional E-value: 1.8e-80
                    CSSHHSSHH.HHHHHHHHHHCTGGGS--TTSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCCT-E CS
  Pyridoxal_deC   9 deaapekaesleqilediekilapgvttwhspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpeeflekegg 104
                    ++aa+++ + + ++ ++ + +la++vttw++ e  +l+               ++  kn ++++e+P ++e+e +++ ++a+l++  +++      
     CCG91229.1  43 EVAAQIIRD-ELMLEGNPRLNLATFVTTWMEKEAKELIA--------------ETLDKNLIDKDEYPTTAEIEKRCVRMIAKLFHGAAHEKP---I 120
                    677888888.99******************777766665..............99******************************9966555...6 PP

                    EEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-EEEEE--BTTTBB-HHHHHHHHHHHHCTT.EEE CS
  Pyridoxal_deC 105 gvlqvgssestllallAartkvikemkekgkelkeaeildklvlytsdqahssvekaalvlgvklrvipldengklrgaalekaieedkekGlipf 200
                    g+ ++gsse+++la+lA+++++ k+ k+ g++         ++l+ + ++++ +ek+ ++++v+ r+ip+ + g  +  ++e+     +e+  ++ 
     CCG91229.1 121 GTSTIGSSEAIMLAGLAMKWNWKKRQKKTGNS------STVPNLVMGTNVQVVWEKFCRYFEVEPRMIPVVP-G-SYSTNPENVASYLDEN--TI- 205
                    9*****************************87......5679*****************************9.7.79999***********..77. PP

                    EEEEEBS-TTT-BB--HHHHHHHHHH......CT-EEEEE-TTGGGGGGSGGGGG...GGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGCHH CS
  Pyridoxal_deC 201 fvvatlGttvlgaFddlkelgdicek......ydlwlHvDAAyaGsaficpeirh...llkgieradSitvnphKlllvlldcsalivkdkealqq 287
                     vva+lGtt++g+F+ +++++++++        +++lH+DAA++G  f++p+i +   +++++++++Si+v++hK++lv+ +++++i++ +  l++
     CCG91229.1 206 GVVAILGTTYTGEFEPIEQIHEVIKDfsitngVKIPLHIDAASGG--FVAPFIHPelqWDFRLPLVESINVSGHKYGLVYPGIGWVIWRSEASLPE 299
                    9************************999999999***********..************************************************* PP

                    HH-EEECCCT.TTTTTSEECCCGSSSSSG..HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECS.TTBSSEEEEEES CS
  Pyridoxal_deC 288 alqleaeYLehedsdvaadlgtkaiplsr..rvrilklwfvlralGveglqnqirksvelakyleklirkderfeiva.evelglVcFrlk 375
                    +l+++++YL+        +l+t+++++sr  +++i++++ +lr lG eg++n  ++++ ++  l+++i   + f++++  + ++ +cF +k
     CCG91229.1 300 ELIFKVNYLG-------GELPTFTLNFSRsgSQVIAQYYNFLR-LGKEGYTNIFKAMQAISLHLADQIDSLGIFHMISrGKDIPVICFEIK 382
                    **********.......9***********999***********.**********************************999*******987 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   6.3e-09   5.6e-05      61     218 ..     116     296 ..      95     394 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 6.3e-09
                  GGGEEEES..SHHHHHHHHHHHCCCC.....-TTTSEEEEE..TTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBE.GGGHHHH--TTEEEEEEESB CS
  Aminotran_5  61 eeeiifts..Gtteainlvalslars.....lkpgdeivvt..eaehhanlvpwqelakrtgakvkvipldeegeld.ldelekllnektklvaithv 148
                  +e+ i ts  G++eai l+ l+++ +      k+g++  v   +++ + ++  w++ ++   ++ ++ip+ ++   + +++++++l+e+t  v     
   CCG91229.1 116 HEKPIGTStiGSSEAIMLAGLAMKWNwkkrqKKTGNSSTVPnlVMGTNVQV-VWEKFCRYFEVEPRMIPVVPGSYSTnPENVASYLDENTIGVVAILG 212
                  455554443366666666544443332233444444444441145555555.9*****************88766556************9999999* PP

                  ETTTTEB--HHHHHHHHHH....T..T-EEEEE-TTTTTTS---HHHHTESE.......EEEETTT.TTSSTT-EEEEEEHHHH CS
  Aminotran_5 149 snvtGtiqpveeigklakk....k..galvlvDaaqavghipidvkklgvDf.......lafsghK.llgPtGiGvlyvrkell 218
                   + tG ++p+e+i +++k+    +  ++ +++Daa++   +p+   +l+ Df       + +sghK  l  +GiG ++ r+e+ 
   CCG91229.1 213 TTYTGEFEPIEQIHEVIKDfsitNgvKIPLHIDAASGGFVAPFIHPELQWDFrlplvesINVSGHKyGLVYPGIGWVIWRSEAS 296
                  ***************999643322236789*********************97776666789****879999*******99653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3468.67
//
Query:       CCG91230.1  [L=558]
Description: Nitroreductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-14   52.9   0.0    1.1e-06   28.8   0.0    2.9  3  Nitroreductase  Nitroreductase family


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   6.3e-11   1.1e-06      30     158 ..     109     231 ..     102     245 .. 0.77
   2 ?   -2.6   0.1      0.27   4.8e+03       1      21 [.     332     353 ..     332     362 .. 0.82
   3 !   20.5   0.0   2.3e-08   0.00041      99     169 ..     460     529 ..     442     530 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 6.3e-11
                     S--GGG---EEEEEE.....-CCCHHHHHHHHHHHHHHHHTT..-SS-GGGGGGHHHHHHHHHHHHSSEEEEE---TTS---HHHHHHHHHHHHH CS
  Nitroreductase  30 aPsagnlqpwrfvvv.q...dkelryklaeaalelllkaeaq..aelaqryrkeelklkaqkalagapvlivivatldkserkaaerayryalld 118
                      Ps+gnl+p++++++ +   ++e++ +l+ +++   + ++++   +++ r     ++ ++++++      i++     + ++k++erayry  ld
      CCG91230.1 109 NPSSGNLHPTEVYLLlDaigNEETETALYHYCALYHCLEKRAilGKNLLR-----EWGLTNQFFLVGISSIFW-----RESWKYGERAYRYCQLD 193
                     6*************966677666665555555433333333300333333.....357777777777777777.....8**************** PP

                     HHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S. CS
  Nitroreductase 119 agaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpd 158
                     +g+++ ++  aA++lG+ + +i+g+  +   +  +lg+++
      CCG91230.1 194 IGHVLGTISYAAAMLGWNTYIIEGVGTEL--LGSILGIAS 231
                     *****************************..99***9995 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.27
                     HHH--B---B-S--.--HHHHH CS
  Nitroreductase   1 irkRrSiRkFddep.vpkeele 21 
                     ir+RrS  + d++  ++k+++ 
      CCG91230.1 332 IRRRRSAQAMDNKAwLDKDHFL 353
                     7999999999999999999865 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 2.3e-08
                     -TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S...SEEEEEEEEE CS
  Nitroreductase  99 tldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglp.deeeivvliavG 169
                     +++ks +  ++  y+  + ++g+  q l+L+A+a G+    ig f +++  +++llg+  ++++ ++++++G
      CCG91230.1 460 EFEKSLQLVGPAVYPKLFWQCGLLGQLLYLEAEASGFRGTGIGCFFDDE--CHRLLGINdKQWQSLYHFTIG 529
                     6677777888889999*********************************..********6667777888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3850.51
//
Query:       CCG91231.1  [L=303]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-21   74.8   0.0    2.7e-20   73.3   0.0    1.8  2  YkuD             L,D-transpeptidase catalytic domain
    0.00019   21.2  18.9    0.00027   20.7  18.9    1.1  1  MAP7             MAP7 (E-MAP-115) family
     0.0059   16.4   2.3     0.0081   15.9   2.3    1.3  1  Connexin         Connexin
  ------ inclusion threshold ------
      0.024   15.1  16.3      0.036   14.6  16.3    1.2  1  AAA_23           AAA domain
      0.033   14.4   0.7      0.038   14.2   0.7    1.2  1  DDHD             DDHD domain
      0.039   13.2   0.8      0.049   12.9   0.8    1.2  1  Zip              ZIP Zinc transporter
      0.053   12.3   3.9       0.07   11.9   3.9    1.2  1  Presenilin       Presenilin
      0.055   13.1  12.4      0.037   13.7  10.0    1.7  2  FAM176           FAM176 family
       0.06   12.3   5.4      0.082   11.8   5.4    1.1  1  PA26             PA26 p53-induced protein (sestrin)
      0.067   13.1  13.3      0.096   12.6  13.3    1.2  1  RPN2_C           26S proteasome regulatory subunit RPN2 C-ter
      0.069   12.7  18.1      0.053   13.1  16.3    1.6  2  DDRGK            DDRGK domain
       0.11   12.1   9.7       0.15   11.6   9.7    1.1  1  HAUS6_N          HAUS augmin-like complex subunit 6 N-terminu
       0.17   10.3   0.6       0.22    9.9   0.6    1.1  1  SID-1_RNA_chan   dsRNA-gated channel SID-1
       0.21   11.0  11.5       0.29   10.5  11.5    1.1  1  DUF4746          Domain of unknown function (DUF4746)
       0.22   11.0  10.3       0.29   10.6  10.3    1.2  1  SpoIIP           Stage II sporulation protein P (SpoIIP)
       0.28   10.5  14.6       0.41   10.0  14.6    1.2  1  U79_P34          HSV U79 / HCMV P34
       0.38   11.1  16.6       0.53   10.6  16.6    1.2  1  Vfa1             AAA-ATPase Vps4-associated protein 1
       0.52    9.2  17.4        0.7    8.7  17.4    1.1  1  NARP1            NMDA receptor-regulated protein 1
       0.67    8.0   7.1       0.82    7.7   7.1    1.0  1  Hid1             High-temperature-induced dauer-formation pro
          1    9.1   2.5          2    8.1   2.5    1.4  1  Lysis_col        Lysis protein
        1.3    8.2   8.8          2    7.7   8.8    1.2  1  PPL5             Prim-pol family 5
        1.9    8.4  17.1        3.2    7.7  17.1    1.3  1  Ax_dynein_light  Axonemal dynein light chain
          2    7.1   4.1        3.2    6.4   4.1    1.3  1  O-antigen_lig    O-antigen ligase like membrane protein
        2.7    7.4  11.4        4.6    6.7  11.4    1.3  1  PIEZO            Piezo
        6.4    6.5  15.8        8.6    6.1  15.8    1.1  1  RR_TM4-6         Ryanodine Receptor TM 4-6
          9    6.5  12.4         12    6.0  12.4    1.1  1  GAGA_bind        GAGA binding protein-like family


Domain annotation for each model (and alignments):
>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       9.5   6.5e+03      73      92 ..     115     138 ..      89     154 .. 0.46
   2 !   73.3   0.0   3.8e-23   2.7e-20       4     146 .]     168     301 ..     166     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 9.5
                 EEEEEEEECCCTT..........CECCCCE CS
        YkuD  73 kdpeyldkknskv..........algkvkf 92 
                 k++e++                  +++  +
  CCG91231.1 115 KKKEQE------KlekkqnlsssVNNSADK 138
                 222222......022223344533333333 PP

  == domain 2  score: 73.3 bits;  conditional E-value: 3.8e-23
                 EEEETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTT................C CS
        YkuD   4 ivvdlaeqrllvlyengklvlsfpvsvGgkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskv................a 86 
                 ++++++eq+l ++y++g+l    p+++G   ++d++TPlG+f + +k+  + +n ++         + +++          +                 
  CCG91231.1 168 LEINISEQKL-YVYQGGRLAAISPICSG---TKDHPTPLGRFNVINKEILHRSNKYGCF------VDSKGKII--------YanatvgmippaglhyeP 248
                 689****766.999**************...77************99999998766653......33334444........133334556889999999 PP

                 ECCCCEEE-STTS-EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEEEE CS
        YkuD  87 lgkvkfvfpngsgiyiHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpvvi 146
                      f   +++g+++Hg + p++       ++ShGC+rl+++ a++ly lv+ gtpvv+
  CCG91231.1 249 ADMPFFLRLTDDGVGLHGGYLPGY-------AASHGCVRLPKSFAQDLYPLVPLGTPVVV 301
                 99999************9999965.......89*************************98 PP

>> MAP7  MAP7 (E-MAP-115) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7  18.9   3.9e-07   0.00027      13      69 ..      69     127 ..      58     146 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.9e-07
        MAP7  13 ttdaeeAsriLaEkrrqaReqkereEqereek.eeeerlekeelkrka.aeerarreee 69 
                 t++   As +L+E  ++a +qke+eE++r++k e+ee+++kee ++k+ ++e+ +++++
  CCG91231.1  69 TENIPAASPVLTEEEKKALKQKEKEEKKRLKKlEKEEKKRKEEEEKKKkEQEKLEKKQN 127
                 7777889*********************9876333333333333333303333322222 PP

>> Connexin  Connexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.3   1.2e-05    0.0081      97     162 ..      89     152 ..      14     156 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
    Connexin  97 kiakeekekekeeeekeeeekeeekkkkkekkkkkkkeeekekkkeegkr......rirggllrtYvlqlll 162
                 + +keek++ k+ e++e+++keee+kkkke++k +k        k++ ++        + g  r+Y+++ +l
  CCG91231.1  89 QKEKEEKKRLKKLEKEEKKRKEEEEKKKKEQEKLEK--------KQNLSSsvnnsaDKKPGTERVYIIHRIL 152
                 111222222212222222222222222222222222........2111112222223377778889988665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6  16.3   5.3e-05     0.036     117     194 ..       4     124 ..       3     129 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.3e-05
      AAA_23 117 leqfisellgskki.....ilnlilflgqerfeefelkdkke.....................................rleelekeleeledekklle 173
                 leq+is++l +++i     +++l++ ++q ++++++ +d++                                      + ++l+++ +e++++ k+le
  CCG91231.1   4 LEQMISNILVKRFIfvllfSFTLFVTCQQLSQAMESSNDPLFenndngsspqevntqgnfdnesltenipaaspvlteeEKKALKQKEKEEKKRLKKLE 102
                 689999999999999999999****99999955555433222344445555578888888889999999999999866555555555555555444555 PP

      AAA_23 174 kl.eqekekekeleeleeelee 194
                 k+ +++ke+e++ ++ +e+le+
  CCG91231.1 103 KEeKKRKEEEEKKKKEQEKLEK 124
                 4422333333333333333333 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.7   5.5e-05     0.038     118     170 ..      75     129 ..      11     224 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.5e-05
        DDHD 118 rslelaeeesaslaesskshe.rasesskasqeskaaesstasssaksskaee.k 170
                 +s  l+eee+++l++++k+++ r ++ +k+++++k++e++++++++k +k+++ +
  CCG91231.1  75 ASPVLTEEEKKALKQKEKEEKkRLKKLEKEEKKRKEEEEKKKKEQEKLEKKQNlS 129
                 2223333333333222222221222222222222211111111111111111121 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.8   7.1e-05     0.049      80     175 ..      18     121 ..       5     199 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.1e-05
         Zip  80 llvllGflllllveklltmivek........ksshkektpkkasssss.........esaakksvsndkveeseekedhvaeadtdadskeelrngkqe 161
                 +++l++f l+ +  +l + +  +        +++ + +++ +++ +           +++++ + +++k  +++eke++++ ++ +++       +k+ 
  CCG91231.1  18 FVLLFSFTLFVTCQQLSQAME-SsndplfenNDNGSSPQEVNTQGNFDnesltenipAASPVLTEEEKKALKQKEKEEKKRLKKLEKE-------EKKR 108
                 344555555555554444433.347777766444444444444444443333333332222222222222222222222222222222.......2222 PP

         Zip 162 ksesekeqaseeed 175
                 k+e+ek++++ +e+
  CCG91231.1 109 KEEEEKKKKE-QEK 121
                 2222222211.111 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.9    0.0001      0.07     214     312 ..      20     121 ..       7     172 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0001
  Presenilin 214 LiYsatvvvlaaeekkaevaeseeeeeaekkkeeasesskeeeseeesseksaqsse...........seeeseeesseaessaeesseekeseesses 301
                 L++s t +v+ ++ ++a +++++   e++++ ++ +e +++ + ++es +++  +++           +++e+ee+++ ++ ++ee+++++e+e+    
  CCG91231.1  20 LLFSFTLFVTCQQLSQAMESSNDPLFENNDNGSSPQEVNTQGNFDNESLTENIPAASpvlteeekkalKQKEKEEKKRLKKLEKEEKKRKEEEEK---- 114
                 66666666665444333333333333333333333444444444443333333333344433332222111111111111111111111111111.... PP

  Presenilin 302 seeeeeeeeee 312
                     +++e+e+
  CCG91231.1 115 ----KKKEQEK 121
                 ....1111111 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.7   1.1e+03      38      75 ..      21      58 ..      15      78 .. 0.51
   2 ?   13.7  10.0   5.4e-05     0.037      56     134 ..      85     163 ..      71     172 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.7
      FAM176 38 Lcllviriscrkdlerlkkkkkklkeesekasededee 75
                L+   + ++c++  +  + +++ l e++++ s+ ++ +
  CCG91231.1 21 LFSFTLFVTCQQLSQAMESSNDPLFENNDNGSSPQEVN 58
                44444555666655555555555555544443333322 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 5.4e-05
      FAM176  56 kkkkklkeesekasededeeeeeeeedsseseaeeelsefertlsvnvftsaeelerAqRlEeReriirEIWrngqpdi 134
                 k+ k++++e++k  ++ ++ee++ +e++++++ e+e  e +++ls +v +sa++    +R+    ri+  IW n +p  
  CCG91231.1  85 KALKQKEKEEKKRLKKLEKEEKKRKEEEEKKKKEQEKLEKKQNLSSSVNNSADKKPGTERVYIIHRILPAIWWNINPSE 163
                 222222222222233333333333333333444455566777889*****************************99876 PP

>> PA26  PA26 p53-induced protein (sestrin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   5.4   0.00012     0.082     160     255 ..      18     126 ..       7     150 .. 0.44

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
        PA26 160 lahfhslasfvfgcglepeldlesskklksasas............anekedsseeeeeelerkaaaea................eaevealmermkkl 230
                 +  ++s++ fv +  l++ +++++++ ++++ +             +               +++ +e+                +++ ++ ++r+kkl
  CCG91231.1  18 FVLLFSFTLFVTCQQLSQAMESSNDPLFENNDNGsspqevntqgnfD---------------NESLTENipaaspvlteeekkalKQKEKEEKKRLKKL 101
                 556789999************99999998877652333322222220...............2222222111112222111111111112222222222 PP

        PA26 231 qeeedeeeeaseeelserfekeese 255
                 ++ee++++e +e++++e+ + e+++
  CCG91231.1 102 EKEEKKRKEEEEKKKKEQEKLEKKQ 126
                 2222222211111111111111111 PP

>> RPN2_C  26S proteasome regulatory subunit RPN2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  13.3   0.00014     0.096      49     120 ..      78     153 ..      54     159 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHHHHHHG.....--------------------------------....--SS----SSEEEEESSSB--T CS
      RPN2_C  49 Sttakakarakkkekek....eeeekeedkmdvdeekeekekkekekkekekee....ekkkkekektfekleNpaRVlp 120
                   t  +k+  k+keke+    ++ ekee+k +++eek++ke+++ ekk+    +     ++ ++k++ +e++  + R+lp
  CCG91231.1  78 VLTEEEKKALKQKEKEEkkrlKKLEKEEKKRKEEEEKKKKEQEKLEKKQ----NlsssVNNSADKKPGTERVYIIHRILP 153
                 4444444444444444411222222222222222233333333333333....133335555556666666666666665 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1  16.3   7.7e-05     0.053      36      80 ..      83     127 ..      77     158 .. 0.55
   2 ?   -2.2   0.0       3.9   2.7e+03     145     155 ..     221     231 ..     208     234 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       DDRGK  36 ekreeerkekeekeeekekkkeeeerkkeeekerkeqeeyeklks 80 
                 ek+  ++kekeek++ k+ +kee++rk+eeek++keqe +ek ++
  CCG91231.1  83 EKKALKQKEKEEKKRLKKLEKEEKKRKEEEEKKKKEQEKLEKKQN 127
                 333344444555555555555555555555555555555554332 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.9
                 EEE-TT--EEE CS
       DDRGK 145 GvlDdrGkyiy 155
                   +D +Gk iy
  CCG91231.1 221 CFVDSKGKIIY 231
                 46799999998 PP

>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   9.7   0.00022      0.15     110     219 ..      20     126 ..      14     136 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00022
     HAUS6_N 110 lLlsfssfVlkkvlkekskklalevreaaskkaqdlsklvaahrvslrrflrekaaadrarqkyqenaqllekkerelraeleelqaelkaekeaakke 208
                 lL+sf+ fV  ++l++ +++++  +    +++ ++ ++++ +  +  + + +++ aa       +e+ + l++ke+e +++l++l++e k++ke+++k+
  CCG91231.1  20 LLFSFTLFVTCQQLSQAMESSNDPLF-ENNDNGSSPQEVNTQGNFDNESLTENIPAAS--PVLTEEEKKALKQKEKEEKKRLKKLEKEEKKRKEEEEKK 115
                 789****************3333333.3566667999999999999999999999997..7888999999**************999888665555544 PP

     HAUS6_N 209 kkeasedaeee 219
                 kke+++ ++++
  CCG91231.1 116 KKEQEKLEKKQ 126
                 44444433333 PP

>> SID-1_RNA_chan  dsRNA-gated channel SID-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6   0.00031      0.22     131     201 ..      16     128 ..       2     159 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00031
  SID-1_RNA_chan 131 lsfllltllvvivekvre.....................................................sseekrvkessssesaseslesvs 172
                     ++f+ll+ ++++v+ +++                                                     +           +++++e++++++
      CCG91231.1  16 FIFVLLFSFTLFVT-CQQlsqamessndplfenndngsspqevntqgnfdnesltenipaaspvlteeekkA----------LKQKEKEEKKRLK 99 
                     23333333333332.2223457788999*********99999999999999999888888877654322210..........1222222222222 PP

  SID-1_RNA_chan 173 savrsesessveeesdydtleeiesdknv 201
                     +  ++e++++ eee++ + +e++e+++n+
      CCG91231.1 100 KLEKEEKKRKEEEEKKKKEQEKLEKKQNL 128
                     22233333333333333333333333332 PP

>> DUF4746  Domain of unknown function (DUF4746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  11.5   0.00042      0.29      79     156 ..      80     160 ..      54     172 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
     DUF4746  79 seeetlekqekekektkakeaeltade.paeeeeaeeeeeeeaveeeeeeeeeeeeeeedkeltktktvki.....PpiwvPpn 156
                 +eee++  ++keke++k+ + +l+++e + +eee+++++e+e++e++++ +  +++++++k+ t+     i     P+iw   n
  CCG91231.1  80 TEEEKKALKQKEKEEKKRLK-KLEKEEkKRKEEEEKKKKEQEKLEKKQNLSSSVNNSADKKPGTERVY--IihrilPAIWWNIN 160
                 34444444444444444333.33444437788888888888899999777777777776666555433..333578****6444 PP

>> SpoIIP  Stage II sporulation protein P (SpoIIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  10.3   0.00042      0.29      17      83 ..      82     149 ..      47     170 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00042
      SpoIIP  17 epteeapaeesekeekekeeeeeeekeeeeeeeikkeekeeekekeedseeeee.......kldkskpevlIYh 83 
                 e+ ++ +++e+e++++ k+ e+ee+k +eeee+ kke+ e+ ++k++      +       +++++ ++v+I h
  CCG91231.1  82 EEKKALKQKEKEEKKRLKKLEKEEKKRKEEEEKKKKEQ-EKLEKKQN-----LSssvnnsaDKKPGTERVYIIH 149
                 11111111222222222222222222222222222222.22222222.....1133344458888899999987 PP

>> U79_P34  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  14.6    0.0006      0.41     144     205 ..      81     143 ..      58     150 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0006
     U79_P34 144 ekegraldrkkaddeqr.krsgkqkekrkvedidkkkedekrkeeerkksdedkssdkkeeld 205
                 e+e +al +k++++++r k+  k+ +krk e+  kkke+ek ++ +   s+ ++s+dkk + +
  CCG91231.1  81 EEEKKALKQKEKEEKKRlKKLEKEEKKRKEEEEKKKKEQEKLEKKQNLSSSVNNSADKKPGTE 143
                 445556666666665553334444555555566666666666555555555666666665554 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  16.6   0.00077      0.53      79     146 ..      82     149 ..      46     155 .. 0.46

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00077
        Vfa1  79 yeekqkkkkekekkkkekd....kkdkdkkkekekdkkkekekeeekkkelkkaeeeleekeeprvkkykLh 146
                  e+k  k+keke+kk        +k+++k ke+e++kkke+ek e+k+ +l+++ +++++k+  + + y +h
  CCG91231.1  82 EEKKALKQKEKEEKK---RlkklEKEEKKRKEEEEKKKKEQEKLEKKQ-NLSSSVNNSADKKPGTERVYIIH 149
                 122222222222222...122234444444444444555555333333.33333333222233333345555 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  17.4     0.001       0.7     394     446 ..      81     131 ..      64     152 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.001
                 G---HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--........-- CS
       NARP1 394 eeekeeaksaelseaerkklrkkakkaekkaekeeaekaekeke.kkaaekkak 446
                 ee   e+k  + +e+e+kk  kk+ k+ekk+++ee++k++++++ +k+++ +++
  CCG91231.1  81 EE---EKKALKQKEKEEKKRLKKLEKEEKKRKEEEEKKKKEQEKlEKKQNLSSS 131
                 22...2233355666667777777777777777666655555442222222222 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   7.1    0.0012      0.82     557     692 ..       7     139 ..       4     172 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
        Hid1 557 LvYsilrkrkvfealrnltlesaseeiersnesarldsideeeeenssessrieesrsesrspslsevpelksslaitddeskaereksatessssqav 655
                 ++  il kr +f  l ++tl    ++ ++  e  ++++   e++ n s++++++++ +  ++  ++++p   s +++++++++ ++++++++++ ++++
  CCG91231.1   7 MISNILVKRFIFVLLFSFTLFVTCQQLSQAME--SSNDPLFENNDNGSSPQEVNTQGNFDNESLTENIPA-ASPVLTEEEKKALKQKEKEEKKRLKKLE 102
                 55566667777777777777777666666666..444444444555555555555555555555566664.4444444444444445455555555555 PP

        Hid1 656 sqlremsekarakesaesteesrqesatskkspsgms 692
                 +++++ +e++++k++++++ e++q+ ++s ++ +   
  CCG91231.1 103 KEEKKRKEEEEKKKKEQEKLEKKQNLSSSVNNSADKK 139
                 5344444444444444444444444444433333333 PP

>> Lysis_col  Lysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.5     0.003         2       8      23 ..      16      31 ..      11      33 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.003
   Lysis_col  8 flFilifsifLLvACQ 23
                f+F+l fs  L v CQ
  CCG91231.1 16 FIFVLLFSFTLFVTCQ 31
                9**************9 PP

>> PPL5  Prim-pol family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   8.8    0.0028         2     187     251 ..      81     144 ..      64     152 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0028
        PPL5 187 eveeksskkkskekkkklkkktsrkkkkegkkekesekeeededeeddlsdlvnvvegssaaakk 251
                 e e+k  k+k+ke+kk lkk  ++++kk++++e++++ke+e+ +++++ls  vn   ++++++++
  CCG91231.1  81 EEEKKALKQKEKEEKKRLKKL-EKEEKKRKEEEEKKKKEQEKLEKKQNLSSSVNNSADKKPGTER 144
                 323333333333333333333.3444444555555566667778888999999887666666555 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  17.1    0.0047       3.2     132     178 ..      81     127 ..      58     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0047
  Ax_dynein_light 132 eeekeelekqvaelkaklealekrekerrqeeekkheeeieflkksn 178
                      eeek+ l+++ +e k++l++lek+ek+r++eeekk++e+ +  kk+n
       CCG91231.1  81 EEEKKALKQKEKEEKKRLKKLEKEEKKRKEEEEKKKKEQEKLEKKQN 127
                      899*******************************9999988888887 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   4.1    0.0047       3.2     252     337 ..      19     134 ..       2     155 .. 0.43

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0047
  O-antigen_lig 252 illvligillaiypyspiyrrkelkekeieiksekk...................................eeeeikneikenykseglk....ea 308
                    +ll  +++++++ ++s++++ ++     +e++++                                     +++e++++       + lk    e+
     CCG91231.1  19 VLLFSFTLFVTCQQLSQAMESSND--PLFENNDNGSspqevntqgnfdnesltenipaaspvlteeekkalKQKEKEEK-------KRLKklekEE 105
                    333334455566666666664432..22222222222233455555555555555555555555443222222222211.......1222222322 PP

  O-antigen_lig 309 vleqyeyandkqfsqellkeeveslllsn 337
                     + ++e++++k+++++l k++  s  ++n
     CCG91231.1 106 KKRKEEEEKKKKEQEKLEKKQNLSSSVNN 134
                    22233333333333333333333444444 PP

>> PIEZO  Piezo
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  11.4    0.0066       4.6      95     148 ..      81     134 ..      75     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0066
       PIEZO  95 akikkevkarkeeekksleqlkrqmerikakqqkikkgkkeseeeelakeeeee 148
                 ++ kk++k++++eekk l++l ++ ++ k++ +k kk++++ e+++  +++ ++
  CCG91231.1  81 EEEKKALKQKEKEEKKRLKKLEKEEKKRKEEEEKKKKEQEKLEKKQNLSSSVNN 134
                 56789******************9999999999977776666666633322222 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  15.8     0.013       8.6      83     132 ..      78     127 ..      32     148 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.013
                 X.XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..... CS
    RR_TM4-6  83 t.pelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeee 132
                   +e++kk  +++e+ee+k+ ++ +++e+ +++++e+++k+e+ek +++++
  CCG91231.1  78 VlTEEEKKALKQKEKEEKKRLKKLEKEEK-KRKEEEEKKKKEQEKLEKKQN 127
                 12333333333222222222222222222.222222222222222211111 PP

>> GAGA_bind  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  12.4     0.018        12     111     186 ..      54     125 ..      25     142 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.018
   GAGA_bind 111 lqeaeapelekeevasselveesavvekeeaakkrqqgkrpkepkakkakkaarkpkeegedlalkkakrsksekk 186
                 +qe +++ + + ++  +e ++ +++v +ee++k+ +q++++ +++ kk +k+++k kee+e++++   +++k ekk
  CCG91231.1  54 PQEVNTQGNFD-NESLTENIPAASPVLTEEEKKALKQKEKEEKKRLKKLEKEEKKRKEEEEKKKK---EQEKLEKK 125
                 33333222223.33335666666666666666665554455555558888877777777765422...23333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3800  (0.211947); expected 358.6 (0.02)
Passed bias filter:                     1518  (0.0846673); expected 358.6 (0.02)
Passed Vit filter:                       410  (0.022868); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.44
# Mc/sec: 2063.24
//
Query:       CCG91232.1  [L=66]
Description: hypothetical protein MFUM_1010052 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 531.29
//
Query:       CCG91233.1  [L=72]
Description: hypothetical protein MFUM_1010054 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 514.81
//
Query:       CCG91234.1  [L=255]
Description: putative Uncharacterized ABC transporter ATP-binding protein HI_1272 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-33  114.5   0.0    6.6e-33  114.1   0.0    1.1  1  ABC_tran        ABC transporter
    2.5e-14   53.8   0.5      5e-06   26.5   0.0    2.1  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    0.00037   20.9   0.0     0.0006   20.2   0.0    1.3  1  AAA_16          AAA ATPase domain
    0.00039   19.9   0.1       0.18   11.2   0.0    2.1  2  SMC_N           RecF/RecN/SMC N terminal domain
    0.00071   19.4   0.1        0.2   11.3   0.1    2.1  2  AAA_15          AAA ATPase domain
     0.0012   18.5   0.1     0.0024   17.6   0.1    1.4  1  AAA_29          P-loop containing region of AAA domain
     0.0057   16.9   0.1      0.062   13.5   0.0    2.2  2  AAA_28          AAA domain
     0.0058   17.1   0.1     0.0094   16.5   0.1    1.3  1  AAA_23          AAA domain
  ------ inclusion threshold ------
      0.014   15.7   0.1       0.25   11.6   0.0    2.1  2  AAA_22          AAA domain
      0.014   14.0   0.0          1    7.9   0.0    2.0  2  AAA_13          AAA domain
      0.032   14.1   0.0      0.046   13.6   0.0    1.3  1  ATPase_2        ATPase domain predominantly from Archaea
      0.042   14.0   0.0       0.14   12.3   0.0    2.0  1  AAA_33          AAA domain
      0.054   14.0   0.0       0.11   13.0   0.0    1.6  1  AAA_18          AAA domain
       0.06   13.3   0.0       0.11   12.5   0.0    1.3  1  RsgA_GTPase     RsgA GTPase
      0.063   13.2   0.3       0.16   11.9   0.0    1.8  2  NACHT           NACHT domain
       0.07   13.6   0.1        0.9   10.0   0.1    2.3  1  AAA             ATPase family associated with various cellula
       0.17   11.6   0.0       0.32   10.7   0.0    1.4  1  Cytidylate_kin  Cytidylate kinase
       0.22   11.4   0.0       0.41   10.5   0.0    1.4  1  Rad17           Rad17 P-loop domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   0.0   6.6e-36   6.6e-33       1     137 []      18     167 ..      18     167 .. 0.97

  Alignments for each domain:
  == domain 1  score: 114.1 bits;  conditional E-value: 6.6e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esd 82 
                 l+ +sl+l++ge++a++G+nG+GKStLl++lag  +p +Ge+ ++g +l++++ ++l ++i++l+q +q f  ++v e                  +++
  CCG91234.1  18 LQGISLTLYPGEIIALLGPNGSGKSTLLRILAGVRRPLQGEVVFEGVPLSRIPPRILARRIAYLTQMHQAFLPYRVVELvrmgriphrspfasfssQDE 116
                 689****************************************************************9999999999999************9988888 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + +e al+kl++ +l++++     + LS Gq+q v+laral++ +k+l+lDEp+a
  CCG91234.1 117 AAVEGALHKLSIAHLRERPY----AALSVGQRQLVQLARALAQSSKILILDEPMA 167
                 88*****************9....*****************************85 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1   9.3e-09   9.3e-06       1      24 [.      30      53 ..      30      80 .. 0.80
   2 !   26.5   0.0     5e-09     5e-06     212     297 ..     110     196 ..      89     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 9.3e-09
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                + +l GpNgsGKS+LL++l +++r
  CCG91234.1 30 IIALLGPNGSGKSTLLRILAGVRR 53
                5689***************99975 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 5e-09
      AAA_21 212 vderlrer....gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 ++  ++e+     ++ l   + +e+p++ lS G+++l  l+ al++     ++l++DEp ++L++  +  +l+  ++l+r+g  ++++TH
  CCG91234.1 110 SFSSQDEAavegALHKLSIAHLRERPYAALSVGQRQLVQLARALAQSS---KILILDEPMASLDYGNQWLFLQECEKLAREGYTILFSTH 196
                 44444444666677777777899**************99999999877...9***********************99999********** PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     6e-07    0.0006      25     143 ..      29     164 ..      20     189 .. 0.57

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 6e-07
      AAA_16  25 elvllsGesGvGKsslvrellralekd...ggif.....lrgkcdqlesaipysa.laqalareellrqllde.......aesaeleawrekleeala. 106
                 e++ l G+ G+GKs+l+r l+  +++    +++f      r   + l + i+y++   qa+     + +l ++       +    ++ ++ + e+a++ 
  CCG91234.1  29 EIIALLGPNGSGKSTLLRILA-GVRRPlqgEVVFegvplSRIPPRILARRIAYLTqMHQAFLP-YRVVELVRMgriphrsP----FASFSSQDEAAVEg 121
                 899**************8877.44444222133333332333333335556665556666655.44444444445532221....22222222222224 PP

      AAA_16 107 ........avpelagaea........srllellkrllallsrderplvlvlDd 143
                                           s   ++l +l++ l++ ++  +l+lD+
  CCG91234.1 122 alhklsiaH--------LrerpyaalSVGQRQLVQLARALAQSSK--ILILDE 164
                 333443333........1444444457777777777755555455..777775 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00018      0.18      25      41 ..      29      45 ..      20      50 .. 0.85
   2 !    6.9   0.0    0.0038       3.8     136     185 ..     138     183 ..      76     203 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
                SEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnll 41
                ++ a++GpNGSGKs ll
  CCG91234.1 29 EIIALLGPNGSGKSTLL 45
                56799*********987 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0038
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke 185
                 +LS G+++Lv la  +A    + + + +lDe  a LD  n   + +  ++
  CCG91234.1 138 ALSVGQRQLVQLARALA----QSSKILILDEPMASLDYGNQWLFLQECEK 183
                 79*********998877....556799**********9998777665555 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1    0.0002       0.2      25      43 ..      30      48 ..      18      50 .. 0.85
   2 !    6.1   0.0    0.0076       7.6     322     364 ..     155     196 ..     118     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
      AAA_15 25 ltvliGkNnsGKSsileal 43
                +  l G+N+sGKS++l++l
  CCG91234.1 30 IIALLGPNGSGKSTLLRIL 48
                78999***********998 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0076
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 ++++il+++EP a+L + +q  + + + +la+++   ++++TH
  CCG91234.1 155 QSSKILILDEPMASLDYGNQWLFLQECEKLAREGY-TILFSTH 196
                 34588*****************************8.999***9 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.4e-06    0.0024      20      39 ..      26      45 ..      18      51 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.4e-06
      AAA_29 20 dlkgatlltGpsGsGKSTll 39
                 + +++ l Gp+GsGKSTll
  CCG91234.1 26 YPGEIIALLGPNGSGKSTLL 45
                5556899************8 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   6.2e-05     0.062       2      25 ..      31      54 ..      30      66 .. 0.76
   2 ?    1.1   0.0      0.41   4.1e+02      51      80 ..     133     164 ..     113     202 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.2e-05
      AAA_28  2 ivitGgestGKTtlleaLaargyp 25
                i+++G+ ++GK+tll+ La    p
  CCG91234.1 31 IALLGPNGSGKSTLLRILAGVRRP 54
                89****************954333 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.41
      AAA_28  51 dllafaervleeqleeeaaa..aankvlfcDr 80 
                 ++   a  v + ql ++a+a  +++k+l++D 
  CCG91234.1 133 ERPYAALSVGQRQLVQLARAlaQSSKILILDE 164
                 44455556666677777666668999999996 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   9.5e-06    0.0094      21      39 ..      30      48 ..      16      51 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.5e-06
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                + ++ GpNG+GK+T+l+ +
  CCG91234.1 30 IIALLGPNGSGKSTLLRIL 48
                78899**********9866 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00025      0.25       6      25 ..      29      48 ..      26      69 .. 0.91
   2 ?    2.0   0.0      0.23   2.3e+02      80     115 ..     147     181 ..     102     209 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
      AAA_22  6 gilvvtGesGtGKTtllrrl 25
                 i+++ G+ G+GK+tllr l
  CCG91234.1 29 EIIALLGPNGSGKSTLLRIL 48
                689**************976 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.23
      AAA_22  80 ealeqalraravielliiDEaqh.lrseealeeLrsl 115
                  +l++al +    ++li+DE    l+  +++ +L ++
  CCG91234.1 147 VQLARALAQS--SKILILDEPMAsLDYGNQWLFLQEC 181
                 3444444444..459****944447524444444333 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0     0.001         1      23      40 ..      35      52 ..      28      62 .. 0.86
   2 ?    4.1   0.0     0.015        15     525     571 ..     155     198 ..     145     203 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.001
      AAA_13 23 GwNGaGKTtLSrllrsle 40
                G NG+GK+tL r+l+ + 
  CCG91234.1 35 GPNGSGKSTLLRILAGVR 52
                99************9874 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.015
      AAA_13 525 gkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnl 571
                 +  ki ++D P+ SLD + +++     ++ +  ++ +  ++ +TH l
  CCG91234.1 155 QSSKILILDEPMASLDYGNQWLFLQECEKLA--REGY-TILFSTHAL 198
                 4679************999998888888887..3444.455577765 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.6e-05     0.046      19      54 ..      27      62 ..      20     130 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.6e-05
    ATPase_2 19 pneiyfiYGpegsGKtaLlkeiienledkdkyviyy 54
                p ei+ + Gp gsGK++Ll+ ++  ++ ++ +v++ 
  CCG91234.1 27 PGEIIALLGPNGSGKSTLLRILAGVRRPLQGEVVFE 62
                6789999****************9999999999995 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00014      0.14       2      22 ..      31      51 ..      30     196 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
      AAA_33  2 vllvGlpGsGKstlaerllkk 22
                + l G++GsGKstl++ l+  
  CCG91234.1 31 IALLGPNGSGKSTLLRILAGV 51
                6788***********988643 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00011      0.11       1      19 [.      31      49 ..      31      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00011
      AAA_18  1 IlltGtpGvGKttlakeLs 19
                I+l G+ G+GK+tl + L+
  CCG91234.1 31 IALLGPNGSGKSTLLRILA 49
                89**************995 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011      0.11      99     121 ..      28      50 ..      11      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
                  TSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallp 121
                  +++++l+G+ G GKStL+  l++
   CCG91234.1  28 GEIIALLGPNGSGKSTLLRILAG 50 
                  5899**************99987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00016      0.16       2      21 ..      30      49 ..      29      64 .. 0.90
   2 ?   -1.6   0.1       2.2   2.2e+03     100     100 ..     114     114 ..      72     164 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00016
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +++l G++GsGK+tLl+ la
  CCG91234.1 30 IIALLGPNGSGKSTLLRILA 49
                5899************9775 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.2
                 . CS
       NACHT 100 k 100
                 +
  CCG91234.1 114 Q 114
                 1 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1    0.0009       0.9       2      21 ..      32      51 ..      31     171 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0009
                EEESSTTSSHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavake 21
                 l Gp G GK++l + +a  
  CCG91234.1 32 ALLGPNGSGKSTLLRILAGV 51
                589*************9976 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00032      0.32       1      19 [.      31      49 ..      31      56 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00032
                    EEEE-STTSSHHHHHHHHH CS
  Cytidylate_kin  1 iaiDGPagsGKssvarala 19
                    ia+ GP gsGKs++ r+la
      CCG91234.1 31 IALLGPNGSGKSTLLRILA 49
                    8999*************99 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00041      0.41      38      67 ..      21      50 ..      13      60 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00041
       Rad17 38 dvLesrkkriLLisGPsGCgkstvvkvLsk 67
                 +L   + +i+ + GP G gkst +++L+ 
  CCG91234.1 21 ISLTLYPGEIIALLGPNGSGKSTLLRILAG 50
                5666667789999***************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 1942.91
//
Query:       CCG91235.1  [L=342]
Description: Transport system permease protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-76  257.3  29.7      2e-76  257.0  29.7    1.0  1  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.0  29.7   1.1e-80     2e-76       4     310 ..      22     332 ..      18     334 .. 0.96

  Alignments for each domain:
  == domain 1  score: 257.0 bits;  conditional E-value: 1.1e-80
       FecCD   4 lllllslllgavkispsevfeallgka.......dsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllll 95 
                 l  ++sl+lg ++i+++e++++l gka       + + +++++e+r+pr++aa+lvG +L+++Ga++Q+++ NpLa+P +lG+ sga++g vla+l++ 
  CCG91235.1  22 LEGAFSLCLGRYPIPIHELIHSLWGKAavadgsqQTIFEKVLWEIRFPRIVAAILVGSSLSISGASFQAIFSNPLASPALLGVLSGASFGGVLAMLVF- 119
                 55689********************999998765555566********************************************************97. PP

       FecCD  96 gslslfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllll.neealesilfwllGslsgaswskvllllvlllllllll 193
                   ++ + + ++ f+g+l+a+ll +++ar  +g+  l+l+L Gi+ +al+++l sl ++++   ++l  i++wl+G lsg++ + + ll+  ++ ++l l
  CCG91235.1 120 --APGAVVGFCVFVGGLAAVLLSVAVARAIAGEGVLSLVLGGIVSNALFTSLLSLAKYVAdPYNQLPGIVYWLMGGLSGVDRKIISLLWFPMTGAILGL 216
                 ..66678999**************************************************8899*********************************** PP

       FecCD 194 lllarkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptel 292
                 ++la +l++l+lg+++A+slG++v + rl+++ l++l+++++v+l+G+ig++GLivPh++r+lvgad+++l+++sal Ga++ll  d l+r+l+ p+e+
  CCG91235.1 217 VMLAPHLNALSLGEDEARSLGIHVWKSRLAVIGLSTLASSLTVVLAGTIGWIGLIVPHLLRFLVGADNERLVLASALGGAVFLLGIDDLSRTLF-PMEV 314
                 *********************************************************************************************7.9*** PP

       FecCD 293 pvgivtaliGapffiyll 310
                 p+gi+t+l+G++ f++ll
  CCG91235.1 315 PLGILTELFGVLAFLLLL 332
                 ***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2294.05
//
Query:       CCG91236.1  [L=345]
Description: Luciferase-like, subgroup [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-42  145.4   0.0    3.6e-42  144.9   0.0    1.1  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.0     2e-46   3.6e-42      19     310 ..      16     290 ..       5     293 .. 0.89

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 2e-46
  Bac_luciferase  19 saslrylvelaraaEelGfdavwvaehhggpgga.......ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGRfglglg 106
                     +  +r+ + la+++E+lGf ++w+ e h+ ++ +        d+++l++alaa T+r+r+g +++ l+++hP+++A+++atLd++sgGR+++g+ 
      CCG91236.1  16 G-EVRDWLVLAEEVESLGFSSLWINEEHFQSRAHtgaarncVDPMVLAGALAAKTSRLRIGFSALLLPLHHPIRMAEAIATLDRISGGRIDFGIS 109
                     3.6888999********************98888************************************************************* PP

  Bac_luciferase 107 tggpaveerrfGvdhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgpiP.vyvaaaspaglelaarhadglllag.eppeea 199
                     +gg++  +++fGvd ++  + +   ++ +  +wr+e+ +           ++lp+p+q+p+P +y+a +  + +++aa+ +  l+ +g ++p ++
      CCG91236.1 110 RGGNQRYFDAFGVDPARADEAFITSLRQILDCWREEPLSLGANS-----YCILPKPVQRPHPpIYIATYHKERARWAAEQGFYLIQHGiQSPTHL 199
                     ***************99999999999999999988888664444.....36788887777444******************************** PP

  Bac_luciferase 200 aelierlragaaeagrdpadirvgisltvivadteeeAraearaliagldfyaldsegagreaeaaeiqeeedanlwagaadavpdelvaatalv 294
                     a  +  +r+     gr   + +v ++++++v +++  A +e+   i               e +a  ++   ++++  + ++++p++++++++++
      CCG91236.1 200 ATILSAYRS---GGGR---PEQVPVGRFLYVSNDDRSAYRELFPVI--------------EELTAFLRKIGITKRGVLTEEELIPERFYQEIVIA 274
                     ********9...6777...457888999999999999999997777..............4445556888899999999999************* PP

  Bac_luciferase 295 Gtpeqvaerlaayaea 310
                     G p+++ae l+ ++e+
      CCG91236.1 275 GGPATCAEHLRSMREL 290
                     ***********98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 2302.03
//
Query:       CCG91237.1  [L=379]
Description: putative Periplasmic binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-15   56.0   0.0      8e-15   55.1   0.0    1.4  2  Peripla_BP_2  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0      0.53   9.5e+03      95     112 ..      62      79 ..      56      85 .. 0.74
   2 !   55.1   0.0   4.4e-19     8e-15      47     235 ..     139     313 ..     111     314 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 0.53
                   HHHHHHHHHHHHHTT-HH CS
  Peripla_BP_2  95 eslkeqiralgellgled 112
                    s+ke + + g+ll+ ++
    CCG91237.1  62 GSWKEAVDTEGHLLHVPQ 79 
                   799999999999998776 PP

  == domain 2  score: 55.1 bits;  conditional E-value: 4.4e-19
                   SSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS-EEE----TTSHHHHHHHHHHHHHTT-HHHHHHHH...HHHHHHHHHHHHTS-TT.-EEE CS
  Peripla_BP_2  47 dgeidvEklaalkPDlvilskglgltdedeellksgiptvivessntgeslkeqiralgellgledeaeklv...aeidsklaaaksaidsekpkpv 140
                    + +++E+l+al+PDlv++s+ +     ++ l++ + p++    ++  e+l + +r lg ++g e++a  +v   ++id+ + ++ + i+ e ++p 
    CCG91237.1 139 ENRPNLETLLALHPDLVVASPEI-----AKALEACKLPVFSLKLRSR-EDLPKAVRLLGVAVGAEEQASSYVsywERIDRIVSRVVAEIPRE-QRPR 228
                   689********************.....999999999*****99997.*********************99833347788888888888888.5555 PP

                   EEEEETTE..EEEE-TTSTTTHHHHTS--EESTTT--STT-EEE-HHHHHHH--SEEEEEEHHHHT-S--HHHHT-SHHHHTSHHHHTT-EEEE- CS
  Peripla_BP_2 141 lvfggadeggyvvagsnsyigdlldalgieniaaeskkseyeeisaEqilasdpdvifvsgraeadnktgleflkenpllaelpAvkngrVyald 235
                   +++ +  +    +++    +   ++++g+++++a    se  + s Eq+l ++pd+++v         +  e   ++  +a+l Av+ +rV +++
    CCG91237.1 229 VLYCSLRS----LSTPHRIVDRWIEDAGGQSLTAGDRPSEEYRFSIEQLLVWNPDILIVEEP------EEIELARKDARFASLSAVRRRRVLCMP 313
                   55554555....7888888999**********888888888899******************......99999999***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2519.63
//
Query:       CCG91238.1  [L=954]
Description: Outer membrane receptor protein, mostly Fe transport (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0084   16.7   0.1      0.019   15.5   0.1    1.5  1  Plug      TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1     1e-06     0.019      26     104 ..     235     307 ..     195     310 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1e-06
                 HHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHCTTSSTG CS
        Plug  26 adalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpianggsgagdlssidpedierievlkGpasalyGsda 104
                   +   +pg    s+ +gg ++  ++RG+   + + +v+G++  + ++ +++    + +++e++++  Gpa a +G+  
  CCG91238.1 235 VSIAMLIPGAY--SGLNGGFGTAPTVRGF---AATPYVNGIQ-DTLQHFSFGGVPWNWNMVESMDLTEGPANAVFGATQ 307
                 22333466666..899999999*******...8999*****6.667788888888899******************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 6709.97
//
Query:       CCG91239.1  [L=167]
Description: membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0069   16.2   0.5     0.0069   16.2   0.5    1.6  2  MauE      Methylamine utilisation protein MauE


Domain annotation for each model (and alignments):
>> MauE  Methylamine utilisation protein MauE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.5   3.9e-07    0.0069      53     132 ..       6      84 ..       1     103 [. 0.79
   2 ?   -2.3   0.2      0.17   3.1e+03       4      21 ..     124     141 ..     119     153 .. 0.51

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.9e-07
        MauE  53 valvlPlvelavavglvvppaaelaavvaagllvvfalalainvarGrtaidcGcfrnglkqkvswllvlrnialaaval 132
                 ++ ++ l+e av  +++ + +   + +++  ll +f+ a+   ++rG  +i+cG f  + +++  w+ + rn  l+ + +
  CCG91239.1   6 FSILILLLESAVVGSFLFSLMWLGTLSLSLILLTIFSFAVLPQLLRGNKRINCGYFSVSKEKN-LWMILARNFLLCCLEF 84 
                 6666667777776666666666666778888999**********************8775555.5888899999988766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.17
        MauE   4 laePvvavlvrlflalll 21 
                 +a P+  +++   lal +
  CCG91239.1 124 IASPILSWIAISCLALSV 141
                 445555554444444322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1349.45
//
Query:       CCG91240.1  [L=41]
Description: hypothetical protein MFUM_1010064 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 349.13
//
Query:       CCG91241.1  [L=65]
Description: hypothetical protein MFUM_1010065 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       128  (0.00713927); expected 358.6 (0.02)
Passed bias filter:                      124  (0.00691617); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 458.92
//
Query:       CCG91242.1  [L=55]
Description: hypothetical protein MFUM_1010066 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 422.89
//
Query:       CCG91243.1  [L=225]
Description: Soluble lytic murein transglycosylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-20   71.9   0.0    5.9e-20   71.1   0.0    1.4  1  SLT            Transglycosylase SLT domain
     0.0067   16.1   0.0       0.02   14.6   0.0    1.6  1  Lysozyme_like  Lysozyme-like
  ------ inclusion threshold ------
       0.19   11.7   0.9       0.29   11.1   0.9    1.3  1  DUF3290        Protein of unknown function (DUF3290)


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   9.9e-24   5.9e-20       2     107 ..      36     147 ..      35     156 .. 0.89

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 9.9e-24
                 HHHHHHHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT...-SHHHHCSHHHHHHHHHHHHHHHHHTTTT...HHHHHHHHH CS
         SLT   2 liikaekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvk...lsedelldPeknisagakyLkslykqyng...slllalaAY 94 
                 li +++ +ygv+p l++a++++ES+f p+ + k+g  GLmQi +   k+   + k    s+d lldP+ ni++g +yL++ ++++++      +ala Y
  CCG91243.1  36 LIAEYAHEYGVDPLLIKAVIWKESRFRPQKIGKNGERGLMQIREPALKDWIQKEKtnpISIDALLDPKLNIQIGSWYLGQALQRWQKtdnPAVFALAEY 134
                 688999*************************************9999987666666899*********************999999876677889999* PP

                 HH-HHHHHHTTHS CS
         SLT  95 NaGegtvkkakke 107
                 NaG+ +   + + 
  CCG91243.1 135 NAGRRNALHWVDP 147
                 *****99999765 PP

>> Lysozyme_like  Lysozyme-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.4e-06      0.02       5     109 ..      31     153 ..      27     167 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.4e-06
  Lysozyme_like   5 leykplvekeakeqdieeyvelilaiimqEsk......G..kgeDvMQssEslglk...........eneikdpeeSikqGvkylaealekakekg 81 
                    ++y  l+ ++a+e++++    li a+i +Es       G   ++ +MQ  E +               +++ dp+  i+ G  yl +al++ ++++
     CCG91243.1  31 MKYDDLIAEYAHEYGVDPL--LIKAVIWKESRfrpqkiGknGERGLMQIREPALKDwiqkektnpisIDALLDPKLNIQIGSWYLGQALQRWQKTD 124
                    7899***********9865..9*********83333334323456788888877778899998888788889************************ PP

  Lysozyme_like  82 vdletavQaYNfGkg.Yidyvaknggkyt 109
                         a+  YN G+   +++v  ++ + +
     CCG91243.1 125 NPAVFALAEYNAGRRnALHWVDPQNPTSS 153
                    *************8548999987776555 PP

>> DUF3290  Protein of unknown function (DUF3290)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.9   4.9e-05      0.29      15      50 ..       2      37 ..       1      40 [. 0.93

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.9e-05
     DUF3290 15 ndllryililvlllllivvlilylrnrldtkyRdLs 50
                ++++++ilil+l +++i++l++ +  ++++ky dL+
  CCG91243.1  2 TKTINLILILFLTVVIILFLWQDIASKIEMKYDDLI 37
                57899*****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1675.48
//
Query:       CCG91244.1  [L=296]
Description: Ribonuclease BN family enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-41  140.4  19.4    8.8e-41  140.2  19.4    1.0  1  Virul_fac_BrkB  Virulence factor BrkB


Domain annotation for each model (and alignments):
>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2  19.4   4.9e-45   8.8e-41       2     255 ..      17     273 ..      16     276 .. 0.84

  Alignments for each domain:
  == domain 1  score: 140.2 bits;  conditional E-value: 4.9e-45
  Virul_fac_BrkB   2 eddlsllAaalayytllSlfPlllvllavlgllglddelqeqlldllaevlpegaaevvedil.q.rll..nqaslgllglavll.wsasggvsa 91 
                     +++ s + aal+ y l+S++Pl+lvl+++++l++ + ++ +++l  l ++l ++ ++++++   + +++  +++  +ll++++ l + asg++ +
      CCG91244.1  17 KHNASKMGAALSCYILFSIIPLILVLVSLASLFLDPIKVNQEILFILLQILGDESINLFKNSQfHvSFEfwKNP-RELLTVIFSLlFGASGAFME 110
                     6899***************************966699999**********999777777655422244433444.66666666666********* PP

  Virul_fac_BrkB  92 lrralnkiygveesrs.....flrkrllsllllllllvllllslvlsvflqslllasapllglglelsellllqllrwlvallllvlafallYrv 181
                     l+++ln+i+++e++++     f+++++ls+++++  ++llll+l+ls+ +   + +   l ++   l+++ + + +++ +++++  l+fallY++
      CCG91244.1 111 LQKSLNEIWEIEPGKEagiwhFVQRQFLSFFIVFFSGLLLLLFLLLSTTFLETASF---LREFSPGLKKY-IPEGIQL-ASFIIEGLIFALLYKI 200
                     ***********8877556777*************9999999999999877663433...33444444555.5666666.566799999******* PP

  Virul_fac_BrkB 182 lpnvkvrlraalpGallaallwllvkilfslylsnfasynaiYGslgaliilllWlylsalilLlGaelnaelq 255
                     lp++kv +r++++Ga++a++l++++k l+ + l++ +++ +iYG+ g+ i lllW++++++i+++Gael++e++
      CCG91244.1 201 LPDTKVLFRDVWLGAAFASTLIFIGKSLLWISLRK-SAVATIYGAGGSAIMLLLWIFYCSQIFFFGAELCREYA 273
                     **********************************9.679********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2314.87
//
Query:       CCG91245.1  [L=157]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1322.64
//
Query:       CCG91246.1  [L=825]
Description: Outer membrane receptor protein, mostly Fe transport [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-37  130.6  23.4    1.5e-37  130.6  23.4    1.9  2  TonB_dep_Rec  TonB dependent receptor
    6.8e-08   33.0   0.7    6.5e-07   29.9   0.0    2.7  2  Plug          TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   4.3      0.92   8.2e+03     395     437 ..     225     269 ..     146     314 .. 0.55
   2 !  130.6  23.4   1.6e-41   1.5e-37      38     468 ..     325     822 ..     283     824 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.92
                   ECCSSEEEEECECCEE.EE--EEEEEEEE...EEEESSSEEEEEEEE CS
  TonB_dep_Rec 395 vavggrrygdaantfr.rvpgYtlldlsl...gYklpknltlslgvn 437
                   v + +  ++++ +  + + +++++ dl +   gY  + ++  +l++n
    CCG91246.1 225 VIQTKDGRRNPGSMIQdYAGAWGTNDLEFqhgGY--KGKWDWFLSGN 269
                   3333333333332222355566666555444455..43444444332 PP

  == domain 2  score: 130.6 bits;  conditional E-value: 1.6e-41
                   EEEEEEEEECCCEECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE............EEEEEEEE...............C CS
  TonB_dep_Rec  38 ylgtnplyygdnysetdnkrlrlgydydlddnlswklslraglnYsstdgdsdynnsglgg............grsynrdn...............d 107
                    +++n+  y+  +  +dn +l   + ++ + + +w  ++  +++++  ++d+++nn+++++                                   d
    CCG91246.1 325 QTAGNSMIYTGPNPQHDNLNLVNLFATQ-ALTEEW--TIGGNAYFR--ESDFSFNNGNIANnvdqflgfnyplD------AqaldengmpipagewD 410
                   3333332233333333333333334444.88888*..999877777..55555555555554577774444430......34444556666666432 PP

                   EEE...EEEEEEEEEEEEEEEEEE.....EEEEEEEEEEE..EEE..EECCBEESCCTC........CSEEEEEEEEEEEEEEEEEEEEETTEEEEE CS
  TonB_dep_Rec 108 yyg...lgnvlaaeldlngdlwfG.....snladgldyrk..lsd..dgydaydplnps........gdasdsvdrdsyglyaqdnikltdrltltl 184
                         ++++ +a+++ ++d  +G         +++d+++  +++  +++ +  ++n++         ++     +d  gly+ d+++ t+ ++lt+
    CCG91246.1 411 --FgniNQTGAGARIQGQWDKKLGsmenyMIAGASFDWSQsiFNSgfYPAAMGANYNNItipgfpfqQQFVVPGFSDFVGLYLTDTFSPTPWFHLTG 505
                   ..2424444444444445555466554333333557777666444353444444444444444666533333334444479********7788**** PP

                   EEEEEEETTC....SSSS...........EEECCCEEEEEEEEEEEE..........CETTEEEEEEEEEEEE-STTCTTCEEEE..CCCCCEEEEC CS
  TonB_dep_Rec 185 GlRydhysvf....gkdlrag........afsrsgsafsPsvglryr..........ptddlslrasysrgfraPslgelyaggs..ngaggalsng 257
                   +lR  + + +    g     +        ++  ++ +++P++g++++           + dl+++++ys++fraP  ge+++++       ++ + g
    CCG91246.1 506 ALRDNYAQITiggfGV----DnngetvslNAAERFQQLTPAAGFTFQplmafgihdpQIKDLTFFFNYSESFRAPMPGEITGANPviPVILPIAQLG 598
                   ***4444444444433....233447889888889************888888655444599********************877777778888889 PP

                   STT---EEEEEEEEEEE..EEETTEEEEEEEEEEEEEEEEEEESSSSCSTTTCSEEEEEEEEEEEEEEEEEEEEEEETTEE.EEEEEEEEEEEEECE CS
  TonB_dep_Rec 258 npdLkPEtsknyelGlk..ldddrlnltlayFridiknfittdpdgpslgglgdfqyqNvgkarikGvElelsyrltpgWg.lglsgggytYydagd 351
                   +p L P  ++++e Gl+    ++ l++ l+++r+di n i+++++g s+ g+    +qNv+  r++GvE++l+++    ++ lg +++  ++++a++
    CCG91246.1 599 DPMLAPVLAQTFESGLRgsIKPSQLSWALSFYRTDIANNIVFQNTGHSSAGF----FQNVAAERNQGVEITLQGN----YKkLGWFAN-WSFLEATF 686
                   ******************9999****************************55....55**777************....999999999.99988877 PP

                   C...........EEECTTTTSSTTEESEEEEEEEEEECSEEEEEEEESEEEEEEECCSSEEEEECECCEEEE--EEEEEEEEEEEESSSEEEEEEEE CS
  TonB_dep_Rec 352 d...........sdaddggnplpnvPkhtanlgltYkfpaggWgaglllagarYvavggrrygdaantfrrvpgYtlldlslgYklpknltlslgvn 437
                   +           s + + gn+lpn+P++++++g++Y ++  +W  +   a+++Y +++ + ygd an +  + g+ +l+++   ++++ ++l++ ++
    CCG91246.1 687 QsslflenaispSVPVSPGNRLPNLPEQMFKAGISY-QIFPRWLIS---ADFQY-YSSRFLYGDWANVYPMLRGFSVLNIQSYVTINRYVQLFAFAT 778
                   777788888889************************.456789933...36666.567779999999999999********666888999******* PP

                   STTETCSCEEESTT..............TTTCCEB--SEEEEEEE CS
  TonB_dep_Rec 438 NLfdkryyassgyy..............glggypgpgRtfrlglr 468
                   N+f+ + ya +g+                ++  pg +  ++ g+r
    CCG91246.1 779 NVFN-EFYAGAGMIsqnvftgapnggtiVPFITPGSPFGIWGGAR 822
                   ****.5555555555555566555555556666666666666666 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   7.3e-11   6.5e-07       4     108 .]     112     223 ..     109     223 .. 0.88
   2 ?    0.3   0.2      0.11     1e+03      55      75 ..     461     486 ..     421     547 .. 0.64

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 7.3e-11
                 CCSSEEEEEEHHHHHHTTTSSHHHHHTT.STTEEEECCCCSTTSEEEEETTB-G.......GCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEES CS
        Plug   4 dtpgsvsvvtaediekqgatsladalqg.vpgvnvsssgggggassisiRGlgs.......nrvlvlvDGvpianggsgagdlssidpedierievlkG 94 
                 ++pg+ +  + e   +q   sl + +++ +++vn  + +g++  ++i+ RG+ +         + v+ DGv+i++++ +++ +++++  +++ +ev+ G
  CCG91246.1 112 NLPGNYQLAKGETWLRQEEFSLPQFMERnMASVNEVNLNGNPFLPNINYRGFAAspipgtpVGISVFYDGVRINEPFTNNVLWDYVPQLAVSTMEVVPG 210
                 66777777777777777778888888888999998788899999********889999999*************************************5 PP

                 SCHCTTSSTGSSEE CS
        Plug  95 pasalyGsdaigGv 108
                  +  +yG++++gG+
  CCG91246.1 211 -SNPIYGQNTLGGA 223
                 .555********96 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.11
                 -GGCSEEEETTEEESC.....CCCSC CS
        Plug  55 gsnrvlvlvDGvpian.....ggsga 75 
                 g+n++++++ G+p ++     g+s+ 
  CCG91246.1 461 GANYNNITIPGFPFQQqfvvpGFSDF 486
                 44777777777776665555433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 5781.71
//
Query:       CCG91247.1  [L=140]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.061   13.7   0.1      0.089   13.2   0.1    1.2  1  Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. a


Domain annotation for each model (and alignments):
>> Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     5e-06     0.089       5      71 ..       3      67 ..       1      74 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5e-06
                    HHHCHHHHHHTTT--TTSSS-EEEEEE-SS-EEEEEE-TTT--EEEEECS-SCCCTS-SSSCHHHHH CS
  Ribosomal_L18p  5 earkrRhkRirkklsgtaerprlvvfrsnrhiyaQviddvkgktlasastlekelklkstknkeaak 71
                    ++r+rR+  +r  ++ t     l+vf s    +  ++ dv++  +a+ + l+ ++  +++++ke+a+
      CCG91247.1  3 KERNRRNVALRFSIRTTF-TMFLMVFFSMATAHTSIVRDVHQFLIAHYECLDLRVS-QENQDKEEAE 67
                    689999999999999776.789*********************************9.5566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1094.06
//
Query:       CCG91248.1  [L=441]
Description: tRNA modification GTPase mnmE [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-46  157.2   0.3    7.6e-46  156.9   0.3    1.1  1  MnmE_helical  MnmE helical domain
    5.7e-39  133.0   0.0      6e-38  129.7   0.0    2.5  3  TrmE_N        GTP-binding protein TrmE N-terminus
    1.3e-20   73.6   0.0    2.6e-20   72.6   0.0    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
    5.9e-10   38.9   0.0    1.2e-09   37.8   0.0    1.5  1  FeoB_N        Ferrous iron transport protein B
     0.0001   22.2   0.0    0.00069   19.6   0.0    2.1  2  RsgA_GTPase   RsgA GTPase
    0.00032   20.8   0.1     0.0068   16.5   0.0    2.2  2  Dynamin_N     Dynamin family
     0.0053   16.4   0.0      0.017   14.8   0.0    1.7  2  Ras           Ras family
  ------ inclusion threshold ------
      0.011   16.0   0.0      0.032   14.5   0.0    1.8  2  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.028   15.0   0.0      0.062   13.8   0.0    1.6  1  AAA_18        AAA domain
      0.047   14.1   0.1       0.13   12.7   0.0    1.8  2  AAA_16        AAA ATPase domain
      0.092   12.1   0.1       0.19   11.0   0.0    1.5  2  AIG1          AIG1 family


Domain annotation for each model (and alignments):
>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.9   0.3   4.6e-49   7.6e-46       1     206 []     121     438 ..     121     438 .. 0.91

  Alignments for each domain:
  == domain 1  score: 156.9 bits;  conditional E-value: 4.6e-49
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  MnmE_helical   1 LtqaEavadlIdAeteaaakaalrqleGelskkikelrekllellaeleaaiDFpeedleelseeelaekleelkeelekllatakrgellreGik. 96 
                   LtqaE+v+d+I+A  + a+k+a +  +G ls+ + ++re+l+++++elea+iDFpeed+++   e++ +kl+e++++l++ll++a  +++l+eG++ 
    CCG91248.1 121 LTQAESVIDIIHAGGSLALKSAQALQSGGLSRVLLAIREELIDIVSELEAYIDFPEEDIQPRVGEQIIAKLSEIEKKLQNLLSSASLSRVLKEGFTi 217
                   9************************************************************************************************ PP

                   ................................................................................................. RF
  MnmE_helical  97 ................................................................................................. 96 
                                                                                                                    
    CCG91248.1 218 vlagspnvgksslfnallkenraivsphpgttrdtieaecrissflvkivdtagqrqsvdeieaegirrakeavkkgdliihlvsapdppssdpfvl 314
                   ***********************************************************99999999999999999999999999998888888888 PP

                   ................xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical  97 ................Dllkeke..ekeeeevlkiSaktgegieeLeeaike.le.leei.eeeplltnaRhkealekalealeeakealeaglpld 172
                                   D        +  ++e l++S+ tg+g+eeLee+ik+ l+ +     + ++ +n+R+  a+ek+l+a+++ +  ++++   +
    CCG91248.1 315 dellpeqrvilvaskaD-----LgiHPLNQERLAVSVVTGRGMEELEEKIKDiLTgF--FpRDFSYGINSRQAVAIEKVLTAIKRGIMGIREKRLPE 404
                   64444444444443333.....044456666679****************9955543..236779****************************77** PP

                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical 173 lvaedLrealeaLgeItGevvtedlLdeIFskFC 206
                   l++ +Lr  lea+ge++G +++ed+Ld+IF+kFC
    CCG91248.1 405 LISSELRYGLEAIGEVVGFTSSEDILDKIFQKFC 438
                   ********************************** PP

>> TrmE_N  GTP-binding protein TrmE N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.7   0.0   3.7e-41     6e-38       1     115 []       4     118 ..       4     118 .. 0.96
   2 ?   -2.7   0.0       4.3     7e+03      11      31 ..     125     145 ..     122     163 .. 0.60
   3 ?   -0.1   0.0      0.71   1.2e+03      65      89 ..     243     267 ..     203     289 .. 0.80

  Alignments for each domain:
  == domain 1  score: 129.7 bits;  conditional E-value: 3.7e-41
                 -EEEE-S-SSS-SEEEEEEESTTHHHHHHTTEEE..T--CTEEEEEEEECT..TCEEEEEEEEEEBTTCSTTSSEEEEEEEESSHHHHHHHHHHHHCTT CS
      TrmE_N   1 TIaAlatpagkgaiaiiRvsGpkaleiakklfkk..elkprkallgklvdeeekevlDevlvlvfkaprsyTgedvvElhlhGgpavvkavleallkag 97 
                 TI+A atp++ +aiai+R+sGp++l i+++l+kk    +p++++++kl+   e+e++D+v++ ++k+p+syTged+vE+++hG+p++v+++lea+ k+g
  CCG91248.1   4 TIVAPATPPAISAIAIVRMSGPESLWIINSLLKKppYWEPQRLYYKKLF--FEEELIDDVVLSYWKSPKSYTGEDMVEISCHGNPFIVEKILEACQKRG 100
                 9******************************9987778899******98..4699****************************************9999 PP

                 -EE--CTHHHHHHHHTTS CS
      TrmE_N  98 arlAepGEFtkRaflngk 115
                 arlA pGEFtkRaflngk
  CCG91248.1 101 ARLAAPGEFTKRAFLNGK 118
                 *****************8 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.3
                 S-SEEEEEEESTTHHHHHHTT CS
      TrmE_N  11 kgaiaiiRvsGpkaleiakkl 31 
                 ++ i ii   G+ al+ a++l
  CCG91248.1 125 ESVIDIIHAGGSLALKSAQAL 145
                 344445555555555444444 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.71
                 TTCSTTSSEEEEEEEESSHHHHHHH CS
      TrmE_N  65 aprsyTgedvvElhlhGgpavvkav 89 
                 +p+  T+ d++E ++  ++++vk v
  CCG91248.1 243 SPHPGTTRDTIEAECRISSFLVKIV 267
                 5777899999999999998888755 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   1.6e-23   2.6e-20       2      88 ..     217     305 ..     216     335 .. 0.80

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 1.6e-23
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS...HHHHHHHHHHHHHHHHCTSEEEEEEETTTT CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGlie...gaseekglgkaflaleeadlillvvdasee 88 
                 ++++G pNvGKS+L+nal++e +aivs +pgtTrd++e++ +++   +++vDt+G      ++ e +g+++a +a+++ dli+++v+a  +
  CCG91248.1 217 IVLAGSPNVGKSSLFNALLKEnRAIVSPHPGTTRDTIEAECRISSFLVKIVDTAG-QRqsvDEIEAEGIRRAKEAVKKGDLIIHLVSAP-D 305
                 899*****************989*******************99999********.43243445566*******************965.3 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   7.6e-13   1.2e-09       2      89 ..     216     304 ..     215     332 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 7.6e-13
                 EEEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGG CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdat 89 
                 t++l+G pnvGk++lfnal + +   v+ +pG+t +  e+++++++  v+ivD  G  +  +  e e + r   + ++ d+++++v a 
  CCG91248.1 216 TIVLAGSPNVGKSSLFNALLKENrAIVSPHPGTTRDTIEAECRISSFLVKIVDTAGQRQSVDEIEAEGIRRAKEAVKKGDLIIHLVSAP 304
                 79****************98877256899***************************988777778888888888889999999999875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.2e-07   0.00069      35     125 ..     150     240 ..     137     276 .. 0.64
   2 ?   -0.1   0.0      0.47   7.7e+02      74     101 ..     336     363 ..     316     367 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.2e-07
                  HHHHHHHHHHTT-EEEEEEE-.GGG--HHH...HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  35 ldrfLvlaeekgiepvivlnK.iDlleeee...eleelkeelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelel 125
                  l+r+L+++ e+ i++v  l   iD  ee+      e++ ++l++++      + ++  + ++l+++lk+  t+vl+G+  vGKS+L nall e+++
   CCG91248.1 150 LSRVLLAIREELIDIVSELEAyIDFPEEDIqprVGEQIIAKLSEIE-----KKLQNLLSSASLSRVLKEgFTIVLAGSPNVGKSSLFNALLKENRA 240
                  5666666666666655555431343333332211222233333332.....2333334567899999998899*****************998554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.47
                  HTTSEEEE--TTTHTTHHHHHHHCTTSE CS
  RsgA_GTPase  74 algyevllvsaktkegleelkellkdkt 101
                   l+ e l+vs+ t++g+eel+e++kd +
   CCG91248.1 336 PLNQERLAVSVVTGRGMEELEEKIKDIL 363
                  5677788999999999999999999855 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.2e-06    0.0068       1      34 [.     217     250 ..     217     257 .. 0.90
   2 ?    1.9   0.0      0.12     2e+02     103     140 ..     264     305 ..     255     329 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.2e-06
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrr 34 
                 i++ Gs + GKSS+ naLl+e+   ++p p T r
  CCG91248.1 217 IVLAGSPNVGKSSLFNALLKENRAIVSPHPGTTR 250
                 7899*************************98765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.12
                 EEEEE---B-SSSGTTS....HHHHHHHSTTEEEEEEEETTS CS
   Dynamin_N 103 ltlvDlPGldsvnkrdq....elvkeyikkadiilavtsanh 140
                 +++vD+ G  ++ ++ +    + +ke++kk d+i++++sa  
  CCG91248.1 264 VKIVDTAGQRQSVDEIEaegiRRAKEAVKKGDLIIHLVSAPD 305
                 789999998887666667788999*************99865 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     1e-05     0.017       2      60 ..     217     274 ..     216     304 .. 0.77
   2 ?   -1.7   0.0       1.2   1.9e+03     105     118 ..     321     334 ..     309     359 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1e-05
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGG CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqee 60 
                 +vl G+ +vGK+sl +   k++      +  g    t e e++ ++  ++i DTAGq +
  CCG91248.1 217 IVLAGSPNVGKSSLFNALLKENRA-IVSPHPGTTRDTIEAECRISSFLVKIVDTAGQRQ 274
                 7999*************9987643.3444455566666677777889999*******64 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
                 SEEEEEEETTTGGG CS
         Ras 105 vpivLvGnKvDlee 118
                   ++Lv+ K+Dl  
  CCG91248.1 321 QRVILVASKADLGI 334
                 5789*******964 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.9e-05     0.032       2      68 ..     217     274 ..     216     284 .. 0.73
   2 ?   -2.7   0.0       3.9   6.4e+03     106     119 ..     318     331 ..     314     332 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.9e-05
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGC CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqer 68 
                 +vl G  +vGK+sl++ +++++     ++  g +  t         e + +++++ ++i DtaGq +
  CCG91248.1 217 IVLAGSPNVGKSSLFNALLKENRAIV-SPHPGTTRDTI--------EAECRISSFLVKIVDTAGQRQ 274
                 899****************8877533.34444433222........223356778999999999975 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.9
                 CSSS-EEEEEE-TT CS
         Roc 106 agkspvilvgnkiD 119
                  +++ vilv++k+D
  CCG91248.1 318 LPEQRVILVASKAD 331
                 568899******99 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.8e-05     0.062       1      56 [.     217     294 ..     217     323 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.8e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.....................gvnlrdvakenglllevdpealdeskrldedk 56 
                 I+l+G p vGK++l ++L k++ ++                      v++ d+a ++++++e ++e +++ k+++++ 
  CCG91248.1 217 IVLAGSPNVGKSSLFNALLKENrAIvsphpgttrdtieaecrissfLVKIVDTAGQRQSVDEIEAEGIRRAKEAVKKG 294
                 89****************999756699999999999999999988888889999999999999988888888887776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.4   2.3e+03      80      88 ..     126     134 ..      87     207 .. 0.39
   2 ?   12.7   0.0   7.8e-05      0.13      11      95 ..     197     289 ..     191     370 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
      AAA_16  80 ellrqllde 88 
                 +++  +++ 
  CCG91248.1 126 SVIDIIHAG 134
                 333333322 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 7.8e-05
      AAA_16  11 qLlsalervrsgrp....elvllsGesGvGKsslvrellralekdggif..........lrgkcdqlesaipysa.laqalareellrqlldeaesael 94 
                 +L+++l++++ +r       ++l G + vGKssl ++ll+   ++++i+          ++++c+ +    ++++ +++++ +++ + ++++e   ++ 
  CCG91248.1 197 KLQNLLSSASLSRVlkegFTIVLAGSPNVGKSSLFNALLK---ENRAIVsphpgttrdtIEAECRIS----SFLVkIVDTAGQRQSVDEIEAEGIRRAK 288
                 5666666555555555555788*****************7...333444331110133344444444....6666688888888888888888544333 PP

      AAA_16  95 e 95 
                 e
  CCG91248.1 289 E 289
                 3 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.3   5.3e+03     134     156 ..      77      99 ..      50     102 .. 0.56
   2 ?   11.0   0.0   0.00012      0.19       2      59 ..     216     272 ..     215     303 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.3
                 HHHHHHHHH-HHHHHHHHHTTTS CS
        AIG1 134 ledylsksspeaLkevlkecgnR 156
                 + +   +++p  ++++l++c++R
  CCG91248.1  77 MVEISCHGNPFIVEKILEACQKR 99 
                 33444456677778888888888 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00012
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SC CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPgl 59 
                 tivl G   +GkS+  N++l+++    +  + + t+   +++ + + + ++++DT g 
  CCG91248.1 216 TIVLAGSPNVGKSSLFNALLKENRAIVS-PHPGTTRDTIEAECRISSFLVKIVDTAGQ 272
                 8*******************99986665.36777888888888999999*****9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3093.19
//
Query:       CCG91249.1  [L=342]
Description: Dihydroorotate dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-79  265.4   0.0    7.8e-79  264.9   0.0    1.2  1  DHO_dh    Dihydroorotate dehydrogenase


Domain annotation for each model (and alignments):
>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.9   0.0   4.4e-83   7.8e-79       2     293 ..      48     334 ..      47     336 .. 0.94

  Alignments for each domain:
  == domain 1  score: 264.9 bits;  conditional E-value: 4.4e-83
                 G-EEETTEEESSSEEE-TTSSTTSSSHHHHHCTTSSEEEEEEE-SS-B--S-S--EEEETTCTEEEE---S-BS-HHHHHHHHHHHHHHH.HCC.CEEE CS
      DHO_dh   2 latkvlglkfknpiglAaGfdkegeeilkllklgfgaieigsvtpkpqeGnpkPrvfrlkedrsvlNslGlnneGldavlekllkrrkeq.eekkelgi 99 
                 l+ +++g++f npiglAaGfdk+g  ++++  lgfg++eig+vtp pq+GnpkPr++rl+e++++ NslG+++eG+++v ++l+k++  + + ++++gi
  CCG91249.1  48 LEKELWGIHFSNPIGLAAGFDKNGIGLQAWESLGFGFVEIGTVTPLPQKGNPKPRLARLPESEALWNSLGFPSEGAEKVSNRLKKFLMTKgKPRMAIGI 146
                 7889*********************************************************************************98654133499*** PP

                 EEEE-TTS..S.HHHHHHHHHHHHGGGESEEEEES-SCTCCTSCCCGCHHHHHHHHHHHHHHHH...SSEEEEEE-SSSSHHHHHHHHHHHHHHTECEE CS
      DHO_dh 100 nlskakkt..enavddyvevvrkigpfadilelNvSsPntpglrdlqekeelkaillkvvkevs...kvpvlvKlaPdltdeekkdiadvllelkldgi 193
                 n++k++ t  ++av+dy++++  ++ +ad +++NvSsPnt glr+lqek+ l+ il +  + ++   k p+lvK++Pd+   ++++i+ vl e +  g+
  CCG91249.1 147 NIGKNRFTplDEAVEDYKKCFPYFKDLADFFVVNVSSPNTVGLRSLQEKKRLELILDELNS-INiipKSPILVKISPDIERRTIAEIVGVLIEKEAGGV 244
                 *******9999*****************************************987755443.33356******************************** PP

                 EE...BSEE--CTTCCGCCCCTTSSEEEEEGGGHHHHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHHHHHH CS
      DHO_dh 194 ivtNttvqrlaidlkseknvkanktGGlsGkalkdialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpkiakkikkele 292
                 +v+Nt + +         +  +  +GG+sG++l +i++++ir ++k+  +++p+IgvGGi+   Da+ekieaGA l+ v+t++v++gp   k+++++l+
  CCG91249.1 245 VVANTMLAKG--------PWGH--MGGISGRPLSKISTELIRFVKKESLGRLPVIGVGGIFNTADAVEKIEAGADLLEVFTGFVYNGPSFPKRLCQGLA 333
                 ****988776........4553..9************************************************************************98 PP

                 H CS
      DHO_dh 293 e 293
                 e
  CCG91249.1 334 E 334
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2466.84
//
Query:       CCG91250.1  [L=226]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-19   69.1   0.0    5.2e-19   68.7   0.0    1.1  1  Lactamase_B_3  Beta-lactamase superfamily domain
    4.8e-18   65.4   0.0    6.6e-18   65.0   0.0    1.2  1  Lactamase_B_2  Beta-lactamase superfamily domain
    5.7e-10   39.5   0.3    3.3e-09   37.0   0.3    1.9  1  Lactamase_B    Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   8.6e-23   5.2e-19       1     163 []       2     190 ..       2     190 .. 0.84

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 8.6e-23
  Lactamase_B_3   1 eltwlghnsflletagarilvDPfka....nlgyeppaeeaDlvlisqaledHahletlkqlaenvkvlee....................gesle 72 
                    +++++gh++f le++   +l DPf          + +  ++  +l+s+++ dH   ++  + a+++++l++                    g+s +
     CCG91250.1   2 KIHYFGHSCFGLEVGSSYLLFDPFLTqnplAHSIKVEDLHPHYILVSHGHFDHISDAAQISKANQAPILSNfeitlwlekqgvtqilpmnlGGSRR 97 
                    699*********************6542234445555699*************9776555558888888888888888888888888888877777 PP

  Lactamase_B_3  73 vggleiravatshdav..ggsergenngflleqdgltiyhlGhlahelsseelkelgrvDvvltPvggpltlgqeealelakrLkpklvlPmh 163
                    ++  +i  v+++h ++   gs  g+  gf++++ +  iy+ G+ a   +++ + e  ++D  l+P+gg +t+g +ea+ +ak+L+ k v+ +h
     CCG91250.1  98 FNFGKIHYVQAAHSSSlpDGSYGGTAGGFIVDSPEGIIYYAGDSAIISEMKIFGERFKIDMALLPIGGVFTMGIDEAIYAAKLLNCKQVMGVH 190
                    777777777777766632566778899*******************99999999999******************************998776 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   1.1e-21   6.6e-18       3     201 .]      20     191 ..      18     191 .. 0.85

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 1.1e-21
                    EEES--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSEEEE CS
  Lactamase_B_2   3 iLiDagpdlrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvheldwgesfel 98 
                    +L+D+++    q +++ +   ++++l + + +l++h+H+DH+ ++  + +  +  +p++ + ++   le++         + +++ ++++g+s ++
     CCG91250.1  20 LLFDPFLT---Q-NPLAHSI-KVEDL-HPHYILVSHGHFDHISDAAQISKANQ--APILSNFEITLWLEKQ---------GVTQILPMNLGGSRRF 98 
                    67888887...6.7777555.46664.5677*******************443..6777777777777777.........5678999********* PP

                    CSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEECTTEEEEEESS-S---HH..HHHHHCT-SEEEEE-S-SSTTHHHHHHT---STSHHHHCTTSS CS
  Lactamase_B_2  99 gdggleitatparhksgrrldrnagdtlGlriegggkrvyyigDtgyipee..igerlggadllllditayeddemirhmgHltpeeaveaaadlg 192
                    +  g +i+ ++a h+s   +++  g++ G+++++++  +yy+gD++ i+e+   ger++ +d++ll+i+         + +++ ++ea+ aa+ l+
     CCG91250.1  99 NF-G-KIHYVQAAHSSSLPDGSYGGTAGGFIVDSPEGIIYYAGDSAIISEMkiFGERFK-IDMALLPIG---------GVFTMGIDEAIYAAKLLN 182
                    85.5.7*******************************************6664667777.*********.........8999************** PP

                    SSEEEEESB CS
  Lactamase_B_2 193 akrlvliHi 201
                     k+++ +H+
     CCG91250.1 183 CKQVMGVHF 191
                    ********7 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.3   5.5e-13   3.3e-09       6     155 ..       8     145 ..       5     185 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 5.5e-13
                  SEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCHCG CS
  Lactamase_B   6 vnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagvsa 103
                  ++++ +e + + +L+D+ +++           ++++++ +++++++H+H+DHi++++ + +a ++p+  + e++ +l++ ++ +  ++  +    +s+
   CCG91250.1   8 HSCFGLEVGSSYLLFDPFLTQNPLAHS-----IKVEDLHPHYILVSHGHFDHISDAAQISKANQAPILSNFEITLWLEKQGVTQILPMNLG----GSR 96 
                  567778889999*************97.....9************************************9999999999999888888653....333 PP

                  CCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSH CS
  Lactamase_B 104 dkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallag 155
                  + +  +++  +  + + +     g  g ++g+++v++++g + ++GD   + 
   CCG91250.1  97 RFNFGKIHYVQAAHSSSLP---DGSYGGTAGGFIVDSPEGIIYYAGDSAIIS 145
                  3333333333332222222...234444555666666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1725.30
//
Query:       CCG91251.1  [L=815]
Description: Outer membrane receptor protein, mostly Fe transport [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-05   24.6   0.1    5.2e-05   23.8   0.1    1.5  1  Plug      TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   2.9e-09   5.2e-05       3     106 ..      72     173 ..      70     175 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.9e-09
                 GCCSSEEEEEEHHHHHHTTTSSH...HHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHC CS
        Plug   3 kdtpgsvsvvtaediekqgatsl...adalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpianggsgagdlssidpedierievlkGpasa 98 
                  +tp  +++v++e++++ + ++l   +d+   vp++++     g+++ + +iRGl     +++++G+ + + +s +++    +  + e i+++ Gp +a
  CCG91251.1  72 FETPRQITQVSREALNTVAPGNLmgyDDLAPLVPSLTT-MAPAGDYSVEPFIRGL---PATTFRNGMMV-GLESYGTSGVLPNFYAYENIDIVQGPVTA 165
                 689***************88887332355556999997.9999999*********...79999****65.566667777777889************** PP

                 TTSSTGSS CS
        Plug  99 lyGsdaig 106
                  yG++ ++
  CCG91251.1 166 VYGAREMA 173
                 ***99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 5615.07
//
Query:       CCG91252.1  [L=364]
Description: SAM-dependent RNA methyltransferase, TrmA family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-19   67.9   0.1    5.5e-12   45.3   0.0    3.0  3  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
    6.3e-07   29.3   2.3    1.1e-06   28.5   1.6    1.8  2  TRAM             TRAM domain
  ------ inclusion threshold ------
      0.013   15.1   0.0       0.97    9.0   0.0    2.6  3  Methyltransf_15  RNA cap guanine-N2 methyltransferase


Domain annotation for each model (and alignments):
>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0   0.00085       5.1       2      90 ..      88     177 ..      87     188 .. 0.72
   2 !   13.4   0.0   4.8e-06     0.029     178     240 ..     195     257 ..     177     267 .. 0.90
   3 !   45.3   0.0   9.2e-16   5.5e-12     287     357 .]     289     361 ..     274     361 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00085
  tRNA_U5-meth_tr   2 yeaqleekksrlkkllaefeapelevfespeeh....yrlraefrlwheeddlyyimfdqktkkkirvdefdaaselinelmkallaalkqde 90 
                      ye++le k++++++++  f+ ++   f  +  h    y  r  ++l+  +  +    +++++++ + + +  +ase+in l+k+ l++ +q  
       CCG91252.1  88 YETELEIKQAQIEEIFSCFKKNH-SFFIQNIIHgpfpYGYRNRISLHVRNGMV--GFYEKASNRIVPIRSCLIASEKINVLLKKWLDQKRQYV 177
                      88999999999999999998654.34444444434445555555655555544..45799999999******************999988755 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.8e-06
  tRNA_U5-meth_tr 178 sftqPnaavnekmleWalevtqeskgdllelycGnGnfslalarnfekvlateiakssveaaq 240
                       f q n  + ekm + + e +  + + ++e y G G f+  l +++ek+ a e    sv+ a+
       CCG91252.1 195 GFYQVNRYLLEKMRQLVDETIGREISQIIEGYSGAGFFTEYLKQRMEKIYAIEENPLSVQYAK 257
                      699**************************************************9999999886 PP

  == domain 3  score: 45.3 bits;  conditional E-value: 9.2e-16
  tRNA_U5-meth_tr 287 ifvdPPraGldketvklvkky..erilyiscnPetlkenleelsethrverlalfdqfpythhlesGvllekk 357
                       + dPP+ G+ ke++ lv+++  ++++y+scnP tlk ++++l++++ +  +   d fp t+ +e+  ll++k
       CCG91252.1 289 YLFDPPKEGISKEVISLVNSHplPKLIYVSCNPLTLKRDIQRLEKSYVLRTIRPVDLFPKTPEIECIALLTRK 361
                      478***************9873369******************************************999985 PP

>> TRAM  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   1.6   1.8e-10   1.1e-06       5      61 ..       4      57 ..       2      58 .. 0.94
   2 ?   -3.1   0.0       1.3   7.9e+03      48      58 ..     281     291 ..     264     291 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.8e-10
                XXEEEEEEEEE-.TTSEEEEEET.TEEEEETT--T..TEEEEEEEEEE-SSEEEEEE CS
        TRAM  5 GstqeVlveglsksegegiGrtdngkvvfvpgdlpgIGdfVeVkItkvkrqyLrGel 61
                G+   V++e+   + gegiG++++g ++fvp+  p   +++ V I + k++y +G++
  CCG91252.1  4 GQQSVVTIEKIV-YGGEGIGKLEEGIIIFVPFSAP--KEKLRVVIREIKKNYVKGTI 57
                77778******9.**********************..******************87 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
                 EEEEE-SSEEE CS
        TRAM  48 kItkvkrqyLr 58 
                 +I+ +k +yL+
  CCG91252.1 281 QIETAKAAYLF 291
                 78888888887 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.01        62     112     155 ..      23      66 ..       8      70 .. 0.89
   2 ?   -2.4   0.0      0.51   3.1e+03      82     113 ..      79     109 ..      77     119 .. 0.66
   3 ?    9.0   0.0   0.00016      0.97       3      70 ..     221     283 ..     219     336 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.01
  Methyltransf_15 112 klskniilfLPrnsdlnqlaaltaevlekaakvkvveikenglv 155
                      kl + ii+f P ++  ++l+ + +e+ ++  k +++ei e g+ 
       CCG91252.1  23 KLEEGIIIFVPFSAPKEKLRVVIREIKKNYVKGTIKEILETGKG 66 
                      56788*********************************998865 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.51
  Methyltransf_15  82 GGpsYkkqekfdlkkklkplkleqllkeslkl 113
                      GG  Y++  +++ + ++k++++e++++ + k 
       CCG91252.1  79 GGCAYQH-LDYETELEIKQAQIEEIFSCFKKN 109
                      7777765.457776688888888887776554 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00016
  Methyltransf_15   3 vilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklkleki 70 
                       i+  +sGaG  +  +++  ek++aie n+  ++ a+      g  ++i+++ g+v++ la + ++  
       CCG91252.1 221 QIIEGYSGAGFFTEYLKQRMEKIYAIEENPLSVQYAKA----LG-LKNIFFIEGKVEDKLADCLSQIE 283
                      578899***********************988776543....33.24455555555555555433322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2638.27
//
Query:       CCG91253.1  [L=203]
Description: putative Lead, cadmium, zinc and mercury transporting ATPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-13   49.3   1.7    6.8e-13   48.9   1.7    1.2  1  HMA        Heavy-metal-associated domain
      2e-08   34.2   0.9    3.4e-08   33.5   0.9    1.4  1  MerT       MerT mercuric transport protein
     0.0043   16.7   0.5       0.03   14.0   0.4    2.0  1  TerC       Integral membrane protein TerC family
      0.007   14.7   1.8     0.0088   14.3   1.8    1.1  1  YfhO       Bacterial membrane protein YfhO
     0.0085   16.1   0.0      0.014   15.4   0.0    1.3  1  RRM_3      RNA binding motif
  ------ inclusion threshold ------
      0.045   14.1   0.1      0.094   13.1   0.1    1.6  1  BatA       Aerotolerance regulator N-terminal
       0.11   12.4   2.5       0.83    9.6   0.3    2.3  2  RseC_MucC  Positive regulator of sigma(E), RseC/MucC
        2.4    7.8   7.1        0.3   10.7   2.8    1.7  2  DUF4131    Domain of unknown function (DUF4131)
        6.7    7.2   8.5         67    4.0   5.4    2.7  2  DUF202     Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   1.7   3.4e-16   6.8e-13       2      62 .]     132     192 ..     131     192 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 3.4e-16
         HMA   2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62 
                 + ++gm C  C+  +++ L++++gV+ vkv+ a++++ V++d+ +tk+++++ ai++agy+
  CCG91253.1 132 IPIKGMSCVTCEIVIKDHLKKVSGVQWVKVSAAANEAIVVYDVNKTKVEELLSAIKDAGYE 192
                 6799********************************************************7 PP

>> MerT  MerT mercuric transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.9   1.7e-11   3.4e-08      14     101 ..       7      94 ..       2     108 .. 0.69

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.7e-11
        MerT  14 gglaailaslcclgplvllllgvsgawignltvlepyrpifiaaalvalffawrriyrpveace.....pgevcavpqvrktykvifwlvavl 101
                 g l+aila+ cc+gpl+l +lg+s   +     +  +  +f+aa  ++l +aw+r +   + ce     + +  +     +++ ++f l a  
  CCG91253.1   7 GILSAILAASCCVGPLLLAVLGISAGSV----FFGRFHWFFLAAGGMVLVYAWWRFINEKSYCEcesykDSQRASASH-TQKRTLLFLLGATA 94 
                 899********************97543....678899****************987665544311110333333333.23344555554443 PP

>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.4   1.5e-05      0.03      41     110 ..      21      96 ..       2     150 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
        TerC  41 AlvlRillillavallelf.dlilligglfLlytavkellekr....lenklvkeekkkkkktkst...llavviqie 110
                  l+l +l i ++++ +  f +++l++gg++L+y  ++ + ek     +  +++++++++ ++t++    +l+  ++i 
  CCG91253.1  21 PLLLAVLGISAGSVFFGRFhWFFLAAGGMVLVYAWWRFINEKSycecE--SYKDSQRASASHTQKRtllFLLGATAIF 96 
                 44555566666666666676888999*************998885432..3333333333333332344444444444 PP

>> YfhO  Bacterial membrane protein YfhO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.8   4.4e-06    0.0088     309     394 ..       6     113 ..       2     130 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.4e-06
        YfhO 309 fallllllilsfllpplnlvwhgfqaPvgfpyRfsfilsflllllaaealkelkql.....................k.klkllaailllvlllliill 385
                 f++l+++l +s+++ pl l   g +a + f+ Rf++++  +  ++ ++a+ ++ +                      k +l +l++ + ++ll+l++ l
  CCG91253.1   6 FGILSAILAASCCVGPLLLAVLGISAGSVFFGRFHWFFLAAGGMVLVYAWWRFINEksycecesykdsqrasashtqKrTLLFLLGATAIFLLFLGMSL 104
                 789*********************************997665554444444333322335888888888888876663366666666666666666666 PP

        YfhO 386 lknkksynf 394
                 +++  s+++
  CCG91253.1 105 FQSFGSQSL 113
                 665444333 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     7e-06     0.014       6      60 ..     134     189 ..     130     200 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7e-06
                 EEE-SSS--HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHH.HHHHHHHHHHC CS
       RRM_3   6 lsGlnkelsredikellsklgevayvdyekgdkegevrFkedee.akkalekatea 60 
                 ++G++  ++   ik+ l+k++ v++v ++  ++e+ v ++ ++   +++l + ++a
  CCG91253.1 134 IKGMSCVTCEIVIKDHLKKVSGVQWVKVSAAANEAIVVYDVNKTkVEELLSAIKDA 189
                 678888888999***************************98865567777666665 PP

>> BatA  Aerotolerance regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   4.7e-05     0.094      11      75 ..      41     103 ..      19     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.7e-05
        BatA  11 lallllplpiillyllkrrpqevvfsslrlleevekdeealqrlkknllllLrllalallvlalA 75 
                 +++l++   ++l+y++ r  +e++    + ++ +++ + + +  k+ ll+lL   a++ll l+++
  CCG91253.1  41 WFFLAAGG-MVLVYAWWRFINEKSYCECESYKDSQRASAS-HTQKRTLLFLLGATAIFLLFLGMS 103
                 88888888.9999******************888888888.999****************99885 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3   0.00041      0.83      73     117 ..      20      62 ..       8      72 .. 0.84
   2 ?    2.5   0.1     0.064   1.3e+02      75     103 ..      95     122 ..      77     135 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00041
   RseC_MucC  73 lPllllilgallgsallgssellaalgallglvlgflivrllskr 117
                  Plll +lg+ +gs+++  + +  +++a  g+vl + + r+++++
  CCG91253.1  20 GPLLLAVLGISAGSVFF--GRFHWFFLAAGGMVLVYAWWRFINEK 62 
                 6***************4..78888888889999999999988876 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.064
   RseC_MucC  75 llllilgallgsallgssellaalgallg 103
                 ++ll+lg+ l++++ gs++l++a +  ++
  CCG91253.1  95 IFLLFLGMSLFQSF-GSQSLASATLQNVM 122
                 57788888888888.68888887766555 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.6    0.0086        17      16      46 ..      20      57 ..       5      68 .. 0.45
   2 ?   10.7   2.8   0.00015       0.3       5      50 ..      39     106 ..      35     124 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0086
     DUF4131 16 lllllllllrr.......rprrrvllllllllllallg 46
                  lll++l  +       r ++ +l++ +++l+ a+  
  CCG91253.1 20 GPLLLAVLGISagsvffgRFHWFFLAAGGMVLVYAWWR 57
                33333333222333222255555555555555554443 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00015
     DUF4131   5 lalvllalllllllllllllrr......................rprrrvllllllllllallgfalr 50 
                 + +++la+++++l+++++++ +                      +++  +ll++++++ll+l++ +++
  CCG91253.1  39 FHWFFLAAGGMVLVYAWWRFINeksycecesykdsqrasashtqKRTLLFLLGATAIFLLFLGMSLFQ 106
                 7899**************9999*****************99987777777888888888888776655 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   5.4     0.034        67      44      64 ..      37      60 ..       6      63 .. 0.77
   2 ?    3.6   0.0     0.046        92      16      32 ..      93     109 ..      78     164 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.034
      DUF202 44 g...lilivlgiltllvglvrylr 64
                g   ++++++g ++l+++++r++ 
  CCG91253.1 37 GrfhWFFLAAGGMVLVYAWWRFIN 60
                355589***************985 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.046
      DUF202  16 tslalialglallrffl 32 
                 t++ l++lg  l+++f 
  CCG91253.1  93 TAIFLLFLGMSLFQSFG 109
                 67777777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1033  (0.0576162); expected 358.6 (0.02)
Passed bias filter:                      682  (0.0380389); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1519.12
//
Query:       CCG91254.1  [L=74]
Description: hypothetical protein MFUM_1010078 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 564.18
//
Query:       CCG91255.1  [L=91]
Description: hypothetical protein MFUM_1010079 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   14.7   0.3      0.039   13.7   0.1    1.5  2  Hormone_1  Somatotropin hormone family
      0.026   14.4   0.3       0.13   12.0   0.1    1.8  2  DUF3540    Protein of unknown function (DUF3540)
      0.032   14.4   0.3      0.036   14.3   0.3    1.1  1  Med30      Mediator complex subunit 30
       0.05   13.0   0.2       0.05   13.0   0.2    1.0  1  FAM76      FAM76 protein


Domain annotation for each model (and alignments):
>> Hormone_1  Somatotropin hormone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.41   1.8e+03     135     152 ..       4      21 ..       1      24 [. 0.75
   2 ?   13.7   0.1   8.7e-06     0.039     115     152 ..      40      77 ..      33      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.41
                 GHHHHHHHHHHHHHHHH- CS
   Hormone_1 135 eklkeLlegierilskve 152
                 + l++L+  ++r++++v+
  CCG91255.1   4 DRLNQLKIILQRVFRRVQ 21 
                 667888888888888887 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 8.7e-06
                 ...GGGSSS------TTTGGGHHHHHHHHHHHHHHHH- CS
   Hormone_1 115 elssmkevsetilskakeieeklkeLlegierilskve 152
                  l s+ +  e+ils+akeie+++  L + i+++++ v 
  CCG91255.1  40 RLHSRAQRAEEILSRAKEIEQEILGLNQKIRQLFQSVS 77 
                 478899999*************************9887 PP

>> DUF3540  Protein of unknown function (DUF3540)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     3e-05      0.13     142     180 ..       7      45 ..       2      49 .. 0.85
   2 ?    1.1   0.0     0.067     3e+02     126     157 ..      47      78 ..      43      83 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
     DUF3540 142 drltqrakrsfRrveeveqvragridyqaeeslrlhakn 180
                 ++l+  ++r+fRrv++ + v agr+     +++rlh++ 
  CCG91255.1   7 NQLKIILQRVFRRVQGSDLVLAGRLVDYELRAMRLHSRA 45 
                 56677899****************9888889999*9986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.067
     DUF3540 126 kvekvrlvaksvesvvdrltqrakrsfRrvee 157
                 ++e++   ak++e+ +  l q+++++f+ v++
  CCG91255.1  47 RAEEILSRAKEIEQEILGLNQKIRQLFQSVSR 78 
                 56677778889999999999999999998876 PP

>> Med30  Mediator complex subunit 30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.3   8.1e-06     0.036      57     134 ..       2      76 ..       1      86 [. 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.1e-06
       Med30  57 lkvlfkkLrliYekckencqgleevpiesLipyvdeekskreerkkseevkqlkeerkelleklkeknkqLkeimdql 134
                 l+ + ++L++i +++ +++qg + v    L+ y+      +  ++ ++ ++++ ++ ke+ +++   n++++++ + +
  CCG91255.1   2 LRDRLNQLKIILQRVFRRVQGSDLVLAGRLVDYELRA---MRLHSRAQRAEEILSRAKEIEQEILGLNQKIRQLFQSV 76 
                 778899***************************9744...44445567778888888888888888888888876654 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.1e-05      0.05     250     296 ..      34      80 ..       2      83 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
       FAM76 250 telkaellekekelreklkelekeakekieklekkirellkevaels 296
                  el+a  l+++++  e + ++ ke++++i  l++kir+l + v++ls
  CCG91255.1  34 YELRAMRLHSRAQRAEEILSRAKEIEQEILGLNQKIRQLFQSVSRLS 80 
                 489999*************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 612.57
//
Query:       CCG91256.1  [L=169]
Description: hypothetical protein MFUM_1010080 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1307.94
//
Query:       CCG91257.1  [L=41]
Description: hypothetical protein MFUM_1010081 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 306.73
//
Query:       CCG91258.1  [L=69]
Description: hypothetical protein MFUM_1010082 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   10.6   0.0       0.13   10.6   0.0    1.0  1  Mem_trans  Membrane transport protein


Domain annotation for each model (and alignments):
>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.5e-06      0.13     277     331 ..       4      61 ..       1      68 [. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.5e-06
   Mem_trans 277 isilgdaglpmalfslGlfLalqpkk...iacgnsvatfalavRlilgPlvmlvavla 331
                 + i+++    +al++lG+fL ++ +    +++g + +   + +R+  +P ++ v++++
  CCG91258.1   4 LGIISNDPHKIALLVLGAFLLNKNMHfsfSKVGRNQNNCVIWARFNFMPHLVRVIATT 61 
                 56777777779**********99876222456666666669********999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 549.32
//
Query:       CCG91259.1  [L=108]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-23   80.4   1.7    1.2e-22   80.1   1.7    1.1  1  Trns_repr_metal  Metal-sensitive transcriptional repressor
      0.006   16.3   0.1     0.0064   16.2   0.1    1.1  1  CmcI             Cephalosporin hydroxylase
  ------ inclusion threshold ------
      0.026   14.9   0.1       0.28   11.5   0.0    2.1  2  TetR_C_22        Tetracyclin repressor-like, C-terminal domai
       0.03   14.3   0.0      0.048   13.7   0.0    1.4  1  HTH_29           Winged helix-turn helix


Domain annotation for each model (and alignments):
>> Trns_repr_metal  Metal-sensitive transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   1.7   2.6e-26   1.2e-22       2      72 ..      26     102 ..      25     106 .. 0.88

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 2.6e-26
                      HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH......HHHHHHH CS
  Trns_repr_metal   2 kkkllnrLkrieGQvrgiqrmieedryCidiltQlaAvrsalnkvglelledhlkhcvaeaiee......ekieeli 72 
                      + ++++rLkr+eG++++i+ m+ee++ C di++Ql+Av+sa+ +++++l++dh++hc+++a++e      e i+e++
       CCG91259.1  26 HPDIIKRLKRAEGHLKSIILMMEEGHGCLDIAQQLQAVESAVSNAKKALVHDHIDHCLEHAVREgtqgadEIIREFK 102
                      6799**********************************************************888945544455544 PP

>> CmcI  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.4e-06    0.0064      84     156 ..      14      85 ..       8     108 .] 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.4e-06
        CmcI  84 asrieliegssvdpeiveqvkslakekekvlvilDsdHthehvlaeLeayaplvsaGsYivveDtviedlpes 156
                  +ri  +++    p+i+++ k+ + + + +++++   H +  + ++L+a ++ vs+ + ++v D + ++  e+
  CCG91259.1  14 VDRILDMTTHTSHPDIIKRLKRAEGHLKSIILMMEEGHGCLDIAQQLQAVESAVSNAKKALVHDHI-DHCLEH 85 
                 578888999999***************************************************975.444443 PP

>> TetR_C_22  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.063   2.8e+02      66     106 ..      37      75 ..      28      78 .. 0.71
   2 ?   11.5   0.0   6.3e-05      0.28      76     105 ..      76     105 ..      73     108 .] 0.86

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.063
   TetR_C_22  66 eelsrtaavlveladallrlaiakdeeedealideaKrmlr 106
                 e + + + +++e  +++l+ a+  + +  e+ ++ aK++l 
  CCG91259.1  37 EGHLKSIILMMEEGHGCLDIAQ--QLQAVESAVSNAKKALV 75 
                 5556667799999999999665..55566677788877765 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.3e-05
   TetR_C_22  76 veladallrlaiakdeeedealideaKrml 105
                  + +d +l++a+++  ++++++i+e+K ++
  CCG91259.1  76 HDHIDHCLEHAVREGTQGADEIIREFKAIT 105
                 566799*********************876 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.1e-05     0.048       3      42 ..      42      80 ..      41      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
      HTH_29  3 qallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGla 42
                 ++l+++eG++ + +iA++l+  ++ v +++k+ + + ++
  CCG91259.1 42 SIILMMEEGHG-CLDIAQQLQAVESAVSNAKKALVHDHID 80
                69********9.********************98887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 726.69
//
Query:       CCG91260.1  [L=374]
Description: High-affinity nickel-transporter [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-40  137.2   7.5    2.7e-39  135.2   7.5    1.7  1  NicO             High-affinity nickel-transport protein
      8e-07   29.2   2.6      8e-07   29.2   2.6    2.6  2  DsbD_2           Cytochrome C biogenesis protein transmembran
    0.00062   19.5   0.9    0.00062   19.5   0.9    2.3  2  TauE             Sulfite exporter TauE/SafE
    0.00087   19.4   2.2    0.00087   19.4   2.2    2.0  2  Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
      0.005   16.8   1.5      0.005   16.8   1.5    1.9  2  DsbD             Cytochrome C biogenesis protein transmembran
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.22   11.3   0.0    1.4  1  CDC48_2          Cell division protein 48 (CDC48), domain 2


Domain annotation for each model (and alignments):
>> NicO  High-affinity nickel-transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   7.5     9e-43   2.7e-39       1     268 [.      15     364 ..      15     370 .. 0.91

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 9e-43
        NicO   1 llvliglsflyGvrHAvdagHgkaiirklmqagktalkrGillslgsslvvvlvavllvvaavlvlrltslsetgaaigteiasFllvilllnllllrk 99 
                 ++ +i++++l+G +H++++gH+k++++++++a + +l+++ill+l++++++++v ++++++ + + +  + s++++++++++as++l+i+++ ++++r+
  CCG91260.1  15 AWLFIPSAILLGGLHGLEPGHSKTMMAAFIVAIRGTLTQAILLGLAATISHTAVIWVIALGGMYFGQ--HWSAKTSEPYMQVASAVLIIGVAVWMMWRT 111
                 599**************************************************************99..9***************************** PP

        NicO 100 lrklfrkler...lgrapaaeleaalakr...................................................................... 125
                 +r++++  ++     + ++ e++++ +++                                                                      
  CCG91260.1 112 WRQQRACFHNyrnDHNHQNDEVKYIDTGHgvvrlevfedgvpprfrlffdgkhghvwtadqvrvetersdgsrqtftflqrdgfveseqeipephefva 210
                 **997766661113334444555566666********************************************************************** PP

        NicO 126 ........gllsrilgklfrlitkswhmypvgflfglGfdtateiallaidpsealkgdsfdsilalpalfavGlrlcdgadivlmfaalnwaflggrk 216
                         ++++  ++ + r++ +++  +  g +  +  +++ +  ++a+d+ ++++ ++++  ++  + ++ Gl++c++ ++vl+++++ +    g++
  CCG91260.1 211 rlrlghehHSHDYDVEFVDRDHPHHTIKDYEGLDLSAPGYQDQHELVHANDIRHRFANQEVTTGQIIVFGLTGGLIPCPASITVLLLCLQLKKIALGAT 309
                 ***9876555555555477999999999999**999999999999****************************************************** PP

        NicO 217 lvyamsitgtsitvalliglivtlklvakkfalsgslwaaiisle...leivGav 268
                 lv+++s++++ ++v  ++ ++++++ v+k++ ++g++++++++++   + +vG++
  CCG91260.1 310 LVLSFSVGLALTMVISGALAALSVRYVSKRWCGFGKFARKAPYFSsalILLVGLY 364
                 *******************************************996655666655 PP

>> DsbD_2  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   5.7     0.051   1.5e+02      24      92 ..      43     115 ..      22     130 .. 0.61
   2 !   29.2   2.6   2.7e-10     8e-07     116     186 ..     271     341 ..     253     364 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.051
      DsbD_2  24 lslskpkralalllynlGRilsYallGalvgllgsvlqlagel....eglrallgvllgllllllglklllkk 92 
                 +  + + + ++ +l  l+ ++s +++  +++l g  + +  ++    ++++ + +vl++ ++++++++ ++++
  CCG91260.1  43 FIVAIRGTLTQAILLGLAATISHTAVIWVIALGGMYFGQHWSAktsePYMQVASAVLIIGVAVWMMWRTWRQQ 115
                 4444444444566666666667776666666666666555444222356777777777777777776666544 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 2.7e-10
      DsbD_2 116 kslasalllGllnGllpCglvysalllalasgsaleGalvmlaFgLGTlpalllfglllgllskklrkkll 186
                  ++ +++++Gl  Gl+pC+   ++lll+l  ++++ Ga + l F++G  +++++ g+l++l  + ++k++ 
  CCG91260.1 271 VTTGQIIVFGLTGGLIPCPASITVLLLCLQLKKIALGATLVLSFSVGLALTMVISGALAALSVRYVSKRWC 341
                 68899******************************************************999888888875 PP

>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.9   2.1e-07   0.00062      32     111 ..      33     111 ..      11     141 .. 0.54
   2 ?    2.7   7.0     0.027        80      77     143 ..     304     369 ..     273     372 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.1e-07
        TauE  32 ppav.avatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpsellkllfgvlllllallmllrk 111
                 p +  + ++++++++ ++l++a+         ++ + ++++ +l G ++G   ++ +++++++++ +vl++ +a++m++r 
  CCG91260.1  33 PGHSkTMMAAFIVAIRGTLTQAILLGLA--ATISHTAVIWVIALGGMYFGQHWSAKTSEPYMQVASAVLIIGVAVWMMWRT 111
                 3333333344444444444444433332..333444444444555666666666666666666666666666666666644 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.027
        TauE  77 allGallllllpse.llkllfgvlllllallmllrkkrsrakgrerrptaillvligglvGllsGllG 143
                 + lGa l+l+++   +l+++++ +l++l+++ + ++    + g+  r+ + ++ ++ +lvGl+ G+ G
  CCG91260.1 304 IALGATLVLSFSVGlALTMVISGALAALSVRYVSKRW--CGFGKFARKAPYFSSALILLVGLYVGYQG 369
                 6789999998887767999999999999999987665..33344556666666666678999999866 PP

>> Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   2.2   2.9e-07   0.00087       8      78 ..      48     118 ..      47     142 .. 0.81
   2 ?   -0.0   0.7      0.25   7.4e+02      92     122 ..     308     338 ..     284     370 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.9e-07
  Abhydrolase_9_N   8 RtwlfqgvvsGlsaaiGYglGvllawlvrrllrlpepsrrvrr.rlrlalavvalvvllvalvlaarwQrel 78 
                      R+ l+q+++ Gl+a+i +++ + + +l   +  ++ +s+++++  +++a av+++ v+++++++ +r+Qr  
       CCG91260.1  48 RGTLTQAILLGLAATISHTAVIWVIALGGMYF-GQHWSAKTSEpYMQVASAVLIIGVAVWMMWRTWRQQRAC 118
                      8899**************98777777776666.899999998846667777777788888889999999865 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.25
  Abhydrolase_9_N  92 yllvllvallvfalllllgrllralvrllar 122
                      ++lvl  ++ +++ +++ g l    vr++++
       CCG91260.1 308 ATLVLSFSVGLALTMVISGALAALSVRYVSK 338
                      4455555555555556666666666666663 PP

>> DsbD  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.4       0.4   1.2e+03     156     209 ..      53     105 ..      33     109 .. 0.51
   2 !   16.8   1.5   1.7e-06     0.005     119     210 ..     273     364 ..     249     366 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.4
        DsbD 156 kgallllvyvlGlaipfllvglllellkkklkslkkyskaveiaggvllvllGv 209
                 +++ll l+ ++  ++++ +++l    +  +  s k    ++++a++vl++ + v
  CCG91260.1  53 QAILLGLAATISHTAVIWVIALGGMYFG-QHWSAKTSEPYMQVASAVLIIGVAV 105
                 4444444444444444444443333332.3334444555666666666666555 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.7e-06
        DsbD 119 vlgalllGltFalgwsPCigPvlasvlalaaskeslakgallllvyvlGlaipfllvgll....lellkkklkslkkyskaveiaggvllvllGvl 210
                 + + +++Glt +l+  PC + +  +vl+l  + +++a+ga+l+l +++Gla+ +++ g l    +  + k+   + k+ ++    ++ l++l+G++
  CCG91260.1 273 TGQIIVFGLTGGLI--PCPASI--TVLLLCLQLKKIALGATLVLSFSVGLALTMVISGALaalsVRYVSKRWCGFGKFARKAPYFSSALILLVGLY 364
                 44556667666554..775555..677777788889******************976655100055566777789999999999**********97 PP

>> CDC48_2  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.4e-05      0.22       9      34 ..     261     286 ..     258     288 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.4e-05
                 HHHCCCTTEEE-TTEEEEECCTCCCE CS
     CDC48_2   9 ylkrqFlgrpvtkGdlvvfefkgqei 34 
                  ++++F ++ vt G+++vf   g+ i
  CCG91260.1 261 DIRHRFANQEVTTGQIIVFGLTGGLI 286
                 689****************9888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2695.31
//
Query:       CCG91261.1  [L=66]
Description: hypothetical protein MFUM_1010085 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       178  (0.00992805); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 481.25
//
Query:       CCG91262.1  [L=579]
Description: Oxidoreductase, molybdopterin-binding [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-33  114.2   0.0    8.5e-33  113.4   0.0    1.3  1  Oxidored_molyb  Oxidoreductase molybdopterin binding domain
    1.1e-19   70.8  13.5    1.1e-19   70.8  13.5    1.7  2  Ni_hydr_CYTB    Prokaryotic cytochrome b561
     0.0015   19.0   4.0     0.0015   19.0   4.0    3.4  3  DUF4405         Domain of unknown function (DUF4405)


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.0   1.4e-36   8.5e-33      11     165 ..     419     554 ..     410     560 .. 0.93

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 1.4e-36
                     C-EEEEESTCSSEEEEEHHHHHHC-EEEEEEEEE-TTTTHHHHCHH--SS----TTSEEEEEEEEEEHHHHHHHTTB-ETT..EEEEEEEEE-TC CS
  Oxidored_molyb  11 kwrlevdglvekplslslddLkalpavevtatlqCagnrrkelnkkkvkglqwgagavsnaeWtGvrlrdvLekagvkkpearhvvfegadeele 105
                     ++rl+++glv++p+++s+++L+a+p++e+++ l C                +w    +++a+W Gv++r vL+ + ++ ++ r++vf++  e  e
      CCG91262.1 419 SYRLSISGLVDHPCEFSMEELRAMPKQEQITNLYCIQ--------------GW----SGIAKWGGVPMRYVLKVVHPR-SDGRYAVFYSFGEGGE 494
                     7************************************..............8*....9*******************7.9*********987778 PP

                     CTEEEEEEEHHHHCTTT-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTEEEEEEES CS
  Oxidored_molyb 106 eskygasiplekaleddvlLAyemngepLppdhGyPlRlvvpglvgarsvKwlkrievsd 165
                      + y+    le++ ++ ++LAyemng pL++ hG+PlRl++p+ +g+++vKw++ ie+++
      CCG91262.1 495 GGIYYDVHTLENMQHHLTILAYEMNGSPLSVLHGAPLRLICPNELGFKQVKWIRAIEFVS 554
                     888999999999997779***************************************865 PP

>> Ni_hydr_CYTB  Prokaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8  13.5   1.8e-23   1.1e-19       2     182 .]      99     327 ..      98     327 .. 0.92
   2 ?   -2.9   0.2      0.74   4.4e+03      55      64 ..     342     351 ..     335     378 .. 0.53

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 1.8e-23
                   ----TTHHHHHHHHHHHHHHHHHHHHHS------S-GGG-..........................................HHHHHHHHHHHHHHH CS
  Ni_hydr_CYTB   2 yslvarllHWlnallvvllllsgllianlhprlywgdsgk..........................................aralHklaGlvllal 56 
                   +++++r+ H +n ++ + ++ sg+ i  +hprlyw    +                                           r +H++++l++l+ 
    CCG91262.1  99 FPWWLRWQHYFNLFFLMFIIRSGIQILADHPRLYWNVHCTpgtewfrfqkevpkdriwtakddsvtipgwlglpgirhsiglSRWWHFSFALFWLGN 195
                   789*********************************8777*****************************************99999*********** PP

                   H.HHHHHHH....------------STTTSSSSS----------------TT....THHHHHHHHHHHHHHHHHHHTHHHHHHHH...HTS-THHHH CS
  Ni_hydr_CYTB  57 l.lfrllwl....kkakkpspriifrqikrdltlllrgrkpeagknnplqkl....vhlllyvllvvliltGlllsfaatagfplllddkggaqlar 144
                     +f+ll+     +k++ p ++++f ++ + + ++l+ + p+ ++++  + +    ++l ++++ +++++tGll+++a  a +   l     +q+ar
    CCG91262.1 196 GiIFYLLLFltpqWKRIVPLSWDVFPNALSVILQYLSLQFPSNEGWTRYNSAqqlaYFLTVFLAAPLAVVTGLLQAPAL-ANRLTRLSRIINRQVAR 291
                   978888888*************************9999999988776666666668*******************9863.34444488999****** PP

                   HHH.HHHHHHHHHHHHHHHHHHHHHH---XXXXXXXXX CS
  Ni_hydr_CYTB 145 elHellaaallafvvlHiaaallhgpvkkdtlrrMitg 182
                   ++H+l+  ++l+f v+H+++++l g+     ++rM+ g
    CCG91262.1 292 SIHFLVLCWFLIFTVIHVSLVFLTGASA--NINRMFAG 327
                   *************************987..99999976 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.74
                   HHHHHHHHHH CS
  Ni_hydr_CYTB  55 alllfrllwl 64 
                   a l++ l+wl
    CCG91262.1 342 AMLILILAWL 351
                   2224444444 PP

>> DUF4405  Domain of unknown function (DUF4405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   3.9       2.6   1.6e+04      41      58 ..     100     117 ..      50     119 .. 0.50
   2 ?   -3.2   0.4       2.3   1.4e+04      41      53 ..     179     191 ..     162     198 .. 0.60
   3 !   19.0   4.0   2.5e-07    0.0015       4      64 ..     254     311 ..     251     313 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.6
     DUF4405  41 hqwrdiHeilgllflilv 58 
                  +w  + +++ l fl ++
  CCG91262.1 100 PWWLRWQHYFNLFFLMFI 117
                 346677777777777666 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.3
     DUF4405  41 hqwrdiHeilgll 53 
                 +  r +H+ ++l 
  CCG91262.1 179 GLSRWWHFSFALF 191
                 4455666666554 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 2.5e-07
     DUF4405   4 lllllsflvlaiSGillsfavlpsgrgaywa.flgl.skhqwrdiHeilgllflilvvlHlgl 64 
                 l+++l+  +++++G+l   a+ +       + +  + +++ +r iH+++  +fli+ v+H+ l
  CCG91262.1 254 LTVFLAAPLAVVTGLLQAPALANRL-----TrLSRIiNRQVARSIHFLVLCWFLIFTVIHVSL 311
                 789999************9965533.....2322335***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4371.04
//
Query:       CCG91263.1  [L=136]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.5   9.5       0.25   11.5   9.6    1.5  1  DUF3792   Protein of unknown function (DUF3792)


Domain annotation for each model (and alignments):
>> DUF3792  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   9.6   1.4e-05      0.25      36      85 ..      87     133 ..      72     136 .] 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.4e-05
     DUF3792  36 vlsililiililsvfigGflagkkakkkgllnGllvGllyflillllsll 85 
                  ls+ +l ++i s+f gG l+    +k g+l+Gll+ ll+f + +l+sl+
  CCG91263.1  87 FLSLPLLGVYIFSSFSGGHLC--WHQKTGFLSGLLLSLLIFGV-FLISLI 133
                 567778899************..999*****************.999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 924.52
//
Query:       CCG91264.1  [L=191]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-41  140.3   0.6    4.3e-41  139.7   0.6    1.3  1  Macro     Macro domain


Domain annotation for each model (and alignments):
>> Macro  Macro domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   0.6   2.4e-45   4.3e-41       1     118 []      26     138 ..      26     138 .. 0.98

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 2.4e-45
                 EEEEETTSS-CSHHHHHHHHHHHHHHHHHHHHHHHHHHS--TTSEEEEE-TTSSSSEEEEEESE-TTTSTSTTHHHHHHHHHHHHHHHHHHTT-SEEEE CS
       Macro   1 VnAaNsrllggggvagaihraagkalkeeckelekkqggcllGeavvtpaynlpakyvihtvgplftsskskeeeellakayknalelaeekgiksvaf 99 
                 VnAaNsrl+ gggv+gaihraag++l e+c +l    +gc++G+a+vtp++nl+ak++ih+vgp+++ ++  +e++lla++y +al  a+e ++k+vaf
  CCG91264.1  26 VNAANSRLMKGGGVDGAIHRAAGPKLAEACAKL----NGCPTGHAKVTPGFNLKAKWIIHAVGPVWK-GGVANEKALLASCYHQALLRAKEVEAKTVAF 119
                 9********************************....89***************************8.8999*************************** PP

                 E-TTSSTTSBTHHHHHHHH CS
       Macro 100 PaistGifgvpweeaarva 118
                 PaistG +g+p + aa++a
  CCG91264.1 120 PAISTGAYGFPSDLAAKIA 138
                 ****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1351.34
//
Query:       CCG91265.1  [L=231]
Description: SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-14   53.4   0.0    3.5e-14   52.9   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    2.7e-14   53.7   0.0    4.6e-14   53.0   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    1.5e-13   51.3   0.0    2.4e-13   50.6   0.0    1.3  1  Methyltransf_25  Methyltransferase domain
      3e-13   50.2   0.0    4.8e-13   49.6   0.0    1.3  1  Methyltransf_11  Methyltransferase domain
      3e-11   43.1   0.0    3.9e-11   42.7   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    1.4e-08   34.7   0.0    2.1e-08   34.2   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    1.6e-08   34.5   0.0    4.1e-08   33.2   0.0    1.6  2  Methyltransf_23  Methyltransferase domain
    1.4e-07   31.5   0.0    1.7e-07   31.2   0.0    1.1  1  Met_10           Met-10+ like-protein
    3.5e-06   26.3   0.0    4.9e-06   25.8   0.0    1.1  1  Fibrillarin      Fibrillarin
    7.4e-06   25.1   0.0    9.7e-06   24.7   0.0    1.1  1  Methyltransf_9   Protein of unknown function (DUF1698)
    1.2e-05   24.5   0.0    1.9e-05   23.8   0.0    1.2  1  RrnaAD           Ribosomal RNA adenine dimethylase
      6e-05   23.2   0.0    8.6e-05   22.7   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase
    0.00013   21.3   0.0    0.00022   20.6   0.0    1.4  1  CMAS             Mycolic acid cyclopropane synthetase
    0.00014   21.7   0.0    0.00028   20.7   0.0    1.5  2  GCD14            tRNA methyltransferase complex GCD14 subunit
    0.00029   20.9   0.0    0.00051   20.1   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
    0.00048   19.3   0.0    0.00065   18.9   0.0    1.2  1  DREV             DREV methyltransferase
     0.0019   17.8   0.0     0.0025   17.4   0.0    1.2  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.039   13.9   0.0      0.059   13.3   0.0    1.2  1  Methyltransf_18  Methyltransferase domain
      0.048   13.3   0.0      0.073   12.7   0.0    1.2  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
       0.05   12.9   0.0       0.12   11.7   0.0    1.6  1  Methyltransf_2   O-methyltransferase domain
      0.083   12.7   0.0       0.11   12.3   0.0    1.2  1  PRMT5            PRMT5 arginine-N-methyltransferase
      0.087   12.3   0.0       0.23   10.9   0.0    1.7  2  Methyltransf_4   Putative methyltransferase
       0.11   11.6   0.0       0.13   11.4   0.0    1.1  1  TRM              N2,N2-dimethylguanosine tRNA methyltransfera
       0.13   12.0   0.0       0.15   11.7   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   4.6e-17   3.5e-14       2     113 ..      74     183 ..      73     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.6e-17
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkile 95 
                      + g++v DlG+GtG++t ++ + +g +++v+ +D ++ ++ + +++ ++++l+nv ++    ++ +  l ++++D+i+  evl+++ +  ++l+
       CCG91265.1  74 KPGYTVADLGAGTGYFTRRFSKAVGNEGKVYALDSEPAMVDYLQKEVKNKNLTNVIVKLVKPNNPD--LGKASIDIIFICEVLHHIDNRIEYLK 165
                      6789*******************************************************9999977..7889********************** PP

  Methyltransf_31  96 eiervlkpggilliedpr 113
                      +++  lk+gg +++ d+ 
       CCG91265.1 166 KLSLSLKNGGKIALIDFY 183
                      ************999987 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   6.2e-17   4.6e-14       2      99 .]      81     177 ..      80     177 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 6.2e-17
  Methyltransf_12   2 eiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      ++G+GtG ++r++ ++   + +++++D  p+++ d  +k  k++n+ n  v+l + +  dl + +s D++++++vlhh++++ e+l+++   Lk
       CCG91265.1  81 DLGAGTGYFTRRFSKAVgNEGKVYALDSEPAMV-DYLQKEVKNKNLTNVIVKLVKPNNPDLGK-ASIDIIFICEVLHHIDNRIEYLKKLSLSLK 172
                      89***************99**************.***********************888755.6***************************** PP

  Methyltransf_12  95 pgGrl 99 
                      +gG++
       CCG91265.1 173 NGGKI 177
                      ***86 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   3.2e-16   2.4e-13       1      97 []      79     175 ..      79     175 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 3.2e-16
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      v dlG+GtG +t++++k++g ++kv+++D  ++m+++ ++++++++l nv +   + ++ ++ ++s+D+++++ +lhh++  ++ ++lk+++  
       CCG91265.1  79 VADLGAGTGYFTRRFSKAVGnEGKVYALDSEPAMVDYLQKEVKNKNLtNVIVKLVKPNNPDLGKASIDIIFICEVLHHID--NRIEYLKKLSLS 170
                      78*****************65***********************99999999999999999***********888***98..5679******** PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      Lk+gG
       CCG91265.1 171 LKNGG 175
                      ****9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   6.4e-16   4.8e-13       2      95 ..      81     178 ..      80     179 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 6.4e-16
                      EET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      d+G+GtG++++ + k++   ++v+++D  ++m+++ ++++++++l +v +      +  + ++s+D++++ evlhh++++ ++lk++   Lk+g
       CCG91265.1  81 DLGAGTGYFTRRFSKAVgneGKVYALDSEPAMVDYLQKEVKNKNLtNVIVKLVKPNNPDLGKASIDIIFICEVLHHIDNRIEYLKKLSLSLKNG 174
                      9*************777799**********************99865444445555667*********************************** PP

                      EEEE CS
  Methyltransf_11  92 Gllv 95 
                      G+++
       CCG91265.1 175 GKIA 178
                      *987 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   5.2e-14   3.9e-11      23     154 ..      49     182 ..      28     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 5.2e-14
                      HHHHHHTTTHHHHHH..HHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSST..EEEEE--TTT-TT CS
  Ubie_methyltran  23 mndvlslgihrlWkk..fveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkin..ieflqanaeeLpf 112
                        +++  +  ++W+k   +++    k+g +v D+ +Gtg ++ ++s++vg++gkv  lD ++ m++  +k +k++  +n  +++++ n  +L  
       CCG91265.1  49 YAQLFESKERDKWQKpdRIIESLHIKPGYTVADLGAGTGYFTRRFSKAVGNEGKVYALDSEPAMVDYLQKEVKNKNLTNviVKLVKPNNPDL-- 140
                      555666678899*988899999****************************************************999961156777776666.. PP

                      S-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 113 eddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       + s D++ +   l  + ++ + Lk++   lk GG++  ++f
       CCG91265.1 141 GKASIDIIFICEVLHHIDNRIEYLKKLSLSLKNGGKIALIDF 182
                      6789*********************************99988 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   2.8e-11   2.1e-08      65     132 ..      67     134 ..      63     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 2.8e-11
                 HHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES- CS
        PCMT  65 alellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgD 132
                 ++e l++k+g  v ++G+G+Gy t  +++ vg++g+v +++  + +v+  ++++k+++l+nviv+   
  CCG91265.1  67 IIESLHIKPGYTVADLGAGTGYFTRRFSKAVGNEGKVYALDSEPAMVDYLQKEVKNKNLTNVIVKLVK 134
                 68999**********************************************************98765 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.4   1.8e+03     138     156 ..      36      54 ..      22      57 .. 0.77
   2 !   33.2   0.0   5.5e-11   4.1e-08      13     120 ..      68     182 ..      47     218 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.4
  Methyltransf_23 138 pagrhisffsarslkelle 156
                      ++g h sf++ +++++l+e
       CCG91265.1  36 KHGYHHSFHDVHHYAQLFE 54 
                      4456889999999999987 PP

  == domain 2  score: 33.2 bits;  conditional E-value: 5.5e-11
  Methyltransf_23  13 lerllpklraggrvLdiGcGtGillevlren.gf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqg......kfdlIvlrevlehvpd 97 
                      +e l    ++g  v d+G+GtG++++ +++  g   +v++ D  p++v+ ++k  k+++      +  +p++      ++d+I   evl+h+++
       CCG91265.1  68 IESLH--IKPGYTVADLGAGTGYFTRRFSKAvGNegKVYALDSEPAMVDYLQKEVKNKNLTNVIVKLVKPNNpdlgkaSIDIIFICEVLHHIDN 159
                      44333..45666899*************77625578*************99844444444444444444444555666**************** PP

  Methyltransf_23  98 ppellrqiatllkpgGylllsep 120
                        e+l+++   lk gG + l ++
       CCG91265.1 160 RIEYLKKLSLSLKNGGKIALIDF 182
                      ******************99885 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   2.3e-10   1.7e-07      92     194 ..      65     174 ..      22     180 .. 0.73

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 2.3e-10
                 HHHHTT..--TT-EEEETT-TTTCCHHHCCH.HTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EE....EEEE--TTTGGGG CS
      Met_10  92 erlakl..veegevVvdvfAGiGpfaipiak.yskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqlad....rvvmnlpksaieF 183
                  r+++   +++g +V d+ AG G+f+   +k  +++ +v+a d +P+ v yl++ +k  ++ +v+  + + ++  + +  +d      v+ ++++ ie+
  CCG91265.1  65 DRIIESlhIKPGYTVADLGAGTGYFTRRFSKaVGNEGKVYALDSEPAMVDYLQKEVKNKNLTNVIVKLVKPNNPDLGKASIDiifiCEVLHHIDNRIEY 163
                 4666655689***************988776248999*******************9877776655444433333334444422225577788888888 PP

                 HHHHHHHEEEE CS
      Met_10 184 ldkvlaalkdg 194
                 l+k+   lk+g
  CCG91265.1 164 LKKLSLSLKNG 174
                 88766666555 PP

>> Fibrillarin  Fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   6.5e-09   4.9e-06      63     171 ..      68     177 ..      65     184 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 6.5e-09
                  -S--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEE.ESSSTTHHHH.HH CS
  Fibrillarin  63 lkelpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifa.Dvaqpdqari.la 158
                  +++l+ik+g  v  lGa++G      s  vg+eg+vya++  p ++ ++++   k kn+  ++    kP++      ++D+if  +v +    ri   
   CCG91265.1  68 IESLHIKPGYTVADLGAGTGYFTRRFSKAVGNEGKVYALDSEPAMV-DYLQKEVKNKNLTNVIVKLVKPNNPDLGKASIDIIFIcEVLHHIDNRIeYL 164
                  6889************************************887665.66677778899**9999999**9999999999*999536666666666234 PP

                  HHHHHHEEEEEEE CS
  Fibrillarin 159 knaklflkeggyl 171
                  k  +l lk+gg++
   CCG91265.1 165 KKLSLSLKNGGKI 177
                  4556667777665 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.3e-08   9.7e-06     102     217 ..      59     179 ..      26     182 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.3e-08
                     HHH...HHHGGGS.--TT-EEEEET-TTSHHHHHH...HHCT-S.EEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T..---EEEEE CS
  Methyltransf_9 102 wkW...drvlphlsdlkgrtildvGcgnGyhlwrm...vgegak.lvvGidPselfliqfeavrkllgedqrahllplgieqlpe..leafdtvf 187
                      kW   dr+ + l    g t++d+G g+Gy+  r    vg++ k  ++  +P+ + ++q e  +k l++      + l   + p    ++ d++f
      CCG91265.1  59 DKWqkpDRIIESLHIKPGYTVADLGAGTGYFTRRFskaVGNEGKvYALDSEPAMVDYLQKEVKNKNLTNV----IVKLVKPNNPDlgKASIDIIF 149
                     4551115666655555688************988633366555416889999999999988766666333....3333333444423589***** PP

                     EES-GGG-S-HHHHHHHHHCTEEEEEEEEE CS
  Methyltransf_9 188 smGvlyhrrsPldhllqlkdqlvkgGelvl 217
                        vl+h    ++ l +l  +l++gG++ l
      CCG91265.1 150 ICEVLHHIDNRIEYLKKLSLSLKNGGKIAL 179
                     **************************9876 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.6e-08   1.9e-05      20      79 ..      65     126 ..      62     139 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.6e-08
                 HHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHHCHTTTCCCEE CS
      RrnaAD  20 neIldklnleekltvleigpGkGilTeeLakra...kqvvvlElderLakllqkklskdeklk 79 
                 ++I++ l +++  tv ++g+G+G +T+++ k +    +v +l + ++++  lqk+++ +++l+
  CCG91265.1  65 DRIIESLHIKPGYTVADLGAGTGYFTRRFSKAVgneGKVYALDSEPAMVDYLQKEVK-NKNLT 126
                 79*******************************99889****************998.66655 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.1e-07   8.6e-05      12      71 ..      67     121 ..      60     184 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.1e-07
                 HHHHHT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS..HHHTTEEEECS-CC CS
        FtsJ  12 idekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..aplpgvttiqgdit 71 
                 i e  + +kpg tv Dlga++G ++   ++ +g++gkv+a+D  p   +       +q  ++
  CCG91265.1  67 IIESLH-IKPGYTVADLGAGTGYFTRRFSKAVGNEGKVYALDSEPAmvD------YLQKEVK 121
                 667777.89*********************************9886441......3333333 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     3e-07   0.00022      47     164 ..      60     179 ..      48     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3e-07
                 HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--..EEEEEES-HHHHHHHHHHHHTS-SSS.-EEEEES-GGG---.--SEEEEES-GGGTS CS
        CMAS  47 qlaKldlileklelkpGmtlLdiGcGWGslvrraverydv..kvvglTlSkeqaklakkrvdeldler.kvevklldyedlde.kvdrvvsvgafehvg 141
                 + +K d+i+e l++kpG t+ d+G+G G+ +rr  +  +   kv +l        + +k+v++ +l++  v++   +  dl +  +d +   +++ h+ 
  CCG91265.1  60 KWQKPDRIIESLHIKPGYTVADLGAGTGYFTRRFSKAVGNegKVYALDSEPAMVDYLQKEVKNKNLTNvIVKLVKPNNPDLGKaSIDIIFICEVLHHID 158
                 56899*************************9987776655115666655555678999***9999765256777778889988899***********96 PP

                 GGGHHHHHHHHHHHS-TT-EEEE CS
        CMAS 142 kenydtffkklkkllkedGllll 164
                   n  ++ kkl+  lk++G ++l
  CCG91265.1 159 --NRIEYLKKLSLSLKNGGKIAL 179
                 ..5679*************9876 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         5   3.7e+03     142     165 ..      16      40 ..      15      58 .. 0.68
   2 !   20.7   0.0   3.7e-07   0.00028      32      94 ..      67     129 ..      63     157 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5
       GCD14 142 lCsfsPCieqv.qrtceaLrelgft 165
                 +Csf    +q  q t+e+ +++g+ 
  CCG91265.1  16 FCSFPTYGQQSdQTTIEQKAKHGYH 40 
                 6888666666535667777777764 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 3.7e-07
       GCD14  32 iimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlv 94 
                 ii +L++kpG  v + G+G+g ++  ++++v+  G++++++   + ++  ++e ++++l++++
  CCG91265.1  67 IIESLHIKPGYTVADLGAGTGYFTRRFSKAVGNEGKVYALDSEPAMVDYLQKEVKNKNLTNVI 129
                 8899****************************************************9997743 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.8e-07   0.00051      18      69 ..      69     118 ..      41     139 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.8e-07
  Methyltransf_32  18 kelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaek 69 
                      ++  + ++  tv+D+GaG gY +++ +  ++ ++ kv+++d++ ++v+  +k
       CCG91265.1  69 ES-LHIKPGYTVADLGAGTGYFTRRFSK-AVGNEGKVYALDSEPAMVDYLQK 118
                      33.5667889*****************9.7789**********999987665 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   8.7e-07   0.00065      96     199 ..      77     192 ..      58     216 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 8.7e-07
        DREV  96 kklldlGaGdGeitkrvaptfee...vyatelsetmrdrlkk....kk.ynvlsale.lqetdv...kldlilclnlldrcfdplklledirsalepng 182
                  ++ dlGaG G  t+r ++ + +   vya +    m d l+k    k+  nv+ +l   ++ d+    +d+i   ++l   ++ ++ l+ + + l+  g
  CCG91265.1  77 YTVADLGAGTGYFTRRFSKAVGNegkVYALDSEPAMVDYLQKevknKNlTNVIVKLVkPNNPDLgkaSIDIIFICEVLHHIDNRIEYLKKLSLSLKNGG 175
                 5799****************987788************9987432122235665543245555432289****************************99 PP

        DREV 183 rvivalvlPvshyvetn 199
                 ++ +    P  +y   +
  CCG91265.1 176 KIALIDFYPNAPYGPPQ 192
                 99988888888886555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.4e-06    0.0025      24      85 ..      68     133 ..      45     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.4e-06
                 HHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGC...EEEE CS
         MTS  24 letlpkelsgkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleankle...vevv 85 
                 +e l+ +   +v+DlG+G+G+ +  + k+  +   v ++d + + ++  ++ +++++l    v++v
  CCG91265.1  68 IESLHIKPGYTVADLGAGTGYFTRRFSKAVGNEGkVYALDSEPAMVDYLQKEVKNKNLTnviVKLV 133
                 67777777889*************99998776545*******************999985544444 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.9e-05     0.059      11      89 ..      72     151 ..      66     153 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.9e-05
  Methyltransf_18  11 lvekgsrvaDiGtDHgylpiylvke.gkakkviasDinegplekakeniekagledkievrlsdGleklkeeevdtvvia 89 
                      ++++g++vaD G+  gy +    k  g+  kv+a D ++  ++  ++++++++l++ i   +      l + ++d++ i+
       CCG91265.1  72 HIKPGYTVADLGAGTGYFTRRFSKAvGNEGKVYALDSEPAMVDYLQKEVKNKNLTNVIVKLVKPNNPDLGKASIDIIFIC 151
                      58899*************999887537888************************99887666666666666667777776 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.7e-05     0.073       4      71 ..      71     138 ..      68     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.7e-05
                      H---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCC CS
  Methyltr_RsmB-F   4 LapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarki 71 
                      L+ +++ t+ Dl a+ G  T   ++ + n+g+v+A+d +   ++ +++ +k  ++tn+iv  +  +++
       CCG91265.1  71 LHIKPGYTVADLGAGTGYFTRRFSKAVGNEGKVYALDSEPAMVDYLQKEVKNKNLTNVIVKLVKPNNP 138
                      6778888999************************************************9988766666 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.12      42     168 ..      56     183 ..      33     209 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
                     HHHTTHHHHHHHHHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT.-EEEEEE-.HHHHHHHHHHS-----TTEEEEES-TTTS-----..SEEE CS
  Methyltransf_2  42 glqessslvakkvleafdleglkslvDvGGGtGalakaivsayPt.ikvivfDl.peVveaAkehlsageeervefvgGdffkdslPea..Dail 132
                       +++++   ++++e+ ++++  ++ D+G GtG + +  ++a  +  kv  +D  p  v   ++ ++ ++ ++v +      +  l +a  D+i+
      CCG91265.1  56 KERDKWQ-KPDRIIESLHIKPGYTVADLGAGTGYFTRRFSKAVGNeGKVYALDSePAMVDYLQKEVKNKNLTNVIVKLVKPNNPDLGKAsiDIIF 149
                     4444444.567899999999999999*******99999999986414666677457788877777655555555444433344444444449*** PP

                     EESSGGGS-HHHHHHHHHHHHHH--TT-EEEEEE-- CS
  Methyltransf_2 133 lkrvlhDwsdekcvklLkrvkkalpagGkvivveav 168
                     +  vlh  + ++  + Lk++  +l++gGk+ +++  
      CCG91265.1 150 ICEVLHHID-NR-IEYLKKLSLSLKNGGKIALIDFY 183
                     ******664.44.5789***************9865 PP

>> PRMT5  PRMT5 arginine-N-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00015      0.11      63     140 ..      74     147 ..      31     161 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
                 .-EEEEEEES-TTSHHHHHHHHHHHHHCCCEEEEEEEES-HHHHHHHHHHHHHHTTCCG.CEEEES-CCCCCHCC-ECE CS
       PRMT5  63 ekklvilvvGaGRGplvdralkaleetkvtkvkivavEKnpnavvtLqkkvneekWeek.veviksdmrelkaeekvdl 140
                 +  ++++ +GaG G + +r  ka+ +++    k++a++  p+ v +Lqk+v++++ ++  v+++k +  +l + + +d+
  CCG91265.1  74 KPGYTVADLGAGTGYFTRRFSKAVGNEG----KVYALDSEPAMVDYLQKEVKNKNLTNViVKLVKPNNPDLGKAS-IDI 147
                 556788889*******999999988888....9********************9998887999988766665443.443 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       9.4     7e+03     128     145 ..      45      62 ..      31      67 .. 0.52
   2 ?   10.9   0.0   0.00031      0.23       4      55 ..      78     130 ..      75     139 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9.4
                     HHHHCSTTEEESSCCCSC CS
  Methyltransf_4 128 kvleeeplferlskeeel 145
                     +v +  +lfe+ ++++++
      CCG91265.1  45 DVHHYAQLFESKERDKWQ 62 
                     333333445544444444 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00031
                     EEEEET-TTSHHHHHHHHHST.TSEEEEEES-HHHHHHHHHHHHHCTTSSEEE CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkknP.dknflGiEirvkvvakvlkkiealelkNlri 55 
                     +v+++G G G f+ + +k+   + ++ +++ +  +v+++ k++++++l+N+ +
      CCG91265.1  78 TVADLGAGTGYFTRRFSKAVGnEGKVYALDSEPAMVDYLQKEVKNKNLTNVIV 130
                     689***************976266899***********************965 PP

>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.13      50     104 ..      64     130 ..      25     158 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
                 -............EEEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--GGEE CS
         TRM  50 k............ikvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneveeivv 104
                 +             +v+d  +++G  + Rf++ v ++ +v+a D ++  v+ +++ vk ++  +++v
  CCG91265.1  64 PdriieslhikpgYTVADLGAGTGYFTRRFSKAVGNEGKVYALDSEPAMVDYLQKEVKNKNLTNVIV 130
                 266666666666688999999**********************************999998886332 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00021      0.15      48     131 ..      77     155 ..      40     179 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00021
  Methyltransf_16  48 lsvlELGsGtGlvGlavaell.peakviltDlee.llellkknielnknalkskvkvevLdWgeeleedllekeevDlilaaDcvY 131
                       +v +LG+GtG +   + +++ +e kv+  D e  +++ l+k ++  k  + ++v v+  + ++   +dl  k ++D+i +  ++ 
       CCG91265.1  77 YTVADLGAGTGYFTRRFSKAVgNEGKVYALDSEPaMVDYLQKEVKN-K--NLTNVIVKLVKPNN---PDL-GKASIDIIFICEVLH 155
                      67999***************889********998799*******98.4..45556666655533...555.345577777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 1719.09
//
Query:       CCG91266.1  [L=56]
Description: hypothetical protein MFUM_1010090 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       195  (0.0108762); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 430.04
//
Query:       CCG91267.1  [L=66]
Description: hypothetical protein MFUM_1010091 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       121  (0.00674884); expected 358.6 (0.02)
Passed bias filter:                      116  (0.00646996); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 518.12
//
Query:       CCG91268.1  [L=82]
Description: hypothetical protein MFUM_1010092 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 655.48
//
Query:       CCG91269.1  [L=101]
Description: DNA-binding protein HU-beta [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-26   90.0   2.2      1e-25   89.7   2.2    1.1  1  Bac_DNA_binding  Bacterial DNA-binding protein
    0.00026   21.1   0.3    0.00032   20.8   0.3    1.2  1  HU-HIG           HU domain fused to wHTH, Ig, or Glycine-rich
  ------ inclusion threshold ------
       0.19   12.4   1.4        0.2   12.4   0.2    1.6  2  SLY              Lymphocyte signaling adaptor protein


Domain annotation for each model (and alignments):
>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   2.2   1.7e-29     1e-25       2      89 ..      12     101 .]      11     101 .] 0.96

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 1.7e-29
                      EHHHHHHHHHTT--..--HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEEEEE--BS-B-TTT--B--B--EEEEEEEE-HHHHHHH CS
  Bac_DNA_binding   2 tkkeLieeiaektg..ltkkdakrvveafldtikeaLkkgekvelsgFGtfkvkerkartgrnpkTgekvkiparkvvkFkpskelkeav 89 
                      +k+ L+e++ +++g   tk+ a+r v+a+++ +k+ + k++ v+l gFGtf v +rkar g+npkTgek+ki+a+k+v+F+p+kelke++
       CCG91269.1  12 NKASLVETVQKNMGkdTTKALAERSVDAVINGLKSGILKNGIVQLIGFGTFRVITRKARMGVNPKTGEKIKIKASKTVRFSPGKELKEKL 101
                      8********99996447***********************************************************************86 PP

>> HU-HIG  HU domain fused to wHTH, Ig, or Glycine-rich motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.3   5.3e-08   0.00032      37     118 ..      16     101 .]       4     101 .] 0.80

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.3e-08
      HU-HIG  37 Lceeiskrst..lsrgdvkavldaledelkeaLadGerVeLgelGyFslslks.kgvedekevransikk.kkinfrpgkklkkel 118
                 L+e ++k  +   +++  +  +da+++ lk  + +  +V+L ++G+F++  +  +   ++k+ ++ +ik  k+++f+pgk+lk++l
  CCG91269.1  16 LVETVQKNMGkdTTKALAERSVDAVINGLKSGILKNGIVQLIGFGTFRVITRKaRMGVNPKTGEKIKIKAsKTVRFSPGKELKEKL 101
                 66666655432256777778899999999***9***************9888868888899999999986367**********985 PP

>> SLY  Lymphocyte signaling adaptor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   3.4e-05       0.2      58      81 ..      13      37 ..       2      50 .. 0.81
   2 ?   -1.5   0.1      0.61   3.7e+03     102     111 ..      77      86 ..      59     100 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.4e-05
         SLY 58 ra.isrTmrkkmgKkyvkaLseeke 81
                +a + +T +k mgK  +kaL+e + 
  CCG91269.1 13 KAsLVETVQKNMGKDTTKALAERSV 37
                666889****************965 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.61
         SLY 102 stekvslkas 111
                 + ek+++kas
  CCG91269.1  77 TGEKIKIKAS 86 
                 2333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 732.26
//
Query:       CCG91270.1  [L=441]
Description: tRNA nucleotidyltransferase/poly(A) polymerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-35  120.7   0.0    9.9e-35  119.7   0.0    1.5  1  PolyA_pol        Poly A polymerase head domain
    1.5e-21   75.9   0.0    3.3e-21   74.8   0.0    1.6  1  PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polym
    6.1e-10   39.3   0.3    1.6e-09   37.9   0.3    1.6  1  tRNA_NucTran2_2  tRNA nucleotidyltransferase domain 2 putativ
    6.7e-09   36.0   0.1      2e-08   34.5   0.1    1.8  1  HD               HD domain


Domain annotation for each model (and alignments):
>> PolyA_pol  Poly A polymerase head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   2.2e-38   9.9e-35       1     126 []      19     141 ..      19     141 .. 0.98

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 2.2e-38
                 EEEETHHHHHHHTT---CEEEEEECS-HHHHHHHHHHHHT-EEEEETTTTCCCCEECCEEEEECCEECEEEEEE---SSHHH...HHHHHHCTSSBGGG CS
   PolyA_pol   1 lylvGGaVRDlllgkepkDvDlatdaapeelakllrkkvkeallsgeefqtiavlekkqllevatfRlekdesdarnpesekstesleeDlkrRDftiN 99 
                 ++++GG+VRD+ll+kep+D+D+at+a+pee+++l+++k+ +  l g+ f+++ v  +++ +evatfR++   +  r p  +++ ++ +eD+ rRDftiN
  CCG91270.1  19 AFFAGGCVRDILLEKEPHDIDIATSATPEEVQQLFKDKATG--LIGKAFGVVRVRSGHHFFEVATFRTDIGSEGGRWPAAVRF-STPKEDALRRDFTIN 114
                 589**************************************..77*************************************9.59************* PP

                 S-EEECTTTCEE-TTSHHHHHHTTEE- CS
   PolyA_pol 100 alaynlnkgkvlDlfgGikdLkskvir 126
                  ++y++  ++++D+++G +d+++k+ir
  CCG91270.1 115 GIFYDPIADQIIDYVKGTEDIEKKIIR 141
                 ************************997 PP

>> PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polymerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   7.3e-25   3.3e-21       2      60 ..     169     227 ..     168     230 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 7.3e-25
  PolyA_pol_RNAbd   2 FtIepeTaaairklaplLkkispeRifeEllKlLlsghpeaglelLretgLlkylfPel 60 
                      F+Ie++T++air+ a+ + +is+eRi+eEl+K+++s++p++gl+lL++++Ll++++Pe+
       CCG91270.1 169 FRIEENTWNAIRQSAQAILNISAERIREELDKIFCSPDPARGLDLLDQSNLLAVILPEI 227
                      9*********************************************************8 PP

>> tRNA_NucTran2_2  tRNA nucleotidyltransferase domain 2 putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.3   3.6e-13   1.6e-09      23     146 ..     298     429 ..     291     431 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 3.6e-13
  tRNA_NucTran2_2  23 qarsfLkswkfsnklikavtallkllekrk.naeltklelykagee....alllaeelaqaqgqa.....edlqaldeiyqaLpIkskkeLait 106
                       a++++  +++s+++ik+v++ +k +   k   +++k ++ k  ++    + l++ ++  + ++      + l++ +e y++    s   L it
       CCG91270.1 298 IAENIMTRLRYSRDTIKKVVECVKNHMTFKdVPKMKKATVKKLILKptfpIELELHRIDCLSSHGnlsiyNFLNQAKEAYSTEASLSPPKL-IT 390
                      58999*******************999999633444444433333321114444445533333335568899********999999*****.** PP

  tRNA_NucTran2_2 107 GkdLlealgvkpGpwlgeiLkeleqavvegeleNekeall 146
                      G dL++  g++pG+++geiL+ + +a++e++++  keall
       CCG91270.1 391 GYDLIAM-GLQPGKKVGEILELVREAQLEEKISSRKEALL 429
                      ******9.*******************************8 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.1   4.4e-12     2e-08      27      93 ..     262     328 ..     245     360 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 4.4e-12
                 HHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHTTCCHHH CS
          HD  27 llllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld...ledvaklirehheswe 93 
                  l+l aL+HD+Gk+++     +++e + +f++He+vga+i++++  rl+++   ++ v++ +++h   ++
  CCG91270.1 262 ELVLSALFHDVGKPLTF---TRDKEGNIHFYGHEIVGAKIAENIMTRLRYSrdtIKKVVECVKNHMTFKD 328
                 3779***********55...58888899********************9999999999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3316.50
//
Query:       CCG91271.1  [L=335]
Description: Uncharacterized conserved membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-45  154.1  28.8    6.9e-45  153.9  28.8    1.0  1  LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region


Domain annotation for each model (and alignments):
>> LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9  28.8   3.8e-49   6.9e-45       1     301 []      17     317 ..      17     317 .. 0.93

  Alignments for each domain:
  == domain 1  score: 153.9 bits;  conditional E-value: 3.8e-49
  LPG_synthase_TM   1 illglalsalllalllrgvdlaalaaalrsldpwwlllalllallsvllralrWrlllrslgarislrrllrayliglfvnnvtPgalgGevvr 94 
                      i+l+ ++s ++l +l+ +vd++++a++ ++++p  ++l ++++ ++v+++a+rW++ll++ g  is  +++ ++lig+f+n ++ g++gG++vr
       CCG91271.1  17 IVLRSLISTGILSFLFFKVDWTKIATVAQRANPVDIVLGIFFGGGQVFFSAIRWKILLQTQGIFISRAKAFELTLIGQFFNAFLLGSTGGDIVR 110
                      68999***************************************************************************************** PP

  LPG_synthase_TM  95 ayllkrkegvslskalasvvverlldllalvllgllallllggllaegaa....vllllalallllavlalllllllrrrlarlarvlkrlarl 184
                      +y++ + +    ++   sv+ +r+++ll+lvl+gll+++ +++l+++ +     v+++l++ l++l++++l+l++ + +  +rl++  +++++ 
       CCG91271.1 111 IYYIIQLYPEKKTAGSLSVIYDRVVGLLGLVLIGLLLAVNFYHLFQANPItrhaVWIFLVVTLIILLLFGLILFFPRLFSVVRLQKNESSFFSN 204
                      ******666666666666777**********************999888899999999999999999999999999999999999999999885 PP

  LPG_synthase_TM 185 larfarklasakrklvlasprrlllafllslliwllealtlylllralgvdvslallllillaltlvgalpplPgGlGvrEaalalllallGvs 278
                      + +f     +   +++++ ++  lla+l+s++ +++++ ++y++ r+l++d++++ l++ l+++++++ +p++++GlG+rE++ ++ ++llG+ 
       CCG91271.1 205 P-SFNNLFDAI--RRYRHGKKENLLALLYSFASHGSTLIMAYFATRSLNLDIPFLYLAATLAIVSVLISIPITISGLGIREGLIVVFFHLLGIK 295
                      4.444444433..689****************************************************************************** PP

  LPG_synthase_TM 279 aaealaaallyrlitlylllllG 301
                      ++ al+++ll+ +++l ++ l+G
       CCG91271.1 296 TEPALSFSLLVFGMSL-FWSLVG 317
                      ****************.999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1160  (0.0646996); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2281.43
//
Query:       CCG91272.1  [L=944]
Description: Glycine dehydrogenase (decarboxylating) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.9e-168  560.2   0.0   3.3e-157  523.7   0.0    3.3  3  GDC-P            Glycine cleavage system P-protein
    3.7e-05   22.9   0.0    0.00016   20.8   0.0    1.8  2  Aminotran_5      Aminotransferase class-V
      0.002   16.9   0.0        1.7    7.3   0.0    2.2  2  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
  ------ inclusion threshold ------
       0.03   13.6   0.0      0.051   12.9   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> GDC-P  Glycine cleavage system P-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  523.7   0.0  7.4e-161  3.3e-157       1     430 []       9     436 ..       9     436 .. 0.97
   2 !   28.6   0.0   1.4e-10   6.3e-07      23     285 ..     447     727 ..     445     735 .. 0.75
   3 !    3.8   0.0    0.0047        21     331     374 ..     755     798 ..     741     862 .. 0.87

  Alignments for each domain:
  == domain 1  score: 523.7 bits;  conditional E-value: 7.4e-161
                 HHH-SS-HHHHHHHHHHHT-SSHHHHHHHHS-GGGB--S---------HHHHHHHHHHHHTTB---EE--BTTB------HHHHHHTTT-HHHHS--S- CS
       GDC-P   1 erhigpsekdqkemLetlGlkslddliekavPkeiklkkelkleapksEeellaelekiasknkvvksfiGaGyydtilPaviqrnilenpewytaYtP 99 
                 +rhigps+++ kemL++l lksl++l++ka+P++++++ +l+l++++sEee+l+el++i ++n+ +++fiG+Gy + i P+vi r ilenp+wyt+YtP
  CCG91272.1   9 DRHIGPSNEEIKEMLDFLDLKSLEELTTKAIPESLRTASSLNLPEGTSEEEALKELKAIGNQNRSFRYFIGMGYSESICPKVIRRMILENPDWYTPYTP 107
                 69************************************************************************************************* PP

                 SSGGG-HHHHHHHHHHHHHHHHHHT-SEE-S-BS-HHHHHHHHHHHHHHH-SSS.--EEEEETTS-HHHHHHHHHHHGGGT-EEEEE-GGG--S-...S CS
       GDC-P 100 YqaEisqGrLeallnfqtlvadltGldianasllDegtAaaEAvllaaraskkk.akkvvvdkkvhpqtlevlktrakglgieivevdlteekvtdkek 197
                 Yq+EisqGrLeal+nfqtlv++lt l+ianasllDe++A  EA+l+++r +  k +++++++k++hpq l+v+ tr+++lgi++v++d ++ +++   +
  CCG91272.1 108 YQSEISQGRLEALFNFQTLVSELTALPIANASLLDEASACVEAMLMCKRLTADKnRTRFFLSKDCHPQILSVMLTRSRPLGIDLVIEDWQKVGID---T 203
                 *************************************************887664799******************************8887777...7 PP

                 -EEEEEEEES-TTSB----HHHHHHHHHTT-EEEEEE-TTGGGTB--HHHHT-SEEEEE-TTTT---GGG----EEEEE-GGGGGG--S-EEEEEEBTT CS
       GDC-P 198 evagvlvqypnteGriedlkelvekakkkkslvvvaadllaLtllkpPgelgaDivvGsaqrfGvPlgyGGPhagffAvkeklkRkiPGRlvGvskDae 296
                 +++g l+ yp+t+G+++d++++ve++++k +lvvv +dllaL+l+kpPge+gaDi+vGsaqrfG+Pl +GGPh +f+ +++ ++Rk+PGR+vG+skD  
  CCG91272.1 204 SFFGTLISYPDTNGHLYDFSSFVESLHQKGILVVVHTDLLALSLFKPPGEFGADIAVGSAQRFGLPLFFGGPHPAFISARKGMERKMPGRIVGISKDVY 302
                 *************************************************************************************************** PP

                 S-EEEEEE-CCGSHHCCHHHCS-S--S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T-EE--SSBSSEEEEE--TTTHHHHHHHH CS
       GDC-P 297 gkralrlalqtREqHirRdkAtsniCtaqaLlAnlaalyavyhGkeglkeiarrihkkteilakelkkkleeelkkkkffdtllieveekaaekvlkka 395
                 g++a+rlalqtREqHirR+kAtsniCtaq+L A++a++yavyhG+egl + +++i++ + +l ++l   l+ +     ffdtl+i ++++  e++++++
  CCG91272.1 303 GTPAFRLALQTREQHIRREKATSNICTAQVLPAIVASMYAVYHGAEGLLANSQKILSYAYFLYNQLSA-LGFKPYPFPFFDTLKIPMDKEKLEEIKNRG 400
                 ******************************************************************77.688888999********************* PP

                 HHTTEE-EEESTT.EEEEE--TT--HHHHHHHHHHH CS
       GDC-P 396 ekeglnlrkvelk.tvgialdEtvtkedieallkvl 430
                 +++g+ +r+ e+  ++gi+l E++t ed+  llk++
  CCG91272.1 401 LEQGYLFREFEEAsALGITLGEKTTPEDLLLLLKIF 436
                 ****98888776669***************999987 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.4e-10
                 HHHHHHHHS-GGGB--S-------....--HHHHHHHHHHHHTTB--.-EE--BTTB------HHHHHHTTT-HHHHS--S-SSG.GG-HHHHHHHH.. CS
       GDC-P  23 lddliekavPkeiklkkelkleap....ksEeellaelekiasknkv.vksfiGaGyydtilPaviqrnilenpewytaYtPYqa.EisqGrLeall.. 113
                 ld+l   ++P +++ ++++  ++      sE++l + ++++ask+   + s+i  G   ++l a+ +  i    + +t+  P+   E ++G   ++l  
  CCG91272.1 447 LDHLEIPSIPVSLQRQTKFLTQKIfkeyRSETKLNRYIKRLASKDISlTISMIPLGSCTMKLNAAAEM-IPILWDCFTEPHPFAGrEQTKGY--SMLas 542
                 66666677887777666555444444449999*************98799********9999998877.65567788999999642555555..55533 PP

                 HHHHHHHHHHT-SEE-S-BS-HHHHHHHHHHH.HHHH-.....SSS--EEEEETTS-HHHHHHHHHHHGGGT-EEEEE-GGG--S-............. CS
       GDC-P 114 nfqtlvadltGldianasllDegtAaaEAvll.aaras.....kkkakkvvvdkkvhpqtlevlktrakglgieivevdlteekvtd..........ke 196
                 +    +a++tG+d    sl  ++   +E + l a ++      +++++  ++  + h  +       a   g++i+e  + ++++ d          ++
  CCG91272.1 543 DLEEWIAEITGMDF--VSLQPNAGSQGEIAGLlAIKNYlgsigQSQRNVCLIPISAHGTNC----ASAALCGFDIEELACDAQGKLDlldletkarkNA 635
                 7899*********8..589999999999665514444311111233333344433333333....3566778888888888888888889999999889 PP

                 S-EEEEEEEES-TTSB---.-HHHHHHHHHTT-EEEE.EE-TTGGGTB--HHHHT-SEE.EEE-TTTT---GGG----EEEEE-GGGGGG-- CS
       GDC-P 197 kevagvlvqypnteGried.lkelvekakkkkslvvv.aadllaLtllkpPgelgaDiv.vGsaqrfGvPlgyGGPhagffAvkeklkRkiP 285
                 + +a+v+v +p+t G  e+ l e++  +++    + +  a+  a   l  Pgelg+D+  +   + f +P g GGP +g +Avk++l   +P
  CCG91272.1 636 QRLAAVMVTFPSTYGIFEEtLPEVARIVHRFGGQLYMdGANANAFLGLCKPGELGVDVChLNLHKTFCIPHGGGGPGVGPIAVKKHLGPFLP 727
                 99*************9988689*******99876665379999999999*********84667889******************99876665 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.0047
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T-EE--SS CS
       GDC-P 331 laalyavyhGkeglkeiarrihkkteilakelkkkleeelkkkk 374
                 ++ +++ + Gkeglk+ ++    +++++ak+l+++++  +k+ +
  CCG91272.1 755 VSWMFIRMAGKEGLKRCSQIAILNANYMAKKLESAFNILFKGPH 798
                 56789999*************************99888777665 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.15   6.6e+02     153     200 ..     217     264 ..     214     269 .. 0.81
   2 !   20.8   0.0   3.6e-08   0.00016      77     217 ..     574     722 ..     565     739 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.15
                  TEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETT CS
  Aminotran_5 153 GtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsgh 200
                  G + ++ ++++ +++kg+lv+v     +++      ++g+D+++ s++
   CCG91272.1 217 GHLYDFSSFVESLHQKGILVVVHTDLLALSLFKPPGEFGADIAVGSAQ 264
                  778899999***********9987777777777777888888887777 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 3.6e-08
                  HHHHCCCC.-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBE..TTTTE.B--HHHHHHHHHHTT- CS
  Aminotran_5  77 valslars.lkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvs..nvtGt.iqpveeigklakkkga 170
                  ++++++ s  + ++++ +  +  h++   ++ +a  +g++++ +  d++g+ldl +le++ +++++ +a  +v   ++ G+  + ++e+++++++ g 
   CCG91272.1 574 AIKNYLGSiGQSQRNVCLIPISAHGTN--CASAA-LCGFDIEELACDAQGKLDLLDLETKARKNAQRLAAVMVTfpSTYGIfEETLPEVARIVHRFGG 668
                  556666665556666666666677776..33333.57********************99998777655554443237789977889**********99 PP

                  EEEEE-TTT.TTTS---HHHHTESEEEEETTT.TTSSTT.....-EEEEEEHHH CS
  Aminotran_5 171 lvlvDaaqa.vghipidvkklgvDflafsghK.llgPtG.....iGvlyvrkel 217
                   + +D+a a +     +  +lgvD+  +  hK ++ P G     +G + v+k+l
   CCG91272.1 669 QLYMDGANAnAFLGLCKPGELGVDVCHLNLHKtFCIPHGgggpgVGPIAVKKHL 722
                  9****9976256667899**************9998875111116666666655 PP

>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00038       1.7     160     243 ..     602     681 ..     586     686 .. 0.86
   2 !    7.3   0.0   0.00037       1.7     324     371 ..     757     802 ..     745     806 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00038
                    HHHHHHT-EEEEE--BTTTBB-HHHHHHHHHHHHCTT.EEEEEEEEBS-TTT-BB.--HHHHHHHHHHCT-EEEEE-TTGGGGGG CS
  Pyridoxal_deC 160 kaalvlgvklrvipldengklrgaalekaieedkekGlipffvvatlGttvlgaF.ddlkelgdicekydlwlHvDAAyaGsafi 243
                      a+++g+ + ++ +d +gkl   +le +  ++ ++      v++t+ +t+ g F ++l e++ i+++ + +l +D A a  af+
     CCG91272.1 602 ASAALCGFDIEELACDAQGKLDLLDLETKARKNAQR--LA-AVMVTFPSTY-GIFeETLPEVARIVHRFGGQLYMDGANAN-AFL 681
                    46899*************************999999..44.7999**9996.66625799******************997.554 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00037
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECSTTBSSEEE CS
  Pyridoxal_deC 324 wfvlralGveglqnqirksvelakyleklirkderfeivaevelglVc 371
                    w+++r+ G egl++  +  + +a+y++k+++  + f+i ++  +g V+
     CCG91272.1 757 WMFIRMAGKEGLKRCSQIAILNANYMAKKLE--SAFNILFKGPHGYVA 802
                    ****************************997..468888877777776 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.1e-05     0.051      31     203 ..     538     705 ..     528     709 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
                      -HHHHHHHHHHHHHTT-SEEEEES....-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHC......C--EEEEE-EBTTTBE-HHHH CS
  Beta_elim_lyase  31 dktvnrLedavaelfgkeaalfvp....qGtaAnsillkillqrgeevivtepahihfdetgaiael......agvklrdlknkeaGkmdlekl 114
                      +    +Le+ +ae++g++ +   p    qG  A  +++k  l    + i +++ +++     a+ +        g    +l  +++Gk+dl +l
       CCG91272.1 538 SMLASDLEEWIAEITGMDFVSLQPnagsQGEIAGLLAIKNYL----GSIGQSQRNVCLIPISAHGTNcasaalCGFDIEELACDAQGKLDLLDL 627
                      556678999999999999888755212256666666664444....4444444444444444444444000005555666666666******** PP

                      HHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--S CS
  Beta_elim_lyase 115 eaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllan 203
                      e + ++ +a  ++ +++++t    +  G  +  e l eva i+++ g +l +DgA  ana     +++ e+  +vD++ + l K  +++
       CCG91272.1 628 ETKARK-NA--QRLAAVMVTFPSTY--G--IFEETLPEVARIVHRFGGQLYMDGAN-ANAF-LGLCKPGEL--GVDVCHLNLHKTFCIP 705
                      **9999.33..68999998888887..5..56899*******************93.3333.222444443..4555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (944 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 6451.71
//
Query:       CCG91273.1  [L=129]
Description: Glycine cleavage system H protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-45  152.7   0.1    4.4e-45  152.5   0.1    1.0  1  GCV_H          Glycine cleavage H-protein
    0.00015   21.7   0.8    0.00082   19.3   0.1    1.9  2  RnfC_N         RnfC Barrel sandwich hybrid domain
    0.00031   20.5   0.1    0.00052   19.8   0.1    1.4  1  Biotin_lipoyl  Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.1   7.4e-49   4.4e-45       2     121 ..       8     126 ..       7     127 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.5 bits;  conditional E-value: 7.4e-49
                 EE-TTSEEEEEETT.EEEEEE-HHHHHHH-SEEEEE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE-GGGTT-TTHHHH-TTTTT--EEEEE CS
       GCV_H   2 yytkehewvkveedgvatvGitdfaqeelgdvvfvelpevgtkvkkgeslaavEsvKaasevyapvsGevvevNekleeepeliNkdpyeegWliklkl 100
                  yt+ hewv v +d vatvGit++aq el d+vf+elp+vg++v+k+  ++++EsvKaas++yapvsGev+e+N++l+++p liN++py+egWl+k+++
  CCG91273.1   8 LYTDTHEWVMVSGD-VATVGITEHAQRELSDIVFIELPKVGERVSKKSVVGVIESVKAASDLYAPVSGEVLEINSQLTDHPSLINSNPYGEGWLYKIRI 105
                 79***********9.************************************************************************************ PP

                 S-GGGGGGSEEHHHHHHHHHH CS
       GCV_H 101 snleeleeLlsaeeyekllke 121
                  n++el++L +a++y++llk+
  CCG91273.1 106 INPQELHDLKDADAYRELLKN 126
                 *****************9986 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.066     4e+02      73      97 ..      18      42 ..      12      44 .. 0.86
   2 !   19.3   0.1   1.4e-07   0.00082      47      91 ..      45      90 ..      42      93 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.066
      RnfC_N 73 vsGtVkaiekrlvahgsgveavvie 97
                vsG V ++   ++a+ +  + v ie
  CCG91273.1 18 VSGDVATVGITEHAQRELSDIVFIE 42
                89*****999999998888888887 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.4e-07
      RnfC_N 47 kvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrlvahgsgv 91
                kvg++V k  +++  e+   ++  +a+vsG+V +i+++l+ h+s +
  CCG91273.1 45 KVGERVSKKSVVGVIESvKAASDLYAPVSGEVLEINSQLTDHPSLI 90
                89***********9999555779*****************999865 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   8.8e-08   0.00052      22      57 ..      45      80 ..      34      86 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 8.8e-08
                   STTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEES CS
  Biotin_lipoyl 22 kvGdkVkagqvlaeveamKmemeieapkaGvvkeil 57
                   kvG+ V++  v+ ++e+ K+  ++ ap++G v ei 
     CCG91273.1 45 KVGERVSKKSVVGVIESVKAASDLYAPVSGEVLEIN 80
                   89******************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1032.96
//
Query:       CCG91274.1  [L=373]
Description: Aminomethyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-77  260.6   0.0    1.7e-77  260.3   0.0    1.1  1  GCV_T      Aminomethyltransferase folate-binding domain
    4.2e-21   74.6   0.0    6.9e-21   74.0   0.0    1.3  1  GCV_T_C    Glycine cleavage T-protein C-terminal barrel domai
  ------ inclusion threshold ------
      0.056   13.4   0.0       0.19   11.7   0.0    1.8  2  Nup35_RRM  Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.3   0.0   2.8e-81   1.7e-77       1     255 [.      14     261 ..      14     263 .. 0.97

  Alignments for each domain:
  == domain 1  score: 260.3 bits;  conditional E-value: 2.8e-81
       GCV_T   1 lydrhkalgakfvefagwemPvqYasesikaehlavreaaglfDvShmgkievsGpdaaalLqrlltndisklkpgkatytlllnedGgvidDlivarl 99 
                 ly+rh +lga ++++ gw mP++Y  +s+++eh+avre++g+fD+Shmg++ v+Gp+a+++L+ +ltnd+s lk+ +++y l+l e+Gg+idDli++r+
  CCG91274.1  14 LYNRHIELGAYMGTYSGWWMPIYY--TSAIKEHQAVRENSGIFDLSHMGQFFVEGPKAMEWLNGILTNDLSLLKDSESQYHLILSESGGIIDDLILYRI 110
                 79**********************..************************************************************************* PP

       GCV_T 100 dedefllvvnaankekdlawlekaaekkdldvevedvteelallalqGPkarevlskllgadlselkffsfaevelaggkkvlvsRtgytGedGfeiyi 198
                 +  ++llvvna ++ekd++ l  +      dv++ d   +++++a+qGP + +vl++++  +l+ ++   ++++ ++ ++ ++++ tgytGedG e+++
  CCG91274.1 111 GSSSYLLVVNACASEKDYSLLHGYLP--FGDVSLIDNRRKWGCIAIQGPTSWNVLKEVF--SLDPIPKHTIKKIIFE-KEFLYIAATGYTGEDGAELFF 204
                 ***********************666..*******************************..6889999999998887.888****************** PP

       GCV_T 199 paeeaeelweaLleagkeegvkpaGlgArdtlRlEaglrlyghdldeettPleaglg 255
                 p + a++lw+ Lleagk++g+ p+Gl+ r++lRlEa+l+l g dl e+ tP+eagl 
  CCG91274.1 205 PGKIARQLWDHLLEAGKPYGLLPCGLASRNILRLEASLPLNGVDLREDKTPWEAGLS 261
                 *******************************************************96 PP

>> GCV_T_C  Glycine cleavage T-protein C-terminal barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   1.2e-24   6.9e-21       3      80 .]     289     367 ..     288     367 .. 0.94

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 1.2e-24
     GCV_T_C   3 lvgleld.dgapllrggepilrdgevvGhvTSgaysptlgksialAyvkaelaklgtevevevrgkrvpaevvkkpfyD 80 
                 lv ++   ++ p+++ g pi+ +g+++G+vTSg +sp+lg++i+++yv++ +a +g+++e+e+r+k +p e+ kkp+y+
  CCG91274.1 289 LVAFVACeEASPQPKTGSPIFFQGQKCGEVTSGIWSPSLGRTIGMGYVHKSYALIGNKIEIEIRNKLYPFEIRKKPLYK 367
                 67777763668899****************************************************************7 PP

>> Nup35_RRM  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.2e-05      0.19      53      85 ..      28      60 ..      13      69 .. 0.88
   2 ?   -2.2   0.0       0.7   4.2e+03      63      85 ..      86     108 ..      79     115 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.2e-05
                EETTEEEEEBS-HHHHHHHHTTTTEEETTEEEE CS
   Nup35_RRM 53 tgenwvkltYksessaskAlqengtilngsliv 85
                 ++ w+ + Y s ++ ++A++en  i++ s ++
  CCG91274.1 28 YSGWWMPIYYTSAIKEHQAVRENSGIFDLSHMG 60
                5678***********************988776 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.7
                 S-HHHHHHHHTTTTEEETTEEEE CS
   Nup35_RRM  63 ksessaskAlqengtilngsliv 85 
                 +ses+ +  l+e g i+++ ++ 
  CCG91274.1  86 DSESQYHLILSESGGIIDDLILY 108
                 57777777888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 3075.92
//
Query:       CCG91275.1  [L=192]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00065   19.8  13.5     0.0023   18.0  10.3    2.1  2  ADIP            Afadin- and alpha -actinin-Binding
     0.0042   14.7   7.1     0.0049   14.5   7.1    1.0  1  DUF3584         Protein of unknown function (DUF3584)
  ------ inclusion threshold ------
       0.01   15.9   4.3       0.01   15.9   4.3    1.6  2  Laminin_II      Laminin Domain II
      0.038   14.0  19.3      0.021   14.9  16.2    1.9  2  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.054   12.9   0.1      0.054   12.9   0.1    2.8  2  DUF4349         Domain of unknown function (DUF4349)
      0.083   10.8   3.0        0.1   10.5   3.0    1.2  1  V_ATPase_I      V-type ATPase 116kDa subunit family
       0.14   12.4   0.0        1.7    8.8   0.0    2.1  2  stn_TNFRSF12A   Tumour necrosis factor receptor stn_TNFRSF12A
       0.24   11.2  16.4      0.042   13.7  12.3    1.7  2  SPAM            Salmonella surface presentation of antigen ge
       0.44   11.0   7.9    1.3e+02    3.2   7.9    2.7  1  NPV_P10         Nucleopolyhedrovirus P10 protein
       0.48   10.7   4.8       0.36   11.2   1.2    2.2  2  YnfE            Uncharacterized YnfE-like
       0.94    9.6  12.8       0.76    9.9   5.7    2.4  2  Med9            RNA polymerase II transcription mediator comp
        1.1    9.1  13.3       0.37   10.6   5.8    2.2  2  Phage_GP20      Phage minor structural protein GP20
        1.1    9.7   7.2       0.41   11.1   0.4    2.4  2  DASH_Dad2       DASH complex subunit Dad2
        1.5    9.6  11.2       0.44   11.3   6.0    2.1  2  DUF2203         Uncharacterized conserved protein (DUF2203)
        1.7    8.6  13.6       0.16   11.8   8.3    2.0  2  CAMSAP_CC1      Spectrin-binding region of Ca2+-Calmodulin
        2.5    8.9   7.2      2e+02    2.8   7.2    2.6  1  FliD_N          Flagellar hook-associated protein 2 N-terminu
        2.7    8.3  15.5        5.9    7.3   0.3    3.0  3  BLOC1_2         Biogenesis of lysosome-related organelles com
        5.7    5.4  11.2        1.9    7.0   0.4    1.6  2  FapA            Flagellar Assembly Protein A
        7.4    6.4  11.3        7.9    6.3   7.2    2.6  2  DivIC           Septum formation initiator
        7.8    5.3  17.4         23    3.7  17.4    1.6  1  Spc7            Spc7 kinetochore protein
        7.8    7.2  17.5       0.48   11.1  11.7    1.8  2  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac
          8    5.4  10.3         17    4.4   9.0    1.7  2  Atg14           Vacuolar sorting 38 and autophagy-related sub
        9.1    6.3   8.6         27    4.8   5.4    2.3  2  DUF1664         Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0  10.3     3e-06    0.0023      60     138 ..      23     101 ..      16     106 .. 0.94
   2 ?    3.1   0.1      0.12        91     112     135 ..     113     136 ..     103     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3e-06
        ADIP  60 etirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqiktqyahelkk 138
                 ++ +++  ++er + +ier k+qle+l+++  + ++++r++   l++    l +++ el+r+   +++i  q++  lk 
  CCG91275.1  23 QQAQEILLDLERRKEEIERQKKQLEELRQKQRTFEEDHRTAVDLLTRGLVLLERQAGELKRQLEEIESIHSQFSDQLKA 101
                 567778889****************************************************************999985 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.12
        ADIP 112 knekeelqrlknalqqiktqyahe 135
                 +n+ +el++   +++q kt ya++
  CCG91275.1 113 MNLEDELNKALVTVEQAKTIYAQY 136
                 6899***************99886 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   7.1   6.3e-06    0.0049     811     928 ..      33     149 ..      18     174 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.3e-06
     DUF3584 811 dslaeerpalkeqveelesaaeeleqeltrliedtklerkklekerkalekqldqldenlrklrdllskl.aelkldadaeqaegelaerlaaleelkr 908
                 +  +ee ++ k+q+eel+++++  e++++++   +++ +  le+++  l+ ql++++  ++++ d l+++ +    ++d  ++e el++ l  +e++k+
  CCG91275.1  33 ERRKEEIERQKKQLEELRQKQRTFEEDHRTAVDLLTRGLVLLERQAGELKRQLEEIESIHSQFSDQLKAIeSIQPASWDPMNLEDELNKALVTVEQAKT 131
                 445666777788888888888888888888888888888888888888888888888888888888888855555778888888888888888888888 PP

     DUF3584 909 krerlsedvkkalerfkgvl 928
                 + ++ + +v    er+   +
  CCG91275.1 132 IYAQYRDKVGSVTERLA--I 149
                 88888888888877776..4 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9   4.3   1.3e-05      0.01      11      95 ..      24     102 ..      12     109 .. 0.69
   2 ?   -2.2   0.0       4.9   3.8e+03      45      61 ..     124     140 ..     111     154 .. 0.51

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHH CS
  Laminin_II  11 takevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnisei 95 
                 +a+e+l +l+  ++++e+ k++l+e++++ ++t e  +d  +a+++  r  + Le++a +L  +l+e++  +++    sd+++ i
  CCG91275.1  24 QAQEILLDLERRKEEIERQKKQLEELRQK-QRTFE--EDHRTAVDLLTRGLVLLERQAGELKRQLEEIESIHSQ---FSDQLKAI 102
                 33333334444445566666666666666.33333..39999***************************98888...66666655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.9
                 XXXXXXXXXXXXXXXXX CS
  Laminin_II  45 ekvkdankairdArrsv 61 
                   v++a+++ ++ r++v
  CCG91275.1 124 VTVEQAKTIYAQYRDKV 140
                 33334444444434443 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9  16.2   2.7e-05     0.021      33     115 ..      18     104 ..      15     127 .. 0.87
   2 ?    0.1   0.2      0.96   7.5e+02      36      68 ..     115     147 ..     104     158 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.7e-05
  CENP-F_leu_zip  33 lemseenqekvileaEtskaevetlkeeieelaeelreleld....LvalrsekeeLekelqkkqervseLeslnsslenlleekEq 115
                     l++  ++ +++ l+ E  k+e+e  k+++eel+++ r +e d    ++ l++    Le++  + +++ +e es++s+++ +l+  E 
      CCG91275.1  18 LNIKVQQAQEILLDLERRKEEIERQKKQLEELRQKQRTFEEDhrtaVDLLTRGLVLLERQAGELKRQLEEIESIHSQFSDQLKAIES 104
                     66667788899****************************987333366788*******************************99886 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.96
  CENP-F_leu_zip  36 seenqekvileaEtskaevetlkeeieelaeel 68 
                     +e +++k+ + +E++k    + ++++   +e+l
      CCG91275.1 115 LEDELNKALVTVEQAKTIYAQYRDKVGSVTERL 147
                     566777777777777777777777776666665 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   4.6      0.22   1.7e+02     123     145 ..      30      52 ..      17      58 .. 0.74
   2 ?   12.9   0.1     7e-05     0.054     119     194 ..     113     189 ..     109     191 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.22
     DUF4349 123 reLsevqaeieslegqlryLdnq 145
                  +L+++++eie+ ++ql++L+++
  CCG91275.1  30 LDLERRKEEIERQKKQLEELRQK 52 
                 56888888888888888888764 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 7e-05
     DUF4349 119 leiereLsevqaeieslegqlryLdnqvaystvtvtlrepeaeteaeeee.gegflealsggwnalveflagllvvl 194
                 +++e+eL++     e++++  ++++++v   t ++ ++e+++e+e+ +   +++++++++ ++  ++ +lag+++++
  CCG91275.1 113 MNLEDELNKALVTVEQAKTIYAQYRDKVGSVTERLAIEEEVEEEEEVPFRfWNKVMSGFAYSLPLILVLLAGMVIWV 189
                 67899************************************9998887779999********999999999999997 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.0   0.00013       0.1       9     111 ..      13     121 ..       7     184 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
  V_ATPase_I   9 vqfrDlnedvnafqrkfvkevrrcdemerklrfleeeieklekavikeeea...........eesleapeekeldeleeelekleeelkelnenleklk 96 
                   + Dln +v++ q    +  rr +e+er+ + lee  +k+++ +  ++ +            e+++ + +++l+e+e+  +++ ++lk +++ + +  
  CCG91275.1  13 FSIDDLNIKVQQAQEILLDLERRKEEIERQKKQLEELRQKQRTFEEDHR-TavdlltrglvlLERQAGELKRQLEEIESIHSQFSDQLKAIESIQPASW 110
                 567899999999999999999************9999999444444443.3477777766554444444444444444444444444444444333333 PP

  V_ATPase_I  97 kelnelvelkavlek 111
                 + +n     +  l+k
  CCG91275.1 111 DPMNL----EDELNK 121
                 32222....222222 PP

>> stn_TNFRSF12A  Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.41   3.2e+02      14      51 ..      66     103 ..      58     124 .. 0.77
   2 ?    8.8   0.0    0.0022       1.7      73     101 ..     159     188 ..     127     191 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.41
  stn_TNFRSF12A  14 vlGlglallraaaGeqapGaaplsrGsswsadldklik 51 
                    +l  gl+ll+  aGe      ++ + +s+ +d+ k+i+
     CCG91275.1  66 LLTRGLVLLERQAGELKRQLEEIESIHSQFSDQLKAIE 103
                    45668999*******99988888887777777666555 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0022
  stn_TNFRSF12A  73 asfrllwpilGG.alslalvlgllsGflvw 101
                     +fr+   ++ G a sl l+l ll+G+++w
     CCG91275.1 159 VPFRFWNKVMSGfAYSLPLILVLLAGMVIW 188
                    57887777775549**************** PP

>> SPAM  Salmonella surface presentation of antigen gene type M protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7  12.3   5.3e-05     0.042      19      98 ..      21      99 ..      16     111 .. 0.87
   2 ?   -2.4   0.0       4.8   3.7e+03      79     101 ..     118     140 ..     112     151 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.3e-05
        SPAM 19 allqlkdeereldkeeeaieeqragLkeLLdlqrpegksldreelyallrkqaivrrqlkeLeLqlvaiqekrselqkek 98
                 + q ++   +l++++e+ie q+++L eL + qr+ ++  +r+ +  l r + ++ rq  eL+ ql +i+  +s++ ++ 
  CCG91275.1 21 KVQQAQEILLDLERRKEEIERQKKQLEELRQKQRTFEE-DHRTAVDLLTRGLVLLERQAGELKRQLEEIESIHSQFSDQL 99
                4556666667899*********************9887.68999*9*************************999998875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.8
        SPAM  79 eLeLqlvaiqekrselqkekeel 101
                 eL+  lv++++ ++ + + ++++
  CCG91275.1 118 ELNKALVTVEQAKTIYAQYRDKV 140
                 56666666666666666666665 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   7.9      0.16   1.3e+02      20      57 ..      15      63 ..       9     160 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.16
     NPV_P10 20 VdalqqqvddvqenlpdvtelnekLdaqsaqLaelet...........k 57
                +d l+ +v++ qe l d++  +e++++q +qL+el +           +
  CCG91275.1 15 IDDLNIKVQQAQEILLDLERRKEEIERQKKQLEELRQkqrtfeedhrtA 63
                4556666666666666666666667777777777666333333344440 PP

>> YnfE  Uncharacterized YnfE-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.2   0.00046      0.36      28      62 ..      31      65 ..      24      75 .. 0.82
   2 ?    0.8   0.1      0.76   5.9e+02      28      46 ..      80      98 ..      74     133 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00046
        YnfE 28 DlekqkeqlelYekqLkqesssdedfDevvdavvk 62
                Dle++ke++e+ +kqL++    +  f+e   ++v+
  CCG91275.1 31 DLERRKEEIERQKKQLEELRQKQRTFEEDHRTAVD 65
                9***************9988888877776655555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.76
        YnfE 28 DlekqkeqlelYekqLkqe 46
                +l++q e++e    q  ++
  CCG91275.1 80 ELKRQLEEIESIHSQFSDQ 98
                5788999998654443332 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.7   0.00098      0.76      27      65 ..      14      52 ..       2      61 .. 0.90
   2 ?    3.7   0.4     0.082        64      38      62 ..      81     105 ..      74     108 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00098
        Med9 27 ktgelrhkLkkarelirelpgidrsveeqeaeieeleeq 65
                ++++l+ k ++a e +  l+   + +e q++++eel+++
  CCG91275.1 14 SIDDLNIKVQQAQEILLDLERRKEEIERQKKQLEELRQK 52
                6899*********************************86 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.082
        Med9  38 arelirelpgidrsveeqeaeieel 62 
                  + +++e++ i     +q++ ie+ 
  CCG91275.1  81 LKRQLEEIESIHSQFSDQLKAIESI 105
                 6899999999999999999999976 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.8   0.00047      0.37      28      77 ..      16      65 ..       4      73 .. 0.91
   2 ?    3.2   0.8      0.09        70      25      89 ..      86     153 ..      72     158 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00047
  Phage_GP20 28 dtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakia 77
                d+l+ +++++++ L dL+  +++ e  +kq+eel +k  + ++++ + + 
  CCG91275.1 16 DDLNIKVQQAQEILLDLERRKEEIERQKKQLEELRQKQRTFEEDHRTAVD 65
                789999**************************************988765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.09
  Phage_GP20  25 eerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkak...aeyeakiadlkldnaielaL 89 
                 ee +++ +q  d+ k +e ++ ++ d  +L+ ++++   ++++ak   a+y  k+  ++   aie++ 
  CCG91275.1  86 EEIESIHSQFSDQLKAIESIQPASWDPMNLEDELNKALVTVEQAKtiyAQYRDKVGSVTERLAIEEEV 153
                 45566666777777777777777777777777777776666665511145555666666666666655 PP

>> DASH_Dad2  DASH complex subunit Dad2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.4      0.39     3e+02      11      41 ..      29      59 ..      19      69 .. 0.70
   2 ?   11.1   0.4   0.00052      0.41      15      72 ..      72     139 ..      67     180 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.39
   DASH_Dad2 11 LeaLkqlrdlsdslakqleeLeeklstladg 41
                L +L++ ++  ++ +kqleeL +k +t ++ 
  CCG91275.1 29 LLDLERRKEEIERQKKQLEELRQKQRTFEED 59
                5556666666677789999999999888765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00052
   DASH_Dad2  15 kqlrdlsdslakqleeLeeklstladgteavasVl.anWqnvl.........raismaslkllqkaee 72 
                   l+ ++++l++qlee+e   s+ +d  +a++s+  a+W+             ++++a++  +q++++
  CCG91275.1  72 VLLERQAGELKRQLEEIESIHSQFSDQLKAIESIQpASWDPMNledelnkalVTVEQAKTIYAQYRDK 139
                 56788999************************996467876655555554444555555555555544 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   6.0   0.00056      0.44       5      65 ..      22      98 ..      20     111 .. 0.70
   2 ?    1.1   0.2      0.83   6.5e+02       8      44 ..     119     155 ..     113     171 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00056
     DUF2203  5 leeAnalLpllkelleelralrkeleeleeeleeakaeaekse................aaeleaeleeleaeieel 65
                +++A+++L  l+++ ee+ +++k+leel+++ ++ +++ ++                   +++ +e+e++ +++++ 
  CCG91275.1 22 VQQAQEILLDLERRKEEIERQKKQLEELRQKQRTFEEDHRTAVdlltrglvllerqageLKRQLEEIESIHSQFSDQ 98
                79**************************9988888877655447866666665554443333334444444444444 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.83
     DUF2203   8 AnalLpllkelleelralrkeleeleeeleeakaeae 44 
                  n+ L ++++  + +++ r+++ ++ e+l+ +++ +e
  CCG91275.1 119 LNKALVTVEQAKTIYAQYRDKVGSVTERLAIEEEVEE 155
                 4666666666666666666666666665554444433 PP

>> CAMSAP_CC1  Spectrin-binding region of Ca2+-Calmodulin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   8.3    0.0002      0.16      15      45 ..      24      54 ..      16      56 .. 0.91
   2 ?   -2.1   0.2       4.5   3.5e+03      18      25 ..      80      87 ..      74      94 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
  CAMSAP_CC1 15 elselrlkLEEKRRaIEaqKrkiEaalarqR 45
                + +e+ l LE ++  IE+qK+++E++ ++qR
  CCG91275.1 24 QAQEILLDLERRKEEIERQKKQLEELRQKQR 54
                77899999**********************9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.5
  CAMSAP_CC1 18 elrlkLEE 25
                el+ +LEE
  CCG91275.1 80 ELKRQLEE 87
                55556665 PP

>> FliD_N  Flagellar hook-associated protein 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   7.2      0.25     2e+02      20      51 ..      29      60 ..      13     158 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.25
                XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHH CS
      FliD_N 20 ldkleqkktklewkqsayrelnsklsnlksal 51
                l  le++k+++e +++ ++el++k ++++++ 
  CCG91275.1 29 LLDLERRKEEIERQKKQLEELRQKQRTFEEDH 60
                34499999999999999999999999999854 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.2    0.0083       6.5      36      79 ..      15      58 ..       3      62 .. 0.84
   2 ?    7.3   0.3    0.0076       5.9      39      71 ..      74     106 ..      72     109 .. 0.87
   3 ?    0.7   0.2      0.87   6.8e+02      39      69 ..     115     145 ..     112     159 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0083
     BLOC1_2 36 ykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLee 79
                +++l+ +++++++ l +l++++ee++ +++q++++ ++ +++ee
  CCG91275.1 15 IDDLNIKVQQAQEILLDLERRKEEIERQKKQLEELRQKQRTFEE 58
                478999999***************************99888886 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0076
     BLOC1_2  39 lkdvaaslekkleklnekyeelqpylqqidqie 71 
                 l+++a +l+++le++++ + +++ +l+ i+ i+
  CCG91275.1  74 LERQAGELKRQLEEIESIHSQFSDQLKAIESIQ 106
                 567889999999999999999999999999986 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.87
     BLOC1_2  39 lkdvaaslekkleklnekyeelqpylqqidq 69 
                 l+d+++++ +++e+ +  y++ + ++ ++ +
  CCG91275.1 115 LEDELNKALVTVEQAKTIYAQYRDKVGSVTE 145
                 5666666666677777766666666665543 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   9.0    0.0062       4.8     329     406 ..      14      90 ..       5     103 .. 0.81
   2 ?    7.0   0.4    0.0025       1.9     338     409 ..      77     148 ..      59     159 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0062
        FapA 329 gldepelkekl.keleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelke 406
                 ++d +++k ++ +e+  +le+ +ee+e+ kk++++l++  ++  +e++++  ++ l++ +  l+++  el+++l+e+++
  CCG91275.1  14 SIDDLNIKVQQaQEILLDLERRKEEIERQKKQLEELRQ--KQRTFEEDHRTAVDLLTRGLVLLERQAGELKRQLEEIES 90 
                 45555556555688888899999999999999999999..45679***************9999999999999998875 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0025
        FapA 338 klkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeele 409
                 +  el+++lee+e+   +  +++k +++++  +  +++ +++l+k+l t e+ k+++++ +++  ++ e+l+
  CCG91275.1  77 QAGELKRQLEEIESIHSQFSDQLKAIESIQPASWDPMNLEDELNKALVTVEQAKTIYAQYRDKVGSVTERLA 148
                 33688899999988888888888888887777778999999*******999999999999998888777765 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.2      0.01       7.9      17      45 ..      30      58 ..      22      78 .. 0.87
   2 ?    1.3   0.2      0.38     3e+02      14      32 ..      76      94 ..      66     107 .. 0.46

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.01
                XHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC 17 laykqlkqeiaalqaelaklkaeneeLea 45
                l++ + k+ei++++++l++l+++++  e+
  CCG91275.1 30 LDLERRKEEIERQKKQLEELRQKQRTFEE 58
                678899*****************988776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.38
                XXXXHHHHHHHHHHHHHHH CS
       DivIC 14 kgllaykqlkqeiaalqae 32
                ++   +k++ +ei+ +  +
  CCG91275.1 76 RQAGELKRQLEEIESIHSQ 94
                3333333333333333333 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  17.4      0.03        23     134     266 ..      22     156 ..      19     160 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.03
        Spc7 134 mqllegLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkk...elaelqeql 229
                  q  +++   le++ e++e++k++Le+ +++  ++ ++ ++  + l++ l  l+++a el+  + ee+e+++++++++ + ie+ +    +  +l+++l
  CCG91275.1  22 VQQAQEILLDLERRKEEIERQKKQLEELRQKQRTFEEDHRTAVDLLTRGLVLLERQAGELKR-QLEEIESIHSQFSDQLKAIESIQPaswDPMNLEDEL 119
                 56778899999999999999999999999999999999999999*********999999876.8999*********99999999886222457788888 PP

        Spc7 230 eeleekieelkeqkseleeeiaeaervleeckgwses 266
                 ++   ++e++k+ ++++++++ +  + l  +++++e+
  CCG91275.1 120 NKALVTVEQAKTIYAQYRDKVGSVTERLAIEEEVEEE 156
                 8888888888888888888887766666666555554 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  11.7   0.00062      0.48      16      93 ..      23     103 ..      17     106 .. 0.83
   2 ?   -1.2   0.3       4.1   3.2e+03      55      68 ..     127     140 ..     113     159 .. 0.40

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00062
  HIP1_clath_bdg  16 svarqaqeeverekkelee...elerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLq 93 
                     ++a++   ++er k+e+e+   +le+l+++++  +e+ ++ ++ L r l   + +  +lk  Le+ e   +q s ql+a++
      CCG91275.1  23 QQAQEILLDLERRKEEIERqkkQLEELRQKQRTFEEDHRTAVDLLTRGLVLLERQAGELKRQLEEIESIHSQFSDQLKAIE 103
                     4455555599*****99862225777777777778899***************************************9987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 4.1
  HIP1_clath_bdg  55 ekLkreleakrael 68 
                     e+ k+  ++ r+++
      CCG91275.1 127 EQAKTIYAQYRDKV 140
                     22222233333333 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   9.0     0.021        17      79     124 ..      21      70 ..       9     101 .. 0.65
   2 ?    1.2   0.3       0.2   1.5e+02      30      95 ..      80     145 ..      68     152 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.021
       Atg14  79 lrerlqelkdklsqlkkeieekkkklaklsdklk.....kRrsdleslqne 124
                 + ++ qe+  +l+++k+eie +kk+l++l++k       +R++  ++l+  
  CCG91275.1  21 KVQQAQEILLDLERRKEEIERQKKQLEELRQKQRtfeedHRTAV-DLLTRG 70 
                 4567889999********************99876666533332.333333 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.2
       Atg14  30 rlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkk 95 
                 +l++ ++e es+ +++++ l+  e+ + ++++ +n+ + l++   ++++ +   ++ +dk+ + ++
  CCG91275.1  80 ELKRQLEEIESIHSQFSDQLKAIESIQPASWDPMNLEDELNKALVTVEQAKTIYAQYRDKVGSVTE 145
                 556666666777777777777777667777777777777777777777776666666666655555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   5.4     0.035        27      48     124 .]      30     106 ..      21     106 .. 0.80
   2 ?    2.2   0.0      0.22   1.7e+02      64     104 ..     115     154 ..     112     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.035
     DUF1664  48 kqleqvseslaatkrhLssridrvdkklde.qkeiskeikeevtevredlseigedvesvkeaveglesklerieekQ 124
                  +le+ +e+++++k++L++   + +++ +e    +   +++ +  ++++  e+++++e+++++ +++  +l+ ie+ Q
  CCG91275.1  30 LDLERRKEEIERQKKQLEEL-RQKQRTFEEdHRTAVDLLTRGLVLLERQAGELKRQLEEIESIHSQFSDQLKAIESIQ 106
                 57899999999999999765.5555555550556667889999999*************************9999876 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.22
     DUF1664  64 Lssridrvdkkldeqkeiskeikeevtevredlseigedve 104
                 L++++++   ++++ k i ++ +++v +v e l+ i+e+ve
  CCG91275.1 115 LEDELNKALVTVEQAKTIYAQYRDKVGSVTERLA-IEEEVE 154
                 6677777778899999999999999999998874.566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2315  (0.12912); expected 358.6 (0.02)
Passed bias filter:                      979  (0.0546043); expected 358.6 (0.02)
Passed Vit filter:                       136  (0.00758548); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 1236.96
//
Query:       CCG91276.1  [L=532]
Description: Site-specific DNA-methyltransferase (Adenine-specific) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-111  372.8   0.0   1.8e-111  372.3   0.0    1.1  1  N6_Mtase  N-6 DNA Methylase
    2.4e-27   96.2   0.1    4.3e-27   95.4   0.1    1.4  1  HsdM_N    HsdM N-terminal domain
     0.0014   18.2   0.0     0.0061   16.1   0.0    2.0  1  MTS       Methyltransferase small domain
  ------ inclusion threshold ------
      0.053   13.2   0.0       0.14   11.8   0.0    1.7  1  UPF0020   Putative RNA methylase family UPF0020
      0.092   12.2   0.2       0.22   11.0   0.2    1.7  1  AviRa     RRNA methyltransferase AviRa


Domain annotation for each model (and alignments):
>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.3   0.0  5.1e-115  1.8e-111       2     310 ..     158     490 ..     157     492 .. 0.98

  Alignments for each domain:
  == domain 1  score: 372.3 bits;  conditional E-value: 5.1e-115
    N6_Mtase   2 skdllGdvYEyllrkfaeeegksgGeffTPrevsklivellepksgesvyDpacGsggllvqaekvlkee.......dgktkelsiyGqeknettyrLa 93 
                 skd+lG++YEy+l++fa++e+k+gGef+TPr v+kl+ve+lep++g+ vyDp+cGs+g++vq+ ++++++        + + ++siyGqe+n tt+rLa
  CCG91276.1 158 SKDVLGRIYEYFLSQFASAEKKKGGEFYTPRCVVKLLVEMLEPYRGR-VYDPCCGSAGMFVQSVEFIRAHasgngngGKAKGNISIYGQESNYTTWRLA 255
                 79********************************************8.**********************9999997778899**************** PP

    N6_Mtase  94 kmNlllhgieykkvkirlgdtlekpkfekdkkfdvvvaNppfnqkewkektlekderfreavapksnadlafllhiieslkpkGraavvlangvLfr.g 191
                 kmNl+++gi+ k   i++gdt+++++f  d k+d+++aNppfn ++w  ++l  d+r++++v+p++na++a+++hi+++l+p+G+a++vlang++++ +
  CCG91276.1 256 KMNLAIRGIDGK---IEHGDTFHEDRFP-DLKADFILANPPFNMSDWGGDRLRGDKRWQYGVPPAGNANFAWVQHIVYHLAPNGTAGIVLANGSMSSnQ 350
                 ************...*************.*******************************************************************977 PP

    N6_Mtase 192 gkegkIrkalvekdlveavialpeklFyntsiptcilvlkkekae.....rkgkvlfidaseefkkkdrkknklteediekildtykek.......... 275
                   e +Irkalv++dlv++++alp +lFy+t+ip+c+++l++++++     r+g+vlfida++   + dr +++lt+ di+ki+ +y+ +          
  CCG91276.1 351 LGESEIRKALVKADLVDCMVALPGQLFYSTQIPACLWFLARDRKNhkfrdRRGEVLFIDARKLGFMADRTHRELTNADIAKIAGMYHLWrgeknvptea 449
                 89*****************************************9899*99************************************************* PP

    N6_Mtase 276 ......skevdkfskvveleeiaendynlnvgryveteeee 310
                       +k++++f+k ++leei++  ++l++g+yv+++ +e
  CCG91276.1 450 vdglivYKDIPGFCKAAKLEEIEKHGFVLTPGHYVGAAPQE 490
                 ***********************************998776 PP

>> HsdM_N  HsdM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.1   1.2e-30   4.3e-27       2     137 .]      18     146 ..      17     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 1.2e-30
                 HHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHHHHHHHHHCC.......--..--------....S-CCCSHHHHHHS--HHHHHHHHHHCHHHHCT CS
      HsdM_N   2 esklwkaadiLRgkvdaseykeyilgLlFlKrlddveeereeklleeykenaleeleeklkskeafyipeelrWkelakkkdddelgenlnkafpalee 100
                 e+ lw++ad+LRg++da+eyk ++lgL+FlK+++d +ee+ ++l++e+++ a+ e  +++++++ f++p+++rW++++ ++++  +g+ +++a+ ++e+
  CCG91276.1  18 EDELWRMADKLRGSMDAAEYKHVVLGLIFLKYISDAFEEKHAALEAEKDQGADPEDPDEYRAENIFWVPPKARWSRIKVQARQATIGQLIDDAMVEIER 116
                 578**********************************99999995554444556678899999***************9988889************** PP

                 --STHHHHHHHS......S-----SSHHHHHHHHHHH CS
      HsdM_N 101 lnkslkgvfmkddfnafalgeitkkspalLskviekf 137
                 +n++lk+v+  +d+ +         ++ +L ++i+ +
  CCG91276.1 117 DNPALKDVLP-KDYGRP------ALDKTRLGQLIDLI 146
                 *********6.534444......57888999999876 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.7e-06    0.0061      51     108 ..     235     294 ..     190     299 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.7e-06
                 HHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTT..STTS-EEEEEE---ST CS
         MTS  51 kespeaevtlvdvdarAlesakenleanklevevvasdvlee..veekkfdlivsNPPfh 108
                 k++ ++++   + ++   ++ak nl+  ++++++ + d ++e  +++ k d+i+ NPPf 
  CCG91276.1 235 KAKGNISIYGQESNYTTWRLAKMNLAIRGIDGKIEHGDTFHEdrFPDLKADFILANPPFN 294
                 4566788899999*************************9865226699***********7 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     4e-05      0.14      31     131 ..     204     293 ..     194     300 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4e-05
                 -EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE-- CS
     UPF0020  31 pllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnp 129
                 + +DP CGs ++ +      +  a g+              +a+ ++++yg +++    + a+ N+   g++++ie  +  + +   ++ + d i++np
  CCG91276.1 204 RVYDPCCGSAGMFVQSVEFIRAHASGNG----------NGGKAKGNISIYGQESNYTTWRLAKMNLAIRGIDGKIEHGDTFHEDRF-PDLKADFILANP 291
                 5789999998888877777777775555..........2334557789*****************************998777644.67789******* PP

                 -- CS
     UPF0020 130 PY 131
                 P+
  CCG91276.1 292 PF 293
                 *9 PP

>> AviRa  RRNA methyltransferase AviRa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   6.1e-05      0.22      56      68 ..     204     216 ..     186     277 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.1e-05
       AviRa  56 tlyDpCCGgayLl 68 
                 ++yDpCCG+a + 
  CCG91276.1 204 RVYDPCCGSAGMF 216
                 79*******9664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 3302.12
//
Query:       CCG91277.1  [L=434]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-38  131.1   0.0    3.7e-37  128.1   0.0    2.1  2  Methylase_S  Type I restriction modification DNA specificity 


Domain annotation for each model (and alignments):
>> Methylase_S  Type I restriction modification DNA specificity domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1   0.0   2.1e-41   3.7e-37       2     168 .]       3     180 ..       2     180 .. 0.97
   2 ?    0.8   0.0     0.029   5.2e+02      81     138 ..     316     375 ..     228     396 .. 0.59

  Alignments for each domain:
  == domain 1  score: 128.1 bits;  conditional E-value: 2.1e-41
                  TT-EEEEHHHHEEEEE-----TT.GGTTT--EEEE-HHHCCT...........EE-HHHHCCTT---B-TT-EEEE-SSSTT-EEEESS-BEE-TTEE CS
  Methylase_S   2 edwevvkLgdvfeikkgktpkkk.elkengkypyiragilnn...........kvvkdglgykkkyilpkgdilissratiGkvayrdkkyylnqsvi 87 
                  ++w ++++g+++ei +g tp++    ++ng++p++++++l++           + +++gl+ +++ +lp g++l++sra+iG+va+++ ++ +nq+++
   CCG91277.1   3 SEWREYRIGEIAEIVGGSTPSTAdPSNFNGEIPWLTPKDLSGpheryvsrgerNLSRKGLESCSAQQLPVGTVLLTSRAPIGYVAIAKTPLATNQGFR 100
                  69*********************999************************************************************************ PP

                  EEEESTTT--HHHHHHHHHHCHHHHHHHCCSSTTT---HHHHCC-EEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Methylase_S  88 vlipknkkkineflylylllklkklkslsvgstqpkltkenlkkikIplPpleeQkkIakiLsqldntielekkikneier 168
                   lipk+   ++ fly++l ++ ++l+++  gst+++lt + l++i I lP l eQ  Ia+iL +ld++iel+++ ++++e+
   CCG91277.1 101 NLIPKPG-FDSDFLYYWLRAHDEELQRHASGSTFQELTGSALAQIRIRLPLLAEQRAIAHILGTLDDKIELNRRMNETLEE 180
                  *****94.4459*****************************************************************9985 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.029
                  EE-TTEEEEEESTTT--HHHHHHHHH...HCHHHHHHHCCSSTTT---HHHHCC-EEEE-- CS
  Methylase_S  81 ylnqsvivlipknkkkineflylyll...lklkklkslsvgstqpkltkenlkkikIplPp 138
                  + ++++ivl++++   +    yl+     +  +++ s ++ s++++++ + ++ +++p P 
   CCG91277.1 316 WGSTEFIVLRSRPPLPK-AVAYLIARdpaFRANAIRSMTGTSGRQRVSSDAIAAYPLPQPE 375
                  66666777776652222.3344444355555567777788888888888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2807.30
//
Query:       CCG91278.1  [L=1056]
Description: Type I site-specific deoxyribonuclease, HsdR family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.3e-135  450.4   0.4   6.3e-135  449.8   0.4    1.2  1  DUF3387    Domain of unknown function (DUF3387)
    1.8e-84  282.9   0.0    6.8e-84  281.0   0.0    1.9  2  SWI2_SNF2  SWI2/SNF2 ATPase
    7.1e-42  143.6   0.0    2.1e-40  138.7   0.0    3.0  3  HSDR_N     Type I restriction enzyme R protein N terminus (HS
    6.6e-16   58.8   0.0    1.7e-15   57.5   0.0    1.7  2  ResIII     Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.067   13.4   0.4       0.24   11.6   0.4    2.0  1  AAA_lid_6  AAA lid domain


Domain annotation for each model (and alignments):
>> DUF3387  Domain of unknown function (DUF3387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.8   0.4  1.8e-138  6.3e-135       2     329 ..     728    1052 ..     727    1054 .. 0.98

  Alignments for each domain:
  == domain 1  score: 449.8 bits;  conditional E-value: 1.8e-138
     DUF3387    2 ggkgkptedieeavavlkeklevvrellhgfdyskfftadpkeklellleaaehilsleegkkrFlklvkaLkkayalcapseeaeelrdevaffqa 98  
                  gg+g++t d+++avav++ek+ev+r+++hgfdy+++ t++p+e+l ll  a+e+il++e+g+kr++++v++L++a+al++p+e+a ++rd+v+ffqa
  CCG91278.1  728 GGRGQTTLDQKQAVAVMQEKYEVCRAMFHGFDYTRWITGTPQERLGLLPGAQEFILKQENGEKRYIDAVRELSRAFALAVPHEDALRIRDDVSFFQA 824 
                  799********************************************************************************************** PP

     DUF3387   99 vrailvKltaaeegkspdteeleaavrqlidkaiaseevvdifaaaglekpdisiLseefleevkkmkeknlavelLkklLadeikarsrkNlvksk 195 
                  v+a+l+K + +e+   p +eel++a+rq+i++aia e+vvdifaaagl+kpdisiLs+efl+ev+ +++++lavelL+klL+ e+k+rsrkN+v+++
  CCG91278.1  825 VQAALTKRAPSEA--RP-EEELDHAIRQIISRAIAPEGVVDIFAAAGLKKPDISILSDEFLAEVRGIPQRHLAVELLQKLLKGELKTRSRKNVVQAR 918 
                  *******998544..44.47***************************************************************************** PP

     DUF3387  196 kFserLeelikkYnnraltsaevieeLielakeikeekkrgeelgLseeElAFYdaLaenesavevmgddkLkelAkelvetvrknatiDWtkresv 292 
                  +F+e+Le++i++Y++ra++ ++vieeLi+lak i+ +++rge+lgLs++E+AFYdaL +n +av+v+gd++L+ +A+elv+tvr+n+tiDW++re+v
  CCG91278.1  919 SFREMLEQAIRRYQSRAIEVTQVIEELITLAKHIRMADERGERLGLSDDEMAFYDALGTNGNAVQVLGDETLRGIARELVKTVRDNVTIDWAIRENV 1015
                  ************************************************************************************************* PP

     DUF3387  293 rAklrvavkrlLrkygYPpdkqeeaveeVleQaella 329 
                  rAklrv vkr+Lrk+gYPpdkqe+a++ VleQae+l+
  CCG91278.1 1016 RAKLRVLVKRILRKHGYPPDKQEKATQIVLEQAEVLS 1052
                  **********************************986 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.0   0.0   1.9e-87   6.8e-84       1     223 [.     281     542 ..     281     543 .. 0.96
   2 ?   -1.5   0.1      0.45   1.6e+03      62     142 ..     899    1002 ..     896    1006 .. 0.51

  Alignments for each domain:
  == domain 1  score: 281.0 bits;  conditional E-value: 1.9e-87
   SWI2_SNF2   1 qQyravekavervke.............................gdrkgGviWHtqGSGKsltmvflakklle.eelknpkvvvvtDRkdLdkQlsktf 69 
                 +Q++av+ av+++ +                             gdr+ Gv+WHtqGSGKsltmvf+a ++++ ++++np+vvv+tDR+dLd+Ql++tf
  CCG91278.1 281 HQFYAVQLAVQETLRatalrtaqpkefdkesvlyqstrppagnpGDRRIGVVWHTQGSGKSLTMVFYAGRIIRePAMENPTVVVLTDRNDLDDQLFGTF 379
                 8***********99999**************************999**************************9559*********************** PP

   SWI2_SNF2  70 aka...geekpkqaesrkeLkellekesekiifttiqKfe.eeekeklevlsereniivlvDEaHRsqyg...elakklrkalpnaafigFTGTPilkk 161
                 +++    ++ p+qaesr++L++ll+ es++++fttiqKf   e+ +++++lser+ni+v++DEaHRsqy+   ++a+++r+alp+a+figFTGTPi+ k
  CCG91278.1 380 SRCqdlLRQPPVQAESRAHLRDLLSVESGGVVFTTIQKFFpGEKGDRCPTLSERRNIVVIADEAHRSQYDfidGFARHMRDALPHASFIGFTGTPIELK 478
                 **966558999****************************944467899*********************99999************************* PP

   SWI2_SNF2 162 dkktkevFgeyidkYtikeaveDgavvpilYesrlaklelkeeek..ldeefeeiteeleeeek 223
                 d +t+ vFg+yi+ Y+i+ av+Dga+vpi+Yesrlakl+l+e+e+  +d efee+te++e e+k
  CCG91278.1 479 DANTRVVFGDYISVYDIQSAVQDGATVPIYYESRLAKLALDESERpkIDLEFEEVTEREEIERK 542
                 ******************************************99899**********9998876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.45
   SWI2_SNF2   62 dkQlsktfakageekpkqaesrke.Lkelleke.sekiift.tiqKfe...eeek..................eklevl.sereniivlvDEaHRsq 133 
                  +k l++++++ ++++++qa+s +e L++ +++  s+ i +t +i+ +    +  +                  + +++l ++ + + vl DE  R  
  CCG91278.1  899 QKLLKGELKTRSRKNVVQARSFREmLEQAIRRYqSRAIEVTqVIEELItlaK--HirmadergerlglsddemAFYDALgTNGNAVQVLGDETLRGI 993 
                  5556677777777777777775541556665432555544414444433321..1333444555566665443222333133344667777777766 PP

   SWI2_SNF2  134 ygelakklr 142 
                    el k++r
  CCG91278.1  994 ARELVKTVR 1002
                  666666655 PP

>> HSDR_N  Type I restriction enzyme R protein N terminus (HSDR_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   0.0   5.9e-44   2.1e-40       2     193 ..      14     221 ..      13     222 .. 0.90
   2 ?    0.5   0.0      0.14   5.1e+02     138     169 ..     904     946 ..     861     980 .. 0.78
   3 ?   -1.1   0.0      0.42   1.5e+03      11      30 ..    1022    1041 ..    1016    1053 .. 0.76

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 5.9e-44
                 SSHHHHHH.HHHHHHHHTT-EE...............----SHHHHHHHHHHHHHHHH...........-HHHHHHHH.....TT--HHHHHHHHHTS. CS
      HSDR_N   2 lsEaeleqelidellrelGyqvlskkdveiegrrpevrkskaevaleknlreqlgaln...........ikkltkrla.....lsdgnkefyellkeg. 83 
                 lsE+++e+ +++++l+  G+qv ++ ++ + + + e r++  ev+l  +lr+ l +ln            +klt   +     l+++n++++ ++ +g 
  CCG91278.1  14 LSESTVET-AVMDWLEGVGWQVRHGIEIAPGQLGAE-RSDYCEVILSRRLRDGLDQLNpelpaealgdaFRKLT---HpegadLLQRNRTMHHMIVDGv 107
                 79**9999.**************9999998888888.99***********************999855544444...45559***************** PP

                 -EEEE....TS-EEEEESS-SSSGGGS-EEEEE----S.SSS---EEEEEEETTEEEEEEEE--T....T-HHHHHHHHTSS---.---SSSGGGGG-- CS
      HSDR_N  84 kvkfk....egrkknikLiDkknlenNrfqvvnQvtvt.gnqkrrpDivlfvnglplvviElKrp....gtieeAinQikryrkeksdvsipqlfrYlq 173
                 +v+++      r  ++++iD++n+enN++ +vnQ+tvt + ++rrpD+vlfvnglpl+viElK++    +ti++A++Q+++y+ e     +p lf+++ 
  CCG91278.1 108 TVEYRdhggAIRGAQVRVIDFDNPENNDWLAVNQFTVTeNRHTRRPDVVLFVNGLPLAVIELKNAadedATIWNALSQLETYQVE-----LPTLFATNG 201
                 ***665977777788999********************999************************88644*************88.....********* PP

                 EEEEE-SS-EEEEE--SSSG CS
      HSDR_N 174 fgvisngketrfyaktkrre 193
                  +vis+g+++r++a  ++re
  CCG91278.1 202 ALVISDGTQARVGAIGAGRE 221
                 ************99777766 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.14
                 EEE--T.......T.-HHHHHHH.HTSS---.---S..SSGGG CS
      HSDR_N 138 iElKrp.......g.tieeAinQ.ikryrkeksdvs..ipqlf 169
                  ElK +       + +++e ++Q i+ry+++ ++v   i++l 
  CCG91278.1 904 GELKTRsrknvvqArSFREMLEQaIRRYQSRAIEVTqvIEELI 946
                 5888888888775269999999999999998877776666665 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.42
                  HHHHHHHHTT-EE....... CS
      HSDR_N   11 lidellrelGyqvlskkdve 30  
                  l++ +lr++Gy  +++++ +
  CCG91278.1 1022 LVKRILRKHGYPPDKQEKAT 1041
                  8999*********9887644 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   4.7e-19   1.7e-15      21     170 ..     316     475 ..     281     476 .. 0.77
   2 ?   -3.8   0.0       3.2   1.1e+04      68      83 ..     925     940 ..     909     961 .. 0.61

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 4.7e-19
                 ..........TTSEEEEEESTTSTHHHHHHHHHHHH-S.......-EEEEESSHHHHHHHHHHGGGGTGG......GEEEESSS-B--.......-SEE CS
      ResIII  21 s........krdkrglikmaTGtGKTlvaaklierllkkgkee..kflflvprkslleqtleefkkflseayke..igkkvsgdkkkakekdstnkkil 107
                 s         +++ g+++++ G+GK+l+++  + r+ ++   e   +++l +r++l +q+  +f+++++  ++   + ++    ++     + ++  ++
  CCG91278.1 316 StrppagnpGDRRIGVVWHTQGSGKSLTMVFYAGRIIREPAMEnpTVVVLTDRNDLDDQLFGTFSRCQDLLRQPpvQAESRAHLRDLL---SVESGGVV 411
                 0555555534556788***************999999988777789******************999998877675444444444444...7899**** PP

                 EEEHHHHHHTH........HHHTTT-S.EEEEETGGGTTS...T.TTHHHHHT---SEEEEEESS-S CS
      ResIII 108 vttiqsldadseeeeeeseellrdrfd.viiiDEaHrlgak..k.swreilekfkeavllglTATpe 170
                 +ttiq++   +   + ++   l++r + v+i DEaHr++++  + + r+  +++++a  +g+T+Tp 
  CCG91278.1 412 FTTIQKFFPGE---KGDRCPTLSERRNiVVIADEAHRSQYDfiDgFARHMRDALPHASFIGFTGTPI 475
                 ***********...66666666665555************766347777999*************96 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.2
                 HHHHHHGGGGTGG... CS
      ResIII  68 eqtleefkkflseayk 83 
                 eq+++++++ + e ++
  CCG91278.1 925 EQAIRRYQSRAIEVTQ 940
                 4555555444444433 PP

>> AAA_lid_6  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   6.8e-05      0.24       3      43 ..     894     937 ..     893     951 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.8e-05
   AAA_lid_6   3 Aeevlrelle...rrrrdenfGNARfVRnllekairrqadRlat 43 
                 A+e l++ll+   + r ++n   AR  R +le+airr++ R ++
  CCG91278.1 894 AVELLQKLLKgelKTRSRKNVVQARSFREMLEQAIRRYQSRAIE 937
                 88999999999999999************************888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1056 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.46
# Mc/sec: 6856.13
//
Query:       CCG91279.1  [L=61]
Description: hypothetical protein MFUM_1020001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 448.15
//
Query:       CCG91280.1  [L=55]
Description: hypothetical protein MFUM_1020002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       141  (0.00786435); expected 358.6 (0.02)
Passed bias filter:                      101  (0.00563333); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 416.93
//
Query:       CCG91281.1  [L=108]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-42  141.4  10.0    1.1e-41  141.3  10.0    1.0  1  DMT_6     Putative member of DMT superfamily (DUF486)
  ------ inclusion threshold ------
      0.011   12.9   0.3      0.012   12.8   0.3    1.0  1  Nup192    Nuclear pore complex scaffold, nucleoporins 186/192
       0.15   12.3  12.8       0.23   11.6  12.8    1.4  1  EamA      EamA-like transporter family
       0.23   10.8   0.0       0.35   10.2   0.0    1.3  1  SAMP      SAMP Motif
          6    7.2   7.0       0.69   10.3   0.3    2.2  2  Comm      Commissureless


Domain annotation for each model (and alignments):
>> DMT_6  Putative member of DMT superfamily (DUF486)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3  10.0     3e-45   1.1e-41       1     105 []       3     106 ..       3     106 .. 0.99

  Alignments for each domain:
  == domain 1  score: 141.3 bits;  conditional E-value: 3e-45
       DMT_6   1 tilllilsnvfmtlAWyghLklkkkplllvilvsWgialfEYllqvpAnriGaeenlslaqlkiiqevitlvvfvlfsvlllkeklklnhlvaflllvl 99 
                 tillli+sn+fmtlAWy hLk+++kpl ++i++sWg+a+fEY++qvpAnriG+ + +s++qlk++qe+itl+vf+l++++++ke+ ++n ++a ll+++
  CCG91281.1   3 TILLLIISNIFMTLAWYLHLKFRHKPLPTAIMMSWGLAFFEYIFQVPANRIGSYS-FSVTQLKVLQECITLAVFTLLAWIIFKESPSWNLFIAYLLIIG 100
                 79****************************************************9.******************************************* PP

       DMT_6 100 avyfvf 105
                 av+f f
  CCG91281.1 101 AVFFAF 106
                 ****98 PP

>> Nup192  Nuclear pore complex scaffold, nucleoporins 186/192/205
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   3.4e-06     0.012     299     362 ..      23      86 ..       7      96 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.4e-06
                 ......HHHHHHHHHHHHHGGGHHHHHHHHHHHH..........HHHHHTTHHHHHHHHHHHHS CS
      Nup192 299 kwklkglkaaiklvflleligwckqepeertkkfdfkedieklieeaiedgafefllsvaaets 362
                 k   k+l  ai ++++l++ +++ q p +r+ ++ f+ +  k+++e+i+  +f+ l  ++++ s
  CCG91281.1  23 KFRHKPLPTAIMMSWGLAFFEYIFQVPANRIGSYSFSVTQLKVLQECITLAVFTLLAWIIFKES 86 
                 56679999***********************************************998888776 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  12.8   6.3e-05      0.23      38     135 ..       6     105 ..       1     107 [. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.3e-05
        EamA  38 fliagillliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnaslitsle.PvftlilsvlllgekltlkqllgivlillGvll 134
                 +li + +++ +a++   k+  k+ ++++     l+++  ++   +  ++  + s+++  +++  +  ++ ++l++++++e++++  +++ +li+ +v++
  CCG91281.1   6 LLIISNIFMTLAWYLHLKFrHKPLPTAIMMSWGLAFFEYIFQVPANRIGSYSFSVTQLKVLQECItLAVFTLLAWIIFKESPSWNLFIAYLLIIGAVFF 104
                 3444444444455555555448888999999999999999999999999999999*99999766505566899***********************998 PP

        EamA 135 i 135
                  
  CCG91281.1 105 A 105
                 6 PP

>> SAMP  SAMP Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   9.8e-05      0.35       9      17 ..      66      74 ..      65      74 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.8e-05
        SAMP  9 LqeCIgSAM 17
                LqeCI++A+
  CCG91281.1 66 LQECITLAV 74
                9*******7 PP

>> Comm  Commissureless
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   0.00019      0.69      16      38 ..       4      26 ..       2      38 .. 0.90
   2 ?    0.7   0.4      0.18   6.5e+02      14      28 ..      92     106 ..      86     107 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00019
        Comm 16 ltLlilslvFclcsCflyrkfrt 38
                + Lli+s +F+  + +l  kfr+
  CCG91281.1  4 ILLLIISNIFMTLAWYLHLKFRH 26
                579******************95 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.18
        Comm  14 ivltLlilslvFclc 28 
                  +  Lli++ vF+ +
  CCG91281.1  92 FIAYLLIIGAVFFAF 106
                 67889******9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.55
# Mc/sec: 596.35
//
Query:       CCG91282.1  [L=49]
Description: hypothetical protein MFUM_1020004 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 373.06
//
Query:       CCG91283.1  [L=648]
Description: acetyl-CoA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-93  312.9   0.0    3.1e-93  312.7   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    1.1e-29  103.2   0.1      2e-29  102.3   0.1    1.5  1  AMP-binding_C  AMP-binding enzyme C-terminal domain
    3.8e-20   71.6   2.6    3.8e-20   71.6   2.6    1.9  2  ACAS_N         Acetyl-coenzyme A synthetase N-terminus
  ------ inclusion threshold ------
      0.091   12.5   0.0       0.69    9.6   0.0    2.1  2  Peptidase_C28  Foot-and-mouth virus L-proteinase


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.7   0.0   6.8e-97   3.1e-93       7     422 ..      96     527 ..      89     528 .. 0.89

  Alignments for each domain:
  == domain 1  score: 312.7 bits;  conditional E-value: 6.8e-97
                  HSTTSEEEEE...CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE.. CS
  AMP-binding   7 ktpdkvalvd...sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli.. 99 
                  ++++k+al +    ge  ++TY+el ++v r+A++Lr++Gv+  d+V i++p  p+ ++++la++++Ga+++++ ++++a+ l   + ds+akv++  
   CCG91283.1  96 NRKNKTALLWegeFGERLSYTYQELSQEVARYANVLRRHGVNFSDTVIIFMPLIPQAIITMLACARIGAIHSVVFAGFSAKSLLERIVDSGAKVIVsa 193
                  5669999999888677889******************99*********************************************************99 PP

                  .....E.TCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS....-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEH.HHHH CS
  AMP-binding 100 .....a.tvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekae....kpeeeeelkpddlayiiYTSGTTGkPKGVmlsh.rnlv 185
                       + +   +   e+++ea +   + ++v++ ++ ++++ ++   +  + e++     + +e+++l+++++++i+YTSGTTGkPKGV++s+ ++lv
   CCG91283.1 194 dggfrRgK--IIPlKERVDEALKHTTQIQKVLLFKRTGAPTGWCHGRDY-WMEEEAslveNTCEPVSLDSEHPLFILYTSGTTGKPKGVVHSTgGYLV 288
                  88775232..455568888888888888888888988888776555444.4444424566889999***************************77778 PP

                  HHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCC CS
  AMP-binding 186 anvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvlealle.sgalkaakkakd 281
                  +++ s   +  f+l+edd +++++++ +i+g+++ +++ l++Ga+v ++++ ++ ++ +++++liek+k+t++++ P++++ +++    ++ + +++d
   CCG91283.1 289 QTAFSS--KIVFDLQEDDLYWCTADIGWITGHSYVVYGLLANGASVFIYEGAPDfPSYDRFWQLIEKYKITIFYTSPTAIRSFIKwG--PQ-WIEKHD 381
                  877775..45588999**************************************66688888***********************55..44.56788* PP

                  GTT-SEEEEESS-EBHHHHHHHHHHHTC...EEEEEEEEGGGSSECEE.CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEET..T CS
  AMP-binding 282 lsslrlvllggeplspellrffralfge...evlegYGlTEttgvvtv.lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgp..g 373
                  lsslrl+ ++gep++p++  +f++  g+   ++++++++TEt+ +++  lp +    k+gs+ +pl g+e ++vDe+ gep+p g+ G l++++p  +
   CCG91283.1 382 LSSLRLLGSVGEPINPDVFLWFYKNIGKekcPIVDTWWQTETGSILISpLP-KVTPMKPGSATFPLFGIEPEVVDEK-GEPMPAGKNGLLVIKKPwpS 477
                  ************************99999*****************77444.5555789****************98.****************9778 PP

                  S-SEBTT-HHHHHHHEEET.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 374 vmkgYlkkpeataeafdse.grwlrTGDlgrldedGyleivgRkkdlikl 422
                  + +g ++++e  ++ ++s  ++ + TGD ++ de+Gy++i+gR++d+i++
   CCG91283.1 478 MLRGIYRDEESFKKIYFSRiPGVYFTGDGAYKDEEGYFWIIGRIDDVINV 527
                  ***************9974668**************************98 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.1   4.5e-33     2e-29       1      76 []     536     614 ..     536     614 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 4.5e-33
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---.---..HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg.sea..leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+Esal+shpaVaeaaV+Gvpd  kGeal+afV+lk+g +++  le++Lk+hv ke+g++a+pk+++f+d+lpktrsGK
     CCG91283.1 536 ELESALISHPAVAEAAVIGVPDSEKGEALIAFVTLKEGwTSSldLENALKEHVVKEIGSIARPKEIRFIDALPKTRSGK 614
                    89**********************************99743358**********************************9 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   2.6   8.5e-24   3.8e-20       1      55 []      35      88 ..      35      88 .. 0.97
   2 ?   -3.4   0.1       2.2   9.9e+03      13      23 ..     345     356 ..     343     372 .. 0.62

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 8.5e-24
                HHHHHHHHHH-HHHHHHHHHCCS--SB--S-SECSTTTCT-EESTT-EE-HHHHH CS
      ACAS_N  1 ykelykeSiedpeaFWaeqakeldWekpfdkvldgskgpfikWFeGGklNicyNc 55
                y +lykeSi++pe FW+++ake+dW++p++kv dg + p+ +WF GGklN++yNc
  CCG91283.1 35 YFTLYKESIAHPELFWGNIAKEIDWFEPWTKVSDG-QFPHCQWFCGGKLNAAYNC 88
                6789*******************************.889**************** PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.2
                 HHHHHHHHCC.S CS
      ACAS_N  13 eaFWaeqake.l 23 
                 ++FW+ + k  +
  CCG91283.1 345 DRFWQLIEKYkI 356
                 789987666444 PP

>> Peptidase_C28  Foot-and-mouth virus L-proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00015      0.69     109     181 ..     265     336 ..     242     353 .. 0.87
   2 ?   -0.1   0.0      0.15   6.5e+02      91     129 ..     567     606 ..     558     611 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00015
  Peptidase_C28 109 hllytgigtasrpsevcmvdgtdmcladfhagiflkgqdhavfacvtsdgwyaiddedfypwtpnpadvlvfv 181
                    ++lyt  gt+ +p  v+   g  ++ + f + i++  q+  ++ c +  gw +     +y    n a v+++ 
     CCG91283.1 265 FILYTS-GTTGKPKGVVHSTGGYLVQTAFSSKIVFDLQEDDLYWCTADIGWITGHSYVVYGLLANGASVFIYE 336
                    567875.999*********************************************************999875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.15
  Peptidase_C28  91 glelheggppalvvwn.ikhllytgigtasrpsevcmvdg 129
                     + l+eg   +l + n +k  +   ig+ +rp e+ ++d+
     CCG91283.1 567 FVTLKEGWTSSLDLENaLKEHVVKEIGSIARPKEIRFIDA 606
                    567888888888776647889999***********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 4133.16
//
Query:       CCG91284.1  [L=313]
Description: AAA-type ATPase and DNA-binding domains, NtrC family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-40  139.2   0.2    1.5e-40  138.6   0.2    1.3  1  Sigma54_activat  Sigma-54 interaction domain
    1.1e-25   90.3   0.1    4.4e-25   88.4   0.1    2.0  1  Sigma54_activ_2  Sigma-54 interaction domain
    7.4e-08   32.1   0.3    2.1e-07   30.6   0.3    1.8  1  HTH_8            Bacterial regulatory protein, Fis family
    1.3e-05   25.2   0.0    6.4e-05   23.0   0.0    2.1  2  AAA_5            AAA domain (dynein-related subfamily)
    0.00024   20.6   0.8     0.0033   16.8   0.8    2.1  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0007   20.0   0.0     0.0014   19.1   0.0    1.5  1  AAA              ATPase family associated with various cellul
     0.0058   15.9   0.0      0.066   12.4   0.0    2.0  2  TIP49            TIP49 P-loop domain
     0.0097   15.5   0.0      0.026   14.1   0.0    1.7  1  HTH_50           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.039   14.3   0.1       0.18   12.2   0.1    2.1  2  AAA_16           AAA ATPase domain
      0.062   12.3   0.1       0.16   11.0   0.0    1.7  2  T2SSE            Type II/IV secretion system protein


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.2   8.4e-44   1.5e-40       1     168 []      13     175 ..      13     175 .. 0.91

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 8.4e-44
                      ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTT.....TSS-BEHHH CS
  Sigma54_activat   1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtG.....AekekkGlf 89 
                      +ig+s+  +el+++++ +a td +vli Ge+G+GKe++a+aih +s+r+ +pfv++ ca++p+el e e+FG   G F G     A   +kG+ 
       CCG91284.1  13 IIGKSRLAEELRRMVAIAAMTDQPVLISGETGSGKEIVAKAIHFSSSRAMHPFVSIHCASLPKELAENEIFG---GHFAGvesqrAVMGHKGKK 103
                      78999999***************************************************************8...5555511112555568999 PP

                      HHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEEE CS
  Sigma54_activat  90 ekadgGtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnvieie 168
                       +a gGtlfLD ++el+++lQ+kLlr+ +e+++++         ++riia+++e +e+++++g+fr+dL+yrlnvi+i+
       CCG91284.1 104 IEAIGGTLFLDGVEELDPSLQSKLLRLFEEEKITK-------ARSIRIIASSKETIEKNIQSGQFRKDLFYRLNVIRIH 175
                      9*****************************99976.......5679******************************985 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.1   2.5e-28   4.4e-25       1     138 []      14     179 ..      14     179 .. 0.93

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 2.5e-28
                      X---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-HHHHHHH.........................TT CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklpldlleq.........................ak 69 
                      +g+s++ +el++ ++ aa    pv++ Ge Gsgke+vA+++h +s++ +++fv +++a+lp++l e+                         a 
       CCG91284.1  14 IGKSRLAEELRRMVAIAAMTDQPVLISGETGSGKEIVAKAIHFSSSRAMHPFVSIHCASLPKELAENeifgghfagvesqravmghkgkkieAI 107
                      79***********************************************************999998888888888777777777777777779 PP

                      TSEEEEEE-TT--HHHHHHHHHHHHH...HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  70 ggtLylkdiadlskaeqkeLlellak...aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      ggtL+l ++++l++++q++Ll l ++    +  s+r++++s + +e+ +++g+f + L+++L  +r+h PpL
       CCG91284.1 108 GGTLFLDGVEELDPSLQSKLLRLFEEekiTKARSIRIIASSKETIEKNIQSGQFRKDLFYRLNVIRIHTPPL 179
                      *************************9555457899************************************8 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.3   1.2e-10   2.1e-07       2      42 .]     271     310 ..     270     310 .. 0.98

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.2e-10
                 HHHHHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHT CS
       HTH_8   2 leevEkelIeaALertgGnkskAArlLGisRrtLyrKLkkY 42 
                 lee+E++ I +AL+++   +s+AA+ LGi R  Ly KL+kY
  CCG91284.1 271 LEELEQMFIHKALAECP-TRSAAAKKLGIVRPLLYAKLRKY 310
                 8****************.**********************9 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.8   1.4e+03      11      23 ..      15      27 ..      14      33 .. 0.86
   2 !   23.0   0.0   3.6e-08   6.4e-05       1     103 [.      36     145 ..      36     193 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.8
                SHHHHHHHGGGGB CS
       AAA_5 11 gKselaerlaaal 23
                gKs+lae+l +++
  CCG91284.1 15 GKSRLAEELRRMV 27
                9*******99875 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 3.6e-08
                 EEEEE--SSSSHHHHHHHGGGGB......S--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG--HHHHHHHHHHH CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal......nreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEveraesevlnsLlsll 89 
                 +vl+ G++G+gK  +a+ +            +++   l++ + e++++g+     + ++ v +      +     g +l+lD+ve+++++ +++Ll+l+
  CCG91284.1  36 PVLISGETGSGKEIVAKAIHFSSsramhpFVSIHCASLPKELAENEIFGGHFAGVESQRAVMGHKG---KkieaIGGTLFLDGVEELDPSLQSKLLRLF 131
                 5899*************9865554444777788888999***********9975333333333333...344489************************ PP

                 HSSEEE..-SSSEE CS
       AAA_5  90 eerrllleeggelv 103
                 ee+++  + + + +
  CCG91284.1 132 EEEKITKARSIRII 145
                 ***99866555555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.8   1.9e-06    0.0033       9     140 ..      21     141 ..      15     148 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.9e-06
  Mg_chelatase   9 eeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkeeekllkrrpfraph.hsaskaalvGggskpkpGeisl 104
                   ee +r + iaa     +l+ G  GsGK ++ak+++      s++ ++   +i+  +     ++l ++  f        s+ a++G      +G+   
    CCG91284.1  21 EELRRMVAIAAMTDQPVLISGETGSGKEIVAKAIHF----SSSRAMHPFVSIHCASL---PKELAENEIFGGHFaGVESQRAVMGH-----KGKKIE 105
                   567999**************************9985....45555666666665444...44444444454333034578888884.....566678 PP

  Mg_chelatase 105 ahnGvLfLDElpefkrkvlevLRePledgevtisra 140
                   a  G LfLD + e++ +    L + +e++++t +r+
    CCG91284.1 106 AIGGTLFLDGVEELDPSLQSKLLRLFEEEKITKARS 141
                   999**************9999999999999998886 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   7.6e-07    0.0014       1     122 [.      37     159 ..      37     169 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 7.6e-07
                 EEEESSTTSSHHHHHHHHHHHHT...HEEEEEETTTCSSS..........STTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg...vefleisgsellsk..........yvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeerv 85 
                 vl++G  G GK ++aka+  +++    +f++i +++l ++          + g  +++  +  k  k +a     lf+D +++l +s            
  CCG91284.1  37 VLISGETGSGKEIVAKAIHFSSSramHPFVSIHCASLPKElaeneifgghFAGVESQRAVMGHKGKKIEA-IgGTLFLDGVEELDPSL----------- 123
                 799****************997655588********99669999*9998877777777777776656665.669**********9999........... PP

                 HHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHST CS
         AAA  86 vnqLlteldgvkkkeskvivigatnrpdkldpallrg 122
                 +++Ll+ ++++k  +++ i i+a+ + +++++ + +g
  CCG91284.1 124 QSKLLRLFEEEKITKARSIRIIASSK-ETIEKNIQSG 159
                 *************9888888888766.4566665544 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   3.7e-05     0.066      39      87 ..      23      72 ..       6      87 .. 0.82
   2 ?    1.4   0.0     0.083   1.5e+02     274     305 ..     103     134 ..      89     176 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.7e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX CS
       TIP49 39 ivelikekklaGravLlaGpsgtGktalaiaiskelg.edvpfvalsgse 87
                + +++    ++ + vL++G++g+Gk  +a ai  + + +  pfv++  + 
  CCG91284.1 23 LRRMVAIAAMTDQPVLISGETGSGKEIVAKAIHFSSSrAMHPFVSIHCAS 72
                5689999999*******************999988883456899998765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.083
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 274 kaeivpGvlfiDevhmlDiecfsylnralese 305
                 k e + G lf+D v  lD    s l r +e+e
  CCG91284.1 103 KIEAIGGTLFLDGVEELDPSLQSKLLRLFEEE 134
                 568899***********999999888888876 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.4e-05     0.026       7      49 ..     270     312 ..     266     313 .] 0.94

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
      HTH_50   7 yveefErelikkayekYpStRklAkrLGvShtaianklrkYgI 49 
                 ++ee E+  i ka+++ p    +Ak+LG+       klrkY+I
  CCG91284.1 270 ALEELEQMFIHKALAECPTRSAAAKKLGIVRPLLYAKLRKYDI 312
                 6899**************99999*******************9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1    0.0001      0.18       4      63 ..      15      73 ..      12     133 .. 0.76
   2 ?   -1.5   0.0       1.6   2.9e+03     139     161 ..     111     133 ..     108     145 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0001
      AAA_16  4 GReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                G+ +  e+L++++  +++ + + vl+sGe G+GK  ++++++ + +++   f++ +c +l
  CCG91284.1 15 GKSRLAEELRRMVAIAAMTD-QPVLISGETGSGKEIVAKAIHFSSSRAMHPFVSIHCASL 73
                67777788899998555555.68*************999999888888777788888877 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.6
      AAA_16 139 lvlDdlqwadeaslqllaaLlrl 161
                 l+lD ++ +d++ ++ l  L+++
  CCG91284.1 111 LFLDGVEELDPSLQSKLLRLFEE 133
                 79999999999666556666655 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.2e-05      0.16     111     149 ..      16      54 ..       1      63 [. 0.80
   2 ?   -2.0   0.0      0.81   1.5e+03      53      88 ..     143     180 ..     125     186 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.2e-05
       T2SSE 111 eealkekiaevlrkavrerglilvsGgTgsGKttllyal 149
                 + +l+e+++++++ a  + + +l+sG TgsGK +++ a+
  CCG91284.1  16 KSRLAEELRRMVAIAAMTDQPVLISGETGSGKEIVAKAI 54 
                 556677888888888889999***********9998775 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.81
       T2SSE  53 riaalakldiseerplqdarlp....ekgvrlrvvllPvv 88 
                 ri a++k++i  e+ +q++++      +   +r+ ++P+ 
  CCG91284.1 143 RIIASSKETI--EKNIQSGQFRkdlfYRLNVIRIHTPPLR 180
                 4555555555..4567888887544444455666677765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2193.35
//
Query:       CCG91285.1  [L=717]
Description: Periplasmic beta-glucosidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-73  248.3   0.0    1.5e-73  247.9   0.0    1.1  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    4.4e-50  170.5   0.0    6.8e-50  169.9   0.0    1.3  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    2.9e-19   68.9   0.0      5e-19   68.2   0.0    1.4  1  Fn3-like         Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.9   0.0   2.6e-77   1.5e-73       2     319 .]      23     328 ..      22     328 .. 0.98

  Alignments for each domain:
  == domain 1  score: 247.9 bits;  conditional E-value: 2.6e-77
                    HHHHHHHTEE-B-SE-S--HHHHHHHHHH--SEEE--GGGTSSHHHHHHHHHHHHHH-SS....S--EEEE---BTTB---SSS---S-HHHHHHH CS
  Glyco_hydro_3   2 ldekigqLlvvevseekkseeaaellkkyqvGgiilfaenledtkqleelieaarqaseksrlgiPlllavDqegGlvqrlgegtlfPsalalaat 97 
                    l+ekigqL++++ ++   see + l++k +vG+ ++        ++ +++++a+  as++ rl+iPll+a D+++G +      t+fP+++ala++
     CCG91285.1  23 LEEKIGQLVLLSPKDGMLSEELKTLIQKGKVGSFLN-------LTDPSQIEAAQLIASNRGRLQIPLLFAFDVLHGFK------TIFPIPIALASS 105
                    8**********************************9.......6999999999************************9......************ PP

                    T-HHHHHHHHHHHHHHHHHHT--EE---B-----STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHT......T-EEEEEEETTGTT-SSETTTSEE CS
  Glyco_hydro_3  98 ssldlikelgriiakelralgididfaPvvdvnrdprngigvrsFsedpelvaalaaamvkGlqga......gvaatvKHFpghGdgavdshkelp 187
                     +++li+ ++ ++ake+ra gi+++faP++dv rdpr+g+  +s +edp+l++ l +a +kG qg+       +aa+ KHF g+  gav+++++++
     CCG91285.1 106 MDPELIELVAHAAAKEARAFGIHLTFAPMLDVCRDPRWGRVAESPGEDPFLASLLSSAWIKGFQGKnlssssLLAACPKHFVGY--GAVEGGRDYN 199
                    ******************************************************************99999888999*******..9********* PP

                    B----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-...HHHHHHHHHHHT-S CS
  Glyco_hydro_3 188 tvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvvvsDalamkeiadrgg...keeavvlaLkAGvD 280
                     v++s++ l+e++l pf +a ++g+ + M+a   f a++g p +++++ll+++LRk++G++G v+sD+ a+ e+ ++g    +++av+la+++G+D
     CCG91285.1 200 SVTISHRLLQEIYLPPFLQAFKEGAFATMAA---FVAINGLPPAANPQLLKGLLRKDIGWEGPVISDWNAVRELVQHGItenEKTAVALAINSGID 292
                    *******************************...********************************************98888999********** PP

                    BEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHHHHHH CS
  Glyco_hydro_3 281 ilLvpeertseikalkkavkeGeltearidesvrrvlrl 319
                    i +v+  ++   ++l++++keG++ e+ ide++ rvl+l
     CCG91285.1 293 IDMVSGLYS---QYLEELLKEGKVKEETIDEAALRVLTL 328
                    ********8...************************986 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.9   0.0   1.1e-53   6.8e-50       1     204 []     368     599 ..     368     599 .. 0.95

  Alignments for each domain:
  == domain 1  score: 169.9 bits;  conditional E-value: 1.1e-53
                      -EEEEEGSS--S-S-STEEEEEESGGGS.SS-SS-BSSS----S---HHHHHHHHHHH..................-HHHHHHHHHHHTSEEEE CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C   1 iVLLkNennlLPLkkklkkiaviGpnad.etlklGggsgtvtvsylvsplegirerles................eegideaveaakeaDvavv 77 
                      +VLLkNe++lLP+++++++ia+iGp  + ++ +lG +s+    + ++++ eg++++++                 + + ++a ++a+++ ++v+
       CCG91285.1 368 VVLLKNEDGLLPIAPSIRSIALIGPFSEeRKEHLGPWSAIGDCNDVITLAEGLKRYAPRgtkihvvegcnkfshgTVDYQQALKIAQSSQLIVA 461
                      7************************99978999********9999************99****************8899*************** PP

                      EEEES...SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG--TTTGTTTEEEEEE-S--GCCHHHHHHHHHTTSS---B--SS-EE CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  78 vvgedpeiegEgvDrtdlalpeaqdelikavaaanknvvvvlqsggpvavepwkeenvkAilaawlpGqegGtaiadvLfGdvnPsGkLpvtfp 171
                      +vge+ +++gE   r+ l+lp +q++li+ + +++ +vv+++ sg+p++++++   + kAil+aw+ G+e+G+a+ ++LfG +nPsGkLp+tfp
       CCG91285.1 462 AVGEKANMSGEAASRAFLDLPTQQQKLIEVLLETGVPVVLIVFSGRPLDLSRI-ISKTKAILQAWFLGTETGEALGQILFGLYNPSGKLPITFP 554
                      *****************************************************.679************************************* PP

                      SSSGGG.......................S.-----SETTTT-BCH CS
                      xxxxxxxxxxxxxx...xx.........xx.xxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 172 ksledlpddyyeek...dt.........yk.fegtplYpeGlglsY 204
                      +s++++p  yy +    ++         y  +++tpl+p+G+glsY
       CCG91285.1 555 RSVGQIPI-YYAQLptgRPanrsfpscrYIdQSNTPLFPFGYGLSY 599
                      ******99.7777665522677899999777**************9 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   8.4e-23     5e-19       1      71 []     636     705 ..     636     705 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 8.4e-23
                 EEEEEEEEESS-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESSS CS
    Fn3-like   1 evvqlYvsdpessverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgtss 71 
                 e+vqlY++dp +s++rp keLkg ++v+L+pGe ++++f+l++ dl++ d e +k+ +epG++ ++vg +s
  CCG91285.1 636 EIVQLYIRDPVASISRPLKELKGIRRVFLKPGERQKIKFSLSSVDLAFIDYE-GKRKIEPGRFFLWVGPNS 705
                 89**************************************************.799************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4946.09
//
Query:       CCG91286.1  [L=458]
Description: GTP-binding protein engA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-48  162.4   0.3    8.9e-23   80.5   0.1    2.2  2  MMR_HSR1         50S ribosome-binding GTPase
    1.1e-25   90.0   0.0    2.4e-12   46.7   0.0    2.5  2  FeoB_N           Ferrous iron transport protein B
    6.2e-22   77.7   0.2    2.1e-21   76.0   0.2    1.9  1  KH_dom-like      KH-domain-like of EngA bacterial GTPase enzy
    1.6e-17   63.7   0.0    1.4e-07   31.2   0.0    5.0  4  GTP_EFTU         Elongation factor Tu GTP binding domain
    5.7e-14   52.5   0.2    3.7e-05   23.8   0.0    4.1  4  Dynamin_N        Dynamin family
    4.6e-10   39.2   0.4    2.1e-06   27.2   0.1    2.2  2  AIG1             AIG1 family
    1.8e-09   37.6   0.0    0.00043   20.3   0.0    2.7  2  MMR_HSR1_Xtn     C-terminal region of MMR_HSR1 domain
    1.7e-07   31.3   0.1      0.019   14.9   0.0    4.0  3  RsgA_GTPase      RsgA GTPase
    6.8e-07   29.1   0.1    0.00067   19.4   0.0    3.8  3  PduV-EutP        Ethanolamine utilisation - propanediol utili
      5e-06   26.7   0.1       0.61   10.3   0.0    4.0  2  Roc              Ras of Complex, Roc, domain of DAPkinase
    5.6e-05   22.6   0.1     0.0099   15.3   0.0    2.7  2  SRPRB            Signal recognition particle receptor beta su
    0.00018   22.0   0.0      0.064   13.8   0.0    2.4  2  ABC_tran         ABC transporter
    0.00036   20.2   0.0       0.13   11.9   0.0    3.2  3  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0015   18.2   0.0      0.065   12.9   0.0    2.5  2  AAA_24           AAA domain
     0.0041   16.2   0.1        2.1    7.3   0.1    3.5  4  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0099   15.3   0.5       0.34   10.3   0.1    3.1  2  Arf              ADP-ribosylation factor family
  ------ inclusion threshold ------
      0.013   15.8   0.0       0.58   10.5   0.0    2.3  2  Nuc_deoxyri_tr2  Nucleoside 2-deoxyribosyltransferase like
      0.014   15.8   0.0        1.6    9.2   0.0    2.6  2  AAA              ATPase family associated with various cellul
      0.026   14.3   6.1        1.4    8.7   0.3    3.3  2  NOG1             Nucleolar GTP-binding protein 1 (NOG1)
      0.028   14.7   0.0         11    6.3   0.0    3.1  2  AAA_22           AAA domain
       0.04   13.3   0.1         21    4.5   0.0    3.1  3  TniB             Bacterial TniB protein
      0.055   13.9   0.0         18    5.8   0.0    2.5  2  RNA_helicase     RNA helicase
       0.07   12.9   0.0        1.4    8.7   0.0    2.6  2  AAA_29           P-loop containing region of AAA domain
       0.13   12.2   0.1        9.8    6.0   0.0    2.6  2  NTPase_1         NTPase


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   1.7e-25   1.3e-22       2     114 .]       4     119 ..       3     119 .. 0.82
   2 !   80.5   0.1   1.2e-25   8.9e-23       1     114 []     180     298 ..     180     298 .. 0.86

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 1.7e-25
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS...HHHHHH.HHHHHHHHHHCTSEEEEEEETTTTCSHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGlie...gaseek.glgkaflaleeadlillvvdaseeklkplde 95 
                 vai+GrpNvGKS L+n+++ +  + v d+pg+Trd +   ++ +g++  l+Dt G ++   + + ek  +++   +l ea +il+vvd + ++l+pld 
  CCG91286.1   4 VAIIGRPNVGKSLLFNRICCKeLSLVHDIPGVTRDRIISFIHRDGQKAMLIDTGG-LDfnsKTNLEKsLFEQIEISLTEATHILFVVDGR-TGLTPLDL 100
                 89****************877589************999999999**********.652222233332222333335679********66.77****** PP

                 HHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  96 eleelleeakkplilvlnk 114
                 e+ ++l++++kp+++v+nk
  CCG91286.1 101 EIGKFLKKRHKPVFVVVNK 119
                 ******************8 PP

  == domain 2  score: 80.5 bits;  conditional E-value: 1.2e-25
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGC.........SSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTC CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGl.........iegaseekglgkaflaleeadlillvvdaseek 89 
                 ++a++G+pN+GKStLin l+ge +  v ++pgtT d +   +++ g +++l+Dt+Gl         +e    +k  g++++a+++++++l+v+da+ ++
  CCG91286.1 180 RIAVIGQPNAGKSTLINGLIGEkRLVVDEHPGTTHDAVDVDFSIAGLPFTLIDTAGLrkknklqpgLE----SKIAGRTVHAINRSHIVLFVIDAE-KG 273
                 69*******************967788*****************************633333221112....3357788888999*********87.77 PP

                 SHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  90 lkpldeeleelleeakkplilvlnk 114
                 ++ +d+++  l+++a +p+i+vlnk
  CCG91286.1 274 ISLQDKKIGGLIQKAFRPCIIVLNK 298
                 ************************8 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   3.2e-15   2.4e-12       2     156 .]       3     158 ..       2     158 .. 0.86
   2 !   41.0   0.0   1.7e-13   1.3e-10       2     124 ..     180     308 ..     179     349 .. 0.70

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 3.2e-15
                 EEEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHH.HHCTSSSEEEEEEEGGGHHHHHHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardf.lleeepdvvvnvvdatnlernLyLt 98 
                  va++G pnvGk+ lfn+++ ++ + v   pGvt ++    ++ +g+++ ++D  G    s+++ e+++ +++ +  +e+  ++ vvd  +    L L 
  CCG91286.1   3 VVAIIGRPNVGKSLLFNRICCKElSLVHDIPGVTRDRIISFIHRDGQKAMLIDTGGLDFNSKTNLEKSLFEQIeISLTEATHILFVVDGRTGLTPLDLE 101
                 589****************988835699***************9************98889999999998887355788999*******9988877776 PP

                 HH..HHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH CS
      FeoB_N  99 lq..llelgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieellkai 156
                 +   l   ++pv +++n+id  + ++ ++d  +L       + ++sa++++gieell++i
  CCG91286.1 102 IGkfLKKRHKPVFVVVNKIDDPKLENNTLDFVALGFD---TIFPVSAAHNRGIEELLRSI 158
                 6422778889********************9876543...47789***********9875 PP

  == domain 2  score: 41.0 bits;  conditional E-value: 1.7e-13
                 EEEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSS..SHHHHHHHHHHH.CTSSSEEEEEEEGGG.HH.HH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGiYslsay..seeekvardfll.eeepdvvvnvvdatn.le.rn 94 
                 ++a++G+pn+Gk+tl+n l g k   v  +pG+t +   + ++++g  ++++D  G  + ++     e k+a ++++  ++ ++v+ v+da++ +  ++
  CCG91286.1 180 RIAVIGQPNAGKSTLINGLIGEKrLVVDEHPGTTHDAVDVDFSIAGLPFTLIDTAGLRKKNKLqpGLESKIAGRTVHaINRSHIVLFVIDAEKgISlQD 278
                 69******************987256789****************************877654115789999888873577899999****75322122 PP

                 HHHHHHHHHTTSSEEEEEETHHHHHHTTEE CS
      FeoB_N  95 LyLtlqllelgvpvvlalnmideaekkgie 124
                   +   +     p++++ln+id +e++  +
  CCG91286.1 279 KKIGGLIQKAFRPCIIVLNKIDLLENSFDR 308
                 233334445668999*******99876444 PP

>> KH_dom-like  KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.2   2.8e-24   2.1e-21       2      80 .]     360     446 ..     360     446 .. 0.90

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 2.8e-24
                  --HHHHHHHHHHHHCCS--S.ETTCC-EEEEEEE.......EETTTTEEEEEECSCCCS-HHHHHHHHHHHHHHCT-TTS--EEEEE CS
  KH_dom-like   2 istseLnrvleeavekhppp.vkgkrlkiyyatq.......vgtrpptfvlfvndpelvkesykryLenqlreafgfegtPirlkfR 80 
                  i+t+   +++++++ + pp   +gkrlkiyyatq        g   ptfvlfvn+ +l+k +yk++Le +lr++f f+g+Pi +k++
   CCG91286.1 360 IPTHDVAEFFQRTLHQFPPQpIQGKRLKIYYATQlknkdssKGPPCPTFVLFVNNLKLLKAAYKKFLEGKLRQTFAFTGCPILWKWK 446
                  79***************998777***********8888863334456*************************************997 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   7.2e-06    0.0054      89     139 ..      77     127 ..       1     161 [. 0.80
   2 !    8.0   0.0    0.0025       1.9       5      26 ..     180     201 ..     177     221 .. 0.84
   3 ?   -2.3   0.0       3.5   2.6e+03      53      79 ..     211     235 ..     205     241 .. 0.79
   4 !   31.2   0.0   1.9e-10   1.4e-07      88     189 ..     255     350 ..     243     354 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.2e-06
                 HHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHH CS
    GTP_EFTU  89 rglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkael 139
                  +l  +   ++vvd + G +p   e+ + ++k++ p++v++NK+D +k e 
  CCG91286.1  77 ISLTEATHILFVVDGRTGLTPLDLEIGKFLKKRHKPVFVVVNKIDDPKLEN 127
                 45666777899**********************************996654 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0025
                 EEEEEESTTSSHHHHHHHHHHH CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyk 26 
                  i++ig  ++GK+TL+  L+ +
  CCG91286.1 180 RIAVIGQPNAGKSTLINGLIGE 201
                 689*************999855 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.5
                 TSCSSCEEEEEETTCSSEEEEEEEESS CS
    GTP_EFTU  53 giTiksaaisleketkkylinliDtPG 79 
                 g T ++  + ++   +   ++liDt G
  CCG91286.1 211 GTTHDAVDVDFS--IAGLPFTLIDTAG 235
                 666777777777..888889*****99 PP

  == domain 4  score: 31.2 bits;  conditional E-value: 1.9e-10
                 HHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHH.HHTTTTTEEEEEEBTTTTBTHHHHH CS
    GTP_EFTU  88 irglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeekleky.gekgekevpvvfgSalkgegvktll 185
                  ++++  +++++v+da++G+  q +++  l++k   p i+++NK+D l++++++     +++l      ++   ++   +  pvv  Sa k++++++l+
  CCG91286.1 255 VHAINRSHIVLFVIDAEKGISLQDKKIGGLIQKAFRPCIIVLNKIDLLENSFDRRNWGKESRL-----LIQRElPFL--SYAPVVALSAEKKWNYQSLF 346
                 567788899*******************************************99887777777.....344442554..589****************9 PP

                 HHHH CS
    GTP_EFTU 186 ealv 189
                  a+ 
  CCG91286.1 347 TAIL 350
                 9986 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.19   1.4e+02       1      30 [.       4      33 ..       4      45 .. 0.82
   2 !    8.5   0.0    0.0026       1.9     101     167 ..      49     119 ..      39     120 .. 0.87
   3 !   23.8   0.0     5e-08   3.7e-05       1      33 [.     181     213 ..     181     222 .. 0.93
   4 !   12.8   0.0   0.00012      0.09     101     167 ..     226     298 ..     219     299 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.19
                EEEEEBTTTTHHHHHHHHHTS--S---SSS CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnp 30
                +a++G  + GKS + n ++ +++  ++ +p
  CCG91286.1  4 VAIIGRPNVGKSLLFNRICCKELSLVHDIP 33
                7999************99999887777665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0026
                 -SEEEEE---B-SSSGTTS.....HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 101 kgltlvDlPGldsvnkrdq.....elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                 ++  l+D+ Gld + k +      e ++  +++a+ il+v++  + l+    l++ + +++++k ++vv++k
  CCG91286.1  49 QKAMLIDTGGLDFNSKTNLekslfEQIEISLTEATHILFVVDGRTGLT-PLDLEIGKFLKKRHKPVFVVVNK 119
                 6778********9888888888999999999**************999.66688999999999999999998 PP

  == domain 3  score: 23.8 bits;  conditional E-value: 5e-08
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS--- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTr 33 
                 iav+G+ ++GKS+++n L+ge+ l++++ p T 
  CCG91286.1 181 IAVIGQPNAGKSTLINGLIGEKRLVVDEHPGTT 213
                 89**************************99874 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 0.00012
                 -SEEEEE---B-SSSGTTS.......HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 101 kgltlvDlPGldsvnkrdq.......elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                    tl+D+ Gl + nk +          + ++i++++i+l+v +a++ +s  + +++  ++++  + +i+vl+k
  CCG91286.1 226 LPFTLIDTAGLRKKNKLQPgleskiaGRTVHAINRSHIVLFVIDAEKGIS-LQDKKIGGLIQKAFRPCIIVLNK 298
                 5679*********99888899998887778889****************9.56678999999999999999998 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00047      0.35       4      90 ..       5      89 ..       2     118 .. 0.78
   2 !   27.2   0.1   2.8e-09   2.1e-06       2     112 ..     180     290 ..     179     305 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00047
                EEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SC.CCTTCCHHCHHHHHHHHHHHCTT-ESEEEEE CS
        AIG1  4 vlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPgl.fdlsvsadkiskeivrclllseegihalllv 90
                 ++G+  +GkS   N i  k+    +    +vt+    +   +dg+k   iDT gl f+++++ +k   e ++ ++l+e   h+l +v
  CCG91286.1  5 AIIGRPNVGKSLLFNRICCKELSLVH-DIPGVTRDRIISFIHRDGQKAMLIDTGGLdFNSKTNLEKSLFEQIE-ISLTEA-THILFVV 89
                579**************999886666.6799***9999999***************99999998887777776.444443.4555443 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 2.8e-09
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETT.B-SHH CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslg.rftee 99 
                 +i ++G+  +GkS+ +N ++g+k      ++ + t+    +  + +g     iDT gl   ++ +  ++ +i  +   + +  h++l+v++++  ++ +
  CCG91286.1 180 RIAVIGQPNAGKSTLINGLIGEKRLVVD-EHPGTTHDAVDVDFSIAGLPFTLIDTAGLRKKNKLQPGLESKIAGRTVHAINRSHIVLFVIDAEkGISLQ 277
                 899**********************999.68889999999999********************999***************************99**** PP

                 HHHHHHHHHHHHC CS
        AIG1 100 dekalktlkelFG 112
                 d+k+   ++++F 
  CCG91286.1 278 DKKIGGLIQKAFR 290
                 *********9995 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   5.7e-07   0.00043      51     101 ..     106     159 ..      56     161 .. 0.69
   2 !   14.3   0.0   4.1e-05     0.031      53     100 ..     287     349 ..     274     350 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 5.7e-07
  MMR_HSR1_Xtn  51 gnrvYipclyvlNKiDl..isleeldelare.pnsvviSaekelnldeLkekiw 101
                    ++  +p+++v+NKiD   +++++ld +a   + ++++Sa+++ +++eL+  i+
    CCG91286.1 106 LKKRHKPVFVVVNKIDDpkLENNTLDFVALGfDTIFPVSAAHNRGIEELLRSIF 159
                   466789**********966777788888885478899***************99 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 4.1e-05
  MMR_HSR1_Xtn  53 rvYipclyvlNKiDlisleeldelare...............pnsvviSaekelnldeLkeki 100
                   + + pc++vlNKiDl++++  ++   +                 +v +Saek++n ++L ++i
    CCG91286.1 287 KAFRPCIIVLNKIDLLENSFDRRNWGKesrlliqrelpflsyAPVVALSAEKKWNYQSLFTAI 349
                   6799***********655432222111234455666888776577889999999999887665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.021        16     100     130 ..       2      32 ..       1      61 [. 0.79
   2 !   14.9   0.0   2.5e-05     0.019      77     129 ..     155     208 ..     102     240 .. 0.67
   3 ?    5.9   0.0     0.015        11      36      71 ..     278     314 ..     246     348 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.021
                  SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgev 130
                  k+++++G   vGKS L n++  ++   ++++
   CCG91286.1   2 KVVAIIGRPNVGKSLLFNRICCKELSLVHDI 32 
                  68899***************98766555555 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2.5e-05
                  SEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase  77 yevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktge 129
                  ++ ++vs +  ++ ++lk   +    ++++Gq  +GKStLin l++e++l + e
   CCG91286.1 155 LRSIFVSDSIVTEQKDLKLPAAPpTRIAVIGQPNAGKSTLINGLIGEKRLVVDE 208
                  455566666666666776666665678899****************99888776 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.015
                  HHHHHHHHHTT-.EEEEEEE-GGG--HHHHHHHHHHH CS
  RsgA_GTPase  36 drfLvlaeekgi.epvivlnKiDlleeeeeleelkee 71 
                  d+ +  + +k   + +ivlnKiDlle++ + +++ +e
   CCG91286.1 278 DKKIGGLIQKAFrPCIIVLNKIDLLENSFDRRNWGKE 314
                  55555555555525689********998766666554 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     9e-07   0.00067      40     140 ..      53     157 ..       1     159 [. 0.71
   2 ?    3.2   0.0      0.09        67       3      24 ..     180     201 ..     178     206 .. 0.87
   3 ?    0.3   0.0       0.7   5.3e+02      64     104 ..     261     304 ..     246     311 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 9e-07
   PduV-EutP  40 viDtPG.eyle....nrklysalivtsaeadvialvqdateeesvfppgfasvfn...keviGiitkidlaedeenieaveelLksaGaekifevsave 130
                 +iDt G ++      +++l + + ++ +ea  i +v+d  +  + +  ++ ++++   k+v  ++ kid +    ++e+    + + G ++if vsa +
  CCG91286.1  53 LIDTGGlDFNSktnlEKSLFEQIEISLTEATHILFVVDGRTGLTPLDLEIGKFLKkrhKPVFVVVNKIDDP----KLENNTLDFVALGFDTIFPVSAAH 147
                 46666643433111135566777888899999999999999888888777777652227999999999999....7888888999************** PP

   PduV-EutP 131 kegieellky 140
                 + gieell+ 
  CCG91286.1 148 NRGIEELLRS 157
                 ******9865 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.09
   PduV-EutP   3 killiGkvgsGKttLtqalkge 24 
                 +i +iG+ ++GK tL + l ge
  CCG91286.1 180 RIAVIGQPNAGKSTLINGLIGE 201
                 899************9988765 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.7
   PduV-EutP  64 advialvqdateeesvfppgfasvfnk...eviGiitkidlaed 104
                 + ++ +v da++  s+  +++  +++k   ++i ++ kidl e+
  CCG91286.1 261 SHIVLFVIDAEKGISLQDKKIGGLIQKafrPCIIVLNKIDLLEN 304
                 56788888888888888888877776433389*9******9865 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00083      0.62       2     119 ..       4     121 ..       2     122 .. 0.48
   2 !   10.3   0.0   0.00082      0.61       1      73 [.     180     243 ..     180     301 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00083
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTT..T-.......HHHHCTSCEEEEEEEGHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrs..lh.......plylreaalailvydsrs 91 
                 v ++G  +vGK+ l++r++ ++ s  +  + gv+    ++   + ++ d +    k  + Dt+G +  ++  l+       ++ l+ea  +++v+d r+
  CCG91286.1   4 VAIIGRPNVGKSLLFNRICCKELSLVH-DIPGVTRD--RII--SFIHRDGQ----KAMLIDTGGLDFNSKtnLEkslfeqiEISLTEATHILFVVDGRT 93 
                 579****************88886443.44455432..222..22222221....12334555443322211111001111333455666666666555 PP

                 H.HCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  92 s.enlkeWlkelkkvagkspvilvgnkiD 119
                   + l+  + ++ k+ +++pv++v+nkiD
  CCG91286.1  94 GlTPLDLEIGKFLKK-RHKPVFVVVNKID 121
                 324444444443332.3456777777776 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00082
                 EEEEESSTTSSHHHHHHCHCT-CC.C-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT- CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkf.sekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslh 73 
                 ++ ++G+ ++GK++l++ ++ +k    +e++ +  d ++ ++ +i           + + + DtaG  + ++l+
  CCG91286.1 180 RIAVIGQPNAGKSTLINGLIGEKRlVVDEHPGTTHDAVDVDF-SIA---------GLPFTLIDTAGLRKKNKLQ 243
                 5899*************9998775223333333333333332.222.........3456666666666655555 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.3e-05    0.0099       5      85 ..       3      91 ..       1      95 [. 0.75
   2 ?    4.4   0.0     0.031        23       5      68 ..     180     248 ..     177     277 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
                EEEEE-STTSSHHHHHHHHHHS..S---B---SS-EEETTG...GGTT-SEEEETT.....-GCCSHHHHHHHHHHGG.EEEEEEEEET CS
       SRPRB  5 avllvGlsdsGKTslftrLttd..svkktvtSqessaalkvksekgskltliDfPG.....heklrqklleklkakss.lkglvfvvDS 85
                 v ++G  + GK +lf+r+  +  s  +    +      ++  ++g+k  liD  G     + +l + l+e++  + + +  ++fvvD 
  CCG91286.1  3 VVAIIGRPNVGKSLLFNRICCKelSLVHDIPGVTRDRIISFIHRDGQKAMLIDTGGldfnsKTNLEKSLFEQIEISLTeATHILFVVDG 91
                6789****************994433444444444444444689999999*998773333356899******9877666********95 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.031
                 EEEEE-STTSSHHHHHHHHHHS..S---B---S.S-EEETTG...GGTT-SEEEETT...-GCCSHHHHH CS
       SRPRB   5 avllvGlsdsGKTslftrLttd..svkktvtSq.essaalkvksekgskltliDfPG...heklrqklle 68 
                 ++ ++G  ++GK +l++ L  +   v +      +  +  ++ s  g  +tliD  G   ++kl+  l  
  CCG91286.1 180 RIAVIGQPNAGKSTLINGLIGEkrLVVDEHPGTtHDAVDVDF-SIAGLPFTLIDTAGlrkKNKLQPGLES 248
                 57799*************998744222222222233444444.778999999999993333344433333 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.024        18      12      32 ..       2      22 ..       1      37 [. 0.90
   2 !   13.8   0.0   8.5e-05     0.064       3      36 ..     170     203 ..     168     246 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.024
                SEEEEEESTTSSHHHHHHHHT CS
                xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlklla 32
                ++vai+G+   GKS L++ ++
  CCG91286.1  2 KVVAIIGRPNVGKSLLFNRIC 22
                689**************9987 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 8.5e-05
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllk 36 
                 +++l   + +++a++G+  aGKStL++ l+g+ +
  CCG91286.1 170 DLKLPAAPPTRIAVIGQPNAGKSTLINGLIGEKR 203
                 56666677899******************99875 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.36   2.7e+02      69     151 ..      28     121 ..       3     132 .. 0.59
   2 ?    3.1   0.0     0.082        61       4      22 ..     182     201 ..     179     218 .. 0.82
   3 !   11.9   0.0   0.00017      0.13     104     161 ..     253     310 ..     227     326 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.36
                 HHHHHHHHHHHH.......TT-SEEEEEECTTTTHHHH.HTT..SHHHHH.CCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HH CS
        cobW  69 llkelealeere.......erldviliEttGlaePapv.aft..eeelks.dltldavvavvDaknleaeeekieekaedqlaaadllvlnKtD 151
                 l+  +  + +++       +   ++li t+Gl       + +   e+++   ++++++++vvD++   +  + +  k+ ++  +  ++v+nK+D
  CCG91286.1  28 LVHDIPGVTRDRiisfihrDGQKAMLIDTGGLDFNSKTnLEKslFEQIEIsLTEATHILFVVDGRTGLTPLDLEIGKFLKKRHKPVFVVVNKID 121
                 4444444444445555554445667777777544443322223333333314455566778888666555555566666666666778888887 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.082
                 EEEESTTCCHHHHHHHHH.C CS
        cobW   4 vltGflGsGKTtLlnhll.e 22 
                  + G + +GK+tL+n l+ e
  CCG91286.1 182 AVIGQPNAGKSTLINGLIgE 201
                 5778899********99943 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00017
                 HHHHHCCCECEEEEEEETTTH..CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHH CS
        cobW 104 eelksdltldavvavvDaknl.eaeeekieekaedqlaaadllvlnKtDlldeeallek 161
                 +++++  +  +v++v+Da++  + +++ki  ++++ +  + ++vlnK+Dll+++++ ++
  CCG91286.1 253 RTVHAINRSHIVLFVIDAEKGiSLQDKKIGGLIQKAFRPC-IIVLNKIDLLENSFDRRN 310
                 55566667788999****8874455666666666666665.99**********977554 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.14   1.1e+02       4      22 ..       3      21 ..       1      36 [. 0.84
   2 !   12.9   0.0   8.8e-05     0.065       3      36 ..     179     213 ..     178     243 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.14
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 ++i+G + +GK+ l +++
  CCG91286.1  3 VVAIIGRPNVGKSLLFNRI 21
                689**********988776 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 8.8e-05
      AAA_24   3 lkiliyGpsgiGKTtlakel.gpkplfidtekGlk 36 
                  +i+++G++ +GK+tl++ l g+k l++d   G+ 
  CCG91286.1 179 TRIAVIGQPNAGKSTLINGLiGEKRLVVDEHPGTT 213
                 689************************99777774 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.15   1.1e+02      30      51 ..       2      23 ..       1      29 [. 0.88
   2 ?   -2.1   0.0         2   1.5e+03     207     227 ..     140     160 ..     137     172 .. 0.78
   3 !    7.3   0.1    0.0028       2.1      30      50 ..     179     199 ..     169     207 .. 0.87
   4 ?    2.2   0.0     0.096        72     137     225 ..     255     349 ..     250     360 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.15
                EEEEEEE-TTSSHHHHHHHHHH CS
        MeaB 30 qvvGltGvPGaGkstlvealgl 51
                +vv + G P +Gks l +++ +
  CCG91286.1  2 KVVAIIGRPNVGKSLLFNRICC 23
                6899************999876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2
                 EEEEBCCCTBSHHHHHHHHHH CS
        MeaB 207 vlktsavegeGidelvdaiee 227
                 +  +sa +++Gi+el+  i  
  CCG91286.1 140 IFPVSAAHNRGIEELLRSIFV 160
                 5668999********998865 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0028
                 EEEEEEE-TTSSHHHHHHHHH CS
        MeaB  30 qvvGltGvPGaGkstlvealg 50 
                 +++ + G P aGkstl++ l+
  CCG91286.1 179 TRIAVIGQPNAGKSTLINGLI 199
                 7999*************9987 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.096
                 HHHHTT-SEEEEEEESSTTTTTTT--CC.CHHH-...SEEEEE---HHHHHHHHHHHHHHHHHCSTT..BTTB--EEEEEBCCCTBSHHHHHHHH CS
        MeaB 137 vdvaevvdtfvvlllpeaGDelqgikkG.ileia...DiivvnkaDkkeaekaarelraaleleeek..ekeWrpkvlktsavegeGidelvdai 225
                 v+ ++  ++++ ++ +e G  lq  k G ++  a    iiv+nk D+ e +  +r++ +  +l+ ++       ++v+  sa ++   ++l++ai
  CCG91286.1 255 VHAINRSHIVLFVIDAEKGISLQDKKIGgLIQKAfrpCIIVLNKIDLLENSFDRRNWGKESRLLIQRelPFLSYAPVVALSAEKKWNYQSLFTAI 349
                 566778888999999999999999997537776644469*******7666666666555544444441144445777888887777777777666 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.36   2.7e+02     105     129 ..     103     124 ..       4     158 .. 0.77
   2 !   10.3   0.1   0.00046      0.34      15     127 ..     179     301 ..     168     316 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.36
                 HHHCTSGCCTTSEEEEEEE-TTSTT CS
         Arf 105 kalleeeelkevallvlaNKqDlpe 129
                  ++l++   ++ ++ v+ NK+D p+
  CCG91286.1 103 GKFLKK---RHKPVFVVVNKIDDPK 124
                 444443...4567888889999776 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00046
                 EEEEEEESTTSSHHHHHHHHHHSS..CEECSS.SSSEEEE.EEEETTEEEEEEEE-SSGG...GGGGGG........GGCTTESEEEEEEETT-CTTHH CS
         Arf  15 lrilllGLDnaGKtTilkklklee..lvttvP.Tigfnve.eleiknlkftvwDvGGqek...lRplWk........nYfektdavifvvDsadreRle 98 
                 +ri ++G  naGK+T+++ l  e+  +v+  P T++  v+ + +i +l ft+ D  G +k   l p  +        +  ++ + v+fv+D+ +   ++
  CCG91286.1 179 TRIAVIGQPNAGKSTLINGLIGEKrlVVDEHPgTTHDAVDvDFSIAGLPFTLIDTAGLRKknkLQPGLEskiagrtvHAINRSHIVLFVIDAEKG--IS 275
                 6999***************9877633344555366666653567899999999999965411133332211111111223344556666666543..44 PP

                 HHHHHHHHHCTSGCCTTSEEEEEEE-TTS CS
         Arf  99 eakeeLkalleeeelkevallvlaNKqDl 127
                    +++  l+++      + +++ NK+Dl
  CCG91286.1 276 LQDKKIGGLIQKA---FRPCIIVLNKIDL 301
                 4445566666543...2345566666666 PP

>> Nuc_deoxyri_tr2  Nucleoside 2-deoxyribosyltransferase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00078      0.58      67     106 ..      78     118 ..      60     120 .. 0.77
   2 ?    2.8   0.0      0.19   1.4e+02      65      89 ..     255     279 ..     240     298 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00078
                      HHHH-SEEEEEE-TT---HHHH.HHHHHHTTS.S-EEEEE-T CS
  Nuc_deoxyri_tr2  67 alekAdvvvfvfdgedsatrsl.vElglaaak.gkkvvlvpk 106
                       l +A+ ++fv+dg +++ + l +E+g + +k +k+v++v++
       CCG91286.1  78 SLTEATHILFVVDG-RTGLTPLdLEIGKFLKKrHKPVFVVVN 118
                      4689**********.44555668******9998999888875 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.19
                      HHHHHH-SEEEEEE-TT---HHHH..H CS
  Nuc_deoxyri_tr2  65 lealekAdvvvfvfdgedsatrsl..v 89 
                       +a++++ +v+fv+d   ++ +sl   
       CCG91286.1 255 VHAINRSHIVLFVIDA--EKGISLqdK 279
                      578899*********9..666777554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.091        68       2      21 ..       5      24 ..       4      89 .. 0.72
   2 ?    9.2   0.0    0.0021       1.6       3      73 ..     183     305 ..     181     321 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.091
                EEESSTTSSHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavake 21
                 ++G p +GK+ll + ++ +
  CCG91286.1  5 AIIGRPNVGKSLLFNRICCK 24
                579**********9888754 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0021
                 EESSTTSSHHHHHHHHHHH......................HTHEEEEEETTTCSSS.................................STTHHHHHH CS
         AAA   3 lyGppGtGKTllakavake......................lgvefleisgsellsk.................................yvgesekki 46 
                 ++G p  GK++l++ ++ e                      +g +f  i+ + l++k                                  ++ + kki
  CCG91286.1 183 VIGQPNAGKSTLINGLIGEkrlvvdehpgtthdavdvdfsiAGLPFTLIDTAGLRKKnklqpgleskiagrtvhainrshivlfvidaekGISLQDKKI 281
                 79*****************88777777766666655555544677888888888866789999999999999999999999998888888888888888 PP

                 HHHHHHHHHTSTSEEEEEETGGGHHHH CS
         AAA  47 relfkeakekakpsilfiDEidalaks 73 
                  +l+++a    +p+i+++  id l +s
  CCG91286.1 282 GGLIQKAF---RPCIIVLNKIDLLENS 305
                 88888876...489***9999988554 PP

>> NOG1  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.1     0.011       8.5      42      58 .]     107     121 ..      81     121 .. 0.77
   2 ?    8.7   0.3    0.0019       1.4      15      58 .]     262     300 ..     253     300 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.011
        NOG1  42 kelfankpvivvlnKiD 58 
                 k++  +kpv+vv+nKiD
  CCG91286.1 107 KKR--HKPVFVVVNKID 121
                 333..48*********9 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0019
        NOG1  15 davlFllDpseecgysleeQlsLleeikelfankpvivvlnKiD 58 
                 ++vlF++D+   +g sl++  ++   i++ f+  p i+vlnKiD
  CCG91286.1 262 HIVLFVIDAE--KGISLQD-KKIGGLIQKAFR--PCIIVLNKID 300
                 6899999975..6888887.577777888886..*********9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0      0.04        30       7      25 ..       3      21 ..       2     116 .. 0.83
   2 ?    6.3   0.0     0.015        11       8      27 ..     181     200 ..     177     269 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.04
      AAA_22  7 ilvvtGesGtGKTtllrrl 25
                +++++G + +GK++l +r+
  CCG91286.1  3 VVAIIGRPNVGKSLLFNRI 21
                6789**********99886 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.015
      AAA_22   8 lvvtGesGtGKTtllrrlle 27 
                 ++v+G++ +GK+tl++ l  
  CCG91286.1 181 IAVIGQPNAGKSTLINGLIG 200
                 79************987765 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.028        21      35      56 ..       1      22 [.       1      36 [. 0.87
   2 ?    4.0   0.0      0.04        30      37      54 ..     180     197 ..     169     219 .. 0.82
   3 ?    0.7   0.0      0.41   3.1e+02      70      92 ..     329     351 ..     319     379 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.028
        TniB 35 mpnlllvGdsnnGKtmivekFa 56
                m+ + ++G++n+GK+ ++++ +
  CCG91286.1  1 MKVVAIIGRPNVGKSLLFNRIC 22
                67899************99865 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.04
        TniB  37 nlllvGdsnnGKtmivek 54 
                  + ++G++n GK+++++ 
  CCG91286.1 180 RIAVIGQPNAGKSTLING 197
                 5889***********985 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.41
        TniB  70 vpvlvvqappkpdekrlyaaiLe 92 
                  pv++++a +k + + l++aiL 
  CCG91286.1 329 APVVALSAEKKWNYQSLFTAILL 351
                 79*******************94 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.024        18       2      20 ..       5      23 ..       4      77 .. 0.85
   2 ?    5.7   0.0     0.025        18       2      19 ..     182     199 ..     181     244 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.024
  RNA_helicase  2 wlyGpsgeGKStlakeLak 20
                   + G++++GKS+l ++++ 
    CCG91286.1  5 AIIGRPNVGKSLLFNRICC 23
                  689************9864 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.025
  RNA_helicase   2 wlyGpsgeGKStlakeLa 19 
                    + G+++ GKStl++ L+
    CCG91286.1 182 AVIGQPNAGKSTLINGLI 199
                   689************987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.48   3.6e+02      25      39 ..       4      18 ..       1      21 [. 0.85
   2 ?    8.7   0.0    0.0019       1.4      25      40 ..     181     196 ..     167     200 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.48
      AAA_29 25 tlltGpsGsGKSTll 39
                + ++G+  +GKS l+
  CCG91286.1  4 VAIIGRPNVGKSLLF 18
                689*********775 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0019
      AAA_29  25 tlltGpsGsGKSTllD 40 
                 + ++G+  +GKSTl+ 
  CCG91286.1 181 IAVIGQPNAGKSTLIN 196
                 689***********96 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.013       9.8       2      78 ..       4      79 ..       3     111 .. 0.74
   2 ?    3.4   0.0     0.087        65       1      19 [.     180     198 ..     180     203 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.013
                EEEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE-------EEEEEET.T--EEEEEETT---SSEETTEEE-H CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkssgvkvgGfyteevreggrrigFkivdlasgeegiLarveakreprvgkyvvdv 78
                v+i G+p vGK+ l+++++++  s    + G+   ++ +  +r g k + +++g  +  ++++  ++  ++++ + +
  CCG91286.1  4 VAIIGRPNVGKSLLFNRICCKELSLVHDIPGVTRDRIISFIHRDGQKAMLIDTGGLDFNSKTN-LEKSLFEQIEISL 79
                7899**************998777778888888877777777777777777776666555555.5555555555555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.087
                 EEEEE--TTSSHHHHHHHH CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkv 19 
                 ++++ G+p  GK+Tl++ +
  CCG91286.1 180 RIAVIGQPNAGKSTLINGL 198
                 58899**********9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 2999.86
//
Query:       CCG91287.1  [L=203]
Description: Phosphatidylglycerophosphate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-15   56.3   0.0    4.1e-15   56.3   0.0    2.6  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
  ------ inclusion threshold ------
      0.036   13.7   0.2      0.036   13.7   0.2    2.4  2  MotB_plug        Membrane MotB of proton-channel complex MotA
        3.6    7.6   6.6        4.4    7.4   0.5    2.7  3  DUF5480          Family of unknown function (DUF5480)


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   6.9e-19   4.1e-15       2      66 .]       3      78 ..       2      78 .. 0.86
   2 ?   -1.4   4.7      0.72   4.3e+03      26      39 ..     141     175 ..      80     180 .. 0.61

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 6.9e-19
                     -HHHHHHHHHHHHHHHHHGGGS-H.............HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf  2 lPnaiTllrlllsvlailllltyyp...........lvlailllliasltDalDGklARrlnqvstlGkllDslaD 66
                     l+ +iTl+r+++  l +++l  y+                ++++l+a+++D++DG+lAR ++q+s+lG++lD++aD
       CCG91287.1  3 LASWITLFRIVSLPLILFFLKQYEKsdeisqpdeklRAGSLIFFLVAAFSDCIDGYLARNCGQKSKLGAILDPIAD 78
                     789********97777765544444*********97777788888******************999*********9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.72
                      .......................HHHHHHHHHHHH CS
  CDP-OH_P_transf  26 p.....................lvlailllliasl 39 
                                            ++l++l+l+++s+
       CCG91287.1 141 TfmsfslvgfsllgiakltnisVYLCALFLMLSSI 175
                      03334444444444445555666666777666554 PP

>> MotB_plug  Membrane MotB of proton-channel complex MotA/MotB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2     6e-06     0.036      30      50 ..      80     100 ..      80     101 .. 0.90
   2 ?   -2.2   1.0      0.54   3.2e+03      29      39 ..     165     175 ..     163     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6e-06
   MotB_plug  30 laFFvlLfsmssvdekkfqal 50 
                 l +Fv+Lfs+++++++k +++
  CCG91287.1  80 LLLFVMLFSLATINASKIAKI 100
                 579**************9875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.54
   MotB_plug  29 LlaFFvlLfsm 39 
                 L a+F++L s+
  CCG91287.1 165 LCALFLMLSSI 175
                 6699**99876 PP

>> DUF5480  Family of unknown function (DUF5480)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.014        82      28      41 ..      82      95 ..      76      99 .. 0.85
   2 ?   -3.6   0.1       1.9   1.2e+04       4      16 ..     103     115 ..     102     124 .. 0.65
   3 ?    7.4   0.5   0.00073       4.4       5      33 ..     159     187 ..     155     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.014
     DUF5480 28 llvilvslatwntt 41
                l+v+l slat n++
  CCG91287.1 82 LFVMLFSLATINAS 95
                789********986 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.9
     DUF5480   4 llplsviskaicl 16 
                  lpl + s+ + l
  CCG91287.1 103 WLPLLIASRDLFL 115
                 6888888887766 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.00073
     DUF5480   5 lplsviskaicltlssfvfssaallvilv 33 
                   +sv   a+ l lss v+s  a+ ++l 
  CCG91287.1 159 TNISVYLCALFLMLSSIVYSIRAIKILLS 187
                 56788889999*********999887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1587.75
//
Query:       CCG91288.1  [L=448]
Description: Glutamyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-79  264.6   0.0    3.9e-39  134.4   0.0    2.2  2  tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic d
  ------ inclusion threshold ------
      0.047   13.6   0.0       0.29   11.0   0.0    2.4  3  Plectin       Plectin repeat


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.0   4.4e-43   3.9e-39       3      96 ..      10     115 ..       9     120 .. 0.98
   2 !  128.2   0.0   3.3e-41     3e-37     150     314 .]     124     285 ..     116     285 .. 0.95

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 4.4e-43
                   EEEE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---S............SEEEEGGGGHHHHHHHHHH CS
  tRNA-synt_1c   3 rtRfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwd............ekptyqsdrfdelkkyaee 87 
                   r+RfaP+PtGyLH+G+a++al+n+l+A+++nG+filRieDTd++r++++a   i e+l wlg++wd             +p+ qs+r+d++++y+++
    CCG91288.1  10 RVRFAPSPTGYLHVGGARTALFNWLYARHTNGTFILRIEDTDASRNTPQALSVIFENLRWLGLDWDegplpdgrtigpFGPYFQSQRNDIYEAYCKK 106
                   79****************************************************************************99***************** PP

                   HHHTTSEEE CS
  tRNA-synt_1c  88 LikkGkAYv 96 
                   Li k +AY 
    CCG91288.1 107 LIDKDMAYI 115
                   ********7 PP

  == domain 2  score: 128.2 bits;  conditional E-value: 3.3e-41
                   SBTTSSGGGSSTEEEEEEESGGGSBTTTBTSTSEEE-HHHHHHHHHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SH CS
  tRNA-synt_1c 150 ideessvefrDlvrgriklepqeihdlvivksdiyPtYdfavvidDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSK 246
                   ++++  + + D + g+i ++    +d+vi+++d++  +++ +v+dD  ++i+hv+r+e++l+ntpk+i+++e lg+++p ++h++l+ln e++k+SK
    CCG91288.1 124 MPRK-RIIVPDIICGDIYFDCTLEKDFVIRRKDGSFVFHLVNVVDDCEMKISHVIRGEDHLSNTPKHIAIFESLGIKPPLYAHIPLILNPEGSKMSK 219
                   4544.46789***********8889************************************************************************ PP

                   HHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHHHHHHHCCCSSS.EEEEHHHHHHHHHHHHHH CS
  tRNA-synt_1c 247 RklsllvdekqvkewddlreallnflrrlGwtpekerelftreeliksfdlnresksleafdrkkLew 314
                   R++  +  ++++ ++++l+ a  n+l++lGw+++++re+f+ ee i +fdl++  +s++ f+r+kL w
    CCG91288.1 220 RDKGSS--VQEYIDEGYLPKAFRNYLCLLGWSIKENREIFDIEEAIAKFDLTQIHRSNARFNRQKLLW 285
                   ******..999******************************************************987 PP

>> Plectin  Plectin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.3e-05      0.29      18      37 ..      94     113 ..      93     115 .. 0.88
   2 ?   -3.5   0.0       1.2   1.1e+04      20      29 ..     256     265 ..     253     265 .. 0.76
   3 ?   -2.0   0.0      0.38   3.4e+03      24      35 ..     355     366 ..     344     371 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.3e-05
     Plectin  18 gerlsveeAvkrGlldeeta 37 
                 ++r  ++eA+ ++l+d+++a
  CCG91288.1  94 SQRNDIYEAYCKKLIDKDMA 113
                 567789*************8 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.2
     Plectin  20 rlsveeAvkr 29 
                  + +eeA+++
  CCG91288.1 256 IFDIEEAIAK 265
                 5679***986 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.38
     Plectin  24 eeAvkrGlldee 35 
                 ++Av + +ld e
  CCG91288.1 355 NDAVLQQYLDNE 366
                 58999*****88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3382.33
//
Query:       CCG91289.1  [L=314]
Description: Predicted dioxygenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-25   87.5   0.0    1.1e-24   87.0   0.0    1.2  1  Memo      Memo-like protein


Domain annotation for each model (and alignments):
>> Memo  Memo-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   6.4e-29   1.1e-24      25     253 ..      43     295 ..      11     311 .. 0.77

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 6.4e-29
        Memo  25 ekntgkkeiar.viisPHagyvysgevaakayaeles.skvervvilGpsHtilgskvsvlaaseleTPlGdlkvDeelveeLvkkeeiadldetaala 121
                 ++++gk++ +r +++sPH+++ +s++ + +a+++  s ++ + ++ilG+ H+   +  s+ +  ++ TPlG +    e+ve++ ++ ++ + d   ++ 
  CCG91289.1  43 KNTIGKEKKERlAVLSPHIDFQVSPKAYTHAFSHWFSrAEADFFIILGVGHHSRLE-WSIDS-RDYITPLGRAYNRIEIVERIERSVNFSLADPDGHQR 139
                 4555665544414556*****************998879999999*******8765.67766.79********************************** PP

        Memo 122 EHSlEvqlpfLkellkek....kfkivPil.......vsaqsee....takevgealakvikdes..nlviiSsDlsHygrrFgspqeiaesie..... 198
                 EHS+E++++f++ l  +      +  vPil       + +++ +    +++ +++al +v+  +   +++iiS D +H g+rFg+p +++++       
  CCG91289.1 140 EHSIEFPIVFMQALRYWMgiekPLEFVPILcgglhdlIIYNNGKealsMMRMLASALREVLTAYGekAALIISIDGCHIGPRFGHPLDLTKALLkdtel 238
                 *************9999888877899999723322323444444111156677777777777776889****************777766655442336 PP

        Memo 199 .Drevikaleelneeelkeylektnnt..icGekpiavilkalkklgakkakllkYaq 253
                   +e+ k++ee n e++   l+k +n    +G++ ia+++++ k      +k   Y+q
  CCG91289.1 239 wEKELWKNVEEQNLEGFLAHLQKEKNIrfFDGVGAIALLMEIFKDKP-FFFKRTYYEQ 295
                 677889999999999998777665554489************99877.3444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2145.04
//
Query:       CCG91290.1  [L=435]
Description: Glucose-1-phosphate adenylyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-62  209.2   0.0    9.2e-62  208.8   0.0    1.1  1  NTP_transferase  Nucleotidyl transferase
    0.00042   20.7   0.0    0.00068   20.0   0.0    1.4  1  NTP_transf_3     MobA-like NTP transferase domain
  ------ inclusion threshold ------
       0.07   12.9   6.2      0.072   12.9   1.4    3.0  3  Hexapep          Bacterial transferase hexapeptide (six repea
        0.1   12.1   0.3        3.3    7.2   0.1    2.1  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.8   0.0   2.1e-65   9.2e-62       2     245 ..      16     281 ..      15     283 .. 0.97

  Alignments for each domain:
  == domain 1  score: 208.8 bits;  conditional E-value: 2.1e-65
                      EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT......SEEEEEEESS--..... CS
  NTP_transferase   2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg......vevlialepegk..... 84 
                      +vIL+GG+GtRL+PLt+++ak++vp++gk+rl+++++s  +nsg ++ i++ltq++s +++++++++++f+      ve+l+a+++++      
       CCG91290.1  16 TVILGGGAGTRLFPLTKERAKPAVPIAGKYRLVDIPISLSINSGLRR-IFILTQFNSSSLHRHIQQTYRFDdysqgfVEILAAQQTPKGaywyq 108
                      69*********************************************.*************************************99999**** PP

                      BGGHHHHHTHHHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTSBEEEEECS-SSHSH....... CS
  NTP_transferase  85 gtAdAvalaaelledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGvieadeegrverfvEKPkeaka....... 171
                      gtAdAv++++  ++ +  +++vl+L+gD+l+k++y+ +++++ie+ a++tv + +vp ++a++ G+ +++ee+r+  fvEKPke+++       
       CCG91290.1 109 GTADAVRQNLIHFASHP-HDMVLILAGDQLYKMDYRVMIEQHIETCADVTVGITPVPIKQASSLGILRVNEEKRIVAFVEKPKEKEVlkefais 201
                      **************999.69***************************99********************************************* PP

                      ..............CSEECCSEEEEETTHHHHHHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHHHHHH CS
  NTP_transferase 172 ..............selassGiYvfnsevllflakdleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldslleanekl 245
                                     ++as+GiYvfn++ l +++        + d+++di+p +++ ++  ++++  +  yW+D+Gt++++++an +l
       CCG91290.1 202 dpflslyhiprdsaYYFASMGIYVFNRKTLSNALG-----GAEPDFGKDIIPSLIRTHR-VYSYIYPG--YWEDIGTISAFYQANLDL 281
                      *************9999****************88.....88999***********975.5688****..9*************9986 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.5e-07   0.00068       2     117 ..      17     155 ..      16     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.5e-07
                   EEEEESS-TTT.....TTTHHHHCCCCC.CHHHHHHHHHCTT.-CEEEEECSH..CHHHH.........HHTTC........TS-EEE-.TTSS-SH CS
  NTP_transf_3   2 viLAGGrSsRm.....ggdKallplggk.pllervldalraagvdevvvvggd..eevla.........alarl........gvrvved.edpgkgp 72 
                   viL GG+++R+      + K+ +p++gk +l++  +     +g++++++ ++   +++++         +   +         ++ ++  +++++g+
    CCG91290.1  17 VILGGGAGTRLfpltkERAKPAVPIAGKyRLVDIPISLSINSGLRRIFILTQFnsSSLHRhiqqtyrfdD---YsqgfveilAAQQTPKgAYWYQGT 110
                   9**********8887557*******77648*********************8843334333333444441...1333332223333333478899** PP

                   HHHHHHHHHHH...SSSCEEEEETT-TT--HHHHHHHHHCHHHHTSS CS
  NTP_transf_3  73 laslaaalraaa..dadavlvlacDmPlltpelverllaaaaasgad 117
                   + +++  l + a    d vl+la+D+ +  +  ++ +++++ ++ ad
    CCG91290.1 111 ADAVRQNLIHFAshPHDMVLILAGDQLY--KMDYRVMIEQHIETCAD 155
                   ****999988443699**********76..66666666665555555 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.13   5.9e+02      25      36 .]     316     327 ..     312     330 .. 0.71
   2 ?   -2.3   0.0      0.93   4.2e+03       8      26 ..     333     351 ..     332     355 .. 0.63
   3 ?   12.9   1.4   1.6e-05     0.072       4      30 ..     377     402 ..     375     402 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
                 TEEEETTEEEES CS
     Hexapep  25 nvkIgagvvigg 36 
                 n+ I++g+ i+g
  CCG91290.1 316 NSLIAEGCIITG 327
                 666777777664 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.93
                 EEE-TTEEEETTEEE-TTE CS
     Hexapep   8 vlIgpfaviggnVkIGdnv 26 
                 +lIg  +++ + + + d v
  CCG91290.1 333 SLIGIRSIVQPQTCLNDTV 351
                 5788888887776555544 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 1.6e-05
                 EETTEEE-TTEEEETTEEE-TTEEEET CS
     Hexapep   4 IGsnvlIgpfaviggnVkIGdnvkIga 30 
                 IG+n++I   ++i  n  IG+nvkI +
  CCG91290.1 377 IGNNSFIE-KTIIDKNSRIGNNVKISP 402
                 89999999.888888888888888865 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1   0.00073       3.3      66      90 ..     135     160 ..     129     163 .. 0.88
   2 ?    2.6   0.0     0.019        86      43      68 ..     164     189 ..     162     201 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00073
                      HHHHTT-SCEEEEE--.ESEEEEEEE CS
  Dala_Dala_lig_C  66 eeafkydekvlvEeai.egreievav 90 
                      ++  k+d++v++E+ i  + +++v++
       CCG91290.1 135 DQLYKMDYRVMIEQHIeTCADVTVGI 160
                      567899**********8899****98 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.019
                      ESSSSTTTTEEEESSGGGHHHHHHHH CS
  Dala_Dala_lig_C  43 pareGSSvGvskveseeelkeaieea 68 
                      p ++ SS+G+ +v+ e+ + +++e+ 
       CCG91290.1 164 PIKQASSLGILRVNEEKRIVAFVEKP 189
                      66789**************9999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2944.35
//
Query:       CCG91291.1  [L=616]
Description: Glucosamine 6-phosphate synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-53  178.3   0.1    3.2e-28   98.2   0.1    2.4  2  SIS       SIS domain
    2.4e-18   66.7   0.0    4.2e-18   65.8   0.0    1.4  1  GATase_6  Glutamine amidotransferase domain
    1.3e-12   47.7   0.0    2.6e-12   46.7   0.0    1.6  1  GATase_7  Glutamine amidotransferase domain
    5.4e-07   28.8   0.0    8.1e-07   28.2   0.0    1.3  1  GATase_4  Glutamine amidotransferases class-II
     0.0003   20.8   0.0     0.0019   18.2   0.0    2.2  2  SIS_2     SIS domain


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.1   8.8e-32   3.2e-28       3     130 ..     299     425 ..     297     426 .. 0.97
   2 !   77.8   0.0   1.7e-25   6.3e-22       2     130 ..     469     598 ..     468     599 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 8.8e-32
                 CTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEE CS
         SIS   3 akakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadla 101
                    +ri v+G+G+  +++  + + +e+++ i+veve +se+++   +++d+ ++vi++s+sget+d++aa+++ak++g k+++I++  gs++are+   
  CCG91291.1 299 LRIERIQVIGCGSARHAGIVGEYLIESLAHIPVEVEFSSEFRYK-NSPMDRHTVVIAVSQSGETADTLAAVKEAKRKGLKVLGICNRVGSSIARETEGG 396
                 5678****************************************.****************************************************** PP

                 EEEEEECHCSSSHCHHHHHHHHHHHHHHH CS
         SIS 102 lyinaepetlvastksltaqlaaldalav 130
                 + ++a+pe+ va+tks+t+q + + +la+
  CCG91291.1 397 VFMHAGPEIAVAATKSFTSQVLIFTLLAL 425
                 ***********************999986 PP

  == domain 2  score: 77.8 bits;  conditional E-value: 1.7e-25
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHH.HHHHTTSEEEEEESSTTSHHHHHSS CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaae.lakergakiiaITdskgsplaread 99 
                 +a++kr +++G+  +y +a+e+alk++e++++ +e+ +++elkhg++alid+ ++ i++ + +   d++ ++  + k+rg++iiaI+ +k++ +++ ad
  CCG91291.1 469 YAHSKRFLLFGRQFQYGVALEGALKIKEVSYCSAEGNPSAELKHGIIALIDQFTPSIFLCPKDGVYDKNISNMeEIKARGGPIIAIATEKDDLVSKVAD 567
                 6899********************************************************99999999988888************************* PP

                 EEEEEEEECHCSSSHCHHHHHHHHHHHHHHH CS
         SIS 100 lalyinaepetlvastksltaqlaaldalav 130
                 ++lyi+ + e+l +++ ++++ql+a++++++
  CCG91291.1 568 EVLYIPNAQEYLCPILTVIPLQLFAYHLAII 598
                 ****************************987 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   1.2e-21   4.2e-18      10     125 ..      63     191 ..      50     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 1.2e-21
    GATase_6  10 vedevalaHvRlaivglaeeegaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllall...eelG.............eevlerl 92 
                  +++v++ H+R+a++g + +e a+P   + ++l+lvhNG i+ny+ l+++l +  g++f+s++Dtevl++l+    elG             ++ l+++
  CCG91291.1  63 LDGRVGISHTRWATHGIPSDENAHPHFDQLRHLSLVHNGVIENYQLLKQRLIN-LGHTFQSETDTEVLAHLIghyYELGkeddptarliqalKRSLKEI 160
                 4778**************88888******************************.*****************9988666676666766766767777788 PP

    GATase_6  93 rGmfafaiwdk.rentlilardrlgvkplyyavd 125
                  G + +a++ +  +n l+ a  r g +pl+ ++ 
  CCG91291.1 161 SGTYGIALIHSeVPNLLVGA--RRG-SPLVLGIG 191
                 88888888888444444444..555.77777766 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   7.3e-16   2.6e-12       3     121 ..      73     204 ..      71     206 .. 0.88

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 7.3e-16
    GATase_7   3 rlsi..idseagaQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllallea...............ewgeealerlnGmfAfaiwd 84 
                 r ++  i s+++a P + ++ ++l +v+nG i Ny+ l+++L + gh+f++++Dtevl++l+ +               + +++ l+++ G + +a+++
  CCG91291.1  73 RWAThgIPSDENAHPHF-DQLRHLSLVHNGVIENYQLLKQRLINLGHTFQSETDTEVLAHLIGHyyelgkeddptarliQALKRSLKEISGTYGIALIH 170
                 55555677889999999.699*****************************************99*********************************** PP

    GATase_7  85 eeekrlllaRDrlGikPLyygedkgdallfaSelkal 121
                 +e  +ll+   r    PL +g  + ++++++S + a+
  CCG91291.1 171 SEVPNLLVGARR--GSPLVLGIGN-EEYFLSSDVTAI 204
                 999887776554..5799998885.688888887776 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.3e-10   8.1e-07      34     167 ..      30     161 ..       1     182 [. 0.74

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 2.3e-10
    GATase_4  34 dGwGiafyegkaarvfkdpepsaesplaelvreypiksknvvaHiRkatqGevklenthpFvRelwgrewifAHnGdlkeykpklegrfePvGsT.... 128
                 d  Gia ++g +++v+k +     s+l +l+ + ++  ++ ++H R at+G  ++en+hp   +l  r+  + HnG +++y+    +r   +G+T    
  CCG91291.1  30 DSSGIAIFDGTKIEVVKKK--GRISELIHLLGKKQLDGRVGISHTRWATHGIPSDENAHPHFDQL--RHLSLVHNGVIENYQLLK-QRLINLGHTfqse 123
                 6679***********9876..5679999*********************************9998..889999*****9986544.4555555542110 PP

    GATase_4 129 .DsElafCelleelasrfekaepsaeeleralaelakeia 167
                  D+E ++ +l+ +  +  + +   ++ l +al+  +kei+
  CCG91291.1 124 tDTE-VLAHLIGHYYELGK-EDDPTARLIQALKRSLKEIS 161
                 0665.35666665555543.34555566666666666665 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.3e-07    0.0019      97     137 ..     342     382 ..     332     383 .. 0.90
   2 ?   -0.6   0.0      0.34   1.2e+03     113     137 ..     531     555 ..     525     556 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.3e-07
                 HHTT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE CS
       SIS_2  97 rlvrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlt 137
                 ++++++ + v + +S+sG+ a  ++a+++ak++g+kv +++
  CCG91291.1 342 KNSPMDRHTVVIAVSQSGETADTLAAVKEAKRKGLKVLGIC 382
                 668889999*****************************997 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.34
                 S--SHHHHHHHHHHHHHT-EEEEEE CS
       SIS_2 113 sGnnavvveaaeaakergmkviAlt 137
                 +G+    +  +e+ k+rg ++iA+ 
  CCG91291.1 531 DGVYDKNISNMEEIKARGGPIIAIA 555
                 56677789999************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 4041.76
//
Query:       CCG91292.1  [L=295]
Description: Glycerol-3-phosphate dehydrogenase (NAD(P)+) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-42  143.0   0.1    1.3e-41  142.2   0.1    1.4  1  NAD_Gly3P_dh_C   NAD-dependent glycerol-3-phosphate dehydroge
    7.2e-21   74.8   0.3    2.9e-14   53.3   0.0    2.2  2  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
     0.0018   17.6   0.0     0.0029   17.0   0.0    1.2  1  Calmodulin_bind  Calmodulin binding protein-like
  ------ inclusion threshold ------
       0.12   13.0   0.1       0.68   10.6   0.1    2.1  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2   0.1   2.9e-45   1.3e-41       1     140 [.     143     282 ..     143     284 .. 0.95

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 2.9e-45
                     -HHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHTSSGGGGGSTTTHHHHHHHHHSCT.HHHHHHHHHHCT--HHHHHH CS
  NAD_Gly3P_dh_C   1 DviGvelagalKNviAiaaGivdglglgdntkaalitrglaEmarlakalgakpetflglaglgDlivtctsgksRNrrfGeelgkgesleeiek 95 
                     D++G+el+galKNv+Aia G++ gl lg+n++a l+tr+laEm+rl+ a g+k+etf+gl+g+gDl++t++s ksRN+r+G++++ g  l ++ +
      CCG91292.1 143 DLVGLELGGALKNVYAIAGGLCYGLALGENAHASLLTRSLAEMTRLGVAAGGKAETFFGLSGVGDLFLTASSMKSRNFRLGMRIASGIPLTKALS 237
                     99*************************************************************************************99999998 PP

                     HHCC--HHHHHHHHHHHHHHHTT.G.HHHHHHHHHHHS---HHHH CS
  NAD_Gly3P_dh_C  96 elnqvleGvetakevyellkkkgvemplleavykilyegkspeel 140
                     + ++v+eG+ ta +v++ +   + + p+++++ykilyegk++++ 
      CCG91292.1 238 MESTVIEGYPTAFSVHKSALFSKQKKPVADEIYKILYEGKNIQAS 282
                     6669*************877777899***************9875 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   1.1e-07    0.0005       1      36 [.       2      37 ..       2      41 .. 0.90
   2 !   53.3   0.0   6.5e-18   2.9e-14      69     155 ..      39     122 ..      35     124 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.1e-07
                    -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHH CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaenghevrlwvreeelie 36
                    ki++lG G+wG ++ k+laenghe   +++ +++ e
      CCG91292.1  2 KIGILGQGKWGKTIKKLLAENGHEPLGFHHTDNTWE 37
                    79*********************9999998887765 PP

  == domain 2  score: 53.3 bits;  conditional E-value: 6.5e-18
                     T--EEEE---HHHHHHHHHHHCCC--TT-EEEE---SEET.TTEEHHHHHHHHH-S--EEEEESS--HHHHHTT--EEEEEEES-HH CS
  NAD_Gly3P_dh_N  69 gadiivlvvPsqalrevlkklkgllkkkailvsliKGieegtlkllsevieeelkeekvavlsGpslAeEvakgkptavviaskdke 155
                     + d++ +++P q++r++l++     +++ +++sl+KG+e  t k+++e+i+++ k+e+v+ lsGp++ eE+ +g p+a+v++s++++
      CCG91292.1  39 QLDCLCIAIPVQHIRQTLHRF---PNPECPVISLSKGLEITTGKRVTEIIKDVWKNENVGALSGPTFSEEILAGLPAAAVVSSEKEA 122
                     568899********9887765...569********************************************************9876 PP

>> Calmodulin_bind  Calmodulin binding protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   6.4e-07    0.0029      99     168 ..     202     272 ..     200     283 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.4e-07
  Calmodulin_bind  99 vaslgeisFtdnSswirsrkfrlgarvvk......sselgvrirEAvtepfvVkdhRgelykkhypPsleDeVwrL 168
                         +g++  t +S  ++sr+frlg+r+++        +++ ++ E+   +f V  h++ l+ k+++P   De++++
       CCG91292.1 202 LSGVGDLFLTASS--MKSRNFRLGMRIASgipltkALSMESTVIEGYPTAFSV--HKSALFSKQKKPV-ADEIYKI 272
                      5667888888888..9***********97654322235678899999999988..899*********7.6899986 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00015      0.68       1      27 [.       2      25 ..       2      37 .. 0.91
   2 ?   -0.4   0.0      0.41   1.8e+03      61      81 ..      39      59 ..      29      72 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
                   EEEEETTSHHHHHHHHHHHHTTS-GGC CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqphe 27
                   kigi+G G+ g+++ + l+++g   he
     CCG91292.1  2 KIGILGQGKWGKTIKKLLAENG---HE 25
                   7*********************...54 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.41
                   H-SEEEE-S-HHHHHHHHHHC CS
  F420_oxidored 61 eadvvvlavkpedveevlsel 81
                   + d + +a++ +++ ++l   
     CCG91292.1 39 QLDCLCIAIPVQHIRQTLHRF 59
                   5688889********999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2045.40
//
Query:       CCG91293.1  [L=212]
Description: Glycerol-3-phosphate acyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-53  179.8  13.7    4.6e-53  179.6  13.7    1.0  1  G3P_acyltransf  Glycerol-3-phosphate acyltransferase


Domain annotation for each model (and alignments):
>> G3P_acyltransf  Glycerol-3-phosphate acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.6  13.7   2.6e-57   4.6e-53       1     163 []      17     197 ..      17     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: 179.6 bits;  conditional E-value: 2.6e-57
                     HHHHHHT--HHHHHHHH.TT--GGGSTTS--SHHHHHHHH-HHHHHHHHHHHHHHHH.HHHHHHHH.............HHHHHHHHHHHS-GGC CS
  G3P_acyltransf   1 laYllGsipfayligkllkgiDirelgsgNaGatNvlrvlGkkagilvlllDllKgllavllalll.............laglaavlGHifPvfl 82 
                     l++++Gsipf++l+gk+ kgiDir lgs+N+GatNv r++G+k+g+lv++lD+lKg+++v+l+++              ++gl  ++GH+f ++l
      CCG91293.1  17 LSFICGSIPFGFLLGKA-KGIDIRLLGSKNIGATNVGRIMGWKWGLLVFFLDFLKGFIPVFLIRFHfdvhqtssdlfalICGLSSIIGHNFTPWL 110
                     589*************9.******************************************98887778888877777777*************** PP

                     TT----SHHHHHHHHHHHH...HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH.HH........HH..HHHHHHHHHHHTHHHHHHH CS
  G3P_acyltransf  83 kfkGGKGvatalGvllaldllllllallvfllvllltryvslaslvaalllpllllll......llllllllallvilrhrenikrl 163
                     k kGGKG+at++Gvllal + ++ll+l+ ++ +l++tr+vs++s++aal++p+++++l      ++++++++++l+i+rhr+nikr+
      CCG91293.1 111 KGKGGKGIATSAGVLLALMPKVFLLLLISWFGILFFTRIVSISSICAALFFPFFTFILypnnhlFFFFSIVASFLAIWRHRSNIKRI 197
                     ******************9999999999************************9999888999987789999**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1702.66
//
Query:       CCG91294.1  [L=362]
Description: Chorismate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.3e-138  459.5   0.0   4.9e-138  459.3   0.0    1.0  1  Chorismate_synt  Chorismate synthase


Domain annotation for each model (and alignments):
>> Chorismate_synt  Chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  459.3   0.0  2.7e-142  4.9e-138       1     327 []       9     353 ..       9     353 .. 0.96

  Alignments for each domain:
  == domain 1  score: 459.3 bits;  conditional E-value: 2.7e-142
                      SEEEEE-SCCSSEEEEEEE---BT-B--HHHHHHHHHHHTCTSSSSSSHHHCS-EEEEESSEETTEE-SS-EEEEEE-TTS-..SSSSSTSBE- CS
  Chorismate_synt   1 lrvttfGeShgkalgavidgvpagleldeediqkeLdrRrpgqsklttqrkEkDeveilsGvfegktlGtpiallieNkdqrskdyeeikevpR 94 
                      +r+tt+GeShgk++g+v+dg+p++++l+e+diqkeLdrRrpgqsk+ttqrkEkD +eilsG+f+g+tlGtpi +l++N+d+r++ y e++ ++R
       CCG91294.1   9 FRITTWGESHGKGVGVVVDGCPSKIPLTESDIQKELDRRRPGQSKITTQRKEKDIAEILSGTFNGMTLGTPILILVRNEDARPEAYAEMEYIYR 102
                      89******************************************************************************************** PP

                      TTSTCHHHHHHC-S.STHCCCCCTHHCHHHHHHHHHHHHHHHHT.T.TEEEEEEEEEETTE...........CHH.HHHTT-BS-CCCHHHHHH CS
  Chorismate_synt  95 pgHADltyalkYgirdlrgggrsSaReTaarvaaGavakklLke.l.gieivayvssigei...........eke.aenpvrcpdeeaaeemee 174
                      p+HAD+ty++kYgir+++gggr+SaReT++rva Gav  klL+  +   e++a+vs+++++           + + ++n +r pd+e  +++ +
       CCG91294.1 103 PSHADYTYQVKYGIRNWQGGGRASARETVGRVAGGAVGGKLLEVlYpSLEVIAWVSEVHGVksfcdpnkitkD-KiESNILRWPDSENFDNALK 195
                      *******************************************95358***********77777777777743.347789************** PP

                      HHHHHHHTT--B-EEEEEEEES--TT-SBTTTB-HHHHHHHHHHTSTTEEEEEETTGGGGGGSBHHHHS--EE.....EE.SS-TTTTEETTEE CS
  Chorismate_synt 175 aieeakkegdslGgvvevvvkgvpaGlGepvfdkldakLakalmsipAvkgveiGsGfeaaelkGseanDeiv.....lr.ktnnaGGieGGis 262
                      ++e+a+kegd++Ggv+ +vv+g+p+GlGepvfdkl+a+Laka++s+pA kg+eiGsGf+aa+++Gse+nD+++     +r  tn +GG++GGis
       CCG91294.1 196 EVEKAQKEGDTVGGVIDCVVRGMPPGLGEPVFDKLEADLAKAMLSLPASKGFEIGSGFQAARMRGSEHNDPFYmegkrVRtYTNWSGGVQGGIS 289
                      *************************************************************************666552279************ PP

                      BSS-EEEEEEE--SS--SSEEEEEBTTS-E-EEEE--S-S-S-THHHHHHHHHHHHHHHHHHHHH CS
  Chorismate_synt 263 nGepivvrvavKpipsiakeqktvdletkeevelevkgrhDpcvvpravvvveamvalvladall 327
                      nGe++++rva+Kp++++akeqktv+++++e v+l+++grhDpcv+prav++veam++lvlad++l
       CCG91294.1 290 NGENLFFRVAFKPVATLAKEQKTVTVDGEE-VHLRARGRHDPCVLPRAVPIVEAMTKLVLADHAL 353
                      ******************************.*******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2567.09
//
Query:       CCG91295.1  [L=175]
Description: Shikimate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-40  138.1   0.0    3.3e-40  137.8   0.0    1.0  1  SKI              Shikimate kinase
    1.6e-05   25.5   0.2    0.00052   20.6   0.0    2.6  2  AAA_18           AAA domain
  ------ inclusion threshold ------
      0.035   14.2   0.0      0.054   13.6   0.0    1.3  1  Cytidylate_kin2  Cytidylate kinase-like family
      0.036   13.8   0.0      0.061   13.0   0.0    1.4  1  CoaE             Dephospho-CoA kinase
      0.042   13.2   0.0      0.053   12.9   0.0    1.1  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.048   13.4   0.0        1.2    8.9   0.0    2.2  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.049   13.5   0.0       0.95    9.3   0.0    2.2  2  dNK              Deoxynucleoside kinase
       0.12   12.5   0.0        1.3    9.2   0.0    2.2  2  Gal4_dimer       Gal4-like dimerisation domain
       0.15   11.5   0.0       0.25   10.7   0.0    1.4  1  IPT              Isopentenyl transferase
        0.2   11.8   0.0        2.3    8.3   0.0    2.1  2  AAA_33           AAA domain


Domain annotation for each model (and alignments):
>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.8   0.0   1.8e-43   3.3e-40       1     145 [.      11     154 ..      11     163 .. 0.92

  Alignments for each domain:
  == domain 1  score: 137.8 bits;  conditional E-value: 1.8e-43
                 TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHH CS
         SKI   1 mGaGKstvGkllAkklglefiDlDeliekrtgksiaeifeeegeegFrelEsevlkelleeeglViatGGGavlseenrellkekgiviyLdvsleell 99 
                 mGaGKs+vG +l+++  ++++DlD++ie++++++iaeif+ +g e+Fr++E e++ +++++   ViatGGG  l++ n +llke+g ++yL++sle l 
  CCG91295.1  11 MGAGKSSVGSWLSQEKAIPVYDLDRMIEEAEKATIAEIFATKGGEYFRKKEMEMVYQVISSPPGVIATGGGTLLNPSNLSLLKEHGFLFYLQASLELLW 109
                 9************************************************************************************************** PP

                 HHHHHTTSSGGGCSCHHHHHHHHHHHHHHHHHCCSSCEEEECTSSH CS
         SKI 100 erlkadkeRPllqekskeeelleelaereplyeeaadvvvdesees 145
                 +rl+++++RPll +++++  l++ l+ere++y+ a+   ++ + +s
  CCG91295.1 110 SRLQDKTDRPLLFGENPKMTLEKLLKERESVYKAADM-AIEVDGKS 154
                 *****************88888888899999988654.44444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.9e-07   0.00052       1     114 [.       5     116 ..       5     121 .. 0.53
   2 ?   -1.5   0.0       1.9   3.5e+03      11      32 ..     127     147 ..     127     163 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.9e-07
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf....gvnlrdvakenglllevdpe......aldeskrldedkldklldaleenss..aleegknlvidghlaele 87 
                 I+l G++G+GK++++  Ls++ ++     ++ ++ a +         +      a++  + ++++  ++ + ++  ++     + g++l+  + l+ l 
  CCG91295.1   5 IVLVGMMGAGKSSVGSWLSQEKAIpvydLDRMIEEAEK---------AtiaeifATKGGEYFRKKE-MEMVYQVISSPPgvIATGGGTLLNPSNLSLL- 92 
                 89****************99965563333333333333.........3233333333333333333.3333333333332212333332222333333. PP

      AAA_18  88 seaakdikk.....vvLtaspeelleRlekRg 114
                         k     ++L+as e l+ Rl++  
  CCG91295.1  93 --------KehgflFYLQASLELLWSRLQDKT 116
                 ........2233459*************9875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.9
      AAA_18  11 KttlakeLskrlgfgvnlrdva 32 
                 K+tl k L++r+ ++++  d+a
  CCG91295.1 127 KMTLEKLLKERE-SVYKAADMA 147
                 788889998884.444444444 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     3e-05     0.054       4      63 ..       7      68 ..       4      86 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3e-05
  Cytidylate_kin2  4 IsreyGsgGetigeaLAekLglpfydreiieevakelglseeeveevde..rsrlssflskl 63
                     + + +G+g++ +g  L+++  +p+yd + + e a+++ + e  + +  e  r++  ++++++
       CCG91295.1  7 LVGMMGAGKSSVGSWLSQEKAIPVYDLDRMIEEAEKATIAEIFATKGGEyfRKKEMEMVYQV 68
                     56789**********************999999********999888886755555555555 PP

>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.4e-05     0.061       3      37 ..       5      40 ..       3      61 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.4e-05
                EEEEESTTSSHHHHHHHHHH.TT-EEEEHHHHHHHT CS
        CoaE  3 vgltGgiasGKstvanlfad.lgvpivDaDlvArqv 37
                + l G +++GKs v +++++  ++p+ D D +  ++
  CCG91295.1  5 IVLVGMMGAGKSSVGSWLSQeKAIPVYDLDRMIEEA 40
                67999**************9899*******775554 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.9e-05     0.053      24     111 ..       4      99 ..       2     121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrlp..sllpplseeealevakiasvag..kkeeekllkrrpfraphhsask.aalv..GggskpkpGeisl.ahnGvLf 111
                   +++lvG  G+GK+ + + l+  + +p  + + ++e a+ a++a+  +++  +++++++++   + +s+  +++  Ggg+  +p ++sl  ++G Lf
    CCG91295.1   4 HIVLVGMMGAGKSSVGSWLSqeKAIPVYDLDRMIEEAEKATIAEifATKGGEYFRKKEMEMVYQVISSpPGVIatGGGTLLNPSNLSLlKEHGFLF 99 
                   799*************999622689**********99999999965677788999******9999876245545599**********725689998 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00067       1.2       2      67 ..       3      76 ..       2      81 .. 0.72
   2 ?    2.3   0.0     0.072   1.3e+02      14      50 ..     127     164 ..     118     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00067
   PduV-EutP  2 kkilliGkvgsGKttLtqalkgeel..kYkktqaiefsdev.i.....DtPGeylenrklysalivtsaeadvi 67
                ++i+l+G +g+GK ++   l++e+    Y+   +ie  +++ i        Gey  ++++  + +v+s    vi
  CCG91295.1  3 RHIVLVGMMGAGKSSVGSWLSQEKAipVYDLDRMIEEAEKAtIaeifaTKGGEYFRKKEMEMVYQVISSPPGVI 76
                579*****************997752358888888766554332112134689999999888888887766666 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.072
   PduV-EutP  14 KttLtqalkgeelkYkktq.aiefsdeviDtPGeylen 50 
                 K tL + lk++e  Yk    aie+  + i+  Ge l +
  CCG91295.1 127 KMTLEKLLKERESVYKAADmAIEVDGKSIEQLGELLWS 164
                 89*************98753799999999999997755 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00053      0.95       1      27 [.       5      31 ..       5      69 .. 0.88
   2 ?    2.5   0.0     0.065   1.2e+02     124     146 ..      96     118 ..      82     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00053
                EEEEESTTSSHHHHHHHHHCCSTCEEE CS
         dNK  1 ivveGnIgaGKstlvklLskklgvkvf 27
                iv+ G +gaGKs++ + Ls++  ++v+
  CCG91295.1  5 IVLVGMMGAGKSSVGSWLSQEKAIPVY 31
                7899***************99876665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.065
                 SEEEEEE--HHHHHHHHHHCTTC CS
         dNK 124 dlliYLkasletclerikkRgre 146
                  +l YL+asle +  r++ + + 
  CCG91295.1  96 GFLFYLQASLELLWSRLQDKTDR 118
                 5678*************998765 PP

>> Gal4_dimer  Gal4-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00074       1.3      22      44 ..      27      49 ..      25      55 .. 0.89
   2 ?    0.7   0.0      0.33   5.9e+02      13      21 ..     128     136 ..     124     162 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00074
  Gal4_dimer 22 llpeeDiDnlLknkhnnflkeil 44
                ++p+ D+D+++++ +++ ++ei 
  CCG91295.1 27 AIPVYDLDRMIEEAEKATIAEIF 49
                689******************96 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.33
  Gal4_dimer  13 tqLEqlLrr 21 
                  +LE+lL++
  CCG91295.1 128 MTLEKLLKE 136
                 589**9986 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014      0.25       5      35 ..       6      36 ..       2      46 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
         IPT  5 lifGatttGKtaeaiklaketgapvivlDRv 35
                +++G  + GK+++ + l++e+++pv  lDR+
  CCG91295.1  6 VLVGMMGAGKSSVGSWLSQEKAIPVYDLDRM 36
                68999*************************7 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0013       2.3       2      35 ..       5      38 ..       5      70 .. 0.84
   2 ?    1.5   0.0      0.17   3.1e+02      94     121 ..      94     118 ..      87     142 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0013
      AAA_33  2 vllvGlpGsGKstlaerllkklgavllssdtlrr 35
                ++lvG+ G+GKs +   l ++ +  + + d +++
  CCG91295.1  5 IVLVGMMGAGKSSVGSWLSQEKAIPVYDLDRMIE 38
                689**********999999888888877777665 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.17
      AAA_33  94 rlgvpvrivvvetdeetlkeRlakRaan 121
                 ++g    + +++++ e+l +Rl+ + ++
  CCG91295.1  94 EHG---FLFYLQASLELLWSRLQDKTDR 118
                 555...35899************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1288.96
//
Query:       CCG91296.1  [L=290]
Description: Pyrroline-5-carboxylate reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-24   85.4   0.8    5.2e-24   84.5   0.5    1.6  2  P5CR_dimer     Pyrroline-5-carboxylate reductase dimerisation
    3.2e-18   66.1   0.1    8.9e-18   64.7   0.0    1.8  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
    0.00067   19.7   0.0      0.002   18.2   0.0    1.8  1  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
     0.0053   16.4   0.0     0.0074   15.9   0.0    1.3  1  ApbA           Ketopantoate reductase PanE/ApbA
     0.0069   16.6   0.0      0.012   15.8   0.0    1.4  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
  ------ inclusion threshold ------
      0.052   13.3   0.0      0.099   12.4   0.0    1.5  1  DUF4431        Domain of unknown function (DUF4431)
      0.066   12.2   0.0       0.11   11.5   0.0    1.3  1  PDH            Prephenate dehydrogenase


Domain annotation for each model (and alignments):
>> P5CR_dimer  Pyrroline-5-carboxylate reductase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.7     7e+03      26      50 ..      93     117 ..      85     128 .. 0.57
   2 !   84.5   0.5     2e-27   5.2e-24       1     102 [.     181     284 ..     181     285 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.7
                 HHHHHHTT--HHHHHHHHHHHHHHH CS
  P5CR_dimer  26 adagvklGlsreeArelaaqtvaGa 50 
                 +   v   +s  +A ++ + +vaG+
  CCG91296.1  93 QAEEVLREISAIIASKVFISVVAGL 117
                 5555555555555555555555554 PP

  == domain 2  score: 84.5 bits;  conditional E-value: 2e-27
                 CCHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHCHS..HHHHHHHH--TTSHHHHHHHHHHHTTHHHHHHHHHHHHH CS
  P5CR_dimer   1 EkqldavtalsGsgpAyvflliealadagvklGlsreeArelaaqtvaGaaklllese..paelrdkvtspgGtTiaglkeleegglraavieaveaaa 97 
                 E+++ a+tal G+gpAyv++l+  l++ + + G++  eA +l+ ++v+G+ +ll e++  p++l  +v +p+G+T+a+ +++ ++g ++++ ea+eaa+
  CCG91296.1 181 EDLMAAATALVGCGPAYVCMLMIGLIEQAKAYGFPDLEAIQLMNEMVLGTLSLLMETKrsPEKLLSEVKTPRGITEAATQVMVRKGWEDILLEAIEAAK 279
                 899*************************************************99866668*************************************** PP

                 HHHHH CS
  P5CR_dimer  98 krske 102
                 k+++ 
  CCG91296.1 280 KKAET 284
                 **986 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   3.5e-21   8.9e-18       1      97 []      18     116 ..      18     116 .. 0.92
   2 ?   -2.0   0.0       2.1   5.5e+03      21      47 ..     237     262 ..     226     284 .. 0.60

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 3.5e-21
                    EEEEETTSHHHHHHHHHHHHTTS..-GGCEEEEEESSCCCHHHHHHHHC..-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEE CS
  F420_oxidored   1 kigiiGaGnmgealasgllaaga..qpheivvansrnpekaeelaeelg..vkvtavdneeaaeeadvvvlavkpedveevlselakdalkgklvi 92 
                    +ig+iG+G+m++al++g+l +++   ++ ++ ++ r++ +++++ ee++     t+ dn e+++++d v+l+vkp ++eevl+e+ ++  + k++i
     CCG91296.1  18 RIGFIGSGKMAKALVHGFLGNNKisLENPLW-ISGRSKGSIQSFLEEFEshKIHTTLDNRELVNNTDLVFLCVKPLQAEEVLREI-SAIIASKVFI 111
                    79**********************7677777.66***************98455666****************************.********** PP

                    EESSS CS
  F420_oxidored  93 svlag 97 
                    sv+ag
     CCG91296.1 112 SVVAG 116
                    **997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.1
                    TTS-GGCEEEEEESSCCCHHHHHHHHC CS
  F420_oxidored  21 agaqpheivvansrnpekaeelaeelg 47 
                    + ++p++++    ++p  ++e+a ++ 
     CCG91296.1 237 TKRSPEKLL-SEVKTPRGITEAATQVM 262
                    444555555.44555555555555544 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   7.6e-07     0.002      10      84 ..      14      90 ..       6     111 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 7.6e-07
                  .TT-EEEEES-SHHHHHHHHHHHCCT-....CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SS CS
  Shikimate_DH 10 lkekkvlliGaGemaelvakhLlakgv....kkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisata 84
                  l+++++  iG G+ma+ +++ +l ++     + + + +R+    +++ ee++++  ++++  + +el+++ d+v+ +++
    CCG91296.1 14 LRHSRIGFIGSGKMAKALVHGFLGNNKisleNPLWISGRSKGSIQSFLEEFESH--KIHTTLDNRELVNNTDLVFLCVK 90
                  67899***********9999988775412224589****************888..6666677789*********9875 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.9e-06    0.0074      61     101 ..      72     113 ..      23     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.9e-06
                 H..SCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEEEEEE CS
        ApbA  61 e..ekselepidlvivtvKayqteealeeikplldpntvvlll 101
                 +  +++   + dlv+++vK +q+ee+l+ei ++++++ v +++
  CCG91296.1  72 TldNRELVNNTDLVFLCVKPLQAEEVLREISAIIASK-VFISV 113
                 23445778899***********************998.44444 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.7e-06     0.012       1      79 [.      18     104 ..      18     125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.7e-06
                    EEEEE--SHHHHHHHHHH.....HHTT-EEEEE-SSHHHHHHHHHTT....EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnl.....lkagykvavynrtkekveelvaeg....akaaesieelvasldvvitmvkagkavdeviegllea 79 
                    +igfiG G+M + ++  +     ++ +  + +  r+k +++++++e     ++++ + +elv++ d+v+++vk   + +ev++++ + 
     CCG91296.1  18 RIGFIGSGKMAKALVHGFlgnnkISLENPLWISGRSKGSIQSFLEEFeshkIHTTLDNRELVNNTDLVFLCVKP-LQAEEVLREISAI 104
                    59***********998774444467788999**********999996666688888899*************96.5567888875543 PP

>> DUF4431  Domain of unknown function (DUF4431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.9e-05     0.099      12      34 ..     167     189 ..     164     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.9e-05
     DUF4431  12 sqlksllGKeVkVtGkLfhaqtg 34 
                  +l sllG+ ++++++L++a t+
  CCG91296.1 167 HYLFSLLGHPIQISEDLMAAATA 189
                 57778***************997 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.2e-05      0.11      37      86 ..      74     122 ..      51     140 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.2e-05
                 ES-GGGGCCGSEEEE-S-GGGHHHHHHHHHHHS-TT-EEEE--S--CHHH CS
         PDH  37 tddieavkeadivvlavPvevilevlkelaphlkedalitDvgsvKekvv 86 
                 ++  e v++ d+v+l+v + + +evl+e++ ++  ++ i  v++   k +
  CCG91296.1  74 DN-RELVNNTDLVFLCVKPLQAEEVLREISAIIASKVFISVVAGLTIKNI 122
                 44.689***************************99999988887654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2346.65
//
Query:       CCG91297.1  [L=220]
Description: Predicted O-methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-59  198.6   0.0    8.4e-59  198.3   0.0    1.0  1  Methyltransf_3   O-methyltransferase
    7.7e-16   59.0   0.0    1.1e-15   58.6   0.0    1.2  1  Methyltransf_24  Methyltransferase domain
    0.00043   20.1   0.0    0.00085   19.1   0.0    1.4  2  Methyltransf_31  Methyltransferase domain
    0.00045   20.9   0.0    0.00095   19.8   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.021   14.5   0.0    1.4  2  GCD14            tRNA methyltransferase complex GCD14 subunit
       0.03   14.2   0.0      0.055   13.4   0.0    1.4  1  Methyltransf_18  Methyltransferase domain
      0.077   12.3   0.0       0.11   11.9   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
        0.1   12.2   0.1        1.5    8.3   0.0    2.2  2  TrmK             tRNA (adenine(22)-N(1))-methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.3   0.0   3.8e-62   8.4e-59       9     211 ..      24     218 ..      19     219 .. 0.97

  Alignments for each domain:
  == domain 1  score: 198.3 bits;  conditional E-value: 3.8e-62
                     --HHHHHHHHHTTTST.TGGGS--HHHHHHHHHHHHHHT--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEE CS
  Methyltransf_3   9 ehellkeLreatakktdlsemevsvdegqfLslLvklvnakrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekiel 103
                      ++l+++Lr++t    ++sem ++++e  fLs+Lv   nak  +e+G+ftG   +a+a al + Gk+++++i+++  ++a k+++ ag+++kie+
      CCG91297.1  24 SDPLMQKLRRETLALGEISEMAIPPEEESFLSILVAACNAKTAIEVGTFTGIGSIAIARALAQSGKLVCCEINPQWIALASKYWKEAGLEHKIEV 118
                     46799****************************************************************************************** PP

                     EES-HHHHHHHHHTSSS---EEEEEE-S-GGGHHHHHHHHHHTEEEEEEEEEE-TTGGGGGG-SS--SHHHHH.....HHHHHHHHTT-TTEEEE CS
  Methyltransf_3 104 iegdalkvLeelvkdkklpefDfifvDaDkssyvnyyeklleLvkvGgliaiDntLWeGkvveeddeeakalreyravllelnkklaeDprveis 198
                     + g+alk++++l +d     fDf+f+DaDk++y nyye ll  +++ gl+++Dn +W+G v++++d+ ++ l+     l +ln kl++D r+e +
      CCG91297.1 119 KIGPALKTIQDLEEDL---RFDFAFIDADKENYENYYELLLPKMRQNGLLVFDNMFWKGRVIRPEDSDKDSLV-----LSRLNDKLSNDTRIESV 205
                     *************999...5***********************************************999999.....9**************** PP

                     EE-SBT-EEEEEE CS
  Methyltransf_3 199 llsvgDGitLvrk 211
                     ll++ DG++++rk
      CCG91297.1 206 LLPIADGVVIARK 218
                     ************9 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   4.8e-19   1.1e-15       1     105 [.      67     169 ..      67     170 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 4.8e-19
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaee.aaalareaglddrvrlikadseealasla.agsiDllfiDgghaaeavledleall 92 
                      +E+G++ G  +++++ral + g+  lv+++ +p++ + a+++++eagl++ +++  +++ +++++l+ + ++D++fiD++  +e + +++e+ll
       CCG91297.1  67 IEVGTFTGIGSIAIARALAQSGK--LVCCEINPQWIAlASKYWKEAGLEHKIEVKIGPALKTIQDLEeDLRFDFAFIDAD--KENYENYYELLL 156
                      69******************995..********733358999999**********************7779*******87..99********** PP

  Methyltransf_24  93 prlapggvvlfdD 105
                      p+++++g+++fd+
       CCG91297.1 157 PKMRQNGLLVFDN 169
                      ************8 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.8   6.3e+03      74      92 ..      12      30 ..       8      39 .. 0.69
   2 !   19.1   0.0   3.8e-07   0.00085       5     112 ..      64     170 ..      62     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.8
  Methyltransf_31 74 kfDlilsnevlnaladpdk 92
                      +D+ +++ + +  + ++k
       CCG91297.1 12 LYDYAICHRTYASDPLMQK 30
                     4888888877765555554 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 3.8e-07
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.leklledekfDlilsnevlnaladpdkilee 96 
                      ++ +++G+ tG  ++++a+ l + +++v  +i+++ i lA +  ++ gl+  +e+++g++ + ++ l ed +fD+ + +   ++  + ++++e 
       CCG91297.1  64 KTAIEVGTFTGIGSIAIARALAQSGKLVCCEINPQWIALASKYWKEAGLEhKIEVKIGPALKtIQDLEEDLRFDFAFID---ADKENYENYYEL 154
                      678999*9999999****99999***************************************77755899999999988...777888888888 PP

  Methyltransf_31  97 iervlkpggilliedp 112
                      +   ++++g l+ +++
       CCG91297.1 155 LLPKMRQNGLLVFDNM 170
                      8888888888887765 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.2e-07   0.00095       2      70 ..      67     141 ..      66     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.2e-07
                      EEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCG.BS..SSTTTEEEEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeegl..nvefvqgdaed.lp..fedgsfDlvvs 70 
                      +++G+ tG  ++a+a++l +++k+++++i+++ ++ a +  +e+gl  ++e+  g a + ++  +ed +fD+ ++
       CCG91297.1  67 IEVGTFTGIGSIAIARALaQSGKLVCCEINPQWIALASKYWKEAGLehKIEVKIGPALKtIQdlEEDLRFDFAFI 141
                      589999***********9769**********************99988888888877442333236669999887 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       4.9   1.1e+04       9      21 ..       9      21 ..       8      22 .. 0.88
   2 ?   14.5   0.0   9.4e-06     0.021      42      98 ..      64     120 ..      51     146 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 4.9
       GCD14  9 tPeLWtlaLphrt 21
                t eL+  a+ hrt
  CCG91297.1  9 TKELYDYAICHRT 21
                7899999999*99 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 9.4e-06
       GCD14  42 svvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvth 98 
                   ++e Gt +g  s aiar++a  G+l   e   q +  a + ++e +l++ + v+ 
  CCG91297.1  64 KTAIEVGTFTGIGSIAIARALAQSGKLVCCEINPQWIALASKYWKEAGLEHKIEVKI 120
                 5789****99999**************************************999986 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.4e-05     0.055      17      82 ..      65     131 ..      54     137 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.4e-05
  Methyltransf_18  17 rvaDiGtDHgylpiylvke.gkakkviasDinegplekakeniekagledkievrlsdGleklkeee 82 
                      + + +Gt  g+ +i++++   +  k + ++in++ ++ a +  ++agle+kiev ++  l+++++ e
       CCG91297.1  65 TAIEVGTFTGIGSIAIARAlAQSGKLVCCEINPQWIALASKYWKEAGLEHKIEVKIGPALKTIQDLE 131
                      66677777777666666542456789************************************98654 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.7e-05      0.11      42     107 ..      57     123 ..      49     160 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.7e-05
                      H--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--T CS
  Ubie_methyltran  42 lvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqana 107
                      lva  +++++++v + tg  ++++++++ ++gk+v ++in++ +  + k  ke g   +ie   + a
       CCG91297.1  57 LVAACNAKTAIEVGTFTGIGSIAIARALAQSGKLVCCEINPQWIALASKYWKEAGLEhKIEVKIGPA 123
                      566777889999*999**99*********************************99876777666655 PP

>> TrmK  tRNA (adenine(22)-N(1))-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.046     1e+02      62      87 ..      62      87 ..      57      91 .. 0.84
   2 ?    8.3   0.0   0.00068       1.5      23      66 ..      89     132 ..      81     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.046
        TrmK 62 ekedeidviviaGmGgalIaeILeeg 87
                +++  i+v + +G+G   Ia+ L++ 
  CCG91297.1 62 NAKTAIEVGTFTGIGSIAIARALAQS 87
                6677899**************99986 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00068
        TrmK  23 vaiagevnegplesAkknvkkskleekievrlgdGlavlekede 66 
                   +  e+n    + A k  k+++le+kiev+ g  l+ +++ +e
  CCG91297.1  89 KLVCCEINPQWIALASKYWKEAGLEHKIEVKIGPALKTIQDLEE 132
                 56889999999****************************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1738.47
//
Query:       CCG91298.1  [L=269]
Description: Thioredoxin domain-containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-26   91.2   0.0    5.7e-26   90.5   0.0    1.4  1  Thioredoxin    Thioredoxin
    2.6e-07   31.1   0.1    7.2e-06   26.4   0.0    2.7  2  Thioredoxin_2  Thioredoxin-like domain
    0.00036   20.5   0.0    0.00077   19.5   0.0    1.5  1  Thioredoxin_3  Thioredoxin domain
    0.00078   19.7   0.0     0.0031   17.8   0.0    1.9  2  Thioredoxin_8  Thioredoxin-like
    0.00096   18.9   0.0     0.0018   18.0   0.0    1.6  1  Redoxin        Redoxin
     0.0012   18.7   0.1     0.0062   16.5   0.0    2.1  2  AhpC-TSA       AhpC/TSA family
     0.0055   16.9   0.0      0.012   15.9   0.0    1.6  1  ANAPC3         Anaphase-promoting complex, cyclosome, subunit
  ------ inclusion threshold ------
      0.028   14.7   0.0       0.18   12.2   0.0    2.2  2  TPR_20         Tetratricopeptide repeat
      0.038   14.2   0.0      0.085   13.1   0.0    1.6  1  Thioredoxin_7  Thioredoxin-like
      0.092   13.0   0.0        0.5   10.6   0.0    2.2  2  Glutaredoxin   Glutaredoxin
      0.096   12.5   0.0       0.15   11.8   0.0    1.4  1  DSBA           DSBA-like thioredoxin domain
       0.22   11.3   0.6       0.71    9.7   0.1    2.0  2  Thioredoxin_9  Thioredoxin
       0.28   11.1   1.9       0.65    9.9   0.0    2.7  4  TPR_1          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   4.1e-29   5.7e-26       8     103 .]       6     103 ..       1     103 [. 0.94

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 4.1e-29
                  HHHHHHHTT..TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHHHH CS
  Thioredoxin   8 enFeeevak..ekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaaflkk 103
                  ++Fe+ev +  +  +v+v+F+A wCg+C++l+P le+la e ++k  lakv+vde+e +a  y+v+giP +++f +g+e ++++g ++k++++++l+k
   CCG91298.1   6 NDFEQEVIHrsKTIPVVVDFWAAWCGPCRMLSPLLEELAAEAQGKWDLAKVNVDEQEAVAVAYGVSGIPDVRIFVDGEEKDRFVGLQPKAAIKSWLEK 103
                  6799999985556689******************************************************************************9975 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   5.3e-09   7.2e-06       7     109 .]      20     101 ..      15     101 .. 0.90
   2 ?    0.0   0.0      0.84   1.2e+03      42      65 ..     122     145 ..     102     202 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 5.3e-09
  Thioredoxin_2   7 pvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPt.ivfldgkeivarlpGyvp 101
                    pv+v+f++ +C+ C+ l   l+el                 ++a+  w  + ++     ++e++++a +ygv+g P+  +f dg+ + +r +G+ p
     CCG91298.1  20 PVVVDFWAAWCGPCRMLSPLLEEL----------------AAEAQGKWDLAKVN-----VDEQEAVAVAYGVSGIPDvRIFVDGE-EKDRFVGLQP 93 
                    89**************99999888................46788999999999.....999999************667*****.999******* PP

  Thioredoxin_2 102 aeeleall 109
                    ++ ++ +l
     CCG91298.1  94 KAAIKSWL 101
                    *9998876 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.84
  Thioredoxin_2  42 lkpsfepkavaiwcakekkkafkd 65 
                     + +f++++va+ ++kek+++ ++
     CCG91298.1 122 EQGKFHEAIVAFEKEKEKPENPQE 145
                    566788888899999988877776 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.6e-07   0.00077      10      76 .]      30     102 ..      19     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.6e-07
                    STTCHHHHHHHHHHCHCCTCECEEECC.TTHHHH..HHCT-SSSSEE..ECT..TCEEEESS---CCHHHHHHH CS
  Thioredoxin_3  10 CakCpklekavkeaaaekgikaevekv.tdfeei..ekygVmsvPal..vid..gkvvvsGkvpseeeirklle 76 
                    C  C+ l+ +++e+aae + k ++ kv  d +e     ygV  +P +  ++d  +k +++G +  ++ i+++le
     CCG91298.1  30 CGPCRMLSPLLEELAAEAQGKWDLAKVnVDEQEAvaVAYGVSGIPDVriFVDgeEKDRFVG-LQPKAAIKSWLE 102
                    999***************9999999988677776699*********98899944456799*.777888888875 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.2e-06    0.0031       4      47 ..      21      62 ..      19      68 .. 0.91
   2 ?    2.6   0.0      0.12   1.7e+02      60      86 ..      50      76 ..      44      82 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.2e-06
                   EEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-H CS
  Thioredoxin_8  4 vlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkke 47
                   v++ f+a wc pc+   p l el  + +   k+ +  v++d++e
     CCG91298.1 21 VVVDFWAAWCGPCRMLSPLLEELAAEAQ--GKWDLAKVNVDEQE 62
                   89***********************999..99999999999975 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.12
                   TSEE.EE-TT-HHHHTT-S--TT-SEE CS
  Thioredoxin_8 60 pwlsvpfddkkrnklkkkynvkaiPtl 86
                   +w    ++ +++++++  y+v++iP +
     CCG91298.1 50 KWDLAKVNVDEQEAVAVAYGVSGIPDV 76
                   677778899999*************76 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.3e-06    0.0018      30      93 ..      20      82 ..       9     130 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.3e-06
                EEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH.TT-TSEEEE-T CS
     Redoxin 30 kvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk.eglkfpvlsDg 93
                +vvv f+++ +c++C+   p le+la++ +++  d   v++d+ + v  + g    +++++++Dg
  CCG91298.1 20 PVVVDFWAA-WCGPCRMLSPLLEELAAE-AQGKWDLAKVNVDEQEAVAVAYGVsGIPDVRIFVDG 82
                699******.******************.999999999999999998777776444445556664 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.5e-06    0.0062      27      73 ..      20      64 ..       3      85 .. 0.87
   2 ?   -0.5   0.0      0.79   1.1e+03      78      92 ..     135     160 ..      88     164 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.5e-06
                EEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHH CS
    AhpC-TSA 27 pvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspesh 73
                pvv+ f+++ wc +C+   p l++l+ e +  + ++  v+vd++e++
  CCG91298.1 20 PVVVDFWAA-WCGPCRMLSPLLEELAAEAQ-GKWDLAKVNVDEQEAV 64
                8********.******************99.5689999999998865 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.79
                 HH-H............SSEEEE-TTS CS
    AhpC-TSA  78 ekes...........lnfpllsDeeg 92 
                 ++++            +f llsD+++
  CCG91298.1 135 KEKEkpenpqefliyAKFLLLSDPQK 160
                 22224445555555566666777665 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.5e-06     0.012      28      79 ..     114     165 ..      99     174 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.5e-06
                 HH.HHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  28 ll.AlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaL 79 
                 ++ Al l+++g++++A+  ++k k+++++++  +++A+ ll L+  ++A+++L
  CCG91298.1 114 WKtALDLFEQGKFHEAIVAFEKEKEKPENPQEFLIYAKFLL-LSDPQKALSVL 165
                 54499*********************************988.77777777777 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.3   1.7e+03      23      42 ..     111     130 ..      96     133 .. 0.78
   2 ?   12.2   0.0   0.00013      0.18      33      88 ..     211     266 ..     197     268 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.3
      TPR_20  23 darldlAlallaagryeeAl 42 
                 +++ + Al l+++g+  eA+
  CCG91298.1 111 KTKWKTALDLFEQGKFHEAI 130
                 56778899999999999887 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00013
      TPR_20  33 laagryeeAleqLleilkrdrkweddaarkqllkifealgsqdplvakyRrkLssl 88 
                 +++ + e+ l + +++l  +++  ++ + k++  +f  lg+++pl  ky r  s++
  CCG91298.1 211 IKKLDIEKGLFNWISLLHINKNIGEGLVLKAVRNLFRYLGPRHPLSLKYSRAFSTA 266
                 556677888888899***********************************999886 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.1e-05     0.085      13      64 ..      14      62 ..       8      80 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.1e-05
                   HHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S- CS
  Thioredoxin_7 13 aaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterd 64
                   ++++ +pv v+f a+wc++C+ l   +++    ++ +++k  l +v+v+e +
     CCG91298.1 14 HRSKTIPVVVDFWAAWCGPCRMLSPLLEEL--AAE-AQGKWDLAKVNVDEQE 62
                   678999**************9987665544..333.4555555555555555 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.1   1.6e+03      36      54 ..       7      23 ..       2      24 .. 0.76
   2 ?   10.6   0.0   0.00036       0.5       4      58 ..      25      83 ..      21      84 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.1
                  HHHHHHHHHHTSSSSSEEE CS
  Glutaredoxin 36 eireelkelsgvrtvPqvf 54
                  ++ +e+ ++s  +t+P+v+
    CCG91298.1  7 DFEQEVIHRS--KTIPVVV 23
                  5788898884..6999996 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00036
                  EESTSSHHHHHHHHHHHHTTGG......EEEEEGCCSHHHHHHHHHHHTSSSSS..EEEETTE CS
  Glutaredoxin  4 ftkptCpyCkkakrlLkelgvk......feeidvdkdeeireelkelsgvrtvP..qvfidgk 58
                  f   +C+ C++   lL+el ++       + ++vd+ e++  +     gv+ +P  ++f+dg+
    CCG91298.1 25 FWAAWCGPCRMLSPLLEELAAEaqgkwdLAKVNVDEQEAVAVA----YGVSGIPdvRIFVDGE 83
                  55689**************977545545777777775433333....3777777335567775 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.15     146     185 ..      51      94 ..      37     102 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
                 SHHHHHHHHHHHHHHHHTT-SSSSEEEE..TTC..EEEESSSSH CS
        DSBA 146 seavkeavrentaaaqslgvtGvPtvvv..dgk..rmvfGadrl 185
                  + +k  v+e++a a+++gv+G+P v +  dg+    ++G ++ 
  CCG91298.1  51 WDLAKVNVDEQEAVAVAYGVSGIPDVRIfvDGEekDRFVGLQPK 94 
                 4667889*****************98666688766677777765 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00051      0.71      46      90 ..      22      68 ..       3     102 .. 0.68
   2 ?   -0.6   0.1      0.77   1.1e+03      11      48 ..     109     149 ..     101     151 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00051
                   EE.E--TT-HHHHHHHHHHHHHH.HH-TTEEEEEE-HHHHHHHTTTT CS
  Thioredoxin_9 46 lv.ltedwCgDaavnvPvlakia.elnpnievkillrdenlelmdqy 90
                   +v + + wCg +++  P l+++a e++ + ++  +  de++ +   y
     CCG91298.1 22 VVdFWAAWCGPCRMLSPLLEELAaEAQGKWDLAKVNVDEQEAVAVAY 68
                   3337789**************98355556677667777766666665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.77
                    S-HHHHHHHHHHHHHHHHH---HH...HHHT--S-EEEEEE CS
  Thioredoxin_9  11 mtkenkermlrvykkvelseetee...kiksiekklkilvl 48 
                     +k+++++ l++ ++ +++e   +   + ++ e+++++l+ 
     CCG91298.1 109 GQKTKWKTALDLFEQGKFHEAIVAfekEKEKPENPQEFLIY 149
                    56678999999999999999988865444445566677776 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.3   3.2e+03      10      20 ..      44      54 ..      43      56 .. 0.81
   2 ?    9.9   0.0   0.00047      0.65      11      26 ..     120     135 ..     117     135 .. 0.90
   3 ?   -3.2   0.0       6.5   8.9e+03      13      21 ..     154     162 ..     152     163 .. 0.73
   4 ?   -3.8   0.1       9.8   1.4e+04      19      23 ..     178     182 ..     177     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.3
                HHHHTT-HHHH CS
       TPR_1 10 ayfklgkydeA 20
                a   +gk+d A
  CCG91298.1 44 AAEAQGKWDLA 54
                56789****99 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00047
                 HHHTT-HHHHHHHHHH CS
       TPR_1  11 yfklgkydeAleyyek 26 
                 +f++gk+ eA+ ++ek
  CCG91298.1 120 LFEQGKFHEAIVAFEK 135
                 899***********98 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.5
                 HTT-HHHHH CS
       TPR_1  13 klgkydeAl 21 
                  l ++++Al
  CCG91298.1 154 LLSDPQKAL 162
                 677888887 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 9.8
                 HHHHH CS
       TPR_1  19 eAley 23 
                 eA+++
  CCG91298.1 178 EAIKC 182
                 89999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2141.00
//
Query:       CCG91299.1  [L=64]
Description: hypothetical protein MFUM_1020022 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 464.47
//
Query:       CCG91300.1  [L=54]
Description: hypothetical protein MFUM_1020023 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       166  (0.00925874); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 366.22
//
Query:       CCG91301.1  [L=328]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-28  100.2   3.9    1.5e-24   86.6   0.1    2.0  2  NosD             Periplasmic copper-binding protein (NosD)
    2.3e-27   95.8  14.7    5.6e-16   58.8   7.4    2.2  2  Beta_helix       Right handed beta helix region
    0.00096   18.1   0.1     0.0027   16.7   0.1    1.7  1  Chondroitinas_B  Chondroitinase B


Domain annotation for each model (and alignments):
>> NosD  Periplasmic copper-binding protein (NosD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.6   1.7e-06      0.01      39     103 ..      92     163 ..      85     169 .. 0.81
   2 !   86.6   0.1   2.5e-28   1.5e-24      15     141 ..     170     300 ..     161     306 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.7e-06
        NosD  39 dgilldnssnntitgntienl.......ryGihlensesntiedntlssnesGialmsssnntlenNtisnn 103
                 + +l  +s++++i+g +++n+        +++ l + +++ ie n +++n   i+  + +++t+ nN+i + 
  CCG91301.1  92 YEMLRIESDGVRISGIVFRNSgmsysidIAALKLLKGKNCQIEANRFENNFFSIYCANAQECTVANNEIVGH 163
                 555667889999999998888887777777788888888999999999999999999999999999999875 PP

  == domain 2  score: 86.6 bits;  conditional E-value: 2.5e-28
        NosD  15 rgngiqlensegseisnneisnsrdgilldnssnntitgn.tienlryGihlensesntiedntlssnesGialmsssnntlenNtisnnen...yGil 109
                 + ngi+l++ + ++i +n+++  rdgi+++  ++  ++gn  i nlryG+h++ s++++++ n +++n++G+a+m s++  +e+N  +nn++   yG l
  CCG91301.1 170 SANGIHLWSCQRMKIHGNRVQGHRDGIYFEFVTESLVEGNqSIGNLRYGLHFMFSNDDVYRTNLFERNGAGVAVMFSKRILMEGNQYRNNWGptsYGLL 268
                 579*************************************778888********************************99******************* PP

        NosD 110 lsdssnntisnNtisnnnkGiflensssntit 141
                 l+ ++++ i++N +++n ++i+++++ +n+++
  CCG91301.1 269 LKSIDDSLIRRNLFVRNTTAIRFDEAIRNKLK 300
                 *************************9888875 PP

>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   7.4   9.4e-20   5.6e-16      12     157 ..     103     255 ..      94     256 .. 0.88
   2 !   49.1   0.7   8.9e-17   5.3e-13       1     122 [.     172     293 ..     172     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 9.4e-20
                 EEESEEEES-......SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT-S-EEES-EEE---......SEEE-TT--S--EEES-EEES-SS-SEE-T CS
  Beta_helix  12 tiknntisns......ggyGiylrgssnvvienneiannsgsGiyilgssnntisnntisdnn......gggialfgasnnlienneitdnggsGiyln 98 
                  i++  ++ns        ++++l  ++n+ ie n+++n +++ iy  +++++t+ nn+i ++       + gi+l   +++ i +n++   ++ Giy++
  CCG91301.1 103 RISGIVFRNSgmsysiDIAALKLLKGKNCQIEANRFEN-NFFSIYCANAQECTVANNEIVGHAisegasANGIHLWSCQRMKIHGNRVQGHRD-GIYFE 199
                 5555555555665556778999999*************.********************77777777789*********************99.***** PP

                 T-S--EEES-EEESTT--SEE---TT---EEES-EEES-SSEEEE-TT-SS--EEES-E CS
  Beta_helix  99 yssnntienNiidnnagsGividdsssnvtvtnNtitnnkgaGiavvgsssnvtvrnNt 157
                   +   +e+N+  +n ++G++++ s+ + + + N +  n+ aG+av++s++ + +++N+
  CCG91301.1 200 FVTESLVEGNQSIGNLRYGLHFMFSN-DDVYRTNLFERNG-AGVAVMFSKR-ILMEGNQ 255
                 99************************.5558********7.**********.**99997 PP

  == domain 2  score: 49.1 bits;  conditional E-value: 8.9e-17
                 -SEEE-SS-E.EEESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-...SEE CS
  Beta_helix   1 sgisingssnvtiknntisnsggyGiylrgssnvvienneiannsgsGiyilgssnntisnntisdnngggialfgasnnlienneitdnggs...Giy 96 
                 +gi++++++  +i +n +++ +++Giy++  +  ++e+n   +n  +G++   s++ + + n +++n+  g+a++ +++ l+e+n  ++n+g    G+ 
  CCG91301.1 172 NGIHLWSCQRMKIHGNRVQG-HRDGIYFEFVTESLVEGNQSIGNLRYGLHFMFSNDDVYRTNLFERNG-AGVAVMFSKRILMEGNQYRNNWGPtsyGLL 268
                 58999999999999999999.89999999999999998888888999999999999999999999999.999999999999999999999555555999 PP

                 -TT-S--EEES-EEESTT--SEE--- CS
  Beta_helix  97 lnyssnntienNiidnnagsGividd 122
                 l++ ++  i++N +  n+  +i +d+
  CCG91301.1 269 LKSIDDSLIRRNLFVRNT-TAIRFDE 293
                 999999999999999999.8887776 PP

>> Chondroitinas_B  Chondroitinase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   4.5e-07    0.0027       5     253 ..      43     287 ..      40     292 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.5e-07
                      HHHHHHHHH--TT-EEEE-SEEEET-EEEE-S--BTTB-EEEEESSTTSEEEEES-E...EEE-SSSEEEES-EEEE.E...---TTT--TTS. CS
  Chondroitinas_B   5 keleeavkeakpGdeivlknGvykdvqlkfkgeGteekPivlkaetaGkvfieGesk...lklsGeyLvvkglyFkn.Gytpkkaviefksdd. 93 
                      ++l++a+ +a+pGd +vl+ Gvy++  l +        Piv++   +G  +i+Ge +   l+++ + + ++g+ F+n G++ +  + + k  + 
       CCG91301.1  43 STLRSALAAAQPGDRLVLQSGVYREGPLLIR------SPIVIEG--EGWPVIDGEKRyemLRIESDGVRISGIVFRNsGMSYSIDIAALKLLKg 128
                      6899*********************999885......7***976..589999**97533388999***********967888888888886440 PP

                      --S.SSS-EEES-EEES--SS-S-SEEE---TT--S-EEES-EEE---SSS-SE........EE-S--EEES-EE.EE---SSS---SEEE-.. CS
  Chondroitinas_B  94 ekl.anysrvtncvieeFteadrdekdtwveleGkhneldhcyiagksnfgptvrvflkgneninnyHkiknnfFGsrPrkgGpagetiqlGds 186
                      ++   + +r+ n+ ++ +    ++ +    e+ G+  ++++   a+ +      r+ ++gn+       i   f  +    g ++ + ++ G  
       CCG91301.1 129 KNCqIEANRFENNFFSIYCANAQECTVANNEIVGH--AISEGASANGIHLWSCQRMKIHGNRVQGHRDGIYFEFVTESLVEGNQSIGNLRYG-- 218
                      33334566777777776665555555555555554..578888888888888889999999977777789999998888888888999****.. PP

                      SSTT-B---EEES-EEEEE-SSSEEEEEES...BT-EEES-EEES-SSEEEEEE-SS-EEES-EEEE-SS CS
  Chondroitinas_B 187 ytsmtpsrtlvdnnlFercngeveiissks...nenvfknnvfleseGslvlRHGnyavidgnvfigndn 253
                         m         nlFer  + v ++ sk    + n+++nn    s G l l+  +   i +n+f+ n+ 
       CCG91301.1 219 LHFMFSNDDVYRTNLFERNGAGVAVMFSKRilmEGNQYRNNWGPTSYG-LLLKSIDDSLIRRNLFVRNTT 287
                      5555555555689****************644478******9999999.5688999999******99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2158.80
//
Query:       CCG91302.1  [L=269]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1991.23
//
Query:       CCG91303.1  [L=64]
Description: hypothetical protein MFUM_1020026 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       167  (0.00931452); expected 358.6 (0.02)
Passed bias filter:                      148  (0.00825478); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 507.30
//
Query:       CCG91304.1  [L=58]
Description: hypothetical protein MFUM_1020027 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 438.37
//
Query:       CCG91305.1  [L=92]
Description: hypothetical protein MFUM_1020028 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.68   10.2   5.4          3    8.2   0.3    3.2  3  Se-cys_synth_N  Selenocysteine synthase N terminal


Domain annotation for each model (and alignments):
>> Se-cys_synth_N  Selenocysteine synthase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2     0.036   6.4e+02       2       7 ..       2       7 ..       1       7 [. 0.88
   2 ?    2.3   0.0     0.011     2e+02      15      27 ..      41      53 ..      24      53 .. 0.87
   3 ?    8.2   0.3   0.00017         3       5      25 ..      72      92 .]      72      92 .] 0.88

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.036
  Se-cys_synth_N 2 RsLPsV 7
                   Rs+Ps+
      CCG91305.1 2 RSIPSI 7
                   9****7 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.011
  Se-cys_synth_N 15 earallaalpRal 27
                     a+++la+l+ +l
      CCG91305.1 41 GAQDALASLGDPL 53
                    5899*****9986 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00017
  Se-cys_synth_N  5 PsVDaLLtalearallaalpR 25
                    P+VDaLL+  ++  l a+ pR
      CCG91305.1 72 PRVDALLQKIDLLSLFASPPR 92
                    9*******9999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       173  (0.00964917); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 704.33
//
Query:       CCG91306.1  [L=146]
Description: hypothetical protein MFUM_1020029 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1019.52
//
Query:       CCG91307.1  [L=240]
Description: putative ABC transporter [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-25   90.7   0.0    2.2e-25   89.7   0.0    1.5  2  ABC_tran     ABC transporter
    3.3e-15   56.7   0.2    1.2e-06   28.6   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    3.9e-06   26.5   0.0     0.0077   15.7   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
    9.2e-06   25.6   0.0    1.5e-05   24.9   0.0    1.3  1  AAA_15       AAA ATPase domain
    2.1e-05   25.1   0.2      4e-05   24.2   0.2    1.4  1  AAA_23       AAA domain
     0.0001   21.9   0.0     0.0002   21.0   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
    0.00053   20.3   0.0    0.00086   19.6   0.0    1.5  1  AAA_22       AAA domain
     0.0045   17.4   0.0     0.0061   17.0   0.0    1.5  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.027   14.2   0.0      0.066   12.9   0.0    1.6  2  AAA_30       AAA domain
      0.027   14.2   0.0       0.15   11.8   0.0    1.9  1  AAA_11       AAA domain
      0.036   14.0   0.0      0.058   13.3   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
      0.043   13.4   0.0       0.16   11.5   0.0    1.9  2  AAA_25       AAA domain
      0.053   13.9   0.0       0.16   12.4   0.0    1.8  2  AAA          ATPase family associated with various cellular a
      0.061   13.4   0.1          2    8.4   0.1    2.7  3  AAA_14       AAA domain
      0.084   12.8   0.1       0.28   11.1   0.0    1.8  2  NACHT        NACHT domain
        0.1   12.6   0.0       0.34   10.9   0.0    1.8  2  AAA_5        AAA domain (dynein-related subfamily)
       0.11   12.2   0.0       0.15   11.7   0.0    1.3  1  SRP54        SRP54-type protein, GTPase domain
       0.12   12.5   0.0       0.24   11.6   0.0    1.6  1  AAA_33       AAA domain
       0.14   11.7   0.0       0.55    9.8   0.0    1.8  2  AAA_27       AAA domain
       0.15   12.7   0.0       0.64   10.6   0.0    2.0  2  AAA_18       AAA domain
       0.15   12.4   0.0       0.38   11.1   0.0    1.6  2  AAA_19       AAA domain
       0.19   11.7   0.0        0.4   10.7   0.0    1.5  1  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
        0.2   11.2   0.1       0.36   10.4   0.1    1.4  1  cobW         CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.0   2.9e-28   2.2e-25       1     137 []      17     156 ..      17     156 .. 0.87
   2 ?   -2.4   0.0       8.2   6.4e+03      25      51 ..     163     189 ..     163     225 .. 0.70

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 2.9e-28
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdeeiekals 90 
                 lknvs+ l+eg+++a++G+nG+GK+t+lk+l+ l++p+ G+i+l gkd ++   +++r+ ig++pq   + ++ +  e          +  ++ e++++
  CCG91307.1  17 LKNVSFRLQEGTITALIGPNGSGKTTILKILCSLVRPDRGSIRLGGKDPRR--DPEVRRLIGYMPQVYDFPEHRSPSELirwlkeiraQPASREEDLVR 113
                 79***********************************************99..899***********44444444555599989766655556777777 PP

                 HSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  91 klglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  ++l    ++ +     +LS G + +va   al+  +++lllDEpta
  CCG91307.1 114 LFELAPEMKRSL----GTLSWGTRAKVACTLALMFSSPILLLDEPTA 156
                 777777677777....*****************************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 8.2
                 HHHHHHHTTSS--SEEEEEETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  25 StLlkllagllkpteGeilldgkdlke 51 
                 St lk l+++++ +  +ill ++++ +
  CCG91307.1 163 STRLKDLLRMEREEGKTILLSSHSMAD 189
                 566666667766666666666666554 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.6e-09   1.2e-06       1      40 [.      29      62 ..      29      95 .. 0.70
   2 !   26.0   0.0   9.1e-09   7.1e-06     234     299 ..     125     187 ..     121     191 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.6e-09
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggg 40
                +++liGpNgsGK+++L++l  l      v+++  + + gg
  CCG91307.1 29 ITALIGPNGSGKTTILKILCSL------VRPDRGSIRLGG 62
                79*****************444......333333333333 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 9.1e-09
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299
                 +  lS Gt+   a  +al       ++ll+DEp +g++P + +rl +ll+ ++++g  ++l++HS 
  CCG91307.1 125 LGTLSWGTRAKVACTLALMFSS---PILLLDEPTAGMDPIASTRLKDLLRMEREEGKTILLSSHSM 187
                 5567888888877777777766...9***************************************6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.9e-06    0.0077      24      42 ..      27      45 ..       5      54 .. 0.78
   2 !    8.9   0.0    0.0012      0.93     136     198 ..     127     185 ..      92     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.9e-06
                SSEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlld 42
                  +ta++GpNGSGK+ +l 
  CCG91307.1 27 GTITALIGPNGSGKTTILK 45
                3589***********9986 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0012
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislr 198
                 +LS G ++ va+ L +    +  +p+ llDe  a +D    +++ +ll+ ++++   i  s +
  CCG91307.1 127 TLSWGTRAKVACTLAL----MFSSPILLLDEPTAGMDPIASTRLKDLLRMEREEGKTILLSSH 185
                 6888888877777664....3468*************************98888777665533 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.9e-08   1.5e-05      14      46 ..      17      50 ..      15      73 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.9e-08
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsilealdlF 46
                lk+v+  l+e  +t liG+N+sGK++il++l  +
  CCG91307.1 17 LKNVSFRLQEGtITALIGPNGSGKTTILKILCSL 50
                788999999999******************9665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   5.1e-08     4e-05      11      40 ..      18      48 ..       8      51 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 5.1e-08
      AAA_23 11 rdqeidF.skgltlItGpNGaGKTTildAik 40
                +++++ + +  +t+++GpNG+GKTTil  ++
  CCG91307.1 18 KNVSFRLqEGTITALIGPNGSGKTTILKILC 48
                55556666668****************9887 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.6e-07    0.0002      15      46 ..      20      51 ..      15      59 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.6e-07
      AAA_29 15 htieidlkg.atlltGpsGsGKSTllDAiqalL 46
                 ++++++ g +t l+Gp+GsGK+T+l  +  l 
  CCG91307.1 20 VSFRLQE-GtITALIGPNGSGKTTILKILCSLV 51
                4566664.46***************96655555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.1e-06   0.00086       4      80 ..      26     116 ..      23     184 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.1e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee..........erpevv.....fvtlpsstsskdllrellralglelkaerlsseelle 80 
                 + +i++++G+ G+GKTt l+ l +    +    +          e ++++      ++ p+  s+++l r+l ++  +++++ + ++ +l+e
  CCG91307.1  26 EGTITALIGPNGSGKTTILKILCSLVRPDRGSIRlggkdprrdpEVRRLIgympqVYDFPEHRSPSELIRWLKEIRAQPASR-EEDLVRLFE 116
                 6789******************99985544444499****97765555558899999999999*********9999988888.555555544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.8e-06    0.0061      23     107 ..      26     117 ..      11     234 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.8e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala...........a 107
                 ++ ++ l+G+ G+GK+++++ l   ++ d+g   l gk  +       ++ + +++     + +  ++ + +el +w ++++++ a            
  CCG91307.1  26 EGTITALIGPNGSGKTTILKILCSLVRPDRGSIrLGGKDPRR------DPeVRRLIGYMPQVYDFPEHRSPSELIRWLKEIRAQPAsreedlvrlfeL 117
                 44899**************99996666665433366666665......44455555444556666666666777777777766655444444444440 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.5e-05     0.066      17      44 ..      26      53 ..      19      75 .. 0.83
   2 ?   -2.8   0.0       5.6   4.4e+03      44      50 ..     175     181 ..     157     197 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.5e-05
      AAA_30 17 gdrvavltGpAGtGKttalkalreawea 44
                +  +++l Gp G+GKtt+lk l  +++ 
  CCG91307.1 26 EGTITALIGPNGSGKTTILKILCSLVRP 53
                445999**************99777665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.6
      AAA_30  44 aaggrvi 50 
                 ++g++++
  CCG91307.1 175 EEGKTIL 181
                 2222222 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00019      0.15       8      76 ..      18     199 ..      14     238 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
      AAA_11   8 eaiksalseseitliqGPPGtgKTktivellsqll................................................................ 42 
                 +++++ l+e  it + GP G+gKT+ + ++l +l+                                                                
  CCG91307.1  18 KNVSFRLQEGTITALIGPNGSGKTTIL-KILCSLVrpdrgsirlggkdprrdpevrrligympqvydfpehrspselirwlkeiraqpasreedlvrlf 115
                 56677889999************9655.55555544888888888888888888888888888888888888887777777777777777777777777 PP

      AAA_11  43 .........................................sr.......rk..seeeksakpriLvCapSNaAvDellerllr 76 
                                                           +        k   ++e+++++ iL++++S a v e+ +rll 
  CCG91307.1 116 elapemkrslgtlswgtrakvactlalmfsspillldeptaGMdpiastrLKdlLRMEREEGKTILLSSHSMADVAEVGDRLLL 199
                 777777776666666666666666665555555555544440044444341135667788888888888888888888888776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.4e-05     0.058      88     121 ..      15      49 ..       2      63 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.4e-05
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallp 121
                   +l++++ +l++  +++l+G+ G GK+t+++ l +
   CCG91307.1  15 IALKNVSFRLQEgTITALIGPNGSGKTTILKILCS 49 
                  567888999998899***************99987 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0002      0.16      30      50 ..      24      44 ..      15      75 .. 0.87
   2 ?   -1.5   0.0         2   1.6e+03      45     189 ..     177     186 ..     165     235 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
      AAA_25 30 lpagelallaGapgtGKttla 50
                l +g++++l+G+ g+GKtt++
  CCG91307.1 24 LQEGTITALIGPNGSGKTTIL 44
                789****************97 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2
      AAA_25  45 GKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfakdrggtlltadvdaleaaieevegv 143
                 GKt l+++                                                                                           
  CCG91307.1 177 GKTILLSS------------------------------------------------------------------------------------------- 184
                 44444333........................................................................................... PP

      AAA_25 144 rlvviDplsralggdensnsdvgalvealeriarrtgaavllvhHv 189
                                                             H+
  CCG91307.1 185 --------------------------------------------HS 186
                 ............................................22 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0    0.0002      0.16       3      21 ..      32      50 ..      30      76 .. 0.89
   2 ?   -2.0   0.0         6   4.7e+03      60      74 ..     147     165 ..     133     191 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0002
                EESSTTSSHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavake 21
                l+Gp G GKT++ k +++ 
  CCG91307.1 32 LIGPNGSGKTTILKILCSL 50
                89*************9975 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 6
                 EEEEEET....GGGHHHHH CS
         AAA  60 silfiDE....idalaksr 74 
                  il++DE    +d +a++r
  CCG91307.1 147 PILLLDEptagMDPIASTR 165
                 5777777444445555554 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0026         2       3      23 ..      28      48 ..      26      76 .. 0.85
   2 ?    1.4   0.0      0.39     3e+02      67     109 ..     148     193 ..     132     199 .. 0.72
   3 ?   -1.1   0.0       2.4   1.8e+03      72      92 ..     216     236 ..     212     239 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0026
      AAA_14  3 kilvitGaRrvGKTtllkqli 23
                 i ++ G+  +GKTt+lk l 
  CCG91307.1 28 TITALIGPNGSGKTTILKILC 48
                6889************98765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.39
      AAA_14  67 ylflDEiq..evpewekalkslvdeg.knldvivtGSnskllskei 109
                 +l+lDE    + p +++ lk+l++ + ++++ i+  S+s+    e+
  CCG91307.1 148 ILLLDEPTagMDPIASTRLKDLLRMErEEGKTILLSSHSMADVAEV 193
                 6777775411457788889998885547899999999988766655 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.4
      AAA_14  72 Eiqevpewekalkslvdegkn 92 
                 E  +vp++e+a+ ++++++++
  CCG91307.1 216 ETEKVPTLERAIAQILENRRH 236
                 778999*******99998865 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00036      0.28       3      24 ..      30      51 ..      28      57 .. 0.85
   2 ?   -1.6   0.0       2.9   2.2e+03     109     128 ..     166     185 ..     150     199 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
                EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklalaw 24
                 +l G++GsGKTt l+ l+++ 
  CCG91307.1 30 TALIGPNGSGKTTILKILCSLV 51
                5799***********9998875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.9
                 HHHHHCTTTTT--EEEEEEE CS
       NACHT 109 Lselirkkllpeasllltvr 128
                 L++l+r +   + ++ll+++
  CCG91307.1 166 LKDLLRMEREEGKTILLSSH 185
                 55555555555555555544 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00044      0.34       4      24 ..      32      53 ..      30      69 .. 0.84
   2 ?   -1.3   0.0       2.5     2e+03      69      73 ..     149     153 ..      93     226 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00044
                EE--SSSSHHHHHHHGGGGB.S CS
       AAA_5  4 LvGppGtgKselaerlaaal.n 24
                L+Gp G+gK+++ + l++++  
  CCG91307.1 32 LIGPNGSGKTTILKILCSLVrP 53
                9***************999853 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.5
                 EEEES CS
       AAA_5  69 lvlDE 73 
                 l+lDE
  CCG91307.1 149 LLLDE 153
                 44444 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00019      0.15       3      39 ..      29      65 ..      27      96 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEEST CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDt 39
                +++l+G++G+GKTt l  L  l++ +  ++ l   D 
  CCG91307.1 29 ITALIGPNGSGKTTILKILCSLVRPDRGSIRLGGKDP 65
                6789***********9999888887777777766665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0003      0.24       3      26 ..      31      49 ..      29     116 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0003
      AAA_33  3 llvGlpGsGKstlaerllkklgav 26
                 l+G++GsGK+t ++ l+      
  CCG91307.1 31 ALIGPNGSGKTTILKILC-----S 49
                589**********99887.....3 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00071      0.55       9      47 ..       9      48 ..       7      51 .. 0.81
   2 ?   -1.0   0.0       1.4   1.1e+03     136     165 ..     168     197 ..     166     225 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00071
      AAA_27  9 eryGk.ftdrsldfsaeeadlhliyGpNEAGKstalrAis 47
                +r+G+ ++ ++++f+ +e  ++ ++GpN +GK+t+l+ + 
  CCG91307.1  9 KRFGRrIALKNVSFRLQEGTITALIGPNGSGKTTILKILC 48
                6777436667899999999****************98665 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
      AAA_27 136 alleaegelgqlLfeasaGlaslrevleaL 165
                 +ll+ e e g++++ +s ++a+++ev ++L
  CCG91307.1 168 DLLRMEREEGKTILLSSHSMADVAEVGDRL 197
                 688899999999999999999999988776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00082      0.64       3      19 ..      32      48 ..      31     115 .. 0.89
   2 ?   -0.5   0.0       2.2   1.7e+03      65      83 ..     167     186 ..     151     217 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00082
      AAA_18  3 ltGtpGvGKttlakeLs 19
                l G+ G+GKtt+ k L 
  CCG91307.1 32 LIGPNGSGKTTILKILC 48
                89************994 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.2
      AAA_18  65 eenss.aleegknlvidghl 83 
                 +   +  +eegk++++++h 
  CCG91307.1 167 KDLLRmEREEGKTILLSSHS 186
                 33333457899999998885 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00048      0.38      10      34 ..      27      51 ..      18      58 .. 0.82
   2 ?   -2.7   0.0       8.6   6.7e+03      33      47 ..     168     182 ..     144     203 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00048
      AAA_19 10 ekvllvtaGpGtGKTrvlkhivall 34
                 ++ +++++ G+GKT++lk  ++l+
  CCG91307.1 27 GTITALIGPNGSGKTTILKILCSLV 51
                567789************9988765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 8.6
      AAA_19  33 llvelggvkpeeill 47 
                  l+++++++ ++ill
  CCG91307.1 168 DLLRMEREEGKTILL 182
                 333333333333333 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00051       0.4      13      41 ..      14      49 ..       4      57 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00051
                HHHHCH.......TEEEEEEESTTSSHHHHHHHHHH CS
        TsaE 13 klakal.......gdvilLeGdLGaGKTtlvrglak 41
                ++a +        g++ +L G+ G+GKTt+ + l++
  CCG91307.1 14 RIALKNvsfrlqeGTITALIGPNGSGKTTILKILCS 49
                44432234444447789**************99886 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00046      0.36       2      21 ..      29      48 ..      28      58 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00046
                EEEEEESTTCCHHHHHHHHH CS
        cobW  2 vtvltGflGsGKTtLlnhll 21
                +t l G+ GsGKTt+l+ l+
  CCG91307.1 29 ITALIGPNGSGKTTILKILC 48
                68899***********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 1614.31
//
Query:       CCG91308.1  [L=45]
Description: hypothetical protein MFUM_1020032 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       193  (0.0107647); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 357.95
//
Query:       CCG91309.1  [L=287]
Description: Predicted Co/Zn/Cd cation transporter [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-39  133.3  11.4    1.1e-38  133.0  11.4    1.1  1  Cation_efflux  Cation efflux family
    1.4e-21   76.4   2.2    2.6e-21   75.5   2.2    1.5  1  ZT_dimer       Dimerisation domain of Zinc Transporter
  ------ inclusion threshold ------
        9.8    6.7   5.7         21    5.6   0.3    2.5  2  DUF4231        Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0  11.4   1.9e-42   1.1e-38       3     199 .]      13     204 ..      11     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 1.9e-42
  Cation_efflux   3 lsllanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygrlevlgalvsgllllglavfllleaiqklikege 98 
                    ls+l+n++la+ ++ +gl  +S al ad++ sl+d+ s+ll+++++k+s+ ppd ++pfG+g++ +++a+++++ll++  +f+ +eai++l+    
     CCG91309.1  13 LSILVNFLLAAGKISFGLSGHSFALSADGLESLADIGSSLLVWFGIKISQIPPDPNHPFGHGKADPIAAFIVSILLMLCTLFVSIEAIKNLW--IS 106
                    79******************************************************************************************..99 PP

  Cation_efflux  99 reihaglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvaslligliilysalkllkes 194
                       ++ ++l  +++ ++++ ++++i+++ g+ ++s +l a+++h+++D+l+sl + +++l++  + lk    aD++a+++ ++ii+ ++ +l++ s
     CCG91309.1 107 TPLPSLYTLPAIGIIVIIKEIFYRIFKKLGENTGSLVLCADSWHHRSDVLSSLSAFFGILIAVATGLKQ---ADSIAAIVSAIIIFWNSIHLIRPS 199
                    99**************************************************************96665...************************ PP

  Cation_efflux 195 lseLl 199
                    ++e++
     CCG91309.1 200 FLEMM 204
                    99876 PP

>> ZT_dimer  Dimerisation domain of Zinc Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   2.2   4.4e-25   2.6e-21       3      78 ..     210     285 ..     208     286 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 4.4e-25
                 ..HHHHHHHHHTT-SS-EEEEEEEEE-S----EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHH-TT--EEEEEEEE CS
    ZT_dimer   3 eeeeeeireiiksvpgvkgvhdlrtrksGskifvdlhievdgdlsvkeaHeiadevekrikeefpgvadvliHveP 78 
                 +++e++ir+i+++vpgv++++++r+rksG+ +++d+h+ v+g+l+v+e+H i ++v++++ ++  +++dv++H+eP
  CCG91309.1 210 KNIEQKIRNIAEEVPGVIKIEKCRIRKSGHGLLMDIHVMVSGTLTVREGHIIGHKVKDKLCASPMNITDVVVHIEP 285
                 6789************************************************************************ PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.3    0.0035        21      42      74 ..      73     105 ..       3     107 .. 0.87
   2 ?    3.3   0.8     0.018   1.1e+02      23      65 ..     159     195 ..     145     199 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0035
     DUF4231  42 gvsvlkiltallsalvailaaleeffrykerWr 74 
                  + + +i+++++s+l+ +++ ++++   k+ W+
  CCG91309.1  73 HGKADPIAAFIVSILLMLCTLFVSIEAIKNLWI 105
                 567889***********************9998 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.018
     DUF4231  23 itivlgallpilvssklgagvsvlkiltallsalvailaalee 65 
                 ++    a++ il++   ++g  ++  ++a++sa++++ +++  
  CCG91309.1 159 LS----AFFGILIA--VATGLKQADSIAAIVSAIIIFWNSIHL 195
                 34....44444444..445589999999999999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2135.28
//
Query:       CCG91310.1  [L=113]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 764.20
//
Query:       CCG91311.1  [L=933]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-09   36.8   0.5     0.0026   17.0   0.5    3.2  2  Phosphoesterase  Phosphoesterase family
    2.9e-09   36.7   0.0    0.00048   19.5   0.0    2.9  3  Lactonase        Lactonase, 7-bladed beta-propeller
    0.00022   20.9   0.0     0.0025   17.4   0.0    2.3  2  SGL              SMP-30/Gluconolactonase/LRE-like region
      0.005   17.1   0.0        1.5    9.2   0.0    3.1  3  ANAPC4_WD40      Anaphase-promoting complex subunit 4 WD40 do
  ------ inclusion threshold ------
      0.034   14.3   0.0         40    4.5   0.0    4.1  4  Arylesterase     Arylesterase


Domain annotation for each model (and alignments):
>> Phosphoesterase  Phosphoesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.9e-06    0.0069       1      27 [.     489     516 ..     489     601 .. 0.71
   2 !   17.0   0.5   7.1e-07    0.0026     228     355 ..     714     832 ..     700     833 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.9e-06
  Phosphoesterase   1 ikhvViivqENrsfdhlfGtlkgvrg.i 27 
                      ++hv  i++ENrs+d+lfG+lk+ +g  
       CCG91311.1 489 VHHVLYIIKENRSYDQLFGDLKAGNGdP 516
                      689*******************766633 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 7.1e-07
  Phosphoesterase 228 kfkkdvkngkLPqvsfikpng..........andeHpgadvaagdklikevlealtsspqwaktllivtyDE.ngGfyDhVappvapvsdpdgl 310
                      +f + vkn +LP++  i  +           ++ +  + ++a+ d ++  ++e++++sp+  +tl++v  D+ ++G+ DhV +           
       CCG91311.1 714 EFDDFVKNHNLPTLELIRLPHdhfglfgqgiDKIDTVETQMADNDYALGLIVEKIAHSPYKDDTLIFVIEDDaQNGI-DHVDAH---------- 796
                      56666777777777777777777777777653333334588889999999999*******88888777666615666.999987.......... PP

  Phosphoesterase 311 kGdpyglgvrvPllviSpyakkgtvdhelfdhtSvlrfiekrfgl 355
                               r  +l+i+py+k+g   ++ + + ++l++iek+ gl
       CCG91311.1 797 ---------RSIALIIGPYVKQGITISTRYTTINLLKTIEKILGL 832
                      .........7889****************************9887 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.3e-07   0.00048     197     274 ..     132     211 ..     130     229 .. 0.83
   2 !   13.0   0.0   1.3e-05     0.046       2     117 ..     250     363 ..     249     381 .. 0.85
   3 ?    0.3   0.0     0.095   3.4e+02     245     262 ..     389     406 ..     360     410 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.3e-07
                 EE-TTSSEEEEEETTTTEEEEEEEE-TTTEEEEEEEEESS-T..SS-S---EEEEEE-TTSSEEEEEETSSTEEEEEEE- CS
   Lactonase 197 aFhpdgkiaYvvnELsstvsvfsydeatgaleelqtvstlpe..gftgknsaaeIrlspdgkflyvSnRgadsiavfavd 274
                  ++pdg+ +Yv + ++  + +f+  e+ ++l++      +++  g++ k   + +r+spdgkfl+v+n ++dsi++ +++
  CCG91311.1 132 DWNPDGREFYVSGGMDDVIYAFKGFEQRWSLSRPPLSLNHSKgnGIETKPVVSGLRVSPDGKFLVVANFTNDSISMIDLE 211
                 6899******************8877999996554444444435799999************************998774 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.3e-05
                 EEEEEGGSSS.TEEEEEEEETTTS-EEEEEEEEESS---SEEE-TTSSEEEEEET.STTTEEEEEEEETTTTEEEEEEEEE....SSS-EEEEEE-TTS CS
   Lactonase   2 lyvGtytkgeskgiytlkldtetgkltplelvaelenPsyLalspdgktlYavnetgeeggvsafaidkdsgeltllnkvss...egaspchlsvdedg 97 
                 +yv++ ++   ++i  ++++++t k+++       ++P+ + ++++ ++ Y  +++ ++ +++  +idk  +++  +++ s    +ga+p  ls+d++g
  CCG91311.1 250 IYVSSLRD---REIDIISFENNTMKFSKRL--YLQGQPNRIIVNSTFNRAYITEDNADRLTIVDTSIDKVIESIPTMGQPSGkllQGAAPNNLSLDPSG 343
                 67777776...8999999977777777665..45899****************9999***********999999999998878889************* PP

                 SEEEEEETTTTEEEEEEB.T CS
   Lactonase  98 kllavAnYsggsvsvfplda 117
                 k+l+v n + +++s ++l+ 
  CCG91311.1 344 KFLYVTNGGMNCLSLIKLSP 363
                 *******9999999988874 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.095
                 -EEEEEE-TTSSEEEEEE CS
   Lactonase 245 saaeIrlspdgkflyvSn 262
                  ++++ l +dgk++yv+n
  CCG91311.1 389 YPSAVGLRSDGKWIYVCN 406
                 678999999999999988 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   7.1e-07    0.0025     126     213 ..     115     211 ..      88     225 .. 0.81
   2 ?    0.5   0.0       0.1   3.6e+02      83     155 ..     329     353 ..     244     405 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 7.1e-07
         SGL 126 lervlddltipN...GlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkge.....gepDGlavDaeGn.vwvAvwgggkvvrfdpd 213
                   + +  ++ipN   G+ w+pdg+ +Y+   + + i+a++  ++   ls+  + ++ +kg+      ++ Gl v  +G+ + vA + ++ ++ +d +
  CCG91311.1 115 YPQKMAMVSIPNsfmGIDWNPDGREFYVSGGMDDVIYAFKGFEQRWSLSRPPLSLNHSKGNgietkPVVSGLRVSPDGKfLVVANFTNDSISMIDLE 211
                 55666678888877799************************99999999999999999999888775589999999887367888899999888877 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.1
         SGL  83 kpllrfNDgvvdpdGr.lwfGtmgdeeakgeevgalyrldpdgklervlddltipNGlawspdgktlYlaDslt 155
                  + + +N +  dp G+ l+++  g                                                  
  CCG91311.1 329 LQGAAPNNLSLDPSGKfLYVTNGG-------------------------------------------------M 353
                 455566666666666644555443.................................................3 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.3   8.3e+03      43      55 ..     130     142 ..     126     148 .. 0.81
   2 !    9.2   0.0   0.00041       1.5      38      78 ..     180     221 ..     169     227 .. 0.81
   3 ?    4.0   0.0     0.017        61      43      72 ..     241     270 ..     234     281 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.3
  ANAPC4_WD40  43 sLaWkpdgklLav 55 
                  ++ W+pdg+ + v
   CCG91311.1 130 GIDWNPDGREFYV 142
                  689*****97766 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00041
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavay.sdgevrlldaesgkvvhslsv 78 
                  +  v++L+ +pdgk+L+va   + +++++d e+ k + +l+ 
   CCG91311.1 180 KPVVSGLRVSPDGKFLVVANfTNDSISMIDLENWKKIGELDL 221
                  556899************9625569*******9998877765 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.017
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrlldaesgkv 72 
                  +LaW  ++k+ + +  d e+ +++ e+ ++
   CCG91311.1 241 DLAWIGNNKIYVSSLRDREIDIISFENNTM 270
                  69************************9887 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.035   1.2e+02      53      82 ..     122     154 ..     100     158 .. 0.79
   2 ?    4.5   0.0     0.011        40      57      80 ..     184     207 ..     175     212 .. 0.88
   3 ?    0.9   0.0      0.15   5.2e+02      55      72 ..     333     350 ..     329     355 .. 0.90
   4 ?   -2.7   0.0         2   7.3e+03      58      72 ..     392     406 ..     389     408 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.035
  Arylesterase  53 lssan...GInidadkkyiyvadilresihvmk 82 
                   +s +n   GI  ++d +  yv+  +++ i+++k
    CCG91311.1 122 VSIPNsfmGIDWNPDGREFYVSGGMDDVIYAFK 154
                   444444449*********************988 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.011
  Arylesterase  57 nGInidadkkyiyvadilresihv 80 
                    G+ +++d k++ va+ +++si +
    CCG91311.1 184 SGLRVSPDGKFLVVANFTNDSISM 207
                   6999****************9976 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.15
  Arylesterase  55 sanGInidadkkyiyvad 72 
                   ++n + +d+  k++yv++
    CCG91311.1 333 APNNLSLDPSGKFLYVTN 350
                   789999**********96 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 2
  Arylesterase  58 GInidadkkyiyvad 72 
                    +++ +d k iyv +
    CCG91311.1 392 AVGLRSDGKWIYVCN 406
                   5678899*****976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.47
# Mc/sec: 5953.60
//
Query:       CCG91312.1  [L=396]
Description: putative Abortive infection protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-29  101.3   0.9    1.1e-28  101.0   0.9    1.1  1  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    1.4e-07   32.2   0.0    2.3e-07   31.5   0.0    1.6  1  AAA_23    AAA domain
    1.7e-06   28.0   0.0      0.044   13.5   0.0    2.2  2  AAA_15    AAA ATPase domain
      0.007   15.8   0.0      0.047   13.1   0.0    2.2  3  SMC_N     RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
        0.2   12.2   0.0       0.37   11.3   0.0    1.5  1  ABC_tran  ABC transporter


Domain annotation for each model (and alignments):
>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.9     3e-32   1.1e-28       2     302 ..      46     343 ..      45     344 .. 0.94

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 3e-32
      AAA_21   2 nvliGpNgsGKSnLLdaldllarl...drdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv.......eeklssv 90 
                  ++ GpN+sGK+ +L+a+++la++      + + ++ ++  +++  +++++++ + ei  +  ++  + +  +yry++++  +         +e+ls +
  CCG91312.1  46 VAVFGPNASGKTVFLRAISFLAWFatdSFQLPPYQPLPDFQFKNEHWAKKPTRLAVEIGQRSLFPGREGEAGVYRYEVEIQGQKEslpssvtKESLSYK 144
                 6899***********************9999******************************************************************** PP

      AAA_21  91 etllesgllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlv 189
                 +++ +++ll+++r ++ + +  + +         + +++ sv++  ++   + ++++ + +  ++ +l +    ++  l++ +  + f   ++ll++  
  CCG91312.1 145 PSTARKPLLVFERGDDGRIQGTDLFPILSLPSVFKIRPNTSVISTYAQLGHQIAIEFQKVLQGIRYNLFW----YKEALSLERLILLFRQDPELLKQAN 239
                 ********************************************************************99....9999999999999999999999999 PP

      AAA_21 190 rslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell....ke 284
                 r+l++ ++ l  l++  +             ++f + g    +p+  +S Gt+++l+ ++ l+  lk g++ +iDE+++++HP +lr+++ ++    k+
  CCG91312.1 240 RELRRLDLGLLELKISQNG-----------ELIFTHQGLKESIPWVLESNGTQSFLRSFPHLWMVLKTGGIAVIDELDASIHPDVLREIISWFwdpeKN 327
                 9999999999888654433...........89*************************************************************966444 PP

      AAA_21 285 lsrngaQviltTHSplll 302
                     gaQ++++ H  +ll
  CCG91312.1 328 P--SGAQLFFSCHTIHLL 343
                 4..46********88887 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   6.3e-11   2.3e-07       1      78 [.       4     102 ..       4     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 6.3e-11
      AAA_23   1 kLkienfrsf.rdqeidF....................skgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayvelt 78 
                 +L+ienf s+ ++qeidF                     +++++++GpN +GKT +l+Ai +  +  t  +    ++ + +  ++ e+++k+++ + ++
  CCG91312.1   4 RLEIENFYSIaDRQEIDFclrvpddprfapiypnakkrAPKVVAVFGPNASGKTVFLRAISFLAWFATDSFQLPPYQPLPDFQFKNEHWAKKPTRLAVE 102
                 79********77799********999999999999888889********************99988776666666666666666666665555553333 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.2e-05     0.044       5      48 ..       4      68 ..       1     145 [. 0.83
   2 !   12.9   0.1   1.9e-05     0.067     289     368 ..     268     342 ..     195     343 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
      AAA_15  5 kikikNFRslkd.veidlsee....................ltvliGkNnsGKSsilealdlFln 48
                +++i+NF s+ d  eid+                       +  + G+N+sGK+ +l+a+ ++  
  CCG91312.1  4 RLEIENFYSIADrQEIDFCLRvpddprfapiypnakkrapkVVAVFGPNASGKTVFLRAISFLAW 68
                6788888888888888887777778888888888888999899999**************98865 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.9e-05
      AAA_15 289 deelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnkt.QviitTHSphi 368
                 +e++p    + G+q++l  + ++++  k         i +i+E +a++Hp+  +++i  + +  ++ ++ Q++++ H+ h+
  CCG91312.1 268 KESIPWVLESNGTQSFLRSFPHLWMVLKT------GGIAVIDELDASIHPDVLREIISWFWDPEKNPSGaQLFFSCHTIHL 342
                 55666666666777766666666666666......7899***************************999********9886 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.29   1.1e+03       2      20 ..       2      19 ..       1      24 [. 0.76
   2 !   13.1   0.0   1.3e-05     0.047      23      47 ..      42      66 ..      36      75 .. 0.89
   3 ?   -2.6   0.0      0.83     3e+03     161     204 ..     299     345 ..     295     352 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.29
                EEEEEEESETTEECEEEEE CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N  2 lkrleienFksyagktvil 20
                l rleienF s+a+++ ++
  CCG91312.1  2 LFRLEIENFYSIADRQ-EI 19
                679*********9555.44 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.3e-05
                TSSEEEEEESTTSSHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 23 sksftaivGpNGSGKsnlldAilFv 47
                ++++ a+ GpN SGK+ +l Ai+F+
  CCG91312.1 42 APKVVAVFGPNASGKTVFLRAISFL 66
                67899******************96 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.83
                 EEEECTTTTTS-HHHHHHHHHHHHHHCTT...SEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx RF
       SMC_N 161 lyllDeidaaLDeknvkkvaellkekskn...aQfivislreemlek 204
                 + ++De+da +     +++ + +   +kn   aQ++  +++ ++le+
  CCG91312.1 299 IAVIDELDASIHPDVLREIISWFWDPEKNpsgAQLFFSCHTIHLLEE 345
                 56899999998888777777777644444445788877777776665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0001      0.37      12      36 ..      44      68 ..      37     140 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
                SEEEEEESTTSSHHHHHHHHTTSS- CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlkllagllk 36
                ++va++G+n +GK+ +l++++ l  
  CCG91312.1 44 KVVAVFGPNASGKTVFLRAISFLAW 68
                799*****************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2479.20
//
Query:       CCG91313.1  [L=206]
Description: hypothetical protein MFUM_1020037 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-10   41.5   0.2    2.1e-10   41.2   0.2    1.1  1  RloB      RloB-like protein


Domain annotation for each model (and alignments):
>> RloB  RloB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.2   1.2e-14   2.1e-10       1     169 [.      31     191 ..      31     199 .. 0.64

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.2e-14
        RloB   1 ilivcEGekTEpiYFkalkelrrerkina.......gsntrsesekkksnpkklvekaielkkekyeeeydkvwcVfDrDkskdfeae.aqkedvkeai 91 
                 i+++cEGe +E++Y   l+el +e++  +       ++n       k+  p k+v +ai++  +k + + ++ ++++D+D     +++ ++ ++ ke+ 
  CCG91313.1  31 IFVACEGE-SEQAYVALLNELAQEKD--PplpvflrSYN------VKGGGPCKMVAEAIKK-ASKGDYTWKEKVILMDKD---VCKNNpDECQKAKEK- 115
                 79******.*********98888833..35676655433......37899***********.67889999999*******...444332334444444. PP

        RloB  92 keakkk.iklavSnpcFElWlllHfedv......qa.lsrkellkklkeykyekgkekklenkkkkskeiyesllk....kiekAienak 169
                   ak++ + + +  p  E +ll H +d       +a + ++ l++kl+  +y+k               +ye   +    +ie+A ++ k
  CCG91313.1 116 --AKENgFLILWQEPNHEGFLLQHLCDEkgnlslTAeNAQDMLKRKLDLREYKKP------------LTRYELRSRigakEIERAAKKIK 191
                 ..4444666*******************775444332333333333322244433............33333222222223555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1427.85
//
Query:       CCG91314.1  [L=147]
Description: Ribose 5-phosphate isomerase B [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-51  173.4   0.0    2.7e-51  173.2   0.0    1.0  1  LacAB_rpiB      Ribose/Galactose Isomerase
     0.0059   16.6   0.1     0.0092   16.0   0.1    1.3  1  Gly_rich_SFCGS  Glycine-rich SFCGS


Domain annotation for each model (and alignments):
>> LacAB_rpiB  Ribose/Galactose Isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.2   0.0     3e-55   2.7e-51       1     139 []       3     141 ..       3     141 .. 0.98

  Alignments for each domain:
  == domain 1  score: 173.2 bits;  conditional E-value: 3e-55
                 EEEEE-GCGHHHHHHHHHHHHHTTTEEEEECESS.SS---HHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHTT- CS
  LacAB_rpiB   1 iaigsDhagfelkekikeyLkekghevidvgtes.eesvdYpdfakkvaeavasgeadlgiliCgtGiGmsiaaNkvkgiraalchdeesAklarehnn 98 
                 ia+gsDhagf++kek+k++L+e+  evid+gt + +  vdYpd+ + +a +va+g+ad++i++ g+G+G +++aNkvkgir+a+c +eesA+l r hn+
  CCG91314.1   3 IALGSDHAGFHYKEKVKKFLEESCLEVIDCGTFAaDPPVDYPDYIRPAALLVAQGKADRAIVFGGSGNGEAMVANKVKGIRCAYCFNEESARLGRLHND 101
                 89******************99999*******99888************************************************************** PP

                 -SEEEEETTTS-HHHHHHHHHHHHHS---.HTHHHHHHHHH CS
  LacAB_rpiB  99 anvlalGarvigeelakeivkaFletefeeggrharrvdki 139
                 an++++G+r+i+ee+a +ivk+Flet+fe ggrh  r++k+
  CCG91314.1 102 ANAISMGERLISEEMALKIVKIFLETPFE-GGRHIPRIKKM 141
                 ****************************7.********985 PP

>> Gly_rich_SFCGS  Glycine-rich SFCGS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     1e-06    0.0092      42     112 ..      54     125 ..      47     127 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1e-06
  Gly_rich_SFCGS  42 mkkeeadlgisfcgsggagaltaqtkygykakyglrsveegvtaikegkkvlgfg.fldkeelgkrlveayv 112
                     + + +ad  i f gsg   a++a++  g ++ y +    + +  +++ ++ + +g  l +ee+  ++v+ + 
      CCG91314.1  54 VAQGKADRAIVFGGSGNGEAMVANKVKGIRCAYCFNEESARLGRLHNDANAISMGeRLISEEMALKIVKIFL 125
                     56789********************************************99999944889999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1029.32
//
Query:       CCG91315.1  [L=471]
Description: 6-phosphogluconate dehydrogenase,decarboxylating [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.7e-110  367.9   0.0   4.6e-110  367.5   0.0    1.1  1  6PGD            6-phosphogluconate dehydrogenase, C-terminal 
      1e-45  155.7   0.0    1.5e-45  155.2   0.0    1.2  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    0.00019   21.9   0.1    0.00058   20.4   0.0    1.9  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    0.00093   19.1   0.0     0.0017   18.2   0.0    1.5  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.061   12.9   0.0    2.0  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
      0.015   14.9   0.0       0.03   14.0   0.0    1.5  1  ApbA            Ketopantoate reductase PanE/ApbA
      0.017   14.5   0.0       0.18   11.1   0.0    2.3  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.029   13.7   0.0      0.046   13.0   0.0    1.2  1  Rsm22           Mitochondrial small ribosomal subunit Rsm22
      0.043   13.4   0.0       0.13   11.8   0.0    1.8  2  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
       0.15   11.7   0.0       0.28   10.7   0.0    1.4  1  INTS5_N         Integrator complex subunit 5 N-terminus


Domain annotation for each model (and alignments):
>> 6PGD  6-phosphogluconate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.5   0.0  2.6e-113  4.6e-110       1     289 []     177     470 ..     177     470 .. 0.96

  Alignments for each domain:
  == domain 1  score: 367.5 bits;  conditional E-value: 2.6e-113
        6PGD   1 GhyVKmvHNGieygdmqliaEaydllkkvlglsneeiaevFeeWnkgelesyLieitakilrkkdeedgkplvdkilDkagqkGTgkwtvqealelgvp 99 
                 GhyVKmvHNGieyg+m+li+E+yd+ ++vl+l++++i+++Fe+W+k+el syL+eit +ilrk+d+++++ l++k+lD+a+q GTg wt++ea++l+vp
  CCG91315.1 177 GHYVKMVHNGIEYGIMELIGECYDFAHRVLKLDEKKISDLFEQWSKEELASYLMEITVHILRKRDDKSNDLLLNKVLDVARQLGTGAWTSEEAFSLQVP 275
                 9*****************************************************************9999***************************** PP

        6PGD 100 vptiaeavfaRllSslkeervkaskllkeeee...keeedkeefiedlrkAlyaskivsYaqglellkaaskeygwnlnlaeiariWrgGCiIrakfld 195
                 +p+i++av++R+lSs+ eer++ ++++k+      +ee+ ++ f e+l+kAl++s i++Yaqg++ll++ask+y+++++l+++a++WrgGCiIr++fl+
  CCG91315.1 276 APIIDAAVTMRNLSSRVEERKAYAQHFKSGLVsdiSEETFSSPFYEELKKALFLSIICTYAQGFSLLSEASKRYDYSIDLEKVAKVWRGGCIIRSQFLE 374
                 ***************************742223445555578999****************************************************** PP

        6PGD 196 kikeafeknpelenllldpefakelkea..lealrrvvalaveagipvpalsaalaYldslrserlpanliqaqrDyFGahtyervdkegkfhteW 289
                 ki+ af++np+l+nllldp++ +e++e+  l +lr+ + +a++ g+p+ a+ +al+Y+d++rse+lpanliq qrDyFG+htyer+d eg+fht W
  CCG91315.1 375 KIRGAFQANPQLSNLLLDPNIFREIEEKnlLGSLRNFCLYAIKVGLPAYAFLSALSYIDAFRSEKLPANLIQLQRDYFGSHTYERIDLEGTFHTIW 470
                 ***********************999875578**************************************************************99 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   0.0   8.3e-49   1.5e-45       2     154 ..       6     163 ..       5     172 .. 0.96

  Alignments for each domain:
  == domain 1  score: 155.2 bits;  conditional E-value: 8.3e-49
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT...EEE-SSHHHHHHHC...SEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE-S- CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg...akaaesieelvasl...dvvitmvkagkavdeviegllealkkgdilidgst 91 
                    ig+iGlGvMG+n+aln+l++g++v++ + + +kv +l +e    a+ ++s+e++++sl   ++++++v+ag+ vd+vie+ll+ l++gdilidg++
     CCG91315.1   6 IGIIGLGVMGRNLALNILDHGFTVSGLDKDLSKVVALKEESkemASSFDSVENFIHSLekpKKILFFVPAGHVVDQVIEELLPFLESGDILIDGGN 101
                    8*************************************9988889999************************************************ PP

                    --HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEEEE CS
  NAD_binding_2  92 sspedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigakvt 154
                    s ++dt++++kelk++++ f++++ SGGe gA++G+ s+m+GG++ea+e+++++leai+akv 
     CCG91315.1 102 SFFRDTERRQKELKNRNIFFIGMGTSGGESGARHGP-SLMIGGDKEAYEHLRSLLEAISAKVE 163
                    ************************************.**********************9553 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.2e-07   0.00058       2      93 ..       6      98 ..       5     102 .. 0.79
   2 ?   -2.4   0.0       4.2   7.5e+03       3      22 ..     120     136 ..     118     167 .. 0.47

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.2e-07
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHH....HHHH-SEEEE-S-HHH.HHHHHHHCGHHHHTTSEEEE CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdnee....aaeeadvvvlavkped.veevlselakdalkgklvis 93
                   igiiG G mg+ la+++l +g     +  + +++ +k+ +l+ee +  +++ d  e     +e+ + +++ v+  + v++v++el + + +g ++i+
     CCG91315.1  6 IGIIGLGVMGRNLALNILDHG---FTVS-GLDKDLSKVVALKEESKEMASSFDSVEnfihSLEKPKKILFFVPAGHvVDQVIEELLPFLESGDILID 98
                   9********************...9999.99**********99998555555544411115667888888888755167899999999999999998 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.2
                    EEETTSHHHHHHHHHHHHTT CS
  F420_oxidored   3 giiGaGnmgealasgllaag 22 
                     +iG+G  g       +++g
     CCG91315.1 120 FFIGMGTSGGE---SGARHG 136
                    57777766543...223444 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.7e-07    0.0017       2      48 ..       6      52 ..       5      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.7e-07
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHC CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekiekslek 48
                +++iG G+mG+ +a  ++ +g++V  +d + +++ + +e+ ++  ++
  CCG91315.1  6 IGIIGLGVMGRNLALNILDHGFTVSGLDKDLSKVVALKEESKEMASS 52
                79**************************9877776666666654433 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.4e-05     0.061       3      43 ..       6      46 ..       4      52 .. 0.93
   2 ?   -1.2   0.0      0.71   1.3e+03      64      86 ..     104     126 ..      77     135 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.4e-05
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDideekvdklnsgk 43
                    i +iGlG +G   a+ +  +g++v g+D+d +kv +l++++
      CCG91315.1  6 IGIIGLGVMGRNLALNILDHGFTVSGLDKDLSKVVALKEES 46
                    89**********************************99876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.71
                     EEEES-HHHHHHC-SEEEE---- CS
  UDPG_MGDP_dh_N  64 lsfttdvekaveeadvifiaVgT 86 
                     ++ t + +k++++ +++fi  gT
      CCG91315.1 104 FRDTERRQKELKNRNIFFIGMGT 126
                     44466677888999999999988 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.7e-05      0.03       1     119 [.       6     118 ..       6     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHH.HHHHHGGGECTCEE CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqtee.aleeikplldpntv 97 
                 i i+G+G +G+ la ++  +g +v  ++++  ++ alk++  ++ s+        + + ++   ++le+   ++++v+a ++++ ++ee+ p+l++  +
  CCG91315.1   6 IGIIGLGVMGRNLALNILDHGFTVSGLDKDLsKVVALKEESKEMASSF-------DSVENFI--HSLEKPKKILFFVPAGHVVDqVIEELLPFLESGDI 95 
                 79*****************************88988888888888777.......3344444..56899999*********99857778****999877 PP

                 EEEESSS.SCHHHHHTTTSTTSE CS
        ApbA  98 vlllqNG.lgheeelrealpkpr 119
                  +   N  ++  e+ +++l++++
  CCG91315.1  96 LIDGGNSfFRDTERRQKELKNRN 118
                 66556654444466666665554 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.18      38      83 ..       5      50 ..       1      74 [. 0.76
   2 ?    0.4   0.0       0.2   3.6e+02      25      49 ..     105     129 ..      79     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
                  EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv 83
                   +GiiGlG +G+++a  +   g+ v + d+  +k  + +e+  e++
    CCG91315.1  5 FIGIIGLGVMGRNLALNILDHGFTVSGLDKDLSKVVALKEESKEMA 50
                  58***************************99887663333333222 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.2
                   TTCCGSBS-GTTSEEEEES-SHHHH CS
  2-Hacid_dh_C  25 sekallgkelsgktvGiiGlGrIGq 49 
                   ++++ ++kel+++ +  iG+G  G 
    CCG91315.1 105 RDTERRQKELKNRNIFFIGMGTSGG 129
                   66788999*************9875 PP

>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.6e-05     0.046      21      88 ..     235     302 ..     226     315 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
       Rsm22  21 rvLdelaervpdflPkslldvgegpgtalwaaselweeleevlvidaseelleiskelaadapelkea 88 
                  +L +  ++ +d l +++ldv+   gt+ w  +e ++   ++  ida+  ++++s+ + + +  +++ 
  CCG91315.1 235 HILRKRDDKSNDLLLNKVLDVARQLGTGAWTSEEAFSLQVPAPIIDAAVTMRNLSSRVEERKAYAQHF 302
                 5777778888999999*********************99*****************999888777765 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.4e-05      0.13       7      53 ..       6      51 ..       1     101 [. 0.58
   2 ?   -2.5   0.0       1.9   3.4e+03       2      17 ..     114     129 ..     113     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.4e-05
                EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEE CS
        IlvN  7 iaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevlt 53
                i +iG G  G++ aln+ d g+ v  gl ++ ++v   kee+ e+++
  CCG91315.1  6 IGIIGLGVMGRNLALNILDHGFTVS-GLDKDLSKVVALKEESKEMAS 51
                89********************996.666665444333333333322 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.9
                 HHTS-EEEES-SHHHH CS
        IlvN   2 lkgkkiaviGyGsqGh 17 
                 lk+++i  iG+G+ G 
  CCG91315.1 114 LKNRNIFFIGMGTSGG 129
                 899*********8874 PP

>> INTS5_N  Integrator complex subunit 5 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016      0.28     119     173 ..     202     255 ..     189     263 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
     INTS5_N 119 agrrgvssatnplnellqlwmscevvellldisskclsslisqesdacvdaLLet 173
                 a+r  ++ +++++++l+++w + e  ++l++i+ ++l++  ++++d  ++  L+ 
  CCG91315.1 202 AHR-VLKLDEKKISDLFEQWSKEELASYLMEITVHILRKRDDKSNDLLLNKVLDV 255
                 344.577788889****************************99999888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3433.44
//
Query:       CCG91316.1  [L=57]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       185  (0.0103185); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 497.05
//
Query:       CCG91317.1  [L=52]
Description: hypothetical protein MFUM_1020041 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       132  (0.00736237); expected 358.6 (0.02)
Passed bias filter:                      108  (0.00602376); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 391.24
//
Query:       CCG91318.1  [L=117]
Description: hypothetical protein MFUM_1020042 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 872.46
//
Query:       CCG91319.1  [L=161]
Description: Modulator of heat shock repressor CtsR, McsA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-08   34.3   6.4    2.6e-08   33.3   6.4    1.6  1  UVR              UvrB/uvrC motif
     0.0058   16.4   0.0     0.0084   15.9   0.0    1.3  1  XFP              D-xylulose 5-phosphate/D-fructose 6-phosphat
  ------ inclusion threshold ------
      0.013   16.0   1.1        0.1   13.2   0.2    2.4  2  Trm112p          Trm112p-like protein
       0.17   12.5   3.2        8.5    7.1   0.0    2.3  2  Ribosomal_S20p   Ribosomal protein S20
       0.31   10.7   7.3        1.8    8.2   6.5    2.5  1  TackOD1          Thaumarchaeal output domain 1
       0.72    9.9   6.4        3.5    7.7   0.3    2.4  2  zinc-ribbons_6   zinc-ribbons
       0.88    9.8  10.6        1.1    9.6   1.8    2.7  3  DUF4606          Domain of unknown function (DUF4606)
        1.1    9.3   8.6        4.3    7.5   1.1    3.0  2  Elf1             Transcription elongation factor Elf1 like
        1.2    9.6   5.6       0.78   10.2   2.7    2.2  2  zf-C4pol         C4-type zinc-finger of DNA polymerase delta
        1.7    8.6   6.3        7.1    6.6   0.3    3.1  3  Cys_rich_CPXG    Cysteine-rich CPXCG
        5.8    6.9   8.9         36    4.4   0.1    3.7  4  zinc_ribbon_4    zinc-ribbon domain
        6.6    6.9  11.2        3.7    7.7   0.0    3.5  3  Thioredoxin_4    Thioredoxin


Domain annotation for each model (and alignments):
>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   6.4   1.8e-11   2.6e-08       2      35 ..     124     157 ..     123     158 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.8e-11
         UVR   2 klikeLeeemeeAaenedFEkAAklRDqinalkk 35 
                  +ik+L+e++++A+++e +E+AA +RD+i++l++
  CCG91319.1 124 TKIKRLQEDLKKAVAQEKYEEAATIRDEIAQLEN 157
                 58******************************98 PP

>> XFP  D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.6e-06    0.0084      70     110 ..      71     111 ..      45     122 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.6e-06
         XFP  70 gllegYlltGrhglfasyEaflrivdsmvnqhakflkkake 110
                      + +tGr g  a+yE+f +i++++++   k + ++ +
  CCG91319.1  71 FTETDFKKTGRLGCPACYETFSEIIETILKDMHKGVVHKGK 111
                 44456889********************9998886666555 PP

>> Trm112p  Trm112p-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   6.9e-05       0.1      37      60 ..      21      70 ..       1      72 [. 0.65
   2 ?    0.6   0.1      0.57   8.5e+02      51      63 ..      79      91 ..      73      92 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.9e-05
                ----S..........................CHHTTEECCCCEEEETTTT CS
     Trm112p 37 kpedy..........................ellleldieegeLvCpncg 60
                k +++                          ++  + +i egeL Cp cg
  CCG91319.1 21 KMQKIdlcekcakekgisdsmafsltdmllgDETTKNHIHEGELSCPQCG 70
                4444444445566666777777777777788666789************8 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.57
                CCEEEETTTTEEE CS
     Trm112p 51 egeLvCpncgraY 63
                +g L Cp+c  ++
  CCG91319.1 79 TGRLGCPACYETF 91
                5889999997766 PP

>> Ribosomal_S20p  Ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0057       8.5      47      75 ..      89     117 ..      85     122 .. 0.86
   2 ?    4.1   2.7     0.047        71      27      61 ..     122     154 ..     111     160 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0057
                     HHHHHHHHHHHHHHCTTSSTCCHHHHHHH CS
  Ribosomal_S20p  47 ealkkaiskidkaakkgvihkNtAaRkkS 75 
                     e+++++i +i k + kgv+hk +  +k +
      CCG91319.1  89 ETFSEIIETILKDMHKGVVHKGKTPKKFA 117
                     78999****************98777665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.047
                     HHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHC CS
  Ribosomal_S20p  27 vrtaiKkvraaieadkekaqealkkaiskidkaak 61 
                     + t iK++++ +  +k+ aqe++++a    d +a+
      CCG91319.1 122 YQTKIKRLQEDL--KKAVAQEKYEEAATIRDEIAQ 154
                     568888888888..888899999888887777665 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.5    0.0012       1.8      97     135 ..      57      93 ..       2     103 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0012
     TackOD1  97 dieeqelihhftCgnvgpeeeflkegkleCpkCktkLrh 135
                 +  ++  +++ +Cg +  e++f+k+g+l Cp C ++ ++
  CCG91319.1  57 NHIHEGELSCPQCGFT--ETDFKKTGRLGCPACYETFSE 93 
                 3344455789999986..689************988766 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.1      0.02        30      18      37 ..       2      33 ..       1      39 [. 0.66
   2 ?    7.7   0.3    0.0023       3.5       2      28 ..      65      93 ..      57      97 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.02
                    E-TTT--............EEEEEEE-SSS-S CS
  zinc-ribbons_6 18 hCeaCqe............dlkkealCpeCeq 37
                    +C  C+e            +++k  lC++C +
      CCG91319.1  2 KCAFCNEmatvhltqivgeKMQKIDLCEKCAK 33
                    57777776655555555557777777777765 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0023
                    --SSS-.S--E.E-SSEEE-TTT--EEEE CS
  zinc-ribbons_6  2 kCpeCq.qele.krgeqyhCeaCqedlkk 28
                    +Cp+C  +e++ k++ ++ C aC e +++
      CCG91319.1 65 SCPQCGfTETDfKKTGRLGCPACYETFSE 93
                    69999734555778889999999887765 PP

>> DUF4606  Domain of unknown function (DUF4606)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.4    0.0094        14      15      49 ..       9      43 ..       4      62 .. 0.82
   2 ?   -1.6   0.1       2.2   3.3e+03      24      38 ..      55      70 ..      44      79 .. 0.66
   3 ?    9.6   1.8   0.00071       1.1      44      84 ..     116     160 ..      89     161 .] 0.70

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0094
     DUF4606 15 nlrealkqaseakvHessqCpecqkkkaelaqkaF 49
                + +++l q+   k+ +++ C++c k k+     aF
  CCG91319.1  9 MATVHLTQIVGEKMQKIDLCEKCAKEKGISDSMAF 43
                56778899999**************9986555555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.2
     DUF4606 24 seakvHess.qCpecq 38
                ++ ++He +  Cp+c 
  CCG91319.1 55 TKNHIHEGElSCPQCG 70
                4455565433688885 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00071
     DUF4606  44 laqkaF....lrqkktllesallkekleehlytkdsltligeihr 84 
                  a+++F    +++ ++ l++a+ +ek+ee    +d +++++++++
  CCG91319.1 116 FAKAQFyqtkIKRLQEDLKKAVAQEKYEEAATIRDEIAQLENLIK 160
                 34444411005555677889999***************9999876 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.1    0.0028       4.3      23      54 ..       2      34 ..       1      47 [. 0.86
   2 ?    5.0   1.2     0.016        24      19      57 ..      61      93 ..      51     134 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0028
        Elf1 23 dCpfCnheksvevkldkkekiaevs.CkvCges 54
                +C fCn+  +v+ +    ek+ ++  C++C ++
  CCG91319.1  2 KCAFCNEMATVHLTQIVGEKMQKIDlCEKCAKE 34
                7***********999999998888669999875 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.016
        Elf1 19 ptkFdCpfCnheksvevkldkkekiaevsCkvCgesfet 57
                + + +Cp C+ +   e +++k   ++++ C  C e+f+ 
  CCG91319.1 61 EGELSCPQCGFT---ETDFKK---TGRLGCPACYETFSE 93
                556788888888...555554...588888888886654 PP

>> zf-C4pol  C4-type zinc-finger of DNA polymerase delta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.7   0.00052      0.78       1      68 [.       3      88 ..       3      90 .. 0.60
   2 ?   -1.5   0.1       2.4   3.6e+03      33      33 ..     135     135 ..     114     159 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00052
    zf-C4pol  1 ClvCk............eklk.kalCkkCrsdkqes...llkllsrlkelekklnelet...vCqsCaqgsleeevkCdsrdCpvfY 68
                C  C+            ek++  +lC+kC+++k  s   +++l + l   e+  n++++    C +C + + ++  k   + Cp  Y
  CCG91319.1  3 CAFCNematvhltqivgEKMQkIDLCEKCAKEKGISdsmAFSLTDMLLGDETTKNHIHEgelSCPQC-GFTETDFKKTGRLGCPACY 88
                888886666555555543343789*****98876666676777777665555555554422278888.4444445555666777666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.4
    zf-C4pol  33 e 33 
                 +
  CCG91319.1 135 K 135
                 1 PP

>> Cys_rich_CPXG  Cysteine-rich CPXCG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.3    0.0048       7.1       2      32 ..       2      33 ..       1      39 [. 0.88
   2 ?    0.6   0.1      0.36   5.3e+02       2       7 ..      65      70 ..      64      74 .. 0.84
   3 ?    3.3   0.1     0.052        78       3      15 ..      84      96 ..      82     103 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0048
  Cys_rich_CPXG  2 qCPyCgeeievlvDlsag.dqeYieDCqvCCr 32
                   +C++C e  +v +    g + + i+ C+ C +
     CCG91319.1  2 KCAFCNEMATVHLTQIVGeKMQKIDLCEKCAK 33
                   7***********99999978889999999965 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.36
  Cys_rich_CPXG  2 qCPyCg 7 
                   +CP Cg
     CCG91319.1 65 SCPQCG 70
                   7****9 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.052
  Cys_rich_CPXG  3 CPyCgeeievlvD 15
                   CP C e+++  ++
     CCG91319.1 84 CPACYETFSEIIE 96
                   ******9987776 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       4.1   6.2e+03      27      32 ..       2       7 ..       1       8 [. 0.68
   2 ?    2.5   0.0     0.097   1.5e+02       5      17 ..      28      40 ..      27      47 .. 0.86
   3 ?    3.9   0.1     0.033        50       4      10 ..      65      71 ..      63      72 .. 0.78
   4 ?    4.4   0.1     0.024        36      22      35 ..      78      91 ..      76      92 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.1
  zinc_ribbon_4 27 rCskCg 32
                   +C+ C+
     CCG91319.1  2 KCAFCN 7 
                   788775 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.097
  zinc_ribbon_4  5 CpsCkakyeidde 17
                   C++C ++  i+d+
     CCG91319.1 28 CEKCAKEKGISDS 40
                   99**999888887 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.033
  zinc_ribbon_4  4 tCpsCka 10
                   +Cp+C++
     CCG91319.1 65 SCPQCGF 71
                   8999986 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.024
  zinc_ribbon_4 22 kgvkvrCskCghvF 35
                   k++++ C++C ++F
     CCG91319.1 78 KTGRLGCPACYETF 91
                   56778899999998 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4       1.1   1.6e+03      24      44 ..       2      23 ..       1      41 [. 0.68
   2 ?    7.7   0.0    0.0025       3.7       3      32 ..      45      73 ..      44      81 .. 0.84
   3 ?    4.1   0.0     0.031        46      23      48 ..      82     107 ..      80     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.1
                   T-HHHHHHHHHHH.HHHHHHHH CS
  Thioredoxin_4 24 rCphCakfeeeve.klleeyid 44
                   +C  C ++++  + +++ e ++
     CCG91319.1  2 KCAFCNEMATVHLtQIVGEKMQ 23
                   6777777766655566666555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0025
                   SSSEEES-TT-SEEEEEEE-TT-HHHHHHH CS
  Thioredoxin_4  3 etdiviGnpdApvtvieyedlrCphCakfe 32
                    td+ +G+++ +++++e   l+Cp C   e
     CCG91319.1 45 LTDMLLGDETTKNHIHE-GELSCPQCGFTE 73
                   589**************.89******6555 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.031
                    TT-HHHHHHHHHHHHHHHHHHHTTSE CS
  Thioredoxin_4  23 lrCphCakfeeeveklleeyidtGkv 48 
                    l Cp C + + e+ +++ +++ +G v
     CCG91319.1  82 LGCPACYETFSEIIETILKDMHKGVV 107
                    67******888888777777899876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1942  (0.108316); expected 358.6 (0.02)
Passed bias filter:                      981  (0.0547158); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 1183.79
//
Query:       CCG91320.1  [L=46]
Description: hypothetical protein MFUM_1020044 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 350.51
//
Query:       CCG91321.1  [L=294]
Description: putative branched-chain-amino-acid aminotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-56  190.2   0.0    5.6e-56  189.9   0.0    1.1  1  Aminotran_4  Amino-transferase class IV
  ------ inclusion threshold ------
      0.084   13.2   0.0       0.21   11.9   0.0    1.6  1  Ish1         Putative stress-responsive nuclear envelope prot


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.9   0.0   6.2e-60   5.6e-56       1     223 []      29     256 ..      29     256 .. 0.98

  Alignments for each domain:
  == domain 1  score: 189.9 bits;  conditional E-value: 6.2e-60
  Aminotran_4   1 glfEtmrvyngeiffldeHleRLrksaellglelpfdeeelrkileelleannsengrlrllvsrgggglg...aatsepsvavyvsalppgpeseke 95 
                  g+fE++r+yn+++f+l++H+eRL  sa++++l++p++ ee+++++ e+ ++n+ eng++r +v+rg g+lg    ++++p+++++++++ + ++  ++
   CCG91321.1  29 GVFEGIRAYNRRVFRLERHIERLFDSAKAINLSIPLSPEEFSEAILETCRQNEIENGYIRAVVTRGIGDLGlnpLHCQKPTIFIIADKILLYNPKIYQ 126
                  8***********************************************************************99999999999999999999999999 PP

  Aminotran_4  96 ..lplvtssdvrrdapsplpgaKtlnyldnvlarreakergadevllvdedgnvtEgstsNvfivkggelitPplssgiLpGitrrallelakalgle 191
                    l+++t s +  ++ s  p +K+lnyl+ +la+ ea+  gade ll+++  ++ E+++ N+f+vk+g + tPp+s g+LpGitr+++l+lak+  l+
   CCG91321.1 127 egLTVRTVSTRISSHGSISPAIKSLNYLNKILAKIEANLSGADEGLLLNQLDHIAECTSENIFLVKNGIVMTPPVSAGLLPGITRETILSLAKEMELK 224
                  9*99999999**************************************************************************************** PP

  Aminotran_4 192 veereitlkdleeadeafltntlrgvlpvrsi 223
                   ee+++ l d+  a+e+f+t+t +++ pv ++
   CCG91321.1 225 TEEKNLVLYDIWTAEEVFITGTGAEIAPVVEV 256
                  *****************************875 PP

>> Ish1  Putative stress-responsive nuclear envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.3e-05      0.21      12      36 ..     189     220 ..     189     220 .. 0.96

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.3e-05
        Ish1  12 WLdshGipvskaas.......tRdeLlklard 36 
                 +L ++Gi+ +++ s       tR+ +l la++
  CCG91321.1 189 FLVKNGIVMTPPVSagllpgiTRETILSLAKE 220
                 79******99********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2267.98
//
Query:       CCG91322.1  [L=231]
Description: transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-29  101.3   0.0    8.4e-29  100.8   0.0    1.2  1  ABC_tran      ABC transporter
    6.1e-05   22.6   0.0     0.0039   16.7   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
    0.00012   22.1   0.9      0.073   12.9   0.2    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00026   21.2   1.1     0.0094   16.2   1.1    2.1  1  AAA_22        AAA domain
     0.0019   18.7   1.2      0.043   14.3   0.2    2.2  2  AAA_23        AAA domain
  ------ inclusion threshold ------
      0.011   15.4   0.1      0.022   14.5   0.1    1.4  1  AAA_29        P-loop containing region of AAA domain
      0.026   14.9   0.4      0.045   14.1   0.4    1.6  1  AAA_16        AAA ATPase domain
      0.035   14.0   0.5      0.079   12.9   0.5    1.5  1  NACHT         NACHT domain
      0.036   14.6   0.0      0.056   14.0   0.0    1.5  1  AAA_18        AAA domain
       0.04   13.5   0.0        6.1    6.4   0.1    2.2  2  AAA_25        AAA domain
      0.084   13.1   0.1       0.17   12.1   0.0    1.5  2  AAA_28        AAA domain
       0.15   11.7   0.0       0.32   10.7   0.0    1.5  1  AAA_30        AAA domain
       0.16   11.6   0.0         17    4.9   0.0    2.2  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   6.1e-32   8.4e-29       2     136 ..      26     170 ..      25     171 .. 0.90

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 6.1e-32
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren..........esdeeie 86 
                 +++++ ++eg    i G +G+GK+tLl+ll gl+kp++G il++g+++ +       ++  + ig+++q  +l pel++ en            ++++ 
  CCG91322.1  26 SKLHVRFEEGLFFTIQGASGSGKTTLLQLLGGLEKPDKGYILYRGENILQlsakGLAKWRAETIGFVFQSYHLLPELSALENielpaliigkGNQKKAM 124
                 6789999******************************************99995455566678**************************8877777788 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++l+ +gl++ ++++     ++LSgG++qrva+aral ++p+++l+DEpt
  CCG91322.1 125 ELLEAVGLEKRANHRP----NELSGGEQQRVAIARALRNDPPVILADEPT 170
                 8888888888666666....*****************************9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.023        32      26      41 ..      37      52 ..      25      56 .. 0.76
   2 !   16.7   0.0   2.8e-06    0.0039     120     209 ..     120     213 ..     112     222 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.023
                EEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnll 41
                f  i G+ GSGK+ ll
  CCG91322.1 37 FFTIQGASGSGKTTLL 52
                67899********987 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.8e-06
                 HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 120 kkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislreemlekadklv 209
                 +k+ +elle +g++k       +LSgGe++ va+a        +  p+ l De   +LD +  k++ +ll   +k+kn  +i +++++e+ +  dk +
  CCG91322.1 120 QKKAMELLEAVGLEKRanhrpnELSGGEQQRVAIARA----LRNDPPVILADEPTGNLDGETGKQIINLLLsiQKEKNKTLILVTHEREIASLGDKQL 213
                 55566666666666655555559*******9998754....45677999**************99999987567788899********9999888765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.2   5.3e-05     0.073       4      22 ..      40      58 ..      37      82 .. 0.82
   2 !    8.4   0.0    0.0013       1.7     234     298 ..     140     202 ..      86     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.3e-05
      AAA_21  4 liGpNgsGKSnLLdaldll 22
                + G+ gsGK++LL++l +l
  CCG91322.1 40 IQGASGSGKTTLLQLLGGL 58
                669*************888 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0013
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHS 298
                 ++elS G ++  a++ al  ++   +++l DEp  +L+ +  + ++ ll ++ ++++  +il+TH 
  CCG91322.1 140 PNELSGGEQQRVAIARALRNDP---PVILADEPTGNLDGETGKQIINLLlSIQKEKNKTLILVTHE 202
                 5779999999978888888777...*********************999644444789*******6 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.1   6.8e-06    0.0094       5     133 ..      35     205 ..      30     208 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.8e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee....................................erpevv.fvtlpsst...sskdllrellra 63 
                   + ++ G sG+GKTtll+ l    +     ++                                    ++ + +  ++lp++    + ++ + ell+a
  CCG91322.1  35 GLFFTIQGASGSGKTTLLQLLGGLEKP----DKgyilyrgenilqlsakglakwraetigfvfqsyhllPELSALeNIELPALIigkGNQKKAMELLEA 129
                 5678999**************988643....33446688999999999999998887777777666666333333555555555554445556677777 PP

      AAA_22  64 lglelkaerlsseell.ealeqalrarav...ielliiDEaqh.lr..s.eealeeLrsllnlsrkgvqliLvGtp.el 133
                 +gle+ a +++  el     ++ + ara    +++++ DE    l+  + +++++ L s+++  +k+ +liLv ++ e+
  CCG91322.1 130 VGLEKRA-NHRPNELSgGEQQRVAIARALrndPPVILADEPTGnLDgeTgKQIINLLLSIQK--EKNKTLILVTHErEI 205
                 7777777.66666666433333333333357888******8877988626999999999999..999999999776555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   3.1e-05     0.043      11      38 ..      26      54 ..      16      57 .. 0.83
   2 ?    3.4   0.1     0.066        92     105     143 ..     166     204 ..      96     230 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-05
      AAA_23 11 rdqeidFskglt.lItGpNGaGKTTildA 38
                ++ ++ F+ gl+  I G  G+GKTT+l+ 
  CCG91322.1 26 SKLHVRFEEGLFfTIQGASGSGKTTLLQL 54
                56789998886538************986 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.066
      AAA_23 105 kkaklelleideleqfisellgskkiilnlilflgqerf 143
                  ++ + +l+ ++ +q+i+ ll+++k+ ++ +++   er+
  CCG91322.1 166 ADEPTGNLDGETGKQIINLLLSIQKEKNKTLILVTHERE 204
                 555667778888999999999999998877777777774 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.6e-05     0.022      17      39 ..      30      52 ..      24      56 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.6e-05
      AAA_29 17 ieidlkg.atlltGpsGsGKSTll 39
                ++++ +g ++ + G+sGsGK+Tll
  CCG91322.1 30 VRFE-EGlFFTIQGASGSGKTTLL 52
                5565.567899************8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   3.2e-05     0.045      25      58 ..      36      69 ..      23     215 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.2e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekd.ggiflrg 58
                    + G+sG+GK++l++ l   lek  +g+ l+ 
  CCG91322.1 36 LFFTIQGASGSGKTTLLQLLGG-LEKPdKGYILYR 69
                567799***********99984.555524666444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.5   5.7e-05     0.079       4      19 ..      39      54 ..      37      60 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.7e-05
                EEEC-TTTCHHHHHHH CS
       NACHT  4 ilqGeaGsGKTtLlqk 19
                 +qG++GsGKTtLlq 
  CCG91322.1 39 TIQGASGSGKTTLLQL 54
                59************95 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.1e-05     0.056       3      67 ..      40     130 ..      39     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.1e-05
      AAA_18   3 ltGtpGvGKttlakeL.......skrlgf........................gvnlrdvakenglllevdpealdeskrldedkldklldaleen 67 
                 + G++G+GKttl + L       +   g+                        g++ ++++   +l+  ++ e   + +++ +++++k++++le+ 
  CCG91322.1  40 IQGASGSGKTTLLQLLgglekpdK---GYilyrgenilqlsakglakwraetiGFVFQSYHLLPELSALENIE--LPALIIGKGNQKKAMELLEAV 130
                 78**************66643320...3355665556777777778888888888888888888888888888..888888888888888888765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0044       6.1      31      51 ..      33      53 ..      13      57 .. 0.81
   2 ?    5.0   0.0     0.012        16     162     190 ..     174     203 ..     164     205 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0044
      AAA_25 31 pagelallaGapgtGKttlal 51
                 +g +  + Ga+g+GKttl+ 
  CCG91322.1 33 EEGLFFTIQGASGSGKTTLLQ 53
                567778899**********86 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.012
      AAA_25 162 nsdv.galvealeriarrtgaavllvhHvg 190
                 + ++ +++++ l +i+++++ +++lv H +
  CCG91322.1 174 DGETgKQIINLLLSIQKEKNKTLILVTHER 203
                 455569**********************75 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012      0.17       3      33 ..      39      75 ..      37      93 .. 0.69
   2 ?   -3.6   0.0       8.2   1.1e+04      62      79 ..     149     167 ..     135     169 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
      AAA_28  3 vitGgestGKTtlleaLa.....argypvv.pEaare 33
                 i G++++GKTtll+ L      ++gy  +  E   +
  CCG91322.1 39 TIQGASGSGKTTLLQLLGglekpDKGYILYrGENILQ 75
                588************9985533333665555555555 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8.2
      AAA_28  62 eqleeeaaa..aankvlfcD 79 
                 ++++ ++ a  ++++v++ D
  CCG91322.1 149 QRVAIAR-AlrNDPPVILAD 167
                 2222222.223556666555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00023      0.32      17      38 ..      34      55 ..      28      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
      AAA_30 17 gdrvavltGpAGtGKttalkal 38
                + ++ +++G+ G+GKtt+l+ l
  CCG91322.1 34 EGLFFTIQGASGSGKTTLLQLL 55
                556889*************976 PP

>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.013        17       6      72 ..      20      96 ..      17     160 .. 0.80
   2 ?    4.9   0.0     0.013        17      23      56 ..     177     210 ..     164     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.013
                  HHHHHHHHCT--E..........EEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHH.TS-EEEEE-C CS
  TPP_enzyme_N  6 alvraLkalgveh..........vfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyarat.gkpgvvlvts 72
                  a +++L++l v+           + g   +++l+ll  l++ +   ++l r E+     A g+a+     +g v+ ++
    CCG91322.1 20 ACIEVLSKLHVRFeeglfftiqgASGSGKTTLLQLLGGLEKPD-KGYILYRGENILQLSAKGLAKWRaETIGFVFQSY 96
                  6677888888888888877766666666778888999999995.9********************5547888888765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.013
                   --CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHH CS
  TPP_enzyme_N  23 pGsrilplldalseeqgirvvlarhEqgaafaAd 56 
                    G++i +ll ++++e++ +++l+ hE+  a   d
    CCG91322.1 177 TGKQIINLLLSIQKEKNKTLILVTHEREIASLGD 210
                   6999***********************9987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1577.73
//
Query:       CCG91323.1  [L=416]
Description: ABC-type transport system, involved in lipoprotein release, permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-14   54.0  14.3    5.8e-14   52.3   2.6    3.3  3  FtsX      FtsX-like permease family
    1.8e-13   51.3   0.2    3.7e-13   50.3   0.2    1.5  1  MacB_PCD  MacB-like periplasmic core domain


Domain annotation for each model (and alignments):
>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.6    0.0085        76      64      88 ..      21      45 ..      16      71 .. 0.69
   2 !    5.0   0.2    0.0037        33      58      83 ..     270     295 ..     205     300 .. 0.72
   3 !   52.3   2.6   6.5e-18   5.8e-14       2      96 .]     302     409 ..     301     409 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0085
        FtsX 64 idlitvliiivlllllallagllsi 88
                +++it+l +++++l +a+l+++ls+
  CCG91323.1 21 VSVITLLSVLGVSLGVAVLVIVLSV 45
                4556666666666666666655554 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0037
        FtsX  58 selkisidlitvliiivlllllalla 83 
                  ++++++ l+ ++i+++++l+ +l++
  CCG91323.1 270 ERIAMTFILFFIIIVAAFGLCSTLIT 295
                 45556666666666666666665554 PP

  == domain 3  score: 52.3 bits;  conditional E-value: 6.5e-18
        FtsX   2 reigilralGmkkkqvlllllteillitlvalviGlglgllaaql...lsdvllssvf....s......selkisidlitvliiivlllllallaglls 87 
                 +eig+l+alG+++ q+l ++++ +++++++++++Gl+l+++ +++   + d++++ ++    s      s +++ id++ v+ i + ++++++la++++
  CCG91323.1 302 KEIGLLKALGARDDQILSIFVLHGFIVGVFGTLLGLVLASFSLYYrnsFRDFIGKHLGidlfSadvyhfSTIPMVIDPLLVAGISFGAIVICILAAWIP 400
                 8*************************************9999999666666666664433332566677****************************** PP

        FtsX  88 iskilkkep 96 
                 + +++k +p
  CCG91323.1 401 AMNAAKLTP 409
                 ****99876 PP

>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.2   4.1e-17   3.7e-13       1     193 [.      25     244 ..      25     246 .. 0.71

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 4.1e-17
    MacB_PCD   1 slltvLGiaiGvaaviaivslgeglqasvlsqisdlgnlvtvtpgkgsgeslsdpdve.alrrevp.veavapvv.....tvrgggsgeeevtvvg... 89 
                 +ll+vLG+ +Gva++++++s+++g++  +++ i +  +  ++ +++g+   ls p++  +l ++ p v+++ap+v     +  ++++ ++   ++g   
  CCG91323.1  25 TLLSVLGVSLGVAVLVIVLSVMAGFSLELEKKIIGFNA--HLVVSNGE--ILSRPQAImELVEKDPlVVGAAPFVsgpvmV-EYASRITT-PILRGini 117
                 89********************************8865..54444333..34444331133345799******99888642.44433122.24677442 PP

    MacB_PCD  90 .vdpdyfkvfglklaeGrffteadlrggpnvvvigeelaer..lfpvGdtirl.......................kpftVvGvledppgsgsalgdda 162
                   +++   ++++ l +G++    dl+ g+  v++gee a+      +Gd++ +                        +ft++G++ +  g    +++++
  CCG91323.1 118 dLEEKVIPIKKF-LIAGSY----DLE-GES-VIVGEEWAKHsdA-YLGDKVLIyaprhfqafrdnyqkgkqttilpSEFTITGIFRT--G-LYEYDASY 205
                 222466667777.677855....555.555.999*****99443.489999999999999999999888887778877******943..2.22445555 PP

    MacB_PCD 163 vylplttlqrrs........itvrlkdgadleaaaaele 193
                  +++l+++q+ +        + +r++++  +++++++l+
  CCG91323.1 206 FITSLANAQYLYslgngvhgVSIRIQNPLAANKVKERLN 244
                 66667777655566788888**************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3156.54
//
Query:       CCG91324.1  [L=285]
Description: Prephenate dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-58  197.7   0.0    1.9e-58  197.5   0.0    1.0  1  PDH             Prephenate dehydrogenase
    4.9e-07   30.2   0.3    1.1e-06   29.2   0.3    1.5  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    1.8e-06   28.0   0.9    8.7e-05   22.5   0.9    2.3  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
    3.3e-05   24.1   0.0    5.1e-05   23.5   0.0    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    0.00059   19.5   0.5     0.0014   18.3   0.5    1.6  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0052   16.9   0.1      0.046   13.8   0.0    2.1  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
     0.0052   16.4   0.0     0.0083   15.7   0.0    1.2  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
  ------ inclusion threshold ------
      0.019   14.3   0.0      0.034   13.5   0.0    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.034   14.4   0.6       0.14   12.4   0.6    1.9  1  TrkA_N          TrkA-N domain
      0.038   13.8   0.0      0.082   12.7   0.0    1.5  1  DUF4020         Domain of unknown function (DUF4020)
      0.077   13.1   0.1       0.19   11.8   0.1    1.6  1  Ldh_1_N         lactate/malate dehydrogenase, NAD binding dom
       0.11   13.0   0.0       0.21   12.0   0.0    1.5  1  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,
       0.12   12.9   0.0       0.25   11.9   0.0    1.6  1  CoA_binding_2   CoA binding domain


Domain annotation for each model (and alignments):
>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.5   0.0   1.3e-61   1.9e-58       1     257 [.      23     273 ..      23     274 .. 0.93

  Alignments for each domain:
  == domain 1  score: 197.5 bits;  conditional E-value: 1.3e-61
                 HHHHHHHTT--SEEEEE-SSHHHHHHHHHTTSSSEEES-.GGGGCCGSEEEE-S-GGGHHHHHHHHHHHS-TT-EEEE--S--CHHHHHHHHHCC..GC CS
         PDH   1 laralrrkgfkvtvigydideekaeaalelglvdeatdd.ieavkeadivvlavPvevilevlkelaphlkedalitDvgsvKekvvreleellkegks 98 
                 +a+a++++g  +++    ++ee    + + gl+ +  ++  + +  ad+vv++vP ++++ +l +++ h++++ +itDv svK++v+   +ell e+++
  CCG91324.1  23 IAKAVKERGLCKKLAIAAREEELDIVK-RSGLEADLYHQlASSIAGADLVVICVPFDALKTILLQIKDHIEPQTVITDVISVKKEVMTLFSELLGEKVE 120
                 799999999988887777766655544.677777776666899******************************************************** PP

                 EEEEEES---S-SSGGG--TTTTTT-EEEEEE-TTS-HHHHHHHHHHHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHCHHCCCCHHHHCG CS
         PDH  99 fvgghPmaGteksGvdaareelfenavviLtPtektdkealekvkelleevgarvilmspeeHDrvvavvshlphvvaialaatlkekkndekeirkla 197
                  +g+hPm G+e sG daa+  lfe+   iLtP ++  + a++++k ++e++g   i++s+eeHD  v+ +shlph++a+ l++      +   ++ +l 
  CCG91324.1 121 WIGSHPMTGSERSGFDAANSLLFEGSTTILTPANHVSPLAIDCIKTFWEKLGSIPIELSAEEHDALVSEISHLPHLLAAVLIE------SVSSQSLQLV 213
                 ***********************************************************************************......3444578899 PP

                 TCCHHHHHCGGGS-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH CS
         PDH 198 sggfrdvtRiaksnPelwadilleNkeavlealdkfikelkklkelienedaeeLvellk 257
                 ++gf+d+tRia++ P+lw++il++N++ v+++ +kfi++ +k+ ++++++d+  L+ell+
  CCG91324.1 214 GPGFKDTTRIAAGCPRLWKSILMANRHYVQKIGEKFIRQFQKALNILQQGDEKALFELLN 273
                 *********************************************************986 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.3   7.7e-10   1.1e-06       1      94 [.      10     100 ..      10     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 7.7e-10
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEEEE CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlselakdalkgklvisv 94 
                    +i iiG G +g ++a+ + ++g   +++ +a  r++e     ++ l++++ + + +  ++ ad vv++v++ +++ +l +++++   ++++ +v
     CCG91324.1  10 TITIIGPGLIGGSIAKAVKERG-LCKKLAIA-AREEELDIVKRSGLEADLYH-QLASSIAGADLVVICVPFDALKTILLQIKDHIEPQTVITDV 100
                    599*******************.88889878.88888777777888899999.88999999********************7777777666665 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.9   6.3e-08   8.7e-05       2     121 ..      11     118 ..      10     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 6.3e-08
                     EEEE--SHHHHHHHHHHHTTT.--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--T CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaeng.hevrlwvreeelieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqalrevlkklkgllkk 95 
                     i+++G G  G ++Ak+++e+g ++            +i +++e+ + ++   l+++l  + +la++++gad++v+ vP  al+++l ++k+++++
      CCG91324.1  11 ITIIGPGLIGGSIAKAVKERGlCKKL----------AIAAREEELDIVKRSGLEADL--YHQLASSIAGADLVVICVPFDALKTILLQIKDHIEP 93 
                     89999999999999999999943333..........345555555556666666655..678*******************************99 PP

                     T-EEEE---SEET.TTEEHHHHHHHH CS
  NAD_Gly3P_dh_N  96 kailvsliKGieegtlkllsevieee 121
                     ++++  +i  ++++ + l+se + e+
      CCG91324.1  94 QTVITDVI-SVKKEVMTLFSELLGEK 118
                     99877666.46666777777777766 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   3.7e-08   5.1e-05       2     121 ..      11     132 ..      10     156 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3.7e-08
                    EEEE--SHHHHHHHHHHHHTT-..EEEEE-SSHHHHHHHHHTT..EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE-S--- CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagy..kvavynrtkekveelvaeg..akaaesieelvasldvvitmvkagkavdeviegllealkkgdilidgstss 93 
                    i +iG G +G ++a+ ++++g   k+a+  r +e+++ +  +g  a++++++++ +a++d+v+++v+  +a ++++ ++++++++++++ d+ +++
     CCG91324.1  11 ITIIGPGLIGGSIAKAVKERGLckKLAIAAR-EEELDIVKRSGleADLYHQLASSIAGADLVVICVPF-DALKTILLQIKDHIEPQTVITDVISVK 104
                    899*****************97323444443.3566666666588999*******************9.789********************9998 PP

                    HHHHHHHHHHHHHTT-EEEEE.EEESHHH CS
  NAD_binding_2  94 pedtrelakelkekglkflda.PVSGGee 121
                     e  + +++ l e ++++++  P +G+e 
     CCG91324.1 105 KEVMTLFSELLGE-KVEWIGShPMTGSER 132
                    8776666555544.566665337777665 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.5     1e-06    0.0014       1      98 [.      11      97 ..      11     101 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1e-06
                EEEES-SHHHHHHHHHHHH.HTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEEE CS
        ApbA  1 iailGaGaiGsllaakLak.agadvtlilrsr.rlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldpntvv 98
                i+i+G+G iG+ +a   ++   ++   i+ ++ +l+ +k+ Gl+ + ++         +l+++    ++ +dlv+++v+   ++  l +ik++++p+tv+
  CCG91324.1 11 ITIIGPGLIGGSIAKAVKErGLCKKLAIAAREeELDIVKRSGLEADLYH---------QLASS----IAGADLVVICVPFDALKTILLQIKDHIEPQTVI 97
                89***************99677776666666669*********999999.........45555....7899**************************987 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.3e-05     0.046      13      83 ..       9      75 ..       2      99 .. 0.87
   2 ?    0.7   0.0      0.35   4.9e+02       3      56 ..     198     253 ..     196     278 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.3e-05
                  -EEEEES-SHHHHHHHHHHHCCT.-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-S CS
  Shikimate_DH 13 kkvlliGaGemaelvakhLlakg.vkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisat 83
                   ++++iG G ++  +ak+  ++g +kk+++a R+ e   +++++ + e   a  +++l + +a ad+v++++
    CCG91324.1  9 DTITIIGPGLIGGSIAKAVKERGlCKKLAIAAREEE--LDIVKRSGLE---ADLYHQLASSIAGADLVVICV 75
                  5799*****************9648********876..6888888555...99**************99886 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.35
                   HHHHHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHH..HHHHHHHH CS
  Shikimate_DH   3 akkkleslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtler..akelaeel 56 
                   a   +es++++   l+G G   +  + + + +  k+++ aNR + +   +++ +++
    CCG91324.1 198 AAVLIESVSSQSLQLVGPGFKDTTRIAAGCPRLWKSILMANRHYVQkiGEKFIRQF 253
                   55566778888888899998888888888888899999999987331134444444 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     6e-06    0.0083       6      90 ..      10      96 ..       7     103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6e-06
                -EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EE...EEHHHHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT-E CS
        IlvN  6 kiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfev...ltvaeavkkadvvmiliPDelqkevyeeeiepnlkegka 90
                +i++iG G  G + a+ +++ gl   +++ + ++ ++  k++g+e    +++a  ++ ad+v+i +P  + k+++  +i+++++ +++
  CCG91324.1 10 TITIIGPGLIGGSIAKAVKERGLCKKLAIAAREEELDIVKRSGLEAdlyHQLASSIAGADLVVICVPFDALKTIL-LQIKDHIEPQTV 96
                79*********************76666666666788888888887221455666789*********88888888.688888887665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.5e-05     0.034      37     102 ..       9      78 ..       2      88 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-05
                   SEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTC...EECSHHHHHHH-SEEEE-S--S CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgv...elvsleellaesDivslhlplt 102
                    t+ iiG G IG ++ak +k+ g+ k +a+  ++++ + +++ g+    +++l   +a +D v++++p  
    CCG91324.1   9 DTITIIGPGLIGGSIAKAVKERGLcKKLAIAAREEELDIVKRSGLeadLYHQLASSIAGADLVVICVPFD 78 
                   5899****************888667777777777666555555511245699999999********975 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6    0.0001      0.14       1      97 [.      11     101 ..      11     112 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
                 EEEES-SHHHHHHHHHHHHTT..EEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHT..TGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEE CS
      TrkA_N   1 iiiiGlGrvGrslaeeLsegg..kdvvvidkdeerveelreeglevvvgdatdeevLeea..giekadaviaatgddeanilavllakelnpkkkiiar 95 
                 i iiG G +G s+a+ ++e+g  k  ++i  +ee ++ +++ gl        + ++ +++   i+ ad+v+++++ d+ +++++++  ++ p +++i+ 
  CCG91324.1  11 ITIIGPGLIGGSIAKAVKERGlcK-KLAIAAREEELDIVKRSGL--------EADLYHQLasSIAGADLVVICVPFDALKTILLQIKDHIEP-QTVITD 99 
                 679****************76544.7777777777777766664........33333333228999*************9999888877777.578776 PP

                 ES CS
      TrkA_N  96 aq 97 
                 + 
  CCG91324.1 100 VI 101
                 65 PP

>> DUF4020  Domain of unknown function (DUF4020)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.9e-05     0.082      55     101 ..     164     207 ..     115     217 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.9e-05
     DUF4020  55 levylreRgklggitlsltaaEaailvrwileleevlekalelvira 101
                 ++++++   klg i++ l+a E  +lv  i +l+ +l+ +l   +++
  CCG91324.1 164 IKTFWE---KLGSIPIELSAEEHDALVSEISHLPHLLAAVLIESVSS 207
                 566775...69***************************998655554 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00014      0.19       3      51 ..      11      62 ..      10      78 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
                EEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHH....HHHHHHHHHHHCHC CS
     Ldh_1_N  3 vavvGaaGgiGqslalllankkladelaLlDiake....kleGvaldlshist 51
                ++++G  G iG s+a ++++++l+++la+   ++e    k +G  +dl h  +
  CCG91324.1 11 ITIIGP-GLIGGSIAKAVKERGLCKKLAIAAREEEldivKRSGLEADLYHQLA 62
                89****.*********************9988877777788899999998765 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00015      0.21      53     100 ..      54     101 ..      32     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
                     CCEEES-CHHHHTT-SEEEE-S--GGGGGS-HHHHHHCC.SS-EEEESS CS
  UDPG_MGDP_dh_C  53 gvevvdsleealkgadaiviltehdefkeldlaklkelm.kpavvfDgr 100
                     ++ ++++l++ ++gad++vi+++ d +k++ l ++k+ +  + v+ D+ 
      CCG91324.1  54 EADLYHQLASSIAGADLVVICVPFDALKTI-LLQIKDHIePQTVITDVI 101
                     56788999*********************8.789999995555777776 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.25       4      97 ..      12     110 ..       9     125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
                    EEET--S-TTSHHHHHHHHHHHHT.--EEEESSS-SEETTEE.......S----T....T--EEEE-S-HHHHGGGHHHHHHH.--SEEEE-TT-- CS
  CoA_binding_2   4 aVvGasdnpgkfgykvlryllehg.lpvvpVnpkeeeilgek.......vyaslaedpepvdlvdvftppeatpeivkealal.gakavwlqpgse 90 
                     ++G    pg  g  +++ ++e+g ++ +++  +eee++ +k        y++la++    dlv++++p +a+ +i+ ++++  ++++v+    s+
     CCG91324.1  12 TIIG----PGLIGGSIAKAVKERGlCKKLAIAAREEELDIVKrsgleadLYHQLASSIAGADLVVICVPFDALKTILLQIKDHiEPQTVITDVISV 103
                    5555....6777888889999988788899999999999988888888899****87899********************6654899999877777 PP

                    -HHHHHH CS
  CoA_binding_2  91 deeaael 97 
                    ++e++ l
     CCG91324.1 104 KKEVMTL 110
                    7777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2045.76
//
Query:       CCG91325.1  [L=374]
Description: Histidinol-phosphate aminotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-58  197.4   0.0    4.4e-58  197.2   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II
    6.6e-05   21.9   0.0    0.00012   21.1   0.0    1.4  1  Alliinase_C    Allinase
  ------ inclusion threshold ------
      0.024   14.9   0.0      0.066   13.5   0.0    1.8  1  TAL_effector   TAL effector repeat
      0.054   13.8   0.0       0.13   12.6   0.0    1.6  1  HTH_Tnp_1      Transposase
      0.074   12.0   0.0       0.11   11.5   0.0    1.2  1  Aminotran_5    Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.2   0.0   1.2e-61   4.4e-58       2     363 .]      38     361 ..      37     361 .. 0.97

  Alignments for each domain:
  == domain 1  score: 197.2 bits;  conditional E-value: 1.2e-61
                    EEEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEE CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeil 97 
                    ++i+L+sne++ +    ++p +a+a ++     ++++ y++    ++l++ala  lg      +++e ++v+g+G++++ie+l+ l+     +e++
     CCG91325.1  38 EIIKLASNENPLG----PSPFAAEAIAR---NLHKIHLYPDGN-GYALKKALAASLG------IDPE-NIVLGNGSNEIIELLFHLFASSSTEEVI 118
                    68***********....*********76...9***********.799**********......****.*******************9999999** PP

                    EEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTC CS
  Aminotran_1_2  98 vpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagf 193
                     ++  +a yk +++l g+ + ++      +f+ dl+a++  +        ktk+i++++p+NPtGt ++ e+l + ld++ + ++++ +DeaY +f
     CCG91325.1 119 FSKYAFAVYKLMAELFGASFKEVD---DLSFSHDLHAMLHSIGP------KTKLIFIANPNNPTGTRIPNEQLYDFLDTVPE-HVVVAIDEAYIDF 204
                    ************************...68**************9......*******************************9.9************ PP

                    BSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 194 vfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelr 289
                    v +++   +t+++++++ n++i++++sK  GlaG+R+Gy ++ + ++++l+++ +pf+   l+q a++a+l+d++    ++ ++ +  ++  k+l 
     CCG91325.1 205 VPDPP---QTLSFIKKRENIVILRTFSKMHGLAGLRIGYGIAPKSIANYLQRARQPFNTNFLAQVAATASLEDKQ----HILQTLKITEEGKKRLE 293
                    **966...67***************************************************************99....999************** PP

                    HHHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 290 deLaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                    d++++lgl +++s ++++l+++++      ++k+ l++ g++++p++s+++ +++Rit+  +t+e+l +l+ea+
     CCG91325.1 294 DGFNRLGLRFIPSSANFILVHVGDGD---YVFKSFLKR-GIIIRPMKSYGLAEWVRITI--GTPEQLSKLLEAF 361
                    *************************9...9********.********************..**********985 PP

>> Alliinase_C  Allinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   3.2e-08   0.00012      66     214 ..      89     248 ..      79     310 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.2e-08
                  TSEEEEECHHHHHHHHHHHHHHHH..SSSSSEEEEE-SS--THHHHHTTTT-B.....TTEEEEEESTT-.--S..S-EEEEEESS-TTT--.----- CS
  Alliinase_C  66 dryivvGtGstqLlqalvyalspeasseskpvkvvaavPyysvykeqtsllds.....klykweGdaaayvkkknpeefielvtsPnnPdgl.lreav 157
                     iv+G+Gs ++++ l + ++++     ++ +v+ +   ++vyk  ++l+         + ++ d +a  ++  p+  + +++ PnnP g+ + ++ 
   CCG91325.1  89 PENIVLGNGSNEIIELLFHLFASS-----STEEVIFSKYAFAVYKLMAELFGAsfkevDDLSFSHDLHAMLHSIGPKTKLIFIANPNNPTGTrIPNEQ 181
                  5679**********9888877776.....4556777777789999999888651111145677888888889999999999********996444433 PP

                  -......-TT-EEEEEE-TT-.....STTTS---S-B--SEEEEEHHHHHS-GGG-EEEEEES-HHHH CS
  Alliinase_C 158 v......kgseakviyDlayY.....WPhytpitskadedimLftlskltGhaGsrlGWalvkdkeva 214
                  +        +++ v  D ay       P+     +k ++ ++L t+sk+ G aG r+G+++   k++a
   CCG91325.1 182 LydfldtVPEHVVVAIDEAYIdfvpdPPQTLSFIKKRENIVILRTFSKMHGLAGLRIGYGIAP-KSIA 248
                  33443322233444456666322221577666677777888999***************9753.4444 PP

>> TAL_effector  TAL effector repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.8e-05     0.066      18      33 .]      30      45 ..      27      45 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
                  HHTT--HHHHHHHHTS CS
  TAL_effector 18 rqrGfSradIVkIAgN 33
                  r++GfS+  I+k+A+N
    CCG91325.1 30 REYGFSPNEIIKLASN 45
                  89*************9 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.6e-05      0.13      20      39 ..      19      38 ..      12      48 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.6e-05
   HTH_Tnp_1 20 lepgksvsevArrhgvspnq 39
                +epgk++ e+Ar++g+spn 
  CCG91325.1 19 YEPGKPIEELAREYGFSPNE 38
                7*****************96 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     3e-05      0.11     126     177 ..     147     200 ..      60     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3e-05
                  CBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHH..TT-EEEEE-T CS
  Aminotran_5 126 eldldelekllnektklvaithvsnvtGtiqpveeigklakk..kgalvlvDaa 177
                  + dl ++ + + +ktkl++i+  +n tGt  p e++ + +    ++++v++D a
   CCG91325.1 147 SHDLHAMLHSIGPKTKLIFIANPNNPTGTRIPNEQLYDFLDTvpEHVVVAIDEA 200
                  5689999****************************9999888544888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2908.29
//
Query:       CCG91326.1  [L=164]
Description: Protein-tyrosine-phosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-08   33.2   0.0    6.8e-08   33.0   0.0    1.2  1  LMWPc     Low molecular weight phosphotyrosine protein phosph


Domain annotation for each model (and alignments):
>> LMWPc  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   3.8e-12   6.8e-08       1     105 [.       6     110 ..       6     148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 3.8e-12
                 EEEEESSSSSHHHHHHHHHHHHHHHTT-CCCEEEEEEESTST.TT-B--HHHHHHHHHTTS--T..T-BB-BS-HHHHHHSSEEEES.SHHHHHHHHHH CS
       LMWPc   1 vlfvClgNicRSpmAealfrkelekagleekvevdSaGtgal.vgkradpravevlkekgisls..ghvarqlskeelaelDlilam.deenkrelesl 95 
                 +lf+C+gNi RS  A+a+f+  + ++  +  +e+ S G+ a        p + e+l +k i+ls  g  + ql+ ++l+++ l +a+ +ee+k+ l++l
  CCG91326.1   6 ILFICTGNIYRSRFAQAIFNFHAFQH--SLCWEAFSRGIAASkTPGLLSPFVKETLIQKNIPLSfaGTDPVQLHIRDLQNATLRIALrEEEHKEPLKNL 102
                 89******************998885..7788********99999999*************98744778999***************888999999999 PP

                 CCTTGGGGEE CS
       LMWPc  96 apekekakvk 105
                  p+   +k +
  CCG91326.1 103 FPG--WEKNC 110
                 988..23444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1266.35
//
Query:       CCG91327.1  [L=170]
Description: NADH-quinone oxidoreductase subunit B [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-24   86.5   0.1    1.7e-24   86.1   0.1    1.2  1  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.1   9.7e-29   1.7e-24       4     131 .]      44     152 ..      42     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 9.7e-29
                  HHHHHT-TTTTHHHHHHTEEEEEETTT-S--HHHHHHTHTTTSEEEEEESBE...EEEHHHHHHHHGGGSSEEEEESHHHHH-TGGGSTT-TEE-HHH CS
  Oxidored_q6   4 csisllaleedlldllelielryhetlladskeeeieakekeadvlvveGavtrkpkealellkelaekakaviavGtCAafGGipaaannpsvgeev 101
                  c i+l+++    +d+      r++ +++  s         +++dv++v G+vt k++  +++++e+++++k+via+G+CA++GG+++ ++    +   
   CCG91327.1  44 CAIELMSSACARFDI-----SRFGAEVMRFSP--------RQCDVMIVAGTVTYKMAYSVKRIYEQMPDPKWVIAMGACASSGGMYRSYS----V--L 122
                  778887777777888.....677666655444........49********************************************4433....4..4 PP

                  HHHHC.S-E.EEE-SSS--HHHHHHHHHHH CS
  Oxidored_q6 102 gellevvpvdinipGCPphpeailetllal 131
                  +++++ +pvd++++GCPp+pea+l++l +l
   CCG91327.1 123 QGIDQLLPVDVYVSGCPPRPEALLDALIKL 152
                  69************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1394.14
//
Query:       CCG91328.1  [L=212]
Description: NADH-quinone oxidoreductase subunit C [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-42  144.8   0.0    2.5e-42  144.3   0.0    1.2  1  Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd s


Domain annotation for each model (and alignments):
>> Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.3   0.0   1.4e-46   2.5e-42       6     121 ..      37     152 ..      32     153 .. 0.94

  Alignments for each domain:
  == domain 1  score: 144.3 bits;  conditional E-value: 1.4e-46
                     HHHHHHHHHHHH...TT--EEEEEEEEETT..SSSEEEEEEEE--S-.-EEEEEE....-S-BEE--TTT-STHHHHHHHHHHHSHHBCTTSSTS CS
  Complex1_30kDa   6 edllevakflkdeeelgfdvlsdltavDek..eerfevvyhllsleknerirvkvevdeeepevpSvtdlfpgadwyEREayDmfGivfeghpdl 98 
                     + ++eva+flk+  e gf++l d+++vD+   e+rfevvyh+++lek +++r+k +v+e++p vp+++ ++p+a+w+EREayDmfGi feghpdl
      CCG91328.1  37 AMIQEVARFLKE--EKGFSLLLDISGVDHLgeEPRFEVVYHFYNLEKGVSLRIKGRVSESNPIVPTLAFVYPTANWHEREAYDMFGIIFEGHPDL 129
                     5689*******9..589***********66779************************999*********************************** PP

                     S-SSSSTTSSS-TTSTTS----- CS
  Complex1_30kDa  99 rrillpedfeghPLRkdfplsge 121
                     rril++e++ ++PLRkdfp++g+
      CCG91328.1 130 RRILMWEGYPYFPLRKDFPVEGK 152
                     *******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1549.59
//
Query:       CCG91329.1  [L=418]
Description: NADH-quinone oxidoreductase subunit D [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.7e-116  386.1   0.0   8.2e-116  385.8   0.0    1.1  1  Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd s


Domain annotation for each model (and alignments):
>> Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  385.8   0.0  4.6e-120  8.2e-116       1     271 []     148     418 .]     148     418 .] 1.00

  Alignments for each domain:
  == domain 1  score: 385.8 bits;  conditional E-value: 4.6e-120
                     HTT-HHHHHHHHHHHHHHHHHHHHHHSSSSS-TTBESSBBSS---TTHHHHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHSSSS-BSHHHHHHHT CS
  Complex1_49kDa   1 DlGaltvflyafreRekildlleevtGaRltasyiriGGvarDlpegllekikeflkelekkldeleklltknrifkkRtkgvgvlskeealelg 95 
                     D+Ga++vfly+f+eReki+ l+ee+tGaR+t++y+riGG++rDlp+g+ ek+kef+k++  k+de+e lltkn+if++Rt+++gv+ske+a+++g
      CCG91329.1 148 DCGAVSVFLYTFTEREKIYTLIEELTGARFTTTYTRIGGLSRDLPPGWPEKVKEFVKQFLPKVDEIEGLLTKNKIFVDRTQNIGVISKEDAIDYG 242
                     89********************************************************************************************* PP

                     T-SSSSGGGT-TTTHHHHSS-SSGGGS-------SSBSHHHHHHHHHHHHHHHHHHHHHHHHT--.S-SB---TTTS---GGGGGT-HHHHHHHH CS
  Complex1_49kDa  96 ltGpvlRasGvkyDlRkaepYeaYdeldfdvpvgeegDvydRylvrveEmrqSlkIieqaleklpegpvlaedkkvalpkkeevkksmealihhf 190
                     ltGp+lR+sGv++DlRk++pY +Y+++df+vp+g+ gD++dRy+vr+eEmrqS++I+eqal+++p gp+ +++++ +lpkk++v ++me+li+hf
      CCG91329.1 243 LTGPNLRGSGVNHDLRKKNPYLGYEKYDFEVPLGSVGDCFDRYMVRIEEMRQSCRILEQALSDIPMGPIAVDEPRGYLPKKADVLTKMEELIQHF 337
                     *********************************************************************************************** PP

                     HHHHS-----SEEEEEEEEETTEEEEEEEEEESSSS-SEEEEE-HHHHTTTTHHHHTTTS-SGGGTHHHHTT---HHHHH- CS
  Complex1_49kDa 191 klvtegfkvpkgevyaavEapkGelgvylvsdgsskpyrlkirapsfvnlqaleellkgellaDvvailgsldivlgevDR 271
                      ++t+g+++p gevy   E+pkGelg+y+vs+g+  pyrlkir+psfvnl++l+++l g+ll+Dvvailgsld+v+ge+DR
      CCG91329.1 338 IIATQGVNAPVGEVYFGGENPKGELGFYIVSKGGGVPYRLKIRSPSFVNLSILPKILPGHLLSDVVAILGSLDFVMGECDR 418
                     ********************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3167.23
//
Query:       CCG91330.1  [L=177]
Description: NADH-ubiquinone oxidoreductase chain E [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-42  143.9   0.0    3.4e-42  143.7   0.0    1.0  1  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
  ------ inclusion threshold ------
      0.039   13.1   0.0      0.045   12.9   0.0    1.1  1  EutH             Ethanolamine utilisation protein, EutH
      0.089   12.3   0.0       0.13   11.7   0.0    1.2  1  Nepo_coat        Nepovirus coat protein, central domain


Domain annotation for each model (and alignments):
>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   0.0   5.7e-46   3.4e-42       2     144 ..      20     168 ..      19     169 .. 0.94

  Alignments for each domain:
  == domain 1  score: 143.7 bits;  conditional E-value: 5.7e-46
                      HHHHTTS-.-GGGGHHHHHHHHHHHHSS--HHHHHHHHHHHTS-HHHHHHHHTTSSSS-SS---SEEEEEE-SHHHHTTTHHHHHHHHHHHHT- CS
  2Fe-2S_thioredx   2 keiiakyp.ekrsaliplLklvQeeegwlpeealeevaellgvppaevyevatFYsmfnlkpvgkyviqvCtttpCalrgseeilealekklgi 94 
                      ++ii++yp +krsa +plL+l Q+++g+++++ ++ +ae+lg++p+ v+e+atFY m++++p g+y+ +vC+t++Cal+gs ei+e+++k+++ 
       CCG91330.1  20 ERIISQYPvSKRSASLPLLHLWQKHFGFVSPQGVQWIAEKLGLEPIAVEEIATFYPMIRQRPLGHYQFKVCRTLSCALAGSYEIFEYIKKSCKT 113
                      789****************************************************************************************998 PP

                      .....-TT-B-TTSSEEEEEES--S-GGGSSEEEESSSSEEES-HHHHHHHHHHH CS
  2Fe-2S_thioredx  95 .....kagettadgkftleeveClGaCanaPvvqindevyedltpekveeilekl 144
                           ++  +++dgkf++e veCl+aC+naPv+++n+e   d++++k+++il++l
       CCG91330.1 114 vnevgHHVYVSEDGKFSVEFVECLAACGNAPVMMLNEEEWMDVSQTKINAILDHL 168
                      54332333789*****************************************976 PP

>> EutH  Ethanolamine utilisation protein, EutH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.5e-06     0.045     206     275 ..      58     127 ..      42     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.5e-06
        EutH 206 itigLalaivealtgiklipglapi.eealeivgsiaivlaGafplvalitkvlkkpleklgkklgineva 275
                  ++gL  ++ve++  +  +   +p+ + +++++ ++++ laG++ +++ i+k + k ++++g+ + ++e +
  CCG91330.1  58 EKLGLEPIAVEEIATFYPMIRQRPLgHYQFKVCRTLSCALAGSYEIFEYIKKSC-KTVNEVGHHVYVSEDG 127
                 56777788888888888888888886779***********************99.6788999999888876 PP

>> Nepo_coat  Nepovirus coat protein, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.2e-05      0.13      66     117 ..      83     132 ..      81     148 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.2e-05
                 EEEEEEEEE-S-TT-EEEEEEEEEESS--S-HHHHCCSS-EEESSSEEEEEE CS
   Nepo_coat  66 GtirgkvksvssafvtislrvvvewngatptleellqrPhviveedgkfeik 117
                 G  ++kv  + s+++ +s+ ++   +    t++e+    hv+v edgkf+++
  CCG91330.1  83 GHYQFKVCRTLSCALAGSYEIFEYIKKSCKTVNEV--GHHVYVSEDGKFSVE 132
                 666899****************9999999999998..67***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1300.72
//
Query:       CCG91331.1  [L=456]
Description: NADH dehydrogenase I chain F [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-47  160.3   0.0    5.6e-47  159.4   0.0    1.5  1  Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subu
    3.1e-30  104.1   1.1      6e-30  103.2   1.1    1.5  1  NADH_4Fe-4S   NADH-ubiquinone oxidoreductase-F iron-sulfur bi
      2e-09   37.2   0.0    3.8e-09   36.3   0.0    1.5  1  SLBB          SLBB domain


Domain annotation for each model (and alignments):
>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.0   9.4e-51   5.6e-47       1     151 [.      49     222 ..      49     223 .. 0.96

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 9.4e-51
  Complex1_51K   1 vkeagivGrGGagfPthvKlkakakkkk...kylivNaaEcEPgltkDrllmreepheileGlkiaaealgaekgvigvrdekpeaiealekalaea 94 
                   vk +g++GrGGagfPt+vK+ + +++k+    yl++Na+E+EPg++kD++++ ++ph+++eG+ i a+a +a+ ++i++r+e  + +e lekalaea
    CCG91331.1  49 VKISGLRGRGGAGFPTGVKWGFINHEKNtkpVYLLCNADESEPGTFKDKQIIYKDPHQLIEGMVISAYANRAHLAYIYIRGEFAKGAEILEKALAEA 145
                   6789****************999987778889***************************************************************** PP

  Complex1_51K  95 kaagl...........ldievvklagkYpaGeekaLiesltgr.evprgkpp...advgv.....vvnNveTlaavy 151
                   +++++           l+i v ++ag+Y++Gee+ Liesl+g+ ++pr kpp   a  g+     +vnNveTl++v+
    CCG91331.1 146 RERNFlgknilgsgydLEIYVFRGAGAYICGEETGLIESLEGKrAYPRIKPPyfpAVLGLymcptIVNNVETLCHVK 222
                   **999**************************************99*****9987677777**************997 PP

>> NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   1.1     1e-33     6e-30       2      84 ..     355     437 ..     354     438 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 1e-33
                  HHHHHHHHHHHH--S--HHHHIIIIHHHHHHHHHTBT---HHHHHHHHHHHHHHSS--SSTHHHHHHHHHHHHHHHHHHHHHH CS
  NADH_4Fe-4S   2 varrllefyaaesCGkCtpCreGtkrllelleriaagegteedldlleelaetikgtslCalgdsaanpvlsalrkFreefea 84 
                  ++r+++efya+esCG+CtpCreG+ +++++l+ri++g g++ed +ll e+a+ i+g+++Ca+g+++a+pv+s+++ F eef+a
   CCG91331.1 355 CLRNIAEFYAHESCGQCTPCREGSLWMKKMLDRICTGGGRPEDSKLLLEVANHIAGRTICAFGEACAWPVQSFVEMFGEEFDA 437
                  6899*****************************************************************************98 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   6.3e-13   3.8e-09       3      57 ..     247     296 ..     245     297 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 6.3e-13
                 EEESSBSS-EEEEEET.T-BHHHHHHTTT-SBSS.........-E.EEE-SSSSS-- CS
        SLBB   3 tVtGeVkrPgnyevpi.gttlsdlieqaGGltddadlksvnLarl.avipgGpmmgi 57 
                 +V+G+V++Pg ye+p   +t+ +l+++ +G+ ++++       +l avipgG+++ +
  CCG91331.1 247 CVSGDVNKPGYYEYPCgAITFGELLYEICGGIRNGN-------KLkAVIPGGSSAKV 296
                 8**************9568*****************.......**********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3150.63
//
Query:       CCG91332.1  [L=568]
Description: NADH-ubiquinone oxidoreductase chain G [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-18   65.4   0.0    1.1e-10   41.1   0.0    2.2  2  Molybdopterin    Molybdopterin oxidoreductase
    3.3e-17   61.7   0.1    8.7e-17   60.4   0.1    1.8  1  NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur
    1.7e-08   34.4   0.0    1.9e-07   31.0   0.0    2.3  1  Fer2_4           2Fe-2S iron-sulfur cluster binding domain
    1.4e-06   28.2   0.1    3.4e-06   27.0   0.1    1.7  1  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain
    8.5e-05   22.4   0.2    0.00035   20.4   0.0    2.1  2  Fer2             2Fe-2S iron-sulfur cluster binding domain
     0.0048   16.7   3.4       0.47   10.4   0.8    3.0  2  Fer4             4Fe-4S binding domain
  ------ inclusion threshold ------
      0.071   11.9   0.0       0.13   11.1   0.0    1.4  1  GD_AH_C          D-galactarate dehydratase / Altronate hydrol
       0.11   12.5   0.7        1.2    9.3   0.2    2.4  2  KH_5             NusA-like KH domain
       0.11   11.8   0.0       0.34   10.2   0.0    1.7  2  NotI             Restriction endonuclease NotI


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.9e-08   5.9e-05       1      77 [.     313     380 ..     313     406 .. 0.85
   2 !   41.1   0.0   5.6e-14   1.1e-10     326     429 ..     416     515 ..     401     516 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.9e-08
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BE CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfy 77 
                    R++ P        +G + + +W+eAl ++a++l +      p+++a+ +s +l+ +e+l++ kkl++ lg+ +  f 
     CCG91332.1 313 RVTEPASH---L-NGSLFPLEWPEALRTVAQKLME----FSPSEIAFLVSARLT-CEELYLVKKLMETLGKGTEIFS 380
                    56666666...4.89******************99....88889**99999999.**************98665555 PP

  == domain 2  score: 41.1 bits;  conditional E-value: 5.6e-14
                    CGGCHHHHHHTTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEESCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEEEEESSS-STT-BE CS
  Molybdopterin 326 lfversnllkssgkkvlyllgnnpevdhadenevekalekldlvvvldgrltstalyaDiiLPaatwyEkedlytndegrfqhlkqavsppgeaks 421
                    ++ e +n+++ +++k l+ + +npe    +e    + l +l+++v    +    +++a+++L +a++ Ek+++++n  gr q+l++a+ +pg a++
     CCG91332.1 416 RIEELKNKIRAKEIKCLFAIHENPEEVGIQE----DILSSLSFYVWQGLIPGPAVHKANVLLAGASFAEKSGTMINIAGRLQKLHKAILCPGRARE 507
                    4556789999999999999995443222222....2334777777777777********************************************* PP

                    HHHHHHHH CS
  Molybdopterin 422 dwkIlkaL 429
                    dw Il++L
     CCG91332.1 508 DWRILRDL 515
                    ******98 PP

>> NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.1   4.4e-20   8.7e-17       2      40 .]     124     162 ..     123     162 .. 0.93

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 4.4e-20
  NADH-G_4Fe-4S_3   2 ktilellLanHpldCltCdknGnCeLQdlayelgveesr 40 
                       +++e+lL+nHpldC++Cd++G+C LQ++ay++g  +sr
       CCG91332.1 124 EGVMEFLLINHPLDCPICDQAGECRLQEYAYDFGKGRSR 162
                      689*******************************87765 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   9.4e-11   1.9e-07       4      81 ..      21     116 ..      18     117 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 9.4e-11
      Fer2_4   4 vtltfDGkevtvpeGdtvasAllangvdvprsckygrprgelcaggeCrnClVeve.......................gepnvracstpvedGlkvet 79 
                 v++++DG+ v+vp+G  v++++ + g  +p+ c++     +l+  g+Cr Cl e+                         +p + ac t++++G+ ++t
  CCG91332.1  21 VNVQLDGQWVKVPKGLNVIEVAKRFGKFIPHYCYH----PKLSIAGNCRMCLFEMGmpkldanrkpvvdaegmpvinwlPRP-QIACATQATEGMAIRT 114
                 8899*******************************....99**************888899999999999877777653344.78*************9 PP

      Fer2_4  80 qt 81 
                 ++
  CCG91332.1 115 NS 116
                 86 PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   1.7e-09   3.4e-06       3      54 ..     258     309 ..     256     310 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.7e-09
                     EEEEE-SSBTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHTCHHCCC CS
  Molybdop_Fe4S4   3 vvktaCpyCgvgCglevhvkdgkivkvegdpdhpvnegrlCvKGrtllervy 54 
                     ++k++C+ C +gC++ ++++ + +++  +  + +vn   +C  Gr +  +++
      CCG91332.1 258 EAKSICTDCATGCNIIISSRENIVYRLTPRVNEEVNSHWMCDQGRLGFHYIH 309
                     689******************************************9999887 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.8e-07   0.00035       3      52 ..      25      76 ..      23     107 .. 0.70
   2 ?   -1.6   0.3       1.3   2.7e+03      14      41 ..     121     148 ..     113     149 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.8e-07
                TTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSS......SSSSTTEEEEEESCE CS
        Fer2  3 idgkevevevadgettlldaaeenggidipysCgg......ggCgtClvevlegev 52
                +dg++v+v  ++g + + ++a++  g  ip+ C++      g+C++Cl e+   + 
  CCG91332.1 25 LDGQWVKV--PKGLN-VIEVAKRF-GKFIPHYCYHpklsiaGNCRMCLFEMGMPKL 76
                56776666..56899.99999999.9**************777*****99774443 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
                 TTTHBHHHHHHHTTTTTSTTSSSSSS.SS CS
        Fer2  14 dgettlldaaeenggidipysCgggg.Cg 41 
                 d +  +++++  n+ +d p  C ++g C+
  CCG91332.1 121 DCQEGVMEFLLINHPLDCP-ICDQAGeCR 148
                 4555588888888888888.899877797 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.8   0.00023      0.47       2      15 ..     181     194 ..     180     196 .. 0.88
   2 !    5.6   0.1    0.0074        15      15      24 .]     234     243 ..     234     243 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00023
                 EEETTTSSS-THHH CS
        Fer4   2 videekCigCGaCv 15 
                 + d e+Ci C +C+
  CCG91332.1 181 ILDDERCILCSRCI 194
                 689**********8 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0074
                 HHHSTTTEEE CS
        Fer4  15 vevCPvgAIt 24 
                 v++CPvgA+t
  CCG91332.1 234 VDICPVGALT 243
                 799*****86 PP

>> GD_AH_C  D-galactarate dehydratase / Altronate hydrolase, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.4e-05      0.13      70     111 ..     389     430 ..     339     453 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.4e-05
     GD_AH_C  70 llrtLaglakhPNvagvlvlglgcenlqieelaeeikeadek 111
                 +  +L+    +PN  g++ +g+g e ++ieel+++i++++ k
  CCG91332.1 389 ADGLLRSADLNPNTKGAIGIGIGKEGTRIEELKNKIRAKEIK 430
                 5567888899*************************9865443 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2    0.0006       1.2      18      44 ..     405     431 ..     398     442 .. 0.88
   2 ?    0.4   0.0      0.34   6.8e+02      22      38 ..     518     534 ..     517     547 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0006
        KH_5  18 pvGaivgkkGsrikavsseLkgekidv 44 
                 ++G  +gk+G+ri++++++++ + i++
  CCG91332.1 405 AIGIGIGKEGTRIEELKNKIRAKEIKC 431
                 68999****************999987 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.34
        KH_5  22 ivgkkGsrikavsseLk 38 
                 +vg+kG+  +++s+ ++
  CCG91332.1 518 LVGMKGRVFEKISDVFD 534
                 69**********99885 PP

>> NotI  Restriction endonuclease NotI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.9   3.8e+03      62      98 ..      52      89 ..      48      93 .. 0.84
   2 ?   10.2   0.0   0.00017      0.34      51      87 ..     493     529 ..     480     539 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.9
        NotI 62 R.fredkkilddvaklllnegekrsllteerlddaaGk 98
                  ++ +  i+ ++  +l++ g  +  +  ++++da G 
  CCG91332.1 52 YcYHPKLSIAGNCRMCLFEMGMPKLDANRKPVVDAEGM 89
                44888999999999999999999999999999999885 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00017
        NotI  51 knakpvilCPiRfredkkilddvaklllnegekrsll 87 
                 ++ +  ilCP R red++il d + l+  +g +  + 
  CCG91332.1 493 QKLHKAILCPGRAREDWRILRDLLLLVGMKGRVFEKI 529
                 566778****************998887777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3883.99
//
Query:       CCG91333.1  [L=375]
Description: NADH-ubiquinone oxidoreductase chain H [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-119  398.2  24.0   2.7e-119  397.9  24.0    1.0  1  NADHdh    NADH dehydrogenase


Domain annotation for each model (and alignments):
>> NADHdh  NADH dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.9  24.0  1.5e-123  2.7e-119       2     296 ..      15     363 ..      14     366 .. 0.94

  Alignments for each domain:
  == domain 1  score: 397.9 bits;  conditional E-value: 1.5e-123
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-SSTT.......TTTTHHHHHHHHHCCS-----TTS-HHHHHHHHHHHHHHHHCTTTTS-SSS... CS
      NADHdh   2 klllllvvlllvvalltlleRkvlAriqdRlGPnrvGp.......lGllqplaDalKlllKediipkkadkllfllapvlalilallafaviPfge... 90 
                 k+++++ vll +va+++l+eRk++A+iqdR+GPnrvG        +Gl qp+aDa+Kl+lKe+++p  +++++++lap++++++ ll++ +iPf++   
  CCG91333.1  15 KIAVVVGVLLGIVAYTVLAERKICAAIQDRVGPNRVGLpflkgrfWGLGQPIADAFKLMLKEQFVPGVVKRFYYTLAPFFVIVPPLLIIGLIPFASvdp 113
                 78999999*****************************669999999*************************************************4456 PP

                 ..............SSS--TTHHHHHHHHHHHCHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-HHHHHHCCCTT...... CS
      NADHdh  91 ..............vladlnvglllilalsslgvygillaGwasnskYallGalRsaaqmisyEvalglsllavvllagslslseiveaqeei...... 169
                               v+++  +g+l+++a+ssl+vygi+laGwasnskYa+lG++Rs+aqmisyEvalg+s++ v+ll+gsl++s+iv+ q e+      
  CCG91333.1 114 vtisslkivvpqpgVIINAGAGVLWAFAISSLSVYGIVLAGWASNSKYAFLGGIRSTAQMISYEVALGFSVIPVFLLTGSLNFSDIVKFQIEHgwlmip 212
                 777888888888899999999*********************************************************************666666665 PP

                 .......-C....CCCHHHHHHHHHHHHHHCCTCTTBTTTTSTTSSSSCCCTT-HCHHHHHHHHHHHHHHHHHHHHHHHHCT.SS-HCCS......... CS
      NADHdh 170 .......wf....illqllafiifliallaetnraPFDlpeaesELvaGfhtEYsgmkfalfflaeyanmvlvsalavllFlgGwllpfs......... 248
                        w     +++ +++f+ifl+al+aetnraPFDlpe+e+ELvaG++tEY+gmkf++ffl+eya+mv+ sal+++lF+gGw+lpf+         
  CCG91333.1 213 ffaqhldWKlfamWPFLFISFLIFLVALFAETNRAPFDLPESEQELVAGYNTEYGGMKFGMFFLGEYAAMVAASALIITLFFGGWSLPFGlltkgmsig 311
                 55555553277887777********************************************************************************** PP

                 ....HHHHHHHHHHHHHHHHHHHHHC----TCHHHHHHHCCTCHHHHHHHHH CS
      NADHdh 249 ....gllwfllKvllllflfiwiratlpRlRydqlmklgwkvllplalanll 296
                     ++l+fllK+l++lflfiwir+tlpR+Rydqlm+lgwk++lpl+++n+ 
  CCG91333.1 312 alliQALVFLLKILVFLFLFIWIRWTLPRFRYDQLMNLGWKIFLPLSMVNIG 363
                 **************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2703.95
//
Query:       CCG91334.1  [L=605]
Description: Sulfite reductase, alpha subunit (Flavoprotein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-36  123.1   0.0    1.6e-35  122.4   0.0    1.4  1  Flavodoxin_1   Flavodoxin
    1.2e-32  113.3   0.0    2.1e-15   56.9   0.0    2.2  2  FAD_binding_1  FAD binding domain
    5.8e-19   68.7   0.0      1e-18   68.0   0.0    1.4  1  NAD_binding_1  Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.0   2.6e-39   1.6e-35       1     143 []      95     226 ..      95     226 .. 0.94

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 2.6e-39
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   i++gS+tGn+e+lAk+++++l++ +f + v++l+d++ +  ++++e ++++ +sTfg+G+pp+n++ +f++ l       e++ l+++++a+++lGd
    CCG91334.1  95 IFFGSQTGNAEELAKRMGRKLQSVKFPVSVIDLADFKSV--DLTKESYAIFFISTFGEGEPPDNAR-EFWEYLSSS----EAPRLENLQYALLALGD 184
                   8************************************76..***********************99.999999888....799************** PP

                   TTSSSTTHHHHHHHHHHHHTTCEEESSSEEEETTSTHGHHHHHHHH CS
  Flavodoxin_1  98 sayenFcaagkkldekleelGaerllkllegdednqegqeeafrkW 143
                   say+ Fc+agk +d++leelGa+r+ +   +d     ++ee+ +kW
    CCG91334.1 185 SAYPDFCQAGKNVDKRLEELGAKRIYPRIDCDV----DYEESASKW 226
                   ***************************666665....568888887 PP

>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   2.3e-18   1.4e-14       1      70 [.     273     342 ..     273     352 .. 0.94
   2 !   56.9   0.0   3.5e-19   2.1e-15     150     222 .]     361     431 ..     347     431 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 2.3e-18
                    S--BTTB-EEEEEEEEEE---.-SS--EEEEEEE-TTBT----TT-EEEE-----HHHHHHHHHHHT--T CS
  FAD_binding_1   1 rpfdakkvflakvlknreLtkpesernvihveldisdsglkYetGdhlgvypsNneelVeellellgldp 70 
                    +pf+++++f+++vl+nr+Lt  +se+++ h+el++++s+l Y +Gd++gv+p N + lV+e++e lg   
     CCG91334.1 273 PPFNKQNPFPSRVLENRRLTLMGSEKETRHLELSLEGSDLSYLPGDAVGVFPTNWPVLVQEIIETLGYTG 342
                    599**************************************************************99765 PP

  == domain 2  score: 56.9 bits;  conditional E-value: 3.5e-19
                    -HHHHHHHHHTT---TTS-HHHHHHHS-B---EEEEB-S-TTTTTTEEEEEEE--EE---SSS--EE-HHHHH CS
  FAD_binding_1 150 neartllevleefpsvklplefLlevlpqLkpRyYSiSssskvhpdevhltvvVveyetdgegrirkGvcsny 222
                     + + +  +l++fp   + + +L+++l  L pRyYSi+ s+k ++ evhltvvVv y +  +gr r G+csn+
     CCG91334.1 361 YRHYEINSILDDFPKKGIGALELVKNLRSLSPRYYSIACSPKLYEMEVHLTVVVVRYIQ--HGRWRRGICSNF 431
                    56678899*************************************************96..**********97 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   1.7e-22     1e-18       1     108 [.     463     569 ..     463     570 .. 0.85

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 1.7e-22
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH...HSSTT CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrtee.dllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells...lkkee 92 
                    mi++GtGiaP+r++l+++++  + k+k +l++G +++  d++y+eele +   ++g l  ++  +   ++++  k +vq+++le++ +     +e+
     CCG91334.1 463 MIGPGTGIAPFRAFLQERMAI-EAKGKNWLFFGEQHRStDFFYQEELEDF--LKKGVL--TRL-DTAFSRDQSYKIYVQHRMLENAQDfwgWLQEG 552
                    9*******************8.999*********99988***********..444522..222.33334444568***************977*** PP

                    EEEEEEC.SHHHHHHHH CS
  NAD_binding_1  93 thvyvCG.ppgMikavr 108
                    + vyvCG + +M+k+v+
     CCG91334.1 553 AYVYVCGdAHRMAKDVD 569
                    **************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4202.45
//
Query:       CCG91335.1  [L=70]
Description: hypothetical protein MFUM_1020059 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 579.72
//
Query:       CCG91336.1  [L=278]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-07   32.1   0.1      4e-07   30.5   0.1    1.7  1  YkuD      L,D-transpeptidase catalytic domain
      0.005   16.8   0.1       0.01   15.8   0.1    1.5  1  OppC_N    N-terminal TM domain of oligopeptide transport perm


Domain annotation for each model (and alignments):
>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.1   4.5e-11     4e-07      29     143 ..      99     240 ..      78     244 .. 0.68

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 4.5e-11
                 BEB.TTS.TTSE---EEEEEC.............................EEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTT............ CS
        YkuD  29 svG.gkkegdreTPlGtfrik.............................skvrnptwnvppsiarkeiypklrkdpeyldkknskv............ 85 
                  vG +kkegd +TP G f ++                                                                 +            
  CCG91336.1  99 QVGeQKKEGDGKTPAGIFNLGlimgvaeelplgaswplyhkkspldawieD-----------------------------------Ptlshynhlvtis 162
                 46687888999**********666655544444444444444444433331...................................1333334444556 PP

                 ...........................CECCCCEEE-STTS-EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTT.EE CS
        YkuD  86 ...........................algkvkfvfpngsgiyiHgtgapdlfergkgarrShGCirlseedakelyelvlvg.tp 143
                                             +++  ++ ++gs++++H    ++          ++GC+++++e++ el +++  + +p
  CCG91336.1 163 eassppiwfekqrlriedphlewmvfiEHNYPDAIPGFGSAVFLH--ERYGE------HTPTSGCVAMEKERLIELIRWISYNaKP 240
                 666666666666666666666777*********************..55533......355******************9977444 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   1.1e-06      0.01      13      36 ..       6      29 ..       3      46 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.1e-06
      OppC_N 13 NklAvvglvilllllliaifaPli 36
                Nk+ +v+l+i lll+l+++f  ++
  CCG91336.1  6 NKTLFVSLFICLLLVLFSLFLLYF 29
                9*******************8777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2129.69
//
Query:       CCG91337.1  [L=445]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.13   12.3   0.1       0.13   12.3   0.1    2.5  2  FlxA            FlxA-like protein
       0.26   11.0   4.5        0.4   10.4   4.5    1.3  1  Pex19           Pex19 protein family
          1    9.5  33.0        3.7    7.7   4.8    2.6  2  Keratin_2_head  Keratin type II head


Domain annotation for each model (and alignments):
>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8   6.0         3   1.8e+04      11      28 ..      86     103 ..      27     110 .. 0.58
   2 ?   12.3   0.1   2.2e-05      0.13      35      87 ..     130     178 ..     120     189 .. 0.79

  Alignments for each domain:
  == domain 1  score: -4.8 bits;  conditional E-value: 3
        FlxA  11 sssgsasqiasLqkQikn 28 
                 +s + a+ i++  +Qik+
  CCG91337.1  86 NSRNYAQSIRRTIEQIKS 103
                 223333333333333333 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.2e-05
        FlxA  35 elsesdeltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsekeek 87 
                 +l++    +++   + +q ++aQI ++q+ I q  + ++++++e++ s ++++
  CCG91337.1 130 QLAS----SADGADQFAQFVEAQIPMVQKAISQGRRGENSNKEESNRSDNNAS 178
                 4444....45555589******************9999999999998887765 PP

>> Pex19  Pex19 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.5   6.7e-05       0.4      42     122 ..      44     139 ..      17     179 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.7e-05
       Pex19  42 e....................aaeaaaeaksaeasssaaes.......kaeeesfqdiikkTlerLkesgdkvdaaaeseeknsddllaqlLkqLeaga 113
                 +                    + +++++a++a        +       +a++ ++ + i++T+e++k+ ++++ +++    + ++d+l  + ++L++++
  CCG91337.1  44 SglstlpsdseqqgrmsqvqgLLADPSHASEA--------TimqlqmaAANSRNYAQSIRRTIEQIKSKQNEIASRL----HINPDDLITVPQALKLEQ 130
                 22222333322222222111122222222222........1333333357899************************....555555555555555554 PP

       Pex19 114 dvegeggee 122
                  +++ +g +
  CCG91337.1 131 LASSADGAD 139
                 444444433 PP

>> Keratin_2_head  Keratin type II head
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.8   0.00062       3.7      84     116 ..     229     258 ..     225     289 .. 0.73
   2 ?    7.2  20.3   0.00086       5.1       1     117 [.     325     443 ..     311     445 .] 0.58

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00062
  Keratin_2_head  84 glGfggGvglgfgagggvGggfGgggglvGggg 116
                     g+G g+G+glgf  ggg G+g+G g  ++  +g
      CCG91337.1 229 GWGWGAGIGLGF-WGGGWGLGIGIGYPFI--PG 258
                     678888888999.8999999999887553..22 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00086
  Keratin_2_head   1 gFSsasavvs..srsrssassvssarsgggaggggvgagagagggFgSrSlynlGGsksisisvagggsrag.sgfgf..gggggggfglGfggG 90 
                     +FS++s   s    +++ ++ +ss  ++gg   g + ++ +  ++ +S     lGGs+      +++ ++++  g g     gg    g+  g G
      CCG91337.1 325 NFSAQSYGASphTFTQRAINPRSSLLGHGG---GTSFNSPAVHSSPSSMANARLGGSQFHQGLPTRNWASPAmRGYGHapFYGGARFHGYPGGRG 416
                     577777666322333334444443333333...33333455556666666677999876544333333333323433300333333334456667 PP

  Keratin_2_head  91 vglgfgagggvGggfGgggglvGgggf 117
                     v +gf++gg  Gggf gggg++Ggggf
      CCG91337.1 417 VPGGFHGGGPHGGGFHGGGGFHGGGGF 443
                     778999999999***999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3086.05
//
Query:       CCG91338.1  [L=246]
Description: hypothetical protein MFUM_1020062 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.23   11.7   1.7       0.58   10.4   1.7    1.7  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.7   3.2e-05      0.58      37     114 ..     128     208 ..      67     222 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.2e-05
                      HHHHHCHH..TTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEE...SS-BCGCCSCHCCSHH CS
  Sacchrp_dh_NADP  37 lealaaka..lgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCietgvhyvd...tsiskeertnyalrea 114
                       +++ a+   ++ +++ ++  a+ +++ L++  ++ d+v  ++ + ++  +lkaC+e g   +     +i k e++  + +++
       CCG91338.1 128 KQKISATSekAKATISEAKKKAQSKKQ-LKSSSSKEDFVKAALFSPLTKHILKACMELGRTLLKennSVI-KTEDQKNRFEKK 208
                      334444442245555555556666666.99999999***********************99998553333.444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3073  (0.171398); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 1632.16
//
Query:       CCG91339.1  [L=311]
Description: tRNA dimethylallyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-53  180.9   0.0    3.8e-53  180.6   0.0    1.1  1  IPPT      IPP transferase
      1e-09   38.2   0.3    2.3e-08   33.7   0.0    2.7  3  IPT       Isopentenyl transferase
    0.00025   21.2   0.1    0.00082   19.6   0.0    1.9  3  AAA_33    AAA domain
     0.0025   18.3   0.0     0.0052   17.2   0.0    1.6  1  AAA       ATPase family associated with various cellular acti
  ------ inclusion threshold ------
      0.034   14.1   0.5        1.4    9.0   0.2    2.7  2  TsaE      Threonylcarbamoyl adenosine biosynthesis protein Ts
      0.037   14.6   0.2        5.2    7.6   0.0    2.8  3  AAA_18    AAA domain
       0.14   12.4   0.1       0.35   11.1   0.0    1.8  2  AAA_28    AAA domain


Domain annotation for each model (and alignments):
>> IPPT  IPP transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.6   0.0   1.5e-56   3.8e-53       1     225 [.      41     281 ..      41     284 .. 0.92

  Alignments for each domain:
  == domain 1  score: 180.6 bits;  conditional E-value: 1.5e-56
                 TTBTT-HTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTG-S--B--HHHHHHHHHHHHHSHHH CS
        IPPT   1 qvYrgmdIgTakptaeeragvphhlidildpdeeysvadFqkdalkaieeilargkipilvGGTglYikallegldelpeadeelraeleeeaeeegle 99 
                 qvY+++dIgTakp+ +er ++++  id++d++e+++v  F + a++ +++ l++++ +++vGG+glY++a+++gl   p+ad+ lr++le+     + +
  CCG91339.1  41 QVYKKLDIGTAKPSLHERIRYRYGGIDLVDWKESFNVFLFIQWAKEYLSKELQQNRAILVVGGCGLYFRAMTRGLCAAPAADALLRKSLEKL----DRK 135
                 9************************************************99***********************9557999999*****993....356 PP

                 HHHHHHHHC-HHHHTTS-TT-HHHHHHHHHHHHHHSS-HH............ECEEEEEECSHHHHHHHHHHHHHHHHHTTHHHHHHHHHH.......C CS
        IPPT 100 alheelkevdpeaaakihpndrqRiiRalevyeetgkpls............ellviglesdreelyeridkRvdemleaGlleEveklla.......k 179
                 +l e l ++dp aa+ i+ ++++R+iRa+ev + +g ++             ++l +++++++ el+ r+ +R+++m+eaG+ +E+  ll+       +
  CCG91339.1 136 KLIELLIQIDPLAASAIDCSNPRRVIRAIEVKKCSGISIIewqkkttfplvvPALAFWIDRPKPELEIRLRNRIQSMFEAGWEKETCMLLEeggigaiE 234
                 7******************************98888655567787777777756*****99*****************************988887765 PP

                 CCCSTTSHHHHHHHTTSS.-HHHHHHHHHHHHHHHHHHHHHHHHTTC CS
        IPPT 180 alqaigykelleylegel.sleeaieklkaatrqyaKrQltWfrkkk 225
                 ++qaigy+++ +yl ++  +  +++e++ +++ +y KrQ tWf++++
  CCG91339.1 235 SCQAIGYRQIGQYLLQKEkNKVKLMEDILKEHCAYGKRQKTWFKREN 281
                 7************9876536889********************9885 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0     9e-12   2.3e-08       3      51 ..       8      56 ..       6      62 .. 0.93
   2 ?   -2.0   0.0      0.72   1.8e+03     206     225 ..      82     101 ..      69     105 .. 0.82
   3 ?    1.1   0.1     0.083   2.1e+02     196     224 ..     251     279 ..     232     285 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 9e-12
         IPT  3 vylifGatttGKtaeaiklaketgapvivlDRvqcyselavgsGrplee 51
                ++ ++Gat+tGKta a ++a++tg++++++D +q y++l +g+ +p+ +
  CCG91339.1  8 IFFLVGATSTGKTAIAHRIAEATGVSLLSIDSMQVYKKLDIGTAKPSLH 56
                6789***************************************999755 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.72
         IPT 206 giaeeylehallqeqefplv 225
                 + a+eyl   l+q++ ++ v
  CCG91339.1  82 QWAKEYLSKELQQNRAILVV 101
                 56999999999999998876 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.083
         IPT 196 dadqeeeliegiaeeylehallqeqefpl 224
                 + + + +l+e i +e+ +++++q+  f +
  CCG91339.1 251 KEKNKVKLMEDILKEHCAYGKRQKTWFKR 279
                 34677899***************988876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.2e-07   0.00082       2      78 ..       9     103 ..       8     163 .. 0.73
   2 ?   -3.3   0.0       3.5   8.9e+03      97     119 ..     187     209 ..     185     216 .. 0.78
   3 ?   -2.4   0.0       1.9   4.8e+03      25      56 ..     255     284 ..     246     295 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.2e-07
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdt...............lrrrlfg.tdqqsktdytr..vldrlyqilnelarkalsagrnvildat 78 
                 ++lvG+  +GK+  a+r+++++g+ lls d+               l++r+++  +  ++ d+++    + ++q+ +e++ k l+++r++++  +
  CCG91339.1   9 FFLVGATSTGKTAIAHRIAEATGVSLLSIDSmqvykkldigtakpsLHERIRYrYGGIDLVDWKEsfNVFLFIQWAKEYLSKELQQNRAILVVGG 103
                 689***************************98876666666666665555555433334445555334567999************999999877 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.5
      AAA_33  97 vpvrivvvetdeetlkeRlakRa 119
                 vp ++ +++ +  +l+ Rl+ R 
  CCG91339.1 187 VPALAFWIDRPKPELEIRLRNRI 209
                 67778888888888888888885 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.9
      AAA_33  25 avllssdtlrrrlfgtdqqsktdytrvldrly 56 
                  v l +d+l++ +++ ++++kt+ +r  ++l 
  CCG91339.1 255 KVKLMEDILKEHCAY-GKRQKTWFKRE-NSLS 284
                 555677776666665.44455665553.3333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     2e-06    0.0052       2      37 ..      10      45 ..       9      90 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2e-06
                EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS CS
         AAA  2 llyGppGtGKTllakavakelgvefleisgsellsk 37
                 l+G   tGKT++a+ +a+ +gv++l+i+ +++ +k
  CCG91339.1 10 FLVGATSTGKTAIAHRIAEATGVSLLSIDSMQVYKK 45
                5899*************************9999866 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2   0.00053       1.4      21      50 ..       8      39 ..       1     100 [. 0.79
   2 ?    2.5   0.0     0.055   1.4e+02      92     106 ..     170     184 ..     157     209 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00053
                EEEEEESTTSSHHHHHHHHHHHTT--..---- CS
        TsaE 21 vilLeGdLGaGKTtlvrglakalgve..evkS 50
                +++L G   +GKT++++ +a+a gv+  ++ S
  CCG91339.1  8 IFFLVGATSTGKTAIAHRIAEATGVSllSIDS 39
                6899********************98666666 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.055
                 SCEEEEETGGGGCCC CS
        TsaE  92 eavvlvEWpekleel 106
                 +++ ++EW++k++  
  CCG91339.1 170 SGISIIEWQKKTTFP 184
                 379*******95333 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0     0.002       5.2       2      36 ..      10      47 ..      10      61 .. 0.82
   2 ?    3.3   0.0     0.044   1.1e+02      24     116 ..      98     211 ..      84     225 .. 0.70
   3 ?   -0.6   0.0      0.71   1.8e+03      15      50 ..     245     281 ..     235     296 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.002
      AAA_18  2 lltGtpGvGKttlakeLskrlgf...gvnlrdvakeng 36
                +l G+  +GKt +a+++++ +g+   ++ +++v k+ +
  CCG91339.1 10 FLVGATSTGKTAIAHRIAEATGVsllSIDSMQVYKKLD 47
                58999***************977777777776666655 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.044
      AAA_18  24 f....gvnlrdvakenglllevdpe..aldeskrldedkldklldaleenss...............aleegknl.vidghlaeleseaakdikkvvLt 100
                 +    g  l + a  +gl+    ++    ++ ++ld++kl +ll +++  ++                  +++ + +i+++    ++     +  ++++
  CCG91339.1  98 IlvvgGCGLYFRAMTRGLCAAPAADalLRKSLEKLDRKKLIELLIQIDPLAAsaidcsnprrviraiEVKKCSGIsIIEWQKKTTFPLVVPALA-FWID 195
                 2666666666666666777776666655566667777776666666666666888888888888888667777777999999888888888888.9999 PP

      AAA_18 101 aspeelleRlekRgye 116
                  ++ el  Rl++R ++
  CCG91339.1 196 RPKPELEIRLRNRIQS 211
                 9********9999866 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.71
      AAA_18  15 akeLskrlgfgvnlrdvakenglllevdpe.aldesk 50 
                 +++L +++++ v+l++ + ++++ ++  ++ ++++++
  CCG91339.1 245 GQYLLQKEKNKVKLMEDILKEHCAYGKRQKtWFKREN 281
                 5566444445666666666666666666665666655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.35       3      25 ..      10      33 ..       8      61 .. 0.87
   2 ?   -3.8   0.0       5.2   1.3e+04     124     146 ..     195     218 ..     184     226 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
      AAA_28  3 vitGgestGKTtlleaLaar.gyp 25
                 ++G+ stGKT ++ ++a+  g++
  CCG91339.1 10 FLVGATSTGKTAIAHRIAEAtGVS 33
                589***************755776 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.2
      AAA_28 124 dgeRre.dleereaiderlrealr 146
                 d   +e + + r++i+ ++++ ++
  CCG91339.1 195 DRPKPElEIRLRNRIQSMFEAGWE 218
                 444444345667777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2193.79
//
Query:       CCG91340.1  [L=441]
Description: putative GTPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-35  119.4   4.8    1.8e-34  118.2   4.8    1.7  1  GTP-bdg_M        GTP-binding GTPase Middle Region
      2e-30  105.3   0.2    1.8e-29  102.2   0.0    2.3  2  GTP-bdg_N        GTP-binding GTPase N-terminal
    1.3e-23   83.2   0.0    3.1e-23   82.0   0.0    1.7  1  MMR_HSR1         50S ribosome-binding GTPase
    5.5e-09   35.7   0.0      1e-08   34.8   0.0    1.5  1  FeoB_N           Ferrous iron transport protein B
    7.6e-06   26.1   0.2      0.081   13.0   0.1    2.5  2  Dynamin_N        Dynamin family
    0.00012   22.0   0.2       0.18   11.7   0.0    2.6  3  RsgA_GTPase      RsgA GTPase
     0.0006   19.8   0.2     0.0017   18.4   0.0    1.8  1  MMR_HSR1_Xtn     C-terminal region of MMR_HSR1 domain
    0.00072   19.1   0.0       0.16   11.5   0.0    2.9  2  GTP_EFTU         Elongation factor Tu GTP binding domain
     0.0058   16.2   1.0       0.14   11.7   0.0    2.5  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
  ------ inclusion threshold ------
       0.05   13.0   0.0       0.05   13.0   0.0    1.9  3  SRPRB            Signal recognition particle receptor beta su
       0.12   12.9   0.2       0.54   10.8   0.1    2.2  2  ABC_tran         ABC transporter
       0.19   12.0   0.1         11    6.3   0.0    2.5  2  Roc              Ras of Complex, Roc, domain of DAPkinase
       0.27   10.7   2.6        1.2    8.6   0.5    2.6  2  Arf              ADP-ribosylation factor family
        1.2    9.6   3.5         30    5.0   0.0    2.8  3  PIN_12           PIN domain
        1.3    9.4   5.7         49    4.3   0.0    3.5  3  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm


Domain annotation for each model (and alignments):
>> GTP-bdg_M  GTP-binding GTPase Middle Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   4.8   1.5e-37   1.8e-34       1      79 []     116     194 ..     116     194 .. 0.99

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 1.5e-37
                 H--SHHHHHHHHHHHHHHHHHHHCXXXXXXXXX..X..XXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHH.....T CS
   GTP-bdg_M   1 rArtkeaklQVelAqlkyllprLeglgkelsrqgGgigtrGpGetkleldrrlireriaklkkeLekvkkkrelqrkkR 79 
                 rA+t+e+klQ+elAql yllprL++l+++lsrq+GgigtrGpGet+le+drr+i+e+i++lkkeLe+vkk+r  qr+ R
  CCG91340.1 116 RAKTREGKLQIELAQLLYLLPRLTRLWTHLSRQTGGIGTRGPGETQLEVDRRRIQEKIHRLKKELEEVKKTRFIQRSCR 194
                 9***************************************************************************976 PP

>> GTP-bdg_N  GTP-binding GTPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.0   1.5e-32   1.8e-29       1      89 []      26     114 ..      26     114 .. 0.98
   2 ?    0.4   0.1      0.91   1.1e+03      52      74 ..     283     305 ..     265     324 .. 0.60

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 1.5e-32
   GTP-bdg_N   1 eesleEleeLaktaglevvgevvqkrekpdpatyiGkGkveeikelveeeeadlvifddeLspsqqrnLekelevkViDRtqLILdIFA 89 
                 ee  eEleeLa +ag  +++++vq++++p + +yiGkGk++ei+e+++e++++ v+f+d+Lsp q rnL++ +++kV+DRtqLILdIFA
  CCG91340.1  26 EEAFEELEELAISAGGCIIERIVQRLSSPTAPFYIGKGKAKEIAEICKEKKVSFVLFNDDLSPIQCRNLSSLFGCKVLDRTQLILDIFA 114
                 5789************************************************************************************8 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.91
   GTP-bdg_N  52 adlvifddeLspsqqrnLekele 74 
                 ++lv + + Ls +q+++++k le
  CCG91340.1 283 IHLVDISHPLSENQIEEVNKVLE 305
                 45555677788888877777664 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   2.6e-26   3.1e-23       2     114 .]     202     320 ..     201     320 .. 0.79

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 2.6e-26
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSS..HHHHHHHHHHHHHHHHCTSEEEEEEETT....TTCSHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg.keielvDtpGlie..gaseekglgkaflaleeadlillvvdas....eeklkpl 93 
                 +++vG++N+GKStL+n lt++k+ v++k ++T+d++ + ++ +g ++i l Dt+G+i+    +  ++++ ++++++eadl++++vd+s    e    ++
  CCG91340.1 202 ACLVGYTNAGKSTLFNLLTNSKVLVENKLFATLDPTIRLFEASGgQKIFLSDTVGFIQklPFHLVESFKATLEEVKEADLLIHLVDIShplsE----NQ 296
                 689*************************************97777**********9872222333355555556888***********65533....33 PP

                 HHHHHHHHHH...TTSEEEEEEES CS
    MMR_HSR1  94 deeleellee...akkplilvlnk 114
                  ee++++le+    +kp+ilv nk
  CCG91340.1 297 IEEVNKVLEQlgaLDKPTILVWNK 320
                 455555555555599*******98 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   8.7e-12     1e-08       3     153 ..     202     355 ..     200     358 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 8.7e-12
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT.EEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGG......GHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg.keveivDlPGiYslsayseeekvardflleeepdvvvnvvdat......nlern 94 
                  +lvG  n+Gk+tlfn lt++k  v N    t + +   ++ +g +++ + D  G  +  ++   e+   ++   +e+d+++++vd +      ++e  
  CCG91340.1 202 ACLVGYTNAGKSTLFNLLTNSKVLVENKLFATLDPTIRLFEASGgQKIFLSDTVGFIQKLPFHLVESFKATLEEVKEADLLIHLVDIShplsenQIEEV 300
                 689**************************************9888************9999*99999999999999**********7522222246666 PP

                 HHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH CS
      FeoB_N  95 LyLtlqllelgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieell 153
                   ++ ql  l++p++l+ n+id ++++g+   +++++e  g   v++sa+++eg+e+ll
  CCG91340.1 301 NKVLEQLGALDKPTILVWNKIDLVKSNGLI--KRRIQEYPGS--VPISAATGEGCEKLL 355
                 778999999*****************9963..5566666554..778888888888876 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   6.8e-05     0.081       3      36 ..     204     237 ..     203     242 .. 0.91
   2 !   10.6   0.0   0.00037      0.44     101     167 ..     247     320 ..     241     321 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.8e-05
                 EEEBTTTTHHHHHHHHHTS--S---SSS---S-E CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlgedilprgpnptTrrpl 36 
                 +vG +++GKS++ n L+ +++l+  +   T  p+
  CCG91340.1 204 LVGYTNAGKSTLFNLLTNSKVLVENKLFATLDPT 237
                 79*********************99998887776 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00037
                 -SEEEEE---B-SSSGTTS....HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTT...EEEEEE- CS
   Dynamin_N 101 kgltlvDlPGldsvnkrdq....elvkeyikkadiilavtsanhdlsnsealflarevdpkgkr...tivvltk 167
                 +++ l D+ G+++    +     + + e +k+ad+++++++ +h ls+++ +++++ +++ g     ti v +k
  CCG91340.1 247 QKIFLSDTVGFIQKLPFHLvesfKATLEEVKEADLLIHLVDISHPLSENQIEEVNKVLEQLGALdkpTILVWNK 320
                 677888999999988888788889999**********************9999999888888777779999988 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.5   5.4e+03      39      70 ..       4      34 ..       3      44 .. 0.76
   2 !   11.7   0.0   0.00015      0.18      94     124 ..     194     224 ..     159     235 .. 0.68
   3 !    7.6   0.0    0.0028       3.4      30      96 ..     295     357 ..     269     369 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.5
                 HHHHHHTT-EEEEEEE-GGG--HHHHHHHHHH CS
  RsgA_GTPase 39 LvlaeekgiepvivlnKiDlleeeeeleelke 70
                 Lv+ e+k+i +++ l K +   ee  +eel+e
   CCG91340.1  4 LVEEEKKEIGILVGLDKGEKNFEEA-FEELEE 34
                 7888999999999999998888877.555554 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00015
                  HHHCTTSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  94 kellkdktsvlvGqSGvGKStLinallpele 124
                  +++ +  t++lvG + +GKStL n l++++ 
   CCG91340.1 194 RQKSSWPTACLVGYTNAGKSTLFNLLTNSKV 224
                  3444446889****************98765 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0028
                  --HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHH CS
  RsgA_GTPase  30 lslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkel 96 
                   + + ++++L ++ + + + ++v nKiDl++++  +++  +e+       + +sa t+eg+e+l  +
   CCG91340.1 295 NQIEEVNKVLEQLGALDKPTILVWNKIDLVKSNGLIKRRIQEYPGS----VPISAATGEGCEKLLLK 357
                  44566889999999999999************99777777777655....45555566666655443 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.4e-06    0.0017      43     100 ..     298     358 ..     270     363 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.4e-06
  MMR_HSR1_Xtn  43 Ddlidvieg.nrvYipclyvlNKiDlisleel..delarepnsvviSaekelnldeLkeki 100
                   +++  v+e+     +p+++v NKiDl++ + l  +++++ p sv+iSa+++ + ++L+ ki
    CCG91340.1 298 EEVNKVLEQlGALDKPTILVWNKIDLVKSNGLikRRIQEYPGSVPISAATGEGCEKLLLKI 358
                   5555555553445579**********999877224566669****************9887 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.024        29       6      25 ..     202     221 ..     162     233 .. 0.83
   2 !   11.5   0.0   0.00013      0.16      91     138 ..     276     327 ..     267     364 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.024
                 EEEEESTTSSHHHHHHHHHH CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLly 25 
                  +++g +++GK+TL   L+ 
  CCG91340.1 202 ACLVGYTNAGKSTLFNLLTN 221
                 57788899999999887765 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00013
                 HHT-SEEEEEEETTTB.STHHHHHH...HHHHHHTTTEEEEEEESCGSTHHH CS
    GTP_EFTU  91 lrvlDgavlvvdaveG.vepqteev...lrlalkegvpiivfiNKmDrlkae 138
                 ++ +D+ + +vd+++   e+q eev   l+++ +++ p+i++ NK+D +k++
  CCG91340.1 276 VKEADLLIHLVDISHPlSENQIEEVnkvLEQLGALDKPTILVWNKIDLVKSN 327
                 67899999999999774456666651115556666677**********9443 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.072        86       2      22 ..     201     221 ..     200     233 .. 0.83
   2 !   11.7   0.0   0.00012      0.14      90     163 ..     254     334 ..     233     345 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.072
                 EEEEEESTTCCHHHHHHHHHC CS
        cobW   2 vtvltGflGsGKTtLlnhlle 22 
                 +  l+G+  +GK+tL n l++
  CCG91340.1 201 TACLVGYTNAGKSTLFNLLTN 221
                 66899**********998775 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00012
                 ECTTTTHHHH.HTT..SHHHHHCCCECEEEEEEETTTH..CCHCCHHHHHHHHHHTSS...EEEEE-HHHHCHC..HHHHH CS
        cobW  90 ttGlaePapv.aft..eeelksdltldavvavvDaknl.eaeeekieekaedqlaaad...llvlnKtDlldeeallekle 163
                 t+G  +  p  +++  + +l++  ++d ++ +vD ++  ++++ ++ +k+ +ql a d   +lv nK+Dl++++ l+++  
  CCG91340.1 254 TVGFIQKLPFhLVEsfKATLEEVKEADLLIHLVDISHPlSENQIEEVNKVLEQLGALDkptILVWNKIDLVKSNGLIKRRI 334
                 566444444432334688999999***********998644455555666666655443339**********996655443 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         6   7.2e+03     139     154 ..      66      81 ..      59      89 .. 0.75
   2 ?   -3.8   0.5       6.4   7.6e+03     136     148 ..     175     187 ..     167     191 .. 0.76
   3 ?   13.0   0.0   4.2e-05      0.05       4      96 ..     200     301 ..     197     333 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6
                 HHHHHHHHCHHHHHH- CS
       SRPRB 139 kElnkiierrskalke 154
                 kE+ +i + ++ +   
  CCG91340.1  66 KEIAEICKEKKVSFVL 81 
                 8899999888877655 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.4
                 HHHHHHHHHHHCH CS
       SRPRB 136 aLEkElnkiierr 148
                  L kEl+++ ++r
  CCG91340.1 175 RLKKELEEVKKTR 187
                 5889999999887 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 4.2e-05
                 -EEEEE-STTSSHHHHHHHHHHS...S---B---SS-EEETTG...GGTT-SEEEETT-.GCCSHHHHHHHHHH....GGEEEEEEEEETT..S-HHHH CS
       SRPRB   4 pavllvGlsdsGKTslftrLttd...svkktvtSqessaalkvksekgskltliDfPGh.eklrqklleklkak....sslkglvfvvDSt..idpkev 92 
                 p+  lvG +++GK +lf++Lt+      +k  + +++++ l ++++ g+k+ l D  G  +kl  +l+e++ka     +++  l+++vD +    + ++
  CCG91340.1 200 PTACLVGYTNAGKSTLFNLLTNSkvlVENKLFATLDPTIRL-FEASGGQKIFLSDTVGFiQKLPFHLVESFKATleevKEADLLIHLVDIShpLSENQI 297
                 67889****************99442223333444666554.457889999999999964788888888776541111335568888885522344444 PP

                 HHHH CS
       SRPRB  93 kevA 96 
                 +ev 
  CCG91340.1 298 EEVN 301
                 4444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.6   1.9e+03      28      66 ..     110     154 ..     108     200 .. 0.46
   2 ?   10.8   0.1   0.00045      0.54      14      41 ..     202     229 ..     195     323 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.6
                 HHHHTTSS--SEEEEEETTCEGGG......B-HHHCCHCEEEE-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxx RF
    ABC_tran  28 lkllagllkpteGeilldgkdlke......qeleslrkeigvlpq 66 
                 l ++a+  k  eG+++++ ++l +      + +++l+++ g +  
  CCG91340.1 110 LDIFAQRAKTREGKLQIELAQLLYllprltRLWTHLSRQTGGIGT 154
                 566667777777777666665555444444333333333333333 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00045
                 EEEEESTTSSHHHHHHHHTTSS--SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkpteGe 41 
                   +vG + aGKStL++ll++     e +
  CCG91340.1 202 ACLVGYTNAGKSTLFNLLTNSKVLVENK 229
                 579***************9876655555 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0091        11       3      26 ..     203     226 ..     201     255 .. 0.85
   2 ?    3.1   0.0     0.086     1e+02      79     120 .]     278     323 ..     265     323 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0091
                 EEESSTTSSHHHHHHCHCT-CCC- CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfse 26 
                 +lvG +++GK++l++ ++++k+  
  CCG91340.1 203 CLVGYTNAGKSTLFNLLTNSKVLV 226
                 79*************999988754 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.086
                 TSCEEEEEEE.GH..HHHCHHHHHHHHHHHCS.SS-EEEEEE-TTT CS
         Roc  79 eaalailvyd.sr..ssenlkeWlkelkkvag.kspvilvgnkiDl 120
                 ea+l+i ++d s+  s+++++e  k l++ +  ++p ilv nkiDl
  CCG91340.1 278 EADLLIHLVDiSHplSENQIEEVNKVLEQLGAlDKPTILVWNKIDL 323
                 56677777774223245566666666777755478*********95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       6.4   7.7e+03      11      26 ..       8      22 ..       3      24 .. 0.61
   2 ?    8.6   0.5   0.00098       1.2      19     130 ..     204     326 ..     189     338 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6.4
                .TTEEEEEEEESTTSS CS
         Arf 11 kkkelrilllGLDnaG 26
                +kke+ i l+GLD+  
  CCG91340.1  8 EKKEIGI-LVGLDKGE 22
                3555555.57999865 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00098
                 EEESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEEEE.TTEEEEEEEE-S.SGGG....GGGGGGGC...TTESEEEEEEETT-CTTHHHHHHHHH CS
         Arf  19 llGLDnaGKtTilkklkleelvt...tvPTigfnveelei.knlkftvwDvGG.qekl....RplWknYf...ektdavifvvDsadreRleeakeeLk 105
                 l+G  naGK+T+ + l++ ++        T+ ++++  e   + k+ + D  G  +kl     + +k  +   ++ d +i++vD ++    e+  ee++
  CCG91340.1 204 LVGYTNAGKSTLFNLLTNSKVLVenkLFATLDPTIRLFEAsGGQKIFLSDTVGfIQKLpfhlVESFKATLeevKEADLLIHLVDISHPL-SENQIEEVN 301
                 78999999999999999888643334778999999888763456777777555144441111333444431114457899999988754.344557778 PP

                 HHCTSGCCTTSEEEEEEE-TTSTTS CS
         Arf 106 alleeeelkevallvlaNKqDlpea 130
                 ++le+    + + +++ NK+Dl ++
  CCG91340.1 302 KVLEQLGALDKPTILVWNKIDLVKS 326
                 8887777777777778899999875 PP

>> PIN_12  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.034        41      97     141 ..      22      67 ..       4      79 .. 0.74
   2 ?   -2.6   0.3       5.5   6.6e+03      50      71 ..     170     185 ..     161     198 .. 0.41
   3 ?    5.0   0.0     0.025        30      65     113 ..     263     313 ..     250     333 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.034
      PIN_12  97 eeslkkllekleaikvipetndevkkilerafkkkpPf..skkkkkg 141
                 e+++++ +e+le    i++   ++++i++r  +  +Pf   k k k+
  CCG91340.1  22 EKNFEEAFEELEE-LAISAGGCIIERIVQRLSSPTAPFyiGKGKAKE 67 
                 3459999999999.7778888899**************984444444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.5
      PIN_12  50 ekkieeskklekalkslsklks 71 
                 ++ki +    +k+   l+++k+
  CCG91340.1 170 QEKIHRL---KKE---LEEVKK 185
                 3333333...122...222222 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.025
      PIN_12  65 s..lsklksakkklnekkkllslkeikkkieekveeslkkllekleaikvi 113
                    ++ +k++ ++++e++ l+ l +i++ ++e+  e+++k+le+l+a++++
  CCG91340.1 263 FhlVESFKATLEEVKEADLLIHLVDISHPLSENQIEEVNKVLEQLGALDKP 313
                 356899***************************9999********996654 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.9     0.041        49       2      18 ..     169     185 ..     168     187 .. 0.90
   2 ?    4.3   0.0     0.041        49      31      53 ..     256     278 ..     253     283 .. 0.92
   3 ?   -1.9   0.1       3.6   4.3e+03      52      65 ..     294     307 ..     293     308 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.041
  Val_tRNA-synt_C   2 vekeraRLeKeLaklek 18 
                      +++ + RL+KeL++++k
       CCG91340.1 169 IQEKIHRLKKELEEVKK 185
                      68899*********997 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.041
  Val_tRNA-synt_C  31 gFveKAPaeVVeeekaklaelee 53 
                      gF++K P + Ve  ka l+e++e
       CCG91340.1 256 GFIQKLPFHLVESFKATLEEVKE 278
                      8*******************987 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.6
  Val_tRNA-synt_C  52 eeqaeklkerLskL 65 
                      e+q e +++ L++L
       CCG91340.1 294 ENQIEEVNKVLEQL 307
                      56788888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       898  (0.0500865); expected 358.6 (0.02)
Passed bias filter:                      731  (0.0407719); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 3049.62
//
Query:       CCG91341.1  [L=265]
Description: Acyl-(acyl carrier protein)--UDP-N-acetylglucosamine O-acyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-25   86.7  18.0    5.7e-09   35.4   0.8    5.2  6  Hexapep          Bacterial transferase hexapeptide (six repea
    6.7e-24   84.2   0.0      1e-23   83.6   0.0    1.3  1  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D
      1e-05   25.2  12.6     0.0068   16.1   0.2    5.4  5  Hexapep_2        Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.9e-06     0.011       9      34 ..       1      26 [.       1      31 [. 0.81
   2 !   35.4   0.8   9.5e-13   5.7e-09       2      36 .]      12      46 ..      11      46 .. 0.96
   3 !   28.8   2.2   1.1e-10   6.6e-07       1      35 [.      29      63 ..      29      64 .. 0.96
   4 !   12.5   0.2   1.6e-05     0.094      19      35 ..      77      93 ..      76      94 .. 0.90
   5 !   25.5   0.2   1.2e-09   7.2e-06       2      36 .]     102     136 ..     102     136 .. 0.95
   6 !   12.9   0.0   1.1e-05     0.067       3      36 .]     139     172 ..     137     173 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.9e-06
                EE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep  9 lIgpfaviggnVkIGdnvkIgagvvi 34
                +I+p a++ + ++IG++v Ig+++ +
  CCG91341.1  1 MIHPTAIVSSKAEIGKDVSIGPWAIV 26
                58888888899999999999988876 PP

  == domain 2  score: 35.4 bits;  conditional E-value: 9.5e-13
                EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep  2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36
                + IG++v Igp+a++ +++ IGd++ I a++vi+g
  CCG91341.1 12 AEIGKDVSIGPWAIVEAGCSIGDGSEIRAHAVITG 46
                68*******************************97 PP

  == domain 3  score: 28.8 bits;  conditional E-value: 1.1e-10
                TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35
                ++ IG+++ I++ avi gn +IG++  Ig g+vig
  CCG91341.1 29 GCSIGDGSEIRAHAVITGNSQIGKRNQIGFGAVIG 63
                689*******************************8 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 1.6e-05
                TEEE-TTEEEETTEEEE CS
     Hexapep 19 nVkIGdnvkIgagvvig 35
                 V+IGd+ +I ++v+i+
  CCG91341.1 77 SVIIGDDNIIREYVTIH 93
                69*************97 PP

  == domain 5  score: 25.5 bits;  conditional E-value: 1.2e-09
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 t+IG+++++++++++++n+ + d v++ ++v ++g
  CCG91341.1 102 TKIGNHCFLMAGSHVAHNCLVEDQVVLVNNVLLAG 136
                 79****************************98875 PP

  == domain 6  score: 12.9 bits;  conditional E-value: 1.1e-05
                 EEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   3 vIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 ++++ +++g  avi+ +V IG+ + I   ++ig+
  CCG91341.1 139 HVEKRAFLGGAAVIHQHVRIGELTMIRGQTRIGK 172
                 5667777788888888888888888888888775 PP

>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   1.7e-27     1e-23       1      82 []     173     252 ..     173     252 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 1.7e-27
                      BB-TTEEEETTTTEEEEE-HHHHHHTT--HHHHHHHHHHHHHHHSSSS-HHHHHHHHHHHTTTSCCHHHHHHHHHH-SS-B- CS
  Acetyltransf_11   1 DVpPfvlvagnparlrglNlvgLkRrgfseeeikalkkayrllyrsglsleealeeleeeaeespevqelldFieaskRGii 82 
                      D pP+ ++     ++ g+N vgLkR+g++ee ++++++ay++ly sg+++++ale++e ++++++e+q+l+dFi+++kRGi+
       CCG91341.1 173 DLPPYFMAVD-TNEVSGINRVGLKRAGITEEIRRKIEEAYKILYFSGYNVSQALEKIE-KVSKCNEIQKLVDFIRKTKRGIC 252
                      99*******9.78********************************************6.9999******************8 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   1.1e-06    0.0068       4      33 ..      14      45 ..      11      45 .. 0.90
   2 ?    0.3   0.1       0.1     6e+02       4      17 ..      50      63 ..      48      65 .. 0.68
   3 ?   -0.0   0.2      0.13   7.5e+02       2       7 ..      78      83 ..      74      86 .. 0.67
   4 !    4.0   0.4    0.0073        44       2      29 ..     102     131 ..     101     134 .. 0.65
   5 !    7.7   0.0    0.0005         3       2      21 ..     138     159 ..     137     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-06
                E-TT-EE-TT-EE..SEEE-TT-EE-TT-EE- CS
   Hexapep_2  4 IGdnCliGanagi..GvslGdncvvgaGvvit 33
                IG+++ iG+ a++  G s+Gd++ + a  vit
  CCG91341.1 14 IGKDVSIGPWAIVeaGCSIGDGSEIRAHAVIT 45
                ************889*********99977776 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.1
                E-TT-EE-TT-EES CS
   Hexapep_2  4 IGdnCliGanagiG 17
                IG++  iG  a+iG
  CCG91341.1 50 IGKRNQIGFGAVIG 63
                66666677777776 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.13
                EEE-TT CS
   Hexapep_2  2 viIGdn 7 
                viIGd+
  CCG91341.1 78 VIIGDD 83
                566665 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.0073
                 EEE-TT-EE-TT-EE..SEEE-TT-EE-TT CS
   Hexapep_2   2 viIGdnCliGanagi..GvslGdncvvgaG 29 
                 ++IG+ C++ a + +     ++d +v+ ++
  CCG91341.1 102 TKIGNHCFLMAGSHVahNCLVEDQVVLVNN 131
                 799****99666665444555555555555 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.0005
                 EEE-TT-EE-TT-EE..SEEE- CS
   Hexapep_2   2 viIGdnCliGanagi..GvslG 21 
                 v+++++ ++G  a+i   v +G
  CCG91341.1 138 VHVEKRAFLGGAAVIhqHVRIG 159
                 99************97668888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2062.16
//
Query:       CCG91342.1  [L=42]
Description: hypothetical protein MFUM_1020066 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.014   15.2   0.0    1.1  1  DUF1952   Domain of unknown function (DUF1952)


Domain annotation for each model (and alignments):
>> DUF1952  Domain of unknown function (DUF1952)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   7.7e-07     0.014      13      39 ..       3      29 ..       1      38 [. 0.90

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.7e-07
     DUF1952 13 leeWGaveedeGvyrldGavvrfrele 39
                +eeWG + +++G  + + ++vrfr ++
  CCG91342.1  3 MEEWGEISDGHGGSQGPASLVRFRVVP 29
                69**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        82  (0.0045736); expected 358.6 (0.02)
Passed bias filter:                       77  (0.00429472); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 345.28
//
Query:       CCG91343.1  [L=55]
Description: hypothetical protein MFUM_1020067 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 393.77
//
Query:       CCG91344.1  [L=133]
Description: hypothetical protein MFUM_1020068 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       135  (0.0075297); expected 358.6 (0.02)
Passed bias filter:                      121  (0.00674884); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 991.94
//
Query:       CCG91345.1  [L=151]
Description: hypothetical protein MFUM_1020069 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.12   12.4   0.1        0.2   11.6   0.1    1.4  1  Methyltranf_PUA  RNA-binding PUA-like domain of methyltransfe


Domain annotation for each model (and alignments):
>> Methyltranf_PUA  RNA-binding PUA-like domain of methyltransferase RsmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.1e-05       0.2      18      36 ..     122     140 ..      99     143 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.1e-05
  Methyltranf_PUA  18 kGwvlVcydgyplGwgKlv 36 
                      +Gw+   ++g+p G gK++
       CCG91345.1 122 TGWMRFFWRGFPAGTGKRT 140
                      3****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       190  (0.0105974); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1164.12
//
Query:       CCG91346.1  [L=179]
Description: Adenine phosphoribosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-14   52.6   0.0    4.8e-14   52.2   0.0    1.1  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.032   13.7   0.0      0.043   13.3   0.0    1.2  1  PRTase_2      Phosphoribosyl transferase
      0.081   12.4   0.0        0.1   12.0   0.0    1.2  1  UPRTase       Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   8.1e-18   4.8e-14      14     118 ..      44     151 ..      37     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 8.1e-18
                   EEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE...............EE----TTSEEEEE-SEESSSHHH CS
  Pribosyltran  14 avarlaaeileeyngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdes.......rlledpagkkVliVDDildtGgTl 103
                    +  +  +++++   k+d +++i+ +G++fa++la+ L+v +  +rk+ + p ++ e + +s+          +  ++++g+++li+DD+l+tG+T 
    CCG91346.1  44 LIMTIFISRYQK--KKIDKIAAIDARGFIFAGALAHSLGVGIIPIRKKGKLPYKTYELPYKSE--YgeeiltiHQDAITKGESILIIDDVLATGNTA 136
                   555555555555..9******************************************986553..35689*************************** PP

                   HHHHHHHHCC-BSEE CS
  Pribosyltran 104 laalelLkekgpeev 118
                   l a+ l++++g   +
    CCG91346.1 137 LTAALLIEKCGGNLM 151
                   ***999999998744 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.2e-06     0.043     111     145 ..     110     144 ..     105     168 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.2e-06
    PRTase_2 111 yaedeellaaakelvLvDDEistGktalnliralq 145
                 ++ +++++++ ++++++DD ++tG+tal  +  ++
  CCG91346.1 110 LTIHQDAITKGESILIIDDVLATGNTALTAALLIE 144
                 55678999999****************98765554 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.7e-05       0.1     120     155 ..     119     154 ..      89     170 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.7e-05
     UPRTase 120 aertvlllDpviaTGgsaaaaiqlLkergvgeekIl 155
                 + +++l++D v+aTG++a +a  l+ + g +  +  
  CCG91346.1 119 KGESILIIDDVLATGNTALTAALLIEKCGGNLMELG 154
                 5677*****************999988776655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1464.98
//
Query:       CCG91347.1  [L=286]
Description: RNA polymerase sigma factor [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-20   70.9   5.5    6.3e-19   67.9   1.7    2.4  2  Sigma70_r3     Sigma-70 region 3
    7.9e-19   67.2   0.0    1.8e-18   66.0   0.0    1.7  1  Sigma70_r2     Sigma-70 region 2
    1.2e-17   63.2   8.6    3.3e-17   61.7   3.1    2.8  3  Sigma70_r4     Sigma-70, region 4
      6e-16   58.2   1.3    1.5e-15   56.9   1.3    1.7  1  Sigma70_r1_2   Sigma-70 factor, region 1.2
    0.00047   19.8   1.7      0.043   13.5   0.6    3.1  2  Sigma70_r4_2   Sigma-70, region 4
     0.0023   17.8   0.3       0.57   10.2   0.1    2.6  2  HTH_11         HTH domain
  ------ inclusion threshold ------
      0.012   15.4   0.1        1.9    8.4   0.0    2.8  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.037   13.7   0.3        9.9    5.9   0.1    2.8  2  GntR           Bacterial regulatory proteins, gntR family
      0.039   13.7   0.1        1.4    8.8   0.0    2.8  2  HTH_23         Homeodomain-like domain


Domain annotation for each model (and alignments):
>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   1.7   3.2e-22   6.3e-19       2      77 ..     124     200 ..     123     201 .. 0.95
   2 ?    4.4   0.1     0.021        41      22      46 ..     238     262 ..     232     278 .. 0.86

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 3.2e-22
                 HHHHHHHHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHHHHHHHXXXEETTXBSSSSTTX.BSTTTXBXSSSXXHHHC CS
  Sigma70_r3   2 klnkikraqreLeqelgrePtpeEiAeeLglseekVrevleaarepvSldlpvgeeedt.elgdlleddeaespeea 77 
                 k+ k +r++ +L++ lgr+Pt+eE+AeeLg+s  kV e+  +a +p Sld  vgeeed+ +lg+l+ d++a+sp+++
  CCG91347.1 124 KIAKMRRVAMQLSEVLGRDPTDEELAEELGMSTTKVAELRTIAIRPASLDATVGEEEDGtSLGELVKDESATSPDQS 200
                 78999****************************************************96269************986 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.021
                 XHHHHHHHHTXXHHHHHHHHHHHXX CS
  Sigma70_r3  22 tpeEiAeeLglseekVrevleaare 46 
                 t eEi +e  ++ e++r++ ++a +
  CCG91347.1 238 TLEEIGKEFHVTRERIRQLQNIALR 262
                 78*****************999876 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   9.2e-22   1.8e-18       1      70 [.      44     113 ..      44     114 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 9.2e-22
                 HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                 +++++l+lv+++a+ +++sg+   Dl++e++++l++av+rfdp++g ++s+++ +++++ ++++l  +++
  CCG91347.1  44 MIQANLRLVVKIAHDYANSGLPLPDLISEGNIGLMKAVDRFDPSKGGKLSTYAAWWIKQSIKRALANQSK 113
                 689**************************************************************99886 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.7   3.3e+03      37      46 ..     100     109 ..      99     110 .. 0.86
   2 ?    3.9   0.1     0.019        38      18      37 ..     140     159 ..     127     168 .. 0.78
   3 !   61.7   3.1   1.6e-20   3.3e-17       2      50 .]     214     266 ..     213     266 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.7
                 HHHHHHHHHH CS
  Sigma70_r4  37 VrqiekrAlr 46 
                 ++q +krAl 
  CCG91347.1 100 IKQSIKRALA 109
                 8999****96 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.019
                 TTT--HHHHHHHHTS-HHHH CS
  Sigma70_r4  18 geglTleEIgerlgiSrerV 37 
                 g++ T eE++e+lg+S   V
  CCG91347.1 140 GRDPTDEELAEELGMSTTKV 159
                 6677889********97655 PP

  == domain 3  score: 61.7 bits;  conditional E-value: 1.6e-20
                 HHHS-HHHHHHHHHHH....TTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrf....geglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 L +L+erer++l+lrf     e +TleEIg++++++rer+rq+++ Alrk+Rk
  CCG91347.1 214 LPKLDERERKILSLRFglegNEQMTLEEIGKEFHVTRERIRQLQNIALRKIRK 266
                 889*************************************************7 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   1.3   7.4e-19   1.5e-15       2      34 .]       7      39 ..       6      39 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 7.4e-19
                  HHHHHHHHHHHSX--THHHHHHHHHHHHCCHHH CS
  Sigma70_r1_2  2 pvrlYLrEIGriPLLtaeEEveLAkrieaGdea 34
                  +++lYLrEI++iPLLt+e EveLAkri++Gd++
    CCG91347.1  7 ALKLYLREISQIPLLTKEKEVELAKRIQQGDQE 39
                  69*****************************96 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.024        48      30      43 ..     146     159 ..     129     162 .. 0.88
   2 !   13.5   0.6   2.1e-05     0.043       3      44 ..     209     254 ..     207     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.024
                   HHHHHHHT--HHHH CS
  Sigma70_r4_2  30 kEIAellgisegtV 43 
                   +E Ae+lg+s + V
    CCG91347.1 146 EELAEELGMSTTKV 159
                   799*******8877 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.1e-05
                   HHHHHHTTS-HHHHHHHHHHHT....S---HHHHHHHHT--HHHHH CS
  Sigma70_r4_2   3 alrealaeLperqreifllryl....eglsykEIAellgisegtVk 44 
                    ++e+l +L er+r+i+ lr+     e+++ +EI ++++++   ++
    CCG91347.1 209 TILELLPKLDERERKILSLRFGlegnEQMTLEEIGKEFHVTRERIR 254
                   599****************985333367999999999998876666 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.012        24      19      30 ..     146     157 ..     137     160 .. 0.88
   2 !   10.2   0.1   0.00029      0.57       1      33 [.     220     254 ..     220     255 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.012
      HTH_11  19 eeLAeeLnvSrr 30 
                 eeLAeeL++S++
  CCG91347.1 146 EELAEELGMSTT 157
                 89********97 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00029
      HTH_11   1 Rllqilel...LleargpisgeeLAeeLnvSrrtvr 33 
                 R+++il l   L e +++++ ee+ +e++v+r  +r
  CCG91347.1 220 RERKILSLrfgL-EGNEQMTLEEIGKEFHVTRERIR 254
                 788899888877.88889**************8777 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00094       1.9      21      36 ..     146     161 ..     143     161 .. 0.90
   2 ?    4.0   0.0     0.023        45       6      35 ..     222     254 ..     217     255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00094
  HTH_AsnC-type  21 aeLAervGlSestvlr 36 
                    +eLAe++G+S++ v++
     CCG91347.1 146 EELAEELGMSTTKVAE 161
                    79**********9985 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.023
  HTH_AsnC-type   6 rkILea...LqedaRisyaeLAervGlSestvl 35 
                    rkIL++   L+ +  ++ +e++++ ++++++++
     CCG91347.1 222 RKILSLrfgLEGNEQMTLEEIGKEFHVTRERIR 254
                    55665555577788899***********99886 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0093        19      25      43 ..     143     161 ..     141     162 .. 0.92
   2 ?    5.9   0.1     0.005       9.9      19      43 ..     232     255 ..     203     263 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0093
                 --HHHHHHHHTS-HHHHHH CS
        GntR  25 PsereLaaefgVsrttvRe 43 
                 P+ +eLa+e+g s+t v e
  CCG91347.1 143 PTDEELAEELGMSTTKVAE 161
                 8899**********99876 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.005
                 -TTSB---HHHHHHHHTS-HHHHHH CS
        GntR  19 rpGdkLPsereLaaefgVsrttvRe 43 
                 + ++++ + +e+ +ef+V+r  +R+
  CCG91347.1 232 EGNEQM-TLEEIGKEFHVTRERIRQ 255
                 456899.*************99996 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.11   2.2e+02      19      34 ..     144     159 ..     126     163 .. 0.82
   2 ?    8.8   0.0   0.00072       1.4      14      37 ..     230     256 ..     215     271 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.11
      HTH_23  19 svreIAreLgvsrrTv 34 
                 + +e A+eLg+s   v
  CCG91347.1 144 TDEELAEELGMSTTKV 159
                 5789999999997655 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00072
      HTH_23  14 lae...GlsvreIAreLgvsrrTvyrw 37 
                  +e    ++ +eI +e++v+r  +++ 
  CCG91347.1 230 GLEgneQMTLEEIGKEFHVTRERIRQL 256
                 44444589**************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1033  (0.0576162); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.56
# Mc/sec: 1534.33
//
Query:       CCG91348.1  [L=322]
Description: subunit of cysteine synthase A and O-acetylserine sulfhydrolase A, PLP-dependent enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-68  230.0   0.5    4.4e-68  229.8   0.5    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
      0.062   12.6   0.1      0.089   12.1   0.1    1.2  1  DUF4938   Domain of unknown function (DUF4938)
       0.08   12.3   0.1       0.11   11.9   0.1    1.2  1  DUF3530   Protein of unknown function (DUF3530)


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.8   0.5   7.4e-72   4.4e-68       4     291 ..      10     297 ..       7     300 .. 0.94

  Alignments for each domain:
  == domain 1  score: 229.8 bits;  conditional E-value: 7.4e-72
                 CSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHH CS
        PALP   4 gigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrl 99 
                  ig+TPlvrl+++++ l +++ +K+E++np+ S+KdR    ++ +++++    +++t++e +sGN+g+alA++aa+ G+++++ +p+++s e++ ll l
  CCG91348.1  10 TIGRTPLVRLNKMTQGLEAQVAIKCEFFNPLSSVKDRIGIAMINQAEREgkiDAKTTIIEPTSGNTGIALAFVAAAKGYPLILTMPESMSIERRTLLAL 108
                 79*******************************************88888************************************************* PP

                 TT-EEEEE..CCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTT CS
        PALP 100 lGaevvev..ggdydeavaaaaelaaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegs 195
                 lGa+++++  +++   av++a e+a+++e+  + +qfdnp++ e    t++ Ei+ ++ gk+d +v++vG+Gg+i+G++  +k+r+++   ++vep+ s
  CCG91348.1 109 LGARLILTpaQQGMRGAVEKAIEIASKTENSWIPQQFDNPANPEIhRRTTAEEIWNDTEGKVDIFVAGVGTGGTITGVSEVIKKRKSSFYSVAVEPAAS 207
                 ********88888************************************************************************************** PP

                 CGGTTCCS..S.SS..B.SSS.CCSTCS.CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCTTCEEEEEE CS
        PALP 196 dalarslragrrvtvpvsdtiadglavg.spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelkegdrvvvi 291
                 + + ++l   r ++++++++ ++g+++g +p +l+++++d    e+ tv+d+ea+ ++++la++egi+++ ss+a + a+ + ++++e k++  +v+i
  CCG91348.1 208 PVISQTL---RGEPLKPGPHKIQGIGAGfVPKNLNLKIID----EVFTVTDQEAITTAQRLASEEGILAGISSGATVFAAiEIAKRKENKGK-LIVAI 297
                 *******...77778999********************95....6666***********************666666666588888888888.88877 PP

>> DUF4938  Domain of unknown function (DUF4938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.5e-05     0.089     143     202 ..     260     321 ..     244     322 .] 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.5e-05
     DUF4938 143 rlligqgergwivapadlraapdlqppwsrlgril..iiavtgeryrqqaiaeqaarhqgii 202
                 rl   +g    i + a + aa ++       g+++  i a tgery   a+aeqa +  g i
  CCG91348.1 260 RLASEEGILAGISSGATVFAAIEIAKRKENKGKLIvaIAASTGERYLSTALAEQAKKFAGGI 321
                 55555666666777888888888888888888865225688**************9998755 PP

>> DUF3530  Protein of unknown function (DUF3530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.9e-05      0.11     185     248 ..     252     316 ..     200     321 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
     DUF3530 185 qaaiaflnqrgaenivllghgtgAywaary.laekksakvdaLvlvdarepaeaaekqLaeqlak 248
                 q+ai +++   +e+ +l g  +gA   a + +a++k++k++ +v ++a + +++   +Laeq +k
  CCG91348.1 252 QEAITTAQRLASEEGILAGISSGATVFAAIeIAKRKENKGKLIVAIAASTGERYLSTALAEQAKK 316
                 78**********************9866664788899************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.52
# Mc/sec: 1860.73
//
Query:       CCG91349.1  [L=245]
Description: Metallophosphoesterase, PP2A family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-23   83.3   0.0    2.5e-23   83.1   0.0    1.1  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
    1.1e-12   48.8   0.0    2.1e-12   48.0   0.0    1.5  1  Metallophos    Calcineurin-like phosphoesterase
     0.0004   19.8   0.0     0.0006   19.2   0.0    1.3  1  Metallophos_3  Metallophosphoesterase, calcineurin superfamil
    0.00075   17.9   0.1        0.1   10.9   0.0    2.2  2  FBPase_2       Firmicute fructose-1,6-bisphosphatase


Domain annotation for each model (and alignments):
>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   5.7e-27   2.5e-23       1     163 [.       1     208 [.       1     210 [. 0.74

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 5.7e-27
  Metallophos_2   1 MklaiiSDlHsnldaleavlealkevgvdaiihaGDl..eeeepe.vleellelapvlaVrGNnD..........eev..veedvlreaaelgtdl 81 
                    Mk+a++SD+H+nl+ale vle++++ +vd+ii++GD+  +++ep+ +l++++e+a++ +  GN+D            +    + ++ ea ++++++
     CCG91349.1   1 MKIAFLSDIHGNLEALESVLEEIAKIQVDKIICLGDVvgYGAEPSrCLQKIREQAEI-ILMGNHDyycslpqipeA-IanQLNPIALEAIHFTRSI 94 
                    ************************************99******999*****98665.679****99999988741.3455566666666666766 PP

  Metallophos_2  82 ..peeaelel......agekvlliHgdpl......gvkdalaellkeaeegsd.vvvcGHtHvpevekeg.........gv........lvvnPGs 145
                      +ee+++ +      ++e++  +H+         ++  +++e+ +   ++s+ + ++GHtH+  ++ ++         ++         ++n Gs
     CCG91349.1  95 lsKEEKQCLAslpliwQNEDLMAVHSN-FrsptswQYVLSNEEAEENFRATSFrIGFLGHTHIVALFVQNdhsvfqfrfKRlflkenfrFLLNVGS 189
                    54233333335566778889*****98.54888664444444444444455558**********6666643333333330034444444666**** PP

  Metallophos_2 146 vgeprdgdpe.tyaildtd 163
                    vg+prdgdp+  +++++t+
     CCG91349.1 190 VGQPRDGDPRaAFVVYETE 208
                    *********9999999987 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   4.8e-16   2.1e-12       1     116 [.       1      92 [.       1     157 [. 0.66

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 4.8e-16
                  EEEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TTS...........CHHHHHHHHHHH CS
  Metallophos   1 lrilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvkypipvylllGNHe...........gfeeellnkygy 87 
                  ++i++++D+H     g+l++l+ +l+++++  ++d ++++GD+v  g  ++++l+ +++  +     ++l+GNH+                       
   CCG91349.1   1 MKIAFLSDIH-----GNLEALESVLEEIAKI-QVDKIICLGDVVGYGAEPSRCLQKIREQAE-----IILMGNHDyycslpqipeaI----------- 76 
                  89********.....*************999.***************8888899999*****.....********444443333220........... PP

                  HHHHHHHHEHHHCEEETSEEEEEETTEEE CS
  Metallophos  88 lgifsepwrsdaevfnnlplaslgsgslk 116
                             a+ +n + l +++ +  +
   CCG91349.1  77 -----------ANQLNPIALEAIHFT--R 92 
                  ...........333334444443333..3 PP

>> Metallophos_3  Metallophosphoesterase, calcineurin superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.3e-07    0.0006       7      51 ..       2      46 ..       1      72 [. 0.83

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.3e-07
                   EEEEEE--TT-GGGHHHHHHHHHHH--SEEEEES-----HHHHHH CS
  Metallophos_3  7 kvlaisdlkgevellerlveviedkdpDllvlvGdlvkaeakade 51
                   k+  +sd++g+ e le+++e i+  ++D ++ +Gd+v+ +a+   
     CCG91349.1  2 KIAFLSDIHGNLEALESVLEEIAKIQVDKIICLGDVVGYGAEPSR 46
                   67789********************************99987655 PP

>> FBPase_2  Firmicute fructose-1,6-bisphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0   0.00063       2.8      35      53 ..       4      22 ..       2      24 .. 0.90
   2 !   10.9   0.0   2.3e-05       0.1     177     221 ..      21      64 ..      18      67 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00063
    FBPase_2 35 hflsDiHGeyeafshvlkn 53
                 flsDiHG+ ea++ vl++
  CCG91349.1  4 AFLSDIHGNLEALESVLEE 22
                59*************9975 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 2.3e-05
    FBPase_2 177 eliqrlavdklhivGDiyDRGpeadkildeLmkyhsvdiqWGNHD 221
                 e i ++ vdk+  +GD+   G e+ + l+++ ++ ++ i  GNHD
  CCG91349.1  21 EEIAKIQVDKIICLGDVVGYGAEPSRCLQKIREQAEI-ILMGNHD 64 
                 56899****************************9998.889**** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1776.65
//
Query:       CCG91350.1  [L=318]
Description: ADP-heptose:LPS heptosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-34  118.9   0.0    1.3e-32  113.1   0.0    2.8  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.91    9.5   0.0    2.0  2  Nup35_RRM       Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.0   1.4e-36   1.3e-32       2     246 ..      73     293 ..      72     295 .. 0.86

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 1.4e-36
                     HHHHHHTTTTT-SEEEE-S--SGGGHHHHHTT-SEEEEE-TTT-.TTT-TEEE---TTT--SHHHHHHHTTS-GGGS-SS---------HHHHHH CS
  Glyco_transf_9   2 lrlakaLrekayDlvidlqgllkSAllvralkapvriGldeesrelaslfysrkvdkakgqhaVernraLfaqaldlpkpeskpelalslkeraa 96 
                      +l+++L++++yD+v+dlqgl++S ++  + +a+ +iG  ++ re +++fy+ ++  +  ++a er+++ ++ +l+++ +     +a +l+    
      CCG91350.1  73 IKLIRTLQKERYDMVLDLQGLFRSGIICGFSGAKRKIGP-WNGREGSLFFYKERIMPP-PPPAQERYLEFLR-YLGIQPD----PYAFQLPLLPP 160
                     69************************************5.666669**********99.89999***99765.5666632....23455555555 PP

                     HHHHTT--SSS-EEEEE---TTGGGS--HHHHHHHHHHHHHTT-EEEE---GGGHHHHHHTTS-HHHHTTEEE-TTTS-HHHHHHHHHTSSEEEE CS
  Glyco_transf_9  97 aldaagllaerpyivflpgaskdaKrWpeekyaelaealqekgyqvvLfgsaeaeeeeiaeriaagleekavnllgktsLeelaallakadlvvg 191
                      ld         yiv+ p +++++K Wp ++y++l+ +l +     v++g  +         +     + +++l gk+ L +l+all +a+++++
      CCG91350.1 161 ILDIK------DYIVVHPYSRWPSKIWPWRNYQALTLRLPQFH--FVFVGIGPW-----FPVNE----ANCTDLRGKLPLGKLIALLGNAKAMIS 238
                     55555......5*****************************99..555555555.....22233....3388*********************** PP

                     ESSHHHHHHHHTT--EEEEESSS-TTSS----TTEEEEESS--.----------- CS
  Glyco_transf_9 192 nDSGlmHlAaAldrpviaLYgptdpkrtgplsksativsleeeaspelkkedslk 246
                      DSG++HlAaAl+ p++ ++gptd  + +p+++++ ++ ++ ++sp+ ++++ +k
      CCG91350.1 239 GDSGPAHLAAALGCPTLVMFGPTDAAESRPIGRKVFVLQSDVSCSPCWHANCLNK 293
                     **************************************************99886 PP

>> Nup35_RRM  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.058   5.2e+02      22      40 ..       3      21 ..       1      44 [. 0.72
   2 ?    9.5   0.0    0.0001      0.91      12      49 ..      44      82 ..      34     143 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.058
                HHHHHHHTTS-BSS--CCC CS
   Nup35_RRM 22 evlehFskfGeiledvqvl 40
                +++ + s fG i++ + v 
  CCG91350.1  3 ILIIKLSSFGDIIQCFPVA 21
                578899*******999664 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0001
                EE-S-GGGHHH.HHHHHHTTS-BSS--CCC--------- CS
   Nup35_RRM 12 vFGfpesiane.vlehFskfGeiledvqvlklgkglnpk 49
                +F +++si+    + h+s +G++ + vq++kl + l+ +
  CCG91350.1 44 LFEYQPSISRVfTIPHYSSCGMVESLVQIIKLIRTLQKE 82
                58899999986269*******************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2124.83
//
Query:       CCG91351.1  [L=258]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.003   17.8   5.4        1.7    9.0   0.1    4.4  4  HTH_Tnp_1       Transposase
     0.0031   18.1   0.0        3.9    8.2   0.0    2.4  2  RPA_C           Replication protein A C terminal
  ------ inclusion threshold ------
      0.019   15.7   0.3         24    5.7   0.0    3.5  4  LIN52           Retinal tissue protein
      0.026   14.4   0.5        3.1    7.8   0.1    2.6  2  AvrM_N          Flax-rust effector AvrM N-terminal domain
      0.028   14.7   0.0        7.2    6.9   0.0    3.1  4  THF_DHG_CYH     Tetrahydrofolate dehydrogenase/cyclohydrolase
      0.031   14.6   0.5         11    6.4   0.0    3.5  4  Radical_SAM     Radical SAM superfamily
      0.098   13.0   1.0         15    5.9   0.0    3.4  4  EndoU_bacteria  Bacterial EndoU nuclease
       0.17   11.9   0.4         43    4.3   0.0    3.1  3  HTH_22          HTH domain
        0.3   11.0   4.2        1.3    9.0   0.0    3.1  4  Myb_DNA-bind_7  Myb DNA-binding like


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.29   5.7e+02       2      25 ..      11      34 ..      10      43 .. 0.88
   2 ?    5.1   0.0     0.014        27       3      24 ..      74      95 ..      72      99 .. 0.85
   3 ?    2.0   0.0      0.14   2.7e+02      35      72 ..     115     157 ..     113     160 .. 0.70
   4 !    9.0   0.1   0.00088       1.7       2      25 ..     200     223 ..     199     237 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.29
   HTH_Tnp_1  2 rrrrrwsdefKariVreslepgks 25
                ++++ w++++ ++ ++   e+gk+
  CCG91351.1 11 KKNKEWTEAVVLEEIKKWHEAGKP 34
                6899*********99999999986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.014
   HTH_Tnp_1  3 rrrrwsdefKariVreslepgk 24
                r + ws+e +++++++ + +g+
  CCG91351.1 74 RYKAWSKEKIIQMIQQLYRQGT 95
                5578************999987 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.14
   HTH_Tnp_1  35 vspnqLykWrrqyregeeaspae.....feltaleeenrelkr 72 
                 + pn +  W+ +  +  +a+++       +  ++ ee+r+l +
  CCG91351.1 115 IRPNYFGSWKNALLAAGLAPQDIyryksWKNENILEEIRRLYK 157
                 6789999999999977777777756655555566666666655 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00088
   HTH_Tnp_1   2 rrrrrwsdefKariVreslepgks 25 
                 r r+rws+e++++ +r   e g s
  CCG91351.1 200 RNRKRWSKEQIIQGIRSLKEKGIS 223
                 579**********99988777755 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0024       4.7      61      95 ..      60      94 ..       8      95 .. 0.90
   2 !    8.2   0.0    0.0019       3.9      61      96 ..     187     222 ..     142     227 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0024
                .SXSTTTEEHHHHHHHSTSXHHHHHHHHHHHHHTT CS
       RPA_C 61 speseeGvhvdeiaqklrlsvndvkqavdeLsneG 95
                ++ + +G++ dei +    s++++ q +++L  +G
  CCG91351.1 60 KAVEAAGLSYDEIRRYKAWSKEKIIQMIQQLYRQG 94
                567889**************************999 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0019
                 .SXSTTTEEHHHHHHHSTSXHHHHHHHHHHHHHTTS CS
       RPA_C  61 speseeGvhvdeiaqklrlsvndvkqavdeLsneGi 96 
                 s+ +++G+  d i ++ r s++++ q +++L ++Gi
  CCG91351.1 187 SAIEQAGLDYDKIRNRKRWSKEQIIQGIRSLKEKGI 222
                 566899****************************97 PP

>> LIN52  Retinal tissue protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.8   5.5e+03      52      72 ..      10      30 ..       7      42 .. 0.76
   2 ?    2.1   0.0      0.16   3.2e+02      49      73 ..      69      93 ..      34     103 .. 0.79
   3 ?    3.7   0.0     0.053   1.1e+02      51      74 ..     136     159 ..     119     172 .. 0.83
   4 ?    5.7   0.0     0.012        24      39      85 ..     184     232 ..     164     235 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.8
       LIN52 52 lnelgsltteqLlekvkelqd 72
                +++ ++ t++ +le++k+ ++
  CCG91351.1 10 IKKNKEWTEAVVLEEIKKWHE 30
                566667777788888888765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.16
       LIN52 49 iellnelgsltteqLlekvkelqdl 73
                ++ ++++++ ++e++++ +++l+ +
  CCG91351.1 69 YDEIRRYKAWSKEKIIQMIQQLYRQ 93
                67899999************99866 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.053
       LIN52  51 llnelgsltteqLlekvkelqdla 74 
                  +++++s ++e++le++++l+++ 
  CCG91351.1 136 DIYRYKSWKNENILEEIRRLYKEG 159
                 58999***************9875 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.012
       LIN52  39 ewkeelekd..diellnelgsltteqLlekvkelqdlayqLgleEskem 85 
                 +w++ +e+   d++++++ ++ ++eq+++ +++l+++   L     +e+
  CCG91351.1 184 SWSSAIEQAglDYDKIRNRKRWSKEQIIQGIRSLKEKGISLTSTKVREV 232
                 56666665444999*********************99888877776665 PP

>> AvrM_N  Flax-rust effector AvrM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.019        37      20      52 ..      60      92 ..      41      97 .. 0.87
   2 ?    7.8   0.1    0.0015       3.1      27      57 ..     132     162 ..     128     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.019
      AvrM_N 20 kpaevekLspdeliRYvaerdtnvekmarkLyk 52
                k +e + Ls de+ RY a    ++ +m  +Ly 
  CCG91351.1 60 KAVEAAGLSYDEIRRYKAWSKEKIIQMIQQLYR 92
                5678889***********999999999999986 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0015
      AvrM_N  27 LspdeliRYvaerdtnvekmarkLykaakey 57 
                 L p  + RY + ++ n+  + r Lyk + + 
  CCG91351.1 132 LAPQDIYRYKSWKNENILEEIRRLYKEGADL 162
                 889999*******************987654 PP

>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.9   5.8e+03      63      82 ..      10      29 ..       7      33 .. 0.73
   2 ?    6.9   0.0    0.0036       7.2      41      82 ..      50      91 ..      19      95 .. 0.90
   3 ?   -0.8   0.0      0.89   1.8e+03      48      83 ..     122     157 ..     117     161 .. 0.74
   4 ?    3.4   0.0     0.044        88      51      83 ..     187     219 ..     178     222 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.9
                 EEE-TT--HHHHHHHHHHHH CS
  THF_DHG_CYH 63 iklpedvseeellklieeln 82
                 ik +++ +e+ +l++i++  
   CCG91351.1 10 IKKNKEWTEAVVLEEIKKWH 29
                 55567788889999998865 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0036
                 HHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHH CS
  THF_DHG_CYH 41 asevYvrnkkkaceevGieseliklpedvseeellklieeln 82
                 a+  Y  n  ka+e++G+ +++i+  +  s+e++++ i++l 
   CCG91351.1 50 AAVRYFGNWGKAVEAAGLSYDEIRRYKAWSKEKIIQMIQQLY 91
                 6677999999***************999***********985 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.89
                  HHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH CS
  THF_DHG_CYH  48 nkkkaceevGieseliklpedvseeellklieelne 83 
                  + k+a  ++G+  + i   ++ ++e++l++i++l +
   CCG91351.1 122 SWKNALLAAGLAPQDIYRYKSWKNENILEEIRRLYK 157
                  556677777777777766688999999999999865 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.044
                  HHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH CS
  THF_DHG_CYH  51 kaceevGieseliklpedvseeellklieelne 83 
                   a+e++G+++++i+  +  s+e++++ i++l e
   CCG91351.1 187 SAIEQAGLDYDKIRNRKRWSKEQIIQGIRSLKE 219
                  6899*************************9986 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.047        93     121     143 ..      13      34 ..       3      55 .. 0.79
   2 ?   -0.8   0.0      0.85   1.7e+03     122     152 ..      74     104 ..      61     109 .. 0.68
   3 ?   -0.6   0.0      0.77   1.5e+03      27      45 ..     141     158 ..     133     163 .. 0.60
   4 ?    6.4   0.0    0.0055        11     117     143 ..     196     223 ..     184     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.047
                  HTCTSHHHHHHHHHHHHHHTTSE CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 121 mnrghtfeevlealeklreagik 143
                  + + +t   vle ++k++eag +
   CCG91351.1  13 N-KEWTEAVVLEEIKKWHEAGKP 34 
                  3.789999************988 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.85
                  T.CTSHHHHHHHHHHHHHHTTSETEEEEEEEB CS
                  x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 122 n.rghtfeevlealeklreagikrvvdrivgl 152
                  + + ++ e++++ ++ l + g +  ++r ++l
   CCG91351.1  74 RyKAWSKEKIIQMIQQLYRQGTD-LSFRSMML 104
                  33567778888888888777766.66666665 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.77
                  HHHHHHHHHHHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  27 rslsveeileevkelkaek 45 
                  +s   e+ilee+++l+ + 
   CCG91351.1 141 KSWKNENILEEIRRLY-KE 158
                  4445567777777763.43 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0055
                  HHHHHT.CTSHHHHHHHHHHHHHHTTSE CS
                  xxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 117 vlklmn.rghtfeevlealeklreagik 143
                  + k+ n ++++ e+++++++ l+e+gi 
   CCG91351.1 196 YDKIRNrKRWSKEQIIQGIRSLKEKGIS 223
                  556666678*****************97 PP

>> EndoU_bacteria  Bacterial EndoU nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.4   2.7e+03      71      87 ..      15      31 ..      13      44 .. 0.81
   2 ?    5.9   0.0    0.0076        15      71      88 ..      77      94 ..      76     101 .. 0.88
   3 ?    2.2   0.0      0.11   2.2e+02      70      94 ..     141     165 ..     140     202 .. 0.79
   4 ?    0.5   0.0      0.36   7.2e+02      70      88 ..     203     221 ..     197     233 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.4
  EndoU_bacteria 71 twsaekildaveeaaen 87
                     w+++ +l+++++ +e 
      CCG91351.1 15 EWTEAVVLEEIKKWHEA 31
                    79999999999987775 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0076
  EndoU_bacteria 71 twsaekildaveeaaenk 88
                     ws+eki++++++ +++ 
      CCG91351.1 77 AWSKEKIIQMIQQLYRQG 94
                    6**************976 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.11
  EndoU_bacteria  70 dtwsaekildaveeaaenknstesq 94 
                     ++w +e il+++++ ++   +  s+
      CCG91351.1 141 KSWKNENILEEIRRLYKEGADLSSK 165
                     58***************77666554 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.36
  EndoU_bacteria  70 dtwsaekildaveeaaenk 88 
                     ++ws+e+i++ +++  e+ 
      CCG91351.1 203 KRWSKEQIIQGIRSLKEKG 221
                     68*******9998876655 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.033        67      18      37 ..      76      95 ..      68      96 .. 0.87
   2 ?   -0.3   0.0      0.59   1.2e+03      22      37 ..     145     160 ..     138     174 .. 0.74
   3 ?    4.3   0.0     0.021        43      18      37 ..     203     222 ..     187     232 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.033
      HTH_22 18 erltkeekieivraLdekGi 37
                ++ +ke+ i+++++L+++G+
  CCG91351.1 76 KAWSKEKIIQMIQQLYRQGT 95
                46789999**********95 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.59
      HTH_22  22 keekieivraLdekGi 37 
                 +e  +e +r+L+++G+
  CCG91351.1 145 NENILEEIRRLYKEGA 160
                 5555678999999997 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.021
      HTH_22  18 erltkeekieivraLdekGi 37 
                 +r +ke+ i+ +r+L+ekGi
  CCG91351.1 203 KRWSKEQIIQGIRSLKEKGI 222
                 5889***************8 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       2.1   4.2e+03      62      72 ..       8      18 ..       2      32 .. 0.54
   2 ?    9.0   0.0   0.00065       1.3       2      36 ..      69     103 ..      68     109 .. 0.85
   3 ?   -3.3   0.0       4.3   8.6e+03      10      30 ..     142     162 ..     139     170 .. 0.57
   4 ?    2.3   0.0     0.078   1.5e+02       2      28 ..     196     222 ..     195     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.1
  Myb_DNA-bind_7 62 kalkkrkeldl 72
                    +++kk+ke+  
      CCG91351.1  8 QTIKKNKEWTE 18
                    55555544333 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00065
  Myb_DNA-bind_7   2 frkrkktkkWskeetekFYkaLsqfGtDFsliakl 36 
                     + + ++ k Wske+  +  + L   GtD+s+ + +
      CCG91351.1  69 YDEIRRYKAWSKEKIIQMIQQLYRQGTDLSFRSMM 103
                     77778899********************9976555 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4.3
  Myb_DNA-bind_7  10 kWskeetekFYkaLsqfGtDF 30 
                     +W++e+  +  + L + G D+
      CCG91351.1 142 SWKNENILEEIRRLYKEGADL 162
                     566655555445555555554 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.078
  Myb_DNA-bind_7   2 frkrkktkkWskeetekFYkaLsqfGt 28 
                     + k +++k+Wske+  +  + L++ G 
      CCG91351.1 196 YDKIRNRKRWSKEQIIQGIRSLKEKGI 222
                     7888899******99988888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       966  (0.0538792); expected 358.6 (0.02)
Passed bias filter:                      692  (0.0385967); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 1731.84
//
Query:       CCG91352.1  [L=369]
Description: Ligand-gated ion channel, periplasmic domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-36  125.1   0.0    3.4e-36  124.8   0.0    1.1  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    7.3e-14   51.5   8.1    7.3e-14   51.5   8.1    1.8  2  Ion_trans_2      Ion channel
    2.2e-12   47.0   0.3    3.6e-12   46.3   0.3    1.3  1  Lig_chan         Ligand-gated ion channel
      1e-08   34.7   3.9      1e-08   34.7   3.9    1.8  2  Ion_trans        Ion transport protein
    3.2e-08   33.8   0.0    1.6e-07   31.5   0.0    2.0  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine
  ------ inclusion threshold ------
        1.3    9.4   4.6        9.4    6.6   0.4    2.7  2  DUF1774          Fungal protein of unknown function (DUF1774)


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.0   1.1e-39   3.4e-36       1     221 [.      44     368 ..      44     369 .] 0.90

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 1.1e-39
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE.-.SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETT.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvp.v.swdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkd.. 95 
                 +rv++  + pPfs +  +ge++G+ vdl+k ia++l++ +ef++   + ++li +l ++kvD++++++ i+ e  +k++Fs+p++s+g+++++r ++  
  CCG91352.1  44 IRVAT-RNDPPFSVRGIDGEWEGIAVDLWKRIAADLNISYEFIEiPgDQQALIRSLLDKKVDVVVTGMGINIELLKKLAFSYPFLSSGLGVAYR-SSpi 140
                 79***.599**********************************95379**********************************************.556* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
   SBP_bac_3  96 ................................................................................................... 95 
                                                                                                                    
  CCG91352.1 141 sslqavyrfmlnpefavvvcgmtlltliagffvwiferkknphfggsfihgignafwwaavtmttigygdkvpktvggrtvamvwmfvgvvllsfftaw 239
                 *************************************************************************************************** PP

                 ..........SHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCE CS
                 ..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  96 ..........askissiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplss 184
                           +    +i +l+dL++ +++++++s  +++lk+   ++++++ fdtl++al+aLk+++vdav+ +   l+y+++k+ +++++++e+++  
  CCG91352.1 240 itagvalekvS---LDIIKLKDLSQIRIAAVKNSMGSSYLKK---RQIRATLFDTLNSALEALKEKKVDAVLSELEQLRYVIQKDFGGELEVSEKTFVR 332
                 *******7653...4455566********************9...689999***********************************9999995666666 PP

                 CEEEEEEETTTHHHHHHHHHHHHHHHHTTHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 185 eeyaiavrkgdseLrkainkalaelkadgtlakisek 221
                  +ya+a+r+g+ e ++ ++ ++ +  ++ ++++ +ek
  CCG91352.1 333 IDYAFAFRPGE-EILQLVDTWMISHLNELKISENHEK 368
                 66666666655.5556666666555555555555555 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.5       3.4     1e+04       3      13 ..      18      28 ..      14      35 .. 0.49
   2 !   51.5   8.1   2.4e-17   7.3e-14       2      73 ..     162     240 ..     160     245 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.4
                 HHHTCHHHHHH CS
  Ion_trans_2  3 lllvlifgavi 13
                 l++++ f  ++
   CCG91352.1 18 LFFFFSFHLLF 28
                 33333333333 PP

  == domain 2  score: 51.5 bits;  conditional E-value: 2.4e-17
                  HHHHTCHHHHHHHHT.............T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   2 vlllvlifgaviysl.........eegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavl 73 
                  ++ll+li+g+++ ++         +  +  + + +a++++ vt+tTiGYGd vp+t +gr +++v++++G++l+++f+a +
   CCG91352.1 162 MTLLTLIAGFFVWIFerkknphfgG--SFIHGIGNAFWWAAVTMTTIGYGDKVPKTVGGRTVAMVWMFVGVVLLSFFTAWI 240
                  5677777777777778988874432..44578899*****************************************99866 PP

>> Lig_chan  Ligand-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.3   1.2e-15   3.6e-12       8     114 ..     162     261 ..     157     326 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 1.2e-15
                 XXTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHH.HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    Lig_chan   8 vlvalilvsivlflverfspyewrepeeaaetveneftlsnslwfslgalvqqG.cdesprsvsgRivvavWwffvlillssYtAnLaafltvermqtp 105
                 + ++ ++ +++++++er ++  + ++          + + n++w +  +++  G +d+ p++v gR v++vW+f+ ++lls +tA ++a + +e++   
  CCG91352.1 162 MTLLTLIAGFFVWIFERKKNPHFGGS--------FIHGIGNAFWWAAVTMTTIGyGDKVPKTVGGRTVAMVWMFVGVVLLSFFTAWITAGVALEKVSLD 252
                 556778999**************999........7899****************99******************************************* PP

                 -SSCCHHHT CS
                 xxxxxxxxx RF
    Lig_chan 106 iksledLak 114
                 i +l+dL++
  CCG91352.1 253 IIKLKDLSQ 261
                 ******975 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.21   6.4e+02     133     148 ..      13      28 ..       7      63 .. 0.80
   2 !   34.7   3.9   3.4e-12     1e-08     138     235 ..     162     242 ..     122     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHHH CS
   Ion_trans 133 vlllllvvlfifalig 148
                  ll +l+++f f l++
  CCG91352.1  13 ALLSCLFFFFSFHLLF 28 
                 5666777777777665 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 3.4e-12
                 HHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 138 lvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviad 235
                 + +l + a ++v +f           ++++np++g +  + +++a++w+ ++mtt+g+gd +++t +++      +++++ ++++++ll+ + a i+ 
  CCG91352.1 162 MTLLTLIAGFFVWIF-----------ERKKNPHFGGSFIHGIGNAFWWAAVTMTTIGYGDKVPKTVGGR------TVAMVWMFVGVVLLSFFTAWITA 242
                 334444444445555...........4679***************************************......***************99999876 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   5.3e-11   1.6e-07       3     112 ..      44     136 ..      42     139 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 5.3e-11
                      EEEE--.BTTTBEES..S---GGGGEESHHHHHHHHHHHHHT-EEEEEE-TT-----BETTTTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTS CS
  Lig_chan-Glu_bd   3 lkvttileePyvmlkkeeelegneryeGfcidLlkelakklgfkYelklvedgkyGskkekkkewnGmigellekkadlavapltitaeReevv 96 
                      ++v+t ++ P+ +    +  +g  ++eG ++dL k++a+ l+++Ye+ + +++    +  +      +i++ll+kk+d++v+ + i+ e  + +
       CCG91352.1  44 IRVATRNDPPFSV----RGIDG--EWEGIAVDLWKRIAADLNISYEFIEIPGD----Q--Q-----ALIRSLLDKKVDVVVTGMGINIELLKKL 120
                      6889999999988....34444..7**********************998853....3..3.....49************************** PP

                      EEESESEEE-EEEEEE CS
  Lig_chan-Glu_bd  97 dFtkpfmelgisilik 112
                       F+ pf+++g+ + ++
       CCG91352.1 121 AFSYPFLSSGLGVAYR 136
                      **********999887 PP

>> DUF1774  Fungal protein of unknown function (DUF1774)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.4    0.0031       9.4      26      68 ..     119     161 ..     105     180 .. 0.82
   2 ?    3.6   0.4     0.028        84      25      61 ..     231     267 ..     219     293 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0031
     DUF1774  26 tlgfslslLslalgvgQlltkvialQwifafviaavlfvlslv 68 
                  l+fs  +Ls +lgv+  ++ + +lQ ++ f++   + v+   
  CCG91352.1 119 KLAFSYPFLSSGLGVAYRSSPISSLQAVYRFMLNPEFAVVVCG 161
                 6899***************************997766665444 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.028
     DUF1774  25 ytlgfslslLslalgvgQlltkvialQwifafviaav 61 
                 + l+f +++++++++++ ++  +i+l  ++   iaav
  CCG91352.1 231 VLLSFFTAWITAGVALEKVSLDIIKLKDLSQIRIAAV 267
                 578999*******************998888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2657.95
//
Query:       CCG91353.1  [L=108]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.18   11.3   1.4       0.48    9.9   0.4    1.9  2  E1-E2_ATPase  E1-E2 ATPase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.4   2.7e-05      0.48     110     144 ..       4      38 ..       1      65 [. 0.84
   2 ?    2.2   0.1    0.0062   1.1e+02      99     151 ..      38      95 ..      35     107 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 2.7e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSST CS
  E1-E2_ATPase 110 plqkkldklgkvlvpvvlliallvflialllgksl 144
                    l+k ld l+ +   ++llia++++l+++++g s 
    CCG91353.1   4 ALKKSLDHLAHWSRRISLLIAIATLLYWIVIGFSE 38 
                   6899*************************998764 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.0062
                   TTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.....HHHHHH CS
  E1-E2_ATPase  99 rlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.....eallra 151
                   +l+ +a+ ++t++   l  ++ +l +v+ ++++l+  + l+l++  +       ll++
    CCG91353.1  38 ELILRASGSETEFSSALIGFFTFLGLVANFFGILFGGLSLSLKEMFRpscivGFLLNG 95 
                   6777888888999999999999999999999999888888888777766666444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 751.76
//
Query:       CCG91354.1  [L=298]
Description: 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-30  106.4   0.0      2e-30  106.0   0.0    1.1  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    5.8e-16   58.8   0.0    1.2e-15   57.9   0.0    1.5  1  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
    9.3e-10   39.0   0.1    6.6e-09   36.2   0.0    2.2  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    1.1e-06   28.7   0.0    2.1e-06   27.8   0.0    1.4  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
    0.00063   19.1   0.0    0.00094   18.6   0.0    1.2  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
  ------ inclusion threshold ------
      0.021   14.4   0.0      0.031   13.8   0.0    1.3  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.0   6.7e-34     2e-30       1     152 [.       2     156 ..       2     174 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 6.7e-34
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS...HCCC--TT-EEEE-S--- CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg...llealkkgdilidgstss 93 
                    kigfiG+G+MG +ma+nll++g ++ ++nrtkek++ l+a gak++  ++e+++s dvvitm+ +++a  e++ g   +++ l k+ i + +st+s
     CCG91354.1   2 KIGFIGTGKMGYPMAQNLLASGKELFIFNRTKEKADPLAAFGAKILGCPKEVATSSDVVITMLANDEALLEITAGsegIIHGLPKEGIHLSMSTVS 97 
                    79***********************************************************************99999****************** PP

                    HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEE CS
  NAD_binding_2  94 pedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigak 152
                    p+  +e+++  ++k+  ++ aPV G    A++ +L i+ +G+ ea+++++++++a+g+ 
     CCG91354.1  98 PKVIQEIQRMHAAKNQILVSAPVFGRPDAAARKELWIITAGPLEAVRKCHSIFQALGRG 156
                    ********************************************************984 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   3.9e-19   1.2e-15       3     118 ..     167     282 ..     165     286 .. 0.94

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 3.9e-19
  NAD_binding_11   3 GqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvlsrdfdpgFaldlmlKDlglalelareagaplpllal 97 
                     ++ vK++ n+l+ + + a+sE + la++a + p+ +l ++n+++ rs   en+ + +v +   +pgF+l+l  KD  la +l+++ ++plp l +
      CCG91354.1 167 ANIVKILGNFLIMTVIEALSESFCLAQRAKILPQDFLSAVNQALFRSPLYENYGQLIVKKAFREPGFTLQLGFKDATLARDLVQSYRVPLPYLDV 261
                     688************************************************99986666666689****************************** PP

  NAD_binding_11  98 aeqlyaaaaaegggdaDhsai 118
                     +   + +a ++g++d D++ai
      CCG91354.1 262 VYWRFLSALNHGKADLDFAAI 282
                     ******************998 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   2.2e-12   6.6e-09       1      67 [.       2      62 ..       2      68 .. 0.93
   2 ?   -0.0   0.0      0.46   1.4e+03      80      94 ..     103     118 ..      78     155 .. 0.63

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.2e-12
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvl 67
                   kig+iG+G+mg  +a++lla+g   +e+ +  +r++eka+ la ++g+k+ +   +e+a+++dvv+ 
     CCG91354.1  2 KIGFIGTGKMGYPMAQNLLASG---KELFIF-NRTKEKADPLA-AFGAKILG-CPKEVATSSDVVIT 62
                   7*********************...999967.**********5.6799****.999*********95 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.46
                    HC.GHHHHTTSEEEEE CS
  F420_oxidored  80 el.akdalkgklvisv 94 
                    e+ + +a k+++++s+
     CCG91354.1 103 EIqRMHAAKNQILVSA 118
                    3322234555555543 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0     7e-10   2.1e-06      14      91 ..       2      72 ..       1      82 [. 0.84

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 7e-10
                  EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB- CS
  Shikimate_DH 14 kvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisataseepile 91
                  k+  iG+G+m+  +a++Lla+g + ++++NRt e+a+ la    ++      l   ke+  ++dvvi+  a  e++le
    CCG91354.1  2 KIGFIGTGKMGYPMAQNLLASGKE-LFIFNRTKEKADPLAAFG-AK-----ILGCPKEVATSSDVVITMLANDEALLE 72
                  6889***************99987.**************8644.33.....566667888899999998888888775 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.2e-07   0.00094      38     100 ..       2      65 ..       1      73 [. 0.89

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.2e-07
                   EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHHHH-SEEEE-S- CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv.sleellaesDivslhlp 100
                   ++G iG+G++G  +a+ l a g ++++++r+k+k +  ++ g++     +e+  +sD+v+ +l 
    CCG91354.1   2 KIGFIGTGKMGYPMAQNLLASGKELFIFNRTKEKADPLAAFGAKILgCPKEVATSSDVVITMLA 65 
                   79*******************************99999*****998567899999999987665 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     1e-05     0.031       6      75 ..       2      72 ..       1     103 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1e-05
                -EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEE.E-S-HHHHHH CS
        IlvN  6 kiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvm.iliPDelqke 75
                ki  iG G  G   a+nl  sg ++ + +r+++k    A   +      +e+++++dvv+ +l+ De+  e
  CCG91354.1  2 KIGFIGTGKMGYPMAQNLLASGKELFIFNRTKEKADPLAAFGAKILGCPKEVATSSDVVItMLANDEALLE 72
                7999**************************99987777776666667889*******87626677776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1991.31
//
Query:       CCG91355.1  [L=1063]
Description: Cation/multidrug efflux pump [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.4e-199  663.1   1.7   7.3e-199  662.9   1.7    1.0  1  ACR_tran  AcrB/AcrD/AcrF family
    7.5e-05   21.8  20.2     0.0021   17.1   4.8    2.6  2  MMPL      MMPL family


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  662.9   1.7  8.1e-203  7.3e-199       2    1020 ..       5    1054 ..       4    1055 .. 0.94

  Alignments for each domain:
  == domain 1  score: 662.9 bits;  conditional E-value: 8.1e-203
                  HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS.-TTEEEEEEEETTSEEEEEEEESTTS CS
    ACR_tran    2 ikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalng.ldglkyvsSqSseglssitltFedgt 97  
                  +k+++++p +++v+a +i ++G l i  +P d +P+i+ p v+v   y G+ pe +++ +t+  E +l++ +d++  ++S + +gl  i + F+ g 
  CCG91355.1    5 VKVALRKPYTVAVMAALIFVMGLLTIETTPTDIFPDIDIPVVNVVWFYQGLTPEDMTNFITTFSEFNLSQyVDNVARMESRTYYGLNVIRMYFQPGV 101 
                  6899****************************************************************9769************************* PP

                  -HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHHH CS
    ACR_tran   98 didiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkla 194 
                  +id A  +     q + + +P + ++p +   ++++ ++++lav+ k  + ++ +l d+     +++L+ + G +     Gg  + +r+ + p++l 
  CCG91355.1  102 PIDLAVSEAVSICQTVIKRMPLGTTPPYVLRYSAAEVPVIQLAVSGK--TKSNADLFDYTWYIFRRELATIRGATFPPPWGGTARFIRVDAYPDQLL 196 
                  ***********************************************..999********************************************* PP

                  CTT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEEETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEEEEEETTSB CS
    ACR_tran  195 klgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivknqdgskvrlrDvAkVelgaeeerlaatfngkpavllevkklpgan 291 
                  + g+t++++++ +++q  + a+G ++  ++ +l+++++  ++++++++i +k+ +g+ v+++D++ V +g + ++++a++ng pav++   k   a 
  CCG91355.1  197 ARGITAQELMEVINNQVLDYASGDIKIGDRDYLVSVNNVPTNVQEMNDIPIKKVNGQIVYMHDLGYVRDGGAVQWNFARYNGIPAVIMPLLKNGMAS 293 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHH CS
    ACR_tran  292 aievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNlltL 388 
                  ++e + + k+ l+  k+s Peg+ei+ ++d++ fvras+e Vvk+ l+a+ L  +++++FL+++r+tli+++++Pl +l+++ +l+ +g ++N +tL
  CCG91355.1  294 TLELVANLKKLLPIAKASAPEGIEIKELMDQSVFVRASVEGVVKEGLIAAGLTGIMILVFLGSWRSTLIVLTSIPLCILVALFILSRMGNTINIMTL 390 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
    ACR_tran  389 fgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltltPal 485 
                  +gL+lA+G++vDdA V vEni+r+ ++ g++  +a+l ++++i+ a    +l++++vf  ++fl+G    lf ++al +v+++l s++++ tl+P +
  CCG91355.1  391 GGLALAVGILVDDATVEVENIHRNHGM-GKPLIQAILDGAQQIANAAFVATLSICIVFTSVIFLEGPPKYLFTPMALGVVFSMLFSYFLSRTLVPTM 486 
                  ***************************.9999***************************************************************** PP

                  HHHHS---STT-CT............SHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STT CS
    ACR_tran  486 callLkerkeekek............kffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppg 570 
                  + +l+++++  ++k            +f ++f + fe    +Y++ll++ l+h+  v l++ +l  +s++ +++++++f+P  d g++ ++v +ppg
  CCG91355.1  487 ANMLIRQEEIIEHKrkiegkpisrfmRFHHWFMERFEEFRDNYGELLKWALHHKGAVFLLFGILGFASFVALPFVGENFFPPVDAGKFRLHVFTPPG 583 
                  *******99888888899*******99********************************************************************** PP

                  B-HHHHHHHHHHHHHHHHT....TTTEEEEEEEE........CECS.SE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHC.TTSTSSEEE CS
    ACR_tran  571 vsleqtqkvlkqvekilke....kpevesvfavt........Gfae.sgdtagpnsakvfisLkpekerkeeeksvealierlrkel.kkipganve 653 
                  + le t+++ +++e+++k+    ++e++s++  +        G+a+ +  ++g + +++ +sLk  +      +s +a ++++r++l +k+pg + +
  CCG91355.1  584 TRLETTARIFSEIEEYIKKeivpEEEIDSIVDLGglpfwfpaGMAFgDYINEGTFDGEILVSLKEDH------HSTFAYMKKIREKLpRKFPGCE-F 673 
                  ***************9995244458999998765111111125678778899999********9766......68***********96799**99.7 PP

                  EEETTSSCCCSSSSCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEE.. CS
    ACR_tran  654 llapiqlreletlsgvrselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyv.. 748 
                  +++p+++  +    g+ + ++ +++g+d +  s+ a+++++++k++++++dv   +q++qp+l+++idr +a ++G++  +i + + + l++syv  
  CCG91355.1  674 FFQPPDMVNQILNFGSAAPIDIQVVGKDPDITSRFAKEIQKKVKKIKGAADVTI-YQKKQPYLHLKIDRIRALDFGLNQREIANNILNQLSSSYVva 769 
                  889999999999999999999999****************************87.7889*********************************99833 PP

                  .EEEE..ETTEEEEEEEEE-GGGSSSGGGGCCSEEEETTSC..........EEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHH CS
    ACR_tran  749 .ndfi..eegrrvkvvvrleedlrsspedlkklkvrnkkgk..........mvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeea 832 
                   n     +   ++ vvv+ +++l  s + l ++ +   k+              ls+v+++e+++ +  ++++n ++   +  nv+ +d+ + + ++
  CCG91355.1  770 pNYWAdpKTTINYPVVVQTPQHLIDSHNSLLNINLHPIKEYysdllasreeTQLLSNVVSVEHTQKAAVVSHYNVKPIYNVFVNVQGRDLGGVVHDV 866 
                  23333114445699*******998877777666665444434457777777889**************************************99988 PP

                  HHHHC..TT..SSTTEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHH CS
    ACR_tran  833 vekia..kkvklpegvtiewtgqaeqeqeasnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliG 927 
                  ++ i+  kk +lp+ ++i+  gqae+ q+a ++l + ++ a+l+v+++L + ++ +++p++il+ +P ++ G +  l+l+g+++sv ++ G+i+++G
  CCG91355.1  867 QKVINsvKK-ELPPAYEIHIRGQAESMQNAFGRLGLGIVFAILMVYFLLVVNFQGWVDPFIILMALPAGFCGVIWMLYLTGTTFSVPSLMGMIMTVG 962 
                  887752144.7************************************************************************************** PP

                  HHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  928 lavkNaillvefakelrekegksleeaileaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlv 1020
                  +a  N ill++fa+e+++ +g +   a+ +a++ RLrP+LMTa a+ilG+lP+ l+ g+G e   plg +v+gG++ +t+ tL++vPv++ ++
  CCG91355.1  963 VATSNSILLITFANEEMR-NGADALTAAWMAGRIRLRPVLMTAGAMILGMLPMSLGLGEGGEQNAPLGRAVIGGMIFATIGTLFFVPVVFSII 1054
                  ******************.9999999****************************************************************987 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   7.4   4.4e-05      0.39     150     317 ..     340     512 ..     327     524 .. 0.81
   2 !   17.1   4.8   2.3e-07    0.0021     107     300 ..     866    1052 ..     808    1061 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 4.4e-05
        MMPL 150 vvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastg 248
                 ++++ +  ++ l+ ++S    l++l ++ + +l+al +  +     g +++ ++lg   +l++++ +D a   v  ++   + g+   +a+ +  ++++
  CCG91355.1 340 LIAAGLTGIMILVFLGSWRSTLIVLTSIPLCILVALFI--LS--RMGNTINIMTLG-GLALAVGILVDDATVEVENIHRNHGMGKPLIQAILDGAQQIA 433
                 56666667888888999999999999999999999888..22..223333333333.456777788899999*************************** PP

        MMPL 249 kvvtaaGltvaiamlgLvvarlp...vlaqvGvaialGvlvdvlivlTllPAllvllGraa.lakprrkrkk......r 317
                 ++ + a+l ++i + +  +++ p    ++ +++ +  ++l++ ++++Tl+P ++ +l r    ++ +rk ++      +
  CCG91355.1 434 NAAFVATLSICIVFTSVIFLEGPpkyLFTPMALGVVFSMLFSYFLSRTLVPTMANMLIRQEeIIEHKRKIEGkpisrfM 512
                 ****************99998765557999999999************************9999999999885555441 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2.3e-07
        MMPL  107 vaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfv 203 
                  v+++ + v++   +   ++++ G+a  ++     +   l+l +v +++++  +L++ ++  v ++++l+       a +  v i+ l l  +  ++ 
  CCG91355.1  866 VQKVINSVKKEL-PPAYEIHIRGQAESMQN----AFGRLGLGIVFAILMVYFLLVVNFQGWVDPFIILMALP----AGFCGV-IWMLYLTGTTFSVP 952 
                  444444455555.77888999998877777....56679999999999999999999***999999886544....444443.55555433333333 PP

        MMPL  204 lgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvva...rlpvlaqvGvaialGvlvdvlivlTllPA 297 
                    + ++++++v+t   +lL++   ee+++g d+ +a+  a +   + v++ +  +++ ml +++      +  a +G a+  G+++++  +l ++P 
  CCG91355.1  953 SLMGMIMTVGVATSNSILLITFANEEMRNGADALTAAWMAGRIRLRPVLMTAGAMILGMLPMSLGlgeGGEQNAPLGRAVIGGMIFATIGTLFFVPV 1049
                  34579999*************************9999999887777666666667778888876411134455568999999999999999988887 PP

        MMPL  298 llv 300 
                  + +
  CCG91355.1 1050 VFS 1052
                  765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1063 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1032  (0.0575604); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.47
# Mc/sec: 6764.16
//
Query:       CCG91356.1  [L=470]
Description: Membrane-fusion protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-22   77.6   0.7    1.3e-21   76.9   0.7    1.3  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
      3e-07   30.1   0.4    9.3e-06   25.4   0.0    3.0  3  Biotin_lipoyl_2  Biotin-lipoyl like
    7.1e-07   29.9   2.3    1.2e-06   29.2   0.3    2.4  3  HlyD_3           HlyD family secretion protein
  ------ inclusion threshold ------
      0.025   14.4   0.1       0.17   11.7   0.0    2.4  2  Biotin_lipoyl    Biotin-requiring enzyme
      0.083   12.9   0.0       0.19   11.7   0.0    1.6  1  Castor_Poll_mid  Castor and Pollux, part of voltage-gated ion


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.7   3.5e-25   1.3e-21      22     214 .]     147     363 ..     144     363 .. 0.84

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 3.5e-25
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......................XXXXXXXX........XXXXXXXXXXXXX CS
    HlyD_D23  22 vsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalk.......................akkklkkke.......lleaarerLrllg 90 
                 + arv+G++++  v+ +gd+Vk+Gq +a +++p++ +   e   +lk                       a               + +a  + L  ++
  CCG91356.1 147 IWARVNGYIKNWWVD-IGDEVKEGQLMAVIDAPDIDRQVLEMEGVLKsaeanleiarisldrwkeliktrA-------VsqqqldeRQAAYDAALARVN 237
                 679************.********************99999988888666777777777777777764431.......033335545566667777777 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  91 vseeqiaelektgkvqktvtvkapisGvVteknvreGqyvqpgd.....tlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyi 184
                  s+ q +++   ++ q+  +++ap+sGvVt++n+  G  v+ g+     +l++i+  + + v+++v+++ +++++ g+ ++vt + lpgk f+G v   
  CCG91356.1 238 ASRGQYEHW---KELQNFEKIYAPFSGVVTARNIDIGTLVSLGSdkgvrELYRISVTDVMRVYVAVPQNYAPQIQLGAWADVTASELPGKIFKGLVVRT 333
                 777776665...56666667********************8875333337************************************************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 185 yptvdpetRtvkvRieldNpdgkLkpgmfA 214
                 +  vdp +Rt+   +++ Np+g++  +m++
  CCG91356.1 334 SKAVDPLSRTLLTEVDVGNPNGEIIVNMYV 363
                 ****************************97 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.6e-09   9.3e-06       4      47 ..     146     189 ..     144     199 .. 0.85
   2 ?   -1.0   0.1      0.46   1.6e+03      36      47 ..     227     238 ..     222     241 .. 0.86
   3 ?    0.7   0.0      0.14   4.9e+02       5      24 ..     255     274 ..     254     277 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.6e-09
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaea 47 
                      +I a+v+G ++ + V  G++Vk+G++ a++D ++ + ++  +e+
       CCG91356.1 146 PIWARVNGYIKNWWVDIGDEVKEGQLMAVIDAPDIDRQVLEMEG 189
                      6889*******************************988877443 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.46
  Biotin_lipoyl_2  36 ralqlalaqaea 47 
                       a+++ala+++a
       CCG91356.1 227 AAYDAALARVNA 238
                      6899*****998 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.14
  Biotin_lipoyl_2   5 IaapvsGrVaqlnVkdGqrV 24 
                      I ap+sG+V++ n+  G  V
       CCG91356.1 255 IYAPFSGVVTARNIDIGTLV 274
                      789*******9888877666 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.9   3.2e+03       4      33 ..     149     178 ..     147     188 .. 0.85
   2 !   29.2   0.3   3.2e-10   1.2e-06       1      97 [.     254     354 ..     254     367 .. 0.93
   3 ?   -4.0   0.0         5   1.8e+04      16      32 ..     431     447 ..     427     450 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.9
      HlyD_3   4 ApvdGvvvelnveegevvqagdelleiipp 33 
                 A v G ++ + v  g+ v +g+ ++ i  p
  CCG91356.1 149 ARVNGYIKNWWVDIGDEVKEGQLMAVIDAP 178
                 788999999999999999999999998665 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 3.2e-10
      HlyD_3   1 tlrApvdGvvvelnveegevvqagde.....lleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktgaykvevsle 94 
                 +++Ap++Gvv++ n+  g  v+ g       l +i  +d + v+++vp+ ++++i+  g+ ++++++  +++  kg ++r s  vd+ ++++  ev++ 
  CCG91356.1 254 KIYAPFSGVVTARNIDIGTLVSLGSDkgvreLYRISVTDVMRVYVAVPQNYAPQIQ-LGAWADVTASELPGKIFKGLVVRTSKAVDPLSRTLLTEVDVG 351
                 589*******************999999999999999******************6.99999**99999999**************9999999999888 PP

      HlyD_3  95 npe 97 
                 np+
  CCG91356.1 352 NPN 354
                 874 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 5
      HlyD_3  16 eegevvqagdelleiip 32 
                 ++ e++++gd+++ + +
  CCG91356.1 431 NPPEILEEGDKVVVVDD 447
                 66788888998887765 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.8e-05      0.17      15      37 ..     153     176 ..     144     184 .. 0.75
   2 ?   -1.8   0.0      0.79   2.8e+03      45      67 ..     255     277 ..     253     278 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.8e-05
                    ..ECSESSSTTCEE-TTSEEEEEE CS
  Biotin_lipoyl  15 g.vvevlvkvGdkVkagqvlaeve 37 
                    g + ++ v  Gd+Vk+gq +a++ 
     CCG91356.1 153 GyIKNWWVDIGDEVKEGQLMAVID 176
                    556778888888888888888776 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.79
                    EEBSSSEEEEEESSTTTEEE-TT CS
  Biotin_lipoyl  45 ieapkaGvvkeilvkeGdtvevg 67 
                    i ap +Gvv+   ++ G+ v+ g
     CCG91356.1 255 IYAPFSGVVTARNIDIGTLVSLG 277
                    78999999998777777777655 PP

>> Castor_Poll_mid  Castor and Pollux, part of voltage-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.4e-05      0.19      56      93 ..     418     451 ..     387     461 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.4e-05
  Castor_Poll_mid  56 vviGikvassgkiylnPeddevlqegdkllviaedddt 93 
                      ++ G+  +++ ki+lnP   e+l+egdk++v+ + ++ 
       CCG91356.1 418 IPSGL--SKDQKIILNPP--EILEEGDKVVVVDDLSKP 451
                      67788..7778******8..6**********9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3616.74
//
Query:       CCG91357.1  [L=116]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 806.02
//
Query:       CCG91358.1  [L=76]
Description: hypothetical protein MFUM_1020083 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 599.05
//
Query:       CCG91359.1  [L=319]
Description: 2-dehydropantoate 2-reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-31  108.9   0.0    3.8e-31  107.8   0.0    1.6  2  ApbA           Ketopantoate reductase PanE/ApbA
    1.2e-22   80.5   0.0    1.7e-22   80.0   0.0    1.2  1  ApbA_C         Ketopantoate reductase PanE/ApbA C terminal
      0.002   18.0   0.1     0.0058   16.5   0.0    1.8  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
  ------ inclusion threshold ------
      0.041   14.5   0.2       0.22   12.1   0.0    2.3  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.045   13.0   0.0      0.073   12.3   0.0    1.3  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.056   12.8   0.1       0.16   11.3   0.0    1.7  2  ThiF           ThiF family
      0.071   12.3   0.0       0.17   11.1   0.0    1.6  2  FAD_binding_3  FAD binding domain
      0.085   13.4   0.1       0.35   11.5   0.1    2.1  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   0.0   1.7e-34   3.8e-31       1     151 [.      15     163 ..      15     164 .. 0.98
   2 ?   -3.9   0.0       4.3   9.7e+03      21      43 ..     278     299 ..     274     301 .. 0.78

  Alignments for each domain:
  == domain 1  score: 107.8 bits;  conditional E-value: 1.7e-34
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETT.CEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEEE CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseg.geeilrppealsaeekselepidlvivtvKayqteealeeikplldpntvv 98 
                 ia++GaGaiGs++++ Lakag+dv ++ r++ +e +k++Gl ++  + + ++l+p ++++++   +++p+ +vi+++K+  ++   e + pll ++tv 
  CCG91359.1  15 IAVIGAGAIGSFYGGLLAKAGYDVNFLMRKD-YEIVKEKGLLIEWGKeKTFQLYPVKVYTNT--NQIGPCKWVIISLKTSANDILFELLPPLLSSETVL 110
                 89*****************************.**************999999***9999999..999******************************** PP

                 EEESSSSCHHHHHTTTSTTSEEEEEEEE-EEEEEETTEEEECS--EEEEEESS CS
        ApbA  99 lllqNGlgheeelrealpkprvlggvtthgatregpgevhhagkgeikigela 151
                 +++qNG+++e+ l e ++ ++++gg+ +++++r+gpg+v   g g++++g+++
  CCG91359.1 111 VCFQNGIENEKWLYENFGPRTIIGGILFVCINRTGPGKVTNFGFGKVELGQYN 163
                 **************************************************976 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4.3
                 THCEEEE-SCHHHHHHHHHCEEE CS
        ApbA  21 gadvtlilrsrrlealkknGlrl 43 
                   +v  i+ ++ l++ +++Gl+l
  CCG91359.1 278 PLEVEAIWGRP-LKKAREKGLEL 299
                 56788899999.99999999976 PP

>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   7.5e-26   1.7e-22       2     122 ..     190     310 ..     189     313 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 7.5e-26
      ApbA_C   2 irlarweKllinaainpltalld.ckngellespelralvrallkEalavaeaegvelseerleeaveavlektaanrsSMlqDveagrktEidyinGa 99 
                 +++arw+Kl++n+ +n+l++ ++ ++++ +l++pel+  +r+l++E+++ a+a+g +++ + + e+    ++k+   ++S l D ++++++E+++i G 
  CCG91359.1 190 LEEARWKKLVWNIPFNGLSVAAGgVDVAVILDKPELALAARELMQEIIKAAKALGFSITND-FIETQLFRTKKMGHYKPSSLFDFLEHKPLEVEAIWGR 287
                 6789***************98875999****************************999999.888888888889999********************** PP

      ApbA_C 100 vvklAeklgvetPvnellyellk 122
                 ++k A++ g+e+P++++ly++l 
  CCG91359.1 288 PLKKAREKGLELPRLQQLYAILD 310
                 ********************986 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.6e-06    0.0058       1      37 [.      14      50 ..      14      76 .. 0.85
   2 ?   -2.0   0.0       1.3   2.9e+03      18      52 ..     209     243 ..     207     260 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.6e-06
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealek 37
                k+aviGaG +G+    ++a+ag++V+ + +++  + k
  CCG91359.1 14 KIAVIGAGAIGSFYGGLLAKAGYDVNFLMRKDYEIVK 50
                69************************98877655544 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
                 HHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTT CS
     3HCDH_N  18 fasagleVvlvdiseealekalekieksleklvek 52 
                 +a+ g++V ++  ++e + +a+e +++ ++ +++ 
  CCG91359.1 209 VAAGGVDVAVILDKPELALAARELMQEIIKAAKAL 243
                 56778888888888888888888888777766554 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.8e-05      0.22       1      32 [.      14      45 ..      14      76 .. 0.88
   2 ?   -1.6   0.0       1.9   4.2e+03      13      34 ..     172     193 ..     172     198 .. 0.80
   3 ?   -2.6   0.0       3.9   8.8e+03      22      48 ..     213     235 ..     210     247 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.8e-05
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversd 32
                k++v+G+G ig  ++g la+ g +V  + r+d
  CCG91359.1 14 KIAVIGAGAIGSFYGGLLAKAGYDVNFLMRKD 45
                79***********************9888887 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.9
                 HHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox  13 ElAgalaelgkkVtvversdkl 34 
                 ++A++l++ g ++ +v   ++ 
  CCG91359.1 172 DFATMLSAAGIETEIVNSLEEA 193
                 5899999999999999887765 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.9
                 TSEEEEEESSSSSSTTSSHHHHHHHHH CS
   Pyr_redox  22 gkkVtvversdkllrllDeeaskilqe 48 
                 g +V v+  +++l      +a++++qe
  CCG91359.1 213 GVDVAVILDKPELA----LAARELMQE 235
                 55666776676666....333333433 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.2e-05     0.073     141     175 ..      12      45 ..       2      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.2e-05
                  -TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 141 lpkrivvvGgGyiGvElAaalaklgkevtlveard 175
                  +  +i+v+G+G+iG+ + + lak+g++v  + + d
   CCG91359.1  12 K-GKIAVIGAGAIGSFYGGLLAKAGYDVNFLMRKD 45 
                  3.59***********************98776655 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.4e-05      0.16      14      41 ..       8      35 ..       2      42 .. 0.86
   2 ?   -2.4   0.0       1.1   2.5e+03     193     209 ..     225     241 ..     203     276 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.4e-05
                HHHHTSEEEEE--SHHHHHHHHHHHHHT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 14 ekLrdskvllvGaGglGsellknLalsG 41
                e   + k++++GaG++Gs+   +La++G
  CCG91359.1  8 EHPDKGKIAVIGAGAIGSFYGGLLAKAG 35
                556679**************99999999 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxx RF
        ThiF 193 tavvaglaalellklls 209
                 +a++a  +++e++k+ +
  CCG91359.1 225 LALAARELMQEIIKAAK 241
                 56666666666666652 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.5e-05      0.17       3      45 ..      14      56 ..      12      65 .. 0.90
   2 ?   -2.3   0.0       0.9     2e+03      17      35 ..     174     192 ..     173     194 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.5e-05
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EE CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradgl 45
                   +++++GaG  G   + lL++aG +v  + + + ++v+ ++  +
     CCG91359.1 14 KIAVIGAGAIGSFYGGLLAKAGYDVNFLMRKDYEIVKEKGLLI 56
                   578***********************99999999998888766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.9
                    HHHHHHTTHHEEEEESSSS CS
  FAD_binding_3  17 allLseaGvrvvlvekrst 35 
                    a++Ls aG+++ +v+  ++
     CCG91359.1 174 ATMLSAAGIETEIVNSLEE 192
                    789********99998765 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00016      0.35       1      89 [.      14     108 ..      14     116 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC...........-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHH CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg...........vkvtavdneeaaeeadvvvlavkpedveevlselakda 85 
                    ki++iGaG +g+     l++ag   +++ +  +++ e ++e    ++           vkv +  n   +  +++v++++k+++ + + + l + +
     CCG91359.1  14 KIAVIGAGAIGSFYGGLLAKAG---YDVNFLMRKDYEIVKEKGLLIEwgkektfqlypVKVYT--NTNQIGPCKWVIISLKTSANDILFELLPPLL 104
                    7*********************...77765544444433332222225555666665566666..6666666888888888777666666664444 PP

                    HTTS CS
  F420_oxidored  86 lkgk 89 
                    ++++
     CCG91359.1 105 SSET 108
                    4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2338.28
//
Query:       CCG91360.1  [L=158]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1284.00
//
Query:       CCG91361.1  [L=836]
Description: Chaperone protein ClpB [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-55  186.8   0.2    2.4e-52  177.5   0.0    2.8  2  AAA_2            AAA domain (Cdc48 subfamily)
      2e-34  117.6   2.8    2.3e-34  117.4   1.1    2.1  2  AAA_lid_9        AAA lid domain
    6.5e-33  112.6   7.3    1.9e-17   63.1   1.0    2.9  2  Clp_N            Clp amino terminal domain, pathogenicity isl
    1.2e-24   86.1   1.0    1.2e-24   86.1   1.0    2.4  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    2.8e-23   82.8   3.1    1.1e-12   48.6   0.1    3.2  2  AAA              ATPase family associated with various cellul
    2.8e-15   56.5   0.1    1.4e-10   41.3   0.0    3.2  2  AAA_5            AAA domain (dynein-related subfamily)
    2.8e-14   53.8   1.7    2.2e-06   28.2   0.0    4.5  4  AAA_16           AAA ATPase domain
    5.1e-11   42.6   0.0    2.7e-06   27.2   0.0    2.7  2  Sigma54_activat  Sigma-54 interaction domain
    2.1e-10   41.0   1.1      0.022   15.0   0.0    5.6  4  AAA_22           AAA domain
    8.9e-08   31.8   0.1     0.0014   18.1   0.1    3.5  2  TniB             Bacterial TniB protein
    2.5e-07   30.8   0.3      0.022   14.8   0.0    2.9  2  AAA_14           AAA domain
    3.1e-07   29.9   8.3      1e-06   28.3   8.3    2.0  1  UVR              UvrB/uvrC motif
    2.1e-06   27.8   0.1      0.013   15.4   0.0    2.7  2  NACHT            NACHT domain
    3.1e-06   26.8   0.1      0.065   12.7   0.0    2.7  2  AAA_7            P-loop containing dynein motor region
    9.9e-06   25.4   0.1       0.17   11.6   0.0    2.5  2  IstB_IS21        IstB-like ATP binding protein
    5.8e-05   23.1   0.0       0.32   10.9   0.0    2.7  2  RsgA_GTPase      RsgA GTPase
      6e-05   23.4   0.0       0.75   10.2   0.0    3.1  3  RNA_helicase     RNA helicase
    6.5e-05   22.9   0.0       0.25   11.3   0.0    2.8  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00011   21.7   0.8       0.16   11.4   0.2    4.0  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00013   22.2   0.0       0.88    9.8   0.0    2.6  2  Roc              Ras of Complex, Roc, domain of DAPkinase
    0.00025   21.1   1.2       0.11   12.5   0.0    3.9  3  ResIII           Type III restriction enzyme, res subunit
    0.00047   19.9   6.3       0.41   10.4   0.0    5.2  4  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00082   19.9   4.2        1.5    9.4   0.0    3.8  3  AAA_18           AAA domain
     0.0017   18.0   0.1       0.91    9.1   0.0    3.0  2  AAA_25           AAA domain
     0.0017   18.2   0.0        2.7    7.8   0.0    3.2  3  DNA_pol3_delta2  DNA polymerase III, delta subunit
     0.0024   17.6   0.1       0.66    9.7   0.0    3.1  2  AAA_24           AAA domain
     0.0036   17.8   0.1        2.4    8.7   0.0    2.9  2  ABC_tran         ABC transporter
      0.004   17.3   0.7        2.1    8.5   0.0    3.6  3  AAA_33           AAA domain
     0.0041   16.1   0.4       0.19   10.6   0.0    2.7  2  AAA_10           AAA-like domain
     0.0042   17.0   0.1       0.62    9.9   0.0    3.2  2  AAA_3            ATPase family associated with various cellul
     0.0057   16.6  19.0      0.078   12.9   0.0    5.1  5  ATPase_2         ATPase domain predominantly from Archaea
     0.0068   16.1   0.0        0.6    9.8   0.0    3.2  2  AAA_30           AAA domain
      0.007   15.5   0.1       0.19   10.9   0.0    2.9  2  DUF815           Protein of unknown function (DUF815)
     0.0081   15.4   0.0        3.9    6.6   0.0    2.9  2  NB-ARC           NB-ARC domain
     0.0084   16.0   0.0        1.6    8.5   0.0    2.9  2  Bac_DnaA         Bacterial dnaA  protein
  ------ inclusion threshold ------
      0.013   15.9   0.3       0.28   11.6   0.0    3.0  2  DUF3837          Domain of unknown function (DUF3837)
      0.022   15.0   0.6        5.5    7.2   0.0    3.2  2  AAA_28           AAA domain
      0.024   14.1   0.0        7.3    6.0   0.0    3.0  2  PhoH             PhoH-like protein
      0.032   13.3   0.3       0.31   10.1   0.1    2.4  2  T2SSE            Type II/IV secretion system protein
      0.047   13.8   0.0       0.25   11.5   0.0    2.2  2  Torsin           Torsin
      0.063   13.0   0.1        9.6    5.9   0.0    3.2  3  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.072   13.2   3.4         27    4.8   0.0    4.0  4  DUF87            Helicase HerA, central domain
      0.074   12.7   0.1         13    5.3   0.1    2.6  2  SRP54            SRP54-type protein, GTPase domain
       0.22   11.6   0.5         29    4.7   0.1    3.5  3  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
       0.28   11.5   1.2        3.7    7.9   0.1    2.9  2  AAA_19           AAA domain
        6.6    7.3   8.1       0.34   11.4   0.4    3.0  1  PP2C_C           Protein serine/threonine phosphatase 2C, C-t
        8.5    6.8  15.3         20    5.6   0.3    3.4  2  AAA_23           AAA domain
        9.5    6.0   8.6         18    5.1   0.0    2.8  2  Endonuc_Holl     Endonuclease related to archaeal Holliday ju


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.025       9.3       6      83 ..     218     301 ..     213     316 .. 0.81
   2 !  177.5   0.0   6.3e-55   2.4e-52       1     170 [.     550     721 ..     550     722 .. 0.97

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.025
                 EEEE--TTSSHHHHHHHHHHHTT-..........-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG---- CS
       AAA_2   6 illlgptgvGktelakalaellfv......kkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpk 83 
                   l+g+ gvGkt + + la+ +         ++k++i++d   +  + + +   ++ i a    ++++++ i+++DE+  i   
  CCG91361.1 218 PVLIGEAGVGKTAIVEGLAQEIANenvpdlLRDKRVITLDLALMVAGTKYRGQFEERIKAVMEEIRKAKNIILFIDELHTIVGA 301
                 57899********8888888887666777767788888898888889999999999999999999999999******9887764 PP

  == domain 2  score: 177.5 bits;  conditional E-value: 6.3e-55
                 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG-------- CS
       AAA_2   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessg 87 
                 rpi+s+++lgptgvGkt+lak+lae+ f ++ ++li +d+se++e    +  vsrlig+ppgyvg+eegG            +vl+DEi+K+hp     
  CCG91361.1 550 RPIGSFIFLGPTGVGKTMLAKTLAEYVF-GSADALIQIDMSEYME----KFNVSRLIGSPPGYVGYEEGGqltekirrrpysVVLFDEIEKAHP----- 638
                 699*************************.9***************....*********************************************..... PP

                 -----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-S......TTTTSGGG--HHHHHHTT--HHHHTT--E CS
       AAA_2  88 advSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrsk......eeeeekkkeeveeelkkglipEllgRlpe 170
                       +V ++LLqile+g +td+ grk+d++n+++Imt+++g++   +    +      e ++e++ke++ e +kk+++pE+l+R+++
  CCG91361.1 639 ------DVWNILLQILEDGIVTDSLGRKIDFRNTIIIMTSNVGAEMGLKPGVLGfrtkqdEISYEQMKERMLETVKKTFKPEFLNRVDD 721
                 ......****************************************9996666699999999************************985 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   1.1   6.2e-37   2.3e-34       1     103 [.     357     459 ..     357     462 .. 0.98
   2 ?   -1.2   0.1       5.3     2e+03      67      89 ..     460     482 ..     453     492 .. 0.48

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 6.2e-37
   AAA_lid_9   1 seeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeeekekaer 99 
                 s+eeti+iL+glk+kye+hH+ k++d+a+++av+lS+rY+++rflPdkAID++Dea+ar+r++ + +p el++le+el +++ +k++ +k++++eka+ 
  CCG91361.1 357 SVEETIQILHGLKPKYEAHHKAKFTDQAIDTAVRLSDRYLTGRFLPDKAIDIMDEAGARARIAATMRPPELKDLENELLAIRAKKDECIKAQNFEKAAA 455
                 689**********************************************************************************************99 PP

   AAA_lid_9 100 lkel 103
                 l+++
  CCG91361.1 456 LRDK 459
                 9876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 5.3
   AAA_lid_9  67 kpeeleklekelaklekekeale 89 
                 ++e  ekle+++a+ +k++++ e
  CCG91361.1 460 ERELKEKLEQRIAEWKKRRDEKE 482
                 23334455565555555444433 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.7   1.4e-16   5.2e-14       1      53 []      15      67 ..      15      67 .. 0.96
   2 !   63.1   1.0   5.1e-20   1.9e-17       1      52 [.      92     143 ..      92     144 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 1.4e-16
                HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHHC CS
       Clp_N  1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekllg 53
                A ++A ++gh++++tEHLLl+L++  +G+a ++L+k+Gvdl+++r +iek +g
  CCG91361.1 15 ARQEAERFGHNHVGTEHLLLGLIKLAQGVAINVLQKLGVDLETVRIEIEKKIG 67
                789**********************************************9765 PP

  == domain 2  score: 63.1 bits;  conditional E-value: 5.1e-20
                 HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHH CS
       Clp_N   1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekll 52 
                 A ++Ak+l+h+y++tEH+Ll+Ll+e++G+aa +Lk++ +dl+++r++i k+l
  CCG91361.1  92 ASKEAKALNHSYVGTEHILLGLLREGEGVAATILKNLDIDLERVRNEILKEL 143
                 679**********************************************998 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   1.0   3.2e-27   1.2e-24       1      80 [.     728     807 ..     728     808 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 3.2e-27
                    SCHHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSEEE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtvr 80 
                    Lt+e++ kIv+l+++k+++rlk+r++++ +td+a+d+l+ekgy+p+yGARpLrr++++++e+++aee+l+g+l+e + v+
     CCG91361.1 728 LTREDMIKIVHLEVNKVAERLKSRKLSILLTDAAIDFLIEKGYEPAYGARPLRRAVEKYVENAIAEELLKGKLAEATVVE 807
                    89************************************************************************988876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.1   2.8e-15   1.1e-12       2     112 ..     219     334 ..     218     353 .. 0.75
   2 !   33.4   0.0   1.4e-10   5.2e-08       2     110 ..     556     673 ..     555     685 .. 0.80

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 2.8e-15
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 +l+G  G+GKT++++ +a+e+          + ++++++++ ++   ky g+ e++i+++++e+++ +   ilfiDE++ ++++    + e ++++ n 
  CCG91361.1 219 VLIGEAGVGKTAIVEGLAQEIanenvpdllrDKRVITLDLALMVagTKYRGQFEERIKAVMEEIRKAK-NIILFIDELHTIVGAG---SAEGAMDASNI 313
                 599*****************7544333333335577777766665577****************9997.8***************...77888888888 PP

                 HHHHHHHTTTSSSTEEEEEEESS..G CS
         AAA  89 Llteldgvkkkeskvivigatnr..p 112
                 + ++l++ +       +igat+   +
  CCG91361.1 314 IKPALSRGEL-----QCIGATTLseY 334
                 8888888777.....47888876442 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 1.4e-10
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeer 84 
                 ++ Gp G+GKT+lak +a+ +      +++i++se ++k            yvg  e    +l +++++   p s++++DEi++ +++           
  CCG91361.1 556 IFLGPTGVGKTMLAKTLAEYVfgsADALIQIDMSEYMEKfnvsrligsppgYVGYEEGG--QLTEKIRRR--PySVVLFDEIEKAHPDV---------- 640
                 789*****************754346689999999998899999999999988866653..455555554..559**********9998.......... PP

                 HHHHHHHHHHHTTTS........SSTEEEEEEES CS
         AAA  85 vvnqLlteldgvkkk........eskvivigatn 110
                   n Ll+ l++             +++i+i+++n
  CCG91361.1 641 -WNILLQILEDGIVTdslgrkidFRNTIIIMTSN 673
                 .999999998877666788888755578888877 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00063      0.23       3      75 ..     219     296 ..     217     301 .. 0.66
   2 !   41.3   0.0   3.7e-13   1.4e-10       2     122 ..     555     674 ..     554     683 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00063
                 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--...........--------..G-SEEEEESGG CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik..ngttslvdsplvraar..egeilvlDEve 75 
                 +L+G+ G+gK+ ++e la+ + n +v   +  ++  + dl   +  +   g+ + + +++++++r  +  il++DE++
  CCG91361.1 219 VLIGEAGVGKTAIVEGLAQEIaNENVPDLLRDKRVITLDLALMVAGTkyRGQFEERIKAVMEEIRkaKNIILFIDELH 296
                 79*****************99877776666666555555544444334455555555566666664444466666665 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 3.7e-13
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--............--------..G-SEEEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreik...ngttslvdsplvraar..egeilvlDEveraesevlnsLlslleer 92 
                 ++ +Gp+G+gK++la+ la+ +    + +  + +++++++ ++   +      +     + + l++++r    +++++DE+e+a+++v n+Ll++le+ 
  CCG91361.1 555 FIFLGPTGVGKTMLAKTLAEYVfgsADALIQIDMSEYMEKFNVSRLI--GsppGYVGYEEGGQLTEKIRrrPYSVVLFDEIEKAHPDVWNILLQILEDG 651
                 799*******************9655566666666666666665555..4454445555668999999998889************************* PP

                 EEE..-SSSEEE---......-EEEEEESS CS
       AAA_5  93 rllleeggelvkaknddllerfrviatanp 122
                  +  +++g+ ++++n      + +i+t+n 
  CCG91361.1 652 IVT-DSLGRKIDFRN------TIIIMTSNV 674
                 999.99*******99......899999996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   5.9e-09   2.2e-06       2      51 ..     196     242 ..     195     311 .. 0.84
   2 ?   -1.6   0.1       8.4   3.2e+03      53     104 ..     434     481 ..     416     502 .. 0.55
   3 !   19.2   0.0   3.3e-06    0.0012       2      49 ..     524     577 ..     523     603 .. 0.86
   4 ?   -1.0   0.0       5.3     2e+03     135     159 ..     623     648 ..     614     656 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 5.9e-09
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 ++GR++e+e++ ++l+r  ++ p   +l+Ge+GvGK+++v+ l++++  +
  CCG91361.1 196 VIGRKNEIERVMQILCRRTKNNP---VLIGEAGVGKTAIVEGLAQEIANE 242
                 78**************9888876...899**************9999877 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 8.4
      AAA_16  53 giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleea 104
                  +++r+k d++ +a     + +a+a  +  + +l e+ ++  ++w+++ +e 
  CCG91361.1 434 LLAIRAKKDECIKAQN---FEKAAAL-RDKERELKEKLEQRIAEWKKRRDEK 481
                 4556777777722222...3333322.3333333333333455555555444 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 3.3e-06
      AAA_16   2 lvGReeeleqLlsalervrsgrp......elvllsGesGvGKsslvrellrale 49 
                 ++G +e +e+L +al+r r++        ++ ++ G+ GvGK+ l+++l++++ 
  CCG91361.1 524 VIGQDEAIEALSRALQRSRADLKdpkrpiGSFIFLGPTGVGKTMLAKTLAEYVF 577
                 789*************777665555999*********************98765 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 5.3
      AAA_16 135 rp.lvlvlDdlqwadeaslqllaaLl 159
                 rp  v+++D++++a ++ +++l ++l
  CCG91361.1 623 RPySVVLFDEIEKAHPDVWNILLQIL 648
                 44589************999955444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00025     0.093       2     105 ..     197     298 ..     196     305 .. 0.82
   2 !   27.2   0.0   7.3e-09   2.7e-06      23     131 ..     553     663 ..     524     681 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00025
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTS CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgG 95 
                      ig++++++++++ + +   t+ + ++ Ge G+GK+ + + + ++  +++ p +  +   i+ +l         +G F    k+ +  ++ka++ 
       CCG91361.1 197 IGRKNEIERVMQILCRR--TKNNPVLIGEAGVGKTAIVEGLAQEIANENVPDLLRDKRVITLDLALMVAGTKYRGQFEERIKAVMEEIRKAKNI 288
                      56666666666665544..33444566******************99999999999999998888776666779******************** PP

                      EEEEETGGGS CS
  Sigma54_activat  96 tlfLDeigel 105
                      +lf+De++++
       CCG91361.1 289 ILFIDELHTI 298
                      ******9986 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 7.3e-09
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQekLl 114
                       s + +G +G+GK++la+++ e    ++  +++++++++ e+   s+L G   G + G e+  +   ++++   +++++Dei++  +++ + Ll
       CCG91361.1 553 GSFIFLGPTGVGKTMLAKTLAEYVFGSADALIQIDMSEYMEKFNVSRLIGSPPG-YVGYEEGGQltEKIRRRPYSVVLFDEIEKAHPDVWNILL 645
                      567889********************************************9998.8888877665688999999******************** PP

                      HHHHHSEEE.SBTSSSEE CS
  Sigma54_activat 115 rvlqegeve.rvGsskei 131
                      ++l++g v+  +G +   
       CCG91361.1 646 QILEDGIVTdSLGRKIDF 663
                      *****9986246655443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.9e-05     0.022       4     102 ..     214     297 ..     211     326 .. 0.65
   2 ?    2.0   0.0      0.61   2.3e+02      27      82 ..     339     388 ..     328     438 .. 0.69
   3 !   12.0   0.0   0.00052      0.19       7      27 ..     554     574 ..     550     587 .. 0.90
   4 ?    2.6   0.0       0.4   1.5e+02      81     118 ..     615     650 ..     610     673 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.9e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaq 101
                 t++  v++Ge+G+GKT  ++ l+++  +e+ ++  ++++v++ +l+     ++               +r++ ee ++a+ + +r+++   +l iDE +
  CCG91361.1 214 TKNNPVLIGEAGVGKTAIVEGLAQEIANENVPDLlRDKRVITLDLALMVAGTK---------------YRGQFEERIKAVMEEIRKAKN-IILFIDELH 296
                 778889******************98544333335555555444433332222...............234555555555555555555.566666655 PP

      AAA_22 102 h 102
                  
  CCG91361.1 297 T 297
                 5 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.61
      AAA_22  27 eqldeeakaee.....erpevvfvtlpsstsskdllrellralglelkaerlsseelleal 82 
                 e         +     +r ++v+v++ps ++  ++l+ l  +++  +ka  + +++ +++ 
  CCG91361.1 339 E---------KdaaleRRFQTVLVEAPSVEETIQILHGLKPKYEAHHKA--KFTDQAIDTA 388
                 2.........122335899*********************999988888..3333333333 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00052
      AAA_22   7 ilvvtGesGtGKTtllrrlle 27 
                 + +  G++G+GKT+l+++l+e
  CCG91361.1 554 SFIFLGPTGVGKTMLAKTLAE 574
                 56778*************986 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.4
      AAA_22  81 aleqalraravielliiDEaqhlrseealeeLrsllnl 118
                 +l++ +r+r   ++++ DE+++  ++++++ L ++l++
  CCG91361.1 615 QLTEKIRRRPY-SVVLFDEIEKA-HPDVWNILLQILED 650
                 67888899999.9**********.9******9988875 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   3.8e-06    0.0014      33     183 ..     213     352 ..     199     356 .. 0.75
   2 ?    4.8   0.0     0.043        16      11      54 ..     525     571 ..     519     577 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.8e-06
        TniB  33 krmpnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleqqvlrllrelkvrvLiiDEihnl 131
                    +n +l+G+  +GKt+ive  a++  +e+             +p+   +kr  +  L+ + a +k r + ++  ++v++ +r+ k  +L iDE+h +
  CCG91361.1 213 RTKNNPVLIGEAGVGKTAIVEGLAQEIANEN-------------VPDLLRDKRVITLDLALMVAGTKYRGQFEERIKAVMEEIRKAKNIILFIDELHTI 298
                 4446666677777777777766655444333.............344444555555556677777888999999999*********************9 PP

        TniB 132 l.agsarkqreflnalksLgnelkipivlvGt.eealralrtDpqlasRFepia 183
                 + agsa+    + n++k    + ++  +++ t  e  + +++D+ l++RF+++ 
  CCG91361.1 299 VgAGSAEGAMDASNIIKPALSRGELQCIGATTlSEYRKYIEKDAALERRFQTVL 352
                 7589999**********9999999999999883466789***********9875 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.043
        TniB  11 igyprakeiler.LeeL.leypkrkrm.pnlllvGdsnnGKtmivek 54 
                 ig ++a e+l+r L++   +  + kr+  + +++G++ +GKtm+++ 
  CCG91361.1 525 IGQDEAIEALSRaLQRSrADLKDPKRPiGSFIFLGPTGVGKTMLAKT 571
                 5555555544431332202223334433789999**********986 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.9e-05     0.022       6      77 ..     219     304 ..     215     360 .. 0.76
   2 !   13.0   0.0   0.00021     0.079       6      90 ..     556     651 ..     553     663 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.9e-05
      AAA_14   6 vitGaRrvGKTtllkqlikell.......vkkesilyinldderd.kkla.dpekllelileklkeekktylflDEiqev.....p 77 
                 v+ G   vGKT +++ l++e          ++++++ ++l      +k++ ++e+ +++++e++++ k+ +lf+DE + +      
  CCG91361.1 219 VLIGEAGVGKTAIVEGLAQEIAnenvpdlLRDKRVITLDLALMVAgTKYRgQFEERIKAVMEEIRKAKNIILFIDELHTIvgagsA 304
                 5778889*******999988778888998888999999988866553444477788899999987779999*******99444440 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00021
      AAA_14   6 vitGaRrvGKTtllkqlikellvkkesilyinldderd....kkladpe...............kllelileklkeekktylflDEiqev.pewekalk 84 
                 +  G+  vGKT+l+k+l++  + +++  + i++ +  +    +     +               +l e i++    +  +++++DEi ++ p+++++l 
  CCG91361.1 556 IFLGPTGVGKTMLAKTLAEYVFGSADALIQIDMSEYMEkfnvS-----RligsppgyvgyeeggQLTEKIRR----RPYSVVLFDEIEKAhPDVWNILL 645
                 567999************8888788888888888865532220.....122333333333222233333333....34457******987588989888 PP

      AAA_14  85 slvdeg 90 
                 +++++g
  CCG91361.1 646 QILEDG 651
                 888877 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   8.3   2.7e-09     1e-06       2      35 ..     432     465 ..     431     466 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 2.7e-09
         UVR   2 klikeLeeemeeAaenedFEkAAklRDqinalkk 35 
                 +++  ++++++e++++++FEkAA lRD++++lk+
  CCG91361.1 432 NELLAIRAKKDECIKAQNFEKAAALRDKERELKE 465
                 777889**************************98 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.4e-05     0.013       4      31 ..     219     246 ..     218     305 .. 0.91
   2 !    9.3   0.0    0.0026      0.97       4      22 ..     556     574 ..     554     580 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.4e-05
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpq 31 
                 +l GeaG+GKT+ +++la+++a ++ p 
  CCG91361.1 219 VLIGEAGVGKTAIVEGLAQEIANENVPD 246
                 689*******************999876 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0026
                 EEEC-TTTCHHHHHHHHHH CS
       NACHT   4 ilqGeaGsGKTtLlqklal 22 
                 i  G+ G+GKT+L++ la+
  CCG91361.1 556 IFLGPTGVGKTMLAKTLAE 574
                 678************9985 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00018     0.065      25      62 ..     206     244 ..     200     299 .. 0.72
   2 !   11.0   0.0   0.00061      0.23      36      83 ..     555     602 ..     552     604 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00018
       AAA_7  25 llelllkn.kkpvllvGptGtGKtviikdllkkldkeky 62 
                 +++ l+++ k++ +l+G++G+GKt+i++ l +++ +e++
  CCG91361.1 206 VMQILCRRtKNNPVLIGEAGVGKTAIVEGLAQEIANENV 244
                 566655541567799***************999997765 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00061
       AAA_7  36 vllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiie 83 
                 +++ GptG+GKt+++k+l + +  +    ++i +s +++  ++ ++i 
  CCG91361.1 555 FIFLGPTGVGKTMLAKTLAEYVFGSADALIQIDMSEYMEKFNVSRLIG 602
                 689**************9999998999999999999999888888775 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00067      0.25      45      76 ..     213     244 ..     197     318 .. 0.70
   2 !   11.6   0.0   0.00046      0.17      50      70 ..     555     575 ..     550     603 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00067
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavragl 76 
                 ++k+n vl+G +GvGK+ +   l++e +++++
  CCG91361.1 213 RTKNNPVLIGEAGVGKTAIVEGLAQEIANENV 244
                 6899**************99999999877664 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00046
   IstB_IS21  50 ivllGpsGvGKshlaialgve 70 
                 +++lGp+GvGK+ la +l+  
  CCG91361.1 555 FIFLGPTGVGKTMLAKTLAEY 575
                 799*************99975 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00086      0.32      83     123 ..     199     239 ..     173     263 .. 0.79
   2 !    9.2   0.0    0.0027         1      75     121 ..     527     574 ..     481     589 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00086
                  -TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  83 saktkegleelkellkdktsvlvGqSGvGKStLinallpel 123
                  ++++ e + ++  + +++  vl+G+ GvGK+++++ l++e 
   CCG91361.1 199 RKNEIERVMQILCRRTKNNPVLIGEAGVGKTAIVEGLAQEI 239
                  45555555555556667788***************999875 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0027
                  TTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  75 lgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallp 121
                   + ++ ++s   +++ ++lk+  +     +++G++GvGK+ L ++l++
   CCG91361.1 527 QDEAIEALSRALQRSRADLKDPKRPiGSFIFLGPTGVGKTMLAKTLAE 574
                  555556666666667777777777767889************999975 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0042       1.6       3      26 ..     220     243 ..     219     270 .. 0.84
   2 !   10.2   0.0     0.002      0.75       2      24 ..     556     578 ..     555     597 .. 0.86
   3 ?   -1.4   0.0       8.1     3e+03      93     107 .]     660     674 ..     651     674 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0042
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l G++g+GK+ +++ La++++++ 
    CCG91361.1 220 LIGEAGVGKTAIVEGLAQEIANEN 243
                   78******************9765 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.002
  RNA_helicase   2 wlyGpsgeGKStlakeLakallk 24 
                   ++ Gp+g+GK++lak+La+ + +
    CCG91361.1 556 IFLGPTGVGKTMLAKTLAEYVFG 578
                   689**************998765 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 8.1
  RNA_helicase  93 gtlftSkvvivtsNv 107
                   ++ f+  ++i+tsNv
    CCG91361.1 660 KIDFRNTIIIMTSNV 674
                   3789999*******6 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00067      0.25       5      46 ..     201     242 ..     197     245 .. 0.81
   2 !    8.4   0.0    0.0055       2.1       5      42 ..     529     575 ..     525     584 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00067
                 HHHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE   5 eetealgkklakalgdvilLeGdLGaGKTtlvrglakalgve 46 
                 +e+e++ + l + +++  +L G+ G+GKT++v gla+++  e
  CCG91361.1 201 NEIERVMQILCRRTKNNPVLIGEAGVGKTAIVEGLAQEIANE 242
                 6677777777777788899******************98655 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0055
                 HHHHHHHHHHHHCHTEE.........EEEEESTTSSHHHHHHHHHHH CS
        TsaE   5 eetealgkklakalgdv.........ilLeGdLGaGKTtlvrglaka 42 
                 e++eal ++l+++ +d+         +++ G+ G+GKT+l++ la+ 
  CCG91361.1 529 EAIEALSRALQRSRADLkdpkrpigsFIFLGPTGVGKTMLAKTLAEY 575
                 566777777766553334445566778899*************9986 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.067        25      12      53 ..     204     246 ..     192     300 .. 0.73
   2 !   11.4   0.2   0.00042      0.16      25      44 ..     555     574 ..     552     680 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.067
  Mg_chelatase  12 kralei.aaaGgHnlllvGppGsGKtmlakrlpsllpplseee 53 
                   +r+++i +   + n +l+G +G GKt + + l++ +++ +  +
    CCG91361.1 204 ERVMQIlCRRTKNNPVLIGEAGVGKTAIVEGLAQEIANENVPD 246
                   4555552344566789999999999999988877666555555 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00042
  Mg_chelatase  25 lllvGppGsGKtmlakrlps 44 
                   ++++Gp G GKtmlak l++
    CCG91361.1 555 FIFLGPTGVGKTMLAKTLAE 574
                   799*************9975 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0029       1.1       3      26 ..     219     242 ..     218     251 .. 0.87
   2 !    9.8   0.0    0.0024      0.88       3      38 ..     556     590 ..     554     600 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0029
                 EEESSTTSSHHHHHHCHCT-CCC- CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfse 26 
                 vl+G++gvGKt +++ + ++  +e
  CCG91361.1 219 VLIGEAGVGKTAIVEGLAQEIANE 242
                 79************9998876665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0024
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdflt 38 
                 +++G +gvGKt l+k + e  f +  ++ i++d+++
  CCG91361.1 556 IFLGPTGVGKTMLAKTLAEYVFGS-ADALIQIDMSE 590
                 79***************9988854.46777887765 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0       0.4   1.5e+02      13      51 ..     204     242 ..     192     255 .. 0.77
   2 ?    1.5   0.0      0.71   2.7e+02     126     149 ..     280     303 ..     263     320 .. 0.73
   3 !   12.5   0.0   0.00028      0.11       8      51 ..     527     579 ..     522     587 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.4
                 HHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S. CS
      ResIII  13 enlleklkskrdkrglikmaTGtGKTlvaaklierllkk 51 
                 e++++ l  + +++ ++  + G+GKT +   l+++++++
  CCG91361.1 204 ERVMQILCRRTKNNPVLIGEAGVGKTAIVEGLAQEIANE 242
                 444444443556677788999*******99999888875 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.71
                 .HHHTTT-SEEEEETGGGTTS.TT CS
      ResIII 126 eellrdrfdviiiDEaHrlgakks 149
                 ee ++ ++ +++iDE H + ++ s
  CCG91361.1 280 EEIRKAKNIILFIDELHTIVGAGS 303
                 56677778899******9988544 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00028
                 HHHHHHHHT...........TTS....EEEEEESTTSTHHHHHHHHHHHH-S. CS
      ResIII   8 Qeeaienlleklks.....krdk....rglikmaTGtGKTlvaaklierllkk 51 
                 Q eaie+l  +l+      k+ k     +++  +TG+GKT++a  l+e+++ +
  CCG91361.1 527 QDEAIEALSRALQRsradlKDPKrpigSFIFLGPTGVGKTMLAKTLAEYVFGS 579
                 899999999888877777733335567899*************9999999876 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.8      0.14        52      37      59 ..     219     241 ..     191     306 .. 0.62
   2 !   10.4   0.0    0.0011      0.41       9      55 ..     524     574 ..     518     584 .. 0.79
   3 ?    0.6   0.0       1.1     4e+02      85     113 ..     625     653 ..     614     671 .. 0.85
   4 ?    0.7   0.1         1   3.8e+02      57     121 ..     703     770 ..     693     788 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.14
      RuvB_N  37 llyGpPGlGkttlakiiakelgv 59 
                 +l+G  G+Gkt++ + +a+e+  
  CCG91361.1 219 VLIGEAGVGKTAIVEGLAQEIAN 241
                 45677777777766666666543 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0011
      RuvB_N   9 yigqekvkeklkifieaakkr....eealdhvllyGpPGlGkttlakiiak 55 
                  igq++  e l+ +++ +++     ++++   ++ Gp G+Gkt lak +a+
  CCG91361.1 524 VIGQDEAIEALSRALQRSRADlkdpKRPIGSFIFLGPTGVGKTMLAKTLAE 574
                 68999999999988887764311226788999***************9997 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 1.1
      RuvB_N  85 kdvlfideihrlsraveevlysamedfrl 113
                   v++ dei + ++ v ++l + +ed  +
  CCG91361.1 625 YSVVLFDEIEKAHPDVWNILLQILEDGIV 653
                 578899*******************9766 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 1
      RuvB_N  57 lgvklkitsgPv.lekagdlaalltnleekdvlfid..eihrlsrave.evlysamedfrldivigkGp 121
                 +  ++k t  P  l++  dl+ ++ +l+++d++ i   e+ ++++ ++   l   + d ++d +i+kG 
  CCG91361.1 703 MLETVKKTFKPEfLNRVDDLI-VFRSLTREDMIKIVhlEVNKVAERLKsRKLSILLTDAAIDFLIEKGY 770
                 556677777775256666665.67889999988774236666665544145777899*********996 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0099       3.7       3      67 ..     220     288 ..     219     309 .. 0.70
   2 ?    0.3   1.0       2.5   9.5e+02      69     125 ..     426     482 ..     391     487 .. 0.67
   3 !    9.4   0.0    0.0039       1.5       3      31 ..     557     582 ..     556     605 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0099
      AAA_18   3 ltGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpe.....aldeskrldedkldklldaleen 67 
                 l G +GvGKt + + L+++  +  +n+ d++++++  + + +      +++ + +++++ +++ +++ +++
  CCG91361.1 220 LIGEAGVGKTAIVEGLAQE--IaNENVPDLLRDKRVITLDLALmvagtKYRGQFEERIKAVMEEIRKAKNI 288
                 7899************888..44788888888888877777777755555555555555555555544444 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 2.5
      AAA_18  69 s.aleegknlvidghlaeleseaakdikkvvLtaspeelleRlekRgyeeakikenee 125
                 + +  e++ l i     e+++++++++    L+ ++ el+e le+R  e +k+++++e
  CCG91361.1 426 ElKDLENELLAIRAKKDECIKAQNFEKA-AALRDKERELKEKLEQRIAEWKKRRDEKE 482
                 3555666677777777788888888888.99999999999999999999888665555 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0039
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdv 31 
                   G+ GvGKt lak L++     + + d 
  CCG91361.1 557 FLGPTGVGKTMLAKTLAEYV---FGSADA 582
                 67**************9973...333333 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0024      0.91      37     102 ..     219     287 ..     197     315 .. 0.83
   2 ?    5.4   0.0     0.033        12      36      54 ..     555     573 ..     527     581 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0024
      AAA_25  37 llaGapgtGKttlaldlalava.tGkpwlg....pvapeqgkVlyvsaEdsedelrrRlravgealrddar 102
                 +l+G  g+GKt+++  la ++a +   +++    +++ +    l+v++   + ++++R++av+e++r  ++
  CCG91361.1 219 VLIGEAGVGKTAIVEGLAQEIAnEN--VPDllrdKRVITLDLALMVAGTKYRGQFEERIKAVMEEIRKAKN 287
                 699*******************544..45555876666899999999999999**********99965444 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.033
      AAA_25  36 allaGapgtGKttlaldla 54 
                  ++ G++g+GKt+la  la
  CCG91361.1 555 FIFLGPTGVGKTMLAKTLA 573
                 4667**********97776 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       7.1   2.7e+03      23      47 ..     219     243 ..     203     250 .. 0.81
   2 ?    6.4   0.0     0.018       6.8      20      47 ..     553     580 ..     505     597 .. 0.83
   3 !    7.8   0.0    0.0071       2.7      96     129 ..     617     650 ..     611     654 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 7.1
  DNA_pol3_delta2  23 LfeGdegigkkelalnlakallcee 47 
                      ++ G++g+gk ++   la+++  e+
       CCG91361.1 219 VLIGEAGVGKTAIVEGLAQEIANEN 243
                      5679999999999999999998887 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.018
  DNA_pol3_delta2  20 hayLfeGdegigkkelalnlakallcee 47 
                       +++f G++g+gk  la++la+ ++ + 
       CCG91361.1 553 GSFIFLGPTGVGKTMLAKTLAEYVFGSA 580
                      589*******************999765 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0071
  DNA_pol3_delta2  96 srkpreskkkiiiiedaekmtksAaNalLktlEE 129
                      ++k r   + +++ +++ek ++   N+lL++lE+
       CCG91361.1 617 TEKIRRRPYSVVLFDEIEKAHPDVWNILLQILED 650
                      5677788899***********************7 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.072        27       3      22 ..     216     235 ..     214     355 .. 0.88
   2 !    9.7   0.0    0.0018      0.66       7      81 ..     557     640 ..     554     651 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.072
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                 ++ +++G++g+GKT ++  l
  CCG91361.1 216 NNPVLIGEAGVGKTAIVEGL 235
                 56689*********988766 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0018
      AAA_24   7 iyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel....................aaeladyktlviDtideleelc 81 
                   Gp g+GKT+lak+l  + +f   ++ l ++d  ++          ++++                      +   ++y+++ +D i+++   +
  CCG91361.1 557 FLGPTGVGKTMLAKTL-AEYVFGSADA-LIQIDMSEYM---------EKFNVSrligsppgyvgyeeggqlteKIRRRPYSVVLFDEIEKAHPDV 640
                 57**************.7777776666.3344443332.........222222355555666666666666666667778888888887776655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.049        18      15      38 ..     219     242 ..     213     341 .. 0.82
   2 !    8.7   0.0    0.0065       2.4      16      35 ..     557     576 ..     553     613 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.049
                 EEEESTTSSHHHHHHHHTTSS--S CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagllkpt 38 
                 +++Ge G GK+ +++ la++  ++
  CCG91361.1 219 VLIGEAGVGKTAIVEGLAQEIANE 242
                 79*************999998765 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0065
                 EEESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagll 35 
                 ++G++G GK+ L+k+la+ +
  CCG91361.1 557 FLGPTGVGKTMLAKTLAEYV 576
                 79*************99765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.098        37       4      23 ..     220     239 ..     219     288 .. 0.87
   2 ?   -1.6   0.6       7.1   2.7e+03      85     127 ..     438     479 ..     430     492 .. 0.71
   3 !    8.5   0.0    0.0057       2.1       3      25 ..     556     575 ..     555     604 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.098
      AAA_33   4 lvGlpGsGKstlaerllkkl 23 
                 l+G +G+GK+  +e+l+++ 
  CCG91361.1 220 LIGEAGVGKTAIVEGLAQEI 239
                 79**************9875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 7.1
      AAA_33  85 rarflklarrlgvpvrivvvetdeetlkeRlakRaangddrse 127
                 ra++++  + ++++ ++ +++  e++lke+l++R a+ ++r +
  CCG91361.1 438 RAKKDECIKAQNFE-KAAALRDKERELKEKLEQRIAEWKKRRD 479
                 56666677777766.7777778889999999999887555444 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0057
      AAA_33   3 llvGlpGsGKstlaerllkklga 25 
                 ++ G+ G+GK+ la+ l+    +
  CCG91361.1 556 IFLGPTGVGKTMLAKTLA---EY 575
                 899*************99...44 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.16        59      17      75 ..     213     282 ..     206     305 .. 0.80
   2 !   10.6   0.0   0.00051      0.19      21      64 ..     552     595 ..     537     608 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.16
      AAA_10  17 sktnasasliiGdlGnGKSvlakllvlyisllg.............gkaliiDpkkerekfketlpeiakki 75 
                   +n++  ++iG+ G GK  ++  l   i+  +             + al++  +k r +f e++++++++i
  CCG91361.1 213 RTKNNP--VLIGEAGVGKTAIVEGLAQEIANENvpdllrdkrvitlDLALMVAGTKYRGQFEERIKAVMEEI 282
                 445666..99************99999998888888999988888888899999999999999997755554 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00051
      AAA_10  21 asasliiGdlGnGKSvlakllvlyisllggkaliiDpkkerekf 64 
                     +++G++G GK +lak+l  y+    + ++ iD  + +ekf
  CCG91361.1 552 IGSFIFLGPTGVGKTMLAKTLAEYVFGSADALIQIDMSEYMEKF 595
                 455699*******************9999999999988777776 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.56   2.1e+02       4      25 ..     220     241 ..     218     258 .. 0.87
   2 !    9.9   0.0    0.0016      0.62       8     110 ..     561     672 ..     555     682 .. 0.58

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.56
       AAA_3   4 legvPGlaktllvkalakaldl 25 
                 l g  G++kt +v+ la+ +  
  CCG91361.1 220 LIGEAGVGKTAIVEGLAQEIAN 241
                 56788************99865 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0016
       AAA_3   8 PGlaktllvkalakaldlef.kriqft.pdll....PsdilGt...evfeekekefefkkGpvfanllladeinrappktqsalleameerqvtve.ge 96 
                  G++kt+l+k+la+ +  +    iq+  ++ +     s ++G+    v  e+  +++ k      +++l dei++a p +   ll+++e+  vt + g+
  CCG91361.1 561 TGVGKTMLAKTLAEYVFGSAdALIQIDmSEYMekfnVSRLIGSppgYVGYEEGGQLTEKIRRRPYSVVLFDEIEKAHPDVWNILLQILEDGIVTDSlGR 659
                 6888888888888766443314455431222211114556665222232333344443333334689**********************9999865244 PP

       AAA_3  97 thklpepflvlatq 110
                 + ++ ++ + + t 
  CCG91361.1 660 KIDFRNTII-IMTS 672
                 445544444.4444 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1    0.0011      0.41       4      43 ..     199     238 ..     197     245 .. 0.87
   2 !   12.9   0.0   0.00021     0.078     101     201 ..     270     365 ..     246     391 .. 0.76
   3 ?   -1.3   1.2       4.6   1.7e+03      80     131 ..     441     494 ..     415     500 .. 0.69
   4 ?    3.3   0.0      0.17        64      24      42 ..     555     574 ..     528     584 .. 0.86
   5 ?   -2.2   0.4       8.2   3.1e+03      75     122 ..     708     756 ..     687     767 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0011
    ATPase_2   4 RekelkeleeilerepneiyfiYGpegsGKtaLlkeiien 43 
                 R++e++++ +il r +++  ++ G  g+GKta++  ++++
  CCG91361.1 199 RKNEIERVMQILCRRTKNNPVLIGEAGVGKTAIVEGLAQE 238
                 99*********999999999999*********99877665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00021
    ATPase_2 101 lvfkaielllekikkkgkkiiiiiDelqklidlglngaellvkeLlnliesltkekhlcvviclsSeglfiervyneselegrhkyilvddldketaln 199
                 + ++ i++++e+i+k  k ii++iDel  ++  g  +ae  + +  n+i+  +++ +l  +i ++  +  ++++++ + le r +++lv+    e++ +
  CCG91361.1 270 QFEERIKAVMEEIRKA-KNIILFIDELHTIV--GAGSAEGAM-DASNIIKPALSRGEL-QCIGATTLSEYRKYIEKDAALERRFQTVLVEAPSVEETIQ 363
                 5678899999999877.88************..655445444.456666665555554.5678888899999999999999999998888766666665 PP

    ATPase_2 200 fl 201
                 +l
  CCG91361.1 364 IL 365
                 55 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 4.6
    ATPase_2  80 kalgiavpkaeleeilkeksklvfkaielllekikkkgkk..iiiiiDelqkli 131
                 k   i+ +++e  + l +k +++++++e+ +++ kk++ +    i  D++ +++
  CCG91361.1 441 KDECIKAQNFEKAAALRDKERELKEKLEQRIAEWKKRRDEkeTTITEDDMMQIV 494
                 333334444444444668888889999999988888876666899999999887 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.17
    ATPase_2  24 fiY.GpegsGKtaLlkeiie 42 
                 fi+ Gp g+GKt L k ++e
  CCG91361.1 555 FIFlGPTGVGKTMLAKTLAE 574
                 4544***********99876 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 8.2
    ATPase_2  75 kkklekalgiavpkaeleeilk..eksklvfkaielllekikkkgkkiii 122
                 kk ++  ++++v    + + l   + +k v   ++++ e +k ++  i +
  CCG91361.1 708 KKTFKPEFLNRVDDLIVFRSLTreDMIKIVHLEVNKVAERLKSRKLSI-L 756
                 333333333444443333333334667888888888888888876544.3 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0016       0.6      15      46 ..     212     243 ..     201     267 .. 0.75
   2 ?    2.2   0.0      0.33   1.2e+02      22      41 ..     556     575 ..     553     589 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0016
      AAA_30  15 tsgdrvavltGpAGtGKttalkalreaweaag 46 
                   ++   vl G AG GKt ++++l++ +++++
  CCG91361.1 212 RRTKNNPVLIGEAGVGKTAIVEGLAQEIANEN 243
                 555556799***************88777765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.33
      AAA_30  22 vltGpAGtGKttalkalrea 41 
                 +  Gp G GKt++ k+l+e 
  CCG91361.1 556 IFLGPTGVGKTMLAKTLAEY 575
                 567***********999886 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0    0.0005      0.19      44      82 ..     206     258 ..     188     297 .. 0.66
   2 ?    0.8   0.0      0.58   2.2e+02      56      91 ..     555     590 ..     503     603 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0005
      DUF815  44 teqfleglpannvLLwGarGtGKSslvkallneyaeeg..............L 82 
                 + q l  ++ nn +L+G+ G+GK ++v  l +e+a+e+              L
  CCG91361.1 206 VMQILCRRTKNNPVLIGEAGVGKTAIVEGLAQEIANENvpdllrdkrvitldL 258
                 455566677799999********************998777655544444443 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.58
      DUF815  56 vLLwGarGtGKSslvkallneyaeegLrlieveked 91 
                  ++ G  G+GK  l k+l + +  +  +li+++ ++
  CCG91361.1 555 FIFLGPTGVGKTMLAKTLAEYVFGSADALIQIDMSE 590
                 678899*************99999999999998765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0      0.01       3.9       2      41 ..     200     236 ..     199     244 .. 0.75
   2 ?    5.4   0.0     0.024       8.8      25      69 ..     557     598 ..     531     605 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.01
                 HHHHHHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHC CS
      NB-ARC   2 eksvekviekLlekdelqslvvalvGmgGvGKttlakqil 41 
                 ++++e+v++ L +  + +     l G +GvGKt +++   
  CCG91361.1 200 KNEIERVMQILCRRTKNN---PVLIGEAGVGKTAIVEGLA 236
                 678999999999855555...4689********9876544 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.024
                 EEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEESXXHHHHHH CS
      NB-ARC  25 lvGmgGvGKttlakqilnksdevegrFdsvawvvvsktdkseeil 69 
                 + G  GvGKt lak   +    v g  d ++++ +s+ +++ ++ 
  CCG91361.1 557 FLGPTGVGKTMLAKTLAEY---VFGSADALIQIDMSEYMEKFNVS 598
                 57***********998776...78888888888888777666665 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0044       1.6      29      71 ..     213     257 ..     194     306 .. 0.57
   2 ?    4.1   0.0     0.099        37      30      62 ..     548     580 ..     528     598 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0044
                 STTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHS.....SSS-EEEEE CS
    Bac_DnaA  29 apgkkynPlfiygevGlGktHLlkaignevlena.....pelrvvYlt 71 
                  +  k nP++i ge G+Gkt +++ +++e+ +++     +++rv+ l 
  CCG91361.1 213 RT--KNNPVLI-GEAGVGKTAIVEGLAQEIANENvpdllRDKRVITLD 257
                 33..569*998.***********9999988765422222456666555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.099
                 TTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHS CS
    Bac_DnaA  30 pgkkynPlfiygevGlGktHLlkaignevlena 62 
                 p++    +++ g++G+Gkt L k+++ +v  +a
  CCG91361.1 548 PKRPIGSFIFLGPTGVGKTMLAKTLAEYVFGSA 580
                 56666667788***************9997665 PP

>> DUF3837  Domain of unknown function (DUF3837)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2       2.4     9e+02      46      72 ..     457     484 ..     408     495 .. 0.79
   2 ?   11.6   0.0   0.00075      0.28       5      66 ..     652     713 ..     650     724 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 2.4
     DUF3837  46 keeleelkekleeelkkvspk.dekekk 72 
                 +++  elkekle+ +++ ++  deke++
  CCG91361.1 457 RDKERELKEKLEQRIAEWKKRrDEKETT 484
                 4566788888888887766541444444 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00075
     DUF3837   5 iakqavkiKckfekailtgnyElayalGllakllglpeieekeeleelkekleeelkkvspk 66 
                 i+ +++  K+ f + i++    + + +Gl   +lg+++ +++ + e++ke++ e +kk+ + 
  CCG91361.1 652 IVTDSLGRKIDFRNTIIIMTSNVGAEMGLKPGVLGFRTKQDEISYEQMKERMLETVKKTFKP 713
                 899***********65555555678899999999*999999999*******99999887654 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.087        33       3      26 ..     219     243 ..     217     295 .. 0.76
   2 ?    7.2   0.0     0.015       5.5       2      22 ..     555     575 ..     554     592 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.087
      AAA_28   3 vitGgestGKTtlleaLaar.gypv 26 
                 v++G  + GKT ++e La++   + 
  CCG91361.1 219 VLIGEAGVGKTAIVEGLAQEiANEN 243
                 899***************8653333 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.015
      AAA_28   2 ivitGgestGKTtlleaLaar 22 
                 ++++G+ + GKT l++ La+ 
  CCG91361.1 555 FIFLGPTGVGKTMLAKTLAEY 575
                 6899***************86 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.049        18      11      43 ..     205     239 ..     196     320 .. 0.71
   2 ?    6.0   0.0      0.02       7.3      23      40 ..     556     573 ..     531     596 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.049
                 HHHHHHH..H-SEEEEE--TTSSTTHHHHHHHHHH CS
        PhoH  11 eylealk..kndivfaiGpaGtGKtylavalavea 43 
                 +++++l   +++  + iG+aG GKt +   la e+
  CCG91361.1 205 RVMQILCrrTKNNPVLIGEAGVGKTAIVEGLAQEI 239
                 55555555555567899********9876665443 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.02
                 EEE--TTSSTTHHHHHHH CS
        PhoH  23 faiGpaGtGKtylavala 40 
                 + +Gp+G GKt+la +la
  CCG91361.1 556 IFLGPTGVGKTMLAKTLA 573
                 678***********9887 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.92   3.4e+02     116     156 ..     201     242 ..     166     260 .. 0.73
   2 ?   10.1   0.1   0.00083      0.31     116     168 ..     539     590 ..     411     629 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.92
       T2SSE 116 ekiaevlrkavr.erglilvsGgTgsGKttllyallkeinks 156
                 ++i++v++   r ++ + ++ G  g GKt ++  l +ei+++
  CCG91361.1 201 NEIERVMQILCRrTKNNPVLIGEAGVGKTAIVEGLAQEIANE 242
                 445555554443146778899***********9999999876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00083
       T2SSE 116 ekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvE 168
                 ++ ++ l+ + r  g++++ G+Tg GKt l+ +l +++  s + ++ + D  E
  CCG91361.1 539 QRSRADLKDPKRPIGSFIFLGPTGVGKTMLAKTLAEYVFGSADALIQI-DMSE 590
                 5555557777667799*****************999998887777777.4555 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       9.2   3.5e+03      60     118 ..     222     280 ..     219     291 .. 0.71
   2 ?   11.5   0.0   0.00066      0.25      16      79 ..     513     578 ..     503     597 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 9.2
                 E-TTSSHHHHHHHHHHHHSTTGGGSTTEEEEEHHHHS--GGGHHHHHHHHHHHHHHHHH CS
      Torsin  60 GwtGtGknfvaeiiaenlyrdGlrsdyvkkfvatadfPkkkkveeykeelkeqiretlk 118
                 G +G Gk  + e +a+++ ++ +      k v t d+      ++y+ +++e+i+  ++
  CCG91361.1 222 GEAGVGKTAIVEGLAQEIANENVPDLLRDKRVITLDLALMVAGTKYRGQFEERIKAVME 280
                 88899999999999988887777766666777777777777777777777777766555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00066
                 HHHHHHHHHHH--S-HHHHHHHHHHHH.HHHT-SS-SS-E.EEEEEE-TTSSHHHHHHHHHHHHST CS
      Torsin  16 leeLekdlekklfGqhlvkklvvksvk.aylenekpkkpL.vlsfhGwtGtGknfvaeiiaenlyr 79 
                 + ++ ++l+k+++Gq  + + + ++++ +  + ++pk+p+  + f G tG Gk  +a+ +ae ++ 
  CCG91361.1 513 FLNVGEELRKRVIGQDEAIEALSRALQrSRADLKDPKRPIgSFIFLGPTGVGKTMLAKTLAEYVFG 578
                 5667789******************972555667899998457899****************9985 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.25        93       5      24 ..     219     238 ..     215     244 .. 0.82
   2 ?   -1.1   0.0       3.8   1.4e+03      19      43 ..     363     387 ..     361     400 .. 0.90
   3 ?    5.9   0.0     0.026       9.6       4      23 ..     555     574 ..     552     590 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.25
   PduV-EutP   5 lliGkvgsGKttLtqalkge 24 
                 +liG+ g+GKt++ + l +e
  CCG91361.1 219 VLIGEAGVGKTAIVEGLAQE 238
                 79*********988777654 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.8
   PduV-EutP  19 qalkgeelkYkktqaiefsdeviDt 43 
                 q l+g + kY+     +f+d++iDt
  CCG91361.1 363 QILHGLKPKYEAHHKAKFTDQAIDT 387
                 788999999***************9 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.026
   PduV-EutP   4 illiGkvgsGKttLtqalkg 23 
                  +++G++g+GKt L+++l +
  CCG91361.1 555 FIFLGPTGVGKTMLAKTLAE 574
                 589*************9975 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.14        51      29      50 ..     221     248 ..     219     258 .. 0.75
   2 ?    2.1   0.5      0.46   1.7e+02     108     213 ..     456     507 ..     341     552 .. 0.54
   3 ?    4.8   0.0     0.071        27      29      48 ..     558     577 ..     554     636 .. 0.86
   4 ?   -2.0   0.0       8.1     3e+03     136     152 ..     693     736 ..     678     809 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.14
       DUF87  29 lgsTGsGKSntvavLleelle......k 50 
                 +g++G+GK+  v  L +e+++       
  CCG91361.1 221 IGEAGVGKTAIVEGLAQEIANenvpdlL 248
                 799*****************75544443 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.46
       DUF87 108 eddkpaaavqrsvleealdqaka..keekeklssdepveklleelkkekeelrklknqaiarlldkledllrkggsfsnsstdliallleklekegkit 204
                    ++++ ++++ le+ ++++k+  +e+++ ++ d+ ++                                                        +k t
  CCG91361.1 456 L--RDKERELKEKLEQRIAEWKKrrDEKETTITEDDMMQ------------------------------------------------------IVSKWT 498
                 2..222333344444444444443333333333333333......................................................333333 PP

       DUF87 205 iidlsgvde 213
                  i++  + +
  CCG91361.1 499 GIPITRITQ 507
                 333333333 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.071
       DUF87  29 lgsTGsGKSntvavLleell 48 
                 lg TG+GK+ +++ L e + 
  CCG91361.1 558 LGPTGVGKTMLAKTLAEYVF 577
                 899***********998665 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 8.1
       DUF87 136 klssdepveklleelk...........................k 152
                 ++s+++  e++le +k                           +
  CCG91361.1 693 EISYEQMKERMLETVKktfkpeflnrvddlivfrsltredmikI 736
                 55555555555555554444444444444444444444332221 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.07        26       5      29 ..     219     243 ..     215     251 .. 0.86
   2 ?    5.3   0.1     0.036        13       4      25 ..     555     576 ..     553     586 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.07
                 EEEESTTSSHHHHHHHHHHHHHHTT CS
       SRP54   5 llvGlqGaGKTttlaKLaallkkeg 29 
                 +l+G  G+GKT  +  La+ + +e+
  CCG91361.1 219 VLIGEAGVGKTAIVEGLAQEIANEN 243
                 799***************9998876 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.036
                 EEEEESTTSSHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaall 25 
                 ++++G++G+GKT  +  La+++
  CCG91361.1 555 FIFLGPTGVGKTMLAKTLAEYV 576
                 5899*********999999986 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.077        29       6      27 ..     222     243 ..     219     543 .. 0.77
   2 ?    2.9   0.0      0.28   1.1e+02       8      22 ..     561     575 ..     555     603 .. 0.89
   3 ?   -1.5   0.0       6.7   2.5e+03      64      90 ..     705     750 ..     609     769 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.077
                 SSTTSSHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLaralarrg 27 
                 +  GvGKT ++ +La+ +a+++
  CCG91361.1 222 GEAGVGKTAIVEGLAQEIANEN 243
                 5679***********9998754 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.28
                 TTSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxx RF
        CbiA   8 GGvGKTtlaanLara 22 
                  GvGKT+la +La +
  CCG91361.1 561 TGVGKTMLAKTLAEY 575
                 7********999975 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 6.7
                 HHHCHCHHHH.....................EEEEEEEEESS...- CS
                 xxxxxxxxxx...................xxxxxxxxxxxxxxxxx RF
        CbiA  64 ealgkkkall...................lkiagvvlnrvdgenee 90 
                 e+++k+++++                   +ki+ + +n+v +++ +
  CCG91361.1 705 ETVKKTFKPEflnrvddlivfrsltredmIKIVHLEVNKVAERLKS 750
                 4444444333333333333333333333344444444555444444 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0098       3.7      10      39 ..     215     244 ..     208     354 .. 0.79
   2 ?    0.4   0.0         2   7.4e+02      13      33 ..     555     575 ..     547     588 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0098
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelgg 39 
                 +++ ++++ +G GKT ++++  +++ +++ 
  CCG91361.1 215 KNNPVLIGEAGVGKTAIVEGLAQEIANENV 244
                 5566899************99999888774 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 2
      AAA_19  13 llvtaGpGtGKTrvlkhival 33 
                 ++ +++ G GKT + k+  ++
  CCG91361.1 555 FIFLGPTGVGKTMLAKTLAEY 575
                 5778999*****998877665 PP

>> PP2C_C  Protein serine/threonine phosphatase 2C, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   0.00091      0.34      19      55 ..     458     495 ..     452     502 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00091
      PP2C_C  19 kkEkeldekleervkeiie.keekkeeldlekvlkvLa 55 
                 +kE+el+ekle+r++e  + + ek+  ++ ++++++++
  CCG91361.1 458 DKERELKEKLEQRIAEWKKrRDEKETTITEDDMMQIVS 495
                 69*****************6667777788888988875 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   8.5      0.27     1e+02      23     198 ..     219     473 ..     214     487 .. 0.63
   2 ?    5.6   0.3     0.054        20      20      37 ..     553     570 ..     541     583 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.27
      AAA_23  23 lItGpNGaGKTTildAiklaL.ygetprlsrksgrgfeksdveiese...gkvkayveltfenkdgry............................... 86 
                 +++G+ G GKT+i++ +      + +p+l r+++    +    ++     g+ ++ ++   e +++ +                               
  CCG91361.1 219 VLIGEAGVGKTAIVEGLAQEIaNENVPDLLRDKRVITLDLALMVAGTkyrGQFEERIKAVMEEIRKAKniilfidelhtivgagsaegamdasniikpa 317
                 678999***********9966155558888865333333333333334447777778888888888778888888888888888888888888888777 PP

      AAA_23  87 ..........trsiererelskkkgkttkkaklelleideleqfisellg..skkiilnlilflgqer.........feefelkdkke........... 153
                            +++++ r+ ++k++   +  ++ l+e    e++i+ l g   k++  +   f +q                                 
  CCG91361.1 318 lsrgelqcigATTLSEYRKYIEKDAALERRFQTVLVEAPSVEETIQILHGlkPKYEAHHKAKFTDQAIdtavrlsdrY---------Ltgrflpdkaid 407
                 777777777766666666666666666666666777775555555554441133444444445555543333333330.........255555555566 PP

      AAA_23 154 ..................rleelekeleeledekk.llekl..eqekekekeleeleeeleeilke 198
                                   +l++le+el  + ++k+  ++++  e++   +++  el+e+le+ + e
  CCG91361.1 408 imdeagarariaatmrppELKDLENELLAIRAKKDeCIKAQnfEKAAALRDKERELKEKLEQRIAE 473
                 677777777777788777888888887777665552344445555555555566666666655444 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.054
      AAA_23  20 gltlItGpNGaGKTTild 37 
                 g +++ Gp+G GKT +  
  CCG91361.1 553 GSFIFLGPTGVGKTMLAK 570
                 679***********9876 PP

>> Endonuc_Holl  Endonuclease related to archaeal Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   2.9      0.18        68      30      71 ..     444     488 ..     426     505 .. 0.73
   2 ?    5.1   0.0     0.049        18     110     142 ..     721     752 ..     709     760 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.18
  Endonuc_Holl  30 ewkkeeaeeleklkeaeallkkeaevkleewkkke...ekeiRed 71 
                     k+++ e+   l+  e++lk++ e++++ewkk++   e +i ed
    CCG91361.1 444 CIKAQNFEKAAALRDKERELKEKLEQRIAEWKKRRdekETTITED 488
                   456677777777777899999999****99998651114455555 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.049
  Endonuc_Holl 110 DlvvFdGLsegeveeivfvEvKtGkssslseRe 142
                   Dl+vF  L ++++ +iv +Ev    + +l +R+
    CCG91361.1 721 DLIVFRSLTREDMIKIVHLEVNKV-AERLKSRK 752
                   9*********9**********876.66777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1413  (0.0788109); expected 358.6 (0.02)
Passed bias filter:                      845  (0.0471303); expected 358.6 (0.02)
Passed Vit filter:                       120  (0.00669307); expected 17.9 (0.001)
Passed Fwd filter:                        48  (0.00267723); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              48  [number of targets reported over threshold]
# CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.47
# Mc/sec: 5375.65
//
Query:       CCG91362.1  [L=365]
Description: Arginine kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-67  226.2   0.6    4.2e-67  225.7   0.6    1.2  1  ATP-gua_Ptrans  ATP:guanido phosphotransferase, C-terminal ca
     0.0088   16.0   0.1      0.017   15.1   0.1    1.4  1  Focal_AT        Focal adhesion targeting region
  ------ inclusion threshold ------
      0.019   15.1   0.1       0.18   11.9   0.0    2.1  2  Adhes-Ig_like   Adhesion molecule, immunoglobulin-like


Domain annotation for each model (and alignments):
>> ATP-gua_Ptrans  ATP:guanido phosphotransferase, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.7   0.6   7.1e-71   4.2e-67      23     211 ..      74     252 ..      52     253 .. 0.93

  Alignments for each domain:
  == domain 1  score: 225.7 bits;  conditional E-value: 7.1e-71
                     ECTTS-HHHHHHHHHTT-S-SS--HHHHCTTTTTTTTTT-EEEEETTSSEEEEESSSSSEEEEEEEESS-HHHHHHHHHHHHHHHCCCC-B-EET CS
  ATP-gua_Ptrans  23 klteldeeerqelvekhllfkekdkllqaaelardwpkgrgvlinedetflvwvNeeDhlRiislekgldleevyerlsraldlleeklefafde 117
                     ++++ ++ e+q+lve+hl++         +e+a++   g g+++n++ ++++++NeeDhlRi+++++gl+l+++++ +++++d+l+eklefaf+ 
      CCG91362.1  74 SMDRFSPLEKQVLVEEHLIS---------REHAAKN-VGSGLAVNSSRSVSIMINEEDHLRIQTFKSGLQLKAAWKLAEKIDDELDEKLEFAFST 158
                     688899**************.........5555444.488******************************************************* PP

                     TTEE--SSGGG-BT--EEEEEEE-CCHHCST..TTHHHHHHHTTEEEEETTTCCHCCHTTEEEEEES--SSS-HHHHHHHHHHHHHHHHHHHHH CS
  ATP-gua_Ptrans 118 klGyltscptnlGTGlRasvmikLPaLskekqieklkellkklglqvRGlygegseaeggifdiSNqrrLGlsEeeivqdlisvvkqlielEke 211
                     klGylt+cptn+GTGlR+s m++LPaL++++qi+++ ++++++gl+vRGl geg+ea g++f+iSNq++LG sEeei+++l++v++q+i+ E++
      CCG91362.1 159 KLGYLTACPTNVGTGLRVSAMMHLPALVLSEQISQIVKAVNRIGLAVRGLFGEGTEALGNLFQISNQMTLGESEEEILERLHKVITQIIQHEEN 252
                     ********************************************************************************************97 PP

>> Focal_AT  Focal adhesion targeting region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   2.9e-06     0.017      19     109 ..     176     267 ..     171     273 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.9e-06
    Focal_AT  19 vkavvelsqevetakaeeyvslvksvglelrkLltsvdellssl.pasarreielaekvlskdlaelisamklaqqyssttldeeyrkemlk 109
                 v a+++l   v + + +++v+ v ++gl++r L+++ +e l +l + s +      e+ + + l+++i+++ + +++++ +l +e  k +l 
  CCG91362.1 176 VSAMMHLPALVLSEQISQIVKAVNRIGLAVRGLFGEGTEALGNLfQISNQMTLGESEEEILERLHKVITQIIQHEENARQKLLQEKPKFILD 267
                 789999999999************************999987752667788888888999999*************9999998887777765 PP

>> Adhes-Ig_like  Adhesion molecule, immunoglobulin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.1e-05      0.18      28     104 ..     115     190 ..     104     195 .. 0.88
   2 ?    0.5   0.0      0.11   6.5e+02      66     104 ..     217     255 ..     210     259 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.1e-05
                    EB--STTTEEEEEEETTEE-TT-EE---EECT-SSS--EEEEEEEEEEE-----SS--SEEEEEEEEEETTEEEEEE CS
  Adhes-Ig_like  28 vtPadpdaLslslllGdreLegvqaleeeeeeeaqegedllfrvtkrWlLPalgtplppaLhCqvtmklpgleLshr 104
                    ++  ++d+L +  +  + +L+ + +l+e+ ++e +e+ +  f  tk   L a  t+++  L+  + m+lp l+Ls +
     CCG91362.1 115 IMINEEDHLRIQTFKSGLQLKAAWKLAEKIDDELDEKLEFAFS-TKLGYLTACPTNVGTGLRVSAMMHLPALVLSEQ 190
                    5556788999999999999**************9999888886.88999*************************976 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.11
                    EEEEEEEEEEE-----SS--SEEEEEEEEEETTEEEEEE CS
  Adhes-Ig_like  66 dllfrvtkrWlLPalgtplppaLhCqvtmklpgleLshr 104
                      lf++ ++  L  ++ ++ + Lh  +t  +++ e +++
     CCG91362.1 217 GNLFQISNQMTLGESEEEILERLHKVITQIIQHEENARQ 255
                    448888888888888888888888777777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2430.04
//
Query:       CCG91363.1  [L=426]
Description: Histidinol dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.3e-136  455.9   0.0   1.5e-136  455.7   0.0    1.0  1  Histidinol_dh  Histidinol dehydrogenase
  ------ inclusion threshold ------
       0.18   10.7   0.4       0.28   10.0   0.1    1.4  2  DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A


Domain annotation for each model (and alignments):
>> Histidinol_dh  Histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  455.7   0.0  1.7e-140  1.5e-136       2     408 ..      24     422 ..      23     423 .. 0.97

  Alignments for each domain:
  == domain 1  score: 455.7 bits;  conditional E-value: 1.7e-140
                    -------HHHHHHHHHHHHHHHHHCHHHHHHHHHHCCSSSSGGCCEE-HHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHCC----EEEEEECTTEE CS
  Histidinol_dh   2 krseedseeveetvkeiledvreeGdealleytekFDkvkkleslrvseeeieealekldeelkealeeaaenirkfheaqkeseeevketepgvv 97 
                    +r+  +s+e+ee+vk++le+v ++Gd+a+ +yte+FDk    +s++ ++ +i+++ ++ ++ + +al+ a++ni+ f++a k+ +++  ++ +g++
     CCG91363.1  24 SRTYLSSKEIEEKVKTVLEEVLHRGDKAVSQYTEQFDK----QSIEPQSFRITKKPSAPPKPVIDALRWAKKNITLFAKASKT-KNWSIRNVEGAR 114
                    57788999*****************************4....456777777777889999**********************6.58999******* PP

                    EEEEEEE-SEEEEE---STT--CHHHHHHHHHHHHHT-SEEEEEE-SSGG.--HHHHHHHHHCT-SEEEE--HHHHHHHHHH--SSS---SEEE-- CS
  Histidinol_dh  98 lgqkvrpiervGlYvPgGkaaypStvlmnavpAkvAgvkeivvvtPpqdgkvnpavlaaaklagvdeiykvGGaqAiaalAyGtesipkvdkivGP 193
                    +g+ + p +r+G+YvPgG+a+++St+lm++  Ak Agvkeivvv+Pp    +np + +a++  g++e+y++GG+qAi+alA+Gtesi+kv+ki+GP
     CCG91363.1 115 VGEIYSPFQRIGVYVPGGTAPLVSTALMTVCIAKTAGVKEIVVVSPP---PINPILHFAIEYSGATELYQIGGIQAIGALAFGTESIRKVEKIFGP 207
                    **********************************************9...5********************************************* PP

                    -SHHHHHHHHHHCTTBEES----S-EEEEEE-TTS-HHHHHHHHHHHHTT-TT-EEEEEES-HHHHHHHHHHHHHHHCC-TTHHHHHHHHCCH-EE CS
  Histidinol_dh 194 GniyVaaAKrlvsgevgiDmiaGPsEvlviaDetadpefvAaDLlsqaEHdedaqavlvttseelaeaveeevekqleelprkeiaekslekqsai 289
                    Gn+yV +AKr+v g+v+iD++ GPsE++v+a + ++pef+AaDLl+qaEH++++++++vt++++l+++v e++++ql +l+rk+i+ + l++++++
     CCG91363.1 208 GNAYVVEAKRQVVGTVAIDLLPGPSEIAVLASSGSNPEFIAADLLAQAEHGPSSKILFVTPDDSLLQSVIEAINQQLISLQRKHILMEVLSHHAYF 303
                    ************************************************************************************************ PP

                    EE-SSHHHHHHHHHHH--SEEEEESTTHHHHGGG--S-SEEEESTT--HHHHHHTSSS------TTGGGT---S-GGGGEEEEEEEEE-HHHHHHH CS
  Histidinol_dh 290 ilvedleeaielaneyApEHlelqvedpeellekiknaGaiflGeyspeslgDYaaGtnhvLPTsgtArfssglsvedFlkkisvqelskealkel 385
                    + v +l+e iel++++ApEHl+lq+ +p+++l ++kn Gai+lG+ys++++gD++aG++h+LPT+g A+ +sgl++++F+k++s++e+sk+al ++
     CCG91363.1 304 VQVASLDEGIELIEDFAPEHLSLQIPSPKKFLFRLKNCGAIYLGPYSAVAAGDFLAGPSHTLPTGGGAKSFSGLTLSQFYKRTSLIEYSKKALLKV 399
                    ************************************************************************************************ PP

                    HHHHHHHHHHTT-HHHHHHHHHH CS
  Histidinol_dh 386 aeavetlAeaEgLeaHaeavkvR 408
                    ++ +e++A++E+L+aH +++k+R
     CCG91363.1 400 SPFLESFATIESLDAHGASIKIR 422
                    **********************9 PP

>> DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   3.2e-05      0.28      92     128 ..      33      69 ..      27      75 .. 0.92
   2 ?   -4.0   0.0      0.55   4.9e+03     349     375 ..     274     300 ..     271     307 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.2e-05
  DNA_topoisoIV  92 ietrLskiarellkeidketvdyqenyDgsekEPevl 128
                    ie +++ + +e+l+  dk + +y+e++D +++EP+ +
     CCG91363.1  33 IEEKVKTVLEEVLHRGDKAVSQYTEQFDKQSIEPQSF 69 
                    7889999***************************875 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 0.55
  DNA_topoisoIV 349 devievirkskkekkakkeLieelsee 375
                    + vie i++++ + ++k+ L+e ls++
     CCG91363.1 274 QSVIEAINQQLISLQRKHILMEVLSHH 300
                    678888888888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 2954.67
//
Query:       CCG91364.1  [L=520]
Description: GMP synthetase (glutamine aminotransferase) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-45  153.6   0.0      2e-45  152.8   0.0    1.4  1  GMP_synt_C       GMP synthase C terminal domain
    4.2e-42  144.1   0.0    7.7e-42  143.2   0.0    1.4  1  GATase           Glutamine amidotransferase class-I
    5.7e-09   35.4   0.0    6.7e-08   32.0   0.0    2.0  2  NAD_synthase     NAD synthase
    4.3e-08   33.2   0.0    1.4e-07   31.5   0.0    1.8  1  Peptidase_C26    Peptidase C26
    0.00046   20.3   0.0    0.00073   19.6   0.0    1.3  1  PAPS_reduct      Phosphoadenosine phosphosulfate reductase fa
    0.00077   18.4   0.0     0.0012   17.7   0.0    1.3  1  tRNA_Me_trans    tRNA methyl transferase
  ------ inclusion threshold ------
       0.07   12.6   0.0       0.27   10.7   0.0    1.8  2  QueC             Queuosine biosynthesis protein QueC
      0.083   12.2   0.0       0.13   11.5   0.0    1.3  1  Arginosuc_synth  Arginosuccinate synthase


Domain annotation for each model (and alignments):
>> GMP_synt_C  GMP synthase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.8   0.0   8.7e-49     2e-45       1      92 []     428     519 ..     428     519 .. 0.99

  Alignments for each domain:
  == domain 1  score: 152.8 bits;  conditional E-value: 8.7e-49
                 CCCCTTT-GGGSSEEEEEEEEEEE----------EEEEEEEEE---------B----HHHHHHHHHHHHHHSTT---EEEE---TTTS-S-- CS
  GMP_synt_C   1 eelkkaglykkiwQafavllpvksvGvmgdkRtyeyvvalRaveseDamtadvaelpyevLekissrivnevkgvnrvvyditskPpatiEw 92 
                 ee+kkag+y+k+wQafavllpv+svGvmgd+Rty+ ++alR+ves D+mtad+a+lp e+L++i+++i+nev+gvnrvvydi+skPpatiEw
  CCG91364.1 428 EEIKKAGYYEKVWQAFAVLLPVRSVGVMGDRRTYDFTIALRVVESIDGMTADWAKLPPELLSRIANKIINEVEGVNRVVYDISSKPPATIEW 519
                 79****************************************************************************************** PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.0   3.4e-45   7.7e-42       2     189 ..      15     195 ..      14     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 3.4e-45
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekeh 100
                 +iD+++++t+ ++++++ lgv  +++ +++s++e   ++ +p gi++sgGp s   e ++++ ++++e ++PiLGIC+G Q +a  fg+kv+k + +++
  CCG91364.1  15 IIDFGSQYTQLIARRIRDLGVFSTILSWESSFQEL--CELSPAGIILSGGPSSILEEAAPTFDNRIFELGVPILGICYGYQWIASHFGGKVEKGE-QGE 110
                 79*********************************..579******************************************************9.677 PP

                 EEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHHHH CS
      GATase 101 hggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnflik 189
                  g t+    ++t+l++gl++ ++++ +H++ v      p+++ev+a ++d+   ++i ++k++++++QFHPE+t+t++g+++l+nfl++
  CCG91364.1 111 YGRTSLSIINPTRLFEGLPSHLTVWNSHGDRVSV---MPEDFEVIAFTADE-PHAAICNLKKNIYCLQFHPEVTHTEHGEKILANFLFE 195
                 7777766666***********************9...***********876.89999999999***********************986 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0     3e-11   6.7e-08       6      85 ..     210     289 ..     205     320 .. 0.75
   2 ?    1.0   0.0     0.082   1.8e+02     148     177 ..     368     397 ..     367     400 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 3e-11
                   HHHHHHHHHHCTTSEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE--SSSTTHHHHHHHHHHH.HHHTSEEEE---HHHH CS
  NAD_synthase   6 vdflkeyvkkagakgvvlGlSGGvDSslvaalavkalgkenvlalllPssvsseedvedalala.enlgievktidikpiv 85 
                   +++++e  +k g + v+lG+SGGvDSs++aal  ka+  e+   + + +    +++++   +l+  nlgi+++ +d ++  
    CCG91364.1 210 EESIEEIKRKVGKERVILGISGGVDSSVTAALIHKAI-GERLYPIFVDTGLLRKNEAQIISELMrRNLGIKIHCFDASKEF 289
                   5677778889999************************.5788888888777777777776666525788888888865544 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.082
                   BETTTTS-HHHHHHHHHHTT--HHHHCS-- CS
  NAD_synthase 148 lapiaellKtevkeLakelnvPervlkkpP 177
                   ++p+  l+K ev++    l+  +++l ++P
    CCG91364.1 368 IEPLRFLFKDEVRKVGTLLGLSHELLYRHP 397
                   68*******************999999988 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   6.2e-11   1.4e-07     101     216 .]      78     178 ..      72     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 6.2e-11
  Peptidase_C26 101 alergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavk.vekgsllaellgseeievnslHhqaikelaeelrveAvaeDgv 195
                    + e gvPilgiC G+q ++  +GG++ +  +            ++  + +++ +++ +l++ l +  +  v + H   ++ + e+++v+A ++D+ 
     CCG91364.1  78 IFELGVPILGICYGYQWIASHFGGKVEKGEQG-----------EYG-RTSLSiINPTRLFEGLPS--HLTVWNSHGDRVSVMPEDFEVIAFTADEP 159
                    56889*******************98765553...........234.444441667777777776..999************************** PP

  Peptidase_C26 196 iEaieseeakafvlgvQwHPE 216
                      ai   ++   ++ +Q+HPE
     CCG91364.1 160 HAAICNLKK--NIYCLQFHPE 178
                    ***998885..59*******9 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.3e-07   0.00073       2      70 ..     225     295 ..     224     319 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.3e-07
                  EEEE--SSCTCHHHHHHHHHHCTTH.EEEEEE-STB-HHHHHHHHHHHHHT.T-EEEEEE-SCHHHHHHHH CS
  PAPS_reduct   2 lvvsvsgGkdslVllhLalkafkpv.pvvfvdtghefpetiefvdeleery.glrlkvyepeeevaekina 70 
                  +++ +sgG ds+V+  L+ ka  ++   +fvdtg   ++  + + el +r  g++++ ++  +e+  k+  
   CCG91364.1 225 VILGISGGVDSSVTAALIHKAIGERlYPIFVDTGLLRKNEAQIISELMRRNlGIKIHCFDASKEFLIKLRN 295
                  56779*******************7469*****************9998877*****99999887666655 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.5e-07    0.0012       2      24 ..     224     246 ..     223     294 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.5e-07
  tRNA_Me_trans   2 kvvvalSgGVDSsvaaallkeqg 24 
                    +v+ ++SgGVDSsv+aal++++ 
     CCG91364.1 224 RVILGISGGVDSSVTAALIHKAI 246
                    89*****************9874 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00012      0.27       2      60 ..     225     284 ..     224     300 .. 0.79
   2 ?   -1.3   0.0      0.56   1.3e+03     148     178 ..     361     391 ..     347     394 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
                 EEEE--SSHHHHHHHHHHHHH.-SEEEEEEEESS-TTSHHHHHHHHHHH.HT--.-EEEEE CS
        QueC   2 avvllSGGlDSttvlalakke.gkevealtfdYgqrhkkeleaakkiak.elgveehkild 60 
                 +++ +SGG+DS++ +al +k+ g++++ + +d g  +k+e ++ +++++ +lg+ + + +d
  CCG91364.1 225 VILGISGGVDSSVTAALIHKAiGERLYPIFVDTGLLRKNEAQIISELMRrNLGI-KIHCFD 284
                 67889******99888776652699*********99999999998876516777.555555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.56
                 HTS--EEE-TTTT--HHHHHHHHHHTTHHHH CS
        QueC 148 edkkieieaPlidlsKaeivklgkelgvple 178
                 +  ++++  Pl  l K e+ k+g+ lg+  e
  CCG91364.1 361 KRLPFKLIEPLRFLFKDEVRKVGTLLGLSHE 391
                 67789999***************99998665 PP

>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     6e-05      0.13       1      64 [.     226     290 ..     226     297 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6e-05
  Arginosuc_synth   1 vLaysGGlDtsviikllkeklgeeviavavdvGqee.edldevkekalklgavksvvvDakeefv 64 
                      +L  sGG+D sv  +l+++ +ge    + vd G  + ++ + ++e  ++   +k  + Da++ef 
       CCG91364.1 226 ILGISGGVDSSVTAALIHKAIGERLYPIFVDTGLLRkNEAQIISELMRRNLGIKIHCFDASKEFL 290
                      6889*****************************754156666777777666779*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.21s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4227.89
//
Query:       CCG91365.1  [L=391]
Description: IMP dehydrogenase/GMP reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-55  187.9   3.6    2.8e-54  184.4   3.6    2.0  1  IMPDH         IMP dehydrogenase / GMP reductase domain
    4.5e-12   45.7   0.6    4.4e-11   42.4   0.2    2.4  3  FMN_dh        FMN-dependent dehydrogenase
    7.1e-09   35.5   1.5    8.1e-07   28.7   1.5    2.8  1  NMO           Nitronate monooxygenase
    2.2e-06   27.2   0.1    0.00013   21.4   0.0    2.3  2  ThiG          Thiazole biosynthesis protein ThiG
    0.00019   20.7   0.5    0.00037   19.8   0.5    1.5  1  Glu_synthase  Conserved region in glutamate synthase
     0.0061   15.8   0.1      0.013   14.7   0.1    1.5  1  DHO_dh        Dihydroorotate dehydrogenase
     0.0066   15.9   0.0      0.012   15.1   0.0    1.4  1  PEP_mutase    Phosphoenolpyruvate phosphomutase


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.4   3.6   1.1e-57   2.8e-54       2     330 ..      15     368 ..      14     379 .. 0.81

  Alignments for each domain:
  == domain 1  score: 184.4 bits;  conditional E-value: 1.1e-57
                 --GGGEEEE---B-S-GGGSB--EESS....TTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SS...S-HHHHHHHHHHHHTS........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx........... RF
       IMPDH   2 ltfddvllvpaksevlpkevdlktklt....kkiklniPlvsaamdtvtesemAialareGgigvihkn...lsieeqaeevkkvkrs........... 82 
                 + fd++ lvp++ +++p+evd++ ++t    k+ikl+iP++++amd vt+ +  i+++r Ggigvi  +   +  e+  e ++++ +            
  CCG91365.1  15 YGFDEISLVPGEVTINPEEVDTSFEIThpsgKTIKLKIPILASAMDGVTDPRFCIEMSRLGGIGVINLEgiqTRYENPQEVINEIIKCdqnkvtellqk 113
                 67************************9776678*********************************8652213344444445555444788******** PP

                 ..........TTSXBXTTSXB-EEEEE-SSTTHHHHHHHHH.HTT-SEEEEE-STSSSHHHHHHHHHH..HHHTTT..SEEEEEEE-SHHHHHHHHHTT CS
                 ..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  83 ..........pnaakdekgrllvgaavgvkedalervkalv.eagvdvlvvdsahghsekvleavkei..kkkvee..veviaGnvataegakaLieag 166
                             a  +e ++    aav+   ++ e    ++ eag+d+ +v s+    +++ +  k++  k+ +++  + v++Gn +t++ + +L+++g
  CCG91365.1 114 iysapvkeklIVARIEELKKGNAIAAVSSIPQTAETYGYIAqEAGADLYIVQSTVSTVRHISTRYKTLdlKQFCKNmrIPVLVGNAVTYNVVLELMDCG 212
                 ****9998875566677777777788888888888887765279*******99887777766665543114444433499******************* PP

                 -SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHHHHCTCT......-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEETTEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 167 adavkvGiGpGsiCttrvvagvGvpqltAvaevaeaakkag......vpviaDGGikysgdivkAlaaGadavmlGsllagteEspgeviliegrkyKe 259
                 + +v +G+GpG+ Ct r v g+Gvpq+tA +++a+a + +       vp+i+DGG++  gd++kA+a+G+davm+Gs +a+ eE+pg+ +         
  CCG91365.1 213 VSGVLIGVGPGAACTSRGVLGIGVPQVTATVDAAAARDAYYkktgryVPIITDGGMRRGGDLCKAIACGSDAVMIGSAFARAEEAPGKGCH-------- 303
                 *******************************9998765543356699****************************************9876........ PP

                 EEETTSHHHHHH-SS-TTS-..--SS-SBEEEEE...E-.-B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH-E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 260 yrGmgslgamkkgskdryfqkkeklvpeGvegrv...py.kgsvkevveqlvgglrsgmgylGaktieelkekak 330
                  +Gm++ +a+      r      +l+  G++g +    y  ++v++  ++lvg l ++mg++Ga+ti++++e   
  CCG91365.1 304 -WGMATPHANL----PRG-----TLIRMGISGPLsqiLYgPATVDDGSQNLVGALATSMGNVGAATIKQFQEAEI 368
                 .9*****9992....233.....4666677765411133246899999**********************98654 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.87   2.2e+03      29      69 ..      16      60 ..      11      74 .. 0.69
   2 !   42.4   0.2   1.7e-14   4.4e-11     196     311 ..     171     299 ..      81     304 .. 0.79
   3 ?    0.6   0.0      0.09   2.3e+02     309     344 ..     331     366 ..     326     370 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.87
                GGGGEEE--.-SSSS-SS-B--EEET...TEEESS..SEEE--BSTG CS
      FMN_dh 29 aferirlrp.rvlrdvskvdlsttll...Gqklsl..PvliaPvgla 69
                 f++i l+p +v  + ++vd+s ++    G++++l  P+l++++   
  CCG91365.1 16 GFDEISLVPgEVTINPEEVDTSFEIThpsGKTIKLkiPILASAM--D 60
                58888888856788889999999887777876654116665554..3 PP

  == domain 2  score: 42.4 bits;  conditional E-value: 1.7e-14
                 CCHB-TC--HHHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGG.............TSSTT---HHHCHHHHHHHH..SS-EEEESS-- CS
      FMN_dh 196 gkqldpsltwddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGG.............RqldgapatidvLpeiveavggrievlvDgGir 281
                  ++++++ +  d+k++ +++++p++v   +t + + +++++Gv+g+++    G              q+  ++ +  +  +  ++ g+ ++++ DgG r
  CCG91365.1 171 VRHISTRYKTLDLKQFCKNMRIPVLVGNAVTYNVVLELMDCGVSGVLIGVGPGaactsrgvlgigvPQVTATVDAAAARDAYYKKTGRYVPIITDGGMR 269
                 33456777888*************************************98888899998888855555555555555555556666778********** PP

                 SHHHHHHHHHTT-SEEEESHHHHHHHHHHH CS
      FMN_dh 282 rGsDvlkAlalGAdavllGRpflyglaagG 311
                 rG D  kA+a+G dav++G +f+ +  a G
  CCG91365.1 270 RGGDLCKAIACGSDAVMIGSAFARAEEAPG 299
                 ********************9988766655 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.09
                 HHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHCG CS
      FMN_dh 309 agGeeGvervleilraelertmallGvksvaeldrs 344
                 ++G + v++  + l   l ++m  +G++++++ +++
  CCG91365.1 331 LYGPATVDDGSQNLVGALATSMGNVGAATIKQFQEA 366
                 57788888889999999***************9876 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   1.5   3.2e-10   8.1e-07       7     236 ..      47     302 ..      42     311 .. 0.66

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 3.2e-10
         NMO   7 llkikppvvqpgmggiskarLaaavsnaGgLGvla.sgylta..............DrlakeirkvkaltdkPfgvnlflpkkdaadra..ekykkele 88 
                  +k k p+ ++ m g++ +r+    s  Gg+Gv+   g++t               D+ +k  + ++++ ++P++  l + + +++ +     +   ++
  CCG91365.1  47 TIKLKIPILASAMDGVTDPRFCIEMSRLGGIGVINlEGIQTRyenpqevineiikcDQ-NKVTELLQKIYSAPVKEKLIVARIEELKKGnaIAAVSSIP 144
                 578899****************************998999988888777765444322.1222234556666888888877777666643222223344 PP

         NMO  89 eaal...elnieegvrfyrkvevvlde..kvevvsfgfglpteevva.rlkeagvvliptissvkearkvearG.aDalivqGpea.GGhqGtpevgdk 179
                 ++a+   ++++e g      + +v  +   v+ +s+       ++ +  ++  + vl++ + + + + +++  G   +li  Gp a    +G       
  CCG91365.1 145 QTAEtygYIAQEAGAD----LYIVQSTvsTVRHISTRYKTL--DLKQfCKNMRIPVLVGNAVTYNVVLELMDCGvSGVLIGVGPGAaCTSRGVLG---I 234
                 3333111445555555....222222212455555555444..3333033344445556666677777888888556777777644134555333...4 PP

         NMO 180 glfaLvpqvldavd...........iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesdakda 236
                 g  ++ ++v  a +           +P+i  GG+ ++ ++  a+a G  +v ig++f  ++e++ k  
  CCG91365.1 235 GVPQVTATVDAAAArdayykktgryVPIITDGGMRRGGDLCKAIACGSDAVMIGSAFARAEEAPGKGC 302
                 5666666666666677888******************************************9987765 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.015        38     165     203 ..     181     218 ..     155     227 .. 0.84
   2 !   21.4   0.0   4.9e-08   0.00013     175     213 ..     259     297 ..     250     308 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.015
                 HHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEE CS
        ThiG 165 ealkiiieeakvPvivDAGigspsdaaqamelGadavll 203
                   lk +++++++Pv+v   +   + + + m+ G+++vl+
  CCG91365.1 181 LDLKQFCKNMRIPVLVGNAVTY-NVVLELMDCGVSGVLI 218
                 4588999*********988865.568899********98 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 4.9e-08
                 SS-BEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSH CS
        ThiG 175 kvPvivDAGigspsdaaqamelGadavllntavaeakdp 213
                  vP+i D G+++  d ++a+  G dav++ +a a+a++ 
  CCG91365.1 259 YVPIITDGGMRRGGDLCKAIACGSDAVMIGSAFARAEEA 297
                 59**********************************975 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.5   1.4e-07   0.00037     239     306 ..     221     291 ..     176     315 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.4e-07
                   --SSEE.HHHHHHB---HHHHHHHHH..HHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHH CS
  Glu_synthase 239 GTGAsp.kssikhaGlPlelalaevd..qtlkeeglrdrvsliadGglktgadvvkalalGAdavgigtaa 306
                   G GA+     +   G+P ++a + +   +    ++  + v +i+dGg++ g d+ ka+a G dav ig+a 
    CCG91365.1 221 GPGAACtSRGVLGIGVPQVTATVDAAaaRDAYYKKTGRYVPIITDGGMRRGGDLCKAIACGSDAVMIGSAF 291
                   444443033455679999999876551145566788899*****************************974 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   5.2e-06     0.013     237     277 ..     252     292 ..     236     298 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.2e-06
                 HHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHH CS
      DHO_dh 237 lykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalv 277
                  yk++   +piI  GG+  g D    i +G  +v +++a+ 
  CCG91365.1 252 YYKKTGRYVPIITDGGMRRGGDLCKAIACGSDAVMIGSAFA 292
                 6899999*******************************985 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.5e-06     0.012     120     226 ..     105     225 ..      33     231 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.5e-06
  PEP_mutase 120 eefaekiaaaraaaeeagfvinARtdalll.....sagagleeaieRaraYaeAGAdgvfvpgl..........qkdaeiaelvaavdvplnvvplkgt 203
                 ++ +e ++++  +a+ ++ +i+AR++ l +     + ++  ++a + +   +eAGAd  +v +            k+ +++++++++++p+ v    + 
  CCG91365.1 105 NKVTELLQKIY-SAPVKEKLIVARIEELKKgnaiaAVSSIPQTAETYGYIAQEAGADLYIVQSTvstvrhistrYKTLDLKQFCKNMRIPVLVGNAVTY 202
                 33334444442.33455689*******9877666444444457777888899***********999999999888888899999999999988884444 PP

  PEP_mutase 204 lsvaelaelGvarislgnhllra 226
                   v el + Gv+ + +g  + +a
  CCG91365.1 203 NVVLELMDCGVSGVLIGVGPGAA 225
                 77899******999999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 2618.17
//
Query:       CCG91366.1  [L=265]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.096   13.1   0.0       0.16   12.4   0.0    1.3  1  TonB_C    Gram-negative bacterial TonB protein C-terminal


Domain annotation for each model (and alignments):
>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.8e-06      0.16      19      75 ..     195     249 ..     193     254 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.8e-06
                 EEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT-EE-TT--EEE......EEEE CS
      TonB_C  19 tveftidpdGnvtnvkvvkssgseiLdkaAleavrkwkfkpapkngkpvtvkitvpi 75 
                 ++ +++ pdG v+n+ + +s g e+ d  Al  vrk +f p p    + tv+ +++i
  CCG91366.1 195 KLVISVEPDGIVHNALLEESCGNEQADLLALSEVRKLHFAPDPLS--KRTVWGKIKI 249
                 57799**************************************98..5555554455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2132.59
//
Query:       CCG91367.1  [L=141]
Description: Biopolymer transport protein ExbD/TolR [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-14   54.8   0.3    1.1e-14   54.7   0.3    1.1  1  ExbD      Biopolymer transport protein ExbD/TolR
  ------ inclusion threshold ------
      0.067   13.2   0.0      0.088   12.8   0.0    1.2  1  Rad10     Binding domain of DNA repair protein Ercc1 (rad10/S


Domain annotation for each model (and alignments):
>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.3   1.2e-18   1.1e-14       7     117 ..       4     126 ..       1     138 [. 0.81

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.2e-18
        ExbD   7 einltpmiDvvflLLifFlvtaklkkpeplevdlPsssstqkeveekelirisisadgs.............iyldkkavsveelaqklkerkakppdk 92 
                 +in +p++ v++lLL+fFl+ +++++   + v+lP+s  + +    +  + + ++ +++             +y++++++++e+l++ + e+++++p++
  CCG91367.1   4 TINPVPLVTVILLLLFFFLLGSSFVTLPGIIVELPKSPFGISVPLSNLIVSVFLEPEKKdtstgfsakrevlFYVNDQELNFEDLKKMIPEFASQHPNQ 102
                 799*****************999999999************844444455566664433334555555668899************************* PP

        ExbD  93 ltvaikadkdvsygklvevldtlkk 117
                  +v+ikadk+v+ + ++e  +   +
  CCG91367.1 103 -MVIIKADKEVPQAYIIELTNLFLA 126
                 .***********9999998776554 PP

>> Rad10  Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.8e-06     0.088      38     102 ..      73     136 ..      47     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.8e-06
       Rad10  38 cvlflslkyhklhpeYieerlkklkkkyklrvlLvlvDvedseevlkeLnkicilndltlllaws 102
                  vlf  +   +l+ e +++ + ++ ++  ++++++  D e +++ + eL+++ + ++l++lla +
  CCG91367.1  73 EVLFY-VNDQELNFEDLKKMIPEFASQHPNQMVIIKADKEVPQAYIIELTNLFLAQNLSVLLATQ 136
                 55554.3457788888999999999999**********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1125.86
//
Query:       CCG91368.1  [L=256]
Description: MotA/TolQ/ExbB proton channel family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-29   99.8   1.1    1.4e-28   99.1   1.1    1.4  1  MotA_ExbB  MotA/TolQ/ExbB proton channel family
  ------ inclusion threshold ------
      0.027   12.8   0.0      0.036   12.5   0.0    1.1  1  Menin      Menin


Domain annotation for each model (and alignments):
>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   1.1   1.6e-32   1.4e-28      25     124 ..     113     213 ..      86     216 .. 0.91

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 1.6e-32
                 HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS.SGGCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB  25 eelrraleealsreeerlekglsilatigslaPllGLlGTVlGlieafqaladagsa.dlakvapgiaeALiaTalGlvvAipavlaynklkrkverlv 122
                  elr+a ++ ++ e+++le++l+il+ti+s++PllGLlGTV G+ieaf a++ a+ + +++ +a+gi+ AL++Ta+G+ vAip+ +ayn+l ++ + + 
  CCG91368.1 113 SELREAAKNVAQLEIPKLEAHLPILSTIASISPLLGLLGTVNGMIEAFLAMNRASGTvSVTDLASGIWMALVSTAAGISVAIPTQIAYNFLITRLSGIL 211
                 68999999********************************************655555*********************************99988776 PP

                 HH CS
   MotA_ExbB 123 le 124
                  +
  CCG91368.1 212 GD 213
                 65 PP

>> Menin  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     4e-06     0.036      26     105 ..     141     233 ..     132     247 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4e-06
       Menin  26 skiePdltllslvlGyvelslavgeaaqaaqaaaaava.........ggsdvvignsvP..fPvveleliaalykkfqa..ilsvvdkpkpar 105
                 ++i P l ll  v G +e +la+++a+ +   ++ a++         +g  v i++++   f +  l+ i +  ++  +  i + ++++ +++
  CCG91368.1 141 ASISPLLGLLGTVNGMIEAFLAMNRASGTVSVTDLASGiwmalvstaAGISVAIPTQIAynFLITRLSGILGDIERVSTelIHALIEYRWQNN 233
                 678999*******************99888888877777777777767788888888775556666666777777777776777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1786.88
//
Query:       CCG91369.1  [L=147]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 988.76
//
Query:       CCG91370.1  [L=253]
Description: Tetrapyrrole methyltransferase family enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-24   87.2   0.0    1.7e-24   87.0   0.0    1.1  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
  ------ inclusion threshold ------
       0.08   12.8   0.2       0.14   12.0   0.1    1.5  2  PRMT5         PRMT5 arginine-N-methyltransferase


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   1.9e-28   1.7e-24       1     210 [.      15     212 ..      15     215 .. 0.81

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 1.9e-28
  TP_methylase   1 klylVGvGpGdpellTvrAlralktadvvlgddsr.aleilldllaeeleleapmgkekepleea....yeeiaealaealragkdVvllv.sGDPl 91 
                   +l++VG+++G+ e++T +A+++lk++d+++++d+r al ++    +        + + k+pl +      e+ a+ l   l +gk+V+l++ +G+P+
    CCG91370.1  15 RLFVVGTPIGNLEDITYKAVKTLKEVDIIAAEDTRkALILI----Q--------KWEIKKPLFTYnkinEEKKASSLLNILLKGKKVALISeAGMPC 99 
                   589***************************99955333333....2........3344555555445447888888899999*************** PP

  TP_methylase  92 vygtgselvealrareagieveviPGvsslqaaaarlgiplteggevlsvllpglakeeereleallangdtlvllkaprklaelaelLkealyddt 188
                   ++++g +l++++ +  ++i++eviPG+s++  a   +g+  t ++   ++  +   k +++e+ + +++++  v +++p +l + +e+ +    +d 
    CCG91370.1 100 ISDPGERLIHKCIE--NNIPFEVIPGPSAVLQALLLSGFKTTPFYFGGFLPIK--TKARQAEWLQSAERPYASVYFESPYRLISSLEDAQLT-IPDC 191
                   *************9..9*************************99999999823..33588888899999*******9999633333333333.3544 PP

  TP_methylase 189 tpvavveragtedervvrgtle 210
                     + +v++++++ e+v+rg+ +
    CCG91370.1 192 -MLCIVKEMTKKFEEVFRGRPK 212
                   .8***************99765 PP

>> PRMT5  PRMT5 arginine-N-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.6e-05      0.14      60     112 ..       8      58 ..       1      75 [. 0.82
   2 ?   -3.7   0.0         1   9.3e+03     146     166 ..     178     199 ..     177     203 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
                 TCC.-EEEEEEES-TTSHHHHHHHHHHHHHCCCEEEEEEEES-HHHHHHHHHH CS
       PRMT5  60 kksekklvilvvGaGRGplvdralkaleetkvtkvkivavEKnpnavvtLqkk 112
                 ++++    ++vvG+  G l d ++ka+++ k  +v+i+a E  ++a++++qk 
  CCG91370.1   8 TRNNLIGRLFVVGTPIGNLEDITYKAVKTLK--EVDIIAAEDTRKALILIQKW 58 
                 3333445689*******************99..***************99876 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1
                 -BTTBCCCSH.HHHHHCCGGGC CS
       PRMT5 146 LGSfgdnELs.PEcldgvqkfl 166
                 + S+ d  L+ P+c+  + k +
  CCG91370.1 178 ISSLEDAQLTiPDCMLCIVKEM 199
                 6677777774499988776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1896.77
//
Query:       CCG91371.1  [L=264]
Description: SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-24   85.8   0.0      5e-24   84.8   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    4.4e-23   81.8   0.1    1.1e-22   80.6   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    5.7e-22   78.1   0.0      8e-22   77.7   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    1.1e-17   64.4   0.0    1.6e-17   63.8   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    2.8e-17   62.8   0.0    4.9e-17   62.0   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    6.2e-14   52.5   0.0    1.4e-13   51.4   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
    7.5e-08   32.0   0.5    1.9e-07   30.7   0.1    1.8  2  CMAS             Mycolic acid cyclopropane synthetase
      3e-07   30.2   0.0    4.8e-07   29.5   0.0    1.3  1  MTS              Methyltransferase small domain
    9.3e-07   27.8   0.0    1.3e-06   27.3   0.0    1.2  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
    5.6e-05   22.6   0.1     0.0001   21.8   0.1    1.4  1  TehB             Tellurite resistance protein TehB
    9.8e-05   22.0   0.0    0.00014   21.5   0.0    1.2  1  Methyltransf_PK  AdoMet dependent proline di-methyltransferas
    0.00093   19.1   0.0     0.0017   18.3   0.0    1.4  1  Methyltransf_18  Methyltransferase domain
     0.0032   16.6   0.1     0.0052   15.9   0.0    1.4  2  RrnaAD           Ribosomal RNA adenine dimethylase
     0.0043   16.8   0.0      0.008   16.0   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
  ------ inclusion threshold ------
      0.016   15.2   0.0      0.028   14.4   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
       0.08   12.6   0.0       0.13   11.9   0.0    1.4  1  TPMT             Thiopurine S-methyltransferase (TPMT)


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   4.5e-27     5e-24       1      96 []      54     149 ..      54     149 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 4.5e-27
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      Ld+++G+G+ a  la++g +v+++D++++ml+ ak+ a e++  ++fv  +aeklp++++sfDlv+++ + hh+ d++++++e aRvLk++Gl+
       CCG91371.1  54 LDIATGNGYTAFFLAEHGLEVTACDITENMLEGAKKTAIEKNYDIKFVLHSAEKLPYPNESFDLVCCRYAAHHFGDQKAFVRESARVLKKNGLF 147
                      8*********************************9999999889*************************************************9 PP

                      EE CS
  Methyltransf_11  95 vi 96 
                      v+
       CCG91371.1 148 VL 149
                      85 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   9.4e-26   1.1e-22       2      97 .]      54     145 ..      53     145 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 9.4e-26
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkp 95 
                      Ld+++G+G +++ la+++   +vt++Di+e+mle a++ a e++++++fv ++ae+lp++++sfDlv++++a hh+   d++++++e arvLk+
       CCG91371.1  54 LDIATGNGYTAFFLAEHG--LEVTACDITENMLEGAKKTAIEKNYDIKFVLHSAEKLPYPNESFDLVCCRYAAHHFG--DQKAFVRESARVLKK 143
                      9****************5..********************************************************9..677************ PP

                      EE CS
  Methyltransf_25  96 gG 97 
                      +G
       CCG91371.1 144 NG 145
                      99 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   7.2e-25     8e-22       2     127 ..      48     173 ..      47     234 .. 0.75

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 7.2e-25
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkile 95 
                      +kg++ lD+++G+G+ +f lae    + ev+  Di+e+++e A++ a ++++d ++F   ++e+l+  +  e+fDl++++ + +++ d++++ +
       CCG91371.1  48 QKGMKALDIATGNGYTAFFLAEH---GLEVTACDITENMLEGAKKTAIEKNYD-IKFVLHSAEKLP--YPNESFDLVCCRYAAHHFGDQKAFVR 135
                      799******************54...568***********************8.************..************************** PP

  Methyltransf_31  96 eiervlkpggilliedpr.......llaelpakveeesk 127
                      e  rvlk++g +++ d         + +e ++ ve+ ++
       CCG91371.1 136 ESARVLKKNGLFVLIDGTvpngaseA-YEWLDRVEKLRD 173
                      ****************9977755531.222233333333 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   1.4e-20   1.6e-17      12     164 ..      37     198 ..      24     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 1.4e-20
  Methyltransf_23  12 klerllpk..lraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.....kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdp 98 
                       le++++   l++g++ Ldi++G G+++  l+e+g +vt+ D+ +++ e a+     k +  +++ + +++ ++p+++fdl+++r+  +h+ d 
       CCG91371.1  37 DLEKTFEDikLQKGMKALDIATGNGYTAFFLAEHGLEVTACDITENMLEGAKktaieKNYDIKFVLHSAEKLPYPNESFDLVCCRYAAHHFGDQ 130
                      455556445589999************************************99999988888899999999999******************** PP

  Methyltransf_23  99 pellrqiatllkpgGylllse...plaslkedrllldwlylvpagrhi.sffsarslkelleeaGlevve 164
                       + +r  a+ lk +G+++l +   p+  +++ ++l+ ++ l++   h+ + f  +++ke ++eaGle v+
       CCG91371.1 131 KAFVRESARVLKKNGLFVLIDgtvPNGASEAYEWLDRVEKLRDF-SHVgYRFE-SEWKEYCREAGLEPVK 198
                      *******************9988777777999999999999999.66625555.8************885 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   4.4e-20   4.9e-17      42     155 ..      44     153 ..      11     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 4.4e-20
                      H--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHH CS
  Ubie_methyltran  42 lvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklka 135
                          ++g k+lD+a+G g  af l+++     +v+ +Di enmL+ ++k + e   ++i+f+  +ae+Lp+ ++sfD+v   +    + D++  
       CCG91371.1  44 DIKLQKGMKALDIATGNGYTAFFLAEH---GLEVTACDITENMLEGAKKTAIE-KNYDIKFVLHSAEKLPYPNESFDLVCCRYAAHHFGDQKAF 133
                      4456789***************99876...568***********977766665.5679************************************ PP

                      HHHHHHHEEEEEEEEEEEE- CS
  Ubie_methyltran 136 LkeayrvlkpGGrlvvlefs 155
                      ++e  rvlk  G +v ++ +
       CCG91371.1 134 VRESARVLKKNGLFVLIDGT 153
                      *************9998755 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   1.3e-16   1.4e-13       1      99 []      54     147 ..      54     147 .. 0.93

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 1.3e-16
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L+i +G+G +++ l+e+  ++e+t++Di ++++   ++k+a ++n++ ++v   a+ l      +sfDlv +  + hh+ d ++++++ +++Lk
       CCG91371.1  54 LDIATGNGYTAFFLAEH--GLEVTACDITENML-EGAKKTAIEKNYDIKFVLHSAEKLPYPN--ESFDLVCCRYAAHHFGDQKAFVRESARVLK 142
                      8****************..**************.8888888889999999999999987554..5***************************** PP

  Methyltransf_12  95 pgGrl 99 
                      ++G +
       CCG91371.1 143 KNGLF 147
                      ***75 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1   1.7e-10   1.9e-07      31     164 ..      20     149 ..      12     168 .. 0.83
   2 ?   -2.0   0.0       1.6   1.7e+03      94     123 ..     219     247 ..     216     249 .. 0.71

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.7e-10
                 -S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-...-- CS
        CMAS  31 YsCAyferddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedl...de 126
                  sCA + ++ + L++   + l+ ++e ++l++Gm+ Ldi +G G+++   +e+ + +v +  + ++  + akk+  e + + k  ++    e l   +e
  CCG91371.1  20 SSCASYYQKGHILKNT--EDLEKTFEDIKLQKGMKALDIATGNGYTAFFLAEH-GLEVTACDITENMLEGAKKTAIEKNYDIKFVLHS--AEKLpypNE 113
                 59**999999999975..67899************************999998.*****************99877776555544444..444411256 PP

                 --SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEE CS
        CMAS 127 kvdrvvsvgafehvgkenydtffkklkkllkedGllll 164
                  +d v    a  h+g +  ++f+++  ++lk++Gl++l
  CCG91371.1 114 SFDLVCCRYAAHHFGDQ--KAFVRESARVLKKNGLFVL 149
                 9**************98..59**************987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
                 -HHHHHHHHHHHHTS-SSS-EEEEES-GGG CS
        CMAS  94 Skeqaklakkrvdeldlerkvevklldyed 123
                 S e+++   k+v+e+  er ++v+  ++ed
  CCG91371.1 219 SVENQQAIYKMVQEAS-ERVKKVLKIGWED 247
                 5555566667777765.7888899999987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   4.3e-10   4.8e-07      26     138 ..      41     150 ..      17     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 4.3e-10
                 HCHCC...TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTT.TSTTS-EEEEEE---STTTCHCHHHHHHH CS
         MTS  26 tlpke...lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvle.eveekkfdlivsNPPfhagkatelavaee 120
                 t+++    +  k+lD+++G+G+ +  la++  e  vt++d+  + le ak+++ +++ ++++v +++ +   ++++fdl+ +    h+  +      ++
  CCG91371.1  41 TFEDIklqKGMKALDIATGNGYTAFFLAEHGLE--VTACDITENMLEGAKKTAIEKNYDIKFVLHSAEKlPYPNESFDLVCCRYAAHHFGD-----QKA 132
                 555444436778****************97655..************************998877766525669********877777666.....799 PP

                 HHHHHHHHEEEEEEEEEE CS
         MTS 121 liaeAkeaLkegGeLliV 138
                 +++e++++Lk++G ++++
  CCG91371.1 133 FVRESARVLKKNGLFVLI 150
                 *************88776 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.1e-09   1.3e-06      74     223 ..       5     155 ..       1     180 [. 0.71

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.1e-09
  Methyltransf_29  74 kqnWvkk.egeklkfPgggtqfkkg.adkYidklaelipliaaggkvrtvlDvGCgvasfgayll.sr..dvltlslapkDeheaqvqfaLeRg 162
                      ++n +++ +  + +f      ++kg + k  ++l+++ ++i+ ++ ++ +lD+  g   ++a++l ++  +v++  ++ ++  e   + a+e+ 
       CCG91371.1   5 ENNIIESqQRSRSHFSSCASYYQKGhILKNTEDLEKTFEDIKLQKGMK-ALDIATGNG-YTAFFLaEHglEVTACDIT-ENMLEGAKKTAIEKN 95 
                      555554413456677777777777745788899999999998887775.799988865.5555440441134444444.44566777899***9 PP

  Methyltransf_29 163 vpailavlgtkrlpyPsrsfdlihCsrCridwteedgilllevdRvlRpgGyfvlsappvy 223
                            + ++++lpyP +sfdl+ C r   ++  ++ +++ e  Rvl+ +G fvl    v 
       CCG91371.1  96 YDIKFVLHSAEKLPYPNESFDLVCC-RYAAHHFGDQKAFVRESARVLKKNGLFVLIDGTVP 155
                      99999999**************966.55666666677899**************9776665 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1     9e-08    0.0001       8      81 ..      25      99 ..      20     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 9e-08
                HHHHHHT----..-HHHHHHCCCS-S-EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-TTEE CS
        TehB  8 yfskkynltat..hsevveavkivkpgkvldlgcgqgrnslylsllgydvtawdknensiafleeikekenlknis 81
                y++k + l +t    +  e +k+ k  k+ld+  g+g  +++l+  g +vta d  en ++  ++++  +n + i+
  CCG91371.1 25 YYQKGHILKNTedLEKTFEDIKLQKGMKALDIATGNGYTAFFLAEHGLEVTACDITENMLEGAKKTAIEKNYD-IK 99
                5555554433310456788999************************************999998888777766.55 PP

>> Methyltransf_PK  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.2e-07   0.00014      52     168 ..      46     158 ..      32     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.2e-07
  Methyltransf_PK  52 gkrevkvaldcGaGiGrvtknlLlkllskvDlvepvekflekakeelaeekkkvgkvyvvglqeftPeegrYdliWiqWcvghLtDedlvaflk 145
                      + ++   ald+ +G G  t  +L ++  +v   + +e++le ak++  e k+   k+   + ++    ++++dl+ +++   h+ D++  af++
       CCG91371.1  46 KLQKGMKALDIATGNGY-TAFFLAEHGLEVTACDITENMLEGAKKTAIE-KNYDIKFVLHSAEKLPYPNESFDLVCCRYAAHHFGDQK--AFVR 135
                      45666789999999995.8899*********************966555.666777777778888778999***************98..8*** PP

  Methyltransf_PK 146 rckkalkpnGlivvkenvakeek 168
                       +++ lk+nGl+v+ + +  ++ 
       CCG91371.1 136 ESARVLKKNGLFVLIDGTVPNGA 158
                      **************997766654 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.5e-06    0.0017      13      73 ..      48     104 ..      36     120 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.5e-06
  Methyltransf_18  13 ekgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsd 73 
                      +kg + +Di t  gy +++l+++g    v+a+Di e+ le ak+++ +++++  i+++l +
       CCG91371.1  48 QKGMKALDIATGNGYTAFFLAEHGLE--VTACDITENMLEGAKKTAIEKNYD--IKFVLHS 104
                      578899***************99875..*****************9998874..5555554 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.6e-06    0.0052      10      79 ..      29      99 ..      23     160 .. 0.87
   2 ?   -4.1   0.1       5.8   6.5e+03      56      73 ..     218     235 ..     218     242 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.6e-06
                --EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT.TCCCEE CS
      RrnaAD 10 qnflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls.kdeklk 79
                 ++lkn+  +++ ++ ++l++ ++ l+i++G G +   La+   +v++  + e++++  +k+   k+  +k
  CCG91371.1 29 GHILKNTEDLEKTFEDIKLQKGMKALDIATGNGYTAFFLAEHGLEVTACDITENMLEGAKKTAIeKNYDIK 99
                589****************************************************9998885433555555 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 5.8
                 EEE-S-HHHHHHHHCHTT CS
      RrnaAD  56 vvlElderLakllqkkls 73 
                 +++E+ ++++k++q++ +
  CCG91371.1 218 TSVENQQAIYKMVQEASE 235
                 678888888888888433 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   7.1e-06     0.008      66     116 ..      42      89 ..      27     116 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.1e-06
                 HHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHH CS
        PCMT  66 lellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakr 116
                  e ++l+kg+++L++ +G Gy +  la+       v + + ++++ e ak+
  CCG91371.1  42 FEDIKLQKGMKALDIATGNGYTAFFLAEHGL---EVTACDITENMLEGAKK 89 
                 56789****************9988876432...33355555555555555 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.5e-05     0.028      16      74 ..      41      94 ..      27     115 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.5e-05
  Methyltransf_32 16 llkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraekl 74
                     ++++  k ++ ++ +D++ G+gY +f la     ++l+v++ d+ e++ e a+k a + 
       CCG91371.1 41 TFED-IKLQKGMKALDIATGNGYTAFFLAE----HGLEVTACDITENMLEGAKKTAIEK 94
                     4444.3556678889***************....7***************999987554 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.13      23     104 ..      35     120 ..      26     150 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
                 -HHHHHHHHT.T-S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHHHTT...SGGGGGEEEE--............ CS
        TPMT  23 npllkkfldalkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffeeanl...epkvkelsgvke.ysageiellcg 104
                 ++ l k +++ k+++g ++l    G+++ +  lAe+g ev + ++ e+ +e + ++a +     k    s+ k  y  ++ +l+c+
  CCG91371.1  35 TEDLEKTFEDIKLQKGMKALDIATGNGYTAFFLAEHGLEVTACDITENMLEGAKKTAIEknyDIKFVLHSAEKLpYPNESFDLVCC 120
                 67899999999*************************************99987665554211222333333333566666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       892  (0.0497518); expected 358.6 (0.02)
Passed bias filter:                      725  (0.0404373); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 1765.45
//
Query:       CCG91372.1  [L=456]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0088   16.2   0.0       0.15   12.2   0.0    2.6  3  DUF748    Domain of Unknown Function (DUF748)
  ------ inclusion threshold ------
       0.26   11.4   1.9       0.44   10.6   0.3    2.2  2  RAMP4     Ribosome associated membrane protein RAMP4


Domain annotation for each model (and alignments):
>> DUF748  Domain of Unknown Function (DUF748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         1   9.1e+03       3      17 ..     151     165 ..     150     166 .. 0.79
   2 !   12.2   0.0   1.7e-05      0.15      32      89 ..     210     265 ..     201     309 .. 0.73
   3 ?    0.7   0.0     0.059   5.2e+02      28      79 ..     323     374 ..     316     378 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1
      DUF748   3 vsidrlaltdgsvaf 17 
                 vsi+++++++ s+++
  CCG91372.1 151 VSIEKISIKNLSLSW 165
                 688899998888876 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.7e-05
      DUF748  32 elnltlsnlsslpeqpadvelsgavnkggplqisGtlnplplase.lelslkgldLapl 89 
                 ++++ l++ s    + +d +l+ +++ ++++ i+G l + p++++ l+lsl +++L  +
  CCG91372.1 210 NIKGLLTKTS---FEVSDATLHLKSDPKATVLIQGVLALVPPQKThLNLSLHQIPLDSI 265
                 3333333333...4458999*********************88888*********9876 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.059
      DUF748  28 ltlselnltlsnls.slpeqpadvelsgavnkggplqisGtlnplplaselel 79 
                 ++l+++ lt+ ++  +l++ ++++  +  +++  +++++G++++  +  +++l
  CCG91372.1 323 HRLEDIPLTVAHFLvTLEPNTIKLH-HIDWQSEDTMKLTGWVTLVEKNVTGTL 374
                 7888888999666436665555555.78888889999****999887777665 PP

>> RAMP4  Ribosome associated membrane protein RAMP4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   4.9e-05      0.44      28      46 ..       2      20 ..       1      28 [. 0.91
   2 ?   -1.6   0.1      0.32   2.9e+03      25      42 ..      75      93 ..      71      94 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.9e-05
       RAMP4 28 kkkekkspvgpwlLglfiF 46
                k++ kk+ v+p+lL+++iF
  CCG91372.1  2 KQQGKKKRVSPILLFFLIF 20
                6899**************9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.32
       RAMP4 25 kslk.kkekkspvgpwlLg 42
                +s+k k +k+sp+  ++++
  CCG91372.1 75 SSYKgKGKKESPIASIAIA 93
                56678999999*9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3287.05
//
Query:       CCG91373.1  [L=839]
Description: Glucan phosphorylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-27   96.2   0.0    7.3e-18   64.2   0.0    3.4  3  Phosphorylase  Carbohydrate phosphorylase
    5.4e-26   91.2   1.0    1.5e-25   89.7   1.0    1.8  1  DUF3417        Protein of unknown function (DUF3417)
  ------ inclusion threshold ------
      0.024   14.1   0.0      0.041   13.3   0.0    1.2  1  Capsule_synth  Capsule polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Phosphorylase  Carbohydrate phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.2   3.6e-10   2.1e-06      22      67 ..     121     167 ..     109     246 .. 0.90
   2 !   64.2   0.0   1.2e-21   7.3e-18     218     577 ..     266     616 ..     242     623 .. 0.75
   3 ?    0.7   0.0      0.02   1.2e+02     679     707 ..     672     701 ..     651     704 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.6e-10
                    SSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEE.ETTEEEEE CS
  Phosphorylase  22 nGGLGRLAacfldslatlelpavGygirYeyGlFkQki.edgaqvee 67 
                     GGLG LA  +l +++ l+lp+vG+g+ Y+ G F+Q i ++g q+e 
     CCG91373.1 121 SGGLGILAGDYLKAASDLGLPVVGIGLLYQQGYFRQLIdSNGEQIEF 167
                    6*************************************889999995 PP

  == domain 2  score: 64.2 bits;  conditional E-value: 1.2e-21
                    EEEEEESSTTTTHHHHHHHHHHHCC.---HHHHHHHHCCCEEEEE--SSGGGS-EEEHHHHHHHSHHHHHHHHHHHHHHHHHHHHHSTT-HHHHHH CS
  Phosphorylase 218 vaiqlnDtHPalaipelmriLvdee.glewdeaweitkktfaytnhtvlpealekwpvellekllprhleiieeinerfleevekklpedeekler 312
                     + +ln+ H a+ai e  +  +++  + ++ +a+  t+    +t ht ++   ++++ +l++k +    + ++    + l  + +++ +       
     CCG91373.1 266 NICHLNEGHAAFAIFERAKDCMKKMpSSSFWTALWATRCGNLFTTHTPVEAGFDRFSPALFKKYFSDFAQEVQV-PIEDLLALGQQYRG------- 353
                    46789999999999998887666541566677777777778899999999999999999999998876655432.22222233333333....... PP

                    HSSEETSCEEEHHHHHHHCCSEEEESSHHHHHHHHHTTTHHHHHHSGG...GEEE----B-CHHHCCCTSHHHHHHHHHHCSSGGCCSGGGGGGGG CS
  Phosphorylase 313 lsiieeekkvrmanlaivgshsvngvaalhsellkkevlkdfyelype...kfnnktnGitprrwlllanpelaelitekigeewvkdleeLkkLe 405
                         +e+  +ma+lai gs ++ngv++lh ++  +++++     +p+       +tnG+    w  +   el + i  k   +w + +e+L +  
     CCG91373.1 354 -----QEEPFNMAYLAIRGSAATNGVSKLHGKV-SQRIFQGLFPRWPTwqiPVGSVTNGVHVPTWHSVETDELWSSICGK--YRWRQPTETLGDKF 441
                    .....367899*******************985.677888877776652115789***********99999998888654..68999999998888 PP

                    GGCCSHHHHHHHHHHHH......HHHHHH.HHHHHHHHSS---TTSEEEEEE......S-SCCCCTHHHHHHHHHHHHHHHHHSTTS----EEEEE CS
  Phosphorylase 406 kladdkefleelaeikq......enKerl.aelikekegvevdpeslfdvqv......kRlheYkRqlLnvLhiitlYneikenpekkvvprtvif 488
                    + a+d ++le  ++ +       ++++r  ++++ ++e++  +   lfd +v      +R+  YkR +L +Lh  ++  +i ++p     p  +++
     CCG91373.1 442 RSANDCTLLEWRKKNRLklilslRKRSRChCAMLGKQEHTMSQCVCLFDPNVltigfaRRFASYKRPTL-LLHDKERLIKILTHP---QRPVQLVV 533
                    88888877653332222112222223333134444555555556677887654444449*********9.688888888998888...78999*** PP

                    E----TT-HHHHHHHHHHHHHHHHHCC-TTTCCCEEEEEETT-SHHHHHHHGGG-SEEEE---TTTSSS-SHHHHHHHTT-EEEEESST CS
  Phosphorylase 489 ggkaapgYalAkkiiklinsvaevvnndpevkdklkvvflenynvslaekiipaadlseqistagkeASGTgnmkfmlnGaltigtlDG 577
                    +gka p   + k++ik      + v + + +++  +vvf+e+y++ la  ++ + dl  +      eASGT+ mk+  nG+l ++ lDG
     CCG91373.1 534 AGKAHPQDRIGKAMIKE---WTDFVARKE-LHN--RVVFVEDYDMRLALDLVQGIDLWINNPRRPWEASGTSGMKVLANGGLNLSELDG 616
                    ************99885...556666544.444..69***************************************************9 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.02
                    HHHHHHHHHHHHCGG.GGBHHHHHHHHHHH CS
  Phosphorylase 679 kewakksilniaksg.kFssDrtikeYaee 707
                    k+w +++  +i++   +Fs++r ++eY+++
     CCG91373.1 672 KKWVNMMRESISRLTpYFSTNRMVREYTTD 701
                    79*********997538**********987 PP

>> DUF3417  Protein of unknown function (DUF3417)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   1.0   2.5e-29   1.5e-25       1     109 []      11     117 ..      11     117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 2.5e-29
     DUF3417   1 lpeeLekLeeLaknlwwswneeareLFksldpelweevghnPvklLeevsqerleelaedeeflarleavveefeeyleektwfqkkaeeekkeaiAYF 99 
                 lpeeL+ Le++a+++ w+  +  r+L+++++p+lwe+ ++nP+ +Le++s+e+++el++deefl+ ++  +ee ++y+eektwf+++     k +iAYF
  CCG91373.1  11 LPEELKGLEDIASDMLWHTVSGSRRLWRKVNPQLWET-TSNPWFILESLSKEKMKELSQDEEFLSLFRCQLEERKRYFEEKTWFESNF-PYFKGNIAYF 107
                 8**********************************99.99***********************************************9.577889**** PP

     DUF3417 100 saEfGlhesL 109
                 s+EfGl e L
  CCG91373.1 108 SMEFGLGEEL 117
                 ******8865 PP

>> Capsule_synth  Capsule polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.8e-06     0.041     185     240 ..     528     582 ..     516     587 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.8e-06
  Capsule_synth 185 padaeliiKtHPldeglikyrrvikgyltelaalkkrvllvedvnlpsLldqvdgv 240
                    p +  ++ K HP d+ ++   +  +++++  ++l++rv++ved+++   ld v+g+
     CCG91373.1 528 PVQLVVAGKAHPQDRIGKAMIKEWTDFVAR-KELHNRVVFVEDYDMRLALDLVQGI 582
                    66666777**********************.5**************9999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 5506.19
//
Query:       CCG91374.1  [L=220]
Description: Ca2+/H+ antiporter (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-20   71.7  11.1    6.3e-20   71.7  11.1    1.9  2  Na_Ca_ex      Sodium/calcium exchanger protein
  ------ inclusion threshold ------
       0.18   11.3   0.1       0.29   10.7   0.1    1.3  1  CD34_antigen  CD34/Podocalyxin family


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.2     0.024   2.2e+02     105     131 ..      15      41 ..       2      47 .. 0.65
   2 !   71.7  11.1     7e-24   6.3e-20       3     151 .]      50     203 ..      48     203 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.024
                 HHHHHHHHHHHHHHHTCHHHHHHTEEH CS
    Na_Ca_ex 105 llllvallllllvlllllplfvpgrlt 131
                 ll+    +++++v+l++l++fv+grl+
  CCG91374.1  15 LLFANKSVVFSIVSLFVLLFFVKGRLS 41 
                 444444455566777777777888876 PP

  == domain 2  score: 71.7 bits;  conditional E-value: 7e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECC CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltge.vdlaignvlGsnifnlllviGlialigslkvdseslk 100
                 ++ f++++ l+ + +++ v++ae++a   +  g+++G ++l+++ +++E+ s+   + +ge  + a+++++++++++l+++iG+++l+g+  +++e+ k
  CCG91374.1  50 LISFFWFFSLVLANSFVSVKHAEKLA---KHYGEPYGSLILTFAATAIEFSSIWDIMSSGEnLTFARDTIYSVIMIILGGMIGTVLLVGG-IYHKEQ-K 143
                 57899*********************...89999*************************999****************************.888889.9 PP

                 HHH.HHHHHHHHHHHHHHHHTCHHHHH........HTEEHHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 101 ldl.gllllvallllllvlllllplfv........pgrltvleglvllllYalylvlslv 151
                 ++l g+  ++++++ l+vl+l+lp+f+        ++ +t++  +++l+lY+l+lv+++v
  CCG91374.1 144 INLeGARAFISVIVPLAVLILILPNFTrstpgpifSKFQTLFYMFACLFLYLLFLVVQTV 203
                 9********************************************************985 PP

>> CD34_antigen  CD34/Podocalyxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   3.3e-05      0.29     108     129 ..     119     140 ..     104     145 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.3e-05
  CD34_antigen 108 lialvtsglllaiLlvagyYgc 129
                   +i ++++g++  +Llv+g+Y +
    CCG91374.1 119 VIMIILGGMIGTVLLVGGIYHK 140
                   89******************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1729.69
//
Query:       CCG91375.1  [L=164]
Description: Ca2+/H+ antiporter (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-11   44.7  17.0    1.5e-11   44.5  17.0    1.0  1  Na_Ca_ex  Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5  17.0   8.4e-16   1.5e-11       3     149 ..      22     162 ..      20     163 .. 0.85

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 8.4e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkl 101
                 ++++++sll+++++a+ l   +e+  ++++ + +v+G +l+Al + lpE +++i aa+ +  + +++ +lGs+++ ++l+++li+ ++    +s+sl+l
  CCG91375.1  22 VLMLVVSLLFVVFFAEKLAFPIEYAIEKMKAP-KVVGGFLIALLVLLPESLTAIEAAICNGLQRSVNILLGSVCATIGLTLPLILAFS--LLKSSSLIL 117
                 789****************9999999755555.5*****************************************************4..566667677 PP

                 HHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 102 dlgllllvallllllvlllllplfvpgrltvleglvllllYalylvls 149
                  l + + ++ll+l l+l  + ++f  g+ ++l+g+v+lll++ yl+++
  CCG91375.1 118 GL-GQVEATLLVLTLLL--CQITFSGGKTNILQGAVHLLLFFSYLIMM 162
                 77.54566666644444..5566679******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1285.86
//
Query:       CCG91376.1  [L=787]
Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   7.5e-155  515.1   0.0   8.3e-150  498.5   0.0    2.3  2  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   5.7e-120  400.6   0.0   6.1e-110  367.6   0.0    2.9  3  Meth_synt_1  Cobalamin-independent synthase, N-terminal domai


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.2e-06      0.02     124     305 ..     168     343 ..     155     359 .. 0.87
   2 !  498.5   0.0  9.2e-154  8.3e-150       1     323 [.     445     767 ..     445     768 .. 1.00

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-06
                  EEEEE-HHHHHHTSEE-TTS-HHHHHHHHHHHHHHHHH.HHHHTT-SEEEEE-TTSSTT--SSGGGHHHHHHHHHHHHHHHHTTS-TTSEEEEEES-S CS
  Meth_synt_2 124 kglltGpvtilnwsfvrddvdraeaaaqialalrdevk.dLeaaGikviQiDepalreGlplkkadwaayldwaveafrldtiaaaddtqvhtHlCys 220
                  k +l Gp+++l  +  +d+  +++ +++  l + +e+  +  + G+  i +Dep l   +p++   ++a++d      rl++ + a ++ ++t +   
   CCG91376.1 168 KPILLGPISLLFLGKKKDPSIKNAELFEKILPIYEEILkEFYSLGADWIEFDEPILTLDIPTEW--QKAFYDV---YPRLKQKVPALKILLATYFGPL 260
                  56999**************999999999999999887669********************9988..5666664...46999**99*******999876 PP

                  --CCCHHHHHTT--SEEEESBSSS-SSGGGGTTTT---SEEEEBSS-TTSSS--THHHHHHHHHCHHCTS-STSB-BB-SS-STT CS
  Meth_synt_2 221 elndilsaiaaldvDvitieasrsdeellealeevkygrgvglGvydihsprvpsmeeiaalikkaldvapkerlwvnPdCGLkt 305
                  + n     +  + +D +  +  r  +el   l++++ ++   lG++d      +   +  + i++ald +p e lw  P C L+ 
   CCG91376.1 261 KENRE--IVVSIPIDGLHYDWTRGGQELYGLLQNWDKNKVFSLGIVDGRNIWKNDFSKSLKVIHSALDYIPSESLWLAPSCSLHF 343
                  66655..68999*************9*********************988877777777889*******************9975 PP

  == domain 2  score: 498.5 bits;  conditional E-value: 9.2e-154
                  S-BB--SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHHTTSTTEE--SS--EEEETTEEE---EE- CS
  Meth_synt_2   1 lpTttiGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfgealdgfaftkngwvqsygsrcvrppiiv 98 
                  +pTttiGSfPqt+e+r++r +++ g++s+e ye++i+eei++vv+ qee+g+Dvlvhge+eR+dmveyfge+l+gf+ t+ngwvqsygsrcv+ppii+
   CCG91376.1 445 FPTTTIGSFPQTTEIRRIRSRFRLGSISQEAYETFIEEEIKRVVELQEEIGLDVLVHGEFERTDMVEYFGEKLNGFLITENGWVQSYGSRCVKPPIIF 542
                  8************************************************************************************************* PP

                  SS---SS-SSTHHHHHHTTS-SS-BEEEEE-HHHHHHTSEE-TTS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-TTSSTT--SSGGGHHHHHHHH CS
  Meth_synt_2  99 gdvsrpaamtvkesalaqsltdkpvkglltGpvtilnwsfvrddvdraeaaaqialalrdevkdLeaaGikviQiDepalreGlplkkadwaayldwa 196
                  gdvsr++amt+++s+ aqslt+kp+kg+ltGp+til+wsf rdd++r+ +a+qiala+r+evk+Le+ Gi viQiDepalre lpl+k dw+ yl+wa
   CCG91376.1 543 GDVSRKEAMTIRWSKFAQSLTKKPMKGMLTGPITILQWSFARDDQPRKITAKQIALAIREEVKELEKNGIGVIQIDEPALREALPLRKIDWEDYLQWA 640
                  ************************************************************************************************** PP

                  HHHHHHHHTTS-TTSEEEEEES-S--CCCHHHHHTT--SEEEESBSSS-SSGGGGTTTT---SEEEEBSS-TTSSS--THHHHHHHHHCHHCTS-STS CS
  Meth_synt_2 197 veafrldtiaaaddtqvhtHlCyselndilsaiaaldvDvitieasrsdeellealeevkygrgvglGvydihsprvpsmeeiaalikkaldvapker 294
                   e+fr++++ ++d+tq+htH+Cyse+ dil+aia+ld+Dvi++easrs  el++++++++y++++glGv+dihspr+p++ee+ a+++kal ++pke 
   CCG91376.1 641 IESFRIASCCVEDSTQIHTHMCYSEFGDILEAIAKLDADVISLEASRSGFELINSFAKFRYPNDIGLGVWDIHSPRIPTTEEMLATLRKALSALPKES 738
                  ************************************************************************************************** PP

                  B-BB-SS-STTS-HHHHHHHHHHHHHHHH CS
  Meth_synt_2 295 lwvnPdCGLktrkreearaalknmvdaAk 323
                  lwvnPdCGLktr+++e++++lknmv+aA+
   CCG91376.1 739 LWVNPDCGLKTRSYQEVIPSLKNMVEAAR 767
                  ***************************96 PP

>> Meth_synt_1  Cobalamin-independent synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.6   0.0  6.8e-114  6.1e-110       2     308 ..      10     324 ..       9     329 .. 0.97
   2 ?    0.4   0.0     0.041   3.7e+02      14      66 ..     457     509 ..     447     512 .. 0.85
   3 !   28.6   0.0   1.1e-10   9.5e-07     148     280 ..     565     704 ..     544     731 .. 0.81

  Alignments for each domain:
  == domain 1  score: 367.6 bits;  conditional E-value: 6.8e-114
                  EB-S---SSTTTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES---SS-HHHHHHHHTT---GGGTT.SSSSSHHHHHHHHHS CS
  Meth_synt_1   2 ssilGfPriGekRelkkalesywkgkiseeeLektakeLrakhwkkqkeagidlipvndfslYDhvLdtavllgaiPerfkleekkeeldtyFalaRG 99 
                  ++ilG+PriG++R lk+ale+ywkg++s ++L +tak+++++ w+kq++a+i+++++ndfs+YDhvLd+ +l+ga+P+rfk  ++  +ld +F++aRG
   CCG91376.1  10 THILGYPRIGSNRQLKFALEAYWKGESSLHDLIQTAKTIKQEGWEKQRNAQISIVSTNDFSFYDHVLDAICLIGAVPSRFKRGNGPISLDLLFTMARG 107
                  79*******************************************************************************99*************** PP

                  C.........TTCT--EEEESTTSS-EEEE-BE-SS.----S-THHHHHHHHHHHTTGGEEEEEE-HHHHHHT-EETTCC.-HCHHHHHHHHHHHHHH CS
  Meth_synt_1 100 k.........kdvaalemtkwFntnYHYlvPelekdtefklaseklleevkeakalgieakpvllGpltflkLskakeekveklellekLlpvYkell 188
                            +  +++emtkwF+tnYHY+vPe+ekd++f+l s+k++ee+keak lg+  kp+llGp+++l L+k+k+ +++++el+ek+lp+Y+e+l
   CCG91376.1 108 MekaslaeanTMPHPMEMTKWFDTNYHYIVPEFEKDQHFSLGSSKPFEEFKEAKYLGYLSKPILLGPISLLFLGKKKDPSIKNAELFEKILPIYEEIL 205
                  988888776445589*********************************************************************************** PP

                  HHHHHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHTCCTTTSEEEEE--SS-.CCHHHHHTTSSTSEEEEETSSHCHHHHHHHHCTT.TTSEEEEE CS
  Meth_synt_1 189 eeLkeagvewvqidEPalvldlekeelealkeaYeelakekkelklllatyFdsvaealellaelpveglglDlvraeenlealkkaglpedkvLsaG 286
                  +e+ + g++w+++dEP+l+ld+++e+++a+ ++Y +l+++   lk+llatyF+ ++e+ e+++++p++gl+ D +r+ ++l  l + ++ ++kv s+G
   CCG91376.1 206 KEFYSLGADWIEFDEPILTLDIPTEWQKAFYDVYPRLKQKVPALKILLATYFGPLKENREIVVSIPIDGLHYDWTRGGQELYGLLQ-NWDKNKVFSLG 302
                  ************************************************************************************99.9********** PP

                  EE-SSS-B---HHHHHHHHHHH CS
  Meth_synt_1 287 vidGrniWradlekalelleel 308
                  ++dGrniW++d++k+l+++++ 
   CCG91376.1 303 IVDGRNIWKNDFSKSLKVIHSA 324
                  *****************99876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.041
                  THHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES---SS-H CS
  Meth_synt_1  14 RelkkalesywkgkiseeeLektakeLrakhwkkqkeagidlipvndfslYDh 66 
                   e++++  ++  g+is+e+ e+  +e  ++ ++ q+e g+d+   ++f   D 
   CCG91376.1 457 TEIRRIRSRFRLGSISQEAYETFIEEEIKRVVELQEEIGLDVLVHGEFERTDM 509
                  577888889999********************************999977665 PP

  == domain 3  score: 28.6 bits;  conditional E-value: 1.1e-10
                  GGEEEEEE-HHHHHHT-EETTCC.-HCHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSG...CHHHHHHHHHHHHHHT....CCTTTSEEEEE- CS
  Meth_synt_1 148 ieakpvllGpltflkLskakeekveklellekLlpvYkelleeLkeagvewvqidEPalvldl...ekeelealkeaYeela....kekkelklllat 238
                    +k +l Gp+t l+ s a++++  ++ + +++  + +e ++eL+++g+ ++qidEPal   l   + ++ + l+ a e+++      ++++++  ++
   CCG91376.1 565 KPMKGMLTGPITILQWSFARDDQ-PRKITAKQIALAIREEVKELEKNGIGVIQIDEPALREALplrKIDWEDYLQWAIESFRiascCVEDSTQIHTHM 661
                  457889***************99.7777899999999999*******************888744445666777777777764444567889999999 PP

                  -SS-.CCHHHHHTTSSTSEEEEETSS.HCHHHHHHHHCTT.TT CS
  Meth_synt_1 239 yFdsvaealellaelpveglglDlvr.aeenlealkkaglped 280
                   + ++ + le++a+l+ + ++l+  r + e +++++k+++p+d
   CCG91376.1 662 CYSEFGDILEAIAKLDADVISLEASRsGFELINSFAKFRYPND 704
                  ***********************99966677778887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.40
# Mc/sec: 5929.65
//
Query:       CCG91377.1  [L=274]
Description: Dimethyladenosine transferase (RRNA methylation) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-41  140.7   0.0    5.6e-41  140.4   0.0    1.0  1  RrnaAD           Ribosomal RNA adenine dimethylase
    2.8e-05   24.7   0.0    5.3e-05   23.8   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.022   15.4   0.0      0.044   14.4   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
      0.061   14.1   0.0       0.11   13.3   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
      0.069   13.4   0.0       0.11   12.8   0.0    1.2  1  Chorion_S16      Chorion protein S16


Domain annotation for each model (and alignments):
>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.4   0.0   1.6e-44   5.6e-41       6     253 ..      22     265 ..      19     273 .. 0.91

  Alignments for each domain:
  == domain 1  score: 140.4 bits;  conditional E-value: 1.6e-44
                 XGCG--EE--HHHHHHHHHHH-GG..TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHHHHCTTTCCCC CS
      RrnaAD   6 ksygqnflknkkvineIldklnle..ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflkfetpeevtekdsihq 102
                 k+++qnfl+++++++ I++++       l+v+eigpG G+lTe +++   ++ ++E+d+ ++k+lq+++ +++k ++++ ++l+f +p         ++
  CCG91377.1  22 KQLSQNFLIDQNMAKLIVRESLHGmpLPLEVYEIGPGLGALTEFFLNENISLKAIEIDRGFCKVLQERFGSNPKFELIQGNALDFPFPH-------VKK 113
                 6899**************99855576789***********************************************************9.......578 PP

                 EEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS-S..- CS
      RrnaAD 103 eflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakveksifsPppkvdsalvelerkdedl..p 199
                   + v+nlPy+i + l ++l  ++   + +m++ lq e+a rlla+p  k+ ++lsvl + ++ +k + +++k++f P p+v sa+v  e+k + +   
  CCG91377.1 114 DTILVGNLPYNIASLLLVKLSLLPEL-FPRMVFTLQHEVALRLLASPKTKQFGALSVLIQSLFHIKRLRTLPKELFYPLPNVFSAVVLFEPKGTAAslT 211
                 8999********99999999877777.79***************************************************************9987668 PP

                 -S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT.T--TTTCCCCSGH CS
      RrnaAD 200 qkdlkkyesvvrkllnrkrktlstslksllpggelqalsstgindnalvkklsa 253
                   d   + ++vrk + ++rk+ls++l   l++++ + + ++ i+   + k+ s+
  CCG91377.1 212 ATDRTSFYAFVRKGFSQRRKKLSKVLGIPLEKRAEEIPPEHWIKLWREFKDSSI 265
                 89999*********************9888888888877777766666665555 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.5e-08   5.3e-05       1      74 [.      52     121 ..      52     131 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.5e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTG CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgal 74 
                      v ++G G G lt+ ++++    ++ +++i+ ++++  +er+  +++++e++qg+a d+pf++ + D +++ g+l
       CCG91377.1  52 VYEIGPGLGALTEFFLNEN--ISLKAIEIDRGFCKVLQERFG-SNPKFELIQGNALDFPFPHVKKDTILV-GNL 121
                      679*************994..********************6.569********************9998.555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.2e-05     0.044       2      67 ..      54     118 ..      53     125 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
                      EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvs 67 
                      ++G G G+l+e + +   ++ +++++  + k+ +e+   ++ k+e+++++a ++pf+  + D +++
       CCG91377.1  54 EIGPGLGALTEFFLNENISLKAIEIDRGFCKVLQERFGSNP-KFELIQGNALDFPFPHVKKDTILV 118
                      79************9999*******************9999.599************998888875 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     3e-05      0.11       2      73 ..      54     119 ..      53     128 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3e-05
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvas 73 
                      eiG G G+l++ +l++  +i++ +++i++ +++  +e++ ++      ++el + ++ld + +  + D++++ 
       CCG91377.1  54 EIGPGLGALTEFFLNE--NISLKAIEIDRGFCKVLQERFGSNP-----KFELIQGNALDFPFPhVKKDTILVG 119
                      9***************..**************55555555555.....6666666665544444666666655 PP

>> Chorion_S16  Chorion protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     3e-05      0.11      19      75 ..     198     254 ..     194     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3e-05
  Chorion_S16  19 aaltnaagaaasaakldgadwyalnrygweqgrpllakpyg.pldklyaaalpprsfv 75 
                    l +  g+aas +  d + +ya+ r g+ q r  l+k  g pl+k  a  +pp  ++
   CCG91377.1 198 VVLFEPKGTAASLTATDRTSFYAFVRKGFSQRRKKLSKVLGiPLEK-RAEEIPPEHWI 254
                  56777889********************************956655.68888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.45
# Mc/sec: 1814.46
//
Query:       CCG91378.1  [L=51]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.036   13.8   0.0      0.036   13.8   0.0    1.0  1  Synaptobrevin  Synaptobrevin
      0.057   13.8   0.0      0.057   13.8   0.0    1.1  1  DUF5383        Family of unknown function (DUF5383)


Domain annotation for each model (and alignments):
>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.1e-06     0.036      51      87 ..       9      45 ..       1      47 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.1e-06
                   HHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin 51 kkqarklkrkmwwknmkliiililvvlililiiiivi 87
                   +k  +k kr +  +n+ + +i++l+ l+++++i++vi
     CCG91378.1  9 QKDPQKKKRSVAAENVYFFVIMFLIGLLFVFLIFSVI 45
                   666788899*************************987 PP

>> DUF5383  Family of unknown function (DUF5383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.4e-06     0.057      86     118 ..       9      41 ..       1      47 [. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.4e-06
     DUF5383  86 ateqeseeksnlLpillillivllivvllivli 118
                  ++ +++++s+    +++ +i++li +l+++li
  CCG91378.1   9 QKDPQKKKRSVAAENVYFFVIMFLIGLLFVFLI 41 
                 344444588999999*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 351.56
//
Query:       CCG91379.1  [L=493]
Description: Exopolyphosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-74  248.6   0.1      1e-73  248.3   0.1    1.1  1  Ppx-GppA  Ppx/GppA phosphatase family
  ------ inclusion threshold ------
       0.12   12.8   0.1        2.3    8.7   0.0    2.6  2  FtsA      Cell division protein FtsA


Domain annotation for each model (and alignments):
>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.3   0.1   1.2e-77     1e-73       2     283 ..      18     299 ..      17     301 .. 0.98

  Alignments for each domain:
  == domain 1  score: 248.3 bits;  conditional E-value: 1.2e-77
                 EEEECTTEEEEEEEEEEE--CCCCCHCCSSC-HHHHHHHHHHHHHHHHHCCCTTGCCEEEEEEHHHHHSTTHHHHHHHHCCCCSS-EEEE-HHHHHHHH CS
    Ppx-GppA   2 iarkaagllqivarekrkvrLaeglnesgrlqeeaiertisaLkefaellqkfkvenvrvVATsalRdavNadeFlarvkkevglkveiisgeeEarli 100
                 ++++++  + ++ + ++ v La+gl+e+  l++eai+r+i++L++f e+++ +++ +vr+V+T++lR a+N++ Fl+ ++ ++g ++eiisg eEarli
  CCG91379.1  18 VVQVENETIRPIDKIRDPVALAAGLDENRFLTPEAITRAINSLNKFGERIKAIPSHRVRAVGTNTLRIAKNSEQFLKLAEAALGHQIEIISGHEEARLI 116
                 88999999******************************************************************************************* PP

                 HHHHHHHT.---SSEEEEEEETTEEEEEEEETTEEEEEEEES--CCHHHHHHSGCCC--HHHHHHHHHHHHHHCTTTHHHHCCCEHHCCCCCCCHCCHH CS
    Ppx-GppA 101 ylgvvssl.lekgrglviDiGGGStElvlgeekevsklvSlplGavrlterfltddpltkeeveaarkavekeleevkdevkkegewtrlvgtsgtisa 198
                 ylgv++s+    ++ lv+DiGGGStEl+lge++ ++ ++Sl +G+v++ ++f++d+++++ ++  a+ ++ +ele+++  +kk g w+r++g+sgti a
  CCG91379.1 117 YLGVAHSMeDDGQKRLVVDIGGGSTELILGESFIPQRVESLYIGCVSFSKTFFPDGIVSASRLRNAEISALQELEPIVGSFKKYG-WQRVIGSSGTILA 214
                 ********8888999**********************************************************************.************* PP

                 CHHHHHHCT.SSCEEEHHHHHHHHHHHCTSSCHHHHHSTTS-CCHHCTHHHHHHHHHHHHHHCT-SEEEEES--HHHHHHHHHHH CS
    Ppx-GppA 199 laeltelhgekgyeitaeeleeliekllqlkkeeelklagvsdeRadvivagalilsavlealeieaviisegalrEGvlyslll 283
                 +++   + g  ++ ita  l++l + ll + + ++l+++g+  +R++v+ +g +ilsa++e l i+ +++s galrEGv+y+ll 
  CCG91379.1 215 IQQGVIAEGWSNSGITASSLKKLRKHLLSIGQIDKLSIKGIDFDRKQVLAGGFAILSAIFESLDIKTMEVSSGALREGVIYDLLG 299
                 *********99***********************************************************************986 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.044   3.9e+02       1      19 [.       5      23 ..       5     113 .. 0.69
   2 ?    8.7   0.0   0.00025       2.3       2      37 ..     133     176 ..     132     329 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.044
                EEEEE-SSSEEEEEEETTE CS
                xxxxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedga 19
                a vDiG+ +  ++v++ ++
  CCG91379.1  5 ASVDIGSHSFHLLVVQVEN 23
                5799999999999998853 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00025
                 EEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHH........H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........x RF
        FtsA   2 lvDiGagktdvavaedgalvhlrvigvggngitkd........i 37 
                 +vDiG+g+t+++++e   ++ ++++ +g   ++k         +
  CCG91379.1 133 VVDIGGGSTELILGESFIPQRVESLYIGCVSFSKTffpdgivsA 176
                 8**************98888888888887777776666664443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3294.74
//
Query:       CCG91380.1  [L=503]
Description: Glucose-6-phosphate 1-dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-120  402.4   0.0   1.5e-120  401.8   0.0    1.2  1  G6PD_C    Glucose-6-phosphate dehydrogenase, C-terminal domai
    4.3e-55  187.1   0.0      1e-54  185.8   0.0    1.6  2  G6PD_N    Glucose-6-phosphate dehydrogenase, NAD binding doma


Domain annotation for each model (and alignments):
>> G6PD_C  Glucose-6-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  401.8   0.0  1.6e-124  1.5e-120       1     289 [.     200     498 ..     200     499 .. 0.98

  Alignments for each domain:
  == domain 1  score: 401.8 bits;  conditional E-value: 1.6e-124
                 HHHHHS-STTSTTSSTTTEEEEEEEEEESS--TTTHHHHTTTHHHHHTTTTHHHHHHHHHH----SSSSHHHHHHHHHHHHTTB----G...GG.EEEE CS
      G6PD_C   1 lvlRfaNalfeplwnrnyidhvqitvketlgvegrggYydeaGalrDvvqnHllqllalvamepPasldaedirdekvkvLkslrplkleevekkvvrG 99 
                 l+lRf+Na++ep+w+++yidhvqitv+e++gve+rg+Yy++aGalrD+vqnH+lqll+l+amepP+s+d+++ir++kv+vL+++r+++ +ev++ +vrG
  CCG91380.1 200 LALRFSNAWWEPIWDSRYIDHVQITVAEEVGVEQRGEYYEHAGALRDMVQNHMLQLLCLIAMEPPVSFDSDEIRNKKVDVLHAVRKISVDEVHQVAVRG 298
                 68************************************************************************************************* PP

                 EE.....E--TGS-STTSTTS-TT----SEEEEEEEB-STTTTT-EEEEEEESSBSS-EEEEEEEE---SS-SS..---......--EEEEEEESS-EE CS
      G6PD_C 100 qYaagavkgkevkgYreeegvakdSkteTfvalkleidnerwagVPfylrtGKrLnekkteiriqfkkvpsdlf..kkke.....rneLviriqpdeai 191
                 qY +g+++gkev +Yree+gv++dS+teTf+a+kl++dn+rw++VPfylrtGKrL++++t+i++++k++p++ f  +  +     +n+++++iqp+e+i
  CCG91380.1 299 QYGRGWIRGKEVVAYREEPGVKPDSSTETFAAIKLFVDNWRWQNVPFYLRTGKRLAKRVTQIVVTLKPIPHQAFppR--AldqwlPNRMILNIQPEESI 395
                 **************************************************************************542..356899************** PP

                 EEEEEEE-SSSE.....EEEEEEHHHHTT..---HHHHHHHHHHHT-GTTSB-HHHHHHHHHHHHHHHHHHHH...---EEEETTSSS-HHHHHHHHHH CS
      G6PD_C 192 slklnakkpgleleleeveldlsykerfk..lpeaYerLlldvlkgdqtlFvrsdeveaaWkivdpileawee...eklekYeagsrgPeeadellekd 285
                 sl ++ak pg  ++l++v+l+++y+e+fk  +peaYe+Ll dv+ gd tlF+r+d+ +aaW+ivdpile w++    ++++Y+ags+gPe+a+ l++kd
  CCG91380.1 396 SLVFHAKIPGPVIRLSPVNLQFKYQEAFKkgSPEAYETLLRDVIIGDGTLFMRADQAQAAWSIVDPILEFWQStppIDFPNYPAGSWGPEAAQVLIAKD 494
                 ***********************************************************************99*99779******************** PP

                 TX.X CS
      G6PD_C 286 grkw 289
                 g++w
  CCG91380.1 495 GKSW 498
                 ***9 PP

>> G6PD_N  Glucose-6-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.8   0.0   1.1e-58     1e-54       1     177 []      17     198 ..      17     198 .. 0.94
   2 ?   -2.7   0.0       0.9   8.1e+03      86     118 ..     326     359 ..     317     367 .. 0.74

  Alignments for each domain:
  == domain 1  score: 185.8 bits;  conditional E-value: 1.1e-58
      G6PD_N   1 vifGasGdLakrkllPaLyelaregllpeevrivgvarsklsdeefrekvkealkkekekeeldeekleeflkrle.yvsgdleeeeeyekLkekleel 98 
                 vifG+ GdL+ rkl+PaL++l+++g lpe+++iv++ ++++s ee+re++++ +++ +   ++d++ ++ f +++e y+  dl+ee+ ye+Lk++l++ 
  CCG91380.1  17 VIFGGAGDLSWRKLFPALFSLYCSGWLPENFAIVAADKKSMSLEEYREHIRKGIETFA--PQYDSSLWSCFSEKIEsYLVADLSEEAFYESLKHTLQQI 113
                 8*****************************************************6555..457999*******99636677****************98 PP

      G6PD_N  99 e...a...nrlfYlavppslfeevaeklkkaglakeeewkrvvvEKPfGkdlesarelneelkkvfkeeqiyrIDhYLGketvqN 177
                     +   n +fYla++p+l ++v+++++ a+l ++ + +r+vvEKP+G+dlesa+el++ l+kvfke+qi+rIDhYLGketvqN
  CCG91380.1 114 AtkwDsapNWIFYLAISPTLIKTVVTHIGIAQLCEAPRESRIVVEKPYGHDLESANELDQCLGKVFKESQIFRIDHYLGKETVQN 198
                 86551566****************************999*********************************************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.9
      G6PD_N  86 eeyekLkekleele.anrlfYlavppslfeevae 118
                 e+++++k  +++++ +n+ fYl +  +l + v++
  CCG91380.1 326 ETFAAIKLFVDNWRwQNVPFYLRTGKRLAKRVTQ 359
                 4677777777776667888999999988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 3020.42
//
Query:       CCG91381.1  [L=127]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 808.74
//
Query:       CCG91382.1  [L=99]
Description: hypothetical protein MFUM_1020108 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 744.88
//
Query:       CCG91383.1  [L=61]
Description: hypothetical protein MFUM_1020109 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 473.71
//
Query:       CCG91384.1  [L=630]
Description: Heme/copper-type cytochrome oxidase, subunit 1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-128  429.8  66.4   1.4e-128  429.4  66.4    1.1  1  COX1      Cytochrome C and Quinol oxidase polypeptide I


Domain annotation for each model (and alignments):
>> COX1  Cytochrome C and Quinol oxidase polypeptide I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.4  66.4    8e-133  1.4e-128       2     430 ..      53     540 ..      52     542 .. 0.95

  Alignments for each domain:
  == domain 1  score: 429.4 bits;  conditional E-value: 8e-133
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCTCT.........................-HHCHHHHHHHHHHHHHHHHHHHH.CHHHHHHHHHHHHCTSS-S CS
        COX1   2 igllylilalvlllvggllgllirlqlafp.........................dletynqlrtlHgnlmiflfatpf.ilgfgnylvplllgardla 74 
                 ig++y+i++l+  l+g+ l +++r+ql +p                         +++ yn++  +Hg++mif+ ++p+ ++gfgn++vpl+lga+d+a
  CCG91384.1  53 IGIQYMITSLLIALFGFGLMIVMRWQLSYPgkpipllggvlenilghdmfpngvmTPQAYNAFGAIHGTVMIFMALVPAlFAGFGNFVVPLQLGAPDMA 151
                 89*************************876666666666666666666666777777****************************************** PP

                 -HHHHHHHHHHHHHHHHHHHHHHH...CSS-STTTTTTTC...............SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCGS-HHH CS
        COX1  75 fprlnalsfwlvvlgvvllllsll...gaattgwteYapls..............evdlwllglllvvvssllgainfivtilkrrapgmtvaklplfv 156
                 fprln++sfw++++g+v++++s++   gaa+ gwt Y+pl+              +++lwllg+++ +++sllg+in+i+ti++ r pg+++++lp+fv
  CCG91384.1 152 FPRLNMASFWCFFVGAVIIMVSFFvpgGAAKSGWTSYPPLAdladsgpnfhpifnGQTLWLLGMAFNITGSLLGVINMITTIFQLRVPGLSWMRLPFFV 250
                 **************************989********************************************************************** PP

                 HHHHHHHHHHHHHCHHHHHHHHHCHHHHHCT.-SSSC...............E-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHH CS
        COX1 157 wavlatailillalpvlalalllllldrslg.kffsp...............gdplldqhlfWffgHpeVyililpalgivyyilpkfagrplfsykls 239
                 wa l+ta+l+lla+p l +a +++l+dr  g +ffsp               g+pll+qhlfWf+gHpeVy+ ilp++giv +i+++ +++pl+sy+++
  CCG91384.1 251 WAELVTAFLMLLAFPPLEAAAIMQLMDRLAGtSFFSPdglivngqhahysggGAPLLWQHLFWFLGHPEVYVQILPTMGIVGEIIANNTRKPLWSYRIL 349
                 ***********************************999************************************************************* PP

                 HHHHHHHHHHCCCCGGGGTTTSSS-HHHHHHHHHHHHHTHHHHHHCCCHHHHCCTTS-CHCHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTBHH CS
        COX1 240 vlafililflsflvwaHHlfttglpewlkalgsvfslliavPsglkvfnwlatlwrgsirfktpmlfflgfavlfiigGltGvllalpsvnyvvhntyw 338
                 v+++++i+f++++vwaHH+++tg+ + + +++++f+++i +Ps+l    +l+ lw+ sirf+ pm+f+l+ + lf+igGltG+ l++ + ++v+h+ty+
  CCG91384.1 350 VYSVLTIGFVGMIVWAHHMYMTGMGQAISTFFQLFTTIISIPSVLIGTVFLMSLWGASIRFNLPMMFALAWLPLFGIGGLTGLPLGWSTSDMVLHDTYY 448
                 *********************************************999*************************************************** PP

                 HHHHHHHHHTTHHHHHHHHHHHHHHHHHHSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHBSSSST--SCCCCHHHCHHHHHHHHHHH CS
        COX1 339 vvaHfHlvllgavvfllfaaiyyllpkltgrmlserlaklhfwllfiGlvlmflpmhilGllgmprraadyksfletvpelqplnvlrtigg 430
                 vv+HfH+++  + +++lfa+iyy++pk tgr ++e l+klhfw +fi ++ +f+pm++ G++g+ rr++d ++  e  + l +ln ++++ +
  CCG91384.1 449 VVGHFHYMMAPTSIMALFAGIYYWYPKATGREMNEFLGKLHFWPTFITFNGVFIPMLVQGFAGIHRRWYDGGQGWEMAQGLLWLNHVMSVSA 540
                 *********************************************************************86555555666777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4667.82
//
Query:       CCG91385.1  [L=457]
Description: Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-15   56.0   0.1    2.5e-11   43.9   0.0    2.2  2  Lactamase_B    Metallo-beta-lactamase superfamily
    5.5e-13   49.2   0.0    1.9e-12   47.4   0.0    1.9  2  Beta-Casp      Beta-Casp domain
    1.2e-11   44.3   0.0    2.9e-11   43.1   0.0    1.7  1  RMMBL          Zn-dependent metallo-hydrolase RNA specificity
    2.2e-09   37.1   0.0    4.5e-09   36.1   0.0    1.6  1  Lactamase_B_2  Beta-lactamase superfamily domain
    7.9e-07   28.7   0.0    1.2e-06   28.1   0.0    1.3  1  Lactamase_B_6  Metallo-beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.022   14.6   0.0      0.079   12.8   0.0    2.0  1  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   8.4e-15   2.5e-11       5      70 ..      13      79 ..      10     120 .. 0.92
   2 !   10.0   0.0   0.00022      0.66     128     167 ..     160     197 ..     149     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 8.4e-15
                 SSEEEEEE.ETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCC CS
  Lactamase_B  5 pvnsylie.gdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdv 70
                 ++nsy+++ g +g i+ D+G+++  + ++  +  + l++ +vd ++++H+H+DH+G l+ + ++++ 
   CCG91385.1 13 GANSYFLDfGQDGRIILDAGLHPKIEGELATPNFQSLEDYPVDCLLISHAHHDHTGSLPLFLRKYPK 79
                 68***********************************************************999875 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00022
                  TTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCE CS
  Lactamase_B 128 gpghghghgvveygggkvlftGDallagetgridltlrga 167
                  g+  g+++++++ +g+++ +tGD+++ + t++++   +++
   CCG91385.1 160 GHILGAVGIRIFHRGRRIFYTGDVSFKEQTLMLPA--DFP 197
                  778899**********************9999988..333 PP

>> Beta-Casp  Beta-Casp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.1   9.3e+03      13      38 ..     105     130 ..      99     145 .. 0.67
   2 !   47.4   0.0   6.3e-16   1.9e-12       1     110 []     252     370 ..     252     370 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.1
                 TT...TTS-S-EEEEE-HHHHHHHHHG CS
   Beta-Casp  13 kekk.ledlklpiyldsplaskatevY 38 
                 k+++ l+++++p+y   ++  ++te +
  CCG91385.1 105 KQRAeLQIPEYPLYTHKEI-DRCTERW 130
                 4444466778999988744.5666655 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 6.3e-16
                 HHHHHHHH..HCTT..TTS-S-EEEEE-HHHHHHHHHGGGGGG..................E-SHH....HHHH...HHHS-SSEEEEES-TTSSSSHH CS
   Beta-Casp   1 aqellylLeelwkekkledlklpiyldsplaskatevYkeyae..................veakslewmeskke.elnsskgpkvilassgmlegGrs 80 
                 +qe+l  L   +++++l   k+pi++ + l++++ e+Y+++a+                  v        + kk+ ++ ++++ +++l++sgm+++ ++
  CCG91385.1 252 TQEILTTLFLEQQAGRL--RKCPIFIGG-LSRSFSEIYDKLASrslrrypgfkildtiapiVI-------NGKKTmKI-QPSKGEIYLVTSGMMNENTI 339
                 68888888555555454..345**9999.************9899999999888775544422.......22222223.56799*************** PP

                 HHHHHH.HTTSTTSEEEESS---TTSHHHHH CS
   Beta-Casp  81 rellkk.lledprntvilvgyqaegTlgrkl 110
                 +++l++ +l+++++++++vgy+++++++++l
  CCG91385.1 340 SNVLAQkFLPNEKHSIFFVGYCDPDSPAGQL 370
                 ****998*********************986 PP

>> RMMBL  Zn-dependent metallo-hydrolase RNA specificity domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   9.8e-15   2.9e-11       3      61 ..     389     448 ..     387     449 .. 0.90

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 9.8e-15
       RMMBL   3 pvkarieeidfSgHadknellelirklkprnvilvHGeeeatsalarllkeee.gidvfi 61 
                 pv ++++++d+  Ha ++++l +i+ l+pr  ilvHG++ a++ ++++l+ee+  i  +i
  CCG91385.1 389 PVICEVDHFDLTSHALREDILSYIQFLEPRTCILVHGDPAALEWFKQKLEEESpQIQLII 448
                 89***********************************************77664466665 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.5e-12   4.5e-09       2     172 ..      26     215 ..      25     246 .. 0.69

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.5e-12
                    EEEES--TT..HHHH.HTCGGS--S.SS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHH............HCCTTCGHHHCHT CS
  Lactamase_B_2   2 riLiDagpd..lrqq.alralqPve.lrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvla............vleanfvylalee 81 
                    ri++Dag+   + +  a++     + l d   p+d +l++haH DH+  l+ + + +p kl+++ ++ ++              l++         
     CCG91385.1  26 RIILDAGLHpkIEGElATPNF---QsLEDY--PVDCLLISHAHHDHTGSLPLFLRKYP-KLKVFLSEPTYYltppllhnsvevMLKQ--------- 106
                    899999999764444334443...424555..***************99999888666.5888877777665665555555553333......... PP

                    T..................TTEEEEEE-TTSEEEE.......CSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEECTTEEEEEESS-S---HHHH. CS
  Lactamase_B_2  82 e..................pavnvheldwgesfel.......gdggleitatparhksgrrldrnagdtlGlriegggkrvyyigDtgyipeeig. 151
                                       ++++++  +++++ ++       + + l++++ p  h  g          +G ri   g+r++y+gD+ + ++ +  
     CCG91385.1 107 RaelqipeyplythkeidrCTERWQACHINKEWSFngypnpkH-EPLTFQFYPSGHILGA---------VGIRIFHRGRRIFYTGDVSFKEQTLMl 192
                    2333333444666666669999999999999999999999954.5688999887777777.........*******************66644223 PP

                    ...HHHCT-SEEEEE-S-SSTTHH CS
  Lactamase_B_2 152 ...erlggadllllditayeddem 172
                          +g+d+l+++ t+  + em
     CCG91385.1 193 padFPQNGIDVLIIESTRGAQ-EM 215
                    322445569999999885444.44 PP

>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0     4e-10   1.2e-06       6     169 ..      24     190 ..      18     210 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 4e-10
  Lactamase_B_6   6 nvkiLlDvGwdeskvslesalkelekvi.ptvdliLLshatlehlGayallyakfksklllnipvyatlpvvkLGrvsl...ldlyaskgllgped 97 
                    + +i+lD G + + ++ e a+ + ++     vd  L+sha  +h G+++l++ k++     +++v+ + p++ L   +l   ++ + +++++ ++ 
     CCG91385.1  24 DGRIILDAGLHPK-IEGELATPNFQSLEdYPVDCLLISHAHHDHTGSLPLFLRKYP-----KLKVFLSEPTYYLTPPLLhnsVEVMLKQRAELQIP 113
                    5689999999986.655544444444322369****************99887765.....67889999999888877722245556666666665 PP

  Lactamase_B_6  98 see.leledideafdkiktlkYsQklelks....kldgltitaynaGhtlGGtiWkiskesekivYavdwnhakesh 169
                    +    + ++id++ +++++   + + ++++    k + lt+  y +Gh lG+   +i ++  +i Y  d++ +  ++
     CCG91385.1 114 EYPlYTHKEIDRCTERWQACHINKEWSFNGypnpKHEPLTFQFYPSGHILGAVGIRIFHRGRRIFYTGDVSFKEQTL 190
                    5542588*******************99997777779*****************************99887665555 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.7e-05     0.079       6      52 ..      13      69 ..      11     217 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.7e-05
  Lactamase_B_3  6 ghnsflleta.garilvDPf........kanlgyeppa........eeaDlvlisqaledHahl 52
                   g ns+ l+ + + ri++D +              +  +          +D++lis+a+ dH   
     CCG91385.1 13 GANSYFLDFGqDGRIILDAGlhpkiegeL-----A--TpnfqsledYPVDCLLISHAHHDHTGS 69
                   88999999954899999998554443331.....2..13356666689**********888644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3351.78
//
Query:       CCG91386.1  [L=57]
Description: hypothetical protein MFUM_1020112 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       172  (0.0095934); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 452.90
//
Query:       CCG91387.1  [L=230]
Description: hypothetical protein MFUM_1020113 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1859.92
//
Query:       CCG91388.1  [L=702]
Description: Polysulphide reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-52  177.2   0.1    2.2e-52  177.2   0.1    3.0  3  DUF3341   Protein of unknown function (DUF3341)
    9.1e-14   51.8  25.6    9.1e-14   51.8  25.6    2.0  2  NrfD      Polysulphide reductase, NrfD


Domain annotation for each model (and alignments):
>> DUF3341  Protein of unknown function (DUF3341)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.11     1e+03      91     117 ..     272     298 ..     260     312 .. 0.84
   2 ?    0.7   0.4     0.041   3.7e+02      88     116 ..     419     447 ..     413     474 .. 0.82
   3 !  177.2   0.1   2.4e-56   2.2e-52       2     169 ..     516     698 ..     515     699 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.11
                 HHHHHHTHHHHHHHHHHHHHTTTTTT- CS
     DUF3341  91 afipitFEltvLfaalatvlgllllng 117
                 + +p  F ++ +f+ +a++l ll+ ++
  CCG91388.1 272 TIFPPYFGVGAIFGGFAMILVLLIPSR 298
                 578999999999999999999998776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.041
                 -HHHHHHHHTHHHHHHHHHHHHHTTTTTT CS
     DUF3341  88 slpafipitFEltvLfaalatvlglllln 116
                 s+  f+p++ ++   +++++ +l+l+ll 
  CCG91388.1 419 SWRIFVPTAIDVLLYVGSIGLFLTLFLLF 447
                 8999******************9999764 PP

  == domain 3  score: 177.2 bits;  conditional E-value: 2.4e-56
                 -B------SSHHHHHHHHHHHSS----EEB-SS--TT-TTTSS--SS-STHHHHHHHHHHHHHHHHHHHIII................IISS---STT- CS
     DUF3341   2 gllaeFddedallkAakklreagykkldvysPfpvhgldealglkksrlpliallgGllGlalalllqvyts................vvdyplnigGk 84 
                 +l aeF++++ l+kAakkl+  g++++++ysP+p+h+l+ea  ++ks++++i+l+gG++G++lalll+  +s                 ++ypl+++Gk
  CCG91388.1 516 ALGAEFSTPELLCKAAKKLKLLGFSHFELYSPYPFHELSEAGPIQKSWVSRIVLMGGTVGFLLALLLVSTISlpkpdflkhllsssllNLFYPLVVQGK 614
                 689*****************************************************************77777777777777777777779******** PP

                 -SS-HHHHHHHHTHHHHHHHHHHHHHTTTTTT-S-----TTTT-TTGGG.TTTS---EE--S-SS---HHHHHHTTSS--S---B CS
     DUF3341  85 PlfslpafipitFEltvLfaalatvlgllllnglprlyhpvfkaenfdrratdDkffllieatdpkfdeeelkalLkelgAeeve 169
                 P+fslp+f+pi+FElt Lfa++++++g+l++ +l+++yhp+f+++++++r +d+ ffl+i++tdp   +++l+++L +lgA  v+
  CCG91388.1 615 PYFSLPTFVPIFFELTALFASFGAFFGILFCGRLFKFYHPLFSWKRYNERGMDNGFFLVIKKTDPL-FSSNLSTILFRLGAIGVD 698
                 ****************************************************************96.8899**********9997 PP

>> NrfD  Polysulphide reductase, NrfD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.7         1   9.4e+03      13      58 ..      57      67 ..      32      81 .. 0.41
   2 !   51.8  25.6     1e-17   9.1e-14       4     308 ..      85     410 ..      82     413 .. 0.72

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1
        NrfD 13 lliavylFligisAgalilaillklfkkkegkslkliirtgallaa 58
                + i                                     +a la 
  CCG91388.1 57 WAIS-----------------------------------ICASLAI 67
                2222...................................2222111 PP

  == domain 2  score: 51.8 bits;  conditional E-value: 1e-17
        NrfD   4 ehsnsvvWglliavylFligis.Agalilaillklfkkkegkslkliirtgallaalavlagllilvldlgrperflkll.l......yynfsSimswg 94 
                 +++ +vvW ++i+ ++F igi+ Ag li+aill l  +k  +s+++ +   a+   +av  g ++ ++++gr +  ++l+ +        n +  + w+
  CCG91388.1  85 GNQSPVVWAWPIVDFVFWIGIGhAGTLISAILL-LSRQKWRNSVNRAAEASAI---FAVASGAIFPAIHIGRQWMGWYLFpVpwsagiWQNLRAALMWD 179
                 56789****************867789999888.3333344677777666666...566667788899******88888744332222334469999** PP

        NrfD  95 vlllslyivvlvlyllvifekdlaakglpalg.ilaklisla...........ervakilaiialilavllgsytgfllsavlsrpl..wnspllpvlF 179
                 v++  +y+ v++ly ++ + +d+a++   +++ +++kl+++            + +  ++  +a il+ l+ s+  f++   +s +l  w++ ++p+ F
  CCG91388.1 180 VFAVLTYLTVSLLYWYLGMIPDFATLREKETKpFKKKLWAILslgwlgsasqwTHYELGYLCLAGILTPLVLSVHSFVSCDFASTILpgWHATIFPPYF 278
                 ************99888777899988844455699999999667888888877555556777777777777777777777666665555********** PP

        NrfD 180 lasaiasGlavlllasllaarfek...esedagllkklellvilt..eagllvilfvglaleggekiealeaa.lsggfltvlFwlgvvllglaiplll 272
                  + ai+ G a++l++ +      +   e +  + ++++++ +++t    g + ++ ++ a+     +e ++++  ++g++ + Fw  +++  +++p +l
  CCG91388.1 279 GVGAIFGGFAMILVLLIPSRALIPklkELILPEHINQMGKWLLATgsMVGYVYLIELFTAWYSANPYERYAFLnRIKGPYFWAFWS-MLFCNSVAPQFL 376
                 *********99887766544444401144445566666555444433334444444444444444444444432356699999988.889999999996 PP

        NrfD 273 slavprlrenvavvviasilalvgvlllrfllliag 308
                   +++++r n  ++++ + la+vg+ l+rf+++i +
  CCG91388.1 377 --WIKKIRFNPLSLFVIALLANVGMWLERFVIIIIS 410
                 ..*******************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4898.82
//
Query:       CCG91389.1  [L=296]
Description: 5'-3' exonuclease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-43  147.5   0.0    7.4e-43  146.2   0.0    1.6  2  5_3_exonuc_N     5'-3' exonuclease, N-terminal resolvase-like
    4.2e-27   94.6   0.0    1.1e-26   93.2   0.0    1.7  1  5_3_exonuc       5'-3' exonuclease, C-terminal SAM fold
    1.9e-05   25.2   0.1      0.018   15.7   0.0    2.2  2  HHH_5            Helix-hairpin-helix domain
     0.0009   18.7   0.8     0.0009   18.7   0.8    2.0  2  Fur_reg_FbpB     Fur-regulated basic protein B
  ------ inclusion threshold ------
       0.04   14.0   0.0      0.099   12.8   0.0    1.6  1  HHH_2            Helix-hairpin-helix motif
       0.08   12.9   0.1       0.35   10.8   0.1    2.2  2  HHH              Helix-hairpin-helix motif
        0.1   12.5   0.0       0.21   11.4   0.0    1.4  1  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
       0.11   12.5   0.1       0.25   11.3   0.1    1.6  1  NYN_YacP         YacP-like NYN domain
       0.19   11.6   0.0       0.38   10.7   0.0    1.4  1  Flg_hook         Flagellar hook-length control protein FliK


Domain annotation for each model (and alignments):
>> 5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.2   0.0   3.7e-46   7.4e-43       2     158 ..       3     165 ..       2     166 .. 0.93
   2 ?   -1.9   0.0       1.4   2.7e+03     126     142 ..     217     233 ..     216     244 .. 0.68

  Alignments for each domain:
  == domain 1  score: 146.2 bits;  conditional E-value: 3.7e-46
  5_3_exonuc_N   2 llLiDgsslifRayyal..lttsdgeptnavygflnmllklleeekpthlavvfDakkktfRhelypeYKanReetpeelkeqlplikevlealgik 96 
                   +lL+Dg  ++fR++ya+  l+t++geptna+yg++ ++ ++l++++p+  av+fD + ++ R +l ++YKanR+e+p++lk q+p +ke+l+alg++
    CCG91389.1   3 FLLVDGYYYAFRSFYAMppLSTKSGEPTNAIYGLTIVIRRMLADLQPDFGAVAFDGGLPADRIALRSDYKANRPEIPNALKVQIPWLKELLQALGLT 99 
                   79**************99*****************************88******988899************************************ PP

  5_3_exonuc_N  97 vlevegyEADDvigtlakraeeeg..vvivsgDkDllQlvednvrvld..vkkeelldeeevaeky 158
                    +eveg EADDvi+t++k+a e++  vv+ ++DkDll l+ ++vrv+   +kk +l++e++++ek+
    CCG91389.1 100 PIEVEGQEADDVIATYTKKAIEKSidVVLATNDKDLLSLIGPHVRVYTveKKKFKLITEKDIEEKW 165
                   *******************6654445**************99******644446689*****9996 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.4
  5_3_exonuc_N 126 gDkDllQlvednvrvld 142
                   +Dk ++Ql+e+n +++ 
    CCG91389.1 217 PDKRFAQLIEENKELIL 233
                   599999**987755444 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0   5.6e-30   1.1e-26       1      93 [.     167     258 ..     167     262 .. 0.95

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 5.6e-30
  5_3_exonuc   1 vkPeqiidlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenldelkekklkekLeenkeearlskkLatiktdvpleleledlklke 93 
                 v+P q++dl+aL+GDs+DnipGvpgiG+ktAak++++ygsl ++l++ d + +k+ ++ +eenke +  ++k+ ++k d+pl+l +e+l++k+
  CCG91389.1 167 VHPWQLPDLLALTGDSVDNIPGVPGIGKKTAAKWISRYGSLSALLSASD-IPDKRFAQLIEENKELILTNYKMLELKNDIPLPLPIEELRIKP 258
                 78********************************************655.88899**********************************9987 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.8e-06     0.018      32      53 ..     181     202 ..     171     206 .. 0.76
   2 !   14.9   0.0   1.5e-05      0.03       7      32 ..     189     213 ..     183     230 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.8e-06
                 S-HHHHHTSTTS-HHHHHHHHH CS
       HHH_5  32 adveeLakipGiGkktAeriil 53 
                  +v+ +  +pGiGkktA ++i 
  CCG91389.1 181 DSVDNIPGVPGIGKKTAAKWIS 202
                 367888889***********97 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.5e-05
                 STT--HHHHHHHHTTT--SHHHHHHS CS
       HHH_5   7 vsGiGpktAlallsaGiesvedlaaa 32 
                 v+GiG+ktA + +s  ++s+ +l++a
  CCG91389.1 189 VPGIGKKTAAKWISR-YGSLSALLSA 213
                 666666666666666.6666666665 PP

>> Fur_reg_FbpB  Fur-regulated basic protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.5       3.8   7.5e+03      32      36 ..     160     164 ..     158     165 .. 0.48
   2 !   18.7   0.8   4.5e-07    0.0009       6      27 ..     219     240 ..     216     241 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.8
  Fur_reg_FbpB  32 kldek 36 
                    ++ek
    CCG91389.1 160 DIEEK 164
                   45555 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 4.5e-07
  Fur_reg_FbpB   6 lsFeeLVeeNKkeLlnDpeame 27 
                   ++F++L+eeNK+ +l++ +++e
    CCG91389.1 219 KRFAQLIEENKELILTNYKMLE 240
                   79****************9998 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.9e-05     0.099       7      33 ..     188     214 ..     186     215 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.9e-05
       HHH_2   7 GIrhVGektAklLakrFksldaLkkas 33 
                 G++ +G+ktA +  +r++sl aL +as
  CCG91389.1 188 GVPGIGKKTAAKWISRYGSLSALLSAS 214
                 89*********************9997 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.2   1.2e+04       2      11 ..      56      65 ..      56      68 .. 0.74
   2 ?   10.8   0.1   0.00018      0.35      10      25 ..     183     198 ..     181     199 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.2
                HHHHHTSSHH CS
         HHH  2 leglipasre 11
                ++g  pa+r 
  CCG91389.1 56 FDGGLPADRI 65
                6788899875 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00018
                 HHHHHTSTT-SHHHHH CS
         HHH  10 reeLlalPGVGpktAe 25 
                 ++ +  +PG+G+ktA 
  CCG91389.1 183 VDNIPGVPGIGKKTAA 198
                 5555679********6 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.21       5      20 ..     188     203 ..     186     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
  DNA_pol_lambd_f   5 kvyGVGpktAkkwyak 20 
                      +v G+G ktA kw+++
       CCG91389.1 188 GVPGIGKKTAAKWISR 203
                      699***********98 PP

>> NYN_YacP  YacP-like NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00013      0.25      75     109 ..     104     138 ..     102     144 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                 TT--HHHHHHHHHHHC--TT--EEEE---CSSCTG CS
    NYN_YacP  75 egetADsvIeklvaelrkekeevvVvTSDraeqlv 109
                 eg++AD+vI  + +++ ++  +vv +T+D++  ++
  CCG91389.1 104 EGQEADDVIATYTKKAIEKSIDVVLATNDKDLLSL 138
                 789***************99*********987665 PP

>> Flg_hook  Flagellar hook-length control protein FliK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00019      0.38      41      77 ..      70     106 ..      61     112 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00019
                 EEEE-SCHHHHHHHHTHHHHHHHHHCCTTCCEEEEEE CS
    Flg_hook  41 qltaenpetrelLeqnlprLreaLaaaGlklddlsvs 77 
                    a++pe  ++L+ ++p L+e L+a Gl+  +++ +
  CCG91389.1  70 DYKANRPEIPNALKVQIPWLKELLQALGLTPIEVEGQ 106
                 56799************************99887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2251.91
//
Query:       CCG91390.1  [L=120]
Description: Fe-S cluster assembly scaffold protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.8e-20   70.8   0.0    1.2e-19   70.5   0.0    1.0  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   6.8e-24   1.2e-19       4     111 .]      16     116 ..      15     116 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 6.8e-24
                  EE-HHHHHHHHHHHHCTTEC...EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEEE CS
  Fe-S_biosyn   4 tlteaAaeklkkllaedkke...lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLks 98 
                  ++te+Aa +lk+ l++++++   lr++v  gg       C+ g +y++++vd + e  d+ ++s+g+k++v+++s+ fl  g  ld++edl + g+  
   CCG91390.1  16 QITEKAALRLKEILEQSGRQegaLRISVVGGG-------CA-GLQYEMNIVDGP-ETKDIMIDSKGVKLIVDPKSALFL-SGSILDYSEDLLNQGFVV 103
                  69**************99999***********.......**.************.************************.9***************** PP

                  ETCCEEEEEEEEE CS
  Fe-S_biosyn  99 dngilddnvglgk 111
                  +n+++ +++++gk
   CCG91390.1 104 KNPNAVSHCSCGK 116
                  ***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 795.45
//
Query:       CCG91391.1  [L=417]
Description: Permease of the major facilitator superfamily [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-24   84.2  31.0    1.1e-23   83.7  31.0    1.2  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        0.1   11.2  11.3       0.65    8.6   1.9    3.0  3  ATG22     Vacuole effluxer Atg22 like


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7  31.0   1.2e-27   1.1e-23      13     352 ..      47     373 ..      21     374 .. 0.78

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 1.2e-27
       MFS_1  13 silgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaali 110
                 silgp+l        g+++s+ig+++++  l+  v  l++G+l+d+  + + ++++g+++  +++ ll+++ +++ + +l vl  +g g+ +p+  +l+
  CCG91391.1  47 SILGPFLG-----VVGATGSAIGFIAGIGELTGYVVRLVAGSLGDKTKSHWvFVFAGYFINQIAVPLLAIVKNWPQVGLLIVLERFGKGIRTPSRDVLL 140
                 33444443.....367899********************************99999********55555448888************************ PP

       MFS_1 111 adwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpv 208
                 ++ + +  rg+++g+  a  ++Ga+ gp l +l + ++ ++r +  +l i ++la++   +l+++ ++  k ++   + + +++   + + ++ l+   
  CCG91391.1 141 SHATEGVGRGFGFGIHEALDQVGAMTGPFLIALAImHWKSYRTALGLLIIPAFLALL---VLFVTHKRYQKLSAILVDCQPKEQNDKAGGKRQGLTE-S 235
                 ***************************9998888868888**************977...6676666666666555553222222233323333333.5 PP

       MFS_1 209 lwillialllfffgfsglltllplylqevlgls...glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavlll 304
                 +w  +++  l+f++  ++ + l  y   ++g +     +++ ll++l++ v ai+al+agrl d+ g   + + ++l+ l + l++++   t    +++
  CCG91391.1 236 FW--WYITGLGFLAAGYVDFPLIAY---HFGQKsifKEYEIPLLYMLAMGVDAIVALVAGRLFDKSGIGSMSWPIILGSLSSPLIFLFPIRT----VAI 325
                 64..444444434444455544444...4444455647***************************776556555555555555555555555....788 PP

       MFS_1 305 lvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 ++++++G+glg+  +++ a++++l+p e +gta+g+f ++++l+++lg
  CCG91391.1 326 IGIIFWGIGLGVQESAVRAAIASLVPIEIRGTAFGIFYFVFGLSWFLG 373
                 89*********************************************9 PP

>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2     0.025   2.2e+02      65     252 ..      55     115 ..      41     133 .. 0.55
   2 ?    7.3   0.1   0.00018       1.6     419     468 ..     153     202 ..     150     209 .. 0.91
   3 ?    8.6   1.9   7.2e-05      0.65     389     465 ..     329     403 ..     325     414 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.025
       ATG22  65 ieidtaSfvlytfslsvllqavvvislsglADygnyrknlLlafaligslstilfllvtpkkYllgavlyivsntcfgaslvllnsfLPllvredpelq 163
                 +  +t S + ++ ++  l+  vv ++ ++l D ++                                                                
  CCG91391.1  55 VVGATGSAIGFIAGIGELTGYVVRLVAGSLGDKTK---------------------------------------------------------------- 89 
                 44455555555555555555555555566655554................................................................ PP

       ATG22 164 eaeeeeeeeeessetaeeeeskelklstriSslGlaigylgailvqiisilivialgstatfslrlalllvGlwWliftipaalllkkr 252
                                                                                  ++++++G     +++p++ ++k+ 
  CCG91391.1  90 ---------------------------------------------------------------SHWVFVFAGYFINQIAVPLLAIVKNW 115
                 ...............................................................44444444444444444444444433 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00018
       ATG22 419 FsLyaitdkgssvigplivglItDrtgnirsafvflavLlvvplpllllv 468
                 F++ + +d+ +++ gp++++l + +++++r+a+ +l++  +++l +l++ 
  CCG91391.1 153 FGIHEALDQVGAMTGPFLIALAIMHWKSYRTALGLLIIPAFLALLVLFVT 202
                 8999*********************************9999999888754 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 7.2e-05
       ATG22 389 vvyglvlgglssysRslfseLiPrGkEaaFFsLyaitdkgssvigplivglItDrtgnirsafvflavLlvvplpll 465
                 ++ g+ lg  +s  R+++++L+P     + F+++ ++   s ++g+ ++g + D+  ++ +  +  ++L +++lpll
  CCG91391.1 329 IFWGIGLGVQESAVRAAIASLVPIEIRGTAFGIFYFVFGLSWFLGSCAMGFLYDK--SLAYVALSSFILQILSLPLL 403
                 688**********************99999************************8..57788888899999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2881.61
//
Query:       CCG91392.1  [L=210]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1121  (0.0625244); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.54
# Mc/sec: 1174.20
//
Query:       CCG91393.1  [L=168]
Description: Crossover junction endodeoxyribonuclease ruvC [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-43  148.1   0.0    1.8e-43  147.9   0.0    1.0  1  RuvC             Crossover junction endodeoxyribonuclease Ruv
  ------ inclusion threshold ------
       0.14   12.3   0.1       0.24   11.6   0.1    1.3  1  IRK_N            Inward rectifier potassium channel N-termina
       0.16   12.4   0.0       0.28   11.6   0.0    1.4  1  Ca_bind_SSO6904  Calcium binding protein SSO6904


Domain annotation for each model (and alignments):
>> RuvC  Crossover junction endodeoxyribonuclease RuvC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.9   0.0   3.1e-47   1.8e-43       1     148 []       7     153 ..       7     153 .. 0.99

  Alignments for each domain:
  == domain 1  score: 147.9 bits;  conditional E-value: 3.1e-47
                 EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE---S-HHHHHHHHHHHHHHHHHHH--SEEEEEE-S----HHHHHHHHHHHHHHHHHHHTTT--EEEE CS
        RuvC   1 ilGiDPGsrktGygvieeagrklslltsgvirtksdplserlkavfdaveelldayepdalaieqvffaknvdsvlklaqarGvvilaalereisvaey 99 
                 ilGiDP  rk Gyg++e++g++++l+++gvi+ + ++  +rl++++d++ e++++y p+++a+e+v f +n ++++ ++ arGv++l    + ++v+ey
  CCG91393.1   7 ILGIDPAIRKMGYGIVESNGDSVQLISYGVINGNGNDQVRRLRQLYDGLFEIVQKYVPEQVAMESVIFVQNRKTAIDMGAARGVALLLFSLKDLPVFEY 105
                 8************************************************************************************************** PP

                 EHHHHHHHHTSSTT--HHHHHHHHHHHTT----SS.S-THHHHHHHHHH CS
        RuvC 100 tpsqvkkavtGigkaekeqvqalvkrlLklkakpkpadaaDalavaith 148
                 +p+ vk a tG g+a keqv+++v+ +L l+  p padaaDalava++h
  CCG91393.1 106 SPRTVKIAATGRGSARKEQVSFMVRAILSLNYSP-PADAADALAVALAH 153
                 *******************************999.5***********99 PP

>> IRK_N  Inward rectifier potassium channel N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.1e-05      0.24       5      39 ..      15      49 ..      13      52 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.1e-05
       IRK_N  5 RahrYSIVSseEdglklstlalvNGfgnGkihtrr 39
                R   Y IV s  d ++l + ++ NG gn ++   r
  CCG91393.1 15 RKMGYGIVESNGDSVQLISYGVINGNGNDQVRRLR 49
                566699*******************9998876544 PP

>> Ca_bind_SSO6904  Calcium binding protein SSO6904
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.6e-05      0.28      51      82 ..      40      72 ..      20      76 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
                     HTHHHHHHTHHHHHHHHHHHHHHHT.TT-HHHH CS
  Ca_bind_SSO6904 51 nhveevkknkefydliskilekyak.kiGvenv 82
                     n  ++v++ +++yd + +i++ky + ++ +e v
       CCG91393.1 40 NGNDQVRRLRQLYDGLFEIVQKYVPeQVAMESV 72
                     56699******************9635777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1203.27
//
Query:       CCG91394.1  [L=200]
Description: Holliday junction ATP-dependent DNA helicase ruvA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-17   61.1   0.2    4.6e-16   58.7   0.0    2.3  3  RuvA_N           RuvA N terminal domain
    1.9e-13   50.8   0.2    4.4e-13   49.6   0.0    1.7  2  HHH_5            Helix-hairpin-helix domain
    4.3e-11   43.1   0.1    6.7e-11   42.5   0.1    1.3  1  RuvA_C           RuvA, C-terminal domain
    1.4e-07   31.0   1.1     0.0094   15.8   0.1    2.9  3  HHH              Helix-hairpin-helix motif
    0.00043   20.1   0.0       0.73    9.7   0.0    2.6  2  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
    0.00065   20.2   0.6       0.97   10.1   0.1    2.4  2  5_3_exonuc       5'-3' exonuclease, C-terminal SAM fold
    0.00073   19.8   0.0      0.098   13.0   0.0    2.2  2  Transposase_20   Transposase IS116/IS110/IS902 family
      0.001   19.2   0.1        1.7    9.1   0.1    2.6  2  IMS_HHH          IMS family HHH motif
  ------ inclusion threshold ------
       0.02   15.0   0.0       0.94    9.6   0.0    2.4  2  HHH_2            Helix-hairpin-helix motif
      0.022   14.7   0.0       0.69    9.9   0.0    2.4  3  HHH_4            Helix-hairpin-helix containing domain
       0.05   14.0   0.3        1.3    9.5   0.1    2.3  2  HHH_8            Helix-hairpin-helix domain
      0.053   13.4   0.0       0.19   11.6   0.0    2.0  1  DUF3173          Domain of unknown function (DUF3173)
      0.055   13.9   0.0        4.4    7.7   0.0    2.3  2  Ribosomal_S13    Ribosomal protein S13/S18
        0.1   12.8   0.1        3.8    7.9   0.0    2.5  2  HHH_3            Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> RuvA_N  RuvA N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   3.6e-19   4.6e-16       1      60 []       1      62 [.       1      62 [. 0.97
   2 ?   -0.8   0.0       1.3   1.7e+03      17      31 ..      74      89 ..      66     110 .. 0.69
   3 ?   -3.1   0.0       7.2   9.2e+03       5      20 ..     114     128 ..     111     130 .. 0.64

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 3.6e-19
                -EEEEEEEEEEESSCEEEEEETTEEEEEEE-HHHHCC..-TTSEEEEEEEEEEETTEEEEEE CS
      RuvA_N  1 MIaylkGkvvekepdsivvevggvGYevfvplstlss..kegeevklythlivrEdalsLYG 60
                MI+ylkG++++ +  +i+ve +g+G+e+f +ls ++s  + ++ev lythl+v+E+ ++L+G
  CCG91394.1  1 MISYLKGILIYCSFPTIIVESHGIGFEIFSSLSLYQSlpPLHSEVSLYTHLNVSENRFELFG 62
                ************9999*******************99*988999*****************9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.3
                EEEE.ETTEEEEEEE- CS
      RuvA_N 17 ivve.vggvGYevfvp 31
                i+ve v+gvG +  ++
  CCG91394.1 74 ILVEkVHGVGPKTAIT 89
                6665489999776666 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 7.2
                 EEEEEEEESSCEEEEE CS
      RuvA_N   5 lkGkvvekepdsivve 20 
                 +kG + ek+  ++vve
  CCG91394.1 114 IKG-IGEKTAHRLVVE 128
                 666.456666677776 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   3.4e-16   4.4e-13       4      57 .]      76     131 ..      72     131 .. 0.88
   2 ?   -2.8   0.0       8.1     1e+04      34      49 ..     156     170 ..     147     178 .. 0.51

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 3.4e-16
                 HHTSTT--HHHHHHHHTTT.--SH.HHHHHS-HHHHHTSTTS-HHHHHHHHHHHHH CS
       HHH_5   4 LlsvsGiGpktAlallsaG.iesv.edlaaadveeLakipGiGkktAeriilelkd 57 
                 + +v G+GpktA+++l+    + + e++ ++d   L+ki+GiG+ktA r++ elkd
  CCG91394.1  76 VEKVHGVGPKTAITILNVLpPKEFkEAIYREDYRVLSKIKGIGEKTAHRLVVELKD 131
                 579***************64665538999**************************8 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 8.1
                 HHHHHTSTTS-HHHHH CS
       HHH_5  34 veeLakipGiGkktAe 49 
                  ++L ++ G+ +  A 
  CCG91394.1 156 LKALVAL-GFKETEAV 170
                 4444444.44444333 PP

>> RuvA_C  RuvA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.1   5.2e-14   6.7e-11       3      45 ..     152     195 ..     150     196 .. 0.96

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 5.2e-14
                 HHHHHHHHHHCTS-HHHHHHHHHHHHC.-TTS-HHHHHHHHHCC CS
      RuvA_C   3 ledaveALlaLGYkekeaekAvakvla.npgasveelIraALkl 45 
                  ed + AL+aLG+ke ea k v+kv + +p+ + e +Ir++Lkl
  CCG91394.1 152 FEDSLKALVALGFKETEAVKLVRKVREkEPEKDLEGVIRECLKL 195
                 699***************************************97 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   7.4e-06    0.0094      14      29 ..      77      92 ..      75      93 .. 0.90
   2 !   12.8   0.0   6.6e-05     0.085      13      26 ..     111     124 ..     111     126 .. 0.89
   3 ?   -1.8   0.0       2.7   3.5e+03       3      16 ..     149     162 ..     147     162 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.4e-06
                HTSTT-SHHHHHHHHH CS
         HHH 14 lalPGVGpktAeaIls 29
                +++ GVGpktA  Il+
  CCG91394.1 77 EKVHGVGPKTAITILN 92
                58************96 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 6.6e-05
                 HHTSTT-SHHHHHH CS
         HHH  13 LlalPGVGpktAea 26 
                 L +++G+G+ktA +
  CCG91394.1 111 LSKIKGIGEKTAHR 124
                 789*********87 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.7
                 HHHHTSSHHHHHTS CS
         HHH   3 eglipasreeLlal 16 
                 + ++++s++ L+al
  CCG91394.1 149 DQIFEDSLKALVAL 162
                 67899999999886 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00057      0.73       5      14 ..      78      87 ..      75      92 .. 0.88
   2 !    7.6   0.0    0.0026       3.3       2      18 ..     110     126 ..     109     128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00057
  DNA_pol_lambd_f  5 kvyGVGpktA 14
                     kv+GVGpktA
       CCG91394.1 78 KVHGVGPKTA 87
                     9********9 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0026
  DNA_pol_lambd_f   2 lFtkvyGVGpktAkkwy 18 
                       ++k+ G+G ktA++++
       CCG91394.1 110 VLSKIKGIGEKTAHRLV 126
                      589***********987 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0026       3.3      21      36 ..      77      92 ..      75     103 .. 0.89
   2 !   10.1   0.1   0.00075      0.97      22      40 ..     113     131 ..     110     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0026
  5_3_exonuc 21 pGvpgiGektAakLlk 36
                + v+g+G+ktA+++l+
  CCG91394.1 77 EKVHGVGPKTAITILN 92
                679**********998 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00075
  5_3_exonuc  22 GvpgiGektAakLlkeygs 40 
                  ++giGektA +L+ e ++
  CCG91394.1 113 KIKGIGEKTAHRLVVELKD 131
                 69***********999876 PP

>> Transposase_20  Transposase IS116/IS110/IS902 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.032        41       4      22 ..      76      94 ..      74     102 .. 0.79
   2 !   13.0   0.0   7.7e-05     0.098       2      24 ..     109     131 ..     108     135 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.032
  Transposase_20  4 LesipGiGpvtaaallaei 22
                    +e + G+Gp ta+++l  +
      CCG91394.1 76 VEKVHGVGPKTAITILNVL 94
                    78899*********98655 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 7.7e-05
  Transposase_20   2 elLesipGiGpvtaaallaeigd 24 
                     ++L+ i+GiG+ ta +l++e+ d
      CCG91394.1 109 RVLSKIKGIGEKTAHRLVVELKD 131
                     789*****************977 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0045       5.8      13      24 ..      76      87 ..      66      94 .. 0.86
   2 !    9.1   0.1    0.0013       1.7      13      27 ..     111     125 ..     111     129 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0045
     IMS_HHH 13 itkipGiGgklg 24
                + k++G+G+k++
  CCG91394.1 76 VEKVHGVGPKTA 87
                689********8 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0013
     IMS_HHH  13 itkipGiGgklgekL 27 
                 ++ki GiG k++ +L
  CCG91394.1 111 LSKIKGIGEKTAHRL 125
                 79**********998 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.024        31      38      62 ..      77     101 ..      68     103 .. 0.82
   2 ?    9.6   0.0   0.00073      0.94      27      52 ..     101     126 ..      79     133 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.024
       HHH_2  38 levddiGeeiAqsivefFeneknre 62 
                  +v+++G+++A  i + +  ++ +e
  CCG91394.1  77 EKVHGVGPKTAITILNVLPPKEFKE 101
                 579**********999887776666 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00073
       HHH_2  27 daLkkasleeLlevddiGeeiAqsiv 52 
                 +a+ + ++  L+++++iGe++A+  v
  CCG91394.1 101 EAIYREDYRVLSKIKGIGEKTAHRLV 126
                 678888999999*******9999765 PP

>> HHH_4  Helix-hairpin-helix containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0        10   1.3e+04      48      55 ..      21      28 ..      17      37 .. 0.66
   2 ?    9.9   0.0   0.00054      0.69      14      63 ..      79     129 ..      67     139 .. 0.87
   3 ?    2.3   0.0      0.13   1.6e+02       7      32 ..     154     179 ..     148     199 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 10
       HHH_4 48 vegigFkt 55
                  gigF+ 
  CCG91394.1 21 SHGIGFEI 28
                56777765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00054
       HHH_4  14 eygisaklaekiykkygee.aleilkenPYrliedvegigFktaDkiakkl 63 
                  +g+++k a  i + +  + + e++ ++ Yr++ +++gig kta ++  +l
  CCG91394.1  79 VHGVGPKTAITILNVLPPKeFKEAIYREDYRVLSKIKGIGEKTAHRLVVEL 129
                 59**************7776999********************99987766 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.13
       HHH_4   7 eimeflqeygisaklaekiykkygee 32 
                 + ++ l  +g+++++a+k+++k +e+
  CCG91394.1 154 DSLKALVALGFKETEAVKLVRKVREK 179
                 55667777777777777777776555 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.081     1e+02      49      62 ..      76      89 ..      63      94 .. 0.71
   2 ?    9.5   0.1     0.001       1.3      32      63 ..      88     125 ..      85     129 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.081
                CTTSTT--HHHHHH CS
       HHH_8 49 ltklpgiGkkiaak 62
                ++k+ g+G+k+a  
  CCG91394.1 76 VEKVHGVGPKTAIT 89
                599********965 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.001
                 HCCCCC-SS.-HHHH..TT...HCTTSTT--HHHHHHH CS
       HHH_8  32 araiealpe.eitsl..ee...eltklpgiGkkiaaki 63 
                 ++ +  lp  e +++  +e    l+k++giG+k+a ++
  CCG91394.1  88 ITILNVLPPkEFKEAiyREdyrVLSKIKGIGEKTAHRL 125
                 55555555556666666444655799*********875 PP

>> DUF3173  Domain of unknown function (DUF3173)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.19       6      27 ..     157     178 ..     155     180 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
     DUF3173   6 kdLiklGfkehtArdiIrqaKk 27 
                 k L++lGfke+ A +++r+ ++
  CCG91394.1 157 KALVALGFKETEAVKLVRKVRE 178
                 679***************9886 PP

>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.041        52       6      33 ..      65      92 ..      61     102 .. 0.84
   2 ?    7.7   0.0    0.0035       4.4      16      36 ..     110     130 ..     104     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.041
  Ribosomal_S13  6 didgkkkveialtaikGiGrrkakiilk 33
                   d++++   +i + +++G+G ++a +il+
     CCG91394.1 65 DLEEQLTFRILVEKVHGVGPKTAITILN 92
                   56666777888999**********9987 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0035
  Ribosomal_S13  16 altaikGiGrrkakiilkkad 36 
                     l +ikGiG+++a+ ++ +++
     CCG91394.1 110 VLSKIKGIGEKTAHRLVVELK 130
                    5899**********9987653 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.18   2.3e+02      17      31 ..      77      91 ..      74      93 .. 0.74
   2 ?    7.9   0.0    0.0029       3.8      15      31 ..     110     126 ..     107     132 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.18
       HHH_3 17 qklpGlgpklAknIv 31
                +k++G+gpk+A  I+
  CCG91394.1 77 EKVHGVGPKTAITIL 91
                578888888887665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0029
       HHH_3  15 eLqklpGlgpklAknIv 31 
                  L+k++G+g+k+A+++v
  CCG91394.1 110 VLSKIKGIGEKTAHRLV 126
                 58999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1382.63
//
Query:       CCG91395.1  [L=338]
Description: holliday junction helicase, subunit B [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-72  242.0   0.0    2.9e-72  241.6   0.0    1.2  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    5.7e-25   86.9   0.1    9.8e-25   86.1   0.1    1.4  1  AAA_lid_4        RuvB AAA lid domain
    7.2e-25   86.7   0.0    1.8e-24   85.4   0.0    1.7  1  RuvB_C           RuvB C-terminal winged helix domain
    2.6e-17   63.5   0.0    6.6e-17   62.2   0.0    1.7  2  AAA              ATPase family associated with various cellul
    1.4e-06   28.4   0.1    6.4e-05   23.0   0.1    2.4  1  AAA_5            AAA domain (dynein-related subfamily)
    6.5e-05   22.9   0.0    9.8e-05   22.3   0.0    1.3  1  Rad17            Rad17 P-loop domain
    6.7e-05   22.3   0.1    0.00085   18.6   0.0    2.1  2  TIP49            TIP49 P-loop domain
    0.00038   20.9   0.0     0.0012   19.3   0.0    1.7  2  AAA_16           AAA ATPase domain
    0.00077   18.9   0.2      0.044   13.2   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00087   19.8   0.0      0.002   18.7   0.0    1.6  1  AAA_18           AAA domain
     0.0022   17.2   0.1        1.5    7.9   0.0    2.4  2  NB-ARC           NB-ARC domain
     0.0039   17.5   0.8          1    9.6   0.0    2.9  3  AAA_22           AAA domain
     0.0084   16.1   0.0        1.1    9.2   0.0    2.2  2  ResIII           Type III restriction enzyme, res subunit
     0.0097   15.6   0.0        4.8    6.8   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.092   12.6   0.0    2.2  2  AAA_3            ATPase family associated with various cellul
      0.018   15.4   0.0      0.035   14.5   0.0    1.5  1  RNA_helicase     RNA helicase
       0.03   14.4   0.0      0.098   12.8   0.0    1.8  2  Sigma54_activ_2  Sigma-54 interaction domain
      0.047   13.7   0.0      0.094   12.7   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.067   12.6   0.1       0.46    9.9   0.0    2.1  2  TniB             Bacterial TniB protein
      0.074   12.8   0.0       0.58    9.8   0.0    2.1  1  AAA_24           AAA domain
      0.098   12.6   0.0       0.26   11.2   0.0    1.7  2  NTPase_1         NTPase
       0.11   12.8   0.2        5.8    7.2   0.0    2.7  3  AAA_19           AAA domain
       0.12   12.6   0.0       0.23   11.6   0.0    1.5  1  AAA_33           AAA domain
       0.14   11.2   0.0       0.22   10.5   0.0    1.3  1  T2SSE            Type II/IV secretion system protein


Domain annotation for each model (and alignments):
>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.6   0.0   3.9e-75   2.9e-72       1     159 []      21     179 ..      21     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 241.6 bits;  conditional E-value: 3.9e-75
      RuvB_N   1 lrPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaalltnleekdvlfideihrlsra 99 
                 lrP++l +++gqek+ke+l i+++aak ++e+l h+l++GpPGlGkttla+i++ke++++lkitsgP+l+ka++la++lt+le+ d lfideihrlsr 
  CCG91395.1  21 LRPQKLGDFLGQEKIKERLYILVQAAKIKKEPLPHLLFSGPPGLGKTTLAHILSKEMNASLKITSGPALDKAANLAGILTTLESFDFLFIDEIHRLSRP 119
                 8************************************************************************************************** PP

      RuvB_N 100 veevlysamedfrldivigkGpsarsikldlpkftlvgattragllssPlrdrfgivarl 159
                 vee+ly+amedfr+di+i++Gp+arsi+l+lpkftlvgattr+gll++Plr+rfg+++rl
  CCG91395.1 120 VEEYLYPAMEDFRMDILIDQGPNARSIRLNLPKFTLVGATTRVGLLTEPLRSRFGLINRL 179
                 ********************************************************9987 PP

>> AAA_lid_4  RuvB AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.1   1.3e-27   9.8e-25       1      74 []     182     255 ..     182     255 .. 0.99

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 1.3e-27
   AAA_lid_4   1 YeeeeLeeivkrsakilgveieeegaaeiarRsRGTPRianrLLrRvrDfaqvkgdgkitkevakkaLellevd 74 
                 Y+ eeL +iv+rs++il++e++e +a+e+a+R+RGTPR an LL+ +rD++  kg++ki+ +v+++aL+++e+d
  CCG91395.1 182 YKLEELVKIVQRSSRILEMEMNEPAAKEVAKRCRGTPRTANHLLKWIRDYSYAKGHQKISLDVVNNALAMIEID 255
                 999*********************************************************************98 PP

>> RuvB_C  RuvB C-terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   2.4e-27   1.8e-24       1      72 []     256     327 ..     256     327 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 2.4e-27
                 TT---HHHHHHHHHHHHT.TT--B-HHHHHHHTT--HHHHHHTTHHHHHHTTSEEEETTEEEE-HHHHHHHH CS
      RuvB_C   1 elGLdeldikyLkllkekfkggpvglktlaailgeeketiedviEPyLlkeglIertsrGRilTkkglkylk 72 
                 e GLde+d+k+L+++ +kf+ggpvgl++la ++ge+  t+e+v EPyL++eg+I+rt++GR +T+++++ lk
  CCG91395.1 256 EDGLDEMDKKILETIVYKFEGGPVGLQSLAVAVGEDPGTLEEVHEPYLIMEGYIKRTPQGRVVTTRAYEKLK 327
                 57******************************************************************9885 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   8.8e-20   6.6e-17       1     128 [.      56     177 ..      56     181 .. 0.93
   2 ?   -2.3   0.0       7.3   5.4e+03      84      99 ..     219     234 ..     200     267 .. 0.66

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 8.8e-20
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +l++GppG GKT+la+ + ke+++++  +sg+ l       ++++++++++++++      lfiDEi++l +              + L++++++++ +
  CCG91395.1  56 LLFSGPPGLGKTTLAHILSKEMNASLKITSGPALD------KAANLAGILTTLESF---DFLFIDEIHRLSRPV-----------EEYLYPAMEDFRMD 134
                 69*********************************......9********998765...6**********6555...........9************* PP

                 ...............SSTEEEEEEESSGGGSTHHHHSTTSSEEE CS
         AAA 100 ...............eskvivigatnrpdkldpallrgRfdrki 128
                                  k++++gat+r+  l+++l+ +Rf  + 
  CCG91395.1 135 ilidqgpnarsirlnLPKFTLVGATTRVGLLTEPLR-SRFGLIN 177
                 ***************889******************.9*98665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.3
                 HHHHHHHHHHHHTTTS CS
         AAA  84 rvvnqLlteldgvkkk 99 
                 r++n+Ll+ + +++  
  CCG91395.1 219 RTANHLLKWIRDYSYA 234
                 6677777777776654 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   8.6e-08   6.4e-05       1     138 []      55     173 ..      55     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 8.6e-08
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-S CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeg 99 
                 ++l  GppG gK++la  l++ +n+++ +  +++  ++++l g +                  ++ + l++DE++r+++ v + L + +e+ r+++   
  CCG91395.1  55 HLLFSGPPGLGKTTLAHILSKEMNASLKITSGPALDKAANLAGILT---------------TLESFDFLFIDEIHRLSRPVEEYLYPAMEDFRMDILID 138
                 68999*****************************888888877776...............577889**************************997655 PP

                 SSEEE---......-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5 100 gelvkaknddllerfrviatanpldrslnelspalrsRf 138
                 ++    +    l++f++++++ ++      l+++lrsRf
  CCG91395.1 139 QGPNARSIRLNLPKFTLVGATTRVG----LLTEPLRSRF 173
                 54443333225677*******9999....8899999998 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.3e-07   9.8e-05      25      81 ..      32      89 ..      13     133 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.3e-07
       Rad17 25 kkkiee.vkewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklrewlnpvs 81
                ++ki+e +   ++a  +++++   LL sGP+G gk+t  ++Lske+  +l+  + p +
  CCG91395.1 32 QEKIKErLYILVQAAKIKKEPLPHLLFSGPPGLGKTTLAHILSKEMNASLKITSGPAL 89
                455555244455777778888889***********************99998887766 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.1e-06   0.00085      24      80 ..      27      83 ..      15      88 .. 0.86
   2 ?    0.9   0.2      0.29   2.1e+02     282     305 ..     108     131 ..     105     140 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.1e-06
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 24 eglvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelgedvpf 80
                + ++Gq+k +e   ++v+  k kk     +L++Gp+g Gkt la  +ske++++++ 
  CCG91395.1 27 GDFLGQEKIKERLYILVQAAKIKKEPLPHLLFSGPPGLGKTTLAHILSKEMNASLKI 83
                5689**************9999998889***********************988765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.29
                 XXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 282 lfiDevhmlDiecfsylnralese 305
                 lfiDe+h l   +  yl  a+e+ 
  CCG91395.1 108 LFIDEIHRLSRPVEEYLYPAMEDF 131
                 9********999999999999975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.5e-06    0.0012       2      51 ..      29      80 ..      28     109 .. 0.81
   2 ?   -1.5   0.0         4     3e+03     126     149 ..      95     118 ..      87     137 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.5e-06
      AAA_16  2 lvGReeeleqLlsalervrsgrp..elvllsGesGvGKsslvrellralekd 51
                + G e+  e+L  ++++++   +  + +l+sG++G GK++l+  l ++++++
  CCG91395.1 29 FLGQEKIKERLYILVQAAKIKKEplPHLLFSGPPGLGKTTLAHILSKEMNAS 80
                778999999999999977666666******************9998887776 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4
      AAA_16 126 llallsrderplvlvlDdlqwade 149
                 l+  l++ e+   l++D+++++  
  CCG91395.1  95 LAGILTTLESFDFLFIDEIHRLSR 118
                 555555556666899999999876 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   5.9e-05     0.044      23      44 ..      54      75 ..      26      94 .. 0.77
   2 ?    3.5   0.0     0.055        41     109     137 ..     107     135 ..      96     159 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.9e-05
  Mg_chelatase 23 HnlllvGppGsGKtmlakrlps 44
                   +ll+ GppG GKt la+ l++
    CCG91395.1 54 PHLLFSGPPGLGKTTLAHILSK 75
                  58***************98865 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.055
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledgevti 137
                    Lf+DE+  ++r v e L   +ed ++ i
    CCG91395.1 107 FLFIDEIHRLSRPVEEYLYPAMEDFRMDI 135
                   69*********************998776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.7e-06     0.002       3      80 ..      58     138 ..      56     151 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.7e-06
      AAA_18   3 ltGtpGvGKttlakeLskrlgf......gvnlrdvakenglllevdpe...aldeskrldedkldklldaleenssaleegknlvid 80 
                  +G+pG GKttla+ Lsk+++       g  l + a   g+l++ + +    +de +rl +++ ++l  a+e  +       +++id
  CCG91395.1  58 FSGPPGLGKTTLAHILSKEMNAslkitsGPALDKAANLAGILTTLESFdflFIDEIHRLSRPVEEYLYPAMEDFR------MDILID 138
                 68*****************95569999877777777777777777777777667777777777666666666554......345555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0     0.002       1.5      23      42 ..      56      75 ..      39      82 .. 0.80
   2 !    6.9   0.0    0.0041       3.1     178     204 ..     198     224 ..     174     276 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.002
                EEEEESTTSSHHHHHHHHCC CS
      NB-ARC 23 valvGmgGvGKttlakqiln 42
                + ++G +G+GKttla+   +
  CCG91395.1 56 LLFSGPPGLGKTTLAHILSK 75
                6789**********975544 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0041
                 CHH..CHHHHHHHHHHCTT-HHHHHHH CS
      NB-ARC 178 eekesleevakeivekckGlPlalkvl 204
                  e e  e  ake++++c+G P + + l
  CCG91395.1 198 LEMEMNEPAAKEVAKRCRGTPRTANHL 224
                 455557899************998776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0014         1       7      28 ..      55      76 ..      53      99 .. 0.85
   2 ?    4.6   0.0     0.047        35      93     112 ..     106     124 ..      95     160 .. 0.77
   3 ?   -0.7   0.0       2.1   1.6e+03      61      93 ..     207     241 ..     178     275 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0014
      AAA_22  7 ilvvtGesGtGKTtllrrlleq 28
                +l+  G++G GKTtl+  l ++
  CCG91395.1 55 HLLFSGPPGLGKTTLAHILSKE 76
                67889**********9877766 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.047
      AAA_22  93 elliiDEaqhlrseealeeL 112
                  +l iDE+++l s  + e+L
  CCG91395.1 106 DFLFIDEIHRL-SRPVEEYL 124
                 5899*******.86666666 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.1
      AAA_22  61 lralglelkaerlsseellealeqalrarav..ie 93 
                 ++++  ++ + + +  +ll+ +++++ a++   i+
  CCG91395.1 207 AKEVAKRCRGTPRTANHLLKWIRDYSYAKGHqkIS 241
                 45555555557788888888888888887774433 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.021        16      17      50 ..      46      79 ..      29      85 .. 0.71
   2 !    9.2   0.0    0.0015       1.1     108     148 ..      83     122 ..      73     161 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.021
                ......TTSEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII 17 eklkskrdkrglikmaTGtGKTlvaaklierllk 50
                +k+k++   ++l+  + G GKT +a  l +++  
  CCG91395.1 46 AKIKKEPLPHLLFSGPPGLGKTTLAHILSKEMNA 79
                4555455559************999877777655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0015
                 EEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...T CS
      ResIII 108 vttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..k 148
                 +t+  +ld++    + +      ++fd+++iDE Hrl++   +
  CCG91395.1  83 ITSGPALDKAA---NLAGILTTLESFDFLFIDEIHRLSRPveE 122
                 55555555555...55566677889************996541 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0065       4.8      14      47 ..      44      78 ..      30     102 .. 0.76
   2 !    6.6   0.0    0.0076       5.7      96     123 ..     107     134 ..      93     172 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0065
                     HHHHHCTSS.S-EEEECSTTSSHHHHHHHHHHHST CS
  Sigma54_activat 14 qikkvaktd.lsvlitGesGtGKellaraiheask 47
                     q++k+ k +  ++l  G  G GK++la+ + ++ +
       CCG91395.1 44 QAAKIKKEPlPHLLFSGPPGLGKTTLAHILSKEMN 78
                     4555556664578889***********99987655 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0076
                      EEEEETGGGS-HHHHHHHHHHHHHSEEE CS
  Sigma54_activat  96 tlfLDeigelplelQekLlrvlqegeve 123
                       lf+Dei++l+  + e L  ++++ ++ 
       CCG91395.1 107 FLFIDEIHRLSRPVEEYLYPAMEDFRMD 134
                      79****************9999987665 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012     0.092       1      28 [.      55      82 ..      55      90 .. 0.92
   2 ?   -0.4   0.0       1.3   9.5e+02      64      91 ..     106     133 ..     103     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
       AAA_3  1 hvllegvPGlaktllvkalakaldlefk 28
                h+l+ g PGl+kt+l++ l+k +++++k
  CCG91395.1 55 HLLFSGPPGLGKTTLAHILSKEMNASLK 82
                99*********************98875 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.3
       AAA_3  64 nllladeinrappktqsalleameerqv 91 
                 ++l+ dei r +  ++  l  ame+ ++
  CCG91395.1 106 DFLFIDEIHRLSRPVEEYLYPAMEDFRM 133
                 57889*******99*9999999998665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.7e-05     0.035       2      29 ..      57      84 ..      56     115 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.7e-05
  RNA_helicase  2 wlyGpsgeGKStlakeLakallkklklk 29
                  +++Gp+g GK+tla+ L+k++  +lk +
    CCG91395.1 57 LFSGPPGLGKTTLAHILSKEMNASLKIT 84
                  799******************9988654 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00013     0.098      15      92 ..      46     127 ..      32     144 .. 0.76
   2 ?   -2.1   0.0       4.9   3.7e+03      88     119 ..     174     206 ..     171     209 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                      HHHHT-SS-.EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH..-HHHHHHHT.TTSEEEEEE-TT--HHHHHHHHHH CS
  Sigma54_activ_2  15 eqaaqsklp.vfltGekGsgkelvArlLhknsgpwleifvverlak..lpldlleqa.kggtLylkdiadlskaeqkeLlel 92 
                      ++++++ lp ++  G++G+gk++ A +L+k+    l+i+    l k    + +l ++ +   L++ +i+ ls+    +L+ +
       CCG91395.1  46 AKIKKEPLPhLLFSGPPGLGKTTLAHILSKEMNASLKITSGPALDKaaNLAGILTTLeSFDFLFIDEIHRLSRPVEEYLYPA 127
                      56677777745668*******************9999987655554224456666653457999******999888888765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.9
                      HHHHHHHHHT.TTT-EEEEEEEE-TTT..---- CS
  Sigma54_activ_2  88 eLlellakae.ksslrlVstsskdleqlleaga 119
                      +L ++l+  + ++ +++V  ss+ le +++++a
       CCG91395.1 174 GLINRLEYYKlEELVKIVQRSSRILEMEMNEPA 206
                      567777777767788999999999999988876 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00013     0.094      21      50 ..      48      85 ..      24      88 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
                E.......EEEEESTTSSHHHHHHHHHHHTT--.---- CS
        TsaE 21 v.......ilLeGdLGaGKTtlvrglakalgve.evkS 50
                +       +l++G+ G GKTtl++ l k+++ + +++S
  CCG91395.1 48 IkkeplphLLFSGPPGLGKTTLAHILSKEMNASlKITS 85
                1333445599********************99999998 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00061      0.46      16      55 ..      32      73 ..      20      90 .. 0.81
   2 ?    0.5   0.0      0.46   3.4e+02     120     132 ..     105     117 ..      71     122 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00061
        TniB 16 akeilerLeeLleypk..rkrmpnlllvGdsnnGKtmivekF 55
                 ++i erL  L++++k  ++  p+ll+ G++  GKt++++  
  CCG91395.1 32 QEKIKERLYILVQAAKikKEPLPHLLFSGPPGLGKTTLAHIL 73
                57899999999999884244459**************98755 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.46
        TniB 120 vrvLiiDEihnll 132
                    L iDEih+l 
  CCG91395.1 105 FDFLFIDEIHRLS 117
                 46899*****985 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00078      0.58       7      86 ..      58     125 ..      54     134 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00078
      AAA_24   7 iyGpsgiGKTtlakel.gpkplfidtekGlksldadkfpdieswedfldevvel...aaeladyktlviDtideleelclaevi 86 
                   Gp+g GKTtla  l +       ++++lk + +  ++          +++ l    + l+ ++ l+iD i  l + + ++++
  CCG91395.1  58 FSGPPGLGKTTLAHILsK------EMNASLKITSGPALD----------KAANLagiLTTLESFDFLFIDEIHRLSRPVEEYLY 125
                 569*********998822......233333333333322..........22222233677777888888888888888888875 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00034      0.26       1      25 [.      55      79 ..      55      88 .. 0.83
   2 ?   -3.3   0.0       9.8   7.3e+03      92     104 ..     101     113 ..      92     118 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00034
                EEEEE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvlellks 25
                +++ +GppG GKtTl + ++++++ 
  CCG91395.1 55 HLLFSGPPGLGKTTLAHILSKEMNA 79
                56789************99988754 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.8
                 HHHHH-EEEE--- CS
    NTPase_1  92 alseadviviDEi 104
                 +l++ d + iDEi
  CCG91395.1 101 TLESFDFLFIDEI 113
                 4577788999999 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0078       5.8       9      35 ..      52      78 ..      44      90 .. 0.72
   2 ?   -1.1   0.0       2.9   2.1e+03     100     125 ..     102     128 ..      88     137 .. 0.71
   3 ?    2.1   0.0      0.31   2.3e+02      32     123 ..     185     268 ..     178     286 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0078
      AAA_19  9 kekvllvtaGpGtGKTrvlkhivallv 35
                + ++ll  ++pG GKT++ +   ++++
  CCG91395.1 52 PLPHLLFSGPPGLGKTTLAHILSKEMN 78
                55678899********97666655555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.9
      AAA_19 100 lqeee.llivDEfqdvd.elqyrLlkal 125
                 l e +  l++DE+  ++ +++  L  a+
  CCG91395.1 102 L-ESFdFLFIDEIHRLSrPVEEYLYPAM 128
                 5.3444999***9999877777666665 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.31
      AAA_19  32 allvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelleeaeeekklqeee.llivDEfqdvdelqyrLlk 123
                 ++lv++ +++  +il + +++ Aake+++r+    +  +T  +l  l++ ++ + a +   ++ + + ++++  ++ +DE   +de+ +++l+
  CCG91395.1 185 EELVKIVQRS-SRILEMEMNEPAAKEVAKRC---RGTPRTANHL--LKWIRDYSYAKGH--QKISLDVVNNALaMIEIDE-DGLDEMDKKILE 268
                 5666666654.89999999999********9...5555555555..5555555444444..3333334434444556666.334555555554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00031      0.23       3      23 ..      57      77 ..      56      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00031
      AAA_33  3 llvGlpGsGKstlaerllkkl 23
                l+ G+pG GK+tla+ l k+ 
  CCG91395.1 57 LFSGPPGLGKTTLAHILSKEM 77
                799***********9887765 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00029      0.22     131     156 ..      55      80 ..      16      85 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00029
       T2SSE 131 lilvsGgTgsGKttllyallkeinks 156
                  +l+sG+ g GKttl+ +l ke+n+s
  CCG91395.1  55 HLLFSGPPGLGKTTLAHILSKEMNAS 80 
                 689*******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 2309.89
//
Query:       CCG91396.1  [L=138]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-36  123.6   0.0    4.7e-36  123.4   0.0    1.0  1  UPF0047   Uncharacterised protein family UPF0047


Domain annotation for each model (and alignments):
>> UPF0047  Uncharacterised protein family UPF0047
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.0   2.6e-40   4.7e-36       2     115 .]      21     135 ..      20     135 .. 0.97

  Alignments for each domain:
  == domain 1  score: 123.4 bits;  conditional E-value: 2.6e-40
                 -HHHHHHHHHHHT.SEEEEEEEESSSSEEEEEEESSSHHHHHHHHHHHHHHSTTT...T-GGGTTS..THHHHHHHHHH-SEEEEEEETTEE---TTEE CS
     UPF0047   2 iteeveeavkesgvkeGlvlvfsrhttasltinEnadpdvqeDleealeklvpee...eYrhnaegpdnadaHlkssllgssltipvedgklalGtwqs 97 
                 +t+++ee+vk+sg++eGl+l+ ++h tas++in+n +++++eD+e++le+l+pe+   +Y+hn  g+dnadaHlk++++g++++i v+ gkl+lG w++
  CCG91396.1  21 LTPKLEECVKKSGIQEGLLLCNAMHITASVFINDN-EAGLHEDFERWLERLAPEKpysQYKHN-VGEDNADAHLKRTIMGREVVIAVTGGKLDLGPWEQ 117
                 799********************************.******************9999*****.699******************************** PP

                 EEEEESS-SSEEEEEEEE CS
     UPF0047  98 iylveldgpreRkvvvqv 115
                 +++ e+dg+r+++v+v++
  CCG91396.1 118 VFYGEFDGKRRKRVLVKI 135
                 ************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 883.12
//
Query:       CCG91397.1  [L=187]
Description: Rhodanese-related sulfurtransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-12   47.2   0.0    3.8e-12   46.7   0.0    1.3  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   2.1e-16   3.8e-12      15     106 ..      65     144 ..      50     145 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 2.1e-16
   Rhodanese  15 a..llDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGGfkawke 106
                 a  llDvR+ +eYe +h+ +A  v            +p  ++   ++ l  ++++++vvy++ g raa+ a+ l+++G+ +v++l+G++ +w++
  CCG91397.1  65 ApvLLDVRTVDEYEVSHLYHAWRV------------SPNEKIRLGYRGL--KREQPIVVYDSVGFRAASFARRLQQAGFWQVCYLEGSIFKWAN 144
                 255*********************............4555555555555..67*************9999999999****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1430.24
//
Query:       CCG91398.1  [L=518]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.026   14.9   5.8      0.026   14.9   5.8    5.7  5  Snapin_Pallidin  Snapin/Pallidin
      0.069   13.4  70.5      0.043   14.1   8.2    6.7  7  ABC_tran_CTD     ABC transporter C-terminal domain
        1.9    8.5  34.2       0.17   12.0   5.8    3.6  3  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP


Domain annotation for each model (and alignments):
>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.32   1.9e+03      71      86 ..      95     110 ..      55     113 .. 0.68
   2 ?   -4.3  13.0         3   1.8e+04      11      86 ..     132     209 ..     126     218 .. 0.62
   3 ?   14.9   5.8   4.3e-06     0.026      31      88 ..     224     279 ..     210     281 .. 0.93
   4 ?    7.4   9.9   0.00096       5.8      25      85 ..     289     351 ..     276     358 .. 0.84
   5 ?    4.5   5.2    0.0079        47       8      49 ..     368     409 ..     364     423 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.32
  Snapin_Pallidin  71 rmsslnerlqklkkRa 86 
                      r++ ++e+ ++++ R+
       CCG91398.1  95 RLKYVQEKASEVQNRL 110
                      5556666666666665 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 3
  Snapin_Pallidin  11 lepkldeldeklkelrqsQeeLleq..ldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlqklkkRa 86 
                      le  l e+++kl++l+qs +  +++   +r++++L++l ++ ++e+++  +  +k + + + +++ l++++ +l+k +
       CCG91398.1 132 LENRLAEIEAKLAKLEQSKSLPASEseQNREAQELQNLFQNLQKELIQVKMARKKQMEAQEEKINVLSSQVASLQKEL 209
                      666677777777777777654443300335666666666666544444444444556666677888888888888765 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 4.3e-06
  Snapin_Pallidin  31 eLleqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlqklkkRaek 88 
                       L+++l+ l e+Lk+++ +++  +++++++ ++K++++  +++sl++ lq++k+  ++
       CCG91398.1 224 NLQKKLSVLEEELKKANALKP--TPKQVESEVAKMKELSEKVKSLESALQRTKEEQLR 279
                      5999*****************..*****************************987655 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.00096
  Snapin_Pallidin  25 lrqsQeeLl.eqldrlnekLkeleeaqe.aevlpdlkeyakKLvnikkrmsslnerlqklkkR 85 
                       +++Q  Ll +++++l  +L++++e+q    +l+ +    + L+n+k +m++++e++ +l k+
       CCG91398.1 289 AKANQIVLLeQRVQKLEGELAQAREEQYrLTQLNPALIDYQQLNNLKEHMQKIEEQMAELSKK 351
                      567787665167****************87777777788899****************99986 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.0079
  Snapin_Pallidin   8 lellepkldeldeklkelrqsQeeLleqldrlnekLkeleea 49 
                      +e l++ +++l+++l++ r+  e+Ll++++++n  L++  ++
       CCG91398.1 368 MEALKSRVNKLEAELAQSRKREEQLLSSVSNQNVTLQKRVKE 409
                      5779999***************************99864333 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.73   4.3e+03      32      51 ..      92     111 ..      65     113 .. 0.55
   2 ?   11.8   9.9   3.8e-05      0.23       9      57 ..     128     177 ..     122     184 .. 0.89
   3 ?   14.1   8.2   7.1e-06     0.043       6      60 ..     184     239 ..     179     242 .. 0.90
   4 ?    7.2   7.3     0.001       6.2       9      62 ..     221     275 ..     217     282 .. 0.87
   5 ?    3.3   9.8     0.017     1e+02      13      60 ..     297     348 ..     281     353 .. 0.71
   6 ?    4.0   9.8      0.01        61       9      58 ..     330     383 ..     314     384 .. 0.70
   7 ?    5.9   7.0    0.0025        15       8      58 ..     366     415 ..     356     418 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.73
  ABC_tran_CTD  32 adpelysdp..eklaelsaele 51 
                    d  l  ++  ek +e++++l+
    CCG91398.1  92 VDYRL--KYvqEKASEVQNRLA 111
                   44442..222366777777765 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.8e-05
  ABC_tran_CTD   9 eleeleaeIeaLEeeiaeleaeladpelysdp.eklaelsaeleeleaeL 57 
                   e ++le++++++E+++a+le+  + p+  s +  + +el++  ++l++eL
    CCG91398.1 128 ESKALENRLAEIEAKLAKLEQSKSLPASESEQnREAQELQNLFQNLQKEL 177
                   7789***********************88777788*************99 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 7.1e-06
  ABC_tran_CTD   6 eqreleeleaeIeaLEeeiaeleaeladpelysdp.eklaelsaeleeleaeLeel 60 
                    ++++e+ e++I+ L  + a+l++ela +   ++  +++  l+++l  le+eL+++
    CCG91398.1 184 RKKQMEAQEEKINVLSSQVASLQKELAVAKSQNRNeTEVLNLQKKLSVLEEELKKA 239
                   689999*********************99988444599***************986 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.001
  ABC_tran_CTD   9 eleeleaeIeaLEeeiaeleaeladpelysdp.eklaelsaeleeleaeLeelye 62 
                   e  +l +++  LEee+++ +a    p   + + +k++els++ + le++L++  e
    CCG91398.1 221 EVLNLQKKLSVLEEELKKANALKPTPKQVESEvAKMKELSEKVKSLESALQRTKE 275
                   455899****************999*9996556****************998655 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.017
  ABC_tran_CTD  13 leaeIeaLEeeiaelea......eladpelysdpeklaelsaeleeleaeLeel 60 
                   le++ ++LE e+a+  +      +l +p+l  d+++l+ l + ++++e++ +el
    CCG91398.1 297 LEQRVQKLEGELAQAREeqyrltQL-NPAL-IDYQQLNNLKEHMQKIEEQMAEL 348
                   5666666666666655544433223.4776.599****************9997 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.01
  ABC_tran_CTD   9 eleeleaeIeaLEeeiaelea.....eladpelysdpeklaelsaeleeleaeLe 58 
                   +l +l ++++++Ee++ael +     +l+  + +++ +++ +l  + ++leaeL+
    CCG91398.1 330 QLNNLKEHMQKIEEQMAELSKkgelkRLQTRT-TENATEMEALKSRVNKLEAELA 383
                   57788888888888888888844332233222.2344778888888888888876 PP

  == domain 7  score: 5.9 bits;  conditional E-value: 0.0025
  ABC_tran_CTD   8 releeleaeIeaLEeeiaeleaeladpelysdp.eklaelsaeleeleaeLe 58 
                    e+e+l ++ ++LE+e+a+  ++ ++    s   ++   l+++ +ele+eL+
    CCG91398.1 366 TEMEALKSRVNKLEAELAQSRKREEQL--LSSVsNQNVTLQKRVKELEQELA 415
                   588888888888888888877765533..33333777888888999999886 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   5.8   2.8e-05      0.17      35     108 ..     131     209 ..     105     212 .. 0.80
   2 ?   -0.6   5.7       0.2   1.2e+03      42      90 ..     224     285 ..     210     311 .. 0.45
   3 ?    6.6   9.2    0.0012       7.3      31     116 ..     329     411 ..     289     426 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.8e-05
  Baculo_PEP_C  35 qlatlldaietqLnalsedlksllaeldt............rldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNinstL 108
                   +l++ l++ie +L +l+++ +                    +l++l++nL++ l +++ + ++++++ + +++ L s+v+ +++ L
    CCG91398.1 131 ALENRLAEIEAKLAKLEQSKS-------LpaseseqnreaqELQNLFQNLQKELIQVKMARKKQMEAQEEKINVLSSQVASLQKEL 209
                   455566666666666555333.......2334445588999***************************************998876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.2
  Baculo_PEP_C  42 aietqLnalsedlksllaeldt.............rldtlltnLtdalnalq.dtlrneLtnl 90 
                   +++++L+ l+e+lk++ a  +              +l++ ++ L++al++ + ++lr   +n+
    CCG91398.1 224 NLQKKLSVLEEELKKANAL-KPtpkqvesevakmkELSEKVKSLESALQRTKeEQLRITQNNI 285
                   3333333333333332111.1123333334442223333333333333333333444333333 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0012
  Baculo_PEP_C  31 qilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNinstLnnllqaln 116
                   q l++l++ +++ie+q+ +ls+  k  l+ l+tr ++++t++++   +++ +l+ eL    +   +Llssv N n tL+  ++ l+
    CCG91398.1 329 QQLNNLKEHMQKIEEQMAELSK--KGELKRLQTRTTENATEMEALKSRVN-KLEAELAQSRKREEQLLSSVSNQNVTLQKRVKELE 411
                   3336666666666666666666..23334444444444444444444444.78899999999999************998776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4045  (0.225612); expected 358.6 (0.02)
Passed bias filter:                      680  (0.0379274); expected 358.6 (0.02)
Passed Vit filter:                       202  (0.0112667); expected 17.9 (0.001)
Passed Fwd filter:                       101  (0.00563333); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.11u 0.37s 00:00:02.48 Elapsed: 00:00:00.62
# Mc/sec: 2501.48
//
Query:       CCG91399.1  [L=268]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.038   13.7   0.4      0.058   13.1   0.4    1.2  1  EIIBC-GUT_N  Sorbitol phosphotransferase enzyme II N-terminus


Domain annotation for each model (and alignments):
>> EIIBC-GUT_N  Sorbitol phosphotransferase enzyme II N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   3.2e-06     0.058      93     142 ..     213     262 ..     209     268 .] 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.2e-06
  EIIBC-GUT_N  93 ksGPLakyitediyvSgvkeeqieladeeeeeeeeeeeekeeaeekekkk 142
                  + GP  ky++e i  S++k++++e   +++e++++ +++++++++++++ 
   CCG91399.1 213 PQGPWLKYLEEAILYSAIKKREMERRANKSEQKRKGKNQSNRKKQSQRER 262
                  67*********************999666666666555555555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1570  (0.0875676); expected 358.6 (0.02)
Passed bias filter:                      791  (0.0441185); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 1974.63
//
Query:       CCG91400.1  [L=260]
Description: Alpha/beta superfamily hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-23   84.2   0.1    4.4e-22   79.0   0.1    2.0  1  Abhydrolase_1    alpha/beta hydrolase fold
    9.5e-19   68.9   0.0    1.1e-18   68.6   0.0    1.0  1  Abhydrolase_6    Alpha/beta hydrolase family
    2.6e-08   33.4   0.0    2.8e-08   33.3   0.0    1.2  1  Hydrolase_4      Serine aminopeptidase, S33
    1.6e-07   31.3   0.4     0.0015   18.3   0.0    2.2  2  PGAP1            PGAP1-like protein
    3.9e-06   25.8   0.0    3.9e-05   22.5   0.0    2.0  1  Ndr              Ndr family
    8.1e-06   26.1   0.0    1.5e-05   25.2   0.0    1.5  2  Thioesterase     Thioesterase domain
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.019   14.8   0.0    1.4  1  Lipase_3         Lipase (class 3)
      0.039   13.8   0.0      0.047   13.5   0.0    1.2  1  Palm_thioest     Palmitoyl protein thioesterase
      0.044   13.9   0.1      0.071   13.2   0.1    1.4  1  GWT1             GWT1
      0.045   13.3   0.0        0.1   12.2   0.0    1.6  1  Abhydro_lipase   Partial alpha/beta-hydrolase lipase region
      0.058   13.3   0.0      0.096   12.6   0.0    1.4  1  BAAT_C           BAAT / Acyl-CoA thioester hydrolase C termin
      0.063   12.3   0.0      0.093   11.7   0.0    1.2  1  Chlorophyllase   Chlorophyllase
      0.072   12.6   0.1       0.23   10.9   0.1    1.9  1  DUF676           Putative serine esterase (DUF676)
       0.11   12.1   0.0       0.24   11.0   0.0    1.5  2  Esterase         Putative esterase
       0.14   11.0   0.0       0.22   10.4   0.0    1.2  1  Chlorophyllase2  Chlorophyllase enzyme


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.1   3.7e-25   4.4e-22       2     257 .]      14     245 ..      13     245 .. 0.93

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 3.7e-25
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                     + ++hGl g+s +wa   +a+ L+k  ++v+ +Dlr++g+S+ ++     dy +  +a+d+++  ++  + +++l+GhS+GG +a+ +a+ +p+ 
     CCG91400.1  14 NVFLFHGLYGNSLNWAS--IAQSLSK-FYQVFSFDLRNHGHSPSSSF---MDYFL--MAEDIRQTAEPMELFPVHLIGHSLGGKLAMVFALSFPQW 101
                    6899*************..*******.***************99999...68888..*************************************** PP

                    EEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHHH CS
  Abhydrolase_1  98 Vkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieqwp 193
                    V++lv ++    + ++++++    +++ ++++    ++ +++    +   l++++  + +++ l   +   + ++  ++++  + + +++ ++ +p
     CCG91400.1 102 VSSLVVVDI--APVDYGKEAVEEHFKMLEAMRSLPLADLKKRKEAEV-LLLKTINNKTLVQFLL--TNLIYQSERYVWRINLEGIRASIEKLNAFP 192
                    *********..999999999999999999999999999998888766.7889999999999999..99999999999******************* PP

                    HCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 194 ttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlaflegp 257
                    +++                 tl+i+g+  ++   +++ +l   +pk++lv+i dagH++++e+p
     CCG91400.1 193 ALHACFPG-----------RTLFIAGERSNYLEASSIHQLSFYFPKATLVKIRDAGHWVHFEKP 245
                    99995544...........8*****************************************986 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   9.3e-22   1.1e-18       1     219 [.      15     250 ..      15     251 .. 0.65

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 9.3e-22
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH....CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC...... CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldled....ladlaalldelaagggpvvlvGHSlGGalalaaapla.....l 87 
                    v+l HG+ +++  W+  ++a  l++ ++v+++Dl++hG  ++p  ++ d    ++d++++++       pv+l+GHSlGG la+     a      
     CCG91400.1  15 VFLFHGLYGNSLNWA--SIAQSLSKFYQVFSFDLRNHG--HSPSSSFMDyflmAEDIRQTAEPME--LFPVHLIGHSLGGKLAMV---FAlsfpqW 101
                    6788**********9..999999***************..6677777664444488877777775..7789*********99999...66666897 PP

                    .EE.EEES-..----TTT......S----TTHHHHHHTT-C.......CCCHCCH...............S-HSCCCCHHHCCCCHCHCCCGHHHH CS
  Abhydrolase_6  88 vvg.vlldppptalpagl......laaalelllallallrl.......lawlsre...............plprlfladedadaawrarlarlaal 154
                    v++ v++d     +p ++          +++l+a ++l  +       +     e               +l+ l++  e   + wr +l + +a+
     CCG91400.1 102 VSSlVVVDI----APVDYgkeaveE--HFKMLEAMRSLPLAdlkkrkeA-----EvlllktinnktlvqfLLTNLIYQSER--YVWRINLEGIRAS 184
                    677433333....333332114331..2222222222111111222221.....033333444565555556668888777..************* PP

                    CCHHCHTTCCHHTT-TTGC.EEE.CTT-CHHH.HCHHCCCH.STTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 155 laglgllpaaawadlpvpl.lvl.ggeDplvp.rllerlla.qagarlpvvlpgaGHlphleepdevae 219
                      +l ++p  a+ ++ +   l + g++   +    + +l    ++a+l v +++aGH++h+e+p+e+ e
     CCG91400.1 185 IEKLNAFP--ALHACFPGRtLFIaGERSNYLEaSSIHQLSFyFPKATL-VKIRDAGHWVHFEKPKEFLE 250
                    *****887..666665555333336666655503344444499*****.***************99866 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   2.4e-11   2.8e-08       7     115 ..      15     118 ..      13     245 .. 0.70

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 2.4e-11
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvagl 104
                  v+l+HGl   s   a +a+ L +  ++v+ +D r hG+s+     + ++  + +D+++  e ++      p+ l+GhS+GG +a+ ++l  p+ v+ l
   CCG91400.1  15 VFLFHGLYGNSLNWASIAQSLSKF-YQVFSFDLRNHGHSPSS--SFMDYFLMAEDIRQTAEPME----LFPVHLIGHSLGGKLAMVFALSFPQWVSSL 105
                  99*******************987.**************533..35788899999988865555....55***********************88887 PP

  Hydrolase_4 105 ils..aPalkika 115
                  +++  aP+   k+
   CCG91400.1 106 VVVdiAPVDYGKE 118
                  7752266544444 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00016      0.19       3      51 ..      11      63 ..       9      77 .. 0.77
   2 !   18.3   0.0   1.2e-06    0.0015      93     160 ..      79     143 ..      68     173 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
       PGAP1  3 sGipVlFvpGnagsykqvrslAseaaeayqelrkllknqnkke....ldfftv 51
                +G  V + +G+ g+  ++ s+A+  ++ yq  + +l+n+ ++     +d+f +
  CCG91400.1 11 GGPNVFLFHGLYGNSLNWASIAQSLSKFYQVFSFDLRNHGHSPsssfMDYFLM 63
                67889999**********************96666666554433344999966 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.2e-06
       PGAP1  93 viliGHSmGGivaraaltlknyikqsvntiltla.sPhalpplsfdkdilklyervnefwkkeleekek 160
                 v liGHS+GG++a  +++  +  +q v+++++++ +P+++   +++ +++k+ e++ + + + l+++++
  CCG91400.1  79 VHLIGHSLGGKLA--MVFALS-FPQWVSSLVVVDiAPVDYGKEAVE-EHFKMLEAMRSLPLADLKKRKE 143
                 89***********..666666.5999*****9999****9998887.6677777777777766666654 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   3.3e-08   3.9e-05      85     277 ..      63     257 ..      54     258 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.3e-08
                 HHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH.......TTTS-HH....HHHHHHHS-HHHHHH.. CS
         Ndr  85 ladqllavldhfklksviglGvgaGAyilarfalkhperveglvLinitskaagwvewakeKlsskllkkvgltdllk....dlllahkFgkeekse.. 177
                 +a+++ + ++ ++l  v  +G   G  + + fal++p+ v++lv ++i +   g      +  + + +++  l+dl k    ++ll +   +++  +  
  CCG91400.1  63 MAEDIRQTAEPMELFPVHLIGHSLGGKLAMVFALSFPQWVSSLVVVDIAPVDYGKEAVEEHFKMLEAMRSLPLADLKKrkeaEVLLLKTINNKTLVQfl 161
                 689999999999************************************996555322222211112333333333322111144444444444444434 PP

                 T-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-------TTSSSS-EEEEEETTSTTHHHHHHHHHHS-TTTEEEEEETT-TT-HHHH-HHHHHHHHHHHH CS
         Ndr 178 nsdlvreyrkllkerlnsknlelyleaynkRrdleierkklevkvllvvGdkspfvdevvevnskldkkkttllkvadsgglvleeqPdklaeslklfl 276
                  ++l+ +   +   r+n + ++  +e +n    l+   +    ++l + G++s ++++    + ++   k+tl+k+ d+g  v  e+P+  +e l+ fl
  CCG91400.1 162 LTNLIYQSE-RYVWRINLEGIRASIEKLNAFPALHACFP---GRTLFIAGERSNYLEASSIHQLSFYFPKATLVKIRDAGHWVHFEKPKEFLEVLIPFL 256
                 344442222.22233444444444444444444444333...6799*************99999*******************************9999 PP

                 H CS
         Ndr 277 k 277
                 k
  CCG91400.1 257 K 257
                 7 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.3e-08   1.5e-05       2      86 ..      14      97 ..      13     155 .. 0.81
   2 ?   -2.6   0.0       3.9   4.7e+03     125     154 ..     232     259 ..     217     260 .] 0.74

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.3e-08
                  EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST.SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHH CS
  Thioesterase  2 pLflfppagGsasvfrslasklsdpvvevlavqlpgre.rdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArq 86
                   +flf++  G++   +s+a++ls+   +v+   l+ ++ ++++   +   +a+ + ++ ++     P++l+GhSlGg lA+ +A  
    CCG91400.1 14 NVFLFHGLYGNSLNWASIAQSLSK-FYQVFSFDLRNHGhSPSSSFMDYFLMAEDIRQTAEPMELF-PVHLIGHSLGGKLAMVFALS 97
                  58**********************.6999999999996555555555555666665555555555.****************9975 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.9
                   HHCCTTHHHCCTTTHCCHHHHHHHHHHHHH CS
  Thioesterase 125 eltdlggtepeelledeellsellpalrad 154
                   +++d g+    ++++ +e+l+ l+p l+++
    CCG91400.1 232 KIRDAGHW--VHFEKPKEFLEVLIPFLKER 259
                   45555553..67888899999999988876 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.6e-05     0.019      52      86 ..      64      98 ..      27     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
                HHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHH CS
    Lipase_3 52 lkelkrllekypeysivvtGHSLGgalAlLaaldl 86
                 +++++  e  + + + + GHSLGg lA+++al +
  CCG91400.1 64 AEDIRQTAEPMELFPVHLIGHSLGGKLAMVFALSF 98
                5566666666666779999************9875 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.9e-05     0.047       2      80 ..      15      91 ..      14     164 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.9e-05
  Palm_thioest  2 vviwhGldsaesnmqklaeliekligtyvknveigeseaedrkasffgnlndqveavckk....lelangfhaiGfSQGglfl 80
                  v+++hGl  ++ n+ ++a++++k ++++   ++  ++      +s+f++    +e++ +     +     +h+iG+S Gg ++
    CCG91400.1 15 VFLFHGLYGNSLNWASIAQSLSKFYQVFSFDLR--NH--GHSPSSSFMDYFLMAEDIRQTaepmE--LFPVHLIGHSLGGKLA 91
                  89*****44444499*******97665544444..33..33556666666655566544444442..468**********987 PP

>> GWT1  GWT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     6e-05     0.071     114     144 ..     136     166 ..      90     167 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6e-05
        GWT1 114 eekerkekatstvleainrngLlvFLlaNll 144
                 ++ +++++a+  +l++in+++L+ FLl Nl+
  CCG91400.1 136 ADLKKRKEAEVLLLKTINNKTLVQFLLTNLI 166
                 45577889999******************96 PP

>> Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.4e-05       0.1      44      62 ..      12      30 ..       6      32 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.4e-05
  Abhydro_lipase 44 kpvVlLqHGLlasSevwvl 62
                    +p V+L HGL  +S +w +
      CCG91400.1 12 GPNVFLFHGLYGNSLNWAS 30
                    689**************75 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.1e-05     0.096       5     117 ..      60     184 ..      57     190 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.1e-05
                 HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS.SEEEEEEES--SB--SSEEEETTE.......EE----B-GGG-EE......-TTS-EE CS
      BAAT_C   5 YFeeainyllrhpkvkkdkigllGiSkGgelalllasflk.kisavvlingsavvvegklvykdes.....kvlpelklsmeklkv......nknglld 91 
                 YF  a ++ +  + ++   + l+G+S Gg+la++ a  ++  +s +v++  + v + +++v ++ +     + lp  +l+ +k  +       +n+ l+
  CCG91400.1  60 YFLMAEDIRQTAEPMELFPVHLIGHSLGGKLAMVFALSFPqWVSSLVVVDIAPVDYGKEAVEEHFKmleamRSLPLADLKKRKEAEvlllktINNKTLV 158
                 6666666666666666667889******************77999999888888887777766665666664444444433333334566667777777 PP

                 -TT-B--TTTGGGCCCB--GGG--SE CS
      BAAT_C  92 ivdvlallkeklaekalipvekakgp 117
                 +   ++l+++ + +  +i++e ++++
  CCG91400.1 159 QFLLTNLIYQSERYVWRINLEGIRAS 184
                 77777777777777777777777665 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.8e-05     0.093     121     157 ..      78     114 ..      57     127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.8e-05
  Chlorophyllase 121 klalvGhsrGGktafalalgysseltfsaliGvdPva 157
                      + l+Ghs GGk a+  al + + +    ++ + Pv+
      CCG91400.1  78 PVHLIGHSLGGKLAMVFALSFPQWVSSLVVVDIAPVD 114
                     57899*****************888888888889998 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00019      0.23       9      92 ..      16      90 ..      15     136 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
      DUF676  9 VlvHGlqgnsaDlelikeqlekikeklpeekieflmsennesktfkgidvlgerlaeevlevvkkkkdknkkiSfvghSlGgli 92
                 l HGl gns ++++i++ l+k    ++   + ++    + s +f +  +++e     ++++++  +     + ++ghSlGg  
  CCG91400.1 16 FLFHGLYGNSLNWASIAQSLSK---FYQVFSFDLRNHGHSPSSSFMDYFLMAE----DIRQTAEPMELF--PVHLIGHSLGGKL 90
                588*******************...4455578888888888888888888865....567777777776..5778999999844 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.4     4e+03      23      40 ..      11      28 ..       5      40 .. 0.68
   2 ?   11.0   0.0    0.0002      0.24     118     141 ..      80     103 ..      64     128 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.4
                TEEEEEEE--TTHHCCHH CS
    Esterase 23 kypvvylldGltgwdqnf 40
                + p v+l++Gl g++ n+
  CCG91400.1 11 GGPNVFLFHGLYGNSLNW 28
                678999999995544443 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0002
                 EEEEETHHHHHHHHHHHCSTTTCC CS
    Esterase 118 avaGqSmGGlgALilalkhpdrFg 141
                  ++G+S+GG  A++ al  p+  +
  CCG91400.1  80 HLIGHSLGGKLAMVFALSFPQWVS 103
                 689*****************8665 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00019      0.22      91     141 ..      78     127 ..      62     134 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00019
  Chlorophyllase2  91 klalsgHSrGgktafalalgkaktslkfsaligvd..PvagaskskqtepkiL 141
                       + l gHS Ggk a+  al   +    +s+l++vd  Pv++ +++ + + k+L
       CCG91400.1  78 PVHLIGHSLGGKLAMVFALSFPQ---WVSSLVVVDiaPVDYGKEAVEEHFKML 127
                      57899**************9999...666666655559999776666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 1796.84
//
Query:       CCG91401.1  [L=616]
Description: ABC-type multidrug transport system, ATPase and permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-33  116.4   0.0    2.5e-33  115.5   0.0    1.5  1  ABC_tran      ABC transporter
    5.1e-26   91.9   6.5    5.1e-26   91.9   6.5    1.5  2  ABC_membrane  ABC transporter transmembrane region
    1.7e-07   30.9   0.0    3.5e-07   29.9   0.0    1.5  1  SMC_N         RecF/RecN/SMC N terminal domain
     0.0029   17.5   0.0     0.0063   16.4   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.029   13.2   0.1        0.7    8.6   0.0    2.2  2  ABC_ATPase    Predicted ATPase of the ABC class
      0.057   12.7   0.0       0.12   11.7   0.0    1.4  1  Zeta_toxin    Zeta toxin
      0.068   13.4   0.1       0.99    9.7   0.2    2.8  2  AAA_22        AAA domain
      0.069   12.9   0.0       0.19   11.4   0.0    1.8  2  AAA_24        AAA domain
      0.099   12.4   0.2       0.48   10.2   0.2    2.1  1  DEAD          DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.0   1.2e-36   2.5e-33       1     137 []     386     535 ..     386     535 .. 0.89

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 1.2e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTC.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxx.. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdee.. 84 
                 lkn+s+ + +g+k++i G++GaGK+tL +ll + ++p +G+il+dg+dl++ ++e lr+ ++ ++q+  +f+++ ++en             e   +  
  CCG91401.1 386 LKNLSFIIPKGKKMGIAGRSGAGKTTLTSLLFRFYDPVSGSILIDGEDLRDLKIEDLRNMFSLVSQDVVIFNRS-IAENiavgksgasreeiE---Qaa 480
                 79************************************************************************.99999****995554442...123 PP

                 ....HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 ....iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                     ++++++kl + +  dt++++++ +LSgGq+qr+++ara+++++++l+lDE+t+
  CCG91401.1 481 klagAHEFIEKLPQGY--DTIIGERGVKLSGGQRQRLSIARAFIRNSPILILDEATS 535
                 3444666666666666..9************************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.4       4.3   8.6e+03     222     243 ..      22      43 ..      20      52 .. 0.72
   2 !   91.9   6.5   2.6e-29   5.1e-26      22     260 ..      79     311 ..      70     325 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.3
                   HHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 222 ianglligitqllgllsyalal 243
                   i++gl++g+++ +++ +y+++l
    CCG91401.1  22 ILAGLISGFLFGAFNGAYLFIL 43 
                   5667777777777777777765 PP

  == domain 2  score: 91.9 bits;  conditional E-value: 2.6e-29
                   HHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHH CS
  ABC_membrane  22 lgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgek 118
                   lgr+l++ ++  d++   +   +l+l l+++++++l ll sy+++ ++ +++ +l++ ++ k+++++m ff + ++G+l  r+ nd+  + d+++  
    CCG91401.1  79 LGRWLPKANEPLDWKR--ICGGILILPLIAIFRGLLRLLNSYFMTLAAAKIVADLQSAILSKLHSLSMDFFHKSTTGDLAIRILNDTKAFYDSVSVL 173
                   6777777777777777..888899999********************************************************************** PP

                   HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 119 lglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeakk 215
                   + ++  + +t++++l  + ++ w+lt+v + ++p +i+ ++ +ak+ ++++    ++    s+++ Eslsgi+++kaf+ e++ +e f ++ +e  k
    CCG91401.1 174 FTDVAKDPITIIAILFSCALIDWRLTIVAILLVPGCIVPAVTLAKKAREASMGIISYSVAQSNLLFESLSGIQVIKAFCLEKKNVETFRHQANELAK 270
                   ********************************************************999************************************** PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHH CS
  ABC_membrane 216 agikkaianglligitqllgllsyalalwfGttlvisgelsvgdl 260
                    + k+ ia   ++++++++++++ +l +++ +++     +s+ ++
    CCG91401.1 271 HAAKMSIAGTMVSPMIDVVASFALSLLILCVIWQN----ISIANM 311
                   **********************9999977666554....445554 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.8e-10   3.5e-07     109     210 ..     331     576 ..     250     583 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.8e-10
                 EEEEETTEEE-HHHHHHHHHCTT-STT........................................................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................................ RF
       SMC_N 109 seykingkevtkkevsellesagiske........................................................................ 135
                 s++ki++   + k +++ll +    +e                                                                        
  CCG91401.1 331 SNVKIQEGAYSAKRLTDLLDTPSTVQEkpdakaikafkkqiefqnvtfnyghetvlknlsfiipkgkkmgiagrsgagkttltsllfrfydpvsgsili 429
                 555555555555555555555444444466666666666666666666666666666666666666666666666666666666666666666666666 PP

                 ............................................................................CS-HHHHHHHHHHHHHHHHCCS- CS
                 ............................................................................xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 ............................................................................lLSgGektLvalaLlfAiqkvkp 158
                                                                                              LSgG+++ +++a       ++ 
  CCG91401.1 430 dgedlrdlkiedlrnmfslvsqdvvifnrsiaeniavgksgasreeieqaaklagahefieklpqgydtiigergvKLSGGQRQRLSIARA----FIRN 524
                 66666666666666666666669999999999999999999999999999999999999999999999*******9*******97776655....5899 PP

                 -SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 159 aplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvg 210
                 +p+ +lDe  + LD +  + v + + + +k   +++i++r  +l+++d+++ 
  CCG91401.1 525 SPILILDEATSSLDSHSESVVQQAIYQLEKGRTVLIIAHRLSTLADCDEILV 576
                 **********************************************999865 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.1e-06    0.0063      60     119 ..     356     416 ..     346     426 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.1e-06
                  -HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  60 eeeeeleelkeelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinal 119
                  +e+ +++++k+  ++++++ ++ +  +++ l++l+  + + k + ++G SG+GK+tL   l
   CCG91401.1 356 QEKPDAKAIKAFKKQIEFQNVTFNYGHETVLKNLSFIIPKgKKMGIAGRSGAGKTTLTSLL 416
                  4444789999999*************************8889***************9876 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.032        64     206     262 ..     353     414 ..     348     431 .. 0.81
   2 ?    8.6   0.0   0.00035       0.7     303     352 ..     486     536 ..     471     568 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.032
                 STTS-SB-TS--.-----GGGE.EEEEETTTEEEEEE..EE-SS.EEEEEE-TTSSHHHHHH CS
  ABC_ATPase 206 sgesdkPlkeav.pFesPesle.veielpngkkvsGm..gipkG.vtlIvGggfhGKsTLLe 262
                 s++++kP  +a+ +F+   +++ v+++  ++  ++ +   ipkG  + I+G+   GK+TL +
  CCG91401.1 353 STVQEKPDAKAIkAFKKQIEFQnVTFNYGHETVLKNLsfIIPKGkKMGIAGRSGAGKTTLTS 414
                 67889999866526999999988999999988888763269***8888***********965 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00035
                 TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 303 spFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsA 352
                   Fi++LP+g dt       + SG   q  +i++a  +++++l++DE ts 
  CCG91401.1 486 HEFIEKLPQGYDTIiGERGVKLSGGQRQRLSIARAFIRNSPILILDEATSS 536
                 68***********966677789*************************9985 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.8e-05      0.12      21      57 ..     401     437 ..     390     465 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.8e-05
  Zeta_toxin  21 lgGqpGAGKselaellkdelerqgnvvrldpDdlRel 57 
                 ++G +GAGK++l +ll +  ++ ++ + +d+ dlR l
  CCG91401.1 401 IAGRSGAGKTTLTSLLFRFYDPVSGSILIDGEDLRDL 437
                 79*********************************86 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         5     1e+04      52      70 ..      67      85 ..      52      95 .. 0.71
   2 ?    9.7   0.2    0.0005      0.99      10      36 ..     401     427 ..     396     568 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5
      AAA_22 52 sskdllrellralglelka 70
                  k +++++ ++lg+ l +
  CCG91401.1 67 PKKHFYQKVMEQLGRWLPK 85
                5688899999888876655 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0005
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakae 36 
                 + G sG+GKTtl   l++ +d ++   
  CCG91401.1 401 IAGRSGAGKTTLTSLLFRFYDPVSGSI 427
                 67****************998665444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       5.1     1e+04      38      64 ..     245     273 ..     239     276 .. 0.66
   2 ?   11.4   0.0   9.7e-05      0.19       2      33 ..     396     433 ..     395     500 .. 0.56

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 5.1
      AAA_24  38 ldadkfpdie..swedfldevvelaaela 64 
                 ++++k  ++e  ++e+f+++++ela++ a
  CCG91401.1 245 IQVIKAFCLEkkNVETFRHQANELAKHAA 273
                 45555444446688999999999988766 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 9.7e-05
      AAA_24   2 klkiliyGpsgiGKTtlakel......gpkplfidtek 33 
                 ++k+ i G sg+GKTtl + l          ++id e+
  CCG91401.1 396 GKKMGIAGRSGAGKTTLTSLLfrfydpVSGSILIDGED 433
                 789**************999855444433444445554 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00024      0.48      11     150 ..     393     553 ..     383     562 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00024
                 HHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET..TSSH..HHHHHHH..... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx..xxxxxxx..... RF
        DEAD  11 ilgggdvlvaaeTGsGKTlaflipvlqivyet......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig..gvaa..rdqlskl..... 94 
                 i +g+++ +a++ G+GKT+  ++     +y+        + +  + l +e +r +   + +++  f   i   ++  +g  g ++   +q +kl     
  CCG91401.1 393 IPKGKKMGIAGRSGAGKTTLTSLLFR--FYDPvsgsilIDGEDLRDLKIEDLRNMFSLVSQDVVIFNRSIA--ENIAVGksGASReeIEQAAKLagahe 487
                 44889999999999999999777665..5554555566345556677777777777777777766666644..22222221322211334444433332 PP

                 .....HTTCSEEEEEHHHHHHHHHCTSSH.....CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSH CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  95 .....dngvdivvgtpgrlddllstgkln.....lsqvrflVlDEadrlldqgfsdfinrilnqlp 150
                       +g+d ++g  g  ++  ++++l+     +++  +l+lDEa   ld+  +  +++ + ql+
  CCG91401.1 488 fieklPQGYDTIIGERGVKLSGGQRQRLSiarafIRNSPILILDEATSSLDSHSESVVQQAIYQLE 553
                 2221145566666666666655588888877888999999************99999999888884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.49
# Mc/sec: 3818.50
//
Query:       CCG91402.1  [L=280]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-39  133.7   0.0    4.1e-39  133.3   0.0    1.2  1  Ysc84     Las17-binding protein actin regulator


Domain annotation for each model (and alignments):
>> Ysc84  Las17-binding protein actin regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.0   2.3e-43   4.1e-39       2     127 ..     150     270 ..     149     271 .. 0.96

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 2.3e-43
       Ysc84   2 gvgaGfqiGvdiydcvlvlntkealeaftkktrvslGgdlsvaaGpvgaggeaeaaaaaklkapvysysksrGlyaGvsldgtviterkdaNaafYgek 100
                 g+g+GfqiGv  ++++lvlnt+ea+eaf+k++++++Gg++s++aGpvg+++ea +  +   +a++y+ys+s+G+++G+s++gt i+e +d+N+++Y+++
  CCG91402.1 150 GIGFGFQIGVNATEFILVLNTPEAVEAFAKGGNFNVGGSISATAGPVGRTAEAGV-MP---MAAIYTYSQSQGIFGGISIEGTAIVEAPDTNREYYHRD 244
                 89**************************************************996.44...69**********************************76 PP

       Ysc84 101 gvsveqILrgevpwpaaakeLlevlka 127
                  vs+++IL+g +++p++ak L+++l+a
  CCG91402.1 245 -VSPSEILSGAIKPPPGAKILIDALQA 270
                 .***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1861.25
//
Query:       CCG91403.1  [L=44]
Description: hypothetical protein MFUM_1020130 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 310.29
//
Query:       CCG91404.1  [L=231]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1691.86
//
Query:       CCG91405.1  [L=551]
Description: Multicopper oxidase family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-31  107.6  10.9      5e-23   81.4   6.7    4.2  3  Cu-oxidase_2  Multicopper oxidase
      1e-29  103.0   2.2    4.3e-26   91.3   0.1    3.5  3  Cu-oxidase_3  Multicopper oxidase
    4.8e-14   52.8   0.3    4.7e-06   26.8   0.0    3.0  3  Cu-oxidase    Multicopper oxidase
  ------ inclusion threshold ------
      0.015   14.8   0.2        1.1    8.8   0.1    2.4  2  SoxE          Sulfocyanin (SoxE) domain
      0.021   14.9   0.1      0.042   13.9   0.1    1.4  1  DUF4366       Domain of unknown function (DUF4366)
      0.059   13.5   0.0         12    6.1   0.0    2.3  2  DUF2057       Uncharacterized protein conserved in bacteria (


Domain annotation for each model (and alignments):
>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.6e-07   0.00077      29     136 ..      96     189 ..      63     190 .. 0.74
   2 !    4.7   0.0    0.0077        23      30     104 ..     240     305 ..     214     323 .. 0.66
   3 !   81.4   6.7   1.7e-26     5e-23      23     133 ..     440     550 ..     420     551 .] 0.78

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.6e-07
                   TTSSEEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEE.E-TTEEEEEEEES.S-EEEEEEESSH..HH CS
  Cu-oxidase_2  29 sentnvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvq.vppggwvairfkadnpGvwllHCHil..wH 122
                   s   + i +++g+ + ++++n t lp ++H HG++++    g                     t   vp+g+ +++  k d+pGv+ +H H    + 
    CCG91405.1  96 SVPGPFIYVNQGDEITLEFKNLTGLPSTIHHHGVRVDNRYDGV-----------------PDITQPvVPNGKSFTYKLKFDDPGVYWYHPHYRddYA 175
                   4566788999************************766543333.................33333316779999******************98677 PP

                   HHTT-EEEEEEECH CS
  Cu-oxidase_2 123 ldqGmalqfvvrpd 136
                   ++ G++++++v p+
    CCG91405.1 176 QELGLYGNYIVIPK 189
                   77899999988765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0077
                   TSSEEEEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEE CS
  Cu-oxidase_2  30 entnvitlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvair 104
                   + +++++++kgev++++++n++++ p  + + G + +++g ++g           +e+ +  d v + p+++ +++
    CCG91405.1 240 QVQPTFDVQKGEVIRFYLTNTSSVrPFRVFIPGLKIKLVGGDNGR----------VEREQFVDAVVIAPSERQIVE 305
                   456799***************998544456778888888777777..........333344444444444444444 PP

  == domain 3  score: 81.4 bits;  conditional E-value: 1.7e-26
                   E...ETC.CTTTSSEEEEEET..TEEEEEEEEE-SSS....-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES.S CS
  Cu-oxidase_2  23 t...nge.efsentnvitlpk..gevveiviqnntkl....pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkadn 109
                   t   ++  ++++n  +++ ++  g++v+i i n+       +HP+H+HG++f vl+ +  +           +n v++dt++v +g+ v i  ++ n
    CCG91405.1 440 TwqiTDLgTMKTNGAIMDWNYkkGDYVKIRIINDIHSlhpmQHPMHFHGNRFLVLAVNDVE----------ETNHVWKDTFMVGAGDVVDILLEMSN 526
                   23353333566666666666666**********776666669*************877776..........4799********************** PP

                   -EEEEEEESSHHHHHTT-EEEEEE CS
  Cu-oxidase_2 110 pGvwllHCHilwHldqGmalqfvv 133
                   pG w+lHCHil+Hl +Gm++ + v
    CCG91405.1 527 PGKWMLHCHILEHLHSGMMTMYSV 550
                   *******************98765 PP

>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.1   1.4e-29   4.3e-26      11     117 ..      84     189 ..      75     191 .. 0.91
   2 ?    4.2   0.0     0.014        43      11      57 ..     229     274 ..     221     286 .. 0.79
   3 !    5.4   0.2    0.0059        17      29      57 ..     458     490 ..     428     548 .. 0.88

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 1.4e-29
                   TEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-SSS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE--TT..HHH CS
  Cu-oxidase_3  11 ggterevitvNgqfpgptievregdtvvvnvtNkldentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhshlsl..qqa 105
                   g+ e +++++Ng++pgp i v++gd+++++++N    + +ih hG+++++   +DGvp +tq +++ g+sfty+++ ++  g +wYh+h+     q 
    CCG91405.1  84 GNAEIKMLGYNGSVPGPFIYVNQGDEITLEFKNLTGLPSTIHHHGVRVDNR--YDGVPDITQPVVPNGKSFTYKLKFDD-PGVYWYHPHYRDdyAQE 177
                   4455799********************************************..**************************.************65445 PP

                   TT-EEEEEEE-H CS
  Cu-oxidase_3 106 aGlaGaiiiedk 117
                    Gl+G +i+ +k
    CCG91405.1 178 LGLYGNYIVIPK 189
                   9******99776 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.014
                   TEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-S.SS-B-EEEET-- CS
  Cu-oxidase_3  11 ggterevitvNgqfpgptievregdtvvvnvtNkl.dentsihwhGlq 57 
                   g+   ++ ++Ngq+  pt++v++g+ ++  +tN    +++ + + Gl+
    CCG91405.1 229 GRY-GNTFLINGQV-QPTFDVQKGEVIRFYLTNTSsVRPFRVFIPGLK 274
                   545.678899**97.8*****************986666777666665 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0059
                   EEEETT-EEEEEEEE-S....SS-B-EEEET-- CS
  Cu-oxidase_3  29 ievregdtvvvnvtNkl....dentsihwhGlq 57 
                    + ++gd v+++++N +    + +  +h+hG +
    CCG91405.1 458 WNYKKGDYVKIRIINDIhslhPMQHPMHFHGNR 490
                   46899**********997656667889999965 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.83   2.5e+03     115     138 ..     149     171 ..     141     180 .. 0.76
   2 !   26.8   0.0   1.6e-09   4.7e-06      35     131 ..     231     314 ..     200     335 .. 0.81
   3 !   22.5   0.0   3.3e-08   9.9e-05      54     147 ..     450     542 ..     382     550 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.83
                 TEEEEEEEEE-SSSEEEEEEEEGS CS
  Cu-oxidase 115 GqrysvlvtanqapgnYwivasgr 138
                 G +++  +++++ pg Yw++ ++r
  CCG91405.1 149 GKSFTYKLKFDD-PGVYWYHPHYR 171
                 667777788886.*****987544 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 1.6e-09
                 --SEEEETTBSS.......CTTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEETCETTS.EEEESCEEE-TTEEEEEEEEE-SSSEEE CS
  Cu-oxidase  35 vpdavlingkggfnatladkdgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvevDgvyve.pvevdsldIavGqrysvlvtanqapgnY 131
                   +++ling             +  +t++v++g+ +r+++ n+s    + ++I+G k+++v +D   ve +  vd + Ia+ +r  v v +   +g++
  CCG91405.1 231 YGNTFLING-------------QVQPTFDVQKGEVIRFYLTNTSSVRPFRVFIPGLKIKLVGGDNGRVErEQFVDAVVIAPSERQIVEVFFPS-TGEF 314
                 466778888.............2369******************************************99999********999777666654.5555 PP

  == domain 3  score: 22.5 bits;  conditional E-value: 3.3e-08
                 CTTTTSGGGEEEEETTEEEEEEE..ESS.S-BEEEEETSB-EEEEEE.TCETTSEEEESCEEE-TTEEEEEEEEE-SSSEEEEEEEEGSSSCHHHHTT CS
  Cu-oxidase  54 kdgaslatltvepgktyrlriin..vsa.ddslnfsIeGHkltVvev.DgvyvepvevdsldIavGqrysvlvtanqapgnYwivasgrsnlieafen 147
                 k++ +   ++ ++g+ +++riin   s+   ++++ ++G ++ V +v D + +++v  d++++++G  +++l+++++ pg+++++++      e+ + 
  CCG91405.1 450 KTNGAIMDWNYKKGDYVKIRIINdiHSLhPMQHPMHFHGNRFLVLAVnDVEETNHVWKDTFMVGAGDVVDILLEMSN-PGKWMLHCH----ILEHLHS 542
                 26778899**************7322331458999*****************************************8.********3....3444444 PP

>> SoxE  Sulfocyanin (SoxE) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.017        50      27      61 ..      89     122 ..      78     143 .. 0.83
   2 ?    8.8   0.1   0.00036       1.1     101     134 ..     513     546 ..     493     550 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.017
        SoxE  27 nlfnfnGtsnGqlkiyiPagwsvlvklvneeslph 61 
                 +++ +nG   G + iy+  g +++++++n   lp 
  CCG91405.1  89 KMLGYNGSVPGPF-IYVNQGDEITLEFKNLTGLPS 122
                 5789***999986.9**************887764 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00036
        SoxE 101 ssGqsasGlledlsaGtywlacgilGhaesGmWv 134
                  +G+ +  lle   +G+++l c il h +sGm  
  CCG91405.1 513 GAGDVVDILLEMSNPGKWMLHCHILEHLHSGMMT 546
                 345555556666678*****************75 PP

>> DUF4366  Domain of unknown function (DUF4366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.4e-05     0.042     112     144 ..      13      45 ..       9      47 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
     DUF4366 112 pekksnnglllvvlavaligggaayyfkvlkpk 144
                  + k++ +  +v+++v+liggg ++ fk  kpk
  CCG91405.1  13 TKGKTKLSYFVVLILVVLIGGGVFFWFKGAKPK 45 
                 445567899999********************9 PP

>> DUF2057  Uncharacterized protein conserved in bacteria (DUF2057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0039        12      64     112 ..     242     290 ..     230     294 .. 0.92
   2 ?    4.9   0.0    0.0089        27      33      92 ..     337     394 ..     324     399 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0039
     DUF2057  64 ivtfdakadqeltlelpklenerqakafakspkitltdksgksveakqd 112
                 + tfd+++++++++ l + ++ r  + f+   ki+l+  ++ +ve +q+
  CCG91405.1 242 QPTFDVQKGEVIRFYLTNTSSVRPFRVFIPGLKIKLVGGDNGRVEREQF 290
                 569************************************9999999887 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0089
     DUF2057  33 pGkhqivvrykdlfkddsdsdsqdlvkS.dplivtfdakadqeltlelpklenerqakafa 92 
                  G++ ++v y++ f ++ + +++++++  +pl+++ +  a  + t++l    ++++a +f 
  CCG91405.1 337 VGEQPVAVSYEKEF-QQLR-ENKEVIQEiEPLVAKYKS-ARPDRTIRLSVAVSKKEASRFS 394
                 69999*********.8888.555677666********5.5567777777777788888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3765.65
//
Query:       CCG91406.1  [L=132]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1717  (0.0957666); expected 358.6 (0.02)
Passed bias filter:                      947  (0.0528195); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 880.10
//
Query:       CCG91407.1  [L=155]
Description: Predicted metal transporter [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-21   75.8   0.0    1.4e-20   74.2   0.0    1.6  1  DUF3347   Protein of unknown function (DUF3347)


Domain annotation for each model (and alignments):
>> DUF3347  Protein of unknown function (DUF3347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.0   8.1e-25   1.4e-20      50     185 ..      31     151 ..      23     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 8.1e-25
     DUF3347  50 lkevlesYlklkdALvaddakeakkaakkleeklkavdtsklkekekkelkeiseelkekaekiaeskdieeqReaFkklsedliklvkafglkekalY 148
                 l++ l++Y+k+ ++L +d  k + +aak+l++ +++            + +   e l  k++++  +kd+++ R aFk++s+ li ++++ ++k+++ +
  CCG91407.1  31 LDSALQEYFKIGKSLSDDSLKGVPEAAKSLKNIVQNN-----------TPSLFPEGLLGKVDTLIGAKDLDSARLAFKDISDVLIGVLRSKQIKTGKYF 118
                 66789*************************9999998...........34456788999999999999******************************* PP

     DUF3347 149 vqfCPmannnkGayWlseekeikNPYfGdkMlkCGev 185
                 v  CPma+    a+W+  +ke+kNPY+G++Ml CG+v
  CCG91407.1 119 VLTCPMAQ----ASWIQPDKEVKNPYYGSAMLLCGDV 151
                 *******9....6**********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1146.24
//
Query:       CCG91408.1  [L=232]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1721.33
//
Query:       CCG91409.1  [L=173]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-21   75.4   2.0    4.8e-21   75.0   2.0    1.1  1  DUF1318   Protein of unknown function (DUF1318)


Domain annotation for each model (and alignments):
>> DUF1318  Protein of unknown function (DUF1318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   2.0   2.7e-25   4.8e-21       6      92 .]      82     173 .]      78     173 .] 0.94

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 2.7e-25
     DUF1318   6 lkldeakaqGlvGetadGylgvvkaa.aaeara....lvkaiNakRkavYteiAaknglsleevaklaaekliekaksGeyvqeanGkWvkK 92 
                  +++++k++ ++Ge+++Gyl+++++  ++++r+    +v+++N++R+++Y + A+ ++ +lee++k +a+k+ e + +Gey+q+ nGkW++K
  CCG91409.1  82 GEVQSLKNARVIGENREGYLEIINPPkEENYRNwakkVVAEENEDRTQLYLTQAKIQAKPLEEIEKEYAKKWQEMSFPGEYIQQDNGKWIQK 173
                 57999*******************9976776668888******************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1191.26
//
Query:       CCG91410.1  [L=590]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3794.03
//
Query:       CCG91411.1  [L=186]
Description: Integral membrane protein CcmA involved in cell shape determination [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-24   85.5   0.7    3.1e-24   85.1   0.7    1.1  1  Bactofilin  Polymer-forming cytoskeletal


Domain annotation for each model (and alignments):
>> Bactofilin  Polymer-forming cytoskeletal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.7   1.7e-28   3.1e-24       1      97 [.      22     119 ..      22     120 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 1.7e-28
  Bactofilin   1 tligegtkikGelevegdlridGkveGdi.eakgklvvgeggkvegnikaeevvvaGtvkGnveaeekvelkktakveGdikaksleieegavfeGkl 97 
                 t+++++++++G++ ++g+l+++Gk+eGdi +++g l +g+++ v+++ika++++v+G+v+Gn+ a+e++el +t+kv Gdik++sl ie+ga f Gk+
  CCG91411.1  22 TILDQHSEFQGSVGFSGELQLNGKLEGDIhSEDGVLLIGSTAIVKAEIKAKTIIVRGQVEGNLFAKERLELLNTSKVFGDIKTASLLIEPGAIFVGKS 119
                 6899*************************55599**************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1262.72
//
Query:       CCG91412.1  [L=331]
Description: Aspartate-semialdehyde dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-44  149.9   0.0    1.1e-43  149.4   0.0    1.2  1  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
    2.9e-32  111.6   0.2    6.7e-32  110.5   0.0    1.7  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
  ------ inclusion threshold ------
       0.13   12.4   0.0        0.3   11.2   0.0    1.7  1  DapB_N           Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   0.0   1.9e-47   1.1e-43       1     184 []     137     317 ..     137     317 .. 0.97

  Alignments for each domain:
  == domain 1  score: 149.4 bits;  conditional E-value: 1.9e-47
                      HHHHHHCTT.EEEEEEEEEEEGGGCHHHHHHHHHHHHHHHHHSTTS.CTTTSSHHTTSEESTCSTBTTTTCHCBHHHHHHHHHHHHHCTESC.S CS
  Semialdhyde_dhC   1 LkPLldalgelervivatyqavSGaGkkgvreLlkqvaelqrsdeakpgvfgvpiagNlipyidkeedkgepetreelkavaetkkilefte.k 93 
                      L P+++ ++ +erviv+tyqavSGaG+k++ eL +q  +   ++++ p+vf  +ia+N+  ++    ++g     ee k ++e +ki++ ++ +
       CCG91412.1 137 LWPIHK-VATIERVIVSTYQAVSGAGAKAILELETQLRHFVYGKPIVPEVFPEQIAFNVFSHNSPVAENG--FNGEENKVMQEIRKIFHYPTlN 227
                      569999.699************************************************************..99******************99 PP

                      EEEEEEEESBSSEEEEEEEEEESSSHHHHHHHHHHHHCSTTEEEEESS.HCHHSSHHHHTTCSSSEEEEEEEEETTCTTEEEEEEEEETTTT CS
  Semialdhyde_dhC  94 vsatcvrVPvlrGhseavtiklklkdveveeveellaaapevkvvvne.eedrPtpaavaggtnsvsVGRirkdemgdeglklvvvgDNllk 184
                      + atc rVPv+r hse+v i++ +k+ ++++ ++ l++ap+v vv+++ ++ +Ptp +++g +++v VGRir+d ++++g++++ +gD+llk
       CCG91412.1 228 ICATCIRVPVFRAHSESVVIET-AKKLDAQQTRNILSRAPGVLVVDDPqNGYFPTPIKASG-KKDVLVGRIREDLSHPRGIAFFLSGDQLLK 317
                      99********************.5************************88899*******9.7***************************97 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.0   1.1e-35   6.7e-32       1     120 [.       4     118 ..       4     119 .. 0.98
   2 ?   -3.8   0.0       2.9   1.7e+04     109     118 ..     181     190 ..     179     191 .. 0.86

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 1.1e-35
                     EEEEETTTSHHHHHHHHHHHC.TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEEE CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLee.hpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeagvkvi 94 
                     k++ivGatG+vG e ++lLee + ++++++l++ssrs Gk++ ++      g++l++ + ++ ++k++d+v+++++++vs+++a ++ e+g++vi
      CCG91412.1   4 KIGIVGATGAVGVEAIKLLEEsNLPISELRLFASSRSVGKTIGFL------GEELQIAELSSHAFKGLDFVIFSAGSSVSQQFASNAKESGAIVI 92 
                     79*******************************************......78****************************************** PP

                     ESSSTTTTSTTSEBE-HHHHGGGGGG CS
  Semialdhyde_dh  95 DlssdfRlkddavyvlpevnreaikk 120
                     D+ss fRl++d+++v+pevn+e++k+
      CCG91412.1  93 DNSSFFRLQPDVPLVVPEVNKEDLKS 118
                     ***********************986 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.9
                     E-HHHHGGGG CS
  Semialdhyde_dh 109 vlpevnreai 118
                     ++pev +e+i
      CCG91412.1 181 IVPEVFPEQI 190
                     699***9998 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     5e-05       0.3       2      60 ..       4      57 ..       3      96 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5e-05
                EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSS CS
      DapB_N  2 kvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtdd 60
                k+++vGa+G +G e +k++ee+ +l ++      +s+ +gk +g    +   ++++ + 
  CCG91412.1  4 KIGIVGATGAVGVEAIKLLEES-NLPISELRLFASSRSVGKTIG----FLGEELQIAEL 57
                9*******************95.333333322222223444444....33333444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2424.69
//
Query:       CCG91413.1  [L=728]
Description: Cation transport ATPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-53  181.1   2.5    1.4e-53  181.1   2.5    1.6  2  E1-E2_ATPase  E1-E2 ATPase
    1.1e-31  110.8   0.0    2.4e-31  109.7   0.0    1.6  1  Hydrolase     haloacid dehalogenase-like hydrolase
    4.1e-13   49.6   0.5      1e-12   48.3   0.5    1.7  1  HMA           Heavy-metal-associated domain
    3.2e-07   30.3   0.9    1.4e-06   28.3   0.3    2.0  2  Hydrolase_3   haloacid dehalogenase-like hydrolase
    3.7e-05   24.2   0.0    0.00017   22.0   0.0    2.0  1  HAD           haloacid dehalogenase-like hydrolase
     0.0026   17.8   0.2     0.0086   16.1   0.2    1.9  1  CrgA          Cell division protein CrgA
  ------ inclusion threshold ------
        0.2   11.0   8.4      0.014   14.8   1.8    2.2  2  DUF2162       Predicted transporter (DUF2162)


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         2   5.1e+03     124     150 ..      85     113 ..      50     145 .. 0.65
   2 !  181.1   2.5   5.6e-57   1.4e-53       2     179 ..     231     410 ..     230     412 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2
                   HHHHHHHHHHHHS-STTTSSTT..HHHHH CS
  E1-E2_ATPase 124 pvvlliallvflialllgksla..eallr 150
                   +++l+++ ++++ +++++ +++    +l+
    CCG91413.1  85 FLGLFLTTILYISQFTVRSPPFwlGNFLF 113
                   44555555555555555555544433333 PP

  == domain 2  score: 181.1 bits;  conditional E-value: 5.6e-57
                   SS--EEEEE.-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTT CS
  E1-E2_ATPase   2 llpptakvi.rdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgki 97 
                   l pp a+++  ++ e++++++ l +G  v+lk+g+r+p+Dg++++g+  vdes+LTGEs+pv+k  g++vf+Gt +++ +++++Vt  ge+t l++i
    CCG91413.1 231 LAPPYANLLlDNNVEKKVPVETLSVGQRVVLKPGERIPVDGEVIDGEGVVDESMLTGESRPVDKAPGKKVFAGTLNLNARLVIRVTSSGEKTVLAHI 327
                   78999999978889999******************************************************************************** PP

                   STTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  98 arlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.eallralallvaaiPcaLplavplalalgarrla 179
                   a++v +a+++++++q+++dk+++v+v++v++ia++++l + + gk+ + +al+ra ++lv+a+Pca++la+p a++++ +rla
    CCG91413.1 328 AEVVLKAQESRASIQNFVDKISSVFVIAVIAIAIITALGWGMSGKTKWeTALIRAASVLVVACPCAMGLATPAAIMVASNRLA 410
                   *******************************************999998999*****************************98 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   0.0   9.3e-35   2.4e-31       2     210 .]     429     637 ..     428     637 .. 0.83

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 9.3e-35
                 SEEEEESBTTTBCHHHHHHHHHHHH.CHHHHHHHHHH....HHCHHHHHHHHHHHHH.HHHHHHHHHETTTE........HHHHTHHHHHHHHHCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx....xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsa.alalaaaletg....sehpigkalvaaakar.sgaltgfatfigrg........ayaigkpewltaldippdl 86 
                 k v+fDk+GTLt+   s+   i    + + a al+++    s hpi +al++++k   +++l ++++ +g g         +  g++ wl++l     +
  CCG91413.1 429 KDVIFDKTGTLTEPVLSIGNPIYFFqDPSFADALAYSlcksSLHPISRALAEKCKSSqPFPLMQWQEKPGAGiqaiyedrIVRLGSVSWLKSL----GV 523
                 569*********77744444222224334444444445577****************************************************....33 PP

                 HHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES...STTTSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx RF
   Hydrolase  87 gaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdiet...vakpspegkvaa 182
                 +  +++ +s   +    + ++la + +  p  +kp a+ ++a+L a+g+ v++l+gd +e a++   ++G           i     +a++ pe k a+
  CCG91413.1 524 NGWDQQMNSSIGIGLSMDEKLLAFYPVYAP--IKPHAKAVIAKLLARGYTVYILSGDKKEIAMKFGIEIG-----------IPPeniIAEVRPEEKAAV 609
                 33333333333333333568**********..*******************************99999**...........555579************ PP

                 HHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 183 ireLqgkpeevamVGDgvnDaaalaaAg 210
                 ++++q+k++ +a++GDg+nDa+ala+A+
  CCG91413.1 610 VKRFQEKGKSIAFIGDGINDAPALAQAD 637
                 ***************************8 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.5     4e-16     1e-12       2      62 .]       5      64 ..       4      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 4e-16
         HMA  2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVeg....daestklrkiieaiekagyk 62
                +r++gm+C +C+++v+ +L  +p V s+ vdl+t++++V+     +     + +++ea+++agy+
  CCG91413.1  5 LRIEGMTCSNCVRHVRNALTQVPKVVSAHVDLETSRAVVNAeegcQ-----PTQLVEAVKSAGYE 64
                79**************************************954444.....466**********7 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.31     8e+02      16      47 ..     554     585 ..     552     599 .. 0.79
   2 !   28.3   0.3   5.3e-10   1.4e-06     195     245 ..     609     659 ..     606     663 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.31
                  --HHHHHHHHHHHHTTSEEEEE-SS-HHHHHH CS
  Hydrolase_3  16 isektkeaikklkekgikvviATGRslravlp 47 
                  i++++k++i+kl ++g++v i +G + + +++
   CCG91413.1 554 IKPHAKAVIAKLLARGYTVYILSGDKKEIAMK 585
                  678899***************99976655555 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 5.3e-10
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE-- CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtks 245
                  ++k+++ + + ++ +GDg ND + L +a+lg+A+ nas+ +k+ Ad v  +
   CCG91413.1 609 VVKRFQEKGKSIAFIGDGINDAPALAQADLGIAVLNASDIAKESADIVLLN 659
                  67888899999***********************************99866 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   6.7e-08   0.00017      80     187 ..     550     633 ..     539     634 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.7e-08
         HAD  80 virpklldpgalellaahraaGdrvvvvSgglrplvepllaelg..adevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevva 176
                 v++p  ++p+a++++a+ +a+G++v+++Sg  ++++  +  e g  +++++a+                  vr e+k+a++++  ++e+ +    ++ +
  CCG91413.1 550 VYAP--IKPHAKAVIAKLLARGYTVYILSGDKKEIAMKFGIEIGipPENIIAE------------------VRPEEKAAVVKR--FQEKGK----SIAF 622
                 4444..478*******************************8888555555555..................7889999*****..666644....3899 PP

         HAD 177 yGDspsDlpll 187
                 +GD+++D p+l
  CCG91413.1 623 IGDGINDAPAL 633
                 9********98 PP

>> CrgA  Cell division protein CrgA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   3.3e-06    0.0086      20      82 ..      67     143 ..      52     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.3e-06
        CrgA  20 tpvkakaakpsprwyvpvmlglmllGllwlvvyYlage...........eip...fmaelg.awNlliGfgliivGll 82 
                   v++++++ s+rw   ++lgl+l  +l++  + + +            +     +m++l  +wN++ G+ l++ +l 
  CCG91413.1  67 LMVEEDEEEASKRWTRSLFLGLFLTTILYISQFTVRSPpfwlgnflfslS-VpssWMTTLYvHWNFFFGLYLFVLALP 143
                 5566778999**************************99665555555551.0566****9879**********99885 PP

>> DUF2162  Predicted transporter (DUF2162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.7      0.29   7.5e+02     107     121 ..     106     120 ..      79     194 .. 0.60
   2 ?   14.8   1.8   5.6e-06     0.014      51     121 ..     339     406 ..     302     419 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.29
     DUF2162 107 vCltailfsiillas 121
                   l+ +lfs+ + +s
  CCG91413.1 106 FWLGNFLFSLSVPSS 120
                 334444455555444 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5.6e-06
     DUF2162  51 sldekllesllrygmvlhllmAlll.ialGlytlkkwkkskkdvssrtflalvlPCPvCltailfsiillas 121
                 ++ +++++++ +  ++  +++A++  +++G+    kw+    +   r++ +lv+ CP+ ++  +   i++as
  CCG91413.1 339 ASIQNFVDKISSVFVIAVIAIAIITaLGWGMSGKTKWE----TALIRAASVLVVACPCAMGLATPAAIMVAS 406
                 2225555555555555555566553378*********9....345677788899999999988877666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 5163.75
//
Query:       CCG91414.1  [L=219]
Description: Membrane-associated phospholipid phosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-24   84.7   3.7    6.2e-24   84.3   3.0    1.5  1  PAP2      PAP2 superfamily
    3.4e-09   36.7   4.6    5.7e-09   35.9   4.6    1.4  1  PAP2_3    PAP2 superfamily
     0.0075   16.8   4.5      0.023   15.2   4.5    1.9  1  PAP2_C    PAP2 superfamily C-terminal


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   3.0     1e-27   6.2e-24       6     134 ..      60     184 ..      52     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 1e-27
        PAP2   6 llalalaalltsvlKdlvgrpRPfflaeetkldtqvstletses.....keakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlva 99 
                   +l+ + l+   +K +v rpRPf++ ++ + +++  + + s+      ++ ++sfPSgH+a+ +a+a++++++++   +          l+l++++v+
  CCG91414.1  60 FSVLVGDRLIIDTIKEVVHRPRPFQVLPNVRVVEKSNQIYYSNPsrteeRARGRSFPSGHAANNTAAAVMATAVYGLPAIW---------LWLWVFMVS 149
                 22333344445667*******************997776666559****9**************************99999.........********* PP

        PAP2 100 lsRlylgvHflsDvlaGlliGialaalayrlvqkk 134
                 +sR+y gvH++sD+ aG++i+i+  + + ++ +++
  CCG91414.1 150 YSRIYMGVHYPSDICAGWIISIIYSYTFLYCLHWL 184
                 ************************99999988765 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   4.6   9.5e-13   5.7e-09      24     186 ..      15     172 ..       2     176 .. 0.58

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 9.5e-13
      PAP2_3  24 ahpalavilalaYaslhfqvtllvl..vllf.lrrrerlreflttlllatllgllvyalfPaa.gPrlleeagfvdtvaaaslagalrdgasravllrg 118
                 ++p+l++++ ++ +   f ++l++l   +l+  + rerl  +l+++ +++   l++ +   ++ +Pr +     + + ++  +++  +++ ++  + r+
  CCG91414.1  15 HTPWLDKLMPFISDLGNFRLPLWLLgiSILYfGKFRERLVVILVLFSVLVGDRLIIDTIKEVVhRPRPF-----QVLPNVRVVEK--SNQIYYSNPSRT 106
                 566666666666333333333322200222313333344444444444433344443333222134333.....33333333333..333333334444 PP

      PAP2_3 119 tienglaafPSlHvawallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvalalv 186
                   ++   +fPS H+a  +  a+++  +   +   + ++l+++++ ++ ++ g HY  D++aG+++ ++
  CCG91414.1 107 EERARGRSFPSGHAANNTAAAVMATAVYGLP--AIWLWLWVFMVSYSRIYMGVHYPSDICAGWIISII 172
                 44577789***************99999999..666778999999*******************9877 PP

>> PAP2_C  PAP2 superfamily C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   4.5   3.8e-06     0.023       8      69 ..     117     174 ..     114     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.8e-06
      PAP2_C   8 SGHtvvltlavlfileyspkklailkvillllallglfliiasrkHYtvDVllglyittlvf 69 
                 SGH+++ t a+++++ +         ++l+l++++ +++ i+   HY  D+  g++i+++  
  CCG91414.1 117 SGHAANNTAAAVMATAVYGLPA----IWLWLWVFMVSYSRIYMGVHYPSDICAGWIISIIYS 174
                 9999999988887777666554....899****************************98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1562.70
//
Query:       CCG91415.1  [L=406]
Description: Cytosine deaminase or related metal-dependent hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-35  120.7   0.0    2.6e-34  119.1   0.0    1.8  1  Amidohydro_1  Amidohydrolase family
    1.9e-13   50.7   0.0    2.8e-11   43.6   0.0    2.2  2  Amidohydro_3  Amidohydrolase family
  ------ inclusion threshold ------
       0.21   10.9   0.0        0.3   10.4   0.0    1.2  1  A_deaminase   Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.0   4.4e-38   2.6e-34       1     344 []      51     400 ..      51     400 .. 0.78

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 4.4e-38
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHH.TTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEESSEGGS........ CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalk.sGtttvadmgattstgiealleaaeelplglrilggkvsldr........ 88 
                   i++PG+I++H Hle +ll++        + + ++ a+  +++t ++   t +v+d+ +++s gi++ll++a  ++l++        + +        
    CCG91415.1  51 IIFPGFINSHCHLEYTLLKD--------KLSASKGAFVDWLQTIIRfKKTLSVIDYLKAHSMGIDLLLKSAITCVLDVVS------MPEiflfespy 133
                   79************998755........5777777777777777774456677777777777777777766664333221......21234444566 PP

                   .........GCCCSHHHHHHHHHHHHHHHHHHCTTTCEE.EEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETT CS
  Amidohydro_1  89 .........gsaetskasreklkagaaetikgkadgvvk.valapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgth 175
                              + ++  ++ + +ag   ++ + + +  + ++l ph+++++s+e+ +   + + +++  +++H++e+ +e+e+  ++ g       +
    CCG91415.1 134 plrvfsfleLIDVNRSYWTDEKLAGS--LLFFSNQSSSTaIGLSPHSPYTASPELYALSKRWCFQKNGLLMTHVAESYEEYEMFTQKKG---GLFDF 225
                   66777777744444455555555664..566666666667*************99999999***********************99999...55455 PP

                   TTSTCC................HHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCCGG CS
  Amidohydro_1 176 levaes................lglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvkvglgtDgaasgnsln 256
                    ++ e                   ll++ ++ l+h  +l+ t++ + k++  + +v+ cp+s    + + ++lr++l++Gv+v+lgtD+ as++sl+
    CCG91415.1 226 ISRIEPrsarfkkstplrylaeNELLTK-NAFLVHLNYLDETDWDWFKKN--SWNVVYCPKSHAFFGHDPFPLRQLLSRGVNVVLGTDSLASNDSLD 319
                   6666668889999999997666666666.7777777777799********..99******************************************* PP

                   HHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC....CTCGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 257 lleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl....dilaafvglkkdgnvkkvivkGklv 344
                   + +e+  a          ++   +s+ ++ +m+T n+Akalgl  k+G+i vG +ADlv++      d+l+a+  l +++++  vi++Gk+v
    CCG91415.1 320 MRKEIQKAQ---------QAFPEISIVDWWKMVTVNPAKALGLQGKLGEISVGAYADLVAIPFnsssDPLEAL--LYEQKEPSIVIINGKVV 400
                   *88877777.........56899**************************************556544334444..444558*********98 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0021        13       9      28 ..      51      65 ..      43      95 .. 0.76
   2 !   43.6   0.0   4.6e-15   2.8e-11     358     472 ..     293     400 ..     276     401 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0021
  Amidohydro_3  9 lvlPGFvDsHtHlagggvnl 28
                  + +PGF+ sH H     +++
    CCG91415.1 51 IIFPGFINSHCH-----LEY 65
                  679*********.....444 PP

  == domain 2  score: 43.6 bits;  conditional E-value: 4.6e-15
  Amidohydro_3 358 tpvkellnagvkvalgsDapvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdp 454
                   +p++ ll+ gv+v+lg+D       ++ +  +++mrk   ++   ++  e+s+ ++ +++T +pAkalgl+ + G + vGa+ADlv +  +    + 
    CCG91415.1 293 FPLRQLLSRGVNVVLGTD-------SLASNDSLDMRKEIQKA--QQAFPEISIVDWWKMVTVNPAKALGLQGKLGEISVGAYADLVAIPFNSSSDPL 380
                   89****************.......88888888998887665..566678***************************************66666666 PP

  Amidohydro_3 455 pelaear..vrltvvdGrvv 472
                   ++l +++  ++ ++++G+vv
    CCG91415.1 381 EALLYEQkePSIVIINGKVV 400
                   666666567999999*9998 PP

>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0     5e-05       0.3     253     305 ..     286     340 ..     268     357 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5e-05
                  ST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-S.HHHHHHHHHHHH.T--HHHHH CS
  A_deaminase 253 afleyaenPlkeflerglnvslntDDPlqfgtt.LieeYaiaaqvf.klseedla 305
                  af   +  Pl+++l+rg+nv l+tD  +  ++  + +e + a+q+f   s +d+ 
   CCG91415.1 286 AFFGHDPFPLRQLLSRGVNVVLGTDSLASNDSLdMRKEIQKAQQAFpEISIVDWW 340
                  55567788*****************98888766699******9999778877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2785.91
//
Query:       CCG91416.1  [L=392]
Description: 7-keto-8-aminopelargonate synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-58  196.3   0.0      1e-57  196.0   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
     0.0056   15.3   0.0     0.0084   14.7   0.0    1.3  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
       0.15   11.3   0.0       0.24   10.7   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.0   0.0   1.7e-61     1e-57       2     360 ..      46     383 ..      45     386 .. 0.94

  Alignments for each domain:
  == domain 1  score: 196.0 bits;  conditional E-value: 1.7e-61
                    EEEESSSSSTTSTTSSHHHHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgde 95 
                    ++in++sn+ylg+s++p ++e a+++++  ga+ + ++ ++g++ +   le+ala++ g        +e+a+++ +G++a+i ++++l    ++d 
     CCG91416.1  46 QIINFSSNDYLGLSRHPLVKEKAQQAIQeyGASCSASRLISGNNPLFSPLEKALAQWKG--------KEKALIFPTGYSAAIGTIPALVG--KSDL 131
                    68*******************99999999******************************........999*******************9..**** PP

                    EEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTT CS
  Aminotran_1_2  96 ilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYa 191
                    il++++ +as  +++rls+++++ +        h+d+++l++ l++ ++   ++ +i+ es+++++G++a+l+e+++l   +++y+ ll++D+a+a
     CCG91416.1 132 ILMDKLCHASLWDGARLSQATIRVFG-------HNDIQNLKQILDRYAAS-YEKILIISESIFSMDGDIAPLAEIVEL---KERYEGLLLLDDAHA 216
                    **************************.......************95544.44789999*******************...*************** PP

                    TCBSSSS..HTHHH.HGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH..HHHHHHHHHH CS
  Aminotran_1_2 192 gfvfgsl..davat.ranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqs..eleemrqrlq 282
                    ++  g++  +   + +++v+++++ +++g++sKa+G+ G   Gyi+++a +++++ +  r+f++s++l++   aa+  al +++  + +e r++l+
     CCG91416.1 217 EGIVGEEgnGL--AsCLKVMDKVD-VLMGTFSKALGSQG---GYIASTALLIDWVINKGRSFIFSTALSPSSIAAACSALNIIKseSGTELRKKLK 306
                    *****885333..25*********.**************...**************************************999999********** PP

                    HHHHHHHHHHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS...TTEEEEEC.TTS-HHHHHHHH CS
  Aminotran_1_2 283 krrkelrdeLaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftv...pgrlRitv.Aglteeeleelv 360
                    ++  ++ +e   ++   +   s ++++  +++++a ++s++L +  g+y+ p++++tv   ++rlRi++ A +++e++++l 
     CCG91416.1 307 DNLAYFMEES--PNSRLFF--SPIIPILIGEEAKAIQVSQELEKM-GIYLPPIRYPTVpkgTARLRISLtALHSTEQIDYLK 383
                    ********95..5555555..4799*****************999.*************9999****************985 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.4e-06    0.0084      50     175 ..      88     214 ..      64     223 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-06
                      --HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCT.....TE CS
  Cys_Met_Meta_PP  50 gnptrsvleeriaaLeggeaalavssGmaAiaaailallkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaike.....nt 138
                      +np  s le+++a+ +g e+al++++G +A   +i al+ + d i++++ ++ +  +     ++ ++ +++++  +d+++l++ ++      + 
       CCG91416.1  88 NNPLFSPLEKALAQWKGKEKALIFPTGYSAAIGTIPALVGKSDLILMDKLCHASLWDG----ARLSQATIRVFGHNDIQNLKQILDRyaasyEK 177
                      59999**************************************999988776543332....22222233333333333333333221112233 PP

                      EEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGT CS
  Cys_Met_Meta_PP 139 klvylEtptnpllkvvDiekiaklakkagvlvvvDnt 175
                       l+  E++ +   +++ +++i++l    + l+++D +
       CCG91416.1 178 ILIISESIFSMDGDIAPLAEIVELKERYEGLLLLDDA 214
                      3445567767666777777777766666666666665 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.9e-05      0.24      29     155 ..      87     203 ..      68     257 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.9e-05
                      T--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S- CS
  Beta_elim_lyase  29 gedktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevg 122
                      g+++ +  Le+a+a+  gke+al +p+G  A    + +l+ + + +++++ +h   +         g++l +++++  G  d+++l++++++  
       CCG91416.1  87 GNNPLFSPLEKALAQWKGKEKALIFPTGYSAAIGTIPALVGKSDLILMDKLCHASLWD--------GARLSQATIRVFGHNDIQNLKQILDRYA 172
                      89999**************************99999****888888888888877665........5666666666777779999999999977 PP

                      TTS-EEEEEEEESSBTTTTTB---HHHHHHHHH CS
  Beta_elim_lyase 123 aheekiklisltvTnntagGqvvsleelrevaa 155
                      a     k++++   + ++ G + +l+e+ e+++
       CCG91416.1 173 A--SYEKILIISESIFSMDGDIAPLAEIVELKE 203
                      7..444455555566666788888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2635.87
//
Query:       CCG91417.1  [L=464]
Description: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-96  322.2   0.0    4.8e-96  321.9   0.0    1.0  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.9   0.0  2.7e-100   4.8e-96      10     405 ..      32     455 ..      24     456 .. 0.95

  Alignments for each domain:
  == domain 1  score: 321.9 bits;  conditional E-value: 2.7e-100
                  CEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..S...EEEEESSHHHHHHHHH CS
  Aminotran_3  10 llvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgld...kvflansGseAvetAl 104
                  +lvi+kaeG+yl d   +r+ D  ssi+ +++Gh+hP+++ka+ + ++k+ hvsf   t++ a++l +kl  l+ +g     +vf+ ++Gs AvetA+
   CCG91417.1  32 PLVIDKAEGCYLFDRKKNRFWDGNSSIWTTTHGHRHPRIIKAILACLEKIDHVSFLGNTHQWAVNLGQKLSLLISQGSAnkyRVFFSDNGSTAVETAI 129
                  389*******************************************************************555555444477**************** PP

                  HHHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HH..........HHHHHHHHHHHHHH...CHT CS
  Aminotran_3 105 KlarkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkene..........eeeaalleeleale...kkk 189
                  K+a +  +++k++e+t ++ ++g++HG+t+ga+sv++   + ++ f+++l +  +l++p +++++ n+          e++ +  e+l al+   +k 
   CCG91417.1 130 KIAWQALKQRKEKERTLFLCLEGSYHGDTVGAMSVSSI--PFQSRFKELLFDSESLPAPSCFHCPWNKakssrgidarESKICSWECLDALKkaiEKN 225
                  ************************************99..****************************9******99877888889999999888999 PP

                  CCCEEEEEE-S.CETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TT CS
  Aminotran_3 190 kdevaAvivEp.iqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapg 285
                  k+ +aA+i+Ep iqg+ G+ ++++++l+++ +l+k+ ++++ivDEv +G+GrTG+l A ++ +v +D+++laK+l+gG lp++a+l ++e+ + ++ g
   CCG91417.1 226 KKRLAALIIEPkIQGASGMWMHPEGYLKEAFKLTKEAGAFFIVDEVFSGMGRTGHLIASHKEDVYADFICLAKGLSGGtLPIAATLIREEIFDDFKGG 323
                  ***********************************************************************************************999 PP

                  S.....B--TTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.........HHHHHHHHH CS
  Aminotran_3 286 s.....hgsTfgGnplacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.........keilkkake 369
                  +     hg+++++nplaca al+ l+i+eee+ l  +++++++lk+  + + +++  +++vR  G+++a+e+ +++++++         +++ +kak+
   CCG91417.1 324 YeeaflHGHSYTANPLACASALENLKIFEEENTLGWIKAISRQLKSSSTIFWQHP-LVGDVRVEGAVLAVEILKDKNENRlidsnldigWAVSEKAKD 420
                  8**********************************************99888777.*********************888****************** PP

                  CTEE-EEETTTEEEE---TT--HHHHHHHHHHHHHH CS
  Aminotran_3 370 kGvlilsaGdnvirllppliitdeeidelleilkka 405
                   G++++++  nv+ l+pp++ + e+i+ ++ +l ka
   CCG91417.1 421 YGLVTRPIK-NVLILVPPYCSSLEDIEGMVWALYKA 455
                  ********9.****************9998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2982.01
//
Query:       CCG91418.1  [L=503]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.7e-127  423.3  21.7   1.1e-126  423.1  21.7    1.0  1  Na_H_antiport_3  Putative Na+/H+ antiporter
    1.6e-10   40.9  10.6    5.9e-08   32.5   0.8    2.3  2  DUF1646          Protein of unknown function (DUF1646)


Domain annotation for each model (and alignments):
>> Na_H_antiport_3  Putative Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  423.1  21.7  1.3e-130  1.1e-126       2     418 ..      58     497 ..      57     498 .. 0.94

  Alignments for each domain:
  == domain 1  score: 423.1 bits;  conditional E-value: 1.3e-130
  Na_H_antiport_3   2 lelvaailfalAvvhtflaklferlahkl...............pkha.....ellhllgevevvFglWaivllvvlllvegleaaiayld.sr 74 
                      ++++a+ +f+lAv ht++++++ r  + l                         l+++lgeve++FglW+++ll+v l   g++a+++ l+ ++
       CCG91418.1  58 FDYIATGFFLLAVFHTLISPVLFRKGEALidyawqtsggkmtrsH--WlyffgVLVRYLGEVEIIFGLWLLPLLIVSLWRFGWDATLEKLKlKT 149
                      6789******************99999999999***999987540..256666899******************************99999899 PP

  Na_H_antiport_3  75 nfteplFvvvimvvassrPilelaekvvrvvakllplesalalllvvlivvpllgslitEpaamtiaallLakqlykkevseklkYatlglLfv 168
                      ++te+lFv v+m+++s++Pil+++++++ ++a+ + ++s++++++++l+++p+ gs+itE++a+ti+allLa++l+  +++++l+Yat+glLf 
       CCG91418.1 150 EYTEALFVAVLMTISSAQPILYISQRLIGCFAR-ITKDSVTSWWFLILTLGPIFGSFITEASAITISALLLAEKLFCLNPKQSLAYATIGLLFF 242
                      *********************************.************************************************************ PP

  Na_H_antiport_3 169 niSiggtltsfaappvlmvaekwkwdtafmlthfgwkaalailinalvvtllfrkelkelakkake.....keaeeekekvPllvvlvhlvflv 257
                      niSiggtlt++aappv++v +kw+wd+ +ml hfg+  a +i++++l+++++f++e+k+l+k+  +       ae+ +ek+P+++v+  + flv
       CCG91418.1 243 NISIGGTLTNYAAPPVVLVSQKWQWDSFYMLIHFGFVFACGIVLANLLYYFVFQEEFKRLEKERLSllaetGPAESLREKIPIWIVIGNIGFLV 336
                      *********************************************************99999865411000334445566************** PP

  Na_H_antiport_3 258 lvvlfahhpaifiglfllflgfteateeyqerlklkeallVgfFlaglvvlgglqewWlqpvlesleelalffgataltaitDnAaltyLasl. 350
                       +v+++ +  +++g++++fl+f++at+ yq ++ l++a+lVgfFla l v+g+lq+wW++ +l++l+ l l++ +++l++++DnA + yLa+l 
       CCG91418.1 337 STVIIKDYFLLLFGILVFFLSFVDATKPYQGEIPLQKAFLVGFFLASLEVFGNLQSWWINRLLSHLSFLPLYVVSVMLSSFNDNALISYLATLi 430
                      ********************************************************************************************84 PP

  Na_H_antiport_3 351 veglsdelkyalvagavagGGLTvianapNpagvailkkkfedegisplkLllaAllPtlvaalafll 418
                      v+ l++  k a++ ga++gGGLT+ianapN +g ++l+k+f+d gi  +kL+++Al+Pt+++a++f++
       CCG91418.1 431 VPELDEMKKRAIIGGALSGGGLTIIANAPNLVGWSLLRKFFPD-GIASTKLFIMALVPTILVAILFMF 497
                      69999999**********************************9.*******************99975 PP

>> DUF1646  Protein of unknown function (DUF1646)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   3.3   6.6e-06     0.059      52     209 ..     145     302 ..     116     363 .. 0.68
   2 !   32.5   0.8   6.6e-12   5.9e-08     226     319 ..     372     468 ..     359     497 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.6e-06
     DUF1646  52 lktplailevgaipigitqavllaGlvfellkkklksllaevldklalkvfv.fllivilGlassvisai.vaavilaeivallplerkekvklvvias 148
                 lk +  ++   a+ + +++++  a  ++++ ++ +  +   + d ++   f+ + l  i+G   +  sai ++a++lae + +l+ ++     ++ +  
  CCG91418.1 145 LKLKTEYT--EALFVAVLMTISSAQPILYISQRLIGCFARITKDSVTSWWFLiLTLGPIFGSFITEASAItISALLLAEKLFCLNPKQSLAYATIGLLF 241
                 55555554..4445555556666666676666666666666666665544330233345554333334443999*******999999999888999999 PP

     DUF1646 149 faiGlGaaltPvGePlstiavsklnedflylidvlgeyiiiavlvlallaalslkrlskre 209
                 f i +G +lt    P   ++ +k + d +y++   g     ++++  ll ++  +++ kr 
  CCG91418.1 242 FNISIGGTLTNYAAPPVVLVSQKWQWDSFYMLIHFGFVFACGIVLANLLYYFVFQEEFKRL 302
                 *************************999999988888888888888888777776665443 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 6.6e-12
     DUF1646 226 iravkvfvfilalellGegfkPlikayiaklkseilywvn.lisavvdnatla..aaeisPelteeqirailmsllisGGlliPGniPnivsaGklk 319
                  +a+ v  f+++le++G+     i+  +++l+   ly+v+ ++s+  dna ++  a+ i Pel e + rai+ + l  GGl+i  n Pn+v    l+
  CCG91418.1 372 QKAFLVGFFLASLEVFGNLQSWWINRLLSHLSFLPLYVVSvMLSSFNDNALISylATLIVPELDEMKKRAIIGGALSGGGLTIIANAPNLVGWSLLR 468
                 6899999********************************83579******7644499*********************************9766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3764.69
//
Query:       CCG91419.1  [L=432]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.3e-115  383.6   0.0   2.1e-113  378.7   0.0    2.0  1  DUF763         Protein of unknown function (DUF763)
    0.00039   19.8   0.0     0.0036   16.6   0.0    2.3  3  Amino_oxidase  Flavin containing amine oxidoreductase


Domain annotation for each model (and alignments):
>> DUF763  Protein of unknown function (DUF763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.7   0.0  2.3e-117  2.1e-113       2     312 .]      22     374 ..      21     374 .. 0.90

  Alignments for each domain:
  == domain 1  score: 378.7 bits;  conditional E-value: 2.3e-117
      DUF763   2 iadLpLhegkvPewllermkkLskaiveliveeygkeellerlsdPlwFqslgnvlGmdWdsSGsTtvvlgalkeal.kseelgilvaGGkGkksrktp 99 
                 +a LpLh+gk+P++l+erm++L++a+++liveeyg++e+l+rlsdP wFq++g+vlG+dW+sSG+Ttv +galkea  +  ++gi+vaGGkG +srktp
  CCG91419.1  22 TAYLPLHYGKAPSYLFERMVRLARAMTQLIVEEYGPDEMLRRLSDPWWFQAFGCVLGFDWHSSGLTTVCCGALKEAQkRYGDIGIFVAGGKGGESRKTP 120
                 589**************************************************************************8999****************** PP

      DUF763 100 eeleklaeklgldeek.lvkasrlvakvdnaalqdgyqlYlhalivsekgkwaviqQGmneeerlARRYhwlseelesfveephsgiagekkeeevl.. 195
                 ee+ ++a++l++++++ l+++srlvakvd+aalqdg+ lY+h ++++ +g+w+viqQGmne++r+ARRYhwl e++++fv +ph++i   ++e+e l  
  CCG91419.1 121 EEIARIADRLAINAAEsLIRTSRLVAKVDSAALQDGFALYHHCFFFTASGSWCVIQQGMNETTRYARRYHWLGESTKNFVCNPHAAIDDLSEENEGLls 219
                 ************99888**********************************************************************976666654423 PP

      DUF763 196 ..nlvskeseearkaildlvkekpekllkelkelkallkgekkl............klpakhev............lekvlekayelqpedfeellllk 268
                   ++ +k+++  ++++l++++ ++e+ +++++el++ +k +k+l              pa+h++            l+k++ +aye++p+df++ll ++
  CCG91419.1 220 esEINKKRQTPDKSILLNMIAGEAERSRQTCSELAR-EKPQKTLnliseilcgptlFAPARHTIsstdirlinlkaLHKAIVSAYERNPKDFQSLLETP 317
                 333445555556667777777777777777776643.3444444567777777777567777778888899999999********************** PP

      DUF763 269 gvGpktlraLalvaeliygekasfkDPv.............kysfavGgKdgvPypv 312
                  vGp+t+r+Lalvael++g ++  kDP+              y+fa+GgKdg+Pyp+
  CCG91419.1 318 HVGPATIRSLALVAELLFGVPICRKDPIedfpkqingrrwaDYAFAHGGKDGIPYPI 374
                 ********************************************************7 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.1e-07    0.0036     117     235 ..      20     149 ..       4     156 .. 0.83
   2 ?    1.3   0.0     0.018   1.6e+02     177     212 ..     147     182 ..     119     188 .. 0.82
   3 ?   -2.8   0.0      0.32   2.8e+03     377     411 ..     346     380 ..     330     381 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.1e-07
                    HHHHHHHHH.HHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTTTTCBHHHHTCCCCHHHHHTSCCCEE....TT CS
  Amino_oxidase 117 lrlgleall.qktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdpselsaklalpllwelegfggslllp....rg 207
                     + ++ +l+  k++ +l++++ +la ++ +l   e g++e+++rl +p+ f++++ ++g+ +   s+ + +++  +l e ++  g++ +     +g
     CCG91419.1  20 RKTAYLPLHyGKAPSYLFERMVRLARAMTQLIVEEYGPDEMLRRLSDPWWFQAFGCVLGFDWH--SSGLTTVCCGALKEAQKRYGDIGIFvaggKG 113
                    4444444446888899999*****************************************887..99*******************8777877755 PP

                    H........THHHHHHHHHTTTTEEEETSEEEEEEE CS
  Amino_oxidase 208 G........lsqlpealaeelrgldirlntrVkeik 235
                    G        +++++++la  + +  ir+++ V +++
     CCG91419.1 114 GesrktpeeIARIADRLAINAAESLIRTSRLVAKVD 149
                    576666667888888888888888888888888877 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.018
                    TSTTTTCBHHHHTCCCCHHHHHTSCCCEETTHTHHH CS
  Amino_oxidase 177 agdpselsaklalpllwelegfggslllprgGlsql 212
                      d  +l+ ++al+++++++  +gs ++++ G+++ 
     CCG91419.1 147 KVDSAALQDGFALYHHCFFFTASGSWCVIQQGMNET 182
                    455578999************************986 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.32
                    SSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHH CS
  Amino_oxidase 377 vpepkatlvtrWhtdplargsysyvsvgpghedyd 411
                    ++ pk+++ +rW + ++a+g     ++  ++  yd
     CCG91419.1 346 EDFPKQINGRRWADYAFAHGGKDGIPYPIDRVSYD 380
                    556888999*********99988888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2913.26
//
Query:       CCG91420.1  [L=506]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.066   13.8   0.0       0.12   13.0   0.0    1.3  1  YtkA      YtkA-like


Domain annotation for each model (and alignments):
>> YtkA  YtkA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.6e-06      0.12      60      85 ..     375     401 ..     365     401 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.6e-06
        YtkA  60 elkesedGvYeae.vnfsmeGtWqvql 85 
                 +lk+++ G Y +   nfs++G Wq+++
  CCG91420.1 375 SLKKEKEGAYYFSaKNFSHPGNWQIKI 401
                 68889********9***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3392.78
//
Query:       CCG91421.1  [L=232]
Description: DNA-binding response regulator, NarL family (REC-HTH domains) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-25   87.6   0.0    9.4e-25   87.0   0.0    1.3  1  Response_reg     Response regulator receiver domain
      2e-18   65.7   0.1    3.3e-18   65.0   0.1    1.4  1  GerE             Bacterial regulatory proteins, luxR family
    5.3e-06   26.0   0.2      1e-05   25.1   0.2    1.5  1  Sigma70_r4_2     Sigma-70, region 4
  ------ inclusion threshold ------
      0.012   15.1   0.2      0.023   14.2   0.2    1.4  1  Sigma70_r4       Sigma-70, region 4
      0.022   15.2   0.4      0.055   13.9   0.2    1.7  2  HTH_40           Helix-turn-helix domain
      0.025   14.3   0.0      0.052   13.4   0.0    1.4  1  HTH_23           Homeodomain-like domain
      0.046   13.3   0.0       0.11   12.0   0.0    1.6  1  HTH_24           Winged helix-turn-helix DNA-binding
       0.12   12.4   0.0       0.41   10.7   0.0    1.8  2  Phage_terminase  Phage terminase small subunit
       0.13   12.4   0.0       0.25   11.5   0.0    1.4  1  Trp_repressor    Trp repressor protein


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   4.7e-28   9.4e-25       1     112 []      14     126 ..      14     126 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 4.7e-28
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   vlivdD+ ++re+l+ ++  +  + +++ ae++++ +el+++ k+d++l+Di++pg +Glel+k i++  pe+p+++l++h+e+  a++ l+aga +
    CCG91421.1  14 VLIVDDHAVLREGLAYIIGtDPSLCVCGMAENAQKGFELVEKLKPDIVLVDISLPGKSGLELVKDIHAIYPEIPILVLSMHEESLFAERLLRAGARG 110
                   8******************877777999********************************************************************* PP

                   EEESSG-HHHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkale 112
                   +l+K    e+Ll+a++
    CCG91421.1 111 YLMKSEGGEKLLQAIN 126
                   *************986 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.1   1.7e-21   3.3e-18       3      57 .]     163     217 ..     161     217 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 1.7e-21
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 Ls+RE+ev++l+ +G+s+ +IAe+l++S kTV++++++i +KL+++s +elv++a
  CCG91421.1 163 LSDRELEVFQLIGKGLSSRQIAEQLHLSIKTVEAYRASIKQKLKLQSGTELVHYA 217
                 9****************************************************98 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.2   5.1e-09     1e-05       8      54 .]     160     205 ..     160     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 5.1e-09
                   HTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   8 laeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   l +L+ r+ e+f l+  +gls ++IAe+l++s +tV+ + +  ++kL
    CCG91421.1 160 LGKLSDRELEVFQLI-GKGLSSRQIAEQLHLSIKTVEAYRASIKQKL 205
                   679***********7.8********************9987777766 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   1.2e-05     0.023       2      38 ..     160     195 ..     160     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVr 38 
                 L +L++re ev++l  g+gl+  +I+e+l++S  +V 
  CCG91421.1 160 LGKLSDRELEVFQLI-GKGLSSRQIAEQLHLSIKTVE 195
                 789***********8.9***************99995 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.1     1e+04      47      60 ..     133     146 ..     118     157 .. 0.58
   2 ?   13.9   0.2   2.7e-05     0.055       5      39 ..     170     204 ..     167     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.1
      HTH_40  47 rlvseeeekeIeea 60 
                  +vs+e+ ++I e 
  CCG91421.1 133 IFVSDEISSRILEG 146
                 35666766666655 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.7e-05
      HTH_40   5 tlelleeglsieeIAkerglkesTIegHLaeliee 39 
                  ++l+ +gls  +IA++ +l+ +T+e + a++ ++
  CCG91421.1 170 VFQLIGKGLSSRQIAEQLHLSIKTVEAYRASIKQK 204
                 579999********************998887776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.6e-05     0.052       9      38 ..     169     198 ..     165     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.6e-05
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvyrwl 38 
                 ++ +l  +Gls r+IA++L+ s  Tv  ++
  CCG91421.1 169 EVFQLIGKGLSSRQIAEQLHLSIKTVEAYR 198
                 56666667******************8766 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.8e-05      0.11      17      36 ..     177     196 ..     165     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.8e-05
      HTH_24  17 risqreLAerlglSpstvnr 36 
                 ++s r++Ae+l+lS+ tv +
  CCG91421.1 177 GLSSRQIAEQLHLSIKTVEA 196
                 79***************976 PP

>> Phage_terminase  Phage terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.1   4.1e+03      16      33 ..     113     130 ..     111     132 .. 0.84
   2 ?   10.7   0.0   0.00021      0.41      10      47 ..     165     202 ..     163     212 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.1
  Phage_terminase  16 ykEsggtlklkdIAkvLd 33 
                       k  gg ++l+ I  +L+
       CCG91421.1 113 MKSEGGEKLLQAINRILE 130
                      577899999999999985 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00021
  Phage_terminase  10 DkAyelykEsggtlklkdIAkvLdvsestvrkWKakDk 47 
                      D+  e+++  g+ l  ++IA+ L +s +tv  ++a  k
       CCG91421.1 165 DRELEVFQLIGKGLSSRQIAEQLHLSIKTVEAYRASIK 202
                      6667899999*********************9998655 PP

>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.25      35      74 ..     163     202 ..     158     208 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
  Trp_repressor  35 laqR.lqvvkeLLkeelsqreIaeelgvSiAtItRvsrsLk 74 
                    l++R l+v++ L+ ++ls r+Iae+l  Si t+   ++s+k
     CCG91421.1 163 LSDReLEVFQ-LIGKGLSSRQIAEQLHLSIKTVEAYRASIK 202
                    5666578999.*******************99876666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1861.00
//
Query:       CCG91422.1  [L=363]
Description: Methanol utilization control sensor protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-14   52.9   0.0    7.2e-14   51.9   0.0    1.5  1  PAS_9        PAS domain
      6e-12   45.6   0.0    1.3e-11   44.5   0.0    1.6  1  PAS          PAS fold
    5.4e-11   42.9   0.9    1.2e-10   41.7   0.9    1.5  1  HisKA_3      Histidine kinase
    1.1e-08   35.6   0.1    1.5e-07   31.9   0.1    2.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    6.1e-07   29.7   0.0    1.3e-06   28.6   0.0    1.6  1  PAS_4        PAS fold
    8.9e-06   25.6   0.0    3.3e-05   23.8   0.0    1.9  2  PAS_8        PAS domain
     0.0017   18.5   0.0     0.0095   16.1   0.0    2.1  2  PAS_7        PAS fold
     0.0056   16.6   0.0      0.017   15.1   0.0    1.8  2  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.038   14.3   0.0      0.075   13.3   0.0    1.4  1  PAS_3        PAS fold
        0.1   12.4   0.0       0.21   11.4   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0     4e-17   7.2e-14       2     104 .]      44     144 ..      43     144 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 4e-17
       PAS_9   2 dgilidnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk.kerevevvlirkngetfwvlltaspvkdddgelvgiivil 99 
                 +g l+ +++g+i   N+aa++l+Gy++ e+  k++ +l+  +p++++ +r +l  ++k +  ++e+  ++k+ +tf+ ++++s v+ ++g++ +  v++
  CCG91422.1  44 EGLLVLDSEGNIKLTNKAAEELFGYHRMELFRKPFVELL-APPYRQKWIRTFLAKKKKkPINQYELLGQKKDKTTFFMEISVSEVFLKEGKVLS--VLV 139
                 6888889********************************.*******************99*********************************..*** PP

       PAS_9 100 rDite 104
                 rDi e
  CCG91422.1 140 RDIRE 144
                 ***86 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   7.1e-15   1.3e-11       5     111 ..      37     140 ..      35     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 7.1e-15
                 HHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC..TTSSEEEEEEEEEEEEETTE CS
         PAS   5 aileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl..rdgrpihlevraspvrdagg 101
                 +++++++++ +v+D  g+i ++N+aaeel+G+ r e+ +k++++l+ +++   +++ +++ l+ ++++ + +  +    +d++++ +e+ +s v+ ++g
  CCG91422.1  37 NVIHNIAEGLLVLDSEGNIKLTNKAAEELFGYHRMELFRKPFVELLAPPY---RQKWIRTFLAKKKKKPINQYELLGqkKDKTTFFMEISVSEVFLKEG 132
                 589**********************************************8...888888888888888888887777899******************* PP

                 EEEEEEEEEE CS
         PAS 102 eilgflgvlr 111
                 ++l +l+  r
  CCG91422.1 133 KVLSVLV--R 140
                 9665554..4 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.9   6.7e-14   1.2e-10       1      65 [.     159     223 ..     159     225 .. 0.98

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 6.7e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLrp 65 
                 ER+ri +++HDs+ q L +i  +++ + ++l+++++   e + ei++larea + +R++ + L p
  CCG91422.1 159 ERQRIGQDIHDSLCQLLIGIEFKAQFLSQELREKAAVGHELASEIAKLAREAATSARDIAKGLAP 223
                 9***********************************************************99987 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   8.5e-11   1.5e-07       4     110 ..     267     355 ..     265     357 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 8.5e-11
                 HHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEE CS
   HATPase_c   4 krLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGt 102
                 ++L++i +++v N +k+ + a++i+++   +++++ ++veDnGiG+ ++d                     GlG+  +   + ++g +++++s pg+Gt
  CCG91422.1 267 IQLYRIAQEAVNNVIKH-SGASHIDITFGETSGTIFLQVEDNGIGMKMKDGI-----------------NKGLGFRSMLYRAGMIGANLSIDSLPGKGT 347
                 689**************.88*********7669**************98876.................457777766554556778899999999999 PP

                 EEEEEEES CS
   HATPase_c 103 tftftlpl 110
                 +++++lp 
  CCG91422.1 348 KIICSLPS 355
                 99888875 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   7.4e-10   1.3e-06       3     109 ..      41     146 ..      39     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 7.4e-10
       PAS_4   3 slpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll..pgeerhyelrllPlrdesGevigvl 99 
                 ++ ++l+vld++g++  +N+aa+elfg+++ el  k++ ell ++ ++   r    + + ++pi + e l    ++ + ++e++++ ++  +G+   + 
  CCG91422.1  41 NIAEGLLVLDSEGNIKLTNKAAEELFGYHRMELFRKPFVELLAPPYRQKWIRTFL-AKKKKKPINQYELLGQkkDKTTFFMEISVSEVFLKEGK--VLS 136
                 77899***********************************988874444444332.44566788888877778899999***************..566 PP

       PAS_4 100 visrDiTerr 109
                 v++rDi er+
  CCG91422.1 137 VLVRDIRERK 146
                 6789999997 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.9e-08   3.3e-05       5      53 ..      37      83 ..      33      98 .. 0.74
   2 ?   -1.8   0.0       1.9   3.4e+03      39      64 ..     161     187 ..     150     190 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.9e-08
       PAS_8  5 alfesspdgiavvd.lgdrivdvNqaalellGys.adlkgellgqllpvlr 53
                ++++++++g++v+d +g+ i   N+aa+el+Gy   +l ++++   ++ l 
  CCG91422.1 37 NVIHNIAEGLLVLDsEGN-IKLTNKAAEELFGYHrMELFRKPF---VELLA 83
                689***********7777.*************87555555444...33333 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.9
       PAS_8  39 dlkgellgqllpvlrplledaeqll.d 64 
                 + +g+++++ l++l  ++e+  q+l +
  CCG91422.1 161 QRIGQDIHDSLCQLLIGIEFKAQFLsQ 187
                 567788888888888888888887744 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.3e-06    0.0095       1      45 [.      39      82 ..      39     113 .. 0.85
   2 ?   -0.5   0.0      0.76   1.4e+03      30      65 ..     124     159 ..     118     170 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.3e-06
       PAS_7  1 lenmsqGisvfDadlrLvawNrrylelldlpeelvqvgvpleell 45
                + n+ +G++v+D+++++ + N+   el+++ +  +   +p+ ell
  CCG91422.1 39 IHNIAEGLLVLDSEGNIKLTNKAAEELFGYHRMEL-FRKPFVELL 82
                579**************************987665.666776666 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.76
       PAS_7  30 lpeelvqvgvpleellrynaergefgagdveaever 65 
                 ++e +++ g+ l+ l+r ++er+++++++ ea  ++
  CCG91422.1 124 VSEVFLKEGKVLSVLVRDIRERKALEKAALEASEHE 159
                 567788999999999999999999996655444333 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       3.5   6.2e+03      15      43 ..     185     214 ..     181     222 .. 0.67
   2 !   15.1   0.0   9.5e-06     0.017      35      86 ..     272     319 ..     258     335 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.5
  HATPase_c_2  15 aeavlrr.aglseelldeirlaveEactNa 43 
                  + + lr+ a +  el+ ei   + Ea t a
   CCG91422.1 185 LSQELREkAAVGHELASEIAKLAREAATSA 214
                  555555557777777777777777777655 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 9.5e-06
  HATPase_c_2  35 aveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdp 86 
                   ++Ea++N+++h        ++ +++  +++++ ++v+D+G g + +++ ++
   CCG91422.1 272 IAQEAVNNVIKHSGA----SHIDITFGETSGTIFLQVEDNGIGMKMKDGINK 319
                  679***********8....89********************99887776655 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.2e-05     0.075       5      85 ..      59     137 ..      56     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.2e-05
       PAS_3   5 serveeilGyspeellgkveswldlvhpeDrervrealqealkkgepy.egeyRirrkdGeyrwveararvirdengkpvrv 85 
                 +++ ee++Gy++ el  k   + +l+ p  r++  +++  a kk++p+ + e   ++kd +++ +e +++ ++ ++gk++ v
  CCG91422.1  59 NKAAEELFGYHRMELFRK--PFVELLAPPYRQKWIRTFL-AKKKKKPInQYELLGQKKDKTTFFMEISVSEVFLKEGKVLSV 137
                 7889**************..******************8.446777774666777888999999999999888999988765 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.21       9      54 ..     275     321 ..     270     329 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
  HATPase_c_3   9 elvdNsld.AdaenvkievnknrgktgeivieDdGkGmseeelkn.al 54 
                  e v+N +  + a +++i++ +    t  +++eD+G Gm+ ++ +n +l
   CCG91422.1 275 EAVNNVIKhSGASHIDITFGETS-GTIFLQVEDNGIGMKMKDGINkGL 321
                  55666666578999******986.58899*********9886544355 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2470.80
//
Query:       CCG91423.1  [L=580]
Description: Arginyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-111  372.9   0.0   1.8e-111  372.5   0.0    1.1  1  tRNA-synt_1d     tRNA synthetases class I (R)
    2.3e-31  108.4   0.2    5.8e-31  107.1   0.0    1.8  2  DALR_1           DALR anticodon binding domain
    2.6e-17   63.2   0.0    2.2e-16   60.2   0.0    2.6  3  Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
  ------ inclusion threshold ------
      0.066   12.6   0.0       0.61    9.4   0.0    2.1  1  tRNA-synt_1e     tRNA synthetases class I (C) catalytic domai
      0.077   11.2   0.0       0.13   10.5   0.0    1.2  1  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
       0.14   12.5   0.1       0.36   11.2   0.1    1.7  1  Corona_3         Coronavirus ORF3 protein


Domain annotation for each model (and alignments):
>> tRNA-synt_1d  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.5   0.0  5.9e-115  1.8e-111      13     349 .]     108     443 ..      98     443 .. 0.96

  Alignments for each domain:
  == domain 1  score: 372.5 bits;  conditional E-value: 5.9e-115
                   .---SST-EEEEE----BTTS--BHHHHHHHHHHHHHHHHHHHCT-EEEEEE--B-SSTCHHHHHHHHHHHTTTTTTS-----SCCCHHHHHHHHCC CS
  tRNA-synt_1d  13 qkksrekkkvvvdfssPniakemhvGhLrstiiGdavsrlleflGydvirlnhvGDWGtqfGlLiaylekkqdekllqeqelqdLeafykeakkdyd 109
                     +++e +++v+dfssPniake+hvGhLrsti+Gd++ rl  flG+ vi  nh+GDWGtqfG+++ ++++++d  +l e++l+ Le++y+ ++k+  
    CCG91423.1 108 IEQTKEPQTIVIDFSSPNIAKELHVGHLRSTILGDVLKRLNLFLGHRVIADNHLGDWGTQFGMVLLGYKRYGDPLALAEKPLEYLEGLYVRIQKEAK 204
                   4689999****************************************************************************************** PP

                   CSHCCCHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHCT---EC.--CCCCCCCHHHHHHHHHCTT-EEECTTCEEEEECC.C..TSSCC CS
  tRNA-synt_1d 110 eeeifaerarnyvvkLqsgdedirklwkllvditrtelqklydrldvtlie.rGeslykeslneivkelkkkglvkesdGalvvflde.f..gkrlg 202
                   e e ++e+a+  ++kLqsgd +  klw   v+ + +el+k+y++l+v      Ges+y+++l+++v+el +kg+++ s+Ga  vf ++ f    + +
    CCG91423.1 205 ESERIKEEAKRELQKLQSGDSENLKLWDVFVHASLKELDKIYQKLNVKFDYsLGESVYNPMLPGVVEELLQKGIARYSEGAVCVFFNKdFpeLANKP 301
                   ***********************************************875469*****************************999875266545567 PP

                   EECC-TTS-B-HHHHHHHHHHHHHHTT--SEEEEEEECCCHHHHHHHHHHHHCTTSSTTTSEEEEEEE--EE-TTSSBSBCSSSTC-BHHHHHHHHH CS
  tRNA-synt_1d 203 vvvqksDGgylytttDiaaakerkeelkadkvlyvidsrqslhlqqiflilkkigyvpeskdlehanfGmvlgkdkkkfktrkGetvkLadlLdeal 299
                   +++qk DG+yly ttDia+   r+ + +a++++yv dsrq+lh+qq+f++++ +g     ++leh  fG +lg+dkk++ktr+G  +kL +lL+ea+
    CCG91423.1 302 MIIQKTDGAYLYATTDIATLLFRLSNWQAQRIIYVTDSRQKLHFQQLFALARLLGI---DIQLEHVYFGSILGEDKKPLKTREGTSIKLRELLEEAV 395
                   8******************************************************9...689*********************************** PP

                   HHHHHHHCCCCCCTS-CCCCHCHHHHHHHHHHHHCCCCTS-TTS-EE--H CS
  tRNA-synt_1d 300 eralqlikeknkdkvlqadelekvaeavgvgaikyaDlsknrindyifdw 349
                   +ra q i ek kd  l+ d++ ++a+avg+ga+kyaDls+nri dyif+w
    CCG91423.1 396 NRAYQIIDEKRKD--LSEDKKREIAHAVGIGALKYADLSQNRILDYIFSW 443
                   *************..**********************************9 PP

>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       4.5   1.3e+04       7      32 ..     397     411 ..     387     421 .. 0.45
   2 !  107.1   0.0   1.9e-34   5.8e-31       3     119 .]     459     580 .]     457     580 .] 0.97

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.5
                 HHHHHHHHTTCTTCCCCHCCHCCS-S CS
      DALR_1   7 Riksilrkaeeegekleeealallee 32 
                 R+ +i  +++++            +e
  CCG91423.1 397 RAYQIIDEKRKDL-----------SE 411
                 3333333333332...........23 PP

  == domain 2  score: 107.1 bits;  conditional E-value: 1.9e-34
                 HHHHHHHHHHHHTTCTTCCCCHCCHCC.....S-SHHHHHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHCTSTTSCTHHH.HHHHHH CS
      DALR_1   3 yahaRiksilrkaeeegekleeealal.....leeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeelaaaRLaL 96 
                  ah+Ri+sil+ka+ +g+ ++   ++l       +++e+eL+ka++ f+  l  aa+e +ph l++yly+La+ fhkfY++++vl+++ e  ++ RLa 
  CCG91423.1 459 NAHVRICSILKKAASSGYGSTLGFTSLkfetdTLHPQEIELMKAVLSFKYSLFLAAKENSPHHLCNYLYNLAKVFHKFYEQCPVLGASTESSKQLRLAF 557
                 69***************999999999999*99999**************************************************************** PP

                 HHHHHHHHHHHHHHTT----S-- CS
      DALR_1  97 vkavrqvLangLdlLGieapekm 119
                 ++ ++++L+ gL+lLGie++++m
  CCG91423.1 558 CDFTQRTLSLGLELLGIEPLKEM 580
                 *********************99 PP

>> Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   7.3e-20   2.2e-16       6      84 ..      11      87 ..       7      88 .. 0.90
   2 ?   -3.5   0.0       5.6   1.7e+04      31      64 ..     158     192 ..     155     195 .. 0.68
   3 ?   -2.4   0.1       2.5   7.3e+03       3      22 ..     387     405 ..     386     421 .. 0.57

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 7.3e-20
                     HHHHHHHHHHSS-HHHHGGG-E-.SSGGG-SEEEEGGGG--TT-..-HHHHHHHHHHT---TTTEEEEEEETT.EEEEE CS
  Arg_tRNA_synt_N  6 aiaealkkaagadleeeeiviekpknpkfGDyatnvamqlakklkknPreiAeeiaeklekseiiekvevagpGFiNff 84
                     +++ al++   +++++  +++e  +np fGDy+tnva+ +a++lk+nPr++Aee a  + ++      ev g+GFiNf+
       CCG91423.1 11 KLKVALSEK--FGQTDHIPIVEPCSNPSFGDYQTNVAFLMASQLKENPRKLAEEFARIIGDNSVTFYPEVGGNGFINFR 87
                     567788888..5677777899999***************************************9889***********8 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.6
                      SGGG-SEEEEGGGG--TT-...-HHHHHHHHHHT- CS
  Arg_tRNA_synt_N  31 npkfGDyatnvamqlakklkk.nPreiAeeiaekl 64 
                      ++  GD+ t   m l    +   P  +Ae+  e+l
       CCG91423.1 158 DNHLGDWGTQFGMVLLGYKRYgDPLALAEKPLEYL 192
                      56678888888888876555457777777766655 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.5
                      HHHHHHHHHHHHHSS-HHHH CS
  Arg_tRNA_synt_N   3 lkeaiaealkkaagadleee 22 
                      l+e+++ea+++a+ +  +e+
       CCG91423.1 387 LRELLEEAVNRAY-QIIDEK 405
                      6778888888885.222222 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0002      0.61       8     125 ..     115     283 ..     108     302 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0002
                   TEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHH..HHHHHHHTTS-............................... CS
  tRNA-synt_1e   8 kkvtlYvCGptvydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDk..iikrareeeks............................... 71 
                   +++ +    p +  + h+Gh Rs++  D+l+r+   lg+ v   + + D   +  +++   +++                                 
    CCG91423.1 115 QTIVIDFSSPNIAKELHVGHLRSTILGDVLKRLNLFLGHRVIADNHLGDWGTQfgMVLLGYKRYGDplalaekpleyleglyvriqkeakeserike 211
                   5566666778888999****************98889998877766776655412344444444446666777777777777777777777777777 PP

                   ...................HHHHHHHHHHHHHHHHHHTT----SB--BGGGGHHHHHHHHHHHHHTTSEEE-T CS
  tRNA-synt_1e  72 ...................vkelaekfieefkkdleaLnvlkptleprvsekvdeiielvekliekgyaYavs 125
                                      ++ +++   +e+ k +++Lnv+  +++   s + + + ++ve+l++kg+a  ++
    CCG91423.1 212 eakrelqklqsgdsenlklWDVFVHASLKELDKIYQKLNVKF-DYSLGESVYNPMLPGVVEELLQKGIARYSE 283
                   777777777777777666666666666666666677777765.556666666666777777777777765544 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.3e-05      0.13      17      63 ..     109     155 ..     105     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.3e-05
  tRNA-synt_1  17 ekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkev 63 
                  e++ke ++ ++    P++  +lH+Gh   ++l d++ r + + G++v
   CCG91423.1 109 EQTKEPQTIVIDFSSPNIAKELHVGHLRSTILGDVLKRLNLFLGHRV 155
                  56777788889999***************************999987 PP

>> Corona_3  Coronavirus ORF3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00012      0.36       5      34 ..     229     258 ..     226     262 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
    Corona_3   5 ksidifvdavldeldrayfavtlkvefktG 34 
                 k  d+fv a l eld+ y  + +k ++  G
  CCG91423.1 229 KLWDVFVHASLKELDKIYQKLNVKFDYSLG 258
                 667***************999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.51
# Mc/sec: 3429.60
//
Query:       CCG91424.1  [L=89]
Description: 30S ribosomal protein S20 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-15   57.5  12.3    1.8e-15   57.3  12.3    1.0  1  Ribosomal_S20p  Ribosomal protein S20
  ------ inclusion threshold ------
       0.02   14.2   2.8      0.025   13.9   2.8    1.0  1  MRG             MRG
       0.04   12.2   1.8      0.044   12.0   1.8    1.1  1  MCM3AP_GANP     MCM3AP domain of GANP
       0.18   12.3   1.9        9.5    6.8   0.1    2.3  2  ANAPC2          Anaphase promoting complex (APC) subunit 2
        0.3   10.0   2.4       0.34    9.8   2.4    1.1  1  PAP_central     Poly(A) polymerase central domain
        5.9    7.4   7.6       0.76   10.3   2.6    1.8  2  RED_C           RED-like protein C-terminal region


Domain annotation for each model (and alignments):
>> Ribosomal_S20p  Ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3  12.3   5.9e-19   1.8e-15       1      81 [.       2      83 ..       2      84 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 5.9e-19
                    ..SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC.-HHHHHHHHHHHHHHHHHHHCTTSSTCCHHHHHHHHHHHHH CS
  Ribosomal_S20p  1 ANikSakKrirqnekrrlrNrsyksavrtaiKkvraaiea.dkekaqealkkaiskidkaakkgvihkNtAaRkkSrlakki 81
                    +N+kSa+K  r++e++r+ N + k++++  +K+++a i+a +ke+a   +++++s +d+++k++ +  NtA+Rkk rl kki
      CCG91424.1  2 PNTKSAEKNQRKSERKRIFNLRAKKELKEQLKQLKALIDAkKKEEALSFFPTIQSLLDRLVKRKKLVANTANRKKKRLLKKI 83
                    7*************************************6659**************************************97 PP

>> MRG  MRG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.8   8.3e-06     0.025       6      82 ..       5      78 ..       2      86 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.3e-06
         MRG  6 eeseeekkkrpeikv.kleipeeLkklLedDwelitknkklvkLPaklnvkeILedYvkheakkkaetsereaeknve 82
                ++ e++++k ++ ++ +l+  +eLk++L++   li  +kk  +L   ++++++L++ vk+++  ++  ++++    + 
  CCG91424.1  5 KSAEKNQRKSERKRIfNLRAKKELKEQLKQLKALIDAKKKEEALSFFPTIQSLLDRLVKRKKLVANTANRKK----KR 78
                34455555555555589******************************************9988666543322....34 PP

>> MCM3AP_GANP  MCM3AP domain of GANP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.8   1.5e-05     0.044     665     709 ..       5      49 ..       1      59 [. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.5e-05
  MCM3AP_GANP 665 veseqskrseeqlressekteaslserLkeLerlikasreeelac 709
                  ++ e+++r++e++r    + ++ l+e+Lk+L+ li a+++ee+ +
   CCG91424.1   5 KSAEKNQRKSERKRIFNLRAKKELKEQLKQLKALIDAKKKEEALS 49 
                  55667777777777777788999**************99998754 PP

>> ANAPC2  Anaphase promoting complex (APC) subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.3    0.0099        30      30      52 ..      27      49 ..      18      53 .. 0.78
   2 ?    6.8   0.1    0.0032       9.5      38      54 ..      54      70 ..      51      73 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0099
      ANAPC2 30 gydisdeeLkefLdelvkegkLe 52
                + + + ++Lk++ d + ke+ L 
  CCG91424.1 27 ELKEQLKQLKALIDAKKKEEALS 49
                55567899***********9997 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0032
      ANAPC2 38 LkefLdelvkegkLels 54
                ++++Ld+lvk +kL+ +
  CCG91424.1 54 IQSLLDRLVKRKKLVAN 70
                789***********965 PP

>> PAP_central  Poly(A) polymerase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.4   0.00011      0.34      15      78 ..      21      84 ..       7      88 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00011
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PAP_central 15 dlklteeLieeLkeqnlfeseeetkkreevlekleklvkefvkklkevpedldlkddslLknld 78
                 +l++++eL e+Lk+ ++  +++++++  + + ++++l++++vk+ k v ++ + k+++lLk++ 
   CCG91424.1 21 NLRAKKELKEQLKQLKALIDAKKKEEALSFFPTIQSLLDRLVKRKKLVANTANRKKKRLLKKIG 84
                 578899****************999***********************************9875 PP

>> RED_C  RED-like protein C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.6   0.00025      0.76      69     104 ..       9      46 ..       3      52 .. 0.81
   2 ?   -0.0   0.2      0.39   1.2e+03      79      95 ..      69      85 ..      54      89 .] 0.47

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00025
       RED_C  69 adgrktrkkk..ekdekakldrelqkiekilkkrkkee 104
                 ++ rk+ +k+  +   k++l ++l++++++++ +kkee
  CCG91424.1   9 KNQRKSERKRifNLRAKKELKEQLKQLKALIDAKKKEE 46 
                 34677777776778999***************999987 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.39
       RED_C 79 ekdekakldrelqkiek 95
                +++ ++k  r l+ki k
  CCG91424.1 69 ANTANRKKKRLLKKIGK 85
                33333333444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2263  (0.12622); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 578.76
//
Query:       CCG91425.1  [L=260]
Description: Methionine aminopeptidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-48  163.0   0.1      9e-48  162.7   0.1    1.0  1  Peptidase_M24  Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.7   0.1     5e-52     9e-48       1     209 []      11     239 ..      11     239 .. 0.89

  Alignments for each domain:
  == domain 1  score: 162.7 bits;  conditional E-value: 5e-52
                    HHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT.....TCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEETTEEEE CS
  Peptidase_M24   1 elirkaariasaaleavleaikpgvterelaaeieattlkrhg.....arglafppivasgenaavlhytpndrvlkegdlvlidagaeydgyasD 91 
                    e++r+++r++ +++e++   + pg+t++e+++ + +  ++  g      ++ +fp+++++++n++v+h++ ++r++++gdlv++d+g+ +dg+++D
     CCG91425.1  11 EAMRRSCRVVTEIIEKIRPILAPGITTEEVDKYAAHL-IESYGaksafLGYRGFPGNICISINEEVVHGIGGKRKIQYGDLVKLDVGIILDGWIGD 105
                    5799999999999999988899*************76.77777888999999******************************************** PP

                    EEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEESSSSSEEEEEESS..STTCSSB--TTBEEE CS
  Peptidase_M24  92 itrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesaglakffphglGHgvGlevhdegpsvsr..esndgrkleeGmvft 185
                    ++ T+ vG+ + e  +l+e++ +a+  +i+++++G+++++i+ a+++++ ++g+ +++++++GHgvG+++h++ p+v++  ++++g kl++Gm+++
     CCG91425.1 106 TAKTYPVGTVDVEDLRLIEVTNKALMLGIAQAQEGNRIGDISSAIERYVLEQGY-QVVKEFVGHGVGRKLHEK-PHVPNfgKPGQGPKLKAGMTIA 199
                    ********99999999**************************************.999*************99.**999776779*********** PP

                    EEE............EEEEETTT........EEEEEBEEEEEES CS
  Peptidase_M24 186 iEp............giyfapge........ggvriedtvlvte 209
                    iEp                 +g+         ++++e+tvl+t+
     CCG91425.1 200 IEPmvnrgsgkvlmmP----DGWtavtedgqRSAHFEHTVLITK 239
                    ***4444443322220....244666666537**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2004.68
//
Query:       CCG91426.1  [L=131]
Description: 30S ribosomal protein S13 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-33  115.1   4.8    7.8e-32  110.4   4.8    2.0  1  Ribosomal_S13  Ribosomal protein S13/S18
  ------ inclusion threshold ------
      0.021   13.6   0.0      0.026   13.3   0.0    1.2  1  FbpA           Fibronectin-binding protein A N-terminus (FbpA
      0.081   12.9   0.0       0.12   12.3   0.0    1.3  1  H2TH           Formamidopyrimidine-DNA glycosylase H2TH domai


Domain annotation for each model (and alignments):
>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   4.8   1.3e-35   7.8e-32       1     128 []       3     110 ..       3     110 .. 0.99

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 1.3e-35
  Ribosomal_S13   1 RilgtdidgkkkveialtaikGiGrrkakiilkkadvdedkrigelteeeiekieeivenkaqykipnwinrqkdikdGkdshvvendlrrklred 96 
                    Rilg++i+g+k +  al  i+GiGr +ak i+++a+++ ++r+++lt+++i++i +++e+                    + +v+e+dlrr+++++
     CCG91426.1   3 RILGVEIPGNKPLIAALPVIYGIGRSRAKLICEQAELNPQMRAKDLTNQQINRIIQVIEE--------------------NGFVIEGDLRREVQQN 78 
                    9**********************************************************9....................579************* PP

  Ribosomal_S13  97 ieRlkkirsyrGlRHkrGlkvRGQrTkttgRt 128
                    i+Rl++ir+yrGlRH rGl+vRGQrT t++Rt
     CCG91426.1  79 IKRLQSIRCYRGLRHIRGLPVRGQRTSTNART 110
                    *******************************8 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.4e-06     0.026     192     238 ..      18      63 ..       7     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.4e-06
                 HHHHHBTTXXHHHHHHHHTTXSSSH...............HHHHHHH CS
        FbpA 192 aLvkafqGlspllaeelleragldketsakelseedlerlyealqel 238
                 aL   + G+++  a+ ++e+a+l+++ +ak+l++++++r+ + ++e 
  CCG91426.1  18 ALPVIY-GIGRSRAKLICEQAELNPQMRAKDLTNQQINRIIQVIEEN 63 
                 555667.*********************************9988875 PP

>> H2TH  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.1e-05      0.12      35      76 ..      21      62 ..      13      69 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.1e-05
                TSCS--HHHHHHHHHHTT--TTSBGGGS-HHHHHHHHHHHHH CS
        H2TH 35 lvaGlGNiyadEvLfrakihPerlakslskeelellhqeike 76
                ++ G+G   a  +  +a ++P++ ak l+++++++++q i e
  CCG91426.1 21 VIYGIGRSRAKLICEQAELNPQMRAKDLTNQQINRIIQVIEE 62
                67788888888888899********************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      712  (0.0397122); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1055.17
//
Query:       CCG91427.1  [L=180]
Description: Ribosomal protein S11 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-44  149.3   1.2    6.6e-44  148.8   1.2    1.2  1  Ribosomal_S11   Ribosomal protein S11
  ------ inclusion threshold ------
      0.013   15.8   1.1      0.072   13.5   0.3    2.0  2  Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. a
      0.068   13.3   0.1       0.11   12.6   0.1    1.3  1  WI12            Wound-induced protein WI12
       0.11   12.2   0.0       0.16   11.7   0.0    1.2  1  DUF4637         Domain of unknown function (DUF4637)


Domain annotation for each model (and alignments):
>> Ribosomal_S11  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8   1.2   1.5e-47   6.6e-44       1     110 []      70     179 ..      70     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 148.8 bits;  conditional E-value: 1.5e-47
  Ribosomal_S11   1 GvahiqasfnntiititdlkGaevlvksaGglgvkasrkssPyaaqlaaekaaekvldkGikavevkvkgpGpGreaalralaraGlkigriedvt 96 
                    G+++i a+fnnti+titd++G++v+++saG +g+++ +ks+ y aql+a++aa++++ +G+++v vkvkgpG+Gre+a+ral++ Gl+++ i dvt
     CCG91427.1  70 GIVNILATFNNTIVTITDMSGKTVAWSSAGKCGFRGTKKSTAYVAQLVAQDAARQAMGHGMREVIVKVKGPGTGRESAIRALQAVGLEVTSILDVT 165
                    899********************************************************************************************* PP

  Ribosomal_S11  97 PiPhdgirrpkkrr 110
                    PiPh+g+r++k rr
     CCG91427.1 166 PIPHNGCRPKKPRR 179
                    ***********998 PP

>> Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2     0.084   3.7e+02      45     106 ..      17      76 ..      10      79 .. 0.67
   2 ?   13.5   0.3   1.6e-05     0.072      40      91 ..      84     135 ..      51     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.084
                     T--EEEEECS-SCCCTS-SSSCHHHHHHHHHHHHHHHCHHCHTC-EE--TTSSS-CHHHHHH CS
  Ribosomal_L18p  45 kgktlasastlekelklkstknkeaakkvgeliAerakekgiekvvfDrggykYhGrvaalA 106
                      ++ +as+s l+ + +  ++k+++    +++ + ++  + +i kv    +   Y G v+ lA
      CCG91427.1  17 GNSQMASTSELAGKAQNIKKKENQGEDLLSTPLEQEQEKIKIPKVR--ASKAIYNGIVNILA 76 
                     5667788888888777556666666666777777777777777774..34456777777776 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.6e-05
                     EE-TTT--EEEEECS-SCCCTS-SSSCHHHHHHHHHHHHHHHCHHCHTC-EE CS
  Ribosomal_L18p  40 viddvkgktlasastlekelklkstknkeaakkvgeliAerakekgiekvvf 91 
                      i d++gkt+a +s+ +  ++++++++   a+ v+++ A++a+  g+++v+ 
      CCG91427.1  84 TITDMSGKTVAWSSAGKCGFRGTKKSTAYVAQLVAQDAARQAMGHGMREVIV 135
                     477899***************999999********************99985 PP

>> WI12  Wound-induced protein WI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.4e-05      0.11      40      82 ..      59     102 ..      46     128 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.4e-05
        WI12  40 yWvhaWtvk.dGvitqvreyfntsltvtrlsksaagkeaaiaas 82 
                   v a +   +G++  +  + nt +t+t++s  ++ +++a  + 
  CCG91427.1  59 PKVRASKAIyNGIVNILATFNNTIVTITDMSGKTVAWSSAGKCG 102
                 5566655444*************************999875443 PP

>> DUF4637  Domain of unknown function (DUF4637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.5e-05      0.16      22     101 ..       5      83 ..       1      92 [. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.5e-05
     DUF4637  22 aeeeseeedeeedraeeesaaegeeesreaeeaegrekgsvsysPlrqessaqevallrradsgfwgwlsPlallsglaa 101
                 ++e++ + ++ee +++ +s++e + ++++++++e++    +  +Pl qe    ++  +r +++ + g +  la +++ ++
  CCG91427.1   5 NQEKKPKVKKEEGNSQMASTSELAGKAQNIKKKENQ-GEDLLSTPLEQEQEKIKIPKVRASKAIYNGIVNILATFNNTIV 83 
                 344444444444556666666666666777777766.3455569************************999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1211.66
//
Query:       CCG91428.1  [L=202]
Description: 30S ribosomal protein S4 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-29  102.8   0.7    2.4e-29  102.1   0.7    1.4  1  Ribosomal_S4  Ribosomal protein S4/S9 N-terminal domain
    2.1e-19   68.9   0.0    5.6e-19   67.6   0.0    1.7  2  S4            S4 domain
  ------ inclusion threshold ------
       0.09   12.6   0.0       0.15   11.9   0.0    1.4  1  Ub-Mut7C      Mut7-C ubiquitin
       0.11   12.4   0.0       0.19   11.6   0.0    1.3  1  S4_2          S4 domain


Domain annotation for each model (and alignments):
>> Ribosomal_S4  Ribosomal protein S4/S9 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.7   5.3e-33   2.4e-29       1      83 []       3      91 ..       3      91 .. 0.99

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 5.3e-33
                  TT-S-CHHHHCHCTS-STSSS.....S-S-SSTTTTS.-----CHCHHHHHHHHHHHHHT-SHHHHHHHHHHHHHCCSHHHHHHHHHHH CS
  Ribosomal_S4  1 rykgpkckllRrvgfklflkg.....reyppGqhgkr.rkklseYgkqlrekqklkrrYgllekqfrryfkearrirGktgenLlqlLE 83
                  +y+gpk k++Rr+++ lf+ +     ++yppG hg+r  kk+s+Y++ l ekqkl+++Yg++ekqfrryf++a +++G+tge+L qlLE
    CCG91428.1  3 KYIGPKAKISRRFNVALFGPNkalerKPYPPGIHGQRaAKKKSDYAVALAEKQKLRFMYGIMEKQFRRYFQIAHKKKGVTGEVLFQLLE 91
                  699**********************************9**************************************************9 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   1.3e-22   5.6e-19       1      48 []      92     139 ..      92     139 .. 0.99
   2 ?   -2.8   0.0       1.2   5.5e+03      14      28 ..     182     196 ..     181     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 1.3e-22
                 EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4   1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48 
                 +RLd++++rl +a sr eArql++hG+++VNGk+v++psyr kpgDvi
  CCG91428.1  92 QRLDNIVYRLCFATSRMEARQLVNHGHIYVNGKKVNIPSYRTKPGDVI 139
                 6*********************************************98 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                 SSHHHHHHHHHTTTE CS
          S4  14 ssrreArqlIehGrV 28 
                 ++r e++ +++++ V
  CCG91428.1 182 PTREEIQPIVNEQLV 196
                 699999988888776 PP

>> Ub-Mut7C  Mut7-C ubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.4e-05      0.15      50      79 ..     117     147 ..     113     149 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.4e-05
    Ub-Mut7C  50 elilvnGesvg.fshiledGdrvavypvfea 79 
                 + i vnG++v+ +s++ ++Gd +++ p+ ++
  CCG91428.1 117 GHIYVNGKKVNiPSYRTKPGDVIEICPKPQS 147
                 6799******9569*************9875 PP

>> S4_2  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.3e-05      0.19      25      57 ..     109     141 ..     101     148 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.3e-05
        S4_2  25 eaKafiaegeVkvNGevetrRgkKlraGdvVei 57 
                 ea+++++ g++ vNG++ +    +  +Gdv+ei
  CCG91428.1 109 EARQLVNHGHIYVNGKKVNIPSYRTKPGDVIEI 141
                 89*****************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1387.67
//
Query:       CCG91429.1  [L=337]
Description: RNA polymerase, alpha subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-25   86.8   3.7      1e-24   86.0   3.7    1.4  1  RNA_pol_A_CTD  Bacterial RNA polymerase, alpha chain C termin
    1.6e-23   81.9   0.1    5.3e-23   80.2   0.0    1.9  2  RNA_pol_L      RNA polymerase Rpb3/Rpb11 dimerisation domain
    3.8e-21   75.6   0.1    9.3e-21   74.3   0.1    1.6  1  RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain


Domain annotation for each model (and alignments):
>> RNA_pol_A_CTD  Bacterial RNA polymerase, alpha chain C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   3.7   1.7e-28     1e-24       2      66 ..     248     312 ..     247     313 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 1.7e-28
                    ...XXXXXXX--BHHHHT--HHHHHHHHHTT--BHHHHHHS-HHHHTTSSS-SSHHHHHHHHHHH CS
  RNA_pol_A_CTD   2 eeeeeelkklsisIeeLeLSvRslNcLkragiktvgeLvklseeeLlkikNlGkKSleEIkekLe 66 
                    eee++ +k l++s++e+eLSvR+ NcL++a+i+tvg+L+ ++e+e+lk +N+GkKSl+EIkekL+
     CCG91429.1 248 EEENRLRKILNMSVNEIELSVRAANCLNNANITTVGQLAMKTEAEMLKYRNFGKKSLNEIKEKLA 312
                    6788899********************************************************96 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   8.9e-27   5.3e-23       1      69 []      31     226 ..      31     226 .. 0.92
   2 ?   -1.7   0.0      0.32   1.9e+03      15      27 ..     253     265 ..     251     311 .. 0.67

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 8.9e-27
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................... RF
   RNA_pol_L   1 efllrgvdhtlgNaLRrillsevpgvaiea..................................................................... 30 
                 e++++g++htlgN+LRrills+++g+ai++                                                                     
  CCG91429.1  31 EPFESGYGHTLGNSLRRILLSSLEGAAIASvkidgvmheftsipgvvedvidivlnlkkvlikmpdretrnfridvlkegpvtaadiqvdpgveivnpe 129
                 799*****************************************************************************9999999999999999999 PP

                 ...............................................xxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  31 ...............................................pvvkvn...........tdkdklilevetdgslkPeealkeAlkiLkekl 69 
                                                                pv++v+           td+d+li+e++tdg + P+ea+ +++ iL+ +l
  CCG91429.1 130 qlictldqkkhlmmelevkvgrgfllgeynkkqdqsigvipidclfsPVRHVKyeventrvgqrTDYDRLIFEIWTDGRIGPDEAIVQSAAILQHHL 226
                 9999999999999999998888888888888888888888888888877777777888889999******************************997 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.32
                 xxxxxxxxxxxxx RF
   RNA_pol_L  15 LRrillsevpgva 27 
                 LR+il  +v  ++
  CCG91429.1 253 LRKILNMSVNEIE 265
                 6666666655443 PP

>> RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.1   1.6e-24   9.3e-21       2     106 ..      62     153 ..      60     159 .. 0.92

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 1.6e-24
                    EEEECTSSS.HHHHHCHHHCSTCBSSCHHHHHHHHCTT-ETSSSSTTCSEEEEEEEEESSECEEGGGCBESSSSCEESSTTSEEEEEETT-EEEEE CS
  RNA_pol_A_bac   2 eieentsvlqDEvvaHrlgliplvsedvleillnlkelveeeeegeeeksvelkLnvkgpgevtagdlkledadveivnpdilIakLrkgqelele 97 
                    +i  ++       v H++++ip+v edv +i+lnlk++ +   +  ++++  ++++v ++g vta+d+++ d+ veivnp++lI++L ++++l +e
     CCG91429.1  62 KI--DG-------VMHEFTSIPGVVEDVIDIVLNLKKVLI---KMPDRETRNFRIDVLKEGPVTAADIQV-DPGVEIVNPEQLICTLDQKKHLMME 144
                    55..56.......99***********************65...778888889*****************9.************************* PP

                    EEEEEESSE CS
  RNA_pol_A_bac  98 akvkkGiGk 106
                    ++vk G+G 
     CCG91429.1 145 LEVKVGRGF 153
                    ********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2456.43
//
Query:       CCG91430.1  [L=131]
Description: 50S ribosomal protein L17 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-32  112.6   0.9    1.6e-32  112.3   0.9    1.1  1  Ribosomal_L17  Ribosomal protein L17
  ------ inclusion threshold ------
      0.047   14.0   0.0      0.064   13.6   0.0    1.2  1  PFOR_II        Pyruvate:ferredoxin oxidoreductase core domain
       0.11   12.2   0.2       0.13   12.0   0.2    1.1  1  DUF1678        Protein of unknown function (DUF1678)


Domain annotation for each model (and alignments):
>> Ribosomal_L17  Ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   0.9   2.7e-36   1.6e-32       1      93 [.      20     115 ..      20     116 .. 0.96

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 2.7e-36
                    HHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHS-...HHHHHHHTHHHHTSS--S--EEEEEEEE-TTTH-EEEEEEE CS
  Ribosomal_L17   1 LlrnlvtsLleherIetTlakAkelrklaeklitlakkgelaarrkalayla...lvkkLfeelapryadrngGYtRilklgprrgDaaemailel 93 
                    Ll nl+ +L+eh+rI+tTlakAk+lr++aekl++lakkg+l+arr ++++++   +++ Lf+++a ++++rngGYtRilklg+r  Da+ema++e+
     CCG91430.1  20 LLANLAVELIEHKRIKTTLAKAKALRPFAEKLVSLAKKGTLHARRLVVSKIHdkkAARVLFNDIASQMQNRNGGYTRILKLGNRLSDASEMALIEW 115
                    799************************************************445589*************************************96 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.1e-05     0.064      16      97 ..      23     105 ..      17     110 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHTT--EEEEEES--BS--HHHHHHHSTT-..SEEEEEE-S--TT-G-HHHHHHHHHTGGGTSEEEEEE--GGG--- CS
     PFOR_II  16 ksavdelReegikvGllrlrtlrPFPeeelkellkkv..kkvvvldrnisfgseGqlveevkaalkkskvkvvnfvaglgGrdi 97 
                   av+ + ++ ik+ l + ++lrPF e+ ++ + k++  ++ +v+ + ++  ++ +l+++++++++++    +  + +lg r+ 
  CCG91430.1  23 NLAVELIEHKRIKTTLAKAKALRPFAEKLVSLAKKGTlhARRLVVSKIHDKKAARVLFNDIASQMQNR-NGGYTRILKLGNRLS 105
                 66899999999***************99998777654223345555555556669**********998.666677777776665 PP

>> DUF1678  Protein of unknown function (DUF1678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   2.2e-05      0.13      58     155 ..       4     114 ..       1     122 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.2e-05
     DUF1678  58 rGrtlylGkeenesvsfvewl...vsldrkevlklaralrralrsvlktl............lteleelvkkkvrrvlarllalefdarrlgspgirdv 141
                 + rt  lG++      ++  l   + ++++ + +la+a  +alr+   +l               ++++  kk+ rvl    a +++ r+ g+ +i ++
  CCG91430.1   4 QKRTQKLGRDSQHRAALLANLaveLIEHKRIKTTLAKA--KALRPFAEKLvslakkgtlharRLVVSKIHDKKAARVLFNDIASQMQNRNGGYTRILKL 100
                 56899999999999999977766666777777777765..677777777777788889887755699*****************************999 PP

     DUF1678 142 leelpdrledilvr 155
                  + l d  e  l++
  CCG91430.1 101 GNRLSDASEMALIE 114
                 99999988877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1026.66
//
Query:       CCG91431.1  [L=717]
Description: Polyphosphate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-76  256.0   0.3    1.9e-75  252.0   0.0    2.2  2  PP_kinase_C_1  Polyphosphate kinase C-terminal domain 1
    5.9e-75  250.5   0.1    3.7e-74  247.9   0.0    2.2  2  PP_kinase_C    Polyphosphate kinase C-terminal domain 2
    2.9e-68  229.4   0.1      5e-68  228.7   0.1    1.4  1  PP_kinase      Polyphosphate kinase middle domain
    9.4e-43  144.9   0.4    2.9e-42  143.4   0.1    2.0  2  PP_kinase_N    Polyphosphate kinase N-terminal domain
    4.6e-12   46.0   0.2    0.00022   21.1   0.1    3.1  2  PLDc_2         PLD-like domain


Domain annotation for each model (and alignments):
>> PP_kinase_C_1  Polyphosphate kinase C-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.0   0.0   5.2e-79   1.9e-75       1     165 [.     334     498 ..     334     500 .. 0.99
   2 ?    1.7   0.1     0.046   1.6e+02      51      94 ..     519     561 ..     507     569 .. 0.77

  Alignments for each domain:
  == domain 1  score: 252.0 bits;  conditional E-value: 5.2e-79
                    SHHHHHHHS-EEEECTTB-SCHHHHHHHHHHC-TTEEEEEEEES-S-S--HHHHHHHHHHHTT-EEEEEES--SSS--HHHHHHHHHHHHHT-EEE CS
  PP_kinase_C_1   1 sifeairkkdillhhPyesfesvvelleeAaedpkvlaikitlYrvakdskivkaLieAaengkqvtvlvElkArfdeenNiewakkleeagvkvv 96 
                    ++fe+irk+d+llhhPyesf  +v++l++Aa dp+vl i++tlYr++ ds+iv+aLi+Aa+ngkqvt+lvE+kArfdeenNi+wa+++eeagv+v+
     CCG91431.1 334 NLFEVIRKTDVLLHHPYESFGIIVDFLQKAAIDPSVLGIRMTLYRTSGDSPIVHALIRAAQNGKQVTALVEIKARFDEENNIQWARRMEEAGVHVL 429
                    589********************************************************************************************* PP

                    E--TT--B--EEEEEEE---S---EEEEEESS-SS---SS-EEEEEEEE--HHHHHHHHHHHHHHTT-- CS
  PP_kinase_C_1  97 ygvvglkvhaklllvvrreeeklrryvhlgtGnynektaklYtDlslltadeelgedveklfnvltgks 165
                    yg+vglk+h+k+l ++rr+ +++r yvhl+tGny+++ta+lYtDlsllt++ee++++v++lfn+ltg s
     CCG91431.1 430 YGIVGLKTHCKMLEIIRRDPDQIRLYVHLATGNYHPSTARLYTDLSLLTTNEEITKEVATLFNILTGLS 498
                    *****************************************************************9876 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.046
                    HHHHHHHHHHHTT-EEEEEES--SSS--HHHHHHHHHHHHHT-E CS
  PP_kinase_C_1  51 kivkaLieAaengkqvtvlvElkArfdeenNiewakkleeagvk 94 
                    ++++  i+ a++gk+  ++  l+A  de+  i+   + ++agvk
     CCG91431.1 519 EMIQREINNAKEGKKARIIAKLNALVDEDI-IQHLYAASSAGVK 561
                    677888899999************999964.5555555566665 PP

>> PP_kinase_C  Polyphosphate kinase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.2   7.1e+02      40      61 ..     382     403 ..     379     438 .. 0.79
   2 !  247.9   0.0     1e-77   3.7e-74       1     172 []     506     676 ..     506     676 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.2
  PP_kinase_C  40 dkeiidkLyeAsqaGVkikliv 61 
                  d+ i+++L++A+q G +++ +v
   CCG91431.1 382 DSPIVHALIRAAQNGKQVTALV 403
                  5668888888888888887766 PP

  == domain 2  score: 247.9 bits;  conditional E-value: 1e-77
  PP_kinase_C   1 LlvaplnlrekllelidreieaakagkkakiilklNsledkeiidkLyeAsqaGVkiklivrgicclrpgvkglsenikvisivdrfLEhaRiyifen 98 
                  L+v+p+n+ ++l e+i+rei++ak+gkka+ii+klN+l+d++ii++Ly+As+aGVki+livrgicclrpg++++seni+visiv+rfLEh+Ri++fen
   CCG91431.1 506 LIVSPFNMASRLKEMIQREINNAKEGKKARIIAKLNALVDEDIIQHLYAASSAGVKIDLIVRGICCLRPGIPQVSENIRVISIVGRFLEHSRIFYFEN 603
                  89************************************************************************************************ PP

  PP_kinase_C  99 ggeeevyisSaDlmtRnldrRvevlvpvedeklkkelkeilelqlkDnvkareldedgeykkvkekeekkvraQ 172
                  gg++e+y +SaD+m+Rn++rR+e+++p+e++klk++++eile++l+Dn karel ++g y+++k+ e+++++aQ
   CCG91431.1 604 GGNPEYYSGSADWMQRNFYRRIEIIFPIEHPKLKEKVQEILEAYLADNIKARELLPNGIYRRIKP-EKEPFQAQ 676
                  ****************************************************************5.67777777 PP

>> PP_kinase  Polyphosphate kinase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.7   0.1   1.4e-71     5e-68       2     201 ..     126     326 ..     125     327 .. 0.96

  Alignments for each domain:
  == domain 1  score: 228.7 bits;  conditional E-value: 1.4e-71
                 HHHHHHHHHHHTTGGG---EE--TTTS-----TT-EEEEEEEESST-SS-..EEEEEE--TTS-SEEEE-.T.TSS-.EEEEHHHHHHCCHHHH-TTSE CS
   PP_kinase   2 qkefleeyFeeevfpvLtplavdpshpfpflsnkslnlavelrkkekeekekefalvkvPsvlpRfielp.peeegkerfilledvIeanldelFpgye 99 
                 + e++++yF++e+fpvLtplavd+shpfp l nk lnl+++l+++ + ++ ++f++v++P+ lpR+i+lp ++++++ rfill d++ ++ld+lFpg e
  CCG91431.1 126 ELEWCKTYFDKEIFPVLTPLAVDSSHPFPQLVNKCLNLILTLKRP-NASHMHNFGIVQIPRILPRLITLPgSNSKSGFRFILLSDLVINFLDTLFPGDE 223
                 679*****************************************9.556669*****************996677778********************* PP

                 EEEEEEEEEE-SSS----.---.-------------------EEEEETT--HHHHCCHTTTT---TTT.EEEE-S--GGGGGCS....--TTTSSS--- CS
   PP_kinase 100 vleaylfrvtRnadleidedeaedlleeiekeLkkRrrgevvRLeveaempeellkfLlkeleldeedvyeidgpldltdlmklvg.kdrpeLkyppft 197
                 ++++++fr+tRn++l+ide+eae+ll+++e+eLkkR+rg++vRLe+e+++p+el+++Llk+l+ld++d+y+ + pl++  l  +++ +++p+L+++p+t
  CCG91431.1 224 IQDVNSFRITRNSELYIDEEEAENLLQTVEEELKKRNRGNAVRLEIESTCPKELEEILLKALHLDHRDSYRNPDPLNFLHLLPICNhEGFPHLRDRPWT 322
                 *************************************************************************************889*********** PP

                 -B-- CS
   PP_kinase 198 pqtp 201
                 p+ p
  CCG91431.1 323 PVIP 326
                 *987 PP

>> PP_kinase_N  Polyphosphate kinase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.1     8e-46   2.9e-42       1     106 [.      11     116 ..      11     117 .. 0.99
   2 ?   -2.8   0.0       2.3   8.2e+03      50      59 ..     516     525 ..     473     554 .. 0.52

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 8e-46
                  XXXHHHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHCCHHHHH.HTT-..-----------HHHHHHHHHHHHHHHHHHHHHHTHHHH CS
  PP_kinase_N   1 ylnRelSwLkFneRVLeeAedervplleRlkFlaIfssNlDEFfmvRvaslkrqleakvekksedgltpeeqlkaiseeveelveeqekileeellpe 98 
                  ++nRelSwL+Fn+RVLeeA+d+++plleRl+Fl+IfssNlDEFf++Rva++k+q+e++ e++s+dgltp + ++ i+++++elve+q+ki++ee++p+
   CCG91431.1  11 FINRELSWLEFNARVLEEAADPKQPLLERLRFLCIFSSNLDEFFEIRVAGIKQQIENGSEEQSADGLTPLQVFEGIEKRTHELVEKQYKIWNEEIKPA 108
                  89************************************************************************************************ PP

                  HHHTTEEE CS
  PP_kinase_N  99 Laeegikl 106
                  L+++gi+l
   CCG91431.1 109 LKKNGIFL 116
                  ******87 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.3
                  HHHH.HTT-. CS
  PP_kinase_N  50 slkrqleakv 59 
                   lk+++++++
   CCG91431.1 516 RLKEMIQREI 525
                  3333333332 PP

>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   7.6e-08   0.00027      13     130 ..     373     492 ..     362     494 .. 0.83
   2 !   21.1   0.1   6.1e-08   0.00022       3     131 ..     523     646 ..     521     648 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 7.6e-08
      PLDc_2  13 diatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfetll.gslHaKlylidgk.......tvivGSsNltk 103
                 ++  y    d+ i+ al++aa++g++v  l+     +a++ de+++ ++++ + eagv v           H K++ i ++       +v + + N+ +
  CCG91431.1 373 RMTLYRTSGDSPIVHALIRAAQNGKQVTALVEI---KARF-DEENNIQWARRMEEAGVHVLYG-I-VgLKTHCKMLEIIRRdpdqirlYVHLATGNYHP 465
                 5555666668899*******************9...5566.567777777777******6642.3.23678*****8865557889999999******* PP

      PLDc_2 104 rgldlnlElnvviedkelakeleeeFe 130
                 +  +l ++l + ++++e++ke++  F+
  CCG91431.1 466 STARLYTDLSLLTTNEEITKEVATLFN 492
                 ***********************9997 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 6.1e-08
      PLDc_2   3 qliksAk..ksidiatyyf.vsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfe.t.llgslHaKlylid...gkt 93 
                 ++i++Ak  k+ +i+      +d++i+++l++a++ gvk+ ++++       +  ++   + +e      ++v  +  + l+   H+ ++ ++   +  
  CCG91431.1 523 REINNAKegKKARIIAKLNaLVDEDIIQHLYAASSAGVKIDLIVRG-----ICCLRPGIPQVSEN-----IRVISIVgRfLE---HSRIFYFEnggNPE 608
                 6788888885666655544469***********************9.....44443444444444.....332222212344...*******9665459 PP

      PLDc_2  94 vivGSsNltkrgldlnlElnvviedkelakeleeeFer 131
                  + GS+ + +r++ ++ E+++ ie+++l ++++e+ e+
  CCG91431.1 609 YYSGSADWMQRNFYRRIEIIFPIEHPKLKEKVQEILEA 646
                 99*******************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 4549.67
//
Query:       CCG91432.1  [L=432]
Description: Nuclease of restriction endonuclease-like fold,RmuC family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-75  253.9   2.9    1.6e-75  253.9   2.9    1.7  2  RmuC             RmuC family
     0.0029   17.3   2.3     0.0041   16.8   0.7    1.9  2  DUF3394          Domain of unknown function (DUF3394)
     0.0058   16.0  30.4      0.073   12.4  15.5    4.1  4  GAS              Growth-arrest specific micro-tubule binding
      0.008   15.9   1.0      0.026   14.2   0.0    2.3  2  DUF4736          Domain of unknown function (DUF4736)
  ------ inclusion threshold ------
      0.025   14.5   0.1        0.1   12.5   0.0    2.0  2  SfsA             Sugar fermentation stimulation protein RE do
      0.026   15.0  19.0          1    9.9   7.5    4.1  4  DUF16            Protein of unknown function DUF16
       0.03   14.1   5.1       0.19   11.5   1.2    3.4  2  LapA_dom         Lipopolysaccharide assembly protein A domain
      0.039   14.2   0.3      0.039   14.2   0.3    3.6  3  Osmo_CC          Osmosensory transporter coiled coil
      0.042   14.1   0.4        1.5    9.2   0.4    2.7  1  DUF5623          Domain of unknown function (DUF5623)
      0.058   13.1   0.0       0.13   11.9   0.0    1.6  1  FAM176           FAM176 family
       0.06   12.8   0.2       0.06   12.8   0.2    3.2  4  Flagellar_rod    Paraflagellar rod protein
      0.081   13.4   3.4        1.2    9.6   0.6    3.2  2  DUF4208          Domain of unknown function (DUF4208)
       0.25   10.6  17.6        0.1   11.9   7.0    3.3  3  DUF4763          Domain of unknown function (DUF4763)
       0.32   10.6  19.2      0.067   12.9  10.9    3.0  3  BCAS2            Breast carcinoma amplified sequence 2 (BCAS2
       0.33   11.7   5.7        1.6    9.5   0.7    3.3  3  Plk4_PB2         Polo-like Kinase 4 Polo Box 2
       0.86   10.8   0.1       0.86   10.8   0.1    4.3  5  SOGA             Protein SOGA
        2.6    8.5  11.7         13    6.3   0.1    3.9  4  DUF4140          N-terminal domain of unknown function (DUF41
        8.8    5.8  18.2       0.17   11.4   5.2    3.3  4  Fzo_mitofusin    fzo-like conserved region


Domain annotation for each model (and alignments):
>> RmuC  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.1       1.9   1.9e+03      45      45 ..      65      65 ..      31     117 .. 0.52
   2 !  253.9   2.9   1.7e-78   1.6e-75       2     286 ..     127     409 ..     126     413 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.9
        RmuC 45 l 45
                +
  CCG91432.1 65 Q 65
                1 PP

  == domain 2  score: 253.9 bits;  conditional E-value: 1.7e-78
        RmuC   2 qleellkplkeklekfeekveeeskeeaeeleslkeqlkelqelneqlgdeaenLtkaLknsktrGnwGEvqLerilessgleegeeyetqvslkdeeg 100
                 +++e++ p++++le++++++++ +++++ +++sl+++l++l+e  ++l+++a +L++ Lk++ +rG wGE+qL+r++e++g++e++ y  q    d+ +
  CCG91432.1 127 EFKEIVMPIEKSLEALDQQIKNLESKREGAYSSLSTHLTHLSEAYKELHESAIKLEQSLKSPLVRGSWGEYQLQRLVEMAGMKEHVSYIPQPP--DA-D 222
                 67899***************************************************************************************9..45.4 PP

        RmuC 101 elrpDvvvklpggkklviDsKvpleaYerlveaeddeereealkahaksvkkhikeLseKdYeele..sldyvlmFiPiEsayaealeadpeLleealr 197
                 + r D+++ +pg++k+ +D+K+p+ aY++++ a+++++r+++lk+h+++vk++i+eL +K+Y + +  + +yv+mF+P+E++++  +eadpe++++al+
  CCG91432.1 223 K-RADMIIYIPGNRKIYVDAKTPMGAYLEAMTADNETTRKTKLKEHLAAVKERIRELGKKEYGQNQtdAFEYVIMFLPNEGLLSVSFEADPEIFQYALE 320
                 5.9***********************************************************999667******************************* PP

        RmuC 198 kkVvlasPttLlalLrtvamlwrqeaqeknaeeiaellgelydkfekfgedleklgkklekaqksydkavkklegnilrkaeklkelgv 286
                 +kV+lasP + lalL+++a +w+q+++++++e+ia +++ely+ f++++e l++l+k+l +++++++k+++  +g+i+ + +k+k+ g+
  CCG91432.1 321 RKVLLASPINFLALLKAIALGWQQQQMTEEVEKIAYEIKELYSSFVELMELLNRLRKALGSSMEAFNKIATLCQGKIIPSTKKIKTSGA 409
                 ********************************************************************888888**********99886 PP

>> DUF3394  Domain of unknown function (DUF3394)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.7   4.1e-06    0.0041      36     143 ..      17     123 ..      15     143 .. 0.81
   2 ?   -0.9   0.0       1.2   1.2e+03     102     177 ..     268     346 ..     245     349 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.1e-06
     DUF3394  36 LlvaftLfrPgffldlisppyeelepselvevveelpkgselrlkvegenlegeeiektvalplgeeatgeerLeaaGltlleedgkvlvdeve..fgs 132
                 +l+++ L+rP ++l  +++  e+++ +e ++ ++   ++++l+l+++  + + + ++ ++    ++++t +++++++ l++le++ k ++++ +  f s
  CCG91432.1  17 FLLTLLLLRPRYIL--LQKDLERYK-NENEDLINLQAQNKDLELQIATLEAQKKAQQEQILWVTAAQDTLKTMFQSLALQVLESNSKNILEQATyqFHS 112
                 5899********97..667777776.55688999999*************999999999888888899999*************999999876644888 PP

     DUF3394 133 paekagldfdf 143
                   e+ + d++ 
  CCG91432.1 113 LFESMKADWNL 123
                 88877777665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.2
     DUF3394 102 eatgeerLeaaGltlleedg....kvlvdevefgspaekagldfdfeivevevpadrppkelvyipAllllalvallQrr 177
                  a+++er++++G   + +++    +  v +   +    +  ++ d ei + +++++ +    +   All  +++ + Q++
  CCG91432.1 268 LAAVKERIRELGKKEYGQNQtdafEY-VIMFLPNEGLLSVSFEADPEIFQYALERKVLLASPINFLALLKAIALGWQQQQ 346
                 45667777777764444433222111.33333333344456777777777777777777777777788888888777765 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4  15.5   7.4e-05     0.073      73     200 .]      31     149 ..      25     149 .. 0.81
   2 ?    5.0   3.4     0.013        13      54     116 ..     123     186 ..     114     188 .. 0.77
   3 ?    1.0   0.1      0.23   2.3e+02      54      75 ..     259     280 ..     237     290 .. 0.63
   4 !    6.3   0.2    0.0056       5.5     104     132 ..     340     368 ..     335     388 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.4e-05
         GAS  73 LrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknllLekklkalqeelEkkeaqleevlaa 171
                 L+k+l++y+++ ++l nl+a++k+le ++ +l+ +++  ++++  v ++ d+l+  f++   +v +   + + +Le+   + +   E+ +       a 
  CCG91432.1  31 LQKDLERYKNENEDLINLQAQNKDLELQIATLEAQKKAQQEQILWVTAAQDTLKTMFQSLALQVLES--NSKNILEQATYQFHSLFESMK-------AD 120
                 99*********************************************************77776543..233345555555544444433.......34 PP

         GAS 172 anldpaalsavsekleevlesKnqeIkdL 200
                  nl++++ +++   +e+ le+ +q+Ik+L
  CCG91432.1 121 WNLKKQEFKEIVMPIEKSLEALDQQIKNL 149
                 57888888899999999999999999887 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.013
         GAS  54 qenkrlkepLkkaeeeveeLrkqlknyekdkq.slknlkarlkelekelkdlkwehevleqrfe 116
                  ++++ ke +   e+ +e L +q+kn e++++ ++ +l ++l++l + +k+l++++  leq ++
  CCG91432.1 123 LKKQEFKEIVMPIEKSLEALDQQIKNLESKREgAYSSLSTHLTHLSEAYKELHESAIKLEQSLK 186
                 5566677777777888888999999887666538899999999999999999999888888775 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.23
         GAS  54 qenkrlkepLkkaeeeveeLrk 75 
                 +++ +lke L +++e + eL k
  CCG91432.1 259 TRKTKLKEHLAAVKERIRELGK 280
                 3444555555555555555554 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0056
         GAS 104 lkwehevleqrfekvekerdelykkfeaa 132
                 l w+++++ +++ek+  e++ely++f + 
  CCG91432.1 340 LGWQQQQMTEEVEKIAYEIKELYSSFVEL 368
                 77999999999999999999999999875 PP

>> DUF4736  Domain of unknown function (DUF4736)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       2.5   2.4e+03      92     122 ..     145     175 ..     124     181 .. 0.49
   2 !   14.2   0.0   2.6e-05     0.026      32     104 ..     313     386 ..     301     406 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.5
     DUF4736  92 qleralkkqaeaeeelstaleelleahekll 122
                 q++++ +k+ +a  +lst+l +l+ea ++l+
  CCG91432.1 145 QIKNLESKREGAYSSLSTHLTHLSEAYKELH 175
                 2222222222223333355555555555554 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.6e-05
     DUF4736  32 llvllilslivllililvllsyveptvlsrkirrekeelekpllevkrrYrrFI.vmRLlaqleralkkqaeae 104
                  +  + l  +vll+  + +l+ ++++ l  ++++ +ee+ek   e+k+ Y +F+ +m Ll +l +al  ++ea 
  CCG91432.1 313 EIFQYALERKVLLASPINFLALLKAIALGWQQQQMTEEVEKIAYEIKELYSSFVeLMELLNRLRKALGSSMEAF 386
                 566788888999999999************************************99***********8887765 PP

>> SfsA  Sugar fermentation stimulation protein RE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.9   1.9e+03      74      90 ..     162     178 ..      81     183 .. 0.68
   2 ?   12.5   0.0    0.0001       0.1      20      84 ..     204     273 ..     184     277 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHTT-EEE CS
        SfsA  74 khleeLaelvkegyrav 90 
                  hl +L e+ ke ++++
  CCG91432.1 162 THLTHLSEAYKELHESA 178
                 57777777777766665 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.0001
                 ....EEES-EE......TTEE-SEEEE-S.SSEEEEEEEE--EE..EEEEE-SS--HHHHHHHHHHHHHHH CS
        SfsA  20 gyeeikrevky......gnsriDfllekeeeekcyvEVKsvtleeggialfPdapteRgqkhleeLaelvk 84 
                 +++ +k+ v y       ++r D+ +  + ++k+yv  K++  +    a+  d  t+R +k  e+La++++
  CCG91432.1 204 EMAGMKEHVSYipqppdADKRADMIIYIPGNRKIYVDAKTPMGAYL-EAMTADNETTRKTKLKEHLAAVKE 273
                 4555788888888888899******99999***********99964.8******************99887 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   7.5     0.001         1      22      80 ..      32      95 ..      24     119 .. 0.77
   2 ?    3.9   1.7     0.075        75       7      60 ..      96     152 ..      93     189 .. 0.61
   3 ?    0.6   0.0      0.77   7.6e+02      48      76 ..     259     287 ..     244     300 .. 0.73
   4 ?    5.9   0.1     0.018        18      45      94 ..     339     388 ..     318     391 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
                HHHHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......... CS
       DUF16 22 rkqlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln......k 80
                +k+l+ +k++ +++L++++a+ + l+ qi+ le + ++q+e+i   ++ q++ +  ++       
  CCG91432.1 32 QKDLERYKNE-NEDLINLQAQNKDLELQIATLEAQKKAQQEQILWVTAAQDTLKTMFQslalqvL 95
                89******76.579*****************************9999999999998886555432 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.075
                 XXXXXX.X.XTTB-BHHHHHHB-.....BHHHHHHHHHHHH...HHHHHHHHHHHHH CS
       DUF16   7 neivKkiPvkteYVTrkqlnefkds...nkqrLkkieakvdklgeqinkleqkvekq 60 
                 ++  K+i  +  Y  +  ++  k +    kq++k+i   ++k  e ++++ ++ e +
  CCG91432.1  96 ESNSKNILEQATYQFHSLFESMKADwnlKKQEFKEIVMPIEKSLEALDQQIKNLESK 152
                 666777777888888888888888877777888876655555544444444444433 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.77
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DUF16  48 eqinkleqkvekqgekikelkveqkaqge 76 
                  +  kl+++  +  e+i+el ++   q++
  CCG91432.1 259 TRKTKLKEHLAAVKERIRELGKKEYGQNQ 287
                 45567888888888888888777666555 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.018
                 ...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHH CS
       DUF16  45 klgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqk 94 
                 +lg q+++++++vek   +ikel        e ln++ ++l + +e+ +k
  CCG91432.1 339 ALGWQQQQMTEEVEKIAYEIKELYSSFVELMELLNRLRKALGSSMEAFNK 388
                 578899999***********999999888888777777766665555554 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2    0.0002      0.19      24      59 ..       6      45 ..       4      72 .. 0.57
   2 ?    1.7   0.1      0.23   2.3e+02      47      62 ..     137     152 ..     131     154 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
    LapA_dom 24 lvafgiGallgwllsl....wsylrlrrelrrlkkkikkl 59
                lv+f++G+ +g+ll+l    ++y+ l++ l r k+++++l
  CCG91432.1  6 LVSFLVGVGIGFLLTLlllrPRYILLQKDLERYKNENEDL 45
                6777777777777777433366664444444444444332 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.23
    LapA_dom  47 relrrlkkkikkleke 62 
                 + l +l+++ik le +
  CCG91432.1 137 KSLEALDQQIKNLESK 152
                 67899********987 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.8      0.73   7.2e+02      23      37 ..      54      68 ..      47      72 .. 0.82
   2 ?   14.2   0.3   3.9e-05     0.039      17      36 ..     135     154 ..     125     157 .. 0.91
   3 ?   -0.9   0.1       2.1     2e+03      19      31 ..     349     361 ..     343     374 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.73
                HHHHHHHHHHHHHHH CS
     Osmo_CC 23 dideeIaaLeekRqr 37
                d++ +Ia Le++++ 
  CCG91432.1 54 DLELQIATLEAQKKA 68
                8899******98764 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHHHHHHHHHHH CS
     Osmo_CC  17 IEqkvedideeIaaLeekRq 36 
                 IE+++e +d++I++Le kR+
  CCG91432.1 135 IEKSLEALDQQIKNLESKRE 154
                 9******************8 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHH CS
     Osmo_CC  19 qkvedideeIaaL 31 
                 ++ve i  eI++L
  CCG91432.1 349 EEVEKIAYEIKEL 361
                 6799999999998 PP

>> DUF5623  Domain of unknown function (DUF5623)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4    0.0015       1.5       6      71 ..     234     301 ..     232     381 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0015
     DUF5623   6 akkmpvevHqevgrllkelles..varskgvssrlsavrstLddWlemEyseeelddeayfdiYYgdl 71 
                 ++k+ v+  + +g+ l+++++   ++r+++ +++l av+ ++ +  ++Ey ++++d+ +y  ++ ++ 
  CCG91432.1 234 NRKIYVDAKTPMGAYLEAMTADneTTRKTKLKEHLAAVKERIRELGKKEYGQNQTDAFEYVIMFLPNE 301
                 78888999999999999987651145667799**********************99999986666655 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00013      0.13      25      83 ..       8      66 ..       2     107 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
      FAM176 25 lFvlgvcvGLlltLcllvir.iscrkdlerlkkkkkklkeesekasededeeeeeeeeds 83
                 F++gv +G lltL+ll  r i  +kdler k+++++l + +++ ++d + +  + e ++
  CCG91432.1  8 SFLVGVGIGFLLTLLLLRPRyILLQKDLERYKNENEDLINLQAQ-NKDLELQIATLEAQK 66
                69***************976488899999888888887766543.233332222222221 PP

>> Flagellar_rod  Paraflagellar rod protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.8     0.057        57     215     251 ..      37      76 ..      31     106 .. 0.74
   2 ?   12.8   0.2   6.1e-05      0.06     185     234 ..     136     185 ..     130     188 .. 0.94
   3 ?   -1.8   0.3       1.8   1.8e+03       8      34 ..     255     281 ..     251     292 .. 0.56
   4 ?   -2.4   0.1       2.6   2.6e+03      60      78 ..     344     362 ..     340     386 .. 0.55

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.057
  Flagellar_rod 215 eyseakkell...eqkkeveeqinalkakqdkaeedfkpt 251
                    +y++++++l+   +q k +e qi+ l+a++++++e++  +
     CCG91432.1  37 RYKNENEDLInlqAQNKDLELQIATLEAQKKAQQEQILWV 76 
                    6666666655222678889999999999888888877544 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 6.1e-05
  Flagellar_rod 185 errleeldrqirlaeiqrelamesldPnakeyseakkelleqkkeveeqi 234
                    e+ le ld+qi+  e +re a  sl  +  + sea kel e + ++e+ +
     CCG91432.1 136 EKSLEALDQQIKNLESKREGAYSSLSTHLTHLSEAYKELHESAIKLEQSL 185
                    7899*************************************999999877 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.8
  Flagellar_rod   8 dakkrlkeaveeDlekikekreeeaaa 34 
                    d+++ +k +++e l  +ke+++e  ++
     CCG91432.1 255 DNETTRKTKLKEHLAAVKERIRELGKK 281
                    455555555555555555555555444 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 2.6
  Flagellar_rod  60 qeklvreieelereLqkla 78 
                    q+++ +e+e+ + e+++l 
     CCG91432.1 344 QQQMTEEVEKIAYEIKELY 362
                    4444444444444444332 PP

>> DUF4208  Domain of unknown function (DUF4208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.6    0.0012       1.2       7      49 ..     124     166 ..     115     187 .. 0.78
   2 ?    2.7   0.0      0.17   1.7e+02      35      61 ..     256     282 ..     243     304 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
     DUF4208   7 deeeckellrpvkksLkrLkkltkekl.lskkerakilkkeLlk 49 
                 +++e ke+  p++ksL+ L+++ k+ l  +++   + l + L++
  CCG91432.1 124 KKQEFKEIVMPIEKSLEALDQQIKN-LeSKREGAYSSLSTHLTH 166
                 66789***************99877.535666666677776665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.17
     DUF4208  35 skkerakilkkeLlkiGdfIdellkek 61 
                 +++ r  +lk+ L ++ ++I+el k++
  CCG91432.1 256 NETTRKTKLKEHLAAVKERIRELGKKE 282
                 333444445555555555555444443 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   7.0    0.0001       0.1      89     152 ..      32      95 ..      30     104 .. 0.91
   2 ?   -1.2   0.2         1   9.9e+02     113     148 ..     143     182 ..     137     188 .. 0.43
   3 ?    4.4   0.2      0.02        20     113     153 ..     341     381 ..     336     393 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0001
     DUF4763  89 dlelelltseqpeileLqrnnhkLrqqlaelqqhlkasrkslkelreslcqekkrlrklqkrln 152
                 +++le+ ++e+ ++ +Lq +n  L  q+a l+ ++ka+++++  +++ +  +k + ++l+ +  
  CCG91432.1  32 QKDLERYKNENEDLINLQAQNKDLELQIATLEAQKKAQQEQILWVTAAQDTLKTMFQSLALQVL 95 
                 678999999**********************************999999999999999876655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1
     DUF4763 113 rqqlaelqqhlk....asrkslkelreslcqekkrlrklq 148
                  qq+++l+++++    +  ++l++l e + ++ + + kl+
  CCG91432.1 143 DQQIKNLESKREgaysSLSTHLTHLSEAYKELHESAIKLE 182
                 4444444443321111333444444444444444444444 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.02
     DUF4763 113 rqqlaelqqhlkasrkslkelreslcqekkrlrklqkrlne 153
                   q++++++  ++   ++kel +s  ++++ l++l+k l+ 
  CCG91432.1 341 GWQQQQMTEEVEKIAYEIKELYSSFVELMELLNRLRKALGS 381
                 56999999999999999999999999999999999999875 PP

>> BCAS2  Breast carcinoma amplified sequence 2 (BCAS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  10.9   6.7e-05     0.067      92     187 ..      78     183 ..      30     187 .. 0.69
   2 ?   -3.8   0.1       8.7   8.6e+03     137     153 ..     262     278 ..     255     286 .. 0.61
   3 ?   -1.4   0.1       1.6   1.6e+03     129     158 ..     348     377 ..     333     388 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.7e-05
       BCAS2  92 aweealrnakaqlehqalRqeNleLlekyg..........knaWrvhneqleaelkklekeleetkeeieevnrqRkseQeeageeLksleekWrelvs 180
                 a +++l+   ++l+ q l ++  ++le+            k  W +++++ ++++  +ek le++ ++i++++ +R  +  +++++L++l+e+++el +
  CCG91432.1  78 AAQDTLKTMFQSLALQVLESNSKNILEQATyqfhslfesmKADWNLKKQEFKEIVMPIEKSLEALDQQIKNLESKREGAYSSLSTHLTHLSEAYKELHE 176
                 4555555555555555555555555554333355566666889******************************************************** PP

       BCAS2 181 knleiea 187
                 + +++e 
  CCG91432.1 177 SAIKLEQ 183
                 9999987 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 8.7
       BCAS2 137 kklekeleetkeeieev 153
                 +kl+++l+++ke+i e+
  CCG91432.1 262 TKLKEHLAAVKERIREL 278
                 34555555555555554 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.6
       BCAS2 129 neqleaelkklekeleetkeeieevnrqRk 158
                 +e++e+++ ++++   ++ e +e +nr Rk
  CCG91432.1 348 TEEVEKIAYEIKELYSSFVELMELLNRLRK 377
                 223333333333333333444444444444 PP

>> Plk4_PB2  Polo-like Kinase 4 Polo Box 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.9      0.26   2.6e+02      40      95 ..      89     145 ..      48     153 .. 0.77
   2 ?    9.5   0.7    0.0016       1.6      40      91 ..     136     187 ..     112     193 .. 0.85
   3 ?    2.0   0.0      0.32   3.2e+02      60      96 ..     343     381 ..     320     389 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.26
    Plk4_PB2  40 gekvkiieksgksltleseeeleslsselkkllehaeeclkq.clklesalssleke 95 
                 + ++++ e++ k++  ++  + +sl +++k+ ++  ++ +k+ ++ +e++l++l+++
  CCG91432.1  89 SLALQVLESNSKNILEQATYQFHSLFESMKADWNLKKQEFKEiVMPIEKSLEALDQQ 145
                 335888999988888888888999999999999887766665157899999988876 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0016
    Plk4_PB2  40 gekvkiieksgksltleseeeleslsselkkllehaeeclkqclklesalss 91 
                 +++++  +++ k+l+ ++e + +sls++l +l e ++e ++ ++kle++l+s
  CCG91432.1 136 EKSLEALDQQIKNLESKREGAYSSLSTHLTHLSEAYKELHESAIKLEQSLKS 187
                 446788899999999999*******************************986 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.32
    Plk4_PB2  60 eleslsselkkllehaeeclkqclklesalssleke..k 96 
                 +++++++e++k+   ++e ++  ++l ++l++l+k+  +
  CCG91432.1 343 QQQQMTEEVEKIAYEIKELYSSFVELMELLNRLRKAlgS 381
                 468899999999999999999999999999998876443 PP

>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   2.0      0.94   9.3e+02      33      63 ..      31      65 ..      27      98 .. 0.58
   2 ?   -0.2   0.3       2.3   2.3e+03      58      84 ..     126     152 ..      92     155 .. 0.58
   3 ?   -0.1   0.2       2.1   2.1e+03      26      53 ..     135     162 ..     128     188 .. 0.55
   4 ?   10.8   0.1   0.00087      0.86      55      84 ..     252     281 ..     235     283 .. 0.84
   5 ?    1.8   0.1      0.55   5.5e+02      27      49 ..     341     363 ..     334     405 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.94
        SOGA 33 lteeLnkyksklgeeessleeee......eassdssk 63
                l+++L++yk + ++  + +++++      +  + +++
  CCG91432.1 31 LQKDLERYKNENEDLINLQAQNKdlelqiA--TLEAQ 65
                667777777777766665555433443220..11122 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 2.3
        SOGA  58 ssdsskeaelkeeLklarlqineLsgk 84 
                 ++ ++   ++++ L++  +qi++L+ k
  CCG91432.1 126 QEFKEIVMPIEKSLEALDQQIKNLESK 152
                 333344556667777777777777655 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 2.1
        SOGA  26 leeenkqlteeLnkyksklgeeesslee 53 
                 +e+  + l ++++ + sk +   ssl++
  CCG91432.1 135 IEKSLEALDQQIKNLESKREGAYSSLST 162
                 5666666666666666665555555444 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00087
        SOGA  55 eeassdsskeaelkeeLklarlqineLsgk 84 
                  +a+++++++++lke+L ++++ i+eL++k
  CCG91432.1 252 MTADNETTRKTKLKEHLAAVKERIRELGKK 281
                 46788999*******************988 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.55
        SOGA  27 eeenkqlteeLnkyksklgeees 49 
                   +++q+tee++k  ++ +e  s
  CCG91432.1 341 GWQQQQMTEEVEKIAYEIKELYS 363
                 55677778887777777665544 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   2.2     0.045        44      63      95 ..      41      73 ..      29      76 .. 0.77
   2 ?    6.3   0.1     0.013        13      59      95 ..     124     160 ..      96     163 .. 0.79
   3 ?    1.2   0.1      0.49   4.9e+02      55      80 ..     255     281 ..     237     291 .. 0.63
   4 ?   -1.0   0.0       2.4   2.4e+03      54      88 ..     342     379 ..     335     384 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.045
     DUF4140 63 eeeelkalraeleeledelaaledelaaaearl 95
                e+e+l  l+a+ + le ++a le++++a ++++
  CCG91432.1 41 ENEDLINLQAQNKDLELQIATLEAQKKAQQEQI 73
                333489999999999999999999999999987 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
     DUF4140  59 nreaeeeelkalraeleeledelaaledelaaaearl 95 
                  +++++e +  ++++le+l +++++le++++ a ++l
  CCG91432.1 124 KKQEFKEIVMPIEKSLEALDQQIKNLESKREGAYSSL 160
                 4455554488999999999999999999999886655 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.49
     DUF4140  55 ervpnreaeeee.lkalraeleelede 80 
                 ++++ r+++ +e l+a++++++el ++
  CCG91432.1 255 DNETTRKTKLKEhLAAVKERIRELGKK 281
                 444444444444577777777777655 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.4
     DUF4140  54 vervpnreaeee...elkalraeleeledelaaledel 88 
                 +++++ +e++e+   e+k+l ++  el + l++l+++l
  CCG91432.1 342 WQQQQMTEEVEKiayEIKELYSSFVELMELLNRLRKAL 379
                 55556666666666667777777777777777766655 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2       1.2   1.2e+03     116     136 ..      47      67 ..      30      74 .. 0.51
   2 ?   11.4   5.2   0.00017      0.17      55     159 ..      71     171 ..      68     173 .. 0.89
   3 ?   -2.0   0.1       2.2   2.2e+03     112     133 ..     259     280 ..     241     287 .. 0.69
   4 ?    2.8   0.2     0.079        79     113     156 ..     343     387 ..     334     389 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.2
  Fzo_mitofusin 116 eleeeikelekeiekleevqk 136
                    +l+++ k+le +i++le+ +k
     CCG91432.1  47 NLQAQNKDLELQIATLEAQKK 67 
                    455555555555555554443 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00017
  Fzo_mitofusin  55 ErltwtnkakEralKrQfveyatekLrlivsltsancshqvqqelsstfarlcqqvdetekeleeeikelekeiekleevqkkakllrnka.slle 149
                    E++ w ++a++ +lK  f + a + L    +  s+n+ +q + +++s f+ ++++ +  ++e++e +  +ek++e+l++ +k+++  r+ a s+l+
     CCG91432.1  71 EQILWVTAAQD-TLKTMFQSLALQVL----ESNSKNILEQATYQFHSLFESMKADWNLKKQEFKEIVMPIEKSLEALDQQIKNLESKREGAySSLS 161
                    88999999986.79999999997655....6789************************************************99999988745799 PP

  Fzo_mitofusin 150 seLekfeeqy 159
                    ++L++ +e y
     CCG91432.1 162 THLTHLSEAY 171
                    9999888887 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.2
  Fzo_mitofusin 112 etekeleeeikelekeieklee 133
                    + +++l+e++++++++i++l +
     CCG91432.1 259 TRKTKLKEHLAAVKERIRELGK 280
                    3356788888888888888765 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.079
  Fzo_mitofusin 113 tekeleeeikelekeiekleevqkkakllrnka.slleseLekfe 156
                    ++++++ee++++  ei++l +   ++  l n+  + l s++e+f+
     CCG91432.1 343 QQQQMTEEVEKIAYEIKELYSSFVELMELLNRLrKALGSSMEAFN 387
                    6899***************98888777777665256777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1729  (0.0964359); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 2954.02
//
Query:       CCG91433.1  [L=42]
Description: hypothetical protein MFUM_1030016 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        94  (0.0052429); expected 358.6 (0.02)
Passed bias filter:                       79  (0.00440627); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.43
# Mc/sec: 296.00
//
Query:       CCG91434.1  [L=63]
Description: hypothetical protein MFUM_1030017 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 479.39
//
Query:       CCG91435.1  [L=80]
Description: hypothetical protein MFUM_1040001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 600.92
//
Query:       CCG91436.1  [L=360]
Description: Uncharacterized conserved membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-42  144.4  33.8    6.6e-42  144.1  33.8    1.0  1  LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
  ------ inclusion threshold ------
        6.2    6.9   8.1        1.3    9.1   3.3    2.0  2  Arv1             Arv1-like family


Domain annotation for each model (and alignments):
>> LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1  33.8   7.3e-46   6.6e-42       1     301 []      41     341 ..      41     341 .. 0.89

  Alignments for each domain:
  == domain 1  score: 144.1 bits;  conditional E-value: 7.3e-46
  LPG_synthase_TM   1 illglalsalllalllrgvdlaalaaalrsldpwwlllalllallsvllralrWrlllrslgarislrrllrayliglfvnnvtPgalgGevvr 94 
                      i+l+ ++s +ll++l ++++++++++  +s+d  +l +a+l+++l+++l++lrW+lll +l+ +i+ ++++ + +ig f+n ++Pg++ G++vr
       CCG91436.1  41 IVLKTLVSFSLLFYLGSKLNWQKFFSYCQSIDLLFLGFAFLFCALQTILSSLRWKLLLFALNIPIRGWTAFELAMIGKFFNAALPGGTSGDFVR 134
                      689999**************************************************************************************** PP

  LPG_synthase_TM  95 ayllkrkegvslskalasvvverlldllalvllgllallllggllaegaa...vllllalallllavlalllllllrrrlarlarvlkrlarll 185
                      +y+ ++    + +++  s++ +rl+++++l++lg  + ll+++ l+ ++    ++++l+++ ll ++++  l +ll++  +  +r l ++ r  
       CCG91436.1 135 IYYAMELFPRNKTAVSVSILFDRLIEGVVLLVLGSSFGLLFYRQLNDQPFlqkAVFFLLGLTLLTLLFLATLPMLLKFGIKLSQRYLGKWKRVE 228
                      ******999999999999*******************999999999887788744444444444445555566777777777778888888877 PP

  LPG_synthase_TM 186 arfarklasakrklvlasprrlllafllslliwllealtlylllralgvdvslallllillaltlvgalpplPgGlGvrEaalalllallGvsa 279
                      + + +  +  +   +   ++r+l a +ls++++l+++l++ ++ ++l+ +++l+ll+++++ +tl++ lp++++GlGvrE+a++ll++++G+++
       CCG91436.1 229 QVLTDIVHVLD--VFKYCYGRILAACILSIGVHLSAILMFVFVSASLHMHLPLWLLAVVMVEITLIVSLPISISGLGVREGAVVLLFGSYGINP 320
                      66666665554..56667889************************************************************************* PP

  LPG_synthase_TM 280 aealaaallyrlitlylllllG 301
                      ++al ++ll   + + l+ l+G
       CCG91436.1 321 ELALGFSLLSFSVGI-LWSLIG 341
                      *********999988.777766 PP

>> Arv1  Arv1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.12     1e+03     153     182 ..      69     100 ..       6     125 .. 0.44
   2 ?    9.1   3.3   0.00014       1.3     117     202 ..     182     284 ..     172     291 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.12
        Arv1 153 a....lllkykkarlnalltalllssyaklfpil 182
                 +    l+l ++   l   l+++l s   kl++ +
  CCG91436.1  69 QsidlLFLGFA--FLFCALQTILSSLRWKLLLFA 100
                 02111111111..222233333334444444444 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00014
        Arv1 117 akelkqylfflvlalletlvfhlsillllslesslsa.lllky................kkarlnalltalllssyaklfpilmlIWeydltalalsli 198
                 +  l++ +ffl+  +l tl+f +++ +ll++  +ls+  l k+                +k+ +  +l+a +ls  ++l  ilm++       ++l l 
  CCG91436.1 182 QPFLQKAVFFLLGLTLLTLLFLATLPMLLKFGIKLSQrYLGKWkrveqvltdivhvldvFKYCYGRILAACILSIGVHLSAILMFVFVSASLHMHLPLW 280
                 56678999******************999998888887444556667777777777777888899999999**************98876444444333 PP

        Arv1 199 kllv 202
                  l+v
  CCG91436.1 281 LLAV 284
                 3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2496.33
//
Query:       CCG91437.1  [L=308]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-77  260.4   0.0    1.7e-77  260.1   0.0    1.0  1  SAM_adeno_trans  S-adenosyl-l-methionine hydroxide adenosyltr


Domain annotation for each model (and alignments):
>> SAM_adeno_trans  S-adenosyl-l-methionine hydroxide adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.1   0.0   9.4e-82   1.7e-77       1     232 [.      47     302 ..      47     304 .. 0.91

  Alignments for each domain:
  == domain 1  score: 260.1 bits;  conditional E-value: 9.4e-82
                      EEEEESSTSSSSHHHHHHHHHHHH-TTSEEEEEES-S-TT-HHHHHHHHHHHHGGS-TTEEEEEE--TTTTSS--EEEEEETTS.EEEEESSST CS
  SAM_adeno_trans   1 itLlTDFGlkdpyvgamkgvilsiapdarivDitHdippfdvreaaflLaaalpyfpkgtvhlavVDpgvgterralvveakgg.yfvgPDNGl 93 
                      i L+TDFG kd+yv+++kgvi+si+p ar++D+ H+i+p+++ eaafl+ ++  +fp+g++++avVDpgvgter+ +++e+k + +++gPDNG+
       CCG91437.1  47 IGLITDFGSKDHYVAQLKGVIYSIDPFARVIDLNHEIEPYNLPEAAFLIDQSTLEFPAGSIFVAVVDPGVGTERKGILLETKAHkFYIGPDNGI 140
                      779*********************************************************************************888******* PP

                      THHHH...SEEEEEEGSSCC......--TS-HHHHTHHHHHHHHHCT--GGGCSEEESGGGS-SSS.....E.CSCEEEEEEEE-TTS-EEEEE CS
  SAM_adeno_trans  94 ltlal...lleeaveieeee......ssatFhgrDvFapvaarlaagvsleelgeeldpeelvrle.....e.derlegevlyvDrFGNvitni 172
                      ++l++   +++e+++++++e      +s+tFhgrD+F pvaa+l++g ++++ g+++++e+l  l+     +  ++++g++ly+D+FGN+itni
       CCG91437.1 141 FSLVVereGIAEVWTLDKKEiwkrqePSYTFHGRDIFGPVAAYLSKGGKPHNTGSRIPKENLHLLNfsppsTiGQSVSGQILYIDHFGNIITNI 234
                      **999888779******88899999999*******************************9997777767653678899**************** PP

                      E...EHHHHHTTC.EE........EEEEESSGGGSTTTSEEEEE-TTSEEEEEETTC-HHHHHT--TT- CS
  SAM_adeno_trans 173 skelleelekerk.va........klkkvetyaevaegellalvnssglleiavnkgsaaellglkvgd 232
                      +  +++ ++++ + v+        ++  v+ty+e++ g++ +l nssg+lei+  +gsaa+ll+ + g+
       CCG91437.1 235 PMGMASWIKEG-NlVRvqigkmtlAAPCVKTYSELPLGKIGVLYNSSGYLEISSSQGSAAKLLKAQSGN 302
                      *8888766554.44225567788644456***********************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2041.32
//
Query:       CCG91438.1  [L=610]
Description: GTP-binding protein TypA/BipA homolog [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-57  194.5   0.0    1.8e-57  194.0   0.0    1.2  1  GTP_EFTU         Elongation factor Tu GTP binding domain
    1.1e-19   70.3   0.0    2.4e-19   69.1   0.0    1.6  1  EFG_C            Elongation factor G C-terminus
    3.8e-12   46.4   2.0    5.5e-12   45.9   0.6    2.0  2  GTP_EFTU_D2      Elongation factor Tu domain 2
    6.6e-07   29.4   0.1    2.4e-06   27.6   0.1    2.0  2  MMR_HSR1         50S ribosome-binding GTPase
    1.9e-05   24.3   0.1    0.00051   19.6   0.1    3.0  3  FeoB_N           Ferrous iron transport protein B
     0.0008   19.3   0.3       0.16   11.8   0.1    2.4  2  RsgA_GTPase      RsgA GTPase
     0.0026   17.1   0.1     0.0046   16.3   0.1    1.3  1  Septin           Septin
     0.0069   15.8   0.2      0.018   14.5   0.2    1.8  1  SRPRB            Signal recognition particle receptor beta su
  ------ inclusion threshold ------
      0.012   15.0   0.1       0.04   13.4   0.0    1.8  2  Arf              ADP-ribosylation factor family
      0.021   15.5   0.1      0.063   14.0   0.0    1.8  1  NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21
       0.05   13.8   0.0        0.1   12.8   0.0    1.5  1  Roc              Ras of Complex, Roc, domain of DAPkinase
       0.18   11.4   0.0       0.34   10.5   0.0    1.5  1  Ras              Ras family


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.0   0.0   1.2e-60   1.8e-57       2     194 .]       3     201 ..       2     201 .. 0.93

  Alignments for each domain:
  == domain 1  score: 194.0 bits;  conditional E-value: 1.2e-60
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEE CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlv 100
                 +i ni+ii+hvDhGKtTL+d+Ll+++g  +++++ +  er++D+++ Ere+giTi ++++s++  +++y+inliDtPGH+dF +ev+r+l ++Dg++l+
  CCG91438.1   3 KIKNIAIIAHVDHGKTTLVDQLLKQSGSFRQNQQLT--ERIMDSMDLEREKGITIRAKNASFQ--YENYKINLIDTPGHADFGSEVERSLGMVDGVLLL 97 
                 789***************************966665..599**********************..********************************** PP

                 EETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTB................THHH CS
    GTP_EFTU 101 vdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkge................gvkt 183
                 vdaveG+++qt+ vl+ al++++ + v+iNK+Dr++a+  ++ +++ + +      le  + +++ ++pv+++Sa++g                 g+k+
  CCG91438.1  98 VDAVEGPQAQTKFVLKKALTQNLSPLVLINKIDRANAQPIKVLDQIFELF------LELEASDKQLDFPVLYVSAKEGIalkewkkeisvedkknGFKP 190
                 ***********************************************999......77777777789************7777777777777776677* PP

                 HHHHHHHHSHH CS
    GTP_EFTU 184 llealvellps 194
                 l+ea+ +++ps
  CCG91438.1 191 LFEAILTHIPS 201
                 ********996 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   1.6e-22   2.4e-19       2      85 ..     402     484 ..     401     487 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 1.6e-22
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHH CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdk 85 
                 l EP++ + +++p+e++g v++ ls+r G+i  m++  ++rv +e  iP+++ligf+te+ +lT+Geg+ s+ f++Y + +g++
  CCG91438.1 402 LFEPYELLSVDIPQECLGPVMEMLSKRGGNIRMMRNS-QQRVFMETLIPTRGLIGFETEFVNLTRGEGYASHLFHEYGPKQGEI 484
                 78***********************************.***************************************9998875 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.6   3.7e-15   5.5e-12       1      73 [.     224     293 ..     224     294 .. 0.96
   2 ?   -2.5   0.0       4.7   7.1e+03      14      28 ..     427     439 ..     427     447 .. 0.73

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 3.7e-15
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  G++a g+++sG++k+G  +     ++s+k  ++++++++ f++ e+++  +a aG+iv+i gle+ + +Gdt+
   CCG91438.1 224 GRIAIGKIFSGKIKVGSPLFS--YQKSGKTSRGTVTAILGFKGLERIELSEASAGDIVGIAGLEE-VYIGDTI 293
                  89*******************..888888899*********************************.9*****9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.7
                  ETTEEEEEECTCTTS CS
  GTP_EFTU_D2  14 kkGdevrilgndtsk 28 
                  k+G ++r+++n+  +
   CCG91438.1 427 KRGGNIRMMRNS--Q 439
                  899999*96643..3 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   1.6e-09   2.4e-06       2     112 ..       7     126 ..       6     128 .. 0.70
   2 ?   -2.7   0.0       3.9   5.9e+03      46      58 ..     350     362 ..     332     388 .. 0.65

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.6e-09
                 EEEEESTTSSHHHHHHHHHT................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvv 83 
                 +ai+ +   GK+tL+ +l++                +    ++++g T+  + + +++++ +i+l+DtpG         ++g ++++    +d +ll+v
  CCG91438.1   7 IAIIAHVDHGKTTLVDQLLKqsgsfrqnqqlterimDSMDLEREKGITIRAKNASFQYENYKINLIDTPG-H------ADFGSEVERSLGmVDGVLLLV 98 
                 89999999***********766677777766654433668888899999999999999999*********.2......34666666555548******* PP

                 ETTTTCSHHHHHHHHHH.HHHTTSEEEEEE CS
    MMR_HSR1  84 daseeklkpldeeleel.leeakkplilvl 112
                 da  e+ +++ + + +  l+++  p ++++
  CCG91438.1  99 DAV-EGPQAQTKFVLKKaLTQNLSP-LVLI 126
                 *99.545555555444404444444.4444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.9
                 EEEEEEECGGCSS CS
    MMR_HSR1  46 keielvDtpGlie 58 
                  ++e +D+pG +e
  CCG91438.1 350 LRVEETDVPGTFE 362
                 4567789999765 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.45   6.7e+02       2      22 ..       6      26 ..       5      31 .. 0.84
   2 !   19.6   0.1   3.4e-07   0.00051      32     156 .]      52     179 ..      49     179 .. 0.78
   3 ?   -0.6   0.0      0.58   8.7e+02      48      62 ..     351     365 ..     342     388 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.45
                EEEEEESTTSSHHHHHHHHHT CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltg 22
                ++a++   + Gkttl+++l +
  CCG91438.1  6 NIAIIAHVDHGKTTLVDQLLK 26
                6888999999*******9976 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 3.4e-07
                 TSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE..... CS
      FeoB_N  32 GvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnlernLyLtlqllelgvpvvlalnmideaekkgiei..... 125
                 G+t+  k++++++++++++++D PG  ++       +v r++ + + + ++v+ v+  + + +++L   l++   p ++ +n+id a+++ i++     
  CCG91438.1  52 GITIRAKNASFQYENYKINLIDTPGHADFG-----SEVERSLGMVDGVLLLVDAVEGPQAQTKFVLKKALTQNLSP-LVLINKIDRANAQPIKVldqif 144
                 9************************97775.....45667776777777888899999999999998887776555.5679*********998732222 PP

                 ....-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH CS
      FeoB_N 126 ....dlkkLsekLgvpvvktsakkkegieellkai 156
                     +l++ +++L++pv+ +sak++  ++e +k+i
  CCG91438.1 145 elflELEASDKQLDFPVLYVSAKEGIALKEWKKEI 179
                 22223445568999999999999999999888765 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.58
                 EEEEEE----SSSSS CS
      FeoB_N  48 eveivDlPGiYslsa 62 
                 +ve +D+PG++++s 
  CCG91438.1 351 RVEETDVPGTFEISG 365
                 66779******9975 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.012        18     110     165 ..      15      81 ..       3      83 .. 0.68
   2 !   11.8   0.1   0.00011      0.16      20      97 ..      96     179 ..      85     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.012
                  SSHHHHHHHHCTT......-----S--..------------SEEEEEETT...TEEEESS-SSSS-- CS
  RsgA_GTPase 110 vGKStLinallpe......lelktgev..seklgrGkhTTtavellelae...gglliDtPGfreld 165
                   GK+tL+++ll +      +++ t+ +  s +l+r k  T +++  +++    +  liDtPG   ++
   CCG91438.1  15 HGKTTLVDQLLKQsgsfrqNQQLTERImdSMDLEREKGITIRAKNASFQYenyKINLIDTPGHADFG 81 
                  59********99878888767777777333445566666665555555542245679*****87765 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00011
                  EEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH.........HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  20 livvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeee.........eleelkeelealgyevllvsaktkegleelkell 97 
                  l+v +++ p+ ++++   +L  a +++++p++++nKiD ++ +           + el++  ++l+++vl+vsak++ +l+e k+++
   CCG91438.1  96 LLVDAVEGPQAQTKF---VLKKALTQNLSPLVLINKIDRANAQPikvldqifeLFLELEASDKQLDFPVLYVSAKEGIALKEWKKEI 179
                  445566666666655...47788899***************999999998876677888899999*********9999888877765 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   3.1e-06    0.0046       7      75 ..       7      80 ..       4      91 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.1e-06
                EEEEEBTTSSCCCCCCTTSSSS----.......--------------S-EEEEEEEEETTCEEEEEEEE---BSSS CS
      Septin  7 lmvvGesglGkttlintlfetdliee.......ekleeasekkkktveikkkkvvieedgvklnltviDtpgfGda 75
                + ++ +   Gkttl++ l++++   +       + +++   + +k ++i++k+++ + ++   ++++iDtpg+ d+
  CCG91438.1  7 IAIIAHVDHGKTTLVDQLLKQSGSFRqnqqlteRIMDSMDLEREKGITIRAKNASFQYEN--YKINLIDTPGHADF 80
                667788899*********998765442333432333333335556666666666665554..45678*****8775 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   1.2e-05     0.018       5      84 ..       6      99 ..       2     149 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-05
                EEEEE-STTSSHHHHHHHHHHS....................S---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEE CS
       SRPRB  5 avllvGlsdsGKTslftrLttd....................svkktvtSqessaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvD 84
                ++ ++   d GKT+l  +L+++                    + +k  t  +++a+ ++   ++ k++liD PGh  + +++  +      + g++ +vD
  CCG91438.1  6 NIAIIAHVDHGKTTLVDQLLKQsgsfrqnqqlterimdsmdlEREKGITIRAKNASFQY---ENYKINLIDTPGHADFGSEVERS---LGMVDGVLLLVD 99
                577888999**********9998999888876554444443333333333344444444...899************99998766...444555555565 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3     2e+03      25      37 ..      15      27 ..       5      35 .. 0.82
   2 ?   13.4   0.0   2.7e-05      0.04      45     142 ..      54     146 ..      39     181 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
                SSHHHHHHHHHHS CS
         Arf 25 aGKtTilkklkle 37
                 GKtT++ +l ++
  CCG91438.1 15 HGKTTLVDQLLKQ 27
                59*****999765 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.7e-05
                 SSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTG CS
         Arf  45 TigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgl 142
                 Ti  +  + +++n+k+++ D  G+    +  ++ +  +d+v+ +vD+++       +++ k +l++   ++   lvl NK+D ++a   + l ++ +l
  CCG91438.1  54 TIRAKNASFQYENYKINLIDTPGHADFGSEVERSLGMVDGVLLLVDAVEGP-----QAQTKFVLKKALTQNLSPLVLINKIDRANAQPIKVLDQIFEL 146
                 777778899*************************************98765.....445566777777889999***********9988877776665 PP

>> NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.2e-05     0.063       5      62 ..     202     262 ..     200     269 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.2e-05
  NADH-u_ox-rdase   5 pvIdsdPsfsrvlrnfrpsDYvkaaaitaafplallaleklsPsvagka....mtlagligf 62 
                      p + +dP f+  ++n+  sDY+  +ai  +f   + +++ l + + +++     t+++++gf
       CCG91438.1 202 PTVSQDPAFKLLVANLDYSDYLGRIAIGKIFSGKIKVGSPLFSYQ-KSGktsrGTVTAILGF 262
                      7799***********************99**99999998655322.2223455555555555 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.8e-05       0.1       6     119 ..      11     130 ..       6     131 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.8e-05
                 SSTTSSHHHHHHCHCT..-CCC-EEETTT....TEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHH CS
         Roc   6 GdsgvGKtsllkrfve..dkfsekeksti....gvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeW 98 
                      GKt+l++++++  ++f+++++ t     ++d+ +++  +i+  + + + +++k+n+ Dt G+ +f s  +  l   + ++l++d+ +  ++++ 
  CCG91438.1  11 AHVDHGKTTLVDQLLKqsGSFRQNQQLTErimdSMDLEREKGITIRAKNASFQYENYKINLIDTPGHADFGSEVERSLGMVDGVLLLVDAVEGPQAQTK 109
                 55678*********983345666666654222245565666667877777788899***************9888888888888888886665555444 PP

                 HHHHHHHCSSS-EEEEEE-TT CS
         Roc  99 lkelkkvagkspvilvgnkiD 119
                 +   k+ +++   ++++nkiD
  CCG91438.1 110 FVLKKALTQNLSPLVLINKID 130
                 444455566666677778887 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00023      0.34       5     124 ..      10     139 ..       6     182 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00023
                 EESTTSSHHHHHHHHHH..SSCSSSCTTTSSEE............EEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHT CS
         Ras   5 vGdsavGKtslllrfvk..dkFkeeyesTigvd............fytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfen 89 
                 +     GKt+l+ +  k  ++F+++++ T  +                k+ +++ +++k+++ DT G  +f s  e ++  ++g+ll+ d  +    + 
  CCG91438.1  10 IAHVDHGKTTLVDQLLKqsGSFRQNQQLTERIMdsmdlerekgitIRAKNASFQYENYKINLIDTPGHADFGSEVERSLGMVDGVLLLVDAVEGPQAQ- 107
                 555666888888888762246877777774332245553333333445555555999***************************99987765544322. PP

                 HHHHHHHHHHHSTTTSEEEEEEETTTGGGG-SS-H CS
         Ras  90 vkkwveeikrvaeenvpivLvGnKvDleekravst 124
                  +k+v  +k+  ++n++ +++ nK+D ++ + ++ 
  CCG91438.1 108 -TKFV--LKKALTQNLSPLVLINKIDRANAQPIKV 139
                 .3333..2233333344444458888888665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3827.71
//
Query:       CCG91439.1  [L=180]
Description: Amidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-41  141.0   0.0    5.1e-41  140.8   0.0    1.0  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.8   0.0   2.8e-45   5.1e-41       3     166 ..       4     162 ..       2     171 .. 0.96

  Alignments for each domain:
  == domain 1  score: 140.8 bits;  conditional E-value: 2.8e-45
  Isochorismatase   3 lvviDmqndfveegvkeseeisavveninkllkaarkagipviftrdvheleevkgdlderkaaphfkpgttgaelvpelaplegdvvvdKtrf 96 
                      +v++Dm +df+ +g  +s e+++++e i+kl  aar+++ pvi++ d h       d++   + +h  +g++ga +++elap + d+v++K+++
       CCG91439.1   4 VVIVDMLEDFI-GGKLASREAAKIIEPIRKLSIAARAKKKPVIYVGDAHL----PSDPEMIIWGEHAMKGSPGASIIKELAPSPADIVLEKRTY 92 
                      79*********.**************************************....999************************************* PP

  Isochorismatase  97 safagtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlkqa 166
                      s+f +t+ld +L++l+++ti+l+G++t++C+++ta da+ l+y+++v+ D+v+a+sp++++ +l+ l + 
       CCG91439.1  93 SGFRETGLDLVLRSLKVDTIILVGLHTHLCIRHTAADAFFLNYHTIVPVDCVCAFSPQEQESGLEYLHKF 162
                      *****************************************************************99754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1235.16
//
Query:       CCG91440.1  [L=293]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2100.33
//
Query:       CCG91441.1  [L=477]
Description: TPR repeats containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-09   38.9   0.0      6e-05   23.6   0.0    2.5  2  Asp_protease_2   Aspartyl protease
    4.4e-07   30.3   0.9    2.8e-06   27.8   0.5    2.1  2  TPR_19           Tetratricopeptide repeat
      5e-06   27.0   0.0     0.0097   16.4   0.0    2.6  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease
    1.8e-05   24.5   2.1     0.0089   16.1   0.0    2.9  3  TPR_2            Tetratricopeptide repeat
    2.6e-05   24.8   0.1      0.011   16.4   0.0    2.3  2  TPR_16           Tetratricopeptide repeat
    0.00022   20.9   0.1      0.038   13.8   0.0    2.6  2  TPR_1            Tetratricopeptide repeat
     0.0022   18.3   0.4          2    8.7   0.1    2.4  2  TPR_12           Tetratricopeptide repeat
     0.0036   18.0   2.5      0.061   14.2   0.0    3.1  3  TPR_14           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.071   12.9   0.6         15    5.4   0.0    3.2  3  TAXi_C           Xylanase inhibitor C-terminal
      0.079   13.2   0.0       0.15   12.3   0.0    1.4  1  ANAPC3           Anaphase-promoting complex, cyclosome, subun
      0.087   13.2   0.0         25    5.6   0.0    2.6  2  TPR_17           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.7e-08     6e-05       1      89 [.     175     276 ..     175     277 .. 0.81
   2 !   12.9   0.0     8e-05      0.13       2      77 ..     330     406 ..     329     430 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 3.7e-08
  Asp_protease_2   1 vpvtinGkpvrfllDTGasttlispelaekl....glkvreseltvrvsgagg.evkarlvrldslklggltlknvpalvld..........lge 80 
                     +pv+i  k+v+++lDT +s t ++++l ek      l+v ++  +  ++ ag+ +  ar++ ++s+++g+++++++p+l +             +
      CCG91441.1 175 IPVKICRKKVSLFLDTRSSFTALDRDLYEKVkeirLLDVIAL--QFWFNFAGKwSIRARTGIIQSMQIGNMKIERIPILLARwkgtylfprhVPQ 267
                     6899999*********************99864333344444..6778****94599********************999998777777654445 PP

  Asp_protease_2  81 eidglLGmd 89 
                      ++g++G+d
      CCG91441.1 268 IVHGVIGTD 276
                     668888887 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 8e-05
  Asp_protease_2   2 pvtinGk.pvrfllDTGa..sttlispelaeklglkvreseltvrvsgaggevkarlvrldslklggltlknvpalvld 77 
                     +++in++  + f++D+     + + s+++ ek  l++++    + +   gg+ ++ +  ++++++g+++++nv+a + +
      CCG91441.1 330 QGKINDQeGIFFMVDSLDvgRAFTFSEWMLEKFHLPRYGG--WMIGLRRGGRYPSIYTIVPKIQIGNIVMENVKADIGK 406
                     778888856688888743213589999**********996..4555555778888888899**************9987 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00064         1       2      51 ..      55     104 ..      54     106 .. 0.91
   2 !   27.8   0.5   1.7e-09   2.8e-06       2      53 ..      89     140 ..      88     141 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00064
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdal 51 
                 + eg+ ++A++   +a   dp+++  +  L  + l  +ql++A + L++ 
  CCG91441.1  55 FHEGRIEAAARVAFEASLRDPQDWKSLKILGWVALMKNQLEDASRFLQKG 104
                 6789999999999999999****************************975 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 1.7e-09
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpe 53 
                 l+ +++++A ++l++ l  +p++ e + lLA++++  g l++  +lL+++ e
  CCG91441.1  89 LMKNQLEDASRFLQKGLRLNPEDTEMKRLLAICYYREGKLEQSADLLNEIRE 140
                 77899*******************************************9975 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     6e-06    0.0097       1      91 [.     175     279 ..     175     280 .. 0.75
   2 !    8.1   0.0    0.0025         4       2      77 ..     330     406 ..     329     433 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6e-06
                      EEEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB....TT--EE-TT.STT-EEEEEEEEEE.EETTEEEEEEEEEESSSSE........ CS
  gag-asp_proteas   1 vkvkingkpvkflvDTGAsstiiseelaerlglsrkedk..gkvevktang.eveakrvrldsvkiggielrnvsavvlegelddl........ 83 
                      ++vki  k+v +++DT  s t++ ++l e+++  r+ d    +++++ a   +++a+++ ++s++ig+++++ ++++ ++ + + l        
       CCG91441.1 175 IPVKICRKKVSLFLDTRSSFTALDRDLYEKVKEIRLLDViaLQFWFNFAGKwSIRARTGIIQSMQIGNMKIERIPILLARWKGTYLfprhvpqi 268
                      6899999************************8555444411456666666656799******************99988755443344444555 PP

                      ...EEEHHHHH CS
  gag-asp_proteas  84 ...LLGldfLk 91 
                         ++G+d+++
       CCG91441.1 269 vhgVIGTDMMR 279
                      55566666665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0025
                      EEEETTE.EEEEEEET..T-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEEEEEE.EETTEEEEEEEEE CS
  gag-asp_proteas   2 kvkingk.pvkflvDT..GAsstiiseelaerlglsrkedkgkvevktangeveakrvrldsvkiggielrnvsavvle 77 
                      ++kin++  + f+vD+       + se + e+ +l+r    g +   +  g+     + +++++ig+i+++nv+a + +
       CCG91441.1 330 QGKINDQeGIFFMVDSldVGRAFTFSEWMLEKFHLPRYG--GWMIGLRRGGRYPSIYTIVPKIQIGNIVMENVKADIGK 406
                      678888844667777744245556788999999999987..5777777888888888999*************998765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       4.6   7.5e+03      12      28 ..      55      72 ..      54      73 .. 0.60
   2 !   16.1   0.0   5.4e-06    0.0089       4      34 .]      81     111 ..      78     111 .. 0.92
   3 !    7.1   0.2     0.004       6.5       6      26 ..     117     137 ..     115     140 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.6
       TPR_2 12 yklgdy.eeAleafekAl 28
                ++ g+  + A+ afe++l
  CCG91441.1 55 FHEGRIeAAARVAFEASL 72
                667777455666666665 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 5.4e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                 l  lG++++ ++++e+A ++++k l+l+P++
  CCG91441.1  81 LKILGWVALMKNQLEDASRFLQKGLRLNPED 111
                 6679*************************86 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.004
       TPR_2   6 nlGlayyklgdyeeAleafek 26 
                  l+ +yy+ g++e+ ++++++
  CCG91441.1 117 LLAICYYREGKLEQSADLLNE 137
                 69*************999887 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00065       1.1      11      53 ..      58      97 ..      53     103 .. 0.88
   2 !   16.4   0.0   6.4e-06     0.011       7      61 ..      88     139 ..      84     145 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00065
      TPR_16 11 gdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53
                g+ ++Aa+++ +a  rd   P+++ +l  lg++al ++ l++A
  CCG91441.1 58 GRIEAAARVAFEASLRD---PQDWKSLKILGWVALMKNQLEDA 97
                89999999997777788...89******************998 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 6.4e-06
      TPR_16   7 alragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 al  ++ +dA + l+  l+++   P++ e+  ll+ +++r g l+  a+l+++  
  CCG91441.1  88 ALMKNQLEDASRFLQKGLRLN---PEDTEMKRLLAICYYREGKLEQSADLLNEIR 139
                 55668899999999*******...*************************999974 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.3e-05     0.038       2      34 .]      79     111 ..      78     111 .. 0.93
   2 ?    4.4   0.1     0.022        36       7      23 ..     118     134 ..     116     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 k+l+ lG + + ++++++A  + +k L+lnP++
  CCG91441.1  79 KSLKILGWVALMKNQLEDASRFLQKGLRLNPED 111
                 678889*************************86 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.022
                 HHHHHHHTT-HHHHHHH CS
       TPR_1   7 lGnayfklgkydeAley 23 
                 l+ +y++ gk+++  + 
  CCG91441.1 118 LAICYYREGKLEQSADL 134
                 89**********97765 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0032       5.2      47      74 ..      80     107 ..      61     110 .. 0.89
   2 !    8.7   0.1    0.0012         2       8      33 ..     117     142 ..     112     148 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0032
      TPR_12  47 tlrnLgrlyralgryeeAlelleealai 74 
                 +l  Lg++ ++ +++e+A ++l++ l++
  CCG91441.1  80 SLKILGWVALMKNQLEDASRFLQKGLRL 107
                 6778*********************998 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0012
      TPR_12   8 nlaavlrrlgrydeAlellekaleia 33 
                  la +++r g+++++ +ll++ +e +
  CCG91441.1 117 LLAICYYREGKLEQSADLLNEIREGW 142
                 45555555555555555555555555 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.36   5.8e+02      11      35 ..      54      78 ..      52      83 .. 0.72
   2 !   14.2   0.0   3.8e-05     0.061       4      42 ..      81     119 ..      78     121 .. 0.91
   3 ?    4.4   0.1     0.051        83       4      29 ..     115     140 ..     113     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.36
      TPR_14 11 llalGdpdeAia.llrralalaPdda 35
                l++ G+ ++A++ ++++ l+ +P+d+
  CCG91441.1 54 LFHEGRIEAAARvAFEASLR-DPQDW 78
                67889999888835555555.88887 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.8e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 l+ l+++ l   ++++A + l++ l+l+P+d e  +lla
  CCG91441.1  81 LKILGWVALMKNQLEDASRFLQKGLRLNPEDTEMKRLLA 119
                 66799999999**************************99 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.051
      TPR_14   4 llalaeallalGdpdeAiallrrala 29 
                  ++la  +++ G+++++++ll+++ +
  CCG91441.1 115 KRLLAICYYREGKLEQSADLLNEIRE 140
                 5789999***************9865 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.009        15      30      54 ..     183     207 ..     169     214 .. 0.89
   2 ?   -0.4   0.0      0.52   8.4e+02     135     157 ..     270     292 ..     260     296 .. 0.84
   3 ?    3.4   0.2     0.037        60     136     157 ..     424     445 ..     416     449 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.009
                 --SEEE-SSSSSEEE-HHHHHHHHH CS
      TAXi_C  30 sggtvlstgtpytvletdvYralvk 54 
                 +    l+t +++t l +d Y+++++
  CCG91441.1 183 KVSLFLDTRSSFTALDRDLYEKVKE 207
                 56789****************9986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.52
                 SEEE-HHHHBTS-EEEETTTTEE CS
      TAXi_C 135 avviGglqlednllvFDleksrl 157
                 + viG+ +++++ +  D  k++l
  CCG91441.1 270 HGVIGTDMMRQFNVTIDYPKKEL 292
                 679**************999887 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.037
                 EEE-HHHHBTS-EEEETTTTEE CS
      TAXi_C 136 vviGglqlednllvFDleksrl 157
                 +++G+  l+ +++ FD ++++l
  CCG91441.1 424 AIVGNSFLKSFIVTFDFQNMVL 445
                 699***************9988 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.2e-05      0.15      18      81 ..      73     137 ..      56     138 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.2e-05
                 HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  18 aetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 +++++ +++  l+ + +  +q + A ++l+k  +ln+++ +   l+A c++  +k+e+  ++L +
  CCG91441.1  73 RDPQDWKSLKILGWVALMKNQLEDASRFLQKGlRLNPEDTEMKRLLAICYYREGKLEQSADLLNE 137
                 67777778888888899999999999999999999999999999999999999999998888865 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.021        35       8      32 ..      73      97 ..      67      99 .. 0.90
   2 ?    5.6   0.0     0.015        25       2      31 ..     101     130 ..     100     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.021
      TPR_17  8 ldPnnadaynnLAelllknGdlmtA 32
                +dP +++++  L+++ l++++l++A
  CCG91441.1 73 RDPQDWKSLKILGWVALMKNQLEDA 97
                8*********************998 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.015
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmt 31 
                 ++k l+l+P + +   +LA ++++ G+l++
  CCG91441.1 101 LQKGLRLNPEDTEMKRLLAICYYREGKLEQ 130
                 6899*******************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3706.61
//
Query:       CCG91442.1  [L=316]
Description: Protoheme IX farnesyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-51  172.6  22.6    1.1e-50  172.3  22.6    1.1  1  UbiA             UbiA prenyltransferase family
  ------ inclusion threshold ------
      0.075   12.8   0.9        1.2    8.9   0.1    2.4  2  Gly-zipper_YMGG  YMGG-like Gly-zipper
        5.7    7.2  10.4        1.6    8.9   0.3    2.9  3  PsbK             Photosystem II 4 kDa reaction centre compone
        6.1    6.9   7.6        5.6    7.0   0.4    3.0  3  Gly-zipper_Omp   Glycine zipper


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.3  22.6   2.5e-54   1.1e-50       2     250 ..      50     298 ..      49     301 .. 0.82

  Alignments for each domain:
  == domain 1  score: 172.3 bits;  conditional E-value: 2.5e-54
        UbiA   2 lipalvglalaaggspdlllllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnpltallgllal 100
                 l ++++g++la+g+s+d+  +l +++gt l+aa+a +lN++++   D++m+rt++RPl+++r+   ea i+ai+ +i+g+l l+ + n+ +a l+ll+l
  CCG91442.1  50 LTTTFFGFVLASGSSLDIGKALHVVVGTGLVAASAAVLNEVLESRQDSKMSRTKDRPLPAHRLDAIEAAITAIIGAIVGFLYLWNFSNLMAASLALLSL 148
                 899************************************************************************************************ PP

        UbiA 101 lly.vvYtglrlKrrtllgtvvggiafglppllgwaavtgsl.sllalllalavflltwaialandlrdregDrkagiktlpvvl..Grkaarillall 195
                 ++y  +Yt  +lK++++++t++g+i+++lpp++g+aa+  ++ ++++++l++++f++++++++a ++  r +++kag+k+l+vv   G+k +++   ll
  CCG91442.1 149 IVYvGIYT--PLKQISPWNTWIGAISGALPPVIGYAAQEANIlHVTPIFLFCILFFWQMPHFYAIAWIYRSDYKKAGFKMLVVVDssGKKLTLQ--SLL 243
                 ********..***************************999988555555555555555555555555566666************777777777..656 PP

        UbiA 196 lavllla..llllllalllllylllalllaalallraarlvrrrdakkaakfflfls 250
                  ++ll++  ll +++ + +llyl+ +lll+ l++l  a +++ +++ +aa++++f +
  CCG91442.1 244 FCFLLMMasLLPYFTHQAGLLYLWGSLLLGMLFFLS-ALFLHLKRNLTAARLLFF-A 298
                 666665565556666666666666666666666555.666666666666666634.4 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00028       1.2       6      40 ..     116     128 ..      72     131 .. 0.75
   2 ?    2.2   0.1     0.034   1.5e+02       9      16 ..     168     175 ..     165     187 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00028
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Gly-zipper_YMGG   6 GAaiGAaaGAvvGaliGsgggkGAaiGAaaGalaG 40 
                                             Aai A +Ga++G
       CCG91442.1 116 E----------------------AAITAIIGAIVG 128
                      3......................555555555555 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.034
                      XXXXXXXX CS
  Gly-zipper_YMGG   9 iGAaaGAv 16 
                      iGA++GA+
       CCG91442.1 168 IGAISGAL 175
                      77777774 PP

>> PsbK  Photosystem II 4 kDa reaction centre component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.3   0.00036       1.6      19      35 ..     188     204 ..     180     207 .. 0.91
   2 ?   -4.8   0.7         4   1.8e+04      26      31 ..     275     280 ..     274     281 .. 0.71
   3 ?    4.9   0.2    0.0067        30      23      34 ..     303     314 ..     301     316 .] 0.91

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00036
        PsbK  19 vLPiiPllflllafVWQ 35 
                 +L ++P++ + + f WQ
  CCG91442.1 188 ILHVTPIFLFCILFFWQ 204
                 899************** PP

  == domain 2  score: -4.8 bits;  conditional E-value: 4
        PsbK  26 lfllla 31 
                 lf+l a
  CCG91442.1 275 LFFLSA 280
                 888866 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0067
        PsbK  23 iPllflllafVW 34 
                  Pllf lla  W
  CCG91442.1 303 LPLLFTLLAICW 314
                 5*********** PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.14   6.3e+02      18      37 ..      64      86 ..      54      94 .. 0.70
   2 ?    7.0   0.4    0.0013       5.6      22      35 ..     115     128 ..     109     131 .. 0.72
   3 ?    2.1   0.1     0.044     2e+02      30      43 ..     168     184 ..     166     187 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.14
  Gly-zipper_Omp 18 g...grgtGaliGAavGaavGgl 37
                    +   g +   ++G+++ aa+ ++
      CCG91442.1 64 SldiGKALHVVVGTGLVAASAAV 86
                    34555678899999998887665 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0013
  Gly-zipper_Omp  22 tGaliGAavGaavG 35 
                     + a+i A++Ga+vG
      CCG91442.1 115 IEAAITAIIGAIVG 128
                     56777888888887 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.044
  Gly-zipper_Omp  30 vGaavGg...liGaamd 43 
                     +Ga++G+   +iG+a +
      CCG91442.1 168 IGAISGAlppVIGYAAQ 184
                     78888887777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       995  (0.0554967); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 2342.59
//
Query:       CCG91443.1  [L=349]
Description: Heme A synthase, cytochrome oxidase biogenesis protein CtaA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-32  113.6  26.2      3e-26   92.3  20.2    2.0  2  COX15-CtaA  Cytochrome oxidase assembly protein
    0.00018   21.2  27.5     0.0034   17.0  13.0    2.6  2  DUF998      Protein of unknown function (DUF998)
  ------ inclusion threshold ------
       0.15   12.1   0.3       0.42   10.6   0.3    1.7  1  DUF543      Domain of unknown function (DUF543)


Domain annotation for each model (and alignments):
>> COX15-CtaA  Cytochrome oxidase assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.3   1.4e-09   8.2e-06       4      39 ..      10      45 ..       7      55 .. 0.89
   2 !   92.3  20.2     5e-30     3e-26      77     322 ..      60     312 ..      50     314 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.4e-09
  COX15-CtaA  4 lllvlllvllvvvlGgltRltdsGlsitdWppctGa 39
                  ++++ v+l++++G+++  t+sG+ ++dWp+ +G 
  CCG91443.1 10 SAILTFFVFLLIAVGAMVTSTNSGMAVPDWPTTFGY 45
                5678999************************99986 PP

  == domain 2  score: 92.3 bits;  conditional E-value: 5e-30
  COX15-CtaA  77 wiEwiHRllgrllGllilvpllyflakkrisrelkkllllllllvglQGllGwwmVksgLsekprvspyrlaaHLllaflllalllwlalrllake... 172
                 + E  HRl+++++G+l+++++++ l  k+ + ++k+  +++l+lv++QG+lG   V +        +  ++ a L+ afl+l++++wl ++        
  CCG91443.1  60 FYEHSHRLVASAVGFLTIILFFLLLF-KEKRAWVKWAGCFALILVIFQGILGGLRVVWMK-----DQIGIIHAALAQAFLVLVGIIWLSTSKYWITenh 152
                 789*******************9998.68889999999**************99999983.....4556666779999****99999988743333334 PP

  COX15-CtaA 173 .aesaeeeaaakklrllallllallllqialGalvagldAglayntfplmggelipdklplceldwrnlfenpatv............qfaHRllAilv 258
                  +++   + ++k++ ll l+l +++++q++lGa +++ + gl++++fpl  g++ip    l  +d++n+  + +++            q+aHR++A+++
  CCG91443.1 153 lQKDNYYVGGTKNIPLLFLFLSLIVYIQLLLGAAMRHAHLGLSITDFPLAYGQIIPR---LTPEDLANINAKRQAMglppttlgqihlQLAHRFVALVI 248
                 44477888999999999999************************************9...3456777777777777778888999999*********** PP

  COX15-CtaA 259 llvllllailllrkarspklarlavllaallllQvalGistvllavplslavaHqlgaalllla 322
                 +l+ ++ ++ l +ka s+ + ++a ll+ l++lQ++lG + ++++ +  +  aH l++a++l +
  CCG91443.1 249 FLLTVFSFFVLKKKAPSSSVLSMARLLHSLVALQIVLGAFVIWTGKENIITTAHVLVGAAILFL 312
                 *******9999999999*************************************9998888865 PP

>> DUF998  Protein of unknown function (DUF998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0  13.0   5.8e-07    0.0034      68     180 ..       5     142 ..       1     144 [. 0.85
   2 !    9.5   6.6   0.00011      0.68     101     176 ..     237     317 ..     223     324 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.8e-07
      DUF998  68 agragrlllavaglglvlagvfptdpgggsp.......................slsglvHglasavaflalavavlllasaarrrawallrlvggval 143
                 +  + +++l+ +++ l+++g+  t++ +g++                        +  + H+l++ +++++ ++ ++ll    ++  +a+++++g  al
  CCG91443.1   5 LINVFSAILTFFVFLLIAVGAMVTSTNSGMAvpdwpttfgynmfsfplsrwiggVFYEHSHRLVASAVGFLTIILFFLLL---FKEKRAWVKWAGCFAL 100
                 556778899999999**************************************99999***8888888888888888888...6788888888888887 PP

      DUF998 144 lllvaalvwllaa.....aldgslllGlaerllvlaitawll 180
                 +l +  +++++++        g   ++la+ +lvl++++wl 
  CCG91443.1 101 ILVIFQGILGGLRvvwmkDQIGIIHAALAQAFLVLVGIIWLS 142
                 77777777777777767778888899**************96 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00011
      DUF998 101 sglvHglasavaflalavavlllasaarrrawallrlvggvallllvaalvwllaa.......aldgslllGlaerllvlait 176
                  +l+H+++++v fl+ + ++++l    + +  ++l+ + ++  l+++ +++  ++        +++ + l+G a  +l  +it
  CCG91443.1 237 LQLAHRFVALVIFLLTVFSFFVLK--KKAPSSSVLSMARLLHSLVALQIVLGAFVIwtgkeniITTAHVLVGAAILFLSSLIT 317
                 4789********************..555555555555554444444444444443111445555555555555555444444 PP

>> DUF543  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3     7e-05      0.42      28      57 ..      66      96 ..      63      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7e-05
      DUF543 28 llvkvglgllvGvvasvllfr.rRaapvalG 57
                 lv +++g+l  +++ +llf+ +Ra++ + G
  CCG91443.1 66 RLVASAVGFLTIILFFLLLFKeKRAWVKWAG 96
                58999*****************9***99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       971  (0.0541581); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2393.92
//
Query:       CCG91444.1  [L=52]
Description: hypothetical protein MFUM_1040010 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       159  (0.00886831); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 413.32
//
Query:       CCG91445.1  [L=326]
Description: MoxR-like ATPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-64  215.6   0.1    2.3e-64  215.1   0.1    1.2  1  AAA_3            ATPase family associated with various cellul
    7.5e-14   51.3   0.0      6e-13   48.4   0.0    2.3  2  AAA_lid_2        AAA lid domain
      1e-11   45.0   0.0    2.2e-11   43.9   0.0    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
    2.8e-05   23.9   0.1    0.00022   21.0   0.1    2.0  1  Sigma54_activat  Sigma-54 interaction domain
    0.00022   20.4   0.1     0.0024   17.0   0.1    2.4  1  MCM              MCM P-loop domain
    0.00054   19.7   0.9     0.0049   16.6   0.1    2.4  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00076   19.9   0.1     0.0056   17.1   0.1    2.4  2  AAA              ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.023   14.1   1.3        1.3    8.4   0.6    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI


Domain annotation for each model (and alignments):
>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.1   0.1     1e-67   2.3e-64       1     131 []      38     168 ..      38     168 .. 0.99

  Alignments for each domain:
  == domain 1  score: 215.1 bits;  conditional E-value: 1e-67
       AAA_3   1 hvllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanllladeinrappktqsalleameerqvtvegethk 99 
                 h+l+eg+PGlaktll+k++aka++l+f+riqftpdllPsd++Gt++f+ ke +f  + Gp+fanl+ladeinrap+k+qsalleam+e+qvt++g++h+
  CCG91445.1  38 HILIEGMPGLAKTLLIKTIAKAVGLKFERIQFTPDLLPSDVVGTMIFQPKEGRFFPHLGPIFANLVLADEINRAPAKVQSALLEAMQEKQVTIGGTSHR 136
                 9************************************************************************************************** PP

       AAA_3 100 lpepflvlatqnPieqeGtyplpeaqldrfll 131
                 lp+pflv+atqnPieqeGtyplpeaq drfl+
  CCG91445.1 137 LPDPFLVMATQNPIEQEGTYPLPEAQSDRFLF 168
                 ******************************96 PP

>> AAA_lid_2  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.45     1e+03      54      73 .]     189     208 ..     183     208 .. 0.90
   2 !   48.4   0.0   2.7e-16     6e-13       8      73 .]     245     311 ..     243     311 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.45
   AAA_lid_2  54 Rlrrepeaegetteeiveei 73 
                 Rl++epe +++++ e+++ei
  CCG91445.1 189 RLTEEPEISPVSSPEEIREI 208
                 89999***********9996 PP

  == domain 2  score: 48.4 bits;  conditional E-value: 2.7e-16
   AAA_lid_2   8 aielgvsgrRadlallraArAlAalegrdyVtpeDvkeaaplVLaHRlr..repeaegetteeiveei 73 
                 ++++g+s+r a+lal +a+rAlA+++g d+ +p+ ++e+    L+HR+   +e eaeg+t e+i+eei
  CCG91445.1 245 RLSYGASPR-ASLALFQASRALAWIRGSDFLSPQFIQELYIDSLRHRVGlsYESEAEGKTVESILEEI 311
                 5789*****.****************************************999999999999999986 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   9.7e-15   2.2e-11       1     138 []      38     166 ..      38     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 9.7e-15
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--...........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik..ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllle 97 
                 ++l+ G pG +K+ l++ +a+a++ ++e +q+t d+ ++d++g + ++  +g+   + +p+      + +++ DE++ra+ +v+++Ll  + e+++   
  CCG91445.1  38 HILIEGMPGLAKTLLIKTIAKAVGLKFERIQFTPDLLPSDVVGTMIFQpkEGRFFPHLGPIF-----ANLVLADEINRAPAKVQSALLEAMQEKQVT-- 129
                 6899*******************************************987888888899999.....99****************************.. PP

                 -SSSEEE---......-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5  98 eggelvkaknddllerfrviatanpld.rslnelspalrsRf 138
                  gg+  + + +     f v+at np +  +  +l +a  +Rf
  CCG91445.1 130 IGGTSHRLPDP-----FLVMATQNPIEqEGTYPLPEAQSDRF 166
                 44444444544.....*********99766677777777776 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1     1e-07   0.00022      96     148 ..     102     153 ..      21     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1e-07
                      EEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHH CS
  Sigma54_activat  96 tlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleea 148
                       ++ Dei++ p+++Q+ Ll+++qe++v+ +G+++++  d  +++at++ +e++
       CCG91445.1 102 LVLADEINRAPAKVQSALLEAMQEKQVT-IGGTSHRLPDPFLVMATQNPIEQE 153
                      5667**********************96.89999999999*******999875 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.1e-06    0.0024      58     175 ..      37     151 ..       1     163 [. 0.77

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.1e-06
                 -EEEEEESSTSTHHHHHHHHHHHS....SSEEEEESSSSSSSHSSSEEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEE CS
         MCM  58 invllvgdpgtaKsqlLkyvekla....pravytsgkgssaagLtaavvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisi 152
                  ++l+ g pg+aK+ l+k+++k +    +r ++t       ++ + ++  ++++g f+ + G +      +++ De+++   + +sal+Eam +++++i
  CCG91445.1  37 GHILIEGMPGLAKTLLIKTIAKAVglkfERIQFTPDLL--PSDVVGTMIFQPKEGRFFPHLGPIFAN---LVLADEINRAPAKVQSALLEAMQEKQVTI 130
                 589**************999976411113334443333..445666677789999999999998754...899***********************999 PP

                 ESSSCEEEEE--EEEEEEE--SS CS
         MCM 153 aKaGivatLnartsvlaAanpka 175
                   +G    L+    v+a  np++
  CCG91445.1 131 --GGTSHRLPDPFLVMATQNPIE 151
                 ..566799999999999999984 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   2.2e-06    0.0049      35     115 ..      38     130 ..      33     136 .. 0.71
   2 ?   -3.3   0.0         3   6.6e+03      92     117 ..     204     229 ..     203     246 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.2e-06
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvkl.kitsgPvlekagdlaalltnleek...........dvlfideihrlsraveevlysamedfrldi 115
                 h+l+ G PGl kt l k iak +g k+ +i  +P l  +  + +++ + +e+           ++++ dei r   +v+  l  am++ ++ i
  CCG91445.1  38 HILIEGMPGLAKTLLIKTIAKAVGLKFeRIQFTPDLLPSDVVGTMIFQPKEGrffphlgpifaNLVLADEINRAPAKVQSALLEAMQEKQVTI 130
                 ************************998345667877655444455554444312222222222567789999999999999999998887755 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3
      RuvB_N  92 eihrlsraveevlysamedfrldivi 117
                 ei  +++++++v+ s m ++++  ++
  CCG91445.1 204 EIREIRKEIDQVFVSPMAEHYILALV 229
                 78888888888888777554443333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   2.5e-06    0.0056       1     100 [.      39     138 ..      39     173 .. 0.63
   2 ?   -2.3   0.0       2.4   5.4e+03      67      91 ..     284     309 ..     231     316 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.5e-06
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEET.TTCS.SSSTTHHHHHHHHHHHHHHHTS........TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisg.sell.skyvgesekkirelfkeakeka........kpsilfiDEidalaksrsgseseeeervvnqL 89 
                 +l+ G pG  KTll+k +ak +g +f +i+  ++ll s++vg +      +f+  ke +            ++ DEi +   +           v+++L
  CCG91445.1  39 ILIEGMPGLAKTLLIKTIAKAVGLKFERIQFtPDLLpSDVVGTM------IFQP-KEGRffphlgpiFANLVLADEINRAPAK-----------VQSAL 119
                 6899**********************999862566644433332......2222.2222222222221245666666665333...........47777 PP

                 HHHHHHTTTS........S CS
         AAA  90 lteldgvkkk........e 100
                 l+++++ +           
  CCG91445.1 120 LEAMQEKQVTiggtshrlP 138
                 7777777666555555543 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.4
                 GGGHHHHH..TTCCCHHHHHHHHHHHH CS
         AAA  67 idalaksr..sgseseeeervvnqLlt 91 
                 id+l   r   + ese e ++v+ +l+
  CCG91445.1 284 IDSLRH-RvgLSYESEAEGKTVESILE 309
                 455533.23523344444444444444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.6   0.00057       1.3       4      43 ..      18      57 ..      16      64 .. 0.87
   2 ?    3.7   0.0     0.016        35     110     159 ..     103     150 ..      96     162 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00057
  Mg_chelatase  4 dvkGqeeakraleiaaaGgHnlllvGppGsGKtmlakrlp 43
                   ++G+++  + l i    g ++l+ G pG  Kt+l+k ++
    CCG91445.1 18 AIIGHQTIIERLLIGLLTGGHILIEGMPGLAKTLLIKTIA 57
                  6889999999999998888889**************9886 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.016
  Mg_chelatase 110 LfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpc 159
                   ++ DE+    +kv  +L e +++++vti  ++++   p  f ++a+ Np 
    CCG91445.1 103 VLADEINRAPAKVQSALLEAMQEKQVTIGGTSHR--LPDPFLVMATQNPI 150
                   4569************************877665..57789999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2252.02
//
Query:       CCG91446.1  [L=305]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-15   55.8   0.0    6.3e-15   55.2   0.0    1.3  1  DUF58     Protein of unknown function DUF58


Domain annotation for each model (and alignments):
>> DUF58  Protein of unknown function DUF58
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   3.5e-19   6.3e-15       1      81 [.      50     130 ..      50     135 .. 0.93

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 3.5e-19
       DUF58   1 gldfaglReYvpgDplrrIdWkatARtgelyvrefeaerartvllvldlspemslgstgdekletavsaaaslarqlldeg 81 
                 g +f+++ +Y+ gD++r+IdW++tAR+g ly +++ +er+  +++v+  sp+  +gs   +k et +++aa la  +    
  CCG91446.1  50 GKEFDQVVAYEFGDDFRDIDWNVTARLGALYRKKYVEERELVIVIVIEDSPSLLFGSGAMTKRETVMEIAAILAILATGFR 130
                 5799********************************************************************999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2288.29
//
Query:       CCG91447.1  [L=334]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-28   99.7   0.0    2.9e-28   99.3   0.0    1.1  1  VWA       von Willebrand factor type A domain
      1e-19   71.1   0.0    2.1e-19   70.2   0.0    1.4  1  VWA_2     von Willebrand factor type A domain
      1e-05   25.8   4.6      1e-05   25.8   4.6    2.0  2  BatA      Aerotolerance regulator N-terminal
    0.00084   18.8   0.0     0.0024   17.3   0.0    1.6  1  VWA_CoxE  VWA domain containing CoxE-like protein
     0.0085   16.0   0.1       0.55   10.2   0.1    2.9  2  VWA_3     von Willebrand factor type A domain
  ------ inclusion threshold ------
      0.012   14.8   0.4       0.06   12.5   0.4    1.9  1  DUF1194   Protein of unknown function (DUF1194)


Domain annotation for each model (and alignments):
>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   9.7e-32   2.9e-28       1     173 [.      88     290 ..      88     292 .. 0.91

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 9.7e-32
                 EEEEEEE-STTS......CHHHHHHHHHHHHHHHHHHTBTTTTEEEEEEEESSSEEEEEETTSHCHHHHHHHHHHTG..SGGGGSSC-HHHHHHHHHHH CS
         VWA   1 DivfvlDgSgsm......geenfekvkefikklveklevgpegtrvglvqfssevktefslndysskeellsalnnl..kysgggttntgkalkyalek 91 
                 Div+vlD Sgsm       ++++ ++++ + ++v+ +  ++ ++r++lv f++ ++t+++l+ ++  +++++++++l    ++ gt+ +g+al  al++
  CCG91447.1  88 DIVLVLDISGSMlaedyeIDQKMVSRLDVVLDVVKAFLDKRVNDRIALVAFAGRAYTVCPLTFDH--QWIKRKIDQLqaGAIEDGTA-IGDALGLALSR 183
                 9***********665554455555999999999999998************************77..9********9999999****.*********** PP

                 HHHHHGT.SSTTSEEEEEEEESS--CSS..HTHHHHHHHHGCTEEEEEEEE.......................SSSHHHHHHHHHSSSSCHHCEEEES CS
         VWA  92 lfkssag.aRenakkviilltdGksndg..dpkeaaneakeqgikvfavGv.......................gnadekelLnkiasepgeghvftvt 164
                 l  ++++ aR ++ +++illtdG +n+g   p+eaa+ a ++ i vfa+G                         + +++elL+kia+ +g g +f++t
  CCG91447.1 184 LEGKKESeARHKIGSFLILLTDGANNCGnlLPLEAAQLAARSSIPVFAIGAglsgevtmpvldeerrkigsqtvISEVDEELLRKIAQLTG-GEYFRAT 281
                 **999998999****************77*********************************************55566666*********.******* PP

                 SHHHHHHHH CS
         VWA 165 dfeeleelf 173
                 d++++ ++f
  CCG91447.1 282 DSNAILSAF 290
                 ***977666 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   6.9e-23   2.1e-19       1     106 [.      89     206 ..      89     207 .. 0.94

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 6.9e-23
       VWA_2   1 lvfvlDtSgSmrngdy.....gptrleaakdaveallkslpgdrvglvtfsdgpevlipltkdkakilnalrnleak..gggtnlaaaLqlarkalkkr 92 
                 +v+vlD SgSm ++dy       +rl+ + d v+a+l+++ +dr++lv+f++++++++plt d++ i++++++l+a   ++gt +++aL la + l+ +
  CCG91447.1  89 IVLVLDISGSMLAEDYeidqkMVSRLDVVLDVVKAFLDKRVNDRIALVAFAGRAYTVCPLTFDHQWIKRKIDQLQAGaiEDGTAIGDALGLALSRLEGK 187
                 79**************99875588***************99*******************************************************777 PP

       VWA_2  93 r.....kgekrvivlitDg 106
                 +      +  + ++l+tDg
  CCG91447.1 188 KesearHKIGSFLILLTDG 206
                 7778888999999****99 PP

>> BatA  Aerotolerance regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   4.6   3.5e-09     1e-05       3      77 .]       6      73 ..       1      73 [. 0.92
   2 ?   -3.6   1.4       5.2   1.6e+04       8      16 ..     321     329 ..     314     331 .. 0.64

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3.5e-09
        BatA  3 pFlnPllLlallllplpiillyllkrrpqev.vfsslrlleevekdeealqrlkknllllLrllalallvlalArP 77
                 F+nP ++++llllpl   ++++++ +++e+  ++    + ++e++ +      ++l++++  la++l ++alArP
  CCG91447.1  6 VFANPSFFFLLLLLPL---VWFFRRYKKEEPfFLPFASQWVGTERQGSI-----NKLPVVCCYLAFVLFIIALARP 73
                6***************...999999999999888888899999999999.....99*******************9 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.2
        BatA   8 llLlallll 16 
                 l++++l+ l
  CCG91447.1 321 LFFWFLAFL 329
                 456777655 PP

>> VWA_CoxE  VWA domain containing CoxE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   8.2e-07    0.0024      57     161 ..      86     207 ..      75     226 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8.2e-07
    VWA_CoxE  57 prelvllvDvSgSm.........aays..aiflallhAllqqlp..rtevfaFdtrlvdlTral.rerDpaeaLarvsaavedlgGgTrigaalaefle 141
                   ++vl++D+SgSm         ++ s   ++l +++A l+++   r+ ++aF  r   + +   +++  ++ +++++  + +++ gT ig+al  +l+
  CCG91447.1  86 GYDIVLVLDISGSMlaedyeidqKMVSrlDVVLDVVKAFLDKRVndRIALVAFAGRAYTVCPLTfDHQWIKRKIDQLQ--AGAIEDGTAIGDALGLALS 182
                 349**********9663333333222322589*********99999**************998736666666666666..667***********99998 PP

    VWA_CoxE 142 lvtrpaLsr.....ravvvlvsDgl 161
                 + + +  s+     ++ ++l++Dg 
  CCG91447.1 183 RLEGKKESEarhkiGSFLILLTDGA 207
                 8876542222222388999999984 PP

>> VWA_3  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   0.00018      0.55       2     138 ..      88     239 ..      87     247 .. 0.70
   2 ?    1.7   0.0     0.075   2.2e+02     135     153 ..     259     277 ..     251     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00018
       VWA_3   2 evvivvDvsssmsaen....klvkdaLsvalrq....Lptnd..kiavllfgtkprplfpgsravsaaelqealqkikelels..lgasnlegaLkeal 88 
                 ++v+v+D+s sm ae     + +++ L v+l      L +++  +ia+++f  ++  + p       ++ q ++ ki++l++   ++++    aL  al
  CCG91447.1  88 DIVLVLDISGSMLAEDyeidQKMVSRLDVVLDVvkafLDKRVndRIALVAFAGRAYTVCPL-----TFDHQWIKRKIDQLQAGaiEDGTAIGDALGLAL 181
                 6888888888888877777767777777765444446666543367777776665544443.....356788999999999866788888888888888 PP

       VWA_3  89 rqp.......akpgevrsvilltDgss.aqgeervsdlisrarekirfhalglgssls 138
                 +         a+ ++ +++illtDg+        ++++  +ar+ i+++a+g g s  
  CCG91447.1 182 SRLegkkeseARHKIGSFLILLTDGANnCGNLLPLEAAQLAARSSIPVFAIGAGLSGE 239
                 5223444566999999**********85555566777777888999999999887655 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.075
       VWA_3 135 sslsaamlqaLAeasgGty 153
                 s++++++l+++A+ +gG y
  CCG91447.1 259 SEVDEELLRKIAQLTGGEY 277
                 46899************88 PP

>> DUF1194  Protein of unknown function (DUF1194)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4     2e-05      0.06       6     145 ..      89     225 ..      86     246 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2e-05
     DUF1194   6 LvLavDvSgSvdeeElrlQreGyaaAlrdpevleallagalgriavtyveWsgeseqevvvdWtviesaedaeafaaklaaapraaarr.taigeAlef 103
                 +vL +D+SgS+ +e++++ ++         +v++a+l+    + ++++v  +g++     +       + d + + +k+ + +  a +  taig Al  
  CCG91447.1  89 IVLVLDISGSMLAEDYEIDQKMVSRLDVVLDVVKAFLDKR-VNDRIALVAFAGRAYTVCPL-------TFDHQWIKRKIDQLQAGAIEDgTAIGDALGL 179
                 79999***********998885544445678999998854.44456666677755433333.......2333444444444444444444********* PP

     DUF1194 104 aaallaenpveglrrviD....vSGDGpnneglepvtaardaaeak 145
                 a + l+ ++ + +r+ i     +  DG+nn g     +a + a ++
  CCG91447.1 180 ALSRLEGKKESEARHKIGsfliLLTDGANNCGNLLPLEAAQLAARS 225
                 ******9888777765543333789999999944333444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.35
# Mc/sec: 2829.16
//
Query:       CCG91448.1  [L=229]
Description: Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-18   63.5  13.3    4.5e-07   29.4   1.0    4.4  4  Hexapep     Bacterial transferase hexapeptide (six repeats)
    1.1e-06   28.3  14.7        0.7    9.7   0.2    5.3  5  Hexapep_2   Hexapeptide repeat of succinyl-transferase
     0.0003   19.9   0.1       0.23   10.3   0.0    2.5  2  Fucokinase  L-fucokinase
  ------ inclusion threshold ------
      0.016   13.4   0.1      0.022   12.9   0.1    1.3  1  DUF4954     Domain of unknown function (DUF4954)


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   6.5e-07    0.0029      13      36 .]      58      81 ..      54      81 .. 0.86
   2 !   29.4   1.0   9.9e-11   4.5e-07       2      33 ..      83     114 ..      82     117 .. 0.92
   3 !   11.4   0.1   4.6e-05      0.21       2      35 ..     118     150 ..     117     151 .. 0.88
   4 !   12.3   0.4   2.4e-05      0.11       2      27 ..     177     202 ..     176     208 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.5e-07
                TEEEETTEEE-TTEEEETTEEEES CS
     Hexapep 13 faviggnVkIGdnvkIgagvvigg 36
                 ++ig+ V +G++++I +g+ i g
  CCG91448.1 58 SCYIGPKVYVGKGTIIYPGAMIEG 81
                68999*************999975 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 9.9e-11
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvv 33 
                 + IG+n++I+ ++ i+ nV+I +++++g+ + 
  CCG91448.1  83 AWIGENCQIRTGCFIRKNVIIEEGCILGNSCE 114
                 78**************************9886 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 4.6e-05
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 +++ +n+++ +f ++ g+ ++G  v++gagv + 
  CCG91448.1 118 SFLFKNCQVPHFNYV-GDSILGTKVHLGAGVILS 150
                 67779**********.9999**********9875 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 2.4e-05
                 EEEETTEEE-TTEEEETTEEE-TTEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvk 27 
                 +++G++ +Ig +av+ ++ ++G+ ++
  CCG91448.1 177 AILGDGIQIGCNAVLNPGSILGKKTV 202
                 78999***************998765 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.1    0.0025        11      13      32 ..      58      79 ..      57      81 .. 0.83
   2 !    9.7   0.2   0.00016       0.7       2      33 ..      65      98 ..      64      99 .. 0.90
   3 !    8.4   1.0   0.00039       1.7       1      15 [.     100     114 ..     100     115 .. 0.89
   4 !    6.2   0.0    0.0019       8.6      19      32 ..     136     149 ..     116     151 .. 0.87
   5 !    9.1   0.4   0.00024       1.1      16      33 ..     179     198 ..     175     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0025
                T-EES..EEE-TT-EE-TT-EE CS
   Hexapep_2 13 nagiG..vslGdncvvgaGvvi 32
                +++iG  v +G++ ++++G +i
  CCG91448.1 58 SCYIGpkVYVGKGTIIYPGAMI 79
                5889888999999999999887 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00016
                EEE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE- CS
   Hexapep_2  2 viIGdnCliGanagi..GvslGdncvvgaGvvit 33
                v +G+ ++i + a i  +  +G+nc +  G++i 
  CCG91448.1 65 VYVGKGTIIYPGAMIegPAWIGENCQIRTGCFIR 98
                889***********9955************9995 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00039
                 .EEE-TT-EE-TT-E CS
   Hexapep_2   1 pviIGdnCliGanag 15 
                 +viI++ C++G +++
  CCG91448.1 100 NVIIEEGCILGNSCE 114
                 69*********9985 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0019
                 EE-TT-EE-TT-EE CS
   Hexapep_2  19 slGdncvvgaGvvi 32 
                 +lG ++++gaGv++
  CCG91448.1 136 ILGTKVHLGAGVIL 149
                 79**********98 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.00024
                 E..SEEE-TT-EE-TT-EE- CS
   Hexapep_2  16 i..GvslGdncvvgaGvvit 33 
                    G+++G n+v+ +G+++ 
  CCG91448.1 179 LgdGIQIGCNAVLNPGSILG 198
                 3559************9986 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1   0.00044         2     277     329 ..      57     108 ..      13     116 .. 0.57
   2 !   10.3   0.0   5.2e-05      0.23     277     325 ..     116     162 ..     110     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00044
  Fucokinase 277 inSvlessvsvgegsvie.hsslkgnvsigsnsivsglelesseeslelpddti 329
                  ++ + ++v vg+g++i+    ++g+  ig+n+ +   ++ ++  ++ + + +i
  CCG91448.1  57 QSCYIGPKVYVGKGTIIYpGAMIEGPAWIGENCQIRTGCFIRK--NVIIEEGCI 108
                 4556666666666666663122234444444444422222222..233333333 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 5.2e-05
  Fucokinase 277 inSvlessvsvgegsviehsslkgnvsigsnsivsglelesseeslelp 325
                  nS+l ++++v    ++ +s l+ +v+ g++ i+s+l+l+ s  +++++
  CCG91448.1 116 KNSFLFKNCQVPHFNYVGDSILGTKVHLGAGVILSNLKLDGS--EIKIK 162
                 699*************************************98..46776 PP

>> DUF4954  Domain of unknown function (DUF4954)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     5e-06     0.022     233     273 ..      87     128 ..      54     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5e-06
     DUF4954 233 sGskikdgavisr.cfvGqavklkkqfsaedsllfaNcqgen 273
                 + ++i  g  i + +++ +++ l++    ++s+lf+Ncq+ +
  CCG91448.1  87 ENCQIRTGCFIRKnVIIEEGCILGNSCEFKNSFLFKNCQVPH 128
                 446677777775426778899999999999999999999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1625.05
//
Query:       CCG91449.1  [L=146]
Description: Cell division protein MraZ [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-22   77.4   0.6    2.2e-11   43.6   0.1    2.1  2  MraZ      MraZ protein, putative antitoxin-like
  ------ inclusion threshold ------
      0.093   13.0   0.7       0.19   12.1   0.2    1.9  2  Flu_NS2   Influenza non-structural protein (NS2)


Domain annotation for each model (and alignments):
>> MraZ  MraZ protein, putative antitoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   7.2e-12   6.4e-08       6      62 ..      12      68 ..       8      77 .. 0.89
   2 !   43.6   0.1   2.5e-15   2.2e-11       7      64 ..      84     140 ..      80     145 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 7.2e-12
                EEEEB-TTSEEE--CHHHHHTTSCSEEEEEECCSEEEEEEHHHHHHHHHCHHTS-CC CS
        MraZ  6 tevelDakGRlllPaklreeaklekevvviGvsncLeiwpraeWekyeeelaeesls 62
                +e+++D+kGR+++P+++r+e  ++++ v+ +++++L ++p+   e++ +++  + l+
  CCG91449.1 12 FEHAFDEKGRITVPSEWRQEGYDSRLFVFPSKFHHLKVYPESWMEEIHQKIETLRLQ 68
                6899**************************************999999997766555 PP

  == domain 2  score: 43.6 bits;  conditional E-value: 2.5e-15
                 EEEB-TTSEEE--CHHHHHTTSCSEEEEEECCSEEEEEEHHHHHHHHHCHHTS-CCCH CS
        MraZ   7 evelDakGRlllPaklreeaklekevvviGvsncLeiwpraeWekyeeelaeeslsek 64 
                 +v  D++GR+++  +lr++ +  ke v++G+ +++eiw++ +W++ ++  ++ s++e+
  CCG91449.1  84 AVSWDQQGRISIKERLRKHSQIGKEAVLVGRLDHFEIWDQRKWQEETAG-KSTSFEEA 140
                 6788****************************************98888.78888776 PP

>> Flu_NS2  Influenza non-structural protein (NS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   2.1e-05      0.19      26      52 ..      42      68 ..      28     105 .. 0.84
   2 ?   -0.9   0.1      0.23   2.1e+03      33      49 ..     121     137 ..      89     144 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.1e-05
                XXXXXXXXXX-CHHHHHHHHHHHHHHH CS
     Flu_NS2 26 tdlhslqnrnekwreqlgqkreeirll 52
                + +h l+   e w e++ qk e++rl 
  CCG91449.1 42 SKFHHLKVYPESWMEEIHQKIETLRLQ 68
                56899********************84 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.23
                 XXX-CHHHHHHHHHHHH CS
     Flu_NS2  33 nrnekwreqlgqkreei 49 
                   + kw+e+ + k    
  CCG91449.1 121 WDQRKWQEETAGKSTSF 137
                 34567887776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1024.99
//
Query:       CCG91450.1  [L=314]
Description: Ribosomal RNA small subunit methyltransferase H [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-75  254.4   0.0      2e-75  254.2   0.0    1.0  1  Methyltransf_5   MraW methylase family
  ------ inclusion threshold ------
       0.11   12.1   0.0       0.19   11.3   0.0    1.4  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
       0.13   12.9   0.1         26    5.5   0.0    2.5  2  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_5  MraW methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.2   0.0   3.3e-79     2e-75       3     305 ..      11     304 ..       9     308 .. 0.92

  Alignments for each domain:
  == domain 1  score: 254.2 bits;  conditional E-value: 3.3e-79
                     XX--TTTHHHHHHT---TT-EEEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHHHHTTTT-EEEEE CS
  Methyltransf_5   3 eHvpVLlqevvellepkedgvyiDaTlGaggHsealLeqlselrligidrDksalarakerLkefekrltlvkgnfkelkealaeanvtkvdgil 97 
                      HvpV+l+e +el +p+e+  +iD+T+G ggH++alLe+    +++++d+D++a +ra   L+e+  ++ ++++nf+e++ a+++ + + vdg+l
      CCG91450.1  11 LHVPVMLKEFLELCQPQENEKWIDGTFGYGGHTTALLERR--CKVLAMDMDEQAQQRAGL-LREKGYHFYFFRKNFSEMAVACSQIGWDWVDGVL 102
                     7************************************975..5799************87.9999999*************************** PP

                     EE-S--HHHHH-GGG---SS.S--BS---S-TTSS--HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHHHHHHS---BHHHHHHHHHHHS-- CS
  Methyltransf_5  98 lDLGvSslqldkaerGFsfa.edapLDmRmdqsaeltAaevlnrlseeeLakilkeygeekfakriakaivekrkkkpiettkelaevikkvvpa 191
                     lDLGvS+ ql++++rGFsf+  +apLDmRmd+s+e+tAa +ln+ls+e L +++      k ++r+a+++++ r+ +pi ++k++ e+i k+  +
      CCG91450.1 103 LDLGVSIGQLKDPQRGFSFQfPEAPLDMRMDSSKEKTAAFLLNNLSKELLIRLFSVSCKPKESQRLAEEVERFRSIRPILRVKDFLEIILKARLS 197
                     ********************89********************************************************************95544 PP

                     -----..-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTT-------------..------EEEEE.E. CS
  Methyltransf_5 192 kekrkkihpatrvFQAlRIavNdEleeleelleaalellakggrlavisFhSledrivkkvfkeaskkeevPaglpvas..eelkaklklitkkp 284
                     k    k+h atr F AlR+avN+Ele+l++ le+  +ll++ggrlavisFhS edr+vk++f++       P+g    +  +e +  +  i ++ 
      CCG91450.1 198 K---AKGHVATRPFLALRMAVNEELEHLQKGLEEGARLLNEGGRLAVISFHSGEDRLVKRFFQDHCL----PKGRHAPEgeKEREVFFYRIERR- 284
                     3...459*******************************************************99765....66654444004445567778877. PP

                     E---HHHHHH-GGGTT-EEEE CS
  Methyltransf_5 285 ilpseeeikeNprsrsakLrv 305
                      l s ee ++Npr+rsa+Lr+
      CCG91450.1 285 -LVSREESRNNPRARSARLRI 304
                     .88*****************8 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.2e-05      0.19       4      48 ..      24      65 ..      21     112 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.2e-05
                     H---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHH CS
  Methyltr_RsmB-F  4 LapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkr 48
                      +pqe+e+++D   + Gg Tt ++e    + +v+A+d++++  +r
       CCG91450.1 24 CQPQENEKWIDGTFGYGGHTTALLER---RCKVLAMDMDEQAQQR 65
                     58*******************88765...8899999998875554 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0044        26       5      39 ..      37      71 ..      33     101 .. 0.78
   2 ?    5.0   0.0    0.0065        39      70      96 .]     215     241 ..     209     241 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0044
                     -TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCC CS
  Methyltransf_11  5 cGtGrlaealakrgarvvgvDlskemlklakekas 39
                      G G ++ al +r ++v+++D+++++ ++a    +
       CCG91450.1 37 FGYGGHTTALLERRCKVLAMDMDEQAQQRAGLLRE 71
                     588888999998889********999988854444 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0065
                      -CCC-CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  70 vlhhvedpekalkeiaRvLkpgGllvi 96 
                      v + +e ++k l+e aR+L  gG+l++
       CCG91450.1 215 VNEELEHLQKGLEEGARLLNEGGRLAV 241
                      556778899***************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2452.38
//
Query:       CCG91451.1  [L=112]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.063   13.1   0.0      0.088   12.6   0.0    1.4  1  DivIC     Septum formation initiator
       0.14   11.2   1.1       0.17   10.9   1.1    1.0  1  UPF0564   Uncharacterised protein family UPF0564


Domain annotation for each model (and alignments):
>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.8e-06     0.088      13      60 ..      34      80 ..      16      99 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.8e-06
                XXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXX CS
       DivIC 13 kkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieer 60
                 +  +++ ++  e++ +++ela +k +n +Lea +++  s++  +e r
  CCG91451.1 34 LYLKNRVLRISDELKIQEEELADMKRKNSRLEAMLAKG-SSPQELENR 80
                445577889999*********************99999.788888876 PP

>> UPF0564  Uncharacterised protein family UPF0564
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.1   1.9e-05      0.17     137     189 ..      48     100 ..      44     106 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.9e-05
     UPF0564 137 keqeqeekrkkrvekrkeellkssklpprmakaeekkkekkkkkeeqkkskek 189
                 k qe+e+   kr++ r e +l++ ++p +++++ +++k+   k+ e + ++ +
  CCG91451.1  48 KIQEEELADMKRKNSRLEAMLAKGSSPQELENRLKEWKIGLVKMSELEVIMME 100
                 679************************************98887776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1053  (0.0587317); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 886.28
//
Query:       CCG91452.1  [L=604]
Description: Cell division protein FtsI [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-72  243.9   0.0    2.9e-72  243.4   0.0    1.1  1  Transpeptidase  Penicillin binding protein transpeptidase dom
      2e-13   51.1   0.0    6.5e-12   46.2   0.0    2.7  2  PBP_dimer       Penicillin-binding Protein dimerisation domai


Domain annotation for each model (and alignments):
>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.4   0.0   3.3e-76   2.9e-72       2     302 ..     271     576 ..     270     579 .. 0.92

  Alignments for each domain:
  == domain 1  score: 243.4 bits;  conditional E-value: 3.3e-76
                     EEEEEETTT-BEEEEEEESE-TTTHHCC.TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSST.TSEEEEETCCEETTSS.ECTCCCC-SSSSE CS
  Transpeptidase   2 aavvldaktgevlamaskpsydpnakvg.kneplanravqsqyePGStfKvvtaaaaleagvik.pdetlddsggkiqggqsikdweqdnkgseg 94 
                     +a+v+++ktge+lama++ps+dpn++ + +   l+n+ +++ +ePGS+fK+vt++  le+++++ +++t+++++g +  g   + ++++    +g
      CCG91452.1 271 MAIVMNPKTGEILAMAQRPSFDPNRREKwNIAFLKNKNLTDPVEPGSIFKIVTLSGILEEKIFSlDNSTINCENGAFFYGG-KTLHDSHP---YG 361
                     799*************************99999******************************934678999999987554.34444443...55 PP

                     E.EHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSS.TT-B--..B--SSHHHHHHHHHTTT..SBB-HHHHHHHHHHHHTTTEEE CS
  Transpeptidase  95 i.tlrealekSsntyfvklaqklgadklrkylkkfglGnktgidl.pgesaG..vptrkwlegatisfgiG..ltvtplqlaqayaaiangGklv 183
                     + ++re+++kSsn++f+k+  +lg+++l++y+++fg+G++tg+ l +ges G  +p+r w++ +++    G  ++vtp+q+++a+aaian G+lv
      CCG91452.1 362 MlSVREVVMKSSNIGFAKMGLELGENRLYHYARAFGFGEPTGMLLgQGESPGilYPPRLWSKLSITRIPMGqeIAVTPIQMIRAMAAIANHGYLV 456
                     66****************************************998689****988888998888888888888********************** PP

                     --BSEEEEEECTT.EEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCG.TCTTS--EEEEEEEEECSSSTTSEEEEEEEEEEEEEESTTS CS
  Transpeptidase 184 kPhlvkaivdpdg.vrkvkpkelnklpisketaekvkeglkgvvsrgsgtata.avegykvagKTGTAevagkkgngkkegakiswfvgyapadn 276
                     kP ++k i++p+g  ++  ++++ +++is+ ta+ v+ +l +vvs + gt+++ a+ g++vagKTGTA+++   ++++ +g++is+f+g+ pa++
      CCG91452.1 457 KPMIIKDIRNPQGkIIRSFSPVIIRRVISERTAKLVTSALVSVVSPK-GTGAKaAIMGFTVAGKTGTAQKVV--HGNYVKGKYISSFIGFLPAED 548
                     **************9999999**************************.666666*****************9..778899999************ PP

                     -SEEEEEEECTCS..SSSSCCHHHHHHH CS
  Transpeptidase 277 pkyavavlieqpk..eaaggkaaapiak 302
                     p++++++++++p+  +++  ++aap++ 
      CCG91452.1 549 PEFVLMIMVDEPHgtQYYAASVAAPAFS 576
                     **************999******99986 PP

>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   7.2e-16   6.5e-12       2     176 ..      68     226 ..      67     229 .. 0.79
   2 ?   -2.5   0.0      0.62   5.5e+03      61      90 ..     465     492 ..     425     498 .. 0.74

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 7.2e-16
                 .EE----EE-TTS-EEEEEEEEEEEEEEESSS-HHHHHHHHHHHHHHCHHHTTS-HHHHHHHHCCCCTSSTTSCECCCCCEECHHHCCCHHHHHC.... CS
   PBP_dimer   2 ipapRGeIyDrngrlLAtnrpsytltitpsklkkkkalekikklaklleseenldderleelalkknsykaykpvviaediseeevarikenakd.... 96 
                 +p++RG I+D ++++LA++  +y++ ++  ++++   +  i++l + l     l+++ l +     n  +   +  +a+ +see+v+ +++ +k+    
  CCG91452.1  68 LPPKRGYIVDCKNVPLAQSFLTYKVRLDGMNVQEPAIT--IQELEEFLG----LEKNSLLQ-----NFRRMDRSYLLAKGLSEEKVQTLEAFEKEklrq 155
                 589**************************999998877..********6....44433333.....233333444555555555555555555555555 PP

                 ........STT-EEEEEEEEEETTTSTTHHHH-EEEEC-HHHHHCCCCHTCCTTCEEEESHHHHHTHHHHHECCCEEEEEEECTSSCC CS
   PBP_dimer  97 ........lpGinievepkRyYpkgelaahvlGyvgkiteeelekykekgyssgdliGksGlEkqyEeeLrGkkGkrqvkvdarGril 176
                            +++e++ +R Yp g+ aa+++Gy+ +                    G +G+Ek+++e+L G+ G++ +++d  G+ +
  CCG91452.1 156 wkkkklpaEHFLTFEEDYSRIYPCGREAAPLIGYLDEN-----------------GKGAAGVEKAMNEWLEGTPGEKWIERDVFGKEI 226
                 555564456678999********************999.................56**************************99976 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.62
                 HHHHCCCCTSSTTSCECCCCCEECHHHCCC CS
   PBP_dimer  61 eelalkknsykaykpvviaediseeevari 90 
                 ++   + +  ++++pv i++ ise +++ +
  CCG91452.1 465 RN--PQGKIIRSFSPVIIRRVISERTAKLV 492
                 44..55566678999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4409.76
//
Query:       CCG91453.1  [L=495]
Description: UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-47  162.0   0.0    2.4e-47  161.5   0.0    1.2  1  Mur_ligase_M  Mur ligase middle domain
    1.1e-24   86.4   0.0    1.4e-21   76.5   0.0    2.4  2  Mur_ligase_C  Mur ligase family, glutamate ligase domain
    1.8e-10   41.0   0.0    3.9e-10   39.9   0.0    1.6  1  Mur_ligase    Mur ligase family, catalytic domain
  ------ inclusion threshold ------
      0.037   14.3   0.0      0.093   13.0   0.0    1.6  1  DUF365        Domain of unknown function (DUF365)
       0.13   12.0   0.0       0.69    9.7   0.0    2.1  2  LpxD          UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyl


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.0   6.6e-51   2.4e-47       1     189 [.     110     315 ..     110     317 .. 0.94

  Alignments for each domain:
  == domain 1  score: 161.5 bits;  conditional E-value: 6.6e-51
                   EESSS-HHHHHHHHHHHHHCTEEEEETTC...............SS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCHCBESEEEE---TS CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvg...............ttnneiglpktlaemekkeaeyavlEvsshglgekrlegllkpdvavitnisp 82 
                   +TGtnGKTTt+ l++++le++g+++g++g               t ++  +l++++ +m k+++++av+Evssh+l+++r+eg ++++++++tn+++
    CCG91453.1 110 ITGTNGKTTTSFLMKHLLETQGWKTGLIGtiyydttvdripasrTSPEGSDLQQLFFQMLKANCQAAVMEVSSHALEQGRVEG-TEFRIGIFTNLTQ 205
                   8********************88888888888***************************************************.9************ PP

                   TTHHHHSSHHHHHHHHHHHHHTSETTC....EEEEETTSC...CHHHHHCTCCTCEEEEESSSTS.ECEEEEEEEEETTEEEEEEEEETTEEEEEEE CS
  Mur_ligase_M  83 dHldfhgtlenyaeaKaelferlkeeg....iavinaddpyakelikklkkakvkvvtfglekea.edlraknieeksegteiellevkggeleiei 174
                   dHld+h t+e+y ++K ++++ ++++      +v+n+ddp  ++l++klk + v+++t++ +++  ++l+a++i++++  t i l e++g+ +++++
    CCG91453.1 206 DHLDYHLTMEAYRQSKEKFISYIRAGRegegGVVLNIDDPQWSDLAEKLKGK-VNMITVSVQGKPtAKLKARFIKYDRLLTVI-LAEWEGQLYQLNS 300
                   ********************999987677789********999999998887.89*****999887789999****9999988.8889********* PP

                   SSCSCHHHHHHHHHH CS
  Mur_ligase_M 175 pllGkhnvyNalaai 189
                   pllG++nv+N+l++i
    CCG91453.1 301 PLLGRFNVENLLLSI 315
                   ************998 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   3.9e-25   1.4e-21       1      89 [.     338     423 ..     338     425 .. 0.97
   2 !    7.5   0.0    0.0013       4.7      25      77 ..     446     487 ..     432     490 .. 0.79

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 3.9e-25
                   CTTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEESS-TTSTHHH CS
  Mur_ligase_C   1 vkgRlevvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlgdypraedsia 89 
                   v+gR+e++  +dg++ ++Dyah  d+l +++ +lrei + +r+ilv+g+gg+   r+rt+++ ++++as++ad +++++d+pr+e+++ 
    CCG91453.1 338 VPGRMERFYAKDGLLAVVDYAHSEDALLKVVLTLREIQSSGRIILVVGCGGD---RDRTKRPKMAKVASDYADLVIFTSDNPRSESPER 423
                   79**************************************************...******************************9875 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0013
                   HHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEE CS
  Mur_ligase_C  25 dslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvv 77 
                   +++++a++++    + + +++v+g  g+      + ++e+g ++  ++d+lvv
    CCG91453.1 446 EAIRKAIQVA----NPGDIVCVAGK-GH------ETYQEMGGVFYPFDDRLVV 487
                   6899999999....779*******6.44......4566888888888888776 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.1e-13   3.9e-10       1      88 []      22      98 ..      22      98 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.1e-13
                EEEEESTTSCCHHHHHHHHHHTTSEEEEEESSHCHHHTT-EEEES-HGGGGEE-TS-TTCHHHHHHHHTTEEEEEHHHHHHHHHHCCE CS
  Mur_ligase  1 eihfigidgrgmsagalflalkGykvdGsdfieslialGaaavvghdaanivvssiskdnpeleaakepgipvesraeaLaelaarfy 88
                ei +i +d+r++ +g+lf+a kG k+dG+++ie++i +Ga+ v++++                   +   i+v++++++L++ a+ fy
  CCG91453.1 22 EINNIVYDSRKVVEGSLFFAWKGQKTDGHRYIEEAIGRGARGVICSEMP-----------AWQTSKQTTFIQVKDPRRVLGKVASVFY 98
                6899******************************************999...........889999999*************999887 PP

>> DUF365  Domain of unknown function (DUF365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.6e-05     0.093      30      93 ..     399     466 ..     392     468 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
                 HHHHHHTSTTBSS-HHHHHHHHH....HHHHT----SS---EEEEEEEEEEE--S-B--SS---TT-E CS
      DUF365  30 leifekygdrvfltkeelkkyvk....skerwrkgkkrkkawlvleledikkydkvvkPkrfvpvgGk 93 
                  ++ + y d v +t ++ ++ +     +  +++ ++++k  w+v   e+i+k  +v +P  +v v+Gk
  CCG91453.1 399 AKVASDYADLVIFTSDNPRSESPerifEDMKRGVDSSKKIYWIVDRKEAIRKAIQVANPGDIVCVAGK 466
                 57788999999999998887544113245566888899****************************98 PP

>> LpxD  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00019      0.69      24      68 ..      50      94 ..      39      96 .. 0.90
   2 ?   -1.2   0.0      0.49   1.8e+03      10      24 ..     452     466 ..     450     473 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00019
                CCCGGGCCC---SEEEEEHHHHCCHTTSCS.EESS-HHHHHHHHH CS
        LpxD 24 pkylkqlattkAgavivppdlaealpanaalivvenPylafakll 68
                 +y +++    A  vi+++  a + +++++ i v++P++   k++
  CCG91453.1 50 HRYIEEAIGRGARGVICSEMPAWQTSKQTTFIQVKDPRRVLGKVA 94
                6888888889999**************************998887 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.49
                 CCC--TTCEEEE-SC CS
        LpxD  10 leeAgpgdlsFlanp 24 
                 ++ A pgd++ +a +
  CCG91453.1 452 IQVANPGDIVCVAGK 466
                 7889*****999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3212.49
//
Query:       CCG91454.1  [L=79]
Description: hypothetical protein MFUM_1040021 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       185  (0.0103185); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 618.45
//
Query:       CCG91455.1  [L=118]
Description: hypothetical protein MFUM_1040023 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   17.2   0.0     0.0047   17.0   0.0    1.2  1  Resolvase  Resolvase, N terminal domain


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.6e-07    0.0047      50     123 ..       5      78 ..       1      98 [. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.6e-07
                 -HHHHHHHHHHTT-EE.EEEESSCCCC-S...S-HHHHHHHHHTT-EEEESS....SS----HHHHHHHHHHHHHH CS
   Resolvase  50 RpglkrllaalregkgdvlvvekldRLaRsvrdlltlleelrekgvslvslde.g.idtstpmgrlllqilaalae 123
                  +glkrll+a  +gk++ lvv +  RL    ++l+  + + r+k+v++v l++ +  + +++  + +l+i+a++++
  CCG91455.1   5 TRGLKRLLDAGISGKIKWLVVLHKNRLLCFGTELV--FATYRAKNVEVVLLNQdKeTTFEEDWAKGVLEIIAMFSA 78 
                 579***************************99999..559************612222233335557888777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 850.69
//
Query:       CCG91456.1  [L=459]
Description: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-40  138.9   0.0    2.8e-40  138.4   0.0    1.2  1  Mur_ligase_M  Mur ligase middle domain
    5.5e-14   52.2   0.0    1.3e-12   47.8   0.0    2.3  2  Mur_ligase    Mur ligase family, catalytic domain
    2.2e-10   40.7   0.0    2.4e-09   37.3   0.0    2.3  2  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4   0.0   4.7e-44   2.8e-40       1     191 [.     111     296 ..     111     297 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.4 bits;  conditional E-value: 4.7e-44
                   EESSS-HHHHHHHHHHHHHCTEEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHC.TTTCCHCBESEEEE---TSTTHHHHSSHHHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvgttnneiglpktlaemekkeaeyavlEvsshglge.krlegllkpdvavitnispdHldfhgtlenyae 96 
                   +TG+nGKT+t+e+i ++l+ ++k+++t g++nn+iglp+++++m++ ++ey v+E++ ++ ge + l+ ++ pd+a+itni+++H++++g++e++  
    CCG91456.1 111 ITGSNGKTSTKEMISSVLRVKYKTVSTSGNLNNQIGLPLSILQMDH-TTEYGVFELGTNHCGEiASLSRIVAPDIAIITNIGSAHVGNFGSVEAIGW 206
                   8*********************************************.************************************************** PP

                   HHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M  97 aKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlraknieeksegteiellevkggeleieipllGkhnvyNalaaiaa 191
                   +K  l++ ++++g+ ++  dd+++k+l  +++ +   v+ +g ++++   + ++i  + +g +  +   +g+++e++++ + +  ++Nal a+a+
    CCG91456.1 207 EKTDLLTFVSPKGFSILMEDDEWSKRLSVRSAGQ---VIWVGNQENS-LCWLDQIWLTLKGIRCGIS-RRGESFEVSLATVSREMAKNALFAAAV 296
                   **********************888888888887...9*******99.58999*********99666.69**********************998 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   2.3e-16   1.3e-12       4      84 ..      28      97 ..      26     101 .. 0.96
   2 ?    1.7   0.0     0.054   3.2e+02       7      24 ..     281     298 ..     278     301 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 2.3e-16
                EESTTSCCHHHHHHHHHHTTSEEEEEESSHCHHHTT-EEEES-HGGGGEE-TS-TTCHHHHHHHHTTEEEEEHHHHHHHHH CS
  Mur_ligase  4 figidgrgmsagalflalkGykvdGsdfieslialGaaavvghdaanivvssiskdnpeleaakepgipvesraeaLaela 84
                +i++d+r++++g+ flalkG+k dG d+++ + ++Ga+a++++++            p       p+i+v+++ eaL++la
  CCG91456.1 28 SISTDSRTVKEGDCFLALKGEKYDGLDYVATAAQKGAVAAIVDREL-----------PLSIPLSIPVIRVKNTLEALQQLA 97
                79********************************************...........***********************8 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.054
                 TTSCCHHHHHHHHHHTTS CS
  Mur_ligase   7 idgrgmsagalflalkGy 24 
                 + +r+m + alf+a  G+
  CCG91456.1 281 TVSREMAKNALFAAAVGF 298
                 569***********9996 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.15   8.8e+02      30      63 ..      89     122 ..      86     143 .. 0.59
   2 !   37.3   0.0     4e-13   2.4e-09      16      77 ..     331     394 ..     319     401 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.15
                   HHHHHHHHSS......SSEEEEEEEESTT.CCSCHCTHHH CS
  Mur_ligase_C  30 alkalreiap......dkrlilvfgpggelgertrtfhde 63 
                   +l+al+++a       + ++i++ g+ g      +t  +e
    CCG91456.1  89 TLEALQQLAFfyrkqlHAKIIAITGSNG------KTSTKE 122
                   5555555433445555689999999733......333344 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 4e-13
                   EEEE.T--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSE.EEE CS
  Mur_ligase_C  16 vidD.yahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasalads.lvv 77 
                   +idD y++n  s++ al+al e+  ++++i+v+g++gelge ++++h  +g  a +l  s +v+
    CCG91456.1 331 LIDDsYNANLQSTMSALRALTEFPFESEKIAVLGSMGELGEHAKALHYKLGVFAGSLPLSfIVF 394
                   69******************99977******************************999995555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2992.47
//
Query:       CCG91457.1  [L=366]
Description: phospho-N-acetylmuramoyl-pentapeptide transferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-40  136.2  12.2    9.3e-40  136.2  12.2    2.0  2  Glycos_transf_4  Glycosyl transferase family 4
      1e-05   24.8   1.1      1e-05   24.8   1.1    2.1  2  MraY_sig1        Phospho-N-acetylmuramoyl-pentapeptide-transf


Domain annotation for each model (and alignments):
>> Glycos_transf_4  Glycosyl transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.2  12.2     1e-43   9.3e-40       2     159 ..     103     290 ..     102     291 .. 0.93
   2 ?   -2.9   0.2      0.65   5.8e+03      56      64 ..     331     339 ..     297     360 .. 0.41

  Alignments for each domain:
  == domain 1  score: 136.2 bits;  conditional E-value: 1e-43
  Glycos_transf_4   2 llllltillilllGflDDv........lglkarlKlilqilaalililtld........lslttlgllltqvlielglilavlltllvivgvtN 79 
                      +l ll++l+++++GflDD+        +g++ ++Kl++q l+ +i+ ++l         ++  t+++l+  ++i++g +la+++++lv++g +N
       CCG91457.1 103 WLTLLSMLFMGAVGFLDDFrkvvqkkhYGISGKVKLAAQGLIGAIVGVVLFsdpetckhAQRLTIPFLKELNAIDIG-WLAIPFFILVVMGSSN 195
                      78999*************9888999889*****************9998889999996666666666666899****.**************** PP

  Glycos_transf_4  80 avNliDGldGlaagvsiiialalvvla...............avdgrsellllalallgallGfllfNrypAkvFmGDsgslflGlvlavlail 158
                      avNl+DGldGla+g si +a++++v++               +v+g  el +++ al+ga++Gfl++N+ypA vFmGD+gsl++G  l+v+ai+
       CCG91457.1 196 AVNLTDGLDGLATGCSIGVAFVYAVFSyvsgradmssyllipYVKGVGELTIFCSALIGACMGFLWYNCYPAAVFMGDTGSLAIGSALGVVAII 289
                      ***************************999999999999999999************************************************9 PP

  Glycos_transf_4 159 g 159
                      +
       CCG91457.1 290 I 290
                      6 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.65
  Glycos_transf_4  56 qvlielgli 64 
                      ++ +el  +
       CCG91457.1 331 HHHFELKGW 339
                      233333333 PP

>> MraY_sig1  Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   1.1   1.1e-09     1e-05       1      13 []      72      84 ..      72      84 .. 0.97
   2 ?   -3.7   0.4       1.2   1.1e+04       8      11 ..     300     303 ..     300     303 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.1e-09
   MraY_sig1  1 KkGTPTMGGvlIi 13
                K+GTPTMGG+lI+
  CCG91457.1 72 KSGTPTMGGLLIL 84
                9***********7 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.2
   MraY_sig1   8 GGvl 11 
                 GG++
  CCG91457.1 300 GGIF 303
                 9*97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:01.08
# Mc/sec: 1026.52
//
Query:       CCG91458.1  [L=228]
Description: Predicted glycosyl hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-26   91.8   0.1    4.8e-15   55.3   0.1    2.3  2  LysM           LysM domain
     0.0027   17.8   0.0       0.24   11.5   0.0    2.9  3  OapA           Opacity-associated protein A LysM-like domain
     0.0051   16.8   0.0        1.9    8.5   0.0    2.5  2  Mor            Mor transcription activator family
  ------ inclusion threshold ------
       0.11   12.5   1.0       0.14   12.1   0.2    1.7  2  MHC2-interact  CLIP, MHC2 interacting


Domain annotation for each model (and alignments):
>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   3.9e-12   1.7e-08       1      44 []      98     140 ..      98     140 .. 0.94
   2 !   55.3   0.1   1.1e-18   4.8e-15       1      44 []     162     205 ..     162     205 .. 0.98

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 3.9e-12
                 EEE-TT--HHHHHHHCTCHHHHHHHHC.TCSSCGG--TTEEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaN.nlsspdkifpGqkLkiP 44 
                 ++Vk+G++L sIA+ y+++v +l+++N  l + + + pGqk++iP
  CCG91458.1  98 HIVKEGESLLSIARHYKVSVYELKKYNpSLGD-T-LVPGQKIRIP 140
                 79*************************77776.5.*********9 PP

  == domain 2  score: 55.3 bits;  conditional E-value: 1.1e-18
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLkiP 44 
                 Y V++GD+Lw+IA++++++v+++ +aN +++p+k+++Gq+L+iP
  CCG91458.1 162 YAVRQGDSLWKIARKFHLSVKDIVDANAIKDPTKLKIGQELVIP 205
                 78*****************************************9 PP

>> OapA  Opacity-associated protein A LysM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.1     5e+03      36      50 ..      44      59 ..      32      73 .. 0.69
   2 ?    2.9   0.0     0.026   1.2e+02       5      54 ..      98     142 ..      94     159 .. 0.68
   3 !   11.5   0.0   5.3e-05      0.24       4      48 ..     161     201 ..     158     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
        OapA 36 adkplSnlksG.qkvr 50
                ++k+lS+   G q+++
  CCG91458.1 44 KGKVLSQHTGGsQNLN 59
                6788888766634444 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.026
        OapA   5 yqvkkgktLaqvFRdnnLplsdvnalakveGadkplSnlksGqkvrikln 54 
                 + vk+g++L  + R  ++++ ++ +     G+      l  Gqk+ri ++
  CCG91458.1  98 HIVKEGESLLSIARHYKVSVYELKKYNPSLGD-----TLVPGQKIRIPMA 142
                 56899999999999999988777665444433.....3445666666555 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 5.3e-05
        OapA   4 eyqvkkgktLaqvFRdnnLplsdvnalakveGadkplSnlksGqk 48 
                  y v++g++L ++ R+ +L++ d+     ++       +lk Gq+
  CCG91458.1 161 IYAVRQGDSLWKIARKFHLSVKDIVDANAIK----DPTKLKIGQE 201
                 699********************98877776....2245666665 PP

>> Mor  Mor transcription activator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0034        15      47      86 ..      78     117 ..      77     122 .. 0.90
   2 !    8.5   0.0   0.00043       1.9      46      91 ..     134     186 ..     130     202 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0034
                 S------SHHHHHHHHHHHHHHH--SS-HHHHHHHHT--H CS
         Mor  47 qqiyiPrgvklelelrdreifnefkGnnvaeLarkYglse 86 
                 q++ +P++ ++  + r+r++    +G+ + ++ar+Y++s 
  CCG91458.1  78 QNLQVPQQPQVSPHTRERSVHIVKEGESLLSIARHYKVSV 117
                 6778999999999*************************97 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00043
                 SS------SHHHHHHHH.......HHHHHHH--SS-HHHHHHHHT--HHHHHH CS
         Mor  46 GqqiyiPrgvklelelr.......dreifnefkGnnvaeLarkYglseqwiyk 91 
                 Gq+i iP++++ ++e+         ++i++  +G+ + ++ark++ls + i  
  CCG91458.1 134 GQKIRIPMAEEEMAEESmllkeadGKRIYAVRQGDSLWKIARKFHLSVKDIVD 186
                 788888877654443321111111479*********************99964 PP

>> MHC2-interact  CLIP, MHC2 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   3.2e-05      0.14      30      92 ..      14      83 ..       1      96 [. 0.67
   2 ?   -2.6   0.0       1.2   5.3e+03      85     100 ..     132     148 ..     120     156 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.2e-05
  MHC2-interact 30 alkvaglsiLv...alLiAGQavTaYfvyqQkgqitkLektsenLklellrrklpkaskP....kkmalP 92
                   +lkv ++ iLv    lL+ G ++  Y++ +  + +++ + +s+nL+ +   ++  ++++P    +++++P
     CCG91458.1 14 GLKVIAVLILVlgiHLLVIGSVAVYYLLHSKGKVLSQHTGGSQNLNFQPPSQQKMQSENPesepQNLQVP 83
                   45555555555222699999888777777777789999*******9886655555555553333777776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
  MHC2-interact  85 kP.kkmalPllslpllm 100
                     P +k+++P+++  ++ 
     CCG91458.1 132 VPgQKIRIPMAEEEMAE 148
                    56677788887766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1531.90
//
Query:       CCG91459.1  [L=393]
Description: Cell division protein FtsW [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-86  290.6  31.6    2.1e-86  290.2  31.6    1.0  1  FTSW_RODA_SPOVE  Cell cycle protein


Domain annotation for each model (and alignments):
>> FTSW_RODA_SPOVE  Cell cycle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.2  31.6   1.2e-90   2.1e-86       4     357 ..      22     374 ..      20     375 .. 0.96

  Alignments for each domain:
  == domain 1  score: 290.2 bits;  conditional E-value: 1.2e-90
  FTSW_RODA_SPOVE   4 lllvllllvilGlvmiysaslveslvlfgdsfvlfirqlvylllglivfvlllriplkfleklakllliislllLvlvkvp.lgssanGAkrWi 96 
                      l++++l l  +G+v ++sas    l + ++  +l++rq++++++gl  +++++ i++++l +l+ +lli++++lL+l +vp +g++++G+ rWi
       CCG91459.1  22 LVAIALTLLSIGIVALFSASGKFVLGKESQISSLMLRQFLWIAIGLFSCLIFSLIDYHKLLQLSNWLLIFGFFLLILCFVPgIGHKVHGSSRWI 115
                      4455555555***********8889999988*************************************************************** PP

  FTSW_RODA_SPOVE  97 rlggisiqPsEfvkialilflAavlskkkkevksrlrellillvivllilvlillqpdlgtavllliillvvlflsglslklilaivlalilvi 190
                      ++gg+++ PsEf+ki++ lf+A++ls +kk+v    + ++ ++v + l+++l+++  dlg+++l ++++++ l+l g+slk il i+++ il++
       CCG91459.1 116 SVGGFNVEPSEFSKIFISLFFARILSDAKKKVLFFVSPFFTAFVTMGLFVSLLIISGDLGSSLLYFMVFVLFLYLGGISLKWILPILGSGILFV 209
                      ****************************************************************************************777777 PP

  FTSW_RODA_SPOVE 191 aivllilledyqvkrvtslldpfkdplgsgYqviqsliAigsGGllGkGlgnsqqkleyLPeahtDfIfavigEelGlvGvllllllffllivr 284
                       iv+l++ e  +++r+ ++l   +d+ g++Yqv qsliA+gsGG+ G Glgns+qk++yLPe++tDfIf +igEelGl   ll++ l++ +i++
       CCG91459.1 210 LIVALLMPE--RRSRLLAFLAMDQDKEGKSYQVWQSLIALGSGGISGLGLGNSRQKMFYLPESTTDFIFPIIGEELGLWATLLIVGLYLSFILT 301
                      777665555..699******************************************************************************** PP

  FTSW_RODA_SPOVE 285 glriarkakdrfgsllavgivllivvqsfinigmvlGllPvtGltlPflSyGGsSllalliligillnisree 357
                      + +i+  a d+ g ++  ++++li +q++ n+g+v+GllP +G +lPf+SyGGs l+  l+++g+llni+r++
       CCG91459.1 302 AGWISLFAPDKEGLMIGTSLTSLIGIQTLANLGVVTGLLPNKGFPLPFISYGGSNLVFCLMSVGVLLNIHRQR 374
                      **********************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 2407.72
//
Query:       CCG91460.1  [L=369]
Description: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-44  150.2   0.0    7.1e-44  149.7   0.0    1.1  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
    5.6e-25   88.0   0.0    9.3e-25   87.3   0.0    1.4  1  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.022   14.3   0.0    1.5  1  Glycos_transf_1  Glycosyl transferases group 1
       0.11   12.0   0.0       0.19   11.3   0.0    1.3  1  PE-PPE           PE-PPE domain


Domain annotation for each model (and alignments):
>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.0   1.6e-47   7.1e-44       1     166 [.     190     355 ..     190     356 .. 0.98

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 1.6e-47
                      -EEEEE-SSSHHHHHCCCTSHHHHHHHHHHHHCHHHCCT-EEC---STT-TTTTCEEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT-- CS
  Glyco_tran_28_C   1 tilVtGGSqgaeaLnelvlselkllelksrelqvlhqtGkreleevkikveeltlkvevfefidkmaeaikaadLvIsRAGagtiaEllalgkp 94 
                      t++++GGSqga+ +n+l+l+ l+l+ ++++ +q++h tG++++e+    +++++  v v +f+++m+ +++ adLvIsRAGa+t+ E++a+g+p
       CCG91460.1 190 TLFIFGGSQGASGINRLMLQLLPLWIEQKETIQFIHLTGPNDYEDCLKAYSSYGYRVVVEPFSHRMNLYYSLADLVISRAGAMTLTEICAFGLP 283
                      79******************************************************************************************** PP

                      EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS---S---SSCH..CHHHHHHHH CS
  Glyco_tran_28_C  95 lIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklrlaekskasaaskfadlaer 166
                      +Il+p+p+aa +hq++Na+ l+k++aa v+e++++tp++L+ea++ +++ ++ ++e+ +a+ a ++ad+ ++
       CCG91460.1 284 SILIPYPYAAHDHQTKNARVLAKEKAAFVFEESKTTPQSLKEAIDLILNSSQLAKEMGAAAHALFKADATDK 355
                      ************************************************************999999998765 PP

>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.0   2.1e-28   9.3e-25       2     137 ..       7     143 ..       6     145 .. 0.92

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 2.1e-28
                      EEEE-SSHHHHHHHHHHHHHHHCTT-EEE.EEEETCCCHHHHHHCCT-EEEE---GHCTT..CHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC CS
  Glyco_transf_28   2 vllggGTgGhvfPalAlakeLkkegheVr.ylgtkrgleerlveeaglefepiageklrrklspknlkeilkvlkavvkakkilkeakpdavvg 94 
                      ++  gGTgGh+fP +A+a++L+++gh+    l +k   +e ++ +++++  ++++ ++++ +s k ++   k++ +++k + i+ ++kpd++++
       CCG91460.1   7 LIPCGGTGGHLFPGIAVAEKLIEKGHHPLlILSDKTVDREAIKNKKNIAWDSLPVAGWPGLFSSKIISFSIKLFDGYKKCRSIFLSFKPDLILA 100
                      6678**********************998444445555666799****************99******************************** PP

                      CCCCCCHCCCCCHCCCTTHCCCCCHCTS-ECCCCCCCCC-SCC CS
  Glyco_transf_28  95 tggyvslpaviaaplaripviihEqnaipglanktlsrtatkv 137
                      +gg++s+ +++  ++++ p+ +hE+na+pgl+++++ ++a+ v
       CCG91460.1 101 FGGFISALPLFMGAKRKLPLLVHEANAVPGLVTQLFFKRADFV 143
                      ***********************************99998765 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     5e-06     0.022      87     169 ..     256     344 ..     188     346 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5e-06
                      HHHHHCESEEEEEESSBSS-HHHHHHHHTT--EEEETTTTHCH..HCHTTT.......SEEEE-TT..-HHHHHHHHHHHHHSHHHHHHHHHHH CS
  Glycos_transf_1  87 eellknadifvlpsisEgfGivllEAmaaglpviasnaggpae..vvkdge.......tGllvkpn..naealaeairklledeelrerlgena 169
                        +++ ad+++      + +++l+E +a+glp i   ++ +a+  + k+           +++++    +++l+eai+ +l++++l++++g +a
       CCG91460.1 256 NLYYSLADLVISR----AGAMTLTEICAFGLPSILIPYPYAAHdhQTKN-ArvlakekAAFVFEESktTPQSLKEAIDLILNSSQLAKEMGAAA 344
                      3344444444444....899*************9887544332112222.235555559999999999**********************9987 PP

>> PE-PPE  PE-PPE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.1e-05      0.19      46      99 ..     187     239 ..     173     257 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.1e-05
      PE-PPE  46 agekvvvfGySqgalvasnekarlaalsepaapdqlsfvlvgnpnrpnggllar 99 
                   +++++fG Sqga  +++ + +l  l  +++ ++++f+ + +pn  +  l a 
  CCG91460.1 187 SRKTLFIFGGSQGASGINRLMLQLLPLWIEQK-ETIQFIHLTGPNDYEDCLKAY 239
                 34569*********************998888.************998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2529.03
//
Query:       CCG91461.1  [L=761]
Description: UDP-N-acetylmuramate-alanine ligase and UDP-N-acetylmuramate dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-25   89.1   0.1    1.9e-24   86.0   0.0    2.5  3  MurB_C         UDP-N-acetylenolpyruvoylglucosamine reductase,
    1.8e-20   73.1   0.0    1.2e-18   67.2   0.0    2.6  2  Mur_ligase     Mur ligase family, catalytic domain
    6.4e-20   72.0   0.0    1.3e-19   70.9   0.0    1.6  1  Mur_ligase_M   Mur ligase middle domain
    1.4e-19   70.3   0.0    3.8e-19   68.8   0.0    1.8  1  FAD_binding_4  FAD binding domain
      2e-16   60.0   0.1    9.5e-16   57.8   0.0    2.1  2  Mur_ligase_C   Mur ligase family, glutamate ligase domain
  ------ inclusion threshold ------
      0.099   12.5   0.0       0.47   10.3   0.0    2.1  2  YjeF_N         YjeF-related protein N-terminus


Domain annotation for each model (and alignments):
>> MurB_C  UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.43   1.3e+03      47      75 ..     126     155 ..      95     161 .. 0.70
   2 ?   -3.1   0.0       2.6   7.7e+03      78     108 ..     185     218 ..     178     222 .. 0.68
   3 !   86.0   0.0   6.4e-28   1.9e-24       2     120 .]     660     757 ..     659     757 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.43
                 ETTSSEEE-HHHHHHHTT-T.TSEETTEEE CS
      MurB_C  47 aeegevklsagwLIeqaglk.Glrvggaqv 75 
                 ++++++    +w+++++gl+  + +g+ ++
  CCG91461.1 126 HGKSTTSAMIAWILQECGLNpSFYLGAETI 155
                 44455556779*******998887776555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.6
                 SSTTEEEE.SS..S--HHHHHHHHHHHHHHHHHH CS
      MurB_C  78 khalflvN.gg..gataadilalarevrkkVkek 108
                  hal+++N ++      adi +++ + r+ V+++
  CCG91461.1 185 PHALVVLNiEEehLNYYADIHSIVLTFREMVAKT 218
                 5999999964322235677777777777777665 PP

  == domain 3  score: 86.0 bits;  conditional E-value: 6.4e-28
                 HHHHHHHHHHHHSHCHSTTCTCEESESB---EESHHHHHHHHEEEETTSSEEE-HHHHHHHTT-TTSEETTEEEESSSTTEEEESSS--HHHHHHHHHH CS
      MurB_C   2 ireavlelrakklmvkqpldtpsaGSfFknPivegeeaeelkeyeaeegevklsagwLIeqaglkGlrvggaqvsekhalflvNgggataadilalare 100
                 i ++ +e+  k+  ++qp    saG++FknP                     ++ag+LI+++glk + vg+a+vse+h +f++N+ggata+dil+l++ 
  CCG91461.1 660 IARELKEFSMKR-VESQP-AGSSAGCIFKNP-------------------NSIPAGKLIDELGLKNKAVGKARVSEEHGNFIINEGGATAKDILDLISL 737
                 6788999999**.7****.799*********...................258*******************************99************* PP

                 HHHHHHHHHS----BSSEEE CS
      MurB_C 101 vrkkVkekfgveLepEvvli 120
                 ++++  ek g+ Le+Evv++
  CCG91461.1 738 IQREAFEKRGIVLETEVVIL 757
                 *****************985 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   3.9e-22   1.2e-18       1      87 [.      19     117 ..      19     118 .. 0.97
   2 ?    3.0   0.0     0.042   1.3e+02      25      49 ..     400     424 ..     394     442 .. 0.84

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 3.9e-22
                 EEEEESTTSCCHHHHHHHHHHTTSEEEEEESSHC.....HHHTT-EEEES-HGGGG......EE-T.S-TTCHHHHHHHHTTEEEEEHHHHHHHHHHCC CS
  Mur_ligase   1 eihfigidgrgmsagalflalkGykvdGsdfies.....lialGaaavvghdaani......vvss.iskdnpeleaakepgipvesraeaLaelaarf 87 
                 +ih +g++g+gm ++al+l+ +Gykv+Gsd+++      lia+G + +++hd++++       +ss i+  npelea+++ gip+++ra +L+ laa++
  CCG91461.1  19 KIHLLGVCGSGMAPLALLLLARGYKVSGSDHEPTekaqkLIAHGLEFYPTHDQSQVlaadlvCYSSaIPLANPELEACRKFGIPLVKRAFLLSLLAAEK 117
                 69***********************************************************99999******************************986 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.042
                 EEEEEESSHCHHHTT-EEEES-HGG CS
  Mur_ligase  25 kvdGsdfieslialGaaavvghdaa 49 
                  vdG+ +++  +++G +av+++ ++
  CCG91461.1 400 GVDGAAIARAIREQGHPAVFFEPDE 424
                 69*******************9887 PP

>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   4.5e-23   1.3e-19       1     190 [.     122     295 ..     122     297 .. 0.83

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 4.5e-23
                   EESSS-HHHHHHHHHHHHHCT.EEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCH.CBESEEEE---TSTTHHHHSSHHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaaileka.gkvigtvgttnneiglpktlaemekkeaeyavlEvsshglgekrlegl.lkpdvavitnispdHldfhgtlenya 95 
                   v G +GK+Tt+ +ia+il++   +  + +g   ++i+l ++ +       ey+v+E  ++       + l ++p++ v++ni+++Hl ++ ++  + 
    CCG91461.1 122 VSGMHGKSTTSAMIAWILQECgLNPSFYLGA--ETISLRESARWSPG---EYMVIEGDES-----DGSFLyFSPHALVVLNIEEEHLNYYADIHSIV 208
                   7899*****************6668999996..88999998865555...**********.....4444447************************* PP

                   HHHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHHHHHHH CS
  Mur_ligase_M  96 eaKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlraknieeksegteiellevkggeleieipllGkhnvyNalaaia 190
                    +++e++++ +  +++v+n ddp+ + ++++   +k  ++ ++l+++a+ ++ k ++ +++g ++   + ++  +ei+++++G  nv+Nalaa+ 
    CCG91461.1 209 LTFREMVAKTT--DTVVYNQDDPHCQLIAEW---RKQGAINYSLRERAAAFWMK-ASTSTSGHHF--YKGEEWLCEISLAIPGIQNVQNALAALS 295
                   ********888..59********55555555...33349*********876665.5555677776..655666678999**************96 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   1.3e-22   3.8e-19       4     135 ..     497     622 ..     494     626 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 1.3e-22
                    EEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEE.STTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGS CS
  FAD_binding_4   4 vvrpeseeevaaalrlaneaglpvlvrGgGssll.gqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgipg 98 
                     ++p++e+++a +l++a+e+ lpv+++G+G++ll ++ +  +g+ ++l +  ++ +i  e++ + +++Gv+l ++v ++ +k++l gl +  gipg
     CCG91461.1 497 WAEPATEADLALLLQFAKEQALPVVWIGKGTNLLvRDGG-IKGLCIHL-AHPNFCDIRFEGHLIFAGCGVKLRNIVYEA-KKHGLGGLSFMEGIPG 589
                    579*******************************88887.********.56667999999*******************.88999999******** PP

                    BHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEE CS
  FAD_binding_4  99 tvGGaiatnagGygsekyGlirdnvlglevvladGev 135
                    ++GGa+ +nag++g ++     d+v++ ++++ +G++
     CCG91461.1 590 SLGGALRMNAGAMGGSTM----DVVKRIRFMDMEGNI 622
                    ******************....*************98 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.6   4.7e+03      37      54 ..     113     127 ..     106     142 .. 0.63
   2 !   57.8   0.0   3.2e-19   9.5e-16       2      87 ..     318     398 ..     317     401 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.6
                   HSSSSEEEEEEEESTT.C CS
  Mur_ligase_C  37 iapdkrlilvfgpggelg 54 
                   +a++k++ilv g   + g
    CCG91461.1 113 LAAEKKVILVSGM--H-G 127
                   3567999999996..4.2 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 3.2e-19
                   TTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEESS-TTSTH CS
  Mur_ligase_C   2 kgRlevvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlgdypraeds 87 
                   ++R+e+  +++ + +idDyah+p++++ +l++++     +r +++f+p  ++++r ++ +++f + +s+ ad++vv+++ +++e s
    CCG91461.1 318 RRRFELKFKGNYFELIDDYAHHPTEIKTTLSSAKGR--GRRTVALFQP--HRYSRVQKMQALFSKSFSQ-ADVVVVTEIFSAGETS 398
                   79*******************************886..79********..*******************.*********9998875 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.1   3.3e+03      16      71 ..     109     161 ..     103     167 .. 0.76
   2 ?   10.3   0.0   0.00016      0.47      17      64 ..     373     423 ..     365     443 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
      YjeF_N  16 lrallgnspaekkvlvlvGsgnnGgdglaaArhLaqegakVtvllleeeekldeda 71 
                 l +ll    aekkv+++ G +       ++A  L++ g++   +l +e  +l+e a
  CCG91461.1 109 LLSLL---AAEKKVILVSGMHGKSTTSAMIAWILQECGLNPSFYLGAETISLRESA 161
                 55666...789999999999999999999999998888888777666665666555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00016
      YjeF_N  17 rallgnspaekkvlvl.....vGsgnnGgdglaaArhLaqegakVtvllleee 64 
                 +al+ +s+++++v+v+     +G++ nG dg a+Ar ++++g+ +    +e++
  CCG91461.1 373 QALFSKSFSQADVVVVteifsAGETSNGVDGAAIARAIREQGHPAVF--FEPD 423
                 5555566777777776333337999*************999998665..4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5316.43
//
Query:       CCG91462.1  [L=309]
Description: D-alanine--D-alanine ligase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-54  184.3   0.0    2.6e-54  183.9   0.0    1.2  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    2.4e-14   53.6   0.1    1.9e-12   47.5   0.1    2.4  1  Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
    1.8e-07   31.3   0.0    3.2e-07   30.6   0.0    1.3  1  ATP-grasp_3      ATP-grasp domain
    2.7e-05   23.8   0.1    0.00012   21.7   0.1    2.0  1  ATP-grasp_4      ATP-grasp domain
     0.0011   18.5   0.0     0.0017   17.9   0.0    1.2  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
     0.0011   18.8   0.0      0.002   18.0   0.0    1.4  1  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
     0.0027   16.9   0.0     0.0051   16.0   0.0    1.4  2  TTL              Tubulin-tyrosine ligase family
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.049   13.2   0.0    1.8  2  RimK             RimK-like ATP-grasp domain
      0.025   13.8   0.0       0.12   11.5   0.0    2.0  2  ATPgrasp_ST      Sugar-transfer associated ATP-grasp
       0.03   14.6   0.1       0.48   10.8   0.0    2.3  2  PG_binding_2     Putative peptidoglycan binding domain


Domain annotation for each model (and alignments):
>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.9   0.0   1.5e-57   2.6e-54      35     204 .]     127     293 ..     105     293 .. 0.96

  Alignments for each domain:
  == domain 1  score: 183.9 bits;  conditional E-value: 1.5e-57
                      C-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHHHC.TT-EEESS- CS
  Dala_Dala_lig_C  35 lgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeaiegreievavlgneklevsevgeivvkkgfydyeakysddkaqlevpa 128
                      +g p ++Kp+r+GSS+Gv+ v ++e+++ea++++ ++d+ v+ E  i+gre++va+l+   +++++++ei +kkgfydy++ky++ ++++ +pa
       CCG91462.1 127 FGPPYVIKPSRQGSSIGVEFVYAMEDFEEAVRKSKQFDHVVIAETLIKGRELTVAILD---NQALPIVEIKPKKGFYDYQNKYTKGASEYICPA 217
                      67899*****************************************************...8999*******************9********* PP

                      ---HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS---STTSHHHHHHHCTT--HHHHHHHHHH CS
  Dala_Dala_lig_C 129 klekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlPGfTeiSlfpklakasGlefkkLvdqlie 204
                       l+k++ e++q++al+a+++l+++  +RvD++l+e+g +++ E+Nt+PG+Te+Slfp++aka+Gl+f++L ++++e
       CCG91462.1 218 LLTKSQVEAVQKTALDAFHVLGCSIYGRVDIILSENGVPWVLEINTIPGMTETSLFPMAAKAAGLNFAELCEKIVE 293
                      *************************************************************************986 PP

>> Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.1   1.1e-15   1.9e-12       2     103 .]       9      88 ..       8      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 1.1e-15
                      EEEEEE-SSTTHHHHHHHHHHHHHHCHCCTEEEEEEEE-TTS-EHHHHHHHHTTHHHTCCCCHCCCTCE--SEEEEE-TTTTTTSSHHHHHHHH CS
  Dala_Dala_lig_N   2 iavlfGGkStEhevSlvsaksvlkaldkekyeviligitkegkwkkkaekleskekkklkkeeekekkaeldvvfpvlhGkngEDGtlqgllel 95 
                      i++l GG S E+++Sl +a +v +al +  ye++ +++ +    +                  + e  ++ +++f+++hG++gEDG++q ll  
       CCG91462.1   9 ITILKGGPSEERQISLKTASAVESALFSLGYELTSVDVIN----E------------------KFELPESTEICFLCIHGTFGEDGQIQRLLMR 80 
                      89************************77779998888887....2..................334667899********************** PP

                      TT--BSS- CS
  Dala_Dala_lig_N  96 lgipyvGs 103
                       gip++Gs
       CCG91462.1  81 RGIPFTGS 88 
                      *******7 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.8e-10   3.2e-07       3     156 ..      98     263 ..      96     267 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.8e-10
                  SHHHHHHHHTTT.S---......-EESS--SSSEEEEESS-------B--SS--TTE.............EEEE---SEEEEEEEEE.SSSEEEEEEE CS
  ATP-grasp_3   3 dKlktykkLkeagvkvP..tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve......lvqefieGkplSvsllsdgekvlvlavn 92 
                  dK+ + k + + g+++P    + +e+  +   ++v+Kp++ + + +v +v + e+ e+a+ + +      ++   i+G++l+v +l ++  +l+++  
   CCG91462.1  98 DKVWSKKLFVQGGIPTPpfFVVGEEKKVPFGPPYVIKPSRQGSSIGVEFVYAMEDFEEAVRKSKqfdhvvIAETLIKGRELTVAILDNQ--ALPIVEI 193
                  88889999999999**987777888888889********999999999998888888887777778888899************99844..5554444 PP

                  EEEEET....TEEEEEEES----H......HHHHHHHHHHHHTTSTT--EEEEEEEEESS..SEEEEEEES CS
  ATP-grasp_3  93 rqliekaekefvyaGnvtpietel......keevvelaeevvekleglaGyvGvDlvlkd.eepyviEvNP 156
                  +   ++   +++y+ + +++           e v+++a ++ + l g+  y  vD++l++ + p v+E+N 
   CCG91462.1 194 KPKKGFYDYQNKYTKGASEYICPAlltksqVEAVQKTALDAFHVL-GCSIYGRVDIILSEnGVPWVLEINT 263
                  444445555677766666655443344122444555555555555.8888888******97889******5 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   6.9e-08   0.00012       4     116 ..     130     230 ..     127     267 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 6.9e-08
  ATP-grasp_4   4 PvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnil.kkefaseed..vsdrl 98 
                  P viKPs + +S+GV ++   e++++av++ ++        ++ +v     ++ E +i+G E  v ++ d++  p i++i  kk f++ ++  ++   
   CCG91462.1 130 PYVIKPSRQGSSIGVEFVYAMEDFEEAVRKSKQ--------FD-HV-----VIAETLIKGRELTVAIL-DNQALP-IVEIKpKKGFYDYQNkyTKGAS 211
                  99************************9877652........33.33.....47888888888888654.555444.4444414445443321144333 PP

  ATP-grasp_4  99 .yvtsakvieetlealeel 116
                   y+ +a +++ + ea++++
   CCG91462.1 212 eYICPALLTKSQVEAVQKT 230
                  4777777776666666655 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   9.5e-07    0.0017      38     200 ..     128     289 ..     121     293 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 9.5e-07
                  -SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEEETTS-EEEEEEEEECCEC....TCCCCEEEES-S CS
  CPSase_L_D2  38 gyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslql....rtqkvievAPsq 131
                  g P +ik++  +   G  +++  e+++e+v+k+ +         +v + + l + +e+ v +l  ++  ++ +  +  +        ++ +  + P+ 
   CCG91462.1 128 GPPYVIKPSRQGSSIGVEFVYAMEDFEEAVRKSKQFD-------HVVIAETLIKGRELTVAILDNQALPIVEIKPKKGFYDYqnkyTKGASEYICPA- 217
                  6799***********************9999988776.......79999999999******************999998776565455666666776. PP

                  S--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS..--CCH..HHHHHHHS--HHHHHH CS
  CPSase_L_D2 132 tLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtR..lsves..alaekaTGldlvkeaa 200
                   Lt+++ +a++++a+ + + +g +  g v+ +l++ ++   v+E+Nt   +   s  ++a ka Gl+ ++   
   CCG91462.1 218 LLTKSQVEAVQKTALDAFHVLGCSIYGRVDIILSE-NGVPWVLEINTIpgMTETSlfPMAAKAAGLNFAELCE 289
                  79********************************7.9999******941133222336777777777776655 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.1e-06     0.002       2     187 ..      98     263 ..      97     270 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.1e-06
                 BHHHHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---SEEEEEEEEE CS
      GARS_A   2 sKsfakdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleGeEvsllalv 100
                 +K ++k+l+ + gipt+ + ++ + +++      ++ +  V+K+++  +  gv  +   e+  +av++   +k+f    + v+ E l++G E+++ a+ 
  CCG91462.1  98 DKVWSKKLFVQGGIPTPPFFVVGEEKKVP-----FGPPY-VIKPSRQGSSIGVEFVYAMEDFEEAVRK---SKQFD---HVVIAETLIKGRELTV-AIL 183
                 799******************99988864.....56777.******9999999999887777777764...45566...778889999*****98.566 PP

                 CTTEEEE---BEEEEEEECCCEEEEECECEEEES-TTS-HHHHHHHHHHTHHHHHHHHHCTT---EEEEEEEEEEETTE.EEEEEEES CS
      GARS_A 101 dgktvkplplaqdhkrvlegDkgpnTGGmGayspapvvteellekikeeileptveglkkegipfkGvLyaglmlvedg.pkvlefnv 187
                 d++   p+   +  k  ++   +  T G   y    ++t++++e +++     ++++++  g++  G   ++++l+e+g p vle+n 
  CCG91462.1 184 DNQ-ALPIVEIKPKKGFYDYQ-NKYTKGASEYICPALLTKSQVEAVQK----TALDAFHVLGCSIYGR--VDIILSENGvPWVLEINT 263
                 765.56777888878777765.56666666665555667777776666....7889999998888885..589999999999999996 PP

>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       3.2   5.7e+03      70     103 ..     132     165 ..     130     168 .. 0.72
   2 !   16.0   0.0   2.8e-06    0.0051     241     266 ..     245     270 ..     202     278 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3.2
                 --SS---XX------BSSTHHHHHHHH..SSS-E CS
         TTL  70 IvKpsasarGkgirvfnkledikkivsqsqkepl 103
                 ++Kps +  ++g+ ++  +ed+ + v +s++ ++
  CCG91462.1 132 VIKPSRQGSSIGVEFVYAMEDFEEAVRKSKQFDH 165
                 6789998899999999998888876555555444 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 2.8e-06
                 XXXXXXXXXXXXXXXXXXXXX..XXX CS
         TTL 241 GvDilidenlkpwLlEvNasPdlkst 266
                 +vDi++ en  pw+lE+N+ P +++t
  CCG91462.1 245 RVDIILSENGVPWVLEINTIPGMTET 270
                 59*******************99876 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.4   2.5e+03     130     145 ..      18      33 ..      16      50 .. 0.72
   2 ?   13.2   0.0   2.7e-05     0.049       2     172 ..      97     270 ..      96     285 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHCT-S CS
        RimK 130 eekelAikaakamelv 145
                 ee+++ +k a a+e  
  CCG91462.1  18 EERQISLKTASAVESA 33 
                 8999***999997643 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.7e-05
                 H-HHHHHHHHHHTT-----EEEESS-S-HHHHHHTT-.-SSEEEEE-T..TTT--EEEEE.-SHHHHHHHHHHGGG--EEEEE--SS-SEEEEEEEETT CS
        RimK   2 rdKlkslklLakakikvpntalardeedaekliekiklrfPvvvKsve..gsqGikvvla.kkeqklkqvlealkeailvqeyieeaenediRvlvvdd 97 
                  dK+ s kl ++ +i++p + ++ +e+       k+ ++ P v+K +   +s+G++ v a ++ ++++   +  ++ ++    i+   ++++ v ++d+
  CCG91462.1  97 FDKVWSKKLFVQGGIPTPPFFVVGEEK-------KVPFGPPYVIKPSRqgSSIGVEFVYAmEDFEEAVRKSKQFDHVVIAETLIK---GRELTVAILDN 185
                 589999999999999999999988775.......45689999**98762256666655552444555555344555555555664...68899999*** PP

                 EEEEEEEEE--SS..S----TTTT-EEE..E----....HHHHHHHHHHHHHCT-SEEE.EE.EEEETTEEEEEEEESS--SHHH CS
        RimK  98 evvaalrrvskeG..dFRsnlhrGgvae..klqls....eeekelAikaakamelvvaG.vD.llrakrgllvlEvnsspgleki 172
                 +    ++ + k+G  d+     +G+     ++ l+    e  ++ A+ a ++++  + G vD +l ++  + vlE+n+ pg+++ 
  CCG91462.1 186 QALPIVEIKPKKGfyDYQNKYTKGASEYicPALLTksqvEAVQKTALDAFHVLGCSIYGrVDiILSENGVPWVLEINTIPGMTET 270
                 *****99999999667777777887643223344411113346788888888888888889*667777778**********9876 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.52   9.3e+02      63      81 ..     131     149 ..      94     172 .. 0.51
   2 ?   11.5   0.0     7e-05      0.12     228     270 ..     227     269 ..     222     284 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.52
  ATPgrasp_ST  63 vviKpakgsgGkGilvite 81 
                  +viKp ++ +  G+ ++ +
   CCG91462.1 131 YVIKPSRQGSSIGVEFVYA 149
                  5555555444444444433 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7e-05
  ATPgrasp_ST 228 vlelaakaaeklpglgylG.wDivldeekgplllElNarpglai 270
                  v ++a  a + ++g  + G +Di l e++ p +lE+N+ pg++ 
   CCG91462.1 227 VQKTALDAFH-VLGCSIYGrVDIILSENGVPWVLEINTIPGMTE 269
                  5566666776.4444444449********************985 PP

>> PG_binding_2  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00027      0.48       1      30 [.      10      39 ..      10      52 .. 0.85
   2 ?    1.2   0.0      0.26   4.6e+02      52      71 ..     149     168 ..     145     169 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00027
  PG_binding_2  1 tllerkpeeervlaedvaeevqaaLsrLGy 30
                  t+l+  p eer +   +a+ v++aL +LGy
    CCG91462.1 10 TILKGGPSEERQISLKTASAVESALFSLGY 39
                  6777889*********************** PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.26
  PG_binding_2  52 aveNFEnraradgeidrlVl 71 
                   a+e FE+ +r+ ++ d +V 
    CCG91462.1 149 AMEDFEEAVRKSKQFDHVVI 168
                   89***********9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2373.48
//
Query:       CCG91463.1  [L=289]
Description: Cell division septal protein FtsQ [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-10   41.1   0.0    1.7e-09   37.8   0.1    2.5  3  POTRA_1   POTRA domain, FtsQ-type
    6.1e-07   30.3   0.0    9.3e-07   29.7   0.0    1.3  1  FtsQ      Cell division protein FtsQ


Domain annotation for each model (and alignments):
>> POTRA_1  POTRA domain, FtsQ-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.79   7.1e+03       6      23 ..      23      40 ..      19      45 .. 0.78
   2 !   37.8   0.1   1.9e-13   1.7e-09       6      69 .]      82     145 ..      79     145 .. 0.96
   3 ?   -0.5   0.0      0.17   1.5e+03       8      36 ..     192     224 ..     191     228 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.79
                EEEES-SS--HHHHHHHH CS
     POTRA_1  6 vevsGnkhlsseeiikal 23
                ++v+G + ++++ i+  l
  CCG91463.1 23 LHVEGKESVPKKRIKFSL 40
                689999999999987655 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 1.9e-13
                 EEEES-SS--HHHHHHHHHTTSTT-GGGS-HHHHHHHHHH-TTEEEEEEEEETTTEEEEEEEC- CS
     POTRA_1   6 vevsGnkhlsseeiikalgiekgtslfsldleaieqrleklpwvksasVrrqwPntleitveEr 69 
                 ve+ G  ++s++e+i+a++++ g+++f l+l++i +++ ++  v++a Vrr +P+++ i++ Er
  CCG91463.1  82 VELIGSGRISKDEVIRASNVHVGDNIFNLSLKDIYSKVCSIQEVDKALVRRDLPDRVLIRIWER 145
                 7778999******************************************************998 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.17
                 EES-SS--HHHHHHHHHTTS....TT-GGGS-H CS
     POTRA_1   8 vsGnkhlsseeiikalgiek....gtslfsldl 36 
                 ++G k++ + e+ +al++      ++  f +d+
  CCG91463.1 192 IEGKKRIEEPEVSAALNLLRilenSSLHFAFDP 224
                 789999999999999988765543333445555 PP

>> FtsQ  Cell division protein FtsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0     1e-10   9.3e-07       6     116 ..     156     278 ..     152     279 .. 0.73

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1e-10
                 T.E.EEEEETT--B-C.....CCBS...S-EEE...........S.-......HHHHHCCS-HHHHH...S-SEE-SS-TTEEEE-T.TS-EEEEES.. CS
        FtsQ   6 g.gedalidaeGevfeadeeaedek...lPlltG.....pegsek.e......vlevlaelpeelkp..leiseialserrrwqlvlddgvevklgree 86 
                 + ++++ +d++G  f   e + + +   lP ++G      eg++  e      +l++l+ l+++     ++ + i +s + ++ l+++dgv++ +  ++
  CCG91463.1 156 KeNRKYCLDEKGYPFVT-E-NRE-DllsLPEMVGvplklIEGKKRiEepevsaALNLLRILENSSLHfaFDPQTIDVSRPLSIGLLTRDGVRLTFRIDH 251
                 55778**********76.2.222.1345777776544442222222245666666666666555555889***************************87 PP

                 ..TTHHHHHHT-CCHHHC..........CCC CS
        FtsQ  87 laedleeklarlvkilpqlrl.greieyiDL 116
                 l+e     ++rl+ki++  +  gr+i+ +DL
  CCG91463.1 252 LNE----QVQRLQKIYSFSQShGRKISMVDL 278
                 777....***********9777778*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1801.43
//
Query:       CCG91464.1  [L=412]
Description: Cell division ATPase FtsA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-25   88.4   0.0    2.7e-19   69.5   0.0    2.3  2  FtsA            Cell division protein FtsA
    4.4e-15   55.8   0.0    9.4e-15   54.8   0.0    1.6  1  SHS2_FTSA       SHS2 domain inserted in FTSA
    3.6e-11   42.5   0.0    8.5e-10   38.0   0.0    2.1  2  MreB_Mbl        MreB/Mbl protein
    8.5e-06   25.0   0.0       0.33    9.9   0.0    3.1  3  PilM_2          Type IV pilus assembly protein PilM;
  ------ inclusion threshold ------
       0.06   12.5   0.1       0.85    8.8   0.0    2.2  2  NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family


Domain annotation for each model (and alignments):
>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.6e-06    0.0057       1      52 [.      11      72 ..      11     197 .. 0.67
   2 !   69.5   0.0   7.6e-23   2.7e-19       1     103 []     209     376 ..     209     376 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.6e-06
                EEEEE-SSSEEEEEEETTEEEEEEEES-...-HHHHHHH.......HHHHHT--HHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxx.......xxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvhlrvigv...ggngitkd.......iakalrtaveeAerik 52
                ++++iG++k+ +avae  +   l  +g+   ++ +++k+       ++k+++ a+ eAe   
  CCG91464.1 11 VGLEIGTSKIACAVAELREGGELYLLGIaesPSLNVRKGeivdfelAQKSVHDAIVEAETKT 72
                689*************987666777777777****************************877 PP

  == domain 2  score: 69.5 bits;  conditional E-value: 7.6e-23
                 EEEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHHHHHHHT--HHHHHHHHHHH--S--.EEEEEHHHHH............................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx............................ RF
        FtsA   1 alvDiGagktdvavaedgalvhlrvigvggngitkdiakalrtaveeAerikikyGsala.ekeigrkels............................ 70 
                 +++D+Gag td +v+++g +vh+ vigvg +++t+d+a alr+++ +Ae+ik+++Gs    +++i+ k+l+                            
  CCG91464.1 209 IVIDLGAGLTDYIVYHGGIIVHSGVIGVGQDHLTNDLALALRIPFPQAEEIKKHFGSFKLgSESIK-KRLTtsnhplpeerlvsynaivkimrarqeei 306
                 69*******************************************************888744444.23335777777777888888889999999999 PP

                 .........................GGGGSTTHHHHHHHHH.......T-......HH.HT-GGGHHHHH CS
                 .........................xxxxxxxxxxxxxxxx.......xxx....xxx.xxxxxxxxxxx RF
        FtsA  71 .........................ggsalpnleelaeral.......spk....lee.vsdpeyasalg 103
                                          ggs++ ++eela++++       +p     +++ ++ p + ++lg
  CCG91464.1 307 feiikedlemqsfwphftgtiyltgGGSKIDGVEELAQKIFnypvklaEPLpfegDQSyLDRPDLYTVLG 376
                 9999************************************865555453335566555588888777776 PP

>> SHS2_FTSA  SHS2 domain inserted in FTSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   2.6e-18   9.4e-15       1      78 [.      85     163 ..      85     164 .. 0.98

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 2.6e-18
                 .....EEEEEEEEE-TTS-.E--HHHHHHHHHHH....CHTTEEEEEEEEEEEEETTTEEESB-TT-EESEEEEEEEEE CS
   SHS2_FTSA   1 Gkhiksvnskgvvaisged.eiteedvervleaakavaipedreilhvipqeyivDgqegikdPvGmsGvrLevevhvi 78 
                 G+hi+s+nsk+v+++++e+ +i+++++ ++ +  +++a+p ++ +lh + + y++D+ +  ++P+G++ ++L +e+h+i
  CCG91464.1  85 GAHIRSFNSKVVISLGEEGdRIDQKHLMELRSLVRQQALPTGQILLHDLLKTYSLDDGTLTENPIGLFSKKLTAEYHLI 163
                 89***************99**********************************************************99 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.019        68      64     100 ..      47      83 ..      44     105 .. 0.71
   2 !   38.0   0.0   2.4e-13   8.5e-10     143     305 ..     204     355 ..     193     360 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.019
                 ETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE CS
    MreB_Mbl  64 kdGviadlevaeellkyfikkvkkkkslskprvvicv 100
                 ++G i+d+e+a++ ++  i ++++k++++ ++v +++
  CCG91464.1  47 RKGEIVDFELAQKSVHDAIVEAETKTNVAIEEVYLAI 83 
                 6788888888888888888777777777777666655 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 2.4e-13
                 SSS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHH CS
    MreB_Mbl 143 epsgnmvvdiGggttevavislggivtsksvrvaGdeldeaiikyirkkynlliGertaekikieigsavkeeeeekmeikGrdlvtglpkevevssee 241
                 + +g +v+d+G+g t+  v   g iv s  + v+ d+l +++         l i+  +ae+ik++ gs +  +e+ k +++     + lp e  vs + 
  CCG91464.1 204 KMHGAIVIDLGAGLTDYIVYHGGIIVHSGVIGVGQDHLTNDLAL------ALRIPFPQAEEIKKHFGSFKLGSESIKKRLTTS--NHPLPEERLVSYNA 294
                 6789*************9999999999*************9975......5668999***********999988776666655..489*********** PP

                 HHHHHHHHHHHHHHHHHHHHHTS-..HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-S CS
    MreB_Mbl 242 vrealkepvsaiveavkevLektp..peLaadivdrgivltGGgallkgldkllseetglpvkvae 305
                 + + ++   ++i e +ke Le  +  p         +i ltGGg+++ g+++l ++ ++ pvk+ae
  CCG91464.1 295 IVKIMRARQEEIFEIIKEDLEMQSfwPHF-----TGTIYLTGGGSKIDGVEELAQKIFNYPVKLAE 355
                 ********************976523555.....55789************************997 PP

>> PilM_2  Type IV pilus assembly protein PilM;
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.1    0.0059        21       1      74 [.      12      88 ..      12     115 .. 0.76
   2 !    9.9   0.0   9.1e-05      0.33     155     235 ..     182     261 ..     169     269 .. 0.92
   3 !    7.4   0.0   0.00053       1.9     277     308 ..     326     357 ..     298     372 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0059
      PilM_2  1 GiDissssvklvelsk.kkgslrveala...ieplekdavvdreikdieavsealkrvvkklktrvkevaiavpgsav 74
                G+ i++s++  + ++  ++g+l +  +a   +  ++k+ +vd e+++ + v +a+  +  k++   +ev +a++g+ +
  CCG91464.1 12 GLEIGTSKIACAVAELrEGGELYLLGIAespSLNVRKGEIVDFELAQ-KSVHDAIVEAETKTNVAIEEVYLAISGAHI 88
                89999999875444432444444444441114558899999999987.5799999999***************99876 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 9.1e-05
      PilM_2 155 vDvesyAleraleliasqlpdkgkekvvaivdigasrttlsvlrdgkivYtreqafGgeqltqeivrrYglsleeaekkkr 235
                 +D+ +y l+  +++ ++ l  ++k +   ++d+ga  t   v++ g iv++     G ++lt++++    + + +ae+ k+
  CCG91464.1 182 IDIRNYCLSI-FATAQAVLTRSQKMHGAIVIDLGAGLTDYIVYHGGIIVHSGVIGVGQDHLTNDLALALRIPFPQAEEIKK 261
                 7999999988.788899999999999**************************************************99887 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.00053
      PilM_2 277 kilLaGGtaslpgleelleeelgisttvanpf 308
                  i+L+GG +++ g+eel ++  ++++++a+p+
  CCG91464.1 326 TIYLTGGGSKIDGVEELAQKIFNYPVKLAEPL 357
                 69****************************97 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00024      0.85     185     237 ..      23      75 ..      17      89 .. 0.87
   2 ?    1.3   0.0     0.046   1.7e+02      53      71 ..     203     221 ..     173     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00024
                     HHTTEEEEEEEEEEEECS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEE CS
  NNMT_PNMT_TEMT 185 lasllkpGGhlvlggvleeseynvGekkfsllalekeevlealkkaglkveel 237
                     ++  l++GG l l+g+ e+ + nv + ++   +l ++ v +a+++a+ k++ +
      CCG91464.1  23 AVAELREGGELYLLGIAESPSLNVRKGEIVDFELAQKSVHDAIVEAETKTNVA 75 
                     56789*****************************************9988655 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.046
                     SSS-ECEEEEET-TT--GG CS
  NNMT_PNMT_TEMT  53 gekkgdtllDiGaGPTvyq 71 
                     ++ +g  ++D+GaG T y 
      CCG91464.1 203 QKMHGAIVIDLGAGLTDYI 221
                     4567899*******99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3141.63
//
Query:       CCG91465.1  [L=370]
Description: Cell division GTPase FtsZ [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-15   57.6   0.0    1.1e-14   55.1   0.0    2.2  2  Tubulin   Tubulin/FtsZ family, GTPase domain


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   6.2e-19   1.1e-14       3     193 ..       5     160 ..       3     164 .. 0.93
   2 ?   -1.6   0.0      0.15   2.7e+03      19     114 ..     305     317 ..     260     353 .. 0.65

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 6.2e-19
                 EEEEEHHHHHHHHHHHHH...HHHCH....HHHT.....TTEEEEE....EEESBHHHHHTS-GS......EEEE--CCCCTTC--TT-HHHHHHHHHH CS
     Tubulin   3 ivigvGqcGnqignelwellakehgiqsdgdslesfFsesgkveyiprsvaidtdpqvlneikagselfnpnklllgkegagnngaggypevgkeaaee 101
                 +v+g+G +G+++++e++     e                + ++ ++    a+d d ++++ + a+      +++llgke ++++g  g+ e++ ++ ee
  CCG91465.1   5 VVVGIGRAGINLLDEWIL---AE----------------EPSGLLY----ALDADFSTVEGSLAE------RRMLLGKEATKGLGTCGDLELALKIFEE 74 
                 789999999999999888...22................3446677....9**************......**************************** PP

                 THHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--GG.G-HHHHHHHHHHHHHHHHT-SEEEEEEHHHHH CS
     Tubulin 102 ileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPsefsevvvepynailalkelieesdavividNdaLl 193
                  + +i++ +e+c++   ++++++lgG  GS+  ++  +++ e+   +++ ++  lP++  e  ++   a  +++el e  ++ i+++N++ +
  CCG91465.1  75 EEPRIEQILEDCEH---LLVLSGLGGAMGSAGLQFFSKKAAER--VKTLSSIAFLPFHS-EAFLRRDTARKTVQELLEFPHQFIFFSNEKAK 160
                 **************...**************************..89**********87.*****************************976 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.15
                 HH...HHHCH....HHHT.....TTEEEEE....EEESBHHHHHTS-GS......EEEE--CCCCTTC--TT-HHHHHHHHHHTHHHHHHHHTT-S CS
     Tubulin  19 wellakehgiqsdgdslesfFsesgkveyiprsvaidtdpqvlneikagselfnpnklllgkegagnngaggypevgkeaaeeileeirkevekcd 114
                 +                                                                                   + e++k++e++d
  CCG91465.1 305 I-----------------------------------------------------------------------------------ETEVEKQLERTD 317
                 3...................................................................................333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2775.89
//
Query:       CCG91466.1  [L=381]
Description: Xre family transcriptional regulator fused to periplasmic substrate-binding domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-45  153.2   0.0      7e-45  152.5   0.0    1.2  1  PBP_like        PBP superfamily domain
    8.5e-15   54.6   0.1    2.6e-14   53.0   0.1    1.9  1  HTH_3           Helix-turn-helix
    1.3e-10   41.2   0.0    3.2e-10   39.9   0.0    1.6  1  HTH_19          Helix-turn-helix domain
    3.7e-10   40.0   0.1    9.1e-10   38.7   0.1    1.6  1  HTH_31          Helix-turn-helix domain
    0.00013   21.4   0.0    0.00022   20.7   0.0    1.3  1  LysR_substrate  LysR substrate binding domain
    0.00021   21.1   0.0    0.00048   19.9   0.0    1.6  1  HTH_25          Helix-turn-helix domain
    0.00054   20.3   0.0     0.0011   19.3   0.0    1.5  1  HTH_26          Cro/C1-type HTH DNA-binding domain
     0.0015   18.2   0.0     0.0023   17.6   0.0    1.3  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
     0.0039   17.1   0.1     0.0077   16.2   0.1    1.5  1  HTH_11          HTH domain
     0.0051   16.3   0.1      0.018   14.6   0.0    2.0  2  HTH_24          Winged helix-turn-helix DNA-binding
     0.0064   16.3   0.0      0.011   15.5   0.0    1.3  1  SBP_bac_11      Bacterial extracellular solute-binding protei
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.025   14.1   0.0    1.5  1  Sigma70_r4      Sigma-70, region 4
      0.012   15.5   0.0      0.029   14.2   0.0    1.7  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
      0.012   15.3   0.0      0.017   14.8   0.0    1.3  1  PBP_like_2      PBP superfamily domain
      0.017   14.8   0.1      0.092   12.4   0.0    2.2  3  GntR            Bacterial regulatory proteins, gntR family
      0.024   14.4   0.5      0.065   13.0   0.1    1.9  2  HTH_38          Helix-turn-helix domain
      0.075   12.7   0.0        0.3   10.8   0.0    2.0  2  Sigma70_r4_2    Sigma-70, region 4
       0.12   12.2   0.3       0.33   10.8   0.0    1.8  2  HTH_23          Homeodomain-like domain
       0.15   12.1   0.0       0.37   10.8   0.0    1.6  1  HTH_Crp_2       Crp-like helix-turn-helix domain
       0.15   11.9   1.2       0.63    9.9   0.0    2.5  3  HTH_AsnC-type   AsnC-type helix-turn-helix domain
        0.2   11.4   0.0       0.35   10.6   0.0    1.3  1  HTH_psq         helix-turn-helix, Psq domain


Domain annotation for each model (and alignments):
>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.0   8.2e-48     7e-45       8     193 .]     172     355 ..     167     355 .. 0.94

  Alignments for each domain:
  == domain 1  score: 152.5 bits;  conditional E-value: 8.2e-48
                 -TTCEEEEEES-HHHHHHHHHTTS-SEEEESS---CCCHHCCCCCEEEEEEEEEEEE-CC-HCHCCCCHCCHHHS--BGGGC-S-B-EEEEE-TTSHHH CS
    PBP_like   8 npgvrvavanvGsggGlkalrageadiagshlldketeeynapalrkaldgievvlvnlarreqglvvakgnpkkitnwkdladaplrlvnRetGSGtr 106
                  +++++ +    s+++l++l+ g a+++g+h +++ + + n++   +al+++   +  + ++e+g+vv++gnp++i++++dl ++++r+vnRe GSGtr
  CCG91466.1 172 YSDFKLWWFRQPSLKALSSLQLGFAHVGGFHFPKE-HPKNNIASGTEALAKTGGLIFAFSKWEEGFVVKPGNPLNIRQVEDLLRKNIRFVNREDGSGTR 269
                 577888888889**********************7.667777777779999999********************************************* PP

                 HHHHHHHC-CEECTE-SSTTSEEESSHHHHHCCHCCETTCCECCCGG-HCCCCCCECTTCE-EEEEEEEECTCCCSHHHHHHHHHHC CS
    PBP_like 107 dlfdellkkegiskssikgyaqearshlavaaaVaagradvgvgieavaeelkgldfvplaeerydlvvrkealddpevqafleflk 193
                 +l+d+ll+k+gi++ +i+gy  e  + l+va+aV  g advg++ +a+a e+ +ldfvpl e ++ l+++ +   +p+v++fl+flk
  CCG91466.1 270 ILLDSLLNKAGIQPHQINGYPIELPTALDVAKAVGYGFADVGLSSRACA-EITSLDFVPLYEMEFWLAIPHDLILQPAVEKFLDFLK 355
                 *************************************************.699********************************96 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.1   3.1e-17   2.6e-14       1      55 []      16      70 ..      16      70 .. 0.95

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 3.1e-17
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsldel 55
                l+  R  +glsq+eLA k+Gvsr+ti ++EnG+  P+  ++++la++Lg s ++l
  CCG91466.1 16 LRLTRIGKGLSQKELASKIGVSRQTIHAMENGRYVPNTAVALRLARVLGKSVEFL 70
                6778999********************************************9876 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   3.7e-13   3.2e-10       4      60 ..      16      71 ..      14      72 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 3.7e-13
      HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyll 60
                L+  R+ +gl+q+ela+++g+sr  i+a Eng++ vp+  + l++a+ lg ++e l+
  CCG91466.1 16 LRLTRIGKGLSQKELASKIGVSRQTIHAMENGRY-VPNTAVALRLARVLGKSVEFLF 71
                7899*****************************9.*****************99987 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.1   1.1e-12   9.1e-10       6      55 ..      16      64 ..      15      68 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.1e-12
      HTH_31  6 LralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralg 55
                Lr  R   GLsq+e+A  +gvs+ t++ +E+Gr  +p  av  +lar+lg
  CCG91466.1 16 LRLTRIGKGLSQKELASKIGVSRQTIHAMENGRY-VPNTAVALRLARVLG 64
                78889999**************************.7*************9 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.6e-07   0.00022      99     206 ..     250     356 ..     233     358 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.6e-07
                     GGGCT..SEEEEESTTSTHHHHHHHHHHCTTEEC.EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETT CS
  LysR_substrate  99 edLad..eplilleegsglrdlledalreaglkp.rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkg 190
                     edL +   +++ +e+gsg+r ll+ +l +ag++p ++     +l ++l+ ++a +G +++   + +++ a+  +  l++ +  +++e++l+ +++
      CCG91466.1 250 EDLLRknIRFVNREDGSGTRILLDSLLNKAGIQPhQINGYPIELPTALDVAKA-VGYGFADVGLSSRACAE--ITSLDFVP-LYEMEFWLAIPHD 340
                     555554478999**********************9888888888888887555.66666666665565555..77777777.666********** PP

                     CCCHHHHHHHHHHHHH CS
  LysR_substrate 191 relspavrafidflre 206
                       l+pav+ f+dfl++
      CCG91466.1 341 LILQPAVEKFLDFLKS 356
                     *************985 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   5.7e-07   0.00048       2      35 ..      16      49 ..      15      65 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 5.7e-07
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT-- CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEeddf 35
                Lr  R  +gls +e+a ++ ++ ++++a+E++++
  CCG91466.1 16 LRLTRIGKGLSQKELASKIGVSRQTIHAMENGRY 49
                8999****************************87 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.3e-06    0.0011       8      63 .]      22      76 ..      16      76 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.3e-06
      HTH_26  8 drgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLleyepd 63
                 +g++++eLa ++g+s++t++ + +g+   +++ +  +++++Lg +++ L+ y pd
  CCG91466.1 22 GKGLSQKELASKIGVSRQTIHAMENGR-YVPNTAVALRLARVLGKSVEFLFPYSPD 76
                5899***********************.58899***********999999988887 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.7e-06    0.0023      89     169 ..     236     319 ..     184     331 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.7e-06
                     EEEETTSS..--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--HHHHSSEE.EE--HHHHHHHHHTTSSSEEEEEHHHHH CS
  Phosphonate-bd  89 iivradsd..iqsledLkgktiafvspsStsGylvpaalLvkeagldpeddfsev.fsgshdaavlavlsgdadaaavsadale 169
                     ++v+++++  i+++edL  k+i fv ++  sG+ + +  L+++ag++p +  ++     +   +++av  g ad++  s  ++e
      CCG91466.1 236 FVVKPGNPlnIRQVEDLLRKNIRFVNREDGSGTRILLDSLLNKAGIQPHQINGYPiELPTALDVAKAVGYGFADVGLSSRACAE 319
                     788999975578*************************************99888888999999999999999999998877765 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   9.1e-06    0.0077      16      33 ..      25      42 ..      16      43 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.1e-06
      HTH_11 16 isgeeLAeeLnvSrrtvr 33
                +s +eLA +++vSr+t++
  CCG91466.1 25 LSQKELASKIGVSRQTIH 42
                99***************8 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.1e-05     0.018      17      36 ..      24      43 ..      22      44 .. 0.93
   2 ?   -3.6   0.0       9.9   8.5e+03      27      35 ..     310     318 ..     310     320 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-05
      HTH_24 17 risqreLAerlglSpstvnr 36
                ++sq+eLA ++g+S++t+++
  CCG91466.1 24 GLSQKELASKIGVSRQTIHA 43
                79***************986 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 9.9
      HTH_24  27 lglSpstvn 35 
                 +glS+ ++ 
  CCG91466.1 310 VGLSSRACA 318
                 79**99997 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.3e-05     0.011      83     217 ..     236     356 ..     227     361 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-05
                 EEESTT-TT---SHHHHHHSS--EEEE--T-TTTTHH.H..HHHGGG--HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEHHHHH..HSTTSSE CS
  SBP_bac_11  83 iavpkgnpkkikgwadLlkpglklavadPttspsGlaal..alleaagaqellkalekkvvklgessrqlltaveageadagivyeseakaaengdkle 179
                 ++v++gnp +i++++dLl+++++++      ++sG+++l  +ll++ag   ++    ++ + + +++ ++++av+ g ad+g++ +  a      + l+
  CCG91466.1 236 FVVKPGNPLNIRQVEDLLRKNIRFVNRE---DGSGTRILldSLLNKAG---IQPHQINGYPIELPTALDVAKAVGYGFADVGLSSRACAE----ITSLD 324
                 89******************99887554...7888865556*******...99999999999***********************99998....78999 PP

                 EEE--TTT--...EEEEEEEE-TT--HHHHHHHHHTTS CS
  SBP_bac_11 180 avylpeglnldpldypaavlkkaakreaAraFlafLrs 217
                 +v+l e+         +a++ +   + a ++Fl+fL+s
  CCG91466.1 325 FVPLYEMEFW------LAIPHDLILQPAVEKFLDFLKS 356
                 9988776543......3333333334578888888887 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.9e-05     0.025      13      39 ..      16      43 ..      14      46 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.9e-05
                HHHHH.TTT--HHHHHHHHTS-HHHHHH CS
  Sigma70_r4 13 lelrf.geglTleEIgerlgiSrerVrq 39
                l+l + g+gl+++E++ + g+Sr +++ 
  CCG91466.1 16 LRLTRiGKGLSQKELASKIGVSRQTIHA 43
                5566679******************986 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.4e-05     0.029      10      36 ..      26      51 ..      21      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.4e-05
  YdaS_antitoxin 10 gqkaLAealgvsqqaVsqWlkgkkqvp 36
                    +qk+LA ++gvs+q+++ + +g + vp
      CCG91466.1 26 SQKELASKIGVSRQTIHAMENG-RYVP 51
                    8*****************9887.5455 PP

>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0     2e-05     0.017     121     162 ..     230     284 ..     200     339 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2e-05
  PBP_like_2 121 tnWnd..............vlglpadgpIkvvhrsdgsgttflfstalaeqgpwta 162
                 ++W +              v  l+  ++I++v r+dgsgt+ l+ + l+++g++++
  CCG91466.1 230 SKWEEgfvvkpgnplnirqVEDLL-RKNIRFVNREDGSGTRILLDSLLNKAGIQPH 284
                 677777777777777788666666.99**********************9977663 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011     0.092      18      41 ..      19      41 ..       5      43 .. 0.83
   2 ?   -3.0   0.0       7.1     6e+03       3      14 ..     247     258 ..     245     265 .. 0.85
   3 ?   -1.4   0.0       2.3   1.9e+03      53      64 .]     259     270 ..     255     270 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
                S-TTSB---HHHHHHHHTS-HHHH CS
        GntR 18 lrpGdkLPsereLaaefgVsrttv 41
                +r G  L s++eLa+++gVsr+t+
  CCG91466.1 19 TRIGKGL-SQKELASKIGVSRQTI 41
                468999*.***************9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.1
                 HHHHHHHHHHHH CS
        GntR   3 eqvyerLredIl 14 
                 +qv++ Lr  I+
  CCG91466.1 247 RQVEDLLRKNIR 258
                 789999999886 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.3
                 SEEEETTCEEEE CS
        GntR  53 lverrqgrGtfV 64 
                  v r++g+Gt++
  CCG91466.1 259 FVNREDGSGTRI 270
                 689*******97 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   7.6e-05     0.065      19      37 ..      23      41 ..      18      42 .. 0.92
   2 ?   -2.8   0.0       6.7   5.7e+03      26      33 ..      59      66 ..      58      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.6e-05
      HTH_38 19 eGlslreIArrLgrspsTI 37
                +Gls++e A ++g+s++TI
  CCG91466.1 23 KGLSQKELASKIGVSRQTI 41
                8****************** PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.7
      HTH_38 26 IArrLgrs 33
                 Ar Lg+s
  CCG91466.1 59 LARVLGKS 66
                69****98 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00035       0.3      25      44 ..      23      42 ..      19      44 .. 0.91
   2 ?   -2.7   0.0       5.9     5e+03      18      29 ..      56      67 ..      52      68 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
                  S---HHHHHHHHT--HHHHH CS
  Sigma70_r4_2 25 eglsykEIAellgisegtVk 44
                  +gls+kE A+++g+s +t+ 
    CCG91466.1 23 KGLSQKELASKIGVSRQTIH 42
                  69****************86 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.9
                  HHHHHHTS---H CS
  Sigma70_r4_2 18 ifllryleglsy 29
                  ++ l ++ g+s 
    CCG91466.1 56 ALRLARVLGKSV 67
                  556666666664 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00038      0.33      12      34 ..      17      41 ..      16      45 .. 0.85
   2 ?   -2.7   0.0       6.7   5.7e+03      10      20 ..      56      67 ..      54      68 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00038
      HTH_23 12 lllae..GlsvreIAreLgvsrrTv 34
                +l +   Gls++e A + gvsr+T+
  CCG91466.1 17 RLTRIgkGLSQKELASKIGVSRQTI 41
                5666566*****************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.7
      HTH_23 10 illllae.Glsv 20
                +l+l+++ G+sv
  CCG91466.1 56 ALRLARVlGKSV 67
                677777777776 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00043      0.37      21      38 ..      24      41 ..       8      44 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00043
                EHHHHHHHHHTTSSHHHH CS
   HTH_Crp_2 21 pltqeelAsmlGltretv 38
                 l+q+elAs +G++r+t+
  CCG91466.1 24 GLSQKELASKIGVSRQTI 41
                59***************8 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00074      0.63      19      36 ..      26      43 ..      24      43 .. 0.91
   2 ?   -3.3   0.1       9.9   8.5e+03      34      40 ..      55      61 ..      53      66 .. 0.53
   3 ?   -0.9   0.0       1.8   1.6e+03      27      36 ..     310     319 ..     308     319 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00074
  HTH_AsnC-type 19 syaeLAervGlSestvlr 36
                   s +eLA ++G+S++t+++
     CCG91466.1 26 SQKELASKIGVSRQTIHA 43
                   889************985 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.9
  HTH_AsnC-type 34 vlrRvrr 40
                   v+ R++r
     CCG91466.1 55 VALRLAR 61
                   5555544 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.8
  HTH_AsnC-type  27 vGlSestvlr 36 
                    vGlS  ++++
     CCG91466.1 310 VGLSSRACAE 319
                    9*******85 PP

>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00041      0.35      15      39 ..      22      47 ..      18      50 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00041
     HTH_psq 15 Gk.mSirkAArkYgiPrsTLwrrkrg 39
                Gk +S+ ++A+k g++r T++   +g
  CCG91466.1 22 GKgLSQKELASKIGVSRQTIHAMENG 47
                444*****************966555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2863.45
//
Query:       CCG91467.1  [L=617]
Description: ABC-type multidrug transport system, ATPase and permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-38  131.0   0.7    7.8e-38  130.1   0.0    1.8  2  ABC_tran      ABC transporter
    4.2e-31  108.6  16.0    5.3e-31  108.3  16.0    1.1  1  ABC_membrane  ABC transporter transmembrane region
    1.3e-08   35.0   2.7    0.00021   21.2   0.3    2.5  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    6.1e-05   22.6   0.2      0.042   13.3   0.0    2.4  2  SMC_N         RecF/RecN/SMC N terminal domain
    0.00042   20.1   0.0    0.00085   19.1   0.0    1.5  1  DEAD          DEAD/DEAH box helicase
    0.00045   20.8   0.2     0.0026   18.3   0.0    2.1  2  AAA_23        AAA domain
     0.0063   16.5   0.1       0.24   11.4   0.0    2.5  2  ResIII        Type III restriction enzyme, res subunit
     0.0073   15.2   0.0      0.027   13.3   0.0    1.8  2  ABC_ATPase    Predicted ATPase of the ABC class
     0.0081   15.9   0.1      0.021   14.5   0.1    1.7  1  AAA_29        P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.013   15.7   0.1      0.058   13.7   0.1    2.2  1  AAA_22        AAA domain
      0.018   15.5   0.4       0.23   11.9   0.0    2.6  2  AAA           ATPase family associated with various cellular 
      0.018   14.8   0.1      0.018   14.8   0.1    2.2  3  AAA_15        AAA ATPase domain
      0.023   13.7   0.0      0.044   12.8   0.0    1.4  1  T2SSE         Type II/IV secretion system protein
      0.038   14.1   0.7      0.092   12.8   0.0    1.9  2  DUF87         Helicase HerA, central domain
      0.048   13.2   0.0       0.16   11.5   0.0    1.8  2  AAA_25        AAA domain
       0.05   14.0   0.1       0.13   12.6   0.1    1.8  1  AAA_16        AAA ATPase domain
       0.11   11.8   0.0        0.2   10.9   0.0    1.3  1  Zeta_toxin    Zeta toxin
       0.18   12.1   0.0       0.52   10.6   0.0    1.8  1  AAA_19        AAA domain
        0.5    7.8   2.1        0.3    8.6   0.0    1.5  2  DUF3584       Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2       4.7   4.4e+03      53      80 ..     212     247 ..     206     278 .. 0.53
   2 !  130.1   0.0   8.3e-41   7.8e-38       1     137 []     386     535 ..     386     535 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.7
                 -HHHCCHCEEEE-SS--S-TTSBHHHH..........H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx..........x RF
    ABC_tran  53 eleslrkeigvlpqepqlfpeltvren..........e 80 
                 + ++ +k+ +v +qe++l  e++  e+           
  CCG91467.1 212 TAKIREKSTRVQEQESNLLAETS--ERissmrliqafS 247
                 45566666777777777766663..3322444444443 PP

  == domain 2  score: 130.1 bits;  conditional E-value: 8.3e-41
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................esde 83 
                 lkn+s+++++ge+vaivG++G+GK+t+l+ll++ ++p eG i++dg dl++ +++slr++i+ + q++ lf+++ v+en                ++++
  CCG91467.1 386 LKNISFTINPGERVAIVGPTGSGKTTILSLLCRFYDPIEGAITIDGIDLRSLTKKSLRQHISLVLQDTILFNTT-VEENikfgkegsshdqiiqaAKEA 483
                 79*****************************************************************9999988.***********8888888777777 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  ++ ++++l   +  dt+v+++++ LSgGq+qr+ lara+l+++++lllDEpt+
  CCG91467.1 484 SVDSFITQLPKGY--DTIVGEKGALLSGGQRQRIGLARAFLRNSPILLLDEPTS 535
                 7888888888777..*************************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3  16.0   5.6e-34   5.3e-31       1     274 []      42     324 ..      42     324 .. 0.96

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 5.6e-34
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH.........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST CS
  ABC_membrane   1 liliillailagvlsplfplvlgrildtlldkgdpet.........ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqp 88 
                   l+l+ +l+il+ +l++l p+  + ++d++l k  ++          ++  + + +l+l++l+ ++l+ll ++ll+ +g  +  +lr+++f  + ++p
    CCG91467.1  42 LLLCAFLIILSVGLNILRPWPVKWLIDDVLLKTINHLphgykhnlmTTAFIGCAALFLIYLIHSQLTLLINSLLYRIGLSALLKLRTDTFSILQYLP 138
                   57899999************99999999998766666778888886556666788999*************************************** PP

                   HHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  89 msffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeE 185
                   ++f++++++G+++ r++ d +++ ++l + ++++f s l+++g+l vm+ l+ +l+   l+i+pl+  ++   + ++++ + + q++ +++ + + E
    CCG91467.1 139 LRFHESTKSGDIVYRIAYDSQSILTMLIRGFSTIFSSSLLLIGTLFVMLKLNLYLATTALGIAPLLWAIISANTAKIREKSTRVQEQESNLLAETSE 235
                   ************************************************************************************************* PP

                   HHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 186 slsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                    +s +r ++af +ee+ +  feka  + ++a++ ++ +++l++  +++ + + +al+l++Gt  v +g ls+g+l +fls++a l +++
    CCG91467.1 236 RISSMRLIQAFSKEEESIASFEKAAWNSLNANFEYLQTSNLSSLLITMTTAFGTALILFIGTNEVWKGRLSIGQLWIFLSYLASLYQPM 324
                   ***********************************************************************************998886 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   5.9e-05     0.056       3      26 ..     400     432 ..     399     478 .. 0.63
   2 !   21.2   0.3   2.2e-07   0.00021     236     302 ..     506     568 ..     467     569 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.9e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarl............d 26 
                 +++Gp gsGK+++L +l   +r+            +
  CCG91467.1 400 AIVGPTGSGKTTILSLL---CRFydpiegaitidgI 432
                 79**************9...4433334333333322 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 2.2e-07
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHP....kllrrllellkelsrngaQviltTHSplll 302
                  lS G+++ ++l+ a+lr     ++ll+DEp ++L+     +l+++ll l+k++++     +++TH  +++
  CCG91467.1 506 LLSGGQRQRIGLARAFLRNS---PILLLDEPTSSLDLktelELMSSLLHLMKNKTT-----LFVTHRLHII 568
                 4599**9999*******999...******************************999.....9999977765 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0041       3.9      27      42 ..     399     414 ..     386     420 .. 0.81
   2 !   13.3   0.0   4.5e-05     0.042     136     211 ..     506     577 ..     429     583 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0041
                 EEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlld 42 
                  aivGp GSGK+ +l 
  CCG91467.1 399 VAIVGPTGSGKTTILS 414
                 68**********9985 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 4.5e-05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                 lLSgG+++ + la  f     + +p+ llDe  + LD k   ++ + l +  kn   + +++r ++++  ++++ +
  CCG91467.1 506 LLSGGQRQRIGLARAF----LRNSPILLLDEPTSSLDLKTELELMSSLLHLMKNKTTLFVTHRLHIIHSWERILVI 577
                 79*****988877665....899**************998888887777788888888899999999888877655 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     9e-07   0.00085      11     137 ..     393     540 ..     384     566 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 9e-07
                 HHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS................TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET...TSSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxx RF
        DEAD  11 ilgggdvlvaaeTGsGKTlaflipvlqivyet................kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig...gvaardq 90 
                 i  g+ v + ++TGsGKT++ ++ +   +y+                 k++ +  + +v   + L + t+++  kf+k+ + +   ii+   + + ++ 
  CCG91467.1 393 INPGERVAIVGPTGSGKTTILSLLCR--FYDPiegaitidgidlrsltKKSLRQHISLVLQDTILFNTTVEENIKFGKEGS-SHDQIIQaakEASVDSF 488
                 55799**************9766555..77778788999999999998555556666777777899999999999999733.33344441115555666 PP

                 HHHHHTTCSEEEEEHHHHHHHHHCTSSH.....CTTEEEEEEETHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxx RF
        DEAD  91 lskldngvdivvgtpgrlddllstgkln.....lsqvrflVlDEadrlldqg 137
                 +++l +g+d +vg  g l++  +++++      l++  +l lDE    ld +
  CCG91467.1 489 ITQLPKGYDTIVGEKGALLSGGQRQRIGlarafLRNSPILLLDEPTSSLDLK 540
                 6777799************988777766557778888999999988877763 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.7   1.6e+03     122     142 ..     230     250 ..     198     336 .. 0.61
   2 !   18.3   0.0   2.7e-06    0.0026      22      40 ..     399     417 ..     378     419 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.7
      AAA_23 122 sellgskkiilnlilflgqer 142
                   + + + ++++li+ + +e+
  CCG91467.1 230 LAETSERISSMRLIQAFSKEE 250
                 111111111223333332222 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 2.7e-06
      AAA_23  22 tlItGpNGaGKTTildAik 40 
                 ++I+Gp+G+GKTTil  ++
  CCG91467.1 399 VAIVGPTGSGKTTILSLLC 417
                 59*************8877 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00025      0.24      21      78 ..     393     446 ..     370     512 .. 0.70
   2 ?    2.4   0.0      0.15   1.4e+02      42      71 ..     543     572 ..     540     595 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
                 ..TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGT CS
      ResIII  21 skrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkfl 78 
                 ++  +r+ i+ +TG+GKT ++  l++ +   ++     + +++++l + t++ +++ +
  CCG91467.1 393 INPGERVAIVGPTGSGKTTILSLLCRFYDPIEG----AITIDGIDLRSLTKKSLRQHI 446
                 36778999************9998887776533....345555555555555555554 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.15
                 HHHHHHH-S.....-EEEEESSHHHHHHHH CS
      ResIII  42 aklierllkkgkeekflflvprkslleqtl 71 
                 ++l+ +ll+  k++ +lf+ +r++++  ++
  CCG91467.1 543 LELMSSLLHLMKNKTTLFVTHRLHIIHSWE 572
                 6788899999999999*****999988775 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.79   7.5e+02     247     264 ..     399     416 ..     390     425 .. 0.82
   2 !   13.3   0.0   2.8e-05     0.027     299     379 ..     482     563 ..     477     582 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.79
                 EEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 247 tlIvGggfhGKsTLLeAl 264
                 ++IvG+   GK+T+L+ l
  CCG91467.1 399 VAIVGPTGSGKTTILSLL 416
                 57************9755 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.8e-05
                 EE--TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHC CS
  ABC_ATPase 299 gvDispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdr 379
                 ++ + +Fi++LP+g dt      +  SG   q   +++a  +++++lL+DE ts   l    e+m++l++  k+  t +v  
  CCG91467.1 482 EASVDSFITQLPKGYDTIvGEKGALLSGGQRQRIGLARAFLRNSPILLLDEPTSSLDLKTELELMSSLLHLMKNKTTLFVTH 563
                 567889**********9855566678******************************************99888888888765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   2.2e-05     0.021      16      39 ..     390     413 ..     385     417 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.2e-05
      AAA_29  16 tieidlkgatlltGpsGsGKSTll 39 
                 +++i++ + + ++Gp+GsGK+T+l
  CCG91467.1 390 SFTINPGERVAIVGPTGSGKTTIL 413
                 5678888899************98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   6.2e-05     0.058       9      61 ..     400     447 ..     396     568 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.2e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsstsskdllrell 61 
                 +++G++G+GKTt l  l + +d       e++ ++  ++l s+t  k+l++++ 
  CCG91467.1 400 AIVGPTGSGKTTILSLLCRFYDPI-----EGAITIdGIDLRSLT-KKSLRQHIS 447
                 79***************9999632.....577777777777777.666666654 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       6.7   6.3e+03      71      71 ..     246     246 ..     206     289 .. 0.51
   2 ?   11.9   0.0   0.00024      0.23       2      38 ..     400     465 ..     399     579 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.7
                 H CS
         AAA  71 a 71 
                 +
  CCG91467.1 246 F 246
                 1 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00024
                 EEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSS...........................S CS
         AAA   2 llyGppGtGKTllakavakelg..vefleisgsellsk...........................y 38 
                  ++Gp G GKT++ + +++  +     ++i+g +l+s                             
  CCG91467.1 400 AIVGPTGSGKTTILSLLCRFYDpiEGAITIDGIDLRSLtkkslrqhislvlqdtilfnttveeniK 465
                 589****************98554334666666666332223333455555555555555555552 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       2.4   2.3e+03     205     256 ..     217     260 ..     196     285 .. 0.54
   2 ?   14.8   0.1   1.9e-05     0.018      25      84 ..     398     461 ..     386     498 .. 0.70
   3 ?   -2.0   0.2       2.4   2.3e+03     325     369 .]     526     568 ..     515     568 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.4
      AAA_15 205 nvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkkl 256
                 + s+   e++s+ll ++ e+i++         +l++++++ +e++  ++k  
  CCG91467.1 217 EKSTRVQEQESNLLAETSERISS--------MRLIQAFSKEEESIASFEKAA 260
                 33333334444444444444433........233444444444444444433 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.9e-05
      AAA_15  25 ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdvef........a 84 
                    ++G+ +sGK++il +l  F +      + +i+i+  dl+   ++s  + i + ++         +
  CCG91467.1 398 RVAIVGPTGSGKTTILSLLCRFYDPI----EGAITIDGIDLRSLTKKSLRQHISLVLQDtilfnttvE 461
                 678*********************99....9999*******999999999999988888333322220 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.4
      AAA_15 325 villiEEPEahLHpqaqkvlikllkelandnktQviitTHSphii 369
                  ill++EP  +L  +   +l+ +l+ l +++   +++ TH  hii
  CCG91467.1 526 PILLLDEPTSSLDLKTELELMSSLLHLMKNKT--TLFVTHRLHII 568
                 6899999999999999999*********9996..99999999997 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.6e-05     0.044     120     156 ..     387     423 ..     343     448 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.6e-05
       T2SSE 120 evlrkavrerglilvsGgTgsGKttllyallkeinks 156
                 + ++  ++    + + G+TgsGKtt+l  l  + +  
  CCG91467.1 387 KNISFTINPGERVAIVGPTGSGKTTILSLLCRFYDPI 423
                 5555555556677889***********9988776665 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       3.8   3.5e+03     148     198 ..     217     261 ..     203     278 .. 0.67
   2 ?   12.8   0.0   9.8e-05     0.092      24      45 ..     397     418 ..     388     420 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.8
       DUF87 148 eelkkekeelrklknqaiarlldkledllrkggsfsnsstdlialllekle 198
                 e+    ++ ++++ +++ a+ +++++++ + +++   ++++ ia+ ++ ++
  CCG91467.1 217 EK----STRVQEQESNLLAETSERISSMRLIQAFS--KEEESIASFEKAAW 261
                 33....33677777777777777777777777777..55555555555544 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 9.8e-05
       DUF87  24 rHlAilgsTGsGKSntvavLle 45 
                 +++Ai+g TGsGK++  ++L++
  CCG91467.1 397 ERVAIVGPTGSGKTTILSLLCR 418
                 579****************986 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.7   2.6e+03      18      32 ..      59      73 ..      53      82 .. 0.82
   2 ?   11.5   0.0   0.00017      0.16      26      55 ..     389     418 ..     367     420 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.7
      AAA_25 18 pppprrwlvkgllpa 32
                +p p++wl++++l +
  CCG91467.1 59 RPWPVKWLIDDVLLK 73
                6789*******9854 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00017
      AAA_25  26 vkgllpagelallaGapgtGKttlaldlal 55 
                 +   +  ge ++++G++g+GKtt+++ l+ 
  CCG91467.1 389 ISFTINPGERVAIVGPTGSGKTTILSLLCR 418
                 4446889*****************998875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00014      0.13      25      49 ..     397     421 ..     387     561 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00014
      AAA_16  25 elvllsGesGvGKsslvrellrale 49 
                 e v ++G+ G+GK++++  l r + 
  CCG91467.1 397 ERVAIVGPTGSGKTTILSLLCRFYD 421
                 6799*************99986333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00021       0.2      20      57 ..     400     437 ..     392     448 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
  Zeta_toxin  20 llgGqpGAGKselaellkdelerqgnvvrldpDdlRel 57 
                  ++G +G+GK+++++ll +  ++ ++++++d+ dlR+l
  CCG91467.1 400 AIVGPTGSGKTTILSLLCRFYDPIEGAITIDGIDLRSL 437
                 6899******************************9987 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00055      0.52      11      55 ..     397     442 ..     388     561 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00055
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggv.kpeeillvaftgrAa 55 
                 + ++++++ G+GKT++l   ++ +  ++g    + i l ++t+++ 
  CCG91467.1 397 ERVAIVGPTGSGKTTILSLLCRFYDPIEGAiTIDGIDLRSLTKKSL 442
                 66899**************999998876541446666777776664 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.5         1   9.5e+02     216     252 ..     222     258 ..     207     274 .. 0.51
   2 ?    8.6   0.0   0.00031       0.3      14      41 ..     393     420 ..     390     422 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1
     DUF3584 216 vpeksrlkkqdveeWiediqalaaiekvrpeieklqe 252
                 v+e++    ++ +e i  +++++a+ k++++i+  ++
  CCG91467.1 222 VQEQESNLLAETSERISSMRLIQAFSKEEESIASFEK 258
                 2333333334444455555555555555555555544 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00031
     DUF3584  14 ldldghtnieGtNaaGKTtLlrLiPlFY 41 
                 +++ +++ i+G  ++GKTt+l+L+  FY
  CCG91467.1 393 INPGERVAIVGPTGSGKTTILSLLCRFY 420
                 677899******************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       841  (0.0469072); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 3903.16
//
Query:       CCG91468.1  [L=849]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-33  115.3   0.0    4.7e-33  114.4   0.0    1.5  1  Glycos_transf_2  Glycosyl transferase family 2
    1.3e-20   74.3   0.0    2.6e-20   73.3   0.0    1.4  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    7.4e-12   45.0   0.0    3.8e-11   42.7   0.0    1.9  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom
    4.6e-11   42.7   0.2    2.1e-10   40.5   0.0    1.9  2  Glyco_tranf_2_2  Glycosyltransferase like family 2
    4.2e-09   36.1   0.0    3.4e-08   33.1   0.0    2.0  1  Glyco_hydro_72   Glucanosyltransferase
    3.1e-08   33.3   0.0    5.6e-08   32.5   0.0    1.3  1  Glyco_transf_21  Glycosyl transferase family 21
    7.1e-07   29.3   2.4    7.1e-07   29.3   2.4    2.6  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    8.1e-06   26.3   0.2    0.00012   22.5   0.0    2.5  2  Glyco_tranf_2_4  Glycosyl transferase family 2
  ------ inclusion threshold ------
      0.018   15.0   0.0       0.11   12.5   0.0    2.0  2  DUF4434          Domain of unknown function (DUF4434)
      0.064   12.9   0.0        1.8    8.2   0.0    2.3  1  Glyco_tranf_2_5  Glycosyltransferase like family


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.0   2.6e-36   4.7e-33       1     169 [.     323     480 ..     323     481 .. 0.89

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 2.6e-36
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      svv+++yN ++tl  +l sl+a   ypd+eiivvDDgStD+t+eil+++    p v+ i++  n+G++ a+n+g+++a+g++++f D+D+  dp
       CCG91468.1 323 SVVVCSYNGANTLSDCLSSLRAL-QYPDYEIIVVDDGSTDHTQEILKKF----PEVIAIHQA-NKGLGVARNEGIKRASGEIVVFTDSDCMADP 410
                      8**********************.*************************....89*******.77***************************** PP

                      THHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHC CS
  Glycos_transf_2  95 dwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrealeel 169
                      dwl  lv+ l +    v++g++ +++  ++ i+          +  +     ++ ++ ++ g+++++ + ++e++
       CCG91468.1 411 DWLYFLVKTLLD-KQYVACGGPNYSPIPKGLIQAII----SLAPGSPSHVLLTDSSAEHIPGCNMAFWKWIFEKV 480
                      ************.66699999999998888888775....47777777777777777777777777777666665 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   1.5e-23   2.6e-20       1     223 [.     320     529 ..     320     531 .. 0.89

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 1.5e-23
  Glyco_tranf_2_3   1 prdlavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllv 94 
                      p  ++v+V+++n + +l ++l sl a +yp++e++vv+d+s+++t e ++     +p v +  +++a+  g ++++   ne+++++++++v++ 
       CCG91468.1 320 PK-VSVVVCSYNGANTLSDCLSSLRALQYPDYEIIVVDDGSTDHTQEILKK----FPEV-IA-IHQAN-KGLGVAR---NEGIKRASGEIVVFT 402
                      55.9*******************************************9986....9997.56.67877.5655554...6************** PP

  Glyco_tranf_2_3  95 DdDtvvePdtlkrllqffltpkvgavgtpvfllnrstlvsalgalefaerhlrflaarralgvltlnGsgslirrevlkelegldp.lflltdD 187
                      D+D+  +Pd l  l+ ++l++++ a g+p ++  ++ l++a   l ++   + +l+++ +   ++  G  +++   +++  + +dp     +dD
       CCG91468.1 403 DSDCMADPDWLYFLVKTLLDKQYVACGGPNYSPIPKGLIQAIISLAPGSPSH-VLLTDSSAEHIP--GCNMAFWKWIFEKVGYFDPiFRKAGDD 493
                      ****************************************887777665555.444555555666..9******************777777** PP

  Glyco_tranf_2_3 188 yelglrlrragfrtayvpgaavrevfpsslkayikq 223
                      ++ + r+  +g+++ + p a+v+++++ ++k+y kq
       CCG91468.1 494 VDFCWRILFNGYQIGFNPSAIVWHYRRFTIKEYLKQ 529
                      **********************************99 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   2.1e-14   3.8e-11       2     219 ..      23     239 ..      22     259 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 2.1e-14
                      EEETTEEEETTEEE-EEEEEE-S-BTTTBT..S--.HHHHHHHHHHHHHCT--EEEETTS--SHHHHHHHHHHT-EEEEE-S-B-TTSCCCCSH CS
  Glyco_hydro_2_C   2 evkdkllliNgkrllfkGvnrHedadrrGr..aid.eellvkDlkllkqlniNavRtsHYPnqeevyelcDeyGlyvidEanlethglaqklge 92 
                      +++ k ++  gk+++++Gvn   + +r      ++  e++++D+ l+++ +iN++Rt H+P +  +++l+ eyGl ++     +++  ++    
       CCG91468.1  23 KIHSKFFYNKGKKFYLQGVNYGPFRPRDSTnsYFPlAEEVRNDFLLMQKAGINTIRTYHFPPS-WLLDLAEEYGLKIL-----VSIPWTERYL- 109
                      6788889999**********999988765411565257899********************75.579********986.....5665555333. PP

                      CT-CCCCTTTSGGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESS...........CHHHHHHHHHHHHHHH-TTSEEEEETCSSGGGTSSEEEE CS
  Glyco_hydro_2_C  93 iepsynvladnpewlkavldrieelverdkNHpsviiWSlgNEs...........gagedikalaelikklDptRlvhyegvaaareldviild 175
                               ++ ++ +a+ + i + v+  + H +++ + + NE               + i++l  lik+ D   lv y +   +++++   +d
       CCG91468.1 110 -------YFSDSKSFNAFKQWILQKVKEYVGHQALLGYFVDNELppdcirfygrkKIEKLISDLLLLIKNTDGEALVSYANFPPTEYFQPYPVD 196
                      .......234556667777777777888889************889****85554455556677789***************99********** PP

                      CCTT.TSSSTTCHHHHHHHHHHCHH.HHSS-EEEEEESE-BST--T CS
  Glyco_hydro_2_C 176 iysr.myekvglleelekelenekk.klqkPlilcEYghamgnslG 219
                       ys+ +y +   +++le++l + ++   +kPlil+E+g + +   G
       CCG91468.1 197 FYSFnVYLH--NPKDLEAYLYKLQNlAGEKPLILSEFGMDSLR-HG 239
                      998525655..899999999887663679*********99876.45 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   1.2e-13   2.1e-10       1     104 [.     323     418 ..     323     425 .. 0.85
   2 ?   -0.7   0.0      0.45     8e+02     172     221 ..     474     522 ..     466     544 .. 0.78

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 1.2e-13
  Glyco_tranf_2_2   1 svviplraseerhyieervlqkakyydeeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfi 94 
                      svv++ +++ ++  + + +   +    ++ e+ivvddgS++++ e ++++ +        ++     +l+ arN G+++a +++v+F D+Dc+ 
       CCG91468.1 323 SVVVCSYNGANT--LSDCLSSLRALQYPDYEIIVVDDGSTDHTQEILKKFPEVIAIHQ-ANK-----GLGVARNEGIKRASGEIVVFTDSDCMA 408
                      89**********..*****5444444599****************9999988754433.556.....9************************** PP

  Glyco_tranf_2_2  95 ssDkfekilk 104
                       +D +  ++k
       CCG91468.1 409 DPDWLYFLVK 418
                      ***8866655 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.45
  Glyco_tranf_2_2 172 rraflevGGyDErfrGhgaEDfdlllRlakaikslekmpvellykaraks 221
                      +  f +vG +D  f  ++ +D d+  R++    ++   p  + ++ r   
       CCG91468.1 474 KWIFEKVGYFDPIF-RKAGDDVDFCWRILFNGYQIGFNPSAIVWHYRRFT 522
                      567899********.57889********9888777777777776655555 PP

>> Glyco_hydro_72  Glucanosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.9e-11   3.4e-08      10     276 ..      20     259 ..      11     280 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.9e-11
                     --EEEETTEEEETTT-BBE-EEEEE--BE------SSB-GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT CS
  Glyco_hydro_72  10 eaieikgnkffdsksgeqfyikGvdyqpggseevsslvdpladaeaCkrdikllkelgvntvrvyavdnskdhdeCmkalsdagiyvildlnepk 104
                     + i+i  + f+  ++g++fy++Gv+y p +  ++++   pla+    ++d  l+++ g+nt+r y   +s      +++ ++ g+ +++ +  ++
      CCG91468.1  20 QRIKIHSKFFY--NKGKKFYLQGVNYGPFRPRDSTNSYFPLAE--EVRNDFLLMQKAGINTIRTYHFPPSW----LLDLAEEYGLKILVSIPWTE 106
                     56777766666..889***************99999999**98..789*******************9986....57788999********9999 PP

                     BS--TTS-..---HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EEEEE---TTTHHHHHHHTT CS
  Glyco_hydro_72 105 esinradpassynedllervfkvidafkeyknvlgffaGnevvndksntaasayvkavvrdvkeyikkkkerkiPvGysaaddaelrvelaeyla 199
                     + +  +d+ +s+n+ + + + + + ++  ++ +lg+f  ne+  d         +  ++ d+   ik+ +  +  v y+           +ey++
      CCG91468.1 107 RYLYFSDS-KSFNA-FKQWILQKVKEYVGHQALLGYFVDNELPPDCIRFYGRKKIEKLISDLLLLIKNTDG-EALVSYAN-------FPPTEYFQ 191
                     99998888.77875.456677778888999************99999999999999999999999987665.45577764.......44568888 PP

                     BTT-..--S-EEEEE----SS--HHHHSHHHHHHHHTT-SS-EEEEEE---SSSS---THHHHHTSHHHHTTEEEEE CS
  Glyco_hydro_72 200 CgdeddkadffglnmyeWCgkssfktsGydertkefenysiPlflseyGCnkvtprkftevealyseemtsvfsGGl 276
                            +df+++n y     +++    y  + +++++   Pl+lse+G ++ ++ + ++   l++e++  vf  Gl
      CCG91468.1 192 PYP----VDFYSFNVYLHN-PKDL--EAYLYKLQNLAG-EKPLILSEFGMDSLRHGQ-DNQAWLLGEHIRIVFQSGL 259
                     766....599999999754.3344..456667777765.579999999988776433.4445567777777776554 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   3.1e-11   5.6e-08      24     169 ..     389     531 ..     385     533 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.1e-11
  Glyco_transf_21  24 qaleaakydllvisDsdvrvkpdyLeellaaledpkvglVtslpvgsdakglaaaleaafl.ntlagvlqaklsglgfavGksmalrreaLeai 116
                       ++++a  +++v+ Dsd +++pd L  l+++l d++     ++ +   +kgl +a+ ++   ++ + +l+   s ++ + G  ma+ + ++e++
       CCG91468.1 389 EGIKRASGEIVVFTDSDCMADPDWLYFLVKTLLDKQYVACGGPNYSPIPKGLIQAIISLAPgSPSHVLLTD--SSAEHIPGCNMAFWKWIFEKV 480
                      57889999*************************95554444566777789******999984566666666..8889***************** PP

  Glyco_transf_21 117 GGfealadeLAeDyalgkllraaGlkvvlspapiaqtsvprrsslrallaRql 169
                      G f ++ ++  +D  + +++  +G+++ + p +i+++  + r +++++l++q+
       CCG91468.1 481 GYFDPIFRKAGDDVDFCWRILFNGYQIGFNPSAIVWHY-R-RFTIKEYLKQQI 531
                      ***********************************965.4.468899988885 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   2.4     4e-10   7.1e-07      72     152 ..     465     583 ..     398     642 .. 0.57
   2 ?   -2.5   0.8       2.2   3.9e+03     160     190 ..     785     817 ..     754     823 .. 0.54

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 4e-10
  Glyco_trans_2_3  72 svGsgaflrrsalqevggwdgdessvsEDfdmglrlqrkGyrvrfvpeslvkekspltlraalrQrkRwayGceleklil.............. 151
                      ++G ++++    +++vg++d  ++  ++D d++ r++ +Gy++ f p+++v+ + ++t++ +l+Q   +       +++l              
       CCG91468.1 465 IPGCNMAFWKWIFEKVGYFDPIFRKAGDDVDFCWRILFNGYQIGFNPSAIVWHYRRFTIKEYLKQQIGYGEA----EALLrfkhphyfgalgsa 554
                      6788888888889***************************************************98766666....222212222223333333 PP

  Glyco_trans_2_3 152 ............................l 152
                                                   
       CCG91468.1 555 iwkgqiyeqnfnlfslrkssiyqgvfgtG 583
                      33444444444444444444444444441 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
  Glyco_trans_2_3 160 gsllwsalplhlallllfslla......lalvlllll 190
                      ++l+++ ++l      +f ++       la+++ll+l
       CCG91468.1 785 HKLIFFVMLLTT----CFLWVGvgqislLATLPLLAL 817
                      333333333333....333333333221333333333 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   6.9e-08   0.00012       2      50 ..     330     380 ..     329     416 .. 0.74
   2 ?    0.8   0.1      0.39   7.1e+02      66      87 ..     738     758 ..     714     764 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 6.9e-08
  Glyco_tranf_2_4   2 neadiLpeflahhlalgf.d.rilvydndstDgtrailkelpevkllhvdk 50 
                      n a++L  +l  ++al + d +i+v+d++stD t +ilk+ pev  +h  +
       CCG91468.1 330 NGANTLSDCLSSLRALQYpDyEIIVVDDGSTDHTQEILKKFPEVIAIHQAN 380
                      789999***********96436*********************98766543 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.39
  Glyco_tranf_2_4  66 laryaeadwvlvvDaDEflvvp 87 
                      l + +++ w +++ aD+f  +p
       CCG91468.1 738 L-DSGWDSWDIFLYADNFWDCP 758
                      3.347999**********8765 PP

>> DUF4434  Domain of unknown function (DUF4434)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.1e-05      0.11      70     131 ..      87     146 ..      81     173 .. 0.83
   2 ?   -0.7   0.0       0.7   1.3e+03     137     164 ..     205     232 ..     185     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.1e-05
                 HHHHHHHTT-EEEEE--B-SHHHH.HS-GGGGHHHHHHHHHHHHHHTTT-TTEEEEEE---- CS
     DUF4434  70 iLdaAdklgmkvflglnydeewwdveedlsweielakrvaeelakkYghhkafyGWYiseEi 131
                 +Ld+A+++g+k++++++  e+++ ++ + s +    k+ + + +k+Y  h+a+ G+++ +E+
  CCG91468.1  87 LLDLAEEYGLKILVSIPWTERYLYFSDSKSFN--AFKQWILQKVKEYVGHQALLGYFVDNEL 146
                 69*********************966554444..4455555559**************9997 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.7
                 THHHHHHHHHHHHHHHTTS--EEE---- CS
     DUF4434 137 eavealkelkkhlkelserlpilispfm 164
                 +++++l++ + +l++l+ ++p ++s f 
  CCG91468.1 205 HNPKDLEAYLYKLQNLAGEKPLILSEFG 232
                 558889999999999**********995 PP

>> Glyco_tranf_2_5  Glycosyltransferase like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00098       1.8      31      79 ..     372     420 ..     323     427 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00098
  Glyco_tranf_2_5  31 eiiairna.ksiaeaynkalsasdakykvYlhqDvliinkdfikdlleiF 79 
                      e+iai++a k +  a n+++++++ +++v+ + D +   +d++  l++ +
       CCG91468.1 372 EVIAIHQAnKGLGVARNEGIKRASGEIVVFTDSDCM-ADPDWLYFLVKTL 420
                      78889888999*********************9965.6777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 6045.81
//
Query:       CCG91469.1  [L=298]
Description: Phosphoribosylaminoimidazole-succinocarboxamide synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.6e-76  255.0   0.0      9e-76  254.8   0.0    1.0  1  SAICAR_synt  SAICAR synthetase


Domain annotation for each model (and alignments):
>> SAICAR_synt  SAICAR synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.8   0.0     5e-80     9e-76       2     251 ..      15     262 ..      14     263 .. 0.94

  Alignments for each domain:
  == domain 1  score: 254.8 bits;  conditional E-value: 5e-80
                  EEE-SSEEEEE-SSTTEEEEEEESEEEECCCTEEEEETTHHHHHHHHHHHHHHHHHH.--BSEEEE...........-SSSEEEEE-EEEESEEEEEE CS
  SAICAR_synt   2 lyeGKvrdvYeledddklllvakDrisAfdvvlkeeipgKGkvltqlsafwfeklek.ipnhliksld..pe....qlegrsmlvkklkmlpvEvvvR 92 
                  + +GKvrd+Y    +++l++v++Dr+sAfd +l+e ip KG + +q++  wfe+++   pn l+ s++  pe    + +gr m +  ++++p+E+++R
   CCG91469.1  15 IRSGKVRDLYCW--KEELWMVTTDRVSAFDCILPEVIPTKGIIINQIALGWFEQTSLlFPNALL-SEElpPEvnlpEWNGRLMRMLPCDPFPMEFIAR 109
                  789********8..568***************************************66******.5455644788899******************** PP

                  EE--HHH.......HH....HH..T--TT-EEEEEEEEEEE--CCCT.S-EE-HHHHH.HTT-HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE CS
  SAICAR_synt  93 gyltGslwkeykksgkvcgirlpeglkegeklpepiftpstKaeegehDeniseeevvealgteeeaeeieelalavyekaaelaaergiilvDtKlE 190
                  gyl Gs+wkey ++g+v g+rlp+ l+ g+ lpep+f p+tKa+eg hDe ++ e + ++lg  ++++ +++++l++y   +++a ++g+ilvDtK+E
   CCG91469.1 110 GYLVGSGWKEYLEKGTVGGYRLPPHLTFGSPLPEPLFSPTTKAKEG-HDEALDIESAKKILG--DNYDVLKNITLDLYLFGKKYAYQKGLILVDTKFE 204
                  *********************************************9.7************99..79******************************** PP

                  EEEETTTTEEEEES--.STTTEEEEETTT......GGGB-STHHHHTT-STHHHHHHHHHHH CS
  SAICAR_synt 191 FGldeedgelvLaDevltpDssRfwdaetye.egkeqeslDKqfvRdwleeveekwkekler 251
                  FG++  d++l+L+De+ltpDssRfw  e+ye +  +++++DKq++R +le+  +kw+++ ++
   CCG91469.1 205 FGRR--DEKLYLIDEMLTPDSSRFWLVEDYEkHKGNSTHYDKQIIRIYLEQ--SKWNKQPPP 262
                  ***9..79***********************44557899***********9..****99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2214.46
//
Query:       CCG91470.1  [L=360]
Description: HD-superfamily hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-08   32.8   0.1    4.5e-07   30.1   0.0    2.4  2  HD               HD domain
  ------ inclusion threshold ------
      0.024   13.6   0.1       0.04   12.8   0.1    1.4  1  TraI_2           Putative helicase
      0.056   13.4   0.0       0.11   12.5   0.0    1.4  1  tRNA_anti-codon  OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.64   3.8e+03      70      91 ..     146     167 ..     140     170 .. 0.70
   2 !   30.1   0.0   7.6e-11   4.5e-07       3     121 ..     173     303 ..     171     304 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.64
                 HHHHHHHHHHHHHHHHHTTCCH CS
          HD  70 vekrlgldledvaklirehhes 91 
                 ++++ g+ l+ +a++ ++hh+ 
  CCG91470.1 146 FLIDYGERLKRAAAAREYHHNF 167
                 4555555567899999999985 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 7.6e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHH....HHH.CTCCHHHHHHHHHHHHHHHHHHHHH..............HHHHH CS
          HD   3 eHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekk....eee.fekflaHekvgaeilrevekrlgld..............ledva 82 
                  H  ++ + a+ l   +    + +l++++ L+HD+Gk  ++d++e+         + ++ +H+ +g+ei+  +  +l+                   ++
  CCG91470.1 173 RHVCQMIQAAEGLMAAYP-GYNWDLIKAGILFHDCGKLWENDFQEQGfvmkR-SkTAELIGHIPIGVEIVNSLWRSLQHReefhralippsdlvRVHLL 269
                 577777777776655555.58899*********************9998642.26889999******99988766664447778999999999866688 PP

                 HHHHTTCCHHHHHHHHHHHHCCTSCHHHHHHHHHHHHHH CS
          HD  83 klirehheswegkkrprglaerqlslearivklaDrlaa 121
                 +li +hh+  e      g+++ + ++ea i+ ++D+l+a
  CCG91470.1 270 HLIVAHHGLRE-----YGSPVTPRTPEAWILHILDNLDA 303
                 88888888887.....389******************98 PP

>> TraI_2  Putative helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   6.8e-06      0.04      26      78 ..     130     182 ..     101     189 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.8e-06
      TraI_2  26 qklslsredferlylaaieryAelvqllPAseshhhskaGGLLdhglevaaaa 78 
                 +  s+++  + rl  + +  y e  ++  A+++ hh   GGLL+h   ++ aa
  CCG91470.1 130 KIDSIADPRLCRLCSQFLIDYGERLKRAAAAREYHHNFRGGLLRHVCQMIQAA 182
                 34477888888999999999**************************9999876 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.8e-05      0.11      10      74 ..      35     101 ..      18     103 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.8e-05
                      EE..EEEETTEEEEEEEETTEEEEEEEET.HHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEEE CS
  tRNA_anti-codon  10 is..drsggkvifidlrDgtgriqvvlfr.eeatklaenlkeGdvvrvtGrvkrrpggelelkveeie 74 
                      ++  +r+g+ +++i++ D +g+ ++ ++  ++a++ + +l+++ +v+ + + + +  g l+ +v  ++
       CCG91470.1  35 KEstTRNGSFFLDIEIADHSGNKKIKIWQeSKAYASFLTLPKNAFVEFSATFRNSSYG-LQAIVHTLR 101
                      3377899999*******************66666666778899999999999999888.887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2600.28
//
Query:       CCG91471.1  [L=53]
Description: hypothetical protein MFUM_1050017 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      127  (0.0070835); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 409.88
//
Query:       CCG91472.1  [L=514]
Description: Outer membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-31  107.4  21.5    1.2e-18   67.6   3.0    2.2  2  OEP       Outer membrane efflux protein


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5  10.6   4.1e-16   7.3e-12       3     188 .]      88     280 ..      87     280 .. 0.94
   2 !   67.6   3.0   6.7e-23   1.2e-18       2     184 ..     301     475 ..     300     479 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 4.1e-16
         OEP   3 ellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgtt..........svgltlsqplfdggkrrarvkaakaq 91 
                 ++ +la+++  +lk+  +   a++a + +  a+f+P++s+  + +++++ +  ++ +g                 +l+ ++++f++ ++ +r++aa+a 
  CCG91472.1  88 QCFQLAAARWNQLKIDYQGMIAQQAVVSQTLAQFYPQVSFLNEQSFQNSVGFAPTLGGI---AfgvapstyfsLNSLSGTWTIFNSFQNVNRLNAARAT 183
                 577899999899**************************************998877664...14458888888888888******************** PP

         OEP  92 leaaeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                    + +  e+  q l +++a+a+++ l  + ++++++++++ ++ +++  e r k G++   dv q+q +l+ + a++++++  +++ +a L y+lg
  CCG91472.1 184 AAYSAYHMERDYQLLYANLASAFYSALMYEGSIAILNDQIDILQALVNELEYRQKIGRSRPADVFQTQTNLAATVAQRENYKGFYNQFLALLTYYLG 280
                 ********************************************************************************************99998 PP

  == domain 2  score: 67.6 bits;  conditional E-value: 6.7e-23
         OEP   2 dellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqle 100
                 +e la++ + +pd++a+ + ++a++a l++a++   Pt+s++g y    + +  ++ +       v++  s+p+f+gg + + +++++a +++ ++qle
  CCG91472.1 301 EEYLAQVGS-RPDVLAQVQLLRAQKAGLAVARGMLGPTISVNGFYLLTHDPPVPNVWN-------VNVITSMPIFNGGLYTSTIRQQEALVHQVQLQLE 391
                 555666554.9**********************************9988887766543.......99999***************************** PP

         OEP 101 qarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLe 184
                 + ++q  ++v+ +++ + +a  q+ +++e  +     +++ ++ ++ G + lldvl a + ++ ar++l +ae   ++++ +L 
  CCG91472.1 392 DLKRQADENVRISFALFNAAISQVVQLREETEVGALYYAAQRDDFQRGVAALLDVLVALNTYQTARLNLFQAEMGARMQLVNLF 475
                 *************************************************************************99999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 3087.36
//
Query:       CCG91473.1  [L=194]
Description: RNA polymerase sigma factor [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-17   60.5   0.0    1.8e-16   59.6   0.0    1.5  1  Sigma70_r4_2  Sigma-70, region 4
    2.9e-16   59.0   1.4    4.7e-16   58.3   1.4    1.3  1  Sigma70_r2    Sigma-70 region 2
    3.7e-10   39.2   0.1    6.5e-10   38.4   0.1    1.4  1  Sigma70_r4    Sigma-70, region 4
    3.7e-06   27.0   0.2    7.6e-06   25.9   0.2    1.6  1  Sigma70_ECF   ECF sigma factor
     0.0038   17.0   2.6     0.0044   16.8   0.0    2.5  4  HTH_23        Homeodomain-like domain
     0.0046   17.5   0.0     0.0089   16.6   0.0    1.5  1  DUF134        Protein of unknown function  DUF134
  ------ inclusion threshold ------
       0.13   11.8   0.0       0.27   10.8   0.0    1.5  1  HTH_24        Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   6.9e-20   1.8e-16       2      54 .]     125     177 ..     124     177 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 6.9e-20
                   HHHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   2 qalrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +++++ ++ Lp+rqr +++l+ +e+lsy+EIA++lg+s  + ks l+RAr+ L
    CCG91473.1 125 EWIEKIIDGLPPRQRLAVILKSYEDLSYDEIARILGVSIPATKSLLFRARETL 177
                   68999*********************************************986 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   1.4   1.8e-19   4.7e-16       1      68 [.      23      88 ..      23      90 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 1.8e-19
                HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTS CS
  Sigma70_r2  1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkr 68
                lv+r+++ +++ a ++l++   ae+++Q +fl ++ra+ r++  r+ ++++wl++i r+++++++Rk+
  CCG91473.1 23 LVQRHYQAIYGAALKMLKDKFLAEEITQKVFLQAYRAAGRYE-PRA-KLRTWLYTILRRLVLNQFRKK 88
                79****************************************.777.8******************97 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.1   2.6e-13   6.5e-10       2      49 ..     131     178 ..     130     179 .. 0.97

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 2.6e-13
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 ++ Lp+r+r  + l  +e+l++ EI+++lg+S  + +++++rA++ LR
  CCG91473.1 131 IDGLPPRQRLAVILKSYEDLSYDEIARILGVSIPATKSLLFRARETLR 178
                 799********************************************9 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.2     3e-09   7.6e-06       5     182 ..       6     180 ..       3     183 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3e-09
  Sigma70_ECF   5 telleqvkdGdaeaaeqllelvydeLrrlagsklknerreetledtaLvfeaflrlvdkekfpdlsgrdhlfalaaeamrrilidhaRrrkrqkRGGd 102
                  +el+    +Gd+ a   l ++ y+ +   a + lk +   e+   t  vf   +r+++      ++ r +l + + ++ rr + ++ R+++ q     
   CCG91473.1   6 SELMAMTAKGDDGAYGLLVQRHYQAIYGAALKMLKDKFLAEEI--TQKVFLQAYRAAG-----RYEPRAKLRTWLYTILRRLVLNQFRKKEIQSSPLV 96 
                  678889999***************9999888888665544333..3335555556666.....4677888888888999*************998888 PP

  Sigma70_ECF 103 vvraeldeeedsvds..dspdelleLd..ealerlls.ldpeqarlvelrkleGlsveEiAeklgvskrtverrlalaRawlere 182
                  ++ +e d++ ++ +s   + d+l++ +  e +e++ + l+p+q+  v l+  e ls +EiA  lgvs  +++  l  aR+ l+ +
   CCG91473.1  97 TENGE-DKDIATYQSamSPLDQLVKQEqmEWIEKIIDgLPPRQRLAVILKSYEDLSYDEIARILGVSIPATKSLLFRARETLRVA 180
                  88888.88887755555667777766533679****99******************************99999998899877765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.8   7.2e+03      10      23 ..      35      48 ..      33      51 .. 0.76
   2 ?   -2.9   0.2       2.6   6.7e+03      32      41 ..      71      80 ..      70      89 .. 0.71
   3 !   16.8   0.0   1.7e-06    0.0044       5      30 ..     137     162 ..     134     167 .. 0.92
   4 ?   -3.1   0.0       2.9   7.4e+03      29      42 ..     172     185 ..     168     188 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.8
      HTH_23 10 illllaeGlsvreI 23
                +l++l+++   +eI
  CCG91473.1 35 ALKMLKDKFLAEEI 48
                78999988877777 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.6
      HTH_23 32 rTvyrwlkry 41
                 ++y +l+r 
  CCG91473.1 71 TWLYTILRRL 80
                5677888774 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 1.7e-06
      HTH_23   5 reRlrillllaeGlsvreIAreLgvs 30 
                 r+Rl ++l   e ls+ eIAr+Lgvs
  CCG91473.1 137 RQRLAVILKSYEDLSYDEIARILGVS 162
                 79***********************9 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 2.9
      HTH_23  29 vsrrTvyrwlkryr 42 
                 + r T++   ++++
  CCG91473.1 172 RARETLRVAFQKWE 185
                 56778887778874 PP

>> DUF134  Protein of unknown function  DUF134
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.5e-06    0.0089      42      79 ..     141     178 ..     111     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.5e-06
      DUF134  42 airlvdyedlkqeeaaklmGiskatlwrlltearkkia 79 
                 a+ l+ yedl+++e a+++G+s ++  +ll  ar+ + 
  CCG91473.1 141 AVILKSYEDLSYDEIARILGVSIPATKSLLFRARETLR 178
                 7889******************************9775 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0001      0.27      15      37 ..     147     169 ..     140     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
      HTH_24  15 nprisqreLAerlglSpstvnrr 37 
                   ++s+ e+A+ lg+S+++++  
  CCG91473.1 147 YEDLSYDEIARILGVSIPATKSL 169
                 5679**************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1213.41
//
Query:       CCG91474.1  [L=168]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1387.20
//
Query:       CCG91475.1  [L=1063]
Description: Cation/multidrug efflux pump [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-273  909.7  12.0   2.5e-273  909.4  12.0    1.0  1  ACR_tran  AcrB/AcrD/AcrF family
    1.2e-07   31.0  21.5    0.00067   18.7   6.9    2.4  2  MMPL      MMPL family
  ------ inclusion threshold ------
       0.13   12.3   2.9        3.7    7.6   0.0    3.2  3  DUF5316   Family of unknown function (DUF5316)
       0.15   12.3   0.5       0.38   11.0   0.5    1.7  1  CnrY      Anti-sigma factor CnrY


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  909.4  12.0  5.5e-277  2.5e-273       2    1020 ..       4    1033 ..       3    1034 .. 0.96

  Alignments for each domain:
  == domain 1  score: 909.4 bits;  conditional E-value: 5.5e-277
                  HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS- CS
    ACR_tran    2 ikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtd 98  
                  ++++i+rp+fa++l++ ++++Gi+++++l +++lPei++p ++++++  Gaspe++e+e ++p+Eqa+   +glk +sS  + g++si+l+Fe g++
  CCG91475.1    4 SDLSIRRPVFAWMLMIGLIFFGIVALFRLGISQLPEIDFPIITINLQWNGASPEILETELVDPIEQAVISAQGLKGISSYIQLGQASIILEFELGRN 100 
                  689********************************************************************************************** PP

                  HHHHHHHHHHHHHHH...........GGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEE CS
    ACR_tran   99 idiArqqvqnrlqea...........knkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekav 184 
                  id A  +vq +++++           +++ P  v +p + k+++++++il ++v  +  + t  +l ++++ +++d+L+ v+GVg++ l G + +++
  CCG91475.1  101 IDSALTEVQSKISSVklpmdptqqvgMQQVPTPVPQPILVKDNPEEQPILLVGVFGE--HKTLHDLVTFVDLVLHDELQIVPGVGQIVLAGYNVRNL 195 
                  ************998444444433345899999999*********************..99999********************************* PP

                  EEEE-HHHHHCTT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEE.....ETTSCEEEHHHCEEEEEEESSSSSEEEETT CS
    ACR_tran  185 riwldpqklaklgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivk.....nqdgskvrlrDvAkVelgaeeerlaatfng 276 
                  riw+d +kla+++lt++d+ +a+ ++ v+vaaG le+ ++++++ra g+  s+e++++i++k         s++r++DvAkVe+g ++ r +a  ng
  CCG91475.1  196 RIWADSKKLAQYQLTVQDLQTAIMQEHVEVAAGDLENPHKQFNVRAMGEGLSPEEVGNIQIKkrgseLIYRSNIRIKDVAKVEDGLDDIRRIAASNG 292 
                  *************************************************************966433334589************************ PP

                  EEEEEEEEEEETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  277 kpavllevkklpganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtf 373 
                  +  +++++kk+pgan++eva+ vk+kl e++++lP+g++++vvydrt+ ++ si+e+ +tL +++v+  lv +lFL++++atl +++++P s+lgtf
  CCG91475.1  293 QTIIGVGIKKQPGANSVEVARLVKKKLSEIQPFLPKGIHLSVVYDRTKHIEDSIKETLFTLGLSAVITSLVCYLFLGSWTATLNVLLSIPTSVLGTF 389 
                  ************************************************************************************************* PP

                  HHHHHTT--BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHH CS
    ACR_tran  374 avlkalgfslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivla 470 
                  +v+++lgf+lN +tL gL lAiG++vDdAi v+Eni+r+  + +++++ aa+ +++ei++a +a ++ ++a+flP++f++Gv+Gk f qf+lti+ a
  CCG91475.1  390 IVIYFLGFTLNFFTLLGLSLAIGIIVDDAIMVLENIYRHRDM-KKTRVMAARDGAREITFAAMAATVAIIAIFLPVAFMKGVIGKYFYQFGLTISAA 485 
                  ******************************************.9999************************************************** PP

                  HHHHHHHHHCCHHHHHHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE- CS
    ACR_tran  471 illsvlvaltltPalcallLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvql 567 
                  ++ls+l a+tltP+ c+ ++  + ++k  ++    +  f+ l + Y+ ll++++  +++v+l al +++ s+ lf+++p+e++P +de ++++ +q+
  CCG91475.1  486 VALSLLEAITLTPMRCSQIMDDSYQRK--GLAYIVDYSFKSLAKVYKYLLKFCIFYPWLVILGALSVFLYSLKLFSFLPQELIPTQDESSFIIRIQT 580 
                  ***********************9988..588889999*********************************************************** PP

                  STTB-HHHHHHHHHHHHHHHHTTTTEEEEEEEECECS........SE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEE CS
    ACR_tran  568 ppgvsleqtqkvlkqvekilkekpevesvfavtGfae........sgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvella 656 
                  p g+s+ +t+++lk+ ek +  ++eve+vf  +G  +        + + +++n + ++++Lk++ker     s+  l++ lr+el+k+++ +     
  CCG91475.1  581 PVGSSIYYTEEKLKECEKLILSHQEVEKVFGEVGGMIqrtgatdgNLVDSEVNVGTIYVTLKDKKER---VLSQRILMDTLREELNKLKDLR---AT 671 
                  ******************************7666543221100023345789***************...89999****************9...78 PP

                  TTSSCCCSSSSCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEE CS
    ACR_tran  657 piqlreletlsgvrselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfie 753 
                  p++l++ + ++g+ + ++ ++ g+d+++L++++++ ++++k++    d+ ++  ++ p++ v +dr +a++  + i++i +t+++a+gg   ++f +
  CCG91475.1  672 PQDLSIRGFTTGRGFPIELTIRGEDYKVLEKIVQEDIEEMKKSGYFVDLDTDFRDGMPEVRVYPDRFAANACSIPIQNIANTVAIAIGGIAQGQFTN 768 
                  999999999**************************************************************************************** PP

                  TTEEEEEEEEE-GGGSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEE CS
    ACR_tran  754 egrrvkvvvrleedlrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiew 850 
                  ++rr+++ +rl+ d r++ped+++l +r+++++++p+++vak++  +  + ++r+ + r+++i +nva g+s+ +a  + +ki +k +lp+g+++  
  CCG91475.1  769 GERRYDIRIRLRGDERVGPEDIARLGIRTNTNEFMPITSVAKLQTVQTYQTLTRKMRERAITIFANVASGKSQAQALVVAKKICSK-NLPKGYRLFL 864 
                  **************************************************************************************.********** PP

                  EHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ACR_tran  851 tgqaeqeqeasnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelreke 947 
                  +g a++++e+ +sl++ + + +++ ++vLa +++s+++p+++ll +P++l Gallal+++++++++++++Gl+ll+G+a+kN illvef ++lr  +
  CCG91475.1  865 SGGAASFEETFQSLVFAIWVGVVIAYMVLASQFNSFVHPFSVLLALPFSLSGALLALWFTHQSINLYSMIGLVLLMGIAKKNSILLVEFTNQLRY-K 960 
                  ***********************************************************************************************.9 PP

                  TTCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  948 gksleeaileaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlv 1020
                  g+s++eaileaa  RLrPiLMT++a+i  ++P al+ g G+e++ p++i++lgG+ +stv+tL++vP+ Y+l+
  CCG91475.1  961 GLSIKEAILEAAPIRLRPILMTSMATIAAAIPPALALGPGAESRIPMAITLLGGIAVSTVFTLFVVPAAYLLL 1033
                  **********************************************************************997 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   6.9   1.5e-07   0.00067     131     296 ..     336     498 ..     266     502 .. 0.79
   2 !   17.7   6.6   3.1e-07    0.0014      97     306 ..     834    1037 ..     822    1049 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.5e-07
        MMPL 131 aatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyree 229
                    ++ ++d+ ++ l ++++ +++   ++  + ++S  a l +ll++ +s+l ++    i+ ++lg++l+ f+l l   l+i++ +D a++++  +   
  CCG91475.1 336 YDRTKHIEDSIKETLFTLGLSAVI-TSLVCYLFLGSWTATLNVLLSIPTSVLGTF----IVIYFLGFTLNFFTL-LGLSLAIGIIVDDAIMVLENIYRH 428
                 445566666666666666655554.455566789***************998776....557788999987776.89999************9999999 PP

        MMPL 230 laagedreeaviravastgkvvtaaGltvaiamlgLvvar...lpvlaqvGvaialGvlvdvlivlTllP 296
                 ++  ++r  a+ +  + +  + +aa++ +++ +l  ++++    +++ q+G++i+ +v++++l ++Tl+P
  CCG91475.1 429 RDMKKTRVMAARDGAREITFAAMAATVAIIAIFLPVAFMKgviGKYFYQFGLTISAAVALSLLEAITLTP 498
                 9999999899999999888888888888877787777766222579***********************9 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 3.1e-07
        MMPL   97 dpgsteadesvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilal 193 
                  + +s ++++++  +++ + +   ++g +  ++G aa +++    + ++l +++ v++v++ ++L+  + S+v ++ +ll   +sl  al    ++  
  CCG91475.1  834 NVASGKSQAQALVVAKKICSKNLPKGYRLFLSGGAASFEE----TFQSLVFAIWVGVVIAYMVLASQFNSFVHPFSVLLALPFSLSGALLA--LWFT 924 
                  555555555555566655555569****************....67799*****************************9999998766655..8989 PP

        MMPL  194 llglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeavirava.stgkvvtaaGltvaiamlgLvvar..lpvlaqvGvaialGvlvd 287 
                  ++ ++l+++   +  vll++++    +lLv    + + +g + +ea+ +a   +  +  + + +t+a+a+   +++    ++   +++++  G++v+
  CCG91475.1  925 HQSINLYSM---IGLVLLMGIAKKNSILLVEFTNQLRYKGLSIKEAILEAAPiRLRPILMTSMATIAAAIPPALALGpgAESRIPMAITLLGGIAVS 1018
                  988888765...5689999****************************998761556666778899999997644444014555569*********** PP

        MMPL  288 vlivlTllPAllvllGraa 306 
                  +  +l ++PA   ll+r+ 
  CCG91475.1 1019 TVFTLFVVPAAYLLLSRFE 1037
                  *****************94 PP

>> DUF5316  Family of unknown function (DUF5316)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.014        61      50      73 ..     345     368 ..     337     369 .. 0.89
   2 ?   -4.9   0.9         4   1.8e+04      56      72 ..     377     394 ..     373     395 .. 0.70
   3 ?    7.6   0.0   0.00083       3.7      10      32 ..     749     771 ..     743     779 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.014
     DUF5316  50 klsknllliglPNllaalllylfi 73 
                 ++  +l+ +gl  ++++l+ ylf+
  CCG91475.1 345 SIKETLFTLGLSAVITSLVCYLFL 368
                 567899****************97 PP

  == domain 2  score: -4.9 bits;  conditional E-value: 4
     DUF5316  56 lliglP.Nllaalllylf 72 
                 +l+++P ++l+++++++f
  CCG91475.1 377 VLLSIPtSVLGTFIVIYF 394
                 667777567888888877 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00083
     DUF5316  10 GfvglvfiliagllsGafvsgdr 32 
                  ++  v+i+i+g+  G f++g+r
  CCG91475.1 749 NIANTVAIAIGGIAQGQFTNGER 771
                 567789***************98 PP

>> CnrY  Anti-sigma factor CnrY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   8.5e-05      0.38      33      66 ..     429     462 ..     408     491 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CnrY  33 kemaqivlvarrdaqraivcaalaalvafvainr 66 
                 ++m +  ++a rd  r i  aa+aa va +ai  
  CCG91475.1 429 RDMKKTRVMAARDGAREITFAAMAATVAIIAIFL 462
                 5677777889999******************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1063 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1140  (0.0635841); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.51
# Mc/sec: 6257.21
//
Query:       CCG91476.1  [L=1084]
Description: Cation/multidrug efflux pump [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-246  820.9   0.6   4.4e-185  617.3   1.9    2.0  2  ACR_tran  AcrB/AcrD/AcrF family
    7.4e-07   28.4   2.8    7.4e-07   28.4   2.8    2.4  2  MMPL      MMPL family


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.5   0.0   3.7e-63   3.3e-59       2     247 ..       4     245 ..       3     258 .. 0.97
   2 !  617.3   1.9  4.9e-189  4.4e-185     252    1019 ..     299    1060 ..     270    1062 .. 0.96

  Alignments for each domain:
  == domain 1  score: 200.5 bits;  conditional E-value: 3.7e-63
                 HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS-HH CS
    ACR_tran   2 ikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtdid 100
                  +f+i+rp++a++l+ +++++G ls++sl ++ +P++++p ++v t+ pGa+pev+ese+++plE+ l  ++g+k ++S+   g+++i+l+F  +++id
  CCG91476.1   4 PEFAIRRPVAAWMLMAALVFFGLLSLFSLGISRFPDVTYPVITVVTQWPGAAPEVMESEIVDPLENVLVSVQGIKDIESTMLPGIANIKLEFYIDKNID 102
                 58************************************************************************************************* PP

                 HHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHHHCTT-- CS
    ACR_tran 101 iArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqklaklglt 199
                  A q+v++++ +++  LP +v++p+i ki++++s+il lavt +    + ++l +++++ i+d    v+G+gd+ql G +++++riwld ++l++l+++
  CCG91476.1 103 AALQEVNAKVRSVR--LPTDVNPPQIFKINQDDSPILWLAVTWD---RPLKDLVRYVDKYIRDRFMLVHGIGDIQLGGWADRNLRIWLDRKRLNQLQIS 196
                 ************96..9***************************...999************************************************* PP

                 HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEE.E CS
    ACR_tran 200 ltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivk.n 247
                 +td+++ l+++n + +aG+le +++e+++r+ g+  s+ +++ + ++  
  CCG91476.1 197 PTDIRDMLQAENIELGAGYLESKTNEINVRIMGEARSEYEMQSLALNhR 245
                 ******************************************9999742 PP

  == domain 2  score: 617.3 bits;  conditional E-value: 4.9e-189
                  EEEHHHCEEEEEEESSSSSEEEETTEEEEEEEEEEETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  252 kvrlrDvAkVelgaeeerlaatfngkpavllevkklpganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvv 348 
                   + l  vA Ve+g  + +  ++ +g+pa++l+++kl g n+i+vak+vke ++eLk+ lP+g+ i + +d + +++++++e+++tLl+ i   + v 
  CCG91476.1  299 YIPLSTVASVEDGIMDLTRLSRSDGQPAIGLGIQKLRGFNEIAVAKEVKELVKELKKDLPAGMAIGPRFDSSVYTQEAVHETEFTLLLTIFFTASVC 395 
                  566889******************************************************************************************* PP

                  HHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  349 flFLqnlratlipaiavPlsllgtfavlkalgfslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllav 445 
                  +lFL+++r+tl ++ ++P+s+lg f++ k+lg++lN +tL +L lA+G+vvDd+i v+Eni r+ +  g++p+ aal +++e+ +a +a +l+++av
  CCG91476.1  396 LLFLGSFRTTLNVLFSIPISILGSFIFFKFLGYTLNFFTLLALSLAVGIVVDDSIMVLENITRHKNL-GKDPQTAALDGANEVSFAALAATLSIVAV 491 
                  ****************************************************************999.***************************** PP

                  CTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH CS
    ACR_tran  446 flPilflgGveGklfrqfaltivlaillsvlvaltltPalcallLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsv 542 
                  f Pilf+gGv+Gk+  qf++++++a+l+s+l altl P+ +a +L+  keek++ f  + +r+f +  r Y++ll+  l++r++v++v ++++  s+
  CCG91476.1  492 FCPILFVGGVVGKFLSQFGVALSVAVLISLLEALTLAPMRVAEFLNVGKEEKKNYFEVWLDRVFWKFARIYRNLLKLALQKRWLVVSVSFLIFFFSL 588 
                  *****************************************************99****************************************** PP

                  HHHHCS-BESS----TSEEEEEEE-STTB-HHHHHHHHHHHHHHHHTTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHH CS
    ACR_tran  543 llfvripkeflPeedegvlvtsvqlppgvsleqtqkvlkqvekilkekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealier 639 
                   lf+ + ke+ P+ed g +++ +++p g+sl++t + ++ +e++lk++p v++vf+  G   sg   ++n + +fi+L p+ker   + + +++++ 
  CCG91476.1  589 RLFPALHKELSPSEDMGIALIRIETPVGSSLAHTGERVRFLEEYLKKQPYVAHVFSSIGG-YSG--GQVNFGALFITLTPRKER---KLRLQEILKI 679 
                  *******************************************************99996.444..69****************...889******* PP

                  HHHHCTTSTSSEEEEEETTSSCCCSSSSCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHH CS
    ACR_tran  640 lrkelkkipganvellapiqlreletlsgvrselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdin 736 
                   rke+kk    ++  +++i+++ +  +s + ++++  l g+++++L+e+++++l++l ++   +d+ +++ e+ p++q+ +dr+k a   +s+++  
  CCG91476.1  680 WRKEFKKAVYQDL-HIKIIDISQSAFSSKRGTNIELSLLGSEYSVLKEVSQKILNELDKSGMYTDLDTDYREGMPEVQIIPDRDKCALANISMQQLV 775 
                  ******9877774.467788888777888888888888*********************************************************** PP

                  HHHHHHHTTEEEEEE..EETTEEEEEEEEE-GGGSSSGGGGCCSEEEETTSC.EEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHH CS
    ACR_tran  737 dtletalggsyvndf..ieegrrvkvvvrleedlrsspedlkklkvrnkkgk.mvplsavakieeekgpnsierengsrsvvisgnvaegdslseae 830 
                  d +   +gg+  +     e+ rr+++ +r   +   +p+d++++++ +++g   + l++va+++      +++ren++r++++ +nv++ +s+ +a 
  CCG91476.1  776 DSVRYSIGGARQGMYtnEEDIRRYDIRIRFIPEQWREPKDIEAIPLWSNYGGePIHLKDVASLRVVPKLMNMTRENRRRVITLFANVKPEYSQAKAL 872 
                  *********665544115678*************************9998654******************************************** PP

                  HHHHHHCTT..SSTTEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHH CS
    ACR_tran  831 eavekiakkvklpegvtiewtgqaeqeqeasnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliG 927 
                  +  ++i +k  lp++++++++g+++ ++e+ + ++  +   l+l ++vL+++++s++ pl+il  +P+++ Ga+l+l++ +l+l++++ +Glill+G
  CCG91476.1  873 DYAMEICRK-LLPPTYSVQPAGASQTAKETFSAFPYALGFGLILAYMVLGIQFNSFLFPLIILCAIPFSISGAILSLYISKLSLNLYSGIGLILLMG 968 
                  *********.9************************************************************************************** PP

                  HHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  928 lavkNaillvefakelrekegksleeaileaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvl 1019
                  la+kN illvef++++r ++g++  +aileaa  RLrPiLMT+la+i  ++P al+ g G+e++ pl +vv+gG+v+st ++L++vP++Y l
  CCG91476.1  969 LAMKNSILLVEFINKKRFEDGLDTSAAILEAAFIRLRPILMTSLATISSAIPAALGLGPGAEVRVPLVMVVIGGIVVSTSFSLFVVPCIYSL 1060
                  ******************************************************************************************87 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   2.8   8.3e-11   7.4e-07     142     296 ..     377     529 ..     338     558 .. 0.85
   2 !    2.9   1.9    0.0047        42     108     224 ..     873     979 ..     851    1070 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 8.3e-11
        MMPL 142 drdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeav 240
                  +++ ++ ++t+   + + l+ ++S+ + l +l ++ +s+l ++    i+ ++lg +l+ f+l l+  l++++ +D  ++++  +    + g+d ++a+
  CCG91476.1 377 VHETEFTLLLTIFFTASVCLLFLGSFRTTLNVLFSIPISILGSF----IFFKFLGYTLNFFTL-LALSLAVGIVVDDSIMVLENITRHKNLGKDPQTAA 470
                 456677788888888999999******************98666....556677899987776.9999******************************* PP

        MMPL 241 iravastgkvvtaaGltvaiamlgLvvar...lpvlaqvGvaialGvlvdvlivlTllP 296
                  +  + +  + +aa+l +++ ++  +++     ++l+q+Gva++++vl+++l +lTl P
  CCG91476.1 471 LDGANEVSFAALAATLSIVAVFCPILFVGgvvGKFLSQFGVALSVAVLISLLEALTLAP 529
                 ************************99986222579**********************99 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.0047
        MMPL 108 aairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgl 206
                 +  +++ +++  +    v+ +G + t++++  a+ + l+     +l+++ ++L i + S++ +l++l  + +s+  a+ +++i    + l l+    g+
  CCG91476.1 873 DYAMEICRKLL-PPTYSVQPAGASQTAKETFSAFPYALG----FGLILAYMVLGIQFNSFLFPLIILCAIPFSISGAILSLYI----SKLSLN-LYSGI 961
                 44555555555.677778888888888887777766665....578899999******************9998666555333....333332.23345 PP

        MMPL 207 lvvlliavGtDYallLvs 224
                   +ll++ +    +lLv 
  CCG91476.1 962 GLILLMGLAMKNSILLVE 979
                 555555655555666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1084 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.48
# Mc/sec: 6793.10
//
Query:       CCG91477.1  [L=38]
Description: hypothetical protein MFUM_1050023 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 301.34
//
Query:       CCG91478.1  [L=201]
Description: TPR repeats containing protein (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-36  121.6  16.8    1.8e-09   37.0   0.7    5.1  5  TPR_1      Tetratricopeptide repeat
    2.4e-33  111.5  17.2    4.8e-08   32.5   0.4    5.2  5  TPR_2      Tetratricopeptide repeat
    6.7e-26   89.7  15.2    5.1e-09   35.7   1.1    5.5  5  TPR_11     TPR repeat
    1.1e-21   75.1  12.3    4.9e-05   23.2   0.1    5.2  5  TPR_8      Tetratricopeptide repeat
    1.3e-18   67.3   5.1    4.9e-08   33.5   0.1    3.2  3  TPR_16     Tetratricopeptide repeat
    1.4e-17   63.7   9.5      1e-07   32.1   0.2    3.6  3  TPR_12     Tetratricopeptide repeat
    1.7e-12   46.8   8.8    3.6e-05   23.8   0.3    5.3  4  TPR_17     Tetratricopeptide repeat
    2.3e-12   46.9   0.0       0.12   12.5   0.0    4.3  4  TPR_9      Tetratricopeptide repeat
    1.8e-11   43.2   7.1      0.013   15.5   0.0    5.2  5  TPR_7      Tetratricopeptide repeat
    2.6e-09   37.1   1.5       0.51   11.3   0.0    5.1  5  TPR_14     Tetratricopeptide repeat
    4.4e-07   29.6  12.0       0.34   10.8   0.1    5.0  5  TPR_10     Tetratricopeptide repeat
    3.3e-06   27.4   3.9         15    6.5   0.0    5.2  5  TPR_6      Tetratricopeptide repeat
    5.2e-06   25.8   3.4       0.48    9.9   0.1    4.9  5  SHNi-TPR   SHNi-TPR
    1.3e-05   25.6   3.3       0.16   12.5   0.2    3.1  4  TPR_19     Tetratricopeptide repeat
    0.00019   21.4   1.8        2.5    8.2   0.7    3.4  3  ANAPC5     Anaphase-promoting complex subunit 5
     0.0017   17.6   2.1      0.011   14.9   1.2    2.2  2  TPR_15     Tetratricopeptide repeat
     0.0019   17.7   4.6      0.022   14.2   0.4    2.6  3  SNAP       Soluble NSF attachment protein, SNAP
      0.002   18.1  11.2       0.28   11.3   0.1    4.6  5  MIT        MIT (microtubule interacting and transport) domain
      0.003   17.3   1.4        1.3    8.7   0.1    3.0  3  TPR_21     Tetratricopeptide repeat-like domain
     0.0031   17.6   2.1      0.076   13.1   0.9    3.0  2  DUF3856    Domain of Unknown Function (DUF3856)
  ------ inclusion threshold ------
      0.011   15.9   7.3       0.25   11.6   1.2    3.6  3  ANAPC3     Anaphase-promoting complex, cyclosome, subunit 3
      0.023   13.9   0.2          1    8.4   0.0    2.2  2  Rota_NSP3  Rotavirus non-structural protein NSP3
      0.055   13.2   3.4        2.4    7.8   0.2    3.1  3  RPN7       26S proteasome subunit RPN7
      0.098   12.8   1.4        3.9    7.7   0.0    3.0  4  KapB       Kinase associated protein B


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.3   0.00052      0.39      16      28 ..      34      46 ..      30      47 .. 0.88
   2 !   37.0   0.7   2.4e-12   1.8e-09       1      33 [.      57      89 ..      57      90 .. 0.96
   3 !   29.7   0.0   4.8e-10   3.6e-07       2      34 .]      91     123 ..      90     123 .. 0.94
   4 !   32.4   1.9     7e-11   5.2e-08       1      34 []     124     157 ..     124     157 .. 0.95
   5 !   19.5   0.0   8.5e-07   0.00063       6      31 ..     163     188 ..     159     189 .. 0.97

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00052
                -HHHHHHHHHHHH CS
       TPR_1 16 kydeAleyyekAL 28
                 y+eA+++y +A+
  CCG91478.1 34 SYEEAIAHYTQAI 46
                6***********9 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 2.4e-12
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALelnPn 33
                a a++n++ + f lg y +A+ +y++A+elnP+
  CCG91478.1 57 AIAYNNRADIWFALGHYYKAISDYNRAIELNPQ 89
                68******************************7 PP

  == domain 3  score: 29.7 bits;  conditional E-value: 4.8e-10
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 + ++++G +  klg+y++A+++y++ ++ n +n
  CCG91478.1  91 DYFNRRGIVEAKLGQYEKAIKDYSESIRRNRSN 123
                 679***************************987 PP

  == domain 4  score: 32.4 bits;  conditional E-value: 7e-11
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 a++++n+G a++k+g+y  A++++++AL+l  ++
  CCG91478.1 124 AYVYNNRGWALYKKGNYLSAIKDFNEALRLKSDY 157
                 789***************************9876 PP

  == domain 5  score: 19.5 bits;  conditional E-value: 8.5e-07
                 HHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   6 nlGnayfklgkydeAleyyekALeln 31 
                 n+G ++f++g+ +eAl + ++A++l+
  CCG91478.1 163 NRGWVHFRKGEREEALSDLSRAIQLD 188
                 9************************9 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.2   0.00034      0.25       7      28 ..      25      46 ..      23      48 .. 0.85
   2 !   32.5   0.4   6.5e-11   4.8e-08       1      33 [.      57      89 ..      57      90 .. 0.96
   3 !   23.9   0.0   3.8e-08   2.8e-05       2      33 ..      91     122 ..      90     123 .. 0.92
   4 !   30.5   1.1   2.8e-10   2.1e-07       1      32 [.     124     155 ..     124     157 .. 0.93
   5 !   22.3   0.0   1.2e-07   8.8e-05       1      31 [.     158     188 ..     158     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00034
       TPR_2  7 lGlayyklgdyeeAleafekAl 28
                 Gl   + + yeeA++++ +A+
  CCG91478.1 25 AGLNEQYHKSYEEAIAHYTQAI 46
                5777788999***********8 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 6.5e-11
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldPn 33
                a a++n+++++++lg+y +A+ ++++A+el+P+
  CCG91478.1 57 AIAYNNRADIWFALGHYYKAISDYNRAIELNPQ 89
                689*****************************7 PP

  == domain 3  score: 23.9 bits;  conditional E-value: 3.8e-08
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 ++ +++G + +klg+ye+A++++ ++++ +  
  CCG91478.1  91 DYFNRRGIVEAKLGQYEKAIKDYSESIRRNRS 122
                 7899***********************99876 PP

  == domain 4  score: 30.5 bits;  conditional E-value: 2.8e-10
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldP 32 
                 a++++n+G+a+yk+g+y  A+++f++Al+l  
  CCG91478.1 124 AYVYNNRGWALYKKGNYLSAIKDFNEALRLKS 155
                 689**************************975 PP

  == domain 5  score: 22.3 bits;  conditional E-value: 1.2e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a a  n+G++++++g+ eeAl ++ +A++ld
  CCG91478.1 158 ALAFDNRGWVHFRKGEREEALSDLSRAIQLD 188
                 57889*************************8 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00024      0.18       9      22 ..      34      47 ..      32      49 .. 0.92
   2 !   21.7   0.2   1.6e-07   0.00012       2      42 .]      65     104 ..      64     104 .. 0.88
   3 !   35.7   1.1   6.8e-12   5.1e-09       4      42 .]     100     138 ..      97     138 .. 0.95
   4 !   31.0   0.1     2e-10   1.5e-07       3      42 .]     133     172 ..     131     172 .. 0.96
   5 !   11.1   0.0   0.00033      0.25       3      24 ..     167     188 ..     165     189 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00024
      TPR_11  9 kyeeAieaYkkAlk 22
                 yeeAi++Y +A++
  CCG91478.1 34 SYEEAIAHYTQAID 47
                6***********96 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 1.6e-07
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 d+ +++G y +Ai +Y++A++l+P+ ++ ++ +G + +k+G
  CCG91478.1  65 DIWFALGHYYKAISDYNRAIELNPQ-PDYFNRRGIVEAKLG 104
                 7789********************6.899998888877776 PP

  == domain 3  score: 35.7 bits;  conditional E-value: 6.8e-12
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                   ++G+ye+Ai++Y++ ++ + +na +y+n+G a+yk+G
  CCG91478.1 100 EAKLGQYEKAIKDYSESIRRNRSNAYVYNNRGWALYKKG 138
                 5689*********************************99 PP

  == domain 4  score: 31.0 bits;  conditional E-value: 2e-10
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 a+y++G+y  Ai+++++Al+l++d+a a+ n+G +++++G
  CCG91478.1 133 ALYKKGNYLSAIKDFNEALRLKSDYALAFDNRGWVHFRKG 172
                 89************************************98 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 0.00033
      TPR_11   3 ayyeqGkyeeAieaYkkAlkld 24 
                 + + +G+ eeA+ ++++A++ld
  CCG91478.1 167 VHFRKGEREEALSDLSRAIQLD 188
                 5789*****************9 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.014        11      15      29 ..      33      47 ..      31      48 .. 0.90
   2 !   23.2   0.1   6.6e-08   4.9e-05       3      33 ..      59      89 ..      57      90 .. 0.95
   3 !   14.7   0.1   3.6e-05     0.027       5      33 ..      94     122 ..      90     123 .. 0.84
   4 !   22.8   1.0   8.8e-08   6.6e-05       2      33 ..     125     156 ..     124     157 .. 0.93
   5 !   12.7   0.0   0.00015      0.11       6      32 ..     163     189 ..     158     190 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
                T-HHHHHHHHHHHHH CS
       TPR_8 15 gdyeeAkeyyekale 29
                + yeeA++ y +a++
  CCG91478.1 33 KSYEEAIAHYTQAID 47
                579**********96 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 6.6e-08
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  3 ayynlgsiylklgdyeeAkeyyekaleldpd 33
                ay+n ++i + lg y +A++ y++a+el+p+
  CCG91478.1 59 AYNNRADIWFALGHYYKAISDYNRAIELNPQ 89
                8*****************************7 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++ g +  klg+ye+A++ y + ++ +++
  CCG91478.1  94 NRRGIVEAKLGQYEKAIKDYSESIRRNRS 122
                 666777789***************99986 PP

  == domain 4  score: 22.8 bits;  conditional E-value: 8.8e-08
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                  +y+n g+++ k+g+y +A++ +++al+l+ d
  CCG91478.1 125 YVYNNRGWALYKKGNYLSAIKDFNEALRLKSD 156
                 68***************************987 PP

  == domain 5  score: 12.7 bits;  conditional E-value: 0.00015
                 HHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldp 32 
                 n g++++ +g+ eeA + + +a++ld+
  CCG91478.1 163 NRGWVHFRKGEREEALSDLSRAIQLDR 189
                 89***********************96 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.4     2e-09   1.5e-06       3      66 ..      25      89 ..      23      89 .. 0.92
   2 !   33.5   0.1   6.6e-11   4.9e-08       4      67 ..      97     157 ..      95     158 .. 0.92
   3 !   18.5   0.1   3.1e-06    0.0023      11      61 ..     138     185 ..     137     189 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2e-09
      TPR_16  3 laraalragdyddAaaaleaalkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraalraapd 66
                +++   +++ y++A+a +++a++++  s +  a A+++++d+++++g + +A+  y++a++  p+
  CCG91478.1 25 AGLNEQYHKSYEEAIAHYTQAIDSGELSREtLAIAYNNRADIWFALGHYYKAISDYNRAIELNPQ 89
                6777889999***************99999***********************999999998886 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 6.6e-11
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 +   +++g+y++A++ + + ++r+     +a  ++++g+a++++g++  A+  +++alr  +d+
  CCG91478.1  97 GIVEAKLGQYEKAIKDYSESIRRN---RSNAYVYNNRGWALYKKGNYLSAIKDFNEALRLKSDY 157
                 5567899*****************...************************9999999988775 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 3.1e-06
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 g+y  A++ +++al++    +d a A  ++g++++r+g+ +eA+  + +a+
  CCG91478.1 138 GNYLSAIKDFNEALRLK---SDYALAFDNRGWVHFRKGEREEALSDLSRAI 185
                 89***************...************************7666665 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   1.9   1.1e-07   8.6e-05      14      75 ..      30      87 ..      23      89 .. 0.87
   2 !   32.1   0.2   1.4e-10     1e-07       7      75 ..      94     154 ..      91     156 .. 0.88
   3 !   12.0   0.0   0.00025      0.19      44      76 ..     157     189 ..     154     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.1e-07
      TPR_12 14 rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75
                ++ + y+eA++++ +a++  + +   +   +a++++n +++ +alg+y +A++ +++a+++ 
  CCG91478.1 30 QYHKSYEEAIAHYTQAIDSGELS--RET--LAIAYNNRADIWFALGHYYKAISDYNRAIELN 87
                55578***********9999755..666..***********99****************985 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 1.4e-10
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 n+++ v+++lg+y++A++ + +++++ r          a +++n g+++++ g+y  A++ ++eal+++
  CCG91478.1  94 NRRGIVEAKLGQYEKAIKDYSESIRRNR--------SNAYVYNNRGWALYKKGNYLSAIKDFNEALRLK 154
                 5699*******************66663........25779*************************986 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00025
      TPR_12  44 tattlrnLgrlyralgryeeAlelleealaiae 76 
                 +a +  n g+++++ g+ eeAl+ l +a+++++
  CCG91478.1 157 YALAFDNRGWVHFRKGEREEALSDLSRAIQLDR 189
                 6889999*****************999999876 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.5   0.00086      0.64      11      34 .]      62      85 ..      35      85 .. 0.85
   2 !   10.2   0.1    0.0011      0.83       2      34 .]      80     111 ..      79     111 .. 0.92
   3 !   23.8   0.3   4.8e-08   3.6e-05       2      33 ..     113     144 ..     112     145 .. 0.93
   4 ?    5.9   0.0     0.026        19       2      32 ..     147     177 ..     146     179 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00086
      TPR_17 11 nnadaynnLAelllknGdlmtArq 34
                n ad ++ L+ +++ + d+ +A++
  CCG91478.1 62 NRADIWFALGHYYKAISDYNRAIE 85
                338899999999999999999875 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0011
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 y +a+el+P  +d +n ++ + +k+G++++A++
  CCG91478.1  80 YNRAIELNPQ-PDYFNRRGIVEAKLGQYEKAIK 111
                 8999999996.999*****************85 PP

  == domain 3  score: 23.8 bits;  conditional E-value: 4.8e-08
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 y ++++++ +na++ynn++++l+k+G++  A+
  CCG91478.1 113 YSESIRRNRSNAYVYNNRGWALYKKGNYLSAI 144
                 7899***********************98886 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.026
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 + +al+l  ++a a+ n+++++ ++G+ ++A
  CCG91478.1 147 FNEALRLKSDYALAFDNRGWVHFRKGEREEA 177
                 689*******************999988777 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00016      0.12      34      62 ..      62      90 ..      55      95 .. 0.92
   2 !   10.2   0.0   0.00089      0.67      35      53 ..      96     114 ..      89     124 .. 0.87
   3 !   10.0   0.0     0.001      0.76      30      61 ..     125     156 ..     120     161 .. 0.86
   4 !   11.8   0.1   0.00028      0.21      22      60 ..     151     189 ..     148     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00016
       TPR_9 34 dRGlllaqlGclsaAladLeaylalapda 62
                 R+ + + lG++ +A+ d +++++l+p++
  CCG91478.1 62 NRADIWFALGHYYKAISDYNRAIELNPQP 90
                79*************************86 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00089
       TPR_9  35 RGlllaqlGclsaAladLe 53 
                 RG+++a+lG++++A++d  
  CCG91478.1  96 RGIVEAKLGQYEKAIKDYS 114
                 9***************986 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.001
       TPR_9  30 eerrdRGlllaqlGclsaAladLeaylalapd 61 
                 + +  RG +l++ G++  A++d++ +l+l  d
  CCG91478.1 125 YVYNNRGWALYKKGNYLSAIKDFNEALRLKSD 156
                 55678********************9988765 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 0.00028
       TPR_9  22 lllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 l l++d +     RG ++++ G  ++Al dL ++++l+ 
  CCG91478.1 151 LRLKSDYALAFDNRGWVHFRKGEREEALSDLSRAIQLDR 189
                 7788888999999**********************9986 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0023       1.8      15      34 ..      35      52 ..      35      54 .. 0.84
   2 !   15.5   0.0   1.7e-05     0.013       1      30 [.      59      88 ..      59      91 .. 0.85
   3 ?    6.2   0.1     0.017        12      11      30 ..     102     119 ..      99     125 .. 0.78
   4 ?    2.5   0.1      0.25   1.8e+02       2      30 ..     127     155 ..     126     157 .. 0.85
   5 !   10.2   0.0   0.00085      0.63       1      29 [.     160     188 ..     160     194 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0023
       TPR_7 15 yeeAielyeqsLaltkdped 34
                yeeAi +y+q  a+++ ++ 
  CCG91478.1 35 YEEAIAHYTQ--AIDSGELS 52
                9*********..99887765 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.7e-05
       TPR_7  1 aLlnLarlysrlGdyeeAielyeqsLaltk 30
                a++n a+++++lG+y +Ai+ y ++++l  
  CCG91478.1 59 AYNNRADIWFALGHYYKAISDYNRAIELNP 88
                79**********************555544 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.017
       TPR_7  11 rlGdyeeAielyeqsLaltk 30 
                 +lG+ye+Ai+ y +   +++
  CCG91478.1 102 KLGQYEKAIKDYSE--SIRR 119
                 69*******99988..5555 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.25
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltk 30 
                 ++n + +  + G+y  Ai+ + ++L+l +
  CCG91478.1 127 YNNRGWALYKKGNYLSAIKDFNEALRLKS 155
                 899999*9999***999999999887766 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00085
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLalt 29 
                 a++n + +++r G++eeA++ + ++++l+
  CCG91478.1 160 AFDNRGWVHFRKGEREEALSDLSRAIQLD 188
                 57899**************9888866665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.78   5.8e+02      17      31 ..      35      49 ..      22      60 .. 0.75
   2 !   11.3   0.0   0.00068      0.51       7      35 ..      63      91 ..      56      96 .. 0.87
   3 !    9.6   0.0    0.0025       1.8       6      36 ..      95     125 ..      90     131 .. 0.86
   4 ?    4.2   0.0      0.13        99       7      34 ..     130     157 ..     126     162 .. 0.82
   5 ?    6.4   0.1     0.026        19       7      31 ..     164     188 ..     158     189 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.78
      TPR_14 17 pdeAiallrralala 31
                ++eAia++ +a++ +
  CCG91478.1 35 YEEAIAHYTQAIDSG 49
                788999998888755 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00068
      TPR_14  7 laeallalGdpdeAiallrralalaPdda 35
                +a++ +alG + +Ai  ++ra++l+P+++
  CCG91478.1 63 RADIWFALGHYYKAISDYNRAIELNPQPD 91
                789999********************976 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0025
      TPR_14   6 alaeallalGdpdeAiallrralalaPddae 36 
                 +++ +++ lG++++Ai+ + + ++++ ++a 
  CCG91478.1  95 RRGIVEAKLGQYEKAIKDYSESIRRNRSNAY 125
                 68999******************99988875 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.13
      TPR_14   7 laeallalGdpdeAiallrralalaPdd 34 
                 +++al+  G++  Ai+ +++al+l  d 
  CCG91478.1 130 RGWALYKKGNYLSAIKDFNEALRLKSDY 157
                 6789999999999999999999976555 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.026
      TPR_14   7 laeallalGdpdeAiallrralala 31 
                 +++++++ G+ +eA+  l ra++l+
  CCG91478.1 164 RGWVHFRKGEREEALSDLSRAIQLD 188
                 799******************9975 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.85   6.4e+02      18      30 ..      35      47 ..      30      50 .. 0.82
   2 !    6.9   0.5    0.0076       5.7       2      31 ..      57      86 ..      56      87 .. 0.93
   3 ?    5.5   0.1     0.022        16       9      33 ..      97     121 ..      92     122 .. 0.86
   4 !   10.8   0.1   0.00045      0.34       2      31 ..     124     153 ..     124     154 .. 0.92
   5 !   10.1   0.0   0.00078      0.58       4      31 ..     160     187 ..     158     191 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.85
      TPR_10 18 ydeAealleeala 30
                y+eA a++ +a++
  CCG91478.1 35 YEEAIAHYTQAID 47
                8999999999986 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0076
      TPR_10  2 AsslnNLanalrqrgrydeAealleealai 31
                A ++nN a + +++g y +A  ++ +a+++
  CCG91478.1 57 AIAYNNRADIWFALGHYYKAISDYNRAIEL 86
                779************************985 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.022
      TPR_10   9 analrqrgrydeAealleealairr 33 
                 +++  ++g+y++A +++ e++++ r
  CCG91478.1  97 GIVEAKLGQYEKAIKDYSESIRRNR 121
                 889999************9998865 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00045
      TPR_10   2 AsslnNLanalrqrgrydeAealleealai 31 
                 A  +nN + al++ g+y  A +++ eal++
  CCG91478.1 124 AYVYNNRGWALYKKGNYLSAIKDFNEALRL 153
                 668************************985 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00078
      TPR_10   4 slnNLanalrqrgrydeAealleealai 31 
                 +  N + ++++ g+++eA+ +l +a+++
  CCG91478.1 160 AFDNRGWVHFRKGEREEALSDLSRAIQL 187
                 66799********************986 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.42   3.2e+02       7      28 ..      26      47 ..      22      48 .. 0.73
   2 ?    5.8   0.0     0.033        25       6      32 ..      63      89 ..      58      90 .. 0.90
   3 ?    5.4   0.0     0.046        34       6      26 ..      96     116 ..      95     122 .. 0.75
   4 ?    4.2   0.0      0.11        79       6      27 ..     130     151 ..     129     153 .. 0.83
   5 ?    6.5   0.0      0.02        15       2      28 ..     160     186 ..     159     188 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.42
                HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  7 alsyrklgdtdkAlealerlik 28
                +l  +  + +++A++ + + i+
  CCG91478.1 26 GLNEQYHKSYEEAIAHYTQAID 47
                555555568999**99999987 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.033
                HHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6  6 lalsyrklgdtdkAlealerlikeYPd 32
                +a   ++lg + kA+  ++r i+  P+
  CCG91478.1 63 RADIWFALGHYYKAISDYNRAIELNPQ 89
                688889999**************9996 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.046
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerl 26 
                 ++    klg+++kA++ + + 
  CCG91478.1  96 RGIVEAKLGQYEKAIKDYSES 116
                 5667778999**999988665 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerli 27 
                 ++++++k g++  A++ +++ +
  CCG91478.1 130 RGWALYKKGNYLSAIKDFNEAL 151
                 7999**9889999999998876 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlik 28 
                 A+ ++++ +++ g+ ++Al  l r i+
  CCG91478.1 160 AFDNRGWVHFRKGEREEALSDLSRAIQ 186
                 56689******99*******9999987 PP

>> SHNi-TPR  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         3   2.2e+03      17      28 ..      35      46 ..      34      47 .. 0.73
   2 ?    5.1   0.0      0.02        15      18      30 ..      74      86 ..      64      89 .. 0.85
   3 ?    4.5   0.0     0.031        23      16      28 ..     105     117 ..     103     118 .. 0.89
   4 !    9.9   0.1   0.00064      0.48      15      31 ..     138     154 ..     136     159 .. 0.89
   5 ?    2.8   0.2      0.11        82      18      30 ..     175     187 ..     175     189 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3
    SHNi-TPR 17 FpqAveDlrkaL 28
                +++A+  ++ a+
  CCG91478.1 35 YEEAIAHYTQAI 46
                788888887775 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.02
    SHNi-TPR 18 pqAveDlrkaLeL 30
                  A++D+++a+eL
  CCG91478.1 74 YKAISDYNRAIEL 86
                569********98 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.031
    SHNi-TPR  16 nFpqAveDlrkaL 28 
                 +++ A++D+ +++
  CCG91478.1 105 QYEKAIKDYSESI 117
                 89*******9996 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00064
    SHNi-TPR  15 enFpqAveDlrkaLeLr 31 
                 +n+  A++D+++aL L+
  CCG91478.1 138 GNYLSAIKDFNEALRLK 154
                 69999**********98 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.11
    SHNi-TPR  18 pqAveDlrkaLeL 30 
                 ++A++Dl +a++L
  CCG91478.1 175 EEALSDLSRAIQL 187
                 69********998 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.2   0.00022      0.16       5      61 ..      33      92 ..      28      96 .. 0.82
   2 !    8.4   0.0    0.0041       3.1       4      46 ..      70     111 ..      67     131 .. 0.79
   3 !   11.2   0.3   0.00056      0.42       5      54 ..     104     153 ..     100     161 .. 0.87
   4 !    7.8   0.1    0.0063       4.7       1      48 [.     134     181 ..     134     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00022
      TPR_19  5 gdyaeAlalleqal...qedpknaearl.lLAeallalgqldeAealLdalpeedpddary 61
                + y+eA+a+++qa+   + + + +++++ + A++ +alg++ +A+   +++ e +p+ ++y
  CCG91478.1 33 KSYEEAIAHYTQAIdsgELSRETLAIAYnNRADIWFALGHYYKAISDYNRAIELNPQ-PDY 92
                579*********985545588888888866699999999999999988888888888.777 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0041
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46 
                  g y  A++ + +a++ +p+ ++      ++  +lgq+++A++
  CCG91478.1  70 LGHYYKAISDYNRAIELNPQPDYFNR-RGIVEAKLGQYEKAIK 111
                 577888999999*******6555555.9*************87 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00056
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpee 54 
                 g+y+ A++ +++ +  +  na++  +   al++ g++  A++  +++++ 
  CCG91478.1 104 GQYEKAIKDYSESIRRNRSNAYVYNNRGWALYKKGNYLSAIKDFNEALRL 153
                 9************************************9998766666655 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0063
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealL 48 
                 l++ g+y +A++ + +al  + ++a a  +   +++  g+ +eA   L
  CCG91478.1 134 LYKKGNYLSAIKDFNEALRLKSDYALAFDNRGWVHFRKGEREEALSDL 181
                 6789***********************999999999999999997655 PP

>> ANAPC5  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.7    0.0034       2.5      10      70 ..      27      86 ..      20      89 .. 0.88
   2 ?    5.2   0.0     0.029        22      49      74 ..      98     123 ..      94     128 .. 0.88
   3 ?    4.8   0.0     0.039        29      38      72 ..     155     189 ..     135     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0034
      ANAPC5 10 rakdYqqaldsLhryFDyvlsqnessqkksyqyalLnlaslhadfghneeAvkaleeairl 70
                 +++Y+++ ++   ++  ++ + e s ++++ +a  n a +  ++gh+ +A++  + ai+l
  CCG91478.1 27 LNEQYHKSYEEAIAHYTQAIDSGELS-RETLAIAYNNRADIWFALGHYYKAISDYNRAIEL 86
                56789999999999999999999999.99************************99999986 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.029
      ANAPC5  49 slhadfghneeAvkaleeairlAren 74 
                 +++a++g++e+A+k  +e+ir  r n
  CCG91478.1  98 IVEAKLGQYEKAIKDYSESIRRNRSN 123
                 67899***************988877 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.039
      ANAPC5  38 ksyqyalLnlaslhadfghneeAvkaleeairlAr 72 
                   y  a  n   +h + g++eeA++ l+ ai+l r
  CCG91478.1 155 SDYALAFDNRGWVHFRKGEREEALSDLSRAIQLDR 189
                 46777888888999999**************9876 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.2   1.5e-05     0.011      92     210 ..      30     151 ..      20     162 .. 0.79
   2 ?    1.7   0.0      0.17   1.2e+02     147     176 ..     159     188 ..     141     196 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-05
      TPR_15  92 epkeaarlaekgwrrfrsprlL...ssalellerakdydriaellksleeeea...aeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselra 184
                 ++ ++++ a++ + +  ++  L   + a+ + +ra  + +++   k ++ +++   ++ ++ ++ +r+ ++ + gq ++A++dy e ++++  ++ + +
  CCG91478.1  30 QYHKSYEEAIAHYTQAIDSGELsreTLAIAYNNRADIWFALGHYYKAISDYNRaieLNPQPDYFNRRGIVEAKLGQYEKAIKDYSESIRRNRSNAYVYN 128
                 566667777777777766666622257999****************999655544599***********************************999999 PP

      TPR_15 185 allWlliDlgrraeLrellkawkara 210
                 +  W+l   g++ +   ++k ++++ 
  CCG91478.1 129 NRGWALYKKGNYLS---AIKDFNEAL 151
                 99999998887764...666666555 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.17
      TPR_15 147 afllaraelyrqegqtdaAlrdyreAlala 176
                 + +  r+ ++ ++g+ ++Al d+ +A++l+
  CCG91478.1 159 LAFDNRGWVHFRKGEREEALSDLSRAIQLD 188
                 445556777788888888888888888775 PP

>> SNAP  Soluble NSF attachment protein, SNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.4   2.9e-05     0.022     121     182 ..      25      84 ..      19      90 .. 0.88
   2 ?    4.5   0.3     0.027        20     165     188 ..     100     123 ..      94     158 .. 0.76
   3 ?   -1.4   0.0       1.7   1.3e+03      72      72 ..     155     155 ..     134     187 .. 0.47

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.9e-05
                 HHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
        SNAP 121 aelyekelgdlekAieaYekAaelyeqeeakalankcllkvAelsaelekyekAieiyekva 182
                 a l e+  + +e+Ai++Y++A +  ++e +  +   ++ + A++   l++y kAi  y++ +
  CCG91478.1  25 AGLNEQYHKSYEEAIAHYTQAID--SGELSRETLAIAYNNRADIWFALGHYYKAISDYNRAI 84 
                 5667777788*************..899999999999*********************9876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.027
                 HHHTT-HHHHHHHHHHHHHTTSS- CS
        SNAP 165 saelekyekAieiyekvakkslen 188
                 +a+l++yekAi+ y++ +++  +n
  CCG91478.1 100 EAKLGQYEKAIKDYSESIRRNRSN 123
                 678888888888888887766554 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.7
                 H CS
        SNAP  72 d 72 
                 +
  CCG91478.1 155 S 155
                 2 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00038      0.28       4      32 ..      19      47 ..      16      48 .. 0.86
   2 ?    2.5   0.2       0.2   1.5e+02      18      33 ..      71      86 ..      57      87 .. 0.90
   3 !    7.3   0.0    0.0067         5      12      31 ..      98     117 ..      94     119 .. 0.86
   4 ?    1.0   0.2      0.59   4.4e+02      17      32 ..     137     152 ..     133     159 .. 0.79
   5 ?   -1.5   0.0       3.6   2.7e+03       3      15 ..     176     188 ..     170     189 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00038
         MIT  4 AlelvkkAveeDnagnyeeAlelYkeale 32
                +l+ +++  +e  ++ yeeA+  Y++a++
  CCG91478.1 19 GLQEFQAGLNEQYHKSYEEAIAHYTQAID 47
                67777888899999*************98 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.2
         MIT 18 gnyeeAlelYkealel 33
                g+y +A++ Y  a+el
  CCG91478.1 71 GHYYKAISDYNRAIEL 86
                7899999999999986 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0067
         MIT  12 veeDnagnyeeAlelYkeal 31 
                 + e + g+ye+A++ Y+e++
  CCG91478.1  98 IVEAKLGQYEKAIKDYSESI 117
                 677899************98 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.59
         MIT  17 agnyeeAlelYkeale 32 
                 +gny  A++ + eal+
  CCG91478.1 137 KGNYLSAIKDFNEALR 152
                 6888888888888876 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 3.6
         MIT   3 kAlelvkkAveeD 15 
                 +Al+ +++A+++D
  CCG91478.1 176 EALSDLSRAIQLD 188
                 4555556666665 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1    0.0017       1.3     147     189 ..      58     104 ..      32     108 .. 0.84
   2 ?    6.1   0.1     0.011       7.9     122     176 ..      99     154 ..      98     170 .. 0.87
   3 ?    2.2   0.1      0.17   1.2e+02     126     174 ..     137     186 ..     133     195 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0017
      TPR_21 147 lvaelrGDilvaqgkldeAraaYqaAlaaleeka....rellqlKld 189
                  + + r Di++a g+  +A + Y++A++ + + +    r +++ Kl 
  CCG91478.1  58 IAYNNRADIWFALGHYYKAISDYNRAIELNPQPDyfnrRGIVEAKLG 104
                 5556789***********************99999999999999995 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.011
      TPR_21 122 vllaekkydeAlktL.eakkeeafaalvaelrGDilvaqgkldeAraaYqaAlaal 176
                 v ++ ++y++A+k   e+ +++  +a v + rG +l+++g+   A + +++Al+ +
  CCG91478.1  99 VEAKLGQYEKAIKDYsESIRRNRSNAYVYNNRGWALYKKGNYLSAIKDFNEALRLK 154
                 66788999***999956778889999999***********************9765 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.17
      TPR_21 126 ekkydeAlktLeakke.eafaalvaelrGDilvaqgkldeAraaYqaAla 174
                 +++y  A+k  +++ + ++  al+ + rG +++++g+++eA +  ++A++
  CCG91478.1 137 KGNYLSAIKDFNEALRlKSDYALAFDNRGWVHFRKGEREEALSDLSRAIQ 186
                 55555666666444321344567778999999999999999888888876 PP

>> DUF3856  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.9    0.0001     0.076      22      97 ..      32     105 ..      13     156 .. 0.74
   2 ?   -0.1   0.0       1.2   9.1e+02      20      43 ..     169     192 ..     154     201 .] 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0001
                 HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH CS
     DUF3856  22 egayeeaaasyrkalevsrtipaeeafdheGfdalchaglsealaklgrydealesadkalryfnrrGeleqdeGk 97 
                 +++yeea a+y +a++      +  a  ++    + + +l + +  + +y+ a+e       yfnrrG +e   G+
  CCG91478.1  32 HKSYEEAIAHYTQAIDSGELSRETLAIAYNNRADIWF-ALGHYYKAISDYNRAIELNP-QPDYFNRRGIVEAKLGQ 105
                 4568888888888888776666666777766544444.47777777777777776544.458******88877664 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.2
                 HHHT-HHHHHHHHHHHHHHHTTS- CS
     DUF3856  20 leegayeeaaasyrkalevsrtip 43 
                 +++g+ eea  + ++a+++ r i 
  CCG91478.1 169 FRKGEREEALSDLSRAIQLDRIIQ 192
                 567777888888888888777554 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.9     0.052        39       3      76 ..      33     110 ..      31     116 .. 0.60
   2 ?   11.6   1.2   0.00033      0.25       6      52 ..     107     154 ..      99     161 .. 0.75
   3 ?   -0.2   0.0       1.6   1.2e+03      31      50 ..     166     186 ..     156     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.052
                 T-HHHHHHHHHHHH....HHH--HHHHHHH.HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3   3 nnyknAiflaerll...aaetespedayll.AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAi 76 
                 + y++Ai ++  +    + ++e +  ay   A   + +g y++A+  +++a +ln++ + +    + +  kL++ye+Ai
  CCG91478.1  33 KSYEEAIAHYTQAIdsgELSRETLAIAYNNrADIWFALGHYYKAISDYNRAiELNPQ-PDYFNRRGIVEAKLGQYEKAI 110
                 567788888888884332333333333433688888888888888888888444443.344444555555666666665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00033
                 HHHHHHHHHHH.HHH--HHHHHHH...HHHHHHTT-HHHHHHHHHCT.SHH CS
      ANAPC3   6 knAiflaerllaaetespedayll...AlclylngqykrAyellrka.kln 52 
                 ++Ai  ++   ++ +++ ++ay +   + +ly+ g+y +A++ +++a +l+
  CCG91478.1 107 EKAIKDYS---ESIRRNRSNAYVYnnrGWALYKKGNYLSAIKDFNEAlRLK 154
                 33333333...35699999****999****************999994443 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.6
                 HHHHHTT-HHHHHHHHHCT.S CS
      ANAPC3  31 lclylngqykrAyellrka.k 50 
                  ++++ g+ ++A+  l++a +
  CCG91478.1 166 WVHFRKGEREEALSDLSRAiQ 186
                 589999999999999998844 PP

>> Rota_NSP3  Rotavirus non-structural protein NSP3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0014         1     209     250 ..      47      89 ..      24     103 .. 0.70
   2 ?    3.0   0.0     0.063        47     218     247 ..     125     154 ..     120     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
   Rota_NSP3 209 vstilgae.l.kvyneklerlldvGsltsskeiieksieleiPi 250
                  s  l  e l   yn++ +  + +G + +++  ++++iel+ P+
  CCG91478.1  47 DSGELSREtLaIAYNNRADIWFALGHYYKAISDYNRAIELN-PQ 89 
                 4444443313146***************************9.64 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.063
   Rota_NSP3 218 kvyneklerlldvGsltsskeiieksiele 247
                  vyn+++  l++ G+++s+++ ++ ++ l+
  CCG91478.1 125 YVYNNRGWALYKKGNYLSAIKDFNEALRLK 154
                 69*****************99888887765 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0032       2.4       9      64 ..      32      85 ..      25      93 .. 0.83
   2 ?    3.7   0.3     0.058        44       5      58 ..      99     153 ..      94     159 .. 0.64
   3 ?    1.5   0.0      0.28   2.1e+02      31      64 ..     153     186 ..     142     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0032
                HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCC CS
        RPN7  9 rkknekeleeLdaelkdakenlgkeeirrakldlaehYlkigdleeAlkaysrire 64
                 k+ e+ +++  + ++    +l  e  + a++++a+ ++  g++ +A+  y+r++e
  CCG91478.1 32 HKSYEEAIAHYTQAIDS--GELSRETLAIAYNNRADIWFALGHYYKAISDYNRAIE 85
                56677777777777777..8999999999************************987 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.058
                 HHHHHHHHHHHHHHHHHHHHHHH.HTT-HHHHHHHHHHHHHHHHHCT-HHHHHHH CS
        RPN7   5 veelrkknekeleeLdaelkdak.enlgkeeirrakldlaehYlkigdleeAlka 58 
                 ve+   + ek +++  + +++ + + ++  +   a ++++++   i d++eAl++
  CCG91478.1  99 VEAKLGQYEKAIKDYSESIRRNRsNAYVYNNRGWALYKKGNYLSAIKDFNEALRL 153
                 5555566666777777777776633344445555677777777777777777765 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.28
                 -HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCC CS
        RPN7  31 gkeeirrakldlaehYlkigdleeAlkaysrire 64 
                  k++ + a ++++  +++ g++eeAl  +sr+++
  CCG91478.1 153 LKSDYALAFDNRGWVHFRKGEREEALSDLSRAIQ 186
                 5778888888999999999*******99999875 PP

>> KapB  Kinase associated protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.22   1.6e+02      59      79 ..      27      47 ..      18      69 .. 0.74
   2 ?   -2.4   0.0       7.3   5.4e+03      52      77 ..      59      83 ..      49      86 .. 0.61
   3 ?    7.7   0.0    0.0053       3.9      54      81 ..      93     120 ..      90     131 .. 0.84
   4 ?   -0.9   0.0       2.4   1.8e+03       1      15 [.     135     149 ..     135     170 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.22
        KapB 59 vpkeavkpyegevpdYeeSlk 79
                ++++  k+ye+++ +Y++++ 
  CCG91478.1 27 LNEQYHKSYEEAIAHYTQAID 47
                456677888888888887765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 7.3
        KapB 52 sykEktnvpkeavkpyegevpdYeeS 77
                +y++++ +   a+ +y +++ dY+ +
  CCG91478.1 59 AYNNRADIWF-ALGHYYKAISDYNRA 83
                5555555543.355666778888765 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0053
        KapB  54 kEktnvpkeavkpyegevpdYeeSlkea 81 
                 ++++ + ++++ +ye+++ dY+eS+++ 
  CCG91478.1  93 FNRRGIVEAKLGQYEKAIKDYSESIRRN 120
                 566778889999*************975 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 2.4
        KapB   1 yktGkYigevveere 15 
                 yk G+Y++ +++ +e
  CCG91478.1 135 YKKGNYLSAIKDFNE 149
                 788888888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 1277.74
//
Query:       CCG91479.1  [L=53]
Description: hypothetical protein MFUM_1070002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-05   22.2   0.0    0.00017   21.2   0.0    1.5  1  TPR_1     Tetratricopeptide repeat
    0.00021   20.9   0.0    0.00034   20.2   0.0    1.4  1  TPR_11    TPR repeat
    0.00033   20.5   0.1    0.00085   19.3   0.0    1.7  1  TPR_2     Tetratricopeptide repeat
     0.0019   17.6   0.0     0.0028   17.1   0.0    1.4  1  SHNi-TPR  SHNi-TPR
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.033   14.4   0.0    1.8  1  TPR_8     Tetratricopeptide repeat
       0.17   11.8   0.0       0.24   11.3   0.0    1.3  1  TPR_10    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.8e-08   0.00017      13      34 .]       3      24 ..       2      24 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.8e-08
                HTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1 13 klgkydeAleyyekALelnPnn 34
                 lg++deAl +++ AL l P++
  CCG91479.1  3 DLGRFDEALNDFNTALNLKPHF 24
                69******************96 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.1e-07   0.00034       6      27 ..       3      24 ..       1      27 [. 0.89

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.1e-07
      TPR_11  6 eqGkyeeAieaYkkAlkldPdn 27
                ++G+++eA++++++Al+l+P +
  CCG91479.1  3 DLGRFDEALNDFNTALNLKPHF 24
                89*****************965 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.8e-07   0.00085      14      33 ..       4      23 ..       2      24 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.8e-07
       TPR_2 14 lgdyeeAleafekAleldPn 33
                lg+++eAl++f+ Al l P+
  CCG91479.1  4 LGRFDEALNDFNTALNLKPH 23
                8*****************97 PP

>> SHNi-TPR  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   9.5e-07    0.0028      15      31 ..       5      21 ..       4      29 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 9.5e-07
    SHNi-TPR 15 enFpqAveDlrkaLeLr 31
                ++F++A+ D+++aL+L+
  CCG91479.1  5 GRFDEALNDFNTALNLK 21
                59**************8 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.1e-05     0.033      13      33 ..       3      23 ..       2      24 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-05
                HTT-HHHHHHHHHHHHHHHHH CS
       TPR_8 13 klgdyeeAkeyyekaleldpd 33
                +lg+++eA   ++ al l+p 
  CCG91479.1  3 DLGRFDEALNDFNTALNLKPH 23
                79*****************95 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.2e-05      0.24      13      31 ..       2      20 ..       1      21 [. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.2e-05
      TPR_10 13 rqrgrydeAealleealai 31
                +++gr+deA++++  al++
  CCG91479.1  2 TDLGRFDEALNDFNTALNL 20
                589**********999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 408.61
//
Query:       CCG91480.1  [L=330]
Description: Dihydroorotate dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-10   41.0   0.0    1.9e-10   40.4   0.0    1.2  1  DHO_dh    Dihydroorotate dehydrogenase
     0.0057   15.8   0.0       0.76    8.8   0.0    2.3  2  Dus       Dihydrouridine synthase (Dus)


Domain annotation for each model (and alignments):
>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   2.2e-14   1.9e-10      87     293 ..      86     282 ..      77     284 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 2.2e-14
                 HHHHHHCC.CEEEEEEE-TTSS.HHHHHHHHHHHHG.GGESEEEEES-SCTCCTSCCCGCHHHHHHHHHHHHHHHHSSEEEEEE-SSSSHHHHHHHHHH CS
      DHO_dh  87 rrkeqeekkelginlskakktenavddyvevvrkig.pfadilelNvSsPntpglrdlqekeelkaillkvvkevskvpvlvKlaPdltdeekkdiadv 184
                   +e ++k +++i++s ++k+      +   ++ki+   ad+lelN+    t   ++  + e  + ++++ v++  ++p+ +K++P +t+  +  +a+ 
  CCG91480.1  86 LIREAKNKVQIPIIASLNGKS---PGWWCRFAKKIEeAGADALELNIFWMPTDMDQSADSIEMFTLDIVRLVRQEIQIPLAIKISPFYTNVGN--MAKR 179
                 3444455688**********9...888999*****9778*********9999999999999999**********************7766655..5556 PP

                 HHHHTECEEEE...BSEE--CTTCCGCCCCTTSSEEEEEGGGHHHHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCH CS
      DHO_dh 185 llelkldgiivtNttvqrlaidlkseknvkanktGGlsGkalkdialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpki 283
                  l+ + +g++  N  +q   i++++ + +++   G  s      ++l+ i  l +rlk  + + ++GG+   +Da+  i  GA++v + + l ++gp  
  CCG91480.1 180 FLAAGANGLVLFNRFMQPG-INTEKIEIKSQMLLG-TSRD--TFLSLRWIGILFDRLK--VDLAATGGVIEPKDAIQLILVGATVVMLCSTLLKNGPEY 272
                 6666677777777776655.777776666654455.5544..4589************..**************************************9 PP

                 HHHHHHHHHH CS
      DHO_dh 284 akkikkelee 293
                  + ++k+l +
  CCG91480.1 273 LNVMEKGLVN 282
                 9999998866 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0016        15      49      87 ..      91     129 ..      56     130 .. 0.78
   2 !    8.8   0.0   8.5e-05      0.76     112     219 ..     149     268 ..     137     286 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0016
                 GGGGTSCEEEEEE-S-HHHHHHHHHHHHHTT-SCEEEEE CS
         Dus  49 eeeeetplavQlggsdpallaeaAklvadlgadeIdlNv 87 
                 +++ + p++  l g++p +   +Ak+ ++ gad+ +lN+
  CCG91480.1  91 KNKVQIPIIASLNGKSPGWWCRFAKKIEEAGADALELNI 129
                 33334788999999********************99995 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 8.5e-05
                 HHHHHHHCCSSS-EEEEEESESSTTTC.HHHHHHHHHHCT-SEEEEESS..............ECCCTT-C...G--CHHHHHHHHH-SS-EEEESS-- CS
         Dus 112 qivkavvkaveiPvtvkirigiddeeenalelakiveaaGaqaltvHgR..............traqnyeg...tadweaIkevkqavsipviaNGdIk 193
                 +iv+ v++ ++iP+ +ki+ +      n  ++ak+  aaGa+ l++  R              +++   +     + +++I  + +++++ + a G++ 
  CCG91480.1 149 DIVRLVRQEIQIPLAIKISPFY----TNVGNMAKRFLAAGANGLVLFNRfmqpgintekieikSQMLLGTSrdtFLSLRWIGILFDRLKVDLAATGGVI 243
                 5777777777777777777665....59999*************************999997755544433333678899******************* PP

                 SHHHHHHHHHHH--SEEEESCHHCCS CS
         Dus 194 daedaqaileetGadgvmigrgalgn 219
                 +++da + +   Ga  vm     l+n
  CCG91480.1 244 EPKDAIQLILV-GATVVMLCSTLLKN 268
                 *******9999.99999988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2680.01
//
Query:       CCG91481.1  [L=385]
Description: Na+/H+ antiporter [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-34  119.1  38.8    2.4e-34  118.8  38.8    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
  ------ inclusion threshold ------
        1.2    9.5  13.0       0.22   11.8   4.7    3.3  2  Transgly_assoc  Transglycosylase associated protein


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.8  38.8   2.7e-38   2.4e-34       4     375 ..      11     370 ..       8     375 .. 0.88

  Alignments for each domain:
  == domain 1  score: 118.8 bits;  conditional E-value: 2.7e-38
                     HHHHHHHHHHHHHHTTSXHHHHHHHHHHHHTTTTTS..........HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   4 lillallvgllarrlklpeivgliiaGlllGpsglglieps.....eedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvl 93 
                     +++la+++ +la  ++++  +++ii+G++  +    l+ ++     e ++ +l+ lg i+l F aG e+d+ ++rk +k+++ ++ll ++++++ 
      CCG91481.1  11 WMALAIFSAFLALQFRVSAALIEIIIGIFGQYLATFLFGKTglnpkEGWIAFLAGLGAIMLTFMAGSEIDPTSFRKQWKEATFIGLLTFFVPFFS 105
                     67777777777888888888888888775444333334444556668************************************************ PP

                     HHHHHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHHHHHH CS
  Na_H_Exchanger  94 iGlllylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllllliflvvav 188
                     +++++++  i+++++ +++l g++lsat+++v++++l e+g+ ++++g  ll +  +nD+++v+ll +l a            ++ ++ +  v++
      CCG91481.1 106 CSFFAHA--IFQWNWKASFLTGIALSATSVAVMYTVLLELGLNKTNYGKGLLVACFINDLSSVLLLGFLFAPF---------GWKTVVLTGCVLI 189
                     ******9..89********************************************************977766.........6788888999999 PP

                     HHHHHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTT.HHHHHHHHHH...HHHHHHHHHHHHH CS
  Na_H_Exchanger 189 gglllglvigwllrlitrftdddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnk.lseklesfre...glfnplfFvlvGl 279
                     g+l+l  +++++l++        +ele+   l ++++  ++a + g +++l a + G++l+++ +  +     ++ +r+   g + p++F+  G 
      CCG91481.1 190 GALILPKITPVFLKYYANK---PSELEIKYLLFFLFAFGGVAVWAGSEAVLPAYIIGMTLAGSMEQYRdF---IKRLRTvtlGMLTPFYFIRAGS 278
                     9999999999999999996...99999999999999999**********************888777534...455555555************* PP

                     HSXHHHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTTSSTTTCSTSXHHHHHHHH CS
  Na_H_Exchanger 280 sldlkvlnnhlsvlilvllilvaillgrilavflllrllglslrealiigfgglqrgavalalaalgpalgllarelyallivvvlftvlvqGls 374
                      +dl+ l   ++ ++ v+l++++  l++++++f++l   ++  +ea++  +++++ +++ ++ ++ g + ++++   y++li v+++t ++ +l+
      CCG91481.1 279 FVDLTEL---TKSFLPVFLLFILQQLSKFISIFPFLV-KRKKVQEAAYTTLLMSTGLTFNVICCLYGLSHEIISPRQYSILIPVIITTAIIPTLV 369
                     *******...9***********************874.569*************************************************66555 PP

                     H CS
  Na_H_Exchanger 375 l 375
                      
      CCG91481.1 370 A 370
                     4 PP

>> Transgly_assoc  Transglycosylase associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   4.7   2.5e-05      0.22       1      40 [.      34      71 ..      34      76 .. 0.83
   2 ?    0.8   1.2     0.067     6e+02      10      39 ..     168     193 ..     167     195 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.5e-05
  Transgly_assoc  1 IilGivGAfvGgfllgllgigvgggelaslivaiiGAiIL 40
                    Ii+Gi G  +++fl+g+ g++ ++g++a    a +GAi L
      CCG91481.1 34 IIIGIFGQYLATFLFGKTGLNPKEGWIAF--LAGLGAIML 71
                    9*******************778788774..566777766 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.067
  Transgly_assoc  10 vGgfllgllgigvgggelaslivaiiGAiI 39 
                     + gfl+  +g+  ++  l + +  +iGA I
      CCG91481.1 168 LLGFLFAPFGW--KTVVLTGCV--LIGALI 193
                     56899999999..444554443..455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2624.60
//
Query:       CCG91482.1  [L=145]
Description: D-tyrosyl-tRNA(Tyr) deacylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-48  163.0   0.0      7e-48  162.8   0.0    1.0  1  Tyr_Deacylase  D-Tyr-tRNA(Tyr) deacylase


Domain annotation for each model (and alignments):
>> Tyr_Deacylase  D-Tyr-tRNA(Tyr) deacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.8   0.0   3.9e-52     7e-48       3     143 ..       4     143 ..       3     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 162.8 bits;  conditional E-value: 3.9e-52
                    EEEEEEEEEEEETTEEEEEESSEEEEEEE-BTT--HHHHHHHHHHHHH-EEEEETTSSEEEETTTTT-EEEEEE-GGGGSBTSSSSS-BGTTB--H CS
  Tyr_Deacylase   3 viqrvksAsvtvegevvgsigkGllvlvgvekedteedleklakkilnlrifedeegkmnlsvkdvggevLvVsqftLyadtrkGrrpsfhkaakp 98 
                    +iqrvk+A+v++e+++v+sig+G+l++++veked+e +++++++kil++rif+de+gkmn+s+ d++ge+L+V++ftL++++ kG+rp fh+aa+p
     CCG91482.1   4 LIQRVKEAAVRIEDRLVSSIGRGILLFLAVEKEDDEIKADQMIDKILRCRIFPDENGKMNRSLLDINGELLIVPEFTLAGEFLKGKRPTFHHAAPP 99 
                    69********************************************************************************************** PP

                    HHHHHHHHHHHHHHHHCTCTTEEE--TTS-EEEEEEEEEEEEEEE CS
  Tyr_Deacylase  99 eeaeelyekfveklrerlgekvetGeFgadmkvslvndGPvtill 143
                    ee+++l++++ve++++++g  v++G Fga+m v l n+GPv +++
     CCG91482.1 100 EEGKKLFDYLVERAKSKHG-LVKKGCFGANMTVYLINEGPVSFWI 143
                    ***************9866.9*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1016.35
//
Query:       CCG91483.1  [L=241]
Description: ABC-type multidrug transport system, ATPase component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-24   87.3   0.0      2e-24   86.6   0.0    1.3  1  ABC_tran     ABC transporter
    4.1e-12   46.5   4.0    4.2e-07   30.1   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    7.1e-05   22.7   0.0       0.19   11.4   0.1    2.1  2  AAA_15       AAA ATPase domain
     0.0011   18.5   0.1       0.16   11.4   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
      0.003   18.1   0.3      0.005   17.4   0.3    1.4  1  AAA_23       AAA domain
     0.0083   15.8   0.1      0.015   15.0   0.1    1.3  1  AAA_29       P-loop containing region of AAA domain
  ------ inclusion threshold ------
       0.08   12.8   0.1       0.15   12.0   0.1    1.4  1  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0   7.9e-28     2e-24       2     137 .]      22     163 ..      21     163 .. 0.87

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 7.9e-28
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlkeqeleslrkeigvlpqepqlfpeltvren...........esdeeieka 88 
                 +++s+++ e+e+v+++G nGaGK+tL+ ll+gll+p +G i++    +++   +++  + + + +   +l ++ltvren           e + +i+ +
  CCG91483.1  22 DQISFSIMESEIVGFLGANGAGKTTLIYLLLGLLTPSSGIIRIFgFCPISA--RNEILSFSNFASGYISLPSNLTVRENllvfarlyrvkEPELKIDFL 118
                 89***************************************9983445555..33333444444444789999***********99998888888**** PP

                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 l+ l++++l+++v       LS G+  rv+l++all++pkll+lDEpta
  CCG91483.1 119 LDLLEITHLQHKVT----GFLSAGELTRVCLCKALLNDPKLLFLDEPTA 163
                 ********999999....*****************************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   3.6   5.4e-06     0.014       2      25 ..      34      57 ..      33     127 .. 0.73
   2 !   30.1   0.0   1.7e-10   4.2e-07     238     298 ..     136     194 ..      90     198 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.4e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl 25
                 ++ G+Ng+GK++L+++l +l   
  CCG91483.1 34 VGFLGANGAGKTTLIYLLLGLLTP 57
                6789**************999642 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 1.7e-10
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 S G +   +l  all ++   +ll++DEp +gL+P++  ++ ell el++  g+ +i t+H+
  CCG91483.1 136 SAGELTRVCLCKALLNDP---KLLFLDEPTAGLDPSIADKVCELLLELRKkSGVTIIYTSHN 194
                 666666668888999988...9***********************77777799********8 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   7.3e-05      0.19      23      50 ..      32      58 ..       5     129 .. 0.74
   2 !    9.4   0.0   0.00029      0.75     322     365 ..     151     194 ..     145     196 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.3e-05
      AAA_15 23 eeltvliGkNnsGKSsilealdlFlnnk 50
                e +  + G+N++GK++++++l  +l+ +
  CCG91483.1 32 E-IVGFLGANGAGKTTLIYLLLGLLTPS 58
                2.88899**************9999877 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00029
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                 +++++l+++EP a L p+    + +ll+el +++   +i+t+H+
  CCG91483.1 151 NDPKLLFLDEPTAGLDPSIADKVCELLLELRKKSGVTIIYTSHN 194
                 5789***************************************8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0041        11      23      44 ..      30      51 ..       6      63 .. 0.79
   2 !   11.4   0.0   6.3e-05      0.16     137     208 ..     135     202 ..      88     214 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0041
                TSSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 23 sksftaivGpNGSGKsnlldAi 44
                ++++   +G+NG+GK+ l+  +
  CCG91483.1 30 ESEIVGFLGANGAGKTTLIYLL 51
                45566778********998755 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 6.3e-05
                 S-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 137 LSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadkl 208
                 LS Ge t   + L  A+   +   l +lDe  a LD +   kv+ell e +k++ + +i  +++m    + +
  CCG91483.1 135 LSAGELT--RVCLCKALL--NDPKLLFLDEPTAGLDPSIADKVCELLLELRKKSGVTIIYTSHNMRDVERLC 202
                 5666533..334444433..33347789*************************9998888777776554444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.3     2e-06     0.005      14      43 ..      23      55 ..       6      83 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2e-06
      AAA_23 14 eidF...skgltlItGpNGaGKTTildAiklaL 43
                +i F   ++ ++ + G NGaGKTT++  +   L
  CCG91483.1 23 QISFsimESEIVGFLGANGAGKTTLIYLLLGLL 55
                4788889999***************98776665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   5.8e-06     0.015      17      50 ..      26      59 ..      19      63 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.8e-06
      AAA_29 17 ieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                ++i +++++ + G++G+GK+Tl+  +  lL+p++
  CCG91483.1 26 FSIMESEIVGFLGANGAGKTTLIYLLLGLLTPSS 59
                55555668889************99999999976 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.7e-05      0.15      89     121 ..      20      53 ..       3      63 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.7e-05
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallp 121
                  ++++++  + + +++ ++G  G+GK+tLi  ll+
   CCG91483.1  20 AIDQISFSIMEsEIVGFLGANGAGKTTLIYLLLG 53 
                  5677777666659999*************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1792.59
//
Query:       CCG91484.1  [L=263]
Description: ABC-type multidrug transport system, permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-07   30.3  24.1    2.6e-07   30.3  24.1    1.7  2  ABC2_membrane    ABC-2 type transporter
  ------ inclusion threshold ------
       0.13   11.3  26.2       0.16   11.0  26.2    1.1  1  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3  24.1   2.9e-11   2.6e-07      16     208 ..      19     216 ..       5     217 .. 0.80
   2 ?   -1.7   0.2      0.18   1.6e+03      71      78 ..     237     244 ..     222     259 .. 0.41

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 2.9e-11
  ABC2_membrane  16 rdpslgllwrliqplllalvfgtvfgnlgnsedglnr..pgllffsvlf...lafsaltsvapvferergvlerelvsplyslsayvlakvlvelp 106
                    r++ + +l  ++ p++ +lv g++   l n e+ ++r  + l++ ++l+   + +++ ++v+++ ++  ++l  +lv+p+ +  ++++a +lv + 
     CCG91484.1  19 RSW-IRVLEFVFWPVMDLLVWGYLTLFLSNAEKSFSRpfQFLIGAMILWdvlYRTQLGITVSFLEDVWSKNLINLLVTPI-TIQEFFTAIFLVGIF 112
                    333.3324444445555555555555555666666666755555555551114447788888999999************.*************** PP

  ABC2_membrane 107 vsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlqwiaylnPlty 200
                     sll+  ++ +++ ++ +++l+   f l++l+  l+++ + +  l is l++  + a  la ++ +++  ++ +f+p+  +pkw+q ++ l P t+
     CCG91484.1 113 KSLLILGLLGFLAALFYHFHLTqiGFYLLPLIGNLFLMGSACGVLTISLLLRWGQAAESLAWAIPILFQPFAAVFYPLYVLPKWIQPLSFLVPATH 208
                    ***********999999*****9777888888888888888888999999********************************************** PP

  ABC2_membrane 201 avealrsn 208
                    ++e+lr++
     CCG91484.1 209 VFEGLRGG 216
                    ******86 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.18
  ABC2_membrane  71 vapvfere 78 
                    ++++f+  
     CCG91484.1 237 LGFSFFLF 244
                    22222222 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  26.2   1.8e-05      0.16     166     339 ..      63     244 ..      39     249 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.8e-05
  ABC2_membrane_3 166 liliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilll...afglgipfgnlglll..llfllfglayia 254
                      +il+ +++ t + i+vs++e+  s+ +  +lv++++  +++++ +l   +++ll+l l+ +l   +++  ++ +++g+ l  l   lf++ +++
       CCG91484.1  63 MILWDVLYRTQLGITVSFLEDVWSKNLINLLVTPITIQEFFTAIFLVGIFKSLLILGLLGFLaalFYH--FHLTQIGFYLlpLIGNLFLMGSAC 154
                      555555555556666677777777777778899999999****************9988875543555..777777664446555556666666 PP

  ABC2_membrane_3 255 lgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapglgllrlitgdplwe.....illsliilalfavvy 339
                       ++ +s l +   +a +l++++ +l+  f ++++pl  lp++++ +++++P +++++gl   ++g++ ++     ++l++ +l  +++++
       CCG91484.1 155 GVLTISLLLRWGQAAESLAWAIPILFQPFAAVFYPLYVLPKWIQPLSFLVPATHVFEGLRGGLQGTYSYShlfwaTFLNCCYLGFSFFLF 244
                      6667777777777777777777788888888888888899*******************9999666444456555889999998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1586.57
//
Query:       CCG91485.1  [L=74]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0096   16.2   0.2      0.011   16.0   0.2    1.1  1  2TM             2TM domain
  ------ inclusion threshold ------
      0.013   14.6   0.0      0.013   14.6   0.0    1.0  1  ArsP_1          Predicted permease
      0.035   14.0   0.1      0.039   13.8   0.1    1.1  1  DUF5531         Family of unknown function (DUF5531)
       0.11   11.5   2.7       0.13   11.3   2.7    1.2  1  DUF819          Protein of unknown function (DUF819)
       0.18   11.8   0.2        0.2   11.7   0.2    1.0  1  Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis 
        3.3    7.7   5.1        2.9    7.8   3.9    1.6  1  COX8            Cytochrome oxidase c subunit VIII
        7.9    6.8   6.3         21    5.4   0.7    2.3  2  DUF2951         Protein of unknown function (DUF2951)


Domain annotation for each model (and alignments):
>> 2TM  2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   4.4e-06     0.011      19      73 ..       8      55 ..       2      58 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.4e-06
         2TM 19 vYlivni.flilinlgsswflwpilfWgiglllhalkvFgtekffgkeWeerkiek 73
                 +l+ +i  l+++      ++  +lf g +l+l ++ vF  + f+g++  e+ki++
  CCG91485.1  8 AFLVSSIgTLVGF------IVLFLLFGGWILALVGATVF--SSFLGANPSEKKIKE 55
                3444444333333......34467889999999******..69***********98 PP

>> ArsP_1  Predicted permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.2e-06     0.013      96     152 ..       3      61 ..       1      74 [] 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.2e-06
                 xxxxxxxxxxxxxx..xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      ArsP_1  96 iniiaiiltlillg..wqllvar.ivlalivaiviglvleylfkeeelekaarevaeagl 152
                 in i+++l+ + +g  ++++v+  + +++i+a+v + v++  + ++  ek+ +e++++ l
  CCG91485.1   3 INDIIAFLVSS-IGtlVGFIVLFlLFGGWILALVGATVFSSFLGANPSEKKIKEQKKEPL 61 
                 66666655544.3436666555405678******************99999999987544 PP

>> DUF5531  Family of unknown function (DUF5531)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.5e-05     0.039      12      43 ..       3      34 ..       2      67 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
     DUF5531 12 iGavvawlisykpalfgflllllllsnwlvkr 43
                i  ++a+l+s   +l gf++l+ll+  w++  
  CCG91485.1  3 INDIIAFLVSSIGTLVGFIVLFLLFGGWILAL 34
                5679************************8654 PP

>> DUF819  Protein of unknown function (DUF819)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.7   4.9e-05      0.13      85     107 ..       6      28 ..       4      47 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.9e-05
      DUF819  85 llifLiasvsivlGtvlaflllk 107
                 +++fL++s+++++G+++ fll+ 
  CCG91485.1   6 IIAFLVSSIGTLVGFIVLFLLFG 28 
                 689*****************985 PP

>> Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   7.8e-05       0.2       2      49 ..       7      58 ..       6      70 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.8e-05
  Halogen_Hydrol  2 lgwllsiliavivalvsffllgfsfflallia.ilggilvyvasr....knkk 49
                    +++l+s+++++ v+++++fll   ++lal+ a +++ +l   +s     ++kk
      CCG91485.1  7 IAFLVSSIGTL-VGFIVLFLLFGGWILALVGAtVFSSFLGANPSEkkikEQKK 58
                    55566666666.66666666666677774444444444444444433323333 PP

>> COX8  Cytochrome oxidase c subunit VIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.9    0.0011       2.9      18      35 ..      16      33 ..       7      35 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
                HHHHHHHHHHHHHHHHHH CS
        COX8 18 glsvffvtfLlPaGWvLs 35
                 l+ f+v fLl  GW+L+
  CCG91485.1 16 TLVGFIVLFLLFGGWILA 33
                5899************96 PP

>> DUF2951  Protein of unknown function (DUF2951)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.7    0.0083        21      68      92 ..       2      26 ..       1      28 [. 0.91
   2 ?    4.9   0.2     0.012        31      75      88 ..      30      44 ..      27      49 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0083
     DUF2951 68 nirdikmwvlglvgtilsslviall 92
                ni di  +++  +gt+++ +v+ ll
  CCG91485.1  2 NINDIIAFLVSSIGTLVGFIVLFLL 26
                9*****************9998876 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.012
     DUF2951 75 wvlglvg.tilsslv 88
                w+l lvg t++ss++
  CCG91485.1 30 WILALVGaTVFSSFL 44
                ******978999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       898  (0.0500865); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 535.02
//
Query:       CCG91486.1  [L=187]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-35  122.7   2.8    1.5e-35  122.7   2.8    2.2  2  DUF4337   Domain of unknown function (DUF4337)
     0.0071   16.9   3.2      0.011   16.2   3.2    1.5  1  APG6_N    Apg6 coiled-coil region
  ------ inclusion threshold ------
        1.4    9.1   7.7      0.094   12.8   2.1    1.9  2  DUF3847   Protein of unknown function (DUF3847)


Domain annotation for each model (and alignments):
>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.5      0.15   9.2e+02      94     117 ..       4      27 ..       2      30 .. 0.87
   2 !  122.7   2.8   2.5e-39   1.5e-35       3     161 .]      30     185 ..      28     185 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.15
     DUF4337  94 keikkkAkeleaerdeaneasdkf 117
                 k i++kA+e+ +er e +++++k+
  CCG91486.1   4 KSIEEKANEIINERLEEDRKKEKW 27 
                 789999999999999999999997 PP

  == domain 2  score: 122.7 bits;  conditional E-value: 2.5e-39
     DUF4337   3 kvAlliailAvllAisslkggnaqteaila.......qaeasdqWafYQAksikehlaeleleqlelllkakaeelaaavdkkiakykkkiarykkekk 94 
                 +v+++i ++Avl++i++  ++n +teai+        q +a+d+W+f+QAks++e+ +++                 a++ + + +++++ +ry+kek 
  CCG91486.1  30 HVSFSIILMAVLGTIVTADSENSVTEAIILrneavlyQDKATDMWNFFQAKSMRETGYRI-----------------ANILNPRPEFEQELKRYQKEKI 111
                 799***************************9*****************************.................67888999************** PP

     DUF4337  95 eikkkAkeleaerdeaneasdk.......fdlasalLqiaIvlaaialltkkklllylslvlglvGlvlflagf 161
                 ei++kAk+l++ ++e  +as++       f ++ +l+q++I+l+++++l+kkk+++yl++ l++ Glv+f+ +f
  CCG91486.1 112 EIEQKAKRLDEIVEERVKASERyyrkhhiFRMSGILVQVGIALSSVSALMKKKVVWYLAISLATGGLVVFITAF 185
                 ***********************************************************************997 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   3.2   1.9e-06     0.011      44     110 ..      63     143 ..       2     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.9e-06
      APG6_N  44 k..............qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelql 110
                 +              q ++++e+  +++++ + + e ++eLk+ +ke+ e+e++ + l e  e++ +  er+ r+++ +++
  CCG91486.1  63 AvlyqdkatdmwnffQAKSMRETGYRIANILNPRPEFEQELKRYQKEKIEIEQKAKRLDEIVEERVKASERYYRKHHIFRM 143
                 055555555566777788889999999*************************************************99887 PP

>> DUF3847  Protein of unknown function (DUF3847)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       1.2   7.2e+03      24      34 ..      12      22 ..       4      28 .. 0.48
   2 ?   12.8   2.1   1.6e-05     0.094       9      49 ..     108     147 ..      98     163 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.2
     DUF3847 24 kiLenrlkyle 34
                +i++ rl +  
  CCG91486.1 12 EIINERLEEDR 22
                44444443332 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.6e-05
     DUF3847   9 lekaekklrq.aehkekiLenrlkyleRkeRtHrLitrGaal 49 
                 +ek   +++q a++  +i e r+k  eR  R H+++ +++ l
  CCG91486.1 108 KEK--IEIEQkAKRLDEIVEERVKASERYYRKHHIFRMSGIL 147
                 333..33444155557899*******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1744  (0.0972726); expected 358.6 (0.02)
Passed bias filter:                      743  (0.0414412); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1413.85
//
Query:       CCG91487.1  [L=474]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-12   44.7   0.0    1.6e-11   43.8   0.0    1.5  1  GYF_2     GYF domain 2


Domain annotation for each model (and alignments):
>> GYF_2  GYF domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   9.1e-16   1.6e-11       2      46 ..       6      50 ..       6      53 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 9.1e-16
       GYF_2  2 yyadngqqqGPfsleeLkelaasgeitpdtlVWreGmddWkpase 46
                y+++ g+++GPfs ee+ +l+++g+i+ +tl+W++ + dW p++ 
  CCG91487.1  6 YIVQSGKKEGPFSMEEILQLLEKGTINTQTLAWHKDLKDWEPLGK 50
                89999*************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3511.11
//
Query:       CCG91488.1  [L=72]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00022   21.1   0.0    0.00029   20.8   0.0    1.2  1  DUF4032   Domain of unknown function (DUF4032)


Domain annotation for each model (and alignments):
>> DUF4032  Domain of unknown function (DUF4032)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.6e-08   0.00029     133     159 ..      29      55 ..      13      58 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.6e-08
     DUF4032 133 elLehrwylseeagrdvgleeavesyv 159
                 e+L+h+w  se++g+d+g+e+a+ ++v
  CCG91488.1  29 EILKHKWIESEKKGYDIGFEKALLDWV 55 
                 9***********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 491.72
//
Query:       CCG91489.1  [L=344]
Description: Mrp protein, an ATPase involved in chromosome partitioning [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-97  324.0   0.0    7.1e-97  323.7   0.0    1.1  1  ParA             NUBPL iron-transfer P-loop NTPase
    4.5e-15   55.8   0.0    8.1e-15   55.0   0.0    1.4  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
    1.1e-09   38.5   0.1    6.1e-08   32.8   0.1    2.3  1  AAA_31           AAA domain
      7e-09   35.7   0.1    1.9e-08   34.3   0.0    1.8  2  FeS_assembly_P   Iron-sulfur cluster assembly protein
      4e-07   29.8   0.0    0.00011   21.7   0.1    2.3  2  Fer4_NifH        4Fe-4S iron sulfur cluster binding proteins,
      5e-06   26.0   0.0    9.7e-06   25.0   0.0    1.5  1  MipZ             ATPase MipZ
    2.7e-05   23.5   0.7     0.0022   17.2   0.1    2.7  2  ArsA_ATPase      Anion-transporting ATPase
      0.002   17.6   0.1      0.044   13.2   0.0    2.2  2  CBP_BcsQ         Cellulose biosynthesis protein BcsQ
  ------ inclusion threshold ------
      0.044   13.4   0.0      0.081   12.5   0.0    1.3  1  SRP54            SRP54-type protein, GTPase domain
      0.055   13.3   0.6        3.4    7.5   0.1    2.5  2  AAA_26           AAA domain
      0.065   12.8   0.0       0.11   12.1   0.0    1.3  1  AAA_25           AAA domain
       0.12   11.7   0.0       0.18   11.1   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
       0.15   11.2   0.0       0.25   10.5   0.0    1.3  1  NB-ARC           NB-ARC domain


Domain annotation for each model (and alignments):
>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.7   0.0  5.1e-100   7.1e-97       1     245 [.      96     339 ..      96     340 .. 0.98

  Alignments for each domain:
  == domain 1  score: 323.7 bits;  conditional E-value: 5.1e-100
        ParA   1 kvkkviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeekpeqs.ekkliPveakgikvmSigfllesedeavvwrGpmksk 98 
                 ++k++iav+SgKGGVGKStva+nlA+a++k g++vgl D DiyGpsi  ++g+ e+ p+ s ++kliP+e +g+k+mS+gflle +d++ v rGp++++
  CCG91489.1  96 EIKHIIAVASGKGGVGKSTVAANLACAFHKIGFHVGLCDCDIYGPSISMMFGTVES-PQISvDEKLIPIERYGLKLMSMGFLLE-SDQPAVLRGPLVTR 192
                 59**************************************************9997.55554889*******************.9************* PP

        ParA  99 aikqllkdvewgelDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteifgkgggekl 197
                   +++lk+v+wg+lD+L++DlPPGtgD+qlt++q+++l+gaviVttpqeval d++ka++mfkkv+v++lG++eNms+f cp+ ++k+++fg+ggg++ 
  CCG91489.1 193 YTQEFLKNVDWGNLDFLVLDLPPGTGDIQLTIVQTVRLSGAVIVTTPQEVALVDARKAVSMFKKVNVPILGILENMSYFLCPSDNKKYDLFGSGGGKRE 291
                 *************************************************************************************************** PP

        ParA 198 aeelgvpllgeipldpeireasdegkplvlkepeseaakaleeiaekv 245
                 ae+l+vp+lgeip++ e+r +sd+g p+vl++p+ ++++++ e a+k+
  CCG91489.1 292 AEKLNVPFLGEIPIEAELRISSDHGMPIVLSDPDRQTSTVFLEAAKKI 339
                 *******************************************99998 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   5.8e-18   8.1e-15       1     128 []     101     319 ..     101     319 .. 0.93

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 5.8e-18
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 ia+as+kGGvGK+t+aanLa+a+ + g++V l D+D  +++ ++ +g+++  +                                              
  CCG91489.1 101 IAVASGKGGVGKSTVAANLACAFHKIGFHVGLCDCDIYGPSISMMFGTVESPQIsvdeklipieryglklmsmgfllesdqpavlrgplvtrytqeflk 199
                 89******************************************999999999999******************************************* PP

                 ..............................................CCHCCCHHHHHHCHCHHHH....EEEEEEEEESS...-TTCHHHHHHHHHHCT CS
                 ..............................................xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ..............................................dlkrllellealgkkkall..lkiagvvlnrvdgeneetllkealeelkqryg 105
                                                               d+ + + +++++  +   l  l+ +++ l   d+++++   + + +++ ++++
  CCG91489.1 200 nvdwgnldflvldlppgtgdiqltivqtvrlsgavivttpqevalvDARKAVSMFKKVNVP--ILgiLENMSYFLCPSDNKKYDLFGSGGGKREAEKLN 296
                 *******************************************999999988888888865..44679999999999999999999999999999999* PP

                 S-EEEEEE--CCHCCCCHHTS-H CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA 106 vpvlgviprdeavaeapargepv 128
                 vp+lg+ip   ++  +  +g+p+
  CCG91489.1 297 VPFLGEIPIEAELRISSDHGMPI 319
                 ********999997777777775 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   4.5e-11   6.1e-08       2      50 ..      99     148 ..      98     265 .. 0.66

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 4.5e-11
      AAA_31   2 kvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQa.nattglgi 50 
                 ++Ia+a  KGGvGK+T + nla+a+ k g +v l+D+D  + + ++ +g+
  CCG91489.1  99 HIIAVASGKGGVGKSTVAANLACAFHKIGFHVGLCDCDIYGpSISMMFGT 148
                 69************************************876233444443 PP

>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.4e-11   1.9e-08       1      73 [.       6      76 ..       6      79 .. 0.93
   2 ?   -3.0   0.0       6.5   8.9e+03      40      56 ..     234     250 ..     225     253 .. 0.70

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.4e-11
                    HHHHHHHHTT-B-TTTSSBCCCCT---EEEE-T-EEEEEE--SSTT-TTHHHHHHHHHHHHC.STT--EEEEE CS
  FeS_assembly_P  1 keavlaaLrtVtDPelgvdlvslglvreidieggkVsvditltypacslaeairadaeaalralpgvevveVe 73
                    ke++l+ Lr+V+ P   +d+vs glv+ei++++ +++++++l +p   + e+++++++a l +l      +++
      CCG91489.1  6 KEEILNQLRKVRYPGFSRDIVSFGLVKEIEMTEESIYIKLELSSPNPDVPEQLEREIKATLSSLTA--ISNIQ 76
                    799****************************************99999**************9999..55554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.5
                     E--SSTT-TTHHHHHHH CS
  FeS_assembly_P  40 itltypacslaeairad 56 
                     + +t+p++ ++ + r++
      CCG91489.1 234 VIVTTPQEVALVDARKA 250
                     56677777766666655 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   8.1e-08   0.00011       6      53 ..     105     152 ..      99     159 .. 0.89
   2 !    5.7   0.0    0.0062       8.5     197     246 ..     292     341 ..     277     344 .] 0.94

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 8.1e-08
   Fer4_NifH   6 yGkGGiGksttsqnlsaalaemgkkvlivGCDPkaDstrlllggkaqe 53 
                  GkGG+Gkst ++nl+ a+++ g +v +  CD    s ++++g+   +
  CCG91489.1 105 SGKGGVGKSTVAANLACAFHKIGFHVGLCDCDIYGPSISMMFGTVESP 152
                 5********************************999999999987766 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0062
   Fer4_NifH 197 aeelgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrelarkile 246
                 ae+l+++ l  +P + ++r ++ + + ++  +p+ + +  + e a+ki++
  CCG91489.1 292 AEKLNVPFLGEIPIEAELRISSDHGMPIVLSDPDRQTSTVFLEAAKKIVD 341
                 799*********************************************87 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   7.1e-09   9.7e-06       1      50 [.      99     148 ..      99     249 .. 0.59

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 7.1e-09
                 EEEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHHHH CS
        MipZ   1 hvivlgnekGGsGksttavhvavaLlkkGarvaaidldlrqrtlarylen 50 
                 h+i ++  kGG Gkst+a  +a a+ k G++v+  d d+   +++  ++ 
  CCG91489.1  99 HIIAVASGKGGVGKSTVAANLACAFHKIGFHVGLCDCDIYGPSISMMFGT 148
                 89************************************988887766654 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.6e-06    0.0022       5      38 ..     103     136 ..      98     164 .. 0.71
   2 ?    3.5   0.1     0.023        32     115     153 ..     196     236 ..     191     272 .. 0.56

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.6e-06
                  EEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase   5 lvgGKGGVGKttvsaatavklsekgkkvllistD 38 
                  + +GKGGVGK+tv+a +a+   + g +v l   D
   CCG91489.1 103 VASGKGGVGKSTVAANLACAFHKIGFHVGLCDCD 136
                  569***************9988888777666665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.023
                  HHHHHHHCSSSSEEEEESBS.CCH.TCGGGGHHHHHHHHHH CS
  ArsA_ATPase 115 ellkyvkeeeydvvvlDtaP.TGh.tlrllslpevleklle 153
                  e+lk v+  + d +vlD +P TG+  l ++++++  ++++ 
   CCG91489.1 196 EFLKNVDWGNLDFLVLDLPPgTGDiQLTIVQTVRLSGAVIV 236
                  67888888888888888888666534555666665555544 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.2e-05     0.044       3      37 ..     100     134 ..      98     148 .. 0.89
   2 ?    2.0   0.0     0.086   1.2e+02     105     142 ..     194     232 ..     163     250 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-05
    CBP_BcsQ   3 vlalqGvRGGvGttsllaaLawalhelgesvlviD 37 
                 ++a+   +GGvG+++++a La a+h+ g +v + D
  CCG91489.1 100 IIAVASGKGGVGKSTVAANLACAFHKIGFHVGLCD 134
                 67777789********************9997777 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.086
    CBP_BcsQ 105 llaalkelk.eqyrwillDlpagasaltrellaladlvl 142
                  +++lk++  ++ ++++lDlp g+ +++ +++++  l+ 
  CCG91489.1 194 TQEFLKNVDwGNLDFLVLDLPPGTGDIQLTIVQTVRLSG 232
                 4566777778999***********999998888765543 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.9e-05     0.081       7      40 ..     105     138 ..      99     142 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.9e-05
                 EESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTS CS
       SRP54   7 vGlqGaGKTttlaKLaallkkegkkvllvaaDtf 40 
                  G  G+GK t +a La  ++k g +v l+ +D++
  CCG91489.1 105 SGKGGVGKSTVAANLACAFHKIGFHVGLCDCDIY 138
                 5889****************************98 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.037        51       3      32 ..     101     130 ..      99     133 .. 0.81
   2 ?    7.5   0.1    0.0024       3.4     131     167 ..     233     273 ..     214     312 .. 0.52

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.037
      AAA_26   3 ifvtgtdtgvGKTvvslgLvralkrkgvkv 32 
                 i v++   gvGK++v++ L+ a+++ g+ v
  CCG91489.1 101 IAVASGKGGVGKSTVAANLACAFHKIGFHV 130
                 66888899************9997655555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0024
      AAA_26 131 vilVargglgtinqllltiealrqknvrvlGvilNk....v 167
                  ++V+++++ ++ ++  +++++++ nv++lG+  N     +
  CCG91489.1 233 AVIVTTPQEVALVDARKAVSMFKKVNVPILGILENMsyflC 273
                 45666666666666666666666666666666666544433 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.9e-05      0.11      32      56 ..      98     122 ..      68     126 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.9e-05
      AAA_25  32 agelallaGapgtGKttlaldlala 56 
                 ++ +a+  G +g+GK+t+a +la+a
  CCG91489.1  98 KHIIAVASGKGGVGKSTVAANLACA 122
                 66788999***************97 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00013      0.18      45      99 ..     204     258 ..     190     281 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                      S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSST CS
  Ubie_methyltran  45 vkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkin 99 
                      +     vlD+  GtgD+ +++ ++v+ +g v+v   +e  L  ++k +    k+n
       CCG91489.1 204 GNLDFLVLDLPPGTGDIQLTIVQTVRLSGAVIVTTPQEVALVDARKAVSMFKKVN 258
                      4445579**********************99998888888888877776655555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00018      0.25      16      43 ..      95     122 ..      85     129 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
                 TTSCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  16 delqslvvalvGmgGvGKttlakqilnk 43 
                  e++ ++   +G+gGvGK+t+a++    
  CCG91489.1  95 SEIKHIIAVASGKGGVGKSTVAANLACA 122
                 67787777889***********997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2356.73
//
Query:       CCG91490.1  [L=213]
Description: Zn-dependent protease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-12   46.8   9.1    9.5e-08   31.6   2.3    2.7  2  Peptidase_M50   Peptidase family M50
  ------ inclusion threshold ------
       0.02   14.5   7.7       0.12   12.0   0.0    2.4  2  Peptidase_M50B  Peptidase M50B-like


Domain annotation for each model (and alignments):
>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   2.3   1.1e-11   9.5e-08       2     108 ..      10     115 ..       9     123 .. 0.82
   2 !   18.3   0.7   1.2e-07    0.0011     186     225 ..     124     163 ..     116     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.1e-11
                    XXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50   2 filllgilvvvHElGHflvAklcgvkv..eefsigfGpkllsfkkget....eYaiallpLGGyVkmageepeeelseeeakaflkkspwqrlliv 91 
                    ++lll+ l+++HE++H++vA l+g +   +e  + f   l+++   +t      +i llp GG+  +a  +p  +     +  +lk++ +q +li+
     CCG91490.1  10 LFLLLIPLITIHEFAHAMVATLMGDRTprDEGRLTF-NPLVHMDLFGTliipAINIFLLP-GGFGFFAWGRPVPT-----NPSLLKNPRLQGILIA 98 
                    6789999*****************998324567888.77778886666233346899999.**999999996655.....6679************ PP

                    XXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxx RF
  Peptidase_M50  92 lAGplanfilailvfvv 108
                    lAGplan+i a++++++
     CCG91490.1  99 LAGPLANIITAFFILLI 115
                    ************99876 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.2e-07
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 186 aglssflqllalisvnLgilNLlPipvLDGghllfallea 225
                    ++ls+++++++l s+ L+++ LlP++++DG  ++++++  
     CCG91490.1 124 HKLSELFATFVLASIFLAVFHLLPVMPFDGWTIIKNIFRI 163
                    56889999**************************999764 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.3e-05      0.12      25      42 ..      18      35 ..       6      38 .. 0.84
   2 ?    2.3   5.3     0.012   1.1e+02      64     149 ..      92     180 ..      87     187 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.3e-05
  Peptidase_M50B 25 vffHElGHalaalLtGgr 42
                    + +HE++Ha++a L+G r
      CCG91490.1 18 ITIHEFAHAMVATLMGDR 35
                    568*************87 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.012
  Peptidase_M50B  64 lgqiltllaGYlgpallGlllillsasgka...rlllvllvllllvllllvrnlfglvlllllgallllvlllaedelleflllflgvf 149
                     l+ il++laG+l+  +   +++l+++  ++   +l+  +++++l++++l v  l++++   ++ ++  ++ + ++ e +  + +f+++ 
      CCG91490.1  92 LQGILIALAGPLANIITAFFILLIAKVVIPqdhKLSELFATFVLASIFLAVFHLLPVMPFDGWTIIKNIFRIPDQWEHQMGIFWFIAIL 180
                     46689999**9999888888888776644442244444666666666776677777666666666555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1541.76
//
Query:       CCG91491.1  [L=415]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.5e-105  351.6   0.0   6.3e-105  351.4   0.0    1.0  1  DUF1343   Protein of unknown function (DUF1343)


Domain annotation for each model (and alignments):
>> DUF1343  Protein of unknown function (DUF1343)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.4   0.0  3.5e-109  6.3e-105       1     353 []      48     412 ..      48     412 .. 0.97

  Alignments for each domain:
  == domain 1  score: 351.4 bits;  conditional E-value: 3.5e-109
                 EEEEE-TT-EETTTEEHHHHHHHTTT-EEEEEEESTT-TTS-----------B-TTT--BEEE-SGGGSS--HHHHTT-SEEEEE----SBTTSTHHHH CS
     DUF1343   1 vglltnqtgvdsegehlvdvLleakkvklvalfapeHGlrgeadagekvkdsvdpktglpvisLYgkkkkptkemLedlDvlvfdiqDvGvRfYTYist 99 
                 +gl+tn ++v+++g ++++++++ ++v+lva+f+pe+Gl+   +++++ ++++dp+t+lpv+ L g++ kpt++mL+++Dvlvfd+qD+G+R +T++st
  CCG91491.1  48 IGLITNLSAVNKNGISTLELFYHCPQVNLVAIFTPEYGLYCMGSDKQNTASYIDPYTNLPVYPLQGETLKPTDDMLANVDVLVFDLQDIGTRSFTFLST 146
                 8************************************************************************************************** PP

                 HHHHHHHHHHTT-EEEEE----TTTTS--BS----GGG-BTTB-SSS-SB----HHHHHHHHHHTT-S....EEEEE--BS--TT--HHHH--S-S-SS CS
     DUF1343 100 layvmeaaaengieliVLDRpNplgglkveGpvldkklesfvgalpipvrhGlTiGElAklingekll....dltvipmkgwkrsmlydetglpwvkPS 194
                 +  +meaa eng+e++VLDRpNplgg++veG   +++++sf + ++ip++hG+T +E+A +inge+++    +lt++pmkgw+r+ml+++tglpw + S
  CCG91491.1 147 MGLAMEAAGENGKEFYVLDRPNPLGGERVEGMPFNNSFRSFYNEWDIPYIHGMTPCEIAGMINGENWIfkkpKLTLVPMKGWQRHMLWKDTGLPWFPLS 245
                 *************************************************************************************************** PP

                 TT--SCCHHHHHHHHHHHHC.TSSB-STTSSSTTSEEEETT-SHHHHHHHHHTT--TTEEEECEEE--SSSTTTTS-EEEEEECES-TTT---TCHHCC CS
     DUF1343 195 PnlptleaallYpglclfEg.tnvseGrGttrpFeviGapwldakklaeelnalklpgvkfrpvsftpteskhkgetceGvqlevtdrekfdpvelgll 292
                 P l + e+ ++++   ++     ++ G Gt+ p++++Ga+ +d+ ++a+++n++k+p ++frpv + p + k++g+t+ G+q++++d +k++ ve+gl 
  CCG91491.1 246 PYLTDEESPFYFAISSFLGLsPVLNNGIGTALPYKLVGAQKIDPFTFARNMNKRKIPFCYFRPVFYWPFFGKFQGKTLGGCQIYIKDFSKVKLVEIGLS 344
                 **********99999999973699*************************************************************************** PP

                 HCHHHHHHHHGG....SHHH.....HHHHHHTSTHHHHHHHCCS-CHHCHHHCHCCHHHHHHHHHCC--S CS
     DUF1343 293 llkallelypeq....felk.....afdkllgteelreqieagksveeiraswqkelekFkkkrkkyllY 353
                 ll+ +++  +++    +  +     +fd+ +gt+e+r+++ +gk+ ++i+++w + le+F++krkkyllY
  CCG91491.1 345 LLQEMMTELNQDplasL--TaeqleFFDRYCGTDEIRKELLSGKRIQAIVDNWIPYLENFREKRKKYLLY 412
                 ***99999986666551..144666********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3096.32
//
Query:       CCG91492.1  [L=117]
Description: Addiction module toxin, RelE/StbE [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.019   15.6   0.0      0.028   15.0   0.0    1.3  1  ParE_toxin  ParE toxin of type II toxin-antitoxin system, par


Domain annotation for each model (and alignments):
>> ParE_toxin  ParE toxin of type II toxin-antitoxin system, parDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.6e-06     0.028       5      84 ..      25      96 ..      21      99 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-06
                HHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHTTTSEE.CTSTCCTTEEEEEECTEEEEEEEETSTTEEEEEEEE CS
  ParE_toxin  5 prAlkdlkkiadyiardgpaakrfldaleealellaenpalgrp.rrelglkglrririgdyriiYriddeelvvvilrvl 84
                ++ ++dl  + + +      + ++ld le  + +++ np++      e + + l+r+r++ yri+++  ++  v+ + r+l
  CCG91492.1 25 HQSQQDLSQLSKAV------QFQILDCLEM-IPEVLSNPHSDCLsKAERDNRILYRFRCKEYRIYFEK-TDYGVL-VQRIL 96
                56778888888877......9999999966.55555566666664667778889*************7.466788.88876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 861.93
//
Query:       CCG91493.1  [L=307]
Description: Malate dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-36  125.4   0.1    2.4e-36  124.9   0.1    1.2  1  Ldh_1_N         lactate/malate dehydrogenase, NAD binding dom
    3.6e-32  111.6   0.0    6.5e-32  110.8   0.0    1.3  1  Ldh_1_C         lactate/malate dehydrogenase, alpha/beta C-te
     0.0054   16.3   0.3      0.019   14.5   0.3    2.0  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   0.1     4e-40   2.4e-36       1     141 []       1     140 [.       1     140 [. 0.98

  Alignments for each domain:
  == domain 1  score: 124.9 bits;  conditional E-value: 4e-40
                 EEEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEEE.SSGGGGTTESEEEE--S-SS-TTTTHHHHHHHHHHHH CS
     Ldh_1_N   1 vkvavvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvkvkvse.keeealkdadvvvitagvprkpGetRddLlkvNakIv 98 
                 +k++v+Ga G++G+++a  + +k+l+d + L Di + + +G+ald+ + +  l v++k+ + +  e+++++d+ vit+g  r+pG++R+dLl++Na+I 
  CCG91493.1   1 MKISVIGA-GFVGATTAQRIWEKNLGD-VFLHDIIEGMPQGKALDMMESAPLLRVESKIVGtNLFEDCANSDIYVITSGLARQPGMSREDLLNRNAEIA 97 
                 69******.******************.************************99999888879************************************ PP

                 HHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHHTS-GGGEEE CS
     Ldh_1_N  99 keiveaiakvapnaivlvvsNPvdiltevlkkasglpkkrvig 141
                 + ++e+ia +++n iv+vvsNPvd+lt+++  +++lpk+rv+g
  CCG91493.1  98 SGVAENIARFSKNPIVIVVSNPVDVLTYLVALKTKLPKNRVMG 140
                 *****************************************98 PP

>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.0   1.1e-35   6.5e-32       2     162 ..     144     303 ..     143     305 .. 0.91

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 1.1e-35
                 HHHHHHHHHHHHHHHTS-GGGEE--EEBSSST....ETTEEHHHH...HTTSTTSTHHHHHHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHHHHHHH CS
     Ldh_1_C   2 tLDivRaktflaekagvtprsvkvtViGgHsg....vtiipllsq...vkellklsekqleeliervqnggdevvkakkGagsatlsmAvAgakfveal 93 
                  LD++R+++f+a + g++p++v+++V+GgH++        p +s    v  +  ls++++e+li+r+++gg+e+v+  k +gsa+++  +A+ ++ve++
  CCG91493.1 144 VLDSARFRYFIASELGIAPQEVQAMVLGGHGDemvpL---PRFSTvsgVSIEHFLSNEKIEQLIKRTRDGGAEIVQLLK-KGSAYYAPSAAILEMVESI 238
                 59******************************65441...4444400045566789********************986.8****************** PP

                 HTTHTEEEEEEEEEESCCCECCSSEEEEEEEEEEETTEEEEE-------HHHHHHHHHHHHHHHHHHHH CS
     Ldh_1_C  94 lrdtkeilsagvyldgevglkdqeieyfsvPvvlgknGvekvleilklndfeeekleksvkeLkkeiek 162
                 ++d k+ l+ ++  +g++g++    +y++vPvvlgknG+ek+le l+l + e  +l++s+    ++i+k
  CCG91493.1 239 VKDQKRLLPCSAWCEGQYGITG---QYVGVPVVLGKNGIEKILE-LPLREDELLALQQSARHVASNIKK 303
                 **********************...6******************.*********************998 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.3   3.2e-06     0.019       1      31 [.       1      32 [.       1     136 [. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.2e-06
                    SEEEEE--STTHHHHHHHHHHCT.SEEEEE-S CS
  UDPG_MGDP_dh_N  1 mkisviGlGYvGlvtaavlaeig.hevigvDi 31
                    mkisviG+G+vG++ta  + e+   +v + Di
      CCG91493.1  1 MKISVIGAGFVGATTAQRIWEKNlGDVFLHDI 32
                    8***************9987776456666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2216.15
//
Query:       CCG91494.1  [L=390]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.082   13.2   0.1       0.19   12.0   0.1    1.6  1  DUF2501   Protein of unknown function (DUF2501)


Domain annotation for each model (and alignments):
>> DUF2501  Protein of unknown function (DUF2501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     1e-05      0.19      14      54 ..     305     345 ..     301     358 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1e-05
     DUF2501  14 kdqLlgklglqtaeaekdsdYqqGlqGlLktsngkqvnLss 54 
                 k+++ +k  l+  +  +d +Y++G q lL+t++g+ + Ls 
  CCG91494.1 305 KQKVSSKAALNLGTDFQDCNYTAGSQSLLDTDQGSRLFLSI 345
                 7788899999999999*******************998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2823.08
//
Query:       CCG91495.1  [L=135]
Description: Predicted membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-19   68.4   2.1    6.2e-18   65.0   0.2    2.1  2  DUF202    Domain of unknown function (DUF202)
  ------ inclusion threshold ------
       0.17   11.5   0.6       0.33   10.5   0.2    1.7  2  DUF2370   Protein of unknown function (DUF2370)


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.2   6.9e-22   6.2e-18       2      66 ..       7      88 ..       6      90 .. 0.84
   2 ?    3.2   0.1     0.013   1.2e+02      12      32 ..     102     122 ..     100     132 .. 0.70

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 6.9e-22
      DUF202  2 dglAnERTfLaWlRtslalialglallrffl...........tgepsa......lgkilglilivlgiltllvglvrylrrq 66
                d+ AnERT+LaW+Rt++a++a+g+++ +f l           ++++++      + +++g++++ +g++t++v+ +r++ ++
  CCG91495.1  7 DHSANERTYLAWIRTGIAIMAFGFLIEKFTLfldyirvmfdnKNHHADsrffdpVVQWMGFAFMSIGVFTIFVASIRFYINA 88
                899*************************98888*****999844444433333346*********************98766 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.013
      DUF202  12 aWlRtslalialglallrffl 32 
                 aW+ t l+l++  ++l+  fl
  CCG91495.1 102 AWVNTFLGLLIGLAGLVLAFL 122
                 788888888777777665554 PP

>> DUF2370  Protein of unknown function (DUF2370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0     0.093   8.3e+02     192     214 ..      22      45 ..       4      56 .. 0.66
   2 ?   10.5   0.2   3.7e-05      0.33     186     219 ..      60      94 ..      39     101 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.093
     DUF2370 192 ayvlmilGlfil.iksvvdylrvk 214
                  +++m++G++i   + ++dy+rv 
  CCG91495.1  22 GIAIMAFGFLIEkFTLFLDYIRVM 45 
                 356788888774255677888875 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 3.7e-05
     DUF2370 186 sssewlayvlmilGlf.iliksvvdylrvkrlekk 219
                    +w+ +++m +G+f i + s+  y+++k+++++
  CCG91495.1  60 PVVQWMGFAFMSIGVFtIFVASIRFYINAKQIDSN 94 
                 6689**********9857899*********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 995.28
//
Query:       CCG91496.1  [L=387]
Description: Aspartate/tyrosine/aromatic aminotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-76  255.9   0.0    7.1e-76  255.7   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    5.1e-09   35.9   0.0    8.6e-09   35.2   0.0    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    1.3e-06   27.7   0.0    0.00073   18.6   0.0    2.1  2  Aminotran_5      Aminotransferase class-V
    1.4e-06   27.1   0.0    2.3e-06   26.4   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
      0.035   12.8   0.0       0.35    9.6   0.0    2.0  2  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.7   0.0     2e-79   7.1e-76       2     362 ..      31     379 ..      30     380 .. 0.97

  Alignments for each domain:
  == domain 1  score: 255.7 bits;  conditional E-value: 2e-79
                    EEEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEE CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeil 97 
                    d++n++s+e+++d    t+++++ a+    +   ++++y+p+ g pel+ a+++ l+++++l++ +e ++ v+ Ga+++   +i ++ ++pgde++
     CCG91496.1  31 DIVNFTSGEPDFD----TPEHIKAAAMG--SLDANFTRYTPSSGIPELRLAICEKLKKDNALDYSPE-QINVSCGAKHACINVILAT-VDPGDEVI 118
                    799**********....99999888887..88899********************************.*******************.9******* PP

                    EEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTC CS
  Aminotran_1_2  98 vpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagf 193
                    +p+p++ sy ++++++g+e v +p++ e++++++ +++eea +       ktk+i+++sp+NPtG+++++eele ++++a +  +l+++De+Y+++
     CCG91496.1 119 IPAPYWVSYPEMVKIAGAEPVIVPTSFENGYKITPKQFEEAMTP------KTKMIIINSPSNPTGSIYSKEELEGIANVALEEDILILSDEIYEKL 208
                    *******************************************9......********************************************** PP

                    BSSSSHTHHHHGGSTTSTT..EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 194 vfgsldavatranveeepn..llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrr 285
                    v+++l + + +a +++e+   +++v+++sK ++++G+R+Gy ++  + ++q+++l+++++s  +s +q+ ++aa + +++    +e+m+++++krr
     CCG91496.1 209 VYDDLTHFS-IASLSKEVYelTFTVNGFSKTYAMTGWRLGYSASPLWAAKQIASLQSHMTSnpTSFAQKGALAAYKGPQD---CVENMVEEYKKRR 300
                    ***998888.9999999999******************************************99**************97...9************ PP

                    HHHHHHHHHS.TEEEECCSCSSEEEEEETHH..CHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHH CS
  Aminotran_1_2 286 kelrdeLael.glkvlasqsgmflltdlsae..takelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelvea 362
                     ++ + L ++  ++++++q++++ ++ +s+   + +++++kLlee++v+v+pg  f+  +++R+++ +++ e ++  +++
     CCG91496.1 301 AYIMKILSDIeKISFVPPQGTFYIYVNISKTgmSSSDFAQKLLEEEKVAVVPGVAFGDDQSIRLSY-ATSMERIKTGLDR 379
                    *******999***********************9************************999*****.9999999888776 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   2.4e-12   8.6e-09      42     117 ..      93     169 ..      75     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 2.4e-12
                      EEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-.TTTSSB-GGGCGGG--TTEEEEEE CS
  DegT_DnrJ_EryC1  42 iavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvd.pdtynidpaaieaaitertkaIlp 117
                      i vs G +   +      v+pgdeVI+p+  +v+  ++v  +ga+pv v    ++ y i+p++ e+a t++tk I++
       CCG91496.1  93 INVSCGAKHACINVILATVDPGDEVIIPAPYWVSYPEMVKIAGAEPVIVPTSfENGYKITPKQFEEAMTPKTKMIII 169
                      5566666666666666899******************************98736789******************96 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     2e-07   0.00073      64     175 ..      92     202 ..      78     204 .. 0.74
   2 !    7.0   0.0   0.00068       2.4     273     339 ..     289     354 ..     262     376 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2e-07
                  EEEESSHHH.HHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB...-- CS
  Aminotran_5  64 iiftsGtte.ainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGti...qp 157
                   i++s++++ a    ++ ++++++pgde+++ +    +    ++++a      ++  +++++ +++++++e+++++ktk+++i+  sn tG i   ++
   CCG91496.1  92 QINVSCGAKhA---CINVILATVDPGDEVIIPAPYWVSYP-EMVKIAG-AEPVIVPTSFENGYKITPKQFEEAMTPKTKMIIINSPSNPTGSIyskEE 184
                  56677666433...3333333389****999877666655.5666663.34557788999999****************************9833356 PP

                  HHHHHHHHHHTT-EEEEE CS
  Aminotran_5 158 veeigklakkkgalvlvD 175
                  +e i+++a ++++l+l D
   CCG91496.1 185 LEGIANVALEEDILILSD 202
                  777788888888888777 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00068
                  HHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHT.TEEEEEE- CS
  Aminotran_5 273 leaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdee.gIavrsGh 339
                  +e++ ++ k+ ++y+++ l++++++ + +  ++      v+++ +g++++d+a+ L ee ++av  G 
   CCG91496.1 289 VENMVEEYKKRRAYIMKILSDIEKISF-V-PPQGTFYIYVNISKTGMSSSDFAQKLLEEeKVAVVPGV 354
                  68888999999****************.4.46889999999**********998766666***98875 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   6.3e-10   2.3e-06      64     174 ..      86     203 ..      79     209 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 6.3e-10
                      HHT-SEEEEESSHH.HHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHH.TTCEEEEEST..TSHHHHHHHCCTTEEEEEEESS-TTTT-- CS
  Cys_Met_Meta_PP  64 LeggeaalavssGm.aAiaaailallkaGdeivvsddlYggtqrllkkvlkk.lgievkfvdt..sdleelekaikentklvylEtptnpllkv 153
                      L+ + + + vs+G   A  ++ila +  Gde+++    + +  +++k    + + + ++f +     ++++e+a++++tk++ + +p+np+ ++
       CCG91496.1  86 LDYSPEQINVSCGAkHACINVILATVDPGDEVIIPAPYWVSYPEMVKIAGAEpVIVPTSFENGykITPKQFEEAMTPKTKMIIINSPSNPTGSI 179
                      5556667788999635778******************99999999999988736666667776445689*********************9887 PP

                      -...-HHHHHHHHHHTT-EEEEEG CS
  Cys_Met_Meta_PP 154 v...DiekiaklakkagvlvvvDn 174
                           +e ia++a ++++l++ D 
       CCG91496.1 180 YskeELEGIANVALEEDILILSDE 203
                      533378999999999999988776 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   9.6e-05      0.35      90     146 ..      98     155 ..      89     178 .. 0.84
   2 ?    0.9   0.0     0.041   1.5e+02      74     162 ..     254     344 ..     248     354 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 9.6e-05
                 HHHHHHHHHHHHH--TTEEEEEESS--HHHHHHHHHS-EEEEEE--E.B-TTS-BE-- CS
    OKR_DC_1  90 GTsssnkvvlnavltpgdlvlvdRNcHKSiehalvlsgatPvylepe.rnalgiiggi 146
                 G   +   v+ a++ pgd v+++     S  + + ++ga+Pv + ++ +n + i+ + 
  CCG91496.1  98 GAKHACINVILATVDPGDEVIIPAPYWVSYPEMVKIAGAEPVIVPTSfENGYKITPKQ 155
                 66677778999********************************999999999987554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.041
                 HHHHHCT-SEEEEESSHHHHHHHHHHHHH--TTEEEEEESS--HHHHH..HHHHS-EEEEEE--EB-TTS-BE---GGGGSHHHHHHHHHH CS
    OKR_DC_1  74 yaarvfgadksyfvvnGTsssnkvvlnavltpgdlvlvdRNcHKSieh..alvlsgatPvylepernalgiiggidlkefeeetlkekike 162
                 +aa+   + +s++  n Ts + k  l a   p d v       K        +ls+++ + + p +  + i  +i +  + ++  ++k+ e
  CCG91496.1 254 WAAKQIASLQSHMTSNPTSFAQKGALAAYKGPQDCVENMVEEYKKRRAyiMKILSDIEKISFVPPQGTFYIYVNISKTGMSSSDFAQKLLE 344
                 688888999999*****************99999995444444444441255799999999999999999999999999987776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2591.80
//
Query:       CCG91497.1  [L=389]
Description: Nucleoside diphosphate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-36  125.4   0.1    7.1e-19   68.2   0.0    3.6  3  NDK        Nucleoside diphosphate kinase
  ------ inclusion threshold ------
       0.08   12.8   0.7       0.08   12.8   0.7    2.3  3  ScsC_N     Copper resistance protein ScsC N-terminal domain
       0.11   12.9   0.1       0.28   11.6   0.1    1.7  1  Prok-TraM  Prokaryotic Transcriptional repressor TraM


Domain annotation for each model (and alignments):
>> NDK  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   3.9e-10   2.3e-06       3     108 ..       6     129 ..       4     161 .. 0.74
   2 !   25.2   0.0   2.1e-09   1.3e-05       1      53 [.     183     237 ..     183     244 .. 0.91
   3 !   68.2   0.0   1.2e-22   7.1e-19      54     129 ..     281     372 ..     259     377 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 3.9e-10
                 EEEEE-HHHHHTT-HHHHHHHH.HHHT-EEEEEEEECE-HHHHHHHT......GGGTTST....THHHHHHHHTS........SE...EEEEEEESTTH CS
         NDK   3 tlvliKPdavkrgligeiisrl.eekglkivalkmlrlteeqaeehY......aehkgkp....ffeelvefmts........gp...vvalvlegeda 79 
                 ++v+i P  + ++ +g i+srl  ++ l++v++ m   + e+++e+       +     p    + e + +++ +        g    v++l + ge+a
  CCG91497.1   6 SYVIINPYTLYKSRTGVILSRLlSQSSLELVGAAMYSPSAELVREYSkmivteS----DPqdreIQELIRDYILEnfmpnpqtGArqrVMVLLFRGENA 100
                 689******************96667*******************884444432....223332222222333334544454432666*********** PP

                 HHHHHHHH--SSTTTSSTTSHHHHH-SSS CS
         NDK  80 iekvreliGatnpaeaapgtiRadfgvsl 108
                 ++k re++G+ + + +  +tiR  fg  +
  CCG91497.1 101 VAKTREVVGNIRNRSKGGETIRDTFGDLI 129
                 *************************9876 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 2.1e-09
                 EEEEEEE-HHHHH..TT-HHHHHHHHHHHT-EEEEEEEECE-HHHHHHHTGGGTT CS
         NDK   1 ertlvliKPdavk..rgligeiisrleekglkivalkmlrlteeqaeehYaehkg 53 
                 +r++v++KPd  +  +g  g++i+ + + +l i+a+k+ +++ ++aee+Ya  ++
  CCG91497.1 183 QRAVVILKPDNFRfpSGRPGYVIDMFSRTELAITAIKVHHMSVAEAEEFYAPVRE 237
                 6899******987447899*******************************97765 PP

  == domain 3  score: 68.2 bits;  conditional E-value: 1.2e-22
                 STTHHHHHHHHTS............SE....EEEEEEESTTHHHHHHHHH--SSTTTSSTTSHHHHH-SSSTT-SEEE-SSHHHHHHHHHHH CS
         NDK  54 kpffeelvefmts............gp....vvalvlegedaiekvreliGatnpaeaapgtiRadfgvslgeNlvHgSdseesaereiklf 129
                 ++ f+++v+fmt              p    +++l++eg da++kvre++G+t+pa+a pg+iR++fg s+  N+ H+Sds+e+aereik++
  CCG91497.1 281 EEQFHSIVQFMTGinpkncpieqrtMPgkekCIILIYEGIDAVRKVREVLGPTDPAKAPPGSIRREFGQSIMVNAAHASDSPENAEREIKIL 372
                 56677788888776666644444441145559*********************************************************996 PP

>> ScsC_N  Copper resistance protein ScsC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.3   7.7e+03       7      12 ..      46      51 ..      46      51 .. 0.89
   2 ?   12.8   0.7   1.3e-05      0.08       3      16 ..      64      77 ..      62      77 .. 0.91
   3 ?   -1.8   0.0      0.48   2.9e+03       9      15 ..     235     241 ..     229     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.3
      ScsC_N  7 kivrdY 12
                ++vr+Y
  CCG91497.1 46 ELVREY 51
                69***9 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.3e-05
      ScsC_N  3 aaiekivrdYLleN 16
                 +i++++rdY+leN
  CCG91497.1 64 REIQELIRDYILEN 77
                69***********9 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.48
      ScsC_N   9 vrdYLle 15 
                 vr++L+e
  CCG91497.1 235 VRETLRE 241
                 9****98 PP

>> Prok-TraM  Prokaryotic Transcriptional repressor TraM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.7e-05      0.28      31      68 ..     212     248 ..     209     278 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHCHHHSCHHHHTTSCHH CS
   Prok-TraM  31 aLaisAIrehRrllaaaeavyeewvrasadekvseavl 68 
                 +Lai AI+ h  ++a+ae+ y   vr + +ek ++ ++
  CCG91497.1 212 ELAITAIKVHHMSVAEAEEFYAP-VRETLREKLKKPAG 248
                 69*******************99.67766666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3104.52
//
Query:       CCG91498.1  [L=353]
Description: putative O-sialoglycoprotein endopeptidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-86  288.9   0.0    5.2e-86  288.7   0.0    1.0  1  Peptidase_M22   Glycoprotease family
     0.0053   16.5   0.0     0.0069   16.1   0.0    1.2  1  Carbam_trans_N  Carbamoyltransferase N-terminus
  ------ inclusion threshold ------
       0.15   11.8   0.0       0.28   11.0   0.0    1.4  1  Thioredoxin_9   Thioredoxin


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.7   0.0   8.7e-90   5.2e-86       2     271 .]      27     315 ..      26     315 .. 0.96

  Alignments for each domain:
  == domain 1  score: 288.7 bits;  conditional E-value: 8.7e-90
                    CEXEEEEEEEEE....SSSSHHHHHHHHHHHHHHHHHHHHHHHTSTGGGEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHHHHCC CS
  Peptidase_M22   2 vlanvvasqkelhakyGGvvPelasraHserllplieealaeaglsledldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleahalaa 97 
                    ++ +  +sq+ lh+++GG+vPe a r+Hs++l+ l++ ++++  lsl+d++aIavt+gPGl+ +L+vG +fA+gla++l++P++g+nhle+h++++
     CCG91498.1  27 IVDDQCISQALLHKPFGGIVPEFAVREHSKNLPMLMQGMIKRGSLSLQDVEAIAVTEGPGLMASLLVGNAFARGLAHGLGIPVYGINHLEGHLFSP 122
                    6677789999************************************************************************************** PP

                    HCT.SEC.SSC.EEEEESSSTEEEEEECT.TEEEEEEEESSSEHHHHHHHHHHHHT..SSCCHHHHHHHCTC..S.......EET...TEEE.CHH CS
  Peptidase_M22  98 rle.eke.efP.vvllvsGghtqvylvke.gryeilgetlddaagealdkvarllglpypggpkieklakeg..kkiefprplkg...ldfsfsGl 184
                    ++  e++ +fP + l+vsGght +  v++ ++ye +g+t+ddaagea+dkv+rllgl+ypggp+iek ak g  +++ fp  l++   ++fsfsGl
     CCG91498.1 123 FIGrEEKlRFPfLGLVVSGGHTILTKVDGpRKYEMIGSTIDDAAGEAFDKVGRLLGLDYPGGPEIEKWAKLGnaNAYAFPLSLIEknnYNFSFSGL 218
                    **964448**************************************************************998777*******9999********* PP

                    HHHHHHHHST.T.........HHHHHHHHHHHHHHHHHHHHHHHHHHCTBSEEEEESGGGGXHHHHHCHCCHHHHTTSEEEXXXHHHHSSXCHHHH CS
  Peptidase_M22 185 ktavlkelek.e.........vedlaasfqeavvdhlvekteralklpkakelvilGGvaankrLrealeeeaeelglkliiPplkyctdnaamia 270
                    ktav+  +ek +         + d++asfqea+++++ ekt  a+k  + + ++ +GGv an+r+r+ l++ a e +++++i ++k+ctdna+mia
     CCG91498.1 219 KTAVRYFAEKrKeellekgqfFFDVCASFQEAIARVIQEKTISAAKAFGLSCIAASGGVLANQRIRTLLKQKALESDIEILIADKKFCTDNAVMIA 314
                    ******99555357999****99***********************************************9999999******************9 PP

                    H CS
  Peptidase_M22 271 w 271
                    +
     CCG91498.1 315 F 315
                    5 PP

>> Carbam_trans_N  Carbamoyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-06    0.0069     245     317 ..     219     292 ..     114     301 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-06
  Carbam_trans_N 245 kkvhdffeasalrlkearekde...dlaAsiqvflErlvvevlnivyeklkirnLclaGGvalNiklNsallesgl 317
                     k+  ++f++++  ++e +ek++   d+ As+q+++ r++ e + ++ + +++  ++ +GGv +N  + + l +++l
      CCG91498.1 219 KTAVRYFAEKR--KEELLEKGQfffDVCASFQEAIARVIQEKTISAAKAFGLSCIAASGGVLANQRIRTLLKQKAL 292
                     33334444444..445555555899***************************************888777766665 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.6e-05      0.28      35      66 ..     288     319 ..     276     339 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.6e-05
                    HHHT--S-EEEEEE--TT-HHHHHHHHHHHHH CS
  Thioredoxin_9  35 kiksiekklkilvltedwCgDaavnvPvlaki 66 
                    k k++e +++il+  +++C D av+++++a +
     CCG91498.1 288 KQKALESDIEILIADKKFCTDNAVMIAFVASL 319
                    6788999**********************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2294.87
//
Query:       CCG91499.1  [L=312]
Description: Nucleoside-diphosphate-sugar epimerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-49  167.5   0.0    2.6e-48  165.1   0.0    1.8  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    5.1e-45  153.8   0.0      6e-45  153.6   0.0    1.0  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.5e-08   34.2   0.0    5.8e-05   22.4   0.0    2.1  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    4.4e-08   32.6   0.0     0.0022   17.2   0.1    2.3  2  NAD_binding_4    Male sterility protein
      6e-06   25.5   0.0    1.1e-05   24.7   0.0    1.3  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    1.6e-05   24.2   0.0      0.013   14.6   0.0    2.1  2  RmlD_sub_bind    RmlD substrate binding domain
  ------ inclusion threshold ------
      0.078   12.4   0.0       0.11   11.9   0.0    1.2  1  adh_short        short chain dehydrogenase


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.1   0.0     1e-51   2.6e-48       2     330 ..       6     300 ..       5     302 .. 0.87

  Alignments for each domain:
  == domain 1  score: 165.1 bits;  conditional E-value: 1e-51
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHHH CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPey 97 
                    +TG aGf Gs+l+++Ll+ +y+v+gi+++ +  n++++ehl++      e+++ l+  D+t+  ++        +d ++++A        +e P +
     CCG91499.1   6 VTGAAGFLGSHLVDKLLSLDYRVIGIDNLIT-GNLANLEHLKH------EPRFDLIIQDVTEYINIPG-----TIDIIFHFASPASPIDYLELPIQ 89 
                    9*************************98765.69999999974......46899**999999766654.....46899******888888****** PP

                    HHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TT.....S-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS CS
  GDP_Man_Dehyd  98 taevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEt.....tpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesprr 188
                    t+++  +Gt+r L +++     k++ f  aStsE+YG++  +pq+E+     +p+ Pr  Y  aK +a+ ++++y++ +++++ + ++fn+ +pr+
     CCG91499.1  90 TLKAGSIGTYRTLGMAKV----KNCSFCLASTSECYGDPLVHPQSEDywgnvNPIGPRGVYDEAKRFAEALTMAYHRVHKIPTYIVRIFNTFGPRM 181
                    ****************86....5789********************888888*******************************************9 PP

                    -TTSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH........... CS
  GDP_Man_Dehyd 189 getfvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkgeeevgrak 284
                      +   r ++ +++++++gk + +++Gn++++R++ +v+D ++++ ++ ++d  e +++++ +++++ ef++  +  +g           e     
     CCG91499.1 182 RLR-DGRVVPAFISQALEGK-PLTVFGNGSQTRSFCYVSDLIDGVLALAHSDYHEPINLGNPKEMTILEFAKTICRLAGV---------PE----- 261
                    888.99*************9.89999**************************9999999999988888888754444432.........11..... PP

                    .TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHH CS
  GDP_Man_Dehyd 285 esgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvr 330
                         ++ ++  +    + +++  d+++a + LgWkp v++ee+++
     CCG91499.1 262 -----KIVFE--PLPVDDPKQRRPDITRAIRYLGWKPMVDVEEGLK 300
                    .....22222..222245556667*******************997 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.6   0.0   2.3e-48     6e-45       2     241 .]       5     239 ..       4     239 .. 0.88

  Alignments for each domain:
  == domain 1  score: 153.6 bits;  conditional E-value: 2.3e-48
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl...elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtln 97 
                 +VtGa+Gf+Gs+lv++ll+ +y+vig+d+l  ++n a+le+l      +l + d ++  ++     +d+++h+A  +++ ++ e p +++++  +gt++
  CCG91499.1   5 VVTGAAGFLGSHLVDKLLSLDYRVIGIDNL-ITGNLANLEHLkhePRFDLIIQDVTEYINIPG--TIDIIFHFASPASPIDYLELPIQTLKAGSIGTYR 100
                 6*****************************.66677777777765555555665555666555..9********************************* PP

                 HHHHHHHHTCTEEEEEEEGGGGTSCSSSS.BSTCS.TTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHH CS
   Epimerase  98 lleaarkagvkrllflsSsevYGkdaeqp.keett.ltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkil 194
                  l +a+ +++  +  +s+se YG++   p  e++  +  p+ p+  Y  aK+ +e l+ ay++ +++++ i+r+fn +Gpr    ++ rv+pa+i+++l
  CCG91499.1 101 TLGMAKVKNC-SFCLASTSECYGDPLVHPqSEDYWgNVNPIGPRGVYDEAKRFAEALTMAYHRVHKIPTYIVRIFNTFGPR-MRLRDGRVVPAFISQAL 197
                 **********.************999988444444144566***************************************9.9999************* PP

                 TTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 195 egkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 egk ++t++g+g++ R f+yv+D+++++l+++      d  e +n+G
  CCG91499.1 198 EGK-PLTVFGNGSQTRSFCYVSDLIDGVLALAHS----DYHEPINLG 239
                 ***.***********************9965554....445667766 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00014      0.37       2     116 ..       5     106 ..       4     120 .. 0.68
   2 !   22.4   0.0   2.2e-08   5.8e-05     134     251 ..     142     261 ..     136     272 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00014
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------.HHHHH CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKh.VPlve 94 
                      +vtGa+G +Gs+lv+++l+ + + i + +    +l ++e+ +    ++   +++   +i dv++  ++  ++     d++fh A     +  +e
       CCG91499.1   5 VVTGAAGFLGSHLVDKLLSLDYRVIGIDNLITGNLANLEHLK----HEP--RFD--LIIQDVTEYINIPGTI-----DIIFHFASPASpIDYLE 85 
                      69********************99999888888888888754....222..334..5688887776665554.....48888776433133333 PP

                      HSHHHHHHHHHHHHHHHHHHHH CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaai 116
                        p++++k   +gt  ++ +a+
       CCG91499.1  86 -LPIQTLKAGSIGTYRTLGMAK 106
                      .466666666666666666555 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 2.2e-08
                      --SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTGT.....TSSHHHHHHHHHTTSSEEES.-TT-EEEEE-HHHHHHHHHHHHHH-- CS
  Polysacc_synt_2 134 PtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlgSr.....GSviplFkkqikeggpvtvT.dpemtRyfmtieeavqLvlqalalak 221
                      P  v+  +Kr+ae l++a+++ +   k   ++vR  N +g r     G v+p F +q  eg+p+tv  + + tR f  +++ ++ vl  ++   
       CCG91499.1 142 PRGVYDEAKRFAEALTMAYHRVH---KIPTYIVRIFNTFGPRmrlrdGRVVPAFISQALEGKPLTVFgNGSQTRSFCYVSDLIDGVLALAHSDY 232
                      66788899************999...566677777777765444446*******************626689**************98877777 PP

                      SS-EEEE--.-EEEHHHHHHHH........ CS
  Polysacc_synt_2 222 ggeifvldmGepvkivdlakalielsglee 251
                      +  i + +  + ++i++ ak++++l+g+ e
       CCG91499.1 233 HEPINLGNP-KEMTILEFAKTICRLAGVPE 261
                      777888877.9**************99755 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   8.7e-07    0.0022       1      22 [.       6      27 ..       6      37 .. 0.87
   2 !   13.2   0.0   1.4e-05     0.037      83     203 ..      63     173 ..      47     218 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.7e-07
                   EE-TTSHHHHHHHHHHHHHS-. CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpe 22
                   +TGa GFLG++L+ kLL+ + +
     CCG91499.1  6 VTGAAGFLGSHLVDKLLSLDYR 27
                   7****************87765 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.4e-05
                    HHHHH--EEEE--SS...-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCH CS
  NAD_binding_4  83 elaeevdviihsaAt...vnfdepykellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpnt 175
                    ++  ++d+i+h a     +++ e   + l++   Gt + l +ak +k+  ++   ST+ ++g+   +            + +d     +  g    
     CCG91499.1  63 NIPGTIDIIFHFASPaspIDYLELPIQTLKAGSIGTYRTLGMAK-VKNC-SFCLASTSECYGDPLVHP-----------QSEDYWGNVNPIGPRGV 145
                    55678999*9998651115566655567888999*********9.8788.9******99999999765...........3356667777788889* PP

                    HHHHHHHHHHHHHHHHHHH---EEEEEE CS
  NAD_binding_4 176 YeqsKalaEklvrearrrsglpvvivRp 203
                    Y   K  aE l  +++r +++p+ ivR+
     CCG91499.1 146 YDEAKRFAEALTMAYHRVHKIPTYIVRI 173
                    ***************************7 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   4.1e-09   1.1e-05       1     223 [.       5     222 ..       5     237 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 4.1e-09
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD..lrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag.kltedeimkvnvkGT 96 
                 vvtG+aGFlG++lv +L++l+    v  +D  +  +   le+l++  + ++i  Dvt+  ++      +d+++h as            +  k+   GT
  CCG91499.1   5 VVTGAAGFLGSHLVDKLLSLDY--RVIGIDnlITGNLANLEHLKHEPRFDLIIQDVTEYINIPG---TIDIIFHFASPASPIDyLELPIQTLKAGSIGT 98 
                 8********************5..5555563333333445555555566688888888776665...678999999865555524455568899999** PP

   3Beta_HSD  97 rnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdk....llvp 191
                    l +++ ++   +   S+ e  g+  l ++  +       +  +  +y e K+ aE+l ++          ++ T  +R    +G++ +    ++vp
  CCG91499.1  99 YRTLGMAKVKNCS-FCLASTSECYGD-PLVHPQSEDYWGNVNPIGPRGVYDEAKRFAEALTMAYHR-----VHKIPTYIVRIFNTFGPRMRlrdgRVVP 190
                 ******9988876.567999999999.23333332223334455599************9997766.....55779************86522225777 PP

   3Beta_HSD 192 llkqlaklglalfkigdeevlsdrvYvgNvaw 223
                 ++   a  g+ l   g+ +++ ++ Yv  + +
  CCG91499.1 191 AFISQALEGKPLTVFGNGSQTRSFCYVSDLID 222
                 7777777888999999999999**99987755 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00067       1.7       4      52 ..       5      51 ..       1      59 [. 0.73
   2 !   14.6   0.0   5.3e-06     0.013     110     236 ..     131     262 ..     109     283 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00067
                   EEESTTSHHHHHHHHHCTTTSEEEEEE-TTT--TTSHHHHHHHHHHH-- CS
  RmlD_sub_bind  4 lvtGanGqlGseLakqlaeeglevlaltreeldltdaeavaellkeakp 52
                   +vtGa G lGs+L+++l + ++ v++++  +l   + +++++l +e + 
     CCG91499.1  5 VVTGAAGFLGSHLVDKLLSLDYRVIGID--NLITGNLANLEHLKHEPRF 51
                   79**********************9994..3444444445555555555 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 5.3e-06
                    TS-B-TTS----SSHHHHHHHHHHHHHHH....H-SSEEEEEE-SEESS....SSS-HHHHHHHHHHH-SEEEEESS..-EE--EEHHHHHHHHHH CS
  RmlD_sub_bind 110 krpYeeddetsPlnvYGrtKlaGEqavla....agkkalivRtswvyge....kgknfvktmlrlakereelkvvaD..qlgsPTsardlAevllq 195
                    ++ + + ++ +P++vY ++K   E    a    ++  ++ivR+   +g     ++   v  +++ a e ++l+v+    q++s  ++ dl + +l+
     CCG91499.1 131 EDYWGNVNPIGPRGVYDEAKRFAEALTMAyhrvHKIPTYIVRIFNTFGPrmrlRDGRVVPAFISQALEGKPLTVFGNgsQTRSFCYVSDLIDGVLA 226
                    4558888999*****************994433334579*********9788778899****************964449**************** PP

                    HHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCHTTS CS
  RmlD_sub_bind 196 llekaaeekelagvyHlanegetswlefArailkeagadse 236
                    l++   +     +   l+n +e++ lefA+ i + ag+ ++
     CCG91499.1 227 LAHSDYH-----EPINLGNPKEMTILEFAKTICRLAGVPEK 262
                    **99998.....566899****************9998763 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.4e-05      0.11       1      62 [.       2      62 ..       2      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.4e-05
                SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHH CS
   adh_short  1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdre 62
                kv +vtGa++ +G  ++++l++ +++v+ +d+      + +++lk e  ++  i  Dvt++ 
  CCG91499.1  2 KVSVVTGAAGFLGSHLVDKLLSLDYRVIGIDNLITGNLANLEHLKHE-PRFDLIIQDVTEYI 62
                6789***************************9999888999999975.78888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2297.75
//
Query:       CCG91500.1  [L=340]
Description: Kef-type K+ transport system, predicted NAD-binding component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-31  106.7   0.4    1.7e-30  105.7   0.1    1.8  2  TrkA_N           TrkA-N domain
    1.5e-14   53.7   6.5    2.6e-14   52.9   6.5    1.4  1  Ion_trans_2      Ion channel
    6.5e-09   35.5   0.0    3.3e-08   33.2   0.0    2.2  2  TrkA_C           TrkA-C domain
  ------ inclusion threshold ------
      0.028   14.7   0.0      0.064   13.5   0.0    1.7  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.069   13.0   0.0       0.11   12.4   0.0    1.4  1  NAD_binding_10   NAD(P)H-binding
      0.077   13.1   0.0       0.18   11.9   0.0    1.6  1  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin
      0.085   13.0   3.3        8.2    6.7   0.1    2.4  2  ATPase_gene1     Putative F0F1-ATPase subunit Ca2+/Mg2+ trans


Domain annotation for each model (and alignments):
>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.8   1.2e+04       2      16 ..      74      88 ..      73      90 .. 0.78
   2 !  105.7   0.1   6.5e-34   1.7e-30       1     116 []     117     232 ..     117     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.8
                EEES-SHHHHHHHHH CS
      TrkA_N  2 iiiGlGrvGrslaee 16
                ii+G++  G+s    
  CCG91500.1 74 IICGVSLAGYSASSA 88
                89**99999887665 PP

  == domain 2  score: 105.7 bits;  conditional E-value: 6.5e-34
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESSG CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqdp 99 
                 +i++G+Gr+Gr ++eeL+++g+++v+id+d+e++++l++ +  ++ g+++dee+L ea+i++a ++ a+t+ d++nil+vl+a+ lnp ++i++ra+++
  CCG91500.1 117 FIVCGYGRTGRYVVEELKSEGQSYVIIDTDPEKIAHLTASEELAILGSGSDEEILCEAKIKEAAGLAATTSIDKENILIVLTARFLNPSLQIVSRASSK 215
                 79*****************6657******************99******************************************************** PP

                 GGHHHHHHHTTSEEEEH CS
      TrkA_N 100 ehaellkklgadvvisp 116
                  ++++l k+ga++v+ p
  CCG91500.1 216 NFEDKLIKAGANRVLLP 232
                 *************9876 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   6.5     1e-17   2.6e-14       2      73 ..      20      88 ..      19      94 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 1e-17
                 HHHHTCHHHHHHHHT....T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  2 vlllvlifgaviysleegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavl 73
                 +l+l+l++g++ y +    ek s+ld++Y++++tl+T+GY ++vp ++ g++fti++i+ G++l ++  +  
   CCG91500.1 20 ILILLLFLGTIGYKF---IEKISLLDSIYMTVITLSTVGYKEVVPLSPEGKIFTIFLIICGVSLAGYSASSA 88
                 899************...9999************************9989**************99988765 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.94   2.4e+03      15      39 ..     108     129 ..     108     132 .. 0.80
   2 !   33.2   0.0   1.3e-11   3.3e-08       2      68 ..     267     336 ..     266     338 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.94
                 SBHHHHTHHHHS-EEEEEE-T-EEE CS
      TrkA_C  15 ktlkelnlrargvlvvairRggeli 39 
                 k+++   lr+  ++v ++ R g+++
  CCG91500.1 108 KMIQK--LRN-HFIVCGYGRTGRYV 129
                 56777..999.9******8887876 PP

  == domain 2  score: 33.2 bits;  conditional E-value: 1.3e-11
                 EEEEEE--GGGTTSBHHHHTHHHH.S-EEEEEE..-T-EEES--TT-B--TT-EEEEEEEHHHHHHHHHH CS
      TrkA_C   2 vevtvpagsplvGktlkelnlrar.gvlvvair..RggeliipsgdtvLeeGDvllvvgspsdlaelrel 68 
                  ++ v++ s l+G+tl+++++r++ +v+++a +   g +  + +g tvL +G +l+ +gs+++l++l ++
  CCG91500.1 267 EQILVDKRSSLIGQTLAQSQIRNNlNVTILACKlpDGTWTHSVGGKTVLCPGMTLIALGSRENLHKLLKI 336
                 5789****************************844559****************************9886 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.5e-05     0.064       2      44 ..     118     157 ..     117     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-05
                      EEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH CS
  Sacchrp_dh_NADP   2 liiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka 44 
                      ++ G+G++G+ v+e+l+ +++     +++d + ek ++l a++
       CCG91500.1 118 IVCGYGRTGRYVVEELKSEGQS---YVIIDTDPEKIAHLTASE 157
                      688****************996...9*********99998876 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.3e-05      0.11       4      46 ..     123     163 ..     121     236 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.3e-05
                     SHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE- CS
  NAD_binding_10   4 GkvGrllvkellargghevtalvRnpeklaeleaeeglevveg 46 
                     G++Gr++v+el ++g  + +++  +pek+a+l a+e+l ++ g
      CCG91500.1 123 GRTGRYVVEELKSEG-QSYVIIDTDPEKIAHLTASEELAIL-G 163
                     9*************6.89999999********977776554.3 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.9e-05      0.18      25      57 ..     116     150 ..     102     164 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.9e-05
                    EEEEE--SHHHHHHHHHHHHCT-EEEEE-S-H..H CS
  AdoHcyase_NAD  25 vavvaGyGdvGkGcaaslkglGarvivtevdP..i 57 
                      +v+GyG  G+   + lk+ G   ++ + dP  i
     CCG91500.1 116 HFIVCGYGRTGRYVVEELKSEGQSYVIIDTDPekI 150
                    579*********************99999999444 PP

>> ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.4    0.0035       8.8      27      45 ..      12      30 ..       8      31 .. 0.91
   2 ?    6.7   0.1    0.0032       8.2      33      51 ..      67      85 ..      62      86 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0035
  ATPase_gene1 27 kkfgtspwfliiglllGla 45
                  kkf+t+ + li++l+lG +
    CCG91500.1 12 KKFQTAFFILILLLFLGTI 30
                  89***************87 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0032
  ATPase_gene1 33 pwfliiglllGlaaGfynv 51
                   +f+i+++++G+ +++y++
    CCG91500.1 67 KIFTIFLIICGVSLAGYSA 85
                  69*************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2522.35
//
Query:       CCG91501.1  [L=145]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-25   89.1   0.0    3.7e-25   88.2   0.0    1.4  2  RsfS      Ribosomal silencing factor during starvation
  ------ inclusion threshold ------
       0.17   11.5   0.0       0.21   11.2   0.0    1.2  1  FBA       F-box associated region


Domain annotation for each model (and alignments):
>> RsfS  Ribosomal silencing factor during starvation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.2     1e+04       6      20 ..       6      21 ..       5      29 .. 0.69
   2 !   88.2   0.0   4.2e-29   3.7e-25       5      99 .]      46     139 ..      42     139 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.2
                HHHHTT-E.EEEEEE- CS
        RsfS  6 aledkkae.divvidl 20
                a++++ka  div+ ++
  CCG91501.1  6 AIRKHKAVlDIVLNKI 21
                5666666668887665 PP

  == domain 2  score: 88.2 bits;  conditional E-value: 4.2e-29
                 HHHHHTT-EEEEEEE-TTTTBSS-SEEEEEEESSHHHHHHHHHHHHHHHHHC.C-.--EEECBTTS.SEEEEE-SSEEEEEEECCCHHHHHHHHHC CS
        RsfS   5 ealedkkaedivvidlrekkssladymviatakserhlkalaeelekklkeeaae.alsveGlnegddWvlvdlgdvvVhllteeaReeydLEelW 99 
                 +++ +kk+ d  ++dlr+  ss+ d++v++ta+se hlkala elekk++ee +  ++++eG  ++++W+++d+g +++h++te++R++y+LE+lW
  CCG91501.1  46 TIILEKKGLDPLILDLRQ-ISSFVDFFVVCTATSEPHLKALAFELEKKIREEFHLePIHIEGS-SKSHWIIIDYGPLLIHVFTEKERAFYELEKLW 139
                 67889*************.79******************************9666899*****.788***************************** PP

>> FBA  F-box associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.4e-05      0.21      59     138 ..      39     116 ..      12     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.4e-05
         FBA  59 ewcskeqvidLkkeGlweelLdsfqpeIkvsdwyaerkdcgcvYeliveLl..dkkkkviaefdtkelvteqwadrqwkqvs 138
                 +  ++ ++i L+k+Gl + +Ld  q++  v   +     c+++ e +++ l  + +kk+ +ef+++++++e  ++++w  + 
  CCG91501.1  39 KLAQRCKTIILEKKGLDPLILDLRQISSFVDFFV----VCTATSEPHLKALafELEKKIREEFHLEPIHIEGSSKSHWIIID 116
                 55677899*****************998886665....778888888887776778888899****************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1109.65
//
Query:       CCG91502.1  [L=205]
Description: putative nicotinate-nucleotide adenylyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-30  104.6   0.0    6.1e-30  104.3   0.0    1.1  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0   3.4e-34   6.1e-30       1     143 []      12     169 ..      12     169 .. 0.91

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 3.4e-34
                      EEEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-SCSSTHHHHHHHHHHH.TTCTTEEEEEEESEHH..........HHHHHTTTT CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkkkplasaeeRlemlela.kevdevisvdpweltr..........evlkklkpd 83 
                      ++gG+FDpiH+GHl  +   ++++ +++i+++p++++p kk+ p+asa++Rlem++la k  ++ ++ + +el+           +  +kl ++
       CCG91502.1  12 IFGGSFDPIHHGHLISAMDCLEQMALQKIIFMPCARSPFKKTNPIASAQDRLEMIRLAiKPFKN-FELSSFELQSpapsysihtaKACQKLFQQ 104
                      79********************************************************666666.***************88777666666666 PP

                      .EEEEEEEHHHHHHHHCHHHHHHHHHHHHHEEEEEE....HTTCEEEEEEECCTTTCSHHHHHHH CS
  CTP_transf_like  84 .klylvigadvledfsewkeleeilgnvklvvvsrp....ekqanvllkaekrtngiSstkirer 143
                       +l+++ig d+++ +++wke+ e+++ vk++vv r     ek+  + +++++r+ +iSs++irer
       CCG91502.1 105 iELFWIIGSDQVQGLPRWKEFAELIKIVKFIVVPRAgfpfEKKSYLRILPTNRYIDISSSEIRER 169
                      9***********************************88765555556****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1553.51
//
Query:       CCG91503.1  [L=367]
Description: Fructose-1,6-bisphosphatase II [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.6e-111  370.9   0.0   4.2e-111  370.7   0.0    1.0  1  FBPase_glpX  Bacterial fructose-1,6-bisphosphatase, glpX-enco
  ------ inclusion threshold ------
       0.17   11.4   0.0       0.26   10.8   0.0    1.3  1  Inositol_P   Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> FBPase_glpX  Bacterial fructose-1,6-bisphosphatase, glpX-encoded
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.7   0.0  4.7e-115  4.2e-111       3     308 .]      19     340 ..      17     340 .. 0.96

  Alignments for each domain:
  == domain 1  score: 370.7 bits;  conditional E-value: 4.7e-115
  FBPase_glpX   3 lalelvrvteaAAlaaarlvGrgdkeaadqaAveamrkalneleikgevviGegekdeapmLyiGekvGsgeg..pevdiavdpleGttlvAkglpna 98 
                  +++++vr+te AAl+ +r++Grg+ke+ad+aA +a+r +++ ++i+gevviGeg kd+ap +++Gek+G+ ++  p +diavdp++Gtt vAkg   +
   CCG91503.1  19 IQFDFVRATEGAALTVYRWLGRGEKEKADAAASDAIRGMFDLMDIRGEVVIGEGIKDKAPGIFKGEKLGRWTEnaPLYDIAVDPIDGTTNVAKGSGSS 116
                  6899*****************************************************************9665579********************** PP

  FBPase_glpX  99 isviAvaekg.....sllkapdvYmeKlvvgpeak........gvidldapveenlkavakalgkevedltvvvLdrpRheelieeireagarvklis 183
                  +sviA+a+ +     +ll++p +Y+ Kl+ gp++k        ++++l++pv+e l ++a+ l+k+++dl+v+vLdrpRhe+li+eir++g+  +lis
   CCG91503.1 117 LSVIAAASPEpgvecALLDIPCFYVMKLAYGPQVKnyirslgvDCLKLTSPVDELLPIIARGLRKRLTDLVVCVLDRPRHERLIKEIRSMGCALRLIS 214
                  *******654446669******************978888888888**************************************************** PP

  FBPase_glpX 184 dGDvaaaiaaaleesgvdvllGiGgapEGvlaAaalkclgGemqarlvprkeeereraekmgi.edldkvltledLvkgddvifaatgvTdgelLkgv 280
                  dGDv+aa+   l+  g+dv++GiGgapE+vlaAaa+kclgGe+q  ++p++e+er+ + ++g+ + l++++ ++dL++g+++if+at++Td+  + gv
   CCG91503.1 215 DGDVTAAMLPSLPAGGIDVYIGIGGAPEAVLAAAAIKCLGGEIQIMVWPKDETERQFLIEQGWeDRLNQIFYTDDLARGGNIIFCATAITDCPGIPGV 312
                  ***************************************************************4458******************************* PP

  FBPase_glpX 281 rfkgggarteslvmrsksgtvrfiesih 308
                  rf+++ a t+sl+mr+k++t+r+ie++h
   CCG91503.1 313 RFTDKYAITTSLLMRAKNRTIRKIETYH 340
                  **************************98 PP

>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.9e-05      0.26      88     103 ..      98     113 ..      45     139 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.9e-05
                 EEEEEEETHHHHHHT- CS
  Inositol_P  88 wivDPiDGTknFvrgi 103
                 + vDPiDGT+n ++g+
  CCG91503.1  98 IAVDPIDGTTNVAKGS 113
                 78*********98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 2368.38
//
Query:       CCG91504.1  [L=284]
Description: Membrane associated serine protease, Rhomboid family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-10   40.9   9.7    1.9e-10   40.9   9.7    2.1  2  Rhomboid  Rhomboid family
  ------ inclusion threshold ------
        0.2   11.4   0.0       0.34   10.7   0.0    1.3  1  NETI      NETI protein


Domain annotation for each model (and alignments):
>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.02   1.8e+02     125     148 ..      27      50 ..      15      52 .. 0.81
   2 !   40.9   9.7   2.2e-14   1.9e-10       4     116 ..      65     182 ..      62     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.02
                 TTTHHHHHHHHHHHHHHHHHHCCH CS
    Rhomboid 125 gvsnlAHlgGllaGlllgllllrr 148
                 gv  lAH + +++G+++++l +++
  CCG91504.1  27 GVLILAHCVCFIIGVFAAALDFSS 50 
                 57789***********99987766 PP

  == domain 2  score: 40.9 bits;  conditional E-value: 2.2e-14
                 CC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S......-EESSHHHHHHHHHHHHHHHHCCCCGS-- CS
    Rhomboid   4 rgelwrlltsmflHagwlHllfNmlallvfGsplerrlGslrflllyllsglagsllsllfsaeses...plvGaSGaifgllgallvlvprnrkllrk 99 
                 + +lw+llt+ ++H   l +++ ml+l++fG  +e++lG+l++llly++  ++ +++sl +sa + +   ++ G   + f+l+ a++ l+p++   l+ 
  CCG91504.1  65 HTKLWQLLTYPWIHTPSLAFALDMLVLYWFGHDVEHILGRLKYLLLYFSLIFLPAVFSLGLSAIDPTirgIMNGSDLIHFSLFIAYTCLFPSSELFLGI 163
                 5789*********************************************9999777776666555445559*********************9987776 PP

                 --HC.....CCCCCCCCCC CS
    Rhomboid 100 liia..llllllfillnlv 116
                    +  l++l+lf l++++
  CCG91504.1 164 KAKWvaLIFLALFSLIDIA 182
                 6555335555555555554 PP

>> NETI  NETI protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.8e-05      0.34       4      21 ..     241     258 ..     238     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.8e-05
        NETI   4 VeeneTIedcLeRmkkeG 21 
                  ee+eTI+++L++++k G
  CCG91504.1 241 TEEDETIDAILDKIAKSG 258
                 58**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 1983.39
//
Query:       CCG91505.1  [L=530]
Description: Serine protease Do (Heat-shock protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-32  112.7   0.3    4.8e-32  111.9   0.3    1.4  1  Trypsin_2      Trypsin-like peptidase domain
    2.2e-16   59.9   0.0    2.1e-14   53.6   0.0    2.5  2  PDZ_2          PDZ domain
    3.2e-14   53.3   0.0    5.4e-14   52.5   0.0    1.3  1  Trypsin        Trypsin
    2.9e-12   46.2   0.0    9.6e-11   41.4   0.0    2.8  2  PDZ_6          PDZ domain
    7.4e-08   32.6   0.1    6.7e-07   29.6   0.0    2.5  3  PDZ            PDZ domain
     0.0022   16.7   0.1        0.2   10.2   0.5    2.1  2  Peptidase_S46  Peptidase S46
  ------ inclusion threshold ------
       0.12   11.6   0.1        3.9    6.6   0.4    2.1  2  Peptidase_S32  Equine arteritis virus serine endopeptidase S3


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.3   1.9e-35   4.8e-32       1     150 []     137     272 ..     137     272 .. 0.99

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 1.9e-35
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggeks 99 
                 GsG+++++dg ilTnaH+v++a + +v            dgr+++ak+++ d+ +D+A+lk+   ++  l +l +g+s+al++ge+v++vG+p g ++ 
  CCG91505.1 137 GSGIILSDDGNILTNAHLVKNAREIRV---------QLFDGRRYEAKLLGIDSPTDVAVLKI---SAQHLSVLNWGDSDALQVGEQVFAVGNPFGLTG- 222
                 9********99****************.........9***************999*******...*********************************. PP

   Trypsin_2 100 gsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                  svs+Givs+  ++++ +s++ e+f+qtdaa++pG+SGG+l++ +G++vG+
  CCG91505.1 223 -SVSRGIVSAKGRNPTLSSTSYEDFIQTDAAINPGNSGGALINVRGELVGI 272
                 .9************************************************8 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   8.1e-18   2.1e-14       1      81 [.     311     401 ..     311     402 .. 0.96
   2 ?    3.7   0.0      0.03        77      10      41 ..     456     484 ..     437     523 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 8.1e-18
                 ....XX------............-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEEE CS
       PDZ_2   1 pylGvsvsdeed..........tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvevk 81 
                 ++lGv+++++++          t+g+l+++V++ +Pa+kagl+ gD+i+k ++ +vk+ ++l+  +++  +G+++ + ++R+g+k+++ v+
  CCG91505.1 311 GFLGVETQEVDEdlqqifglptTEGALITKVEPHSPASKAGLQRGDIIVKYNEMPVKDPAELRISVSQSPAGSKIPIVFYREGQKHQIYVE 401
                 5799999999999*************************************************************************99886 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.03
                 ---..-EEEEEE-TTSGGGGT.--TT-EEEEE CS
       PDZ_2  10 eedtggvlvvsVkeggPaakaglkagDvilkv 41 
                 +  ++g++ v+V+ g Pa +  l +gDvi ++
  CCG91505.1 456 K--ATGIYLVDVEGGYPAFDL-LYPGDVIEEI 484
                 3..569***********9887.******9766 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   2.1e-17   5.4e-14      26     215 ..     136     293 ..     113     299 .. 0.76

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 2.1e-17
                 EEEEEEEETT.EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTSTTTEEE CS
     Trypsin  26 lCgGslisen.wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttcl 123
                 l +G+++s++  +lT+aH v+na++++v       +  +g   ++k+         ++ t   D+a+lk++++     + + +++ + s+ l+vg+  +
  CCG91505.1 136 LGSGIILSDDgNILTNAHLVKNAREIRV-------QLFDGRRYEAKLLG------IDSPT---DVAVLKISAQ-----HLSVLNWGD-SDALQVGE--Q 210
                 55678888887***********888888.......45555434444555......67888...*********9.....99999**99.66688995..5 PP

                 EEESSBSSTSSBSSBEEEEEEEEEEHH.HHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEE.SSSSCTTSEEEEEEGG CS
     Trypsin 124 vsGwgrtkekgksdtlqevevpvvsre.tcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswg.kgcakgnrpgvytkvs 215
                 v ++g+++      ++  + v++  r+ t +s    +  e++++++a     ++++G+SGG+l++  gelvGi+++   g +  n +g++++ +
  CCG91505.1 211 VFAVGNPFGLT--GSVSRGIVSAKGRNpTLSS----TSYEDFIQTDA-----AINPGNSGGALINVRGELVGINTAIySGNGGSNGIGFAIPSK 293
                 55566654444..4556566666555544444....578********.....*************************888888888***99976 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   3.8e-14   9.6e-11       2      56 .]     338     391 ..     337     391 .. 0.91
   2 ?    1.7   0.1     0.091   2.3e+02      18      56 .]     477     519 ..     463     519 .. 0.72

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 3.8e-14
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallr.gsagesvvlvvrr 56 
                 +t V+p+sPA +AGl+ GDii++ N  pv  +++a+++  +  ++ag+++ +v+ r
  CCG91505.1 338 ITKVEPHSPASKAGLQRGDIIVKYNEMPV--KDPAELRISVSqSPAGSKIPIVFYR 391
                 899**************************..******9888888888888888765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.091
       PDZ_6  18 vGDiilsv...NGqpveglsladvaallr.gsagesvvlvvrr 56 
                 +GD+i ++   +  p++ +s+a++ +l+   +a esv + ++r
  CCG91505.1 477 PGDVIEEIrrpGSAPIKIRSVAEFLQLINqIPATESVAVFLQR 519
                 6666666655555666669999999999988999998887776 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.7   1.2e+04      43      55 ..     204     216 ..     201     217 .. 0.80
   2 !   29.6   0.0   2.6e-10   6.7e-07       6      73 ..     307     381 ..     302     388 .. 0.84
   3 ?   -1.0   0.0       0.9   2.3e+03      25      53 ..     457     484 ..     441     506 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.7
                 TSSTTEEEEEETT CS
         PDZ  43 glkvGDkIlsvNg 55 
                  l+vG ++ +v++
  CCG91505.1 204 ALQVGEQVFAVGN 216
                 39******99986 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 2.6e-10
                 TSTTSESSEEEEEETTSS.......SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTT CS
         PDZ   6 kegrgglGfslkggsdqr.......gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgs 73 
                 k  rg+lG++ ++ +++        + +g+ +++v+p ++a ++gl+ GD+I++ N  +v++ +++++     ++
  CCG91505.1 307 KVIRGFLGVETQEVDEDLqqifglpTTEGALITKVEPHSPASKAGLQRGDIIVKYNEMPVKDPAELRISVSQSPA 381
                 44789*******9888779***************************************99998887776555555 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.9
                 SSSEEEEEECTTSHHHHHTSSTTEEEEEE CS
         PDZ  25 dkgifvsevlpggaaeadglkvGDkIlsv 53 
                 ++gi+  +v+ g +a    l +GD+I ++
  CCG91505.1 457 ATGIYLVDVEGGYPAFDL-LYPGDVIEEI 484
                 578888888888888888.9999999776 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0067        17      47      69 ..     135     157 ..     107     161 .. 0.77
   2 !   10.2   0.5   7.9e-05       0.2     627     651 ..     249     273 ..     215     277 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0067
                    TTEE-EE-STT-EEEE-HHHHHH CS
  Peptidase_S46  47 ggCtasfVSpeGLvlTNHHCayg 69 
                    +  ++ + S++G +lTN H + +
     CCG91505.1 135 SLGSGIILSDDGNILTNAHLVKN 157
                    3679***************8865 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 7.9e-05
                    ES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 627 stnDitGGNSGSPvlngkgelvGla 651
                    +++ i  GNSG +++n +gelvG++
     CCG91505.1 249 TDAAINPGNSGGALINVRGELVGIN 273
                    5677889****************97 PP

>> Peptidase_S32  Equine arteritis virus serine endopeptidase S32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.029        74     111     143 ..     134     165 ..     127     177 .. 0.81
   2 ?    6.6   0.4    0.0015       3.9     194     227 ..     245     275 ..     212     291 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.029
                    SSEEEEEEEECTTEEEEEEEHHHH-.TSEEEEEE CS
  Peptidase_S32 111 sslGsGgvftidgevvvvtashvlg.dnkarvsi 143
                    +slGsG + ++dg+  ++t +h++  + + rv+ 
     CCG91505.1 134 TSLGSGIILSDDGN--ILTNAHLVKnAREIRVQL 165
                    589*********98..79*****98455666665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0015
                    EEE-SS-EE----GGGTT-EEEETTE.EEEEEEE CS
  Peptidase_S32 194 gllgkevalcftkcGDsGspvvdedgelvGvhtG 227
                    +++ +++a+   ++G+sG ++++  gelvG+ t 
     CCG91505.1 245 DFIQTDAAI---NPGNSGGALINVRGELVGINTA 275
                    455555554...79*****************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3779.06
//
Query:       CCG91507.1  [L=71]
Description: hypothetical protein MFUM_110001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 504.94
//
Query:       CCG91508.1  [L=86]
Description: hypothetical protein MFUM_110002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       173  (0.00964917); expected 358.6 (0.02)
Passed bias filter:                      139  (0.0077528); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 665.05
//
Query:       CCG91509.1  [L=62]
Description: hypothetical protein MFUM_110005 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 498.45
//
Query:       CCG91510.1  [L=157]
Description: Cytochrome c family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-12   46.6   0.0    6.4e-12   45.6   0.0    1.5  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    1.3e-11   45.4   0.0    3.1e-11   44.3   0.0    1.6  2  Cytochrom_C      Cytochrome c
     0.0011   18.7   0.0     0.0025   17.5   0.0    1.6  1  Cytochrom_C550   Cytochrome c-550 domain
  ------ inclusion threshold ------
      0.088   11.4   0.0       0.12   11.0   0.0    1.1  1  DHOR             Di-haem oxidoreductase, putative peroxidase
      0.097   13.3   0.0       0.16   12.6   0.0    1.5  1  CCP_MauG         Di-haem cytochrome c peroxidase


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.8e-15   6.4e-12       3      67 .]      28     112 ..      26     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 1.8e-15
  Cytochrome_CBB3   3 aaaGaalykknCasCHgkggag.....pslagrdwep...dalvdiiknG............kgaMpafggqlsdeelwalvaYl 67 
                      +++G++ y+ nCa+CH + g g     p+l+g++  +   +++v+ii nG            +g M++++  lsd+ ++a+++Y+
       CCG91510.1  28 MKDGKKFYEMNCAACHQPTGTGvpgvyPPLSGTKIVNggsKRVVAIILNGlqgpfkvdgtqyNGVMQPWKAILSDDRIAAVATYI 112
                      689**************6666666799****9977655669*********999999888887789*******************8 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   8.6e-15   3.1e-11       2      91 ..      29     115 ..      28     116 .. 0.83
   2 ?   -2.9   0.0       4.5   1.6e+04      70      83 ..     139     149 ..     123     150 .. 0.51

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 8.6e-15
                  --HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHHTT CS
  Cytochrom_C   2 arGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYLksl 91 
                  ++Gk+ ++ nCaaCH+++g+g+++  +p+lsg    +++++ +  +  +    ++  +  + ++++ m+++k  l+++ ia++a Y+++ 
   CCG91510.1  29 KDGKKFYEMNCAACHQPTGTGVPGV-YPPLSGTKIVNGGSKRVVAIILNG--LQGPFKVDGTQYNGVMQPWKAILSDDRIAAVATYIRQS 115
                  68*****99*************977.*****9998888877766666664..44455566666778889999***************996 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.5
                  GGG.TT--HHHHHH CS
  Cytochrom_C  70 parkerlteqeiad 83 
                  +a+   l+e+++++
   CCG91510.1 139 TAP---LSEADVNA 149
                  222...77777666 PP

>> Cytochrom_C550  Cytochrome c-550 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.1e-07    0.0025      18     119 ..      20     112 ..      17     121 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.1e-07
                     EEEEEHHHHHHHHHHHHHHTHHHHG.GGSBTTSTTSCSSHHHHHTSSS--SSHHHHHHHHHS-B-TTSSSBGTTTSSSCCGTTTTGGGTTS-HHH CS
  Cytochrom_C550  18 tvtlseeqlkkgkklFeaeCaqCHv.gGktktnpnvsLsledLalAtPpRdnvaalvdylknPtsyDGeedlaelhpslksadiypelrnltded 111
                     t++++++ +k+gkk +e +Ca CH   G+  +     Ls +++ +   +R  va +++ l+ P   DG++     ++ + ++  +     l+d+ 
      CCG91510.1  20 TSLFAQDIMKDGKKFYEMNCAACHQpTGTGVPGVYPPLSGTKIVNGGSKR-VVAIILNGLQGPFKVDGTQ-----YNGVMQP--WK--AILSDDR 104
                     678899999***************84577788888888888888877666.6777888888999999888.....4444444..52..3477777 PP

                     HHHHHHHH CS
  Cytochrom_C550 112 lkaiagyi 119
                     ++a+a+yi
      CCG91510.1 105 IAAVATYI 112
                     77777776 PP

>> DHOR  Di-haem oxidoreductase, putative peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.4e-05      0.12     358     377 ..      27      46 ..      21      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.4e-05
        DHOR 358 vieGaklFeqvgCaeChtpk 377
                 +++  k F++++Ca+Ch+p+
  CCG91510.1  27 IMKDGKKFYEMNCAACHQPT 46 
                 6677789***********98 PP

>> CCP_MauG  Di-haem cytochrome c peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.6e-05      0.16      21      39 ..      36      61 ..       8     148 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.6e-05
                S--HHHHSGCCCTT........S-SSS CS
    CCP_MauG 21 kisCasCHdpaagf........tdglk 39
                +++Ca CH+p+  +        + g+k
  CCG91510.1 36 EMNCAACHQPTGTGvpgvypplS-GTK 61
                466******97666333333320.122 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1174.60
//
Query:       CCG91511.1  [L=216]
Description: Pyridoxamine-phosphate oxidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-21   74.3   1.9    1.2e-20   73.3   1.9    1.5  1  PNP_phzG_C      Pyridoxine 5'-phosphate oxidase C-terminal di
    1.3e-15   57.3   0.0    2.7e-15   56.3   0.0    1.5  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> PNP_phzG_C  Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   1.9   1.3e-24   1.2e-20       1      43 []     175     216 .]     175     216 .] 0.96

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 1.3e-24
  PNP_phzG_C   1 WgGyrvvPeeiEFWqgrpsRlHdRfrYereeedgkWkierLsP 43 
                 WgGyr++Pe+iEFWqgr++R HdRf Y++e  +g+WkierL+P
  CCG91511.1 175 WGGYRLIPEKIEFWQGRENRFHDRFLYSKEA-SGQWKIERLAP 216
                 ***************************9876.68********9 PP

>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0     3e-19   2.7e-15      10      83 ..      44     116 ..      35     120 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 3e-19
                     HHSSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETTGSEEEEEEEEEEE CS
  Putative_PNPOx  10 aeskavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallflddelgrgvrieGtael 83 
                      e++av+lAT + +G   v+ vl ka d++ g++f+tn+ s k+++leenp++++  +++ l+r++ ++G  e+
      CCG91511.1  44 LEPNAVALATSNNQGEMKVRFVLIKAIDDK-GFLFFTNYLSIKGKHLEENPKASFACYWPTLYRQICVSGICEK 116
                     578***************************.***********************************99997776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1636.67
//
Query:       CCG91512.1  [L=475]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3198.42
//
Query:       CCG91513.1  [L=214]
Description: Dethiobiotin synthetase (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-28   98.0   0.0    7.5e-28   97.7   0.0    1.1  1  AAA_26    AAA domain
     0.0019   18.2   0.0     0.0034   17.4   0.0    1.4  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
  ------ inclusion threshold ------
      0.071   12.4   0.1       0.23   10.7   0.1    1.8  2  DUF1611   Domain of unknown function (DUF1611_C) P-loop domai


Domain annotation for each model (and alignments):
>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   1.3e-31   7.5e-28       2     184 ..       2     189 ..       1     192 [. 0.89

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 1.3e-31
      AAA_26   2 tifvtgtdtgvGKTvvslgLvralkrkgvkvgyfKPiqtgieededselikellgldqtyelpeplalsaplspelaarqegedidlekiv...kelek 97 
                 t+f+tgtdtgvGKT+ s  Lv++++ kg+ +  +KPi+tg +  ed+  + e+ +  ++ + ++p+ + +p++p +aa++eg+ i+l ++     ++  
  CCG91513.1   2 TVFITGTDTGVGKTAFSYELVKYWRTKGYDAIGLKPISTGGR--EDAIKLWEASDRRTSLDNLNPFYFPEPMAPAIAAELEGKFIHLMDVQkaiVHMVG 98 
                 89***************************************7..777778889999999***********************99996555544477888 PP

      AAA_26  98 dadivvVEGagglgvpiteellnadiaknlgapvilVargglgtinqllltiealrqknvrvlGvilNkvrnp....envetlekksgipv 184
                    +v +EG+gg ++p++++ l  d+++ l +pv++Va+++lg +n++ ltie     ++ ++G+ilN+ ++      ++e +e+  +ip+
  CCG91513.1  99 SFSHVAIEGIGGWLTPLSRKWLLRDLVQILHCPVVIVAHTRLGYLNHTFLTIENILAADISIKGLILNQYASLgvvpMAIELIETRYNIPI 189
                 99******************************************************************96554333236777776666665 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.7e-07    0.0034       1     107 [.       3     188 ..       3     194 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.7e-07
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE.EEESSCCCCHHTTEB-HHHH............................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx............................................ RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvD.aDpqannlaileglendiep............................................ 54 
                 ++i++t  GvGKT ++  L ++   +g++ + ++   + +  +ai  +   d+++                                            
  CCG91513.1   3 VFITGTDTGVGKTAFSYELVKYWRTKGYDAIGLKpISTGGREDAIKLWEASDRRTsldnlnpfyfpepmapaiaaelegkfihlmdvqkaivhmvgsfs 101
                 689*****************************9988888888886555555555588889999999999999999999999999999999999999999 PP

                 ..................................CCHCCCHHHHHHCHCHHHH.....EEEEEEEEESS...-TTCHHHHHHHHHHCTS- CS
                 ..................................xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ..................................dlkrllellealgkkkall...lkiagvvlnrvdgeneetllkealeelkqrygvp 107
                                                      rl+ l +++ +  + l   + i+g++ln + +         a+e ++ ry++p
  CCG91513.1 102 hvaiegiggwltplsrkwllrdlvqilhcpvvivAHTRLGYLNHTFLTIENILaadISIKGLILNQYASL---GVVPMAIELIETRYNIP 188
                 9999999999999999999999999999998888555555555555555444466688889999998875...44445555555555655 PP

>> DUF1611  Domain of unknown function (DUF1611_C) P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   3.8e-05      0.23      15      44 ..       3      32 ..       1      41 [. 0.92
   2 ?   -1.7   0.0      0.24   1.5e+03     149     189 ..     150     190 ..     135     199 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.8e-05
     DUF1611 15 vlvvGTdcavGKrttaleleealeerGlka 44
                v++ GTd  vGK   ++el +  + +G++a
  CCG91513.1  3 VFITGTDTGVGKTAFSYELVKYWRTKGYDA 32
                99*************************997 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.24
     DUF1611 149 iealaakk.kvvgislNtknlseeeakealeeleeelglpvv 189
                 ie++ a+  ++ g+ lN+ +     +  a+e +e ++++p++
  CCG91513.1 150 IENILAADiSIKGLILNQYASL-GVVPMAIELIETRYNIPIA 190
                 5555555456777777776554.6677888888999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1489.75
//
Query:       CCG91514.1  [L=91]
Description: Zn-dependent hydrolase, glyoxylase family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-22   78.0   4.2    7.2e-22   77.7   4.2    1.1  1  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I
    9.7e-08   32.6   2.1    1.4e-07   32.1   2.1    1.2  1  Fer4_15   4Fe-4S single cluster domain
  ------ inclusion threshold ------
       0.01   16.0   1.7       0.05   13.7   1.7    1.9  1  Fer4_10   4Fe-4S dicluster domain
       0.02   15.0   2.4       0.14   12.4   3.2    1.8  2  Fer4_9    4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   4.2   1.6e-25   7.2e-22       1      57 [.      18      73 ..      18      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 1.6e-25
     Fer4_13  1 VDrdtCiacgaCvelaPdvFeeddeggasvvaeqptseeekadaeeAadaCPvesIg 57
                VD  +Ci+c++C+e+aP  F+++d+gg+s+v++qp+++ee+++++eA ++CPve+Ig
  CCG91514.1 18 VD-TQCIDCDLCRETAPANFKRNDDGGHSYVYKQPQTPEEEEQCREAKEGCPVEAIG 73
                89.9****************************************************8 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   2.1   3.2e-11   1.4e-07       6      64 ..      20      72 ..      17      73 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 3.2e-11
     Fer4_15  6 daCigcglCvaeapevfeldedglasvllddgeiaegevpddeeeaaqeAaraCPvdAI 64
                ++Ci c lC + ap  f+ ++dg +s + +      ++ +++eee+ +eA + CPv+AI
  CCG91514.1 20 TQCIDCDLCRETAPANFKRNDDGGHSYVYK------QPQTPEEEEQCREAKEGCPVEAI 72
                68********************99988874......8899******************9 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.7   1.1e-05      0.05       5      55 ..      18      67 ..      15      89 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
     Fer4_10  5 dddtCirCgkCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaC 55
                 d +Ci C  C++  Pa++++++  g     ++ ++ +e+ ++c +  e C
  CCG91514.1 18 VDTQCIDCDLCRETAPANFKRNDDGGHSYVYKQPQT-PEEEEQCREAKEGC 67
                5789*************9944444333333333333.22224444444444 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.2     3e-05      0.14       1      51 []      21      72 ..      21      72 .. 0.83
   2 ?    3.2   0.2     0.022        98       4      22 ..      59      77 ..      58      86 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
      Fer4_9  1 kCtgCgaCveaCpagvvvedaaerkarlraase....eaCigCgaCveaCpkgai 51
                +C++C+ C e  pa+  ++d+++    +++ +     e   +C++  e Cp +ai
  CCG91514.1 21 QCIDCDLCRETAPANFKRNDDGGHSYVYKQPQTpeeeE---QCREAKEGCPVEAI 72
                6**********************999999888786544...66677778887765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.022
      Fer4_9  4 gCgaCveaCpagvvvedaa 22
                +C++  e Cp +++ +d  
  CCG91514.1 59 QCREAKEGCPVEAIGDDGD 77
                5777778899888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.43
# Mc/sec: 637.15
//
Query:       CCG91515.1  [L=266]
Description: Pseudouridine synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-29  103.7   0.1    1.5e-29  103.2   0.1    1.2  1  PseudoU_synth_2  RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.1   8.4e-34   1.5e-29       2     160 .]      38     192 ..      37     192 .. 0.93

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 8.4e-34
  PseudoU_synth_2   2 lvvvnKPagvpvqpeak...dgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeee 92 
                      ++v+nK  g++v+p+     +   +   ++   s ++    ++++vhRLDk+tsG +++Ak++ea+++l  +f+ r+++K+Y++l+++  ++++
       CCG91515.1  38 VIVINKQRGIVVHPGCGhwsGTIVNGLLFHYGHSLPSVALHRPGIVHRLDKDTSGAMVIAKTEEALKALLWQFSTRRITKTYICLCKNRFPYQS 131
                      89***********9876776666666677777777889999***************************************************** PP

  PseudoU_synth_2  93 gaikkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhlaa 160
                       ++k+ i++  +   ++++++   +gk+++t+++ l        + +s +++++++Gr+hQiRvhla+
       CCG91515.1 132 FIYKSNIQR--HSTNRKKMSVHLTKGKESETQFSLLYAS-----SEASMLKCRPISGRTHQIRVHLAH 192
                      *********..88999999999**************999.....**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1855.32
//
Query:       CCG91516.1  [L=274]
Description: Uracil-DNA glycosylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-47  159.9   0.0    7.9e-47  159.1   0.0    1.3  1  UDG       Uracil DNA glycosylase superfamily
  ------ inclusion threshold ------
       0.13   12.8   1.7       0.13   12.8   0.2    1.8  2  COMP      Cartilage oligomeric matrix protein


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.1   0.0   8.8e-51   7.9e-47       1     154 [.      99     253 ..      99     254 .. 0.95

  Alignments for each domain:
  == domain 1  score: 159.1 bits;  conditional E-value: 8.8e-51
                 HHC-CTT-SEEEEESSTCHHHHHHSSSS.-STT--HHHHHHHCCCCCCCHHGCTEEEEESSS..........SECGCTTCCCCTCCHHHHHHHHHHHHS CS
         UDG   1 pgegppdakvvivGeaPgaeedatglpFsgragnllrkllneaglkrdleseqgvyitnvvkcrp......pgnrdtptsaeikacaplleeeiellkp 93 
                 +g+g+p +k+++vGeaPgaeed++g+pF+g+ag+ll k+++++gl+r     ++vyi+nv+kcrp      +gnr +pt++e++ c p+l ++i+l++p
  CCG91516.1  99 FGTGNPLSKLMFVGEAPGAEEDQQGEPFVGPAGQLLTKMIKAMGLSR-----DQVYIANVLKCRPdipkgqKGNR-KPTPEEMATCLPYLLSQIRLINP 191
                 699********************************************.....************97766656899.*********************** PP

                 SEEEEESHHHHHH.....HHHHSCESCCCSCT..SEEEEES-SSTTTTTTTTSHHHHHHHHHHHH CS
         UDG  94 rlivllGktaakall...geklgklrgklleak.irvlplphPsplnrnffksnpelkaeawedL 154
                 ++iv+lG+ta++ l+   g k++++rgk+++++   +++++hPs+l+ n    + ++k+++wed+
  CCG91516.1 192 KVIVALGATAYEGLTgkiGIKISEVRGKFIDFNgAFLIATYHPSYLLHN---PSLANKRKVWEDM 253
                 *************988888899**********99***************...9999999999886 PP

>> COMP  Cartilage oligomeric matrix protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   1.4e-05      0.13      29      45 .]      72      88 ..      68      88 .. 0.95
   2 ?   -3.0   0.1       1.2   1.1e+04      10      22 ..     134     146 ..     132     148 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
        COMP 29 kEisfLRntIeeCqaCg 45
                +E ++L+n +e+Cq C+
  CCG91516.1 72 QELNLLKNKVENCQYCQ 88
                8***************8 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.2
        COMP  10 LseltqllkeLre 22 
                 L+ ++++++  r+
  CCG91516.1 134 LTKMIKAMGLSRD 146
                 6666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2042.51
//
Query:       CCG91517.1  [L=637]
Description: ATP-dependent zinc metalloprotease FtsH 1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-67  226.1   0.1    4.4e-67  225.6   0.1    1.2  1  Peptidase_M41    Peptidase family M41
      8e-45  152.5   0.1      3e-44  150.6   0.0    2.0  2  AAA              ATPase family associated with various cellul
    1.1e-14   54.0   0.5    2.3e-14   52.9   0.5    1.6  1  AAA_lid_3        AAA+ lid domain
    2.2e-06   28.0   0.6    3.2e-05   24.3   0.0    2.5  2  FtsH_ext         FtsH Extracellular
    4.5e-05   22.8   0.1    0.00012   21.4   0.1    1.6  1  TIP49            TIP49 P-loop domain
    9.3e-05   22.4   0.0    0.00061   19.8   0.1    2.4  2  AAA_5            AAA domain (dynein-related subfamily)
    0.00018   21.9   2.8     0.0065   16.9   0.2    3.1  3  AAA_16           AAA ATPase domain
    0.00057   19.7   0.0     0.0018   18.0   0.0    1.8  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0011   19.1   0.2     0.0096   16.0   0.0    2.3  2  AAA_2            AAA domain (Cdc48 subfamily)
     0.0027   17.4   0.2     0.0062   16.3   0.0    1.6  1  IstB_IS21        IstB-like ATP binding protein
      0.003   17.8   1.2      0.046   14.0   0.1    2.9  2  AAA_22           AAA domain
      0.005   17.3   0.1      0.022   15.2   0.0    2.2  2  AAA_17           AAA domain
     0.0076   16.6   0.4      0.021   15.2   0.4    1.8  1  FumaraseC_C      Fumarase C C-terminus
     0.0084   16.3   0.0      0.027   14.6   0.0    1.9  1  AAA_33           AAA domain
  ------ inclusion threshold ------
       0.01   15.4   0.4      0.052   13.1   0.1    2.2  2  AAA_7            P-loop containing dynein motor region
       0.01   15.2   0.1      0.023   14.1   0.1    1.5  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.021   14.4   0.7      0.044   13.3   0.7    1.4  1  FANCI_S1         FANCI solenoid 1
      0.039   14.3   0.9        3.6    7.9   0.5    2.7  2  AAA_19           AAA domain
      0.064   13.8   0.4       0.31   11.6   0.1    2.4  2  AAA_18           AAA domain
      0.087   13.1   0.0       0.22   11.7   0.0    1.7  1  AAA_28           AAA domain
       0.12   12.1   0.0       0.24   11.1   0.0    1.5  1  Sigma54_activat  Sigma-54 interaction domain
       0.13   11.5   0.0       0.33   10.2   0.0    1.8  1  Zeta_toxin       Zeta toxin
       0.14   12.1   0.0       0.31   11.1   0.0    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.15   11.5   0.3       0.29   10.5   0.3    1.4  1  PhoH             PhoH-like protein
       0.29   11.7   1.9       0.55   10.8   0.1    2.2  2  ABC_tran         ABC transporter


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.6   0.1   6.2e-70   4.4e-67       1     191 []     429     618 ..     429     618 .. 0.98

  Alignments for each domain:
  == domain 1  score: 225.6 bits;  conditional E-value: 6.2e-70
                    XX--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS.-----------TSS--BHHHHHHHHHHHHHHHHHHHHHHHS-BGGGHHHHHHHH CS
  Peptidase_M41   1 rvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgq.alGltlslPeedklsltkeellarlavllGGraaEelifgevttGasnDlekat 95 
                    rv+seke++ vAyHE+GHalv+ +l++a+pv+K++i+PRg+ alG+tl+lP ++++ l+k+ell+r++v++GGraaEeli+++vttGa+nDle at
     CCG91517.1 429 RVLSEKERERVAYHEVGHALVAFYLEHAEPVRKISIVPRGRaALGYTLQLPASQQYLLSKSELLDRICVAMGGRAAEELIYKDVTTGAENDLEVAT 524
                    689**************************************9****************************************************** PP

                    HHHHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE-HHHHHHH CS
  Peptidase_M41  96 kiarkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreelealaeaLlekEtldaeeieel 191
                    +iar+mv+ +Gm +k G+ ++   +    f g +++  ke+s+eta++i+ e+++++ee+ye+ak+il+++ +el+++++ Ll kEtl++ee++++
     CCG91517.1 525 TIARQMVCLYGMGEKSGLSHYVPPQP--LFGGLDSSYLKECSNETARIIELEIEKILEENYEKAKSILQQHLKELQEVTTILLAKETLSGEEFKSI 618
                    ***********************887..8999*************************************************************986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.0   4.2e-47     3e-44       1     131 [.     216     348 ..     216     349 .. 0.97
   2 ?   -1.9   0.1       5.9   4.3e+03      24      61 ..     568     603 ..     558     609 .. 0.56

  Alignments for each domain:
  == domain 1  score: 150.6 bits;  conditional E-value: 4.2e-47
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vll+GppGtGKTllakava e++v+f++isgse+++++vg +++++r+lf +ak+ka p+i+fiDE+da++++r    +  s+e+e+++nqLl e+dg+
  CCG91517.1 216 VLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEMFVGVGAARVRDLFGQAKAKA-PCIIFIDELDAIGRQRgirIQVGSDEHEQTLNQLLVEMDGF 313
                 79******************************************************9.*****************99899******************* PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 + +e+ +iv++atnrp+ ld+allr gRfdr++ ++
  CCG91517.1 314 DPNEG-IIVLAATNRPEILDRALLRpGRFDRQVVVD 348
                 **866.*************************99775 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5.9
                 HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEE CS
         AAA  24 vefleisgsellskyvgesekkirelfkeakekakpsi 61 
                 ++++e++  ++l++  +++++ +++ +ke++e    +i
  CCG91517.1 568 ARIIELEIEKILEENYEKAKSILQQHLKELQEVT--TI 603
                 5677777777775555555555555555544443..44 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.5   3.3e-17   2.3e-14       1      43 [.     371     413 ..     371     418 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 3.3e-17
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedf 43 
                 d+++ke+A++T G+SGADla+l +eAallA rr+ + i+++d+
  CCG91517.1 371 DINFKEIAQATMGFSGADLANLLNEAALLAARRKSTCIEQKDL 413
                 89***************************************98 PP

>> FtsH_ext  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.4e-08   3.2e-05       4     107 ..      25     120 ..      22     122 .. 0.73
   2 ?    0.9   0.7       0.8   5.7e+02       1      20 [.     128     147 ..     128     178 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4.4e-08
    FtsH_ext   4 wlllallllllllslfggsgtgstkeisyseFledleqgnvekvvvqestisalirrptgdgvsttkkgnstttystptlgsvesleekLeealkskgv 102
                 +l+ +++ l+l+++  ++ ++ +  +i+yseFl++l+q+++ + ++ +++i      ++ +     k  ++ +   ++  ++v  ++++L++ l+++gv
  CCG91517.1  25 FLVQIGIALFLVWLWQESLHKATVSTIPYSEFLNKLNQKEIVECKITPDEIY-----GKML---IVKPEEKGKPPRIGLFSTVRVDDPDLVKRLQAAGV 115
                 56666666666666666***********************************.....3333...44444444444444444578888888888888888 PP

    FtsH_ext 103 dvess 107
                  + s+
  CCG91517.1 116 VYGSV 120
                 88776 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.8
    FtsH_ext   1 illwlllallllllllslfg 20 
                 il+ +++ +l+++l+++   
  CCG91517.1 128 ILFSWVVPILIFFLVWFALA 147
                 57777777777777777653 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   1.7e-07   0.00012      51      89 ..     214     250 ..     204     256 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.7e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevy 89 
                 ++vLl+Gp+gtGkt la a++ e  ++vpf ++sgse+ 
  CCG91517.1 214 KGVLLVGPPGTGKTLLAKAVAGE--AKVPFFSISGSEFV 250
                 89*******************98..57*********975 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   8.4e-07   0.00061       1      77 [.     215     284 ..     215     337 .. 0.76
   2 ?   -2.7   0.0       7.4   5.3e+03      12      37 ..     488     513 ..     487     516 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 8.4e-07
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEvera 77 
                 +vlLvGppGtgK+ la+ +a   + +++ + ++++ +    +g         + +d     +a+ ++i+++DE++ +
  CCG91517.1 215 GVLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEMFVGVGAA-------RVRDLFGQAKAKAPCIIFIDELDAI 284
                 59*******************999999999999976543333333.......3455555555667778888877765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7.4
                 HHHHHHHGGGGBS--EEEEE--TT-- CS
       AAA_5  12 Kselaerlaaalnreveyvqltrdtt 37 
                 Ksel +r++ a++ +  + ++++d t
  CCG91517.1 488 KSELLDRICVAMGGRAAEELIYKDVT 513
                 99999999999988888888888877 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2     9e-06    0.0065      18      48 ..     207     237 ..     191     254 .. 0.81
   2 ?    3.6   0.1      0.11        79     122     152 ..     260     301 ..     255     321 .. 0.70
   3 ?   -1.6   0.0       4.3   3.1e+03     116     134 ..     373     404 ..     338     431 .. 0.49

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 9e-06
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellral 48 
                 ++ +  p  vll+G++G+GK+ l+++++ ++
  CCG91517.1 207 ALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 237
                 455556799***************9998655 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.11
      AAA_16 122 llkrllallsrderplvlvlDdlq............wadeasl 152
                  +++l+ +++  + p ++++D+l+              de+ +
  CCG91517.1 260 RVRDLFGQAKA-KAPCIIFIDELDaigrqrgiriqvGSDEHEQ 301
                 56677778888.678*********6665555555544444444 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 4.3
      AAA_16 116 a.............srllellkrllallsrde 134
                                +l++ll++++ l++r++
  CCG91517.1 373 NfkeiaqatmgfsgADLANLLNEAALLAARRK 404
                 33333333333334444444444443333322 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.6e-06    0.0018      35      68 ..     215     248 ..     178     288 .. 0.73
   2 ?   -2.9   0.0       6.8   4.9e+03      21      38 ..     319     336 ..     315     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.6e-06
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPv 68 
                  vll+GpPG Gkt lak +a e +v + + sg  
  CCG91517.1 215 GVLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSE 248
                 69***********************998888764 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.8
      RuvB_N  21 ifieaakkreealdhvll 38 
                 i++ aa +r e ld  ll
  CCG91517.1 319 IIVLAATNRPEILDRALL 336
                 7889999******99998 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.3e-05    0.0096       6     103 ..     216     307 ..     213     312 .. 0.77
   2 ?   -0.3   0.2       1.4     1e+03      14      58 ..     585     624 ..     572     631 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.3e-05
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHH.HHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlv.srligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqil 103
                 +ll+gp g+Gkt+laka+a   +v    ++  +  se+ e   +   v +  +    g  +a+   i+++DE+d i +++ ++ +v +++  + L q+l
  CCG91517.1 216 VLLVGPPGTGKTLLAKAVAGEAKV----PFFSISGSEFVE---MFVGVgAARVRDLFGQAKAKAPCIIFIDELDAIGRQRGIRIQVGSDEHEQTLNQLL 307
                 6899******************98....************...33333033333344555556666************988888888777666666654 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.4
                 SSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHH CS
       AAA_2  14 vGktelakalaellfvkkekkliradaselleeeevehlvsrlig 58 
                   k++l++ l el++v      +++ a+e l +ee ++++++ + 
  CCG91517.1 585 KAKSILQQHLKELQEV-----TTILLAKETLSGEEFKSILDKVKN 624
                 4566777777777775.....888889999999999999988765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.7e-06    0.0062      49      95 ..     215     261 ..     210     285 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.7e-06
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarr 95 
                 +++l+Gp+G+GK+ la a++ ea    +s++     +++  + +ar 
  CCG91517.1 215 GVLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEMFVGVGAARV 261
                 799****************9998766666666666666666655555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   6.4e-05     0.046       8      29 ..     216     237 ..     213     256 .. 0.84
   2 ?    1.1   0.0       0.6   4.3e+02      87     111 ..     269     305 ..     256     326 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.4e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++++G++GtGKT+l++ ++ ++
  CCG91517.1 216 VLLVGPPGTGKTLLAKAVAGEA 237
                 589*************998776 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.6
      AAA_22  87 raravielliiDEaqhlr..s...........eealee 111
                 +a+a + ++ iDE + +   +           e+ l++
  CCG91517.1 269 KAKA-PCIIFIDELDAIGrqRgiriqvgsdehEQTLNQ 305
                 3333.599*******99665134444555333333443 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.1e-05     0.022       1     123 [.     219     338 ..     219     346 .. 0.72
   2 ?   -2.4   0.1       8.3   5.9e+03      52      80 ..     565     594 ..     555     610 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.1e-05
                 EE-TTSSHHHHHHHHHHHHTEEEEEH.HHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsa.Gdllreeakrgglakardemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldglpkevle 98 
                 +G+PG GK+ +++ ++ + +++++s  G+ + e+    g+a+ rd + +++ +  + +     ++i ++   +g+ +      +e ++ l +l +e+ +
  CCG91517.1 219 VGPPGTGKTLLAKAVAGEAKVPFFSIsGSEFVEMFVGVGAARVRDLFGQAKAKAPCIIFIDELDAIGRQ---RGIRI--QVGSDEHEQTLNQLLVEM-D 311
                 7**********************99889***********999999999888887776655555667664...34433..222345556677777776.5 PP

                 HH...SEEEEEE--HH.HHHHHHHHHT CS
      AAA_17  99 elkp.daiilleadpe.eilerrlkdr 123
                  ++p + ii+l a +  eil+r l + 
  CCG91517.1 312 GFDPnEGIIVLAATNRpEILDRALLRP 338
                 666644455555444338888887764 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 8.3
                 HHHHHHHHHHHHHHHHHH.HSSEEEEEE-S CS
      AAA_17  52 eekkelqkeaaekiaeea.kkkgvlvdghp 80 
                 +e+ ++ ++ +eki ee+ +k + ++  h 
  CCG91517.1 565 NETARIIELEIEKILEENyEKAKSILQQHL 594
                 455556666666666666455556666665 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.4     3e-05     0.021      11      48 ..     583     620 ..     583     623 .. 0.97

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3e-05
                  HHHHHHHHHHHHHHT--HHHHHHHTT-.-HHHHHHHT- CS
  FumaraseC_C  11 YekAakIAkeAlkegktlreavlelgllteeeldelld 48 
                  YekA +I ++ lke + +  + l+++ l+ ee++ +ld
   CCG91517.1 583 YEKAKSILQQHLKELQEVTTILLAKETLSGEEFKSILD 620
                  ************************************98 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.8e-05     0.027       2      29 ..     216     245 ..     216     297 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.8e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avlls 29 
                 vllvG+pG+GK+ la+ ++ + +  ++ +s
  CCG91517.1 216 VLLVGPPGTGKTLLAKAVAGEAKvpFFSIS 245
                 799***************988775555555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   7.3e-05     0.052      34     109 ..     214     281 ..     205     287 .. 0.64
   2 ?   -3.3   0.0       7.7   5.5e+03      75      94 ..     564     583 ..     561     588 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.3e-05
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpggk.klvvFvDDl 109
                 k vllvGp GtGKt+++k +  + +        + f +  s +++ +++      r ++++g ++ k  +++F+D+l
  CCG91517.1 214 KGVLLVGPPGTGKTLLAKAVAGEAK--------VPFFS-ISGSEFVEMFVGVGAARVRDLFGQAKAKaPCIIFIDEL 281
                 789**************99887766........33332.23344444555555555556666443331466666665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.7
       AAA_7  75 anqlqdiiesklekrrkgvy 94 
                 +n++ +iie ++ek  +++y
  CCG91517.1 564 SNETARIIELEIEKILEENY 583
                 78999999999999888777 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   3.1e-05     0.023      25      43 ..     216     234 ..     205     240 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +llvGppG+GKt+lak+++
    CCG91517.1 216 VLLVGPPGTGKTLLAKAVA 234
                   89*************9975 PP

>> FANCI_S1  FANCI solenoid 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.7   6.2e-05     0.044      43      97 ..     566     618 ..     559     622 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.2e-05
    FANCI_S1  43 hlvelvelcldaikegdakfgkvlelLPkvLsvlaeeetlnaekgelsGeeyksq 97 
                 + ++++el +++i e++    k +++L + L++l+e  t+   k++lsGee+ks 
  CCG91517.1 566 ETARIIELEIEKILEEN--YEKAKSILQQHLKELQEVTTILLAKETLSGEEFKSI 618
                 56789999999999998..778999****************************96 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.5     0.005       3.6      11      30 ..     214     233 ..     205     240 .. 0.78
   2 ?    3.7   0.0     0.099        71      43      78 ..     492     573 ..     467     624 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.005
      AAA_19  11 kvllvtaGpGtGKTrvlkhi 30 
                 k +l++++pGtGKT + k++
  CCG91517.1 214 KGVLLVGPPGTGKTLLAKAV 233
                 457899********877665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.099
      AAA_19  43 eeillvaftgrAakelrerlaalgae.....atTiHrlal..........................................l 78 
                  + ++va+ grAa+el  +  + gae     atTi r  +                                          l
  CCG91517.1 492 LDRICVAMGGRAAEELIYKDVTTGAEndlevATTIARQ-MvclygmgeksglshyvppqplfggldssylkecsnetariieL 573
                 55689**********96654445555679999999987.43777777777777777777777777776666666555555551 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00043      0.31       1      21 [.     216     236 ..     216     340 .. 0.88
   2 ?   -2.2   0.0       7.6   5.5e+03      63      86 ..     578     597 ..     553     622 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00043
      AAA_18   1 IlltGtpGvGKttlakeLskr 21 
                 +ll G+pG+GKt lak+++ +
  CCG91517.1 216 VLLVGPPGTGKTLLAKAVAGE 236
                 799*************99755 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 7.6
      AAA_18  63 aleenssaleegknlvidghlael 86 
                 +leen   +e++k+ ++++hl el
  CCG91517.1 578 ILEEN---YEKAKS-ILQQHLKEL 597
                 22332...334444.555555444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00031      0.22       2      33 ..     216     248 ..     215     273 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00031
      AAA_28   2 ivitGgestGKTtlleaLa.argypvvpEaare 33 
                 + ++G+++tGKT l++a a + ++p +  ++ e
  CCG91517.1 216 VLLVGPPGTGKTLLAKAVAgEAKVPFFSISGSE 248
                 689****************54477765444444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00034      0.24      19      45 ..     210     236 ..     192     282 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
                      CTSSS-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat  19 aktdlsvlitGesGtGKellaraihea 45 
                      ak +  vl++G  GtGK+lla+a+  +
       CCG91517.1 210 AKIPKGVLLVGPPGTGKTLLAKAVAGE 236
                      566788****************98654 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00046      0.33      14      40 ..     211     237 ..     179     253 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00046
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdel 40 
                 + Pk +ll+G pG GK+ la++++ e 
  CCG91517.1 211 KIPKGVLLVGPPGTGKTLLAKAVAGEA 237
                 6699******************99875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00043      0.31       5      45 ..     203     239 ..     199     250 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00043
                 HHHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE   5 eetealgkklakalgdvilLeGdLGaGKTtlvrglakalgv 45 
                 +  +alg+k+ k     +lL G+ G+GKT l++++a + +v
  CCG91517.1 203 SRYKALGAKIPK----GVLLVGPPGTGKTLLAKAVAGEAKV 239
                 556677777766....8*****************9988766 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   0.00041      0.29      22      41 ..     216     235 ..     204     239 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00041
                 EEEE--TTSSTTHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalav 41 
                 v  +Gp GtGKt+la a+a 
  CCG91517.1 216 VLLVGPPGTGKTLLAKAVAG 235
                 6789***********99985 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00076      0.55      14      36 ..     216     238 ..     207     246 .. 0.89
   2 ?   -1.7   0.1       5.4   3.9e+03      48      95 ..     574     625 ..     560     633 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00076
                 EEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllk 36 
                 v +vG+ G+GK+ L+k++ag+ k
  CCG91517.1 216 VLLVGPPGTGKTLLAKAVAGEAK 238
                 789****************9875 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 5.4
                 EGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH...HHHTCHHHHHHHSTTG CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx...xxxxxxxxxxxxxxxx RF
    ABC_tran  48 dlkeqeleslrkeigvlpqe.pqlfpeltvren...esdeeiekalsklglk 95 
                 +++++ +e ++k  ++l+q+ ++l++ +t+       s ee++ +l+k++++
  CCG91517.1 574 EIEKILEENYEKAKSILQQHlKELQEVTTILLAketLSGEEFKSILDKVKNQ 625
                 4444555777777777777755555555533223446666677777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1065  (0.059401); expected 358.6 (0.02)
Passed bias filter:                      851  (0.047465); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.42
# Mc/sec: 4509.50
//
Query:       CCG91518.1  [L=285]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1236  (0.0689386); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 1939.23
//
Query:       CCG91519.1  [L=111]
Description: Thiol-disulfide isomerase or thioredoxin [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-31  107.4   0.1    3.6e-31  107.2   0.1    1.0  1  Thioredoxin      Thioredoxin
    5.4e-08   33.1   0.1    4.2e-06   27.0   0.0    2.2  2  Thioredoxin_8    Thioredoxin-like
    7.8e-08   32.7   0.0    1.1e-07   32.3   0.0    1.3  1  Thioredoxin_2    Thioredoxin-like domain
    5.2e-05   23.2   0.0    5.7e-05   23.0   0.0    1.1  1  TraF             F plasmid transfer operon protein
    7.2e-05   22.6   0.0    8.2e-05   22.4   0.0    1.1  1  Thioredoxin_9    Thioredoxin
    0.00032   20.6   0.0    0.00035   20.5   0.0    1.2  1  AhpC-TSA         AhpC/TSA family
    0.00038   20.2   0.1    0.00047   19.9   0.1    1.3  1  Redoxin          Redoxin
    0.00042   19.8   0.0    0.00048   19.6   0.0    1.1  1  OST3_OST6        OST3 / OST6 family, transporter family
    0.00047   20.1   0.0    0.00075   19.4   0.0    1.3  1  HyaE             Hydrogenase-1 expression protein HyaE
    0.00087   19.4   0.1     0.0019   18.3   0.1    1.6  2  Thioredoxin_7    Thioredoxin-like
     0.0034   16.4   0.0     0.0036   16.3   0.0    1.1  1  Phosducin        Phosducin
     0.0043   16.8   0.0     0.0048   16.7   0.0    1.1  1  DIM1             Mitosis protein DIM1
     0.0045   16.6   0.0      0.014   15.0   0.0    1.8  1  DUF953           Eukaryotic protein of unknown function (DUF9
     0.0052   16.8   0.0     0.0096   15.9   0.0    1.6  2  Thioredoxin_3    Thioredoxin domain
     0.0097   16.1   0.1      0.021   15.0   0.0    1.6  1  Glutaredoxin     Glutaredoxin
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.014   15.3   0.0    1.3  1  Thioredoxin_6    Thioredoxin-like domain
      0.023   14.4   0.0      0.036   13.8   0.0    1.5  1  KaiB             KaiB domain
      0.067   13.5   0.0       0.42   10.9   0.0    2.1  1  IF3_N            Translation initiation factor IF-3, N-termin
      0.068   13.2   0.0      0.093   12.8   0.0    1.2  1  TrbC_Ftype       Type-F conjugative transfer system pilin ass
      0.098   12.5   0.0      0.098   12.5   0.0    1.1  1  COPIIcoated_ERV  Endoplasmic reticulum vesicle transporter
       0.11   12.9   0.0       0.18   12.2   0.0    1.5  1  DUF836           Glutaredoxin-like domain (DUF836)


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.1   4.2e-34   3.6e-31       3     102 ..       7     106 ..       5     107 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.2 bits;  conditional E-value: 4.2e-34
                  EESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHH CS
  Thioredoxin   3 lvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaaf 100
                  +++t+++Fe+ev k+ + v+v+F+A+wCg+C +l+P+l++la+el +k k++kv+vd++++la +y++++iPtl++fk g+   k  g  +k+++ ++
   CCG91519.1   7 KSITSKEFENEVIKSPQVVVVDFWAEWCGPCHMLSPVLDELAKELDGKTKFVKVNVDQEPNLAYQYSIQSIPTLLIFKGGQIKGKQIGVTSKNQILNK 104
                  67899******************************************************************************************999 PP

                  HH CS
  Thioredoxin 101 lk 102
                  +k
   CCG91519.1 105 IK 106
                  97 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0     5e-09   4.2e-06       2      46 ..      23      65 ..      22      71 .. 0.93
   2 ?    4.7   0.0     0.045        38      74      90 ..      68      84 ..      64      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 5e-09
                   SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS- CS
  Thioredoxin_8  2 kvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkk 46
                   +vv++ f+a+wc pc    p l+el ++l    k ++v v++d++
     CCG91519.1 23 QVVVVDFWAEWCGPCHMLSPVLDELAKELD--GKTKFVKVNVDQE 65
                   69***************************9..9**********86 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.045
                   HTT-S--TT-SEEEEE- CS
  Thioredoxin_8 74 lkkkynvkaiPtlvvld 90
                   l+ +y +++iPtl++ +
     CCG91519.1 68 LAYQYSIQSIPTLLIFK 84
                   6779*********9976 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.2e-10   1.1e-07       6     105 ..      23     101 ..      18     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.2e-10
  Thioredoxin_2   6 kpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgkeivarlpGyvp 101
                    + v+v+f++++C+ C+ l  +l+el    +      l+ + +++ v+++++++             la++y +++ Pt++++ g +i  +  G ++
     CCG91519.1  23 QVVVVDFWAEWCGPCHMLSPVLDEL---AKE-----LDGKTKFVKVNVDQEPN-------------LAYQYSIQSIPTLLIFKGGQIKGKQIGVTS 97 
                    5799********************9...666.....89997788888877776.............57**********887777746666677777 PP

  Thioredoxin_2 102 aeel 105
                    ++++
     CCG91519.1  98 KNQI 101
                    7665 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   6.7e-08   5.7e-05     136     223 ..      29     105 ..      11     106 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 6.7e-08
        TraF 136 FyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpksqkvvpvaaGllsldeleeri 223
                 F ++ c+ c++++p+l+++a++   ++++V+v+  + p+l+          +++++++P+l++++  +  ++    G++s ++++++i
  CCG91519.1  29 FWAEWCGPCHMLSPVLDELAKELDGKTKFVKVNVDQEPNLAY---------QYSIQSIPTLLIFKGGQ--IKGKQIGVTSKNQILNKI 105
                 77888******************9999999888888887888.........*************9985..444456899999999988 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   9.6e-08   8.2e-05      39     106 ..      19      85 ..       2     101 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 9.6e-08
                    --S-EEEEE.E--TT-HHHHHHHHHHHHHHHH-TTEEEEEE..-HHHHHHHTTTTTT-SS--SSEEEEE-T CS
  Thioredoxin_9  39 iekklkilv.ltedwCgDaavnvPvlakiaelnpnievkil..lrdenlelmdqyltngaraiPtliilde 106
                    i+ ++ ++v + ++wCg + +  Pvl+++a++  + ++k++    d++++l  qy+    ++iPtl+i++ 
     CCG91519.1  19 IKSPQVVVVdFWAEWCGPCHMLSPVLDELAKEL-DGKTKFVkvNVDQEPNLAYQYS---IQSIPTLLIFKG 85 
                    3333333334789*****************877.5566665115677777777775...59******9974 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   4.1e-07   0.00035      25      77 ..      21      72 ..       4     102 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.1e-07
                T.SEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHH CS
    AhpC-TSA 25 g.kpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfi 77
                  ++vv+ f+++ wc +C    p l +l++e++  + + + v+vd++ +++ + 
  CCG91519.1 21 SpQVVVVDFWAE-WCGPCHMLSPVLDELAKELD-GKTKFVKVNVDQEPNLAYQY 72
                3489********.*******************9.57899*****9998776555 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   5.5e-07   0.00047      30      76 ..      24      69 ..       9     104 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 5.5e-07
                EEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHH.H CS
     Redoxin 30 kvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndaf.v 76
                +vvv f++  +c++C    p l++la++  ++  ++v v++d+++  +
  CCG91519.1 24 VVVVDFWAE-WCGPCHMLSPVLDELAKE-LDGKTKFVKVNVDQEPNlA 69
                68999****.***************999.9999********9998752 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.6e-07   0.00048      46     115 ..      34      91 ..      20     110 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.6e-07
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpkeskkkd 115
                 C +C+ + p ++ +ak  + +         F+kv++d+ +++  ++ ++s+P ll+f+  +      k +
  CCG91519.1  34 CGPCHMLSPVLDELAKELDGKT-------KFVKVNVDQEPNLAYQYSIQSIPTLLIFKGGQ-I----KGK 91 
                 99**************999994.......5***************************9832.2....222 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   8.8e-07   0.00075      49      98 ..      43      91 ..      37     100 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 8.8e-07
                HHHHHHCT-TTS-EEEEEETHHHHHHHHHCCT-TSSSEEEEEETTEEEEE CS
        HyaE 49 vlpEllkaFpnalraavvadreqeealaerfgvlktPsllflrdgeylgv 98
                vl El k+    ++ + v+  +qe +la ++ ++  P+ll++++g++ g 
  CCG91519.1 43 VLDELAKELDGKTKFVKVN-VDQEPNLAYQYSIQSIPTLLIFKGGQIKGK 91
                899*********9999999.9************************99886 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.6   2.2e+03      29      45 ..       8      24 ..       4      26 .. 0.81
   2 !   18.3   0.1   2.2e-06    0.0019      20      82 ..      25      84 ..      17      85 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.6
                   -HHHHHHHHHHHH-HHH CS
  Thioredoxin_7 29 cftCqalerdflsdeev 45
                   + t++ +e ++++++ v
     CCG91519.1  8 SITSKEFENEVIKSPQV 24
                   67899999999999877 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 2.2e-06
                   EEEEE--TT-HHHHHHHHHHHH-HHHHH.HH..HT-EEEEESS--S-GGG.-TT---SSEEEEE- CS
  Thioredoxin_7 20 vlvffgaswcftCqalerdflsdeevkaala..ekfvllrvdvterdanileldeqgvPvvafld 82
                   v v+f a+wc++C+ l  ++ +    k+ l+   kfv ++vd + + a  +++  q +P++++++
     CCG91519.1 25 VVVDFWAEWCGPCHMLSPVLDEL--AKE-LDgkTKFVKVNVDQEPNLA--YQYSIQSIPTLLIFK 84
                   789**************999876..555.5511555555555555554..3544578***99985 PP

>> Phosducin  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.3e-06    0.0036     148     220 ..      24      98 ..       4     106 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.3e-06
                 EEEEEEE-TTSTTHHHHHHHHHHHHHH-T.TSEEEEEEHHHH.--TTSS-TTT-SEEEEEETTEEEEEETTGGGG CS
   Phosducin 148 livvhiyedgvkgtealnssliclaaeyp.tvkfckvkasvi.gasdrfsrdvlpallvykagellsnfvrvtdq 220
                 ++vv  + +    ++ l   l  la e     kf kv+  +    + ++s + +p+ll++k+g++ +  + vt +
  CCG91519.1  24 VVVVDFWAEWCGPCHMLSPVLDELAKELDgKTKFVKVNVDQEpNLAYQYSIQSIPTLLIFKGGQIKGKQIGVTSK 98 
                 56777888888888889999999999975378*****98765156889**********************99964 PP

>> DIM1  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.6e-06    0.0048      18     105 ..      20     107 ..       5     110 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.6e-06
                 -SSSEEEEEEE-TT-HHHHHHHHHHHHHHHHTTTTEEEEEEETTT--TTSCCCTT-SSSEEEEEETTEEEE.EE-SSS--SSB-S---- CS
        DIM1  18 eeerlvviRFGrdedaeClklDelLakiaeklknfaviylvdidevpdfnkmyeledpvtilffyrnkhmk.vDfgtgdnnKlnfvled 105
                 ++ ++vv+ F  ++   C  l  +L + a++l   +++  v++d+ p++   y +++  t+l+f ++ ++k   +g + +n++   ++d
  CCG91519.1  20 KSPQVVVVDFWAEWCGPCHMLSPVLDELAKELDGKTKFVKVNVDQEPNLAYQYSIQSIPTLLIF-KGGQIKgKQIGVTSKNQILNKIKD 107
                 3568****************************************************99999999.666665245677777666666655 PP

>> DUF953  Eukaryotic protein of unknown function (DUF953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.6e-05     0.014      36     100 ..      32      87 ..       5     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-05
                 BSSHHHHHHHHHHHHHHHH-SS-EEEEEEE---HHHHT-TTSHHHH..TS---SSSEEEEETSS- CS
      DUF953  36 sWCPdCvkaepvieealkeapedvklvrvdvGdrevWkdpanpfRkdpklkltgvPtLlrwkgkk 100
                  WC  C    pv+ e  ke+   +k+v+v+v +     +p+  +     ++++ +PtLl +kg +
  CCG91519.1  32 EWCGPCHMLSPVLDELAKELDGKTKFVKVNVDQ-----EPNLAYQ----YSIQSIPTLLIFKGGQ 87 
                 5*****************************975.....4666664....5899999999998763 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         3   2.5e+03      44      54 ..      15      26 ..       5      35 .. 0.66
   2 !   15.9   0.0   1.1e-05    0.0096      10      56 ..      34      83 ..      23     106 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3
                   HCT-SSSSEE.E CS
  Thioredoxin_3 44 kygVmsvPal.v 54
                   +++V++ P++ v
     CCG91519.1 15 ENEVIKSPQVvV 26
                   566777788744 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.1e-05
                   STTCHHHHHHHHHHCHCCTCECEEECC..TTHHHH.HHCT-SSSSEEECT CS
  Thioredoxin_3 10 CakCpklekavkeaaaekgikaevekv..tdfeei.ekygVmsvPalvid 56
                   C  C+ l+ ++ e+a+e++ k +++kv   + +++  +y ++s+P+l+i 
     CCG91519.1 34 CGPCHMLSPVLDELAKELDGKTKFVKVnvDQEPNLaYQYSIQSIPTLLIF 83
                   999***************888877666546777778***********884 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.5e-05     0.021       4      40 ..      29      71 ..      24      87 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.5e-05
                  EESTSSHHHHHHHHHHHHTT......GGEEEEEGCCSHHHHHH CS
  Glutaredoxin  4 ftkptCpyCkkakrlLkelg......vkfeeidvdkdeeiree 40
                  f   +C+ C++   +L+el        kf  ++vd+++++  +
    CCG91519.1 29 FWAEWCGPCHMLSPVLDELAkeldgkTKFVKVNVDQEPNLAYQ 71
                  5558**************9955555555*********965544 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   1.6e-05     0.014     116     159 ..      43      84 ..       4     106 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-05
                    HHHHHHHHTTTT-EEEEEETTGGHHHHHHTT--GGG-SEEEEEE CS
  Thioredoxin_6 116 aiekvakefkdkinfaladaksfkrpleylglsssdlPvivivd 159
                    ++ ++ake+ +k++f+ +++++ +++  ++ ++  ++P++ i++
     CCG91519.1  43 VLDELAKELDGKTKFVKVNVDQEPNLAYQYSIQ--SIPTLLIFK 84 
                    5699*****************888888888666..*****9987 PP

>> KaiB  KaiB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.3e-05     0.036      22      56 ..      48      81 ..      38     106 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.3e-05
                CCCHCTTTEEEEEEETTTSHCHHCCTCEESCCCCC CS
        KaiB 22 eeedlgfqyeLqvvdvleqPelaeedrlvatPaLi 56
                ++e l+++ +   v+v ++P+la +++++ +P+L 
  CCG91519.1 48 AKE-LDGKTKFVKVNVDQEPNLAYQYSIQSIPTLL 81
                444.5556666668*******************96 PP

>> IF3_N  Translation initiation factor IF-3, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00049      0.42       2      37 ..      16     110 ..      15     111 .] 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00049
                 TTS--SSEEEEE-SSS...........................................................-EEEEEEHHHHHHHHHHHTS CS
       IF3_N   2 NeqIrarevrlvdedG...........................................................eqlGvistreAlrlaeekgl 37 
                 Ne I+ ++v +vd                                                              +q+Gv s++++l+ ++++++
  CCG91519.1  16 NEVIKSPQVVVVDFWAewcgpchmlspvldelakeldgktkfvkvnvdqepnlayqysiqsiptllifkggqikgKQIGVTSKNQILNKIKDAEM 110
                 88888888888883333445777777777777777888888888888888888888888888888888888888899*************99986 PP

>> TrbC_Ftype  Type-F conjugative transfer system pilin assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00011     0.093      46      92 ..      49      97 ..      34     108 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
  TrbC_Ftype 46 klleeemekasvqid..PllFrqfkitaVPalvlaeedkaseeddecaa 92
                k l  +++ ++v++d  P+l  q++i+++P+l + ++ + + ++ ++++
  CCG91519.1 49 KELDGKTKFVKVNVDqePNLAYQYSIQSIPTLLIFKGGQIKGKQIGVTS 97
                33333444455555444*****************999888776555555 PP

>> COPIIcoated_ERV  Endoplasmic reticulum vesicle transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011     0.098     115     170 ..      48     107 ..       7     111 .] 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
  COPIIcoated_ERV 115 knPLdgtk.....keeeekalmfqYflkvvptkyekldkkkietnqysvtehersleggkd 170
                       + Ldg +     + ++e +l +qY ++ +pt   + ++ +i+ +q  vt++++ l++ kd
       CCG91519.1  48 AKELDGKTkfvkvNVDQEPNLAYQYSIQSIPTLLIFKGG-QIKGKQIGVTSKNQILNKIKD 107
                      4558888778888667899*****************987.6***********999987655 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00021      0.18       8      55 ..      32      82 ..      26     106 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00021
                TT-HHHHHHHHHHHHHCCCTT..EEEEEEETTT-CCCHCCCC.TTTTEEEE CS
      DUF836  8 pgChlCeqakekLkelkleeg..leleviDIakdeeleakYg.leipvlal 55
                + C+ C+ ++ +L el++e +   + ++++++++++l  +Y  + ip l++
  CCG91519.1 32 EWCGPCHMLSPVLDELAKELDgkTKFVKVNVDQEPNLAYQYSiQSIPTLLI 82
                56*************766666669************999997345676655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 732.99
//
Query:       CCG91520.1  [L=271]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.4   2.8       0.19   11.5   0.8    2.5  2  DUF3953   Protein of unknown function (DUF3953)


Domain annotation for each model (and alignments):
>> DUF3953  Protein of unknown function (DUF3953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.8   1.1e-05      0.19      17      36 ..      35      54 ..      32      55 .. 0.93
   2 ?   -1.1   0.0     0.094   1.7e+03      20      28 ..      83      91 ..      80      94 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.1e-05
     DUF3953 17 fkkenkfsGillilaalfvl 36
                +kk+++f  il++la+lf+l
  CCG91520.1 35 IKKKETFICILFFLASLFSL 54
                8*****************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.094
     DUF3953 20 enkfsGill 28
                e+k sG+++
  CCG91520.1 83 EKKLSGFFV 91
                699999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1862.19
//
Query:       CCG91521.1  [L=444]
Description: DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-67  225.4   0.0    4.9e-67  224.8   0.0    1.3  1  Sigma54_activat  Sigma-54 interaction domain
    1.1e-22   80.6   0.0    3.7e-22   78.9   0.0    1.9  2  Sigma54_activ_2  Sigma-54 interaction domain
    1.6e-22   79.8   0.2    5.3e-22   78.1   0.0    2.0  2  Response_reg     Response regulator receiver domain
    1.2e-12   47.4   4.4      4e-11   42.5   4.4    2.6  2  HTH_8            Bacterial regulatory protein, Fis family
    2.7e-07   30.7   0.0    7.6e-07   29.2   0.0    1.8  1  AAA_5            AAA domain (dynein-related subfamily)
    8.7e-07   28.5   0.3     0.0085   15.5   0.0    2.7  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
    3.6e-06   27.4   0.3    9.3e-06   26.1   0.0    1.8  2  AAA              ATPase family associated with various cellul
    0.00028   20.7   0.0     0.0017   18.2   0.0    2.1  2  Phage_NinH       Phage NinH protein
     0.0092   16.4   0.0      0.024   15.0   0.0    1.8  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.028   13.9   0.0      0.075   12.5   0.0    1.7  2  AAA_7            P-loop containing dynein motor region
      0.034   13.3   0.0       0.14   11.2   0.0    1.9  1  MCM              MCM P-loop domain
       0.12   12.7   0.1         31    4.9   0.1    2.9  3  AAA_19           AAA domain
       0.15   12.0   0.0       0.67    9.9   0.0    2.1  2  Phage-MuB_C      Mu B transposition protein, C terminal


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.8   0.0   3.6e-70   4.9e-67       1     168 []     134     301 ..     134     301 .. 0.99

  Alignments for each domain:
  == domain 1  score: 224.8 bits;  conditional E-value: 3.6e-70
                      ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTT CS
  Sigma54_activat   1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadg 94 
                      liges+ ++++ ++i  +a++d++vli+Ge+GtGKel+a+aih++s+r  +pf+avncaaipe l+ese+FGh kG+FtGA +++kG+f +a+g
       CCG91521.1 134 LIGESRPMRRVQKTIGFAAASDCPVLIVGETGTGKELVAKAIHRHSSRGMGPFIAVNCAAIPEMLFESEFFGHLKGSFTGALRDRKGKFLEASG 227
                      699******************************************************************************************* PP

                      SEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEEE CS
  Sigma54_activat  95 GtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnvieie 168
                      GtlfLDei+e+pl++Q+kLlrvl e++++++Gs+++ +vdvri+aatn++l + v++gkfredL+yr++v++ie
       CCG91521.1 228 GTLFLDEIAEMPLAMQAKLLRVLSEKTITPIGSETTYSVDVRIVAATNKNLLDLVSKGKFREDLLYRIQVLQIE 301
                      ***********************************************************************995 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.1   5.6e+03      60      79 ..      33      52 ..      20      98 .. 0.62
   2 !   78.9   0.0   2.7e-25   3.7e-22       1     138 []     135     305 ..     135     305 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.1
                     -HHHHHHHTTTSEEEEEE-T CS
  Sigma54_activ_2 60 lpldlleqakggtLylkdia 79
                      p +++e ak++ L++ d++
       CCG91521.1 33 DPNEVMELAKDVDLIFLDLK 52
                     56777777777777776664 PP

  == domain 2  score: 78.9 bits;  conditional E-value: 2.7e-25
                      X---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-HHHHHHH.......................TTTS CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklpldlleq.......................akgg 71 
                      +g+s+++ + ++++  aa+s  pv+++Ge G+gkelvA+++h  s++ + +f+  ++a++p  l+e+                       a+gg
       CCG91521.1 135 IGESRPMRRVQKTIGFAAASDCPVLIVGETGTGKELVAKAIHRHSSRGMGPFIAVNCAAIPEMLFESeffghlkgsftgalrdrkgkfleASGG 228
                      79***********************************************************777776666666666666666666666668*** PP

                      EEEEEE-TT--HHHHHHHHHHHHH..........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  72 tLylkdiadlskaeqkeLlellak..........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      tL+l +ia+++ a q++Ll +l +              ++r+V+++ k+l  l+ +g+f e Ll+++  l++++P+L
       CCG91521.1 229 TLFLDEIAEMPLAMQAKLLRVLSEktitpigsetTYSVDVRIVAATNKNLLDLVSKGKFREDLLYRIQVLQIELPAL 305
                      *******************************87644789************************************98 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   3.8e-25   5.3e-22       1     111 [.       4     111 ..       4     112 .. 0.97
   2 ?   -2.4   0.0       3.8   5.2e+03      72     110 ..     256     294 ..     240     296 .. 0.68

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 3.8e-25
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +livdDd ++r ++++ + + gy +  e++d++e++el+k  +vdli+lD+++ + dGl ll+++    +++pv+ilta s++ +++ea+k ga+d+
    CCG91521.1   4 ILIVDDDNAFRYVFSKTIHSLGY-SALETADPNEVMELAK--DVDLIFLDLKLKEHDGLLLLEKLCSSCQHPPVVILTAFSSSFNTIEAMKRGAFDH 97 
                   8**********************.9999*********986..78***************************************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   lsKp++++e+++ +
    CCG91521.1  98 LSKPIKRQEIKEVI 111
                   **********9987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.8
                   SEEEEEESSTSHHHHHHHHHCTESEEEESSG-HHHHHHH CS
  Response_reg  72 lpviiltahseeedavealkagaddflsKpfdpeeLlka 110
                   +p+   t++s +  +v+a + +  d +sK   +e+Ll +
    CCG91521.1 256 TPIGSETTYSVDVRIVAATNKNLLDLVSKGKFREDLLYR 294
                   566666777777777888888888888887666666655 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.12   1.7e+02       7      18 ..     108     119 ..     107     121 .. 0.89
   2 !   42.5   4.4   2.9e-14     4e-11       3      42 .]     399     438 ..     397     438 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.12
                 HHHHHHHHHHTT CS
       HTH_8   7 kelIeaALertg 18 
                 ke+Ie AL+r+ 
  CCG91521.1 108 KEVIERALKRSS 119
                 89*******987 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 2.9e-14
                 HHHHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHT CS
       HTH_8   3 eevEkelIeaALertgGnkskAArlLGisRrtLyrKLkkY 42 
                 + +Ek lIe+ALe+++Gn+++AAr+L i+R+ Ly K+k++
  CCG91521.1 399 AKLEKLLIEKALEESRGNRTEAARRLKIHRSLLYLKMKEH 438
                 789***********************************96 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   5.5e-10   7.6e-07       1     123 [.     157     277 ..     157     294 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 5.5e-10
                 EEEEE--SSSSHHHHHHHGGGGB......S--EEEEE--TT--HHHHH--B--..........--------.G-SEEEEESGGG--HHHHHHHHHHHHS CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal......nreveyvqltrdtteedlkgrreik.ngttslvdsplvraar.egeilvlDEveraesevlnsLlsllee 91 
                 +vl+vG++GtgK  +a+ + +           v+  ++++ + e++++g+++ +  g  + +++++    + +g +l+lDE+ +++ +++++Ll++l+e
  CCG91521.1 157 PVLIVGETGTGKELVAKAIHRHSsrgmgpFIAVNCAAIPEMLFESEFFGHLKGSfTGALRDRKGKFL---EaSGGTLFLDEIAEMPLAMQAKLLRVLSE 252
                 59*******************9998733323344455677888999999999544455555555555...159************************** PP

                 SEEE..-SSSEEE---......-EEEEEESS- CS
       AAA_5  92 rrllleeggelvkaknddllerfrviatanpl 123
                 +++ +  + +  ++        +r++a++n++
  CCG91521.1 253 KTITPIGSETTYSV-D------VRIVAATNKN 277
                 ****5444444444.3......9999999976 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3   1.8e+03     118     146 ..      90     120 ..      85     123 .. 0.78
   2 !    9.9   0.0   0.00031      0.43      11      43 ..     144     176 ..     134     180 .. 0.89
   3 !   15.5   0.0   6.2e-06    0.0085      95     158 ..     215     276 ..     207     284 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
  Mg_chelatase 118 fkrkvlevLRePledgevt..israkakvef 146
                   +kr +++ L +P+ ++e++  i+ra ++ +f
    CCG91521.1  90 MKRGAFDHLSKPIKRQEIKevIERALKRSSF 120
                   67889999*****999995448888877776 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00031
  Mg_chelatase  11 akraleiaaaGgHnlllvGppGsGKtmlakrlp 43 
                    ++++  aaa    +l+vG  G+GK ++ak+++
    CCG91521.1 144 VQKTIGFAAASDCPVLIVGETGTGKELVAKAIH 176
                   6778899***********************986 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 6.2e-06
  Mg_chelatase  95 skpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNp 158
                    + ++G+   a  G LfLDE++e+   +   L + l ++++t     +++++  ++ +vaa+N 
    CCG91521.1 215 LRDRKGKFLEASGGTLFLDEIAEMPLAMQAKLLRVLSEKTIT--PIGSETTYSVDVRIVAATNK 276
                   4678999999*******************9999999998765..6678899**********995 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       6.2   8.6e+03      44      74 ..     105     138 ..     101     147 .. 0.65
   2 !   26.1   0.0   6.8e-09   9.3e-06       1     112 [.     158     279 ..     158     298 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.2
                 HHHHHHHHHHHHTS...TSEEEEEETGGGHHHHH CS
         AAA  44 kkirelfkeakeka...kpsilfiDEidalaksr 74 
                 ++i+e++++a + +   + si  +DE ++l++++
  CCG91521.1 105 QEIKEVIERALKRSsfsSFSIKQFDEPEELIGES 138
                 6677888887555557444777788877777665 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 6.8e-09
                 EEEESSTTSSHHHHHHHHHHHHT...HEEEEEETTTCSSS.....STTHHHHHHHHHHHHHHHTS....TSEEEEEETGGGHHHHHTTCCCHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg...vefleisgsellsk.....yvgesekkirelfkeakeka....kpsilfiDEidalaksrsgseseeeervvn 87 
                 vl++G  GtGK l+aka+ ++++    +f+ ++++ + ++     ++g+ + ++ + +++ ++ +    +   lf+DEi ++  +            ++
  CCG91521.1 158 VLIVGETGTGKELVAKAIHRHSSrgmGPFIAVNCAAIPEMlfeseFFGHLKGSFTGALRD-RKGKfleaSGGTLFLDEIAEMPLAM-----------QA 244
                 799******************965667899999998886665555777777777777766.4444688545***********8888...........99 PP

                 HHHHHHHHTTTS........SSTEEEEEEESS..G CS
         AAA  88 qLlteldgvkkk........eskvivigatnr..p 112
                 +Ll++l++ +          + +v +++atn+   
  CCG91521.1 245 KLLRVLSEKTITpigsettySVDVRIVAATNKnlL 279
                 9999999999888888888877799*****98543 PP

>> Phage_NinH  Phage NinH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.1   1.5e+03       6      15 ..     192     201 ..     188     203 .. 0.81
   2 !   18.2   0.0   1.3e-06    0.0017      11      31 ..     409     429 ..     403     440 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.1
  Phage_NinH   6 ktiPdlLvet 15 
                   iP++L e+
  CCG91521.1 192 AAIPEMLFES 201
                 68*****985 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1.3e-06
  Phage_NinH  11 lLvetyGnqtEvARrlkcsRa 31 
                  L e++Gn tE+ARrlk +R+
  CCG91521.1 409 ALEESRGNRTEAARRLKIHRS 429
                 57899***************7 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.7e-05     0.024       3      88 ..     135     210 ..     133     287 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-05
      AAA_16   3 vGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 +G  + +++++ +++ +++++ + vl++Ge G+GK  ++++++r+ ++  g f++ +c             ++l+++e++  l+  
  CCG91521.1 135 IGESRPMRRVQKTIGFAAASD-CPVLIVGETGTGKELVAKAIHRHSSRGMGPFIAVNCAAI---------PEMLFESEFFGHLKGS 210
                 566677889999999888888.689******************999988899999998887.........4555555555555555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.4e-05     0.075      25      58 ..     147     180 ..     136     195 .. 0.79
   2 ?   -3.5   0.0       4.5   6.3e+03     146     176 ..     401     431 ..     397     434 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.4e-05
       AAA_7  25 llelllknkkpvllvGptGtGKtviikdllkkld 58 
                  +    +++ pvl+vG+tGtGK +++k + ++ +
  CCG91521.1 147 TIGFAAASDCPVLIVGETGTGKELVAKAIHRHSS 180
                 5556677899*************99998777665 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.5
       AAA_7 146 ikdvqlvaamgppgggrneitpRllrhfnvl 176
                 ++++ +  a ++  g+r+e   Rl+ h ++l
  CCG91521.1 401 LEKLLIEKALEESRGNRTEAARRLKIHRSLL 431
                 6666777788889999999999998887765 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0001      0.14      54     172 ..     152     275 ..     139     298 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
                 BCSS-EEEEEESSTSTHHHHHHHHHHHSSSEE..EEESSSSSSSHS.SSE....EEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHH CS
         MCM  54 lrgdinvllvgdpgtaKsqlLkyveklaprav..ytsgkgssaagL.taa....vvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEam 145
                   +d  vl+vg+ gt+K  + k++++ ++r++  ++  + +   ++   +      + + tg +    G  + a +G + +De+ +m  + + +l+ ++
  CCG91521.1 152 AASDCPVLIVGETGTGKELVAKAIHRHSSRGMgpFIAVNCAAIPEMlFESeffgHLKGSFTGALRDRKGKFLEASGGTLFLDEIAEMPLAMQAKLLRVL 250
                 567899*******************9999986557777776666652322111135667777788889******************************* PP

                 HHSEEEEESSSCEEEEE--EEEEEEE- CS
         MCM 146 EqqtisiaKaGivatLnartsvlaAan 172
                  ++ti+    G  +t +  + ++aA+n
  CCG91521.1 251 SEKTITPI--GSETTYSVDVRIVAATN 275
                 99998744..33455555555677776 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         2   2.8e+03      69      78 ..      18      40 ..       7      97 .. 0.71
   2 ?    4.9   0.1     0.022        31       7      36 ..     152     181 ..     145     197 .. 0.79
   3 ?    4.2   0.0     0.036        49      95     136 ..     218     259 ..     199     262 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2
      AAA_19 69 atTiHrlal.............l 78
                 +TiH+l+              l
  CCG91521.1 18 SKTIHSLGYsaletadpnevmeL 40
                58999997744444444333330 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.022
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallve 36 
                 a+++ ++l+++  GtGK  v k+i ++  +
  CCG91521.1 152 AASDCPVLIVGETGTGKELVAKAIHRHSSR 181
                 6777899**********9999999888765 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.036
      AAA_19  95 eeekklqeee.llivDEfqdvd.elqyrLlkallgekkklllvG 136
                 ++ k+l++   +l+ DE+ ++   +q +Ll+ l  ek+ ++ +G
  CCG91521.1 218 RKGKFLEASGgTLFLDEIAEMPlAMQAKLLRVLS-EKT-ITPIG 259
                 455666666679**********99*******998.544.66655 PP

>> Phage-MuB_C  Mu B transposition protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.5   6.2e+03      45      56 ..     141     152 ..     139     154 .. 0.87
   2 ?    9.9   0.0   0.00049      0.67      42      67 ..     345     370 ..     337     374 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.5
                  HHHHHHHHGGGT CS
  Phage-MuB_C  45 LRaltktLrlAa 56 
                  +R ++kt+  Aa
   CCG91521.1 141 MRRVQKTIGFAA 152
                  899****99998 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00049
                  -S-HHHHHHHHGGGT-TT-TTS--SS CS
  Phage-MuB_C  42 pGaLRaltktLrlAamfAkgegeelt 67 
                  pG  R+l++ +r A+++A+g+ +e++
   CCG91521.1 345 PGNVRQLENVIRRAGIIARGQSIEIE 370
                  899******************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.59
# Mc/sec: 2275.03
//
Query:       CCG91522.1  [L=484]
Description: Signal transduction histidine kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-23   81.6   0.1    1.6e-22   80.1   0.0    1.9  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.7e-10   40.8   0.5      5e-10   39.3   0.5    1.8  1  HisKA        His Kinase A (phospho-acceptor) domain
      2e-06   27.6   0.0    5.3e-06   26.3   0.0    1.7  1  HATPase_c_5  GHKL domain
     0.0075   16.2   0.0      0.014   15.4   0.0    1.4  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.067   13.0   0.0       0.13   12.1   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
       0.13   12.2   0.3       0.59   10.1   0.1    2.2  2  PuR_N        Bacterial purine repressor, N-terminal


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       2.6   7.9e+03       6      25 ..     241     260 ..     238     273 .. 0.74
   2 !   80.1   0.0   5.5e-26   1.6e-22       3     110 ..     380     482 ..     378     484 .] 0.93

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHHHHHHSTTT CS
   HATPase_c   6 LrqiisnlvdNavkfatkag 25 
                 L   ++n+ +N++++++ ++
  CCG91522.1 241 LVATLINAKKNLIDEKNRKE 260
                 67788999999999855544 PP

  == domain 2  score: 80.1 bits;  conditional E-value: 5.5e-26
                 HHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTE CS
   HATPase_c   3 ekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrG 101
                 +  + +++ nl++N++++++k+g iev ++++++ l++sveD+G+Gi ++ l+ +fe+f +      +++g+GlGlsivk++ve ++G+i++++  ++G
  CCG91522.1 380 PNSMARAFENLLQNSLEHTPKGGWIEVALERKDNSLCLSVEDSGKGIEEDLLESIFEPFFT-----KKSSGFGLGLSIVKEIVEAHNGRIEYKKGREGG 473
                 56677899**********88**********8779***************************.....7889**********************9999*** PP

                 EEEEEEEES CS
   HATPase_c 102 ttftftlpl 110
                  +f ++lp 
  CCG91522.1 474 ARFEIYLPS 482
                 ******996 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.5   1.7e-13     5e-10       1      63 [.     274     334 ..     274     337 .. 0.92

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1.7e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsr 63 
                 +lgr++a++aHELr+PL++i++ ae   ++     + ke + +i +++ r+ +l+e +  ls 
  CCG91522.1 274 ALGRMAAMLAHELRNPLATIQLEAENALET--DGTMNKEGIYRILDQVARMGKLLESIVLLSH 334
                 589***********************8774..679**********************998886 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.8e-09   5.3e-06       3      89 ..     380     468 ..     378     480 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.8e-09
  HATPase_c_5   3 dldlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyegek....kkle..sskskkeehGiGlksireivkkykgnlsiea 89 
                  ++ + + + nlL N++e   k       I++ +++k++sl++s+e s +g +    ++++    ++k++  G+Gl+ ++eiv+ ++g +++++
   CCG91522.1 380 PNSMARAFENLLQNSLEHTPKGG----WIEVALERKDNSLCLSVEDSGKGIEedllESIFepFFTKKSSGFGLGLSIVKEIVEAHNGRIEYKK 468
                  6778899**********988866....9*******************999552233222223226678999****************999875 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.6e-06     0.014      42     111 ..     389     459 ..     383     474 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.6e-06
  HATPase_c_2  42 Navehayleap.egpvevrlesdeealtvevaDsGpgfdpetlpdpteeepkeslkegGrGlalikglvDe 111
                  N  +   ++ p  g +ev+le+++++l+++v+DsG+g +   l+   e+  + +    G+Gl ++k++v+ 
   CCG91522.1 389 NLLQNSLEHTPkGGWIEVALERKDNSLCLSVEDSGKGIEEDLLESIFEPFFTKKSSGFGLGLSIVKEIVEA 459
                  555555667776799**********************7666666555555467777778888888888776 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.3e-05      0.13       4      62 ..     384     443 ..     381     457 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.3e-05
  HATPase_c_3   4 ekAlaelvdNsldAdaen..vkievnknrgktgeivieDdGkGmseeelknalrlatsske 62 
                    A   l++Nsl+   +   +++ +++++ ++  +++eD GkG++e+ l++ +++  ++k+
   CCG91522.1 384 ARAFENLLQNSLEHTPKGgwIEVALERKD-NSLCLSVEDSGKGIEEDLLESIFEPFFTKKS 443
                  56667788888886555555888888876.6899***************999998877776 PP

>> PuR_N  Bacterial purine repressor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.97   2.9e+03       5      23 ..     277     295 ..     268     297 .. 0.64
   2 ?   10.1   0.1    0.0002      0.59      41      68 ..     450     476 ..     431     478 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.97
       PuR_N   5 RlvaitkiLlenPnklisl 23 
                 R++a++ + l nP  +i+l
  CCG91522.1 277 RMAAMLAHELRNPLATIQL 295
                 6666666667777777766 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0002
       PuR_N  41 laiikealekeglGkletvaGaaGGvky 68 
                 l+i+ke++e  + G++e  +G++GG+++
  CCG91522.1 450 LSIVKEIVEA-HNGRIEYKKGREGGARF 476
                 7899999876.57**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3340.97
//
Query:       CCG91523.1  [L=316]
Description: Biotin synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-16   59.6   0.0    5.2e-16   58.6   0.0    1.6  1  BATS         Biotin and Thiamin Synthesis associated domain
    6.8e-11   42.8   0.0    1.3e-10   41.9   0.0    1.4  1  Radical_SAM  Radical SAM superfamily
  ------ inclusion threshold ------
       0.13   11.8   0.0        0.2   11.2   0.0    1.2  1  SURF4        SURF4 family


Domain annotation for each model (and alignments):
>> BATS  Biotin and Thiamin Synthesis associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   8.8e-20   5.2e-16       1      86 []     216     307 ..     216     307 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 8.8e-20
                 E--B----TCCCC...........HHHHHHHHHHSTTSE.CCCTCHH-HHHHHH.HHHCCT--EEE-C---TTTGGGSESSTT-TCCCCHHHHHHTT-E CS
        BATS   1 siprlrpikdtpl...........lkiiaalRlllPkag.illsgResaefrdq.lllklGansisagsktevggyaflttdgrsleedvkmleelGle 86 
                 +i+  +pik+tpl           ++iia++R+l+P+++ +l++gR+  +++ q l++ +G+nsi++g+k       +lt+++ +le d+++l++l+l+
  CCG91523.1 216 PINVYMPIKGTPLyaqsnfsyidlVRIIATARILFPTSRiRLAAGRKLLDESIQtLCYIAGVNSIFIGEK-------LLTQNNVQLETDLAWLKRLNLQ 307
                 89*******************************************************************9.......******************9986 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   2.2e-14   1.3e-10       5     163 ..      45     201 ..      42     205 .. 0.78

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 2.2e-14
                  SEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC..CCTEEEEEEECSSCHGHHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   5 rgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla..vpgiritvetngtlpdeeklerllel 100
                   gC+ +C++Ca++ + r+     sl  ee + e+ + ++e+g+  + lg     l ++++ ++++++k+    + + + +  + + ++e+ +  l+e 
   CCG91523.1  45 GGCSEDCKYCAQSAHYRTAIEKSSLLDEEAVFEAGKKAKENGATRFCLGAAWKGL-SHEELKTKQICKIIskISSLGLELCLSLGFLTEKAALMLKES 141
                  79*************7777777777777777777666578887777777664444.667778888888876756666666667777769999999999 PP

                  T-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 101 gvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleel 163
                  g+ +++++l+++ +  + k+   +h+f+e+l+++e+  ++g+k  +++ +++ Ge+ +++ e+
   CCG91523.1 142 GLSVYNHNLNTGPNY-YPKIA-TTHSFQERLQTIEIVQKVGLK-LCSGGIIGMGESLKDRLEM 201
                  9*************9.99999.9********************.6666666666777766665 PP

>> SURF4  SURF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.4e-05       0.2     158     232 ..      87     166 ..      75     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.4e-05
       SURF4 158 agrvllvlmfisllafe...lsftrvlltiigvaliilvviGfktklaalvLvl.lLfvlnlvlnafWt.ipkekelrdf 232
                 a+r +l   + +l + e      ++++ +i + +l +++++Gf t  aal+L    L+v+n  ln   + +pk ++++ f
  CCG91523.1  87 ATRFCLGAAWKGLSHEElktKQICKIISKISSLGLELCLSLGFLTEKAALMLKEsGLSVYNHNLNTGPNyYPKIATTHSF 166
                 56666666677777777222345678999999********************852699***9999754314666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2202.85
//
Query:       CCG91524.1  [L=284]
Description: putative thiosulfate sulfurtransferase sseA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-37  127.3   0.1    2.4e-19   69.8   0.0    2.1  2  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   3.1e-19   5.6e-15       2     106 ..      14     122 ..      13     123 .. 0.91
   2 !   69.8   0.0   1.3e-23   2.4e-19      12     105 ..     164     275 ..     154     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 3.1e-19
   Rhodanese   2 akelkellekgkvallDvRppee.YekghIpgAvnvskdtlsrakkseapllelpeellel....gidnkktvvvycdgggr.aaaaaallkklGykn. 93 
                 +++l+++l+++ ++++   +++  Y++ghIp+Avn+  d++ + + +  ++   pe++++l    gi++++ +++y+d+++  a+ + + ++  G ++ 
  CCG91524.1  14 TSWLQDHLNDPTIRIIESNEDPLlYDTGHIPNAVNI--DWRADLNDPLIRDYISPEKFAKLcsdkGISPQTICIFYGDKSNWwACYSLWVFQLFG-HTa 109
                 68**********99***9955555************..99999999999999999999999999******************77777999999**.677 PP

   Rhodanese  94 vsvldGGfkawke 106
                 v++l+GG ++w +
  CCG91524.1 110 VKILNGGRDKWIK 122
                 ***********76 PP

  == domain 2  score: 69.8 bits;  conditional E-value: 1.3e-23
   Rhodanese  12 gkvallDvRppeeY................ekghIpgAvnvskdtlsrakkseapllelpeellel.gidnkktvvvycdgggraaaaaallkk.lGyk 92 
                 +k  l+DvR+p eY                  ghIpgA nv+++t+ +++ + ++  el + ++++ gi+++k+ +vyc+ g+r++ ++  l++ lG+k
  CCG91524.1 164 KKGPLIDVRSPGEYtgellhmpeypqegalRGGHIPGAKNVPWKTAVNEDGTFKSAEELSKIYEQEcGISDDKETIVYCRIGERSSHTWFVLTYlLGHK 262
                 3334**********9999999999*99997779********9999999999999999999999999******************9999**99999**88 PP

   Rhodanese  93 nvsvldGGfkawk 105
                 nv+++dG++++w 
  CCG91524.1 263 NVKNYDGSWTEWG 275
                 8***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2053.11
//
Query:       CCG91525.1  [L=155]
Description: Cysteine desulfurase SufE subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-06   27.4   0.0    3.3e-06   27.0   0.0    1.2  1  SufE            Fe-S metabolism associated domain
  ------ inclusion threshold ------
      0.062   13.3   0.1        6.4    6.7   0.0    2.0  2  STAT6_C         STAT6 C-terminal
       0.14   12.3   0.0       0.22   11.7   0.0    1.4  1  FeS_assembly_P  Iron-sulfur cluster assembly protein
       0.18   11.5   0.1       0.76    9.5   0.0    2.0  2  Topo_Zn_Ribbon  Topoisomerase I zinc-ribbon-like


Domain annotation for each model (and alignments):
>> SufE  Fe-S metabolism associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   7.3e-10   3.3e-06       3     121 ..      14     138 ..      12     139 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 7.3e-10
                 HHHHSSSHHHHHHHHHHHHHTS----C.....CCCCCCEEECTSSSEEEEEEEEET.TSEEEEEE...ESSHHHHHHHHHHHHHCTTEECCCCTCC-TC CS
        SufE   3 efsllddweeryrylielgkklpplpe.....elkteenkvkGCqsqvwlaaeled.gklkfead...sdarivkGllalllevlsgktpeeilavdle 92 
                 +f+ l ++eer ++li +++  p+++         t+ +k ++C+  v +    ++ gk++f+++       ++k++ ++l+++lsg  p++i++++  
  CCG91525.1  14 TFEVL-GEEERREMLIAYSEAAPQFSPkedesYVLTDVRKDEECTDMVGVYLISDEeGKVYFRMHlgpHVQTLTKAMTSILCQGLSGSLPQQIVNIPS- 110
                 56666.899***************998444433457788889**98875555444414599998855455789*************************. PP

                 HHHHHTTSHHHHCHHHHHHHHHHHHHHHH CS
        SufE  93 dfleelglsehlspsRsnGlaamlkrika 121
                 +f++++ +   l   Rs++++ +l r+k+
  CCG91525.1 111 TFISKI-VGGELFRVRSQTVYYVLGRMKS 138
                 *****9.5566779999999999999985 PP

>> STAT6_C  STAT6 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0014       6.4      46      74 ..      12      40 ..       3      47 .. 0.87
   2 ?    5.2   0.0     0.004        18     105     175 ..      44     112 ..      40     121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0014
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     STAT6_C 46 iqsyqalsleesvevltafqephlqmpps 74
                i+++++l  ee  e+l a+ e+  q++p+
  CCG91525.1 12 ISTFEVLGEEERREMLIAYSEAAPQFSPK 40
                677********************9*9997 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.004
                 XXXXXXXXXXXXXXXXXXXXXXXXXXSHHHHTXSS-----HHHHHHHHH-XSSXXXXXXXXXXXXXXXXXX CS
     STAT6_C 105 pllcsdvtmaedsclsqqvggfpqetwvgedlfppllppteqdltkllleGqgeeggGslgvqpllqpshy 175
                 + + +dv    d+  ++ vg +  +   g+  f   l p  q ltk +     +  +Gsl+ q +  ps++
  CCG91525.1  44 SYVLTDVRK--DEECTDMVGVYLISDEEGKVYFRMHLGPHVQTLTKAMTSILCQGLSGSLPQQIVNIPSTF 112
                 556666653..444578899999999999999****************999999999****9998888876 PP

>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.8e-05      0.22      18      52 ..      54      88 ..      46     107 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.8e-05
                    SBCCCCT---EEEE-T-EEEEEE--SSTT-T.THHH CS
  FeS_assembly_P 18 vdlvslglvreidieggkVsvditltypacs.laea 52
                       +++  v+ i++e+gkV++ + l+ p+ + l  a
      CCG91525.1 54 EECTDMVGVYLISDEEGKVYFRMHLG-PHVQtLTKA 88
                    56789999******************.987755555 PP

>> Topo_Zn_Ribbon  Topoisomerase I zinc-ribbon-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00017      0.76       5      20 ..      34      49 ..      31      52 .. 0.86
   2 ?   -1.2   0.0      0.38   1.7e+03      16      24 ..      63      71 ..      62      72 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00017
  Topo_Zn_Ribbon  5 lvRFSrKtkeqYVlsE 20
                       FS K++e YVl++
      CCG91525.1 34 APQFSPKEDESYVLTD 49
                    568************6 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.38
  Topo_Zn_Ribbon 16 YVlsEkdGK 24
                    Y  s+++GK
      CCG91525.1 63 YLISDEEGK 71
                    899*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1139.83
//
Query:       CCG91526.1  [L=181]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00079   19.8   0.0     0.0013   19.1   0.0    1.4  1  DciA      Dna[CI] antecedent, DciA


Domain annotation for each model (and alignments):
>> DciA  Dna[CI] antecedent, DciA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   7.3e-08    0.0013       5      80 ..      96     171 ..      94     179 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 7.3e-08
        DciA   5 llerllskrglkkkalalarllqaWeeivGpelaahcrpvklr..dgtLvvevesgawateLryqkpqllerlneelg 80 
                 l+e+l++  + k + +  a+l++ W+e+vG+ la ++++v+++  ++t + +++s++   e++   p+++e+++   g
  CCG91526.1  96 LFESLFKRLERK-RMHHPAALQAIWKEAVGTPLATYSELVSINeeKQTAFFRCVSSVISYEITK-NPKIIEKIALLTG 171
                 566666554555.5677788999*******************6457779999999999999975.5888888876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1302.19
//
Query:       CCG91527.1  [L=236]
Description: Methylase involved in ubiquinone/menaquinone biosynthesis [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-60  203.3   0.0    3.8e-60  203.1   0.0    1.0  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    1.5e-20   73.6   0.0    2.5e-20   72.9   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    1.1e-17   64.5   0.0    2.1e-17   63.6   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    7.3e-15   55.1   0.0    8.7e-15   54.8   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    2.5e-13   50.2   0.0    3.5e-13   49.7   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    5.2e-11   43.2   0.0    1.1e-10   42.1   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
    1.4e-05   24.8   0.0    2.1e-05   24.2   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
     0.0011   18.9   0.0     0.0018   18.2   0.0    1.3  1  Methyltransf_8   Hypothetical methyltransferase
     0.0089   15.1   0.0      0.014   14.5   0.0    1.2  1  DREV             DREV methyltransferase
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.019   14.2   0.0    1.2  1  Rsm22            Mitochondrial small ribosomal subunit Rsm22
       0.03   13.5   0.0      0.036   13.2   0.0    1.1  1  Methyltransf_33  Histidine-specific methyltransferase, SAM-de
      0.039   12.5   0.0      0.047   12.2   0.0    1.1  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
      0.046   13.3   0.0        0.1   12.2   0.0    1.5  1  MTS              Methyltransferase small domain
      0.085   12.3   0.0       0.32   10.4   0.0    1.8  2  Methyltransf_4   Putative methyltransferase
        0.1   12.1   0.0       0.55    9.7   0.0    1.9  2  Methyltransf_5   MraW methylase family


Domain annotation for each model (and alignments):
>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.1   0.0   3.1e-63   3.8e-60       6     233 .]       4     224 ..       1     224 [. 0.96

  Alignments for each domain:
  == domain 1  score: 203.1 bits;  conditional E-value: 3.1e-63
                      XXXXXXXXX-HHHHHHHHHHHHHTTTHHHHHHHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSST CS
  Ubie_methyltran   6 eekvkevfesvaskyDlmndvlslgihrlWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkin 99 
                      ++ v ++f++vas+yD +n  lslgi  lW+k + k va+++++++lD+a+G+gDl ++++++  +  +  ++Di+++mL  +++k  +     
       CCG91527.1   4 QNPVGKLFDKVASRYDFLNHFLSLGIDVLWRKRLAKKVADLKPSSLLDLATGSGDLLLAILKNSPTILRYYGVDISQEMLALAKEKGLD----- 92 
                      4459*****************************************************************************99887655..... PP

                      EEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE----SHHHHHHHHHHHH.HHHHHHHHHHS-HHHHHHHHH CS
  Ubie_methyltran 100 ieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsqayelyskevlPvlGkllakdldsyryLve 193
                       ++l a+a  Lpf + sfDvvt++fGlrn+ D+  aL+e++rvl+pGG+l+vlefsk++  +l+  y  y ++++P+l +++    d y yL++
       CCG91527.1  93 -NLLIADASSLPFVESSFDVVTIAFGLRNFQDRMLALREIFRVLRPGGTLYVLEFSKPTA-ILRPFYLFYLQKLIPQLASFVGAPKDAYIYLAQ 184
                      .4799*****************************************************86.78899**************************** PP

                      HHHHS--HHHHHHHHHHTTEEEEEEEEEGGGTEEEEEEEE CS
  Ubie_methyltran 194 sirafPdqetlkeliedaGfksveyesltgGvvaihigvk 233
                      si +fP+ ++l  ++++aGf+   +  +t+G+v+ih+g k
       CCG91527.1 185 SILDFPQPKELVGIFQNAGFDCCGFVPMTFGIVTIHWGKK 224
                      **************************************87 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   2.1e-23   2.5e-20       1      96 []      50     143 ..      50     143 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 2.1e-23
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+++G+G l+ a+ k+     r++gvD+s+eml+lakek+ ++      + ada++lpf ++sfD+v++ + l +++d++ al+ei RvL+pg
       CCG91527.1  50 LDLATGSGDLLLAILKNSptiLRYYGVDISQEMLALAKEKGLDNL-----LIADASSLPFVESSFDVVTIAFGLRNFQDRMLALREIFRVLRPG 138
                      89************9877889****************99999886.....9******************************************* PP

                      EEEEE CS
  Methyltransf_11  92 Gllvi 96 
                      G+l++
       CCG91527.1 139 GTLYV 143
                      **985 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   1.8e-20   2.1e-17       2      97 .]      50     139 ..      49     139 .. 0.93

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 1.8e-20
                      EEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      Ldl++G+G+l+la++k+ +   +++gvDis+eml+ a+e+  +     +++ +da++lpf ++sfD+v+++++l  ++  d+  al+ei+rvL+
       CCG91527.1  50 LDLATGSGDLLLAILKNSPtILRYYGVDISQEMLALAKEKGLD-----NLLIADASSLPFVESSFDVVTIAFGLRNFQ--DRMLALREIFRVLR 136
                      9****************8569********************44.....69********************99999987..67789********* PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       CCG91527.1 137 PGG 139
                      **9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   7.3e-18   8.7e-15       5     113 ..      47     147 ..      43     201 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 7.3e-18
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeie 98 
                       ++lDl++G+G+l++++ ++  +  +++G+Dis+e++ lA+e    +gld  ++ ++d+ +l+  + +++fD+++    l  + d   +l+ei+
       CCG91527.1  47 SSLLDLATGSGDLLLAILKNSPTILRYYGVDISQEMLALAKE----KGLD--NLLIADASSLP--FVESSFDVVTIAFGLRNFQDRMLALREIF 132
                      579***************88777888****************....6***..6799*******..889********9999************** PP

  Methyltransf_31  99 rvlkpggilliedpr 113
                      rvl+pgg l + +++
       CCG91527.1 133 RVLRPGGTLYVLEFS 147
                      ***********9998 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   2.9e-16   3.5e-13      14     161 ..      35     205 ..      28     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 2.9e-16
  Methyltransf_23  14 erllpk..lraggrvLdiGcGtGillevlrengf...svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppell 102
                      +rl++k  + +++++Ld+++G+G ll  + +n      ++gvD+s e+ ++a+++   +   +d+++ ++ + +fd+++  ++l +++d   +l
       CCG91527.1  35 KRLAKKvaDLKPSSLLDLATGSGDLLLAILKNSPtilRYYGVDISQEMLALAKEKGLDNLLIADASSLPFVESSFDVVTIAFGLRNFQDRMLAL 128
                      5566555588999**********887777555433779**************988888888898899999999********************* PP

  Methyltransf_23 103 rqiatllkpgGylllseplasl...............kedrllld.........wlylvpagrhisffsarslkelleeaGle 161
                      r i++ l+pgG l+++e+ ++                +      +          +y+  a   + f + ++l  ++++aG++
       CCG91527.1 129 REIFRVLRPGGTLYVLEFSKPTailrpfylfylqkliP------QlasfvgapkDAYIYLAQSILDFPQPKELVGIFQNAGFD 205
                      ******************99987888888875554441......344444444477777887888****************97 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   9.1e-14   1.1e-10       1      99 []      50     141 ..      50     141 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 9.1e-14
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhlkdirevldnirkl 92 
                      L++ +G+G+ll a+l++    ++y+gvDis++++      lak+++++n  +  +a +l   +   ssfD+v++++ l +++d+  +l++i ++
       CCG91527.1  50 LDLATGSGDLLLAILKNSpTILRYYGVDISQEML-----ALAKEKGLDNLLI-ADASSLP--F-VeSSFDVVTIAFGLRNFQDRMLALREIFRV 134
                      89****************8889************.....3333333332222.2222222..2.136*************************** PP

  Methyltransf_12  93 LkpgGrl 99 
                      L+pgG l
       CCG91527.1 135 LRPGGTL 141
                      *****86 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.8e-08   2.1e-05      14     102 ..      46     135 ..      35     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.8e-08
        MetW  14 gsrvldlGcGdGel.lellkeekqv.dgrGleldeegvaecvakGlsviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldellrig 102
                  s +ldl +G G+l l +lk++  + + +G+++++e +a + +kGl  +   +d     f ++sfd+v ++  l++ ++    l+e++r+ 
  CCG91527.1  46 PSSLLDLATGSGDLlLAILKNSPTIlRYYGVDISQEMLALAKEKGLDNLLI-ADASSLPFVESSFDVVTIAFGLRNFQDRMLALREIFRVL 135
                 4789********97258999998873578*****************87754.45555678999*************************995 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.5e-06    0.0018     108     160 ..      94     147 ..      77     159 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.5e-06
                     EEES-TTS-S--TT-EEEEEEES---S.S-HHHHHHHHHHHEEEEEEEEEEEEG CS
  Methyltransf_8 108 vvacdlakvPledesvdvavfclslmg.tnladflkeanrvlkvGGllkvaevk 160
                     +   d + +P  ++s dv+ + + l   ++    l+e+ rvl++GG l+v e +
      CCG91527.1  94 LLIADASSLPFVESSFDVVTIAFGLRNfQDRMLALREIFRVLRPGGTLYVLEFS 147
                     5667999*************999997525667789***************9975 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.2e-05     0.014      90     184 ..      41     141 ..      31     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-05
        DREV  90 asdqedkklldlGaGdGeitkrv...aptfeevyatelsetmrdrlkkkkynvlsale...lqetdvkldlilclnlldrcfdplklledirsalepng 182
                  +d ++  lldl +G G++   +   +pt+ + y  ++s++m    k k+ + l + +   l   +  +d+++    l    d +  l++i  +l+p g
  CCG91527.1  41 VADLKPSSLLDLATGSGDLLLAIlknSPTILRYYGVDISQEMLALAKEKGLDNLLIADassLPFVESSFDVVTIAFGLRNFQDRMLALREIFRVLRPGG 139
                 578999************97654333789999*****************9998888773334556789****988888777888888999**9999987 PP

        DREV 183 rv 184
                   
  CCG91527.1 140 TL 141
                 64 PP

>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.6e-05     0.019      24     117 ..      35     122 ..      29     143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
       Rsm22  24 delaervpdflPkslldvgegpgtalwaaselweeleevlvidaseelleiskelaadapelkeaalrrsvirealeleea..dLviisyvLlele 117
                 + la++v d +P slld++ g g  l+a+ +  + + +++ +d s+e+l+++ke   d+  +  a   +      l + e+  d+v+i++ L +++
  CCG91527.1  35 KRLAKKVADLKPSSLLDLATGSGDLLLAILKNSPTILRYYGVDISQEMLALAKEKGLDNLLIADA---S-----SLPFVESsfDVVTIAFGLRNFQ 122
                 578999*********************************************99877666666555...1.....1223222347777777776665 PP

>> Methyltransf_33  Histidine-specific methyltransferase, SAM-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     3e-05     0.036      53     108 ..      38      89 ..      31     155 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3e-05
  Methyltransf_33  53 aaeiaaaipaatlvelGsGsseKtrlLLealeaaekeltYvplDvseeaLeealea 108
                      a+++a+ ++ + l++l  Gs++   lLL+ l+++ + l+Y+ +D+s+e+L+ a e+
       CCG91527.1  38 AKKVAD-LKPSSLLDLATGSGD---LLLAILKNSPTILRYYGVDISQEMLALAKEK 89 
                      455555.678899***999886...566666555567*************977655 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     4e-05     0.047     147     214 ..      75     140 ..      33     151 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4e-05
  Methyltransf_29 147 pkDeheaqvqfaLeRgvpailavlgtkrlpyPsrsfdlihCsrCridwteedgilllevdRvlRpgGy 214
                        D  ++ + +a e+g+  +l    ++ lp+  +sfd++  +  + ++++   + l e+ RvlRpgG 
       CCG91527.1  75 GVDISQEMLALAKEKGLDNLLI-ADASSLPFVESSFDVVTIAFGLRNFQD-RMLALREIFRVLRPGGT 140
                      5677788889999999998874.56678**************99999865.56889**********94 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.4e-05       0.1      31      80 ..      45      95 ..      34     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.4e-05
                TCSEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTG CS
         MTS 31 lsgkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleankl 80
                +  ++lDl++G G l +a++k+sp++     vd++ + l++ake   +n l
  CCG91527.1 45 KPSSLLDLATGSGDLLLAILKNSPTILrYYGVDISQEMLALAKEKGLDNLL 95
                55679********************87799*************98877765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00027      0.32       4      67 ..      48     108 ..      45     117 .. 0.79
   2 ?   -0.8   0.0      0.77   9.2e+02     100     115 ..     128     143 ..     118     144 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
                     EEEEET-TTSHHHHHHHHHSTTSE.EEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHC CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkknPdkn.flGiEirvkvvakvlkkiealelkNlrilrgdalkvllel 67 
                      +l++ +G+G++l+a+ k+ P+++ + G++i+++++    + +++++l Nl+i     l +++++
      CCG91527.1  48 SLLDLATGSGDLLLAILKNSPTILrYYGVDISQEML----ALAKEKGLDNLLIADASSLPFVESS 108
                     579*******************85499***988765....5567788888888776666665555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.77
                     HHHHHHHEEEEEEEEE CS
  Methyltransf_4 100 lkelarvLkkgGvlel 115
                     l e+ rvL++gG l++
      CCG91527.1 128 LREIFRVLRPGGTLYV 143
                     67999********985 PP

>> Methyltransf_5  MraW methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00046      0.55      15      63 ..      40      89 ..      28     120 .. 0.80
   2 ?   -0.0   0.0      0.41   4.9e+02     222     242 ..     127     147 ..     118     152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00046
                    HT---TT-EEEES--TTSHHHHHHHTT--TT.EEEEEES-HHHHHHHTT. CS
  Methyltransf_5 15 llepkedgvyiDaTlGaggHsealLeqlsel.rligidrDksalaraker 63
                     +++ +   ++D   G+g    a+L++ ++  r++g+d+ +++la ake+
      CCG91527.1 40 KVADLKPSSLLDLATGSGDLLLAILKNSPTIlRYYGVDISQEMLALAKEK 89
                    55566777899*******************99***************985 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.41
                     HHHHHHHHEEEEEEEEEEESS CS
  Methyltransf_5 222 lleaalellakggrlavisFh 242
                     +l++++++l++gg l v+ F 
      CCG91527.1 127 ALREIFRVLRPGGTLYVLEFS 147
                     68899************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1787.73
//
Query:       CCG91528.1  [L=237]
Description: Metal-dependent phosphoesterase (PHP family) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-15   57.2   0.1    2.3e-15   56.1   0.1    1.7  2  PHP_C     PHP-associated
    4.6e-08   33.5   0.0    5.5e-08   33.3   0.0    1.3  1  PHP       PHP domain


Domain annotation for each model (and alignments):
>> PHP_C  PHP-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       0.8   7.2e+03       9      20 ..      26      37 ..      19      37 .. 0.79
   2 !   56.1   0.1   2.6e-19   2.3e-15       2      55 ..     147     200 ..     146     201 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.8
       PHP_C  9 rfAeklglpgtg 20
                r+A++ gl g++
  CCG91528.1 26 RVAKEKGLNGFA 37
                788888888876 PP

  == domain 2  score: 56.1 bits;  conditional E-value: 2.6e-19
       PHP_C   2 eaNrrArrfAeklglpgtgGSDAHrleeVGrayTefeepiatpdelleairegr 55 
                 + N++A  +A+++ lp++ +SDAH +e +G a T +e++  +++ +l+air g+
  CCG91528.1 147 RCNQKAMAYAKERRLPMISASDAHDAEVIGTALTIVETDDFSVQGVLRAIRHGT 200
                 68**************************************************96 PP

>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   6.1e-12   5.5e-08       1      52 [.       6      58 ..       6     234 .. 0.68

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 6.1e-12
                EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTT..HHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
         PHP  1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlf..gyvefykaakk 52
                d+H+H+ +s+  g+ ++e+lv+ ake+gl  +a+TDh+     +y+e +  ++k
  CCG91528.1  6 DFHCHSRFSAD-GVSEPEALVRVAKEKGLNGFALTDHNTSAgiDYLEQIGLIRK 58
                79********9.**************************9885557777777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1702.05
//
Query:       CCG91529.1  [L=510]
Description: Bifunctional purine biosynthesis protein purH (Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase; IMP cyclohydrolase) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-101  340.0   0.0   1.6e-101  339.7   0.0    1.1  1  AICARFT_IMPCHas  AICARFT/IMPCHase bienzyme
    8.5e-22   77.2   0.2    2.2e-21   75.8   0.1    1.8  2  MGS              MGS-like domain
  ------ inclusion threshold ------
      0.077   12.6   1.8        0.4   10.2   0.0    2.6  3  PrpR_N           Propionate catabolism activator


Domain annotation for each model (and alignments):
>> AICARFT_IMPCHas  AICARFT/IMPCHase bienzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.7   0.0  2.7e-105  1.6e-101       1     296 []     132     441 ..     132     441 .. 0.95

  Alignments for each domain:
  == domain 1  score: 339.7 bits;  conditional E-value: 2.7e-105
                      HHHTTTT-EEE-SGGGHHHHHHHHHC.T.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....CSE...EEEEEEEEESSSSSTTS-EEEEE CS
  AICARFT_IMPCHas   1 AAKNhksVtvvvdpadYeevleelkk.gevsletrkklaakaFahtaaYDaaiaeylskq.....lpetlklslekkqkLrYGeNphQkaalye 88 
                      AAKN+ +Vtvvvdp+dY+ev++++++ g++sl +rkkla kaF+ t+ YD++ia++++++     +p + ++ l + + LrYGeNphQ+aaly 
       CCG91529.1 132 AAKNYPHVTVVVDPTDYSEVIHQVQTmGSTSLVLRKKLAFKAFNLTSYYDSQIARFFQEKfhirqFPPESSIPLYDYSPLRYGENPHQHAALYG 225
                      9********************************************************99977777667889999999****************5 PP

                      -TTSTTHHH-EEEESS---HHHHHHHHHHHHHHCTS....EEEEEEETTEEEEEEEESSHHHHHHHHHCCSHHHHTTEEEEECCEE-HHHHHHH CS
  AICARFT_IMPCHas  89 eeeeeglakaeqlqGkelsynNllDadaalelvkef....aavaivKHanpcGvAvgetlaeAyekAlaaDpvSaFGgiialnrevdaetaeei 178
                          + ++ ++qlqGk+lsynN+lD+daa++++ ef    a++ai+KH++pcGv++g+t+++Ay kA+++D+ S FGg+ia+n+++d ++a+ +
       CCG91529.1 226 ----DFWNYFQQLQGKDLSYNNILDIDAAVRTLLEFpaerAVAAIFKHTSPCGVGMGNTVTDAYLKAFETDRESPFGGVIAINKPLDYSLARLL 315
                      ....57889***************************98766889************************************************** PP

                      TTS-ECEEEECEE-CCHHHCCTTSSS-EEEE-SS-.......EEEE.ETTEEEEEE--G..TTCCCSEEECSC---HHHHHHHHHHHHHCCCS- CS
  AICARFT_IMPCHas 179 kkefleviiApsfeeealeilkkkknlrvlelkee.......elrs.vsgglLvqerdeakieeeelkvvtkkkpteeeledllfawkvvkhvk 264
                      +++f+ev+iAp++e+e l++l+kkknlr++++  e        +rs + + +L+qe d+  +++++++vv+ +kpt+ee+++++f++kvvkh +
       CCG91529.1 316 SEIFVEVVIAPEYEDEGLKLLQKKKNLRLIQVCLEklpfprfVIRSlFGNSYLLQEPDTILLDQDKIEVVSLRKPTQEEINKCMFGLKVVKHAR 409
                      *******************************9874567788899*9555566****************************************** PP

                      SS-EEEEETTEEEEEE-SSSSHHHHHHHHHHH CS
  AICARFT_IMPCHas 265 SNaivlakdgqtvgiGaGqmsRvdsarlAvek 296
                      SNa+v++++++t++iG+Gq sRvd++r+A+ek
       CCG91529.1 410 SNAVVFSDSDKTLAIGSGQASRVDAVRIAIEK 441
                      ******************************97 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.1   3.7e-25   2.2e-21       1      95 []      13     127 ..      13     127 .. 0.97
   2 ?   -3.8   0.0       2.6   1.5e+04      26      43 ..     377     394 ..     376     409 .. 0.77

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 3.7e-25
                 THHHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCH..................HHHHHHHTTSCC...EEEEE--THHHHHHCH CS
         MGS   1 glvelakklkelgfellATgGTakllkeagipvtevvektgegerlggrv..................eildaikngeid...lvintlypfkatvakd 78 
                 g+vela++l+++ +++++TgGTa+llk+a ipv+ev+++tg++e lggrv                  ++l+++++ +i    +vi+++ypf+++++ +
  CCG91529.1  13 GIVELARALSQARIDIISTGGTARLLKNAHIPVQEVSDVTGFPELLGGRVktlhakihagilykrdeaQHLKEVAELGIPqiqYVIVNFYPFTTAIK-K 110
                 69******************************************************************999999999887788*************8.9 PP

                 HHHHHHHHHHTTSHEES CS
         MGS  79 gykirraaenidIplpt 95 
                 + +++++ + idI++ t
  CCG91529.1 111 ELSTEEILDFIDIGGCT 127
                 **************987 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.6
                 HHHTT--EEECCCCHSTG CS
         MGS  26 lkeagipvtevvektgeg 43 
                 l + +i+v+++ + t+e+
  CCG91529.1 377 LDQDKIEVVSLRKPTQEE 394
                 567788888888888877 PP

>> PrpR_N  Propionate catabolism activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   6.7e-05       0.4      17      53 ..      14      48 ..       6      55 .. 0.86
   2 ?    0.7   0.0     0.057   3.4e+02      43      82 ..     131     169 ..      93     203 .. 0.71
   3 ?   -3.9   0.1       1.5   9.2e+03     147     158 ..     432     443 ..     429     444 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.7e-05
      PrpR_N 17 avelakeleaegvdviiSrGgtaellrkhvsvPVvei 53
                 vela++l + ++d iiS Ggta ll+++ ++PV e+
  CCG91529.1 14 IVELARALSQARID-IISTGGTARLLKNA-HIPVQEV 48
                5899****999999.58*********998.8998766 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.057
      PrpR_N  43 rkhvsvPVveikvsgyDilralkqakklgekialvgfeni 82 
                 +++ + P v + v   D+ +++ q+++ g+   lv  +++
  CCG91529.1 131 SAAKNYPHVTVVVDPTDYSEVIHQVQTMGS-TSLVLRKKL 169
                 444589999999*********999999997.344444443 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 1.5
      PrpR_N 147 kesvrqAieeAl 158
                  ++vr Aie+A+
  CCG91529.1 432 VDAVRIAIEKAR 443
                 589999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3661.20
//
Query:       CCG91530.1  [L=68]
Description: hypothetical protein MFUM_110027 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       157  (0.00875676); expected 358.6 (0.02)
Passed bias filter:                      135  (0.0075297); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 556.61
//
Query:       CCG91531.1  [L=53]
Description: hypothetical protein MFUM_120001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 425.42
//
Query:       CCG91532.1  [L=176]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1297.34
//
Query:       CCG91533.1  [L=152]
Description: SsrA-binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-52  176.6   1.2    2.7e-52  176.5   1.2    1.0  1  SmpB      SmpB protein


Domain annotation for each model (and alignments):
>> SmpB  SmpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.5   1.2   1.5e-56   2.7e-52       3     143 ..       7     147 ..       5     148 .. 0.96

  Alignments for each domain:
  == domain 1  score: 176.5 bits;  conditional E-value: 1.5e-56
                 E-CHHHTTSEEEEEEEEEB---HHHHHHHHH--EESSSEEEEEESSCEEEEESEE---S-.-SS----TT--EEBB--HHHHHHHHHHHHHHT-EEEEE CS
        SmpB   3 kNkkarhdYeieetyeaGivLkGtEvkslragkvnlkdsyvkikngelfllnvhiseyek.gnifnhdpkrkrkLLlhkkeikklagkveekgltlvpl 100
                  N+kar dY+i +t+eaGivL G+Evksl++gk +l+ ++++i+nge+fl++++is+yek  ++  +dpk +rkLLlhkkei +lag+++++g t+vpl
  CCG91533.1   7 INRKARRDYNIIKTLEAGIVLLGSEVKSLKEGKGSLEGAFARIENGEAFLYQMNISPYEKaPTYALRDPKTPRKLLLHKKEIGELAGAISRQGRTIVPL 105
                 6***********************************************************555556********************************* PP

                 EEEE.ESSEEEEEEEEEEC--SS--XXXXXXXXXXXXXXXXXX CS
        SmpB 101 klyfkkkglvKveialakgkklydkretlkerdakreieralk 143
                 kly+ ++g++Kv +++a gk ++dkre++ke++ +rei+r+lk
  CCG91533.1 106 KLYY-RRGKIKVLLGIASGKSQVDKREKIKEQESQREISRILK 147
                 ****.89*********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.48
# Mc/sec: 959.13
//
Query:       CCG91534.1  [L=93]
Description: DNA-directed RNA polymerase, subunit K/omega [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0051   16.7   0.4      0.012   15.6   0.0    1.7  2  RNA_pol_Rpb6  RNA polymerase Rpb6


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb6  RNA polymerase Rpb6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.4e-07     0.012      12      47 ..      25      65 ..      24      66 .. 0.79
   2 ?   -1.8   0.1      0.17     3e+03      34      44 ..      69      79 ..      68      83 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.4e-07
                  HHHHHHHHHHHH........HTSS-...SSSSTTCHHHHTT-S CS
  RNA_pol_Rpb6 12 lvriaakRArQieeg.e...sletq...kpvviAlrEiaegki 47
                  lv ++++R r +++g +   +  t+   +  +iAl+Eiaeg++
    CCG91534.1 25 LVNMVSRRVRLLAKGaKpliE--TSphwNLMQIALKEIAEGRL 65
                  788999******888876642..2233499***********87 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.17
                  SSSTTCHHHHT CS
  RNA_pol_Rpb6 34 pvviAlrEiae 44
                  p+  A++E a 
    CCG91534.1 69 PIEEATEEKAP 79
                  88889999665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 605.73
//
Query:       CCG91535.1  [L=234]
Description: Zn-ribbon protein, possibly nucleic acid-binding [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-12   45.9   0.4    1.1e-11   44.7   0.4    1.7  1  zf-RING_7        C4-type zinc ribbon domain
  ------ inclusion threshold ------
      0.011   15.8  11.8      0.011   15.8  11.8    2.4  2  BRE1             BRE1 E3 ubiquitin ligase
      0.016   15.2   6.9      0.016   15.2   6.9    2.9  3  Laminin_II       Laminin Domain II
      0.018   15.2   4.1      0.018   15.2   4.1    3.1  3  CEP209_CC5       Coiled-coil region of centrosome protein CE2
      0.021   13.0  26.8      0.074   11.2  19.4    2.0  2  EzrA             Septation ring formation regulator, EzrA
      0.075   13.3   1.4       0.15   12.3   0.9    1.9  1  Par3_HAL_N_term  N-terminal of Par3 and HAL proteins
        0.1   12.2  19.7       0.18   11.4  19.7    1.4  1  PspA_IM30        PspA/IM30 family
       0.24   11.7  22.8        1.9    8.8   6.4    3.2  3  BLOC1_2          Biogenesis of lysosome-related organelles co
       0.39    9.7  23.7        2.4    7.2  10.3    2.0  2  Atg14            Vacuolar sorting 38 and autophagy-related su
       0.48    9.2  24.3       0.72    8.7  24.3    1.3  1  Spc7             Spc7 kinetochore protein
       0.53   10.3   9.6        1.1    9.3   3.4    2.7  2  DUF1732          Domain of unknown function (DUF1732)
       0.54   10.4  13.2       0.13   12.3   5.3    2.5  2  TolA_bind_tri    TolA binding protein trimerisation
       0.91    9.2  19.6       0.11   12.1  12.7    2.0  2  LXG              LXG domain of WXG superfamily
        1.1    8.6  29.0        2.7    7.3  29.0    1.6  1  GAS              Growth-arrest specific micro-tubule binding
        1.3    9.4  31.7       0.83   10.1  12.1    3.2  3  DUF4200          Domain of unknown function (DUF4200)
        3.1    8.2  20.2        1.5    9.2   7.3    2.2  2  CENP-H           Centromere protein H (CENP-H)
        3.7    7.9  11.3        6.9    7.1   1.8    3.2  3  TSC22            TSC-22/dip/bun family
        4.7    7.6  25.2        6.5    7.1   2.9    2.9  3  YlqD             YlqD protein
        4.9    7.5  26.5      0.042   14.1   5.8    4.0  3  ABC_tran_CTD     ABC transporter C-terminal domain
        7.6    5.3  25.9       0.64    8.8  11.9    2.0  2  DUF812           Protein of unknown function (DUF812)
        8.7    5.1  12.3         11    4.8  12.3    1.1  1  LMBR1            LMBR1-like membrane protein
        8.9    6.7  22.0         15    6.0  21.8    1.5  1  Fez1             Fez1


Domain annotation for each model (and alignments):
>> zf-RING_7  C4-type zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.4   1.3e-14   1.1e-11       1      33 []     198     230 ..     198     230 .. 0.99

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 1.3e-14
                 EETTT--B--CCHHHHHCCSTB-EE-TTT--EE CS
   zf-RING_7   1 tCgGChmelppqvlselragdevvtCpeCGRIL 33 
                 tCgGChm+   q + +++a d +v+C++CGRIL
  CCG91535.1 198 TCGGCHMRMTKQAYLKVKASDALVFCEYCGRIL 230
                 8*******************************9 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   9.7      0.46   3.8e+02      15      70 ..      21      76 ..      10      83 .. 0.59
   2 ?   15.8  11.8   1.3e-05     0.011       9      78 ..      87     156 ..      79     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.46
        BRE1 15 lseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsK 70
                 +++lsk   e++  +++ +  e + a+ +++  +++ s++ +e+e+  L++++++
  CCG91535.1 21 RRKLLSKIPVEIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEMEAEIAGLKSKINQ 76
                55555555555555555555555555666666666666666666666666666654 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.3e-05
        BRE1   9 ekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqL 78 
                 ++++++ls q++  ++++++le+k+l l  +k++  + y++a+ +   l  e+kk ++ ls ++e  e+ 
  CCG91535.1  87 NEEYQALSHQIDHATQKISDLEDKVLDLLEKKERISKTYKEADIQFHHLALEVKKKTEALSTQKENFEKS 156
                 679****************************************************999999999988763 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   3.8     0.012        10      25      79 ..      24      78 ..       8      83 .. 0.68
   2 ?   15.2   6.9     2e-05     0.016       5      81 ..      46     124 ..      43     133 .. 0.82
   3 ?    1.5   0.3      0.34   2.8e+02      12      39 ..     136     163 ..     127     180 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.012
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHH CS
  Laminin_II 25 nlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelk 79
                 l+++  ++++i+++ +  +ekv + +k + ++  s+k++e ++  L +k+++ k
  CCG91535.1 24 LLSKIPVEIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEMEAEIAGLKSKINQYK 78
                3444445556666666556667889999999*************99999988765 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHH CS
  Laminin_II   5 aaeanetakevleqlaplsqnlentkeklse..inrsveetnekvkdankairdArrsvkkLeklapqLldklkelkql 81 
                 +a+ ++ + +v   ++++++++  +k+k+++  i++   + ne+ ++++++i+ A +++++Le ++ +Ll+k +++ + 
  CCG91535.1  46 VAQNKKELLQVDLSIKEMEAEIAGLKSKINQykIQQLSTRKNEEYQALSHQIDHATQKISDLEDKVLDLLEKKERISKT 124
                 555667777888999*************997224555566788899**************************8888765 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.34
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  12 akevleqlaplsqnlentkeklseinrs 39 
                 a ev++++++ls++ en +++ls++ ++
  CCG91535.1 136 ALEVKKKTEALSTQKENFEKSLSQLLEE 163
                 4567777777777777777777776544 PP

>> CEP209_CC5  Coiled-coil region of centrosome protein CE290
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   7.4      0.59   4.8e+02      48     106 ..      10      68 ..       7      73 .. 0.90
   2 ?   15.2   4.1   2.2e-05     0.018      65     120 ..      71     126 ..      70     134 .. 0.88
   3 ?    6.5   1.2     0.011       9.1      69     109 ..     138     179 ..     129     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.59
  CEP209_CC5  48 kdakgaqkvleWhkkieelrlqelklkreltkqkeeikylknlieeqertisklEeeiv 106
                 k +  ++k++e +k + ++ ++  k +++++ + e++   k+   + + +i+++E ei 
  CCG91535.1  10 KLQEMDKKIIERRKLLSKIPVEIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEMEAEIA 68 
                 55677899************************************************996 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.2e-05
  CEP209_CC5  65 elrlqelklkreltkqkeeikylknlieeqertisklEeeivqlnkvheerqlawe 120
                 +++++ +k ++  t+++ee ++l ++i++  ++is+lE+ +++l + +e    +++
  CCG91535.1  71 KSKINQYKIQQLSTRKNEEYQALSHQIDHATQKISDLEDKVLDLLEKKERISKTYK 126
                 57999**************************************9998776655555 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.011
  CEP209_CC5  69 qelklkreltkqkeei.kylknlieeqertisklEeeivqln 109
                 +  k++ +l++qke+  k l +l ee++  i++lE   +q+ 
  CCG91535.1 138 EVKKKTEALSTQKENFeKSLSQLLEERKAYINHLEPHTLQIY 179
                 4456777889999987468****************9988865 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   3.0    0.0063       5.1     442     487 ..       7      52 ..       3      56 .. 0.85
   2 ?   11.2  19.4   9.1e-05     0.074      66     182 ..      50     169 ..      43     177 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0063
                 HHHHSTTTSTTTHHHHHHHT-TT--HHHHHHHHHTTTTTSGGGTHH CS
        EzrA 442 yleelkeasdeieelakeLekkpinikevnkrldeardlveklyek 487
                 +l +l+e++++i e +k L+k p++i++++k+ ++ ++ v + +++
  CCG91535.1   7 FLLKLQEMDKKIIERRKLLSKIPVEIEKIQKQFKIEEEKVAQNKKE 52 
                 6778999999999999999999999999999999998888887765 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 9.1e-05
                 HHHHHHHHHHHTHHHHHT-GGGT--S-SHHHHHT....THHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHHT--TTTTHHH CS
        EzrA  66 kkkwdeiktkklpeieellfeaeelldkykfkka....kkklaeleeeldeveekikkileelkelteseeknreeieklkekYrelrkkllanrfsyg 160
                 kk+  ++   +++e e ++  ++  +++yk++++    +++ ++l  ++d++ +ki ++ +++ +l+e++e+ ++ ++++  ++++l  +++++ ++++
  CCG91535.1  50 KKELLQVDL-SIKEMEAEIAGLKSKINQYKIQQLstrkNEEYQALSHQIDHATQKISDLEDKVLDLLEKKERISKTYKEADIQFHHLALEVKKKTEALS 147
                 555555444.8999*****************9873333567889******************************************************* PP

                 HHHHHHHHHHHHH--------- CS
        EzrA 161 ealeelekqleniekefsefee 182
                 + +e++ek l+++ +e +++ +
  CCG91535.1 148 TQKENFEKSLSQLLEERKAYIN 169
                 *************999888766 PP

>> Par3_HAL_N_term  N-terminal of Par3 and HAL proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.9   0.00019      0.15      37      82 ..      83     128 ..      61     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00019
  Par3_HAL_N_term  37 atekdsdslvkvhsleskdggiLDpDDlladvvdDrdklvavfeeq 82 
                       t k+ ++    h+++++   i D +D + d+++ ++++  +++e 
       CCG91535.1  83 STRKNEEYQALSHQIDHATQKISDLEDKVLDLLEKKERISKTYKEA 128
                      4678888888999***************************999986 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  19.7   0.00022      0.18      90     217 ..      29     162 ..      10     167 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00022
   PspA_IM30  90 laeikslekqaealetqlaqqrsaveqlrkqlealetkieelkakkellkarekaakaqeavqkslgklstesatdslerieeKieerearadaaaela 188
                   ei++ +kq + +e+++aq ++   q+  ++++ e+ i+ lk+k++ +k+++ + + +e+ q+ +++++   at++   +e+K++++ ++ +  ++  
  CCG91535.1  29 PVEIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEMEAEIAGLKSKINQYKIQQLSTRKNEEYQALSHQID--HATQKISDLEDKVLDLLEKKERISKTY 125
                 5689999******************************************************999999987..578888889999988654444444444 PP

   PspA_IM30 189 esaqd.........ldakleaagiqkevseqvlarlka 217
                  +++d          ++k ea+  qke+ e+ l++l +
  CCG91535.1 126 -KEADiqfhhlaleVKKKTEALSTQKENFEKSLSQLLE 162
                 .3333334444455788888888888875555555433 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.4    0.0023       1.9      25      84 ..      11      70 ..       8      77 .. 0.93
   2 ?    8.6   2.8    0.0028       2.3      25      68 ..      79     122 ..      66     129 .. 0.59
   3 ?    3.9   1.1     0.081        66      40      68 ..     133     161 ..     119     178 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0023
     BLOC1_2 25 LeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseL 84
                L+++ ++ +e+ k l+++  ++ek  ++ + ++e+++++++++ q++ +++e+e+ ++ L
  CCG91535.1 11 LQEMDKKIIERRKLLSKIPVEIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEMEAEIAGL 70
                99****************************************************988766 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0028
     BLOC1_2  25 LeklNeaasekykklkdvaaslekkleklnekyeelqpylqqid 68 
                 +++l ++ +e+y++l+++++++++k+++l+ k   l +++++i 
  CCG91535.1  79 IQQLSTRKNEEYQALSHQIDHATQKISDLEDKVLDLLEKKERIS 122
                 45555666666666666666666666666666555555555554 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.081
     BLOC1_2  40 kdvaaslekkleklnekyeelqpylqqid 68 
                  + a +++kk e+l+ ++e++++ l+q+ 
  CCG91535.1 133 HHLALEVKKKTEALSTQKENFEKSLSQLL 161
                 5677889999***********99999974 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.9    0.0041       3.4      63     135 ..      12      84 ..       9      88 .. 0.90
   2 ?    7.2  10.3    0.0029       2.4      51     154 ..      85     189 ..      78     209 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0041
       Atg14  63 knkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiak 135
                 +   +k+ e ++l +++  ++++++++ +   +++++ kk+l + + ++k++ ++++ l++++++++ +q+++
  CCG91535.1  12 QEMDKKIIERRKLLSKIPVEIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEMEAEIAGLKSKINQYKIQQLST 84 
                 55667888999999999999**********************************************9998875 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0029
       Atg14  51 gke.eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiaklqdaikrieqkls 148
                 +k+ e + l+ +i++ ++k+++l  ++ dl e++++++++ ++ + +      +++k+ ++l++ ++  e+  ++l e+rk+ i+ l  ++ +i q ++
  CCG91535.1  85 RKNeEYQALSHQIDHATQKISDLEDKVLDLLEKKERISKTYKEADIQFHHLALEVKKKTEALSTQKENFEKSLSQLLEERKAYINHLEPHTLQIYQRIA 183
                 33345678999****************************************************************************999999999888 PP

       Atg14 149 slsskt 154
                 + ++ t
  CCG91535.1 184 ASKPGT 189
                 776655 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  24.3   0.00088      0.72     133     277 ..      21     166 ..      12     182 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00088
        Spc7 133 RmqllegLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqe.aaeelesidkeeLeelreelaelkaeieekkkelaelqeqle 230
                 R +ll+++  ++e++ ++++ ++e+++++++el ++  +++e +ae+     k+++ + ++l++ ++ee ++l ++++ + ++i+ +++++ +l e++e
  CCG91535.1  21 RRKLLSKIPVEIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEMEAEIAGLKSKINQyKIQQLSTRKNEEYQALSHQIDHATQKISDLEDKVLDLLEKKE 119
                 889******************************99999999999988888888877677999999********************************** PP

        Spc7 231 eleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevka 277
                 +++++ +e++ q ++l  e++++ + l  +k+  e+ +s+l ee ka
  CCG91535.1 120 RISKTYKEADIQFHHLALEVKKKTEALSTQKENFEKSLSQLLEERKA 166
                 ********************************999999999887666 PP

>> DUF1732  Domain of unknown function (DUF1732)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.4    0.0013       1.1      14      76 ..      30      92 ..      19     101 .. 0.82
   2 ?    4.0   0.9     0.059        48      55      85 .]     124     154 ..      85     154 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
     DUF1732 14 EElvRlkshlkelrelleeeesvGrkLdFllQElnReanTigskandleitklvvelKseiek 76
                 E++++++ +k  +e ++++++   ++d  ++E++ e+  + sk n+ +i++l  +  +e + 
  CCG91535.1 30 VEIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEMEAEIAGLKSKINQYKIQQLSTRKNEEYQA 92
                57888888888888888888888899*************************998776666555 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.059
     DUF1732  55 gskandleitklvvelKseiekirEqvqNie 85 
                 + k +d++ ++l++e+K++ e +  q +N e
  CCG91535.1 124 TYKEADIQFHHLALEVKKKTEALSTQKENFE 154
                 4588999****************99999976 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   5.3   0.00016      0.13      11      68 ..      44      99 ..      30     107 .. 0.87
   2 ?    2.7   1.0      0.17   1.4e+02       6      62 ..     115     171 ..     107     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
  TolA_bind_tri 11 rilearsqlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrk 68
                   ++++++++ ll++   ++++++e++ L+ +i  +qy+++ql +r ++ Y+ l   + +
     CCG91535.1 44 EKVAQNKKELLQVDLSIKEMEAEIAGLKSKI--NQYKIQQLSTRKNEEYQALSHQIDH 99
                   455555799*******************999..89***************99776655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.17
  TolA_bind_tri   6 varLErilearsqlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldl 62 
                    +++ Eri++  +++ ++ +    + ++    L  q E ++  l+ql+e  +   + l
     CCG91535.1 115 LEKKERISKTYKEADIQFHHLALEVKKKTEALSTQKENFEKSLSQLLEERKAYINHL 171
                    6677999999999999999999999999999999************99888766555 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   5.2      0.24   1.9e+02      74     138 ..      22      82 ..       4      92 .. 0.64
   2 ?   12.1  12.7   0.00014      0.11      70     188 ..      60     177 ..      55     187 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.24
         LXG  74 eefLkkikealesvepssngfidedfLeqelenglkkakevteelkdeinkilasvsdivslpel 138
                  + L+ki  ++e    +++ +i+e+++  + +++l ++  +++e++ ei   +++++++ ++++l
  CCG91535.1  22 RKLLSKIPVEIEK--IQKQFKIEEEKVA-QNKKELLQVDLSIKEMEAEIAGLKSKINQY-KIQQL 82 
                 4457777777777..5677888888888.777888888888888888888888777765.44444 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00014
         LXG  70 ieqyeefLkkikealesvepssngfidedfLeqelenglkkakevteelkdeinkilasvsdivslpelddsevkdslqkakkkvqetiekledfdqeq 168
                 i ++e++ +  k+++++++ ++    + +  +  l++++++a +++++l+d++ + l++   i ++ +  d ++++ + ++kkk++   ++ e+f+ ++
  CCG91535.1  60 IKEMEAEIAGLKSKINQYKIQQLSTRKNEEYQ-ALSHQIDHATQKISDLEDKVLDLLEKKERISKTYKEADIQFHHLALEVKKKTEALSTQKENFEKSL 157
                 789999999999*****999999999999999.****************************************************************** PP

         LXG 169 ksalanlesdlkalktyvse 188
                 +++l++ ++ +++l+  + +
  CCG91535.1 158 SQLLEERKAYINHLEPHTLQ 177
                 **********9999866555 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  29.0    0.0033       2.7      34     166 ..      31     169 ..      10     182 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0033
         GAS  34 eieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknye......kdkqslknlkarlkelekelkdlkwehevleqrfekvekerdely 126
                 eie+++k+ +  e ++++ ++e  +    +k+ e+e++ L+ ++++y+      ++ +++++l  ++ +++++++dl+ +   l ++ e+++k ++e  
  CCG91535.1  31 EIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEMEAEIAGLKSKINQYKiqqlstRKNEEYQALSHQIDHATQKISDLEDKVLDLLEKKERISKTYKEAD 129
                 899999999999999999999999999999999999999999999997211111334455566666666666666666666666666666666666666 PP

         GAS 127 kkfeaaiqevqqktglknllLekklkalqeelEkkeaqle 166
                  +f +   ev++kt+  ++  e+  k+l++ lE+++a ++
  CCG91535.1 130 IQFHHLALEVKKKTEALSTQKENFEKSLSQLLEERKAYIN 169
                 6666666666666666666666666666666666666554 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  12.1     0.001      0.83      40     108 ..      11      79 ..       8      82 .. 0.93
   2 ?    5.6   2.9     0.024        19      74     106 ..      82     114 ..      80     127 .. 0.83
   3 ?    1.2   5.6      0.57   4.6e+02       7      34 ..     138     165 ..     114     172 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.001
     DUF4200  40 eqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekleeykk 108
                  qe+ +++++  k l ++  + ++ +k+ ++e+++  + ++e+ +   +i+++++ei+ l+ k+++yk+
  CCG91535.1  11 LQEMDKKIIERRKLLSKIPVEIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEMEAEIAGLKSKINQYKI 79 
                 57888899999999999999***********************************************96 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.024
     DUF4200  74 lkkekeaeikklkaeietlkseiekleekleey 106
                 l  +k++e + l ++i++  ++i+ le+k+ ++
  CCG91535.1  82 LSTRKNEEYQALSHQIDHATQKISDLEDKVLDL 114
                 567899999999999999999999999999776 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.57
     DUF4200   7 emfevqealeakkeeiqrleealkqree 34 
                 e+ + +eal+++ke++++   +l ++++
  CCG91535.1 138 EVKKKTEALSTQKENFEKSLSQLLEERK 165
                 2333444444444444444444433333 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.6     0.049        40       5      62 ..      19      84 ..      16      93 .. 0.77
   2 ?    9.2   7.3    0.0019       1.5       3      82 ..      92     171 ..      88     185 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.049
      CENP-H  5 ieqrdelss...ellklsqelrelqeeltevekenlrlkrknrelaaellelakekesek.....e 62
                ie+r  ls+   e++k++++ +  +e++++ +ke l++    +e+ ae++ l+++ ++ k     +
  CCG91535.1 19 IERRKLLSKipvEIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEMEAEIAGLKSKINQYKiqqlsT 84
                66666666433389***********************************99999888877643321 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0019
      CENP-H   3 plieqrdelssellklsqelrelqeeltevekenlrlkrknrelaaellelakekesekeklkeelekleaelkksrqrw 82 
                 +l +q+d++ +++ +l+ ++ +l+e+ +++ k  +++  + + la e+ +++++ +++ke+ +++l++l +e k+++++ 
  CCG91535.1  92 ALSHQIDHATQKISDLEDKVLDLLEKKERISKTYKEADIQFHHLALEVKKKTEALSTQKENFEKSLSQLLEERKAYINHL 171
                 678999******************************************99999989999999999999999999988765 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.4     0.038        31      29      55 ..      59      85 ..      43      87 .. 0.79
   2 ?    0.9   0.1      0.69   5.6e+02      21      32 ..     102     113 ..      87     126 .. 0.68
   3 ?    7.1   1.8    0.0085       6.9       6      53 ..     133     180 ..     129     183 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.038
       TSC22 29 rnseleeENslLkalaspeqleqlsak 55
                 ++e+e E + Lk+ +++  ++qls++
  CCG91535.1 59 SIKEMEAEIAGLKSKINQYKIQQLSTR 85
                68899999999***9999999999875 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.69
       TSC22  21 ekIkeLeernse 32 
                 +kI +Le+++  
  CCG91535.1 102 QKISDLEDKVLD 113
                 577777777654 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0085
       TSC22   6 sHLmfAVrEeVevLkekIkeLeernseleeENslLkalaspeqleqls 53 
                  HL + V+   e L ++  + e+  s+l eE + + +++ p +l+ ++
  CCG91535.1 133 HHLALEVKKKTEALSTQKENFEKSLSQLLEERKAYINHLEPHTLQIYQ 180
                 5*******************************************9887 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   5.3     0.028        23      42      90 ..      20      64 ..       9      66 .. 0.69
   2 ?    4.6  13.8     0.048        39      26      87 ..      43     108 ..      32     122 .. 0.82
   3 ?    7.1   2.9     0.008       6.5      23      78 ..     119     174 ..     113     191 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.028
        YlqD 42 qakrlikeikkqsaq...qieeiqeqvekekserlekkkqllqqleqvqkLe 90
                + ++l++       +   +ie+iq+q++ e++++ ++kk+llq    ++++e
  CCG91535.1 20 ERRKLLS-------KipvEIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEME 64
                2222222.......24569**********************99777777666 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.048
        YlqD  26 qaqieqldkelqqLefqakrlikeikkqsaq....qieeiqeqvekekserlekkkqllqqleqvq 87 
                 ++++ q +kel q+++  k++++ei+  + +    +i+++ ++ ++e + + +++++++q++++++
  CCG91535.1  43 EEKVAQNKKELLQVDLSIKEMEAEIAGLKSKinqyKIQQLSTRKNEEYQALSHQIDHATQKISDLE 108
                 477889999999***********9998777677889999999999999999999999999999887 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.008
        YlqD  23 qqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkq 78 
                 +++++  +++d ++++L ++ k+  + +++q+++  +++ + +e++k+ +++   +
  CCG91535.1 119 ERISKTYKEADIQFHHLALEVKKKTEALSTQKENFEKSLSQLLEERKAYINHLEPH 174
                 56777778888888888888888888888866655555555555555544444433 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   2.6      0.11        86       7      34 ..      22      49 ..      10      50 .. 0.79
   2 ?   14.1   5.8   5.2e-05     0.042       6      63 ..      49     103 ..      47     114 .. 0.82
   3 ?    1.5   9.0      0.43   3.5e+02       2      49 ..      82     127 ..      81     164 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.11
  ABC_tran_CTD  7 qreleeleaeIeaLEeeiaeleaeladp 34
                  ++ l +++ eIe+++++ +  e+++a++
    CCG91535.1 22 RKLLSKIPVEIEKIQKQFKIEEEKVAQN 49
                  444779*********9998888888875 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 5.2e-05
  ABC_tran_CTD   6 eqreleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelyer 63 
                    ++el +++  I ++E+eia l  ++++  +    +  ++ ++e+++l ++++ ++++
    CCG91535.1  49 NKKELLQVDLSIKEMEAEIAGLKSKINQYKIQ---QLSTRKNEEYQALSHQIDHATQK 103
                   699************************98765...66788888888888888888765 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.43
  ABC_tran_CTD   2 lsykeqreleeleaeIeaLEeeiaeleaeladpelysdpeklaelsae 49 
                   ls ++  e+++l  +I+   ++i++le+++ d    ++ e+++++ +e
    CCG91535.1  82 LSTRKNEEYQALSHQIDHATQKISDLEDKVLDL--LEKKERISKTYKE 127
                   7889999*********************99954..4666776666655 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   7.0     0.052        43     330     375 ..      30      75 ..       9      80 .. 0.69
   2 ?    8.8  11.9   0.00079      0.64     317     415 ..      75     171 ..      67     174 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.052
      DUF812 330 eeleelqeqieeleskieeleeeikklessikqveeeleeekeene 375
                  e+e++q+q++  e+k+++ ++e+ +++ sik++e e+  +k++ +
  CCG91535.1  30 VEIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEMEAEIAGLKSKIN 75 
                 4677777777777777777777777777777777777777776655 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00079
      DUF812 317 kaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalveasaqrlvel 415
                 ++ + ++l ++++ee ++l+ qi+++ +ki+ le+++ +l ++ ++++++++e + +   l+   ++kkkt +l  + e+  + L +l+e+ ++ + +l
  CCG91535.1  75 NQYKIQQLSTRKNEEYQALSHQIDHATQKISDLEDKVLDLLEKKERISKTYKEADIQFHHLAL--EVKKKTEALSTQKENFEKSLSQLLEERKAYINHL 171
                 5667899********************************************999998888875..5566666666666666677888888887777666 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  12.3     0.014        11     201     333 ..      24     164 ..       6     192 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.014
       LMBR1 201 elkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilk.....kvPeeiaeklks...nenkteeslaklekqlikalqkrerte 291
                  l+k+ +e++k++++ +  e+++ + +ke+ +++ si+e +     l+  ++     +  +  +e+ ++   +   +++++++le ++   l+k+er++
  CCG91535.1  24 LLSKIPVEIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEMEAEIAGLKSKINqykiqQLSTRKNEEYQAlshQIDHATQKISDLEDKVLDLLEKKERIS 122
                 567778888888888888888888888888888888888884333333333323222333333333333665666688899999999999999999999 PP

       LMBR1 292 kqwkrllekalelediiknksskekefkssessrrgefakqg 333
                 k++k++  ++ +l   +k+k+++    k++++++++++ +++
  CCG91535.1 123 KTYKEADIQFHHLALEVKKKTEALSTQKENFEKSLSQLLEER 164
                 999986666655554445555544444445554444444444 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  21.8     0.018        15      11     150 ..      31     166 ..       8     175 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.018
        Fez1  11 EislLKqQLkdsqaevtqklseivalkaqlrelrakleekeeeikele..esleektlelevcenelqrkkseaellrekvekleeelkelreelsels 107
                 Ei  + +Q k     v+q  +e++++  +++e++a++    ++i++++  + ++ k++e + + +++++++++ + l++kv  l e+ +++ ++++e+ 
  CCG91535.1  31 EIEKIQKQFKIEEEKVAQNKKELLQVDLSIKEMEAEIAGLKSKINQYKiqQLSTRKNEEYQALSHQIDHATQKISDLEDKVLDLLEKKERISKTYKEAD 129
                 677778888888888888888888888888888888888888877655214445566677777777777777777777777777766666666666655 PP

        Fez1 108 leeeeaalesdeakaqrqeaeeleelkreverlraeLkeerqk 150
                  + ++ ale ++      ++e+l++ k++ e+  ++L eer++
  CCG91535.1 130 IQFHHLALEVKK------KTEALSTQKENFEKSLSQLLEERKA 166
                 444443333222......3345666666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2874  (0.160299); expected 358.6 (0.02)
Passed bias filter:                      741  (0.0413297); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.50
# Mc/sec: 1410.93
//
Query:       CCG91536.1  [L=361]
Description: Transaldolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-75  253.5   0.0    2.7e-75  253.4   0.0    1.0  1  TAL_FSA   Transaldolase/Fructose-6-phosphate aldolase


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.4   0.0   1.5e-79   2.7e-75       1     286 [.      14     350 ..      14     351 .. 0.97

  Alignments for each domain:
  == domain 1  score: 253.4 bits;  conditional E-value: 1.5e-79
                 EEEE---HHHHH.....HHHHTT---EEE--HHHHHH..TTS.-HHHHHHHHHHH................................H-S-EEEE-S-. CS
     TAL_FSA   1 lvlDtadrelik.....klleekgiqgvTtNPsliekaikykalydeaieeikkegkkvkeaydkLavedilealdll........gadgrvslEVdar 86 
                 l+lD+++re+++     k+++e  ++g+T+NP+++  ai+ ++ yd +i e +++g + +e++ +La+ed+++a+dl+        g+dg+vslEV++ 
  CCG91536.1  14 LWLDNISREMLDkgvlkKYIDEYSVTGLTSNPTIFDHAIARSHFYDRSILEYSHKGLEGEELFFQLAIEDLRRAADLFspiyertfGKDGWVSLEVSPL 112
                 7************************************************************************************************** PP

                 ..-SHHHHHHHHHHHHTT-T..TEEEEEESSHHHHHHHHHHHHTT--EEEEEE-SHHHHHHHHHH.................T-SEEEEBHHHHHTTT. CS
     TAL_FSA  87 lsddteatieeArrlialyerenvlIKiPateeGikAikeLkkeGinvnvTliFsleqalaaaea.................gasviSpFvgRiddllk 168
                 l++d+++t+ eA+rl+++++r+n++IKiP+t+eG++Ai++ + +Gi +nvTl+F+++++l+aaea                   sv+S+Fv+R+d+++ 
  CCG91536.1 113 LAYDAQNTLLEAQRLHQMFQRPNLFIKIPGTKEGLPAIEKSIFQGIPINVTLLFTPQHYLEAAEAymrglerriaeglplenVFSVASLFVSRWDKAT- 210
                 ***************************************************************************999887559**************. PP

                 ............S-HHHHHHHHHHHHHHH.T..................-.S-EEEEBS--SHHHHHHHHT-SEE.EE-HHHHHHHT--HHH....... CS
     TAL_FSA 169 kleek.dklkgkddgvalvkeiynyykkl.g..................y.sTkvmaasfrnveeveelagcdtv.Tippkllealakhgktseklee. 244
                  +++  d+l+++  g+a +k+ y++y+++ +                  + sT++++++ +++ +v++l+++dt+ T+p+++l a+a+hg+  e l+  
  CCG91536.1 211 -MNRVgDSLRNQ-LGIAIAKKTYKAYRDVlEserwkqlaqkkanaqlllWaSTGTKDPQASDILYVKNLVAPDTInTMPEETLLAFADHGQIGEVLPRd 307
                 .44445788889.****************779*****************99*****************************************9888888 PP

                 ..........................HHHHHHHHHHHHHHHH- CS
     TAL_FSA 245 .eeieklleklfrlginedavaeelldegikkFakdlekllas 286
                   ++++++++  + gi+ d++ ++l++eg ++F +++++ll+s
  CCG91536.1 308 gGNADEIIAQYHQQGISVDELGQQLQKEGAESFVNSWNDLLSS 350
                 899999**********************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2477.76
//
Query:       CCG91537.1  [L=92]
Description: hypothetical protein MFUM_130001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       133  (0.00741815); expected 358.6 (0.02)
Passed bias filter:                      126  (0.00702772); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 658.17
//
Query:       CCG91538.1  [L=74]
Description: hypothetical protein MFUM_130002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 551.25
//
Query:       CCG91539.1  [L=57]
Description: hypothetical protein MFUM_130003 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       114  (0.00635841); expected 358.6 (0.02)
Passed bias filter:                      104  (0.00580066); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 476.65
//
Query:       CCG91540.1  [L=53]
Description: hypothetical protein MFUM_130004 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       158  (0.00881254); expected 358.6 (0.02)
Passed bias filter:                      151  (0.00842211); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 450.73
//
Query:       CCG91541.1  [L=50]
Description: hypothetical protein MFUM_130005 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 335.09
//
Query:       CCG91542.1  [L=130]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-22   80.8   0.0    1.4e-22   80.5   0.0    1.0  1  GGACT     Gamma-glutamyl cyclotransferase, AIG2-like
    0.00028   21.2   0.0    0.00044   20.6   0.0    1.3  1  AIG2_2    AIG2-like family


Domain annotation for each model (and alignments):
>> GGACT  Gamma-glutamyl cyclotransferase, AIG2-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   1.6e-26   1.4e-22       1     119 [.      10     122 ..      10     123 .. 0.89

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 1.6e-26
                 EEESSTTSTTSCCCHHHHCSECEEEEEEEECCTBEEEE.ETTTEEEETTSSE.EEEEEEEE-HHHHHHHHHCT.TTTTSEEEEEEEEEC..TTS-EEEE CS
       GGACT   1 vFvYGtLkrgepnhqrlllgarflesgpatlkgyrlydlggkypalvpgdgekVkGelyevddeelarLDelEpeepseYereevkvev.ledgeqvea 98 
                 +FvYGtL++g+     l +  +f+++g+  l ++ +ydl g+ypa++pg+g+ VkGely v+ + l++LD+lE + p +++re+v +++ +++  q+ea
  CCG91542.1  10 IFVYGTLRKGQCRNSILSCC-EFIGLGT--LYHFVMYDL-GEYPAIIPGNGK-VKGELYIVNRKILKELDYLE-GVPFLFKREKVSISLlSSEYHQLEA 102
                 7*******998777644333.6887777..********8.68**********.********************.99*******77777789999***** PP

                 EEEEETT..GGGCCS-S-SS- CS
       GGACT  99 wvYvyageeeegdrliesgdW 119
                 ++Yvy + e ++++li++gdW
  CCG91542.1 103 YAYVYCN-EIQNKPLIKHGDW 122
                 *****66.7999999****** PP

>> AIG2_2  AIG2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.9e-08   0.00044       2      58 ..      58     115 ..      57     124 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.9e-08
      AIG2_2   2 VfGvlweidlenlkdLDkqEgvedgiyrpievrVst..atgeevlaraYvlsnqpetkP 58 
                 V G l+ ++ + lk+LD  Egv++ ++++ +v++s   ++ ++++a aYv+ n+ + kP
  CCG91542.1  58 VKGELYIVNRKILKELDYLEGVPF-LFKREKVSISLlsSEYHQLEAYAYVYCNEIQNKP 115
                 8899********************.9********998455577*******999876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 869.03
//
Query:       CCG91543.1  [L=196]
Description: Nucleoside-triphosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-48  163.1   0.0    7.6e-48  162.9   0.0    1.0  1  Ham1p_like  Ham1 family


Domain annotation for each model (and alignments):
>> Ham1p_like  Ham1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   0.0   4.3e-52   7.6e-48       1     186 [.       4     189 ..       4     190 .. 0.87

  Alignments for each domain:
  == domain 1  score: 162.9 bits;  conditional E-value: 4.3e-52
                 EEEC-S-HHHHHHHHHHTTTECCCE.EECCC..CEE----BSSSHHHHHHHHHHHHHH.H.TS-EEEEEEEEEEGGGTTTBGGGTTTTTHTTCHHHHHH CS
  Ham1p_like   1 ivfaTgNkgKlrevkeilaeellevkslkel..elpeveEtqgtfeenalkKaraaae.a.glpvladDsgLevdaLnglPGvysarfagegaedeenl 95 
                 i++a++N  K +e++++l ++++ v   +el  + p  +E  +++ ena++Ka a+++ + gl v+ dDsgLev+ L+g P v+s+r+age+a++een+
  CCG91543.1   4 ILLASSNLYKWKEFSRLLYPNVV-VLPPEELrrHFP--PESFTSYLENARLKAMALSDvYsGL-VVSDDSGLEVNSLKGEPEVRSSRYAGEKANSEENI 98 
                 799**************975333.334555543444..5***************999853477.*********************************** PP

                 HHHHHHCTHTT.S--EEEEEEEEEEEETTTTEEEEEE..EEEEEEE-SS.--SSSSTTGGGEEETT-SS.BTTTS.CHHHHHHSHHHHHHHHHHH CS
  Ham1p_like  96 aklleeleeee.edrsArfvcvlaladpeeeeellfe..GeveGeiveeprgeggfGyDpiFvpeegek.tfaelskeeknaiShRgkAleklle 186
                 akll++l++++  dr+Arfvc l+l+++ ++  +lfe    + G i++ep+g+ggfGyD+iF+p +g++ t+ael++++k+ iShRgkA ++l++
  CCG91543.1  99 AKLLRNLQSAKsLDRTARFVCSLVLVKQ-KK--ILFEttAFCYGIIATEPKGHGGFGYDSIFIP-QGYSlTMAELTEQQKDMISHRGKACQQLKA 189
                 *******9966699***********985.44..55552378***********************.55777***********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1331.46
//
Query:       CCG91544.1  [L=234]
Description: Nucleoside-diphosphate-sugar pyrophosphorylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-27   95.5   0.0    4.5e-27   95.2   0.0    1.0  1  NTP_transferase  Nucleotidyl transferase
    3.5e-11   43.7   0.0    3.5e-11   43.7   0.0    1.1  1  NTP_transf_3     MobA-like NTP transferase domain
      4e-07   30.0   0.0    5.4e-07   29.6   0.0    1.2  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.0   7.5e-31   4.5e-27       1     219 [.       2     213 ..       2     227 .. 0.91

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 7.5e-31
                      EEEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTH CS
  NTP_transferase   1 kavILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaa 94 
                      ka+ILa G+GtR+  Lt++++k+++ v gk ++++  +  l ++   e  +++  ++++ + e++k+g+ +g+++ + ++++++gt +A ++a+
       CCG91544.1   2 KAIILAAGKGTRMGSLTHDVPKPMLMVKGK-PILEWIIRGLHQEAKVEHFCIVVGYKAEKILEYFKDGQFLGIKIDYRFQKKQDGTGKAPLVAK 94 
                      79****************************.***********955555599999**************************************** PP

                      HHHTTSSE..EEEEETTEEEEST..THHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTSBEEEEECS-SSHSH..CSEECCSEEEEET CS
  NTP_transferase  95 elledeksdelvlvLggDhlikd..ayeeavkkaiekaakgtvtfgivpveeateyGvieadeegrverfvEKPkeaka..selassGiYvfns 184
                      +l+ +e     ++   gD+l +d  +y ++++  + +      ++g+++ ++ ++ G +  d++g++++++EKP+ +++    + ++GiY+  +
       CCG91544.1  95 DLISNEP----FFLSYGDILLGDcrEYGRMIRAYKGD-----GLVGLTDGNDLSKGGAVFLDSDGQIIDIIEKPQDPALskGAFYNAGIYLISP 179
                      ****999....677889*****888888888766555.....559********************************99777899********* PP

                      THHHHHHHCCHHHTTSSCHHHHHHHHHHHTTEEEE CS
  NTP_transferase 185 evllflakdleelkrgedeitdilpkaleegkval 219
                      ++++f  ++l  ++rge e+td+l+   ++gk   
       CCG91544.1 180 KIFDFM-ESLCLSPRGEYELTDALRMFSQHGKLYG 213
                      ******.7799999***********9999887664 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   5.8e-15   3.5e-11       1      98 [.       3     111 ..       3     203 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 5.8e-15
                   EEEEEESS-TTTTT.....THHHHCCCCCCHHHHHHHHHCTT..-CEEEEECSH..CHHHHHHTTC.....TS-EEE-TTSS-SHHHHHHHHHHHH. CS
  NTP_transf_3   1 aviLAGGrSsRmgg.....dKallplggkpllervldalraa.gvdevvvvggd..eevlaalarl.....gvrvvededpgkgplaslaaalraaa 84 
                   a+iLA+G+++Rmg+     +K++l ++gkp+le++++ l++  +v++ ++v+g+  e++l+++++      ++++  ++ ++ g++++ + a + + 
    CCG91544.1   3 AIILAAGKGTRMGSlthdvPKPMLMVKGKPILEWIIRGLHQEaKVEHFCIVVGYkaEKILEYFKDGqflgiKIDYRFQK-KQDGTGKAPLVAKDLI- 97 
                   79***********888889********************987579******9995567777666553332233333333.3455555555555554. PP

                   SSSCEEEEETT-TT CS
  NTP_transf_3  85 dadavlvlacDmPl 98 
                   +++++++  +D+ l
    CCG91544.1  98 SNEPFFLSYGDILL 111
                   55666666666555 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   9.1e-11   5.4e-07       2      54 ..       2      57 ..       1      69 [. 0.87

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 9.1e-11
                EEEEECTTSSCTT-S...SS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GG CS
        IspD  2 vvvipAAGsGkRmka...glpKqflelkgqtllehtvdallaskavdkivvvvsed 54
                 ++i AAG+G+Rm++   ++pK  l +kg+++le+ +++l ++ +v++  +vv  +
  CCG91544.1  2 KAIILAAGKGTRMGSlthDVPKPMLMVKGKPILEWIIRGLHQEAKVEHFCIVVGYK 57
                69**********9754449*****************************99998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1542.64
//
Query:       CCG91545.1  [L=307]
Description: Site-specific recombinase XerD [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-43  146.3   0.0    1.6e-42  145.2   0.0    1.5  2  Phage_integrase  Phage integrase family
    1.2e-15   57.5   1.7    1.7e-15   57.1   0.6    1.9  2  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
     0.0046   17.4   2.3      0.099   13.1   2.1    2.7  1  Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
  ------ inclusion threshold ------
      0.027   13.4   0.0      0.041   12.8   0.0    1.2  1  DUF3435          Protein of unknown function (DUF3435)
      0.042   13.9   0.3       0.08   13.0   0.3    1.5  1  Phage_int_SAM_6  Phage integrase SAM-like domain
      0.059   14.1   1.1       0.17   12.5   0.2    2.1  2  Phage_int_SAM_2  Phage integrase, N-terminal


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.1   3.2e+03      33      64 ..      41      72 ..      12      94 .. 0.59
   2 !  145.2   0.0   5.3e-46   1.6e-42       2     170 ..     118     288 ..     117     290 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
                     HT--HHHHTT-BGGGEECTTTEEEEEEEECSS CS
  Phage_integrase 33 tGlRisEllsLrvkdldlengvilvheregKg 64
                       +  + + +L+++ ++  + + +++e+ +Kg
       CCG91545.1 41 KFAFWAAIQQLTLQKIQSCHVEQFLKEESKKG 72
                     44444455666666666666666665555555 PP

  == domain 2  score: 145.2 bits;  conditional E-value: 5.3e-46
                      HHHHHHHHHHHH..CCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHH...CHC CS
  Phage_integrase   2 vltedeverlla..aleeslkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellska...lee 90 
                      +lt++e+e++l+  + +++l  rdk++lelly++GlR+sEl+sL+++  + e++ i+v    gKg+kera+p+++ a e+l  ++ k     ++
       CCG91545.1 118 FLTKKEIEKILNleFPNNPLGWRDKAILELLYSSGLRVSELISLKLEAYSPERSQIRV---LGKGNKERAIPVGKCAKEALDVYILKGrnfFVK 208
                      89********86326777****************************************...************************999999888 PP

                      CTTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCC CS
  Phage_integrase  91 aeksellfaskrgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthva 170
                      +++   +f+s+ gkpl+r+ +r+ + +++++ag++k++ pH +Rh+fa++Lle+g++lr +q+llGH++i+ttqiYthv+
       CCG91545.1 209 KKSGGEIFLSRIGKPLTRSRIRQLVIQYANQAGVDKKVYPHLFRHTFASHLLENGANLRIIQELLGHANIATTQIYTHVN 288
                      8888899***********************************************************************97 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.6   5.7e-19   1.7e-15       5      83 ..      18      95 ..      14      96 .. 0.95
   2 ?   -2.4   0.0       2.1   6.1e+03      26      56 ..     266     295 ..     254     298 .. 0.71

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 5.7e-19
                     HHHHHHTT-S-HHHHHHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS----------HHHHHHHHHHHHHHHHHT CS
  Phage_int_SAM_1  5 leyLikerglspnTlraYrrdLrrflkflaergkesleqlttedvraflaeleeeglsatslarrlsalrsFfqflvre 83
                     l+yL +e+++s nT + Yr+ L++f  ++a  ++ +l++++  +v +fl+e  ++gls++s+++ ++alr Ffqf + +
       CCG91545.1 18 LAYLAIEKSHSVNTQLLYRQVLEKFAFWAAI-QQLTLQKIQSCHVEQFLKEESKKGLSQSSIKIIIIALRHFFQFFKDR 95
                     78*****************************.*******************************************8765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.1
                      HHHHHHHHHH.TS--TTT--HHHHHHHHHS- CS
  Phage_int_SAM_1  26 Lrrflkflaergkesleqlttedvraflael 56 
                      Lr +++ l +    + +q+ t+  +++l+e 
       CCG91545.1 266 LRIIQELLGH-ANIATTQIYTHVNLKYLKEI 295
                      5555666666.66677778777777777765 PP

>> Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   2.1   3.3e-05     0.099      12      81 ..      25      95 ..      14      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.3e-05
  Phage_int_SAM_4 12 aglserTiksYlsaikrflrfl..kkkapeeltkedieaYlnyLanerklsastqknalnalsffykkvler 81
                     +  s +T+  Y + ++ f+ +   ++ + ++++  ++e++l     ++ ls s++k ++ al+ f++ + +r
       CCG91545.1 25 KSHSVNTQLLYRQVLEKFAFWAaiQQLTLQKIQSCHVEQFLKEES-KKGLSQSSIKIIIIALRHFFQFFKDR 95
                     5567899999*********9993334599**************77.999*****************998776 PP

>> DUF3435  Protein of unknown function (DUF3435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.4e-05     0.041     149     254 ..     194     302 ..     186     304 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
     DUF3435 149 mldipvFcr...aereaegvril...kdealtastlnsrlkrlgeiagfeepitpYklRrgaakalneSgevseaqrnlilqHassrtFlkhYlsqkvd 241
                  ld++++      ++++ g +i+     ++lt s++++ + + +  ag ++++ p+ +R   a +l e + +     + +l+Ha+++t  + Y ++++ 
  CCG91545.1 194 ALDVYILKGrnfFVKKKSGGEIFlsrIGKPLTRSRIRQLVIQYANQAGVDKKVYPHLFRHTFASHLLE-NGANLRIIQELLGHANIATT-QIYTHVNL- 289
                 566666632122356666666663233589*******************************9999888.455666667899*****997.77878874. PP

     DUF3435 242 kdvqavvlglppq 254
                 k ++++ l++ p+
  CCG91545.1 290 KYLKEIHLRCHPR 302
                 4457777777665 PP

>> Phage_int_SAM_6  Phage integrase SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   2.7e-05      0.08      71     132 .]      35      96 ..      11      96 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
  Phage_int_SAM_6  71 yanPllklyeyliklelaslkeideellseflaiet.aslsdAskknyrialinfFgfidkqn 132
                      y + l+k+    + ++l +l++i+   +++fl  e+  +ls+ s k   ial  fF+f +++n
       CCG91545.1  35 YRQVLEKFAFWAAIQQL-TLQKIQSCHVEQFLKEESkKGLSQSSIKIIIIALRHFFQFFKDRN 96 
                      66666776655555555.69999*********9876268*******************99887 PP

>> Phage_int_SAM_2  Phage integrase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   5.9e-05      0.17       8      83 ..      18      90 ..      12      96 .. 0.77
   2 ?   -1.0   0.0         1     3e+03      32      49 ..     255     272 ..     250     306 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.9e-05
  Phage_int_SAM_2  8 lkrlakqagGsykTvndrerilqrlareLlalniqvrdvkslKarHieayieerlaeeiskrtlqNemaalRsvlr 83
                     l  la +++ s +T+    ++l+++a   + + +     ++++  H+e++++e  ++++s+ +++  + alR +++
       CCG91545.1 18 LAYLAIEKSHSVNTQLLYRQVLEKFAFWAAIQQLT---LQKIQSCHVEQFLKEESKKGLSQSSIKIIIIALRHFFQ 90
                     66667777777777777777777777665555555...5566678***************************9887 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1
  Phage_int_SAM_2  32 lareLlalniqvrdvksl 49 
                      +a +Ll+ + ++r +++l
       CCG91545.1 255 FASHLLENGANLRIIQEL 272
                      555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2047.82
//
Query:       CCG91546.1  [L=242]
Description: Ribonuclease 3 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-30  105.6   0.0    3.3e-30  104.9   0.0    1.4  1  Ribonucleas_3_3  Ribonuclease-III-like
    8.2e-22   77.8   0.0    1.8e-21   76.8   0.0    1.6  1  Ribonuclease_3   Ribonuclease III domain
    2.7e-15   56.8   0.1    4.3e-15   56.2   0.1    1.3  1  dsrm             Double-stranded RNA binding motif
  ------ inclusion threshold ------
      0.015   15.5   0.2      0.092   13.0   0.1    2.2  2  DND1_DSRM        double strand RNA binding domain from DEAD E


Domain annotation for each model (and alignments):
>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.0   7.3e-34   3.3e-30       1     122 [.      16     142 ..      16     147 .. 0.91

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 7.3e-34
  Ribonucleas_3_3   1 deelleqaltHkSf....angrk...ghNerLefLGdavLklsvseyllekaek.degeltklraslvseeslaeiAkelgLgkvlrlrkgeee 86 
                      +++lle+altH S+    +   k   +  +rLefLGdavL l+++e l+e +   deg+ltklra+lvs++ l+ +++ lg+gk+lrl+kgee+
       CCG91546.1  16 NNQLLEEALTHPSYfvesM---KttgKDFQRLEFLGDAVLGLAITEKLYEIFPSfDEGKLTKLRAKLVSRKVLSPLSSSLGIGKYLRLGKGEEK 106
                      679***********75433...334478********************9996555*************************************** PP

  Ribonucleas_3_3  87 tegsgrekvladaleAliGAiyldkgaevaqefvee 122
                       +g+ + + la+ale++iGA yld+g e++++fv +
       CCG91546.1 107 NQGRTKPSNLANALESVIGALYLDGGWEKTKSFVFQ 142
                      *********************************986 PP

>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   3.9e-25   1.8e-21       1     105 []      42     132 ..      42     132 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 3.9e-25
                     HHHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHHHCTTCHCCHCHH..............HHCCSTTCHC..TSHHHHHHH CS
  Ribonuclease_3   1 erLeflGDavlklaittylfetypdahegrlsklrsklvsnenlarlakklglpkflrasefdpprnwlppgyklsddekeddd..adkvladvv 93 
                     +rLeflGDavl lait+ l+e +p+ +eg+l+klr+klvs ++l+ l  +lg+ k+lr                l+++e+++++  +++ la ++
      CCG91546.1  42 QRLEFLGDAVLGLAITEKLYEIFPSFDEGKLTKLRAKLVSRKVLSPLSSSLGIGKYLR----------------LGKGEEKNQGrtKPSNLANAL 120
                     7*********************************************************................9*****9998445556***** PP

                     HHHHHHHHHHCT CS
  Ribonuclease_3  94 EAliGaiyldsg 105
                     E++iGa+yld+g
      CCG91546.1 121 ESVIGALYLDGG 132
                     **********87 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.1   9.6e-19   4.3e-15       2      67 .]     165     230 ..     164     230 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 9.6e-19
                 HHHHHHHHHHTT.SEEEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH CS
        dsrm   2 KskLqeycqkkg.kppnyeyvseegpphslpkFvvtvkvngklygsGvgsnKKeAeqsAAedalekL 67 
                 K +Lqe++qkkg   p+y++v e g +h+ + ++v+v +++++ g+G+g++KKeAe +AA++a+ekL
  CCG91546.1 165 KGLLQEFLQKKGmELPVYRIVMESGEAHN-KWYEVEVLWKNQVLGKGSGKSKKEAELRAAKEAFEKL 230
                 899*********99999999999999999.9**********************************98 PP

>> DND1_DSRM  double strand RNA binding domain from DEAD END PROTEIN 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.34   1.5e+03      16      35 ..      24      44 ..      20      47 .. 0.76
   2 ?   13.0   0.1   2.1e-05     0.092       2      78 ..     163     229 ..     162     231 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.34
   DND1_DSRM 16 wgsPvYelhs.eagpdgkllf 35
                +  P Y ++s +++ + ++++
  CCG91546.1 24 LTHPSYFVESmKTTGKDFQRL 44
                778*******97766667776 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.1e-05
   DND1_DSRM   2 savqlLeelCeknkwgsPvYelhseagpdgkllflYkVvipgietslkgvvvifmpdklastkeeAkelaAeqvLea 78 
                 +++ lL+e+ +k+    PvY++  e+g ++ +  +Y V++   ++       +++ +   ++k+eA+  aA+++ e+
  CCG91546.1 163 NSKGLLQEFLQKKGMELPVYRIVMESGEAHNK--WYEVEVLWKNQ-------VLG-KGSGKSKKEAELRAAKEAFEK 229
                 67899**********************99655..99999865554.......233.334445556666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1837.65
//
Query:       CCG91547.1  [L=858]
Description: Glutamine synthetase adenylyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-77  260.5   0.1    4.2e-43  147.6   0.0    4.1  2  GlnE           Glutamate-ammonia ligase adenylyltransferase
    1.2e-50  171.4   1.1    7.4e-35  120.2   0.2    2.5  2  GlnD_UR_UTase  GlnD PII-uridylyltransferase
     0.0069   16.2   0.0      0.017   14.9   0.0    1.6  1  DUF294         Putative nucleotidyltransferase DUF294
     0.0078   16.0   0.1      0.017   14.9   0.1    1.5  1  DUF294_C       Putative nucleotidyltransferase substrate bind


Domain annotation for each model (and alignments):
>> GlnE  Glutamate-ammonia ligase adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   0.0   9.4e-47   4.2e-43       9     249 ..      19     240 ..      13     241 .. 0.85
   2 !  101.6   0.2     1e-32   4.7e-29       2     248 ..     494     700 ..     493     702 .. 0.91

  Alignments for each domain:
  == domain 1  score: 147.6 bits;  conditional E-value: 9.4e-47
                 HH-HHHHHHHHH-CHHHHHHCHCHHHTSGGGCCCHH.HHHH.HHTTTS-TC.HHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHH CS
        GlnE   9 aaSpfvaellarrprlldelldkellaepkeleaaa.aela.ealaavede.eqliealRqfkreellriavadllglltveevsraLseLaeavieaa 104
                 ++S+f + + + +p++  e+l++ ++++p+++  +   ++  e la+++ + e+ i+al+++k++e+lri++ d++ ++++eev++aLs La+  ie +
  CCG91547.1  19 DFSEFARTQFKAHPEWE-EWLKSPEISDPTHYRGLGrLKIDwEELANCSLNlENRIDALKKLKQREILRIGFFDFALVWSLEEVLKALSLLADFSIEII 116
                 56788888888888875.5555545555555544320222225688888888*********************************************** PP

                 HHHHHHHHHHHCTSCCCCTTCC-SEEEEE-HHHHTT---TT--EEEEEEE---TT-BSSSS-SBHHHHHHHHHHHHHHHHH--BTTB-S--EE-TTSTT CS
        GlnE 105 ldlllrqvvaelgtpvdekgepqqllvlGmGklGgaELnysSDiDliflydedaeteggkksidaakfftrlaqrlisiLsartadGvlYevDlrLRPs 203
                 ldl+ +q+    g+p+        +++l mGklGg ELnysSDiDl+fl++e +           ++++ rl++++++++s   a G  Y++DlrLRP+
  CCG91547.1 117 LDLAKAQL----GFPA------FPFAILSMGKLGGKELNYSSDIDLLFLHNESNGH---------HDMANRLGKKIVQLFSM--AYGGFYRIDLRLRPD 194
                 *9987654....5555......38***************************99988.........67788**********97..568899********* PP

                 GGGS-SEEEHHHHHHHHHHC--HHHHHHHCT-EECCE-HCHHHHHH CS
        GlnE 204 GesGplvlsvaAfekYyeeeartWErqAlirArvvagdaelkaafl 249
                 G+sG+lv s++  e Yy + ++ WEr+Ali+Ar  agd++l ++f+
  CCG91547.1 195 GNSGILVPSIKYCEYYYSALGESWERMALIKARKSAGDSALAYEFE 240
                 ****************************************999886 PP

  == domain 2  score: 101.6 bits;  conditional E-value: 1e-32
                 HHHHHHHHH-HHHHHHHHH-CHHHHHHCHCHHHTSGGGCCCHHHHHHHHTTTS-TCHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHH CS
        GlnE   2 kqlaevlaaSpfvaellarrprlldelldkellaepkeleaaaaelaealaavedeeqliealRqfkreellriavadllglltveevsraLseLaeav 100
                 + l ++++ S+f+ e+l ++p+l++e+  ++ l++ k++e+  +el ++      e+    + R +++ el+ri ++d+lg +++ ++ ++ ++Laea+
  CCG91547.1 494 ELLLRLFDSSSFFTEILLSQPDLFEEICRSDGLYTKKTVEEFFNELGRI------EKDHRTKYRLYRKGELFRIFLRDILGIASLIDIEEEYTALAEAI 586
                 67999*************************9999999999999999866......5566778999********************************** PP

                 HHHHHHHHHHHHHHHCTSCCCCTTCC-SEEEEE-HHHHTT---TT--EEEEEEE---TT-BSSSS-SBHHHHHHHHHHHHHHHHH--BTTB-S--EE-T CS
        GlnE 101 ieaaldlllrqvvaelgtpvdekgepqqllvlGmGklGgaELnysSDiDliflydedaeteggkksidaakfftrlaqrlisiLsartadGvlYevDlr 199
                 ++ a++l ++q                  +++G G+ Gg+EL+y+SD+D +f+ ++ + +                   l ++Ls+   +G+lY  D r
  CCG91547.1 587 LKHACNLCHAQS----------------NAIIGVGRFGGRELGYGSDLDCLFIGNNLNGA-----------------LELNRFLSEMLPSGILYNFDFR 652
                 ****99876654................368*********************98877766.................46889999999*********** PP

                 TSTTGGGS-SEEEHHHHHHHHHHC--HHHHHHHCT-EECCE-HCHHHHH CS
        GlnE 200 LRPsGesGplvlsvaAfekYyeeeartWErqAlirArvvagdaelkaaf 248
                 LRP+Ge Gp+vl  + +e+Yy++ a  WE+qAl rAr+v+g++e + +f
  CCG91547.1 653 LRPHGE-GPIVLEEEMYEHYYRSVAMFWEIQALHRARFVCGNEEYGRRF 700
                 *****6.************************************999887 PP

>> GlnD_UR_UTase  GlnD PII-uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.2   1.6e-38   7.4e-35       3     146 .]     263     400 ..     261     400 .. 0.92
   2 !   49.7   0.0   9.1e-17   4.1e-13      10     145 ..     728     852 ..     719     853 .. 0.85

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 1.6e-38
  GlnD_UR_UTase   3 mkakieeekarrgrsdtllepniKlGpGGlRdiefivqvlqlirGgrdpelrerstlealeelvergllteeeakelreayrflrrlehrLqllad 98 
                    +k +ie+e   +  ++     niKlG+GG+R+iefi+q +q+++G r p l++rstle+le+l+e +l++++e+++l+ ay f r++e+rLq++ad
     CCG91547.1 263 IKSRIEKELLDESTKK----RNIKLGEGGIREIEFIAQSFQVVYGARYPILQSRSTLETLEALTECQLIPRKEMEALKLAYYFFRQVENRLQMVAD 354
                    6677777766554444....6*************************************************************************** PP

  GlnD_UR_UTase  99 rqthrLpfdeeeqrrlaealgyredkaafmkelfqhaerVrrlfekll 146
                     qth +p++  +++++a +lg+  + ++f+++l++ + +Vr+lf+ ++
     CCG91547.1 355 LQTHLIPENIVQKKAIASSLGL--ELEPFEEKLETYRMTVRKLFSSIF 400
                    **********************..6677****************9875 PP

  == domain 2  score: 49.7 bits;  conditional E-value: 9.1e-17
  GlnD_UR_UTase  10 ekarrgrsdt.llepniKlGpGGlRdiefivqvlqlirGgrdpelrerstlealeelvergllteeeakelreayrflrrlehrLqlladrqthrL 104
                    +k+r+    +  +e  iK+ pGGl die+ +q+  +       ++re+s  +a   l++ +    ++a+  re y flrr+e +++  ++     L
     CCG91547.1 728 QKERDS---SvPVECRIKTAPGGLMDIELGLQIWLMGK-----QIREPSMWKAFLLLEKEE---GHTARLAREGYVFLRRIESVMRRERNSPISVL 812
                    222223...24699*******************98887.....888888888888888865...566788899*********************** PP

  GlnD_UR_UTase 105 pfdeeeqrrlaealgyredkaafmkelfqhaerVrrlfekl 145
                    p de+++++la++lg+ ++ka+fm+++f++ e+ r +fekl
     CCG91547.1 813 PIDEAAREKLARMLGF-DSKAKFMEAYFTTLESNRLVFEKL 852
                    ****************.***************999999987 PP

>> DUF294  Putative nucleotidyltransferase DUF294
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.8e-06     0.017      17      96 ..      98     175 ..      93     182 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.8e-06
      DUF294  17 aealarlvselndallrrlielaeeelgkppvpfallvmGSeGReEqtlktDqDnalvledeeeeaareyfaelaervne 96 
                  e++ +++s l d  ++ +++la+++lg p  pfa l mG  G +E  +++D D  +++++  ++ +++  ++l +++++
  CCG91547.1  98 LEEVLKALSLLADFSIEIILDLAKAQLGFPAFPFAILSMGKLGGKELNYSSDIDLLFLHNE--SNGHHDMANRLGKKIVQ 175
                 577888999999999***************************************9999999..66666677777776665 PP

>> DUF294_C  Putative nucleotidyltransferase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   3.8e-06     0.017      32     115 ..     277     366 ..     263     373 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.8e-06
    DUF294_C  32 hkgelDLKkagifplvdlvR....llALeag.ieatnTleRlkalaeagvlsaelaedlleayefllrlrlrhqleai.eageepdnyvd 115
                 +k+++ L ++gi+ +  +++    +++ +   +++++Tle l+al e + + ++++e+l+ ay f+ ++  r q+ a  +++  p+n v+
  CCG91547.1 277 KKRNIKLGEGGIREIEFIAQsfqvVYGARYPiLQSRSTLETLEALTECQLIPRKEMEALKLAYYFFRQVENRLQMVADlQTHLIPENIVQ 366
                 67778888888888888887222234445545689*********************************9999998665466666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 6131.27
//
Query:       CCG91548.1  [L=336]
Description: Delta-aminolevulinic acid dehydratase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.8e-131  435.8   0.0     1e-130  435.6   0.0    1.0  1  ALAD      Delta-aminolevulinic acid dehydratase


Domain annotation for each model (and alignments):
>> ALAD  Delta-aminolevulinic acid dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.6   0.0  5.6e-135    1e-130       2     316 ..      10     330 ..       9     331 .. 0.96

  Alignments for each domain:
  == domain 1  score: 435.6 bits;  conditional E-value: 5.6e-135
                 --GGGGGSSHHHHHHC-S----GGGEEEEEEEESS-SS-EE-TTSTT-EEEEGGGHHHHHHHHHHTT--EEEEEE.E-.SS-BSS-GGGGSTTSHHHHH CS
        ALAD   2 krlrrlrksealrelvretrlsasdlilplfvkegeeekeeiksmpgvyrlsvdelvkeveelvklgikavllFg.vp.eekdeegsealnedglvqra 98 
                 +r+rr r+s+++r+l++et+l+ s+li+plfv+e+ + keei smpg++r+s+++l++ ++el ++g++av+lF  vp e+kd++gs al+++gl+ +a
  CCG91548.1  10 RRPRRFRASRQIRSLLTETQLTISNLICPLFVQEK-KGKEEIGSMPGIFRYSLENLLEVCSELREKGLNAVALFPyVPkEKKDDSGSLALDPEGLIPKA 107
                 79*******************************85.6799**********************************7245455****************** PP

                 HHHHHHH-TTSEEEEEE-STTTBSS-SSSEEESS...EEHHHHHHHHHHHHHHHHHCT-SEEEE-S--TTHHHHHHHHHHHTT-TT-EEB---EEB--C CS
        ALAD  99 iraikeevpelvvitDvclceytshGhcgileeke..vdndetlellakvavsqaeaGadivapSdmmDgrvaaireaLdeagfeevailsYsaKyaSa 195
                 ++aik+++pel+vitD++l++yt+hGh+g+ +e+   vdnd+t+e+l+k+av+  + Gad+vapSdmmDgrv++ir+aLd++g++++ il+YsaKyaSa
  CCG91548.1 108 VSAIKKNIPELLVITDIALDPYTTHGHDGLWNEHLgdVDNDATVEILTKMAVMLGKMGADFVAPSDMMDGRVGQIRKALDSEGLTKTGILAYSAKYASA 206
                 *******************************765466************************************************************** PP

                 GGHHHHHHHT---S.S...--TTTSB-TT-HHHHHHHHHHHHHTT-SBEEEES-TTGHHHHHHHHTT-SS-EEEEE-HHHHHHHHHHHHTTSS-HHHHH CS
        ALAD 196 fYgPFrdaaesapsfg...drktYqmdpansrealreveldleeGADivmvKPalaylDiirevkeefdlpvaayqvSGEYamikaaaengwldekkvv 291
                 fYgPFr+a++sa++ g   d+ tYq++p+n+rea+ e+ ld +eGADi+mvKPa +ylDii ++++++ lpvaayqvSGEY+ i aa  ngwld kk++
  CCG91548.1 207 FYGPFREAVGSAKKRGyylDKMTYQLNPSNRREACLEALLDEKEGADILMVKPAGPYLDIIYQIRQNTLLPVAAYQVSGEYSAIVAAGLNGWLDPKKAA 305
                 ************9877777******************************************************************************** PP

                 HHHHHHHHHTT-SEEEETTHHHHHH CS
        ALAD 292 lEsllsikRAGadliltYfakevak 316
                 +Esl++ikRAGad+iltYfa+++ak
  CCG91548.1 306 IESLIAIKRAGADMILTYFAQSLAK 330
                 *********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2356.43
//
Query:       CCG91549.1  [L=217]
Description: Uracil phosphoribosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-55  187.2   0.0    2.8e-55  187.0   0.0    1.0  1  UPRTase       Uracil phosphoribosyltransferase
    5.7e-11   42.2   0.0    8.6e-11   41.6   0.0    1.2  1  Pribosyltran  Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.0   0.0   3.1e-59   2.8e-55       2     206 ..       6     205 ..       5     206 .. 0.96

  Alignments for each domain:
  == domain 1  score: 187.0 bits;  conditional E-value: 3.1e-59
     UPRTase   2 sshpllkakltilRdastsrkdfrelvdriarllaeealsallpveevtvttplgkeysgelldeekialVpilRaGegmeealrellpearvghlglq 100
                 ++hpll   lt lRd++t+++ f  ++d+++ +la+ a+++ l++e+++++tpl+k+ +  ++ + +i+l pilRaG+gm++++++l+pe +v+ lg  
  CCG91549.1   6 IEHPLLIDRLTRLRDRKTPKSLFGLYMDQVSSILATFATKS-LSLEPTEIETPLEKTST-FIFGQ-EIILTPILRAGLGMLKSFQSLIPESQVFFLGAV 101
                 68**************************************8.************98764.45554.8******************************** PP

     UPRTase 101 reeetlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeefpkvkvvtaavDeeldekgyivpGlGD 199
                 r+e+tle+ +y   +P+   ++++++lDp+iaTG+++++ i+ Lk+  +g  +I+v++ +as+eg+kr++++f +v++++++vD+e++ +g+i+pGlGD
  CCG91549.1 102 RNEKTLESTLYHGPIPSIKPHHHIFILDPMIATGHTMIKTIKFLKD--CGAISIRVVCCIASPEGIKRIQQTFDDVEIIAGCVDREINPSGFILPGLGD 198
                 *****************99***************************..7779*********************************************** PP

     UPRTase 200 fGDRlFg 206
                 +GDRlFg
  CCG91549.1 199 AGDRLFG 205
                 ******8 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   9.6e-15   8.6e-11      26     140 ..      65     175 ..      53     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 9.6e-15
                   --GGGEEEEEEETTTHHHHHHHHHHS.TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEEEE CS
  Pribosyltran  26 yngkpdvvvgiargGvpfakiladeL.evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpeevria 121
                   ++g++ ++ +i+r G+ + k   + + e +++++ +v+ ++   ++   g       ++++ +++++i D +++tG+T+++++++Lk++g+ ++r++
    CCG91549.1  65 IFGQEIILTPILRAGLGMLKSFQSLIpESQVFFLGAVRNEKTLESTLYHGP-----IPSIKPHHHIFILDPMIATGHTMIKTIKFLKDCGAISIRVV 156
                   678888899999999999999888887667777777777777777777666.....789999*********************************** PP

                   EEEE-HHHHHHHHHH-TTS CS
  Pribosyltran 122 vlvdkpateeevdknakrv 140
                   + ++ p++ ++ +  ++ v
    CCG91549.1 157 CCIASPEGIKRIQQTFDDV 175
                   ********99999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1660.53
//
Query:       CCG91550.1  [L=72]
Description: hypothetical protein MFUM_130014 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       117  (0.00652574); expected 358.6 (0.02)
Passed bias filter:                      104  (0.00580066); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 606.92
//
Query:       CCG91551.1  [L=142]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1119.22
//
Query:       CCG91552.1  [L=339]
Description: SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-15   56.4   0.0      4e-15   55.7   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
    1.9e-12   47.3   0.0    2.6e-12   46.9   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      2e-12   46.9   0.7    4.5e-12   45.8   0.7    1.6  1  Dimerisation2    Dimerisation domain
      5e-12   45.9   0.0    7.4e-12   45.3   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    1.1e-11   45.2   0.0    2.1e-11   44.4   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    1.4e-09   38.4   0.0    2.5e-09   37.7   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    1.3e-08   34.5   0.0    4.4e-08   32.7   0.0    1.8  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    1.3e-05   24.9   0.0    1.9e-05   24.3   0.0    1.2  1  MTS              Methyltransferase small domain
    0.00023   21.8   0.0    0.00042   21.0   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    0.00033   20.2   0.0    0.00049   19.6   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00056   19.9   0.1     0.0015   18.5   0.1    1.7  1  Dimerisation     Dimerisation domain
     0.0036   17.2   0.0      0.013   15.4   0.0    1.8  2  Methyltransf_18  Methyltransferase domain
     0.0069   16.1   0.0      0.011   15.5   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
  ------ inclusion threshold ------
      0.014   15.4   0.0       0.02   14.9   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
      0.055   14.5   0.0       0.12   13.4   0.0    1.6  1  Methyltransf_24  Methyltransferase domain
       0.12   11.7   0.0        0.4   10.0   0.0    1.8  2  GidB             rRNA small subunit methyltransferase G
       0.12   12.5   0.0          1    9.5   0.0    2.2  2  HTH_20           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   3.8e-18     4e-15      53     209 ..     159     319 ..     129     320 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 3.8e-18
                     HHHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS.-----TTEEEEES-TTTS---..--SEEEEESSGGGS-HHH CS
  Methyltransf_2  53 kvleafdleglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehl.sageeervefvgGdffkdslP..eaDaillkrvlhDwsdek 144
                      ++ + + +++ +++D+G G+ +   ai+ a  + kv+  D+p+V +  + ++   g e+r ef +G++ + + P  +  ++++ ++lh   + k
      CCG91552.1 159 AIIGEANSSHMLEVLDIGCGSAVWSLAIALANKQTKVTAVDFPRVLAYTQAYVqRHGMEDRYEFLAGNIEEIEYPqkNFNLVIFGHILHSEGEIK 253
                     45556667788899**************************************98899******************544579************** PP

                     HHHHHHHHHHH--TT-EEEEEE----TTS---HHHHHHHHHHHHC.SS-----HHHHHHHHHHCT- CS
  Methyltransf_2 145 cvklLkrvkkalpagGkvivveavlgadpsgeletelvdlimlvq.teGkeRteaeyeellseaGf 209
                      ++lLk++ k + ++G++ + e + + ++++++e+ l  l mlv+ +eG   +++eyee l e Gf
      CCG91552.1 254 SRRLLKKIAKIMDTDGRIAILEFLPNRQRTEPVEAVLFGLRMLVNtKEGGIYSAEEYEEWLREVGF 319
                     ********************************************989******************9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   2.5e-15   2.6e-12      24     162 ..     159     321 ..     130     324 .. 0.75

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 2.5e-15
  Methyltransf_23  24 g...........rvLdiGcGtGillevl..rengfsvtgvDlspeaveiaekakkaqkdqfdeq........eaaepqgkfdlIvlrevlehvp 96 
                      +           +vLdiGcG+  ++  +  + ++++vt+vD  +++     +a+ +++ ++d+         e+++pq+ f+l++  + l++  
       CCG91552.1 159 AiigeansshmlEVLDIGCGSAVWSLAIalANKQTKVTAVDFPRVLAYT--QAYVQRHGMEDRYeflagnieEIEYPQKNFNLVIFGHILHSEG 250
                      1555555566679*********9999994455677*******7654443..3444444444333666666668888****************99 PP

  Methyltransf_23  97 ..dppellrqiatllkpgGylllseplaslkedrllld....wlylvpagrhisffsarslkelleeaGlev 162
                           +ll++ia+++  +G++ ++e+l + ++++ ++      ++lv+  + +  +sa++++e+l+e G++ 
       CCG91552.1 251 eiKSRRLLKKIAKIMDTDGRIAILEFLPNRQRTEPVEAvlfgLRMLVNT-KEGGIYSAEEYEEWLREVGFTK 321
                      55589*********************99999999999944444555655.66689***************85 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.7   4.3e-15   4.5e-12       8      89 ..      21      96 ..      14      97 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 4.3e-15
  Dimerisation2  8 GFlaSkaLftAceLgvFdlLkeeeplsaeevaeelgasvkGterLldacvaLgLLerekkeekkalYsntelastyLvsssp 89
                     +a  +L tA +L++F +L++ +++s++e+a+  gas++G++ +ld ++aL+LLe++     k+ Y+ ++l+++ Lv++s+
     CCG91552.1 21 DTRANHILKTAFQLHIFKILNS-HKMSLSEIANITGASLRGLSFFLDGLTALDLLEKD-----KESYQLSSLSKELLVEESQ 96
                   557788999*************.*********************************55.....358*************997 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0     7e-15   7.4e-12       5     113 ..     170     277 ..     166     318 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 7e-15
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevl..naladpdkile 95 
                      l+vlD+GCG+   ++++a +++++ +v+ +D+ ++++ + ++  q++g + ++eF +g+iee+e  + +++f+l++   +l       +   l+
       CCG91552.1 170 LEVLDIGCGSAVWSLAIA-LANKQTKVTAVDF-PRVLAYTQAYVQRHGMEdRYEFLAGNIEEIE--YPQKNFNLVIFGHILhsEGEIKSRRLLK 259
                      78****************.************9.899**************9*************..************9996666667888999 PP

  Methyltransf_31  96 eiervlkpggilliedpr 113
                      +i + + ++g+++i ++ 
       CCG91552.1 260 KIAKIMDTDGRIAILEFL 277
                      ***********9998765 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   1.9e-14   2.1e-11       1      97 []     172     269 ..     172     269 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 1.9e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEEST.GGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssga.lhhlsdedlekalkeiar 91 
                      vLd+GcG+  ++la+a + ++ kvt+vD+ ++ l+++++ ++++g+  + ef+ g++e+++++++ f+lv+  g+ lh   + + +++lk+ia+
       CCG91552.1 172 VLDIGCGSAVWSLAIALANKQTKVTAVDF-PRVLAYTQAYVQRHGMedRYEFLAGNIEEIEYPQKNFNLVIF-GHiLHSEGEIKSRRLLKKIAK 263
                      9************99988669*******9.8999*********9999*************************.78688877778899******9 PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      ++  +G
       CCG91552.1 264 IMDTDG 269
                      998877 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   2.3e-12   2.5e-09       1      96 []     173     273 ..     173     273 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 2.3e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvL 88 
                      Ld+GcG+   + a+a +   ++v++vD  +++l++ ++ +++ g+  + ef+ +++e++ ++ + f lv+  + lh     + +++lk+ia+++
       CCG91552.1 173 LDIGCGSAVWSLAIALANkqTKVTAVD-FPRVLAYTQAYVQRHGMedRYEFLAGNIEEIEYPQKNFNLVIFGHILHSEgeIKSRRLLKKIAKIM 265
                      8*******9999999444469******.799998888888888889999*****************************98789*********** PP

                      EEEEEEEE CS
  Methyltransf_11  89 kpgGllvi 96 
                        +G+++i
       CCG91552.1 266 DTDGRIAI 273
                      ****9975 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   4.2e-11   4.4e-08      45     154 ..     166     276 ..     146     314 .. 0.87
   2 ?   -1.1   0.0      0.93   9.8e+02     201     221 ..     307     327 ..     293     330 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 4.2e-11
                      S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HH..HH CS
  Ubie_methyltran  45 vkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLpfeddsfDvvtvsfGlrnvtDkl..ka 135
                      + +  +vlD+ +G++ ++++++  ++++ kv+ +D+ + +L  +++ ++++g+  + efl +n ee+++ ++ f++v  ++ l    +++  + 
       CCG91552.1 166 SSHMLEVLDIGCGSAVWSLAIA-LANKQTKVTAVDF-PRVLAYTQAYVQRHGMEdRYEFLAGNIEEIEYPQKNFNLVIFGHILHSEGEIKsrRL 257
                      4445599************997.678999*******.5799***********9989***************************99887652278 PP

                      HHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 136 LkeayrvlkpGGrlvvlef 154
                      Lk++ +++   Gr+ +lef
       CCG91552.1 258 LKKIAKIMDTDGRIAILEF 276
                      ******************9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.93
                      HHHHHHHHHHTTEEEEEEEEE CS
  Ubie_methyltran 201 qetlkeliedaGfksveyesl 221
                      +e+++e +++ Gf++ +y+++
       CCG91552.1 307 AEEYEEWLREVGFTKFTYHDI 327
                      6889999**********9986 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.8e-08   1.9e-05      30     138 ..     167     274 ..     152     301 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.8e-08
                 CTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTT.TSTTS-EEEEEE---STTTCHCHHHHHHHHHHHH CS
         MTS  30 elsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvle.eveekkfdlivsNPPfhagkatelavaeeliaeA 125
                 ++  +vlD+GcG  v ++a+a ++++++vt+vd   r l+ +++ ++++++e   e++a ++ e e ++k+f+l++    +h++ +      ++l+++ 
  CCG91552.1 167 SHMLEVLDIGCGSAVWSLAIALANKQTKVTAVDFP-RVLAYTQAYVQRHGMEdrYEFLAGNIEEiEYPQKNFNLVIFGHILHSEGE---IKSRRLLKKI 261
                 45668****************************85.78**************99*******987466789******9999999888...4467899999 PP

                 HHHEEEEEEEEEE CS
         MTS 126 keaLkegGeLliV 138
                 +++++++G++ i 
  CCG91552.1 262 AKIMDTDGRIAIL 274
                 9999999998775 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     4e-07   0.00042       1      99 []     173     271 ..     173     271 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhlkdir..evldnirk 91 
                      L+iGcG++  + a++ +++++++t+vD+ +     +++  ++++    +++e+ a ++++ + + + f lv+  + lh   +i+  ++l++i+k
       CCG91552.1 173 LDIGCGSAVWSLAIALANKQTKVTAVDFPRVLA-YTQAYVQRHG--MEDRYEFLAGNIEEIEYPqKNFNLVIFGHILHSEGEIKsrRLLKKIAK 263
                      8**************************966665.4444444444..34566666666554443357**************6655459******* PP

  Methyltransf_12  92 lLkpgGrl 99 
                       +  +Gr+
       CCG91552.1 264 IMDTDGRI 271
                      *9999985 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.7e-07   0.00049     163     236 ..     170     247 ..     156     286 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.7e-07
        PrmA 163 eevlDvGtGSGiLaiaaakLgak.kvvavDiDevAvkvakeNaelNkveaklevalseellk....eekadviv.aNILa 236
                  evlD+G+GS++ ++a a+ + + kv+avD   v +  +++ +++ ++e++ e  l++++ +    ++++++++   IL 
  CCG91552.1 170 LEVLDIGCGSAVWSLAIALANKQtKVTAVDFPRV-LAYTQAYVQRHGMEDRYEF-LAGNIEEieypQKNFNLVIfGHILH 247
                 48*************9998876438999**9654.7788888888888888875.4444443334446676554155654 PP

>> Dimerisation  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.4e-06    0.0015       2      30 ..      27      52 ..      26      55 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.4e-06
  Dimerisation  2 vLKaAiELglldiiakaggkplspsEias 30
                  +LK+A++L ++ i+ ++    +s+sEia+
    CCG91552.1 27 ILKTAFQLHIFKILNSHK---MSLSEIAN 52
                  6****************8...******97 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.3   2.4e+03      95     141 ..      69     120 ..      65     123 .. 0.56
   2 !   15.4   0.0   1.2e-05     0.013      17      79 ..     171     231 ..     158     244 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.3
  Methyltransf_18  95 lileILeeakeklk..kikk..lilqpnsea.eelRkylvengfkiedEelv 141
                      + l++Le++ke+ +  +++k  l+ +++  + + l++   ++++ki  E+++
       CCG91552.1  69 TALDLLEKDKESYQlsSLSKelLVEESQDYIgDFLQDSFLNEDWKILTEAVL 120
                      5666777775544422222232444445444244677788888888888876 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.2e-05
  Methyltransf_18  17 rvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklk 79 
                       v+DiG+  ++ +++++  +k +kv+a+D  +  l+  ++ ++++g+ed+ e+  ++ +e+++
       CCG91552.1 171 EVLDIGCGSAVWSLAIALANKQTKVTAVDF-PRVLAYTQAYVQRHGMEDRYEFLAGN-IEEIE 231
                      799**************************9.57899****************98887.45554 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     1e-05     0.011      41     152 ..     163     270 ..     144     285 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1e-05
  Methyltransf_16  41 ganelsklsvlELGsGtGlvGlavaellpeakviltDleellellkknielnknalkskvkvevLdWgeeleedllekeevDlilaaDcvYled 134
                      +an+++ l+vl++G G+ +  la+a++ +++kv+  D + +l   +  ++   + ++++ ++ +     ++ee    +++++l++   ++  e 
       CCG91552.1 163 EANSSHMLEVLDIGCGSAVWSLAIALANKQTKVTAVDFPRVLAYTQAYVQR--HGMEDRYEFLAG----NIEEIEYPQKNFNLVIFGHILHSEG 250
                      46788999**************************************99999..668776555443....3444445667788888888888877 PP

  Methyltransf_16 135 sle..lLvkvLkellkkesk 152
                       ++   L+k + +++++++ 
       CCG91552.1 251 EIKsrRLLKKIAKIMDTDGR 270
                      66522577777777777766 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.9e-05      0.02      16      96 ..     160     234 ..     143     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.9e-05
  Methyltransf_32  16 llkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeatssk 96 
                      ++ e a++s+ l+v+D+G+G +  s ++al  +++++kv+++d  + l + +++  ++ g  +++r +f  ++iee++ ++
       CCG91552.1 160 IIGE-ANSSHMLEVLDIGCGSAVWSLAIAL--ANKQTKVTAVDFPRVL-AYTQAYVQRHG--MEDRYEFLAGNIEEIEYPQ 234
                      3334.5778899***********9999999..3368*******97655.56778888888..8999999999999987655 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   0.00012      0.12       2      61 ..     174     230 ..     173     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00012
  Methyltransf_24   2 EiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalareaglddrvrlikadseea 61 
                       iG  +G s++w l+ + +n++++++avd  +  + ++a+++++g++dr +++ ++ ee 
       CCG91552.1 174 DIG--CG-SAVWSLAIALANKQTKVTAVDFPRVLAYTQAYVQRHGMEDRYEFLAGNIEEI 230
                      578..66.4777777778888889******99888899***************9999884 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.1   1.2e+03     131     171 ..      51      89 ..      45      97 .. 0.72
   2 ?   10.0   0.0   0.00038       0.4      51     120 ..     171     241 ..     153     276 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
                 HHHHCCCEEEEEEEEEEESS--HHHHHCCHCCCCCCCEEEE CS
        GidB 131 teillkllkegglilalKGksaedeleekekalqlskvevl 171
                 ++i+    + +gl ++l G +a+d le++++++qls++ ++
  CCG91552.1  51 ANITGA--SLRGLSFFLDGLTALDLLEKDKESYQLSSLSKE 89 
                 555554..456888899999999999999999999887765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00038
                 .EEEETSTTTTTHHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT-.SSEEEEES-CCC.TTTTT-EEEEE CS
        GidB  51 kviDvGsGaGlPGipLaiarpelkltLleslekkiaFLeevkeelkl.enveivearaee.kqeeekydvvt 120
                 +v+D+G G  + ++ +a+a+++ k+t ++   +  a+ +  +++ ++ + +e++  ++ee   +++++++v+
  CCG91552.1 171 EVLDIGCGSAVWSLAIALANKQTKVTAVDFP-RVLAYTQAYVQRHGMeDRYEFLAGNIEEiEYPQKNFNLVI 241
                 59************************99964.5566665555555441457778877777555556666665 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00095         1      12      60 ..      33      80 ..      24      81 .. 0.92
   2 ?    0.2   0.0      0.74   7.9e+02       2      27 ..     260     284 ..     259     295 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00095
                HHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
      HTH_20 12 RrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvreg 60
                ++ i++ L     +++se+a   + s   ls+ L+ L   +L+e  +e+
  CCG91552.1 33 QLHIFKIL-NSHKMSLSEIANITGASLRGLSFFLDGLTALDLLEKDKES 80
                78899999.9999*******************************99987 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.74
                 HHHHHHS-HHHHHHHHHHSTCTTB-H CS
      HTH_20   2 qiaeALahPvRrrilraLaraeglta 27 
                 +ia++++   R +il  L +++ +t 
  CCG91552.1 260 KIAKIMDTDGRIAILEFL-PNRQRTE 284
                 5899999999********.6666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2543.59
//
Query:       CCG91553.1  [L=475]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3500.18
//
Query:       CCG91554.1  [L=477]
Description: Glycosyl hydrolase, family 57 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3213.77
//
Query:       CCG91555.1  [L=225]
Description: Periplasmic protein TonB [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-12   45.6   0.0    1.2e-11   44.9   0.0    1.3  1  TonB_C    Gram-negative bacterial TonB protein C-terminal
    0.00027   21.1   0.5      0.001   19.3   0.0    2.3  2  TonB_2    TonB C terminal


Domain annotation for each model (and alignments):
>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   1.3e-15   1.2e-11       2      63 ..     135     196 ..     134     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.3e-15
                 -----HHHHHHTEEEEEEEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT.-EE-TT--E CS
      TonB_C   2 epeYPeeArrrgieGtvtveftidpdGnvtnvkvvkssgseiLdkaAleavrk.wkfkpapkn 63 
                 +p YP eAr r++eGtv++ ++++ +G++ n ++v+ssg+++Ldk A + + + wkf+  +  
  CCG91555.1 135 PPPYPYEARLRHMEGTVVIMLDVR-KGKIVNSQIVRSSGYPLLDKTAKDWIDShWKFPLHVSR 196
                 689********************6.7*******************************998776 PP

>> TonB_2  TonB C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.61   5.4e+03      43      57 ..      41      55 ..      39      72 .. 0.76
   2 !   19.3   0.0   1.2e-07     0.001      24      69 ..     145     191 ..     121     206 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.61
      TonB_2 43 vrlvksSgneafDka 57
                 +++ksS  ++ D++
  CCG91555.1 41 SEIEKSSCFSQTDSS 55
                578899988888875 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.2e-07
      TonB_2  24 gnleavveitidp.dGeivsvrlvksSgneafDkavkrAiekasplP 69 
                 + +e +v i++d  +G+iv+ ++v+sSg + +Dk++k  i+   ++P
  CCG91555.1 145 RHMEGTVVIMLDVrKGKIVNSQIVRSSGYPLLDKTAKDWIDSHWKFP 191
                 567888999998559*************************9998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1655.67
//
Query:       CCG91556.1  [L=192]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.052   12.9   0.3      0.092   12.1   0.3    1.3  1  UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit T


Domain annotation for each model (and alignments):
>> UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   5.1e-06     0.092      18      35 ..     107     124 ..     105     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.1e-06
  UCR_Fe-S_N  18 ATgavgaVGaaaaawPfi 35 
                 A ++  aVGa+  +wP+i
  CCG91556.1 107 ASSSGMAVGAGIIFWPLI 124
                 6666679**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1247.96
//
Query:       CCG91557.1  [L=167]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1212.49
//
Query:       CCG91558.1  [L=280]
Description: (2R)-phospho-3-sulfolactate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-87  293.1   0.0    1.7e-87  292.9   0.0    1.0  1  ComA      (2R)-phospho-3-sulfolactate synthase (ComA)


Domain annotation for each model (and alignments):
>> ComA  (2R)-phospho-3-sulfolactate synthase (ComA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.9   0.0   9.6e-92   1.7e-87       1     242 [.      18     266 ..      18     267 .. 0.97

  Alignments for each domain:
  == domain 1  score: 292.9 bits;  conditional E-value: 9.6e-92
                 XXXX-SS-SSS-EEEEESS.....--HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT..-HHHHHHHHH CS
        ComA   1 eereekPrktGlTeviDkG.....lglreledlletageyiDglKlgggtsallpeeilrekielahehgvyvstGgtlfEaalaqg..kvdeyleeck 92 
                 +ere+kPrk GlTe+  +G     +g ++ledl++t+g+yiD+lK++gg+++l+p+++l+++i+l+h+h+v vstGg ++E++l+ g   +d+yl+eck
  CCG91558.1  18 NEREQKPRKIGLTEI--RGpyytpVGRHYLEDLFDTMGNYIDILKFAGGSFTLMPKRALKDIINLCHSHNVLVSTGG-FIERVLTMGseLIDKYLNECK 113
                 689************..************************************************************.*********989********* PP

                 HCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSH........HHHTT..--CCHHHHHHHHHHHHTECEEEE--TTT--SSTTB-TTS- CS
        ComA  93 elgfdviEvsdgtlelpeeeklrliekakkeglkvlpevgkkdg........elese..sdveklieeakrdleaGaekviiEaresGitegvydekge 181
                 ++gfd++Evs+g++++p ++ lrl+ek++k glk++pevg+++g        ele+e  +++++ i++ak++leaGa+ +++E++  Gite+v      
  CCG91558.1 114 SIGFDIVEVSAGFVTVPFDDLLRLVEKVQKMGLKAKPEVGVQFGaggatkaeELEAEgtKSTKWAIKQAKSFLEAGAYLIMVESE--GITENV----AV 206
                 ***********************************************9998844444669*************************..******....** PP

                 B-HHHHHHHHTTS-GGGEEEE--SHHHHHHHHHHH-TT--EEEEEGGGHHHHHHHHCT-SG CS
        ComA 182 vrtdvvekiierlgleklifEApekkqqewfikefGpnVnLgnvdpsevlaLealRlglrg 242
                 ++ ++++++i++lgle+l+fEA+++++++w+ik +Gp+VnL +vd+s++++Le+lR+g++g
  CCG91558.1 207 WKREIIAEFIDQLGLETLMFEAADPEVFSWYIKDYGPEVNL-FVDHSQIVQLECLRSGIWG 266
                 *****************************************.******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2102.94
//
Query:       CCG91559.1  [L=307]
Description: RuBisCO operon transcriptional regulator CbbR [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-32  111.9   0.0    3.6e-32  111.4   0.0    1.2  1  LysR_substrate  LysR substrate binding domain
    5.9e-21   74.2   0.1    3.5e-20   71.7   0.1    2.1  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.026   14.4   0.0    1.6  1  MarR_2          MarR family
      0.069   12.7   0.3       0.22   11.1   0.0    2.0  2  HTH_24          Winged helix-turn-helix DNA-binding
      0.082   12.8   0.0        0.3   11.1   0.0    1.9  1  MarR            MarR family
      0.086   12.7   0.0       0.24   11.2   0.0    1.7  1  HTH_IclR        IclR helix-turn-helix domain
      0.091   12.6   0.0        0.2   11.4   0.0    1.6  1  HTH_30          PucR C-terminal helix-turn-helix domain
       0.13   12.2   0.0       0.26   11.2   0.0    1.5  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.0   1.6e-35   3.6e-32       7     206 ..      96     296 ..      90     298 .. 0.96

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 1.6e-35
                     EEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGG CS
  LysR_substrate   7 rLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLargepvsled 100
                     ++ +++++  ++y++p+l ++f++ +P+  +++  +ds+  ++l+++ ++D+a+   p+ + +gl   +L++++++ ++s  hpL r++ +s  +
      CCG91559.1  96 KIVFSTSSLSCQYFIPQLYREFQESFPDCLFSIIPADSPLAIELVEQKKVDFALSIKPIvPFDGLAMLELFQDEILFLVSSFHPLTRKKDISKKE 190
                     56778899999************************************************************************************ PP

                     GCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCCHH CS
  LysR_substrate 101 LadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrelsp 195
                     ++    +  +++ ++   +e+a++e+ l p+  +e+ ++ +++++v+ GlGi++lp ++v++el+ g+l  l l + p+ r +++vyr gr ls 
      CCG91559.1 191 IETAHYLIKNKNDTTFHIVERAFAEQSLYPKNFIELAETGSIKEMVKMGLGIGILPGWIVKEELKKGKLLSLSLIARPIIRKWVFVYRMGRKLSL 285
                     ***88888799999**************************************************************8888*************** PP

                     HHHHHHHHHHH CS
  LysR_substrate 196 avrafidflre 206
                     +  +f++++++
      CCG91559.1 286 LETTFLELCKQ 296
                     *******9986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.1   1.6e-23   3.5e-20       2      60 .]       8      66 ..       7      66 .. 0.97
   2 ?   -0.0   0.0      0.39   8.7e+02       7      17 ..     223     233 ..     221     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 1.6e-23
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                r+l +fv  ae++sf++AA+ L+lsqpavsr i++LEeelg++Lf+R g++ +LT+ G+
  CCG91559.1  8 RALYIFVNTAESESFSQAAKSLHLSQPAVSRTIQSLEEELGCRLFDREGKNPSLTAIGR 66
                6899****************************************************996 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.39
                 HHHHHHHSSHH CS
       HTH_1   7 fvavaeegsft 17 
                 f+++ae+gs+ 
  CCG91559.1 223 FIELAETGSIK 233
                 999******96 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.2e-05     0.026      23      47 ..      21      45 ..       4      46 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
                EHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsrilkrLva 47
                + ++ a+ l+ls++avsr+++ L++
  CCG91559.1 21 SFSQAAKSLHLSQPAVSRTIQSLEE 45
                889*******************997 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.8e-05      0.22      20      44 ..      22      46 ..      17      46 .. 0.91
   2 ?   -2.3   0.0       1.5   3.4e+03      38      46 ..     232     240 ..     231     240 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.8e-05
      HTH_24 20 qreLAerlglSpstvnrrlkrLeee 44
                 ++ A+ l+lS+++v+r ++ Leee
  CCG91559.1 22 FSQAAKSLHLSQPAVSRTIQSLEEE 46
                66779******************96 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.5
      HTH_24  38 lkrLeeeGl 46 
                 +k+++++Gl
  CCG91559.1 232 IKEMVKMGL 240
                 89*****97 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00013       0.3      21      43 ..      23      45 ..      15      46 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                HHHHHHHTS-HHHHHHHHHHHHH CS
        MarR 21 seLakklgvskstvtrvldrLek 43
                s+ ak l++s+++v+r++  Le+
  CCG91559.1 23 SQAAKSLHLSQPAVSRTIQSLEE 45
                56699*****************8 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.24      15      45 ..      17      46 ..      10      46 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
                TBSS-BHHHHHHHHTS-HHHHHHHHHHHHHT CS
    HTH_IclR 15 apqeltlselArrtglpkStvhRlLqtLvel 45
                a  e ++s+ A+ ++l+ ++v+R +q+L+e+
  CCG91559.1 17 AESE-SFSQAAKSLHLSQPAVSRTIQSLEEE 46
                4444.99*********************995 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.1e-05       0.2      12      48 ..      19      55 ..       9      57 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.1e-05
                TT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHH CS
      HTH_30 12 ggnisatAkaLhvHrnTlryRLrrieellgldlddpd 48
                + + s++Ak+Lh++   ++  ++ +ee lg+ l d +
  CCG91559.1 19 SESFSQAAKSLHLSQPAVSRTIQSLEEELGCRLFDRE 55
                57889**************************998765 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.26      18      42 .]      20      44 ..      15      44 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
  HTH_AsnC-type 18 isyaeLAervGlSestvlrRvrrLe 42
                    s+++ A+ ++lS+++v r ++ Le
     CCG91559.1 20 ESFSQAAKSLHLSQPAVSRTIQSLE 44
                   699999****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1861.37
//
Query:       CCG91560.1  [L=360]
Description: Nitrate ABC transporter, nitrate-binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-63  212.4   0.0    1.1e-62  212.0   0.0    1.1  1  NMT1_2    NMT1-like family
  ------ inclusion threshold ------
      0.092   12.7   0.0          3    7.7   0.0    2.2  2  NMT1      NMT1/THI5 like
      0.098   12.7   0.1       0.17   12.0   0.1    1.3  1  DUF1803   Domain of unknown function (DUF1803)


Domain annotation for each model (and alignments):
>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.0   0.0   1.8e-66   1.1e-62       7     252 ..      18     262 ..      16     263 .. 0.97

  Alignments for each domain:
  == domain 1  score: 212.0 bits;  conditional E-value: 1.8e-66
      NMT1_2   7 qlklGfialtdaaplvvakekglfakeGltvelekqaswaelrdkllagelDaahvltpapllidlGiggakadmkvlaslnlnGqaitlsnklkdkkv 105
                 ++++G+i+l+d+aplvva e+glf+k G +v+l+ + +wa++r k++ +elD a+++ ++pl ++ G+++ +    +++ lnlnG+aitls+k+ +   
  CCG91560.1  18 KITVGYIPLIDCAPLVVALEMGLFKKWGFDVQLSPEPGWATIRGKIVYEELDFAQAVCGLPLVLNYGLKSIPCRCSTAFVLNLNGNAITLSKKYSSILE 116
                 79******************************************************************9999********************9888655 PP

      NMT1_2 106 .sdakalkdlvakkkaskplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvtaltsqelwk 203
                  ++ +++ +++++++   pl ++v +  s h +llr+wL++ Gl+p++d++ v +pppqm+ +lk+g idgfcvgePwn++ ++e+ G+ ++ts +l +
  CCG91560.1 117 nESLENYGRILKATSG-LPLLFGVASTFSSHYFLLRRWLQKIGLNPQKDIRFVPLPPPQMPIHLKEGFIDGFCVGEPWNSVSLFEKTGYCVATSLDLAP 214
                 7999999999999999.********************************************************************************** PP

      NMT1_2 204 dhPekvlgvredfveknpntaralvkalleAtkwldakkenraeaakll 252
                  hPekvl +++++ e++++ ++++v  l+eA++w d ++ nr+++a++l
  CCG91560.1 215 RHPEKVLLANAKYKERKREEHIRIVGCLIEACQWAD-SPLNRQALAEML 262
                 ************************************.*********997 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0005         3       4      35 ..      29      60 ..      27     107 .. 0.85
   2 ?    2.8   0.0     0.017        99     105     205 ..     147     245 ..     138     251 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0005
                GHHHHHHHHTTHHHHTTEEEEEE--SSTTHHH CS
        NMT1  4 haglyvAkekGYFkeeGldVeivepadpsdat 35
                 a+l+vA e G Fk+ G dV++ ++ + ++  
  CCG91560.1 29 CAPLVVALEMGLFKKWGFDVQLSPEPGWATIR 60
                689*******************9987766555 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.017
                 HHHHHHHHHHTT--G.GG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT--.---SEEEEEEHHHHHH-HHHHHHHHHH CS
        NMT1 105 kallkallakdggdp.sdvtlvnvggtslakalltgkvDaaiggyenwegvelesegkelrifaladlgvp.dyyslvlitnekllkenpelvkkFlrA 201
                   ll++ l+k g++p +d+ +v+    ++  +l +g +D    + e w+ v+l ++   + +  ++ l+ + +  + vl +n k+ + ++e   +++  
  CCG91560.1 147 YFLLRRWLQKIGLNPqKDIRFVPLPPPQMPIHLKEGFIDGFC-VGEPWNSVSLFEK---TGYCVATSLDLApRHPEKVLLANAKYKERKREEHIRIVGC 241
                 568899999999976378******9999888********887.9999999998555...4444444444443999*********999998876666655 PP

                 HHHH CS
        NMT1 202 lkkG 205
                 l ++
  CCG91560.1 242 LIEA 245
                 5555 PP

>> DUF1803  Domain of unknown function (DUF1803)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.8e-05      0.17      41      81 ..     311     350 ..     301     356 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.8e-05
     DUF1803  41 kldrlldelidaglikRenkrYklnlpifeieeaaelilee 81 
                 k +  ++e++dagl+kRe+++ +  ++  ei ++ae i+++
  CCG91560.1 311 KEQWIVNEMVDAGLLKREERKNRSFFDT-EIYKQAEKIVAQ 350
                 5555789****************99998.776666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2549.88
//
Query:       CCG91561.1  [L=716]
Description: Assimilatory nitrate reductase large subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-69  233.8   0.0    4.6e-69  233.5   0.0    1.1  1  Molybdopterin    Molybdopterin oxidoreductase
    3.2e-26   91.5   0.0    6.3e-26   90.6   0.0    1.5  1  Molydop_binding  Molydopterin dinucleotide binding domain
    5.3e-06   26.3   0.1    1.1e-05   25.4   0.1    1.5  1  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain
     0.0031   17.2   0.0        1.1    9.0   0.0    2.4  2  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai
  ------ inclusion threshold ------
       0.17   11.7   0.0        3.3    7.6   0.0    2.3  2  eIF-1a           Translation initiation factor 1A / IF-1


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.5   0.0   1.3e-72   4.6e-69       1     432 []      66     495 ..      66     495 .. 0.94

  Alignments for each domain:
  == domain 1  score: 233.5 bits;  conditional E-value: 1.3e-72
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHHCHHCCCC CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppasaqqtigsds 96 
                    R+ +P++R   ++++ F+++ W+eA  +  +++ +++   g++++++++sg+l+ +e  ++l k+++   +  +s +d ++++++asa +++++ +
     CCG91561.1  66 RVLNPLIR--YKKDNAFRESNWEEAISFTVDKISQIRSRWGNSSIFVYGSGSLT-NEKAYLLGKFARVALQ--TSAIDYNGRYCMASASKALEMAL 156
                    899*****..6668****************************************.****************..9***************8888888 PP

                    CTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB-HCGGGCSEEEEEHTTTHHHHHHHHHHHHHHCCCCTCHHHH CS
  Molybdopterin  97 rsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpryaellkfadewlaikpgtdaalalamghvilqelkvdkeflr 192
                      +  +  p+  ++++dl +l+G+N+ e++p+  +++ + ++k+++k+i+i+pr + ++++ad +l ikpgtd+ la+++ + ++q++k d  f+r
     CCG91561.1 157 GIDRGLPFPIDYIAHTDLLLLVGTNPLETMPPIRSHFDC-LKKRNKKIIAIDPRPTPTATYADVHLQIKPGTDGILANGLLYLLIQKNKIDHYFVR 251
                    8889999**************************999999.44557*************************************************** PP

                    HHEECHHHCCCCCCCEECCSHHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHHHHHHHHCTHCSSTTCEEEEESSCTTHHHC CS
  Molybdopterin 193 kytygkeetdmpllvtleeetgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyravinLallvgnvgqpgGgwahlnGqlilaga 288
                    +yt+g+e+    ++   + +++  +++  r   ++a+ +  ++    i+ G g  ++++g  ++   inL l++g vg+  +g++ l+Gq + +g 
     CCG91561.1 252 NYTSGFEKILNSVSSFWPAKVETLTGISQRELFRVAELLGTEKN-IVILTGRGCEQQTQGVFNVLSFINLSLALGIVGKVNSGFGTLTGQGNGQG- 345
                    ************************************99999998.9999**********************************************. PP

                    HHHHTCCTTCCCCCCCTT......HHHHHCCCTTTCSTSS--ECGGCHHHHH.HTTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEESCSS CS
  Molybdopterin 289 aekvgalpvllsvkslke......ekikfaaeqpgnlgnfprnlfversnll.kssgkkvlyllgnnpevdhadenevekalekldlvvvldgrlt 377
                    a++ g +p +l+  +++           +++ ++ +l+  ++++++e  + l k +g+k++ + g np+v+ ++++++++ + +l+++ v+d +l+
     CCG91561.1 346 ARELGLKPDQLPGARSNLdsfdrnYIASLWQIDEKDLPS-SDKSVTEIFESLeKPQGIKAMLVFGANPIVSSPNNSKLKRLFPQLEFLLVCDPFLS 440
                    999999999999999999899865555556666666665.6666666666552679***********************9**************** PP

                    HHHHTSSEEEEBE-CCGSEEEEE-TTSEEEEEEESSS-STT-BEHHHHHHHHHHH CS
  Molybdopterin 378 stalyaDiiLPaatwyEkedlytndegrfqhlkqavsppgeaksdwkIlkaLakk 432
                    +ta +aD++LP+a w E+ +++tn egr+  + ++ +pp + k+d +I+  La+k
     CCG91561.1 441 ETAAMADVVLPTAIWAEETGTVTNLEGRVLLRPKILDPPKNVKTDLEIIHLLAEK 495
                    **************************************************99986 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   1.7e-29   6.3e-26       1     111 []     586     693 ..     586     693 .. 0.99

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 1.7e-29
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS.-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC.....S-GHCT CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpep.evveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwweagekggnaNal 93 
                      ++L+tgr+l++++++++tr +++l+++ep   veinp+ A++ GikdG+ V ve++rG+  ++ak ++++r +++f+pf  ++    +++aNal
       CCG91561.1 586 FYLTTGRTLHHYQTGVQTRLIQKLQEKEPsVIVEINPAVARHFGIKDGQYVLVETKRGKGYFKAKFSPNLRLDTLFIPFYSNA----QAEANAL 675
                      89*******************************************************************************99....******* PP

                      S--SCSTTT--CSTT-EE CS
  Molydop_binding  94 tddatdplsgtpefksva 111
                      t +++dpls++p+fk +a
       CCG91561.1 676 TISHFDPLSKMPSFKLCA 693
                      ***************996 PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1     3e-09   1.1e-05       3      50 ..      13      58 ..      11      63 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 3e-09
                    EEEEE-SSBTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHTCH CS
  Molybdop_Fe4S4  3 vvktaCpyCgvgCglevhvkdgkivkvegdpdhpvnegrlCvKGrtll 50
                    +++t Cp+C+ +C + v v+d  + +ve+ +   +n+g +C+KG +++
      CCG91561.1 13 KYPTHCPFCSYQCAIWV-VQDSHGFRVEPRE-FTTNKGEICIKGWHAA 58
                    789************87.5677777***976.999*********8776 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0003       1.1      74     118 ..     168     215 ..     149     227 .. 0.72
   2 !    5.7   0.0    0.0033        12       3      25 ..     285     307 ..     283     320 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0003
                   HHHH-SEEEEES-S....SSTCCCTT.TTT.TTTTT-EEEEEESSCCCCTT CS
  TPP_enzyme_M  74 aleeaDlvlalGar....fddirttg.sep.efapeakiihididpaeigk 118
                    ++++Dl+l++G++    +        +++   ++++kii id+ p+    
    CCG91561.1 168 YIAHTDLLLLVGTNpletMPP---IRsHFDcLKKRNKKIIAIDPRPTPTAT 215
                   6899********995333222...3346774444555*******9986655 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0033
                   HHHHHHHH-SSEEEEE-CHHCHT CS
  TPP_enzyme_M   3 kaaellkaakrpvilvGggvars 25 
                   ++aell + k++vil G g+ ++
    CCG91561.1 285 RVAELLGTEKNIVILTGRGCEQQ 307
                   79******************865 PP

>> eIF-1a  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.087   3.1e+02      48      62 ..      37      51 ..      26      53 .. 0.86
   2 ?    7.6   0.0   0.00092       3.3      22      52 ..     611     641 ..     605     646 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.087
                EEEE-TT-TTEEEEE CS
      eIF-1a 48 lVelspydltkGrIv 62
                 Ve++++  +kG+I+
  CCG91561.1 37 RVEPREFTTNKGEIC 51
                59*****99*****7 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00092
                 SSSSBEEEEE-HHHHCT----TT-EEEEEE- CS
      eIF-1a  22 dngkevlaeipgkfRnkiwikrGdyVlVels 52 
                 +++  v++ei++   ++  ik G yVlVe+ 
  CCG91561.1 611 EKEPSVIVEINPAVARHFGIKDGQYVLVETK 641
                 4456799******999*************93 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4846.58
//
Query:       CCG91562.1  [L=813]
Description: NAD(P)H-nitrite reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-49  167.0   0.0    7.6e-49  166.5   0.0    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    2.3e-22   79.2   0.1      4e-22   78.4   0.1    1.4  1  NIR_SIR        Nitrite and sulphite reductase 4Fe-4S domain
    1.5e-16   60.7   3.2      1e-14   54.8   0.6    2.5  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    3.4e-14   52.4   0.0    8.1e-14   51.2   0.0    1.7  1  NIR_SIR_ferr   Nitrite/Sulfite reductase ferredoxin-like half
    1.9e-13   50.6   1.9    1.9e-13   50.6   1.9    3.9  3  Fer2_BFD       BFD-like [2Fe-2S] binding domain
    3.4e-13   49.5   0.0      1e-12   48.0   0.0    1.8  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    4.1e-13   49.0   0.0    1.3e-12   47.4   0.0    1.9  1  Rubredoxin_C   Rubredoxin NAD+ reductase C-terminal domain
    1.3e-07   30.7   5.7      0.032   12.9   0.1    4.2  4  HI0933_like    HI0933-like protein
    3.6e-05   23.0   1.5    3.6e-05   23.0   1.5    2.4  4  GIDA           Glucose inhibited division protein A
    0.00041   20.0   0.4        2.3    7.7   0.7    3.4  3  DAO            FAD dependent oxidoreductase
    0.00049   20.1   0.8       0.41   10.6   0.0    3.3  4  NAD_binding_9  FAD-NAD(P)-binding
    0.00063   19.9   2.5        0.4   11.0   0.9    3.2  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0029   16.7   1.7      0.052   12.6   0.6    2.5  2  FAD_binding_2  FAD binding domain
     0.0091   15.2   0.0       0.49    9.5   0.0    3.0  4  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
  ------ inclusion threshold ------
      0.064   13.7   0.2          5    7.6   0.1    2.5  2  NAD_binding_7  Putative NAD(P)-binding
       0.12   11.7   1.0       0.54    9.5   0.4    2.0  2  FAD_oxidored   FAD dependent oxidoreductase
       0.12   12.6   0.3          1    9.7   0.1    2.5  2  MazG-like      MazG-like family
       0.16   11.9   2.3       0.59   10.1   0.3    3.1  3  Rho_N          Rho termination factor, N-terminal domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.5   0.0   7.6e-52   7.6e-49       2     294 .]       5     303 ..       4     303 .. 0.93

  Alignments for each domain:
  == domain 1  score: 166.5 bits;  conditional E-value: 7.6e-52
                  SEEEE--SHHHHHHHHHHHH....HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEECTC CS
                  xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq....agakvtlvelegtclnggcllskallgvaedaeiasevvkklnqg.ielllgeevvkidpgkkkvklekkkegd 94 
                  ++++iG+G+A++++ ++l +      +++tl+++e  + ++++lls++l+g  e++ i+++ ++ ++++ i ++   e+++idp +k+v        +
   CCG91562.1   5 KLLIIGAGMAAVRFLEELVEiggtERYQITLLGKESRVGYNRILLSSVLAGETEPQTIELKSLQWFQEHgIVVRPCCEALHIDPIQKRVWT------E 96 
                  689*****************99988********************************999666666666599999999********99999......4 PP

                  EEEEEESEEEE---EEE-BCTCTTC.......TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
  Pyr_redox_2  95 eekiaydklvlAtGssprdlgipGv......aenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaalaklgkevtlveardrll.raldke 184
                  +eki ydkl+lAtGs p ++++pG         + ++  r++++++ + + l + k+++v+GgG+ G+E A  l+k g +v lv+ + +l+ ++ld +
   CCG91562.1  97 KEKIPYDKLLLATGSVPSIPKLPGIfdqsgkLAQRIYTFREINDCNHILKLLSDaKKAIVIGGGLLGIEAAYGLKKRGLQVSLVHLMGHLMeKQLDGM 194
                  579********************9999999977778888*******998877778******************************************* PP

                  HHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBE.SSTTEEE-GGGC.TE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xx RF
  Pyr_redox_2 185 lsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrt.nvpgiyaiGDva.gg 280
                  ++a+l+++lek +++v  +t+   i+++g++l    e+ +e  adlvv+a+G++p+  l+ +++g+++  + gi+vd+++++ ++pgi+aiG ++  +
   CCG91562.1 195 AGAILKQELEKLNIQVLIQTRTIGIENKGNSLAILFENHKEALADLVVIATGIEPNCLLA-KNSGIAV--NKGILVDSRMESiSHPGIFAIGECIeFN 289
                  **************************9999999*************************99.*******..**********9846***********945 PP

                  CCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxx RF
  Pyr_redox_2 281 kggpelaqaAvqqG 294
                   +++ l+ aA+qq+
   CCG91562.1 290 GQTYGLVAAAWQQA 303
                  589999****9997 PP

>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.1     4e-25     4e-22       4     151 ..     632     764 ..     629     772 .. 0.94

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 4e-25
                 SCCCCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   4 nlrnvtlcpgaglceeallDttelakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakktsarl 102
                   r+ ++c+g ++c++ + D+t+l  aie    ++++  + P+K+K avsgc +nc++++++Dig+v++       g++i++GG +g + +a+  + + 
  CCG91562.1 632 AFRTCKTCVGIEFCRFGVGDSTKLGIAIE----KRFQGIEAPAKLKLAVSGCSRNCAEATVKDIGVVAIGT-----GWEIYIGGAAGSRVRAGDLLTI- 720
                 569999***********************....9999999*******************************.....*********************6. PP

                 EEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR 103 gfvpeeevlevveaivevyrdhgdrknrkkeRlkylverlGvekFrekv 151
                    + ee l ++   +++yr    +++++ eR   +verlG+e +r ++
  CCG91562.1 721 -AKDHEEALLCIGRFIQYYR----ENAKYAERSYSFVERLGIEAIRTAI 764
                 .566677*************....********************99887 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.021        21       1      35 [.       5      43 ..       5      64 .. 0.86
   2 !   54.8   0.6     1e-17     1e-14       1      72 [.     153     225 ..     153     233 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.021
                EEEEECSSHHHHHHHHHHHHTT....SEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg....kkVtvversdkll 35
                k++++G+G  ++ + ++l e+g     ++t++  ++++ 
  CCG91562.1  5 KLLIIGAGMAAVRFLEELVEIGgterYQITLLGKESRVG 43
                689******************977777888887777765 PP

  == domain 2  score: 54.8 bits;  conditional E-value: 1e-17
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsedg 72 
                 k++v+GgG++g+E+A  l++ g +V++v+ + +l+ ++lD +a++il+++lek++i+vl +t++  ie +++ 
  CCG91562.1 153 KAIVIGGGLLGIEAAYGLKKRGLQVSLVHLMGHLMeKQLDGMAGAILKQELEKLNIQVLIQTRTIGIENKGNS 225
                 579****************************************************************987764 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   8.1e-17   8.1e-14       3      66 ..     560     621 ..     558     624 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 8.1e-17
  NIR_SIR_ferr   3 qkdgkgyymvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeL 66 
                   qkdg+  y+v  r+ +G+ t+eqlr++ad++eky +  i++T  Q +   g+++e+l+ +++eL
    CCG91562.1 560 QKDGT--YSVVPRIYGGITTPEQLRKIADVSEKYKIPMIKITGGQRIDMLGLKKEQLPLVWKEL 621
                   89987..8*******************************************************9 PP

>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   1.9   1.9e-16   1.9e-13       2      50 ..     424     471 ..     423     472 .. 0.95
   2 !    7.3   0.0    0.0062       6.1       8      50 ..     493     535 ..     489     536 .. 0.88
   3 ?   -1.3   1.8       2.9   2.9e+03      30      42 ..     628     640 ..     623     641 .. 0.91

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 1.9e-16
    Fer2_BFD   2 VCrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiLa 50 
                 VC C+gvt++eI +ai ++g +t++ev+   +agtgCg+C+  ++++++
  CCG91562.1 424 VCNCNGVTKKEILQAI-QKGSSTLKEVMTISRAGTGCGSCKGLVQRLFE 471
                 9***************.889***********************999876 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0062
    Fer2_BFD   8 vtegeIrdairraglttveevkrrtkagtgCggCrpaieeiLa 50 
                 + + e+++ i++ +l++v +v + +  g   + C+pa++ +L+
  CCG91562.1 493 LRKRELIEEIKKRQLRSVSAVFQQLAGGKEEAACKPALASLLR 535
                 6688999***8888***********99999999*****99995 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.9
    Fer2_BFD  30 rrtkagtgCggCr 42 
                 ++tka   C++C+
  CCG91562.1 628 AYTKAFRTCKTCV 640
                 69**********6 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.5   1.5e+03     163     187 ..       2      26 ..       1      63 [. 0.74
   2 !   48.0   0.0     1e-15     1e-12     115     305 .]      92     283 ..      71     283 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
  Pyr_redox_3 163 agqkvvViGgknSavDaAlelvrkg 187
                  +++k+++iG++  av    elv+ g
   CCG91562.1   2 KKEKLLIIGAGMAAVRFLEELVEIG 26 
                  6789999999999998888888775 PP

  == domain 2  score: 48.0 bits;  conditional E-value: 1e-15
  Pyr_redox_3 115 evetsketyeAkkviiAtGefdkPnklnipGeek....lvkhyskvkefhkyag........qkvvViGgknSavDaAlelvrkgaeVtvvtrgseie 200
                  +v t+ke++  +k+++AtG    P  ++ pG  +    l+++ ++++e+++ ++        +k +ViGg+  +++aA+ l ++g +V++v+   ++ 
   CCG91562.1  92 RVWTEKEKIPYDKLLLATGS--VPSIPKLPGIFDqsgkLAQRIYTFREINDCNHilkllsdaKKAIVIGGGLLGIEAAYGLKKRGLQVSLVHLMGHLM 187
                  6899***************8..777777777764322356666666666554322223333399****************************998776 PP

  Pyr_redox_3 201 keesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkkslfeldedgrpvlteeteetnv 298
                  +++   +    ++ +++le+l    +i+vl ++++  i++k ++  + +e++k+    d vv+atG +p++ + k+s+++   ++ +++++  e+   
   CCG91562.1 188 EKQ--LDGMAGAILKQELEKL----NIQVLIQTRTIGIENKGNSLAILFENHKE-ALADLVVIATGIEPNCLLAKNSGIAV--NKGILVDSRMESISH 276
                  664..5555566666666665....69************************655.77899*******************99..778999********* PP

  Pyr_redox_3 299 pglflaG 305
                  pg+f +G
   CCG91562.1 277 PGIFAIG 283
                  ****999 PP

>> Rubredoxin_C  Rubredoxin NAD+ reductase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   1.3e-15   1.3e-12       1      63 [.     324     386 ..     324     392 .. 0.91

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 1.3e-15
                   ---EEEETTEEEEEES--TT---SEEEEEE-SS-..EEEEEEETTEEEEEEEES-HHHHHHHH CS
  Rubredoxin_C   1 PvtiLkvsgidlfSvGdieeeekaeelveedkekgkYkklfikngklvGAiliGDtkesaklk 63 
                   P+  Lkv+gidl S+G ie+e   e++ + + ++g+Y+k++i+++ ++G i++G ++ + + +
    CCG91562.1 324 PIARLKVAGIDLLSFGRIEPEHGEEIVLYAEPNRGIYRKIVINEKNIIGGIFLGPSSHALEAL 386
                   8999******************99999999************************998876655 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.27   2.7e+02     142     170 ..      90     118 ..      64     130 .. 0.72
   2 !    8.3   0.7   0.00082      0.82       2      38 ..     153     189 ..     152     197 .. 0.90
   3 !    8.2   0.1   0.00089      0.89     114     163 ..     198     246 ..     194     249 .. 0.91
   4 !   12.9   0.1   3.2e-05     0.032     367     408 ..     268     308 ..     258     309 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.27
                  .EEEEE.TTEEEEESEEEE----S.S-GGG CS
  HI0933_like 142 kfrvktkseeeleadklvlAtGGl.SiPkl 170
                  + rv t ++e++  dkl+lAtG+  SiPkl
   CCG91562.1  90 QKRVWT-EKEKIPYDKLLLATGSVpSIPKL 118
                  356777.899************85488886 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00082
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HH CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrK 38 
                  + iviGgG  G+ aA  ++krg +V l+  + +l +K
   CCG91562.1 153 KAIVIGGGLLGIEAAYGLKKRGLQVSLVHLMGHLMEK 189
                  68*************************9999888877 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00089
                  HHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 114 allkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  +l++el++ ++++  +t+  ++e++ ++ + +  ++++e  ad +v+AtG
   CCG91562.1 198 ILKQELEKLNIQVLIQTRTIGIENKGNS-LAILFENHKEALADLVVIATG 246
                  799*******************887666.888889**************9 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 3.2e-05
                  TTT-BBTTSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH CS
  HI0933_like 367 sktmeskkvpgLffaGEvlDvegvtGGynlqaAwasgyaAGk 408
                   + mes + pg+f +GE+++ +g+t G ++ aAw  +++A++
   CCG91562.1 268 DSRMESISHPGIFAIGECIEFNGQTYG-LVAAAWQQAAIAAR 308
                  578**********************99.6899****999986 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   1.5   3.6e-08   3.6e-05       2      72 ..     154     219 ..     153     238 .. 0.85
   2 ?    1.0   0.0      0.18   1.8e+02     102     149 ..     200     246 ..     197     259 .. 0.74
   3 ?   -2.5   0.0       2.1   2.1e+03     342     367 ..     262     291 ..     259     312 .. 0.66
   4 ?   -3.6   0.1       4.5   4.5e+03     130     171 ..     678     717 ..     671     721 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 3.6e-08
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SHHHHHHHHEE CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLithkldtiaelsCnpsiggiakgllvrEidalggliikaadkagi 72 
                  iViGgG+ G+eAA+ ++++G++v L+ h +++++e      + g+a ++l++E+++l+ ++   +   gi
  CCG91562.1 154 AIVIGGGLLGIEAAYGLKKRGLQVSLV-HLMGHLMEK----QLDGMAGAILKQELEKLNIQVLIQTRTIGI 219
                 69*************************.888888887....89999**********999777666666666 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.18
                 HHHHHTSTTEEEE.ES-EEEEEECTTEEEEEEETTS-EEEECEEEE--T CS
        GIDA 102 teklenepnleii.eeeveeliveekkvkgvvtedgetikakavviatG 149
                 +++le+  n++++ + +   +  ++++  +++ e++++  a+ vviatG
  CCG91562.1 200 KQELEK-LNIQVLiQTRTIGI-ENKGNSLAILFENHKEALADLVVIATG 246
                 556666.56665404455555.446888899****************** PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.1
                 -GGGB-T.TSBBSSSBTEEE-CGG...GTB CS
        GIDA 342 dprqlln.tLetkkvkgLflAGqi...nGt 367
                 +   l + ++e+ +++g+f+ G+    nG 
  CCG91562.1 262 NKGILVDsRMESISHPGIFAIGECiefNGQ 291
                 55567777999***********85122554 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 4.5
                 EEEETTS-EEEECEEEE--TT-BT-EEEETTEEEESSCTTC- CS
        GIDA 130 gvvtedgetikakavviatGtflkgkihigekelsaGrlgel 171
                 g   +  e+  +++ v+a Gt    +i+ig  + s+ r+g+l
  CCG91562.1 678 GCSRNCAEATVKDIGVVAIGT--GWEIYIGGAAGSRVRAGDL 717
                 5555666677788899999*9..8889999988888887765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.19   1.9e+02     154     202 ..      68     111 ..      57     137 .. 0.80
   2 !    7.7   0.7    0.0023       2.3       2      26 ..     154     180 ..     153     183 .. 0.89
   3 !    6.0   0.0    0.0076       7.6     152     207 ..     199     253 ..     192     276 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.19
                 HHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GG CS
         DAO 154 raaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGa 202
                 + ++++G+ ++  +e+ +++  +++vw+       e+  +d++ +a+G 
  CCG91562.1  68 QWFQEHGIVVRPCCEALHIDPIQKRVWTE-----KEKIPYDKLLLATGS 111
                 5689***************7777888888.....33446899*****94 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0023
                 EEEECTSHHHHHHHHHHHHTT..EEEE CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtll 26 
                  ++iGGG  G+ +Ay L +rg  V l+
  CCG91562.1 154 AIVIGGGLLGIEAAYGLKKRGlqVSLV 180
                 58***************9999997665 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0076
                 HHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEEEEEEEEEE--GGGHH.HH CS
         DAO 152 laraaealGveilegtevtgleeedgkvwgve.rttpgendaadavVnaaGawsd.ll 207
                 l +++e+l +++l +t+  g+e++++ ++ ++ +++ ++   ad vV+a+G+  + ll
  CCG91562.1 199 LKQELEKLNIQVLIQTRTIGIENKGNSLAILFeNHK-EAL--ADLVVIATGIEPNcLL 253
                 445699***************999888888876544.544..699******9877765 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.1    0.0097       9.7       2      34 ..       8      39 ..       7      51 .. 0.83
   2 ?   -1.4   0.0       2.1   2.1e+03     135     155 ..      91     111 ..      76     112 .. 0.81
   3 ?   -2.4   0.0       4.3   4.3e+03       2      20 ..     156     174 ..     155     209 .. 0.78
   4 !   10.6   0.0   0.00042      0.41     111     154 ..     202     246 ..     181     248 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0097
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdps 34
                   i+GaG++++ +le+L++    +++ +itl  ++
     CCG91562.1  8 IIGAGMAAVRFLEELVEIG-GTERYQITLLGKE 39
                   9****************97.8889999988774 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.1
  NAD_binding_9 135 avlladgaslaadaVvLAlGh 155
                    + ++++++++ +d++ LA+G 
     CCG91562.1  91 KRVWTEKEKIPYDKLLLATGS 111
                    456789999**********95 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.3
  NAD_binding_9   2 ivGaGprGlavlerLlara 20 
                    ++G+G  G+ ++  L +r 
     CCG91562.1 156 VIGGGLLGIEAAYGLKKRG 174
                    89****9999998887764 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00042
  NAD_binding_9 111 lpegvtvev.hraevvdleeradgqavlladgaslaadaVvLAlG 154
                      e+++++v ++++ + +e+++++ a+l ++ ++  ad Vv+A+G
     CCG91562.1 202 ELEKLNIQVlIQTRTIGIENKGNSLAILFENHKEALADLVVIATG 246
                    3456778873599*******************************9 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0073       7.3       1      32 [.       8      43 ..       8      70 .. 0.92
   2 !   11.0   0.9    0.0004       0.4       1      25 [.     156     180 ..     156     186 .. 0.94
   3 ?   -2.9   0.0       8.7   8.7e+03       5      24 ..     193     212 ..     193     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0073
                   EE--SHHHHHHHHHHHC....CTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLak....agfdvlllekrdrlG 32
                   I+GaG+++  +  +L +    ++++++ll k +r+G
     CCG91562.1  8 IIGAGMAAVRFLEELVEiggtERYQITLLGKESRVG 43
                   9**************98766579***********99 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0004
                    EE--SHHHHHHHHHHHCCTEEEEEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlll 25 
                    ++G+Gl G  aAy L+k+g++v l+
     CCG91562.1 156 VIGGGLLGIEAAYGLKKRGLQVSLV 180
                    8********************9885 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 8.7
                    SHHHHHHHHHHHCCTEEEEE CS
  NAD_binding_8   5 GlsGlvaAylLakagfdvll 24 
                    G++G+ + ++L k +++vl+
     CCG91562.1 193 GMAGAILKQELEKLNIQVLI 212
                    999*9999999999999986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.6   5.2e-05     0.052       2      30 ..     154     182 ..     153     188 .. 0.92
   2 ?    2.3   0.0     0.071        71     375     402 ..     264     286 ..     244     296 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.2e-05
                    EEEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvek 30 
                    +iViG+Gl G  AA+ ++++Gl+v +v  
     CCG91562.1 154 AIVIGGGLLGIEAAYGLKKRGLQVSLVHL 182
                    69**********************99976 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.071
                    EEEBETTSBESTTEEESSBTEEE-STCE CS
  FAD_binding_2 375 GvetdengrvldadgqpipGLYAaGeva 402
                    G+ +d +++        +pG +A+Ge++
     CCG91562.1 264 GILVDSRMES-----ISHPGIFAIGECI 286
                    4444444444.....789*********8 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.16   1.6e+02     190     225 ..       2      39 ..       1      45 [. 0.83
   2 !    9.5   0.0   0.00049      0.49     147     219 ..     100     179 ..      88     193 .. 0.74
   3 ?   -0.9   0.0      0.71   7.1e+02     294     340 ..     207     247 ..     191     249 .. 0.72
   4 ?   -3.8   0.0       5.3   5.3e+03     271     316 ..     460     512 ..     430     525 .. 0.59

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.16
  K_oxygenase 190 akkriaVvGsGqSaaeifedllrr..qkkvelklvtrs 225
                  +k++++++G+G  a   +e+l++    ++++++l+ ++
   CCG91562.1   2 KKEKLLIIGAGMAAVRFLEELVEIggTERYQITLLGKE 39 
                  68999****************99854556999987665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00049
  K_oxygenase 147 learnlvlgvGtepkiPevleklegkervvHsseylerkee.......llakkriaVvGsGqSaaeifedllrrqkkvel 219
                  +   +l+l++G+ p+iP++   ++++ ++     + +++++       l ++k+ +V+G+G  + e ++ l +r  +v+l
   CCG91562.1 100 IPYDKLLLATGSVPSIPKLPGIFDQSGKLAQRIYTFREINDcnhilklLSDAKKAIVIGGGLLGIEAAYGLKKRGLQVSL 179
                  555789********999987777755555544444444444666888889999999**************9999765554 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.71
  K_oxygenase 294 rlrllpnrevesaeaegkgeveltlrneesgeeetlevdavvlATGY 340
                  ++++l +++  ++e++g+ ++ + ++n     +++  +d vv+ATG 
   CCG91562.1 207 NIQVLIQTRTIGIENKGN-SLAILFEN-----HKEALADLVVIATGI 247
                  566667777777777775.77777777.....556678999999995 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 5.3
  K_oxygenase 271 gvdaelieelyeelyeqkvkg.......eerlrllpnrevesaeaegkgevel 316
                  g  + l+++l+e+  ++++++        + + l+++  +e++++++ ++v  
   CCG91562.1 460 GSCKGLVQRLFEKTTQKSISDdpsihyyVPCIPLRKRELIEEIKKRQLRSVSA 512
                  55567888889988888888833332222223455555555555555445555 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0       0.1     1e+02       5      30 ..       1      26 [.       1      73 [. 0.82
   2 ?    7.6   0.1     0.005         5       7      46 ..     151     202 ..     146     267 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.1
  NAD_binding_7  5 lkgkkvlvvGgGevAarkvrklleag 30
                   +k++k l++G+G  A r ++ l+e g
     CCG91562.1  1 MKKEKLLIIGAGMAAVRFLEELVEIG 26
                   57899************999998866 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.005
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvapevkeele.............e 46 
                     kk +v+GgG ++ + ++ l + g +v +v       +e             e
     CCG91562.1 151 AKKAIVIGGGLLGIEAAYGLKKRGLQVSLVHLMG-HLMEkqldgmagailkqE 202
                    6899***********************9987774.223312223333333331 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.4   0.00054      0.54       3      33 ..     155     185 ..     154     186 .. 0.91
   2 ?    0.0   0.0      0.42   4.2e+02      89     144 ..     195     246 ..     192     276 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00054
  FAD_oxidored   3 vVvGGgpaGvaAAiaAaraGakvlLveergv 33 
                   +V+GGg+ G+ AA+  +++G +v Lv+  g+
    CCG91562.1 155 IVIGGGLLGIEAAYGLKKRGLQVSLVHLMGH 185
                   7*************************86666 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.42
  FAD_oxidored  89 akavleemlaeagvtvllntrlvevekegkriesvtveskegrktirAkvfiDATg 144
                   a a+l++ l++ +++vl +tr +++e +g +  ++ +e+    k+  A++++ ATg
    CCG91562.1 195 AGAILKQELEKLNIQVLIQTRTIGIENKG-NSLAILFEN---HKEALADLVVIATG 246
                   56789999999****************98.788898987...66667777776665 PP

>> MazG-like  MazG-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.6   1.6e+03      32      57 ..     231     262 ..     225     269 .. 0.68
   2 ?    9.7   0.1     0.001         1       6      41 ..     497     533 ..     493     537 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.6
   MazG-like  32 eeildeLAdviiyl......ylLAdrlGidfe 57 
                 e+ +++LAd+++++       lLA++ Gi ++
  CCG91562.1 231 ENHKEALADLVVIAtgiepnCLLAKNSGIAVN 262
                 56789999999886222222467777776665 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.001
   MazG-like   6 kaiElLkaellksveelfkallk.gseeeildeLAdv 41 
                 + iE++k  +l sv+++f+ l+  ++e++ + +LA++
  CCG91562.1 497 ELIEEIKKRQLRSVSAVFQQLAGgKEEAACKPALASL 533
                 89********************735555666677766 PP

>> Rho_N  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       7.4   7.4e+03      17      27 ..     162     172 ..     162     173 .. 0.91
   2 ?   10.1   0.3   0.00059      0.59      25      39 ..     493     507 ..     492     509 .. 0.91
   3 ?   -2.0   0.0       3.5   3.5e+03       6      14 ..     577     585 ..     576     589 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7.4
                 TT-TTGGGS-H CS
       Rho_N  17 lgienysrlRK 27 
                 lgie + +l+K
  CCG91562.1 162 LGIEAAYGLKK 172
                 89*******99 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00059
                 S-HHHHHHHHHHGGG CS
       Rho_N  25 lRKqdLIfaIlkaqa 39 
                 lRK +LI++I+k+q 
  CCG91562.1 493 LRKRELIEEIKKRQL 507
                 8************96 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.5
                 -HHHHHHHH CS
       Rho_N   6 tlseLraiA 14 
                 t+++Lr+iA
  CCG91562.1 577 TPEQLRKIA 585
                 789*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 5313.79
//
Query:       CCG91563.1  [L=119]
Description: Ferredoxin subunit of nitrite reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-14   53.9   0.0    1.7e-14   53.6   0.0    1.1  1  Rieske_2  Rieske-like [2Fe-2S] domain
    2.2e-12   46.7   0.0    2.6e-12   46.5   0.0    1.1  1  Rieske    Rieske [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   1.9e-18   1.7e-14       4     103 ..      13     107 ..      10     108 .. 0.95

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 1.9e-18
                 EEEECCCS-TTB-EEEEETTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS-TTSB-BEE-EEESTSEEE CS
    Rieske_2   4 pvckledlvketgvaalvdgkqvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecledeevslkvypvrvedgkve 102
                 +vc+l++lv + g +  +++ ++alf +++++++A++ ++p  +  +++++l ++k    +  +Pl+   f+ +tG+c   e++++kvyp+ v+++++ 
  CCG91563.1  13 QVCHLNELVSGIGRCFRIGKIKIALFKTRSGKIWAVEGKCPH-QGGPIAEALYDEK----TFICPLHAYPFSFETGNCTISEKFRIKVYPAFVKNQQIF 106
                 79****************************************.7999999998777....999*********************************998 PP

                 E CS
    Rieske_2 103 v 103
                 +
  CCG91563.1 107 I 107
                 7 PP

>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0     3e-16   2.6e-12       3      78 ..      12      87 ..      10      97 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 3e-16
                EEEEEGGGC-TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEE.TTSBEEE CS
      Rieske  3 vavakesdvpegdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwayd.adGkvik 78
                + v++ +++ +g  + +++g+ ++++++++ g++ A+++ C+H+g p++e   dek +++Cp+H   ++ ++G+++ 
  CCG91563.1 12 YQVCHLNELVSGIGRCFRIGKIKIALFKTRSGKIWAVEGKCPHQGGPIAEALYDEK-TFICPLHAYPFSfETGNCTI 87
                789999999999999999********************************999788.****************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 784.57
//
Query:       CCG91564.1  [L=433]
Description: Nitrate transporter [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-31  108.1  47.6    4.4e-31  108.1  47.6    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1  47.6   2.5e-35   4.4e-31       5     353 .]      25     355 ..      18     355 .. 0.78
   2 !   12.6   6.4   2.6e-06     0.047     118     181 ..     335     399 ..     332     424 .. 0.67

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 2.5e-35
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagal 102
                 +f +++a+++++ a+  ++a++l ++p e g++++l  l  + + + lG     fG +++ l+++ ++++  ++ ++fa++l  +++  +l G++ ga+
  CCG91564.1  25 YFDISFAIWVILGAVGTFIADELKLTPVEKGIMVALPILSGSSLRIALGIAESGFGGKKTALIAMGVSFIPlVWGFAFAHTLKEIYFIGILLGVA-GAS 122
                 56667788888888888**********************************999*****999999999999344444767777***********9.8** PP

       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawk 201
                 f++++ ++++wf ++++g+++gl ++g + G++l  l+g+++a+ +gW++vf ++ ++++++f++ ++++ e++p++++++ + e          ++++
  CCG91564.1 123 FAVAIPMASRWFLPQHQGLVLGLTGSG-NSGTLLSTLFGPMIAHRYGWHSVFGFFFLLLFIVFLF-VFFFAEDAPRPQNERITGE----------SIIR 209
                 *********************988875.66999999**************************995.4555555555555555555..........3344 PP

       MFS_1 202 allkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssa 300
                  l+  +  w++ +   l+f gf g++++l ++l++ +g    + ag+l  ll + g  l++l+g+++d+lg   + +l+ll+ l +++++++   +  +
  CCG91564.1 210 VLCQ-KKTWLFSLLYSLNFGGFIGFSSYLGFFLVDEYGVE-KVKAGGLQTLLIASGSLLRPLGGAIADKLGG--IKVLFLLISLGSFFAFLPSFYF--P 302
                 5554.5588777777777889999****************.8***************************999..3333333333333333333333..3 PP

       MFS_1 301 vllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 +ll l  +++ + +lg+++++++ l+   +  ++ g  +g+++ ag++gg+l p
  CCG91564.1 303 LLLELTPIFFMMgCLGLANGAIFQLVGTQTA-SHIGLTTGIVGAAGGIGGFLLP 355
                 3333333333333555555555555554442.667****************976 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.6e-06
       MFS_1 118 ergraigllsagfslGailgpllggllasslg.Wravfyilaivsllafvlfllllpeepperkr 181
                 + g+ +g+++a+ ++G  l p++ g + +s+g  +  f+++ +++l++++l ++ll e +++ ++
  CCG91564.1 335 HIGLTTGIVGAAGGIGGFLLPIFLGKIKESFGsCSFGFILFSLFFLICGILSIVLLSEVKRPFPP 399
                 67899***********************8888766667777777777777655555333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3219.36
//
Query:       CCG91565.1  [L=807]
Description: Outer membrane receptor protein, mostly Fe transport [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.028   15.0   0.1      0.069   13.7   0.1    1.7  1  Plug      TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   3.9e-06     0.069      62     104 ..     131     172 ..     110     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.9e-06
                 EETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHCTTSSTG CS
        Plug  62 lvDGvpianggsgagdlssidpedierievlkGpasalyGsda 104
                 +++G++++  ++ga++   ++ ++ie+++ + Gp+ a +G+  
  CCG91565.1 131 YINGIEMN-IQNGAFQGIPMNWNMIESLDFIEGPSQAVFGATQ 172
                 89****96.7888888888889******************864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (807 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 6061.39
//
Query:       CCG91566.1  [L=267]
Description: Hemoglobin-like flavoprotein fused to Roadblock/LC7 domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.9e-12   45.6   0.0      4e-11   43.4   0.0    2.2  2  Globin       Globin
    1.3e-05   24.9   0.0    2.1e-05   24.2   0.0    1.4  1  Robl_LC7     Roadblock/LC7 domain
     0.0027   17.6   0.4     0.0047   16.8   0.3    1.6  1  Protoglobin  Protoglobin


Domain annotation for each model (and alignments):
>> Globin  Globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   6.7e-15     4e-11       1     109 [.       5      98 ..       5      99 .. 0.95
   2 ?   -3.5   0.0       2.6   1.6e+04      23      34 ..     153     164 ..     147     165 .. 0.79

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 6.7e-15
                 HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSGGGGGGSTTTTTTT-HHHHCTSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCSTT--H CS
      Globin   1 dkalvkaswekvkanaeelgaeilkrlFkaypdtkklFkkfgdlssaedlksspkfkahakkvlaalgeavknldndealkaalkklaarHaergkvdp 99 
                 +++l+++sw  v ++a+e g+ ++krlF++ p++++lF    +            ++++++k+++ l+ +v nl++ ++   a+k+la+rH+++g v+ 
  CCG91566.1   5 QIKLIQKSWLYVIDKADEAGRLFYKRLFEVEPNVRSLFR---E-----------NIEKQGRKLIDVLNWIVLNLQDIDTALDAAKELARRHVKYG-VEV 88 
                 789************************************...3...........489*****************9999*****************.*** PP

                 HHHHHHHHHH CS
      Globin 100 anFklfgeal 109
                 ++++l+g+ l
  CCG91566.1  89 EHYPLIGHTL 98 
                 *****99987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.6
                 HHHHHHHHSGGG CS
      Globin  23 ilkrlFkaypdt 34 
                 i   lF+a+pd+
  CCG91566.1 153 IISDLFAANPDI 164
                 667899999986 PP

>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   3.6e-09   2.1e-05       6      90 ..     155     238 ..     150     239 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.6e-09
                 HHHCCHHCTECEEEEEETTS-EEEECCSSSS-HHHHHHHHHHHHHHHHHHHHHCTSSSECEEEEEETTEEEEEEECTTTEEEEEE CS
    Robl_LC7   6 leelqsvpgvrgalvvskdGlviatstldnddadqlAalasgllsaakaaarelgegelkelliegkkgelyltpagegalLvvl 90 
                  ++++  p++ g+++ +++G  +++ +  ++ ++++A+++s+  + ak++++  g+g++ e+ i g + +ly++ a++++ +++l
  CCG91566.1 155 SDLFAANPDILGIVISTNKGATVSR-CSFSNYSNIIASVVSSTIGHAKRLCELAGAGNILETKITGSQVQLYICMADPHSAIGIL 238
                 6788899******************.****************************************************9998875 PP

>> Protoglobin  Protoglobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   7.9e-07    0.0047      14     105 ..       1      92 [.       1     130 [. 0.90

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.9e-07
                  -SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTS.HHHHHHHCH..HCHHHHHHHHHHHHHHHCCCSSCCHHHHHHHHHHHHHHCHCT--HHHHH CS
  Protoglobin  14 lteedlaaLralapliealipavvdafYekllsf.petarifet..ssqierlkdflksyllklfsgpfdsayveyldkvGkmhtrlgleprwyi 105
                  +t+e+++++++ + ++ +  ++  + fY++l +  p+ +  f++  ++q  +l d l++  l+l  +++ +  +++ ++++++h++ g+e+ +y 
   CCG91566.1   1 MTQEQIKLIQKSWLYVIDKADEAGRLFYKRLFEVePNVRSLFREniEKQGRKLIDVLNWIVLNL--QDI-DTALDAAKELARRHVKYGVEVEHYP 92 
                  699******************************9788888999999999999999999999999..444.45689******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1071  (0.0597356); expected 358.6 (0.02)
Passed bias filter:                      806  (0.0449551); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 1982.20
//
Query:       CCG91567.1  [L=219]
Description: SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-15   57.0   0.0    9.4e-15   55.1   0.0    2.0  2  Methyltransf_25  Methyltransferase domain
    1.2e-14   54.4   0.0      4e-14   52.7   0.0    1.9  2  Methyltransf_31  Methyltransferase domain
    6.3e-11   42.9   0.0    1.4e-10   41.8   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
      3e-10   40.2   0.0    3.7e-10   39.9   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    3.7e-10   40.3   0.0    7.2e-10   39.4   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    9.8e-07   28.3   0.0    1.4e-06   27.8   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    5.5e-06   26.0   0.0    7.7e-06   25.6   0.0    1.2  1  MTS              Methyltransferase small domain
      8e-05   22.2   0.0     0.0001   21.8   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00023   21.1   0.0    0.00058   19.8   0.0    1.6  2  Methyltransf_18  Methyltransferase domain
    0.00031   20.2   0.0    0.00057   19.4   0.0    1.6  1  Methyltransf_4   Putative methyltransferase
     0.0045   16.3   0.0     0.0048   16.2   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
      0.021   14.5   0.0       0.03   14.1   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.024   14.2   0.0      0.032   13.8   0.0    1.5  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   6.8e-18   9.4e-15       1      94 [.      47     139 ..      47     141 .. 0.89
   2 ?   -2.0   0.0       4.4     6e+03      34      59 ..     187     210 ..     182     213 .. 0.67

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 6.8e-18
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      vLd+GcGt ++++++akr++kak++gvD s++ml + r+r+ee +l  ++++ +g + ++++++  fD+ +s+  lhhl+  +l  a + i++ 
       CCG91567.1  47 VLDMGCGTADISIRFAKRFPKAKIIGVDGSSSMLSIGRKRIEEYHLshSIQLFEGVIPNWSYPA-PFDVLLSNSLLHHLP--RLTIAWQAIKKY 137
                      9******************99*********************988888*************997.*******766***98..455566666665 PP

                      EE CS
  Methyltransf_25  93 Lk 94 
                       k
       CCG91567.1 138 AK 139
                      55 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.4
                      HHHHHHHHHHTTTTEEEEESBCCGBS CS
  Methyltransf_25  34 leaareraeeeglnvefvqgdaedlp 59 
                      +e++r++++++  n++f + +++d++
       CCG91567.1 187 IEEIRREIQSK--NLSFTVEQISDFH 210
                      67778888655..6666666666655 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   2.9e-17     4e-14       7     110 ..      47     147 ..      43     195 .. 0.88
   2 ?   -0.3   0.0      0.62   8.6e+02      38      60 ..     152     173 ..     147     211 .. 0.55

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 2.9e-17
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkileeier 99 
                      vlD GCGt ++++++a + +pka+++G+D s  +++  r++ ++  l+  +++ +g i + +  +  ++fD++lsn++l++l+ +  + + i++
       CCG91567.1  47 VLDMGCGTADISIRFA-KRFPKAKIIGVDGSSSMLSIGRKRIEEYHLShSIQLFEGVIPNWS--YP-APFDVLLSNSLLHHLPRLTIAWQAIKK 136
                      8***************.779*********************998888778888888888877..88.9************************** PP

  Methyltransf_31 100 vlkpggillie 110
                      + k+g+ +   
       CCG91567.1 137 YAKKGTFIFFV 147
                      ***99866544 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.62
  Methyltransf_31  38 eeaielArenaqklgldnveFeq 60 
                      +e+ie+Ar    +  ++n+ F  
       CCG91567.1 152 PESIEKARLL-TESYVQNAPFLL 173
                      5666666553.334455554443 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   9.9e-14   1.4e-10       1      97 [.      48     142 ..      48     144 .. 0.91

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 9.9e-14
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L+ GcGt++++ ++++++p ++++gvD s+s++   ++++ +++  +   ++l++  + + + ++ fD+ +++++lhhl+ +  +++ i+k  k
       CCG91567.1  48 LDMGCGTADISIRFAKRFPKAKIIGVDGSSSMLSIGRKRIEEYHLSH--SIQLFEGVIPNWSYPAPFDVLLSNSLLHHLPRLTIAWQAIKKYAK 139
                      89*****************************************9865..7777777766666668**************************999 PP

  Methyltransf_12  95 pgG 97 
                      +g 
       CCG91567.1 140 KGT 142
                      986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   2.7e-13   3.7e-10      13     153 ..      32     192 ..      19     203 .. 0.66

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 2.7e-13
  Methyltransf_23  13 lerllpk..lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq......eaaepqgkfdlIvlrevlehvp 96 
                      ++r+++    +  g vLd+GcGt   +  +++++   +++gvD s+ + +i +k++   + ++  q        +   + fd+  ++ +l+h+p
       CCG91567.1  32 IDRFAAIfsAFNEGLVLDMGCGTADISIRFAKRFPkaKIIGVDGSSSMLSIGRKRIEEYHLSHSIQlfegviPNWSYPAPFDVLLSNSLLHHLP 125
                      455554444799999*********8777776665558**************9755555555552332222222233555*************** PP

  Methyltransf_23  97 dppellrqiatllkpgGylllseplasl.......kedrllldwlylvpag...rhisffsarslke 153
                       ++ + + i+++ k g+ +++ +  ++          ++ +++ ++l +++    ++  f+ +++++
       CCG91567.1 126 RLTIAWQAIKKYAKKGTFIFFVDLIRPEsiekarlLTESYVQNAPFLLKRDffnSLLASFTIEEIRR 192
                      ***********************76664343332222222333344444433334445555555555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   5.2e-13   7.2e-10       1      96 []      48     146 ..      48     146 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 5.2e-13
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      Ld+GcGt  ++  +akr+  a+++gvD s  ml + +++++e +l  ++++ ++ + +  ++   fD+ +s++ lhh++++  a++ i++  k+
       CCG91567.1  48 LDMGCGTADISIRFAKRFpkAKIIGVDGSSSMLSIGRKRIEEYHLshSIQLFEGVIPNWSYPA-PFDVLLSNSLLHHLPRLTIAWQAIKKYAKK 140
                      8**************9999************************99*9999********99999.****************************** PP

                      EEEEEE CS
  Methyltransf_11  91 gGllvi 96 
                      g ++++
       CCG91567.1 141 GTFIFF 146
                      988775 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0     1e-09   1.4e-06      50      98 ..      46      93 ..      26     115 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1e-09
                     EEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS CS
  Ubie_methyltran 50 kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki 98
                      vlD+ +Gt+D+++++++    k k++++D +++mL++g+k+++e   +
       CCG91567.1 46 LVLDMGCGTADISIRFAKRF-PKAKIIGVDGSSSMLSIGRKRIEEYHLS 93
                     58***************997.678*******************997665 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   5.6e-09   7.7e-06      31     111 ..      43     125 ..      15     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 5.6e-09
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEEEE---STTTC CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdlivsNPPfhagk 111
                  +g vlD+GcG+  +++ +ak+ p+a++  vd +   l + ++ +e+ +l+  +++++  + +   ++ fd+++sN  +h+  
  CCG91567.1  43 NEGLVLDMGCGTADISIRFAKRFPKAKIIGVDGSSSMLSIGRKRIEEYHLShsIQLFEGVIPNWSYPAPFDVLLSNSLLHHLP 125
                 5678********************************************999778888777777777999*****998777655 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   7.5e-08    0.0001     164     257 ..      46     144 ..      20     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 7.5e-08
        PrmA 164 evlDvGtGSGiLaia.aakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellk...eekadvivaNILaevliela..edikklvkeggll 256
                  vlD+G+G++ ++i  a+++  +k+++vD  +  +++ ++ +e  +++++++++ ++ +++    +++dv+++N L + l +l+   ++ k  +++g++
  CCG91567.1  46 LVLDMGCGTADISIRfAKRFPKAKIIGVDGSSSMLSIGRKRIEEYHLSHSIQLF-EGVIPNwsyPAPFDVLLSNSLLHHLPRLTiaWQAIKKYAKKGTF 143
                 69************73678999*****************************883.333333334689*************9987223455555666666 PP

        PrmA 257 i 257
                 i
  CCG91567.1 144 I 144
                 6 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.2e-07   0.00058       3      69 ..      33      98 ..      31     102 .. 0.93
   2 ?   -2.5   0.0       3.2   4.5e+03     121     140 ..     187     206 ..     181     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.2e-07
  Methyltransf_18  3 kRLkaiaslvekgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkiev 69
                     +R +ai+s  + +  v+D G+  + ++i  +k+    k+i +D +++ l+  ++ ie+++l+++i++
       CCG91567.1 33 DRFAAIFSAFN-EGLVLDMGCGTADISIRFAKRFPKAKIIGVDGSSSMLSIGRKRIEEYHLSHSIQL 98
                     58899999999.5589***********************************************9997 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.2
  Methyltransf_18 121 aeelRkylvengfkiedEel 140
                      +ee+R+ +++++ +++ E++
       CCG91567.1 187 IEEIRREIQSKNLSFTVEQI 206
                      68899999999888888876 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   4.2e-07   0.00057       4      50 ..      46      92 ..      43     176 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.2e-07
                    EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTT CS
  Methyltransf_4  4 vvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealel 50
                    +vl++GcG  ++ ++ Ak++P+ +++G++ +++++    k+ie+++l
      CCG91567.1 46 LVLDMGCGTADISIRFAKRFPKAKIIGVDGSSSMLSIGRKRIEEYHL 92
                    79***************************999999888888888843 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.5e-06    0.0048      35     116 ..      19      98 ..       8     212 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.5e-06
                 --SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHHHTS-SSS-EEE CS
        CMAS  35 yferddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrvdeldlerkvev 116
                 y + d  t ++A ++++  i+     ++G  +Ld+GcG   + +r ++r+  +k++g+  S+      +kr++e  l+++ ++
  CCG91567.1  19 YASADFSTAHQAVIDRFAAIFSA--FNEG-LVLDMGCGTADISIRFAKRFpKAKIIGVDGSSSMLSIGRKRIEEYHLSHSIQL 98 
                 33444445555666666666654..3455.59*****************9679**********************99998776 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.2e-05      0.03      77     156 ..      47     125 ..      21     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
                 EEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-GGGTTGGG-SEEEEEESSBBSS-- CS
        PCMT  77 vLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDGrkGyeekaPYdaihvgaaapeiP 156
                 vL++G+G+   +  +a+ + + +++++++ + ++ +  ++++++ +l+ ++++ +      +   aP+d+++     +++P
  CCG91567.1  47 VLDMGCGTADISIRFAKRFPK-AKIIGVDGSSSMLSIGRKRIEEYHLShSIQLFE-GVIPNWSYPAPFDVLLSNSLLHHLP 125
                 9*********99999999965.56*********************9993444444.456789999****988766666666 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.3e-05     0.032       3      57 ..      46     102 ..      44     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
  Methyltransf_15   3 vilDlfsGaGGnviqfalvfe..kviaieinleklacaqhNaevYgvsdkitlvlgd 57 
                      ++lD+ +G+   +i fa+ f+  k+i+++ + + l +  +  e Y  s+ i+l  g 
       CCG91567.1  46 LVLDMGCGTADISIRFAKRFPkaKIIGVDGSSSMLSIGRKRIEEYHLSHSIQLFEGV 102
                      69*****************963369**************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 1756.01
//
Query:       CCG91568.1  [L=120]
Description: Lipoprotein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-22   79.2   0.0    2.5e-22   79.0   0.0    1.1  1  DPBB_1    Lytic transglycolase


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   1.4e-26   2.5e-22       3      82 ..      28     111 ..      26     112 .. 0.90

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 1.4e-26
                 EEEEEE-CCC-TTSSB-.-TTS-EEE-SSS-TT-EEEE..TT.--EEEEEEEE----STTECEEE-HHHHHHHT-TTTS-EEEE CS
      DPBB_1   3 agsaslykdgtacGecy.evkcltaahktlplgtycrv..ls.gksvtVtitDrgpfppgrhiDLSkaAfeklakpraGvipVk 82 
                 +g as+y +    G ++ +   +taahktlp+gty+ v  l+ +++v+V i Drgpf+++r+iDLSk+A+ekl ++++G++pV+
  CCG91568.1  28 RGLASWYAEPGHVGRKFvKEHKFTAAHKTLPFGTYVEVhnLKnNRTVIVCIDDRGPFIKNRIIDLSKPAAEKLEMIHSGIVPVE 111
                 589****7777777666366789***************99667****************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 953.73
//
Query:       CCG91569.1  [L=147]
Description: Organic hydroperoxide reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-15   57.2   0.0    2.3e-15   56.9   0.0    1.1  1  OsmC      OsmC-like protein


Domain annotation for each model (and alignments):
>> OsmC  OsmC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   1.3e-19   2.3e-15       3      99 ..      44     141 ..      41     142 .. 0.86

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 1.3e-19
                 XSSB-HHHHHHHHHHHHHHHHHHHHTCCCT---SCEEEEEEE..EEECCECTCEEEEEEEEEEE-SS-H..HHHHHHHHHHHHHSHHHHHHCT-SSSEE CS
        OsmC   3 gsgpsPeelllaalasCfaitlravakkkgikledlevevea..erdpegakgiteirlkvevkipgadseeklkkllekaekrCpvsntlkngvkvel 99 
                 ++  sPe ll a+l+sC+++t+ +va+++++  +++e+ +++  +r++ +   + ++ lk ++ +p  +++ek+++ll+kae++C ++++lk +v++e 
  CCG91569.1  44 KNTWSPETLLPASLSSCLILTFDSVAEANHFHWHKIECQADGtlDRKDGAR-YFVHFSLKTKLFVPPGTDKEKARRLLRKAEENCLITQSLKGSVELES 141
                 5578*************************9999***999998544443333.5888888888888988989************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1255.81
//
Query:       CCG91570.1  [L=80]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.043   13.9   0.0      0.043   13.9   0.0    2.0  2  Zn-ribbon_8  Zinc ribbon domain


Domain annotation for each model (and alignments):
>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.4e-06     0.043      13      40 .]      18      45 ..       1      45 [. 0.89
   2 ?   -1.7   0.6      0.18   3.3e+03      26      33 ..      67      73 ..      57      77 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-06
  Zn-ribbon_8 13 hefevlqsisdapltaCPeCgsevrrvi 40
                 +++e+ qsi+d+plt+ Pe g++ +r+i
   CCG91570.1 18 KRYEIEQSIADKPLTHHPETGEPIQRII 45
                 58999*********************97 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.18
  Zn-ribbon_8 26 ltaCPeCg 33
                    C  Cg
   CCG91570.1 67 SSSC-GCG 73
                 3445.454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 632.13
//
Query:       CCG91571.1  [L=304]
Description: Sugar kinase, ribokinase family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-55  189.2   0.0    1.2e-55  189.0   0.0    1.0  1  PfkB          pfkB family carbohydrate kinase
    4.4e-06   26.3   0.0    7.4e-06   25.5   0.0    1.3  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.0   0.0   1.3e-59   1.2e-55       4     301 ..       2     292 ..       1     293 [. 0.94

  Alignments for each domain:
  == domain 1  score: 189.0 bits;  conditional E-value: 1.3e-59
                 EEEEEEEEEEEEEECSSH..TTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTT CS
        PfkB   4 vvviGealidliavsekl..egelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvded 100
                 +++iG+++id+  ++e++  ege+v + + + s GG+gaN+Av++a + ++  +i  vG D+fG++  ++l++ gvdt++++ +++++tg+a+i++d+ 
  CCG91571.1   2 LWIIGSCNIDVTVKVERFpkEGETVLALESHISIGGKGANQAVGAAVWKIKPKLIASVGSDTFGKQAFQTLQQYGVDTSSIIASDKHPTGMAWIEIDKR 100
                 689**********************************************************************************************99 PP

                 SEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTE.EEEEECESSSHHHHHHHHHHHCTESEEEEEHHHHHHHH CS
        PfkB 101 gertivfnrgaaadltkeeleededlleeadllyisgllsselpeavleelaeaaknggt.fdpnlldplgaqfkeallellaladllkpneeElealt 198
                 g++ i++ +ga+adl   +   ++  l++ d++        e+p++++e +++ ak +g+  ++nl+++++      l+ ll+l+dll +ne+E  +lt
  CCG91571.1 101 GKNRITVVPGANADLLAGQILPNLVSLKQTDYVLAQ----LEIPVKSVESAFSYAKRKGAtTILNLSPSFE-----GLEVLLSLTDLLVLNEKEYCQLT 190
                 *****************9887777777888887665....6**************9999555555555555.....799999***************** PP

                 TSCT..HSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE.TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSS CS
        PfkB 199 gekl..edieealaalhklkakgaktvvvtlGkeGalvve.kdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqkkg 294
                 + ++  e++eea+a l+     g++ +vvt G+ Ga+++  ++  +++p+ pkv+v+D+ GAGD+f g f a+   gks+eeal++ +  ++l++ + g
  CCG91571.1 191 KISSflEAMEEAKAHLFR---YGITALVVTAGELGAFLSMkNSSFVHFPS-PKVQVIDSSGAGDAFLGTFSAWMEMGKSIEEALKASVISGSLACCRLG 285
                 ****************99...99****************98999999999.************************************************ PP

                 SSTCSCC CS
        PfkB 295 aiaslpt 301
                 +++++p+
  CCG91571.1 286 TMNAIPD 292
                 **99885 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   8.2e-10   7.4e-06     114     224 ..     170     273 ..     154     276 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 8.2e-10
                   HHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BTHHHHHHHHHHHH CS
  Phos_pyr_kin 114 eeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaerietknthGtGCtlssaiaae 210
                   e Ll l+++++ N +E+ +L++   + +e m+ea  +l ++g +a +++ g+l    a    + +++++++++++++++  +  G+G+++     a 
    CCG91571.1 170 EVLLSLTDLLVLNEKEYCQLTK-ISSFLEAMEEAKAHLFRYGITALVVTAGEL---GAF---LSMKNSSFVHFPSPKVQVIDSSGAGDAFLGTFSAW 259
                   5699****************98.455799**********************98...333...566******************************** PP

                   HHCTSSHHHHHHHH CS
  Phos_pyr_kin 211 lakgesleeAvkkA 224
                   +  g+s+eeA+k +
    CCG91571.1 260 MEMGKSIEEALKAS 273
                   **********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2606.42
//
Query:       CCG91572.1  [L=142]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-39  134.1   0.0    3.2e-39  133.6   0.0    1.2  1  UPF0047   Uncharacterised protein family UPF0047


Domain annotation for each model (and alignments):
>> UPF0047  Uncharacterised protein family UPF0047
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   1.8e-43   3.2e-39       2     114 ..      25     136 ..      24     137 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.8e-43
                 -HHHHHHHHHHHT.SEEEEEEEESSSSEEEEEEESSSHHHHHHHHHHHHHHSTTT..T-GGGTTS..THHHHHHHHHH-SEEEEEEETTEE---TTEEE CS
     UPF0047   2 iteeveeavkesgvkeGlvlvfsrhttasltinEnadpdvqeDleealeklvpee..eYrhnaegpdnadaHlkssllgssltipvedgklalGtwqsi 98 
                 +t+++ee ++++g+ +Gl+++f++htta++ti+E+adpdv +D+  +l+++vp +  +Y h+ eg  na+aH+k++llg+s++  v++g+l lG+wq+i
  CCG91572.1  25 LTDKIEEEIQHRGWYDGLLHIFIPHTTAGITIQEDADPDVIKDILYVLDRIVPWHdpSYCHT-EG--NAAAHIKTALLGNSVHCNVKEGRLRLGRWQGI 120
                 79****************************************************99******.99..******************************** PP

                 EEEESS-SSEEEEEEE CS
     UPF0047  99 ylveldgpreRkvvvq 114
                 +l+e+dgpr+Rkv+++
  CCG91572.1 121 FLCEFDGPRTRKVQLT 136
                 *************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1078.35
//
Query:       CCG91573.1  [L=126]
Description: Nitrogen regulatory protein PII [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-15   55.4   0.3    8.8e-15   55.2   0.3    1.1  1  P-II      Nitrogen regulatory protein P-II


Domain annotation for each model (and alignments):
>> P-II  Nitrogen regulatory protein P-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.3   4.9e-19   8.8e-15       1     101 [.       7     107 ..       7     108 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 4.9e-19
                 EEEEEEGGGHHHHHHHHHHTTGGCEEEEEEEEEESTCCEEEECTTEEEEEEEEEEEEEEEEEEGGGHHHHHHHHHHHH-SSSTTSEEEEEEEESEEEET CS
        P-II   1 ieaiirpekleevkeaLekagvkgltvtevkGrGkqkghtelyrgaeyevellpkvkleivvsdedvekvveaiikaaktgeiGDGkiFvlpveeviri 99 
                 ieai++p+kl e+++ L k ++ ++t+ +vkG  ++++++e yrg+ey   l    kleivv++ ++++++ a+ +  + ++   Gki v+p+++v+ i
  CCG91573.1   7 IEAIVKPFKLGEIRKSLFKEEIFSITIYKVKGLEEEENKIEKYRGDEYFPVLKTLYKLEIVVPKTKLQTILMALNNIINIDKNTGGKITVTPISRVYLI 105
                 89***********************************************999999***************************999***********988 PP

                 TT CS
        P-II 100 rt 101
                  t
  CCG91573.1 106 VT 107
                 66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1019.42
//
Query:       CCG91574.1  [L=176]
Description: Amidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-20   71.7   0.0    1.5e-19   70.8   0.0    1.4  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   8.4e-24   1.5e-19       1     171 [.      10     150 ..      10     154 .. 0.94

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 8.4e-24
  Isochorismatase   1 talvviDmqndfveegvkeseeisavveninkllkaarkagipviftrdvheleevkgdlderkaaphfkpgttgaelvpelaplegdvvvdKt 94 
                      tal++iD+q++++      +e+ ++vv+++++ +k a+  ++p  ++++v+e                 k gtt++e+++      + + + K+
       CCG91574.1  10 TALLLIDLQDKLL----SVIENRERVVQKAVQIVKLAKLFSLPLYISEQVPE-----------------KLGTTCKEILEVAG---DVPRLSKN 79 
                      89***********....9**********************************.................**********9988...789999** PP

  Isochorismatase  95 rfsafagtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlkqafatvi 171
                      +fsa        iL +   k+i+++Gi+t++CV++t++d++ ++ +++v+ DA++++++ +h+ ++++++q  + ++
       CCG91574.1  80 TFSAS------PILPADIPKNILVCGIETHICVRQTVYDLRMRDKTPYVLGDAIGSRNQIDHQLGIEEMRQDRVLIT 150
                      ****9......89999999***************************************************7655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1284.29
//
Query:       CCG91575.1  [L=428]
Description: Diaminopimelate decarboxylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-55  188.8   0.0    1.4e-55  188.4   0.0    1.2  1  Orn_Arg_deC_N    Pyridoxal-dependent decarboxylase, pyridoxal
    4.2e-28   97.5   0.0    5.3e-28   97.1   0.0    1.1  1  Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-termina
    4.3e-05   23.3   0.0    6.6e-05   22.6   0.0    1.2  1  Ala_racemase_N   Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4   0.0   2.3e-59   1.4e-55       3     246 ..      36     291 ..      34     292 .. 0.91

  Alignments for each domain:
  == domain 1  score: 188.4 bits;  conditional E-value: 2.3e-59
                    HHHHHHHHHHHHCT..CCEEEEEGGG---HHHHHHHHHTTEEEEESSHHHHHHHHHCTTTGGGEEEEESS--HHHHHHHHHCTHTEEEESSHHHHH CS
  Orn_Arg_deC_N   3 sierklkrwkkalp..rikvfYavKansdlavlellaelGlgldcaSkaElelvlaagvsperiifanpckqreelryalekgvkvvtvdnveele 96 
                    +i+ ++ r++k l+  ++ ++YavKans+l +l+lla+lG g+d +S +El++vl+ag++p++ +fa+  k+r+e+++al +g+  + v+++eel 
     CCG91575.1  36 TIIDHYTRFEKLLEplDHLICYAVKANSNLWILKLLANLGSGFDLVSGGELYRVLRAGGDPKKCTFAGVGKTRSEIEEALRVGIYSFIVESEEELL 131
                    7899999******9999******************************************************************************* PP

                    HHHHHHCC....EEEEEEEE-SCCSSSSTCCCSSSTTSSSSEEHCHHHHHHHHHHHHTTEEEEEEE---BSSC-SCHHHHHHHHHHHHHHHHHHHH CS
  Orn_Arg_deC_N  97 klaklape....akvllRiktdvsaatcelistggessKFGaaleeavealleaakeenlqlvGvsfHvGSgvsdleafvkavekalklfdelael 188
                     ++ +a++    a+v  Ri++dv+aat+  i+tg + +KFG+al++  +  ++++k +++ l G+++H+GS+++++ +f++a++k+l l++++++ 
     CCG91575.1 132 TIDAIAKKlsiqAPVAFRINPDVQAATHAKITTGSDVNKFGIALSQVSDLFEKCSKLDGVLLKGIQIHIGSQIQQVGPFLQAIQKVLPLVEKARQK 227
                    ***********9********************************9*********************************************999854 PP

                    T---SEEE--S-BS-HCSTTSSSST............HHHHHHHHHHHHHHHHHTSSS-EEEE--SHHHH CS
  Orn_Arg_deC_N 189 GvklkiLdvGGGfgveyeeeeeplk............leeiaekirealeeafpgdkevtiiaEpGRalv 246
                     + +++Ld+GGG g+ ye++ e  +            l+ ++ +i + ++       ++++++EpGR+lv
     CCG91575.1 228 -YRVEFLDIGGGIGIVYEQAIESGRedwwkernesltLDRYVASILPLVKP-----IGMRLLVEPGRVLV 291
                    .7999*************977766656755555555455555555555544.....4789*******998 PP

>> Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   8.8e-32   5.3e-28       2      98 .]      30     382 ..      29     382 .. 0.82

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 8.8e-32
                      EEEE.......................................................................................... CS
                      xxxx.......................................................................................... RF
  Orn_DAP_Arg_deC   2 yvyd.......................................................................................... 5  
                      yvy+                                                                                          
       CCG91575.1  30 YVYSaqtiidhytrfekllepldhlicyavkansnlwilkllanlgsgfdlvsggelyrvlraggdpkkctfagvgktrseieealrvgiysfi 123
                      6666667777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                      .............................................................................................. CS
                      .............................................................................................. RF
  Orn_DAP_Arg_deC   6 .............................................................................................. 5  
                                                                                                                    
       CCG91575.1 124 veseeelltidaiakklsiqapvafrinpdvqaathakittgsdvnkfgialsqvsdlfekcskldgvllkgiqihigsqiqqvgpflqaiqkv 217
                      7788888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                      ...........................................................................GGEEEEEEEEEEEEETCEE CS
                      ...........................................................................xxxxxxxxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC   6 ...........................................................................eagvLvtrViavkesekkk 24 
                                                                                                 +ag+Lv++V++vk+ ++kk
       CCG91575.1 218 lplvekarqkyrvefldigggigivyeqaiesgredwwkernesltldryvasilplvkpigmrllvepgrvlvgNAGILVSQVLYVKKGGSKK 311
                      888888888888888888888888888999999999999999999999999999999999999999999999999**************9999* PP

                      EEEES--TTTS-HHHHCTT-S-E.ESBTT-SCEEC.EEEEEEEE-SSSSTT-EEEEEEEEEE--TT-EEEESS-S CS
                      xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC  25 fvivdaGmndllrpalygsfhei.pvkeeeaekeeeeeeevdvvGptCesgDvlakdrelpelevGdllafedaG 98 
                      f+ivda+mndl+rpa+y+++h+i p++e    + +  +e vdvvGp+Ces+D++a dr l+++++Gd+la+ ++G
       CCG91575.1 312 FIIVDAAMNDLVRPAFYEAYHQIiPLRE----QVDPMMEVVDVVGPVCESSDCFAIDRPLSKVQAGDYLAIFSTG 382
                      ***********************88874....34456778********************************998 PP

>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.1e-08   6.6e-05       6     186 ..      37     229 ..      33     251 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.1e-08
                     HHHHHHHHHHHSCT.TSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTS.CSEEEEESC.STGGGHHHHHHT.TEEEEESS CS
  Ala_racemase_N   6 lrhNlrrlralagp.gaklmavvKanayghgavevaralaeggadgfgvatleEalelreagi.tapilvleg.fspeelaalaey.dltvtvds 96 
                     + +++ r+ +l++p ++ ++  vKa   ++ +++++   + g  +gf   +  E+ ++ +ag   +++   +   +++e++++++    + +v s
      CCG91575.1  37 IIDHYTRFEKLLEPlDHLICYAVKA-NSNLWILKLLA-NL-G--SGFDLVSGGELYRVLRAGGdPKKCTFAGVgKTRSEIEEALRVgIYSFIVES 126
                     5667788888886668889999999.66777766666.34.3..57888888888876666662555555555779*********7356899*** PP

                     HHHHHHHHHHHHH............TTS-EEEEEEBESSSS..SSSBSCHHHHHHHHHHHHTTTEEEEEEE-S-SSTTSTSHHHHHHHHHHHHHH CS
  Ala_racemase_N  97 leqlealaaaare............agkplrvhlkidtgmg..RlGftpeeleellealaalpglrleglmtHfasadepdeeteaqlarfeeal 177
                     +e+l  ++a+a++             + ++  h ki tg +  + G++ +++ +l+e++++l+g+ l+g+  H +s  ++  ++ + ++++  ++
      CCG91575.1 127 EEELLTIDAIAKKlsiqapvafrinPDVQAATHAKITTGSDvnKFGIALSQVSDLFEKCSKLDGVLLKGIQIHIGSQIQQVGPFLQAIQKVLPLV 221
                     ************************9999999*******97788*******************************998653356666777777777 PP

                     HHHHHTTGG CS
  Ala_racemase_N 178 eelekaglr 186
                     e+ ++ ++r
      CCG91575.1 222 EKARQ-KYR 229
                     76653.334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3149.33
//
Query:       CCG91576.1  [L=351]
Description: Ribonucleoside-diphosphate reductase subunit beta [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-84  282.2   3.6    5.6e-84  281.9   3.6    1.1  1  Ribonuc_red_sm  Ribonucleotide reductase, small chain
  ------ inclusion threshold ------
        0.1   13.0   1.0        2.2    8.7   0.4    2.3  2  Rubrerythrin    Rubrerythrin


Domain annotation for each model (and alignments):
>> Ribonuc_red_sm  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.9   3.6   6.3e-88   5.6e-84       2     279 .]      34     319 ..      33     319 .. 0.97

  Alignments for each domain:
  == domain 1  score: 281.9 bits;  conditional E-value: 6.3e-88
                     T-TTS-SSHHHHHHHHHHHCT---GGGS-GHHHHHHHHS.TS-HHHHHHHHHHHHHHHHHHHHHHHCHHHCHHCCBSSHHHHHHHHHHHHHHHHH CS
  Ribonuc_red_sm   2 fvlfpikypeiwelykkleanfWtpeevdlskDlkdwke.kLsedekefikkvlaflalldtivnenlverllsevqipearafygfqaamEniH 95 
                     ++l+p+ky+++we+y + +an W+p+ev+++ D++ wk+ +Ls++e+ +i+++l+f+a+ +++v++n+v+++++ v+++ear+++ +qa++E++H
      CCG91576.1  34 NQLMPLKYKWAWEHYLNGCANNWLPSEVPMQRDVELWKSnRLSDEERLVIMRNLGFFATGESLVGNNIVLAIFKFVTNAEARQYLLRQAYEEAVH 128
                     6899**********************************99******************************************************* PP

                     HHHHHHHHHHHT.-HHHHHHHHCHHHH-HHHHHHHHHHHHHHCTTTSC..........HHHHHHHHHHH.HHHHCCCHHHHHHHHHHHHTTSSHH CS
  Ribonuc_red_sm  96 aesYsllletlvkdekekdelfnaieenpalqkkaewikkwyeskkde..........ekfaerlvafa.llegilfysgFaailwlkkrgllpg 179
                     ++++ +++e+l+ de   +e+fn+++e++++ +k ++ + ++e+  +           +kf+++lv f+ ++egi+fysgF++il+++++++++g
      CCG91576.1 129 THAFLYIVESLGLDE---REVFNMYHEVNSISNKDQFEMALTEDILRSdfntesveniQKFVKNLVGFYvIMEGIFFYSGFVMILSFHRQNKMTG 220
                     ************554...56*********************99776335999*****************9************************* PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHCS.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.BTTCHHHHHHHHHHHHHHHHHHCTT---SS- CS
  Ribonuc_red_sm 180 laeiielilrDeglHtdfagllfkelkeen.elenkeleeeveelikeavelEkefitdalpvellglnkedvkqYieyvadrllmnlgyeklYn 273
                     ++e++++ilrDe++H++f+++l++ +keen e+++ ++++e+e++i++av lE+++++d+lp  +lgln++++k+Y+ey+adr+l+ +g+++ Y+
      CCG91576.1 221 IGEQFQYILRDETIHLNFGIDLINGIKEENpEIWTVDFQKEIEAMIDQAVLLEYAYAKDCLPRGILGLNSALFKDYVEYIADRRLERIGFKAKYG 315
                     *********************************************************************************************** PP

                     TT---C CS
  Ribonuc_red_sm 274 veeenP 279
                     +  +nP
      CCG91576.1 316 S--KNP 319
                     9..898 PP

>> Rubrerythrin  Rubrerythrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.4   0.00025       2.2      30      77 ..     113     161 ..     104     188 .. 0.83
   2 ?    2.6   0.0     0.019   1.7e+02      26      59 ..     216     249 ..     203     277 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00025
                   HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHH..B.SSBBS-------T CS
  Rubrerythrin  30 qiaelFeelAeeEreHakilnklleklepele.levkekvreyaeakpk 77 
                   + ++++++ A eE+ H + +  ++e+l ++++ ++   + ++    k +
    CCG91576.1 113 EARQYLLRQAYEEAVHTHAFLYIVESLGLDEReVFNMYHEVNSISNKDQ 161
                   667889999**********************977777777766665555 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.019
                   TT-HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTT CS
  Rubrerythrin  26 egypqiaelFeelAeeEreHakilnklleklepe 59 
                   ++++ i e F+++ ++E  H ++ ++l++ +++e
    CCG91576.1 216 NKMTGIGEQFQYILRDETIHLNFGIDLINGIKEE 249
                   4577788888888888888888888777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2709.13
//
Query:       CCG91579.1  [L=50]
Description: hypothetical protein MFUM_150001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.056   13.5   0.0      0.069   13.2   0.0    1.1  1  TetR_C_34  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_34  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.9e-06     0.069       3      34 ..      18      48 ..      17      50 .] 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.9e-06
   TetR_C_34  3 aaalaetlaarpllcdLlsllasvLEhnvsve 34
                ++++++t++  ++lc+L+++   +LE n++  
  CCG91579.1 18 VSVVSSTIEHAKRLCELVGA-GNILETNITGS 48
                6899***************7.789*****965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 417.16
//
Query:       CCG91580.1  [L=137]
Description: Hemoglobin-like flavoprotein fused to Roadblock/LC7 domain (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-12   47.9   0.0    4.8e-12   46.4   0.0    1.7  1  Globin       Globin
  ------ inclusion threshold ------
      0.035   14.0   0.1      0.048   13.6   0.1    1.4  1  Protoglobin  Protoglobin
      0.051   14.1   0.2       0.19   12.3   0.1    1.8  2  Arc_PepC_II  Archaeal Peptidase A24 C-terminus Type II


Domain annotation for each model (and alignments):
>> Globin  Globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0     8e-16   4.8e-12       2     109 ..       6      98 ..       5      99 .. 0.95

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 8e-16
                 HHHHHHHHHHHHTHHHHHHHHHHHHHHHHSGGGGGGSTTTTTTT-HHHHCTSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCSTT--HH CS
      Globin   2 kalvkaswekvkanaeelgaeilkrlFkaypdtkklFkkfgdlssaedlksspkfkahakkvlaalgeavknldndealkaalkklaarHaergkvdpa 100
                 ++l+++sw  v ++a+e g+ ++krlF++ p++++lFk   +            +++++kk+++ ++ +v nl++ +++ + +k+la+rH+++g v+ +
  CCG91580.1   6 IKLIQKSWLYVMDKADEAGRLFYKRLFEVEPNVRSLFK---E-----------NIEKQGKKLIDVINWIVLNLQDIDTVFGGAKELARRHVRYG-VQVE 89 
                 689***********************************...3...........489*****************9999*****************.**** PP

                 HHHHHHHHH CS
      Globin 101 nFklfgeal 109
                 +++l+g+ l
  CCG91580.1  90 HYPLVGHTL 98 
                 *****9987 PP

>> Protoglobin  Protoglobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1     8e-06     0.048      14     104 ..       1      91 [.       1     129 [. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8e-06
                  -SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTS.HHHHHHHCH..HCHHHHHHHHHHHHHHHCCCSSCCHHHHHHHHHHHHHHCHCT--HHHH CS
  Protoglobin  14 lteedlaaLralapliealipavvdafYekllsf.petarifet..ssqierlkdflksyllklfsgpfdsayveyldkvGkmhtrlgleprwy 104
                  +t+e ++++++ + ++ +  ++  + fY++l +  p+ +  f++  ++q ++l d  ++  l+l   +  +  +   ++++++h+r g+++ +y
   CCG91580.1   1 MTQERIKLIQKSWLYVMDKADEAGRLFYKRLFEVePNVRSLFKEniEKQGKKLIDVINWIVLNL---QDIDTVFGGAKELARRHVRYGVQVEHY 91 
                  68999****************************9788888888888888888888888888888...6666788999****************9 PP

>> Arc_PepC_II  Archaeal Peptidase A24 C-terminus Type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.2e-05      0.19      14      65 ..       6      56 ..       2      65 .. 0.84
   2 ?   -0.4   0.0      0.29   1.7e+03      47      56 ..     100     116 ..      68     132 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.2e-05
  Arc_PepC_II 14 vkellkkflflleefeekdgkikrkfisvekeldeelrkelkkykkkgliee 65
                 +k ++k++l+++++ +e +   +++ ++ve ++++ ++++++k  kk  i+ 
   CCG91580.1  6 IKLIQKSWLYVMDKADEAGRLFYKRLFEVEPNVRSLFKENIEKQGKKL-IDV 56
                 67789************9999999*****************9987764.555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.29
  Arc_PepC_II  47 d.......eelrkelkk 56 
                          +e++kel++
   CCG91580.1 100 WtlgniigKEWTKELEQ 116
                  03333333666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1033.52
//
Query:       CCG91581.1  [L=319]
Description: Ammonium transporter (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-93  313.6  27.9    1.8e-93  313.4  27.9    1.0  1  Ammonium_transp  Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> Ammonium_transp  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.4  27.9     1e-97   1.8e-93      93     399 .]       1     317 [.       1     317 [. 0.96

  Alignments for each domain:
  == domain 1  score: 313.4 bits;  conditional E-value: 1e-97
                      HHHHHHHHHHHHHCTTTB-HHHHHHHHHHHHHHTHHHHHHHHHS.SSHHHHTT--.......-SSSTTTTHHHHHHHHHHHHHHHS-STTTTGT CS
  Ammonium_transp  93 afaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvl......iDfAgstvVHlvggvagLaaalvlgkregrfeg 180
                      +fa+++ +++ g++aer+k sa+l+f++l++ +vy+p ah+vwg+ g+++ + ++      iDfAg+tvVH+++g+++L++al+lgkr+g +  
       CCG91581.1   1 MFAVITPALIMGGIAERMKYSAVLIFITLWMLFVYFPQAHMVWGASGMMNGVFNSgakipaIDFAGGTVVHMTSGWSALILALLLGKRKGFG-- 92 
                      89*******************************************99988888888888*******************************99.. PP

                      TTSS--GSBHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHH.HHHHHHHHHHHHHHHHHHHHHHHCSS-BHHHHHHHHHHHHHHHTTTTTTS-H CS
  Ammonium_transp 181 keeaikghnlpfavlGtllLwfgWfgFNaGsaltankrararaavtTllAaaagaltallisrlkegkinvlglanGilAGlVAiTaacavvep 274
                       +e i + n+++ ++G+++Lw+gW+gFNaGsa +a+++a++ a++tT+lA+a++ lt+ +++++ +g ++vlg   G++AGlVAiT+ac++v+ 
       CCG91581.1  93 -TEPIIPNNMTYCMVGAAILWIGWYGFNAGSAVAADGIAAN-AFMTTTLATAVASLTWPMLEYTLKGTPTVLGFSTGAVAGLVAITPACGFVNS 184
                      .8***************************************.**************************************************** PP

                      HHHHHHHHHHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHHHHHTSHHHC.......SSHSSTTGGGT-C.HHHHHHHHHHHHHHHH CS
  Ammonium_transp 275 wgAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv.......askisggllsgeg.kqlvvqligilvilay 360
                       gA+iiGl Ag++ +++++++k  lk+dD+ld+++vHgvgG++G++++g+f+++ v+       ++k++g  +s ++  + ++ql +il+++++
       CCG91581.1 185 TGAVIIGLAAGIIPYFACSVIKPLLKYDDALDAFGVHGVGGMLGAFLTGVFVDPAVNanllseaVAKKNGLAASVTSgTLWIAQLKAILITIVV 278
                      *******************************************************999999996555555555555578899************ PP

                      HHHHHHHHHHHHHHHTTSB--HHHHHHSHHHHHHSSSSB CS
  Ammonium_transp 361 afvvtlilllllklllgLrvseeeeevglDvaehgetay 399
                      a++ ++i+++++k+l+gLrv+ee e++glD++ehge++y
       CCG91581.1 279 ATLASVIIGFVVKALVGLRVDEEVETQGLDISEHGEQGY 317
                      ************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2403.85
//
Query:       CCG91582.1  [L=92]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-29   99.8   0.0    8.3e-29   99.6   0.0    1.0  1  DUF4242   Protein of unknown function (DUF4242)


Domain annotation for each model (and alignments):
>> DUF4242  Protein of unknown function (DUF4242)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.0   4.6e-33   8.3e-29       1      76 []       4      80 ..       4      80 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 4.6e-33
                EEEEE---TT..--HHHHHHHHHHHHHHHGG..GT-EEEEEEEETTTTEEEEEEE-S-HHHHHHHHHHHT---SEEEE- CS
     DUF4242  1 Ymierdlpgg..itaeelaaaaakslavlael.egvqwlrsyvtedkgkvfClyeApdeeavrehaeraGlpadrIieV 76
                Y+ier+++g+  ++ eela+++aks+++l+++ +++qw++syvt dk  ++C+y+Apde+++reha ++G+pa+rI e+
  CCG91582.1  4 YVIEREISGAgnLSNEELAKISAKSCSILDKMgPQIQWIESYVTGDK--IYCIYIAPDEKTIREHAAQGGFPANRIAEI 80
                9**********************************************..***************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 653.64
//
Query:       CCG91583.1  [L=109]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 818.05
//
Query:       CCG91584.1  [L=176]
Description: Rhodanese-related sulfurtransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-06   27.8   0.0    5.6e-06   26.8   0.0    1.6  2  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.55   9.9e+03      39      67 ..      21      49 ..      15      51 .. 0.71
   2 !   26.8   0.0   3.1e-10   5.6e-06       4      74 ..      61     127 ..      58     155 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.55
   Rhodanese 39 dtlsrakkseapllelpeellelgidnkk 67
                 +++r++ s+ ++ +l +e +e  i++++
  CCG91584.1 21 IPFGRGQNSKIDFTALDKESEEIEINPQD 49
                56677777788888888887777676665 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 3.1e-10
   Rhodanese   4 elkellekgkva....llDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellel..gidnkktvvvycd 74 
                 el+e l k + +    ++ v ++  Y+++hIpg++ v            ++++e +++l+++  g+++++++v+yc 
  CCG91584.1  61 ELVEALRKSDEKkdlvIFHVGFSFLYKASHIPGSIYV----------GSGKDKEGIASLEKKvfGLSKNQQIVLYCG 127
                 5555554433334556899999999************..........7777777777777778888**********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1323.96
//
Query:       CCG91585.1  [L=147]
Description: Phospholipid-binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-37  126.9   0.0    7.2e-37  126.7   0.0    1.0  1  PBP       Phosphatidylethanolamine-binding protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.0     4e-41   7.2e-37       7     132 .]      21     143 ..       9     143 .. 0.94

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 4e-41
                 CSBGGS-EEEEES--TTSSEEEEEEEETTSCCTCTTEEEEEEEEEETTSSEE-TTC.....EE-B-TTSSCCCCS---B--STTS..EEEEEEEEEESS CS
         PBP   7 egentsPplswsdvpegtksyalvviDpDapkvsetflHwvvtnipasvtslpega.....vqgknslgeesesgYlgpcPpkgdgkHrYvfllyaldv 100
                 + en sP+l+++dvp++tks+alv+ DpDap +++ ++Hwv++nip++v+++++g+     v g+n++g+   + Y+gp+Pp g   HrY+f  yald+
  CCG91585.1  21 GAENKSPELKLEDVPQNTKSLALVMDDPDAP-RGT-WVHWVLWNIPPDVHTIKKGQtpdgaVPGRNDFGN---TRYDGPAPPSGV--HRYYFRAYALDQ 112
                 778999*************************.666.*****************99999999*********...************..**********99 PP

                 SG--BGSS-SHHHHHHHHCTTEEEEEEEEEEE CS
         PBP 101 ealdlkagftraelgaaiaghvlakatlagnY 132
                   l+l++g t+++l ++i+ghvla+a+l+g++
  CCG91585.1 113 I-LNLPKGSTKSDLLKKIHGHVLASAELMGTF 143
                 8.589***999*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       201  (0.0112109); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1102.28
//
Query:       CCG91586.1  [L=420]
Description: Glucose/sorbosone dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-10   40.5   0.0    1.3e-07   31.2   0.0    3.4  2  GSDH        Glucose / Sorbosone dehydrogenase
    0.00076   19.4   0.1       0.24   11.5   0.0    4.2  5  NHL         NHL repeat
  ------ inclusion threshold ------
      0.023   14.3   0.0      0.043   13.4   0.0    1.4  1  SGL         SMP-30/Gluconolactonase/LRE-like region
      0.039   14.1   0.0      0.079   13.1   0.0    1.4  1  MGDG_synth  Monogalactosyldiacylglycerol (MGDG) synthase
      0.077   12.2   0.0        5.1    6.2   0.0    2.2  2  Lactonase   Lactonase, 7-bladed beta-propeller


Domain annotation for each model (and alignments):
>> GSDH  Glucose / Sorbosone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   3.7e-11   1.3e-07     112     262 ..     178     326 ..      82     346 .. 0.65
   2 ?   -1.4   0.0      0.31   1.1e+03       4      18 ..     392     406 ..     390     412 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 3.7e-11
                 -------EEE-TTS.-EEEE---TT-GGGGG-TT-SSSEEEEE-TTSSB-TT-TTTT-TTS-TTEEEE--SCE---EE-TTT--EEEE..EE--SSS.. CS
        GSDH 112 gahfGsrlafgpdg.tLfvtvGdrskreeaqdlsselGkilrlnkdGsvpadnpfvgkagakpeiwsyGhRnpqGlaldpdtgeLwes..EhGprgg.. 205
                 g+h +  la++pdg  LfvtvG + + +e      +  +i+ l             + +++++ei++ G Rnp Gla+ p++ +L+ +  E    g+  
  CCG91586.1 178 GNHWSRTLALSPDGqVLFVTVGSKTNVDEDPP---PRASIVTL-------------KIKSNSSEIYARGLRNPVGLAFYPHSSDLYVTvnERDWLGDdl 260
                 55555555566555555555555544332222...22233333.............33355679*********************97522555555577 PP

                 ..EEEEEE-TT-B--TTT-S......S-............-S-TTS---SEEETT---EEEEEEE. CS
        GSDH 206 ..DelnlieaGknYGWplvsygeeYsgk....kiges...etreglekpvlvwtpsiapsglafyt 262
                   D l ++e+G+ YGWp    + e+ +     +i+ +   e  +++++p + +++  a  glaf  
  CCG91586.1 261 vpDYLTRVEKGAFYGWPYCYLSPEFIDPrwknRIEGTkakELIQSTKTPDVLFQSHSAALGLAFPP 326
                 78999*************999888875434434443311233345666777777777777777655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.31
                 EEEEEE-TTS-EEEE CS
        GSDH   4 PwslaflpdgrlLvt 18 
                 P +l flpdg+lL++
  CCG91586.1 392 PCGLLFLPDGSLLLA 406
                 88999*****99976 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   6.8e-05      0.24       2      25 ..      83     106 ..      82     106 .. 0.90
   2 ?   -0.3   0.0      0.38   1.3e+03       9      20 ..     138     149 ..     136     151 .. 0.84
   3 ?   -2.1   0.0       1.4   4.9e+03       7      16 ..     185     194 ..     184     194 .. 0.87
   4 ?   -2.7   0.0       2.1   7.4e+03       1       8 [.     231     238 ..     231     239 .. 0.85
   5 ?    1.3   0.0      0.12   4.1e+02       9      22 ..     397     411 ..     391     411 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.8e-05
                 SSEEEEEEETTTEEEEEECCCTEE CS
         NHL   2 nyPhGvavdsnGdiyVaDsenhrv 25 
                  +P+ +a++++Gd++Va+s+++r+
  CCG91586.1  83 DNPRWLALTPTGDVLVAESYSSRI 106
                 678889****************98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.38
                 EETTTEEEEEEC CS
         NHL   9 vdsnGdiyVaDs 20 
                 v+s + +yVa++
  CCG91586.1 138 VFSKDSFYVANT 149
                 56999*****97 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.4
                 EEEETTTEEE CS
         NHL   7 vavdsnGdiy 16 
                 +a++++G+++
  CCG91586.1 185 LALSPDGQVL 194
                 7999***996 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 2.1
                 BSSEEEEE CS
         NHL   1 fnyPhGva 8  
                 +++P G+a
  CCG91586.1 231 LRNPVGLA 238
                 689***99 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.12
                 EETTTEEEEEE.CCC CS
         NHL   9 vdsnGdiyVaD.sen 22 
                  +++G ++ aD  +n
  CCG91586.1 397 FLPDGSLLLADdGNN 411
                 459********5444 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.2e-05     0.043      11     151 ..      93     249 ..      84     255 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
         SGL  11 egaLlwvDilgqrihrldpatgketv......ldtpe....svGaiaprkdgrlvvasksglalldlas......geletladeeedekpllrfNDgvv 93 
                 +g +l  + + +ri+ l++++++ +v      +d+++    + G+++   ++ ++va+++g++++ +++      g+ +++++ + +   ++ +  ++ 
  CCG91586.1  93 TGDVLVAESYSSRIMLLEDNDKDGVVdkisifADISNglhlPFGMVFS--KDSFYVANTDGVLVFPYKEgqkkleGRGRKILSLP-GS-GNHWSRTLAL 187
                 567778888999999999999999987777766666677778888888..89*************76663333335777888875.44.6888888*** PP

         SGL  94 dpdGrlwfGtmgdeeakgeev...galyrldpd.gklervlddltipNGlawspdgktlYla 151
                 +pdG++ f t g +++ +e++   ++++ l+ + ++ e  +++l  p Gla+ p ++ lY++
  CCG91586.1 188 SPDGQVLFVTVGSKTNVDEDPpprASIVTLKIKsNSSEIYARGLRNPVGLAFYPHSSDLYVT 249
                 *****88888888887777788999******9989999999*******************86 PP

>> MGDG_synth  Monogalactosyldiacylglycerol (MGDG) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.2e-05     0.079      33      99 ..     254     318 ..     242     326 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.2e-05
                 ---------------------------------------------HHHHHHHHHHH--SEEEE-STT CS
  MGDG_synth  33 pfllkavlksYlflvkvsalyrllyygteekiqkksilaklatflakelaalleeeqPDiiisthpl 99 
                  +l   ++  Yl  v  +a+y+  y++ ++++++ +  ++++   akel++    + PD+++++h +
  CCG91586.1 254 DWLGDDLVPDYLTRVEKGAFYGWPYCYLSPEFIDPRWKNRIEGTKAKELIQ--STKTPDVLFQSHSA 318
                 57777788889999999**********************************..999*********76 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0014       5.1     288     331 ..      80     122 ..      74     134 .. 0.82
   2 ?    3.8   0.0    0.0078        28     164     208 ..     149     197 ..     138     230 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0014
                 -SSS.--EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEES CS
   Lactonase 288 tegkfPRdfaldpsgklllvanqksdnvtvferdaetGkLtelg 331
                    ++PR +al+p+g++l va+  s+++ ++e + + G +++++
  CCG91586.1  80 KDLDNPRWLALTPTGDVL-VAESYSSRIMLLEDNDKDGVVDKIS 122
                 55689**********965.78999999*9999999999988775 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0078
                 TTEEEEEEE.-TTS-EEE.EEEEE-STT--...EEEEEE-TTSSEEEEE CS
   Lactonase 164 tDrvrvykldkatgklte.pasvklppgsG...PRHlaFhpdgkiaYvv 208
                 tD v v+ ++++++kl+   +++   pgsG    R la++pdg++++v+
  CCG91586.1 149 TDGVLVFPYKEGQKKLEGrGRKILSLPGSGnhwSRTLALSPDGQVLFVT 197
                 6777777777777777665555666667774444777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3147.41
//
Query:       CCG91587.1  [L=60]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   15.8   0.1      0.013   15.5   0.1    1.1  1  ETRAMP    Malarial early transcribed membrane protein (ETRAMP
      0.016   15.4   0.1      0.016   15.4   0.1    1.0  1  DUF2127   Predicted membrane protein (DUF2127)
      0.027   14.0   0.1      0.034   13.7   0.1    1.0  1  SieB      Super-infection exclusion protein B


Domain annotation for each model (and alignments):
>> ETRAMP  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.1   2.2e-06     0.013       1      54 [.       1      53 [.       1      55 [. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.2e-06
      ETRAMP  1 MKvtkvllffafLlavnlltpeslcdevnkkkekakkaikkiddkiekkkkkkK 54
                MK+ k+ll+++ ++++ +++  ++  e ++ + +++kai++  + ++k  ++ K
  CCG91587.1  1 MKIVKALLVVLAFILLFFAPHLTHLFERTQRQVVENKAIENGLERMQKE-QQAK 53
                ******666666666667777777788888889*************999.5555 PP

>> DUF2127  Predicted membrane protein (DUF2127)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.1   2.7e-06     0.016       8      51 ..       1      38 [.       1      55 [. 0.69

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.7e-06
     DUF2127  8 lklvkglllllaglallfllssrdlaalaerlarelhldpessl 51
                +k+vk+ll++la ++l+f+ +   l +l er++r++ ++     
  CCG91587.1  1 MKIVKALLVVLAFILLFFAPH---LTHLFERTQRQVVENK---A 38
                589999988776555555555...8899999999997654...3 PP

>> SieB  Super-infection exclusion protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   5.6e-06     0.034      35      84 ..       3      52 ..       2      55 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.6e-06
        SieB 35 iglvflisiayllaqvvskllaeikekikkkreqkkvekklknLteeeka 84
                i+ ++l+++a++l  ++  l +++ + + +  e+k++e+ l+++ +e++a
  CCG91587.1  3 IVKALLVVLAFILLFFAPHLTHLFERTQRQVVENKAIENGLERMQKEQQA 52
                56689*******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1366  (0.0761894); expected 358.6 (0.02)
Passed bias filter:                      921  (0.0513693); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 431.18
//
Query:       CCG91588.1  [L=260]
Description: putative ROK family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-09   38.1   0.0    2.8e-09   36.9   0.0    1.6  2  ROK          ROK family
  ------ inclusion threshold ------
      0.027   13.5   0.2        6.5    5.6   0.0    2.2  2  Glucokinase  Glucokinase


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   3.2e-13   2.8e-09       4     144 ..      35     157 ..      32     159 .. 0.85
   2 ?   -2.2   0.0      0.24   2.2e+03     224     224 ..     196     196 ..     164     219 .. 0.48

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 3.2e-13
                 EEE-SSEEEEEEEETTS-EEEEEEEEEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGC..GCCCCTTHHHHHHHHHTS-E CS
         ROK   4 idiGgtkialalvdeegeilarekvetptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpn..itwenfdlvekleerlnvpv 100
                 idiGg+++++   +    + + +k++  ++ t++ l++a++  v ++  k     +++ig+pG++ ++++ i ++++  ++w+n+d+     +++++p+
  CCG91588.1  35 IDIGGHNVKVYCSE----VDDVKKIPSGKDFTPKKLIEAVQRDVLKK--KY---SKIAIGFPGPV-KDNKPIEEPKHlgLGWKNYDFT----AAFGLPC 119
                 89999999887654....88888888899999999988888755554..22...48*********.9999999999988899***986....679**** PP

                 EEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEE CS
         ROK 101 evenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingkl 144
                  v nD+   al+ ++        +++++ +gtG+G + i+ g l
  CCG91588.1 120 KVINDAAMQALGSYW------GGTMLFLGLGTGLGSALIVKGTL 157
                 ***************......5689**************99976 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.24
                 H CS
         ROK 224 k 224
                 k
  CCG91588.1 196 K 196
                 2 PP

>> Glucokinase  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0   0.00073       6.5       1     107 [.      33     131 ..      33     135 .. 0.67
   2 ?    5.3   1.6   0.00096       8.6     127     148 ..     135     156 ..     108     164 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.00073
  Glucokinase   1 LagDiGGTkarlalveaeeeelelleiekyasadyasleealqaflaeaeaevkrpksavlAvAgpvegdevel....tNlpWviseeelakelglea 94 
                  L+ DiGG ++++ + e+++ +      +  +++d+ + +++++a+ ++     k+ ++ +++  gpv++++         l W  ++ ++ +++gl+ 
   CCG91588.1  33 LVIDIGGHNVKVYCSEVDDVK------KIPSGKDF-TPKKLIEAVQRD--VLKKKYSKIAIGFPGPVKDNKPIEepkhLGLGW--KNYDFTAAFGLP- 118
                  678999999988777666655......44556666.467777777773..4445556799*******9987543110134445..455777777776. PP

  Glucokinase  95 veliNDfeavaya 107
                  +++iND + +a++
   CCG91588.1 119 CKVINDAAMQALG 131
                  7899998888876 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.00096
  Glucokinase 127 eapiavlGaGTGLGvallipek 148
                   ++++ lG GTGLG al+++ +
   CCG91588.1 135 GGTMLFLGLGTGLGSALIVKGT 156
                  567889***********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 1685.87
//
Query:       CCG91589.1  [L=350]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-07   31.2  14.6    4.5e-07   30.2  14.6    1.6  1  OMP_b-brl        Outer membrane protein beta-barrel domain
     0.0017   18.0   5.5     0.0038   16.9   5.5    1.5  1  Autotransporter  Autotransporter beta-domain
  ------ inclusion threshold ------
        1.4    7.2   3.8        1.9    6.8   3.8    1.1  1  Menin            Menin


Domain annotation for each model (and alignments):
>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2  14.6   7.5e-11   4.5e-07      37     167 ..     160     323 ..      68     344 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 7.5e-11
   OMP_b-brl  37 gv.gsdsgfgfgvgagyefndn...........vgvegglsysgdkdysgs...........gktdikinllsvpvnagya.......fnlsds.vlpy 104
                 g  ++d+ + +g+++gy+f+++            + + ++ y g++++s++           +    +++ ++ ++n+g+        f  +++ + py
  CCG91589.1 160 GKtHGDTAGVGGIQVGYNFSSYkldshgdywlqPAAQFEAYYIGQENISSTlvggvagtpmtN----TPYGFNSQLNMGIFvfdgvirFV-NPTkIVPY 253
                 333556678889999999977333333444333344444445777777777888777643330....34444444444443222221154.444599** PP

   OMP_b-brl 105 ggaGlgytkvevdvsgng..........asdsdtdfglglgaGveyaladnwslkaeYrytdlksdadndlkn 167
                 +g+G+g ++++ ++ ++            s+s+ +f  ++ aGv+y+++d+w+  +eY++ ++k    +++++
  CCG91589.1 254 IGGGIGGAYLDSSGTNFIapgginylsgHSYSQGAFVGQGLAGVQYNFTDHWTAFIEYKILWIKE---TEFSY 323
                 ******9999999888889*******999********************************9965...33333 PP

>> Autotransporter  Autotransporter beta-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   5.5   6.3e-07    0.0038     109     254 ..     158     311 ..     154     312 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.3e-07
                      EEEEEEEEEEEE.EEEEEE-CEC.....CGCEEEEEEEEEEEEEEEEEEEE-SS..TTSEEEEEEEEEEEEEEEEEEEEEECCCTT........ CS
  Autotransporter 109 akgdydgnglsa.sleaGydfkl.....sggwtlePqaqltysrlkldgftesg.gaaaltvdsqdadsltgrlGlrlsydfdlgg........ 187
                      a g+++g++ ++ ++++Gy+f+       g+++l+P aq++  ++++++ + +  g++a t     ++++   +  +l + + + +        
       CCG91589.1 158 AGGKTHGDTAGVgGIQVGYNFSSykldsHGDYWLQPAAQFEAYYIGQENISSTLvGGVAGT----PMTNTPYGFNSQLNMGIFVFDgvirfvnp 247
                      789999999997258***************************************6444444....5555555555555555554445666688* PP

                      ECEEEEEEEEEEEECEE---EEEEEETTECCEEEE-------BCEEEEEEEEEEEEECTTEEEEEEE CS
  Autotransporter 188 gkltpylraawqhefgddgktstasfagastagsftvfgaelgrdslelgaGleaqlsdnlslylny 254
                      +k+ py+  ++  +++d++ t + +   +++ ++    + ++g   ++  aG++++++d+++ +++y
       CCG91589.1 248 TKIVPYIGGGIGGAYLDSSGTNFIA---PGGINYLSGHSYSQGAFVGQGLAGVQYNFTDHWTAFIEY 311
                      *************************...6777777778889999999999**************999 PP

>> Menin  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.8   0.00031       1.9     518     590 ..      38     115 ..      29     131 .. 0.36

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00031
       Menin 518 ggdqplaeqkqkkageeserreann...nnnsksnsekeadkkasttsnggeass.tpsseseaavespse..hkeakl 590
                 g + p+ +++q  +++e++++e n    +++s ++ ++ a + +s t+  +e ++ ++s++ ++a ++ps+   +e k 
  CCG91589.1  38 GQEIPVVDTNQPVTTQENQTEE-NAtpiKDASSASLNNSASTVSSDTQARAEGDAeNTSPQQDTASQAPSQkeGNEIKN 115
                 5555555555333333333333.11000122222222333333333333223333223333334444444422222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.49
# Mc/sec: 2169.05
//
Query:       CCG91590.1  [L=49]
Description: hypothetical protein MFUM_170003 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 352.38
//
Query:       CCG91591.1  [L=561]
Description: Heme/copper-type cytochrome oxidase, subunit 1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-82  276.1  51.0    4.9e-82  276.1  51.0    2.0  2  COX1      Cytochrome C and Quinol oxidase polypeptide I


Domain annotation for each model (and alignments):
>> COX1  Cytochrome C and Quinol oxidase polypeptide I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.1  51.0   2.7e-86   4.9e-82       3     431 ..      28     476 ..      26     477 .. 0.90
   2 !    2.5   1.3    0.0029        52     108     176 ..     458     548 ..     454     555 .. 0.60

  Alignments for each domain:
  == domain 1  score: 276.1 bits;  conditional E-value: 2.7e-86
                 HHHHHHHHHHHHHHHHHHHHHHHHHCT.......CT-HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSS-S-HHHHHHHHHHHHHHHHHHH CS
        COX1   3 gllylilalvlllvggllgllirlqla.......fpdletynqlrtlHgnlmiflfatpfilgfgnylvplllgardlafprlnalsfwlvvlgvvlll 94 
                 +l+ +++++++l++g++ g ++ l++a       +p ++ty++ +t+Hg+l +f+f+++ + g+  + + + lg r l ++ l alsf+l+vlg+v++ 
  CCG91591.1  28 ILWSILFGFAALAFGVFQGFVQGLNYAgislftfLPGMKTYYEGLTAHGVLNAFIFTFAEANGWLSLTTARALG-RNLNSR-LLALSFVLLVLGTVFAG 124
                 57888999999999999999999999644443324789**********************99999999999995.445555.999************** PP

                 HHHH.CSS-STTTTTTTC.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCGS-HHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHCT-SSSC CS
        COX1  95 lsll.gaattgwteYaplsevdlwllglllvvvssllgainfivtilkrrapgmtvaklplfvwavlatailillalpvlalalllllldrslgkffsp 192
                 ++++ g+a++++t+Y+pl +++++++g++l+vvs+++ ++  + +++++r+++   +++pl+++  ++t+i++ ++ ++ a++ l+lll++sl +++  
  CCG91591.1 125 IPIFlGKASVLYTFYPPLRAHWAFYFGIALAVVSTWIISAAQLWALAEWRKEHK-GERIPLMAYVSIMTYIMWDISSLGAAIEDLFLLLPWSL-NLLPG 221
                 **999*********************************************8876.999**********************************9.46666 PP

                 E-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHCCCCGGGGTTTS.SS-HHHHHHHHHHHHHTHHHHHH...... CS
        COX1 193 gdplldqhlfWffgHpeVyililpalgivyyilpkfagrplfsyklsvlafililflsflvwaHHlftt.glpewlkalgsvfslliavPsgl...... 284
                  dpll ++lfW++gH +Vy+++lpa++ +y ++p++++ +lfs++l+++afi++++l  +v++HH++t+ g+ +++k+   ++++ ia Ps+l      
  CCG91591.1 222 SDPLLSRVLFWYTGHQIVYYWLLPAYVSWYIFIPRMVNGKLFSDSLARIAFIMFVVLV-PVGFHHQYTDpGVGNYFKIAVLILTFGIAFPSLLtafsim 319
                 *****************************************************99886.5*********************************999999 PP

                 .............CCCHHHHCCTTS-CHCHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH.SB CS
        COX1 285 .............kvfnwlatlwrgsirfktpmlfflgfavlfiigGltGvllalpsvnyvvhntywvvaHfHlvllgavvfllfaaiyyllpklt.gr 369
                              ++++w+++l ++++ +++ +l    +++ f+ gG+tG+++a++++n+++hnt +v++HfHl+l  av++ +f++ y+l+p lt ++
  CCG91591.1 320 yaleiggranggkGILGWFLKLPWSNPAVSAQVL----AMIAFLPGGITGIMNASYNMNLLIHNTTFVPGHFHLTLGSAVTLSYFGIAYWLIPYLTrRK 414
                 9999999999999999999999333444444444....66667*****************************************************555 PP

                 --HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHBSSSS....T--SCCCCHHHCHHHHHHHHHHHH CS
        COX1 370 mlserlaklhfwllfiGlvlmflpmhilGllgmprraa....dyksfletvpelqplnvlrtiggv 431
                 +  e++ak++ w++f+G+++++   +  G+lgmprr+a    +y    e +p ++    l  igg+
  CCG91591.1 415 LALEKIAKWQPWVYFLGILIFARGEISGGILGMPRRTAlaiiNY----EPLPGWKLAGALTGIGGT 476
                 66************************************543334....456777777777777665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.0029
                 TTTC.....SHHHHHHHHHHHHHHHHHHHHHHHHHHHH..................HHHHTT-CC.......GS-HHHHHHHHHHHHHHHHCHHHHHH CS
        COX1 108 Yapls....evdlwllglllvvvssllgainfivtilk..................rrapgmtva.......klplfvwavlatailillalpvlala 176
                 Y pl     ++ l  +g +++ ++ +l+++ ++ t+++                          a         +l  w +l++++++l++ p+l   
  CCG91591.1 458 YEPLPgwklAGALTGIGGTIMFIGCVLFFLVIFFTLIQgkkmestgdlpftetylgA-------ApsgwqliLDKLSYWVLLSFILIALVYGPFLLTH 548
                 666666666667777777888888888888888888885555554444444444332.......0333333355666777777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3617.36
//
Query:       CCG91592.1  [L=160]
Description: Heme/copper-type cytochrome oxidase, subunit 2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-08   32.2   0.0    1.1e-07   31.7   0.0    1.3  1  COX2          Cytochrome C oxidase subunit II, periplasmic do
     0.0052   16.9   0.0     0.0083   16.2   0.0    1.4  1  Cupredoxin_1  Cupredoxin-like domain


Domain annotation for each model (and alignments):
>> COX2  Cytochrome C oxidase subunit II, periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.2e-11   1.1e-07      48     115 ..      88     155 ..      72     160 .] 0.93

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.2e-11
        COX2  48 vvlpvetkirllvtaedvlhsfavpslgvkvdavpGrlnqvsllidreGvfyGqcselcGvnhssmpi 115
                 + lp+ + + +  t+ d+ h f +p   v +   pG+++ +    d+ Gv+   c e cG++h  m  
  CCG91592.1  88 IELPIGADVTFYGTSLDIDHGFFIPNTDVNMMLLPGQVSILRHKFDKAGVYRIICHEYCGTLHHLMTG 155
                 669*************************************************************9964 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   9.2e-07    0.0083      20     104 .]      71     159 ..      49     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.2e-07
  Cupredoxin_1  20 ektveitvkdggfePskievkagekvklkiknkdktpeefesedlgeekvlapgktttitiaplkpGeYeftcd.....mhmd.akGkliV 104
                   + +v++  +   f+P +ie++ g  v++  +  d   + f +++ +++  l pg+ + +  + +k+G Y+++c      +h   + G+++V
    CCG91592.1  71 KYKVVVLGQAWMFNPPSIELPIGADVTFYGTSLDI-DHGFFIPNTDVNMMLLPGQVSILRHKFDKAGVYRIICHeycgtLH-HlMTGTITV 159
                   555666666678************99888877775.599**********************************88555433.448899988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1166.95
//
Query:       CCG91593.1  [L=51]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 405.24
//
Query:       CCG91594.1  [L=84]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.026   14.6   0.5      0.031   14.3   0.5    1.1  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
       0.11   12.5   1.0       0.36   10.8   0.2    1.9  2  DUF1467          Protein of unknown function (DUF1467)


Domain annotation for each model (and alignments):
>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.5   3.5e-06     0.031      41      87 ..      17      74 ..       9      81 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.5e-06
  Phage_holin_3_6 41 gaagvlallalllllvala......lala.a....lwlaalivaavllvlagvlalvg 87
                     g++g+++++ ++l l+ ++      ++l+ +      l ali  +v++v+ag + +  
       CCG91594.1 17 GLTGIVLFYFFMLSLISFLgwgslnIFLEgMgkplDGLYALIWLVVFFVVAGFFSRQL 74
                     445555555555555544333444433333356689******99*******9987655 PP

>> DUF1467  Protein of unknown function (DUF1467)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.078     7e+02      56      72 ..      15      31 ..       6      42 .. 0.61
   2 ?   10.8   0.2   4.1e-05      0.36       9      24 ..      54      69 ..      52      77 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.078
     DUF1467 56 itTivaavvfalvllii 72
                 t +  +v+f +++l +
  CCG91594.1 15 QTGLTGIVLFYFFMLSL 31
                55555566666665543 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 4.1e-05
     DUF1467  9 iYfviWwvvlFavLPf 24
                +Y++iW vv+F+v  f
  CCG91594.1 54 LYALIWLVVFFVVAGF 69
                7***********9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 611.50
//
Query:       CCG91595.1  [L=558]
Description: 30S ribosomal protein S1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.8e-103  338.4  34.8    9.6e-21   73.9   3.8    6.1  6  S1             S1 RNA binding domain
    3.8e-10   39.7  14.9        0.1   12.7   0.0    7.7  7  S1_2           S1 domain
    1.7e-09   38.4   5.4      0.029   15.1   0.1    5.7  6  PCB_OB         Penicillin-binding protein OB-like domain
    6.7e-05   22.6   1.1      0.015   14.9   0.0    3.8  3  DUF2110        Uncharacterized protein conserved in archaea (
     0.0005   19.9   2.1        1.9    8.4   0.1    4.1  4  CSD            'Cold-shock' DNA-binding domain
     0.0014   18.5   0.0         13    5.8   0.0    4.3  5  RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
     0.0025   17.7   0.5        5.7    6.8   0.1    3.9  3  DUF5335        Family of unknown function (DUF5335)
  ------ inclusion threshold ------
        0.1   12.7   7.4        8.7    6.6   0.2    4.6  4  TRAM_2         TRAM domain
        1.2    9.3   6.5        2.1    8.5   0.3    3.6  4  RuvA_N         RuvA N terminal domain


Domain annotation for each model (and alignments):
>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   3.2   7.1e-13   1.4e-09       4      74 ..      14      77 ..      11      78 .. 0.96
   2 !   34.6   0.2   8.9e-12   1.8e-08       2      75 .]      93     161 ..      92     161 .. 0.94
   3 !   72.8   3.1   1.1e-23   2.2e-20       2      75 .]     179     250 ..     178     250 .. 0.96
   4 !   70.8   0.0   4.7e-23   9.3e-20       2      75 .]     264     337 ..     263     337 .. 0.97
   5 !   64.9   0.0   3.2e-21   6.4e-18       4      75 .]     353     424 ..     351     424 .. 0.97
   6 !   73.9   3.8   4.8e-24   9.6e-21       1      75 []     437     510 ..     437     510 .. 0.98

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 7.1e-13
                TTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEE CS
          S1  4 kgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsi 74
                +g +v+G+V++ + + + V++g++ eg +p+se +       + e ++vG+e++v ++ ++++++ ++ls+
  CCG91595.1 14 EGSIVKGKVVDKNSKEVVVDIGYKSEGIIPLSEFE-------EPESIQVGQEIEVLLESLENEEGMVVLSR 77
                799********************************.......78*********************999996 PP

  == domain 2  score: 34.6 bits;  conditional E-value: 8.9e-12
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 +e+g  ++G+V++v+kgG+  ++g  ve+f+pas+++    v+ ++ + ++G ++  k+ k+ ++r++++ls++
  CCG91595.1  93 FEEGGTITGKVKQVVKGGLMLNIG--VEAFLPASQID---VVPPKNLKEYEGATLTCKIVKISEERKNVVLSRR 161
                 689999******************..***********...4689999999**********************86 PP

  == domain 3  score: 72.8 bits;  conditional E-value: 1.1e-23
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 + +g+ v+G+V++vt++Gaf++l+ g++g++++ ++s+  r+ +p+e lkvG+e++v+v++vd++++r++l +k
  CCG91595.1 179 VHVGDLVKGVVKNVTDFGAFIDLD-GIDGLIHITDMSWG-RINHPSEILKVGQEIEVVVIDVDREKERVSLGLK 250
                 679*********************.**************.******************************9875 PP

  == domain 4  score: 70.8 bits;  conditional E-value: 4.7e-23
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                   +g+ v+G+V+++ ++Gaf+el+ g+eg+v++se+s+  ++ +p+evl++G+ev++ vl+++k++ +++ls+k
  CCG91595.1 264 YPVGTKVKGKVVNLAPYGAFIELEPGIEGLVHISEISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSLSLK 337
                 579********************************************************************986 PP

  == domain 5  score: 64.9 bits;  conditional E-value: 3.2e-21
                 TTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   4 kgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                  g++v+G+V++ + +Ga++el+n  +gf+++++ls+  ++ +p+evlk+G+e+++kvl++dk++ +i l ik
  CCG91595.1 353 PGTIVKGKVKNFSAYGAYIELENALDGFIHVNDLSWTRKINHPSEVLKKGEEIEAKVLEIDKTNQKILLGIK 424
                 699****************************************************************99886 PP

  == domain 6  score: 73.9 bits;  conditional E-value: 4.8e-24
                 HSTTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   1 kpekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 k ++ge+v+G+V+++  +Gaf++l  +++g+v++s++s+d rv + ++vlkvG+ev ++++k+dk++rri lsik
  CCG91595.1 437 KYKVGEIVSGKVSKIASFGAFIQLADEIDGLVHISQISAD-RVAKVKDVLKVGQEVSARIIKIDKEERRIGLSIK 510
                 5789************************************.********************************97 PP

>> S1_2  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.5   6.1e-05      0.12       2      46 ..      15      61 ..      15      63 .. 0.87
   2 ?    3.3   0.0     0.042        83       2      34 ..      96     126 ..      96     134 .. 0.89
   3 !    7.2   0.3    0.0025       5.1       1      46 [.     181     233 ..     181     236 .. 0.71
   4 ?    3.2   0.0     0.048        95       1      35 [.     266     300 ..     266     319 .. 0.89
   5 ?    3.7   0.0     0.032        64       2      31 ..     354     383 ..     353     407 .. 0.84
   6 ?   -2.4   0.0       2.5   5.1e+03      21      36 ..     413     428 ..     401     430 .. 0.72
   7 !   12.7   0.0   5.1e-05       0.1       1      35 [.     440     474 ..     440     492 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.1e-05
        S1_2  2 GkintlkvlretdfgyfLqkdesgevlLpkkevp..eeleiGdeveV 46
                G i++ kv++++++ ++++ + + e   p +e +  e +++G+e+eV
  CCG91595.1 15 GSIVKGKVVDKNSKEVVVDIGYKSEGIIPLSEFEepESIQVGQEIEV 61
                899****************88778888888887556**********9 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.042
        S1_2   2 GkintlkvlretdfgyfLqkdesgevlLpkkev 34 
                 G + t kv+   + g++L+ +   e +Lp +++
  CCG91595.1  96 GGTITGKVKQVVKGGLMLNIGV--EAFLPASQI 126
                 667899************9887..9****9987 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0025
        S1_2   1 iGkintlkvlretdfgyfLqkdesgevlLpkkevp........eeleiGdeveV 46 
                 +G  ++  v+  tdfg+f++ d+  + l +  ++         e l++G+e+eV
  CCG91595.1 181 VGDLVKGVVKNVTDFGAFIDLDG-IDGLIHITDMSwgrinhpsEILKVGQEIEV 233
                 58889999************999.888888766533222223456667777766 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.048
        S1_2   1 iGkintlkvlretdfgyfLqkdesgevlLpkkevp 35 
                 +G+ ++ kv+   + g+f++ + + e l++ +e+ 
  CCG91595.1 266 VGTKVKGKVVNLAPYGAFIELEPGIEGLVHISEIS 300
                 69999******************9******99996 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.032
        S1_2   2 GkintlkvlretdfgyfLqkdesgevlLpk 31 
                 G+i++ kv+  +  g++++ ++  + + + 
  CCG91595.1 354 GTIVKGKVKNFSAYGAYIELENALDGFIHV 383
                 9*****************987766666655 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 2.5
        S1_2  21 kdesgevlLpkkevpe 36 
                 +++++++lL  k+++e
  CCG91595.1 413 DKTNQKILLGIKQLTE 428
                 4456899999998886 PP

  == domain 7  score: 12.7 bits;  conditional E-value: 5.1e-05
        S1_2   1 iGkintlkvlretdfgyfLqkdesgevlLpkkevp 35 
                 +G+i++ kv ++ +fg+f+q  ++ + l++ +++ 
  CCG91595.1 440 VGEIVSGKVSKIASFGAFIQLADEIDGLVHISQIS 474
                 6*******************666699999999986 PP

>> PCB_OB  Penicillin-binding protein OB-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.29   5.7e+02      27      64 ..       8      47 ..       2      87 .. 0.80
   2 ?   -1.9   0.0       2.7   5.5e+03      13      44 ..      78     108 ..      58     141 .. 0.59
   3 !   15.1   0.1   1.4e-05     0.029      20      96 ..     171     234 ..     154     252 .. 0.72
   4 !    7.0   0.0    0.0049       9.8      21      91 ..     257     316 ..     240     335 .. 0.77
   5 !   10.0   0.0   0.00055       1.1      27      92 ..     349     404 ..     326     420 .. 0.78
   6 ?    1.7   0.2      0.21   4.1e+02      21      91 ..     431     489 ..     409     500 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.29
                TSSTC..TTEEEEEEEEEETTEEEEEETTS-EEEEEGGGG CS
      PCB_OB 27 klpds..gelrpAvVlsvseksarvglrdgetgtiplegl 64
                ++pd+  g+++++ V++ + k++ v +  +++g ipl++ 
  CCG91595.1  8 SIPDFveGSIVKGKVVDKNSKEVVVDIGYKSEGIIPLSEF 47
                55543338899999*************9999999999875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.7
                 HCT..HHHHHHHCCTSSTCTTEEEEEEEEEET CS
      PCB_OB  13 laeadeealeealkklpdsgelrpAvVlsvse 44 
                 +++a+++++++ lk+  ++g+  ++ V +v +
  CCG91595.1  78 QKAAQKQNWDKILKTF-EEGGTITGKVKQVVK 108
                 3444556666555444.344444555555555 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 1.4e-05
                 HHHHHCCTSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTEEEEEE CS
      PCB_OB  20 aleealkklpdsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGdvvlvr 96 
                 +  + l +   +g+l+++vV +v++ +a + l dg  g i + +++w r            + +s++lk+G+ + v 
  CCG91595.1 171 KRLQFL-EKVHVGDLVKGVVKNVTDFGAFIDL-DGIDGLIHITDMSWGRI-----------NHPSEILKVGQEIEVV 234
                 222333.334689*******************.***************99...........5788999999644433 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0049
                 HHHHCCTSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTE CS
      PCB_OB  21 leealkklpdsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGd 91 
                 +e+  +k+p +g  +++ V++  + +a ++l+ g +g + +++++w +k          ++++s+vl+ G+
  CCG91595.1 257 WENIEEKYP-VGTKVKGKVVNLAPYGAFIELEPGIEGLVHISEISWTQK----------ITKPSEVLSMGQ 316
                 544444444.556678889999***************************..........456777777775 PP

  == domain 5  score: 10.0 bits;  conditional E-value: 0.00055
                 TSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTEE CS
      PCB_OB  27 klpdsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGdv 92 
                 +l   g ++++ V + s+ +a ++l++   g+i +++l+w rk           + +s+vlk+G+ 
  CCG91595.1 349 ELYPPGTIVKGKVKNFSAYGAYIELENALDGFIHVNDLSWTRKI----------NHPSEVLKKGEE 404
                 444567888999999999*************************4..........456677777664 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.21
                 HHHHCCTSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTE CS
      PCB_OB  21 leealkklpdsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGd 91 
                 + ++++k  ++ge++ + V ++   +a ++l+d+  g + +++++  r            ++++dvlk+G+
  CCG91595.1 431 W-KEIEKKYKVGEIVSGKVSKIASFGAFIQLADEIDGLVHISQISADRV-----------AKVKDVLKVGQ 489
                 4.34556667889999999999999999999988666666666654444...........45666666665 PP

>> DUF2110  Uncharacterized protein conserved in archaea (DUF2110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.084   1.7e+02      68      94 ..      12      38 ..       4      57 .. 0.84
   2 !   14.9   0.0   7.4e-06     0.015      58     103 ..      83     128 ..      78     140 .. 0.89
   3 ?    1.3   0.0      0.11   2.2e+02      57      88 ..     427     458 ..     423     505 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.084
     DUF2110 68 veegevyvGtlesldedgfvldigvev 94
                + eg +++G + + ++++ v+dig + 
  CCG91595.1 12 FVEGSIVKGKVVDKNSKEVVVDIGYKS 38
                67899*******************984 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 7.4e-06
     DUF2110  58 reefgeitkeveegevyvGtlesldedgfvldigvevripkdelkp 103
                 ++++++i k++eeg +++G ++++ + g +l+igve   p+++++ 
  CCG91595.1  83 KQNWDKILKTFEEGGTITGKVKQVVKGGLMLNIGVEAFLPASQIDV 128
                 579*********************************9999999875 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.11
     DUF2110  57 lreefgeitkeveegevyvGtlesldedgfvl 88 
                  ++ + ei+k+ + ge++ G ++++ + g  +
  CCG91595.1 427 TEDPWKEIEKKYKVGEIVSGKVSKIASFGAFI 458
                 56789*****************9998766554 PP

>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.2   2.4e+03       3      53 ..     187     237 ..     185     244 .. 0.54
   2 ?    2.9   0.0     0.051     1e+02      16      51 ..     283     322 ..     271     331 .. 0.76
   3 ?    5.1   0.0     0.011        21       2      53 ..     358     411 ..     357     418 .. 0.79
   4 !    8.4   0.1   0.00095       1.9      13      53 ..     453     497 ..     444     504 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
                 EEEEEEETTTTEE.EEEETTSS-EEEEETTTS-STT.....TS--STSEEEEEEEE CS
         CSD   3 GtVkwfnakkgfG.FItredgdkdvFvHvsaiqgdg....frsLqegqeVeFevve 53 
                 G+Vk + +   fG FI + dg  d  +H+++++        + L+ gqe+e  v++
  CCG91595.1 187 GVVKNVTD---FGaFI-DLDGI-DGLIHITDMSWGRinhpSEILKVGQEIEVVVID 237
                 66666666...66333.33333.345566655544444445667778877766665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.051
                 EEEETTSS-EEEEETTTS-STT......TS--STSEEEEEE CS
         CSD  16 FItredgdkdvFvHvsaiqgdg.....frsLqegqeVeFev 51 
                 FI+ e g  +  vH+s+i+ ++      + L  gqeVe  v
  CCG91595.1 283 FIELEPGI-EGLVHISEISWTQkitkpSEVLSMGQEVEAMV 322
                 55555555.4459*****998888888999******99655 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.011
                 EEEEEEEETTTTEE.EEEETTSS-EEEEETTTS-STT......TS--STSEEEEEEEE CS
         CSD   2 tGtVkwfnakkgfG.FItredgdkdvFvHvsaiqgdg.....frsLqegqeVeFevve 53 
                 +G+Vk f+a   +G +I+ e+   d F+Hv +++ +       + L++g+e+e +v e
  CCG91595.1 358 KGKVKNFSA---YGaYIELENAL-DGFIHVNDLSWTRkinhpSEVLKKGEEIEAKVLE 411
                 89******9...99667777666.******9999877778888999999999877766 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.00095
                 TEE.EEEETTSS-EEEEETTTS-STT.....TS--STSEEEEEEEE CS
         CSD  13 gfG.FItredgdkdvFvHvsaiqgdg....frsLqegqeVeFevve 53 
                 +fG FI+ +d+  d  vH+s+i+ d      + L+ gqeV+  +++
  CCG91595.1 453 SFGaFIQLADEI-DGLVHISQISADRvakvKDVLKVGQEVSARIIK 497
                 477688888887.889*********977766779999999866665 PP

>> RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       0.4   7.9e+02      32      56 ..      51      75 ..      46      78 .. 0.80
   2 !    5.8   0.0    0.0067        13      33      56 ..     224     247 ..     199     249 .. 0.83
   3 ?   -2.8   0.0       3.3   6.6e+03       1      12 [.     316     327 ..     312     336 .. 0.77
   4 ?   -1.3   0.0       1.1   2.2e+03      34      55 ..     399     420 ..     379     422 .. 0.78
   5 !    5.7   0.0     0.007        14      25      56 ..     478     507 ..     456     509 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.4
  RNase_II_C_S1 32 aglplGervrVrLveADvatrrvrF 56
                   + + +G++++V L++   +++ v +
     CCG91595.1 51 ESIQVGQEIEVLLESLENEEGMVVL 75
                   57889********998888887766 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0067
  RNase_II_C_S1  33 glplGervrVrLveADvatrrvrF 56 
                     l++G++++V + ++D ++ rv +
     CCG91595.1 224 ILKVGQEIEVVVIDVDREKERVSL 247
                    4899************99999975 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3.3
  RNase_II_C_S1   1 etFdAvVvdvdd 12 
                    ++ +A+V+d ++
     CCG91595.1 316 QEVEAMVLDINK 327
                    567889988665 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.1
  RNase_II_C_S1  34 lplGervrVrLveADvatrrvr 55 
                    l+ Ge+++ ++ e D ++ ++ 
     CCG91595.1 399 LKKGEEIEAKVLEIDKTNQKIL 420
                    6778888888888887777765 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.007
  RNase_II_C_S1  25 eArveggaglplGervrVrLveADvatrrvrF 56 
                    +A+v +   l++G++v  r+ + D ++rr+ +
     CCG91595.1 478 VAKVKD--VLKVGQEVSARIIKIDKEERRIGL 507
                    467766..8*******************9976 PP

>> DUF5335  Family of unknown function (DUF5335)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.019        38      72     107 ..     217     251 ..     199     257 .. 0.81
   2 ?    1.6   0.0      0.12   2.4e+02      69     100 ..     301     332 ..     279     340 .. 0.75
   3 !    6.8   0.1    0.0029       5.7      58     102 ..     381     420 ..     369     429 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.019
     DUF5335  72 liakPaevyveeedgelesleiededgektlitfee 107
                 +i++P e+ +  ++ e+  ++++ e +e+  + +++
  CCG91595.1 217 RINHPSEILKVGQEIEVVVIDVDRE-KERVSLGLKQ 251
                 79*******************9766.6666666655 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
     DUF5335  69 leHliakPaevyveeedgelesleiededgek 100
                  +  i kP ev    ++ e   l+i++++++ 
  CCG91595.1 301 WTQKITKPSEVLSMGQEVEAMVLDINKAEQKL 332
                 56679999999999999999999999987654 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0029
     DUF5335  58 vevavggereeleHliakPaevyveeedgelesleiededgektl 102
                 + v+  +     +  i++P ev ++ e+ e + lei++  ++k l
  CCG91595.1 381 IHVNDLS----WTRKINHPSEVLKKGEEIEAKVLEIDKT-NQKIL 420
                 4443333....7789*********************877.44444 PP

>> TRAM_2  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0073        15       1      23 [.      55      78 ..      55      82 .. 0.72
   2 ?    0.0   0.6      0.49   9.8e+02       1      11 [.     227     237 ..     203     242 .. 0.52
   3 ?    0.0   0.4      0.48   9.6e+02       1      12 [.     227     240 ..     227     248 .. 0.74
   4 ?    6.6   0.2    0.0044       8.7      25      55 ..     461     499 ..     438     502 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0073
                BTSEEEEEEEE.EETTEEEEEETT CS
      TRAM_2  1 iGktvevlvdg.eeeglyvGRsya 23
                +G+++evl ++ e+e+++v  s +
  CCG91595.1 55 VGQEIEVLLESlENEEGMVVLSRQ 78
                9**********9555555554444 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.49
                 BTSEEEEEEEE CS
      TRAM_2   1 iGktvevlvdg 11 
                 +G+++ev+v +
  CCG91595.1 227 VGQEIEVVVID 237
                 45555555444 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.48
                 BTSEEEEEEEE..E CS
      TRAM_2   1 iGktvevlvdg..e 12 
                 +G+++ev+v +   
  CCG91595.1 227 VGQEIEVVVIDvdR 240
                 8*******988531 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0044
                 -TTTS--EEEES---T...........T-EEEEEEEEEE CS
      TRAM_2  25 APEvDgevyvtgaekl.sk.......vGdfvkvkItdad 55 
                 A E+Dg v++++ + + ++       vG+ v ++I+++d
  CCG91595.1 461 ADEIDGLVHISQISADrVAkvkdvlkVGQEVSARIIKID 499
                 77*********9877655579999999999999999876 PP

>> RuvA_N  RuvA N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.3     0.001       2.1       5      56 ..      18      72 ..      16      74 .. 0.75
   2 ?   -3.6   0.0       6.4   1.3e+04       5      31 ..      99     122 ..      98     132 .. 0.67
   3 ?    1.7   0.1      0.14   2.8e+02       5      49 ..     185     237 ..     183     247 .. 0.80
   4 ?   -0.4   0.0      0.65   1.3e+03       5      37 ..     270     303 ..     268     330 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.001
                EEEEEEEESSCEEEEEETTEEEEE..EE-HHHHCC....-TTSEEEEEEEEEEETTEE CS
      RuvA_N  5 lkGkvvekepdsivvevggvGYev..fvplstlss....kegeevklythlivrEdal 56
                +kGkvv+k+ +++vv+   +GY+    +pls +++    ++g+e+++  +   +E+++
  CCG91595.1 18 VKGKVVDKNSKEVVVD---IGYKSegIIPLSEFEEpesiQVGQEIEVLLESLENEEGM 72
                89*************9...556441157877887778888888888887777666665 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.4
                 EEEEEEEESSCEEEEEETTEEEEEEE- CS
      RuvA_N   5 lkGkvvekepdsivvevggvGYevfvp 31 
                 ++Gkv ++ ++ ++++   +G e f+p
  CCG91595.1  99 ITGKVKQVVKGGLMLN---IGVEAFLP 122
                 6777777766666664...66666666 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.14
                 EEEEEEEESSCEEEEEETTEEEEEEE-HHHHCC........-TTSEEEEEEEE CS
      RuvA_N   5 lkGkvvekepdsivvevggvGYevfvplstlss........kegeevklythl 49 
                 +kG v  +++  + ++  g+   ++++  ++ +        k+g+e+++ +  
  CCG91595.1 185 VKGVVKNVTDFGAFIDLDGIDGLIHITDMSWGRinhpseilKVGQEIEVVVID 237
                 799999999999***************88776677777788888888877655 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.65
                 EEEEEEEESSCEEEEEE.TTEEEEEEE-HHHHCC CS
      RuvA_N   5 lkGkvvekepdsivvev.ggvGYevfvplstlss 37 
                 +kGkvv + p  + +e   g+   v++++ ++++
  CCG91595.1 270 VKGKVVNLAPYGAFIELePGIEGLVHISEISWTQ 303
                 7999999999989888757888888888655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 3303.48
//
Query:       CCG91596.1  [L=705]
Description: Fe2+ transport system protein B [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-55  187.4   0.0    1.6e-55  186.9   0.0    1.2  1  FeoB_N       Ferrous iron transport protein B
    6.1e-42  142.4   5.1      1e-27   96.6   0.1    2.6  2  Gate         Nucleoside recognition
    3.2e-18   65.2   0.8    3.2e-18   65.2   0.8    2.4  2  FeoB_C       Ferrous iron transport protein B C terminus
    1.4e-17   63.8   0.0    2.3e-17   63.1   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0001   21.8   0.0    0.00016   21.2   0.0    1.3  1  SRPRB        Signal recognition particle receptor beta subuni
      0.007   15.9   0.0       0.81    9.2   0.0    2.6  1  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0073   16.2   0.2        1.2    9.1   0.0    2.3  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.057   13.5   0.1        2.4    8.2   0.0    2.3  2  Dynamin_N    Dynamin family
      0.094   13.2   0.0        0.2   12.2   0.0    1.5  1  ABC_tran     ABC transporter


Domain annotation for each model (and alignments):
>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.9   0.0   8.2e-59   1.6e-55       2     154 ..      21     179 ..      20     181 .. 0.95

  Alignments for each domain:
  == domain 1  score: 186.9 bits;  conditional E-value: 8.2e-59
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE.TTEEEEEEE----SSSSSSSHHHHHHHHHHH.....CTSSSEEEEEEEGGGHHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklkl.kgkeveivDlPGiYslsayseeekvardfll.....eeepdvvvnvvdatnlern 94 
                 t+alvGnpn+Gkttlfnaltg +qk++N+pGvt+ekk g + +  g++++++DlPG+Ysl + s +ek+++++ll     + +pd ++ +vda+nler+
  CCG91596.1  21 TFALVGNPNSGKTTLFNALTGLRQKIANYPGVTIEKKVGIFYTlYGEKCQLIDLPGTYSLLPNSPDEKITTEVLLglredTPKPDGIICIVDASNLERS 119
                 789************************************9865267****************************9887666789*************** PP

                 HHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH CS
      FeoB_N  95 LyLtlqllelgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieellk 154
                 LyL+ q+lel+ pvv++lnmide+ +kg e+d + Ls+k+++pvv+++a+kk+g+ +l++
  CCG91596.1 120 LYLVSQILELDRPVVIVLNMIDELAAKGWEVDCRILSQKFNCPVVPCQANKKSGVVQLKT 179
                 *******************************************************99985 PP

>> Gate  Nucleoside recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   1.6   1.9e-15   3.7e-12       3     109 ..     369     460 ..     367     462 .. 0.95
   2 !   96.6   0.1     5e-31     1e-27       1     112 []     535     674 ..     535     674 .. 0.98

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 1.9e-15
        Gate   3 kagpiillasiliwflssssllgrigkllepvfaplgqeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpksalafllfvllytpcvat 101
                  ++p il+++++i++l+++++++r+++l++++++  g  l++k++ +ll++ a   ++++ +   +         ++d+pk++l ++l+  +++ c a+
  CCG91596.1 369 VFLPQILVLFFFIGLLEDTGYMARAAFLMDKLMNAVG--LHGKSFLPLLSSHA---CAIPGILAAR---------TIDNPKDRLLTILIAPFAS-CSAR 452
                 67999********************************..**************...******9999.........******************8.**** PP

        Gate 102 lavivrel 109
                 l+v+v + 
  CCG91596.1 453 LPVYVLMC 460
                 ****9765 PP

  == domain 2  score: 96.6 bits;  conditional E-value: 5e-31
        Gate   1 llkagpiillasiliwflss..............ssllgrigkllepvfaplgqeldwkatvslltgfaakevvvgtlgtly................t 69 
                 l++ag+ii+ +sil+wfl+s              +s++grig ++epv++plg  ++wk+ v+ll+ +aa+e+ v+t+g++y                +
  CCG91596.1 535 LKRAGTIIVSVSILLWFLTShpkfpgesnsqalsHSFAGRIGHFIEPVIKPLG--FNWKIGVGLLSAQAAREMFVSTMGVIYtgeetkenilplaqamR 631
                 79***************************************************..****************************************9999 PP

        Gate  70 salgellqgfdtpksalafllfvllytpcvatlavivrelgsk 112
                 ++ +   ++ ++p s++++++ ++++ +c++t+av++re+gs+
  CCG91596.1 632 KDKWPDGKEVFSPLSCFSLMIYFAFSLQCLSTVAVVRRETGSW 674
                 9999999**********************************98 PP

>> FeoB_C  Ferrous iron transport protein B C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   1.2         9   1.8e+04       2      13 ..     310     321 ..     307     323 .. 0.54
   2 !   65.2   0.8   1.6e-21   3.2e-18       1      53 []     478     530 ..     478     530 .. 0.98

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 9
      FeoB_C   2 fslYllgilval 13 
                 fs+ +  +++a+
  CCG91596.1 310 FSMAMALMFLAV 321
                 555555555554 PP

  == domain 2  score: 65.2 bits;  conditional E-value: 1.6e-21
      FeoB_C   1 lfslYllgilvallvalllkktt.lkgepspfvmELPpYrlPslknvliktweR 53 
                 +f+lY+lgi  a++ a+++kk t +kg++s++++ELPpYr+Ps+k++ ++++eR
  CCG91596.1 478 IFFLYILGIGGAFFFAWIFKK-TlFKGKQSFLLLELPPYRRPSIKSISLQMYER 530
                 69*******************.99****************************98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   1.1e-20   2.3e-17       2     113 ..      22     138 ..      21     139 .. 0.77

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 1.1e-20
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE.ETTEEEEEEECGGCSS...HHHHHHHHHHHHHHHHC....TSEEEEEEETTTTCSHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk.lkgkeielvDtpGlie...gaseekglgkaflalee....adlillvvdaseeklkp 92 
                 +a+vG+pN+GK+tL+naltg + +++++pg+T++ + g +  l g++++l+D+pG ++   ++ +ek  ++ +l l+e     d i+ +vdas + l++
  CCG91596.1  22 FALVGNPNSGKTTLFNALTGLRQKIANYPGVTIEKKVGIFYtLYGEKCQLIDLPGTYSllpNSPDEKITTEVLLGLREdtpkPDGIICIVDAS-N-LER 118
                 69************************************98855569*********8644435555555566666655554436********88.4.555 PP

                 HHHHHHHHHHHTTSEEEEEEE CS
    MMR_HSR1  93 ldeeleelleeakkplilvln 113
                     + ++l e ++p+++vln
  CCG91596.1 119 SLYLVSQIL-ELDRPVVIVLN 138
                 544444444.5779*999998 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     8e-08   0.00016       5      63 ..      21      81 ..      17     127 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 8e-08
                EEEEE-STTSSHHHHHHHHHHS...S---B---SS-EEETTG...GGTT-SEEEETT-GCCS CS
       SRPRB  5 avllvGlsdsGKTslftrLttd...svkktvtSqessaalkvksekgskltliDfPGheklr 63
                ++ lvG  +sGKT+lf+ Lt      ++   + +e+++   + +  g+k++liD+PG  +l 
  CCG91596.1 21 TFALVGNPNSGKTTLFNALTGLrqkIANYPGVTIEKKVGIFY-TLYGEKCQLIDLPGTYSLL 81
                6789**************986532244455577888888888.889***********98885 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00041      0.81       5     135 ..      21     143 ..      17     300 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00041
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESS.........SGGGHHHHHHH.... CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPG.........HvdFskevirg.... 90 
                 +++++g  ++GKtTL  +L+   ++i++                    g+Ti+ ++  ++ +    +++liD PG         +++ + ev  g    
  CCG91596.1  21 TFALVGNPNSGKTTLFNALTGLRQKIAN------------------YPGVTIEKKVGIFY-TLYGEKCQLIDLPGtysllpnspDEKITTEVLLGlred 100
                 6777788888888888888755555554..................23566666655555.55556666666666222222222234455555552222 PP

                 HHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST CS
    GTP_EFTU  91 lrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrl 135
                 + + Dg + +vda+    +++  ++ ++l+++ p+++++N +D+l
  CCG91596.1 101 TPKPDGIICIVDAS--NLERSLYLVSQILELDRPVVIVLNMIDEL 143
                 33567777777776..45556666777777777777777777777 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.013        25     101     122 ..      21      42 ..       5      59 .. 0.82
   2 !    9.1   0.0   0.00058       1.2      35     101 ..     116     185 ..     108     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.013
                  EEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpe 122
                  t +lvG+   GK+tL nal++ 
   CCG91596.1  21 TFALVGNPNSGKTTLFNALTGL 42 
                  67899**************984 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00058
                  HHHHHHHHH...HTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSE CS
  RsgA_GTPase  35 ldrfLvlae...ekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkdkt 101
                  l+r L l+    e + ++vivln iD l  +    + +   ++++++v+ ++a++k+g+ +lk++l++++
   CCG91596.1 116 LERSLYLVSqilELDRPVVIVLNMIDELAAKGWEVDCRILSQKFNCPVVPCQANKKSGVVQLKTVLSKEI 185
                  666665544111456699************9967778888999**********************99876 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0012       2.4       2      21 ..      23      42 ..      22      53 .. 0.91
   2 ?    3.2   0.0      0.04        80      98     166 ..      64     138 ..      43     140 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0012
                EEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N  2 avvGsqSsGKSSvlnaLlge 21
                a+vG+ +sGK+++ naL+g 
  CCG91596.1 23 ALVGNPNSGKTTLFNALTGL 42
                78***************995 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.04
                 TTS-SEEEEE---B-S..SSGTTS.......HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE CS
   Dynamin_N  98 llvkgltlvDlPGlds..vnkrdq.......elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvlt 166
                 l  ++  l+DlPG  s   n  d+         ++e   k d i+++++a++     ++l l +++ + ++ +++vl+
  CCG91596.1  64 LYGEKCQLIDLPGTYSllPNSPDEkittevlLGLREDTPKPDGIICIVDASNL---ERSLYLVSQILELDRPVVIVLN 138
                 55678899*****9995555555544443332233334466778888777762...2456666666666666666665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0001       0.2      13      37 ..      21      45 ..      15      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0001
                EEEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkp 37
                + a+vG+  +GK+tL+++l+gl ++
  CCG91596.1 21 TFALVGNPNSGKTTLFNALTGLRQK 45
                579******************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 4437.13
//
Query:       CCG91597.1  [L=92]
Description: Fe2+ transport system protein A [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-07   29.8   0.0    6.3e-07   29.6   0.0    1.1  1  FeoA      FeoA domain


Domain annotation for each model (and alignments):
>> FeoA  FeoA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   3.5e-11   6.3e-07       2      73 ..      17      84 ..      16      85 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 3.5e-11
                EGGG--TT-EEEEEEE-TT.SSHHHHHHHHT--TT-EEEEEEE-TTS-SEEEEETTEEEEE-HHHHTTEEEE CS
        FeoA  2 pLsdlkeGergeiarisdedpellrrLremGlvpGarievvarapfggplvvrvgdtrvaLgreeAqaIlVe 73
                +L++++ G    i +i  + +    rLre+G+++ a++  +a+   g ++v+ v ++++ L + +A++I+V+
  CCG91597.1 17 SLAEADIGSIFYIHSIEGN-AVECHRLRELGFCEKAEVVKIAH---GAMTVCLVCGSKIGLNKLLAKRIFVT 84
                699999**********665.8899*****************87...6899*********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 652.54
//
Query:       CCG91598.1  [L=215]
Description: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-23   83.3   0.0    1.5e-23   82.9   0.0    1.2  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   8.4e-28   1.5e-23       2     134 ..      22     144 ..      21     145 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 8.4e-28
  Acyltransferase   2 vrvtglenlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegklv 95 
                      ++v+g+en+p+  p+++vaNH sylD+++  +++     +++++++a k l++  llg l+  l++i++dR  ++   gs   i++l+e++k +
       CCG91598.1  22 FKVYGQENIPS-FPVLIVANHCSYLDPPIVGCAF-----QKEIYFVARKTLFDSFLLGKLIGYLNTIPLDR--DKPEVGSFRLILDLFEKEKSI 107
                      689*******7.**********************.....89******************************..777799*************** PP

  Acyltransferase  96 viFPEGtrsregellpfkkGlvrlaakakkgvpivPvai 134
                      +iFPEGtrs +g l +   G++++aaka  +v ++P+ i
       CCG91598.1 108 LIFPEGTRSPSGTLQKAAPGVGYIAAKA--KVAVLPIRI 144
                      ****************************..******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1678.05
//
Query:       CCG91599.1  [L=64]
Description: hypothetical protein MFUM_170012 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.46
# Mc/sec: 420.83
//
Query:       CCG91600.1  [L=61]
Description: hypothetical protein MFUM_170013 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       145  (0.00808746); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 451.21
//
Query:       CCG91601.1  [L=146]
Description: hypothetical protein MFUM_170014 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       168  (0.00937029); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1039.29
//
Query:       CCG91602.1  [L=64]
Description: hypothetical protein MFUM_170015 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 520.71
//
Query:       CCG91603.1  [L=93]
Description: hypothetical protein MFUM_170016 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 692.12
//
Query:       CCG91604.1  [L=690]
Description: 3-phosphoshikimate 1-carboxyvinyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.2e-118  394.1   0.0   7.9e-118  393.7   0.0    1.1  1  EPSP_synthase    EPSP synthase (3-phosphoshikimate 1-carboxyv
      6e-53  179.7   0.0    1.2e-52  178.7   0.0    1.5  1  Cytidylate_kin   Cytidylate kinase
    4.3e-09   36.7   0.2    1.7e-08   34.8   0.2    1.9  1  Cytidylate_kin2  Cytidylate kinase-like family
    1.1e-07   32.5   0.1    5.4e-07   30.2   0.1    2.2  2  AAA_18           AAA domain
    0.00035   20.7   0.2       0.28   11.3   0.0    2.3  2  SKI              Shikimate kinase
    0.00039   20.8   0.0     0.0012   19.3   0.0    1.8  1  AAA_17           AAA domain
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.046   13.6   0.0    1.6  1  dNK              Deoxynucleoside kinase
       0.29   11.3   0.0       0.29   11.3   0.0    2.0  2  AAA_33           AAA domain


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.7   0.0  3.5e-121  7.9e-118       3     417 .]      12     427 ..      10     427 .. 0.91

  Alignments for each domain:
  == domain 1  score: 393.7 bits;  conditional E-value: 3.5e-121
                    CSS--EEEEE--B-HHHHHHHHHHHGGGBSSEEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-HHHHTT-GGGGGGHHHH CS
  EPSP_synthase   3 kgkrlegevkvpGsksisnralllAaLaegestitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeapeelvldlgnsgtalrlL 98 
                    + + ++gev+vpG+ksis+ra++lA+La+g+s i+n+L seD++ +l a+ ++g+ ++k    k+ +i+eg+ g + +p    +d+gnsgt +rlL
     CCG91604.1  12 PAAFIKGEVTVPGDKSISHRAVMLASLARGRSSIRNFLPSEDCLCTLRAFEAMGVSVEKQ--GKTHLIIEGKSGVLFPP-FEAIDCGNSGTMMRLL 104
                    566799************************************************877555..7999*****99999999.589************* PP

                    HHHHSEESSEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEETSS-BEEEEETSSTTHHHHHHHHHHHTTSBSEEEEES-TTHHHH CS
  EPSP_synthase  99 tallalasgevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkglklkgveikaevsSqqvtsllllaallaegtteleelasepsi 194
                    +++l+ +++++ L Gd s+ kRP++r++++Lr +Ga+i +   + ++pl+++ ++lkg+e++++++S+qv+s++lla+l+a g t+++e  +  s+
     CCG91604.1 105 AGILTAQPFYSKLIGDYSLSKRPMSRIIEPLRMMGAKIRADGPKDTPPLIIEPSTLKGIEYRLPIPSAQVKSCILLAGLFASGVTRIIE--PVASR 198
                    *****************************************************************************************..999** PP

                    HHHHHHHHHTT-EEEETTSSEEEEEE--SSB--EEEE--B-HHHHHHHHHHHHHTT-.EEEEES--GGGGH.HH..HHHHHHHHTTEEEE...... CS
  EPSP_synthase 195 ddtlkmlkkfgikietsgteesitvkGkeklpgteyvvegDassAayflvaAaitgg.evtvenvginslq.Gdiealdeilekmgaeit...... 282
                    d+t+++l++fg+      ++ +i  +G+ kl++t+++v+gD ssAa+++ aAa  +  e +v+ +g+n+++ G    l+ il +mga+i+      
     CCG91604.1 199 DHTERLLEQFGVRTIR--EKGEIILHGGMKLEATDIEVPGDFSSAAFWIGAAAAIPHsELRVRSIGLNPTRtGL---LN-ILLRMGAQIEesiesy 288
                    ***********98777..5666***************************999988888*************555...44.7778888877444355 PP

                    ..EESTSEEEEEET...TS--BEEEEEBGSTTSBHGGGHHHHHHHHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEEEEEEEE.EB-E CS
  EPSP_synthase 283 ..qeedasivvgps...glklkdvdietlpdeaptlavlaafaegttviegiaelrvketdrlaamateLrklGaeveeeedgliiipaekqlkga 373
                       e+  s+ v+ +      ++ ++i  ++de+p+lav+ a+a+g t+i++++elrvke+dr++a++t+Lr +G+evee+ dg++i++  + ++ a
     CCG91604.1 289 skGEPIGSLWVRGNklrATVIQGEEIVGVIDEIPILAVVGALADGVTEIRNAQELRVKESDRIKAIVTNLRAFGVEVEELVDGMRIKGK-NTVQAA 383
                    5555555555555556555566789************************************************************6665.56**** PP

                    EEE-TTSTTTTHHHHHHHHHSBSEEEEETTHHHHHHSSSHHHHH CS
  EPSP_synthase 374 evesydDhRiamalalaglvaegeveiddiectdksfpefeekL 417
                    +ves++DhRiama+++++l+a++  +idd++c+++s+p+f e+L
     CCG91604.1 384 RVESFGDHRIAMAFSILALRANKASRIDDVDCIATSYPGFQEDL 427
                    ****************************************9986 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.0   5.3e-56   1.2e-52       1     208 [.     471     676 ..     471     679 .. 0.94

  Alignments for each domain:
  == domain 1  score: 178.7 bits;  conditional E-value: 5.3e-56
                     EEEE-STTSSHHHHHHHHHHHHT-EEEEHHHHHHHHHHHHHHTT--TT-HHHHHHHHHT--EEEEEE........EEEETTE.E-TTGGGSHHHH CS
  Cytidylate_kin   1 iaiDGPagsGKssvaralaeklglkyldtgalYRalalaalrrkvdlldeaalvelakevelsfeae........kvllnge.dveeelrsdeve 86 
                     i+iDG ++sGKs+va+++a+ lg++y++tgalYRa+++ +l    d+ de++ ve  ++++l+   +        ++l++++  +e+elrs ev+
      CCG91604.1 471 ITIDGTTASGKSTVAKEIAKVLGFTYFNTGALYRAVTWKILALGYDVHDEEKAVEACRKLNLRCVIRkedsfsqaSILVDDQqPLEKELRSPEVN 565
                     89***********************************************************9987666789998888887752699********* PP

                     HHHHHHTTSHHHHHHHHHHHHTT-BSSBEEEEESSIIIIISTT-SEEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHCTSSS- CS
  Cytidylate_kin  87 kavSavaaipavRailvkklrelvkkarvvveGRDigtvvfpdaelKifldAsveeRakRRlkqlkakgtsvsleellaeikeRDklDkerevgp 181
                     +avS va+++++R+ l+  +rel+ k+ +vveGRDigtvvfp+++ K fldA  eeR kRR +q    g          ++++RD+lD  r+ +p
      CCG91604.1 566 EAVSIVASYRKIREWLLPFQRELAYKEPLVVEGRDIGTVVFPESPYKFFLDANLEEREKRREEQ----GER-------DNVAQRDRLDILRSSAP 649
                     ****************************************************************....444.......47899************ PP

                     S---TT-EEEETTTS-HHHHHHHHHHH CS
  Cytidylate_kin 182 Lklaedaliidtskltieevvekilel 208
                     L ++ da+ +dt+k ++++vvekil+ 
      CCG91604.1 650 LLCPVDAVKLDTTKPSAQKVVEKILDI 676
                     ************************975 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.2   7.5e-12   1.7e-08       1     138 [.     470     633 ..     470     643 .. 0.73

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 7.5e-12
  Cytidylate_kin2   1 iITIsreyGsgGetigeaLAekLglpfydreiieevakel....glseeeveevdersrlssflskllaarvagdtl................. 73 
                      +ITI+++ +sg++t+++++A+ Lg+ +++   + +++  +    g + +  e++ e     + ++  l++ +++++                  
       CCG91604.1 470 VITIDGTTASGKSTVAKEIAKVLGFTYFNTGALYRAVTWKilalGYDVHDEEKAVE-----ACRKLNLRCVIRKEDSfsqasilvddqqpleke 558
                      8*****************************66666665440112444444444444.....333333333333333345566999999****** PP

  Cytidylate_kin2  74 ...........deklddelfeaqervirelaaeesvVivGR.gadliLkdrpnvlrvfltapledrvkrvaeregls 138
                                    ++ +++e    + rela +e+ V+ GR  + +++ ++p  +++fl+a+le+r kr +e+ + +
       CCG91604.1 559 lrspevneavsIVASYRKIREWLLPFQRELAYKEPLVVEGRdIGTVVFPESP--YKFFLDANLEEREKRREEQGERD 633
                      **9999986655556666777778888999*666*******55999999988..***************99988765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.9   1.3e+04       1      20 [.     178     197 ..     178     206 .. 0.82
   2 !   30.2   0.1   2.4e-10   5.4e-07       1     118 [.     471     634 ..     471     643 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.9
      AAA_18   1 IlltGtpGvGKttlakeLsk 20 
                 Ill+G  ++G t + + +++
  CCG91604.1 178 ILLAGLFASGVTRIIEPVAS 197
                 899*******9988876665 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 2.4e-10
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.....gvnlrdvakenglllevdpe...aldeskrldedkldklldaleenss...................... 69 
                 I + Gt ++GK+t+ake++k lgf     g  +r v ++   l ++ ++   a++ +++l+   + +  d + ++s                       
  CCG91604.1 471 ITIDGTTASGKSTVAKEIAKVLGFtyfntGALYRAVTWKILALGYDVHDeekAVEACRKLNLRCVIRKEDSFSQASIlvddqqplekelrspevneavs 569
                 7899*************************5555555555444444444444555555555555555555555555446666666666666666666666 PP

      AAA_18  70 .................aleegknlvidghlaeleseaakdikkvvLtaspeelleRlekRgyeea 118
                                   l+  ++lv++g+    +      +k ++L+a+ ee+ +R e++g++++
  CCG91604.1 570 ivasyrkirewllpfqrELAYKEPLVVEGRDIGTVVFPESPYK-FFLDANLEEREKRREEQGERDN 634
                 6666667999999999988889999999999999988888899.******************9875 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00013      0.28       2      26 ..     478     502 ..     477     527 .. 0.86
   2 !    7.2   0.0    0.0022         5      89     156 ..     613     676 ..     604     678 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                 TSSHHHHHHHHHHHHTSEEEEHHHH CS
         SKI   2 GaGKstvGkllAkklglefiDlDel 26 
                 ++GKstv+k++Ak lg++++ +  l
  CCG91604.1 478 ASGKSTVAKEIAKVLGFTYFNTGAL 502
                 69****************9988665 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0022
                 EEEE--HHHHHHHHHHTTSSGGGCSCHHHHHHHHHHHHHHHHHCCSSCEEEECTSSHHHHHHHHHHHH CS
         SKI  89 iyLdvsleellerlkadkeRPllqekskeeelleelaereplyeeaadvvvdeseeskeevaeeilea 156
                 ++Ld++lee  +r +++ eR  + ++++    l+ l++  pl   +++v  d+++ s+++v+e+il+ 
  CCG91604.1 613 FFLDANLEEREKRREEQGERDNVAQRDR----LDILRSSAPLLCPVDAVKLDTTKPSAQKVVEKILDI 676
                 699****************877777777....67777777*************************985 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   5.2e-07    0.0012       3      34 ..     476     507 ..     475     553 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.2e-07
                 -TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHH CS
      AAA_17   3 gPGsGKgtqceklvekygfthlsaGdllreea 34 
                    sGK+t+++++++ +gft++++G l r++ 
  CCG91604.1 476 TTASGKSTVAKEIAKVLGFTYFNTGALYRAVT 507
                 5679***********************99874 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     2e-05     0.046       1      28 [.     471     498 ..     471     520 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
                 EEEEESTTSSHHHHHHHHHCCSTCEEEE CS
         dNK   1 ivveGnIgaGKstlvklLskklgvkvfe 28 
                 i+++G+ ++GKst++k ++k lg+  f+
  CCG91604.1 471 ITIDGTTASGKSTVAKEIAKVLGFTYFN 498
                 89*********************99886 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013      0.29       2      37 ..     471     506 ..     470     535 .. 0.86
   2 ?   -3.2   1.0       3.7   8.4e+03     109     129 ..     617     637 ..     616     647 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrl 37 
                 + + G  +sGKst+a++++k lg++  ++ +l+r++
  CCG91604.1 471 ITIDGTTASGKSTVAKEIAKVLGFTYFNTGALYRAV 506
                 666799*****************9888887777766 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.7
      AAA_33 109 etlkeRlakRaangddrsevp 129
                 + l+eR ++R+++g+++  + 
  CCG91604.1 617 ANLEEREKRREEQGERDNVAQ 637
                 568899999999887664444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4537.28
//
Query:       CCG91605.1  [L=296]
Description: succinyl-CoA synthetase alpha chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-24   85.0   3.3    1.2e-23   83.6   0.1    2.8  3  CoA_binding    CoA binding domain
    1.1e-14   54.5   0.0    1.8e-14   53.8   0.0    1.3  1  Ligase_CoA     CoA-ligase
    1.9e-08   34.2   0.0    3.4e-08   33.4   0.0    1.4  1  Succ_CoA_lig   Succinyl-CoA ligase like flavodoxin domain
  ------ inclusion threshold ------
      0.026   15.0   0.1       0.12   12.9   0.0    2.1  2  CoA_binding_2  CoA binding domain


Domain annotation for each model (and alignments):
>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.1   2.6e-27   1.2e-23       2      96 .]       7     100 ..       6     100 .. 0.97
   2 ?   -0.0   0.0      0.33   1.5e+03      35      58 ..     178     196 ..     144     237 .. 0.63
   3 ?    0.6   0.3      0.21   9.5e+02      67      93 ..     252     278 ..     200     283 .. 0.74

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 2.6e-27
                  TTEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEET.TEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEEEEESST CS
  CoA_binding   2 kdtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevl.glpvyksvdeleektevdvavitvPaesaqeavdelveagikgiviiteg 96 
                  k+ +v+v+G++g+   g++h++  ++yg+k+ +gv+p+k+g+  + ++p++++++e+++kt+++v++i+vPa++a++a++e+v+ ++ +i++iteg
   CCG91605.1   7 KTDRVVVQGITGK--YGAFHTRLCMEYGTKITAGVTPGKGGEFFEnNIPIFDTLKEAKAKTDCNVSLIFVPAPFAADAIVEAVDCQMDLIICITEG 100
                  6789*********..9*************************998879***********************************************97 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.33
                  EC-TTTTTCEETTEEEESCHHHHH CS
  CoA_binding  35 gvnprkvgtevlglpvyksvdele 58 
                  g+    +g+ ++gl +  +v el 
   CCG91605.1 178 GI----GGDPIHGLSIR-EVVELF 196
                  44....45577777777.444443 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.21
                  EEES-HHHHHHHHHHHHHTT-SEEEEE CS
  CoA_binding  67 vitvPaesaqeavdelveagikgivii 93 
                  +i+  +  + +++++  eagik+i  +
   CCG91605.1 252 IILGQSGTVTAKIEAFKEAGIKVIPSV 278
                  444455566777777777777777555 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0     4e-18   1.8e-14       1     150 [.     152     270 ..     152     273 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 4e-18
                 EESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHH CS
  Ligase_CoA   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkai 99 
                 ++++GtL+yea+ +++                g +q+ ++++G+d            + ++ e ++ + +dp+++++l+ +++G g +e++aa+++k+ 
  CCG91605.1 152 VSRSGTLTYEAVWQLTRL--------------GLGQSSCVGIGGDPIH---------GLSIREVVELFWEDPQTEAVLIIGEIG-GVEEQEAAQWIKEN 226
                 689***************..............***************6.........9**************************.**********9875 PP

                 HHTT...--S-EEEEEECTTHH.....HHHHHHHTTTSSEEE-SSHHHHHH CS
  Ligase_CoA 100 keakaegrelpvvarvaGteadpqelseqakaleeagveiasskaqalraa 150
                  +       +pv a+vaG +a+ ++++++a+a+  ++  ++++k +a + a
  CCG91605.1 227 PK-------KPVAAFVAGLTAPVGKRMGHAGAIILGQSGTVTAKIEAFKEA 270
                 54.......59************************9999999999988776 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   7.5e-12   3.4e-08       1     130 [.     146     280 ..     146     284 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 7.5e-12
  Succ_CoA_lig   1 pGkialisqSGalalalldwaasrglgfskvvslGn..eadvdvadlleylaedpetkvillylEsird.grkflsaarraarkkpvvvlksGrsea 94 
                   pGk++++s SG+l  + + ++++ glg s++v +G      +++ +++e + edp+t+++l+  E  +   ++ ++ +++   kkpv ++ +G ++ 
    CCG91605.1 146 PGKVGVVSRSGTLTYEAVWQLTRLGLGQSSCVGIGGdpIHGLSIREVVELFWEDPQTEAVLIIGEIGGVeEQEAAQWIKEN-PKKPVAAFVAGLTAP 241
                   79*********************************9444789*******************99996655134444444444.47*********8765 PP

  Succ_CoA_lig  95 garaaashtgalagsdavvda...afrqaGvlrvdslee 130
                     +      + + g++ +v+a   af++aG+ ++ s++e
    CCG91605.1 242 VGKRMGHAGAIILGQSGTVTAkieAFKEAGIKVIPSVSE 280
                   555443333445565555554344899999988877766 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.6e-05      0.12      15     115 ..      20     130 ..      10     131 .. 0.75
   2 ?   -1.0   0.0      0.54   2.4e+03      81     106 ..     250     275 ..     232     279 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.6e-05
                    HHHHHHHHHHHHT--EEE.ESSS-.SEETT..EES----T......T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT...---.HHHHHHHHH CS
  CoA_binding_2  15 fgykvlryllehglpvvp.Vnpke.eeilg..ekvyaslae.d.pepvdlvdvftppeatpeivkealalgakavwlqpg...sed.eeaaelaee 100
                    +g   +r + e g ++++ V+p + +e +    + + +l+e + ++++ +  +f+p+  +++ + ea++++   +++  +   ++d +++ +l+ +
     CCG91605.1  20 YGAFHTRLCMEYGTKITAgVTPGKgGEFFEnnIPIFDTLKEaKaKTDCNVSLIFVPAPFAADAIVEAVDCQMDLIICITEgipTFDmAKVKRLLFQ 115
                    5555555555555555543666655444442355788888855789999****************************9998995551567777788 PP

                    TT-EEE.ES-HHHHH CS
  CoA_binding_2 101 agirvvgdrCilveg 115
                    ++ r+vg++C+++++
     CCG91605.1 116 ENARLVGPNCPGIIT 130
                    ************975 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.54
                    SEEEE-TT---HHHHHHHHHTT-EEE CS
  CoA_binding_2  81 kavwlqpgsedeeaaelaeeagirvv 106
                     a++l ++    + +e+ +eagi+v+
     CCG91605.1 250 GAIILGQSGTVTAKIEAFKEAGIKVI 275
                    55555555555556677888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2121.80
//
Query:       CCG91606.1  [L=394]
Description: succinyl-CoA synthetase beta chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.3e-63  211.8   0.0    9.8e-63  211.4   0.0    1.2  1  ATP-grasp_2  ATP-grasp domain
    1.5e-18   67.1   0.0    2.5e-18   66.4   0.0    1.4  1  Ligase_CoA   CoA-ligase
    1.8e-10   40.7   0.1    4.1e-10   39.5   0.1    1.6  1  ATP-grasp_5  ATP-grasp domain
     0.0011   18.8   0.5     0.0028   17.4   0.5    1.6  1  GARS_A       Phosphoribosylglycinamide synthetase, ATP-grasp 
  ------ inclusion threshold ------
       0.13   11.8   0.0       0.28   10.7   0.0    1.6  1  ATP-grasp    ATP-grasp domain


Domain annotation for each model (and alignments):
>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.4   0.0   2.7e-66   9.8e-63       1     201 [.       2     209 ..       2     210 .. 0.99

  Alignments for each domain:
  == domain 1  score: 211.4 bits;  conditional E-value: 2.7e-66
                  BE-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTSSSEEEEE--SSSTCCCT.......TCEEEESSHHHHHHHHHCCTTSEEE-TTS-TT-EE CS
  ATP-grasp_2   1 nlhEyqakeilakygvkvpegevaesaeeaeeaakklgekelvvKaQvlaGGRGKa.......gGvklvkskeeakeaakellgkelvtkqtgkeGkk 91 
                  nl Ey ake+l k g++v++  vae++e a ++a kl ++ lvvKaQ+ aGGRGK+       gGvk+++s+ee+k++a++++g+ lvt qtg++G+ 
   CCG91606.1   2 NLLEYAAKELLVKEGIPVAQYGVAETPEAAFDIACKLAKRPLVVKAQIAAGGRGKGrflngleGGVKICQSPEEVKQIAQRMIGSILVTAQTGEQGQL 99 
                  799*********************************************************************************************** PP

                  E--EEEEE---ECEEEEEEEEEETTTTEEEEEEESSTTS-HHHHHHH-GGGEEEEEEBTTTB--HHHHHHHHHHCT--CHHHHHHHHHHHHHHHHHHH CS
  ATP-grasp_2  92 vekvlveealdikkElYlsivlDraskkvvviaSseGGvdiEevaakkPekiikvaidpakglkeeqareiakklglekelvkkaakiikklyklfve 189
                  v+kvlv+e++di+ E+Ylsi    ++ +++++ S+ GGv+iE++a ++P++i+k  + p   l+++qare   +lg++++++ ++++i+k lyk fv+
   CCG91606.1 100 VKKVLVSESIDISSEIYLSISYSHSTASLLLMGSRAGGVEIEKIAVENPQAIVKKFVLPDYSLWDFQAREFGLDLGFRGKELVELSRILKSLYKTFVK 197
                  ************************************************************************************************** PP

                  TTEEEEEEEEEE CS
  ATP-grasp_2 190 ldatlvEiNPLv 201
                   da+l EiNPL+
   CCG91606.1 198 HDASLCEINPLA 209
                  ***********7 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   6.9e-22   2.5e-18       1     153 []     269     389 ..     269     389 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 6.9e-22
                 EESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHH CS
  Ligase_CoA   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkai 99 
                 +vnG++La+++md++                 g+ +++++d+G++a           ++++ +a+++l+++++ +vil++i++G+++++ +a+++++a+
  CCG91606.1 269 MVNGAGLAMATMDILDRF--------------GGRPANFLDVGGGAD----------QSQVENAFRILLSNRNLRVILINIFGGIMRCDLIAEAIVEAT 343
                 79****************..............*************98..........9***************************************** PP

                 HHTT...--S-EEEEEECTTHH.....HHHHHHHTTTSSEEE-SSHHHHHHHHH CS
  Ligase_CoA 100 keakaegrelpvvarvaGteadpqelseqakaleeagveiasskaqalraakav 153
                 k  +     +p+v r++Gt +      e++ +le++++e + +++ +++a+kav
  CCG91606.1 344 KTHR---PSIPLVIRLEGTRVK-----EGKIILENSSLEYLFADDLEDAARKAV 389
                 ****...***************.....99**********999999999998875 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.1   1.1e-13   4.1e-10      10     222 .]       3     225 ..       1     225 [. 0.80

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1.1e-13
  ATP-grasp_5  10 Lteaeakelleaygipvvetrlassaeeaveaaeei.gypvvlKivspd.ilh.....KtdvgGvrlnlkdaeevraaaeeilervkeks....pear 96 
                  L e+ akell   gipv++  +a+++e+a ++a ++ + p v+K +++              gGv++  +++eev++ a++++ ++  ++    +++ 
   CCG91606.1   3 LLEYAAKELLVKEGIPVAQYGVAETPEAAFDIACKLaKRPLVVKAQIAAgGRGkgrflNGLEGGVKI-CQSPEEVKQIAQRMIGSILVTAqtgeQGQL 99 
                  789******************************9997889******955333311111555699999.99***********99987554322225566 PP

  ATP-grasp_5  97 iegvlVqemakrggrElivgvteDpvFGpvilfGl..GGtavevlkdvavalpplnstlareliertkaskllkg..vrgekkadlaaleellvrlsq 190
                  +++vlV e  +  + E+ ++++   +   ++l+G   GG+++e ++    +    +  l  + +   +a ++  +  +rg+   +l +l+++l  l +
   CCG91606.1 100 VKKVLVSESID-ISSEIYLSISYSHSTASLLLMGSraGGVEIEKIAVENPQAIVKKFVLPDYSLWDFQAREFGLDlgFRGK---ELVELSRILKSLYK 193
                  77777777766.899*******************75589999988888877777888888888877777776655227777...88888899988888 PP

  ATP-grasp_5 191 LvvdlpeIreldinPllveeeg.vvalDarirl 222
                    v++   + ++inPl +++e+ ++alDa+i++
   CCG91606.1 194 TFVKH-DASLCEINPLAMDRERkFWALDAKITI 225
                  88884.5799*********9666********97 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.5   7.9e-07    0.0028       6      87 ..       8     107 ..       5     121 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 7.9e-07
                 HHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT...........-EEEESSHHH....HHHHHHHHCTS-TTCCCC...SSEEEE CS
      GARS_A   6 akdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagK...........gvivakseee....alkavkeilekkkfGeag...ekvviE 86 
                 ak+ll k gip a+y + + pe+a ++  ++ ++ lVvKa+  a+g+           gv++++s ee    a +++ +il++ + Ge g   +kv++ 
  CCG91606.1   8 AKELLVKEGIPVAQYGVAETPEAAFDIACKLAKRPLVVKAQIAAGGRgkgrflnglegGVKICQSPEEvkqiAQRMIGSILVTAQTGEQGqlvKKVLVS 106
                 79*************************999999999***998888763344444444458999776662222666777888888888766122455665 PP

                 E CS
      GARS_A  87 e 87 
                 e
  CCG91606.1 107 E 107
                 5 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.8e-05      0.28       3      45 ..      14      56 ..      12     117 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.8e-05
                TTT--B-EEEEECCHH.HHHHHHHHH-SCEEEEESSS-CTTTTE CS
   ATP-grasp  3 klglpvprflaveske.eleeaaeelglpvvvKarrlgydGkGq 45
                k g+pv+++ ++e+ e +++ a++  + p+vvKa + +  G+G+
  CCG91606.1 14 KEGIPVAQYGVAETPEaAFDIACKLAKRPLVVKA-QIAAGGRGK 56
                679***********996788888888*******5.555566664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2925.54
//
Query:       CCG91607.1  [L=441]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3345.94
//
Query:       CCG91608.1  [L=310]
Description: Thioredoxin reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-48  165.4   0.3    1.9e-48  165.2   0.3    1.0  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    4.6e-20   72.1   0.1    7.9e-17   61.5   0.0    2.1  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    6.9e-19   68.2   0.5    8.6e-15   55.1   0.1    2.9  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    3.8e-06   26.3   2.1      0.068   12.4   0.1    3.2  4  Thi4            Thi4 family
    3.9e-06   26.7   4.9      0.089   12.4   0.0    3.3  3  DAO             FAD dependent oxidoreductase
    2.9e-05   23.4   9.4     0.0061   15.7   0.1    4.6  5  GIDA            Glucose inhibited division protein A
    3.6e-05   23.3   1.3     0.0024   17.3   0.0    2.6  3  FAD_oxidored    FAD dependent oxidoreductase
    8.4e-05   21.4   0.0       0.33    9.6   0.0    2.6  2  HI0933_like     HI0933-like protein
    9.9e-05   21.6   6.4    0.00026   20.2   0.2    3.4  4  FAD_binding_2   FAD binding domain
    0.00017   21.7   0.1    0.00055   20.1   0.0    1.9  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00082   18.3   1.7     0.0086   15.0   0.2    3.0  4  Trp_halogenase  Tryptophan halogenase
     0.0028   16.8   0.1      0.021   14.0   0.0    2.1  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
  ------ inclusion threshold ------
      0.097   11.9   0.4       0.55    9.4   0.1    2.2  2  FAD_binding_3   FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.2   0.3   1.4e-51   1.9e-48       2     294 .]       3     294 ..       2     294 .. 0.88

  Alignments for each domain:
  == domain 1  score: 165.2 bits;  conditional E-value: 1.4e-51
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.........HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias.........evvkklnqgielllgeevvkidpgkkkvklekk 90 
                  +v++iG+G AG++aa++la+a++  +lv  +g  ++g    ++ ++++++++  ++         ++ +++++ +++l  ++ ++ d + k+vk+   
   CCG91608.1   3 EVIIIGSGCAGWTAAIYLARAKLSPLLV--TGSEPGGLLTTTTLVENYPGFPLGIQgpelmeamrKQAERFGTRVKYLSVVTDFQCDGKIKRVKI--- 95 
                  69**************************..77788998999999999999999888999998888888889999998888444444333344444... PP

                  ECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  91 kegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaa 188
                     d e ++ +++v+A G++pr+l +pG+ e  +k+v++++++++     +++ +vvvGgG  ++E A +l+++++ v+lv++r+ l      + s +
   CCG91608.1  96 ---DDEWLETKAVVIAVGARPRKLSVPGESELETKGVSYCATCDGALPVFRNQPLVVVGGGDSACEEALYLTRFASVVYLVHRRNALR-----ASSIM 185
                  ...4568****************************************************************************99996.....55666 PP

                  HHHHHHHTTEEEEESCEEEEEEETTE.EEE.EEETTSCE.....EEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGCT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.xxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 189 leealekeGvevklgtsvkeidgnge.kle.vvledgee.....idadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDvag 279
                  +e++l++ +++v ++++++++ + ++ +++ vvl + +e     ++++ ++va+G  p+t+++  + ++elde+  i++ e  rt++ g++a+GD++ 
   CCG91608.1 186 AERVLNEPKIKVIWNSVIEKVLDPKQdRVTgVVLRNVKEeitnlLECRGLFVAIGHVPNTQIF--EGKIELDEKKLIKTTEGTRTSMAGVFACGDCV- 280
                  66777777***********9988777777787777766668888*****************96..899*****************************. PP

                  ECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxx RF
  Pyr_redox_2 280 gkggpelaqaAvqqG 294
                   +g++++a++A  +G
   CCG91608.1 281 -DGVYRQAVTAAGMG 294
                  .9*********9987 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0008       1.1       1      26 [.       5      30 ..       5      37 .. 0.91
   2 !   61.5   0.0   5.7e-20   7.9e-17      79     305 .]      56     277 ..      52     277 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0008
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledyli 26
                 iIiG G aG +aai l +a+l+ +l+
   CCG91608.1  5 IIIGSGCAGWTAAIYLARAKLSPLLV 30
                 8********************87776 PP

  == domain 2  score: 61.5 bits;  conditional E-value: 5.7e-20
  Pyr_redox_3  79 srkealeYlrevaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeek.lvkhyskvk....efhkyagqkvvViG 171
                  ++ e++e +r+ a++f  ++k+ + V++ + +++  +v+ + e +e+k v+iA G   +P+kl++pGe++   k  s+      ++  +++q +vV+G
   CCG91608.1  56 QGPELMEAMRKQAERFGTRVKYLSVVTDFQCDGKIKRVKIDDEWLETKAVVIAVGA--RPRKLSVPGESElETKGVSYCAtcdgALPVFRNQPLVVVG 151
                  6778889999*********************************************9..**********9743333444431122445688******** PP

  Pyr_redox_3 172 gknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeey...kvk...tedgkkvevkddvvl 263
                  g++Sa++ Al l r  + V +v+r++ +++++         ++ +r+ +   e kikv+ n+ ++++ ++++      v    +e+ +++ +    ++
   CCG91608.1 152 GGDSACEEALYLTRFASVVYLVHRRNALRASS---------IMAERVLN---EPKIKVIWNSVIEKVLDPKQDRvtgVVLrnvKEEITNLLECRGLFV 237
                  *************************9877764.........33344322...3456666666666665443321011222111233334444556677 PP

  Pyr_redox_3 264 atGykpdlsflkkslfeldedgrpvlteeteetnvpglflaG 305
                  a+G  p++++++  ++elde++ ++ te t  t + g+f +G
   CCG91608.1 238 AIGHVPNTQIFE-GKIELDEKKLIKTTEGT-RTSMAGVFACG 277
                  7**********9.9****999988877766.5779****998 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00068      0.94       2      79 ..       4      96 ..       3      98 .. 0.86
   2 !   55.1   0.1   6.2e-18   8.6e-15       2      79 ..     147     220 ..     146     225 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00068
                EEEECSSHHHHHHHHHHHHTT...............SEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelg...............kkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsedgvesvklk 79
                v+++G+G  g  +A +la+ +                 +t+ve+ + +     ++e+ ++++++ e+ g +v + ++v+ ++ +++ +++vk+ 
  CCG91608.1  4 VIIIGSGCAGWTAAIYLARAKlspllvtgsepggllTTTTLVENYPGFPlGIQGPELMEAMRKQAERFGTRVKYLSVVTDFQCDGK-IKRVKID 96
                89***************6665556666667777787899******99988***************************999998887.8888875 PP

  == domain 2  score: 55.1 bits;  conditional E-value: 6.2e-18
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEECSEEEEEEEEETTS.EEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekn.gievllntkveeiegsedg.vesvklk 79 
                 +vvvGgG++++E+A +l+++++ V++v+r++ l+      as+i++e++ ++ +i+v++n+++e++   ++  v++v+l+
  CCG91608.1 147 LVVVGGGDSACEEALYLTRFASVVYLVHRRNALR------ASSIMAERVLNEpKIKVIWNSVIEKVLDPKQDrVTGVVLR 220
                 79********************************......******9997777*************9544455****998 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   6.7e-05     0.092      19      42 ..       3      25 ..       1      48 [. 0.86
   2 ?   -1.1   0.0      0.67   9.2e+02      18      39 ..     145     166 ..     139     178 .. 0.79
   3 !   12.4   0.1   4.9e-05     0.068      94     139 ..     176     221 ..     165     233 .. 0.80
   4 ?   -2.4   0.0       1.6   2.2e+03     198     224 ..     253     282 ..     239     294 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.7e-05
                EEEEE--SHHHHHHHHHHHHCTTS CS
        Thi4 19 DvvivGaGssGLtaayylakkpdl 42
                +v+i+G+G +G taa yla++ +l
  CCG91608.1  3 EVIIIGSGCAGWTAAIYLARA-KL 25
                79*****************98.44 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.67
                 EEEEEE--SHHHHHHHHHHHHC CS
        Thi4  18 sDvvivGaGssGLtaayylakk 39 
                 + +v+vG+G s    a yl++ 
  CCG91608.1 145 QPLVVVGGGDSACEEALYLTRF 166
                 5689******999999999875 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 4.9e-05
                 SEHHHHHHHHHHHHHTSTTEEEEESEEEEEEEEETBTEEEEEEEEE CS
        Thi4  94 kdaalftstllskvlqlanvkllnavaveDlivregegvaGvvinw 139
                 ++a  + s ++ +vl+ + +k++   ++e ++  ++++v+Gvv+  
  CCG91608.1 176 RNALRASSIMAERVLNEPKIKVIWNSVIEKVLDPKQDRVTGVVLRN 221
                 3455556666679******************99888*******975 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.6
                 HHHHHHHH...HHECEEETTEEE-THHHHH CS
        Thi4 198 ekaedaiv...kktrevvpnlyvaGmevae 224
                 e  e++++   ++tr  + +++++G  v  
  CCG91608.1 253 ELDEKKLIkttEGTRTSMAGVFACGDCVDG 282
                 556777774446778888888888866554 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.8   8.2e-05      0.11       2      24 ..       4      31 ..       3      48 .. 0.78
   2 !   12.4   0.0   6.5e-05     0.089     145     206 ..      57     116 ..      50     135 .. 0.78
   3 ?    2.2   0.1     0.079   1.1e+02       2      37 ..     147     183 ..     146     192 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.2e-05
                EEEECTSHHHHHHHHHHHHTT.....EE CS
         DAO  2 vviiGGGiiGlstAyeLarrg.....Vt 24
                v+iiG+G +G ++A +Lar++     Vt
  CCG91608.1  4 VIIIGSGCAGWTAAIYLARAKlspllVT 31
                9****************99866555555 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 6.5e-05
                 HHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEEE...EEEEEEE--GGGHH.H CS
         DAO 145 pakltaalaraaealGveilegtevtgleeedgkvwgve.rttpgend...aadavVnaaGawsd.l 206
                   +l+ a++++ae+ G ++ + + vt+++  dgk+++v+ +      d   + +avV+a Ga  + l
  CCG91608.1  57 GPELMEAMRKQAERFGTRVKYLSVVTDFQC-DGKIKRVKiD------DewlETKAVVIAVGARPRkL 116
                 5689************************65.7899999432......12334599******987744 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.079
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGG CS
         DAO   2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaS 37 
                 +v++GGG   +  A++L+r    V l+ +++ +  ++S
  CCG91608.1 147 LVVVGGGDSACEEALYLTRFAsvVYLVHRRNALR-ASS 183
                 59***************87645999999996554.554 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   4.4e-06    0.0061       1      29 [.       3      31 ..       3      47 .. 0.88
   2 ?   -1.0   0.0      0.51     7e+02     126     151 ..      88     112 ..      73     131 .. 0.71
   3 ?    4.4   0.1     0.012        16       2      30 ..     147     174 ..     146     189 .. 0.84
   4 ?    3.2   0.1     0.027        37      98     137 ..     182     223 ..     176     274 .. 0.72
   5 ?    3.5   0.2     0.022        30     355     391 ..     270     308 ..     253     309 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.4e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLit 29
                +vi+iG G AG  AA+ +ar+ ++ lL+t
  CCG91608.1  3 EVIIIGSGCAGWTAAIYLARAKLSPLLVT 31
                59*********************999995 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.51
                 TEEEEEEETTS-EEEECEEEE--TT- CS
        GIDA 126 kkvkgvvtedgetikakavviatGtf 151
                 +k+k v+  d+e +++kavvia G+ 
  CCG91608.1  88 GKIKRVKI-DDEWLETKAVVIAVGAR 112
                 56666655.5678999********84 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.012
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLith 30 
                 ++V+GgG + ce Al + r    v L+ h
  CCG91608.1 147 LVVVGGGDSACEEALYLTRFASVVYLV-H 174
                 69*****************99999998.3 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.027
                 HHHHHHHHHTSTTEEEEES-EEE..EEECTTEEEEEEETTS- CS
        GIDA  98 skevteklenepnleiieeevee..liveekkvkgvvtedge 137
                 s+ + e++ nep++++i ++v e  l++++++v+gvv+++ +
  CCG91608.1 182 SSIMAERVLNEPKIKVIWNSVIEkvLDPKQDRVTGVVLRNVK 223
                 56799999********999986534777889****9887643 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.022
                 SBTEEE-CG.GGTB.-SHHHHHHHHHHHHHHHHHHHCTS CS
        GIDA 355 vkgLflAGq.inGt.eGYeEaaaqGllAGinaarkakgk 391
                   g+f++G+ + G+    + aa++G++A+i a r++++k
  CCG91608.1 270 MAGVFACGDcVDGVyRQAVTAAGMGCMAAIDAERYLREK 308
                 45777777734566433567888***********99987 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.8e-06    0.0024       1      42 [.       3      43 ..       3     125 .. 0.81
   2 ?   -1.9   0.0       1.2   1.6e+03       2      33 ..     147     178 ..     147     179 .. 0.85
   3 ?    4.3   0.1     0.015        21      92     130 ..     185     224 ..     177     233 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.8e-06
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsgl 42
                  +v+++G+g aG +AAi  ara  + lLv      GGllt   
    CCG91608.1  3 EVIIIGSGCAGWTAAIYLARAKLSPLLVT-GSEPGGLLTTTT 43
                  59*************************96.567899988654 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergv 33 
                   +vVvGGg + +  A+   r    v Lv++r+ 
    CCG91608.1 147 LVVVGGGDSACEEALYLTRFASVVYLVHRRNA 178
                   59*****9999999999999999999988875 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.015
  FAD_oxidored  92 vleemlaeagvtvllntrlvevek.egkriesvtveskeg 130
                   ++e +l+e++++v+ n+++++v   +++r+++v++++ ++
    CCG91608.1 185 MAERVLNEPKIKVIWNSVIEKVLDpKQDRVTGVVLRNVKE 224
                   567888*************9999854579******88663 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1   0.00041      0.56       2      29 ..       3      30 ..       2      37 .. 0.86
   2 !    9.6   0.0   0.00024      0.33     102     164 ..      51     111 ..      47     119 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00041
                 SEEEE--SHHHHHHHHHHHHTT--EEEE CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlll 29
                 +vi+iG G AG  aAi +a+++ + ll+
   CCG91608.1  3 EVIIIGSGCAGWTAAIYLARAKLSPLLV 30
                 79****************9998877665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00024
                  EETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 102 FpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                  Fp   +  ++++a+ k++++ g ++++ + v++++  ++++ rvk+ ++e le++++v+A+G 
   CCG91608.1  51 FPLGIQGPELMEAMRKQAERFGTRVKYLSVVTDFQC-DGKIKRVKI-DDEWLETKAVVIAVGA 111
                  66677778999***********************66.6777*****.9*************97 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2   1.9e-07   0.00026       2      36 ..       4      38 ..       3      45 .. 0.88
   2 ?    0.2   0.0      0.22   3.1e+02     138     206 ..      55     116 ..      35     139 .. 0.64
   3 ?   -0.7   0.0      0.42   5.8e+02     148     185 ..     186     225 ..     168     253 .. 0.68
   4 ?    1.4   0.2     0.093   1.3e+02     379     410 ..     263     288 ..     260     295 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.9e-07
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36
                   vi+iGsG AG +AA+ +a+a l+ ++v+  ++ g+
     CCG91608.1  4 VIIIGSGCAGWTAAIYLARAKLSPLLVTGSEPGGL 38
                   9**************************99998544 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.22
                    .HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG.. CS
  FAD_binding_2 138 vtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgral 206
                    ++g++l++++ ++a++ g+++     ++++ + dg++  + +       ++ ++ kavv+a g+ +r+l
     CCG91608.1  55 IQGPELMEAMRKQAERFGTRVKYLSVVTDF-QCDGKIKRVKID------DEWLETKAVVIAVGARPRKL 116
                    578999999999996666666655555555.335555555444......44455678888888888733 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.42
                    HHHHHTCT.EEEEESEEEEEEEE.CTTEEEEEEEEETTTT CS
  FAD_binding_2 148 vesarkag.vdfqerteadeLiv.edgrvtGavvenpesg 185
                    +e++++ + +++  +  +++++  +++rvtG+v++n +++
     CCG91608.1 186 AERVLNEPkIKVIWNSVIEKVLDpKQDRVTGVVLRNVKEE 225
                    4555444457777777777776634569999999965443 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.093
                    ETTSBESTTEEESSBTEEE-STCEESSSSTTS CS
  FAD_binding_2 379 dengrvldadgqpipGLYAaGevaaggvhgan 410
                    +e       + +  +G +A+G +  g +  a 
     CCG91608.1 263 TEG------TRTSMAGVFACGDCVDGVYRQAV 288
                    444......44599*********977766655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     4e-07   0.00055       1      42 [.       6      50 ..       6      71 .. 0.85
   2 ?   -1.9   0.0       2.9     4e+03       1      17 [.     149     165 ..     149     184 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE....TT CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev....pg 42
                   I+G+G +G +aA +La+a+++ ll+ +++ +GG +++ ++    pg
     CCG91608.1  6 IIGSGCAGWTAAIYLARAKLSPLLV-TGSEPGGLLTTTTLvenyPG 50
                   9**********************99.9********99987644444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.9
                    EE--SHHHHHHHHHHHC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLak 17 
                    +vG+G s++  A +L++
     CCG91608.1 149 VVGGGDSACEEALYLTR 165
                    89999887766666665 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   6.2e-06    0.0086       2      22 ..       4      24 ..       3      36 .. 0.87
   2 ?   -1.6   0.0      0.68   9.4e+02     158     208 ..      62     110 ..      54     117 .. 0.69
   3 ?   -0.7   0.0      0.35   4.8e+02       2      22 ..     147     167 ..     146     178 .. 0.82
   4 ?   -0.4   0.0      0.29     4e+02      45      70 ..     241     266 ..     235     274 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.2e-06
                    EEEE--SHHHHHHHHHHHHHT CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakal 22
                    ++i+G G aGw+aA++la+a 
      CCG91608.1  4 VIIIGSGCAGWTAAIYLARAK 24
                    99****************986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.68
                     HHHHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SG CS
  Trp_halogenase 158 kfLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsG 208
                     + +r+ ae+ G ++    +v ++ + dg++++++++d+  +e   ++ + G
      CCG91608.1  62 EAMRKQAERFGTRVKY-LSVVTDFQCDGKIKRVKIDDEW-LETKAVVIAVG 110
                     5688888888865544.4445677779999999996654.66665555555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.35
                     EEEE--SHHHHHHHHHHHHHT CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakal 22 
                     +v+vGGG ++   A +l +  
      CCG91608.1 147 LVVVGGGDSACEEALYLTRFA 167
                     69************9999987 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.29
                     --THHHHTHHHHT--HHHHCHHCT-E CS
  Trp_halogenase  45 tipsirkllrlLgideeeflreteat 70 
                      +p+++ +   +++de++++++te+t
      CCG91608.1 241 HVPNTQIFEGKIELDEKKLIKTTEGT 266
                     699********************987 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       4.3   5.9e+03     193     203 ..       3      13 ..       2      23 .. 0.65
   2 !   14.0   0.0   1.5e-05     0.021     106     229 ..      68     180 ..      59     184 .. 0.69
   3 ?   -0.2   0.0       0.3   4.2e+02     113     160 ..     197     243 ..     185     250 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.3
  K_oxygenase 193 riaVvGsGqSa 203
                  +++++GsG  +
   CCG91608.1   3 EVIIIGSGCAG 13 
                  67788888655 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.5e-05
  K_oxygenase 106 asqleeqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvGtep...kiPevleklegkervvHsseylerkeellakkriaVvGsG 200
                  a+++ ++v++ + v++ + d +    + +v+      + e le++++v++vG +p   ++P   e le ++ v   ++         +++ ++VvG+G
   CCG91608.1  68 AERFGTRVKYLSVVTDFQCDGK----IKRVKI-----DDEWLETKAVVIAVGARPrklSVPGESE-LE-TKGVSYCATCDGAL-PVFRNQPLVVVGGG 153
                  4555555555555555555553....445665.....46899**********9984334777766.44.46777777777776.4789999******* PP

  K_oxygenase 201 qSaaeifedllrrqkkvelklvtrseale 229
                   Sa e +  l+r ++   + lv r++al+
   CCG91608.1 154 DSACEEALYLTRFAS--VVYLVHRRNALR 180
                  *****8887776544..677777777765 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.3
  K_oxygenase 113 vrfgeeveevepdeeeeeelltveskd.aegeeeelearnlvlgvGtep 160
                  v +++ +e+v   +++  ++  v  ++ +e+ ++ le+r l +++G  p
   CCG91608.1 197 VIWNSVIEKVLDPKQD--RVTGVVLRNvKEEITNLLECRGLFVAIGHVP 243
                  5566777777666654..2444444443566667788888888888777 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1    0.0004      0.55       3      23 ..       3      23 ..       2      34 .. 0.88
   2 ?   -0.8   0.0      0.51   7.1e+02     101     141 ..      54      94 ..      40     106 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0004
                   EEEEE--SHHHHHHHHHHHHT CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLsea 23
                   +V+I+G+G aG ++a  L++a
     CCG91608.1  3 EVIIIGSGCAGWTAAIYLARA 23
                   79****************998 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.51
                    E--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCE CS
  FAD_binding_3 101 vypqteleriLvehaeerglqvrfktevesleqdeegvtae 141
                     +  +el  +++++ae+ g++v+    v+ ++ d++  + +
     CCG91608.1  54 GIQGPELMEAMRKQAERFGTRVKYLSVVTDFQCDGKIKRVK 94 
                    5666789999**********999888888887777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 2118.87
//
Query:       CCG91609.1  [L=64]
Description: hypothetical protein MFUM_170022 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 502.03
//
Query:       CCG91610.1  [L=443]
Description: Trigger factor [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-27   94.8   7.4    5.6e-27   94.8   7.4    3.1  4  Trigger_N       Bacterial trigger factor protein (TF)
    3.3e-19   69.5  12.7    3.3e-19   69.5  12.7    2.7  3  Trigger_C       Bacterial trigger factor protein (TF) C-termi
    2.4e-05   24.6   0.0    8.1e-05   22.9   0.0    1.9  1  FKBP_C          FKBP-type peptidyl-prolyl cis-trans isomerase
     0.0042   17.2   0.5      0.053   13.6   0.2    2.7  2  ARL2_Bind_BART  The ARF-like 2 binding protein BART
  ------ inclusion threshold ------
      0.084   12.9   2.9       0.13   12.3   2.9    1.2  1  DUF4778         Domain of unknown function (DUF4778)
       0.22   11.6   2.6        1.3    9.1   0.3    3.0  3  SurA_N          SurA N-terminal domain


Domain annotation for each model (and alignments):
>> Trigger_N  Bacterial trigger factor protein (TF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   7.4   1.9e-30   5.6e-27       4     140 ..      16     155 ..      14     156 .. 0.95
   2 ?    0.2   1.6       0.3   8.8e+02      61      84 ..     349     372 ..     273     399 .. 0.62
   3 ?    0.3   1.7      0.27   8.2e+02      61      86 ..     349     374 ..     318     431 .. 0.59
   4 ?   -1.0   0.0      0.66     2e+03      57      79 ..     409     431 ..     398     442 .. 0.62

  Alignments for each domain:
  == domain 1  score: 94.8 bits;  conditional E-value: 1.9e-30
                 EEEEEETTEEEEEEEE-HHHCHHHHHHHHHHHHTTS-BTTC-TT---CCCHHHHCTCCCHHHHHHHHHHCCCCCCCCCS..-EE.EE.E.E..EETTC. CS
   Trigger_N   4 tvekleglkvkltvevpaeevekavekalkklakkvkipGFRkGkvPrsiiekrygkevleealeellnealeeaieeeklepvgqpei.e..leegkd 99 
                 +ve ++g++++l +evp ee+ ++ ek + ++akk+k+ GFR Gk+P++++ek y+ke+  +  +ell+ ++e+ai+++++e+v+  ++ +  +++g++
  CCG91610.1  16 KVEDIKGCRKRLYIEVPFEETVPEREKIVLDFAKKAKVAGFRVGKAPKEVVEKIYKKEIDRKTENELLKLVYEKAIKAHNIEVVALIDLeNvrYQPGEP 114
                 68889899*************************************************************************988777775345899*** PP

                 EEEEEEEEE--EEEE.XCCCSEEEEEXHHHHHHHHHHHHHH CS
   Trigger_N 100 leftvevevkPevelgdykglevekeevevtdeevdeelee 140
                 ++f++ v++kP++ l++y+++ v ke++e++ ee+d+++e+
  CCG91610.1 115 FSFSAIVDTKPDFVLPKYTDIPVPKEDTEIKPEEIDQAIES 155
                 ***************************************97 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.3
                 CCHHHHHHHHHHCCCCCCCCCS.. CS
   Trigger_N  61 evleealeellnealeeaieeekl 84 
                 +vlee  +e+ ++al +a ++ kl
  CCG91610.1 349 AVLEEKKDEIYSKALIQARRKTKL 372
                 244444444444444444444443 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.27
                 CCHHHHHHHHHHCCCCCCCCCS..-E CS
   Trigger_N  61 evleealeellnealeeaieeeklep 86 
                 +vlee  +e+ ++al +a ++ kl+ 
  CCG91610.1 349 AVLEEKKDEIYSKALIQARRKTKLHF 374
                 35555555555555555555555431 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.66
                 HCTCCCHHHHHHHHHHCCCCCCC CS
   Trigger_N  57 rygkevleealeellnealeeai 79 
                 ++ k++ +e l+ ++ne++++ +
  CCG91610.1 409 QFLKKLPSEELNAIVNEVFNQKV 431
                 44455556666666666666433 PP

>> Trigger_C  Bacterial trigger factor protein (TF) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.6      0.24   7.1e+02       6      41 ..      63      98 ..      60     105 .. 0.79
   2 ?   -0.8   0.2      0.47   1.4e+03     106     125 ..     139     158 ..     137     163 .. 0.85
   3 !   69.5  12.7   1.1e-22   3.3e-19       4     162 .]     284     437 ..     283     437 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.24
                HHHHCCCCHHHHHHHHHHHHHCCCHCCCGCGEEEEE CS
   Trigger_C  6 kedlrkqleeekeeatkeelkealldkLvekaeidi 41
                ke ++k  ++e +++t++el + + +k++++++i++
  CCG91610.1 63 KEVVEKIYKKEIDRKTENELLKLVYEKAIKAHNIEV 98
                566777778888888888888888888888888876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.47
                 HTT----HHHHHHHHHHHCC CS
   Trigger_C 106 eekievteeelkeeleelas 125
                 +e  e++ ee+++++e + +
  CCG91610.1 139 KEDTEIKPEEIDQAIESIME 158
                 57889999******999876 PP

  == domain 3  score: 69.5 bits;  conditional E-value: 1.1e-22
                 HHHHHHCCCCHHHHHHHHHHHHHCCCHCCCGCGEEEEE-HHHHHHHHHHHHHHHHHCT...TSSHHCHHHHHCTHCCCHCHHCHHHHHHHHHHHHHHHH CS
   Trigger_C   4 eLkedlrkqleeekeeatkeelkealldkLvekaeidiPeslveeeidrllrqakqqleqqGldleeylelsgsseeelreelkeeAekrVklgLvlee 102
                 e+ e ++k++++ ke +++++ k +++d L+   ++++Pes +e+e++ l+r++  +++q+G +l+ +    +++++e   ++  +A+++ kl ++lee
  CCG91610.1 284 EFMEAIEKSIKQSKESQARSRQKLKIIDYLLSSSDFSLPESEIEKEAEWLFRKVVVDMQQKGTPLAVL----EEKKDEIYSKALIQARRKTKLHFLLEE 378
                 78899*****************************************************9999999985....46788888888899************* PP

                 HHHHTT----HHHHHHHHHHHCCCTTSXHHHHHHHHHHXHHHHHHHHHHHHHHHHHHHCT CS
   Trigger_C 103 iakeekievteeelkeeleelasqygmepeevkeflkkneqlsalkedileekvvdllle 162
                 iak+e+i+vt ++l  +++++a +  mep+++ + l  +e+l+a+ ++++++kv+d+lle
  CCG91610.1 379 IAKKENISVTKDDLAMAIHNQAIKLRMEPKQFLKKL-PSEELNAIVNEVFNQKVLDFLLE 437
                 ************************************.5566678*************996 PP

>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.7e-08   8.1e-05       4      71 ..     170     242 ..     168     260 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.7e-08
                 BB-TTCEEEEEEEEEETTSSEEEEH......CCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTT CS
      FKBP_C   4 eakegdtVtvhykgkledgkvfdss......rsrakplefkvGsgqvikGfeealegmkvGekrtltippelaY 71 
                 ++++gd+V v y+g+l d++ +++       + ++++  + + +g +++Gf ++l gm++G+ +t+ i +++ +
  CCG91610.1 170 TVANGDFVVVSYVGTL-DNQPLAKLlptagvMAKGENQWILIKEGVFLPGFTDQLIGMEAGQSKTFAISFPEDW 242
                 4789************.555555553433555599*********************************998765 PP

>> ARL2_Bind_BART  The ARF-like 2 binding protein BART
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   1.8e-05     0.053      58     101 ..     269     320 ..     256     331 .. 0.84
   2 ?    0.3   0.0      0.24   7.1e+02      11      30 ..     420     439 ..     383     441 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.8e-05
                     HHH.HHTT-.SSS--THHHHH..........SS-GGSSHHHHHHHHGGG-HH CS
  ARL2_Bind_BART  58 les.lleei.gismeefleal......ekslsekkevakkvfeqllaadDFe 101
                     l++ l +e+ g++++ef+ea+      +k+++++++++ k++++ll+ +DF+
      CCG91610.1 269 LSDeLTQEVaGLNKKEFMEAIeksikqSKESQARSRQKLKIIDYLLSSSDFS 320
                     5555999999***********998877666666667789999********96 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.24
                     HHTS-HHHHHHHHHHHHHHH CS
  ARL2_Bind_BART  11 eflaspefkspvqeFidenc 30 
                     + +  ++f++ v +F+ e++
      CCG91610.1 420 NAIVNEVFNQKVLDFLLEKA 439
                     45667778888888877776 PP

>> DUF4778  Domain of unknown function (DUF4778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.9   4.2e-05      0.13     141     271 ..     274     401 ..     261     429 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.2e-05
     DUF4778 141 lakragigsesaarqngkRrrkelkekedeekselneiaelldgqdaa...ervkkeleakslpnseglgesraslelskrskvrangsaskalkelss 236
                 + ++ag++++   ++   +++k++ke +   +++l+ i++ll++ d +   ++++ke e  +  +  ++++  ++l + ++ k           + ++ 
  CCG91610.1 274 TQEVAGLNKKEF-MEAIEKSIKQSKESQARSRQKLKIIDYLLSSSDFSlpeSEIEKEAEWLFRKVVVDMQQKGTPLAVLEEKKD-----EIYSKALIQA 366
                 556677777776.88889999999999999999999999999999954111333333333333444444444444444333332.....2333344557 PP

     DUF4778 237 erakelreLirklnervglerdlekLleAlkkldL 271
                 +r+++l+ L++++ +++ + + +++L+ A+++  +
  CCG91610.1 367 RRKTKLHFLLEEIAKKENISVTKDDLAMAIHNQAI 401
                 99****************************86444 PP

>> SurA_N  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.16   4.7e+02      65      87 ..     142     164 ..     137     175 .. 0.78
   2 ?   -2.1   0.0       1.3   3.9e+03      67      83 ..     268     284 ..     240     309 .. 0.53
   3 ?    9.1   0.3   0.00045       1.3      55      97 ..     375     417 ..     324     431 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.16
      SurA_N  65 irvddeelnqaiaeiAkeNkltl 87 
                  +++ ee++qai++i ++  + +
  CCG91610.1 142 TEIKPEEIDQAIESIMESKATFV 164
                 57899**********98766555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
      SurA_N  67 vddeelnqaiaeiAkeN 83 
                 v  +el q +a + k+ 
  CCG91610.1 268 VLSDELTQEVAGLNKKE 284
                 44444444444333322 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00045
      SurA_N  55 iqlqeaektgirvddeelnqaiaeiAkeNkltldqlraalaed 97 
                 +  + a+k +i+v+ ++l +ai++ A + +++ +q+ ++l ++
  CCG91610.1 375 LLEEIAKKENISVTKDDLAMAIHNQAIKLRMEPKQFLKKLPSE 417
                 55678*******************************9999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1082  (0.0603492); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3081.80
//
Query:       CCG91611.1  [L=216]
Description: ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) (Caseinolytic protease) (Protease Ti) (Heat shock protein F21.5) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-86  287.4   0.0    5.5e-86  287.1   0.0    1.0  1  CLP_protease  Clp protease


Domain annotation for each model (and alignments):
>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.1   0.0   3.1e-90   5.5e-86       2     181 ..      19     198 ..      18     199 .. 0.99

  Alignments for each domain:
  == domain 1  score: 287.1 bits;  conditional E-value: 3.1e-90
                   SSSECHHHHHHHHTTTEEEEES-BSHHHHHHHHHHHHHHHHH-SSS-EEEEEEE--B-HHHHHHHHHHHHHSSS-EEEEEEEEEETHHHHHHHTS-T CS
  CLP_protease   2 kgeraydiysrllkeriiflgseiddevankiiaqLllLeaedpdkdillyinspGGsvtaglaIydtmqyikpdvsticlGlaaSmgslllaagek 98 
                   +ger ydi+srllk+ri+f+g++idd++an +iaqLl+L+ edp+kdi+lyi+spGG vtag+aIydtmq++++dv t+c+G+aaSm+++llaag+k
    CCG91611.1  19 RGERGYDIFSRLLKDRIVFIGTPIDDNIANLVIAQLLFLQMEDPKKDISLYIHSPGGYVTAGMAIYDTMQFLSCDVNTYCIGQAASMAAVLLAAGTK 115
                   7899********************************************************************************************* PP

                   TGEEEETTEEEEES-TEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCSTEEEEHHHHHHHTSSSEE-SS CS
  CLP_protease  99 gkRfalpnarimihqPlggaqgqasdieieaeellkikerlneilakhtgqslekiekdldrdtflsaeeAveyGLideviek 181
                   gkRfalpnarimihqPlggaqgqasdi+i+a+e+l++k+ lneil+ ht+q++e++ekd+drd+f+sae+A++yGLidev+++
    CCG91611.1 116 GKRFALPNARIMIHQPLGGAQGQASDISIQAQEILRTKRLLNEILSYHTKQPIERLEKDTDRDFFMSAEDAKAYGLIDEVVKT 198
                   ********************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1454.69
//
Query:       CCG91612.1  [L=412]
Description: ATP-dependent Clp protease ATP-binding subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-47  160.4   0.0    8.1e-47  159.5   0.0    1.4  1  AAA_2            AAA domain (Cdc48 subfamily)
    9.9e-19   67.0   2.9    3.6e-18   65.2   2.9    2.1  1  zf-C4_ClpX       ClpX C4-type zinc finger
    4.3e-15   56.3   0.0    1.1e-14   55.0   0.0    1.7  1  AAA              ATPase family associated with various cellul
    1.4e-13   50.7   1.3    1.4e-13   50.7   1.3    2.0  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
      9e-06   25.7   0.0    5.5e-05   23.2   0.0    2.3  1  AAA_5            AAA domain (dynein-related subfamily)
    1.1e-05   25.8   0.4    7.7e-05   23.0   0.1    2.4  1  AAA_22           AAA domain
    1.6e-05   24.4   0.2     0.0028   17.1   0.0    3.4  4  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0001   22.1   0.0     0.0049   16.6   0.0    2.5  1  Sigma54_activat  Sigma-54 interaction domain
    0.00028   20.7   0.2     0.0044   16.8   0.2    2.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00063   18.9   0.1     0.0012   17.9   0.1    1.5  1  MCM              MCM P-loop domain
    0.00072   19.7   0.0     0.0021   18.2   0.0    1.7  1  Sigma54_activ_2  Sigma-54 interaction domain
     0.0013   18.0   0.1     0.0063   15.8   0.0    2.1  2  TIP49            TIP49 P-loop domain
     0.0021   17.2   0.2     0.0048   16.0   0.2    1.6  1  T2SSE            Type II/IV secretion system protein
     0.0026   17.3   0.0     0.0056   16.2   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
     0.0036   17.1   0.0     0.0065   16.2   0.0    1.4  1  AAA_24           AAA domain
      0.004   17.5   0.1      0.012   16.0   0.0    1.7  1  AAA_16           AAA ATPase domain
     0.0048   16.7   0.0     0.0084   15.9   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
     0.0066   17.0   0.0      0.022   15.3   0.0    1.9  2  ABC_tran         ABC transporter
     0.0099   15.9   0.1      0.031   14.3   0.0    1.9  1  AAA_14           AAA domain
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.021   14.7   0.0    1.5  1  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.011   15.8   0.0      0.022   14.8   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.011   15.7   0.7       0.48   10.4   0.0    3.4  3  RBD-FIP          FIP domain
      0.012   15.1   0.2      0.047   13.1   0.0    2.0  3  TniB             Bacterial TniB protein
      0.015   14.7   0.7      0.091   12.1   0.0    2.3  3  ATPase           KaiC
      0.027   14.3   0.8       0.56    9.9   0.0    2.7  3  DEAD             DEAD/DEAH box helicase
      0.028   14.3   0.0      0.092   12.7   0.0    1.9  1  NACHT            NACHT domain
      0.031   14.0   0.0      0.061   13.1   0.0    1.4  1  AAA_29           P-loop containing region of AAA domain
      0.062   13.3   0.0       0.16   12.0   0.0    1.7  1  ResIII           Type III restriction enzyme, res subunit
      0.074   13.2   0.0       0.15   12.2   0.0    1.5  1  AAA_33           AAA domain
      0.077   12.3   0.2          6    6.1   0.1    2.2  2  Septin           Septin
       0.13   12.8   0.0       0.34   11.4   0.0    1.8  1  AAA_18           AAA domain
       0.16   12.4   0.3        2.6    8.6   0.0    2.8  2  SAM_1            SAM domain (Sterile alpha motif)
       0.17   12.3   0.0       0.53   10.7   0.0    2.0  1  RNA_helicase     RNA helicase


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.5   0.0   1.5e-49   8.1e-47       2     171 .]     107     303 ..     106     303 .. 0.96

  Alignments for each domain:
  == domain 1  score: 159.5 bits;  conditional E-value: 1.5e-49
                 ----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----...---------H CS
       AAA_2   2 piisilllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgyvgaeegGivllDEidKihpk...essgadvSre 93 
                 ++ +ill+gptg+Gkt+lak+ a+ll+v    ++++ada++l+e    +e+ve+++ rl+++++++v+++e Giv++DEidKi++k   +s+++dvS+e
  CCG91612.1 107 EKTNILLVGPTGSGKTLLAKTFARLLDV----PFCIADATSLTEagyvGEDVESILLRLLQNANFDVKKAEMGIVYIDEIDKISRKsdsPSITRDVSGE 201
                 5789***********************8....*******************************************************999********* PP

                 HHHHHHHHHHH--EE-.........----.--EE-TT-EEEEEE--TTHHHHTTTS-S..............TTTTSGGG--HHHHHHTT--HHHHTT- CS
       AAA_2  94 gVqrdLLqileggtlt.........dkqg.rkvdtknilfImtgafgsskisdesrsk..............eeeeekkkeeveeelkkglipEllgRl 168
                 gVq++LL++leg+  +         ++q+  +++t+nilfI++gaf + +++ ++r++              ++++ + + e+e+++++g+ipE++gR+
  CCG91612.1 202 GVQQALLKMLEGTICNvppqggrkhPHQEfIRINTENILFICGGAFIGLDKIVARRRGkqvlgfqhalqtedSQSNGQLEVEPEDLISYGMIPEFVGRF 300
                 *************************99999****************8888888777778***********999999999******************** PP

                 -EE CS
       AAA_2 169 pei 171
                 p+i
  CCG91612.1 301 PVI 303
                 986 PP

>> zf-C4_ClpX  ClpX C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   2.9   6.6e-21   3.6e-18       3      38 ..       2      36 ..       1      37 [. 0.96

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 6.6e-21
  zf-C4_ClpX  3 CSFCgksesevkklIagpngvyICdeCvelcneiie 38
                CSFCg+++ ev+klI+gp gvyICd Cve c++i+e
  CCG91612.1  2 CSFCGRTQAEVRKLISGP-GVYICDACVEVCHSILE 36
                ******************.6**************98 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   2.1e-17   1.1e-14       1      97 [.     111     215 ..     111     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 2.1e-17
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTHHHHHHH.HHHHHH..HHTS...TSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsell.skyvgesekkir.elfkea..keka...kpsilfiDEidalaksr...sgseseeeervvnqL 89 
                 +ll+Gp G GKTllak  a+ l+v+f+  ++++l+   yvge  ++i   l+++a         +  i+ iDEid++ +++   s + + ++e v+++L
  CCG91612.1 111 ILLVGPTGSGKTLLAKTFARLLDVPFCIADATSLTeAGYVGEDVESILlRLLQNAnfD--VkkaEMGIVYIDEIDKISRKSdspSITRDVSGEGVQQAL 207
                 69*********************************667***99887751566777441..244467**************9988778999999****** PP

                 HHHHHHTT CS
         AAA  90 lteldgvk 97 
                 l++l+g  
  CCG91612.1 208 LKMLEGTI 215
                 ****9975 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   1.3   2.6e-16   1.4e-13       1      75 [.     309     387 ..     309     393 .. 0.96

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 2.6e-16
                    SCHHHHHHHHHH...HHHHHHHHSCT.TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSST CS
  ClpB_D2-small   1 LtkeelkkIvdl...alkklekrlke.rgvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelke 75 
                    Lt++el++I+++   a+ k++ +l + ++++l++ +ea+++ a+++ ++++GAR L+ +i++ ++d ++e++++ +++e
     CCG91612.1 309 LTEDELVRILTEpknAIIKQYIKLFAlDHIKLTFAKEAIRFFAQEAKKKKTGARALKNMIEKIMLDIMFELPSRTDIEE 387
                    89**********************99899********************************************999986 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     1e-07   5.5e-05       1      79 [.     110     187 ..     110     190 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1e-07
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.........G-SEEEEESGGG--H CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.........egeilvlDEveraes 79 
                 ++lLvGp+G+gK+ la+ +a++l  ++ +   t+ t++  +   +e          s+l r  +         e  i+++DE++++++
  CCG91612.1 110 NILLVGPTGSGKTLLAKTFARLLDVPFCIADATSLTEAGYVGEDVE----------SILLRLLQnanfdvkkaEMGIVYIDEIDKISR 187
                 689*************************999999888888887777..........66666666666888888999999999999985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   1.4e-07   7.7e-05       5     103 ..     108     185 ..     105     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.4e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhl 103
                 ++ ++++G++G+GKT+l++++++ l         ++++   +++s+t+   + +++ ++l            +ll+  +  ++++ + +++ iDE++++
  CCG91612.1 108 KTNILLVGPTGSGKTLLAKTFARLL---------DVPFCIADATSLTEAGYVGEDVESILL-----------RLLQNANFDVKKAEM-GIVYIDEIDKI 185
                 6789*********************.........899999999999977777777777776...........466666666666666.66666666666 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.38   2.1e+02       5      29 ..      66      90 ..      62      92 .. 0.83
   2 !   17.1   0.0   5.1e-06    0.0028      23      46 ..     109     132 ..     102     152 .. 0.89
   3 ?    1.4   0.0      0.32   1.8e+02     101     121 ..     168     188 ..     162     191 .. 0.88
   4 ?   -3.1   0.1       7.8   4.2e+03      35      76 ..     365     406 ..     363     408 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.38
  Mg_chelatase  5 vkGqeeakraleiaaaGgHnlllvG 29
                  v+Gq++ak+ l +a+  + + ++ G
    CCG91612.1 66 VIGQTNAKKILSVAVHNHYKRIFSG 90
                  89************98777776666 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 5.1e-06
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlpsll 46 
                    n+llvGp GsGKt+lak ++ ll
    CCG91612.1 109 TNILLVGPTGSGKTLLAKTFARLL 132
                   69*****************99998 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.32
  Mg_chelatase 101 eislahnGvLfLDElpefkrk 121
                   ++ +a+ G++++DE+ +++rk
    CCG91612.1 168 DVKKAEMGIVYIDEIDKISRK 188
                   6889***********999886 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 7.8
  Mg_chelatase  35 Ktmlakrlpsllpplseeealevakiasvagkkeeekllkrr 76 
                   K m+ k +  ++ +l ++  +e   i+ ++ + +++ +lkrr
    CCG91612.1 365 KNMIEKIMLDIMFELPSRTDIEEVIISRLVAEGKKTPILKRR 406
                   789999999999999998888888888888777777666665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     9e-06    0.0049      12      53 ..      98     136 ..      90     192 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9e-06
                      HHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-E CS
  Sigma54_activat  12 leqikkvaktdlsvlitGesGtGKellaraiheaskrkekpf 53 
                      l+qik v   ++++l++G +G+GK+lla++  +  +    pf
       CCG91612.1  98 LNQIKDVEIEKTNILLVGPTGSGKTLLAKTFARLLD---VPF 136
                      6899999999******************99876543...444 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2     8e-06    0.0044      34      99 ..     109     188 ..      59     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8e-06
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklkitsgPvlekag....dlaalltnl..........eekdvlfideihrlsra 99 
                   +ll+Gp G Gkt lak  a+ l+v + i+ +  l +ag    d+ ++l +l           e  +++idei ++sr+
  CCG91612.1 109 TNILLVGPTGSGKTLLAKTFARLLDVPFCIADATSLTEAGyvgeDVESILLRLlqnanfdvkkAEMGIVYIDEIDKISRK 188
                 579*****************************999999875555778887665222222221123457999999999886 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   2.3e-06    0.0012      54     137 ..     105     189 ..      56     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.3e-06
                 BCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEE.SSSSSSSHSSSEEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHH CS
         MCM  54 lrgdinvllvgdpgtaKsqlLkyveklapravyts.gkgssaagLtaavvrdeetgefvleaGalvladkGvcciDefdkmkeed 137
                  + + n+llvg  g +K+ l k+ ++l++    +  +++ ++ag +   v +   + +      +  a+ G+++iDe+dk++++ 
  CCG91612.1 105 EIEKTNILLVGPTGSGKTLLAKTFARLLDVPFCIAdATSLTEAGYVGEDVESILLRLLQNANFDVKKAEMGIVYIDEIDKISRKS 189
                 36789*********************99988766515566899999998877766666666667889*************99864 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.8e-06    0.0021      12      84 ..      99     188 ..      94     192 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.8e-06
                      HHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H..........HHHHHH.......TTTSEEEEEE-TT--HH CS
  Sigma54_activ_2  12 erLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp..........ldlleq.......akggtLylkdiadlska 84 
                      ++++ ++ +k++++l+G+ Gsgk+l A++++        i++  +l ++           l+ll++       a+ g+ y+ +i+++s++
       CCG91612.1  99 NQIKDVEIEKTNILLVGPTGSGKTLLAKTFARLLDVPFCIADATSLTEAGyvgedvesilLRLLQNanfdvkkAEMGIVYIDEIDKISRK 188
                      6899999*****************999988877665444444444443225555555555666666444444469999999999999876 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.2e-05    0.0063      41      88 ..      99     144 ..      93     203 .. 0.86
   2 ?   -1.1   0.0       1.5   8.2e+02     220     264 ..     326     370 ..     297     376 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  41 elikekklaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsev 88 
                 + ik+ ++    +Ll+Gp+g+Gkt la + ++ l   vpf++  ++ +
  CCG91612.1  99 NQIKDVEIEKTNILLVGPTGSGKTLLAKTFARLLD--VPFCIADATSL 144
                 568999999999********************996..****9988766 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.5
                 XXXXXXXXXXXXXXXXX.XXXXXXX....XXXXXXXXXXXXXXXXX CS
       TIP49 220 vvqevtLhdlDvanarp.qdllslllqllkskkteiteklreeink 264
                 + q + L+ lD +     ++ +  ++q  k kkt  +  l++ i+k
  CCG91612.1 326 IKQYIKLFALDHIKLTFaKEAIRFFAQEAKKKKTGAR-ALKNMIEK 370
                 4467899999998877558999999888888888543.45566655 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   8.8e-06    0.0048     122     152 ..     101     131 ..      42     141 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.8e-06
       T2SSE 122 lrkavrerglilvsGgTgsGKttllyallke 152
                 ++    e+ +il+ G+TgsGKt l+ +    
  CCG91612.1 101 IKDVEIEKTNILLVGPTGSGKTLLAKTFARL 131
                 444446899*************999876555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     1e-05    0.0056      32      86 ..     107     158 ..      99     187 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1e-05
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiieskl 86 
                 +k ++llvGptG+GKt+++k++ + ld   + + +   ++ t+a  + + +es l
  CCG91612.1 107 EKTNILLVGPTGSGKTLLAKTFARLLD---VPFCIADATSLTEAGYVGEDVESIL 158
                 5789*****************999998...4444455555555555555555554 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.2e-05    0.0065       2      79 ..     108     187 ..     107     203 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.2e-05
      AAA_24   2 klkiliyGpsgiGKTtlakel...gpkplfi.....dtekGlksldadkfpdieswedfldevvelaaeladyktlviDtidelee 79 
                 k +il++Gp g+GKT lak++    + p++i      te+G+       ++d+es+   l + + ++ ++a+  ++ iD id++ +
  CCG91612.1 108 KTNILLVGPTGSGKTLLAKTFarlLDVPFCIadatsLTEAGY------VGEDVESILLRLLQNANFDVKKAEMGIVYIDEIDKISR 187
                 689******************775555555554444444444......33334444444444444456666677777777777665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.3e-05     0.012      25      48 ..     109     132 ..      91     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.3e-05
      AAA_16  25 elvllsGesGvGKsslvrellral 48 
                  ++ll+G+ G+GK+ l+++++r l
  CCG91612.1 109 TNILLVGPTGSGKTLLAKTFARLL 132
                 799*****************9754 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.6e-05    0.0084      46      68 ..     107     129 ..      71     132 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-05
   IstB_IS21  46 kkenivllGpsGvGKshlaialg 68 
                 +k ni+l+Gp+G GK+ la +++
  CCG91612.1 107 EKTNILLVGPTGSGKTLLAKTFA 129
                 578****************9987 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     4e-05     0.022      12      36 ..     109     133 ..     102     185 .. 0.90
   2 ?   -1.9   0.0       8.1   4.4e+03      50      67 ..     336     353 ..     267     396 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4e-05
                 SEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  12 ekvaivGenGaGKStLlkllagllk 36 
                 + + +vG++G+GK+ L+k++a+ll+
  CCG91612.1 109 TNILLVGPTGSGKTLLAKTFARLLD 133
                 6788*****************9976 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 8.1
                 GGB-HHHCCHCEEEE-SS CS
                 xxxxxxxxxxxxxxxxxx RF
    ABC_tran  50 keqeleslrkeigvlpqe 67 
                 ++++l+++++ i+++ qe
  CCG91612.1 336 DHIKLTFAKEAIRFFAQE 353
                 224444444444444444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.8e-05     0.031       4      77 ..     110     186 ..     107     213 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.8e-05
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklke.......ekktylflDEiqevp 77 
                  ++++G+  +GKT l+k++++ l      +   +  + +++ +  + ++++++l++l++        ++ ++++DEi +++
  CCG91612.1 110 NILLVGPTGSGKTLLAKTFARLLD---VPFCIADATSLTEAGYVGE-DVESILLRLLQNanfdvkkAEMGIVYIDEIDKIS 186
                 5799************99996655...3344444444444333322.333333333222334455589999******9985 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.8e-05     0.021       3      53 ..     112     163 ..     111     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.8e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarl.drdvegltdelsggggirkipslldlyd 53 
                 +l+Gp gsGK+ L +++  l ++ ++ ++ +  ++ g++g+++ + ll+l +
  CCG91612.1 112 LLVGPTGSGKTLLAKTFARLLDVpFCIADATSLTEAGYVGEDVESILLRLLQ 163
                 79**********************8888888888888888888877777665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0     4e-05     0.022      18      46 ..     105     135 ..      89     147 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4e-05
                 H..TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  18 l..gdvilLeGdLGaGKTtlvrglakalgve 46 
                    ++ ilL G+ G+GKT l++ +a+ l+v 
  CCG91612.1 105 EieKTNILLVGPTGSGKTLLAKTFARLLDVP 135
                 133456********************99875 PP

>> RBD-FIP  FIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.94   5.1e+02      14      22 ..      57      65 ..      46      66 .. 0.85
   2 ?   -0.9   0.0       2.9   1.6e+03       1      16 [.     310     325 ..     310     334 .. 0.78
   3 ?   10.4   0.0   0.00088      0.48       7      36 ..     352     381 ..     351     381 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.94
                HHHHHHHHH CS
     RBD-FIP 14 eenrrLedY 22
                e+ +rLedY
  CCG91612.1 57 EIFARLEDY 65
                78899**** PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.9
                 THHHHHHHHHHHHHHH CS
     RBD-FIP   1 srdeLiqalqkqEeen 16 
                 + deL+ +l + ++ +
  CCG91612.1 310 TEDELVRILTEPKNAI 325
                 6799999999887765 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00088
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC-GG CS
     RBD-FIP   7 qalqkqEeenrrLedYiDnlLlrvmEhnPs 36 
                 q+++k+++ +r L+  i++++l +m + Ps
  CCG91612.1 352 QEAKKKKTGARALKNMIEKIMLDIMFELPS 381
                 899**********************88776 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.7e-05     0.047      23      58 ..      95     131 ..      82     140 .. 0.79
   2 ?   -2.6   0.0       5.7   3.1e+03     116     132 ..     170     186 ..     161     190 .. 0.81
   3 ?   -2.8   0.0       6.5   3.5e+03     147     153 ..     365     371 ..     324     406 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.7e-05
        TniB  23 LeeLleypk.rkrmpnlllvGdsnnGKtmivekFarl 58 
                 L +L +  + + +  n+llvG++  GKt +++ Farl
  CCG91612.1  95 LSSLNQIKDvEIEKTNILLVGPTGSGKTLLAKTFARL 131
                 444544444344568*******************985 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.7
        TniB 116 relkvrvLiiDEihnll 132
                 ++ ++ ++ iDEi+++ 
  CCG91612.1 170 KKAEMGIVYIDEIDKIS 186
                 6678889999**99886 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6.5
        TniB 147 ksLgnel 153
                 k++ +++
  CCG91612.1 365 KNMIEKI 371
                 3332222 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00017     0.091      18      40 ..     107     129 ..      97     131 .. 0.90
   2 ?   -0.2   0.0      0.96   5.2e+02     100     142 ..     154     197 ..     135     210 .. 0.67
   3 ?   -3.1   0.1       7.3     4e+03      97     115 ..     354     372 ..     317     385 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00017
      ATPase  18 egrvvlitGepGtGKtifalqFl 40 
                 e++ +l++G +G+GKt++a++F+
  CCG91612.1 107 EKTNILLVGPTGSGKTLLAKTFA 129
                 67889*****************7 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.96
      ATPase 100 dkedleelieelaeaikeikakrvviDsitgl.ayeekeavaRe 142
                  ++ l  l+++ +  +k+ +   v iD i+ +  ++++++ +R+
  CCG91612.1 154 VESILLRLLQNANFDVKKAEMGIVYIDEIDKIsRKSDSPSITRD 197
                 34444445555555677888889999***999666666666665 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 7.3
      ATPase  97 eekdkedleelieelaeai 115
                 ++k+k+ +++l++ +++++
  CCG91612.1 354 AKKKKTGARALKNMIEKIM 372
                 2244444455555555444 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0     0.001      0.56      13      31 ..     107     125 ..      95     132 .. 0.82
   2 ?    1.6   0.0      0.37     2e+02     109     144 ..     159     196 ..     152     205 .. 0.74
   3 ?   -2.2   0.0       5.7   3.1e+03      35      67 ..     302     333 ..     299     385 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
                 TTCEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTlaf 31 
                 ++ ++l+ ++TGsGKTl +
  CCG91612.1 107 EKTNILLVGPTGSGKTLLA 125
                 6789************975 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.37
                 HHHHHCTSSHCTTEEE..EEEETHHHHHHTTTHHHHHH CS
                 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
        DEAD 109 ddllstgklnlsqvrf..lVlDEadrlldqgfsdfinr 144
                 ++ll++ ++++++ ++  + +DE+d+++ ++ s+ i r
  CCG91612.1 159 LRLLQNANFDVKKAEMgiVYIDEIDKISRKSDSPSITR 196
                 556666666666664432779*******9999888876 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 5.7
                 HHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  35 vlqivyetkgktgpkalivePtreLaeqtlnnl 67 
                 v+++++e  ++++   ++ eP  ++++q ++ +
  CCG91612.1 302 VIATLSE-LTEDELVRILTEPKNAIIKQYIKLF 333
                 5555544.4445555566666666666655544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00017     0.092       3      27 ..     111     135 ..     109     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00017
                 EEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaeg 27 
                 ++l G+ GsGKT L++ +a+++  +
  CCG91612.1 111 ILLVGPTGSGKTLLAKTFARLLDVP 135
                 789****************998765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00011     0.061      13      38 ..      99     124 ..      91     133 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      AAA_29  13 dg.htieidlkgatlltGpsGsGKSTl 38 
                 ++ +++ei+   ++ll+Gp+GsGK+ l
  CCG91612.1  99 NQiKDVEIEKT-NILLVGPTGSGKTLL 124
                 66678889855.6***********755 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00029      0.16      22      47 ..     106     131 ..      73     144 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00029
                 .TTSEEEEEESTTSTHHHHHHHHHHH CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklier 47 
                  +++++l++ +TG+GKTl+a  +++ 
  CCG91612.1 106 IEKTNILLVGPTGSGKTLLAKTFARL 131
                 4677999***********98766654 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00028      0.15       2      26 ..     111     137 ..     111     176 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00028
      AAA_33   2 vllvGlpGsGKstlaerllkklg..av 26 
                 +llvG+ GsGK+ la+  ++ l+  ++
  CCG91612.1 111 ILLVGPTGSGKTLLAKTFARLLDvpFC 137
                 689*************99988776433 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.045        25       5      25 ..     109     129 ..     105     147 .. 0.87
   2 ?    6.1   0.1     0.011         6     140     183 ..     295     338 ..     280     360 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.045
                 EEEEEEEBTTSSCCCCCCTTS CS
      Septin   5 ftlmvvGesglGkttlintlf 25 
                  ++++vG  g Gkt l +t+ 
  CCG91612.1 109 TNILLVGPTGSGKTLLAKTFA 129
                 589*************99986 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.011
                 TTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------S CS
      Septin 140 ekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpde 183
                 e v   Pvia    lt++El ++ ++ ++ + ++ ik++ l ++
  CCG91612.1 295 EFVGRFPVIATLSELTEDELVRILTEPKNAIIKQYIKLFALDHI 338
                 666778*********************************95544 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00063      0.34       1      25 [.     111     148 ..     111     203 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00063
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.............g 25 
                 Ill G+ G+GKt lak  +++l +             g
  CCG91612.1 111 ILLVGPTGSGKTLLAKTFARLLDVpfciadatslteaG 148
                 99***************999986666555555555541 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0048       2.6      19      52 ..      83     116 ..      80     119 .. 0.95
   2 ?    0.2   0.0         2   1.1e+03      33      45 ..     305     317 ..     302     319 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0048
                 GGHHHHHTTTSSHHHHTTSCHHHHHHCTTTSHHH CS
       SAM_1  19 qYadlFrageidgdaLlllteddLeklgvtllGH 52 
                 +Y+  F+ + +d+  L ++++ ++ek ++ l+G+
  CCG91612.1  83 HYKRIFSGELTDLSSLNQIKDVEIEKTNILLVGP 116
                 79******************************98 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 2
                 HHTTSCHHHHHHC CS
       SAM_1  33 aLlllteddLekl 45 
                 +L +lted+L ++
  CCG91612.1 305 TLSELTEDELVRI 317
                 799*******984 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00098      0.53       1      22 [.     111     132 ..     111     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00098
  RNA_helicase   1 iwlyGpsgeGKStlakeLakal 22 
                   i+l+Gp+g GK++lak++a+ l
    CCG91612.1 111 ILLVGPTGSGKTLLAKTFARLL 132
                   689**************98866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      756  (0.0421663); expected 358.6 (0.02)
Passed Vit filter:                       133  (0.00741815); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 2811.98
//
Query:       CCG91613.1  [L=368]
Description: tRNA-specific 2-thiouridylase mnmA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.9e-112  374.0   0.0   6.8e-112  373.8   0.0    1.0  1  tRNA_Me_trans  tRNA methyl transferase
    5.1e-05   22.5   0.1    0.00068   18.8   0.1    2.2  2  NAD_synthase   NAD synthase
      7e-05   22.4   0.0     0.0086   15.6   0.0    2.4  2  QueC           Queuosine biosynthesis protein QueC
    0.00061   19.4   0.1       0.05   13.2   0.1    2.2  2  ThiI           Thiamine biosynthesis protein (ThiI)
     0.0053   16.5   0.0       0.61    9.8   0.0    2.3  2  ATP_bind_3     PP-loop family
  ------ inclusion threshold ------
       0.11   12.1   0.0       0.18   11.4   0.0    1.3  1  Asn_synthase   Asparagine synthase


Domain annotation for each model (and alignments):
>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  373.8   0.0  2.3e-115  6.8e-112       2     356 .]      11     361 ..      10     361 .. 0.96

  Alignments for each domain:
  == domain 1  score: 373.8 bits;  conditional E-value: 2.3e-115
  tRNA_Me_trans   2 kvvvalSgGVDSsvaaallkeqgyevigvflklweeedeeg..keccaeedlkdaervaeklgiplevvdfekeykekvfeefleeyeeGrTPnPd 95 
                    ++vv++SgGVDS+vaa+llk++g++vig++lk+w+++   +  ++cc  e ++da++ a ++gip++++d ++ + ++v+++fl+ey++GrTPnP+
     CCG91613.1  11 RIVVGMSGGVDSTVAALLLKKEGFDVIGITLKVWTDSCMSRslEKCCGPEAINDARNLAAQIGIPHYTIDEADFFEKEVIHYFLDEYRQGRTPNPC 106
                    79**********************************44444457**************************************************** PP

  tRNA_Me_trans  96 vlCNkeiKfgallekakeelgadalatGHYarvsleeeknevellrakdkkkDQsyfLsqlskealekllfPlgeltKeevrkiAkeaglavaekk 191
                    v+CN++iKfg l +k+ +  ga+++atGHYa v+++ ++ + +l++akdk++DQsyfL++ls  +l+++l Plg+l+K+evr+iAkeagl+v +k+
     CCG91613.1 107 VKCNEKIKFGRLWSKVRS-WGAEYIATGHYAIVEHQ-DTTSPSLKKAKDKTRDQSYFLFSLSPFQLSRILTPLGRLEKKEVRAIAKEAGLSVWNKE 200
                    *****************9.***************99.689******************************************************** PP

  tRNA_Me_trans 192 dSqgiCfigkrkfkdflkkyleek...eGkiieietgevlGeheGllsyTiGqrkGlkiagaeeplyVvekdakkntvlvgkgedeealaskklrv 284
                    +S++iCf++ +++kdf+++++ +k    G i++   g+v+G+h+G+  yT+GqrkGl  + +++plyVv++d+   +v vg     e+l ++++ v
     CCG91613.1 201 ESRDICFVAGKNYKDFIEEKIDSKesnAGPILDET-GRVIGSHQGIERYTVGQRKGLPGG-QGRPLYVVDIDPLAKAVKVGG---WESLLKTHCFV 291
                    ********************988755579999988.********************9866.9********************...9999999**** PP

  tRNA_Me_trans 285 kelnwlaeelkekealelevkvrhkqelvkakvelkedetvevkldekvravtpGQaavlYkgdevLGggii 356
                      ++w+++e++++   +++vk+r++ ++v+a ++  e+++++v +++++++++pGQaav Y+gd+vLGgg+i
     CCG91613.1 292 AGAHWIEKEIQTT--RKVTVKLRYNYPEVPAFITPLENGRFRVDFESPQFGISPGQAAVCYEGDTVLGGGWI 361
                    *******877775..89*****************************************************98 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   2.3e-07   0.00068      20      81 ..      11      81 ..       6     115 .. 0.69
   2 ?    0.9   0.0     0.067     2e+02     148     167 ..     174     193 ..     170     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.3e-07
                  EEEEEE-SSHHHHHHHHHHHHHH..........TCGEEEEEE--SSSTTHHHHHHHHHHHHHHTSEEEE--- CS
  NAD_synthase 20 gvvlGlSGGvDSslvaalavkal..........gkenvlalllPssvsseedvedalalaenlgievktidi 81
                   +v+G+SGGvDS+++a l +k              +  ++  l ++   +e ++da++la ++gi   tid 
    CCG91613.1 11 RIVVGMSGGVDSTVAALLLKKEGfdvigitlkvWTDSCMSRSL-EKCCGPEAINDARNLAAQIGIPHYTIDE 81
                  58**************998874324444433333333333333.4555677788888888888888777765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.067
                   BETTTTS-HHHHHHHHHHTT CS
  NAD_synthase 148 lapiaellKtevkeLakeln 167
                   l p+++l K+ev+++ake +
    CCG91613.1 174 LTPLGRLEKKEVRAIAKEAG 193
                   68**************9877 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.9e-06    0.0086       2      32 ..      12      42 ..      11      85 .. 0.93
   2 !    4.6   0.0    0.0066        20     153     176 ..     172     195 ..     134     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.9e-06
                EEEE--SSHHHHHHHHHHHHH-SEEEEEEEE CS
        QueC  2 avvllSGGlDSttvlalakkegkevealtfd 32
                +vv +SGG+DSt++++l kkeg  v+ +t++
  CCG91613.1 12 IVVGMSGGVDSTVAALLLKKEGFDVIGITLK 42
                7999*********************999875 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0066
                 EEE-TTTT--HHHHHHHHHHTTHH CS
        QueC 153 eieaPlidlsKaeivklgkelgvp 176
                 +i +Pl +l+K+e+ +++ke g+ 
  CCG91613.1 172 RILTPLGRLEKKEVRAIAKEAGLS 195
                 799*****************9954 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   1.7e-05      0.05       7      36 ..      13      42 ..       9      59 .. 0.86
   2 ?    3.9   0.0     0.011        34     139     174 ..     172     208 ..     167     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
        ThiI  7 laLlSgGiDSpVaaylllkRGcrvvlvhlk 36
                ++ +SgG+DS Vaa ll k G+ v  ++lk
  CCG91613.1 13 VVGMSGGVDSTVAALLLKKEGFDVIGITLK 42
                6669********************999986 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.011
        ThiI 139 lilrPLigldKeeiiklAkeigtyeisieke.dkCsv 174
                  il PL  l+K+e+ ++Ake g      e++ d C v
  CCG91613.1 172 RILTPLGRLEKKEVRAIAKEAGLSVWNKEESrDICFV 208
                 59******************99887777777677765 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0002      0.61       2      22 ..      12      32 ..      11      78 .. 0.89
   2 !    4.5   0.0    0.0088        26      95     162 ..     125     195 ..     110     207 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0002
                EEEE--SCHHHHHHHHHHHHH CS
  ATP_bind_3  2 vlvAvSgGlDSmaLllllakl 22
                ++v++SgG+DS++  lll+k+
  CCG91613.1 12 IVVGMSGGVDSTVAALLLKKE 32
                89***********99999886 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0088
                 CT.CEEE---BH....HHHHHHHHHHHCCT--CCHHH-S-SEEEETTCCEE-CCCT--HHHHHHHHHHTT-- CS
  ATP_bind_3  95 egievlllAhha....dDqaEtfllrlargsglaglagikeaseiasirlvRPlLkvskeeleeylkekkik 162
                  g+e+++++h a    +D +    l+ a+++  ++ + + + s+++  r++ Pl  ++k+e+++++ke +++
  CCG91613.1 125 WGAEYIATGHYAivehQDTTSP-SLKKAKDKTRDQSYFLFSLSPFQLSRILTPLGRLEKKEVRAIAKEAGLS 195
                 5667777777432211333333.344555566666666777899999*********************9986 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.1e-05      0.18      24      97 ..      16      96 ..       8     115 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.1e-05
  Asn_synthase 24 LSGGlDSSliaalaarqsksplktFsigf..........ee.kgsdeakyakevaehlgtehtelvlteeelldalpdviy.hlee 97
                  +SGG+DS++ a l++++   ++   +++           e+  g + +  a+ +a+++g++h  + ++e+++++  ++vi+ +l+e
    CCG91613.1 16 MSGGVDSTVAALLLKKEGF-DVIGITLKVwtdscmsrslEKcCGPEAINDARNLAAQIGIPH--YTIDEADFFE--KEVIHyFLDE 96
                  7******999999999876.666666666666666676644577777889***********9..8889999988..4444325555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2571.67
//
Query:       CCG91614.1  [L=149]
Description: hypothetical protein MFUM_170027 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1182.60
//
Query:       CCG91615.1  [L=104]
Description: Periplasmic divalent cation tolerance protein cutA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-30  103.2   1.8    5.9e-30  103.1   1.8    1.0  1  CutA1     CutA1 divalent ion tolerance protein


Domain annotation for each model (and alignments):
>> CutA1  CutA1 divalent ion tolerance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   1.8   3.3e-34   5.9e-30       2      98 ..       5     101 ..       4     102 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 3.3e-34
                 EEEEEESSHHHHHHHHHHHHHTTS-SEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHSSSSS-EEEEEEESEEEHHHHHHHHH CS
       CutA1   2 lvlvtapseeeakklaralveeklaACvnilpkieSvYrWkgkieedkEvllliktreekveelekrvkelhpyevpeiialpieagseaYlkWiee 98 
                 +vl++++++ee ++la+ +v+++la Cvni+p + S+Y+W++k ee++E++l++k++eek+eel +++ke+h+ye+peii+++ +++  +Y +W e+
  CCG91615.1   5 VVLMSCSDKEEGERLAKLIVTKRLASCVNIIPLVYSFYWWENKQEETQEAMLIAKSSEEKWEELIQFIKENHSYECPEIISFEPSQVFLPYFRWWEK 101
                 799*******************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1268  (0.0707234); expected 358.6 (0.02)
Passed bias filter:                      793  (0.04423); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 801.00
//
Query:       CCG91616.1  [L=224]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1747.93
//
Query:       CCG91617.1  [L=358]
Description: Methionine sulfoxide reductase with associated domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-60  204.3   0.6    1.4e-60  203.9   0.6    1.2  1  PMSR           Peptide methionine sulfoxide reductase
    6.2e-48  161.9   0.0    1.1e-47  161.1   0.0    1.4  1  SelR           SelR domain
  ------ inclusion threshold ------
       0.06   13.6   0.0       0.11   12.8   0.0    1.4  1  Yippee-Mis18   Yippee zinc-binding/DNA-binding /Mis18, centro
       0.09   12.6   0.0       0.19   11.6   0.0    1.5  1  DUF2374        Protein  of unknown function (Duf2374)
       0.24   11.4   1.3        0.5   10.4   0.1    2.0  2  zf-C2HC5       Putative zinc finger motif, C2HC5-type
        0.3   10.6   0.8         29    4.3   0.1    2.6  2  TF_Zn_Ribbon   TFIIB zinc-binding
        1.7    8.4   3.7         31    4.5   0.1    2.9  3  zinc_ribbon_2  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PMSR  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.9   0.6   5.4e-64   1.4e-60       2     149 ..     204     351 ..     203     356 .. 0.97

  Alignments for each domain:
  == domain 1  score: 203.9 bits;  conditional E-value: 5.4e-64
                 EEEE-S-HHHHHHHHCTSTTEEEEEEEEESSS-SS--HHHHHTTTT--EEEEEEEEETTTS-HHHHHHHHHHTS-TT-SSEETTEESGGG--EEEESSC CS
        PMSR   2 avlagGCFWgveklfeklkGvlstevGYagGktenptYeevcsgktghaEavevvydpekvsleellelffeihDptqlnrqgnDvGtqYrsaiyytne 100
                 a +agGCFWg++++f+k++Gv+ t +GYagG+++ ptYe+vc+g+tghaE+v + +dp+ vs+++llelf++ihDpt+++rqg DvG qYr +i+y ne
  CCG91617.1 204 AAFAGGCFWGIQDYFKKVEGVIWTVAGYAGGTVPFPTYEQVCTGTTGHAETVYLLFDPTIVSYKKLLELFWQIHDPTTAERQGPDVGPQYRPIIFYYNE 302
                 79************************************************************************************************* PP

                 CHHHHHHHHHHHHHTTHTTSSS---EEEEG-SEEE--CCCTTHHHH-TT CS
        PMSR 101 eqkevaeevleelqkkkalkkkivteieplkefykaeeyHqqYleknpe 149
                  q+++a +++e+l+k+k ++kki+t i p++ fy+aeeyHq+Ylek++ 
  CCG91617.1 303 GQRQEAFQSKENLEKSKYFGKKIATAILPATPFYPAEEYHQNYLEKHHL 351
                 **********************************************975 PP

>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.1   0.0   4.1e-51   1.1e-47       2     121 .]      69     187 ..      68     187 .. 0.98

  Alignments for each domain:
  == domain 1  score: 161.1 bits;  conditional E-value: 4.1e-51
                 HHCTSHCCHHHHHHHTT-SSTTSSSTSS--SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECTTSEEEEEEETTCECEEEEEECT CS
        SelR   2 lkkkLtpeqyevlrekgterpftgeyekekekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtslgmertevvcakcdahlGhvFed 100
                 ++  L +e ++++r++gte+pf+g++ + ++kG+y+c  cg pLfss++kf+sg+GwpsF+++i++e++ e+ d slgm rte+ ca+c+ahlGhvFed
  CCG91617.1  69 WRYLLGAEVFRITRRAGTEAPFCGDLLDIHQKGIYKCSSCGLPLFSSDSKFHSGTGWPSFFSPIAKENIIERVDLSLGMIRTEILCARCGAHLGHVFED 167
                 899999********************************************************************************************* PP

                 SSSSS.SEEEEE-CCCEEEEE CS
        SelR 101 gpkpttgkrycinsvslkfkp 121
                 gpkpt g+ryc+ns+sl f+p
  CCG91617.1 168 GPKPT-GLRYCVNSASLVFTP 187
                 ***95.************986 PP

>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.1e-05      0.11       3      80 ..     103     178 ..     101     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-05
                   EEETTTS-EEEECCCEEEEECCCEEEES---CCCEEEECEEEETTSTTEEEEEEEETTT--EEEEEEEECSCC..CCCCC CS
  Yippee-Mis18   3 fqCkkCktilgdslqlvsegralnivvlkkvtrnvvvgkelvtdeegkctystlsCkgCnsvlGwkYksteee..lkykr 80 
                   ++C++C  +l  s + + +g+ +  ++    ++n++ +  l+       + +++ C+ C+++lG ++++ ++   l+y++
    CCG91617.1 103 YKCSSCGLPLFSSDSKFHSGTGWPSFFSPIAKENIIERVDLSLG----MIRTEILCARCGAHLGHVFEDGPKPtgLRYCV 178
                   67888888888888888888887777777777777766666666....88899**************9988764555555 PP

>> DUF2374  Protein  of unknown function (Duf2374)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.3e-05      0.19       4      15 ..     221     232 ..     219     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.3e-05
     DUF2374   4 LEsviWhvlGYa 15 
                  E viW+v+GYa
  CCG91617.1 221 VEGVIWTVAGYA 232
                 699********8 PP

>> zf-C2HC5  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00019       0.5      23      50 ..      91     118 ..      87     120 .. 0.85
   2 ?   -1.5   0.1         1   2.6e+03      19      24 ..     153     158 ..     147     162 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00019
    zf-C2HC5  23 CGkiiCakeglskpCsfCgspllsseer 50 
                 CG  + + ++   +Cs+Cg pl+ss+ +
  CCG91617.1  91 CGDLLDIHQKGIYKCSSCGLPLFSSDSK 118
                 888888877777***********99865 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1
    zf-C2HC5  19 nClnCG 24 
                 +C  CG
  CCG91617.1 153 LCARCG 158
                 677777 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.013        34       4      27 ..      89     110 ..      89     112 .. 0.83
   2 ?    4.3   0.1     0.011        29      17      27 ..     149     159 ..     149     167 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.013
                   TTTTCEECHEE.TSTTCEEESSSSB CS
  TF_Zn_Ribbon   4 PnCgstnlveD.pergelvCtdCGl 27 
                   P Cg    ++D +  g + C++CGl
    CCG91617.1  89 PFCGD---LLDiHQKGIYKCSSCGL 110
                   77885...78878999999*****7 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.011
                   TTCEEESSSSB CS
  TF_Zn_Ribbon  17 rgelvCtdCGl 27 
                   r+e++C +CG+
    CCG91617.1 149 RTEILCARCGA 159
                   789*******7 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.8   4.5e+03      13      16 ..      88      91 ..      86      92 .. 0.69
   2 ?    4.5   0.1     0.012        31       1      15 [.     104     119 ..     104     119 .. 0.77
   3 ?    4.3   0.1     0.014        35      15      23 .]     153     161 ..     150     161 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.8
  zinc_ribbon_2 13 akFC 16
                   a+FC
     CCG91617.1 88 APFC 91
                   7788 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.012
  zinc_ribbon_2   1 fCpnCGael.qdnakF 15 
                    +C++CG +l + ++kF
     CCG91617.1 104 KCSSCGLPLfSSDSKF 119
                    799**98887777666 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.014
  zinc_ribbon_2  15 FCpyCGtpl 23 
                     C +CG++l
     CCG91617.1 153 LCARCGAHL 161
                    699999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2473.93
//
Query:       CCG91618.1  [L=347]
Description: Glyceraldehyde-3-phosphate dehydrogenase 1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-65  219.5   0.0    2.6e-65  218.8   0.0    1.4  1  Gp_dh_C        Glyceraldehyde 3-phosphate dehydrogenase, C-te
      1e-29  102.8   0.0    2.1e-29  101.8   0.0    1.5  1  Gp_dh_N        Glyceraldehyde 3-phosphate dehydrogenase, NAD 
  ------ inclusion threshold ------
      0.021   15.0   0.8      0.096   12.8   0.0    2.5  5  DapB_N         Dihydrodipicolinate reductase, N-terminus
       0.04   13.9   0.1      0.086   12.8   0.1    1.5  1  UBZ_FAAP20     Ubiquitin-binding zinc-finger
      0.095   12.7   0.0       0.18   11.8   0.0    1.4  1  ADH_zinc_N     Zinc-binding dehydrogenase
       0.14   12.8   0.1       0.64   10.7   0.1    2.1  1  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.8   0.0   8.8e-69   2.6e-65       1     158 []     168     326 ..     168     326 .. 0.98

  Alignments for each domain:
  == domain 1  score: 218.8 bits;  conditional E-value: 8.8e-69
                 HHHHHHHH.HHHHEEEEEEEEEEEECTTTSBSSSS--.SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS- CS
     Gp_dh_C   1 Laplakvl.ndkfgikkglmttvhaytndQkllDgpskkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekevt 98 
                 L+pl++vl ++ fgi++glmttvh+yt+ Q+l+Dgpskkd++ +raa  niip++tgaaka +lV+pelkgkl+g+A+rVPtp+vsvvdl+v+++ke++
  CCG91618.1 168 LTPLVHVLlKEGFGIEEGLMTTVHSYTASQRLQDGPSKKDWKGGRAAEGNIIPATTGAAKATTLVIPELKGKLTGMAFRVPTPTVSVVDLTVRTTKETS 266
                 789999962699*************************************************************************************** PP

                 HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGCEEETTTEEEEEEEE CS
     Gp_dh_C  99 veevnaalkeaaegalkgilsyteeelvssDlvgdphssifdaketivveenlvkvvawy 158
                 ++e++ a+k+a+e++l+gil+ytee++vs+D+ +d+hssifda ++i++++++ k++awy
  CCG91618.1 267 YAEICGAMKKASESYLEGILGYTEEQVVSRDYLKDSHSSIFDAGSGIALNSRFYKLIAWY 326
                 ***********************************************************9 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.0     7e-33   2.1e-29       2     100 ..       3     113 ..       2     114 .. 0.89

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 7e-33
                 EEEEESTSHHHHHHHHHHHHHT...TCEEEEEE-TS-HHHHHHHHHEETTTEC-SS-EEEE........TTE.EEETTEEEEEE--SS.GGGS-CHHHT CS
     Gp_dh_N   2 kvainGfGRIGrlvlralleek...elevvaindltdletlayllkyDsvhgrfkgeveae........eea.lvvngkkikvlaekd.peelpwkelg 87 
                 kvainGfGRIGrl+lra++e+k   elevva+nd++++++layllkyD+ +gr + +v+ +        + + l+v+g+ i++l+ k+ p+++pwkelg
  CCG91618.1   3 KVAINGFGRIGRLILRAIAEQKllnELEVVAVNDIVSADNLAYLLKYDTNYGRSPFSVKSSkskdnleeD-DlLEVDGHIIQCLSIKEgPAAMPWKELG 100
                 8******************6654559***************************99999887555455433.269***********9999********** PP

                 SSEEEE-SSS--S CS
     Gp_dh_N  88 vdlVvestGvftd 100
                 vd+V+estG+ft 
  CCG91618.1 101 VDIVFESTGLFTA 113
                 ***********85 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.2e-05     0.096       2      33 ..       3      36 ..       2      77 .. 0.78
   2 ?   -1.9   0.0       1.2   3.5e+03      90     113 ..      99     122 ..      93     133 .. 0.65
   3 ?   -3.0   0.0       2.6   7.7e+03      16      43 ..     129     151 ..     126     165 .. 0.61
   4 ?   -3.5   0.1       3.6   1.1e+04      94     113 ..     218     237 ..     214     244 .. 0.69
   5 ?   -3.3   0.0       3.1   9.2e+03      21      39 ..     263     281 ..     255     299 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.2e-05
                EEEEETTTSHHHHHHHHHHHHS...TTEEEEEEEE CS
      DapB_N  2 kvavvGasGrmGkevvkaveea...edlelvaavd 33
                kva++G+ Gr+G+ +++a+ e+   ++le+va+ d
  CCG91618.1  3 KVAINGF-GRIGRLILRAIAEQkllNELEVVAVND 36
                8******.*************94445566666544 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
                 TT-EEEE--SS--HHHHHHHHHHT CS
      DapB_N  90 kgvklViGTTGlseeelaeleela 113
                  gv++V+ +TGl ++  + + ++ 
  CCG91618.1  99 LGVDIVFESTGLFTAASKAIGHIK 122
                 588999999999666666655544 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.6
                 HHHHHHHSTTEEEEEEEETTCSTTTTTB CS
      DapB_N  16 vvkaveeaedlelvaavdrkeselegkd 43 
                 ++ a  +++d+++v +v++++      d
  CCG91618.1 129 IITAPGKEADITVVMGVNHEQ-----LD 151
                 555666667777777777765.....33 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 3.6
                 EEE--SS--HHHHHHHHHHT CS
      DapB_N  94 lViGTTGlseeelaeleela 113
                 ++ +TTG  ++    + el 
  CCG91618.1 218 IIPATTGAAKATTLVIPELK 237
                 67789998887766666655 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 3.1
                 HHSTTEEEEEEEETTCSTT CS
      DapB_N  21 eeaedlelvaavdrkesel 39 
                 +e++ +e+ +a+++ ++++
  CCG91618.1 263 KETSYAEICGAMKKASESY 281
                 4555555555555555443 PP

>> UBZ_FAAP20  Ubiquitin-binding zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.9e-05     0.086      18      29 ..      75      86 ..      63      88 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.9e-05
  UBZ_FAAP20 18 LDiDsHLAqCLa 29
                L++D+H+ qCL+
  CCG91618.1 75 LEVDGHIIQCLS 86
                9**********8 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.9e-05      0.18      55      97 ..      97     145 ..      60     176 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.9e-05
                 TTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE......E CS
  ADH_zinc_N  55 ggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee......f 97 
                 ++ gvd+vfe +G  ++ + a+  +k g + v++ ++++e +      +
  CCG91618.1  97 KELGVDIVFESTGLFTAASKAIGHIKSGAKKVIITAPGKEADitvvmgV 145
                 3559******************************997777764444333 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00021      0.64       1      30 [.       8      37 ..       8     138 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
                   --SHHHHHHHHHHHH---SSEEEEEEEEES CS
  NAD_binding_3  1 GlGaiGsavleqlkrqqseielelvavadr 30
                   G+G iG+ +l+++++q+   ele+vav d 
     CCG91618.1  8 GFGRIGRLILRAIAEQKLLNELEVVAVNDI 37
                   99****************999999988664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2383.73
//
Query:       CCG91619.1  [L=404]
Description: Phosphoglycerate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.7e-148  492.9   0.0   6.4e-148  492.7   0.0    1.0  1  PGK       Phosphoglycerate kinase


Domain annotation for each model (and alignments):
>> PGK  Phosphoglycerate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  492.7   0.0  3.6e-152  6.4e-148       1     378 []       5     393 ..       5     393 .. 0.95

  Alignments for each domain:
  == domain 1  score: 492.7 bits;  conditional E-value: 3.6e-152
                 GGGS--TT-EEEEEE-----EECT.....TEES--HHHHHHHHHHHHHHHTT-EEEEEE--S--TT.S-GGG-SHHHHHHHHHHHTT-EEEESSTTSHH CS
         PGK   1 vkdldlkgkrvlvRvDfNvplkke.....gkitddtriraalpTikyllekgakvvllsHlgrpkg.ekeklslkpvaerLsellgkeVkfvedvvgee 93 
                 ++dl+lkgkrvlvRvD+Nvpl+ +      +itd+tri ++l+T+kyl++++ak+vl+sHlgrpkg +++k sl+p+a  L++llg +Vkfv d++g+e
  CCG91619.1   5 IRDLSLKGKRVLVRVDYNVPLELDktinsYVITDQTRILETLETLKYLIDQKAKIVLISHLGRPKGkKNPKESLAPIAPLLNRLLGVPVKFVGDCIGPE 103
                 689******************9777888899***********************************5559***************************** PP

                 HHHHHHT-TTT-EEEES-GGGSTTTTTT-HHHHHHHHHT-SEEEE--GGGTTS--TTTTHHHHCS.EEEE-HHHHHHHHHHHHHHHS--SSEEEEEEES CS
         PGK  94 veeaiaelkegevllLeNvrfykeEekndeelakklasladvyVnDAFgtahrahaStvgiakvl.saaaGllmekElealskvlenperplvailGGa 191
                 v++a ++l+ege+llLeN+rf++eEeknd+e++k lasl+dvyVnDAFg+ahrah+St+g+++++ ++a+G+lmekEl++l + le p+rp+v++lGGa
  CCG91619.1 104 VDKAKEQLAEGEILLLENTRFHPEEEKNDPEFSKALASLIDVYVNDAFGSAHRAHSSTEGVSHFVrEKAIGFLMEKELKYLGQELEAPRRPFVVVLGGA 202
                 *****************************************************************766******************************* PP

                 -HHHCHHHHHHHTTT-SEEEEETCHHHHHHHHTT-B-TTSS--GGGHHHHHHHHHHHHHHT-EEE--SEEEEESS...S..STTS.EEEECCG--TT-E CS
         PGK 192 kvsdkikvienLlekvdkliigGgmantFlkaqgleigkslveedklelakellekakkkgvkillpvDvvvake...e..aekeakvveveaipedem 285
                 kvsdki+vi++Llek+d+l+igG+ma+tFl a g+++g+slve+dk+++a+e l+ka++++ k+llp+D++va++   e   +k+ + ++  +i e+  
  CCG91619.1 203 KVSDKIEVINRLLEKADSLLIGGAMAYTFLLALGHKVGNSLVEPDKISVATEALAKANERNIKFLLPIDHLVATSidfEqkIAKSLEWTTGIDIAEGRL 301
                 *************************************************************************997531222222445577789***** PP

                 EEEE-HHHHHHHHHHHCC-SEEEEES-SS-TTSGCCCHHHHHHHHHHHHHCHTSEEEEESHHHHHHHHHTT-GGGSSEEESSSHHHHHHHCTS CS
         PGK 286 alDigpktielfaeaikeaktvvwnGpmGvfeiekfakGTkaiakalaeatkgalsivGGgdsaaaveklgladkvshvStGGgAsLelLegk 378
                 ++Dig +t++ + ++ik akt++wnGpmGvfei+  +kGT++iak ++e+ + a+siv Ggds++a+++ gl++kvs++StGGgA+L++L+gk
  CCG91619.1 302 GVDIGLQTMQSYGQEIKGAKTILWNGPMGVFEIPGCEKGTFSIAKSISENPS-AISIVAGGDSIKALHQSGLSNKVSFISTGGGATLDFLKGK 393
                 *************************************************875.**************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2656.71
//
Query:       CCG91620.1  [L=255]
Description: triosephosphate isomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-92  307.0   0.0      9e-92  306.8   0.0    1.0  1  TIM       Triosephosphate isomerase


Domain annotation for each model (and alignments):
>> TIM  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.8   0.0     5e-96     9e-92       1     243 []       6     250 ..       6     250 .. 0.97

  Alignments for each domain:
  == domain 1  score: 306.8 bits;  conditional E-value: 5e-96
                 -EEEEE-TBTS-HHHHHHHHHHHHHHCHG.CTSEEEEE--GGGHHHHHHHHT.TSSECEEES--BSSSSBS-TT--BHHHHHHTT-SEEEES-HHHHHH CS
         TIM   1 kliagNwKmnktleeakellkklkaklke.ekvevviappflylekvkklle.esklklgaqnvsaeksGafTGevsaemlkdlgvkyviiGHsErrql 97 
                 k+iagNwKmnkt +eak+++++l ++l + ++++vvi+ppf++l++v++ll+ +s+++lgaqn++ +++G++TGe+s  ml+++ ++yvi+GHsErr  
  CCG91620.1   6 KIIAGNWKMNKTVSEAKAFVHALLKELGDySAADVVICPPFTALQAVSELLNhSSQVRLGAQNLYPASHGPYTGEISPWMLREFYCHYVIVGHSERRIH 104
                 69********************666666669*******************98457899***************************************** PP

                 ST--HHHHHHHHHHHHHTT-EEEEEE---HHHHHTT.HHHHHHHHHHHHTTTS-CCCGGCEEEEE--GGGSSSS----HHHHHHHHHHHHHHHHHHSTH CS
         TIM  98 fkEtdelvakKvkaalksglkpilCvGEtleereagkteevvkeqlkeilkkldeealknvviAYePvWAiGtgktatpeqaqevhaairkelaekvsk 196
                 ++E+de+++kKvkaal++ l+pilC+GE leer+ g  +e +++ql+  l  ++e+++ +++iAYeP+WAiGtgk+at eqaqevh +ir++l++++s 
  CCG91620.1 105 LGESDEFINKKVKAALSASLHPILCIGEALEERQRGIWKEKIRSQLELGLMAIEEKQVVDCIIAYEPIWAIGTGKNATSEQAQEVHFFIREQLTKLFSD 203
                 *************************************************************************************************** PP

                 HHHTTSEEEEESS--TTTHHHHHTSTT--EEEESGGGCSHHHHHHHH CS
         TIM 197 evaekirilYGGsvnkenakellkqkdidGlLvGgaslkaesFlkii 243
                 ++a+kiri+YGGsv+++na+ell+++didGlL+Ggasl++ sF +ii
  CCG91620.1 204 QIAQKIRIQYGGSVTPHNAQELLACSDIDGLLIGGASLDVLSFSSII 250
                 ********************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1589.54
//
Query:       CCG91621.1  [L=106]
Description: Preprotein translocase subunit SecG [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-18   65.0  11.7    6.1e-18   64.7  11.7    1.1  1  SecG          Preprotein translocase SecG subunit
  ------ inclusion threshold ------
       0.03   14.6   1.2      0.042   14.1   1.2    1.2  1  2TM           2TM domain
       0.03   13.7   1.0      0.034   13.5   1.0    1.0  1  DUF3810       Protein of unknown function (DUF3810)
      0.032   15.1   0.5        9.3    7.2   0.0    2.1  2  EphA2_TM      Ephrin type-A receptor 2 transmembrane domain
      0.049   13.9   3.0      0.058   13.6   3.0    1.1  1  DUF4293       Domain of unknown function (DUF4293)
       0.14   11.5   0.3       0.16   11.2   0.3    1.0  1  Tmpp129       Putative transmembrane protein precursor
       0.21   11.7   5.6       0.27   11.4   5.6    1.1  1  DHHC          DHHC palmitoyltransferase
       0.21   11.2   1.4        0.3   10.7   1.4    1.2  1  DUF4131       Domain of unknown function (DUF4131)
          1    9.5   6.6        3.6    7.7   0.1    2.1  2  TssO          Type VI secretion system, TssO
          1    9.8   5.0       0.67   10.4   1.1    2.0  2  Ycf70         Uncharacterized Ycf70-like
        5.5    6.9   6.3          2    8.4   0.4    2.2  2  YajC          Preprotein translocase subunit
        5.6    7.8   6.9    1.5e+02    3.2   6.9    2.1  1  Cadherin_C_2  Cadherin cytoplasmic C-terminal


Domain annotation for each model (and alignments):
>> SecG  Preprotein translocase SecG subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7  11.7   4.1e-21   6.1e-18       1      70 []       8      76 ..       8      76 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 4.1e-21
                HHHHHHHHHHHHHHHHHHHCHHCCSCCHHTT...SS-SS--SSCCCHHCCHHHHHHHHHHHHHHHHHHC- CS
        SecG  1 illillvivsilLillvLlQsgkgaglsgafgggasdslfgsrgaekfLtkiTvilavlFfvlslvlall 70
                ++l++++i++i+L++++L+Q++k++gl++afg++ +d+lfg   + ++L kiTv+l+ +Ff+ls++la+l
  CCG91621.1  8 FFLVIYIITCIFLVFVILMQRSKQEGLGAAFGSSVTDTLFG-AHTSSILIKITVWLSGIFFFLSILLAFL 76
                799****************************7766688995.78999********************985 PP

>> 2TM  2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.2   2.8e-05     0.042      17      58 ..      10      77 ..       6     100 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.8e-05
         2TM 17 lvvYlivniflilinl........................gsswflwpilfW..giglllhalkvFgt 58
                lv+Y+i  ifl+++ l                        + s +l+ i++W  gi+++l  l +F++
  CCG91621.1 10 LVIYIITCIFLVFVILmqrskqeglgaafgssvtdtlfgaHTSSILIKITVWlsGIFFFLSILLAFLY 77
                89************667777778878777776666666543333466667777799999999999984 PP

>> DUF3810  Protein of unknown function (DUF3810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   2.3e-05     0.034      27      96 ..       8      90 ..       1     103 [. 0.66

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.3e-05
     DUF3810 27 llivllillvilylvlaiklkkrkkkkkrllk.................vllrvllvllvvyflftllwglnYyreplserlglkke 96
                +++v+ i+ +i+++++++ +++ k+  + l                   +l+++ + l+ ++f+  +l +++Y     s+++ ++++
  CCG91621.1  8 FFLVIYIITCIFLVFVIL-MQRSKQ--EGLGAafgssvtdtlfgahtssILIKITVWLSGIFFFLSILLAFLYAHRASSQTT-IQQK 90
                455666666666666666.222222..2222245678888888888888999999999999999999999999888777766.4333 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1      0.01        15       8      29 ..      10      31 ..       4      50 .. 0.56
   2 ?    7.2   0.0    0.0062       9.3       3      42 ..      59      95 ..      57     106 .] 0.57

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.01
    EphA2_TM  8 glvllvilvilvlvlvrrrskn 29
                 ++ +++ + lv+v++ +rsk+
  CCG91621.1 10 LVIYIITCIFLVFVILMQRSKQ 31
                2233333333333333344333 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0062
    EphA2_TM  3 aaavaglvllvilvilvlvlvrrrsknrkqksdlkskeek 42
                ++++ g+++++++++ +l+  +r s++ + +++l  ++++
  CCG91621.1 59 TVWLSGIFFFLSILLAFLY-AHRASSQTTIQQKL--HKAD 95
                6788999999996665555.55555555555544..2222 PP

>> DUF4293  Domain of unknown function (DUF4293)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   3.0   3.9e-05     0.058       8      79 ..       9      81 ..       7      92 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.9e-05
     DUF4293  8 yLllaailmaaflflplasivtedel.lsfyalgvstaeaetsvnvsvwvlvilllliailaliaIflyknRk 79
                +L++ +i++++++f+ l++  ++++l ++f + ++ t  ++++ +  + + v l+ +  +l+++  fly +R 
  CCG91621.1  9 FLVIYIITCIFLVFVILMQRSKQEGLgAAFGSSVTDTLFGAHTSSILIKITVWLSGIFFFLSILLAFLYAHRA 81
                6677777666667777777777777785555555555555555555666666666677777777778888886 PP

>> Tmpp129  Putative transmembrane protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00011      0.16      44     118 ..      12      98 ..       5     104 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
     Tmpp129  44 llvhsllplgYflgllllsk............vkaeelleletlwkvllllsvllailalvlvvywsskkwsnhPiakelkklaeet 118
                 + + +++ l+++++++  ++             +    ++ ++l+k++++ls ++++l++ l++ ++++  s+  i ++l+k   e+
  CCG91621.1  12 IYIITCIFLVFVILMQRSKQeglgaafgssvtDTLFGAHTSSILIKITVWLSGIFFFLSILLAFLYAHRASSQTTIQQKLHKADVEQ 98 
                 556677777888888777779999999987652233456678899999********************************9987544 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.6   0.00018      0.27      56     129 ..       8      89 ..       2      94 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
        DHHC  56 lylllllilalvlllialvklveeekkseflavtllkk...........llsilllvlsllfllllgllllfhlylilrnlTtie 129
                 ++l++++i +++l +++   l++ +k++   a++  +            +l  +++ ls +f++l +ll + +   ++ ++T  +
  CCG91621.1   8 FFLVIYIITCIFLVFVI---LMQRSKQEGLGAAFGSSVtdtlfgahtssILIKITVWLSGIFFFLSILLAFLYAHRASSQTTIQQ 89 
                 33444444444444444...44444444444333333355689999998777777888888888777777777777776655444 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.4    0.0002       0.3       4      64 ..       7      92 ..       4     103 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
     DUF4131  4 plalvllalllllllllllllrr.........................rprrrvllllllllllallgfalrapqpnandlsqlle 64
                ++ lv+ ++ +++l++ +l +r+                           + +v+l+ ++++l +ll f++  +  +++ ++q l+
  CCG91621.1  7 GFFLVIYIITCIFLVFVILMQRSkqeglgaafgssvtdtlfgahtssiLIKITVWLSGIFFFLSILLAFLYAHRASSQTTIQQKLH 92
                56677777777777777777766899999999999999999888888844444454444444444444444444444444444443 PP

>> TssO  Type VI secretion system, TssO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   2.4      0.03        45      12      33 ..       8      29 ..       3      33 .. 0.81
   2 ?    7.7   0.1    0.0024       3.6      13      53 ..      62     102 ..      56     106 .] 0.81

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.03
        TssO 12 yflllFlvtvlllflivffffk 33
                +fl+++++t+++l++++ ++ +
  CCG91621.1  8 FFLVIYIITCIFLVFVILMQRS 29
                7999999999999999988765 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0024
        TssO  13 flllFlvtvlllflivffffkssplqekeil.lkelerkkkf 53 
                 + ++F+++++ll  +++    ss+++ +++l ++++e+ +++
  CCG91621.1  62 LSGIFFFLSILLA-FLYAHRASSQTTIQQKLhKADVEQHQTL 102
                 6689999999999.7888888888888888889999998876 PP

>> Ycf70  Uncharacterized Ycf70-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.1   0.00045      0.67      35      58 ..      10      33 ..       1      41 [. 0.84
   2 ?    1.6   0.2      0.25   3.7e+02      30      49 ..      58      77 ..      40     104 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00045
       Ycf70 35 sglyalfcvflvlfiffdsfkqes 58
                  +y++ c+flv++i+++  kqe 
  CCG91621.1 10 LVIYIITCIFLVFVILMQRSKQEG 33
                468******************995 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.25
       Ycf70 30 llvmvsglyalfcvflvlfi 49
                + v +sg++ ++ ++l ++ 
  CCG91621.1 58 ITVWLSGIFFFLSILLAFLY 77
                44556666655555444332 PP

>> YajC  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.4    0.0013         2       3      25 ..       9      31 ..       7      37 .. 0.68
   2 ?    1.5   1.0      0.18   2.7e+02       4      26 ..      67      90 ..      53     102 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0013
        YajC  3 llplvlifvifyfllirpqqkkq 25
                +l++++i +if +++i  q+ kq
  CCG91621.1  9 FLVIYIITCIFLVFVILMQRSKQ 31
                45566777777777777777666 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.18
        YajC  4 lplvlifvifyfllirpqq.kkqk 26
                ++l ++++++y     +q   +qk
  CCG91621.1 67 FFLSILLAFLYAHRASSQTtIQQK 90
                233355555555554444423333 PP

>> Cadherin_C_2  Cadherin cytoplasmic C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   6.9       0.1   1.5e+02       8      25 ..      12      27 ..       6     105 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.1
  Cadherin_C_2  8 iaLasvSflFLltvivlv 25
                  i   +++++FL++vi++ 
    CCG91621.1 12 I--YIITCIFLVFVILMQ 27
                  4..479999*99999983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1122  (0.0625802); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 723.26
//
Query:       CCG91622.1  [L=545]
Description: ABC-type oligopeptide transport system,periplasmic component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-76  257.5   0.0    2.4e-76  257.2   0.0    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f
  ------ inclusion threshold ------
        0.2   11.3   0.0       0.32   10.7   0.0    1.2  1  7tm_4      Olfactory receptor


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.2   0.0   2.6e-80   2.4e-76       1     373 [.      89     462 ..      89     466 .. 0.93

  Alignments for each domain:
  == domain 1  score: 257.2 bits;  conditional E-value: 2.6e-80
                 SEEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC.............TCTEEEEEEEETTEEEEEESSET CS
   SBP_bac_5   1 evvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee.............dqdikkveavddytvrftlkkpn 86 
                 e++p+ Ae+ we s+Dgk y+f+LRk   +++G+p+ A+D+v s++r+ldp+++s+ya+l+++             d + ++++a+    +++ l+ p 
  CCG91622.1  89 EIIPGTAER-WECSPDGKCYRFYLRK-TFWTNGKPVEAKDFVLSWKRALDPNQGSRYADLFFWitnaksyyegkinDFSLVGIKAIGQSILEVQLEDPI 185
                 689******.7***************.9*********************************99************************************ PP

                 TTTTTHCHHHHHHHGCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCT CS
   SBP_bac_5  87 alfltllaavpasiakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaepppsd 185
                 + fl+l+a++   +    + +   +d+ +  k v++GPY l+e+k +++ivl++np+Yw ++  k +++ + + ++++++ + +  G +d + +   + 
  CCG91622.1 186 PFFLQLVAEPVFFPLPIDTINVYGEDWIKVGKIVSNGPYILDEWKINDRIVLKKNPYYWAQSSIKTKELDLLTTTKASTAFNLFYCGIADLILD--KGL 282
                 *************999888899999**********************************88999**********9999999999*****99953..444 PP

                 HCHHHHHTTEEE..EEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHHHT CS
   SBP_bac_5 186 ieqlkeakglkv..lyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLkea 282
                 +++++ +k  ++  +++sp   +++++fNt+++p++d r+R Al++AiD+  +v+++ +g+  pa s++pp++pg++ +      +y+p+ AkklL+ea
  CCG91622.1 283 VPTFFIEKIRQKpyFHSSPIFATYFYRFNTQHKPLNDSRIRCALAMAIDKSRLVRIITRGGELPAGSITPPGIPGYNSPSGL---PYNPTMAKKLLAEA 378
                 44444444444444677***********************************************************877766...79************ PP

                 T-BCSSTSCEETCEEEEEEEEETTSHHHHHHHHHHHHHHHH.TTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTT CS
   SBP_bac_5 283 Gykdgdggglrekklkltlllasgspaekaiaeliqqqlkk.iGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsss 373
                 Gy++g+g        + + +l+++++++++ia+ iq+++++ +Gi+v +++ +w ++yl++ ++ dfd++ ++w +dy+dp +fln f+  s
  CCG91622.1 379 GYPNGKG-------FPPLSILYNSGELNEQIATEIQAMWQEnLGIHVGLRNQEW-KVYLNSLSQLDFDIARSSWVGDYADPTTFLNLFTQFS 462
                 *****86.......589999**********************************.*******************************997655 PP

>> 7tm_4  Olfactory receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.5e-05      0.32      27     108 ..     240     325 ..     229     340 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.5e-05
       7tm_4  27 qPmylflamlalidlglsast.lptvlGiflvelreisleaclaqsffihkls...llesavllamavdrfvaicsplryssiltn 108
                 +P y+  + +   +l l ++t   t + +f++++ ++ l+  l+++ffi k+     ++s+ + a+ + rf +  +pl+ s i   
  CCG91622.1 240 NPYYWAQSSIKTKELDLLTTTkASTAFNLFYCGIADLILDKGLVPTFFIEKIRqkpYFHSSPIFATYFYRFNTQHKPLNDSRIRCA 325
                 466666677777788765555267999**********************99863336789999999999**********9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4131.58
//
Query:       CCG91623.1  [L=192]
Description: Alpha/beta hydrolase superfamily protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.019   13.9   0.0      0.027   13.4   0.0    1.1  1  Chlorophyllase2  Chlorophyllase enzyme
      0.056   13.6   0.0      0.078   13.1   0.0    1.2  1  Thioesterase     Thioesterase domain
       0.19   11.2   0.0       0.25   10.9   0.0    1.2  1  PE-PPE           PE-PPE domain
        0.2   11.0   0.0       0.29   10.5   0.0    1.2  1  DUF2235          Uncharacterized alpha/beta hydrolase domain 


Domain annotation for each model (and alignments):
>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.9e-06     0.027      86     142 ..      63     118 ..      51     130 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.9e-06
  Chlorophyllase2  86 epdlsklalsgHSrGgktafalalgkaktslkfsaligvdPvagaskskqtepkiLt 142
                      +   s+l++ g SrG+  a++l    +k + k+  l  +dP+a+ ++  +++ ++++
       CCG91623.1  63 KKTDSSLTIFGYSRGAISAINLCKMLTK-QKKVDFLYLIDPIAYFTNRLRIPENVIQ 118
                      5566899***************999888.889************9999999999886 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.7e-05     0.078      62     103 ..      65     102 ..      56     115 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.7e-05
                   H-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEEEEESCC CS
  Thioesterase  62 iqpegPyalfGhSlGgllAfevArqLesqGlavkslflidss 103
                   +     +++fG+S G++ A  +++ L +q  +v +l lid +
    CCG91623.1  65 TDS--SLTIFGYSRGAISAINLCKMLTKQK-KVDFLYLID-P 102
                   444..499******************9995.799999999.4 PP

>> PE-PPE  PE-PPE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.5e-05      0.25      41      86 ..      60      99 ..      51     134 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.5e-05
      PE-PPE 41 raelaagekvvvfGySqgalvasnekarlaalsepaapdqlsfvlv 86
                +a +++++++++fGyS ga+ a n  + l+++      +++ f+ +
  CCG91623.1 60 NACKKTDSSLTIFGYSRGAISAINLCKMLTKQ------KKVDFLYL 99
                444558999**********9999888888871......34555555 PP

>> DUF2235  Uncharacterized alpha/beta hydrolase domain (DUF2235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   6.4e-05      0.29      94     119 ..      64      90 ..      55      95 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.4e-05
     DUF2235  94 pgD.eIylfGFSRGAytaRalagmlek 119
                 + D  + +fG+SRGA  a  l +ml+k
  CCG91623.1  64 KTDsSLTIFGYSRGAISAINLCKMLTK 90 
                 4443789*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1342.93
//
Query:       CCG91624.1  [L=914]
Description: aconitate hydratase 1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.4e-169  565.0   0.0   1.8e-169  564.6   0.0    1.1  1  Aconitase    Aconitase family (aconitate hydratase)
    1.5e-43  148.3   0.0    2.6e-43  147.5   0.0    1.4  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  564.6   0.0    2e-173  1.8e-169      12     461 .]      79     577 ..      63     577 .. 0.93

  Alignments for each domain:
  == domain 1  score: 564.6 bits;  conditional E-value: 2e-173
   Aconitase  12 egiayvpdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsv.....gaeealeknledefernkeryefLksaakaf.girvvpp 104
                 ++i++ + r+llqd+tgv+ lvdlaa+r+ v+++g+++++i++l+pvdlv+dhs+     g + a++ nle+e+ernkery+fLk+a++af g+r++pp
  CCG91624.1  79 DEIPFYVGRILLQDFTGVPLLVDLAAMRDVVQKVGKDPRSIEPLIPVDLVVDHSIqvdafGIKGAFQYNLEKELERNKERYSFLKWAQSAFsGLRIFPP 177
                 4489999************************************************999999999*********************************** PP

   Aconitase 105 gqGIvHqvnlEy.............glalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavig 190
                 g GI+HqvnlEy              +++p+ t++gtDSHTtmi+glG++++GvGgieaea++lg+p+++++p+vvgv+l G+lkegv a+Dlvla+++
  CCG91624.1 178 GIGICHQVNLEYlakgvlskkegqrTVLYPD-TLLGTDSHTTMINGLGIVGWGVGGIEAEAAMLGEPYYISLPEVVGVRLIGTLKEGVIATDLVLALTE 275
                 ***************9999999665599***.******************************************************************* PP

   Aconitase 191 klrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaav.lveaydkaqalfela.adedaeydkvleldlstl 287
                 +lr++gvvgk+vEffG+g+ sLs+ draTiaNMa+E+GAt+g+fp+de++l Y+k+tgre++ + l+e+y kaq+lf +  +++d +y++v+e+dl ++
  CCG91624.1 276 RLRQEGVVGKIVEFFGPGILSLSVPDRATIANMAPEYGATMGFFPIDEQVLFYFKQTGREQHWIdLIEKYYKAQNLFGVPtETSDITYSHVFEFDLGNV 374
                 ****************************************************************9************87725569************** PP

   Aconitase 288 epsvagpkrPqdavplselvkkefkeele.............keaaekaley......klkegtklkdgkvdiaaigSCTNssnedvraaaglla.kav 366
                 +psvagp rPqd+++l ++ +++f + l+             +   e+++++      +++ +t++ dg+++iaai+SCTN+sn+  ++aaglla kav
  CCG91624.1 375 KPSVAGPRRPQDRISL-SELPQKFYSLLTrsalsqgygktpqQ--IEEKYRIhsypfrHDNGQTEIGDGSIVIAAITSCTNTSNPIAMIAAGLLAkKAV 470
                 ****************.55555677766678899****99651..444444444566666779************************************ PP

   Aconitase 367 ekglkvkpgvktsvaPGSevvkayleaeGlleiLekaGfevvgagCstCignsdrle...ege.........aivsssNRNFegRqgpntra.yLaSPe 452
                  kglkv   vkts+aPGS+vv++yl ++Gl+e L+++Gf++vg+gC+tCigns++++   e +         a+v+s+NRNFe+R++p+++a +L+SP+
  CCG91624.1 471 LKGLKVPGFVKTSLAPGSRVVEDYLLKSGLQEFLDQLGFNIVGFGCTTCIGNSGPISeeiE-QtikmhdlvvASVLSGNRNFEARIHPSVKAnFLMSPP 568
                 *******************************************************985551.1566777999*************************** PP

   Aconitase 453 lvvaaAlaG 461
                 lv+a+AlaG
  CCG91624.1 569 LVIAYALAG 577
                 ********9 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   0.0   2.9e-47   2.6e-43       3     129 ..     708     834 ..     706     836 .. 0.98

  Alignments for each domain:
  == domain 1  score: 147.5 bits;  conditional E-value: 2.9e-47
                  CCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHHHT CS
  Aconitase_C   3 kllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalrll 100
                   +l +kG++ +d++s ++++++++++++gt+ n++l+n +v +k+ + t++++dg+++++++aa+ yk+e+ +l+v agk++G+GSSR++AAk+ +ll
   CCG91624.1 708 HYLLEKGVAFQDFNSFGSRRGNHHVMVRGTFGNVRLKNFMVGGKEGGITRHMPDGKEMSIYEAAMLYKEEQVPLIVFAGKEYGSGSSRDWAAKGVKLL 805
                  58889********************************************************************************************* PP

                  TEEEEEES-B-HHHHHHHHHTT-EEEEES CS
  Aconitase_C 101 GikaviaeSFerIfennliknglLplefk 129
                  G+kaviaeSFerI+++nli++g+Lpl+f+
   CCG91624.1 806 GVKAVIAESFERIHRSNLIGMGVLPLQFE 834
                  ***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (914 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 5893.18
//
Query:       CCG91625.1  [L=237]
Description: Mn-dependent transcriptional regulator MntR [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-29   99.9   0.9    1.2e-28   99.0   0.9    1.5  1  Fe_dep_repr_C   Iron dependent repressor, metal binding and d
    1.1e-15   57.6   2.6    4.6e-15   55.6   0.2    2.7  3  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
    1.5e-07   31.2   0.1    3.5e-06   26.9   0.0    2.8  3  MarR            MarR family
    3.2e-06   26.9   0.1    1.5e-05   24.7   0.0    2.1  2  MarR_2          MarR family
    7.3e-06   26.2   0.0    4.6e-05   23.6   0.0    2.2  2  FeoA            FeoA domain
    0.00014   21.6   0.6     0.0013   18.4   0.0    2.5  2  HTH_IclR        IclR helix-turn-helix domain
    0.00018   21.5   0.1     0.0004   20.4   0.1    1.6  1  DUF2250         Uncharacterized protein conserved in archaea 
    0.00031   21.2   0.0    0.00068   20.1   0.0    1.6  1  HTH_27          Winged helix DNA-binding domain
    0.00038   20.4   0.5      0.012   15.6   0.0    2.9  2  HTH_Crp_2       Crp-like helix-turn-helix domain
    0.00058   19.4   0.0     0.0019   17.7   0.0    2.0  1  HTH_24          Winged helix-turn-helix DNA-binding
    0.00064   19.5   0.0     0.0014   18.4   0.0    1.6  1  TrmB            Sugar-specific transcriptional regulator TrmB
     0.0016   17.5   0.2     0.0036   16.4   0.1    1.6  2  Topoisom_bac    DNA topoisomerase
     0.0024   17.9   0.1      0.015   15.3   0.0    2.3  2  HTH_20          Helix-turn-helix domain
     0.0025   17.4   0.4     0.0055   16.3   0.0    1.8  1  GntR            Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
      0.045   13.9   0.0      0.087   13.0   0.0    1.4  1  B-block_TFIIIC  B-block binding subunit of TFIIIC
      0.051   13.2   0.1       0.14   11.9   0.1    1.7  1  HrcA_DNA-bdg    Winged helix-turn-helix transcription repress
        0.1   12.7   0.1       0.43   10.7   0.0    2.2  3  HemN_C          HemN C-terminal domain
       0.11   12.5   0.4       0.41   10.6   0.0    2.0  2  HTH_11          HTH domain
       0.13   12.2   0.1       0.32   11.0   0.0    1.6  1  Dimerisation2   Dimerisation domain


Domain annotation for each model (and alignments):
>> Fe_dep_repr_C  Iron dependent repressor, metal binding and dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.9   1.3e-31   1.2e-28       1      69 [.      73     141 ..      73     142 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 1.3e-31
                    -HHHHHHHHHHHHHHHHHHHHHHHHCT--CCCHHHHCCCCGGGS-HHHHHHHHHHCT-.SB-TTS-B-- CS
  Fe_dep_repr_C   1 TekGrelAkrlvrrhrllerfLvdvlgvdweeaheeAerlEhalseelierldellgfpeecPhgdpip 69 
                    Te G+++A++++r+hrlle+fL+++lg+  +e+h eAerlEh++se++++++ ++lg+p+++Phgdpip
     CCG91625.1  73 TEAGNRVALEILRHHRLLETFLAEKLGYRLDEVHGEAERLEHVISEQFEKAIARMLGHPRRDPHGDPIP 141
                    9*******************************************************************9 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.2   4.8e-18   4.6e-15       2      59 ..      12      69 ..      11      70 .. 0.97
   2 ?   -1.6   0.0       3.5   3.3e+03      11      27 ..     154     171 ..     149     175 .. 0.79
   3 ?    0.8   0.1      0.62   5.9e+02      25      40 ..     217     232 ..     205     233 .. 0.77

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 4.8e-18
                    --HHHHHHHHHHHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTE CS
  Fe_dep_repress  2 LvestEdYLetIYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyveyekykg 59
                    L++s EdYL+ I+ lse +++v+t  la+ ++v+ +sV+ m+kkL + G+v+ ++y++
      CCG91625.1 12 LSTSQEDYLKEIFLLSERGEPVTTLALAQKIGVKSASVTDMIKKLVELGLVQRKPYQA 69
                    899*****************************************************87 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.5
                     HHHHHHHH.HHSSB-HHH CS
  Fe_dep_repress  11 etIYtlse.ekkvvktkd 27 
                     +t+Y+l++ +++ +++ +
      CCG91625.1 154 RTLYSLKKgDRAQITRIM 171
                     799999998877777655 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.62
                     HHHHHHHHTS-HHHHH CS
  Fe_dep_repress  25 tkdlaerLnvspssVs 40 
                     +  ++e++ + pss +
      CCG91625.1 217 PLSISEEIMIVPSSLT 232
                     5689*********976 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   3.7e-09   3.5e-06      11      51 ..      25      66 ..      21      68 .. 0.87
   2 ?    0.7   0.0      0.53     5e+02      27      43 ..     184     200 ..     181     200 .. 0.88
   3 ?   -2.7   0.0       6.1   5.7e+03      16      35 ..     212     232 ..     206     233 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.7e-09
                HHHHSTTEEHH.HHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR 11 ilyeqgplsvs.eLakklgvskstvtrvldrLekkGlieRsk 51
                +l+e+g++  +  La k+gv++++vt ++++L++ Gl++R++
  CCG91625.1 25 LLSERGEPVTTlALAQKIGVKSASVTDMIKKLVELGLVQRKP 66
                6777777555559***************************86 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.53
                 HTS-HHHHHHHHHHHHH CS
        MarR  27 lgvskstvtrvldrLek 43 
                 l++ ++t+ +vld+ e+
  CCG91625.1 184 LNLLPGTIITVLDKFED 200
                 8899**********996 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 6.1
                 TTEEHH.HHHHHHTS-HHHHH CS
        MarR  16 gplsvs.eLakklgvskstvt 35 
                  p+++   + + +++ +s++t
  CCG91625.1 212 KPIKIPlSISEEIMIVPSSLT 232
                 555555678889999999988 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.6e-08   1.5e-05      13      55 ..      25      66 ..      22      69 .. 0.87
   2 ?   -3.0   0.0       7.7   7.3e+03      26      34 ..     123     131 ..     122     132 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.6e-08
                HHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2 13 aLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrp 55
                 L  r+++ +t  +la++ g++ ++v+ ++k+Lv+ GLv+r+p
  CCG91625.1 25 LLSERGEP-VTTLALAQKIGVKSASVTDMIKKLVELGLVQRKP 66
                56666665.9999***************************997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.7
                 HHHHHHTSS CS
      MarR_2  26 elarrlgls 34 
                 ++ar lg++
  CCG91625.1 123 AIARMLGHP 131
                 699999986 PP

>> FeoA  FeoA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.3   1.2e+03      22      34 ..      50      62 ..      32      82 .. 0.78
   2 !   23.6   0.0   4.9e-08   4.6e-05       1      72 [.     154     226 ..     154     228 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.3
                SSHHHHHHHHT-- CS
        FeoA 22 pellrrLremGlv 34
                +++ ++L e+Glv
  CCG91625.1 50 TDMIKKLVELGLV 62
                4677888888886 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 4.9e-08
                 EEGGG--TT-EEEEEEE-TT.SSHHHHHHHHT--TT-EEEEEEE-TTS-SEEEEE..T.TEEEEE-HHHHTTEEE CS
        FeoA   1 vpLsdlkeGergeiarisdedpellrrLremGlvpGarievvarapfggplvvrv..g.dtrvaLgreeAqaIlV 72 
                 ++L  lk+G+r+ i+ri  +d++ l+ ++ + l pG+ i+v++  +f + +++ +  + ++ + ++ ++ + I++
  CCG91625.1 154 RTLYSLKKGDRAQITRIMLQDRQSLKHFKTLNLLPGTIITVLD--KFEDCMQLSIlgQeQKPIKIPLSISEEIMI 226
                 6899**************************************6..577877777744324447788888887776 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.4e-06    0.0013      11      51 ..      25      65 ..      24      66 .. 0.94
   2 ?    0.4   0.2      0.63   5.9e+02      36      46 ..      87      97 ..      80      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.4e-06
                T-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR 11 alaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                +l+e+++++t   lA+++g+  ++v  +++ LvelG+v++ 
  CCG91625.1 25 LLSERGEPVTTLALAQKIGVKSASVTDMIKKLVELGLVQRK 65
                588999999999**************************986 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.63
                HHHHHHHHHTT CS
    HTH_IclR 36 hRlLqtLvelG 46
                hRlL t+  ++
  CCG91625.1 87 HRLLETFLAEK 97
                99999988776 PP

>> DUF2250  Uncharacterized protein conserved in archaea (DUF2250)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   4.2e-07    0.0004      26      78 ..      36      88 ..      12      91 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.2e-07
     DUF2250 26 ksiakeleipleevrellkkLeelGLlervegktikrteaklKkksevhkhHt 78
                + +a+++ ++   v++++kkL elGL++r+  ++i  tea  + + e  +hH 
  CCG91625.1 36 LALAQKIGVKSASVTDMIKKLVELGLVQRKPYQAIYLTEAGNRVALEILRHHR 88
                56789999999*****************************************6 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   7.2e-07   0.00068      11      66 ..      25      74 ..      14      76 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 7.2e-07
      HTH_27 11 lirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTd 66
                l+ +r+++++  +l+++  v ++++  ++kkL+e GLv+r+++        + lT+
  CCG91625.1 25 LLSERGEPVTTLALAQKIGVKSASVTDMIKKLVELGLVQRKPYQ------AIYLTE 74
                55689999999***************************988875......555555 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.3e-05     0.012      21      57 ..      32      70 ..       3      76 .. 0.83
   2 ?    1.9   0.0      0.24   2.2e+02      37      67 ..     151     180 ..     145     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-05
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET.EE.E CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisrg.rr.i 57
                p+t   lA+ +G+   +v+ ++++L + gl++r+ ++ i
  CCG91625.1 32 PVTTLALAQKIGVKSASVTDMIKKLVELGLVQRKpYQaI 70
                89999***************************7634445 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHTTSEEETEEEEES-HHHHHH CS
   HTH_Crp_2  37 tvsrilseLkreglisrgrririldleaLra 67 
                 t+ r+l  Lk+    +  r i + d++ L++
  CCG91625.1 151 TTERTLYSLKKGDRAQITR-IMLQDRQSLKH 180
                 8889999999999999887.*******9986 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     2e-06    0.0019      18      47 ..      33      62 ..      23      63 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2e-06
      HTH_24 18 isqreLAerlglSpstvnrrlkrLeeeGlI 47
                 +   LA+++g+ ++ v+  +k+L+e Gl+
  CCG91625.1 33 VTTLALAQKIGVKSASVTDMIKKLVELGLV 62
                78889************************9 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.5e-06    0.0014      21      56 ..      31      66 ..      23      75 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.5e-06
                CCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEES CS
        TrmB 21 gpatadeiaeelgvprskvYevLrsLedkGlVerek 56
                +p t+  +a+++gv  ++v +++++L++ GlV+r++
  CCG91625.1 31 EPVTTLALAQKIGVKSASVTDMIKKLVELGLVQRKP 66
                6899999**************************986 PP

>> Topoisom_bac  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   3.8e-06    0.0036     339     411 ..      41     115 ..       5     117 .. 0.82
   2 ?   -1.9   0.0       1.3   1.3e+03     290     319 ..     150     176 ..     142     180 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.8e-06
  Topoisom_bac 339 giG.tpaTraeiieklvergYverkk.kslvptelGkalvellekfkdlvspelTaeleekLdeIaegkadakev 411
                   +iG   a+  ++i+klve g v+rk  ++++ te G++++  + + ++l +  l  +l  +Lde+    +  ++v
    CCG91625.1  41 KIGvKSASVTDMIKKLVELGLVQRKPyQAIYLTEAGNRVALEILRHHRLLETFLAEKLGYRLDEVHGEAERLEHV 115
                   67723578999**************99************97775569******************8777776666 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
  Topoisom_bac 290 ekkeeeeeelpelkegeevkvkeveleekk 319
                   + +e   ++l +lk+g++ +++ + l++++
    CCG91625.1 150 DTTE---RTLYSLKKGDRAQITRIMLQDRQ 176
                   3333...46999999999999998888766 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.6e-05     0.015      20      55 ..      28      63 ..      17      66 .. 0.89
   2 ?   -0.7   0.1       1.6   1.5e+03       9      34 ..      77     102 ..      71     114 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-05
                STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
      HTH_20 20 araegltaselaerldlskntlsyHLrvLeeagLve 55
                 r+e++t  +la+ ++++ +++ + +++L+e gLv 
  CCG91625.1 28 ERGEPVTTLALAQKIGVKSASVTDMIKKLVELGLVQ 63
                689*******************************96 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.6
                 -HHHHHHHHHHSTCTTB-HHHHHHHH CS
      HTH_20   9 hPvRrrilraLaraegltaselaerl 34 
                 ++v ++ilr+ +  e + a+ l  rl
  CCG91625.1  77 NRVALEILRHHRLLETFLAEKLGYRL 102
                 66777788776666666666666665 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.9e-06    0.0055      21      63 ..      30      71 ..      25      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.9e-06
                TSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEE CS
        GntR 21 GdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtf 63
                G++  +  +La+++gV+  +v   +++L++ glv+r++ ++++
  CCG91625.1 30 GEPV-TTLALAQKIGVKSASVTDMIKKLVELGLVQRKPYQAIY 71
                5566.6669****************************988776 PP

>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.2e-05     0.087      19      54 ..      33      68 ..      27      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.2e-05
  B-block_TFIIIC 19 itqsdLakeskqdprslfyrlksLekkgLIvkqsii 54
                    +t+  La+ ++ ++ s++  +k+L + gL+ ++++ 
      CCG91625.1 33 VTTLALAQKIGVKSASVTDMIKKLVELGLVQRKPYQ 68
                    6777899*************************9983 PP

>> HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor, HrcA DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00015      0.14       1      57 [.      11      66 ..      11      68 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
  HrcA_DNA-bdg  1 eLtsvqkeilqaLielyrkkkravKgeeiAevlkrneGtvRNqlqsLkalgLvegvp 57
                  +L+++q++ l+++  l  +++++v +  +A++++ ++  v  +++ L  lgLv+ +p
    CCG91625.1 11 QLSTSQEDYLKEIF-LLSERGEPVTTLALAQKIGVKSASVTDMIKKLVELGLVQRKP 66
                  58999999999965.6677899*******************************9887 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00045      0.43      19      64 ..      31      76 ..      14      77 .. 0.78
   2 ?   -2.9   0.0       7.8   7.4e+03      25      42 ..     111     124 ..     108     129 .. 0.55
   3 ?   -2.6   0.0       6.5   6.1e+03      13      30 ..     168     185 ..     167     200 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00045
      HemN_C 19 eGldlaafeqrfgldleellaaaleklqeqGLLeldg.grlrltprG 64
                e +   a++q++g+  ++++ + ++kl e GL++    + + lt++G
  CCG91625.1 31 EPVTTLALAQKIGVK-SASVTDMIKKLVELGLVQRKPyQAIYLTEAG 76
                4677789*******9.8888*************87767777777766 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.8
      HemN_C  25 afeqrfgldleellaaal 42 
                 ++e+ + +++e++    +
  CCG91625.1 111 RLEHVISEQFEKA----I 124
                 5666666665554....3 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 6.5
      HemN_C  13 lgLRlreGldlaafeqrf 30 
                  +++l++  +l++f++++
  CCG91625.1 168 TRIMLQDRQSLKHFKTLN 185
                 577888888888887654 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00043      0.41       7      43 ..      24      60 ..      19      70 .. 0.83
   2 ?   -1.8   0.1       3.2     3e+03       6      26 ..      81      99 ..      79      99 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00043
      HTH_11  7 elLleargp.isgeeLAeeLnvSrrtvrrdIkaLeelg 43
                 lL ++rg  ++   LA++++v  + v   Ik+L elg
  CCG91625.1 24 FLL-SERGEpVTTLALAQKIGVKSASVTDMIKKLVELG 60
                455.555555************************9998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.2
      HTH_11  6 lelLleargpisgeeLAeeLn 26
                le+L+++r  +   +LAe+L+
  CCG91625.1 81 LEILRHHR--LLETFLAEKLG 99
                56665554..56678899886 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00034      0.32      26      65 ..      25      65 ..      21      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00034
  Dimerisation2 26 lLke.eeplsaeevaeelgasvkGterLldacvaLgLLere 65
                   lL e  ep+++ ++a+++g+++ +++ +++ +v LgL +r+
     CCG91625.1 25 LLSErGEPVTTLALAQKIGVKSASVTDMIKKLVELGLVQRK 65
                   4556699*******************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1435.18
//
Query:       CCG91626.1  [L=437]
Description: putative manganese transport protein mntH [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-115  386.4  25.7   1.5e-115  386.0  25.7    1.2  1  Nramp     Natural resistance-associated macrophage protein


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  386.0  25.7  8.4e-120  1.5e-115       2     357 ..      59     407 ..      58     408 .. 0.98

  Alignments for each domain:
  == domain 1  score: 386.0 bits;  conditional E-value: 8.4e-120
       Nramp   2 atdlqaGaqfGykLlwvlllstllaillqelsarLGlvTgkglaelirerl.pkkvsillwilaelaiiatdlaeviGaAialnllfgipllvgvlita 99 
                 at++++G+++Gy+Llwv+++s+l+ai++q lsa+ G+vTgk+l+e ir+ + ++ +++++wi+ae+++iatdlae+iGaAi++++lfg+pl++g+++ta
  CCG91626.1  59 ATNIESGSKYGYTLLWVVFFSNLMAIFIQWLSAKVGMVTGKNLPEWIRDSIqSPFFRYFYWIQAEIMAIATDLAEFIGAAIGFKILFGFPLIWGACLTA 157
                 8**************************************************66889******************************************* PP

       Nramp 100 vlvllllflekggyrklEaliialvlvialsFiaelflvkpdwgevlkglvvPslpgkeslllavgilGatvmphnlflhsslvqerkitidrsekeea 198
                 + + ++l+l+k+g+r +E ++ a+v+++al++++elf+++pd +++l gl++P ++++es++la+gilGatvmph+++lhs+l+q+r  t+d  +k++ 
  CCG91626.1 158 ITTSIILYLQKRGFRLMELIVGAFVGIVALCYLLELFIAHPDRSAILYGLFIPHFQSPESIYLAAGILGATVMPHAIYLHSALTQDRISTTDCLSKKKL 256
                 ****************************************************************************************9987777778* PP

       Nramp 199 lkyeriDtiialivaflinlailivaAavlysggkdvesledaaeaLepllGskaasvlFaigLlaaGlsStitgtlagqyvmegflglrislwlrrli 297
                 l+y+ +D+++a+ +a+ +n+a+liv+Aa++y+g+ + + le a+++L p lG ++as++F++ Lla+G+sS+ +gtlagq++m+gf+++  ++w rrl+
  CCG91626.1 257 LQYSLVDVFLAMGIAGGVNMAMLIVSAAIFYQGNIAPNGLEMAYQTLIPALG-SFASTIFGLSLLASGISSSAVGTLAGQVIMQGFVHFTFPIWFRRLF 354
                 ****************************************************.6*******************************************99 PP

       Nramp 298 tralafvpalivilligaelelvkllvlsqvllslllPfaliplllltsskklMGefkns 357
                 t    + pa++ ill+ ++++   l+++sqv+ls+++ faliplll+ ++k++MG f  s
  CCG91626.1 355 T----MLPAIFSILLGIDSTK---LMIFSQVVLSFGIGFALIPLLLVNQNKTIMGVFSAS 407
                 9....**************99...********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3235.60
//
Query:       CCG91627.1  [L=654]
Description: 1,4-alpha-glucan-branching enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-23   80.4   0.0    2.6e-22   79.1   0.0    1.8  1  Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
    3.3e-19   69.0   0.1    8.4e-19   67.7   0.1    1.8  1  CBM_48           Carbohydrate-binding module 48 (Isoamylase N
    1.1e-12   48.2   0.2      6e-09   35.9   0.1    2.9  2  Alpha-amylase    Alpha amylase, catalytic domain
  ------ inclusion threshold ------
       0.02   15.0   0.0      0.091   12.9   0.0    2.1  1  Malt_amylase_C   Maltogenic Amylase, C-terminal domain
      0.033   12.4   0.0      0.055   11.7   0.0    1.2  1  Glyco_hydro_70   Glycosyl hydrolase family 70
      0.054   13.7   0.6       0.19   11.9   0.0    2.1  2  AMPK1_CBM        Glycogen recognition site of AMP-activated p
      0.083   12.6   0.3       0.19   11.4   0.3    1.6  1  Oxidored-like    Oxidoreductase-like protein, N-terminal


Domain annotation for each model (and alignments):
>> Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.0     1e-25   2.6e-22       1      95 [.     548     646 ..     548     647 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 1e-25
                      EEEEEETTSSEEEEEECT..TT.EEEEEEE-SSSSEEECEEESSSSSEEEEETTCTTSGCCTTT-SSTSS-EEEECT..TCBSEEEEEEESTTE CS
  Alpha-amylase_C   1 wvsakdeenkviaFeRgd..ge.kllvvfNfhpsnsrqdyrvgvpaagkyrdvlntdaeeyggsglgntgkvvtvdd..dgransltltlpprs 89 
                      w++++d e+++i+F+R++  ++ ++l+vfNf+p ++r +y vgvp +g ++ ++n+da+eyggsglg t+ +++++   +g+++sl+ltlpp++
       CCG91627.1 548 WIDFSDYEKSIISFIRKSpdEKdHILCVFNFTP-VPRLNYLVGVPFDGFWKAIFNSDASEYGGSGLGLTKGEIASPLvwQGQPYSLSLTLPPLA 640
                      ****************99986668*********.*******************************99999999999899*************** PP

                      EEEEEE CS
  Alpha-amylase_C  90 alvlkv 95 
                      ++++k+
       CCG91627.1 641 CIAFKK 646
                      ****97 PP

>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.1   3.3e-22   8.4e-19       1      82 [.      40     123 ..      40     125 .. 0.90

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 3.3e-22
                 TSEEEEESS.C.EEEEEEEE-TTSSEEEEEECGTTTEEECCB-EE.ECGGCEEEEEEETTSTTTT.EEEEEEEETT.SCEEEE--T CS
      CBM_48   1 plGahvsed.e.kgvnfrvwapnAekVslvldfnnwdaeeiplkr.rrtggvWelflpgdlphgslrYkyrvkgps.gekklllDP 82 
                 +lG h ++  + kg +f+vwapnA +Vs++++fn+wd +++p+ + ++++g+We+f+pg +  g+ +Yky +k+++ g   ++ DP
  CCG91627.1  40 KLGSHLTSWeGeKGAYFSVWAPNAASVSVIGSFNQWDPKANPMVSrEDQSGIWEIFIPGVVR-GD-LYKYYIKSKAnGIVTVKGDP 123
                 5888887656569*******************************9999**********9998.66.********997899999998 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   2.3e-12     6e-09      11      81 ..     196     267 ..     193     288 .. 0.93
   2 !    8.6   0.0   0.00047       1.2     145     219 ..     298     372 ..     288     502 .. 0.51

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 2.3e-12
                    CCCCCCT-SCEEE-B-CE-S-.TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTS CS
  Alpha-amylase  11 dYlkeLGvtaiwlsPifkspq.adhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdeh 81 
                    +Y+ke+G++ +   P+++ p+    gY    y + + +fGt +d+  Li+ +h +gi vilD V+ H +++ 
     CCG91627.1 196 KYVKEMGFSHVEFLPVMEHPYyGSWGYQCLGYFAPTSRFGTPQDFMFLIDYLHRNGIGVILDWVPSHFATDG 267
                    6*****************9953689******************************************99875 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00047
                    -TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCCHCCHCCHHH.HHHHHHHHTCCGTT-EEEEE-TT-SC CS
  Alpha-amylase 145 nteneevrkelkdvvkfwlekg.idGfRlDvvkhvskvealesngeflhe.ftqalnetvasrkevmtvgEvssdas 219
                    n+ + ev++ l   ++fw+ek  +d +R+D+v  +   +  ++ ge++ + +  + n   +    + t+ E+  ++ 
     CCG91627.1 298 NYGRYEVKEFLISSARFWIEKYhADALRIDAVASMLYLDYSRKPGEWIPNkYGGNEN--LEAIAFLRTLSETLYQEF 372
                    77888999999999******999*********9998877777777766431222222..223445555555555444 PP

>> Malt_amylase_C  Maltogenic Amylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.6e-05     0.091      11      34 ..     556     581 ..     550     587 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.6e-05
                     TTEEEEEEEETT..EEEEEEEESS-E CS
  Malt_amylase_C  11 rkvlaYlReyed..etilvvaNrsaq 34 
                     ++++ ++R+++d  ++il+v+N+++ 
      CCG91627.1 556 KSIISFIRKSPDekDHILCVFNFTPV 581
                     689******9997789******9875 PP

>> Glyco_hydro_70  Glycosyl hydrolase family 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.2e-05     0.055     634     665 ..     231     262 ..     211     268 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.2e-05
  Glyco_hydro_70 634 pnkyGtaddlvdaikalhksGikviadwvpdq 665
                     ++++Gt +d++  i  lh++Gi vi dwvp  
      CCG91627.1 231 TSRFGTPQDFMFLIDYLHRNGIGVILDWVPSH 262
                     468***************************75 PP

>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.6e-05      0.19       6      35 ..      58      88 ..      55     113 .. 0.68
   2 ?   -1.7   0.1       1.3   3.4e+03      18      28 ..     495     505 ..     484     521 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.6e-05
   AMPK1_CBM  6 kWkggGkkVyvtGsfnnWkkk.ipLkksekd 35
                 W  ++ +V v Gsfn+W  k  p++++e++
  CCG91627.1 58 VWAPNAASVSVIGSFNQWDPKaNPMVSREDQ 88
                5999**************7551577744433 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.3
   AMPK1_CBM  18 GsfnnWkkkip 28 
                 G++++W ++  
  CCG91627.1 495 GQWDEWYHEKS 505
                 56666655555 PP

>> Oxidored-like  Oxidoreductase-like protein, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   7.4e-05      0.19      22      43 ..     159     180 ..     156     183 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.4e-05
  Oxidored-like  22 CvnCVwdlYredleewkealke 43 
                    C nC w++Y+  l  w+++++e
     CCG91627.1 159 CLNCPWNIYEVHLGSWQRKKEE 180
                    ******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 4273.60
//
Query:       CCG91628.1  [L=481]
Description: Signal transduction histidine kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-20   72.6   0.6    8.9e-20   71.3   0.3    1.8  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.7e-11   44.0   0.1    7.9e-11   41.8   0.2    2.2  2  HisKA        His Kinase A (phospho-acceptor) domain
     0.0017   18.2   0.0     0.0042   16.9   0.0    1.7  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
     0.0078   16.2   0.0      0.015   15.2   0.0    1.4  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
       0.63    9.6  16.2        0.7    9.4   4.1    3.4  3  4HB_MCP_1    Four helix bundle sensory module for signal tran


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         2     7e+03      39      56 ..     213     245 ..     203     265 .. 0.61
   2 !   71.3   0.3   2.5e-23   8.9e-20       2     108 ..     373     476 ..     372     479 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2
                 EEEEEESSSSSTTHHHT...............G CS
   HATPase_c  39 visveDnGiGipkedlk...............k 56 
                  i+v  nG+  pk+++                +
  CCG91628.1 213 LIEVVENGKAEPKKIIFpsfhgeigklseafaH 245
                 567777777777766555555544444433334 PP

  == domain 2  score: 71.3 bits;  conditional E-value: 2.5e-23
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE..TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikase..ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                 d+++++q+i++l++Na++++ k+g i++  +++   +++ +++ D G+Gip ++++ +f++f +     ++++gtGlGl+i+k+++e+ gG ++++se 
  CCG91628.1 373 DSSQIEQVIIELLTNAINASEKGGLIQIITRSDPvqKEVLLEIVDHGKGIPNAIIDTIFQPFFT-----TSTEGTGLGLAIAKRYSEQNGGLLTIQSEV 466
                 8899**************988999999998863255799*************************.....899***************99********** PP

                 TTEEEEEEEE CS
   HATPase_c  99 grGttftftl 108
                 ++Gt   +++
  CCG91628.1 467 DKGTIASIKF 476
                 ****987765 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.2   2.2e-14   7.9e-11       3      63 ..     267     327 ..     265     329 .. 0.91
   2 ?   -2.8   0.0       1.9     7e+03      23      54 ..     397     426 ..     396     432 .. 0.67

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 2.2e-14
                 HHHHHHHHHHHHHHHHHHHHHHHH.H.HC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       HisKA   3 grflagvaHELrtPLsailgnaea.L.kregklteelkeyletiesearrldhlvedlLdlsr 63 
                 g ++a vaH +++PLs+i++ ae+ L ++  +l+e+ ke l+ i++e++ l++ ++ lL +++
  CCG91628.1 267 GAMAAAVAHGIKNPLSSIRALAEVsLlQD--NLDESAKETLKEIIKETDTLNNRINHLLSYTK 327
                 7899*******************974488..8*************************998876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.9
                 HHHHHHC..T-HSSCHHHHHHHHHHHHHH.HHH CS
       HisKA  23 naeaLkregklteelkeyletiesearrl.dhl 54 
                  ++++ r    ++ +ke l  i+++++ + +++
  CCG91628.1 397 LIQIITR---SDPVQKEVLLEIVDHGKGIpNAI 426
                 5677777...67889998888888777554455 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.2e-06    0.0042       4      62 ..     378     439 ..     374     473 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.2e-06
  HATPase_c_3   4 ekAlaelvdNsldAdaen..vkievnknr.gktgeivieDdGkGmseeelknalrlatsske 62 
                  e++++el+ N++ A+ +   ++i    ++ +k+  + i D GkG++++ ++  +++  ++ +
   CCG91628.1 378 EQVIIELLTNAINASEKGglIQIITRSDPvQKEVLLEIVDHGKGIPNAIIDTIFQPFFTTST 439
                  899************9997788888887767778899***********99999997655544 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.2e-06     0.015      29     109 ..     374     453 ..     354     457 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.2e-06
  HATPase_c_2  29 ldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeepkeslkegGrGlalikglv 109
                    +i+ ++ E++tNa+++  +++   ++  r +  ++++ +e+ D+G+g + + ++   ++  ++s +  G+Gla+ k+++
   CCG91628.1 374 SSQIEQVIIELLTNAINASEKGGL-IQIITRSDPVQKEVLLEIVDHGKGIPNAIIDTIFQPFFTTSTEGTGLGLAIAKRYS 453
                  568999**************9866.4444444555566888********6555555555545579***********99886 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.0    0.0016       5.7       2      40 ..       1      46 [.       1      73 [. 0.67
   2 ?    9.4   4.1   0.00019       0.7      90     149 ..      84     143 ..      80     177 .. 0.80
   3 ?   -0.0   0.1      0.15   5.5e+02      70      95 ..     298     323 ..     276     328 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0016
   4HB_MCP_1  2 lkirkKLillflllallliivG.......vvGlyslkkinknletm 40
                +ki++K+ l+ +ll ++++ +G       +++l ++++i+  +e++
  CCG91628.1  1 MKISSKIKLAAFLLFIIIGTLGfemawvsALSLKNIRQIQLLSEKI 46
                89********999999999988777755567777777776555554 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00019
   4HB_MCP_1  90 eidkllekyektilteeEkelleefkeqlnaYrevrkkvlelakegkkdeAyqlyetegr 149
                  i+++l ++e++  ++eEk+ +e++keq+++ ++ +  +le a++    e  ++ ++e++
  CCG91628.1  84 LINEKLVSIESLFADKEEKTAFEAIKEQWKNLSSCSLGILEEATKLTSKEHLEAKKEEIE 143
                 589****************************99999999998888887776666666664 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.15
   4HB_MCP_1  70 ltkdkaekdellkdieeleaeidkll 95 
                  ++ k+  +e++k++++l+++i+ ll
  CCG91628.1 298 DESAKETLKEIIKETDTLNNRINHLL 323
                 34445556677777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3281.04
//
Query:       CCG91629.1  [L=464]
Description: DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-60  201.2   0.0    1.3e-59  200.7   0.0    1.2  1  Sigma54_activat  Sigma-54 interaction domain
    6.9e-22   77.7   0.0    1.8e-21   76.4   0.0    1.7  1  Response_reg     Response regulator receiver domain
    3.8e-18   65.9   0.0    9.6e-18   64.6   0.0    1.7  1  Sigma54_activ_2  Sigma-54 interaction domain
    2.3e-12   46.5   1.4    3.1e-12   46.1   0.1    1.9  2  HTH_8            Bacterial regulatory protein, Fis family
    1.1e-05   25.5   0.0    2.2e-05   24.5   0.0    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
    1.1e-05   24.9   0.0     0.0004   19.8   0.0    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00036   21.0   0.0     0.0011   19.3   0.0    1.9  2  AAA              ATPase family associated with various cellul
    0.00071   20.0   0.0     0.0018   18.7   0.0    1.8  1  AAA_16           AAA ATPase domain
     0.0084   16.2   0.0      0.016   15.3   0.0    1.4  1  Torsin           Torsin
  ------ inclusion threshold ------
       0.05   13.0   0.0        0.1   12.0   0.0    1.6  1  TniB             Bacterial TniB protein
      0.077   13.1   0.0       0.26   11.4   0.0    1.8  2  AAA_2            AAA domain (Cdc48 subfamily)
      0.082   12.6   0.0       0.14   11.9   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
        0.1   12.9   0.0        0.4   10.9   0.0    2.0  2  AAA_22           AAA domain
       0.12   11.9   0.0        0.2   11.1   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
       0.16   11.8   0.4       0.54   10.1   0.0    2.2  2  HTH_30           PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.7   0.0   1.1e-62   1.3e-59       1     167 [.     138     309 ..     138     310 .. 0.96

  Alignments for each domain:
  == domain 1  score: 200.7 bits;  conditional E-value: 1.1e-62
                      ----SHHHHHHHHHHHHHCTSS.....S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHH CS
  Sigma54_activat   1 ligesealkelleqikkvaktd.....lsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlf 89 
                      lig+s a+++++e+i+k+++ +      +vlitGe+GtGKe++ar++h++s+r++k f++vnc ++p++l+e eLFGhe+GaFtGA+++k Gl+
       CCG91629.1 138 LIGSSLAMTRVRETIQKLVALSldkspPTVLITGETGTGKEVVARLLHRKSSRSDKAFIHVNCISLPDNLVEDELFGHEQGAFTGARNAKPGLM 231
                      689999999****9999985543444489***************************************************************** PP

                      HHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEE CS
  Sigma54_activat  90 ekadgGtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnviei 167
                      e+ad GtlfLDeig++p++lQ kLl+++++++++r+Gs + +++d+ iiaatn++l+e+ + g+fr dL+yrlnv++i
       CCG91629.1 232 EAADRGTLFLDEIGDFPINLQGKLLTAIESKKIRRLGSVRDREIDLWIIAATNRNLTEKASLGSFRPDLLYRLNVVSI 309
                      ***************************************************************************988 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   1.5e-24   1.8e-21       1     110 [.       5     113 ..       5     115 .. 0.98

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.5e-24
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+v+D++ ++  l+++le++g  e++++ dg+  l ++ e+++ l+l+D+++pgm G+ellk+ ++ +p+l  i++ta ++ edavea+k+g +d+
    CCG91629.1   5 VLVVEDEKNLALSLKRFLENKGH-ETTVCFDGDIGLSQCLEMNPELLLVDCRLPGMGGIELLKKAKALNPNLYSIVFTAFGSIEDAVEAIKLGSFDY 100
                   89*********************.99*********************************************************************** PP

                   EESSG-HHHHHHH CS
  Response_reg  98 lsKpfdpeeLlka 110
                   ++Kp+d ++L + 
    CCG91629.1 101 IQKPIDLQRLGQL 113
                   ********99765 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   8.1e-21   9.6e-18       1     138 []     139     314 ..     139     314 .. 0.92

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 8.1e-21
                      X---HHHHHHHHHHHHHH.....T-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.......................HHHHH CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaa.....qsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.......................ldlle 66 
                      +g+s a+++ +e++++++     +s   v++tGe G+gke+vArlLh +s++ ++ f+  ++++lp                         l+e
       CCG91629.1 139 IGSSLAMTRVRETIQKLValsldKSPPTVLITGETGTGKEVVARLLHRKSSRSDKAFIHVNCISLPdnlvedelfgheqgaftgarnakPGLME 232
                      799************9986777678889**************************************8888888888888888888877767778 PP

                      HTTTSEEEEEE-TT--HHHHHHHHHHHHH..........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  67 qakggtLylkdiadlskaeqkeLlellak..........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                       a+ gtL+l +i d++ ++q +Ll ++++            + +l +++++ ++l++++  g+f   Ll++L  +++ +PpL
       CCG91629.1 233 AADRGTLFLDEIGDFPINLQGKLLTAIESkkirrlgsvrDREIDLWIIAATNRNLTEKASLGSFRPDLLYRLNVVSIYLPPL 314
                      89***************************9******99644899*************************************8 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       5.5   6.6e+03       5      11 ..     343     349 ..     343     350 .. 0.87
   2 !   46.1   0.1   2.6e-15   3.1e-12       2      41 ..     419     458 ..     418     458 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.5
                 HHHHHHH CS
       HTH_8   5 vEkelIe 11 
                 +Eke+Ie
  CCG91629.1 343 FEKEVIE 349
                 7*****8 PP

  == domain 2  score: 46.1 bits;  conditional E-value: 2.6e-15
                 HHHHHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHH CS
       HTH_8   2 leevEkelIeaALertgGnkskAArlLGisRrtLyrKLkk 41 
                 l+++E elI+ ALe+t+Gn s+AArlLG++R  L+++++k
  CCG91629.1 419 LKAFEGELIKTALEKTQGNFSQAARLLGVTRDWLRYRIEK 458
                 899**********************************997 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.8e-08   2.2e-05       2     123 ..     167     286 ..     166     303 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.8e-08
                 EEEE--SSSSHHHHHHHGGGGB......S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal......nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrl 94 
                 vl+ G++GtgK  +a+ l +           v+ + l++++ e++l+g+ + +  +++  +  l++aa +g +l+lDE+   + + +++Ll+ +e +++
  CCG91629.1 167 VLITGETGTGKEVVARLLHRKSsrsdkaFIHVNCISLPDNLVEDELFGHEQGAFTGARNAKPGLMEAADRG-TLFLDEIGDFPINLQGKLLTAIESKKI 264
                 89*****************999886543345778999**************88555555566688777776.689***********************9 PP

                 E..-SSSEEE---......-EEEEEESS- CS
       AAA_5  95 lleeggelvkaknddllerfrviatanpl 123
                 +   +g + + + d     + +ia++n++
  CCG91629.1 265 R--RLGSVRDREID-----LWIIAATNRN 286
                 9..55555555544.....7788888876 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.06        72      25      43 ..     167     185 ..     159     203 .. 0.89
   2 !   19.8   0.0   3.4e-07    0.0004      92     157 ..     221     284 ..     213     292 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.06
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +l++G  G+GK ++a+ l+
    CCG91629.1 167 VLITGETGTGKEVVARLLH 185
                   899************9886 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 3.4e-07
  Mg_chelatase  92 GggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamN 157
                    g +++kpG +  a +G LfLDE+ +f  +    L + +e+++++  r  +  +   ++ ++aa+N
    CCG91629.1 221 TGARNAKPGLMEAADRGTLFLDEIGDFPINLQGKLLTAIESKKIR--RLGSVRDREIDLWIIAATN 284
                   467899***********************************9875..5555555555555555555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   9.5e-07    0.0011       1     111 [.     167     285 ..     167     307 .. 0.79
   2 ?   -2.5   0.0       5.4   6.5e+03      45      76 ..     359     393 ..     344     398 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 9.5e-07
                 EEEESSTTSSHHHHHHHHHHHHT...HEEEEEETTTCSSS.STTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg...vefleisgsellsk.yvgesekkirelfkeakeka.......kpsilfiDEidalaksrsgseseeeervvnq 88 
                 vl++G  GtGK  +a+ + ++++     f+ +++ +l ++ +  e   + ++ f+ a++ +       +   lf+DEi  + + +          ++ +
  CCG91629.1 167 VLITGETGTGKEVVARLLHRKSSrsdKAFIHVNCISLPDNlVEDELFGHEQGAFTGARNAKpglmeaaDRGTLFLDEIGDF-PIN----------LQGK 254
                 799******************85444779999999999663445556777777777777667778886569*********9.455..........5999 PP

                 HHHHHHHTTTS........SSTEEEEEEESS CS
         AAA  89 Llteldgvkkk........eskvivigatnr 111
                 Llt+++  k +        e ++ +i+atnr
  CCG91629.1 255 LLTAIESKKIRrlgsvrdrEIDLWIIAATNR 285
                 9999999999999999988777999999999 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.4
                 HHHHHHHHHHHTS...TSEEEEEETGGGHHHHHTT CS
         AAA  45 kirelfkeakeka...kpsilfiDEidalaksrsg 76 
                 ++rel  ++++     +   + +  ida+ k+r +
  CCG91629.1 359 NVRELSHKIEQAVlwcEDNLISLRHIDAVLKKRFQ 393
                 55555555554446654567888889999988833 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.5e-06    0.0018      10      63 ..     150     203 ..     129     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.5e-06
      AAA_16  10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 e+++ ++    + +p+ vl++Ge G+GK  ++r l+r  ++++  f+  +c +l
  CCG91629.1 150 ETIQKLVALSLDKSPPTVLITGETGTGKEVVARLLHRKSSRSDKAFIHVNCISL 203
                 667777777889999**********************99999888888888776 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.4e-05     0.016      19      92 ..     130     199 ..     116     211 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.4e-05
                 HHHHHHHH--S-HHHHHHHHHHHHHHHT-SS-SS-EEEEEEE-TTSSHHHHHHHHHHHHSTTGGGSTTEEEEEH CS
      Torsin  19 LekdlekklfGqhlvkklvvksvkaylenekpkkpLvlsfhGwtGtGknfvaeiiaenlyrdGlrsdyvkkfva 92 
                  +k  e++l+G  l+   v ++++  ++    k p ++ + G tGtGk+ va+++      + +rsd    +v 
  CCG91629.1 130 YRKREETELIGSSLAMTRVRETIQKLVALSLDKSPPTVLITGETGTGKEVVARLLHR----KSSRSDKAFIHVN 199
                 55556789**********************999999999*************99854....4555554444444 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.7e-05       0.1      16      87 ..     145     213 ..     132     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.7e-05
        TniB  16 akeilerLeeLleypkrkrmpnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrly 87 
                 ++++ e++++L++    k +p +l+ G++ +GK ++++     h++++++d++ + v  +++p++  e++l+
  CCG91629.1 145 MTRVRETIQKLVALSLDKSPPTVLITGETGTGKEVVARLL---HRKSSRSDKAFIHVNCISLPDNLVEDELF 213
                 567788999999999999***************9998764...55556667888899999999988888887 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00022      0.26       6      77 ..     167     244 ..     163     248 .. 0.82
   2 ?   -2.2   0.0       3.2   3.9e+03     147     170 ..     283     306 ..     257     307 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00022
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---.......----THHHHHHHHHTTT-HHHHTTSEEEEETG CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle.......eeevehlvsrligappgyvgaeegGivllDEi 77 
                 +l++g+tg+Gk+ +a+ l +  + +++k++i +++ +l             +   +    a+pg  +a+++G ++lDEi
  CCG91629.1 167 VLITGETGTGKEVVARLLHRKSS-RSDKAFIHVNCISLPDnlvedelFGHEQGAFTGARNAKPGLMEAADRGTLFLDEI 244
                 7899*******************.9**********998876654333112344556666789999*************9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.2
                 GGG--HHHHHHTT--HHHHTT--E CS
       AAA_2 147 kkkeeveeelkkglipEllgRlpe 170
                 + ++ +e++    ++p+ll Rl++
  CCG91629.1 283 TNRNLTEKASLGSFRPDLLYRLNV 306
                 556677778888999999999986 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.14      32      92 ..     149     209 ..     124     261 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
   IstB_IS21  32 krkvkeLatlsfiekkenivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkr 92 
                 ++++++L++ls  ++   ++++G +G+GK  +a  l ++  r++++ ++v    L  +l  
  CCG91629.1 149 RETIQKLVALSLDKSPPTVLITGETGTGKEVVARLLHRKSSRSDKAFIHVNCISLPDNLVE 209
                 678999*****99999**************************9999988888777776655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00034       0.4       8      48 ..     167     201 ..     161     212 .. 0.81
   2 ?   -2.4   0.0       4.5   5.4e+03      63      63 ..     327     327 ..     284     379 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00034
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlp 48 
                 +++tGe+GtGK +++r l+++  +       ++ +++v++ 
  CCG91629.1 167 VLITGETGTGKEVVARLLHRKSSRS------DKAFIHVNCI 201
                 79****************9998654......6666677775 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.5
      AAA_22  63 a 63 
                  
  CCG91629.1 327 Y 327
                 1 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00017       0.2      32      69 ..     163     200 ..     139     205 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkldkekylsltinf 69 
                 +   vl++G+tGtGK v+++ l +k ++++  ++++n+
  CCG91629.1 163 SPPTVLITGETGTGKEVVARLLHRKSSRSDKAFIHVNC 200
                 344699*************9999988877777777775 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1         9   1.1e+04      29      45 ..     314     330 ..     314     334 .. 0.79
   2 ?   10.1   0.0   0.00045      0.54      10      35 ..     433     458 ..     425     459 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9
                 HHHHHHHHHHHHS--TT CS
      HTH_30  29 lryRLrrieellgldld 45 
                 lr R + i el ++ l+
  CCG91629.1 314 LRERREDIAELSNYFLR 330
                 67888999999988777 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00045
                 HTTT-HHHHHHHHTS-HHHHHHHHHH CS
      HTH_30  10 enggnisatAkaLhvHrnTlryRLrr 35 
                 +++gn s++A+ L+v r  lryR+++
  CCG91629.1 433 KTQGNFSQAARLLGVTRDWLRYRIEK 458
                 578*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 3016.82
//
Query:       CCG91630.1  [L=1135]
Description: Trehalose synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-74  249.9   0.6    1.9e-73  248.0   0.6    1.9  1  Alpha-amylase   Alpha amylase, catalytic domain
      2e-19   69.5   0.0    5.8e-19   68.0   0.0    1.9  1  Malt_amylase_C  Maltogenic Amylase, C-terminal domain
     0.0083   16.1   0.0      0.021   14.8   0.0    1.6  1  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.079   12.0   0.0       0.15   11.2   0.0    1.3  1  hDGE_amylase    Glycogen debranching enzyme, glucanotransfera


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.0   0.6   4.2e-77   1.9e-73       1     333 [.      49     402 ..      49     405 .. 0.87

  Alignments for each domain:
  == domain 1  score: 248.0 bits;  conditional E-value: 4.2e-77
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSG.G CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgep.k 95 
                    GD+ G+++kLdY+k++Gv+aiwl P++ sp +d gYdi+dy++++p +G+ +d+k  + +ah+++++vi+ lV+NHtsd+h wf++++++++ + +
     CCG91630.1  49 GDFIGMTQKLDYIKSIGVNAIWLLPFYPSPLKDDGYDISDYCAVHPDYGELKDFKIFLMEAHKRNLRVITELVINHTSDQHPWFQRARNSPAGSnY 144
                    9**************************************************************************************99976544* PP

                    GCCC-E......ESS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCCCCCCCCTTT-SEEEETTCCCTTTCCCC.HCCHCC CS
  Alpha-amylase  96 rdyyiwkegkeekeppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkdvvkfwlekgidGfRlDvvkhvskveal.esngef 190
                    r+yy+w ++ e+ ++     + f+ s+w++d  a+ yy h f++++pdLn +n+ev+ke+ +++ fwl  g+dG+RlD+v+++ +++++  +n + 
     CCG91630.1 145 RNYYVWSDNPEKFKEARIIFKDFESSNWTWDPVAKAYYWHRFYSHQPDLNFDNPEVKKEIFKIIDFWLGMGVDGLRLDAVPYLFERDGTsCENLPE 240
                    ******988554444444444899*************************************************************99886799*** PP

                    HHHHHHHHHHHTC.CGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTCEEES- CS
  Alpha-amylase 191 lheftqalnetva.srkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeeavtflg 285
                     h+f ++l  +v+ ++ ++m+++E ++  + d+++y  +   e +m ++fp +          ++   + + + ++l+     +++  ++ +tfl 
     CCG91630.1 241 THQFLKELRSYVDtHYANRMLLAEANQWPE-DAAAYFGQ-GDECHMAFHFPLMPRIF-----MAIRMEENYPIVDILE-LTPPIPD-CCQWATFLR 327
                    *************9999********99655.55555554.45777678887764322.....2333333455555553.4556676.777789999 PP

                    -TTS--HHHHTTSSTTTT............................HHHHHHHHHCCCTSSSEEEEETTCCCT--- CS
  Alpha-amylase 286 nHDqeRilsrlgddsaea............................ekklklaaillltlrGvpviYyGeEigmtg 333
                    nHD   +  ++ +++  +                             kk++l+ ++l++l G p+iYyG+Eigm +
     CCG91630.1 328 NHDELTLEMVTDEERD-YmyrvyakesraklnlgirrrlaplldnnRKKMELIFTILFSLMGSPIIYYGDEIGMGD 402
                    9999988888888774.4488999999999***************99***************************76 PP

>> Malt_amylase_C  Maltogenic Amylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   1.3e-22   5.8e-19       1      75 []     481     558 ..     481     558 .. 0.99

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 1.3e-22
                     -EEEE---S-TTEEEEEEEETTEEEEEEEE..SS-EEEEE--GGGTT-EEEETTTTEE-----SS.EEEEE-TT-EEE CS
  Malt_amylase_C   1 GsfefleadnrkvlaYlReyedetilvvaN..rsaqaveldlselagrvpvelfggeefpaigel.ytltLppygfyw 75 
                     Gs+e+++++n+kvla++R+y++e +lvv+N  r+ q +e++l++  g+ p+e fg++++p+i+e+ +++ L py ++w
      CCG91630.1 481 GSIEIIDQSNPKVLAFIRKYKEEILLVVINlsRFTQVTEISLPDCIGYIPTETFGKATLPKITENpLLFVLSPYAYFW 558
                     99**************************************************************************** PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.6e-06     0.021     121     194 ..     920     991 ..     865     997 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.6e-06
                 HTCCHHHHHHCHHHCCCGCCTCC...HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 121 qdlellrqlesatarllaselld...lleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                   l+l+rql + +++l++ e l    ++  +e+q+ + l a     + +  +HgD+h++ ll + +++ v  +iDfe
  CCG91630.1 920 YLLRLQRQLSKNNKDLKDKEILGfyeKIDVIEKQLQQILIAGNY--GLKIRIHGDFHLQQLLYT-GKDFV--IIDFE 991
                 33333344444433333322222344445555555555555555..78999*************.99999..****9 PP

>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.3e-05      0.15      19     112 ..      49     134 ..      46     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.3e-05
                   -SHHHHHHHHHHHHHTT--EEEES--EEE-TT--TTSEEEEEEE-TTT-.....SSC.HHHHHHHHHHHHHH--EEEEEE--SEEETT-CCCCC CS
  hDGE_amylase  19 GpleeWekvlkeikekgYnmiHftPlqelGesnSpYSiadqleldkelfeekdkeekeedveklvkklekeygllsltDvVlnHtannskwlee 112
                   G +   +++l+ ik+ g n i + P+      +  Y i+d   ++++         + +d++ ++ +++k  +l  +t +V nHt+++ +w + 
    CCG91630.1  49 GDFIGMTQKLDYIKSIGVNAIWLLPFYPSPLKDDGYDISDYCAVHPDYG-------ELKDFKIFLMEAHK-RNLRVITELVINHTSDQHPWFQR 134
                   666667789999**********************************994.......57899999988875.6899****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.46
# Mc/sec: 7408.46
//
Query:       CCG91631.1  [L=616]
Description: Malto-oligosyltrehalose trehalohydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-19   68.5   0.0    1.7e-13   50.9   0.0    3.1  2  Alpha-amylase  Alpha amylase, catalytic domain
    0.00018   21.8   0.0    0.00043   20.6   0.0    1.7  1  CBM_48         Carbohydrate-binding module 48 (Isoamylase N-t


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   1.8e-17   1.7e-13       1      94 [.     131     225 ..     131     237 .. 0.87
   2 !   11.7   0.0   1.6e-05      0.14     156     333 ..     250     444 ..     235     448 .. 0.51

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 1.8e-17
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE-S.-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCC...CHCCHHSTT CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifksp.qadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehew...fkeslkkkg 92 
                    G+++ ii +L+ lkeLG++a+ l Pi + p + + gYd     ++++ +G    l +L++ +h+ g+ v+lD+V NH + e ++   f ++++   
     CCG91631.1 131 GTFEAIIPRLPVLKELGINALELMPISQFPgKRNWGYDGVYPFAVQNSYGGPWGLRKLVDSCHQIGMAVVLDVVYNHLGPEGNYlsqFAPYFT--- 223
                    77889***********************7635789****9999***************************************99555444444... PP

                    SG CS
  Alpha-amylase  93 ep 94 
                    ++
     CCG91631.1 224 QK 225
                    33 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 1.6e-05
                    CCCCCCCCTTT.-SEEEETTCCCTTTCCCC.......HCCHCCHHHHHHHHHHHTC..CGTT-E....EEEE-TT-SCCCHCCCC-CGG..-SICE CS
  Alpha-amylase 156 kdvvkfwlekg.idGfRlDvvkhvskveal.......esngeflheftqalnetva..srkevm....tvgEvssdasedlrvyttear..lelem 235
                    ++++ fw+ +  id +RlD+++ +  ++a        ++  ef h+f+++    ++   ++  +    t+g ++  + +++     +       e+
     CCG91631.1 250 YNAL-FWFSEYdIDALRLDAIHAIYDESAYlfleelaDKTIEFCHTFNKTHFLIAEsdRNDPKFiypkTLGGCHL-HGQWCDDFHHALHafITKET 343
                    4444.5555444***********9996666899777756666666666554433334322222201112222222.11122211111110011111 PP

                    CCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS.-C..CCTTCEEES--TTS--HHHHTTSSTTTT...HHHHHHHHHCCCTSSSEEEEET CS
  Alpha-amylase 236 vldfphldvaqkakikeqlksisakklkellkkwlkal.ee..aaeeavtflgnHDqeRilsrlgddsaea...ekklklaaillltlrGvpviYy 325
                       + +++  ++++ k  ++ + ++ +++ ++k ++   ++  + ++  +f +nHDq  i++r+  ++ +      +lk++ +l+l++  +p  + 
     CCG91631.1 344 KGYYSDFGSLSHVA-KAFKQGYVIDGCYSSYRKRKHGRkPQhvKRSQLIVFSQNHDQ--IGNRYLGERLSClidFSELKMICVLTLLSGFIPLLFM 436
                    12222222222222.222222224444444444443330334345555677788988..6777666665556778888888888888888899999 PP

                    TCCCT--- CS
  Alpha-amylase 326 GeEigmtg 333
                    GeE g ++
     CCG91631.1 437 GEEYGEKN 444
                    99988776 PP

>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.7e-08   0.00043       6      72 ..      14      75 ..       9      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.7e-08
                EESSCEEEEEEEE-TTSSEEEEEECGTTTEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEET CS
      CBM_48  6 vsedekgvnfrvwapnAekVslvldfnnwdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgp 72
                 s+d   v f vw p   ++++++++++    +ip++ +++ g+W   l+   +++ +rYkyr+ + 
  CCG91631.1 14 CSDD--AVSFVVWGPFLSDCAIHIYEPED--LTIPME-KDSRGYWRGLLKTHEKKNRIRYKYRINKL 75
                4455..89******************998..9*****.6************999999******9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4087.98
//
Query:       CCG91632.1  [L=72]
Description: hypothetical protein MFUM_180001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       163  (0.00909142); expected 358.6 (0.02)
Passed bias filter:                      129  (0.00719505); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 548.64
//
Query:       CCG91633.1  [L=945]
Description: Maltooligosyl trehalose synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-22   78.8   2.4    1.5e-17   64.2   1.2    3.4  4  Alpha-amylase  Alpha amylase, catalytic domain


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   1.2   8.4e-22   1.5e-17      10     103 ..      28     122 ..      22     135 .. 0.84
   2 !   11.2   0.0   1.1e-05       0.2     115     176 ..     275     337 ..     258     371 .. 0.89
   3 ?   -2.7   0.0      0.19   3.4e+03     194     257 ..     475     534 ..     458     544 .. 0.72
   4 ?   -1.4   0.0     0.074   1.3e+03     312     329 ..     747     764 ..     730     767 .. 0.85

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 8.4e-22
                    CCCCCCCT-SCEEE-B-CE.-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGGCCC-E.. CS
  Alpha-amylase  10 LdYlkeLGvtaiwlsPifk.spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkrdyyiwke 103
                    +dYl +LG++ ++ sPi+k  p + hgYd+ dytki+   G+    ++++ k++ekg+  i D+V+NH+++++e        ++ p+++yy + +
     CCG91633.1  28 IDYLSQLGISDVYASPITKaKPGSSHGYDVVDYTKINSDLGDLHVYENIVLKLKEKGMGWIQDFVPNHMAYSKENTMLMDVFEHGPYSRYYEFFD 122
                    79*****************7799**********************************************99887643333223446777776554 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 1.1e-05
                    C-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCC CS
  Alpha-amylase 115 kslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkdvvkfwlekg.idGfRlDvvk 176
                    +++f+ s+w+   +  +y  +  +++l    +e+eev +e   ++ +++e+g i G+R+D ++
     CCG91633.1 275 EQYFRFSHWRVASEEINYRRFFTINDLISVRMEREEVFEEAHCLIYRLIEEGkITGLRIDHID 337
                    57999******999999999999********************7777777777*******876 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.19
                    HHHHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS CS
  Alpha-amylase 194 ftqalnetvasrkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksi 257
                    +++ + + + s++++m ++E  + a+e       e  +el+++l+f   +++++++++e+ +  
     CCG91633.1 475 YRTYISNGQMSKQDRMFLEEAVNIAKE----TLPELSVELDFILKFFLREIEHSFSEEEERERE 534
                    566666666688999999998887665....455566788888888888888888875555444 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.074
                    HCCCTSSSEEEEETTCCC CS
  Alpha-amylase 312 illltlrGvpviYyGeEi 329
                    +l + ++G+p  Y+G E+
     CCG91633.1 747 LLKIASPGIPDFYQGCEL 764
                    577899*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 6642.00
//
Query:       CCG91634.1  [L=95]
Description: hypothetical protein MFUM_180004 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 714.90
//
Query:       CCG91635.1  [L=64]
Description: hypothetical protein MFUM_180005 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 484.96
//
Query:       CCG91636.1  [L=547]
Description: Glucose-6-phosphate isomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.9e-232  770.8   0.0   5.5e-232  770.6   0.0    1.0  1  PGI       Phosphoglucose isomerase


Domain annotation for each model (and alignments):
>> PGI  Phosphoglucose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  770.6   0.0  3.1e-236  5.5e-232       1     486 []      49     539 ..      49     539 .. 1.00

  Alignments for each domain:
  == domain 1  score: 770.6 bits;  conditional E-value: 3.1e-236
                 E-TTSS--HHHHHHHHHHHHHTTHHHHHHHHHTT---BTTTTB---HHHHT-TT----EETTEESHHHHHHHHHHHHHHHHHHHTT-SB-TTS-B--EE CS
         PGI   1 dysknkvddeilealvklaeeaklkaarealfaGekinstenravlhvalrnrsnkpilvdGkdvvpevkevldkmkefsekvrsGewkGatgkaitdv 99 
                 dyskn++++e+l+ l++ + e +l   +e++f+G++in+tenr+vlhvalrnrs++pi+vdGkdv+ +vk+vl+kmk+f+e+vrs  wkG++gk i+d+
  CCG91636.1  49 DYSKNRITEETLSLLLQAVTEVDLPGYIEKMFSGKRINFTENRPVLHVALRNRSERPIYVDGKDVMVDVKRVLEKMKNFAEAVRSKRWKGYSGKPIKDI 147
                 9************************************************************************************************** PP

                 EEE--GGGTHHHHHHHHHTGGG-TT.-EEEEE--SSHHHHHHHHTT--GGGEEEEEE-SSS--HHHHHHHHHHHHHHHHHH--GGGGGGTEEEESS-HH CS
         PGI 100 vniGiGGsdlGPvlvtealkkeser.lkvafvsnvdgthiaevlkkldpettlfivasktfttaetllnaesakewllkalkedsavakhfvalstnae 197
                 vniGiGGsdlGP +vt+alk++ ++ l+v+fvsnvdgt+iaevlk ++ ++tlfi++sktftt+etl+na+++++ l+++ ++++a++kh+va+stn++
  CCG91636.1 148 VNIGIGGSDLGPRMVTHALKPYGHKeLNVHFVSNVDGTDIAEVLKAIELDSTLFIISSKTFTTKETLTNAHTVRKQLIDYFGDPKAIEKHVVAISTNEK 246
                 **********************98879************************************************************************ PP

                 HHHHHT--GGGEEE--TTS-GGG-TTSGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTS---EEEEEES-GGGTTHHH CS
         PGI 198 kveefGideknmfefwdwvGGryslwsaiGlsvalsiGfenfeelleGaaaidkhfleaplekniPvllalvgvwyvnflgaeteailpydqylerlaa 296
                  v++fGi ++nmfefwdwvGGryslwsaiGls++l+iG ++feell Ga  +d+hf+++plekniPv+++l+g wy nf+ga+t +i+pydqyle +++
  CCG91636.1 247 AVKDFGISPENMFEFWDWVGGRYSLWSAIGLSIVLYIGMDQFEELLYGAYLVDEHFRNSPLEKNIPVIMGLLGFWYGNFFGAQTYGIFPYDQYLELFPV 345
                 *************************************************************************************************** PP

                 HHHHHHHHHH---BBTTS-B-SS--S-EEE---TTTGGGTSHHHHHHSSS---EEEEEEEE-S-GGGGHHHHHHHHHHHHHHHHHHH-B-HHHHHHHHH CS
         PGI 297 ylqqldmesnGksvtkdgvlvdvetgeiifGeagtngqhafyqlihqGtkliPcdfiaavksqnieiadhhkillsnffaqtealmvGkseeevkkela 395
                 ylqqldmesnGk++ ++g++v + tg+i++G++ tngqh+f+ql+hqGt+liP+dfia+++++n  i++hh illsnffaqtealm Gk+e+e+k+e++
  CCG91636.1 346 YLQQLDMESNGKRIRRNGTVVTYPTGPILWGNPCTNGQHSFFQLLHQGTHLIPSDFIAPIQTHN-PIGNHHLILLSNFFAQTEALMKGKTEQEAKEEMQ 443
                 ****************************************************************.********************************** PP

                 HT.....HHHHHGGGG-B-----EEEEEEEE--HHHHHHHHHHHHHHHHHHHHHHTB-TT--GGGHHHHHHHHHHHHHHSSS----SS-HHHHHHH CS
         PGI 396 ka.....kveklvphktfeGnrPsnsillekltpaelGalialyehkilvqGviwginsfdqwGvelGkelakkilkeleasekvsdfdsstngli 486
                 ka     ++ekl+ph+tf GnrPsns l++k+tp++lG+lia+yehk++v+G++w+insfdqwGvelGk+la ++++el+a++   ++d+st+gli
  CCG91636.1 444 KAklnpeAIEKLLPHRTFPGNRPSNSFLIQKITPRTLGSLIAFYEHKVFVEGLLWDINSFDQWGVELGKQLATRVEEELTAGSLLYEHDASTKGLI 539
                 **9999999**************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3975.19
//
Query:       CCG91637.1  [L=227]
Description: DnaK suppressor protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-10   40.3   0.3    3.7e-10   39.6   0.3    1.4  1  zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
     0.0088   15.6   0.1      0.015   14.9   0.1    1.4  1  zf_C2H2_13    Zinc finger domain


Domain annotation for each model (and alignments):
>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.3   4.2e-14   3.7e-10       2      36 .]     154     188 ..     153     188 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 4.2e-14
  zf-dskA_traR   2 iygsCeeCGEpIpeaRlralPgarlCveCqekaer 36 
                   +yg+C  CG+pIp  Rl+a+P+ar+ ++Cq+ +e+
    CCG91637.1 154 TYGICQMCGKPIPIIRLQAIPYARFDIDCQRQFEK 188
                   8******************************9986 PP

>> zf_C2H2_13  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.6e-06     0.015      10      29 ..     146     167 ..     136     173 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.6e-06
  zf_C2H2_13  10 pLdtn..lnYRvCnkCGkPisl 29 
                 +L       Y +C+ CGkPi +
  CCG91637.1 146 SLKRIeeNTYGICQMCGKPIPI 167
                 555444467**********964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2469  (0.13771); expected 358.6 (0.02)
Passed bias filter:                      799  (0.0445647); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 1760.35
//
Query:       CCG91638.1  [L=83]
Description: Ribosomal protein S18 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-22   77.4   0.1    9.6e-22   77.0   0.1    1.2  1  Ribosomal_S18  Ribosomal protein S18
  ------ inclusion threshold ------
      0.045   13.9   0.2      0.065   13.4   0.2    1.2  1  YfhD           YfhD-like protein


Domain annotation for each model (and alignments):
>> Ribosomal_S18  Ribosomal protein S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.1   1.1e-25   9.6e-22       3      52 .]      33      82 ..      31      82 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 1.1e-25
  Ribosomal_S18  3 ekidYkdvelLsqFiterGkIlprriTGlcakhQrklakaIkrARhlaLL 52
                   e id+++velL++++te+G+IlprriTGl ak +r+l+++IkrAR++ L+
     CCG91638.1 33 EAIDFRNVELLKRYVTENGRILPRRITGLPAKLHRRLTREIKRARNVLLM 82
                   78********************************************9997 PP

>> YfhD  YfhD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   7.3e-06     0.065       1      32 [.       1      33 [.       1      34 [. 0.96

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.3e-06
        YfhD  1 MgRshkqknrdknKatlpQvPkke.ksDGiDvE 32
                MgR+ ++ +++k+K+++  +Pk   k+  iDvE
  CCG91638.1  1 MGRNSGNLKEKKRKKRVLATPKVVkKRVDIDVE 33
                9**999*****************989******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 625.55
//
Query:       CCG91639.1  [L=67]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 507.20
//
Query:       CCG91640.1  [L=299]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     3e-111  371.1   0.0   3.5e-111  370.9   0.0    1.0  1  Kdo_hydroxy  3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydrox


Domain annotation for each model (and alignments):
>> Kdo_hydroxy  3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.9   0.0  1.9e-115  3.5e-111       2     275 .]      24     296 ..      23     296 .. 0.99

  Alignments for each domain:
  == domain 1  score: 370.9 bits;  conditional E-value: 1.9e-115
  Kdo_hydroxy   2 eeeqeelieelEeGkvllfpklkfelseeekellspevedkkkknisykpeedklkGvaaeeedqealkallkryseqaesliarllpeYakklklar 99 
                  +e qe++ie++E+G+vl+fp+l+f+l  ee+++l+p++ ++  knisy+p++ +lkG+++++ed + l+ +lkry+++++++++ l+p Y ++l++ar
   CCG91640.1  24 KEIQEKAIESIENGSVLFFPRLNFSLLPEETKFLEPSWVSGA-KNISYDPRNSSLKGAEGKTEDLKLLSGMLKRYAQKTKEFLHLLFPFYGSSLRIAR 120
                  67899**********************************987.7****************************************************** PP

  Kdo_hydroxy 100 tsfRpvevegralslrkddtrLHvDafpsrptqGeriLRvFtNinPdgepRvWrvgepFeelarrflpkvkaalplsasllkrlgitkskrseYDhlm 197
                  tsfRpve++gr +s rkddtrLHvDafps+pt GeriLRvF+NinP+g+pR+Wr+gepF ++++++lp++++++p+++ ll  lgitk+ rs YDh+m
   CCG91640.1 121 TSFRPVEISGRPTSPRKDDTRLHVDAFPSSPTGGERILRVFSNINPSGKPRSWRIGEPFPQYLKHLLPQLESPTPGKRFLLYVLGITKGYRSLYDHYM 218
                  ************************************************************************************************** PP

  Kdo_hydroxy 198 lqlhdlmkadeeYQkdapqvtvefpagssWivftDqvsHavlsGqylleqTfylpvealkdpersplkvLerlagkal 275
                  l+lhd+ k d  YQk++pqv+++fpags+WivftDqv+Hav +Gq+lleqTf+++ ealk+pe+splk+Le +++k+l
   CCG91640.1 219 LELHDKGKLDLPYQKNSPQVAFDFPAGSTWIVFTDQVLHAVDKGQFLLEQTFHIKIEALKHPEKSPLKLLEAALNKKL 296
                  *************************************************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2444.40
//
Query:       CCG91641.1  [L=188]
Description: Integral membrane protein CcmA involved in cell shape determination [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-25   87.0   2.3    9.9e-25   86.7   2.3    1.1  1  Bactofilin  Polymer-forming cytoskeletal
  ------ inclusion threshold ------
      0.039   14.3   2.2      0.061   13.7   2.2    1.2  1  DUF5383     Family of unknown function (DUF5383)


Domain annotation for each model (and alignments):
>> Bactofilin  Polymer-forming cytoskeletal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   2.3   1.1e-28   9.9e-25       2      98 .]      82     179 ..      81     179 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 1.1e-28
  Bactofilin   2 ligegtkikGelevegdlridGkveGdi.eakgklvvgeggkvegnikaeevvvaGtvkGnveaeekvelkktakveGdikaksleieegavfeGkle 98 
                 +++ gtk++G++ ++++l+++G++eG+i +++g+l++ge+++v++++++++v ++G+++Gn++a++  el++ ++v Gd+k+++l++eeg  ++Gk+e
  CCG91641.1  82 VLATGTKFSGSIAFQNQLVVNGHFEGQIySNEGTLIIGEKAVVHAQVEVGNVLISGRFSGNIYASDLTELRNGSEVFGDVKTRRLKVEEGSILNGKCE 179
                 7899************************76699***************************************************************95 PP

>> DUF5383  Family of unknown function (DUF5383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.2   6.8e-06     0.061      16      63 ..      40      88 ..      37     104 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.8e-06
     DUF5383 16 eylreeaeyeeekeipeeqkdLtFtkkeke.eaeelkesLfassekesn 63
                ++l+e+++++e+++i e +k Lt ++++k+ ++++++e+Lf   ++ ++
  CCG91641.1 40 KSLQEKEKQKEQEKIIETKKTLTSNEPKKDfREAQVAEKLFNVLATGTK 88
                5799*******************999887747889******87766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1327  (0.0740142); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1468.14
//
Query:       CCG91642.1  [L=101]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-07   30.0   0.0    6.8e-07   29.8   0.0    1.0  1  Dabb      Stress responsive A/B Barrel Domain


Domain annotation for each model (and alignments):
>> Dabb  Stress responsive A/B Barrel Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   3.8e-11   6.8e-07       1      96 [.       2      95 ..       2      96 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 3.8e-11
                EEEEEEEEESSTTTHHHHHHH.HHHHHHHHHGSTTTSEEEEEEESSSSSTSTT-SEEEEEEESSHHHHHHHHTSHHHHHHH.HHHHHTEEEEEEEEEE CS
        Dabb  1 ikHivlfklkdevteeekaev.lealeaLkdkipgiksievgrnvspeklakgydvvliseFeseedlkaYlehpahvefv.elvkplvekrvvvDfe 96
                i+H+ +++ ++ ++ e+++++ +e    L  kip+i  + vg+n sp +   +y + + ++++s e l+  ++ p + +f  +++ pl + r+ +Dfe
  CCG91642.1  2 IHHLCFLSSQNVSNPEQIDNLmIETRVRL-LKIPEIMNLRVGKNISPNG---SYFFFFSFDVDSIEKLELVKQSPYYYQFEkQILAPLSAIRTEYDFE 95
                89999999999999999987754444444.7*****************9...*****************************99999**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 726.72
//
Query:       CCG91643.1  [L=108]
Description: hypothetical protein MFUM_180014 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 878.97
//
Query:       CCG91644.1  [L=106]
Description: hypothetical protein MFUM_180015 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.07   13.0   0.2      0.078   12.9   0.2    1.0  1  ALS2CR8   Amyotrophic lateral sclerosis 2 chromosomal region 


Domain annotation for each model (and alignments):
>> ALS2CR8  Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   4.3e-06     0.078      49     121 ..      18      91 ..       4     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.3e-06
     ALS2CR8  49 kkkkvlkeksrlskkrslskgtkKi....dcpAqidikkvlkfksekvvvsedtkarrkvvseklrkalannpssvk 121
                 k+++  k  ++l kk++ls +  K+    +++  + +++ lk++   v vse+ + r k+ s++l + l + +s v 
  CCG91644.1  18 KPRRIHK--HNLGKKKRLS-RLFKAeteiGRRVGLSLRQLLKLQRPSVIVSESLDFRGKALSKELSRRLLQMRSCVL 91 
                 3333333..3335555555.444443444899999********************************9999998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 824.97
//
Query:       CCG91645.1  [L=83]
Description: hypothetical protein MFUM_180016 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 623.44
//
Query:       CCG91646.1  [L=298]
Description: 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-29  100.6   0.9    1.8e-28   99.7   0.7    1.5  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
      3e-20   72.7   1.1    6.5e-20   71.6   1.1    1.6  1  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
    1.7e-07   30.8   0.4      3e-07   30.0   0.4    1.4  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    3.8e-07   30.6   0.2    7.8e-07   29.6   0.2    1.6  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    3.3e-06   27.9   0.1    7.1e-06   26.8   0.1    1.6  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    0.00024   21.2   0.2    0.00084   19.4   0.2    1.9  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
     0.0007   19.2   0.2      0.002   17.7   0.1    1.8  2  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
     0.0007   19.5   0.1     0.0019   18.1   0.1    1.8  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0017   18.6   0.1     0.0044   17.3   0.1    1.8  1  TrkA_N          TrkA-N domain
     0.0034   15.4   0.0     0.0045   15.0   0.0    1.1  1  Nup188          Nucleoporin subcomplex protein binding to Pom


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.7   9.8e-32   1.8e-28       1     156 [.       4     164 ..       4     165 .. 0.92
   2 ?   -3.5   0.0       5.8     1e+04      15      43 ..     247     276 ..     245     283 .. 0.69

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 9.8e-32
                    EEEEE--SHHHHHHHHHHHHTT-EEE.EE-SSHHHHHHHHHT.TEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS....HCCC--TT-EEEE-S CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykva.vynrtkekveelvae.gakaaesieelvasldvvitmvkagkavdevieg....llealkkgdilidgs 90 
                    +igf+G+G MG+nma++l + +y v+ vy+ +++ +ee+++e ga+a+++++ +++  dv++t+v++++a+ ++  +    l    +kg+i+i+++
     CCG91646.1   4 RIGFVGVGRMGANMARRLHDLKYPVTvVYDINQKVAEEVAKEiGAEATTKLARVTELSDVIFTVVSDDAAMYKIFAKngdsL-LIGAKGKIFINTA 98 
                    59**********************9735899999999999886699999999999999****************99977743.33389******** PP

                    ---HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEEEEEE CS
  NAD_binding_2  91 tsspedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigakvthv 156
                    t+sp++ +e+ k ++e g++ ++a    +  +A++GtL +m+GG+++++++v+p+l+++++++ ++
     CCG91646.1  99 TISPKTHIEVGKLCEEVGAEAIEACMASSIPQARSGTLYFMLGGKKQVVDEVEPILKDMSSSMRYC 164
                    ************************************************************988744 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.8
                    HHHH.HHTT-EEEEE-SSHHHHHHHHHTTE CS
  NAD_binding_2  15 alnl.lkagykvavynrtkekveelvaega 43 
                    alnl ++ g ++ + + t ++ ++lv++g+
     CCG91646.1 247 ALNLaKETGLNLPLAQATYNQYQRLVKKGF 276
                    666634667888888888888888888875 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   1.1   3.6e-23   6.5e-20       1     120 [.     168     286 ..     168     288 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 3.6e-23
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvlsrdfdpgFaldlmlKDlglalelareagaplpll 95 
                     G+++ vK++ n+++ in aa++E+l la+++ ld++ + ev ++  ++s++l++  +  + +r+    F++++ lKD g+al+la+e g++lpl+
      CCG91646.1 168 GSAAKVKALVNMVMNINTAALAEGLGLAKALNLDLNMIREVFSQTGANSRVLQTDGE-DMQNREHSCFFSAEHALKDSGIALNLAKETGLNLPLA 261
                     8999****************************************************8.69*********************************** PP

  NAD_binding_11  96 alaeqlyaaaaaegggdaDhsaivr 120
                     +++ + y+++ ++g g+ D+sai +
      CCG91646.1 262 QATYNQYQRLVKKGFGQYDKSAISE 286
                     *********************9976 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.4   1.7e-10     3e-07      37     127 ..       3      98 ..       1     101 [. 0.86

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.7e-10
                   SEEEEES-SHHHHHHHHHHHHTT-EE.EEESSSHHHHH.CHHHHTCEEC.SHHHHHHH-SEEEE-S--STTTTTSBSH..HHHHCSTTTEEEEESS CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgmkv.iaydrskkkee.eeeelgvelv.sleellaesDivslhlpltpetrhlina..eelakmkkgailiNta 127
                   k++G +G+Gr+G ++a+rl+ ++  v ++yd ++k  e  ++e g+e + +l  + + sD+++ ++   ++ ++++ +  ++l    kg i+iNta
    CCG91646.1   3 KRIGFVGVGRMGANMARRLHDLKYPVtVVYDINQKVAEeVAKEIGAEATtKLARVTELSDVIFTVVSDDAAMYKIFAKngDSLLIGAKGKIFINTA 98 
                   89**********************872568888887666788889966559************************966226777889999****98 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.2   4.3e-10   7.8e-07       1      69 [.       4      68 ..       4      98 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 4.3e-10
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlav 69
                   +ig++G G+mg+ +a++l       + ++v+ + n++ aee a+e+g+++t+ + + + e +dv++  v
     CCG91646.1  4 RIGFVGVGRMGANMARRLHDLK---YPVTVVYDINQKVAEEVAKEIGAEATT-KLARVTELSDVIFTVV 68
                   79*******************9...999999*********************.************9877 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1     4e-09   7.1e-06       2      67 ..       4      65 ..       3      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 4e-09
                  EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEE CS
  GFO_IDH_MocA  2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavi 67
                  r++++G+G++g + +r l++   ++ v+ ++d++++ ae+va++ g+ea ++l+++ +    d+++
    CCG91646.1  4 RIGFVGVGRMGANMARRLHDL--KYPVTVVYDINQKVAEEVAKEIGAEATTKLARVTEL--SDVIF 65
                  89*************999999..999**************************9999984..45554 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.2   4.7e-07   0.00084      12      85 ..       2      70 ..       1      80 [. 0.86
   2 ?   -2.6   0.0         3   5.3e+03      42      69 ..     101     128 ..      95     131 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.7e-07
                  T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSS CS
  Shikimate_DH 12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisatas 85
                  +k++  +G G+m+  +a+ L++ ++   vv   +++ a+e+a+e+++e     + ++l ++ + +dv+++ ++ 
    CCG91646.1  2 SKRIGFVGVGRMGANMARRLHDLKYPVTVVYDINQKVAEEVAKEIGAE-----ATTKLARVTELSDVIFTVVSD 70
                  58999*********************8888899999999999999766.....677888888999999998765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3
                   EESSHHHHHHHHHHHT.ET-EEEEGCGH CS
  Shikimate_DH  42 aNRtlerakelaeelkgeeiealkleel 69 
                      t+  + +l+ee+++e iea+  +++
    CCG91646.1 101 SPKTHIEVGKLCEEVGAEAIEACMASSI 128
                   5556667778999998888888776665 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   1.1e-06     0.002       4      79 ..       2      80 ..       1     108 [. 0.82
   2 ?   -2.2   0.0       1.5   2.7e+03      23      38 ..     241     256 ..     237     281 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.1e-06
                TS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-H.HHHHHHHTT-EEE.EHHHHHHT-SEEEE-S-HHH.HHHHHHH CS
        IlvN  4 gkkiaviGyGsqGhaqalnlrdsgldvvvglregsk.svkkAkeegfevl.tvaeavkkadvvmiliPDel.qkevyee 79
                +k+i  +G G  G + a+ l+d +  v+v    ++k   + Ake g e + ++a +++ +dv+++++ D + + +++ +
  CCG91646.1  2 SKRIGFVGVGRMGANMARRLHDLKYPVTVVYDINQKvAEEVAKEIGAEATtKLARVTELSDVIFTVVSDDAaMYKIFAK 80
                699*********************9999988877764778899999987516899999******999876415566654 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
                 HHHTT--EEEEE-TT- CS
        IlvN  23 lrdsgldvvvglregs 38 
                 l+dsg+ + ++ ++g 
  CCG91646.1 241 LKDSGIALNLAKETGL 256
                 6777776666655543 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1     1e-06    0.0019       2      48 ..       5      52 ..       4      77 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1e-06
                EEEE--SCCHHHHHHHHHHTT-EEEE.E-S-HHHHHHHHHHHHHHHHC CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvl.vdiseealekalekiekslek 48
                ++ +G G mGa +a  +   +++V++ +di+++ +e+++++i ++   
  CCG91646.1  5 IGFVGVGRMGANMARRLHDLKYPVTVvYDINQKVAEEVAKEIGAEATT 52
                789*********************85279***********99984333 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   2.4e-06    0.0044       4      40 ..       8      45 ..       5      73 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.4e-06
                ES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHT CS
      TrkA_N  4 iGlGrvGrslaeeLse.ggkdvvvidkdeerveelree 40
                +G+Gr+G ++a++L++ +++  vv d +++++ee+++e
  CCG91646.1  8 VGVGRMGANMARRLHDlKYPVTVVYDINQKVAEEVAKE 45
                8***************99975666699******99876 PP

>> Nup188  Nucleoporin subcomplex protein binding to Pom34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.5e-06    0.0045      37     144 ..     176     286 ..     147     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.5e-06
      Nup188  37 lrgilyniteknvedaeklsklLdldakeslrvisqtlkrekrklkddlekvlenerlsl.lasyilrERrsvLkvvlel.ln..ylsstlhplskeia 131
                 l+++  ni+    +  + l+k+L+ld++ + +v+sqt +++ r l++d e++ ++e +    a+  l++  + L++++e  ln   ++ t+ ++++ ++
  CCG91646.1 176 LVNMVMNINTAALAEGLGLAKALNLDLNMIREVFSQTGANS-RVLQTDGEDMQNREHSCFfSAEHALKDSGIALNLAKETgLNlpLAQATYNQYQRLVK 273
                 555566999999999*************************7.999*****9999999988688999***********9974557888999999999888 PP

      Nup188 132 efveklsskyisk 144
                 + + + ++++is+
  CCG91646.1 274 KGFGQYDKSAISE 286
                 8877777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2064.51
//
Query:       CCG91647.1  [L=461]
Description: Pyruvate/2-oxoglutarate dehydrogenase complex,dihydrolipoamide dehydrogenase (E3) component or related enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-61  206.0   0.1    8.5e-61  205.7   0.1    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    7.1e-34  116.4   0.1    1.2e-33  115.7   0.1    1.4  1  Pyr_redox_dim   Pyridine nucleotide-disulphide oxidoreductase
    2.3e-23   82.6   2.2    8.4e-19   67.9   0.1    2.6  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      2e-15   56.9   0.4    4.6e-15   55.7   0.4    1.8  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    1.2e-09   38.1   0.1    8.5e-08   32.0   0.0    2.2  2  FAD_oxidored    FAD dependent oxidoreductase
    4.4e-09   35.9   1.5    4.3e-06   26.1   0.3    3.0  3  GIDA            Glucose inhibited division protein A
    2.6e-08   33.4   5.2    5.4e-07   29.0   1.3    3.1  3  FAD_binding_2   FAD binding domain
    5.6e-08   32.9   2.3    0.00015   21.9   0.4    2.4  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    4.5e-07   29.8   7.4     0.0051   16.5   1.6    3.4  4  DAO             FAD dependent oxidoreductase
      7e-07   28.3  12.3    2.3e-05   23.3   0.8    3.5  4  HI0933_like     HI0933-like protein
    7.4e-06   25.4   0.5      0.059   12.7   0.1    2.6  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    0.00011   21.6   2.2      0.015   14.6   0.5    2.3  2  FAD_binding_3   FAD binding domain
    0.00088   18.4   0.0     0.0096   15.0   0.0    2.2  2  Lycopene_cycl   Lycopene cyclase protein
      0.001   18.3   0.0      0.009   15.2   0.0    2.1  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
     0.0024   18.3   0.2        3.1    8.3   0.0    2.5  2  NAD_binding_7   Putative NAD(P)-binding
     0.0039   16.1   1.7     0.0058   15.5   0.1    1.9  2  Trp_halogenase  Tryptophan halogenase
     0.0042   17.0   0.9     0.0079   16.1   0.0    1.9  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.009   15.4   0.1       0.27   10.6   0.0    2.3  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
  ------ inclusion threshold ------
       0.01   15.1   1.0       0.12   11.6   0.2    2.3  2  Thi4            Thi4 family
       0.18   12.1   0.5        8.1    6.7   0.1    2.6  2  TrkA_N          TrkA-N domain
       0.22   11.4   1.0        4.9    7.1   0.0    2.9  2  LpxI_N          LpxI N-terminal domain
       0.38   10.1   1.6        5.6    6.3   0.3    2.6  2  Spermine_synth  Spermine/spermidine synthase domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.7   0.1     1e-63   8.5e-61       2     294 .]       5     323 ..       4     323 .. 0.93

  Alignments for each domain:
  == domain 1  score: 205.7 bits;  conditional E-value: 1e-63
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH........................HHHHCHHHHCCCCHC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias........................evvkklnqgielllg 72 
                  d+++iGgGpAG+ aal+++q g kv++ve   l+g c n+gc++sk+ll++ae+ e ++                        +  +++++g+e+l +
   CCG91647.1   5 DLIIIGGGPAGYVAALRASQLGKKVAVVEadkLGGVCSNWGCIPSKTLLKTAEFIERCKkadafgleisglkfdyskviarsrQSANRMSSGVEYLFK 102
                  789*************************9999************************999************************88899********** PP

                  CTCEEEEESCEEEEETEEEC.....TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  73 eevvkidpgkkkvklekkke.....gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklg 165
                  + +++ +++k+k+   kk +     g++e++ + +++l tG+++++l+   v    gkl  +++s eal+   lpk+i++vGgG+iGvE+A +++ +g
   CCG91647.1 103 SRGIQWIKAKGKINKDKKIRmtfpdGKTEELSAPYILLSTGCKAKTLPFIKV---DGKL--IFTSREALETTRLPKKILIVGGGAIGVEFAYFYKCMG 195
                  99****999999999777779**************************77766...4556..899********************************** PP

                  -EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE..EEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Pyr_redox_2 166 kevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgnge..klevvledgeeidadlvvvavGvrpstelle.eklglelderggivv 260
                  +ev +ve ++++l+++d+e+s+al++ + k+G+++++ t+v++  + +e  +++++   +e+i+ + +++a+Gv++  e +   +  l++ ++g+i v
   CCG91647.1 196 SEVIIVEMASEILPGTDSEISKALQKSFSKKGITIYCSTVVEKCWNIKEkiHVRLKGAVNETIESEAMLLAIGVSAHLEDVLePDFELQT-QNGFIAV 292
                  ******************************************99888884455588888888***************9988556666666.******* PP

                  -TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 261 deflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  de+++t+v+gi+a+GD++   g p la+aA ++G
   CCG91647.1 293 DEKYQTSVDGIFAAGDII---GPPLLAHAAFREG 323
                  ******************...9999*****9998 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.1   1.5e-36   1.2e-33       1     108 [.     342     449 ..     342     451 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 1.5e-36
                    BEEEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTSB CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladti 96 
                    +p++v+++p+va+vG+teee+k+a i++kv+k p++ang+a+a++e +gfvKl++   +g++lGahi+G++a+eli e+++a + + t+e+l   i
     CCG91647.1 342 VPSCVYCQPQVATVGMTEEEVKKASIPYKVAKYPYSANGKAVASGEIEGFVKLLISDPEGEILGAHIIGEDASELIGEFSLAKTLESTAEELFLAI 437
                    79********************************************************************************************** PP

                    SSSSSTGGGGHC CS
  Pyr_redox_dim  97 hihPtlsealke 108
                    h+hPtlse++ e
     CCG91647.1 438 HPHPTLSEMVGE 449
                    ********9876 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   7.6e-05     0.062       2      30 ..       6      34 ..       5      38 .. 0.93
   2 !   67.9   0.1     1e-21   8.4e-19       1      71 [.     174     244 ..     174     256 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.6e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEES CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvver 30
                ++++GgG  g  +A  +++lgkkV vve+
  CCG91647.1  6 LIIIGGGPAGYVAALRASQLGKKVAVVEA 34
                68*************************97 PP

  == domain 2  score: 67.9 bits;  conditional E-value: 1e-21
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETT CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsed 71 
                 k+++vGgG ig+E+A +++ +g++V +ve+++++l++ D e+sk+lq++++k+gi+++ +t+ve+    ++
  CCG91647.1 174 KILIVGGGAIGVEFAYFYKCMGSEVIIVEMASEILPGTDSEISKALQKSFSKKGITIYCSTVVEKCWNIKE 244
                 79*************************************************************99765555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.4   5.6e-18   4.6e-15       1     305 []       7     307 ..       7     307 .. 0.74

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 5.6e-18
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgnignsiyry...p.....kemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrev 90 
                  iIiG+GPaG  aa+ + ++g  ++ ++E +++g   +++   p     k+  fi  +++ + +++  +  +  + s    + + + s++ + + ++ +
   CCG91647.1   7 IIIGGGPAGYVAALRASQLGK-KVAVVEADKLGGVCSNWgciPsktllKTAEFIERCKKADAFGLE-ISGLKFDYSKV--IARSRQSANRMSSGVEYL 100
                  8*******************9.7****************554222222445566666666666653.44444455543..445555666666666666 PP

  Pyr_redox_3  91 aksfelp.iklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkg 187
                   ks  ++ ik++ ++++ kk + +f  + ++e+++A++++++tG  +   ++ i+   kl   +++  e +    +k++++Gg+  +v+ A+    +g
   CCG91647.1 101 FKSRGIQwIKAKGKINKDKKIRMTFP-DGKTEELSAPYILLSTGC-KAKTLPFIKVDGKLIFTSREALETT-RLPKKILIVGGGAIGVEFAYFYKCMG 195
                  77777755888888888888777776.78889************9.6666666677665555555555553.33799********************* PP

  Pyr_redox_3 188 aeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedg.kkvevkddvvlatGykpdlsflkkslfelded 284
                  +eV +v   sei       + +++    + l++  +++ i+++  + v++  + +e+++v+ + + +++ +++ ++la+G + +l+ + ++ fel+++
   CCG91647.1 196 SEVIIVEMASEILPGT---DSEIS----KALQKSFSKKGITIYCSTVVEKCWNIKEKIHVRLKGAvNETIESEAMLLAIGVSAHLEDVLEPDFELQTQ 286
                  *********9888863...33344....44444444456***********9999999999966541445557888899*******9988888888766 PP

  Pyr_redox_3 285 grpvlteeteetnvpglflaG 305
                  +     +e+ +t v+g+f aG
   CCG91647.1 287 NGFIAVDEKYQTSVDGIFAAG 307
                  5555555667889******99 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0     1e-10   8.5e-08       1      42 [.       5      45 ..       5     137 .. 0.90
   2 ?    4.3   0.0     0.026        21       2      30 ..     175     203 ..     174     213 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1e-10
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsgl 42
                  D++++GGgpaG++AA+ A + G+kv++ve +  lGG  ++ +
    CCG91647.1  5 DLIIIGGGPAGYVAALRASQLGKKVAVVEAD-KLGGVCSNWG 45
                  99**************************986.6999988755 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.026
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLvee 30 
                   +++vGGg+ Gv  A+  + +G +v++ve 
    CCG91647.1 175 ILIVGGGAIGVEFAYFYKCMGSEVIIVEM 203
                   89*************************95 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.3   5.3e-09   4.3e-06       1      47 [.       5      53 ..       5      75 .. 0.82
   2 !    6.7   0.0     0.004       3.3       1      30 [.     174     203 ..     174     238 .. 0.88
   3 ?    0.1   0.0      0.41   3.3e+02     350     366 ..     296     311 ..     290     320 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 5.3e-09
                CEEEE-SSHHHHHHHHHHHHTT--EEEE..ES-GGGTT--SSSSEEE-T CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi..thkldtiaelsCnpsiggi 47
                d+i+iGgG AG+ AAl a++lG kv+ +   +  + + + +C ps   +
  CCG91647.1  5 DLIIIGGGPAGYVAALRASQLGKKVAVVeaDKLGGVCSNWGCIPSKTLL 53
                689*************************844445567789999998766 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.004
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLith 30 
                 ++ ++GgG  G+e A+  + +G +v+++ +
  CCG91647.1 174 KILIVGGGAIGVEFAYFYKCMGSEVIIVEM 203
                 589**********************99944 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.41
                 SBBSSSBTEEE-CGGGT CS
        GIDA 350 LetkkvkgLflAGqinG 366
                  +t+ v+g+f+AG+i G
  CCG91647.1 296 YQTS-VDGIFAAGDIIG 311
                 5665.99********99 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   1.3   6.6e-10   5.4e-07       1      40 [.       5      44 ..       5      45 .. 0.89
   2 ?    3.7   0.1     0.032        26       2      32 ..     175     205 ..     174     238 .. 0.94
   3 ?    0.2   0.0      0.37     3e+02     376     402 ..     290     310 ..     283     315 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 6.6e-10
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggataw 40
                   D+i+iG+G AG++AAl+a++ G+kvavve  +  g  + w
     CCG91647.1  5 DLIIIGGGPAGYVAALRASQLGKKVAVVEADKLGGVCSNW 44
                   89***************************98875556655 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.032
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSS CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeq 32 
                    ++++G+G+ G   A+  +  G +v++ve ++
     CCG91647.1 175 ILIVGGGAIGVEFAYFYKCMGSEVIIVEMAS 205
                    79*************************9765 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.37
                    EEBETTSBESTTEEESSBTEEE-STCE CS
  FAD_binding_2 376 vetdengrvldadgqpipGLYAaGeva 402
                    +++de+ ++       ++G +AaG  +
     CCG91647.1 290 IAVDEKYQT------SVDGIFAAGDII 310
                    567888888......*********876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.4   1.8e-07   0.00015       1      37 [.       8      43 ..       8      49 .. 0.94
   2 !   10.3   0.1    0.0008      0.65       1      30 [.     177     206 ..     177     216 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.8e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-E CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraas 37
                   I+G+G +G vaA ++++ g++v ++e+ d+lGG ++ 
     CCG91647.1  8 IIGGGPAGYVAALRASQLGKKVAVVEA-DKLGGVCSN 43
                   9************************98.799999975 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0008
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdr 30 
                    IvG+G+ G  +Ay+++  g +v ++e+++ 
     CCG91647.1 177 IVGGGAIGVEFAYFYKCMGSEVIIVEMASE 206
                    9*************************9987 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.6   6.2e-06    0.0051       1      35 [.       5      40 ..       5      48 .. 0.88
   2 ?   -2.0   0.0       2.5     2e+03     175     224 ..     117     158 ..      72     170 .. 0.56
   3 !   12.6   0.2   9.3e-05     0.076       1      44 [.     174     219 ..     174     227 .. 0.82
   4 ?    3.0   0.0     0.077        63     150     205 ..     217     272 ..     212     297 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.2e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsg 35
                d++iiGGG +G  +A+ +++ g  V+++e++  +g  
  CCG91647.1  5 DLIIIGGGPAGYVAALRASQLGkkVAVVEAD-KLGGV 40
                789*****************999*******9.66634 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.5
                 EETCEEEEE.....EECTEEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEE CS
         DAO 175 edgkvwgve.....rttpgendaadavVnaaGawsdllgllkeldlpispvrgqv 224
                 +d+k+   +      +t++   +a ++ +++G+ ++      +l  p+  v g  
  CCG91647.1 117 KDKKI---RmtfpdGKTEEL--SAPYILLSTGCKAK------TL--PFIKVDGKL 158
                 22332...232354323222..45889999999964......44..555555554 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 9.3e-05
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgll 44 
                 +++i+GGG iG+  Ay+    g  V+++e+++++  g+ +  s+ l
  CCG91647.1 174 KILIVGGGAIGVEFAYFYKCMGseVIIVEMASEILPGTDSEISKAL 219
                 59****************555889*******887778877666665 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.077
                 HHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.....EECTEEEEEEEEEEE--GGGHH CS
         DAO 150 aalaraaealGveilegtevtgleeedgkvwgve.....rttpgendaadavVnaaGawsd 205
                 +al++ + ++G++i+  t v++  +  +k  +v+     +   +++++ +a  +a G+ + 
  CCG91647.1 217 KALQKSFSKKGITIYCSTVVEKCWNIKEK-IHVRlkgavN---ETIES-EAMLLAIGVSAH 272
                 799**************999997442222.3443443212...22234.789999998764 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.8   2.8e-08   2.3e-05       2      33 ..       5      36 ..       4      39 .. 0.92
   2 ?   -2.8   0.0       2.3   1.9e+03     136     165 ..     114     145 ..      82     147 .. 0.67
   3 ?    4.6   0.4     0.013        11       2      35 ..     174     207 ..     173     210 .. 0.92
   4 !    6.9   0.2    0.0027       2.2     109     164 ..     213     269 ..     209     272 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.8e-08
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 d+i+iGgG+AG  aA++a++ gk+V+++e+ k
   CCG91647.1  5 DLIIIGGGPAGYVAALRASQLGKKVAVVEADK 36
                 78**************************9875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.3
                  ECETTE.EEEEE...TTEEEEESEEEE----S CS
  HI0933_like 136 ekeedgkfrvkt..kseeeleadklvlAtGGl 165
                  + ++d+k+r++    ++eel+a +++l+tG +
   CCG91647.1 114 KINKDKKIRMTFpdGKTEELSAPYILLSTGCK 145
                  33445555555542477888999999998876 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.013
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakkl 35 
                  +++++GgGa G+  A   +  g++V+++e a+++
   CCG91647.1 174 KILIVGGGAIGVEFAYFYKCMGSEVIIVEMASEI 207
                  799**************************98775 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0027
                  HHHHHHHHHHHHHHT-EEE-S--EEEEECETTE..EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 109 edivdallkelkeagvklrletevksvekeedg.kfrvktkseeeleadklvlAtGG 164
                  ++i +al+k  +++g++++ +t v++  + +++ ++r+k   +e++e+++++lA+G 
   CCG91647.1 213 SEISKALQKSFSKKGITIYCSTVVEKCWNIKEKiHVRLKGAVNETIESEAMLLAIGV 269
                  57999*******************9975544440455555789***********995 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   7.3e-05     0.059      31      60 ..       6      35 ..       2      61 .. 0.94
   2 !   10.2   0.1    0.0004      0.32      28      69 ..     172     213 ..     161     245 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.3e-05
                 EEEESTSHHHHHHHHHHHHTT-EEEEEESS CS
  AlaDh_PNT_C 31 vlviGgGvaGlqAiatakglgakVtvlDvr 60
                  ++iGgG aG  A+  a++lg kV v++ +
   CCG91647.1  6 LIIIGGGPAGYVAALRASQLGKKVAVVEAD 35
                 58***********************99865 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0004
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles 69 
                  p k+l++GgG  G++ +   k +g +V ++++ ++ l   +s
   CCG91647.1 172 PKKILIVGGGAIGVEFAYFYKCMGSEVIIVEMASEILPGTDS 213
                  679****************************99887766666 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.5   1.8e-05     0.015       3      32 ..       5      34 ..       3      38 .. 0.92
   2 !    6.3   0.1    0.0059       4.8       3      35 ..     174     206 ..     173     220 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-05
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   d +I+G+GpaG ++al  s+ G +v +ve 
     CCG91647.1  5 DLIIIGGGPAGYVAALRASQLGKKVAVVEA 34
                   679*************************97 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0059
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrst 35 
                    ++lIVG+G  G+  a + +  G +v++ve  s+
     CCG91647.1 174 KILIVGGGAIGVEFAYFYKCMGSEVIIVEMASE 206
                    589*************************98776 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.2e-05    0.0096       1      34 [.       5      36 ..       5     154 .. 0.85
   2 ?    1.5   0.0      0.15   1.3e+02       2      37 ..     175     208 ..     174     286 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasp 34
                   D+++iG+GpAg   A r   ++ g kv ++ea +
     CCG91647.1  5 DLIIIGGGPAGYVAALRA--SQLGKKVAVVEADK 36
                   9*****************..9*********9854 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.15
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsll 37 
                    ++++G+G+ g+  A     + +g +v+++e + ++l
     CCG91647.1 175 ILIVGGGAIGVEFAYFY--KCMGSEVIIVEMASEIL 208
                    789***********999..99999999999777664 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.31   2.5e+02       2      25 ..       3      26 ..       2      37 .. 0.71
   2 !   15.2   0.0   1.1e-05     0.009     107     212 ..      91     193 ..      86     260 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.31
  K_oxygenase  2 ilDligiGiGpsnLsLailleevk 25
                 +lDli+iG Gp+    a+++++  
   CCG91647.1  3 TLDLIIIGGGPAGYVAALRASQLG 26
                 68*********9776666666555 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.1e-05
  K_oxygenase 107 sqleeqvrfgeeveevepdeeeee..elltveskdaegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqS 202
                  +++++ v++  + + +++ +++++  +  +++++ ++g++eel+a  ++l++G+++k  ++++ ++g + ++ s e+le++   + +k+i++vG+G  
   CCG91647.1  91 NRMSSGVEYLFKSRGIQWIKAKGKinKDKKIRMTFPDGKTEELSAPYILLSTGCKAKTLPFIK-VDG-KLIFTSREALETT---RLPKKILIVGGGAI 183
                  556666666666666666666555544456666569*****************8887766777.553.8999999999998...7899********99 PP

  K_oxygenase 203 aaeifedllr 212
                  + e ++    
   CCG91647.1 184 GVEFAYFYKC 193
                  9997665443 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0055       4.5       9      40 ..       5      36 ..       1     107 [. 0.74
   2 !    8.3   0.0    0.0038       3.1       8      45 ..     173     209 ..     169     275 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0055
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapev 40
                     +++GgG+ ++  + +  + g+kv vv  + 
     CCG91647.1  5 DLIIIGGGPAGYVAALRASQLGKKVAVVEADK 36
                   678************************98875 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0038
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleagakvtvvapevkeele 45 
                    kk+l+vGgG ++ + ++     g +v++v  + +e+l+
     CCG91647.1 173 KKILIVGGGAIGVEFAYFYKCMGSEVIIVEMA-SEILP 209
                    89************999999999999997666.22333 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   7.2e-06    0.0058       2      39 ..       6      40 ..       5      58 .. 0.85
   2 ?   -0.7   0.1      0.58   4.7e+02       1      22 [.     174     195 ..     174     209 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.2e-06
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS--- CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlveseeigtv 39
                    ++i+GGG+aG++aA   ++ +    +v +ve++++g v
      CCG91647.1  6 LIIIGGGPAGYVAALRASQLG---KKVAVVEADKLGGV 40
                    79************9999988...56*******99976 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.58
                     EEEEE--SHHHHHHHHHHHHHT CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalakal 22 
                     ki+ivGGG  G   A   + ++
      CCG91647.1 174 KILIVGGGAIGVEFAYFYKCMG 195
                     79*******9987776665555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2         4   3.2e+03       4      31 ..       8      35 ..       6      37 .. 0.84
   2 !   16.1   0.0   9.7e-06    0.0079       2      56 ..     175     229 ..     174     285 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4
                EE--SCCHHHHHHHHHHTT-EEEEE-S- CS
     3HCDH_N  4 viGaGtmGagiaavfasagleVvlvdis 31
                +iG G  G   a  + + g +V +v+ +
  CCG91647.1  8 IIGGGPAGYVAALRASQLGKKVAVVEAD 35
                8999999999898888889999999876 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 9.7e-06
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS- CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklk 56 
                 + ++G G +G + a+     g eV +v++++e+l    ++i+k l+k  +k+ ++
  CCG91647.1 175 ILIVGGGAIGVEFAYFYKCMGSEVIIVEMASEILPGTDSEISKALQKSFSKKGIT 229
                 789********************************************99998877 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.1        84      39      70 ..       6      37 ..       1      63 [. 0.74
   2 !   10.6   0.0   0.00033      0.27      37      68 ..     173     204 ..     155     224 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.1
                  EEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C 39 vGiiGlGrIGqavakrlkafgmkviaydrskk 70
                  + iiG G  G  +a r++++g kv +++  k 
    CCG91647.1  6 LIIIGGGPAGYVAALRASQLGKKVAVVEADKL 37
                  779**********************9987765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00033
                   SEEEEES-SHHHHHHHHHHHHTT-EEEEESSS CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgmkviaydrs 68 
                   k++ i+G G+IG ++a   k +g +vi+++  
    CCG91647.1 173 KKILIVGGGAIGVEFAYFYKCMGSEVIIVEMA 204
                   7899***********************98765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   0.00015      0.12      18      50 ..       4      35 ..       1      56 [. 0.82
   2 ?    1.6   0.0      0.17   1.4e+02      19      49 ..     174     203 ..     163     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailers 50
                 D++i+G+G++G  aa   ++  + kva++e+ 
  CCG91647.1  4 LDLIIIGGGPAGYVAALRASQL-GKKVAVVEAD 35
                69**************998888.99******86 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.17
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvailer 49 
                  ++ivG+G+ G+  ay      + +v+i+e 
  CCG91647.1 174 KILIVGGGAIGVEFAYFYKCM-GSEVIIVEM 203
                 689************987766.778888875 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0099       8.1       2      30 ..       7      35 ..       6      37 .. 0.90
   2 ?    2.9   0.0      0.15   1.2e+02       1      34 [.     175     208 ..     175     228 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0099
                EEES-SHHHHHHHHHHHH.TTEEEEEEESS CS
      TrkA_N  2 iiiGlGrvGrslaeeLse.ggkdvvvidkd 30
                iiiG G  G+  a + s+ g+ +v v++ d
  CCG91647.1  7 IIIGGGPAGYVAALRASQlGK-KVAVVEAD 35
                9*****************666.6*****98 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.15
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHH CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerv 34 
                 i+i+G G +G + a   +  g+ +v++++   e +
  CCG91647.1 175 ILIVGGGAIGVEFAYFYKCmGS-EVIIVEMASEIL 208
                 79************99998555.699999887765 PP

>> LpxI_N  LpxI N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.24   1.9e+02      60      92 ..     100     133 ..      69     146 .. 0.82
   2 ?    7.1   0.0     0.006       4.9       4      44 ..     176     216 ..     173     234 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.24
      LpxI_N  60 aLkregvtevvmaGkvekpklldlrp.Dlralkl 92 
                 ++k++g++ +   Gk++k+k  ++++ D ++ +l
  CCG91647.1 100 LFKSRGIQWIKAKGKINKDKKIRMTFpDGKTEEL 133
                 6899************998877666559888776 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.006
      LpxI_N   4 liAGsGrlPllvaeaakaagrevvvvalegeadeelekivd 44 
                 li G+G++ +++a  +k  g ev++v +  e+ +   ++++
  CCG91647.1 176 LIVGGGAIGVEFAYFYKCMGSEVIIVEMASEILPGTDSEIS 216
                 99*************************99988776666555 PP

>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.14   1.1e+02      22      52 ..       6      36 ..       2      42 .. 0.90
   2 ?    6.3   0.3    0.0068       5.6      15      63 ..     168     216 ..     161     301 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.14
                    EEEESSTTSHHHHHHTTSTT-SEEEEEES-H CS
  Spermine_synth 22 vLiiGGgDGgvlrevvkhntvekitlvdiDq 52
                     +iiGGg  g +  +   +  +k+ +v+ D+
      CCG91647.1  6 LIIIGGGPAGYVAALRASQLGKKVAVVEADK 36
                    679************999999*********8 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0068
                     CSSST-EEEEESSTTSHHHHHHTTSTT-.SEEEEEES-HHHHHHHHHHSH CS
  Spermine_synth  15 lhknpkevLiiGGgDGgvlrevvkhntv.ekitlvdiDqkvidfskkflp 63 
                     +   pk++Li+GGg  gv     +++++  ++ +v++ ++++    + + 
      CCG91647.1 168 TTRLPKKILIVGGGAIGVEFA-YFYKCMgSEVIIVEMASEILPGTDSEIS 216
                     55679********98877654.6788885567777776666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 3342.01
//
Query:       CCG91648.1  [L=411]
Description: Pyruvate/2-oxoglutarate dehydrogenase complex,dihydrolipoamide acyltransferase (E2) component or related enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-80  270.0   0.1      2e-80  269.6   0.1    1.2  1  2-oxoacid_dh     2-oxoacid dehydrogenases acyltransferase (ca
    3.7e-20   71.5   0.1    8.6e-20   70.3   0.1    1.7  1  Biotin_lipoyl    Biotin-requiring enzyme
    7.1e-17   61.5   0.4    1.5e-16   60.4   0.4    1.6  1  E3_binding       e3 binding domain
    0.00067   19.4   0.0     0.0023   17.7   0.0    1.9  1  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
      0.088   13.5   0.2       0.41   11.4   0.1    2.2  2  HlyD_3           HlyD family secretion protein


Domain annotation for each model (and alignments):
>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.6   0.1   5.5e-84     2e-80       4     232 ..     182     410 ..     179     411 .] 0.99

  Alignments for each domain:
  == domain 1  score: 269.6 bits;  conditional E-value: 5.5e-84
                   XXXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHHHHHHHHHTT-.----HHHHHHHHHHHHHHH-GGGG-EE.EESEEEE--SS--E CS
  2-oxoacid_dh   4 eervplsgirkaiakrlteskqeiphftlsdevdvtallelrkelkekeakeek.akltlldflikavalAlkefPelnasvdeeekeivvkkhvni 99 
                   e+++pls +r+ iakrl esk++iphf+l  e+ v++l +lr+el+   +++e+  k t++df++ka++ A+k++P +nas++ ++  i  ++ +ni
    CCG91648.1 182 ETKIPLSMMREKIAKRLLESKTTIPHFYLETEIFVSSLSRLRNELNLYYSQQEQpWKFTYNDFFLKATVEAVKKVPSVNASWNIDS--ILKHNVINI 276
                   789**********************************************99999********************************..********* PP

                   EEE--------EEEE--GGG--HHHHHHHHHHHHHHHTTT---GGGTSS-SEEEE---------------TT-SEEEEE---.B--TT.STT-HT-- CS
  2-oxoacid_dh 100 GvAvatprGLlvPviknadkkslleiakelkelaekaregklkpedleggtftisNlGmlGvtsftPiinppqvaIlgvgrikerpvv.kegelvvr 195
                   ++Ava+++GL++Pvikna +ksl++++ke kel++ka+e+kl+pe++ ggt+tisNlGm+G+++f +ii ppq++Il++g++ ++p + +++++ v+
    CCG91648.1 277 ALAVALEDGLITPVIKNARDKSLMTLSKEAKELIQKAQERKLSPEEYMGGTITISNLGMYGIDNFFAIIDPPQAMILAIGAVVKKPLIdSQNNIIVG 373
                   **************************************************************************************999******** PP

                   -EEEEEEEEETTT--HHHHHHHHHHHHHTT-HHXXXX CS
  2-oxoacid_dh 196 kvmtlslsaDHRvidGaeaarFlntlkkllenpeell 232
                   +v+ ++ s+DHRvidGa++a+Fl+++k+llenp ++l
    CCG91648.1 374 EVVRVTASCDHRVIDGATGAKFLKEFKSLLENPLSML 410
                   *********************************9998 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.1   2.4e-23   8.6e-20       1      73 []       2      75 ..       2      75 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 2.4e-23
                   TEEEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  1 keiksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73
                   kei++P +++s+ eg +v++l+k+Gd +++g+v+ae+e++K+ m++ea ++Gv+k+il +eG    v+ ++a i
     CCG91648.1  2 KEITMPLLSPSMSEGqIVRWLKKEGDPIQEGEVIAEIETDKAIMDLEAFESGVLKKILLPEGGRAPVNAPIALI 75
                   68********************************************************************9976 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.4   4.2e-20   1.5e-16       1      36 []     120     155 ..     120     155 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 4.2e-20
                 SBE-HHHHHHHHHCT--TTTS---CTTTBE-HHHHC CS
  E3_binding   1 vlAsPaaRklAkelGidLsdvkGtGpgGRItkeDVl 36 
                 ++ sP+aRk+A+e G++Ls+++GtGpgGRI+k+DVl
  CCG91648.1 120 IKSSPLARKIAREEGVELSSIQGTGPGGRILKRDVL 155
                 678********************************7 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.5e-07    0.0023       7      36 ..      11      41 ..       7      43 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 6.5e-07
  Biotin_lipoyl_2  7 apv.sGrVaqlnVkdGqrVkaGdvLaelDsr 36
                     ++   G++++++ k+G+ +++G v+ae++++
       CCG91648.1 11 PSMsEGQIVRWLKKEGDPIQEGEVIAEIETD 41
                     555579**********************976 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00011      0.41       7      37 ..      15      45 ..      12      54 .. 0.82
   2 ?   -3.7   0.0         5   1.8e+04      67      78 ..     369     380 ..     357     385 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
      HlyD_3  7 dGvvvelnveegevvqagdelleiippdtll 37
                 G++v +  +eg+++q+g++++ei  ++ ++
  CCG91648.1 15 EGQIVRWLKKEGDPIQEGEVIAEIETDKAIM 45
                69**********************9655443 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5
      HlyD_3  67 ytlkgkierisp 78 
                   + g+++r+++
  CCG91648.1 369 NIIVGEVVRVTA 380
                 345555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3193.51
//
Query:       CCG91649.1  [L=566]
Description: TPR repeats containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-17   60.9   5.6    2.9e-05   23.6   0.2    5.4  5  TPR_11           TPR repeat
    6.9e-13   47.6  19.4    0.00095   19.1   0.0    7.8  9  TPR_2            Tetratricopeptide repeat
    4.3e-12   45.5   2.4      0.098   13.1   0.0    5.1  4  TPR_17           Tetratricopeptide repeat
    8.1e-12   44.9   4.5    0.00016   22.2   0.0    5.8  6  TPR_14           Tetratricopeptide repeat
    1.5e-11   43.6  13.2     0.0047   16.7   0.0    6.5  7  TPR_1            Tetratricopeptide repeat
    1.4e-10   40.5  19.3    6.3e-05   22.9   0.0    7.2  7  TPR_8            Tetratricopeptide repeat
    7.9e-08   32.3   0.0    0.00098   19.2   0.0    2.7  2  TPR_9            Tetratricopeptide repeat
    1.5e-06   28.6  12.4    0.00065   20.2   0.6    4.5  4  TPR_19           Tetratricopeptide repeat
    6.1e-06   26.8   9.6    3.3e-05   24.4   0.2    3.9  3  TPR_16           Tetratricopeptide repeat
    0.00022   21.4   1.0      0.079   13.2   0.0    3.2  3  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    0.00077   19.7   9.5       0.22   11.9   0.0    4.8  5  TPR_12           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.025   14.2   0.1       0.21   11.2   0.0    2.7  2  HTH_Bact         Helix-turn-helix bacterial domain
      0.082   12.9   5.5       0.19   11.8   0.1    4.1  5  TPR_3            Tetratricopeptide repeat
      0.098   12.6   2.9         16    5.5   0.0    4.7  4  TPR_10           Tetratricopeptide repeat
       0.33   11.4   5.9       0.67   10.4   0.1    3.8  4  Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
        1.8    9.1   0.0        1.8    9.1   0.0    4.0  3  PIN_12           PIN domain
        3.7    8.4  10.2         46    5.0   0.1    5.9  6  TPR_6            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.8   1.9e+03       9      18 ..     104     113 ..     104     114 .. 0.87
   2 !   18.3   0.0   1.3e-06    0.0013       2      37 ..     389     424 ..     388     429 .. 0.92
   3 !   15.3   0.0   1.2e-05     0.012       9      42 .]     430     463 ..     426     463 .. 0.92
   4 !   23.6   0.2   2.8e-08   2.9e-05       1      40 [.     456     495 ..     456     497 .. 0.95
   5 !   12.1   0.2   0.00011      0.12      13      38 ..     502     527 ..     501     529 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.8
      TPR_11   9 kyeeAieaYk 18 
                 ++e Ai +Y+
  CCG91649.1 104 EWETAIVRYR 113
                 69*******8 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.3e-06
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGla 37 
                   +y+  +y+eA  +Y k l ldP++   ++nLGl+
  CCG91649.1 389 ARLYSEKRYKEAYDVYHKVLSLDPSSGIGWLNLGLV 424
                 579*******************************98 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 1.2e-05
      TPR_11   9 kyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 k+ eA   +kkA+++ P ++  y  LG++y+++G
  CCG91649.1 430 KNSEASLYLKKAVEFLPRDPMPYALLGQLYFQNG 463
                 778899999***********************99 PP

  == domain 4  score: 23.6 bits;  conditional E-value: 2.8e-08
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 G++y++ G +++A e  +kA+kldP+na +  +LG++y +
  CCG91649.1 456 GQLYFQNGSLTAATEMVEKAVKLDPQNAKLRKELGEIYKA 495
                 899***********************************86 PP

  == domain 5  score: 12.1 bits;  conditional E-value: 0.00011
      TPR_11  13 AieaYkkAlkldPdnaeayynLGlay 38 
                 A ++++kA++l+P +  a++ L+l+y
  CCG91649.1 502 AAKELNKAIELNPYDGMAHFDLALVY 527
                 8899*********************9 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2      0.03        31       6      30 ..      70      94 ..      65      96 .. 0.85
   2 ?   -2.3   0.3       6.6   6.9e+03      18      25 ..     242     249 ..     240     257 .. 0.53
   3 ?   -1.4   0.0       3.3   3.5e+03       6      19 ..     302     315 ..     301     315 .. 0.89
   4 !   19.1   0.0     9e-07   0.00095       4      33 ..     384     413 ..     381     414 .. 0.94
   5 ?    5.3   0.0     0.024        26       3      34 .]     417     448 ..     415     448 .. 0.92
   6 !   15.7   0.0   1.1e-05     0.012       4      34 .]     452     482 ..     449     482 .. 0.95
   7 !    8.1   1.2    0.0031       3.3       5      33 ..     487     515 ..     483     516 .. 0.87
   8 ?   -2.9   0.0       9.9     1e+04       3      12 ..     519     528 ..     518     529 .. 0.83
   9 ?    0.9   0.0      0.61   6.4e+02      18      30 ..     536     548 ..     535     549 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.03
       TPR_2  6 nlGlayyklgdyeeAleafekAlel 30
                + ++ ++ +++y eA++ ++ A +l
  CCG91649.1 70 READGLLSSKNYIEAEKKYRIAYSL 94
                67888999***********988766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.6
       TPR_2  18 eeAleafe 25 
                 e+Ale  +
  CCG91649.1 242 EKALEEAK 249
                 34444333 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3.3
       TPR_2   6 nlGlayyklgdyee 19 
                  lG+++ k+++ ee
  CCG91649.1 302 TLGQLLDKQKRIEE 315
                 59********9987 PP

  == domain 4  score: 19.1 bits;  conditional E-value: 9e-07
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 l+ +G  +y  ++y+eA + + k+l+ldP 
  CCG91649.1 384 LFDRGARLYSEKRYKEAYDVYHKVLSLDPS 413
                 899**************************6 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.024
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++ nlGl+ +++ +  eA  +++kA+e  P++
  CCG91649.1 417 GWLNLGLVTLAMEKNSEASLYLKKAVEFLPRD 448
                 7999***********************99875 PP

  == domain 6  score: 15.7 bits;  conditional E-value: 1.1e-05
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                 +  lG++y+++g +  A e  ekA++ldP+n
  CCG91649.1 452 YALLGQLYFQNGSLTAATEMVEKAVKLDPQN 482
                 678**************************97 PP

  == domain 7  score: 8.1 bits;  conditional E-value: 0.0031
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                  +lG++y ++g    A++ ++kA+el+P 
  CCG91649.1 487 KELGEIYKARGLELLAAKELNKAIELNPY 515
                 579999999999999************96 PP

  == domain 8  score: -2.9 bits;  conditional E-value: 9.9
       TPR_2   3 alynlGlayy 12 
                 a++ l+l+y+
  CCG91649.1 519 AHFDLALVYI 528
                 7999999995 PP

  == domain 9  score: 0.9 bits;  conditional E-value: 0.61
       TPR_2  18 eeAleafekAlel 30 
                 ++A+++++ A++l
  CCG91649.1 536 AQAKRHYRDAISL 548
                 689*******987 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.033        35       4      25 ..     406     428 ..     403     436 .. 0.78
   2 !   11.3   0.0   0.00035      0.37       2      30 ..     438     466 ..     437     470 .. 0.89
   3 !   13.1   0.0   9.3e-05     0.098       3      27 ..     473     497 ..     471     505 .. 0.89
   4 !   12.1   0.1    0.0002      0.21       3      24 ..     507     528 ..     505     546 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.033
      TPR_17   4 kaleldPnnadaynnLAe.lllk 25 
                 k+l ldP++   + nL+  +l++
  CCG91649.1 406 KVLSLDPSSGIGWLNLGLvTLAM 428
                 899**************933554 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00035
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlm 30 
                 ++ka+e  P ++ +y +L++l+ +nG l 
  CCG91649.1 438 LKKAVEFLPRDPMPYALLGQLYFQNGSLT 466
                 68**********************99765 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 9.3e-05
      TPR_17   3 lkaleldPnnadaynnLAelllknG 27 
                 +ka++ldP na++  +L+e+++ +G
  CCG91649.1 473 EKAVKLDPQNAKLRKELGEIYKARG 497
                 89********************998 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 0.0002
      TPR_17   3 lkaleldPnnadaynnLAelll 24 
                  ka+el+P +  a++ LA ++ 
  CCG91649.1 507 NKAIELNPYDGMAHFDLALVYI 528
                 79****************9995 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       6.5   6.9e+03      10      30 ..      74      94 ..      70     111 .. 0.71
   2 !   10.7   0.0   0.00073      0.77       5      42 ..     385     422 ..     382     424 .. 0.89
   3 ?    4.4   0.0     0.079        83       4      44 .]     418     458 ..     417     458 .. 0.88
   4 !   22.2   0.0   1.5e-07   0.00016       4      43 ..     452     491 ..     449     492 .. 0.94
   5 !   10.9   0.1   0.00066       0.7       2      42 ..     484     524 ..     483     526 .. 0.93
   6 ?    2.6   0.1       0.3   3.2e+02      17      36 ..     535     555 ..     523     559 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 6.5
      TPR_14 10 allalGdpdeAiallrralal 30
                 ll + ++ eA++ +r a +l
  CCG91649.1 74 GLLSSKNYIEAEKKYRIAYSL 94
                577778888888888877664 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00073
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawllla 42 
                  ++++ l+   +++eA ++++++l+l+P++   wl l+
  CCG91649.1 385 FDRGARLYSEKRYKEAYDVYHKVLSLDPSSGIGWLNLG 422
                 57888899999******************999999886 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.079
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 +l l+ + la ++  eA  +l++a++  P d+  + ll+ql
  CCG91649.1 418 WLNLGLVTLAMEKNSEASLYLKKAVEFLPRDPMPYALLGQL 458
                 6667777788889999999*******************997 PP

  == domain 4  score: 22.2 bits;  conditional E-value: 1.5e-07
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +++l+++++++G + +A ++ ++a++l+P++a ++ +l++
  CCG91649.1 452 YALLGQLYFQNGSLTAATEMVEKAVKLDPQNAKLRKELGE 491
                 7899**********************************98 PP

  == domain 5  score: 10.9 bits;  conditional E-value: 0.00066
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 +++++l+e++ a+G    A++ l++a++l+P d  a++ la
  CCG91649.1 484 KLRKELGEIYKARGLELLAAKELNKAIELNPYDGMAHFDLA 524
                 57899********************************9998 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.3
      TPR_14  17 pdeAiallrralala.Pddae 36 
                  ++A +++r+a++l+ P+d++
  CCG91649.1 535 VAQAKRHYRDAISLGvPKDER 555
                 579**********97688876 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       8.9   9.4e+03      13      25 ..      77      89 ..      75      91 .. 0.76
   2 ?   -0.5   0.0       1.2   1.3e+03       7      19 ..     303     315 ..     301     315 .. 0.90
   3 !   14.8   0.0   1.8e-05     0.019      11      33 ..     391     413 ..     384     414 .. 0.89
   4 !    8.2   0.0    0.0022       2.3       3      33 ..     417     447 ..     416     448 .. 0.93
   5 !   16.7   0.0   4.5e-06    0.0047       4      34 .]     452     482 ..     450     482 .. 0.95
   6 !    6.5   1.0    0.0074       7.8       5      32 ..     487     514 ..     483     516 .. 0.70
   7 ?   -1.9   0.1       3.4   3.6e+03      19      30 ..     537     548 ..     536     548 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.9
                HTT-HHHHHHHHH CS
       TPR_1 13 klgkydeAleyye 25
                + ++y eA++ y+
  CCG91649.1 77 SSKNYIEAEKKYR 89
                6689999998775 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.2
                 HHHHHHHTT-HHH CS
       TPR_1   7 lGnayfklgkyde 19 
                 lG+++ k+++ +e
  CCG91649.1 303 LGQLLDKQKRIEE 315
                 9*********987 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 1.8e-05
                 HHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  11 yfklgkydeAleyyekALelnPn 33 
                 +++ ++y+eA + y k+L+l+P+
  CCG91649.1 391 LYSEKRYKEAYDVYHKVLSLDPS 413
                 7899******************7 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                  + nlG++ + ++k  eA  y +kA+e  P 
  CCG91649.1 417 GWLNLGLVTLAMEKNSEASLYLKKAVEFLPR 447
                 59*************************9886 PP

  == domain 5  score: 16.7 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnPnn 34 
                 +  lG++yf++g +  A e  ekA++l+P+n
  CCG91649.1 452 YALLGQLYFQNGSLTAATEMVEKAVKLDPQN 482
                 678**************************97 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.0074
                 HHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnP 32 
                 + lG +y   g    A +  +kA+elnP
  CCG91649.1 487 KELGEIYKARGLELLAAKELNKAIELNP 514
                 6677777777777777777888888888 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 3.4
                 HHHHHHHHHHHH CS
       TPR_1  19 eAleyyekALel 30 
                 +A  +y+ A++l
  CCG91649.1 537 QAKRHYRDAISL 548
                 79999*999986 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       4.8   5.1e+03      24      32 ..     241     249 ..     227     255 .. 0.66
   2 ?    3.7   0.1     0.082        87       7      24 ..     303     320 ..     302     326 .. 0.93
   3 !    7.1   0.0    0.0069       7.3      13      33 ..     393     413 ..     383     414 .. 0.91
   4 ?    6.5   0.0      0.01        11       4      29 ..     418     443 ..     417     447 .. 0.95
   5 !   22.9   0.0   5.9e-08   6.3e-05       4      34 .]     452     482 ..     451     482 .. 0.97
   6 !    8.4   0.5    0.0026       2.8       7      32 ..     489     514 ..     488     516 .. 0.94
   7 ?   -2.1   0.0       6.2   6.6e+03      19      30 ..     537     548 ..     536     548 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.8
                 HHHHHHHHH CS
       TPR_8  24 yekaleldp 32 
                 +ekale ++
  CCG91649.1 241 LEKALEEAK 249
                 555555443 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.082
                 HHHHHHHTT-HHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyy 24 
                 lg++++k++++ee ke++
  CCG91649.1 303 LGQLLDKQKRIEEEKEAL 320
                 8**************987 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0069
                 HTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyekaleldpd 33 
                 + ++y+eA  +y k+l+ldp+
  CCG91649.1 393 SEKRYKEAYDVYHKVLSLDPS 413
                 679****************96 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.01
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekale 29 
                 ++nlg++ l +++  eA  y++ka+e
  CCG91649.1 418 WLNLGLVTLAMEKNSEASLYLKKAVE 443
                 99**********************98 PP

  == domain 5  score: 22.9 bits;  conditional E-value: 5.9e-08
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 y +lg++y++ g + +A e  eka++ldp+n
  CCG91649.1 452 YALLGQLYFQNGSLTAATEMVEKAVKLDPQN 482
                 899**************************96 PP

  == domain 6  score: 8.4 bits;  conditional E-value: 0.0026
                 HHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldp 32 
                 lg iy+  g    A + ++ka+el+p
  CCG91649.1 489 LGEIYKARGLELLAAKELNKAIELNP 514
                 89***********************9 PP

  == domain 7  score: -2.1 bits;  conditional E-value: 6.2
                 HHHHHHHHHHHH CS
       TPR_8  19 eAkeyyekalel 30 
                 +Ak  y+ a++l
  CCG91649.1 537 QAKRHYRDAISL 548
                 79999****997 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0    0.0003      0.32       3      68 ..     389     454 ..     388     458 .. 0.91
   2 !   19.2   0.0   9.3e-07   0.00098       2      65 ..     456     519 ..     455     526 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0003
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeai 68 
                 a++ +e+++ +a  v+  +l l+P +   ++  Gl+   ++  s+A   L  +++  p +p  +a+
  CCG91649.1 389 ARLYSEKRYKEAYDVYHKVLSLDPSSGIGWLNLGLVTLAMEKNSEASLYLKKAVEFLPRDPMPYAL 454
                 567789****************************************************99866665 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 9.3e-07
       TPR_9   2 kaiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65 
                  +++ ++    +a ++ve  + l+P+ + +r + G ++  +G    A+++L+ +++l+p +  a
  CCG91649.1 456 GQLYFQNGSLTAATEMVEKAVKLDPQNAKLRKELGEIYKARGLELLAAKELNKAIELNPYDGMA 519
                 57999******************************************************87655 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.5         2   2.1e+03      41      55 ..     245     259 ..     240     273 .. 0.76
   2 !   13.4   0.0     8e-05     0.084       1      68 []     391     458 ..     391     458 .. 0.95
   3 !   20.2   0.6   6.1e-07   0.00065       2      56 ..     460     514 ..     459     524 .. 0.91
   4 ?    2.6   0.1      0.19     2e+02      10      37 ..     502     529 ..     500     531 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2
      TPR_19  41 ldeAealLdalpeed 55 
                 l+eA+++ ++l ee+
  CCG91649.1 245 LEEAKKTAQQLKEEN 259
                 789999999988887 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 8e-05
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAkl 68 
                 l+ e++y eA + + ++l+ dp ++  +l+L  + la+    eA   L+++ e  p d+   +Ll++l
  CCG91649.1 391 LYSEKRYKEAYDVYHKVLSLDPSSGIGWLNLGLVTLAMEKNSEASLYLKKAVEFLPRDPMPYALLGQL 458
                 57799****************************************************99999999886 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 6.1e-07
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                 +++g +++A ++ e+a + dp+na +r  L e++ a g    A + L+++ e +p
  CCG91649.1 460 FQNGSLTAATEMVEKAVKLDPQNAKLRKELGEIYKARGLELLAAKELNKAIELNP 514
                 689**********************************998888888888888777 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.19
      TPR_19  10 AlalleqalqedpknaearllLAealla 37 
                 A++ l +a++ +p ++ a  +LA ++++
  CCG91649.1 502 AAKELNKAIELNPYDGMAHFDLALVYIS 529
                 7889999****************99996 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1       1.4   1.5e+03       3      24 ..      71      92 ..      69     100 .. 0.86
   2 ?    6.2   0.0     0.015        16       2      67 ..     386     448 ..     385     449 .. 0.81
   3 !   24.4   0.2   3.2e-08   3.3e-05       3      67 ..     455     516 ..     453     517 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.4
      TPR_16  3 laraalragdyddAaaaleaal 24
                +a+ +l +++y +A++ +++a 
  CCG91649.1 71 EADGLLSSKNYIEAEKKYRIAY 92
                688899999*********9986 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.015
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 +++  ++  ++y +A  +++ +l +d   P     +l+lg++ l+     eA  ++++a++  p +
  CCG91649.1 386 DRGARLYSEKRYKEAYDVYHKVLSLD---PSSGIGWLNLGLVTLAMEKNSEASLYLKKAVEFLPRD 448
                 6777899999****************...***********99886666666666777777766666 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 3.2e-08
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 l+++++++g  ++A ++ e a+k+d   P++a  + +lg+++ ++g   +Aa  +++a++  p++
  CCG91649.1 455 LGQLYFQNGSLTAATEMVEKAVKLD---PQNAKLRKELGEIYKARGLELLAAKELNKAIELNPYD 516
                 89***********************...************************8888888999986 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.9   7.3e+03      42      42 ..      84      84 ..      62     100 .. 0.53
   2 !    7.0   0.4    0.0062       6.5      33      81 ..     391     440 ..     388     441 .. 0.83
   3 !   13.2   0.0   7.5e-05     0.079       6      59 ..     432     486 ..     427     494 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.9
                H CS
      ANAPC3 42 A 42
                A
  CCG91649.1 84 A 84
                1 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0062
                 HHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  33 lylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 ly+ ++yk+Ay++++k   l+++s   ++ ++ + l+++k  eA   L+k
  CCG91649.1 391 LYSEKRYKEAYDVYHKVlSLDPSSGIGWLNLGLVTLAMEKNSEASLYLKK 440
                 899**************888888877788888888888888888766665 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 7.5e-05
                 HHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHH CS
      ANAPC3   6 knAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcr 59 
                  +A +++ ++++  +++p    ll++ +++ng  + A e ++ka kl++++ + r
  CCG91649.1 432 SEASLYLKKAVEFLPRDPMPYALLGQLYFQNGSLTAATEMVEKAvKLDPQNAKLR 486
                 6899999***************************************999998755 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0         1   1.1e+03      13      32 ..      75      94 ..      69     101 .. 0.80
   2 ?   -1.9   0.1       4.1   4.3e+03      24      42 ..     243     261 ..     238     274 .. 0.67
   3 ?   -2.6   0.0       6.5   6.8e+03      50      66 ..     302     318 ..     301     321 .. 0.78
   4 !   11.9   0.0   0.00021      0.22      22      75 ..     393     445 ..     384     447 .. 0.88
   5 !    9.5   0.4    0.0011       1.2       8      66 ..     454     511 ..     450     514 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1
      TPR_12 13 lrrlgrydeAlellekalei 32
                l+  ++y eA++ ++ a+ +
  CCG91649.1 75 LLSSKNYIEAEKKYRIAYSL 94
                66778999999999888766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.1
      TPR_12  24 ellekaleiarrllGpdhp 42 
                 + le+a   a++l +++++
  CCG91649.1 243 KALEEAKKTAQQLKEENSL 261
                 4556666666666666665 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 6.5
      TPR_12  50 nLgrlyralgryeeAle 66 
                 +Lg+l+++++r ee  e
  CCG91649.1 302 TLGQLLDKQKRIEEEKE 318
                 68999999999888655 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 0.00021
      TPR_12  22 AlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +++ +++a++++ ++l    p   +   nLg + +a+++  eA  +l++a++ +
  CCG91649.1 393 SEKRYKEAYDVYHKVLSL-DPSSGIGWLNLGLVTLAMEKNSEASLYLKKAVEFL 445
                 578899999999999865.689999*************************9875 PP

  == domain 5  score: 9.5 bits;  conditional E-value: 0.0011
      TPR_12   8 nlaavlrrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyralgryeeAle 66 
                  l++++++ g ++ A e+ eka+ +  +++  + + ++ +++ + g  ++a++++ +A+e
  CCG91649.1 454 LLGQLYFQNGSLTAATEMVEKAVKLDpQNA--KLRKELGEIYKARGLELLAAKELNKAIE 511
                 488888888888888888888888887777..5566677777777777777777777776 PP

>> HTH_Bact  Helix-turn-helix bacterial domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.9     2e+03      17      28 ..     292     306 ..     290     311 .. 0.84
   2 ?   11.2   0.0    0.0002      0.21      23      36 ..     453     466 ..     433     479 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.9
                 HHTTB-TT...HHHH CS
    HTH_Bact  17 irinsMsL...lGQL 28 
                 ++ ++M+L   lGQL
  CCG91649.1 292 LQRENMVLkktLGQL 306
                 578999998889998 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.0002
                 TTHHHHHHHHHHHH CS
    HTH_Bact  23 sLlGQLyYqkgecl 36 
                 +LlGQLy+q g++ 
  CCG91649.1 453 ALLGQLYFQNGSLT 466
                 8**********975 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1       0.9   9.5e+02      14      29 ..      78      91 ..      77      95 .. 0.78
   2 ?   -1.9   0.0       3.3   3.5e+03      10      19 ..     272     281 ..     271     281 .. 0.86
   3 ?   11.8   0.1   0.00018      0.19       8      29 ..     388     408 ..     383     409 .. 0.86
   4 ?   -1.4   0.0       2.3   2.4e+03      15      29 ..     490     501 ..     488     504 .. 0.78
   5 ?   -3.0   0.0       7.5   7.9e+03      15      23 ..     504     512 ..     497     512 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.9
                TT-HHHHHHH..HHHH CS
       TPR_3 14 kkkyqeArelfsYall 29
                +k+y eA+    Y+ +
  CCG91649.1 78 SKNYIEAEKK--YRIA 91
                79*****988..7666 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.3
                 HHHHTT-HHH CS
       TPR_3  10 efynkkkyqe 19 
                 +++n+k++++
  CCG91649.1 272 SLHNQKEISQ 281
                 69*****986 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00018
                 HHHHHHTT-HHHHHHH..HHHH CS
       TPR_3   8 AaefynkkkyqeArelfsYall 29 
                 +a +y+ k+y eA+++++ ++l
  CCG91649.1 388 GARLYSEKRYKEAYDVYH-KVL 408
                 7899************98.665 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 2.3
                 T-HHHHHHH..HHHH CS
       TPR_3  15 kkyqeArelfsYall 29 
                 +++++Ar+l    ll
  CCG91649.1 490 GEIYKARGL-E--LL 501
                 89*****99.4..55 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 7.5
                 T-HHHHHHH CS
       TPR_3  15 kkyqeArel 23 
                 k++++A+el
  CCG91649.1 504 KELNKAIEL 512
                 8899**998 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       7.6     8e+03      23      39 ..     243     259 ..     242     260 .. 0.74
   2 ?    1.0   0.0      0.39   4.1e+02      22      37 ..     394     409 ..     386     413 .. 0.64
   3 ?    2.0   0.0      0.19     2e+02       7      30 ..     420     443 ..     419     445 .. 0.94
   4 ?    5.5   0.0     0.015        16       8      30 ..     455     477 ..     452     478 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7.6
      TPR_10  23 alleealairrrllGpd 39 
                 + leea  + ++l +++
  CCG91649.1 243 KALEEAKKTAQQLKEEN 259
                 56799989988887766 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.39
      TPR_10  22 ealleealairrrllG 37 
                 e+ ++ea++++ ++l 
  CCG91649.1 394 EKRYKEAYDVYHKVLS 409
                 4446677777777665 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.19
      TPR_10   7 NLanalrqrgrydeAealleeala 30 
                 NL+ +  ++ +  eA  +l++a++
  CCG91649.1 420 NLGLVTLAMEKNSEASLYLKKAVE 443
                 9*********************97 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.015
      TPR_10   8 LanalrqrgrydeAealleeala 30 
                 L+ +++q g +++A ++ e+a+ 
  CCG91649.1 455 LGQLYFQNGSLTAATEMVEKAVK 477
                 9********************96 PP

>> Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.8   6.1e+03      81     102 ..      84     110 ..      72     138 .. 0.58
   2 ?   -2.3   0.3       5.5   5.8e+03      71      97 ..     243     253 ..     218     285 .. 0.49
   3 ?    1.6   0.0      0.33   3.5e+02      57      75 ..     325     343 ..     321     442 .. 0.63
   4 ?   10.4   0.1   0.00063      0.67      77     117 ..     457     497 ..     416     510 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.8
                      HTT-HHHHHHHHHHHHHHSTT.....- CS
  Alkyl_sulf_dimr  81 kegdyrwaaellnhlvfadpe.....n 102
                      +e++yr+a +ll  l +  pe      
       CCG91649.1  84 AEKKYRIAYSLLGSLRATYPEwetaiV 110
                      567899999998888877666333331 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.5
                      HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  Alkyl_sulf_dimr  71 kvlekakealkegdyrwaaellnhlvf 97 
                      k le+a                ++  +
       CCG91649.1 243 KALEEA----------------KKTAQ 253
                      222222................22222 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.33
                      HHHHHHHHHTTSHHHHHHH CS
  Alkyl_sulf_dimr  57 ekakrlvelmGgaekvlek 75 
                      eka++l++++G++e+vl++
       CCG91649.1 325 EKANKLLAFIGEKEEVLAE 343
                      5666777777766665543 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00063
                      HHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHH CS
  Alkyl_sulf_dimr  77 kealkegdyrwaaellnhlvfadpenaeakelkadaleqlg 117
                      + ++++g + +a e+++++v  dp+na+ ++ + ++++++g
       CCG91649.1 457 QLYFQNGSLTAATEMVEKAVKLDPQNAKLRKELGEIYKARG 497
                      56789**********************99999888888776 PP

>> PIN_12  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   2.4       1.9     2e+03      30      51 ..     145     169 ..      82     217 .. 0.52
   2 ?   -1.4   0.1       2.8   2.9e+03      68     109 ..     353     394 ..     323     410 .. 0.57
   3 ?    9.1   0.0    0.0017       1.8      87     146 ..     484     546 ..     458     550 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.9
      PIN_12  30 sgkikliv...pdivldEflknrek 51 
                 +++++l+v   p++ l+E++  ++k
  CCG91649.1 145 DNNLSLLVnpqPSVSLEELQALKNK 169
                 2222222211122222222222222 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.8
      PIN_12  68 klksakkklnekkkllslkeikkkieekveeslkklleklea 109
                  + + k+k++ +++ +sl   k+++ e+++  +++  + ++ 
  CCG91649.1 353 SMAALKQKTQIEPAAQSLAFRKESVVEEIRNLFDRGARLYSE 394
                 444455555555555555556665555555555554444444 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0017
      PIN_12  87 eikkkieekvees...lkkllekleaikvipetndevkkilerafkkkpPfskkkkkgfgDal 146
                 ++ k++ e ++++   l + +e ++ai+ +p++  ++++++  +++ +pP   + k  ++Da+
  CCG91649.1 484 KLRKELGEIYKARgleLLAAKELNKAIELNPYDGMAHFDLALVYISYNPPLVAQAKRHYRDAI 546
                 33444444444445458888999999*************************999********9 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1       0.4   4.2e+02      10      32 ..      81     104 ..      75     104 .. 0.84
   2 ?    1.5   0.2      0.54   5.6e+02      13      29 ..     243     258 ..     234     260 .. 0.81
   3 ?    5.0   0.1     0.043        46       7      33 .]     389     414 ..     384     414 .. 0.87
   4 ?   -0.3   0.0         2   2.1e+03       5      31 ..     454     480 ..     452     482 .. 0.74
   5 ?   -1.8   0.0         6   6.3e+03       6      30 ..     489     513 ..     488     514 .. 0.67
   6 ?   -0.7   0.0       2.8     3e+03       2      27 ..     519     546 ..     519     548 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.4
                 HHH.HHHHHHHHHHHHHHHHH-TT CS
       TPR_6  10 yrk.lgdtdkAlealerlikeYPd 32 
                 y++  ++++ A  +l +l+  YP+
  CCG91649.1  81 YIEaEKKYRIAYSLLGSLRATYPE 104
                 7775689999************95 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.54
                 HHHHHHHHHHHHHHHHH CS
       TPR_6  13 lgdtdkAlealerlike 29 
                     ++A+++ ++l +e
  CCG91649.1 243 K-ALEEAKKTAQQLKEE 258
                 4.7899*******9886 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.043
                 HHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   7 alsyrklgdtdkAlealerlikeYPdS 33 
                 a++y +  ++ +A + + ++++  P S
  CCG91649.1 389 ARLYSEK-RYKEAYDVYHKVLSLDPSS 414
                 6788878.**************99987 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYP 31 
                 +l+++y++ g  ++A e+ e+ +k  P
  CCG91649.1 454 LLGQLYFQNGSLTAATEMVEKAVKLDP 480
                 599****98788888777777777666 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 6
                 HHHHHHHHHHHHHHHHHHHHHHHH- CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeY 30 
                 l++ y++ g    A + l++ i+  
  CCG91649.1 489 LGEIYKARGLELLAAKELNKAIELN 513
                 7888888666667777777777655 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 2.8
                 HHHHHHHHHHH.H.HHHHHHHHHHHHHH CS
       TPR_6   2 Alyklalsyrk.l.gdtdkAlealerli 27 
                 A + lal y++      ++A++ +++ i
  CCG91649.1 519 AHFDLALVYISyNpPLVAQAKRHYRDAI 546
                 5677888888745335669999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2737  (0.152658); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.04u 0.28s 00:00:01.32 Elapsed: 00:00:00.48
# Mc/sec: 3520.38
//
Query:       CCG91650.1  [L=325]
Description: Pyruvate/2-oxoglutarate dehydrogenase complex,beta subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-42  144.8   0.0      3e-42  144.3   0.0    1.2  1  Transket_pyr     Transketolase, pyrimidine binding domain
    1.3e-34  118.7   0.0    5.2e-34  116.8   0.0    1.9  2  Transketolase_C  Transketolase, C-terminal domain
  ------ inclusion threshold ------
      0.075   13.3   0.0       0.14   12.5   0.0    1.4  1  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma
       0.13   12.0   0.0        2.1    8.0   0.0    2.2  2  FMN_red          NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.3   0.0   6.7e-46     3e-42       3     176 ..       4     178 ..       2     180 .. 0.98

  Alignments for each domain:
  == domain 1  score: 144.3 bits;  conditional E-value: 6.7e-46
                   EEHHHHHHHHHHHHHCTTTTEEEEESSTH..HHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGG..HHGGHHH CS
  Transket_pyr   3 iawrkaeaealaellkedpevvligaDva..ggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangA..qiyadqa 95 
                   +++r+a++eal+e+l++d+ v+lig++v+  gg f+v +gll+++g++r+id++isE+a++g avGa + g l++ive++   Fa +A  qi++++ 
    CCG91650.1   4 LTYRQALNEALSEELERDNTVFLIGEEVGeyGGAFKVSQGLLKKFGPERIIDTPISEAAFTGLAVGAVMYG-LRPIVEFMNWSFALVAfdQIINNAG 99 
                   79*********************************************************************.9************************ PP

                   HHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  96 irsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                    ++ +++g+++ ++v+r p g g +  + +s +le++l+ +p +++++P+ pa++k+ll+ air  +++Pv++++ ++l+ 
    CCG91650.1 100 SIRFMSGGQFNFPIVFRGPSGGGTQIGATHSHSLENWLANVPTFTIINPAFPADAKGLLKSAIR--SNNPVCFFEGERLYG 178
                   ****************************************************************..789******999985 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.33   1.5e+03      40      80 ..     145     183 ..     138     186 .. 0.83
   2 !  116.8   0.0   1.2e-37   5.2e-34       1     122 [.     194     314 ..     194     316 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.33
                      EEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHH CS
  Transketolase_C  40 VvdlrtvkplDketilesvkktgrlvvveeavkrgGigsev 80 
                      ++++ +  p D + +l+s+ + +  v++ e+ +  Gi  ev
       CCG91650.1 145 IINPAF--PADAKGLLKSAIRSNNPVCFFEGERLYGIQGEV 183
                      555555..899999999999999999999999999999888 PP

  == domain 2  score: 116.8 bits;  conditional E-value: 1.2e-37
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdglda 94 
                      gka+i+ egkdvt+++ G   +++l+A e+L+ke+is+e++dlrt+kp D++++++s++kt+rlv+vee+ ++ G g+++a  +++ +fd+lda
       CCG91650.1 194 GKAQIVTEGKDVTVLSSGFSTHVVLQALETLSKENISVEIIDLRTIKPYDFDLVASSIEKTNRLVIVEEGKPFAGWGAQIAYDVQRLLFDELDA 287
                      89******************************************************************************************** PP

                      EEEEEEE-SSSSSSGHHHHHHHTT-SHH CS
  Transketolase_C  95 pvkrvggpdviepgsaeelekafgldae 122
                      p+ rv   d++ p++  +le+++++++ 
       CCG91650.1 288 PIYRVSNLDIPNPYN-GKLEQEILPNPL 314
                      ***************.99*******985 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.2e-05      0.14       2      82 ..     204     286 ..     203     296 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.2e-05
                 SEEEEE-STHHHHHHHHHHHHHHTT--EEEEEES--BS--HHHHHHHSTT-SEEEEEE-S--TT-G.-HHHHHHHHHTGGG.T CS
     PFOR_II   2 evvivamGsvagtaksavdelReegikvGllrlrtlrPFPeeelkellkkvkkvvvldrnisfgse.Gqlveevkaalkks.k 82 
                 +v ++  G +  ++ +a ++l +e i+v ++ lrt+ P+  + +++ ++k++++v ++    f     q++ +v++ l ++ +
  CCG91650.1 204 DVTVLSSGFSTHVVLQALETLSKENISVEIIDLRTIKPYDFDLVASSIEKTNRLVIVEEGKPFAGWgAQIAYDVQRLLFDElD 286
                 678899999999*******************************************99999988766589******99988744 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.053   2.4e+02     118     151 ..     120     153 ..     107     156 .. 0.80
   2 ?    8.0   0.0   0.00048       2.1      14      48 ..     211     246 ..     206     274 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.053
                 -SSTTTTHHHHHHHHHHHHHTT-EEEECSEEEET CS
     FMN_red 118 gggrrgglraeeqlrqvlaelgaivvpraavavg 151
                 ggg + g+   ++l ++la++ + ++ ++a+ ++
  CCG91650.1 120 GGGTQIGATHSHSLENWLANVPTFTIINPAFPAD 153
                 678889999**********766666666577765 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00048
                 -HHHHHHHHHHCCT-T.T-CEEEEETTTS.--....- CS
     FMN_red  14 sntrklaewaaealkeagaevelidladlilpc..al 48 
                 +++  ++ +a+e+l ++++ ve+idl+ + +p   +l
  CCG91650.1 211 GFSTHVVLQALETLSKENISVEIIDLRTI-KPYdfDL 246
                 566777888889998889**********7.8844444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2177.73
//
Query:       CCG91651.1  [L=357]
Description: Pyruvate/2-oxoglutarate dehydrogenase complex,dehydrogenase (E1) component, alpha subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-92  308.4   0.1    4.4e-92  308.2   0.1    1.0  1  E1_dh            Dehydrogenase E1 component
    8.3e-07   28.9   1.5    2.8e-06   27.2   0.8    2.3  2  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
    8.6e-07   28.4   0.0    1.9e-06   27.3   0.0    1.6  1  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
     0.0022   17.0   0.0     0.0038   16.2   0.0    1.3  1  Transketolase_N  Transketolase, thiamine diphosphate binding 


Domain annotation for each model (and alignments):
>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.2   0.1   9.7e-96   4.4e-92       2     299 ..      34     330 ..      32     331 .. 0.97

  Alignments for each domain:
  == domain 1  score: 308.2 bits;  conditional E-value: 9.7e-96
                 HHHHHHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TTSEEEESS--HHHHHHTT--HHHHHHHHTT-T....TTSSGTT-.-E..BTT..B CS
       E1_dh   2 klvllrrvedaldalykrkkrigfyhlsagqealkvgiaaalekeDliiteYReagvllarglsleeilaeltgkv....kgkggsrhelmyaekesri 96 
                 ++vl+rr+e++ ++++ + k+ gf+hl++gqea++vg+ aa+ +eD+++t+YR++g+ larg+s ++ +ael+gk     kg ggs+h l +++k+  +
  CCG91651.1  34 MMVLIRRFEEKSSQSFMQAKIKGFCHLCIGQEAIAVGVCAAIGPEDVVVTAYRDHGIALARGVSPKACMAELYGKStgtsKGMGGSMH-LFDKRKK--F 129
                 68899***********************************************************************999999999999.8877777..* PP

                 EEE-SSTTTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEEEETT CS
       E1_dh  97 lggngivgaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygisTeaekasaskeladrargvgipglrVdgn 195
                 +gg+ iv+aq p++aG+a+a+++ ++++v+++l GDgA nqG ++e+lnl +lwklpv++++eNN+y+++Te ++++a   l+++ +++ ++g+ +dg+
  CCG91651.1 130 FGGHAIVAAQCPIAAGVAFAQRYLKENTVTVCLLGDGAVNQGVFHETLNLVSLWKLPVVYIIENNQYAMGTEIHRSTAGLPLVKKSVAYDMAGMVIDGM 228
                 *************************************************************************************************** PP

                 SHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHS CS
       E1_dh 196 DplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeelkeiekevrkeveeavkkaesk 294
                  +++v++ v +Aa+ ar+++ p+lie+ tYR+ gHs+sD p tyrt+ee+ e++k  dpi+ + +lL + g+++++   +i+ke++k ++eav+ aes+
  CCG91651.1 229 NVEEVRKKVLEAANLARNENCPVLIEARTYRFRGHSMSD-PDTYRTKEEIAEAKKR-DPIALYSQLLLDLGILTRDLIAQIDKEIKKVIQEAVQYAESS 325
                 ***************************************.899**99999998887.****************************************** PP

                 ----G CS
       E1_dh 295 kelep 299
                 +e+++
  CCG91651.1 326 PEPDL 330
                 *9975 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.8   6.2e-10   2.8e-06      11     152 ..     119     254 ..     109     255 .. 0.65
   2 ?   -2.1   0.0      0.67     3e+03     129     141 ..     307     317 ..     256     324 .. 0.47

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 6.2e-10
                   HHHTTSSSSEEECETTTS-TTTHHHHHHHHHHH....STTSEEEEEEEHHHHHHT.GGGHHHHHHT.T-SEEEEEEE-SBCCCHHHHHHHHTCCTTT CS
  TPP_enzyme_C  11 rllkvkrprsyltsgglgtmGyglpaAiGakla....kpdrevvaivGDGgflmi.lqelatavrr.nlpitvvvlnNegygmtggqqepfggkrks 101
                    +  + + ++++   g++    + p+A G+++a    k++   v++ GDG+     ++e+ + v   +lp+++++ nN++ + t+ + + +g     
    CCG91651.1 119 SMHLFDKRKKFFG--GHAIVAAQCPIAAGVAFAqrylKENTVTVCLLGDGAVNQGvFHETLNLVSLwKLPVVYIIENNQYAMGTEIHRSTAGLPLVK 213
                   4444555666666..9****************64444667899********99998*********9667**********999888886655542211 PP

                   TSBB.BS----HHHHHHH.TTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEE CS
  TPP_enzyme_C 102 gpagkdlkpvdfaklaea.lGakgarvekadveeleealkealekkgpalie 152
                   +     +   d+a ++   + ++     ++  +++ ea   a++++ p+lie
    CCG91651.1 214 K-----SVAYDMAGMVIDgMNVE--E--VR--KKVLEAANLARNENCPVLIE 254
                   1.....22233333222212222..1..22..44455555555777777776 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.67
                   SH.HHHHHHHHHH CS
  TPP_enzyme_C 129 kadveeleealke 141
                    +  +e++++++e
    CCG91651.1 307 ID--KEIKKVIQE 317
                   22..444444444 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   4.3e-10   1.9e-06     109     200 ..     130     223 ..     112     261 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 4.3e-10
  DXP_synthase_N 109 eagHs..stsisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNemsisknvGalskylskllsskayeklkk 200
                       gH+  ++   +a G+a a+++ +e++ +v+++GDga+  G+ +e+ln ++  k  ++ i+ +N+ ++ +++   ++ l  +++s ay+ +  
      CCG91651.1 130 FGGHAivAAQCPIAAGVAFAQRYLKENTVTVCLLGDGAVNQGVFHETLNLVSLWKLPVVYIIENNQYAMGTEIHRSTAGLPLVKKSVAYDMAGM 223
                     456762234456899***************************************************9998888766666665555555555554 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.6e-07    0.0038     145     244 ..     157     258 ..     134     283 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.6e-07
                      --EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTEEGGGT--S.-HHHHHHHTT-EEEEETTTT-HHHHHHHHHHH.H..H-TT CS
  Transketolase_N 145 hytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidGeteisfte.dvakrfeaygWhvievedgedveaikaaieea.k..aekd 234
                        t ++lgDg ++ Gv +e+ +l +  kL  ++ + ++n+ ++  e++ s++     k+  ay+   + v dg +ve++++ + ea +  ++++
       CCG91651.1 157 TVTVCLLGDGAVNQGVFHETLNLVSLWKLP-VVYIIENNQYAMGTEIHRSTAGlPLVKKSVAYDMAGM-VIDGMNVEEVRKKVLEAaNlaRNEN 248
                      46889********************99996.68889*******9999998876246677777776544.3778888887665544313112347 PP

                      S-EEEEEE-- CS
  Transketolase_N 235 kPsliklrtv 244
                       P li+ rt 
       CCG91651.1 249 CPVLIEARTY 258
                      8****99995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2400.77
//
Query:       CCG91652.1  [L=454]
Description: 4-aminobutyrate aminotransferase or related aminotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-94  314.6   0.0    8.9e-94  314.4   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
  ------ inclusion threshold ------
      0.063   12.4   0.0       0.26   10.4   0.0    1.9  2  Aminotran_1_2  Aminotransferase class I and II
      0.087   12.5   0.3       0.18   11.5   0.3    1.5  1  Spore_YhaL     Sporulation protein YhaL


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.4   0.0   1.5e-97   8.9e-94       9     406 .]      34     444 ..      27     444 .. 0.94

  Alignments for each domain:
  == domain 1  score: 314.4 bits;  conditional E-value: 1.5e-97
                  SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..S....EEEEESSHHHHHHH CS
  Aminotran_3   9 lllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgld....kvflansGseAvet 102
                   +++ ++a+Gv ++dvdg++ylDl +++ v++lG++hPk+   + +q+++l+hv+  ++ +++ ++l++ l +++ ++ +    kv+l  +Gs+A+e+
   CCG91652.1  34 GPIFWQQAKGVHVWDVDGNKYLDLSGGFGVAALGYRHPKIYRSLLNQLDTLWHVMGDVYPSKEKVELCRLLSQITFEKWEnqrgKVILGCTGSDAIEA 131
                  46999************************************************************************9999999************** PP

                  HHHHHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB.-TSEEEE-TTBGGGTB-HH...HHHHHHHHHH..HHHHCHTCCCEE CS
  Aminotran_3 103 AlKlarkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpf.lpevvrlkypdeevlkene...eeeaalleel..ealekkkkdeva 194
                  AlK+a+       +t+k+k+i+f g++HG  lgal+v g  +  ++ ++ + +p  ++l+yp ++ +  +     ++++l e l  e+lek++++   
   CCG91652.1 132 ALKTAFF------HTKKNKFITFYGGYHGLSLGALAVNGL-DDFRKPLEGLyAPIASFLPYPSCIDCIDKSqslTQKDCLCEPLfeEKLEKMIHEGYG 222
                  *******......***************************.77777777773677789*****999877775665566666665446788******** PP

                  EEEE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS....B- CS
  Aminotran_3 195 AvivEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs....hg 288
                  A+++Ep qg gG+vv+++ fl  lr + +kh++lli+DE+ tG+ rTGk f+++ ag+ pD+++l+K+++g +p+sa +++++vm+ + +++    h 
   CCG91652.1 223 AILFEPLQGRGGIVVPPDWFLPLLRRMSTKHNILLIADEIFTGLYRTGKRFGCDVAGIVPDIICLGKSMAGAFPISACIGRENVMDSWPKNDgeaiHT 320
                  ****************************************************************************************877799**** PP

                  -TTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC....HHHHHHHHHCTEE-EEETT..T CS
  Aminotran_3 289 sTfgGnplacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke....keilkkakekGvlilsaGd..n 380
                  sTf Gnp+ c++a++ ++ +e+++ +  ++e+g+++ + L++l+k+ + +k+ RgkGl++++++++e+        ++i+ k+++kG+++l+ G+  n
   CCG91652.1 321 STFLGNPIGCRMAIEQIKELEKKHEQLFIEEKGEYFLSLLNNLSKRFNCLKNPRGKGLFLGVDIVDEKGCPApeiaAKIVIKMLQKGIIVLTEGPfrN 418
                  ******************************************************************998655889999******************9* PP

                  EEEE---TT--HHHHHHHHHHHHHHH CS
  Aminotran_3 381 virllppliitdeeidelleilkkal 406
                  v++++pplii+ ++i  ++ il++++
   CCG91652.1 419 VLSFTPPLIISFKQIGSVVRILEQII 444
                  **********************9997 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.12   7.2e+02      61      97 ..     110     146 ..      92     161 .. 0.64
   2 ?   10.4   0.0   4.4e-05      0.26     174     333 ..     247     411 ..     209     423 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.12
                    TTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEE CS
  Aminotran_1_2  61 eklklkreaavvvgsGagaliealifllklnpgdeil 97 
                    ek + +r + ++ ++G++a+ +al++++ + ++ +++
     CCG91652.1 110 EKWENQRGKVILGCTGSDAIEAALKTAFFHTKKNKFI 146
                    4555566656667777888777777777444554444 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 4.4e-05
                    HHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTT.SSGGG-EEEEEEEH.HHHHHHHHHHHHHTSSHH.HHHHHHHHHHH CS
  Aminotran_1_2 174 ldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKaf.GlaGeRvGyilgna.avvsqlrklsrpflsssl.lqaavaaalsd 266
                     ++ +k+n+ll+ De++ g++ + +++    ++v+  + ++i+  l+K++ G+    + +++g +  + s+ ++   ++  s+  + ++   ++  
     CCG91652.1 247 RRMSTKHNILLIADEIFTGLYRTGKRF---GCDVAGIVPDIIC--LGKSMaGAF--PISACIGREnVMDSWPKNDGEAIHTSTFlGNPIGCRMAIE 335
                    3457899****************9877...5566666666666..445552222..2466888661444555555555555554155666666666 PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHS..TEEEECCS..CSSEEEEEETHH.......CHHHHHHHHHHTCTEEEE CS
  Aminotran_1_2 267 allkqseleemrqrlqkrrkelrdeLael..glkvlasq..sgmflltdlsae.......takelskkLleevgvyvt 333
                    + ++  e + ++  ++++ +++ + L++l   +++l+++   g+fl +d+  e        a ++  k+l++ g++v+
     CCG91652.1 336 QIKE-LEKKHEQLFIEEKGEYFLSLLNNLskRFNCLKNPrgKGLFLGVDIVDEkgcpapeIAAKIVIKMLQK-GIIVL 411
                    6653.2555555567888888888888888888888888444555555555556775555444555556666.55554 PP

>> Spore_YhaL  Sporulation protein YhaL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3     3e-05      0.18      18      46 ..     332     361 ..     328     366 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3e-05
  Spore_YhaL  18 mavktake.EreldqefIEkEGevylerle 46 
                 ma++  ke E++ +q fIE+ Ge +l  l+
  CCG91652.1 332 MAIEQIKElEKKHEQLFIEEKGEYFLSLLN 361
                 7888888779***************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 2833.32
//
Query:       CCG91653.1  [L=122]
Description: putative pterin-4-alpha-carbinolamine dehydratase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-28   98.0   0.2    3.1e-28   97.8   0.2    1.1  1  Pterin_4a  Pterin 4 alpha carbinolamine dehydratase


Domain annotation for each model (and alignments):
>> Pterin_4a  Pterin 4 alpha carbinolamine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.2   1.7e-32   3.1e-28       3      90 ..      20     110 ..      18     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 1.7e-32
   Pterin_4a   3 lseeeiqkllaelpgWr...leeaeelerefkfkdfeeaiafvnrvaalaeeenHhpdilvsynkvtvrltThdaggltenDfklAakide 90 
                 +++ee + l ++ p+W+   ++  e ler+++f df++a+ f++rv++lae+e+Hhp+il++++kvtv+++Th+++gl++nDf++Aak+d+
  CCG91653.1  20 VTPEEKEILSRQIPEWKiveKNGVEMLERKYEFPDFASALMFTERVGKLAENEKHHPSILTEWGKVTVWWWTHKINGLHRNDFIMAAKTDS 110
                 5666666666566****975336668***************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.52
# Mc/sec: 704.80
//
Query:       CCG91654.1  [L=292]
Description: Cytochrome c family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-11   42.5   0.0    1.1e-10   41.7   0.0    1.5  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    3.8e-06   27.9   1.9    8.8e-05   23.6   1.9    2.5  1  Cytochrom_C      Cytochrome c


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   1.2e-14   1.1e-10       3      67 .]      35     110 ..      33     110 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.2e-14
  Cytochrome_CBB3   3 aaaGaalykk.nCasCHgkggag...pslagrdwe....pdalvdiiknGk..gaMp.afggqlsdeelwalvaYl 67 
                      + +G++ly k  C++CHg+gg+g   ps+ +++w     +++l++ ik  +  + Mp  fgg l+d+e+w++++++
       CCG91654.1  35 VSQGKELYFKmGCNGCHGAGGGGgmcPSFIDDTWVfgsdDQTLFKLIKGQIpqQTMPrMFGGVLTDDEIWKVITFV 110
                      5799****9989******777777******99777655479****9998886569**66677***********997 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   1.9   9.8e-09   8.8e-05       2      90 ..      36     112 ..      35     114 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 9.8e-09
                  --HHHHH.HTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHHT CS
  Cytochrom_C   2 arGkelf.tanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYLks 90 
                   +Gkel+ + +C +CHg++ggg      p + + ++  +++ ++ ++  +       ++++    +++ +++   lt++ei++++ +++ 
   CCG91654.1  36 SQGKELYfKMGCNGCHGAGGGGGM---CPSFIDDTWVFGSDDQTLFKLIKG------QIPQ----QTMPRMFGGVLTDDEIWKVITFVRY 112
                  68******************9986...599999999999999999999882......2222....2333444457************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2106.32
//
Query:       CCG91655.1  [L=290]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-13   50.9   0.0    1.9e-13   50.4   0.0    1.2  1  SBP_bac_3  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0     1e-17   1.9e-13      18     219 ..      47     258 ..      37     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1e-17
                 TS-EESHHHHHHHHHHHHCT-EEEEEE-.SGGGHH.HHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGTCCHSSCGCGTTSEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  18 ngeltGfdvdlakaiakrlgvkvefvpv.swdeli.palksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaskissiksladLkgkkvg 114
                 n++l+Gf+  +a+ +a++l v + + ++    +l+ + lk gk+ ++i ++  t     +v+ ++py++++ v++++k++  +i+s++++  Lk  k+g
  CCG91655.1  47 NQKLEGFENKIAQIVADSLHVPLSYYWFaHQRGLVrNTLKIGKCNVII-GVPSTW---GQVLTTKPYYRTSYVMVYKKDKGLNIQSLDDP-ALKHLKIG 140
                 788***********************97666666659***********.565555...68******************778899999988.69999*** PP

                 EETTSHHHHHHHHHHHC.............TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE.....ECGGCECEEEEEEETTT CS
                 xxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxx RF
   SBP_bac_3 115 vqagstaeellkeelkk.............gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv.....eeplsseeyaiavrkgd 195
                 v  +s  ++ll+e   k             +    + d     ++++ ++++d  ++  pv+  ++kk++++  ++      +    + ++ ++v+kgd
  CCG91655.1 141 VLINSPPHQLLAE---KgiienvvgyspffDPVFHPEDFPGKIVEEVLSDKIDIGLVWGPVAGFYIKKKGAALTMVPltsnnPRIPMAFDISMGVKKGD 236
                 ********99998...33334455555544433356666777799*****************************999*9999999999*********** PP

                 HHHHHHHHHHHHHHHHTTHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 196 seLrkainkalaelkadgtlakis 219
                 +eL++++++++++    g++ +  
  CCG91655.1 237 QELKNKLDQVIDSK--HGEILQVL 258
                 ***********974..35555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1787.33
//
Query:       CCG91656.1  [L=611]
Description: Methanol dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-23   81.0  19.7    1.3e-07   31.2   0.0    8.3  7  PQQ       PQQ enzyme repeat
    2.5e-22   79.6   1.0    2.7e-12   46.8   0.1    3.7  4  PQQ_2     PQQ-like domain
    4.2e-19   68.4  22.5    2.6e-06   27.7   0.2    6.6  7  PQQ_3     PQQ-like domain


Domain annotation for each model (and alignments):
>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.7   5.5e-05      0.33       2      19 ..      98     116 ..      97     137 .. 0.77
   2 !   31.2   0.0   2.2e-11   1.3e-07       1      27 [.     151     177 ..     151     186 .. 0.94
   3 !    9.2   0.1    0.0002       1.2       9      24 ..     210     225 ..     208     233 .. 0.89
   4 ?    3.8   0.8     0.011        63      18      37 ..     316     335 ..     316     336 .. 0.92
   5 ?    3.0   0.0     0.019   1.1e+02       9      25 ..     361     377 ..     355     386 .. 0.75
   6 ?    1.5   0.0     0.056   3.4e+02      14      37 ..     482     505 ..     476     506 .. 0.84
   7 !   26.4   0.1   6.9e-10   4.1e-06       2      37 ..     511     546 ..     510     547 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.5e-05
                 EEEEE.ETTSEEEEEETTT CS
         PQQ   2 vvylg.sadGylyAlDadT 19 
                 ++y++  +++++yAlD++ 
  CCG91656.1  98 TMYVHsAYPNHVYALDLTQ 116
                 89**************986 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 2.2e-11
                 TEEEEEETTSEEEEEETTTCCEEEEEE CS
         PQQ   1 gvvylgsadGylyAlDadTGkvlWrfk 27 
                 g++++++ dG++ AlDa+TGk+lW+ k
  CCG91656.1 151 GKIFMTTLDGQIIALDANTGKELWKMK 177
                 79**********************986 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0002
                 TSEEEEEETTTCCEEE CS
         PQQ   9 dGylyAlDadTGkvlW 24 
                  G++ A+D++TG+ +W
  CCG91656.1 210 RGRVGAYDINTGNRVW 225
                 58999*********** PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.011
                 TTCCEEEEEESSSCGSSESE CS
         PQQ  18 dTGkvlWrfktggpvlslpi 37 
                 dTGk +W ++  +++ ++++
  CCG91656.1 316 DTGKARWAYQMTPWDSWDYD 335
                 7***************9985 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.019
                 TSEEEEEETTTCCEEEE CS
         PQQ   9 dGylyAlDadTGkvlWr 25 
                 +G  y lD++TG+++  
  CCG91656.1 361 NGFGYVLDRRTGQLIEA 377
                 555599******99865 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.056
                 EEETTTCCEEEEEESSSCGSSESE CS
         PQQ  14 AlDadTGkvlWrfktggpvlslpi 37 
                  +Da  Gk +W+  +  pv+s p+
  CCG91656.1 482 CYDALKGKRVWEIHEHFPVWSGPV 505
                 678888******999999999987 PP

  == domain 7  score: 26.4 bits;  conditional E-value: 6.9e-10
                 EEEEEETTSEEEEEETTTCCEEEEEESSSCGSSESE CS
         PQQ   2 vvylgsadGylyAlDadTGkvlWrfktggpvlslpi 37 
                   ++g+ dG + A+D++TGkvlW+ k+g+ + + pi
  CCG91656.1 511 LAFYGTMDGWFKAVDIKTGKVLWQQKLGSGIIGNPI 546
                 56899*************************999887 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0027        16     195     230 ..      75     116 ..      37     125 .. 0.70
   2 !   46.8   0.1   4.5e-16   2.7e-12      16     148 ..      77     227 ..      69     239 .. 0.80
   3 ?    1.3   0.0     0.035   2.1e+02     135     150 ..     311     326 ..     307     398 .. 0.71
   4 !   27.2   0.0   4.3e-10   2.6e-06      36     151 ..     462     538 ..     364     563 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0027
       PQQ_2 195 rl.wskeiss...inglpildgdllyvvsa..gelialdrat 230
                 rl ws + ++     g p++ g + yv+sa  ++++ald+  
  CCG91656.1  75 RLaWSFSTGAlrgHEGGPLVVGTTMYVHSAypNHVYALDLTQ 116
                 34453333334447788************88*******9876 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 4.5e-16
       PQQ_2  16 lWrvdlar..plgggvsravlsggtlfva.tgggrlvaldaatG..kvlWettlegpvvga...........plvaegrvvvvasdgqlialdaedGkr 98 
                  W+++ +   ++ gg+   ++ g t +v   + + ++ald + +  +++W++t+ +  ++               a+g+++  + dgq+ialda++Gk+
  CCG91656.1  77 AWSFSTGAlrGHEGGP---LVVGTTMYVHsAYPNHVYALDLTQKpyAIKWQYTPVQNSQAVavaccdvvnrgLAYANGKIFMTTLDGQIIALDANTGKE 172
                 5666432211345555...4488888888569999*****88886689*****95554444679**999999999999********************* PP

       PQQ_2  99 lWstqqrseepaelrssaspavagdtvvvges......sgklvaldpkdGkvlWer 148
                 lW ++ +   +     +++p v++d+v+vg s      +g++ a+d+ +G+++W +
  CCG91656.1 173 LWKMKHADVTKG-ETITGAPLVVKDKVLVGVSggefgvRGRVGAYDINTGNRVWLA 227
                 ***666664333.5889999999*********999*99****************65 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.035
       PQQ_2 135 valdpkdGkvlWerel 150
                  a++p++Gk +W ++ 
  CCG91656.1 311 FARRPDTGKARWAYQM 326
                 5889999999998876 PP

  == domain 4  score: 27.2 bits;  conditional E-value: 4.3e-10
       PQQ_2  36 ggtlfva......tgggrlvaldaatGkvlWettlegpvvgap.lvaegrvvvvasdgqlialdaedGkrlWstqqrseepaelrssaspavagdtvvv 127
                 +++l         +++g ++++da  Gk +We     pv + p   a+g ++  + dg + a+d+++Gk+lW+                          
  CCG91656.1 462 ANVLMYSghegkdDYYGAFICYDALKGKRVWEIHEHFPVWSGPvVTAGGLAFYGTMDGWFKAVDIKTGKVLWQ-------------------------- 534
                 3333333344444466667777777777777766544444444244455556666777777777777777777.......................... PP

       PQQ_2 128 gessgklvaldpkdGkvlWerela 151
                                     ++l+
  CCG91656.1 535 --------------------QKLG 538
                 ....................3332 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   8.1e-06     0.048       3      38 ..      76     114 ..      75     115 .. 0.92
   2 !   20.7   0.0   6.9e-08   0.00041      12      40 .]     141     169 ..     120     169 .. 0.79
   3 !   11.0   0.2   7.7e-05      0.46       1      40 []     170     220 ..     170     220 .. 0.75
   4 ?   -3.7   0.0         3   1.8e+04       1       8 [.     318     325 ..     318     328 .. 0.83
   5 !   27.7   0.2   4.3e-10   2.6e-06       1      40 []     488     528 ..     488     528 .. 0.95
   6 !    7.6   0.3   0.00091       5.4       1      18 [.     529     549 ..     529     572 .. 0.72
   7 ?   -3.5   0.1       2.8   1.7e+04      18      26 ..     599     607 ..     585     609 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.1e-06
       PQQ_3   3 vlWsvqlpg.pvn.sspavdgglvyvgtg.dGtlyAlDa 38 
                 + Ws+++++ +++ ++p+v+g + yv +   +++yAlD 
  CCG91656.1  76 LAWSFSTGAlRGHeGGPLVVGTTMYVHSAyPNHVYALDL 114
                 68*******97778************************7 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 6.9e-08
       PQQ_3  12 pvnsspavdgglvyvgtgdGtlyAlDaet 40 
                  vn+++a+++g+++++t dG + AlDa+t
  CCG91656.1 141 VVNRGLAYANGKIFMTTLDGQIIALDANT 169
                 578999*********************98 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 7.7e-05
       PQQ_3   1 GevlWsv...ql..pgpvnsspavdgglvyvgtg......dGtlyAlDaet 40 
                 G++lW+    ++  ++ ++++p+v+ ++v vg +       G++ A+D +t
  CCG91656.1 170 GKELWKMkhaDVtkGETITGAPLVVKDKVLVGVSggefgvRGRVGAYDINT 220
                 99*****77744334488888977766666666669999999999999877 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 3
       PQQ_3   1 GevlWsvq 8  
                 G+ +W++q
  CCG91656.1 318 GKARWAYQ 325
                 8899*998 PP

  == domain 5  score: 27.7 bits;  conditional E-value: 4.3e-10
       PQQ_3   1 GevlWsvqlpgpvnssp.avdgglvyvgtgdGtlyAlDaet 40 
                 G+++W+   + pv+s+p +++ggl + gt+dG + A+D +t
  CCG91656.1 488 GKRVWEIHEHFPVWSGPvVTAGGLAFYGTMDGWFKAVDIKT 528
                 999**************788******************988 PP

  == domain 6  score: 7.6 bits;  conditional E-value: 0.00091
       PQQ_3   1 GevlWsvqlpgpvnssp...a 18 
                 G+vlW+++l++ + + p   +
  CCG91656.1 529 GKVLWQQKLGSGIIGNPitfL 549
                 9**********9998885441 PP

  == domain 7  score: -3.5 bits;  conditional E-value: 2.8
       PQQ_3  18 avdgglvyv 26 
                 +++gg +yv
  CCG91656.1 599 TTVGGELYV 607
                 455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4136.27
//
Query:       CCG91657.1  [L=396]
Description: Permease of the major facilitator superfamily [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-44  150.3  10.8    7.9e-44  149.9  10.8    1.1  1  MFS_3     Transmembrane secretion effector
    3.4e-28   98.6  87.7    3.6e-24   85.4  45.9    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        8.5    5.6   7.2         32    3.8   7.2    2.0  1  SLATT_5   SMODS and SLOG-associating 2TM effector domain fami


Domain annotation for each model (and alignments):
>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9  10.8   1.3e-47   7.9e-44       8     385 ..      11     386 ..       8     395 .. 0.89

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 1.3e-47
       MFS_3   8 rqkvFrviWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwll 106
                 + k +r+ +i + +s +G++i+ ++ sWl  +++ sp+   +v   +t+P +l+s l+G  aD f + k+l+  q      s +l +l++l++++ + l
  CCG91657.1  11 SYKSYRIAFIGQSISFIGSWIHFIGQSWLAYQLTHSPIGLGMVGFGSTIPSLLFSFLSGMTADRFPKLKILILSQFSNCCLSFFLGLLSYLKMINFYEL 109
                 56789999******************************************************************************************* PP

       MFS_3 107 laltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylalivallrw.krevrksslprEkll 204
                 l l++ +gi   l  P+ q  +   +++++++ A+a+n+  +n aR +GPA++G+++ + G+ + f +n +sy+  i  ++++   + r ++ p+    
  CCG91657.1 110 LLLSFAMGIFNNLELPSRQTLLLSYLPNNEIKRAIAMNAFLFNSARLIGPAVAGIILPLYGPSICFFINGISYILSIGSFIWAsSTNERIKDQPSG--- 205
                 **************************************************************************9998766540334444444443... PP

       MFS_3 205 ealraglRftaasrei..kavlvRaalFglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllsl 301
                 ++ +    f+ +s++     ++v +++  l+  +   LLP +  +  + ++    ++ +a G GAi +all s+  +r+ss++l +l+++ + + l+  
  CCG91657.1 206 RS-TKNNFFVLISNPAvfYPSIVLGIV-TLFGWSYSVLLPYISSQIYHQGSKGLALFYSANGFGAISAALLISFFPNRFSSSTLQTLSMIIFSFSLFLF 302
                 33.344557777776311233443332.3344455569************************************************************* PP

       MFS_3 302 alasslwvavlvlllgGaaWitalstlnvavqlavPrWvvgRalavYltvlaGglaaGsllWGavaealsvtlaLlaaaaalll 385
                 ++ ++ +  +l++ ++G +  + +s      q  + + ++g a+ +    ++G +a G ll G++a+ l+ +l+L+++++  + 
  CCG91657.1 303 SFFPPFFFSILIVSFLGFSLALFVSATTMFLQERISDSMRGMAFGLTTFFFQGFFAIGNLLMGTLAQFLGTKLSLMIGSVICFT 386
                 *******************9999999999***********************************************99886654 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4  45.9     6e-28   3.6e-24       2     345 ..      19     353 ..      18     355 .. 0.82
   2 !   27.0  33.8   3.3e-10     2e-06       7     166 ..     230     389 ..     225     396 .] 0.87

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 6e-28
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa....sslwlllvlrvlq 95 
                 ++++ +s+++++i ++  + +la +l+ sp  +g++  + ++ ++++s++ G  +drf   ++l+l+ ++ +   ++l+l++    ++++ ll+l + +
  CCG91657.1  19 FIGQSISFIGSWIHFIGQS-WLAYQLTHSPIGLGMVGFGSTIPSLLFSFLSGMTADRFPKLKILILSQFSNCCLsFFLGLLSylkmINFYELLLLSFAM 116
                 89999********999999.9*************************************7777**********994444445456789999********* PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpa 194
                 G++  + +p+ ++l+  + p +e  rai++ +  f+ + ++gp+++g+++ ++g + +f+i++i ++l++     +++++ ++++ k +++     g++
  CCG91657.1 117 GIFNNLELPSRQTLLLSYLPNNEIKRAIAMNAFLFNSARLIGPAVAGIILPLYGPSICFFINGISYILSIG---SFIWASSTNERIK-DQPS----GRS 207
                 *********************************************************************77...5555544444433.3444....455 PP

       MFS_1 195 plvpawkallkdpvlw.illialllfffgfsg..lltllpl..ylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaa 288
                    + + ++ ++ v++ ++++++++ f g+s+  ll ++ +  y q   gl+ l++++   +++a+ +   all++++ +r+++ +  +l+++++++++
  CCG91657.1 208 TKNNFFVLISNPAVFYpSIVLGIVTLF-GWSYsvLLPYISSqiYHQGSKGLA-LFYSA--NGFGAISA---ALLISFFPNRFSSSTLQTLSMIIFSFSL 299
                 555544456666666674444444443.444444666666634666666666.66666..66666666...999*******999888888888888888 PP

       MFS_1 289 lglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntag 345
                 +++ +++++   ++++l++ ++Gf l++++++ + ++++ ++ +++g+a+gl+++++
  CCG91657.1 300 FLFSFFPPF---FFSILIVSFLGFSLALFVSATTMFLQERISDSMRGMAFGLTTFFF 353
                 888888888...889999999********************************9886 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 3.3e-10
       MFS_1   7 lsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fasslwlllvlrvlqGlgagalf 103
                 +++l  + ++++lp + ++ ++     + l +++ ++ga+ a+l+++++ +rf++  +  l++++f+++ l+l+  f +++++ ++   + G+  ++++
  CCG91657.1 230 IVTLFGWSYSVLLPYISSQIYHQGSKGLALFYSANGFGAISAALLISFFPNRFSSSTLQTLSMIIFSFS-LFLFsfF-PPFFFSILIVSFLGFSLALFV 326
                 4445555567788866688899777778889**********************9999************.4444445.999999999999********* PP

       MFS_1 104 pagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv 166
                 +a   ++ +  +++ rg+a+gl + +f+  +++g ll g la+ lg  ++ +i  ++++ af 
  CCG91657.1 327 SATTMFLQERISDSMRGMAFGLTTFFFQGFFAIGNLLMGTLAQFLGTKLSLMIGSVICFTAFF 389
                 *************************************************************66 PP

>> SLATT_5  SMODS and SLOG-associating 2TM effector domain family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   7.2    0.0053        32      30      83 ..     280     334 ..     279     336 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0053
     SLATT_5  30 nklstfslsllSvylivlslls.nkssestinenlldflsiilSilvlvislles 83 
                 n++s  +l+ lS+ ++ +sl++  +++ + ++  +++fl+++l+ +v +++++ +
  CCG91657.1 280 NRFSSSTLQTLSMIIFSFSLFLfSFFPPFFFSILIVSFLGFSLALFVSATTMFLQ 334
                 78999*****************99999********************99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2731.21
//
Query:       CCG91658.1  [L=205]
Description: HAD superfamily hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-14   54.9   0.0    1.2e-14   54.7   0.0    1.1  1  HAD_2      Haloacid dehalogenase-like hydrolase
    2.4e-07   31.3   0.0    9.8e-07   29.3   0.0    1.8  1  Hydrolase  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   1.4e-18   1.2e-14      57     176 ..      67     186 ..      27     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.4e-18
       HAD_2  57 eeeekieellrkyneekkkkevkpydgvkelLeeLkea.gyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkee 154
                    +++++ ++++++ +     +py++++el+++Lk++ +++l++ +++ re +   ++ +g+ +++d  ++s+ v+ +KPd ++++ al+  +  +++
  CCG91658.1  67 VFYQNRPFSMDDFRQFMFS-LSRPYPEMIELIKSLKNKyNLRLAVLSNEGRELQVYRIQTFGLYNFIDYFIVSSFVHLRKPDVDIFQLALDVSQSPPQS 164
                 3334788888999999999.999************654499********************************************************** PP

       HAD_2 155 viyvGDsptDieaakkagikvi 176
                 v+y++D p  +  a+ +gi++i
  CCG91658.1 165 VLYIEDRPMFVDIARSLGIEAI 186
                 ********99999999999988 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.1e-10   9.8e-07      74     200 ..      39     172 ..       6     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.1e-10
                 HHHHHHH..HCHHHHHHHHHHHHHHCHHHHHH......TTHHHHHHHHHHTHHBHTTHHHHHHHHHHT.TEEEEEEESSEHHHHHHHHHHTT.GGGESE CS
                 xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
   Hydrolase  74 pewltal..dippdlgaaigsaqsqgrtvall......qaralavftiadplkvkpeaaeavasLkaa.gievvlltgdnpetaeraanqlG.ddyfda 162
                 +e+ +++  ++ +  + + + +    rtv+++      ++    +f ++ p   +pe+ e+++sLk + ++++++l++  +e +   ++ +G  +++d 
  CCG91658.1  39 VEFEERHhlTFDTYEQGKLTLHDYLKRTVFYQnrpfsmDDFRQFMFSLSRP---YPEMIELIKSLKNKyNLRLAVLSNEGRELQVYRIQTFGlYNFIDY 134
                 555555555555555555666666677777777777655566666666655...**************999**************999999*6555588 PP

                 EEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 163 viasdietvakpspegkvaaireLqgkpeevamVGDgv 200
                  i s+ +   kp+ ++++ a++  q +p+ v+ ++D++
  CCG91658.1 135 FIVSSFVHLRKPDVDIFQLALDVSQSPPQSVLYIEDRP 172
                 89999999****************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1440.42
//
Query:       CCG91659.1  [L=381]
Description: ABC-type molybdate transport system, ATPase component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-33  114.5   0.0    8.6e-33  113.8   0.0    1.3  1  ABC_tran        ABC transporter
    1.9e-10   41.1   0.8    0.00021   21.2   0.1    2.3  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    5.7e-06   25.9   0.0      0.016   14.6   0.0    2.1  2  SMC_N           RecF/RecN/SMC N terminal domain
    3.7e-05   24.3   0.6    0.00014   22.5   0.6    1.9  1  AAA_23          AAA domain
    0.00017   21.8   0.1     0.0079   16.5   0.0    2.3  2  AAA_22          AAA domain
    0.00024   21.5   0.6    0.00068   20.1   0.6    1.7  1  AAA_16          AAA ATPase domain
    0.00028   21.1   0.0      0.042   14.1   0.0    2.9  2  TOBE            TOBE domain
     0.0019   17.9   0.0     0.0038   16.9   0.0    1.4  1  AAA_29          P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.025   14.5   0.1      0.044   13.7   0.0    1.5  1  ATPase_2        ATPase domain predominantly from Archaea
      0.041   13.8   0.0      0.087   12.7   0.0    1.5  1  RsgA_GTPase     RsgA GTPase
      0.068   12.6   0.1       0.16   11.4   0.1    1.5  1  HOK_GEF         Hok/gef family
      0.077   12.7   0.1       0.14   11.9   0.1    1.4  1  Cytidylate_kin  Cytidylate kinase
      0.099   12.8   0.3       0.32   11.1   0.3    2.0  1  AAA_33          AAA domain
       0.12   12.3   0.6       0.32   10.9   0.1    1.8  2  NACHT           NACHT domain
       0.12   12.4   0.0       0.49   10.5   0.0    1.8  2  DUF87           Helicase HerA, central domain
       0.12   12.4   0.0       0.23   11.5   0.0    1.6  1  MMR_HSR1        50S ribosome-binding GTPase
       0.15   12.3   0.0       0.31   11.3   0.0    1.5  1  AAA_28          AAA domain
       0.18   11.5   0.1       0.35   10.6   0.0    1.5  2  AAA_24          AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   8.6e-36   8.6e-33       4     137 .]      25     172 ..      23     172 .. 0.95

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 8.6e-36
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren..............esdee 84 
                 ++l l + +++ai+G++G+GKStLl+++agl  p+ G i++ ++ + +    ++ + ++++ig++ qe+ lfp+l+v++n              e++++
  CCG91659.1  25 LTLPLFPASLIAIFGPSGSGKSTLLRCIAGLDIPDHGIIKVGEELWLDtekkINVPPYKRSIGYVVQEDALFPHLKVEDNvgyglknqlkltqtEARDK 123
                 567788999******************************99988888888889999***********************************99999999 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + +al+k+g+++l+ +      ++LSgG+++rvalara++++pkllllDEp +
  CCG91659.1 124 ARQALRKVGIEHLASRWP----QTLSGGERRRVALARAIAREPKLLLLDEPLN 172
                 ************888887....*****************************86 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   2.2e-06    0.0022       2      22 ..      35      55 ..      34      78 .. 0.83
   2 !   21.2   0.1   2.1e-07   0.00021     237     297 ..     144     202 ..     138     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.2e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                 ++ Gp gsGKS+LL+++ +l
  CCG91659.1 35 IAIFGPSGSGKSTLLRCIAGL 55
                689***************988 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 2.1e-07
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv.iltTH 297
                 lS G +r  al+ a++r +   +lll+DEp ngL+ k  + l +l++e +++++ + +l +H
  CCG91659.1 144 LSGGERRRVALARAIAREP---KLLLLDEPLNGLDFKSKEFLRQLIEEIASENGRLtVLISH 202
                 7999999999999999999...9*************99999999996666657777788888 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00077      0.76      22      44 ..      30      52 ..      17      54 .. 0.86
   2 !   14.6   0.0   1.7e-05     0.016     125     213 ..     126     218 ..      88     223 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00077
                TTSSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 22 fsksftaivGpNGSGKsnlldAi 44
                f  s+ ai Gp GSGKs ll  i
  CCG91659.1 30 FPASLIAIFGPSGSGKSTLLRCI 52
                5678899***********99877 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.7e-05
                 HHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 125 ellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgvtk 213
                 + l+++gi+        +LSgGe+  vala  +A    +   l llDe    LD+k  + + +l++e  ++     + is++++ + ++ ++vg+  
  CCG91659.1 126 QALRKVGIEHLasrwpqTLSGGERRRVALARAIA----REPKLLLLDEPLNGLDFKSKEFLRQLIEEIASEngRLTVLISHEKTEIIQMARFVGIID 218
                 455555555434444449*******999887655....444599**********************7544323556779**************9976 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.6   1.4e-07   0.00014      18      41 ..      31      54 ..      13     210 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.4e-07
      AAA_23 18 skgltlItGpNGaGKTTildAikl 41
                   l +I+Gp G+GK+T+l++i  
  CCG91659.1 31 PASLIAIFGPSGSGKSTLLRCIAG 54
                45789*****************75 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.9e-06    0.0079       5      25 ..      32      52 ..      29      60 .. 0.89
   2 ?    3.0   0.1      0.11   1.1e+02      54     112 ..     121     185 ..     112     229 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.9e-06
      AAA_22  5 agilvvtGesGtGKTtllrrl 25
                a++++++G+sG+GK+tllr +
  CCG91659.1 32 ASLIAIFGPSGSGKSTLLRCI 52
                789***************976 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.11
      AAA_22  54 kdllrellralglelka....erlsseell.ealeqalraravielliiDEaqh.lr..seealeeL 112
                 +d +r+ lr++g e+ a    ++ls  e +  al++a+ +  +  ll++DE  + l+  s+e l++L
  CCG91659.1 121 RDKARQALRKVGIEHLAsrwpQTLSGGERRrVALARAIAREPK--LLLLDEPLNgLDfkSKEFLRQL 185
                 5556666666666666666554444444444666666666655..8888887777755445555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.6   6.8e-07   0.00068      25     167 ..      33     196 ..      28     200 .. 0.55

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.8e-07
      AAA_16  25 elvllsGesGvGKsslvrellr.alekdggif.....lrgkcdqlesa...ipysa.laqalareellrqllde.............aesaeleawrek 100
                 +l+ + G+sG+GKs+l+r+++   + ++g i      l  + d   ++    py   +  +  ++ l+  l+ e             ++     ++r+k
  CCG91659.1  33 SLIAIFGPSGSGKSTLLRCIAGlDIPDHG-IIkvgeeL--WLDTE-KKinvPPYKRsIGYVVQEDALFPHLKVEdnvgyglknqlklTQ----TEARDK 123
                 67899****************73455553.33233221..22221.2223356644344444455666666666555555554443311....112222 PP

      AAA_16 101 leeala..avpelagaea........srllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrlles..kpl 167
                  ++al+   + +la+  +        +r + +l+r++   +r e++l+l+ + l  +d+ s ++l++L ++  s  ++l
  CCG91659.1 124 ARQALRkvGIEHLAS--RwpqtlsggERRRVALARAI---AR-EPKLLLLDEPLNGLDFKSKEFLRQLIEEIASenGRL 196
                 222222221222222..13344445588888888888...33.444777777899*********999999876642344 PP

>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.07        69       3      37 ..     246     275 ..     244     299 .. 0.64
   2 !   14.1   0.0   4.2e-05     0.042       2      64 .]     316     376 ..     316     376 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.07
        TOBE   3 arNqlpgtVvvveplgseveVrvdlgggatLtArv 37 
                 ++N++pg+++ ++ ++    Vr+ ++ g  + A++
  CCG91659.1 246 IENIVPGEILDITNGN----VRMKTPIGL-VEAVL 275
                 89********999988....555555555.55555 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 4.2e-05
        TOBE   2 sarNqlpgtVvvveplgseveVrvdlgggatLtArvtrrsaeeLgLapGeeVfalikaakvhl 64 
                 s rN++ gt++ +   ++ ++V +d+g    LtA ++ ++  eL+++ G+ V  l+ka+ +hl
  CCG91659.1 316 SVRNRFIGTIKKIKINEGFAQVFIDCGMV--LTALISHNALFELKIREGDSVCSLLKAGGIHL 376
                 78************************765..6********************99999998886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.8e-06    0.0038      22      42 ..      32      52 ..      24      62 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.8e-06
      AAA_29 22 kgatlltGpsGsGKSTllDAi 42
                ++ + + GpsGsGKSTll  i
  CCG91659.1 32 ASLIAIFGPSGSGKSTLLRCI 52
                456789***********9665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.4e-05     0.044      18      41 ..      30      53 ..      21     134 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.4e-05
    ATPase_2 18 epneiyfiYGpegsGKtaLlkeii 41
                 p++ + i+Gp gsGK++Ll+ i+
  CCG91659.1 30 FPASLIAIFGPSGSGKSTLLRCIA 53
                5778899*************9886 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.8e-05     0.087      99     121 ..      32      54 ..      14      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.8e-05
                  TSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallp 121
                   +++++ G+SG GKStL+  +++
   CCG91659.1  32 ASLIAIFGPSGSGKSTLLRCIAG 54 
                  578899************99876 PP

>> HOK_GEF  Hok/gef family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00016      0.16      14      35 ..     344     365 ..     341     367 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
     HOK_GEF  14 LlftllvrkdLCElrirsGntE 35 
                 +l++l+++  L El+ir+G+ +
  CCG91659.1 344 VLTALISHNALFELKIREGDSV 365
                 6789***************975 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00014      0.14       1      19 [.      35      53 ..      35      56 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
                    EEEE-STTSSHHHHHHHHH CS
  Cytidylate_kin  1 iaiDGPagsGKssvarala 19
                    iai GP+gsGKs++ r +a
      CCG91659.1 35 IAIFGPSGSGKSTLLRCIA 53
                    89************99988 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00032      0.32       1      19 [.      34      52 ..      34     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00032
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                l+ + G++GsGKstl++ +
  CCG91659.1 34 LIAIFGPSGSGKSTLLRCI 52
                67789**********9865 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00032      0.32       2      21 ..      34      53 ..      33      55 .. 0.90
   2 ?   -1.1   0.1       1.6   1.6e+03      55      88 ..     133     168 ..     112     211 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00032
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                l+++ G++GsGK+tLl+ +a
  CCG91659.1 34 LIAIFGPSGSGKSTLLRCIA 53
                78999***********9887 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
                 CHHHCCCCTS--SSS-C..CHHHHCCSCCCEEEEEE CS
       NACHT  55 adllfsqlpepaapvse..vwavllelperlLlilD 88 
                 +++l+s +p+  +  ++  v   ++  +e  Ll+lD
  CCG91659.1 133 IEHLASRWPQTLSGGERrrVALARAIAREPKLLLLD 168
                 577777777776655552322222223333444444 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00049      0.49      26      43 ..      35      52 ..      16      54 .. 0.87
   2 ?   -1.1   0.0       1.7   1.7e+03     177     205 ..     176     198 ..     109     214 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00049
       DUF87 26 lAilgsTGsGKSntvavL 43
                +Ai+g +GsGKS++ + +
  CCG91659.1 35 IAIFGPSGSGKSTLLRCI 52
                7************99877 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.7
       DUF87 177 rkggsfsnsstdliallleklekegkiti 205
                 +k ++f      l +l++e+++++g++t+
  CCG91659.1 176 FKSKEF------LRQLIEEIASENGRLTV 198
                 233333......44445555555555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00023      0.23       2      21 ..      35      54 ..      34     127 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00023
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                +ai+G + +GKStL++ + g
  CCG91659.1 35 IAIFGPSGSGKSTLLRCIAG 54
                89*************99986 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00031      0.31       2      21 ..      35      59 ..      34      80 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00031
      AAA_28  2 ivitGgestGKTtlleaLa.....a 21
                i+i+G++++GK+tll+ +a     +
  CCG91659.1 35 IAIFGPSGSGKSTLLRCIAgldipD 59
                99*************9988443333 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00035      0.35       5      22 ..      35      52 ..      32      84 .. 0.79
   2 ?   -3.7   0.0       8.2   8.2e+03     124     134 ..     196     206 ..     179     210 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00035
      AAA_24  5 iliyGpsgiGKTtlakel 22
                i+i+Gpsg+GK+tl++ +
  CCG91659.1 35 IAIFGPSGSGKSTLLRCI 52
                89************9876 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.2
      AAA_24 124 nvifiahektr 134
                   ++i+hekt+
  CCG91659.1 196 LTVLISHEKTE 206
                 56889999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 2324.47
//
Query:       CCG91660.1  [L=225]
Description: ABC-type molybdate transport system, permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-21   76.5   9.0    2.8e-21   76.1   9.0    1.1  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   9.0   1.6e-25   2.8e-21       1     175 [.      24     209 ..      21     217 .. 0.86

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 1.6e-25
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf...........vilsilghlilpviillllsaapyvrlirraalrslpkdlvea 86 
                   gi+l++++ + +++ ++ l++ ++ ++l lP+ vl++ l+ +f            + ++l +++ +++++++++++p+++ + ++a++ +++ l+ea
    CCG91660.1  24 GIPLAYWLSFGKKRQWKILVDSMVSLPLVLPPTVLGFYLLILFgnsgigtvysrLFGKSLVFSFEGLLVASIIYSLPFMVQNLAGAFSLVDSKLIEA 120
                   678888888*******************************999***********88889999*********************************** PP

  BPD_transp_1  87 aralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis....nggvlalviavlllnlvadil 175
                   ++ +G s+w +f+kv++P++l  ++ g +l+f++ lg++ +++++g++ +  t+++++ l+ ++   +    n    ++++++ll++ ++ +l
    CCG91660.1 121 SLCCGESPWNTFFKVIFPLSLQGFLRGTVLSFTHTLGEFGIVLMVGGDIPGKTRTISIALYDQVEGLNyqgaN----TTALVLLLFSSFVLFL 209
                   **********************************************999866666666666666666644432....3333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1579.19
//
Query:       CCG91661.1  [L=261]
Description: ABC-type molybdate transport system, periplasmic component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-47  162.1   0.0    1.9e-47  162.0   0.0    1.0  1  SBP_bac_11      Bacterial extracellular solute-binding protei
    2.5e-09   37.5   0.7    3.2e-09   37.2   0.7    1.1  1  SBP_bac_1       Bacterial extracellular solute-binding protei
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.029   13.7   0.0    1.4  1  LysR_substrate  LysR substrate binding domain
      0.035   13.9   0.3       0.64    9.8   0.2    2.2  2  SBP_bac_8       Bacterial extracellular solute-binding protei


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.0   0.0   4.2e-51   1.9e-47       1     229 [.      34     259 ..      34     260 .. 0.96

  Alignments for each domain:
  == domain 1  score: 162.0 bits;  conditional E-value: 4.2e-51
                 .EEEE-SSTHHHHHHHHHHH.HHHH---EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGGGG-EEEEEEEEEEEESTT-TT---SHHH CS
  SBP_bac_11   1 ltvaaagslaaalrelaaaF.eahtgvkvevsaggsgklarqiadgarpDvwipassawlellaaaglvqaesavplassplviavpkgnpkkikgwad 98 
                 ltvaaa++l+++l e++  + +++++vkvev +g sgk+++qi++ga++D++++a+ +++ ll ++g+++ e++  +a  +lv+++++g     k+w++
  CCG91661.1  34 LTVAAAADLRFVLPEIIGPYqTRNPDVKVEVIYGASGKFYEQILRGAPFDIFLSADKEYPFLLYTKGYAA-EEPFQYAEGRLVLWMRRGLFGEGKDWKE 131
                 89******************6668**********************************************.*******************999999999 PP

                 HHH.SS-.-EEEE--T-TTTTHH.HHHHGGG--HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEHHHHH..HSTTSSEEEE--TTT--...EEE CS
  SBP_bac_11  99 Llk.pgl.klavadPttspsGlaalalleaagaqellkalekkvvklgessrqlltaveageadagivyeseakaaengdkleavylpeglnldpldyp 195
                 Ll  +++ k+a+a+P+++p+G+ a+++le+ag   l+++l +k v +ge++ q+++++e ++a++++++++ a+ ++++ ++ +v++p + +  ++ ++
  CCG91661.1 132 LLTnNKVsKIALASPQHAPYGKIAKTALENAG---LWEKLDSKFV-YGENVIQAFQFAEGKNAELAFIPLTIALSPKASNEGNYVEIPHSFYP-RILQY 225
                 88846889************************...**********.**********************************************6.77777 PP

                 EEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT- CS
  SBP_bac_11 196 aavlkkaakreaAraFlafLrspeaqailrkyGf 229
                  +++kk a+   A++F ++L+s+e q++l+kyGf
  CCG91661.1 226 GIIIKKLANLSIAKKFKEYLLSEESQKTLKKYGF 259
                 77888999*************************9 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.7     7e-13   3.2e-09      17     315 .]      41     252 ..      27     252 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 7e-13
                 H...........HHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE CS
   SBP_bac_1  17 a...........fekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds 104
                 +           ++ ++p++kVe++++ sg +++    +i  G+ p D++ +        a  +   p+  y+k y+a+++ ++a              
  CCG91661.1  41 DlrfvlpeiigpYQTRNPDVKVEVIYGASGKFYE----QILRGA-PFDIFLS--------A--DKEYPFLLYTKGYAAEEPFQYAEG------------ 112
                 3444444466665566******************....******.77*****........4..556666668899988886544444............ PP

                 EEESEEEEEEEEEEEETTTHH..CTTGGGSHBHHHHHHHHHHHHHHCTCT...HCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHHH CS
   SBP_bac_1 105 kvlyvPlyaargliYNkdlfe..kagldppwtWdelveaakklkekgkkp...iggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaat 198
                            +l+ +  lf   k        W+el+   k  k +  +p   ++g   ++a+ +a+++                              
  CCG91661.1 113 ---------RLVLWMRRGLFGegK-------DWKELLTNNKVSKIALASPqhaPYGKIAKTALENAGLWE----------------------------- 166
                 .........779*********444.......*******************55555555555555555554............................. PP

                 HHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCST CS
   SBP_bac_1 199 ylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgskn 297
                              +l  k ++++++ +a +  e  +a +a++ l+ al+ + ++++   +++ + ++                   + ++ +i k+ +n
  CCG91661.1 167 -------------KLDSKFVYGENVIQAFQFAEGKNAELAFIPLTIALSPKASNEGNYVEIPHSFYPR------------------ILQYGIIIKKLAN 234
                 .............9************************************999988888888888888..................99999******** PP

                 HHHHHHHHHHHTSHHHHH CS
   SBP_bac_1 298 peaAkkFldfllspeaqa 315
                    AkkF ++lls+e q+
  CCG91661.1 235 LSIAKKFKEYLLSEESQK 252
                 999************996 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.5e-06     0.029       6      54 ..      32      79 ..      28      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.5e-06
                    EEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTT CS
  LysR_substrate  6 grLrigapptlaryllppllarfraryPevelelvegdseelldllaeg 54
                     +L+++a  +l r +lp+++  ++ r+P+v++e+  g s  + +++++g
      CCG91661.1 32 STLTVAAAADL-RFVLPEIIGPYQTRNPDVKVEVIYGASGKFYEQILRG 79
                    68999999995.99*************************9999999988 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.029   1.3e+02       3      29 ..      50      77 ..      48     101 .. 0.81
   2 ?    9.8   0.2   0.00014      0.64     167     262 ..     147     260 ..      99     261 .] 0.59

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.029
                HHHHHHH-.TEEEEEEE--SSSHHHHHH CS
   SBP_bac_8  3 akefekkt.gvkvnvvtaasndleqklk 29
                +  ++ ++ +vkv+v++ as++  +++ 
  CCG91661.1 50 IGPYQTRNpDVKVEVIYGASGKFYEQIL 77
                5679999*9*********9988766655 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00014
                 HHHHTT-EE-S..--SSTTT..TTSBSEEEE-TTHHHHHH-TTTSEEEE--.........S--.........EEEEEEEEEEBTTS-HHHHHHHHHHHH CS
   SBP_bac_8 167 klkdngktydtgadavsefa..nGevaftingswdiaaaqkagkklgaivp.........kqg.........sfaggkglavpknaknedlaAldFlkw 245
                 +  ++gk+ +t  ++  ++   + +++++ n  ++++ a+ ++ +l++i++         ++g         ++   ++ ++ k+  n  + A++F ++
  CCG91661.1 147 QHAPYGKIAKTALENAGLWEklDSKFVYGENVIQAFQFAEGKNAELAFIPLtialspkasNEGnyveiphsfYPRILQYGIIIKKLANLSI-AKKFKEY 244
                 55566666655544445444224444444444444444444444444444355555566544455666665544444556799*******9.******* PP

                 HTTSHHHHHHHHHH--- CS
   SBP_bac_8 246 ltspenqaalaektgyi 262
                 l+s+e+q+ l +k+g+ 
  CCG91661.1 245 LLSEESQKTL-KKYGFY 260
                 *******955.445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 1946.06
//
Query:       CCG91662.1  [L=283]
Description: Protein fdhD homolog [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-70  238.1   0.0    1.2e-70  237.9   0.0    1.0  1  FdhD-NarQ  FdhD/NarQ family


Domain annotation for each model (and alignments):
>> FdhD-NarQ  FdhD/NarQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.9   0.0   6.5e-75   1.2e-70       1     236 [.      31     282 ..      31     283 .] 0.89

  Alignments for each domain:
  == domain 1  score: 237.9 bits;  conditional E-value: 6.5e-75
                 E--EEEEEEETT....EEEEEEEE-SSSHHHHHHHHHHHCTS--SGGGEEEEEEETTTEE..........EE-S.........---------------. CS
   FdhD-NarQ   1 veEepltivvng....relatlmatpadleelalGfllsegliesaediesievdedeas..........vavatrakaedkeerrtakrvvtsgCglc 85 
                 ++Eepl+i++      ++la++m+tp+ + +l lGf++seg+++  e ++si+++ +++           v++++ + +   + +r++  +++s+Cg+c
  CCG91662.1  31 ITEEPLEIRLRAgseeKTLAVTMRTPGADFDLSLGFIFSEGIVTGLESVHSISYCIRKEIaeaqryntllVTLNQPHLPAMGQFERHF--MTSSACGIC 127
                 579*****9965555599*************************************766556677788877777777744444578888..9******** PP

                 ---...--...H------....-----EEGGGHHHHHHHHHTS-SHHHHHS--EEEEEEE.TTEEEEEEEESSHHHHHHHHHHHHHT.TSS.-SSSEEE CS
   FdhD-NarQ  86 gkesleel...letlelp....esdlklsaeallrlmdalrekqelfketggvHaaalfdadgellavreDvGRHnAlDkviGaallegld.lsdkilv 176
                 g++ ++ l        ++    +++ k+  e l++l+++++++q+lfk+tgg+Haaalfd +g+ll + eDvGRHnA+Dk+iG+al+egl  +++ i++
  CCG91662.1 128 GRTVVDLLdkkG----NVsassQTNWKIPVEILYKLPEEFQTRQNLFKTTGGLHAAALFDIEGNLLQIKEDVGRHNAMDKLIGHALREGLVpMDKYIVM 222
                 ***995554331....333456779*****************************************************************9788889** PP

                 ESS-B-HHHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEETTEEEEEE-GGGE CS
   FdhD-NarQ 177 vsgRlssemvqKaaragipvlvsvsaptslavelAeeagltlvgfvrgkrfnvYtgaeRi 236
                 vsgR+s+e++qKa +ag ++ +svsap+slav +A+++ +tl+gf+r+krfnvY+g eRi
  CCG91662.1 223 VSGRASYELLQKAYMAGLKFFCSVSAPSSLAVLVAKKFSMTLIGFLRKKRFNVYSGIERI 282
                 ***********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2225.48
//
Query:       CCG91663.1  [L=516]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.019   15.2   4.8        3.2    8.1   0.0    3.1  3  ABC_tran_CTD  ABC transporter C-terminal domain
      0.049   14.2   0.7      0.096   13.2   0.1    1.8  2  TRAUB         Apoptosis-antagonizing transcription factor, C-
        2.4    8.3   4.7        7.4    6.8   0.6    2.3  2  Fib_alpha     Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.2    0.0013       7.9       1      29 [.      41      69 ..      41      83 .. 0.88
   2 ?    8.1   0.0   0.00054       3.2      36      64 ..      92     120 ..      85     124 .. 0.81
   3 ?    0.6   0.2      0.12     7e+02       4      55 ..     162     181 ..     135     200 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0013
  ABC_tran_CTD  1 klsykeqreleeleaeIeaLEeeiaelea 29
                  k+ y   +el++l   I+++E+e+++ ++
    CCG91663.1 41 KFRYELGKELDNLSPLIQQIETEKKQFDT 69
                  6789999*****************99876 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00054
  ABC_tran_CTD  36 lysdpeklaelsaeleeleaeLeelyerW 64 
                   l+  ++ + elsa+++++++e+  l ++W
    CCG91663.1  92 LFRYQNLVDELSAKIAKINTEISSLVAKW 120
                   555557799999**********9999999 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.12
  ABC_tran_CTD   4 ykeqreleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleelea 55 
                   y+ ++                                e la++ +++e l+ 
    CCG91663.1 162 YQRRN--------------------------------ELLAAIAQQKESLKR 181
                   22222................................444444444444433 PP

>> TRAUB  Apoptosis-antagonizing transcription factor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.6e-05     0.096      40      83 ..      30      73 ..      25      75 .. 0.93
   2 ?   -3.0   0.0       1.9   1.1e+04       9      42 ..     173     183 ..     159     220 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
       TRAUB 40 kkvDtkaSKGRklrYevheklqNFmapeergkweeeqidelfas 83
                ++ D+k +  Rk rYe  ++l N  + +++ ++e++q d l+++
  CCG91663.1 30 RQSDQKQTEIRKFRYELGKELDNLSPLIQQIETEKKQFDTLYEN 73
                678**************************************986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.9
       TRAUB   9 vekksaessaaasdsrqllalqklrkkkkkkkkv 42 
                  ++k++ +                        + 
  CCG91663.1 173 AQQKESLKR-----------------------QE 183
                 333333222.......................22 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.6    0.0012       7.4      24      99 ..      37     115 ..      34     127 .. 0.73
   2 ?    3.6   1.8     0.011        68      40     131 ..      88     178 ..      85     182 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0012
                 HCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHCCCHHHHHHHC CS
   Fib_alpha  24 dlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnv...ikksskeleeeilrlketida 99 
                 + + k + ++ k+l++l   +++i+ ++k+ ++l +++  s  ++q   +  ++    ++++ +el  +i++++ +i++
  CCG91663.1  37 TEIRKFRYELGKELDNLSPLIQQIETEKKQFDTLYENTLRSSLPEQVPISLMETSlfrYQNLVDELSAKIAKINTEISS 115
                 567778888899999****************999999888888888877765554011555555666666666665554 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.011
                 CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  40 leneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqkerk 131
                 +e +l +++n   e +  + +i++ + +  ++ +  ++    +   l ++ + ++++id+  s ++ Lq+ ++   q+ ++L  +i+q++++
  CCG91663.1  88 METSLFRYQNLVDELSAKIAKINTEISSLVAKWN-LSSQSDLFDPVLLHQWTAINAKIDTFSSDLHLLQTDVQLSYQRRNELLAAIAQQKES 178
                 6667777777777777777777766665555554.455566666667778999999999999999999999999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1159  (0.0646439); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 3502.13
//
Query:       CCG91664.1  [L=140]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.02   15.0  11.2      0.025   14.7  11.2    1.1  1  Uds1          Up-regulated During Septation
       0.65   10.6   4.7       0.59   10.7   3.4    1.5  2  T5orf172      T5orf172 domain
          2    8.2   9.4        2.8    7.8   9.4    1.4  1  Endonuc_Holl  Endonuclease related to archaeal Holliday junct
        2.5    7.6   7.6        2.3    7.6   4.9    2.1  2  DUF3087       Protein of unknown function (DUF3087)
        7.7    5.4  12.4        2.5    7.0   9.9    1.5  1  DUF3987       Protein of unknown function (DUF3987)


Domain annotation for each model (and alignments):
>> Uds1  Up-regulated During Septation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7  11.2     7e-06     0.025       7     107 ..      38     128 ..      36     140 .] 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7e-06
        Uds1   7 tAlvdsqefeiLsleeVeelkkelkaLeerlealrkkLaletklrdaarsLsrlyssskksakssaarsnskssreslakaeeelaeserkvdelasel 105
                 +A + ++ f++ +   V++lkk+++++e+  +  ++   + ++ r+aa +L++ y +++++          k+ ++ +++a+e+l+++e+ + + a ++
  CCG91664.1  38 NANTNASTFNTSKDRKVADLKKKHSRIEKIFSDWQQA--VAKQNRKAAAALHQEYLREQQD--------FLKQWNQWEKEAQEQLKKAEKTIGKEAGKI 126
                 5788999****************************99..89999***********777666........334444567777777777777776665555 PP

        Uds1 106 ek 107
                 +k
  CCG91664.1 127 QK 128
                 54 PP

>> T5orf172  T5orf172 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.4   0.00017      0.59      27     100 ..      30     103 ..      24     109 .. 0.77
   2 ?   -0.9   0.1      0.69   2.5e+03      62      76 ..     105     119 ..      99     137 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
    T5orf172  27 qrRlkelskyptkppselevvaekevrkvpnahrvErlihkeLadrryrvkcdcgk....ehrEwFevsleevdevvr 100
                 q R  e   +++++ s++     ++ rkv + ++  + i k ++d+++ v+++++k     h+E+ + + + ++++ +
  CCG91664.1  30 QNRQHENA-NANTNASTFNT---SKDRKVADLKKKHSRIEKIFSDWQQAVAKQNRKaaaaLHQEYLREQQDFLKQWNQ 103
                 55555544.45555555555...6679999********************9999999**********99666655543 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.69
    T5orf172  62 ErlihkeLadrryrv 76 
                 E++++++L++++  +
  CCG91664.1 105 EKEAQEQLKKAEKTI 119
                 455555555533333 PP

>> Endonuc_Holl  Endonuclease related to archaeal Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   9.4   0.00077       2.8      13      85 ..      54     127 ..      29     138 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00077
  Endonuc_Holl  13 iskiqkklekkarelfeewkkeeaeeleklk.eaeallkkeaevkleewkkkeekeiRedaikksksvi...lgkvt 85 
                   +  ++kk +++ +++f++w+++ a++ +k    ++++  +e++  l++w+++e++   ++ +kk++++i   +gk++
    CCG91664.1  54 VADLKKK-HSRIEKIFSDWQQAVAKQNRKAAaALHQEYLREQQDFLKQWNQWEKEA--QEQLKKAEKTIgkeAGKIQ 127
                   4455544.567789*********99999888455899999999999***9987664..5667777776633355655 PP

>> DUF3087  Protein of unknown function (DUF3087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.14   4.9e+02      25      47 ..       5      27 ..       1      47 [. 0.74
   2 ?    7.6   4.9   0.00065       2.3      82     133 ..      54     105 ..      53     136 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.14
     DUF3087 25 llavlsllfstllialfgeeevs 47
                ++ ++ llfs+l+ + fg++ ++
  CCG91664.1  5 FFSLSLLLFSSLCFETFGKNPTD 27
                45556678999999999987766 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00065
     DUF3087  82 vWrLKqllnkiyrklkkvkaaakegdenAlkilrFyyqglkqlyqLddNtlt 133
                 v +LK+ + +i + ++  ++a+++++++A  +l+  y+  +q +    N+ +
  CCG91664.1  54 VADLKKKHSRIEKIFSDWQQAVAKQNRKAAAALHQEYLREQQDFLKQWNQWE 105
                 568**********************************999998766666554 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   9.9   0.00069       2.5      52     112 ..      75     134 ..      69     140 .] 0.69

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00069
     DUF3987  52 vdklvlrpleeieaelreeyeeelkeyeaekkaweaelealekkaakakeakaeealaele 112
                 v+k  ++++ ++++e+ +e ++ lk++++ +k+++++l+++ek + k+ ++k +++++e+ 
  CCG91664.1  75 VAKQNRKAAAALHQEYLREQQDFLKQWNQWEKEAQEQLKKAEKTIGKE-AGKIQKDMEEAS 134
                 555567777788888888888888888888888888888888888887.455555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2970  (0.165653); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 908.33
//
Query:       CCG91665.1  [L=157]
Description: Peroxiredoxin [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-28   97.3   0.0    7.3e-28   97.0   0.0    1.1  1  AhpC-TSA    AhpC/TSA family
    2.9e-22   79.0   0.0    3.5e-22   78.7   0.0    1.0  1  Redoxin     Redoxin
    1.2e-07   31.9   0.0    1.7e-07   31.4   0.0    1.2  1  AhpC-TSA_2  AhpC/TSA antioxidant enzyme


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.0   1.2e-31   7.3e-28       1     123 [.      10     131 ..      10     132 .. 0.93

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 1.2e-31
                 TTSB----EEESTTCEEEECHHH.TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHHHHT CS
    AhpC-TSA   1 vgdkapdfelknadgetvslsdy.kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkvakay 98 
                 +g  +pd+ + ++dg+++ l+ + k+   +++fypk+++p+C +e+++l+++y+ + ++g++++g+s+d++e++k+f+ek+ l+fpll+D+egk+++++
  CCG91665.1  10 IGADVPDVIAVDQDGNSIPLQSIaKKGTFLFYFYPKADTPGCIKEACNLRDNYKMLIDHGIKIFGISMDTKEAQKNFKEKYHLPFPLLADPEGKLVEKF 108
                 7999*******************644488889******************************************************************* PP

                 T-EETTTTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  99 gvlkeekglalratfvidkegkiry 123
                 gv k++ g a r++f+   +gki++
  CCG91665.1 109 GVTKKN-GHASRQSFLAR-NGKIVW 131
                 ***776.99999999876.577765 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   5.8e-26   3.5e-22       3     141 ..      11     144 ..       9     150 .. 0.89

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 5.8e-26
                 TSBB---ECCEETTCEEEEEHHH.HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHHTT-TSEEEE-TTSHHHHH CS
     Redoxin   3 gdkaPdftlplaatdgnsvslse.fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgkeglkfpvlsDgsaaftka 100
                 g+ +Pd+    +++dgns+ l++  k+++ + +f+p a++P C +e++ l++ ++ l ++g++++++++d+ + +k+f +k++l+fp+l+D++++++++
  CCG91665.1  11 GADVPDVIA--VDQDGNSIPLQSiAKKGTFLFYFYPKADTPGCIKEACNLRDNYKMLIDHGIKIFGISMDTKEAQKNFKEKYHLPFPLLADPEGKLVEK 107
                 7789**996..66**********999999999****************999999999****************************************** PP

                 TT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCHT.STT CS
     Redoxin 101 lGlrleedaseglrtpryavidedgkvvylevepepet.ees 141
                 +G++    +++g  + r   + ++gk+v++++ + pet   +
  CCG91665.1 108 FGVT----KKNG-HASRQSFLARNGKIVWRNLKVKPEThAQE 144
                 **66....4455.677888889************99664444 PP

>> AhpC-TSA_2  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   2.8e-11   1.7e-07       2      80 ..      58     137 ..      57     148 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 2.8e-11
  AhpC-TSA_2   2 Lsrdkpeldaagvklvaigigdps.akkFvkltgfpfelyvDpsaklyqalglkrglklklaplslqkalenllkrlkei 80 
                 L++  + l ++g+k+++i+ ++ +  k+F +  + pf+l++Dp++kl +++g++++    + + +l++  + ++++lk +
  CCG91665.1  58 LRDNYKMLIDHGIKIFGISMDTKEaQKNFKEKYHLPFPLLADPEGKLVEKFGVTKKNGHASRQSFLARNGKIVWRNLKVK 137
                 7777888999*************759999999***********************9998888888888877777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1242.89
//
Query:       CCG91666.1  [L=141]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-07   30.4  27.1     0.0029   17.2   0.4    3.2  3  DUF3096   Protein of unknown function (DUF3096)
  ------ inclusion threshold ------
      0.024   14.9   4.9      0.024   14.9   4.9    4.1  4  DUF308    Short repeat of unknown function (DUF308)


Domain annotation for each model (and alignments):
>> DUF3096  Protein of unknown function (DUF3096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.4   3.3e-07    0.0029       1      35 [.      11      45 ..      11      47 .. 0.94
   2 !   16.0   4.5   7.9e-07    0.0071       6      33 ..      58      85 ..      54      89 .. 0.91
   3 !    7.9   8.1   0.00026       2.4       8      35 ..     102     129 ..      98     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.3e-07
     DUF3096  1 PlvALiaGiLILimPRLLNyiVAiYLIviGllGLl 35
                +l++L+ G    + P +L +++A YL++  + G +
  CCG91666.1 11 ALLSLLFGSILFVKPHFLYFLIASYLLLFSVFGFF 45
                699*****9999********************987 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 7.9e-07
     DUF3096  6 iaGiLILimPRLLNyiVAiYLIviGllG 33
                ++G+LI ++P L  y+VA+  ++ Gll 
  CCG91666.1 58 LCGLLIFLFPNLIAYLVALHFVLFGLLT 85
                79***********************986 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.00026
     DUF3096   8 GiLILimPRLLNyiVAiYLIviGllGLl 35 
                  iL  ++P    y++  YLIv+G+  Ll
  CCG91666.1 102 AILLFLFPNAIAYLIGSYLIVNGIGALL 129
                 4888899****************97776 PP

>> DUF308  Short repeat of unknown function (DUF308)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.9      0.02   1.8e+02      53      72 ..       6      22 ..       2      23 .. 0.77
   2 ?   -5.7  13.5         2   1.8e+04       2      44 ..      10      46 ..       9      66 .. 0.63
   3 ?   -5.8  14.9         2   1.8e+04       7      41 ..      57      87 ..      50     108 .. 0.70
   4 ?   14.9   4.9   2.7e-06     0.024       7      48 ..      99     136 ..      93     140 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.02
      DUF308 53 grwlglllGilyliaGllll 72
                ++w   + ++l+l++G +l+
  CCG91666.1  6 KFW---IQALLSLLFGSILF 22
                577...88999999999987 PP

  == domain 2  score: -5.7 bits;  conditional E-value: 2
      DUF308  2 lGillivlGilalllPvaallalvllfGilllvsGivqiiaaf 44
                 ++l++++G ++++ P +      +l++ +ll++++++++  f
  CCG91666.1 10 QALLSLLFGSILFVKPHFLY----FLIASYLLLFSVFGFF--F 46
                57889999999999997654....6667777777777774..3 PP

  == domain 3  score: -5.8 bits;  conditional E-value: 2
      DUF308  7 ivlGilalllPvaallalvllfGilllvsGivqii 41
                +++G+l++l+P      +++l+++ ++++G++ ++
  CCG91666.1 57 ALCGLLIFLFPN----LIAYLVALHFVLFGLLTFL 87
                567777777776....5889999999999999986 PP

  == domain 4  score: 14.9 bits;  conditional E-value: 2.7e-06
      DUF308   7 ivlGilalllPvaallalvllfGilllvsGivqiiaafaark 48 
                 i+++il++l+      a+++l+G +l+v Gi+ +++ f ++k
  CCG91666.1  99 IAIAILLFLF----PNAIAYLIGSYLIVNGIGALLSLFMQHK 136
                 4445555555....56899****************9996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1025.74
//
Query:       CCG91667.1  [L=216]
Description: Cytochrome c family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-28   99.6   0.0    2.4e-28   99.4   0.0    1.0  1  DUF3365    Protein of unknown function (DUF3365)
  ------ inclusion threshold ------
      0.041   13.9   0.0       0.11   12.5   0.0    1.7  1  ADD_DNMT3  Cysteine rich ADD domain in DNMT3


Domain annotation for each model (and alignments):
>> DUF3365  Protein of unknown function (DUF3365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.0   2.7e-32   2.4e-28       2     156 ..      16     210 ..      15     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 2.7e-32
                 .XXXXXXXXXXXXXXXXXX--HHH.HHHHHHHHHHHHHHHHHHHTTS-S.................--GGGGS--SHHHHHHH..HT-EEEEE-SS-SS CS
     DUF3365   2 lvvllglllalslrsqkrqaeeea.lekarllaeqleavreyvakslkpti...............vpayaareiaeefsekr..kgysyketslnprn 82 
                 ++++l  ++a+ ++sq++ + + a  ek +++ + +  + + +++slk+ i               +++  a  ++++++ek+  +   +k+ts++ rn
  CCG91667.1  16 CFFFLYFSFAFICHSQQEPVTSIAsMEKNQTIEKIAAPIAQELQESLKN-IlttklkevgpietlkYCNLQALALTDQVKEKHgaRITLLKRTSDKIRN 113
                 5889999999999999998555550566666666666677778888885.23444556666777789999999999******98877899********* PP

                 GGGS--SHHHHHHHHHEE.....................TEEEEEEEEE--TTTHHHHS-GGG--H....HHHHH-T.-------TT-EEEEEEEEE CS
     DUF3365  83 prnkpdefEkealeefkk..........e........gervfryarplrveesClkCHgdpedapk....slieryg.kdafgwkvGdvrGaisisi 156
                 p nkpd  Ekeale f++          +         ++ +ry++pl + + Cl+CHg+ +++++    +l++ry+ ++a+g+k+Gd+rG i+++i
  CCG91667.1 114 PLNKPDYPEKEALEIFLEaqrrhepfpsSyvqkveqnWNTKYRYYKPLFIGNICLNCHGSLSQMSPslkeELQKRYPlDEATGYKLGDFRGLITVEI 210
                 ****************554455555544044444444559*********************8888879999************************98 PP

>> ADD_DNMT3  Cysteine rich ADD domain in DNMT3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.2e-05      0.11      30      48 ..     157     175 ..     152     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.2e-05
   ADD_DNMT3  30 tqHPLFeGglClkCkdnfl 48 
                    PLF G +Cl+C  ++ 
  CCG91667.1 157 YYKPLFIGNICLNCHGSLS 175
                 567***********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1419.02
//
Query:       CCG91668.1  [L=304]
Description: Alpha/beta superfamily hydrolase (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-16   59.1   0.0    4.6e-11   42.8   0.0    2.2  2  Abhydrolase_1  alpha/beta hydrolase fold
    5.2e-12   45.5   0.0    1.3e-07   31.2   0.0    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
    1.2e-11   45.7   0.0    4.6e-10   40.5   0.0    2.2  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0002   20.9   0.0    0.00034   20.2   0.0    1.3  1  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.033   13.8   0.0        7.1    6.1   0.0    2.1  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
        0.1   11.2   0.0       0.14   10.8   0.0    1.1  1  PhoPQ_related  PhoPQ-activated pathogenicity-related protein


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   1.5e-14   4.6e-11       2     108 ..      84     188 ..      83     208 .. 0.86
   2 !   14.6   0.0   6.3e-06     0.019     206     254 ..     221     280 ..     194     283 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 1.5e-14
                    EEEEE-STTTCGGG...GTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH...HH..HHHCTTSSEEEEEETHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdv...waerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddld...ri..ldalgddkltlvGhSmGGmiala 89 
                    +++++hGl+++ +    +++  l+ +L   +f v+++DlrG+g+S+p   +         + +++d   +i  l++ g  +++l+G S+G  +al 
     CCG91668.1  84 PIIVIHGLGANKEFmmsYIQ--LGHTL---EFPVLAIDLRGHGESDPTVVT-------LGLKESMDiesWIeeLEKKGYTSPILWGTSLGAVTALL 167
                    79********9988666677..77777...79*****************74.......55888888889*************************** PP

                    HHHHHGGGEEEEEEESE..CS CS
  Abhydrolase_1  90 yaaeyperVkalvllga..id 108
                    + ++ + ++++++++++    
     CCG91668.1 168 AGSKLNGKISSIIADAPfdTL 188
                    *****************5544 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 6.3e-06
                    C..........THHHHSEEEEEEETTCSSSCH.HHHHHHHHCHTSEEEEEEETCSSSHHH CS
  Abhydrolase_1 206 e..........lknvlaptlvisgtsDplvpp.kaledlaqllpkkrlvvisdagHlafl 254
                    +           kn+ +p l++++++D  +p+  +++ ++++ + k+++vi++a H + l
     CCG91668.1 221 IdahkidcveaAKNIDCPLLILAAEQDVRMPInMVQRVFDAAKNPKFWWVIPNANHELRL 280
                    14445566666799******************88888888885556**********8755 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   4.3e-11   1.3e-07       6     114 ..      84     189 ..      80     226 .. 0.82
   2 !   12.4   0.0   2.3e-05     0.069     182     234 ..     227     278 ..     219     284 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 4.3e-11
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvag 103
                   ++++HGl+   + +   ++     +f v+a+D rGhG+s++  + +   +    D+++ +e+++++  ++p +l+G S+G+++all++ +   k++ 
   CCG91668.1  84 PIIVIHGLGANKEFMMSYIQLGHTLEFPVLAIDLRGHGESDPTVVTLGLKE--SMDIESWIEELEKKGYTSP-ILWGTSLGAVTALLAGSKLNGKISS 178
                  58999999999888888888888889**************87777544444..35**********8887777.9*****************9999*** PP

  Hydrolase_4 104 lilsaPalkik 114
                  +i  aP+  + 
   CCG91668.1 179 IIADAPFDTLY 189
                  ***99985554 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.3e-05
  Hydrolase_4 182 rleeraakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHel 234
                  +++e a++i+ Pll+l +e+D  ++ +  ++++++++   k   ++p++ Hel
   CCG91668.1 227 DCVEAAKNIDCPLLILAAEQDVRMPINMVQRVFDAAKN-PKFWWVIPNANHEL 278
                  68999********************************6.9999********98 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   1.5e-13   4.6e-10       1     148 [.      85     217 ..      85     290 .. 0.60

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 1.5e-13
                    EEEE--GC.....GC.HHHHHHHHCCT..CEEEEE--TTSTS-GGCS..--HHHCHHHHHHHCCTT...TTSEEEEEETCHHHHHHHHHHCC.... CS
  Abhydrolase_6   1 vlllHGagssassWl.vapLaallaag..vhvlapDlpGhGrsdppp..ldledladlaalldelaa.gggpvvlvGHSlGGalalaaapla..lv 88 
                    ++++HG+g++++    + +L    ++   + vla+Dl+GhG+sdp    l+l +  d++  ++el + g+  ++l+G SlG++ al+a++ +   +
     CCG91668.1  85 IIVIHGLGANKEFMMsYIQL----GHTleFPVLAIDLRGHGESDPTVvtLGLKESMDIESWIEELEKkGYTSPILWGTSLGAVTALLAGSKLngKI 176
                    789*****998888534455....33357788*********66555522444557999999999988899999**************666668766 PP

                    EEEEES-...----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHHCCCCHCHCC CS
  Abhydrolase_6  89 vgvlldppp.talpagllaaalelllallallrllawlsreplprlfladedadaawrarl 148
                    ++++ d+p  t + a+  +a + + l  ++  +   w+                       
     CCG91668.1 177 SSIIADAPFdTLYNALITHAKVLFRLSEYPMVPIVSWHL--------------------KR 217
                    667777733222222223333333333333333344442....................22 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.1e-07   0.00034      14     188 ..     109     278 ..      96     296 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.1e-07
                   T-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTS CS
  Peptidase_S9  14 GyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdl 110
                    + v+++++rG g+   +        lg +e  D+  ++e+l k+gy+++   +++G+S G ++++ a  + + + + ++a +p+ d l+  + t++
    CCG91668.1 109 EFPVLAIDLRGHGESDPTVV-----TLGLKESMDIESWIEELEKKGYTSP---ILWGTSLGAVTALLAGSKLNGKISSIIADAPF-DTLYNALITHA 196
                   56666666666665544443.....37778889***************77...8******************************8.66666666666 PP

                   ...THH.HCCCC--TTTCHHHHHHHHHH-CGGG--....---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SST CS
  Peptidase_S9 111 ...lte.eymewgnpeeneegykelspyspldnvk....aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgv 188
                      +   ey   +   +  + +++   +++ d v+    +++plL++ +++D r+p++   ++++a ++   +  + + p+++H +
    CCG91668.1 197 kvlFRLsEYPMVPIVSWHLK-RSYGIDAHKIDCVEaaknIDCPLLILAAEQDVRMPINMVQRVFDAAKN---PKFWWVIPNANHEL 278
                   67877778888887766433.334444444444444447****************99988888887654...45666777777754 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0024       7.1      60     143 ..     112     194 ..     110     208 .. 0.81
   2 ?    5.6   0.0    0.0035        10     209     267 ..     217     276 ..     201     277 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0024
                    EEEEE-TTSTTS-S---TTTTTHHHHHHHHHHHHHHCTTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEECE-S-TCCC.CS CS
  Peptidase_S15  60 vVvqdvrGtggSeGeftvgdsdeaedgadvidWlakqpwsnGkVgmtGiSYlGttqllaaatgvpalkaivpeaaisdlydd.yy 143
                    v+  d rG+g+S+  +++ + +e  d  + i+ l k+ +++     +G+S +++t+lla ++   ++  i++ a+   ly+  + 
     CCG91668.1 112 VLAIDLRGHGESDPTVVTLGLKESMDIESWIEELEKKGYTSP--ILWGTSLGAVTALLAGSKLNGKISSIIADAPFDTLYNAlIT 194
                    667899999999999999999999998888888877744443..479****************************9999996444 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0035
                    -SSSHHHHTT-HHHHHCT--S-EEEEEECCSSTTC.CHHHHHHHHHCCTT-EEEEECECT CS
  Peptidase_S15 209 gdydafWkdrnlsedadkvkapvllvgGwnDwnvk.ngaiklyealkapgvklilgpwtH 267
                     +y    +++++ e+a+++++p+l++ + +D  +  n + ++++a+k+p+   ++ +++H
     CCG91668.1 217 RSYGIDAHKIDCVEAAKNIDCPLLILAAEQDVRMPiNMVQRVFDAAKNPKFWWVIPNANH 276
                    55666778999999*****************87778999999999999987888877777 PP

>> PhoPQ_related  PhoPQ-activated pathogenicity-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.6e-05      0.14     252     318 ..     227     295 ..     201     303 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.6e-05
  PhoPQ_related 252 DplsYlerltipkyiinasgDdffvpdstkfyfekLkgekalrivPnssHglsn..kevveslvafvkl 318
                    D ++  ++++ p +i++a +D    ++  +  f++ k +k   ++Pn++H+l+   ++ +e +++f+ +
     CCG91668.1 227 DCVEAAKNIDCPLLILAAEQDVRMPINMVQRVFDAAKNPKFWWVIPNANHELRLfnDDFKEVITKFLYR 295
                    66677789999***************************************9986647777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 1964.60
//
Query:       CCG91669.1  [L=406]
Description: Molybdopterin biosynthesis enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-35  120.5   0.0    7.2e-35  120.1   0.0    1.2  1  MoeA_N         MoeA N-terminal region (domain I and II)
    2.2e-23   82.5   0.0    4.1e-23   81.6   0.0    1.4  1  MoCF_biosynth  Probable molybdopterin binding domain
    2.9e-05   24.2   0.0    5.9e-05   23.2   0.0    1.6  1  MoeA_C         MoeA C-terminal region (domain IV)


Domain annotation for each model (and alignments):
>> MoeA_N  MoeA N-terminal region (domain I and II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   0.0   1.2e-38   7.2e-35       2     157 .]      10     171 ..       9     171 .. 0.89

  Alignments for each domain:
  == domain 1  score: 120.1 bits;  conditional E-value: 1.2e-38
                 -HHHHHHHHHHH-.HH-EEE.EEGGCG-TT-BBSS-EE-SS-BSSS-EESSSEEEEEEBTTB--................-S---TT-.EEEE-TTSB- CS
      MoeA_N   2 sveealaiilaal.eleeee.vplaaealgrvlaedvvApedvPpfdnSamDGYAvraeagsgaseeep.....saageeperllpgg.avrimTGapl 92 
                 ++++al+ii++++ e++  + ++l +e+l+ ++aed+ +p+++Ppfd S+mDGYA+++ea  + +e+e      + ag +  +  +++ +v+++TGa++
  CCG91669.1  10 PIAQALEIIEKTInEIKGDKlLSL-EESLNSITAEDIFSPIAFPPFDISMMDGYAFCSEALLENKEKEFltaaeVYAGMPILEDFHPNqCVKVATGAVV 107
                 7899*********99999999***.99*********************************99998877799999556665555555555********** PP

                 -TT--EEEEGGGE..E....EETTES--STTTTEE-TTSSB-TTSEEE-TTBB--CCCHHHHHHCT CS
      MoeA_N  93 PegadaVvpvEdte.eeeaketvevkavkpgenvrraGedikaGevllragtrltpaeigllasvG 157
                 P+ +d Vv +E+++ e    +++ + + k+gen+r+aG++ik+Ge+l+++g +++p++i lla++G
  CCG91669.1 108 PKPFDLVVVQEEIHaE--NGRIKIKGSYKKGENIRKAGDEIKKGELLFHKGIKVDPRTINLLATLG 171
                 ************9643..4454555999***********************************998 PP

>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   6.8e-27   4.1e-23       3     142 ..     186     320 ..     184     322 .. 0.88

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 6.8e-27
                    EEE-HHHH.......TTSSGBHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHH..HHHHHTSSEEEEESS-SSSTT--HHHHHHHHHSEE-HHH CS
  MoCF_biosynth   3 itvGdell.......sgkieDtngpllaellkelgvevskytvvpDdeeeikeal..laaleeadviittGGtGptpdDvtpealaklfekelegf 89 
                    +++G+el         g+ +D+n  +l+++lkelgvev+   +++Dd ee+++++  ++ +++ ++i++tGG++++++D++ + +   ++      
     CCG91669.1 186 LSTGTELKtvgatleMGQLYDSNRIFLSNALKELGVEVIGGNIIADDMEELEKEMdkAKRCNA-NLILSTGGLSVGEKDFVARFIDTQCK------ 274
                    566666666666666****************************************75555455.****************9999998888...... PP

                    HHHHHHHHHHHCCTTSHGGGGGGE.EETTEEEEE-SSHHHHHHHHHHHHHGGH CS
  MoCF_biosynth  90 eeafrrvslkpgkpvgvapgailsravgktiigLPGspkavkealeeillpal 142
                     + f++++ kpg+p+++a +   ++    ++i+LPG+p av +++ e++++a+
     CCG91669.1 275 -VYFKKIAIKPGRPFSFASF---HG---IPFIALPGNPAAVVVCFYELVRKAV 320
                    .8******************...33...37******************97765 PP

>> MoeA_C  MoeA C-terminal region (domain IV)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   9.9e-09   5.9e-05       1      69 [.     335     403 ..     335     406 .] 0.92

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 9.9e-09
                 EEEESS-EE--SSS-EEEEEEEES-S-EEEEEE-S---TT-GGGCTT--EEEEE-TT--EE-TT-EEEE CS
      MoeA_C   1 karlaedlksdpgrreflRvilteedgeyvaeptgkqgSglLsslaeAnglivipegtegleaGeeVev 69 
                 +a la d+++++gr+e++ ++ +++ g+++++p++ ++ + + s  +A+ li + ++   + + + V+ 
  CCG91669.1 335 QAHLAMDVAKKQGRAEYYFAKEEDCRGKIMVHPVSLTDPSGVFSATKADVLICLAQDLSLVPKNTLVDC 403
                 578999*************************************************99988888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3064.10
//
Query:       CCG91670.1  [L=176]
Description: Molybdopterin-guanine dinucleotide biosynthesis protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-34  116.5   0.0      9e-34  116.2   0.0    1.1  1  MobB          Molybdopterin guanine dinucleotide synthesis pr
    0.00062   19.8   0.6     0.0011   19.0   0.6    1.4  1  CbiA          CobQ/CobB/MinD/ParA nucleotide binding domain
    0.00075   20.0   0.0    0.00097   19.7   0.0    1.3  1  ABC_tran      ABC transporter
     0.0014   18.6   0.3     0.0024   17.8   0.3    1.3  1  NTPase_1      NTPase
     0.0015   18.2   0.7     0.0027   17.4   0.7    1.3  1  SRP54         SRP54-type protein, GTPase domain
     0.0017   17.4   0.3     0.0027   16.7   0.3    1.2  1  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
     0.0027   17.7   0.4     0.0042   17.0   0.4    1.3  1  NACHT         NACHT domain
     0.0039   16.4   0.0     0.0047   16.1   0.0    1.1  1  LpxK          Tetraacyldisaccharide-1-P 4'-kinase
     0.0059   17.0   0.1      0.027   14.8   0.2    1.9  2  RNA_helicase  RNA helicase
     0.0063   16.3   0.0     0.0091   15.8   0.0    1.2  1  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
  ------ inclusion threshold ------
      0.015   14.5   0.2       0.02   14.1   0.2    1.2  1  NB-ARC        NB-ARC domain
       0.02   14.8   0.2      0.044   13.7   0.2    1.5  2  RsgA_GTPase   RsgA GTPase
      0.024   14.4   0.3      0.036   13.8   0.3    1.2  1  AAA_30        AAA domain
      0.028   14.0   0.5      0.041   13.5   0.1    1.4  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.033   13.9   0.1      0.067   12.9   0.1    1.5  1  AAA_29        P-loop containing region of AAA domain
      0.036   14.0   0.1      0.036   14.0   0.1    1.4  1  ATPase_2      ATPase domain predominantly from Archaea
      0.048   13.4   0.1      0.065   13.0   0.1    1.2  1  PRK           Phosphoribulokinase / Uridine kinase family
      0.051   13.6   0.1      0.074   13.1   0.1    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
      0.073   13.6   0.3       0.11   13.0   0.2    1.3  1  AAA_23        AAA domain
      0.088   13.1   0.3       0.12   12.6   0.3    1.4  1  AAA_22        AAA domain
       0.14   11.6   0.3       0.21   11.0   0.3    1.3  1  ParA          NUBPL iron-transfer P-loop NTPase
       0.14   12.0   0.1       0.27   11.1   0.1    1.4  1  APS_kinase    Adenylylsulphate kinase
       0.17   12.1   0.1        0.3   11.3   0.1    1.5  1  AAA_33        AAA domain
        0.2   11.3   0.0       0.21   11.3   0.0    1.1  1  AAA_15        AAA ATPase domain
       0.22   11.1   0.3       0.39   10.3   0.3    1.4  1  AAA_25        AAA domain


Domain annotation for each model (and alignments):
>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   1.3e-36     9e-34       1     130 [.       8     139 ..       8     142 .. 0.86

  Alignments for each domain:
  == domain 1  score: 116.2 bits;  conditional E-value: 1.3e-36
        MobB   1 vlgivgksgsGKTtLleklipelkarglrvgtiKhahhgfdvdkpgkDsyrhrkAGAkevlvaskerlalikel.eeaelsleellarlse..vDlvlv 96 
                 ++g+vg+sg+GKTtL+ kl++ l+++g++vg++Khah+gf++d pgkDs++++++GA++v+++s+++ a+i +   ++++ l+  ++ +++  + ++l+
  CCG91670.1   8 IVGFVGRSGCGKTTLICKLVALLTSKGYKVGALKHAHKGFQMDCPGKDSFKFKDSGASSVCIISEKQAAMIVDCeCSQQMILNAFFDLMRSfrYHFILI 106
                 799*********************************************************************9975558889999999966679***** PP

        MobB  97 EGfkkealpkievl.raelgkeelllledekliav 130
                 EGfkk ++pk   + r e g+ e+l +e+++ + +
  CCG91670.1 107 EGFKKDPFPKFCFIdRIEQGE-EVL-QETDNCLGF 139
                 **********87551444444.333.456666555 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.6   1.6e-06    0.0011       6      34 ..      13      41 ..       6      49 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.6e-06
                SSTTSSHHHHHHHHHHHHHHTT--EEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  6 tkGGvGKTtlaanLaralarrglrVllvD 34
                + +G GKTtl ++L ++l  +g++V +++
  CCG91670.1 13 GRSGCGKTTLICKLVALLTSKGYKVGALK 41
                689**********************7766 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.3e-06   0.00097      12      37 ..       7      32 ..       2      86 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.3e-06
                SEEEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlkllagllkp 37
                 +v++vG++G+GK+tL+  l  ll+ 
  CCG91670.1  7 AIVGFVGRSGCGKTTLICKLVALLTS 32
                589*************9888877765 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.3   3.4e-06    0.0024       5      31 ..      12      38 ..       8      45 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.4e-06
                E--TTSSHHHHHHHHHHHH...GGGEE CS
    NTPase_1  5 TGppGvGKtTlvkkvlellkssgvkvg 31
                 G++G GKtTl+ k++ ll s+g+kvg
  CCG91670.1 12 VGRSGCGKTTLICKLVALLTSKGYKVG 38
                59***********************97 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.7   3.7e-06    0.0027       4      33 ..       9      38 ..       6      41 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.7e-06
                EEEEESTTSSHHHHHHHHHHHHHHTTS-EE CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkvl 33
                + +vG  G GKTt + KL all+++g+kv 
  CCG91670.1  9 VGFVGRSGCGKTTLICKLVALLTSKGYKVG 38
                669************************985 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.3   3.8e-06    0.0027      31      63 ..       8      40 ..       3      42 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.8e-06
                EEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEE CS
        MeaB 31 vvGltGvPGaGkstlvealglelrrrGkrvavl 63
                 vG+ G  G Gk tl+ +l++ l+++G++v+ l
  CCG91670.1  8 IVGFVGRSGCGKTTLICKLVALLTSKGYKVGAL 40
                69****************************865 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.4   5.9e-06    0.0042       5      30 ..      11      36 ..       7      49 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.9e-06
                EEC-TTTCHHHHHHHHHHHHCTS-SC CS
       NACHT  5 lqGeaGsGKTtLlqklalawaegklp 30
                  G++G+GKTtL++kl+ ++ ++ ++
  CCG91670.1 11 FVGRSGCGKTTLICKLVALLTSKGYK 36
                68***************999887765 PP

>> LpxK  Tetraacyldisaccharide-1-P 4'-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   6.6e-06    0.0047      37     112 ..       6      79 ..       2      92 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.6e-06
                 EEEEEESBSS-HSHHHHHHHHHHHTTTS..-EEEEE--TSSSS-S.EEEEEETT-HHHH-HHHHHHHHHSTSEEEE CS
        LpxK  37 VivVGNitvGGtGKTPlvialvkllqarglkvgvlSRGYggkskgapvlvsaessaaevGDEplllarrtgvpvvV 112
                 + +VG +   G GKT l+  lv ll+++g+kvg l   ++g + ++p   +++ + ++ G  ++ + ++ +++++V
  CCG91670.1   6 IAIVGFVGRSGCGKTTLICKLVALLTSKGYKVGALKHAHKGFQMDCP--GKDSFKFKDSGASSVCIISEKQAAMIV 79 
                 6789999999************************9988888665544..334446777776666666666666666 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   3.8e-05     0.027       3      84 ..      11     103 ..       9     115 .. 0.70
   2 ?   -0.7   0.0       2.6   1.9e+03      44      62 ..     147     165 ..     126     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.8e-05
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl...............klkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdeenpsdlaelirlvsstpypl 84 
                   ++G+sg+GK+tl+ +L++ l++k                + + kds+ ++ +  + +   +++++ +i D   ++ +   ++l+ ++ l+ s+ y+ 
    CCG91670.1  11 FVGRSGCGKTTLICKLVALLTSKGykvgalkhahkgfqmDCPGKDSFKFKDSGASSVCIISEKQAAMIVDCECSQ-Q---MILNAFFDLMRSFRYHF 103
                   78*************999999777788887777777777666667777766666666666655555555543333.3...47777777777777766 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.6
  RNA_helicase  44 wdgYtgqevvvidDfgqvk 62 
                    ++Y++ +v   dD ++++
    CCG91670.1 147 ISSYKNLPVFFRDDASAIS 165
                   5889999999999998876 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.3e-05    0.0091       4      84 ..       9      92 ..       6      99 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.3e-05
   PduV-EutP  4 illiGkvgsGKttLtqalkg.eelkYkktqaiefsdev..iDtPGeylenrklysalivtsaeadvialvqdateeesvfppgf 84
                + ++G++g+GKttL  +l    + k  k  a+++ ++   +D+PG+   + k + a  v+ ++ +  a+++d++ +++++ ++f
  CCG91670.1  9 VGFVGRSGCGKTTLICKLVAlLTSKGYKVGALKHAHKGfqMDCPGKDSFKFKDSGASSVCIISEKQAAMIVDCECSQQMILNAF 92
                559***********8888763444555666666555433699999743333333333333333444455556655555555555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   2.8e-05      0.02      18      40 ..       6      26 ..       1      36 [. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.8e-05
                SCSEEEEEEESTTSSHHHHHHHH CS
      NB-ARC 18 lqslvvalvGmgGvGKttlakqi 40
                +   +v++vG+ G+GKttl+ + 
  CCG91670.1  6 I--AIVGFVGRSGCGKTTLICKL 26
                3..49**************8776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   6.1e-05     0.044     101     122 ..       8      29 ..       2      46 .. 0.74
   2 ?   -1.8   0.0       3.4   2.5e+03     147     166 ..      40      59 ..      35      60 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.1e-05
                  EEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpe 122
                  ++ +vG SG GK+tLi +l+  
   CCG91670.1   8 IVGFVGRSGCGKTTLICKLVAL 29 
                  5679************998764 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.4
                  EEETTTEEEESS-SSSS--G CS
  RsgA_GTPase 147 lelaegglliDtPGfreldl 166
                  l+ a++g+ +D PG  ++++
   CCG91670.1  40 LKHAHKGFQMDCPGKDSFKF 59 
                  556679999*****888875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3   5.1e-05     0.036      21      52 ..       9      40 ..       2      47 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.1e-05
      AAA_30 21 avltGpAGtGKttalkalreaweaaggrvigl 52
                +  +G+ G GKtt++ +l+++++++g++v +l
  CCG91670.1  9 VGFVGRSGCGKTTLICKLVALLTSKGYKVGAL 40
                5579***********************99765 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   5.7e-05     0.041       3      31 ..       9      39 ..       4      51 .. 0.76
   2 ?   -3.1   0.0       6.8   4.8e+03      66      73 ..      85      92 ..      69     109 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.7e-05
                EEEEESTTCCHHHHHHHHH..CT--SS-EEE CS
        cobW  3 tvltGflGsGKTtLlnhll..enraglklav 31
                ++++G  G GKTtL+++l+    ++g+k+  
  CCG91670.1  9 VGFVGRSGCGKTTLICKLValLTSKGYKVGA 39
                445566689*********9777777777765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.8
                TT-HHHHH CS
        cobW 66 redllkel 73
                ++ +l+++
  CCG91670.1 85 QQMILNAF 92
                23333333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   9.3e-05     0.067      27      49 ..      11      33 ..       2      38 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.3e-05
      AAA_29 27 ltGpsGsGKSTllDAiqalLvpa 49
                ++G+sG GK+Tl+  + alL+++
  CCG91670.1 11 FVGRSGCGKTTLICKLVALLTSK 33
                79***********9999999976 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1     5e-05     0.036      26      51 ..      12      37 ..       1     164 [. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5e-05
    ATPase_2 26 YGpegsGKtaLlkeiienledkdkyv 51
                 G+ g+GKt+L+ +++  l +k+++v
  CCG91670.1 12 VGRSGCGKTTLICKLVALLTSKGYKV 37
                59*****************9999976 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   9.1e-05     0.065       1      29 [.       8      36 ..       8      66 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.1e-05
         PRK  1 vIgvagsSGaGkttvarklekifgrekvk 29
                ++g  g SG+Gktt+  kl+ ++  ++ k
  CCG91670.1  8 IVGFVGRSGCGKTTLICKLVALLTSKGYK 36
                78999****************99977666 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1    0.0001     0.074       2      21 ..       9      28 ..       8     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0001
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                v++vGr+  GK+tLi +l+ 
  CCG91670.1  9 VGFVGRSGCGKTTLICKLVA 28
                89*************99985 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   0.00015      0.11      22      46 ..       9      33 ..       7      86 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00015
      AAA_23 22 tlItGpNGaGKTTildAiklaLyge 46
                + ++G  G+GKTT+++ +   L+ +
  CCG91670.1  9 VGFVGRSGCGKTTLICKLVALLTSK 33
                5689************999999875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   0.00017      0.12      10      51 ..      11      55 ..       2     106 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00017
      AAA_22 10 vtGesGtGKTtllrrlleqldeeakaee...erpevvfvtlpsst 51
                 +G sG+GKTtl+ +l+  l+   +      +  + + +++p++ 
  CCG91670.1 11 FVGRSGCGKTTLICKLVALLTSKGYKVGalkHAHKGFQMDCPGKD 55
                489***********9999986544333366544444566666655 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   0.00029      0.21       9      39 ..      11      41 ..       2      51 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00029
        ParA  9 lSgKGGVGKStvavnlAlaLakkglkvgllD 39
                  g+ G GK+t+ ++l + L++kg+kvg l 
  CCG91670.1 11 FVGRSGCGKTTLICKLVALLTSKGYKVGALK 41
                35999***********************885 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00038      0.27       4      36 ..       8      40 ..       5      45 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00038
                EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEE CS
  APS_kinase  4 vvwltGlsgsGKstianalekkLvekgisvylL 36
                +v + G sg GK+t+ ++l   L++kg++v  L
  CCG91670.1  8 IVGFVGRSGCGKTTLICKLVALLTSKGYKVGAL 40
                67799***********************99777 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00041       0.3       2      23 ..       9      30 ..       8      62 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00041
      AAA_33  2 vllvGlpGsGKstlaerllkkl 23
                v +vG +G+GK+tl+ +l++ l
  CCG91670.1  9 VGFVGRSGCGKTTLICKLVALL 30
                669***********99998655 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00029      0.21      28      82 ..      11      82 ..       2     161 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00029
      AAA_15 28 liGkNnsGKSsilealdlFlnnkekkn.................kkvikiekedleifeniseskdikIdve 82
                ++G+ ++GK++++  l  +l+ k +k                  ++++++++   +++   ++   + +d+e
  CCG91670.1 11 FVGRSGCGKTTLICKLVALLTSKGYKVgalkhahkgfqmdcpgkDSFKFKDSGASSVCIISEKQAAMIVDCE 82
                9********************884444788888889999999954444444444444433333333444444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   0.00055      0.39      38      58 ..      11      31 ..       4      45 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00055
      AAA_25 38 laGapgtGKttlaldlalava 58
                ++G++g+GKttl + l++ ++
  CCG91670.1 11 FVGRSGCGKTTLICKLVALLT 31
                68**************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1361.48
//
Query:       CCG91671.1  [L=207]
Description: putative molybdopterin-guanine dinucleotide biosynthesis protein A [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-26   92.4   0.0    4.7e-26   92.1   0.0    1.1  1  NTP_transf_3  MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   2.6e-30   4.7e-26       1     153 [.       7     156 ..       7     166 .. 0.89

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 2.6e-30
                   EEEEEESS-TTTTT.THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHCHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH.SSSCEEEEETT- CS
  NTP_transf_3   1 aviLAGGrSsRmgg.dKallplggkpllervldalraagvdevvvvggdeevlaalarlgvrvvededpgkgplaslaaalraaadadavlvlacDm 96 
                   +viL+GG+++Rmgg +K ll l+gkpl+ +++++l++  v+ +++++++   l+++a++g++v++d  +  gpl+++++ l ++ ++  ++vl+cD+
    CCG91671.1   7 GVILCGGQGKRMGGkEKGLLLLKGKPLFVYAAEKLAPR-VKTLWISANR--FLDEYAKYGWPVIKDCVEKLGPLGGIYSVLLQI-QSPLLFVLPCDC 99 
                   79***********99**********************9.********99..677899**************************9.9*********** PP

                   TT--HHHHHHHHHCHHHHTSSEEEEESSSEEEECC..EEEGGGHHHHHHHCTHTTHHHC CS
  NTP_transf_3  97 Plltpelverllaaaaasgadvvvptyegerghpl..lfrarllsalaallgdqgarrl 153
                   P+++  + + +l+++ +s+a+v+++++  +  + l  lf++++ls l+++l  +g+r++
    CCG91671.1 100 PFFEVGWEKVILEKLLSSSASVAYISDG-QKEQFLfaLFKKSALSPLEEYLL-SGQRQV 156
                   ***************9888888877765.5558887899*********9964.555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1599.13
//
Query:       CCG91672.1  [L=263]
Description: Histidinol phosphatase, PHP family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-09   36.0   0.0    1.4e-08   35.3   0.0    1.6  1  PHP       PHP domain
     0.0046   16.7   0.0     0.0082   15.9   0.0    1.4  1  PHP_C     PHP-associated


Domain annotation for each model (and alignments):
>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.5e-12   1.4e-08       1      72 [.       4      87 ..       4     251 .. 0.73

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.5e-12
                EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTT..............HHHHHHHHHHHHTTTTSEEEEEEE....... CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         PHP  1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlf..............gyvefykaakkkykagikpiiGleayvadds 72
                d+H+Ht  ++  ++ +++e+vk a+e+gl ++++ Dh+++               +y++ +++ ++k   +  + +Gle+++  + 
  CCG91672.1  4 DYHLHTPLCGH-AVGEPSEYVKVAIEKGLIEVGFADHNPMPhyfdnwrmsldqldEYFQLIEETRNKF-PNYPIRLGLECDFLLGY 87
                79*******88.88888************************999999999999998999999887766.68899999996655444 PP

>> PHP_C  PHP-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.2e-07    0.0082       8      32 ..     209     233 ..     203     235 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.2e-07
       PHP_C   8 rrfAeklglpgtgGSDAHrleeVGr 32 
                 ++ A + ++p +  SDAH+++eVG+
  CCG91672.1 209 LEMAYEKKIPILICSDAHSPAEVGS 233
                 68899*******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1918.80
//
Query:       CCG91673.1  [L=390]
Description: Selenocysteine lyase/Cysteine desulfurase (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-46  159.1   0.0    1.9e-46  158.7   0.0    1.1  1  Aminotran_5    Aminotransferase class-V
    8.6e-07   28.4   0.0     0.0029   16.8   0.0    2.1  2  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7   0.0   2.1e-50   1.9e-46      32     370 ..      53     381 ..      28     382 .. 0.92

  Alignments for each domain:
  == domain 1  score: 158.7 bits;  conditional E-value: 2.1e-50
                  SSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEG CS
  Aminotran_5  32 rsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldl 129
                  +  ++ ++ + + +++are+ a+lina+  +ei  +  t+ ++nlva+++   +kpgde+v+   ++  n+ pw++l+ + g+k + +  +e g+++l
   CCG91673.1  53 SDWSQETESFFETITKARETAAKLINAKP-SEIALLGPTALGLNLVANGI--PWKPGDEVVYYPDDYPTNVYPWKNLE-KFGVKTVPLCPEEPGKITL 146
                  466788889999****************7.****9999999*********..69***********************9.6699999************ PP

                  GGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTT.TTSSTT-EEEEEEHHHHHTS..SS. CS
  Aminotran_5 130 delekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghK.llgPtGiGvlyvrkellekleplll 226
                    l + ln ktklva++     +G + + +eigk+++++g+l+ +D+ q++g   +d + +  Dfl++ +hK llgP G G+ y++++l+  l p ll
   CCG91673.1 147 PLLLNVLNSKTKLVALASCHYLSGYLLDYKEIGKALHDRGILFSLDGIQSLGISTMDAEYF--DFLSADSHKwLLGPLGAGIFYCKESLQDYLAPSLL 242
                  *******************************************************999887..77********************************* PP

                  STTSEEEEET.TEEE..EHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSH CS
  Aminotran_5 227 ggemveevsl.eett..faeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvha 321
                  g   v+++ +  + t  +++  +++e+G     giig++a +++l +ig+++i+++   l++yl+e l+ ++   l +  + er ++ivs + +gv++
   CCG91673.1 243 GAWNVKSPHFiAQETmeLEKGARRYESGALYALGIIGMEASMDLLLAIGIDKIRERILFLHQYLRESLNRIGWKCLSDDFPIERCSGIVSATAAGVDP 340
                  ********998554435889999************************************************988887777899*************** PP

                  HHHHHHHHHTTEEEEEE-TTTHHHHHHTT.S-EEEEE--TTS-HHHHHH CS
  Aminotran_5 322 edvatlLdeegIavrsGhhcaqplmkrlalegtvRaSlyiynteeevdr 370
                   ++   L+++gI ++   +        ++ +  +R+S ++ynte+e++r
   CCG91673.1 341 TELLAKLKSQGIIISFRMD--------RNKNWYIRFSPHFYNTEDEINR 381
                  **************86333........458899***********99975 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.2e-07    0.0029      47     173 ..      67     181 ..      43     205 .. 0.83
   2 !    9.7   0.0   4.9e-05      0.44     274     302 ..     292     320 ..     269     370 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.2e-07
                    HHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E.EEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTT CS
  Aminotran_1_2  47 peleealakflgrseklklkreaavvvgsGagaliealifllklnpgde.ilvpdptyasyknilrlsggevvryplyseedfhldlealeealke 141
                     +++e+ ak+++       k++   ++g+ a  l+ +++ +    pgde ++ pd + +++ +  +l ++ v ++pl +ee  +++l  l++ l++
     CCG91673.1  67 TKARETAAKLIN------AKPSEIALLGPTALGLNLVANGIP-WKPGDEvVYYPDDYPTNVYPWKNLEKFGVKTVPLCPEEPGKITLPLLLNVLNS 155
                    678889999999......777745566666666666666666.6777773677888888************************************* PP

                    HHCTTETEEEEEEESS-TTT--B--HHHHHHH CS
  Aminotran_1_2 142 apegnkktkvilvesphNPtGtvatleelekl 173
                          ktk+++++s+h  +G +++ +e+ k 
     CCG91673.1 156 ------KTKLVALASCHYLSGYLLDYKEIGKA 181
                    ......**************999999998776 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 4.9e-05
                    HHHHHHHHHHHHHHHHHHHHHSTEEEECC CS
  Aminotran_1_2 274 leemrqrlqkrrkelrdeLaelglkvlas 302
                    +++ r+r+  ++++lr++L+++g+k+l+ 
     CCG91673.1 292 IDKIRERILFLHQYLRESLNRIGWKCLSD 320
                    6899**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2595.52
//
Query:       CCG91674.1  [L=384]
Description: Cysteine desulfurase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-91  307.2   0.0    1.7e-91  306.9   0.0    1.0  1  Aminotran_5      Aminotransferase class-V
    6.7e-09   35.4   0.0    1.1e-08   34.7   0.0    1.4  1  Aminotran_1_2    Aminotransferase class I and II
      2e-08   33.9   0.0    2.8e-08   33.4   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
    3.1e-07   30.1   0.1    4.9e-07   29.4   0.1    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
     0.0058   15.2   0.1     0.0086   14.7   0.1    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.9   0.0   4.9e-95   1.7e-91       1     370 [.       5     364 ..       5     365 .. 0.96

  Alignments for each domain:
  == domain 1  score: 306.9 bits;  conditional E-value: 4.9e-95
                  EEEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSH CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaeh 98 
                  iyld++Att++ +eVl+++  +++ y++n+ +s ++lg+ea++ v++ r  +a++++ e+ eei+fts++te++n+++ls++r    ++++++t++eh
   CCG91674.1   5 IYLDNNATTPVDPEVLKEMVPFFSVYYGNP-SSPYRLGQEAKQYVKKSRIALARFLGCEE-EEIVFTSCGTESNNAAILSALR-TTGKKRVITTATEH 99 
                  8*****************************.999*************************6.********************88.7778889******* PP

                  GGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEE CS
  Aminotran_5  99 hanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDfla 196
                   a    +++l+ ++g++v  i +++ g+l+l+e+ekll+ +t++v++++++n+tG+++pve+i++++++kg+l+++Da+qa+g+ipid++k+ vDfl+
   CCG91674.1 100 SAIYELCVDLE-KRGFEVLRIGVNASGLLKLEEIEKLLTADTAIVSVMWANNETGVVFPVEQIAAMCQEKGVLFHTDAVQAIGKIPIDLSKVPVDFLS 196
                  **********9.56************************************************************************************ PP

                  EETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCT. CS
  Aminotran_5 197 fsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlks. 293
                  ++ghK+++P+GiG+l++rk   +++ep++ gg+       +e +        +aGT+nv++iig+g+a+e+l ++++e+ +k+  +l++ l++r+ + 
   CCG91674.1 197 LTGHKFYAPKGIGALFIRK--GKQFEPFMRGGS-------QEMH-------RRAGTENVPAIIGMGKAIELL-SQNMEEDNKRILQLRNLLESRILEe 277
                  *******************..************.......8887.......99*******************.99*****************997555 PP

                  STTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTT....HHHHHHTT.S.......-EEEEE--TTS-HHHHHH CS
  Aminotran_5 294 lpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhca....qplmkrlale.......gtvRaSlyiynteeevdr 370
                  +p +r++g dk++r  +++++ f+gv++e +   Ld++gI  ++G++c+    +p+ ++ a+        ++vR+Sl++ynteee+ r
   CCG91674.1 278 IPFTRVNG-DKEHRIVNTTNIFFEGVDSETLLFDLDQKGIYASGGSACTtgslKPSRVLTAMGlnpieakSSVRFSLGRYNTEEEIHR 364
                  ******99.9***************************************999977777777767799999***************975 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   2.9e-12   1.1e-08      46     361 ..      48     367 ..       5     369 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.9e-12
                    HHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHH...HHTTSEEEEEEBEETTTTEE-HHHHHHH CS
  Aminotran_1_2  46 lpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknil...rlsggevvryplyseedfhldlealeea 138
                     ++ + ala+flg       + e  v ++ G+ ++++a+  +l+   +++++  +  ++ + + +   + +g+ev r+ ++  ++  l le++e++
     CCG91674.1  48 VKKSRIALARFLG------CEEEEIVFTSCGTESNNAAILSALRTTGKKRVITTATEHSAIYELCvdlEKRGFEVLRIGVN--ASGLLKLEEIEKL 135
                    5677889******......6677345555567778888889999999999********99987543338899999999988..99*********** PP

                    HTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEE CS
  Aminotran_1_2 139 lkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyil 234
                    l+        t ++ v  ++N tG+v++ e++ ++   ++++++l   D + a++            ++++ p +++  +  K ++  G  +G+++
     CCG91674.1 136 LTA------DTAIVSVMWANNETGVVFPVEQIAAM---CQEKGVLFHTDAVQAIGKI--------PIDLSKVPVDFLSLTGHKFYAPKG--IGALF 212
                    **9......889***********************...***7777777766665555........5899999999**************..***** PP

                    EEH..HHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS........TEEEECCSCSSEEEEEETHHCHH CS
  Aminotran_1_2 235 gna..avvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael........glkvlasqsgmflltdlsaetak 318
                    + +   +   +r  s+ +     +   +a+  + ++ +l  +++ee  +r+ ++r  l +++ e         + ++ + +++ + + +++ e   
     CCG91674.1 213 IRKgkQFEPFMRGGSQEMHRraGTENVPAIIGMGKAIELLSQNMEEDNKRILQLRNLLESRILEEipftrvngDKEHRIVNTTNIFFEGVDSE--- 305
                    *88888899999999999987745555566667777777888****************99866656999999988999999888889999988... PP

                    HHHHHHHHTCTEEEEEGGGGTS...................TTEEEEEC.TTS-HHHHHHHHH CS
  Aminotran_1_2 319 elskkLleevgvyvtpgtsftv...................pgrlRitv.Aglteeeleelve 361
                     l   L  ++g+y + g+ +t+                   ++++R+++    teee+ ++v+
     CCG91674.1 306 TLLFDLD-QKGIYASGGSACTTgslkpsrvltamglnpieaKSSVRFSLgRYNTEEEIHRAVD 367
                    4444454.4599999999999988887777777777777666677777755566666666666 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   7.9e-12   2.8e-08      28     266 ..      31     266 ..      28     288 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 7.9e-12
                      CT--HHHHHHHHHHHH.............HTT-SEEEEES-HHHHHHHHHHHH-..-TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTT CS
  Beta_elim_lyase  28 YgedktvnrLedavae.............lfgkeaalfvpqGtaAnsillkill..qrgeevivtepahihfdetgaiaelagvklrdlknkea 106
                      Yg+ ++ +rL +++++              ++ e ++f+  Gt +n+ ++   l    ++ vi t + h   +e     e  g ++  +  ++ 
       CCG91674.1  31 YGNPSSPYRLGQEAKQyvkksrialarflGCEEEEIVFTSCGTESNNAAILSALrtTGKKRVITTATEHSAIYELCVDLEKRGFEVLRIGVNAS 124
                      5555666666666666666677777777679999*************99944442356778999999********9999999999****99999 PP

                      TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTT.SSEEEEESSST CS
  Beta_elim_lyase 107 GkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsy.vDsvtmslkKd 199
                      G ++le++e+++++  +    ++++s+  +nn   G v ++e+   +aa+++++g+ +h D+      ++++g i+ ++ ++ vD +++ + K 
       CCG91674.1 125 GLLKLEEIEKLLTA--D----TAIVSVMWANNE-TGVVFPVEQ---IAAMCQEKGVLFHTDA------VQAIGKIPIDLSKVpVDFLSLTGHKF 202
                      **************..4....78*********5.9****9875...6899**********96......67777777777755588888888775 PP

                      T--SS-..EEEEE-HH....HHHHHHHHHHHHT---SSTHHHHH..HHH.HHHHHSSTTHHHHHHHHHHH CS
  Beta_elim_lyase 200 llanvG..gvlafrddeledylaerveqrkylggglrqagvlaaleagi.raleeglaslerdhktaeql 266
                        a+ G  ++ + + ++ e +++   + + + +g  +   v+a    g+  a+e+ ++++e+d+k+  ql
       CCG91674.1 203 -YAPKGigALFIRKGKQFEPFMRGGSQEMHRRAGTEN---VPAI--IGMgKAIELLSQNMEEDNKRILQL 266
                      .444444044444445556666666666666665544...5555..332125666666666666665555 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1   1.4e-10   4.9e-07      30     150 ..      53     181 ..      38     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.4e-10
                      HHHHHHHT..-SEEEEESSHHHHHHHH.HHHTTTTTT-EEEEESSS-THHHHHHHHT...T-EEEEE-B-TTTSSB-GGGCGGG--TTE..EEE CS
  DegT_DnrJ_EryC1  30 kafaaylg..vkhaiavssGtaAlhla.LralgvgpgdeVIvpsltFvatanavlel...gakpvfvDvdpdtynidpaaieaaitert..kaI 115
                       a+a++lg  ++  + +s Gt+++  a L+al  + ++ VI++++   a  +  + l   g ++  + v+ ++  ++ ++ie+++t  t    +
       CCG91674.1  53 IALARFLGceEEEIVFTSCGTESNNAAiLSALRTTGKKRVITTATEHSAIYELCVDLekrGFEVLRIGVN-ASGLLKLEEIEKLLTADTaiVSV 145
                      57888988757778889999*9987653788999999**************9987654448899999**9.89****************55456 PP

                      EEB-.GGGB---HHHHHHHHHHCT-EEEEE-TT-TT CS
  DegT_DnrJ_EryC1 116 lpVh.lyGqvadmdalkaiaakhglkvieDaAhAlG 150
                      ++++   G v+ ++++ a+++++g+ +  Da +A+G
       CCG91674.1 146 MWANnETGVVFPVEQIAAMCQEKGVLFHTDAVQAIG 181
                      66651589999************************9 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   2.4e-06    0.0086      68     175 ..      64     177 ..      49     189 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-06
                      SEEEEESSHHHHHHHHHHTTS-T.TEE.EEEE....STSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT---- CS
  Cys_Met_Meta_PP  68 eaalavssGmaAiaaailallka.Gde.ivvs....ddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvD 155
                      e+ + +s+G+ + +aail+ l++ G++ ++++    + +Y+ + +l k+ ++ l i v+     +lee+ek ++  t +v +    n +  v  
       CCG91674.1  64 EEIVFTSCGTESNNAAILSALRTtGKKrVITTatehSAIYELCVDLEKRGFEVLRIGVNASGLLKLEEIEKLLTADTAIVSVMWANNETGVVFP 157
                      56678999*99998888877766588744433222257899999999999999999************************************** PP

                      HHHHHHHHHHTT-EEEEEGT CS
  Cys_Met_Meta_PP 156 iekiaklakkagvlvvvDnt 175
                      +e+ia++++++gvl   D++
       CCG91674.1 158 VEQIAAMCQEKGVLFHTDAV 177
                      *************9988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 2534.59
//
Query:       CCG91675.1  [L=318]
Description: ADP-heptose:LPS heptosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-21   74.3   0.0    1.3e-20   73.8   0.0    1.1  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   7.3e-25   1.3e-20      90     232 ..     157     295 ..     148     309 .. 0.88

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 7.3e-25
                     -HHHHHHHHHHTT--SSS-EEEEE---TTGGGS--HHHHHHHHHHHHHTT-EEEE---GGGHHHHHHTTS-HHHHTTEEE-TTTS-HHHHHHHHH CS
  Glyco_transf_9  90 slkeraaaldaagllaerpyivflpgaskdaKrWpeekyaelaealqekgyqvvLfgsaeaeeeeiaeriaagleekavnllgktsLeelaalla 184
                     +++er+a +  +g  +e  +i++ pg+  ++K+Wp e++    +++q+ g+++ L+ ++++ e+ ++ +i a ++          +L ++ a+l+
      CCG91675.1 157 KDDERKALALLFGIEKENVKIAIHPGSGSQKKCWPVENWISFCQRIQKMGCRLLLIMGPAEMERKELSEIPADVR------IINQDLPSVGAILK 245
                     4555666666777889999******************************************************99......3357********** PP

                     TSSEEEEESSHHHHHHHHTT--EEEEESSS-TTSS-..---TTEEEEESS CS
  Glyco_transf_9 185 kadlvvgnDSGlmHlAaAldrpviaLYgptdpkrtg..plsksativsle 232
                      ++l+ g DSG++ lA A++ p+iaL+gptdp+ +    l k+ +i++++
      CCG91675.1 246 LCNLFCGHDSGITQLAMAVGCPSIALFGPTDPTIWMypRLDKRFKILWNK 295
                     ********************************998664677777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2296.99
//
Query:       CCG91676.1  [L=183]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        1.2    8.4  15.5          1    8.6  14.3    1.5  1  Peptidase_U4   Sporulation factor SpoIIGA
        1.9    8.1   0.0        1.9    8.1   0.0    3.7  4  SLC3A2_N       Solute carrier family 3 member 2 N-terminus


Domain annotation for each model (and alignments):
>> Peptidase_U4  Sporulation factor SpoIIGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  14.3   0.00011         1      33     134 ..      17     140 ..       7     167 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00011
  Peptidase_U4  33 lrlllaAllGalyvvlvlflpklesillsillki..lvsllmvliafgpkslkeflkalllfylvsfllgGilfalsylllkskn............ 115
                   + lll+A++    ++++ fl+  + + + +l k+    s+l+v+i   ++ l e+ +  ++f+l +f++g ++++ +  +++++             
    CCG91676.1  17 IHLLLGAIAFLYPSSFCRFLK--NFPRNDFLGKVlmGTSVLWVIILLATMDLGEYTQYRIWFILFAFVFGTLVIVAIEDFISLRAlalllllganvi 111
                   567777777777777777775..2357778888843457788888899***********************99999999965555555555555666 PP

  Peptidase_U4 116 ..........llvlllgalvaylllkllv 134
                             + +ll+ +   ++++ +l+
    CCG91676.1 112 ldgtflsmrsWRILLVLLAYGWIIVGVLF 140
                   66677777777777777777777766443 PP

>> SLC3A2_N  Solute carrier family 3 member 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00021       1.9      38      66 ..       9      37 ..       6      43 .. 0.86
   2 ?   -3.5   0.4      0.88   7.9e+03      43      51 ..      54      62 ..      52      64 .. 0.69
   3 ?   -1.6   3.0      0.22     2e+03      36      53 ..      74      91 ..      70      99 .. 0.75
   4 ?   -1.7   2.5      0.25   2.2e+03      35      48 ..     123     136 ..     116     165 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00021
    SLC3A2_N 38 lilfwlvwlgmLvgaiviivqapkCkpep 66
                 + f+ +++ +L+gai+ ++  + C+  +
  CCG91676.1  9 AVAFGTGFIHLLLGAIAFLYPSSFCRFLK 37
                588*****************999998766 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.88
    SLC3A2_N 43 lvwlgmLvg 51
                ++w+++L++
  CCG91676.1 54 VLWVIILLA 62
                568877776 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.22
    SLC3A2_N 36 lllilfwlvwlgmLvgai 53
                + +ilf +v+  +++ ai
  CCG91676.1 74 IWFILFAFVFGTLVIVAI 91
                567777777777777766 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.25
    SLC3A2_N  35 wlllilfwlvwlgm 48 
                 ++ll+l+  +w+++
  CCG91676.1 123 RILLVLLAYGWIIV 136
                 57888888888753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1264.06
//
Query:       CCG91677.1  [L=355]
Description: Peptidylarginine deiminase or related enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.9e-101  337.7   0.0   7.9e-101  337.5   0.0    1.0  1  PAD_porph  Porphyromonas-type peptidyl-arginine deiminase


Domain annotation for each model (and alignments):
>> PAD_porph  Porphyromonas-type peptidyl-arginine deiminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.5   0.0  4.4e-105  7.9e-101       2     319 .]      21     353 ..      20     353 .. 0.97

  Alignments for each domain:
  == domain 1  score: 337.5 bits;  conditional E-value: 4.4e-105
                 E--TTS-EEEEEEE--S.TTSGCGGGHHHHHHHHHHHHHHHHTTSEEEEEE.SSHHHHHHHHHC..........EEEEE---SSS-HHHHS-EEEE.E. CS
   PAD_porph   2 mpaEwepqeavwlawPhkeesdweekleeaqeefaelakaiaefepvtllv.edeeaeearell..........velveiptndlWlRDtgpifvvkk. 88 
                 +paEwe+++a+wl+wP ke+ +++  +++a+e +++la ai++ e v++ v ++++  e+++l+          + l+e p  + W+RD+gpifv+++ 
  CCG91677.1  21 FPAEWERHRATWLTWPRKESISFPGLFQAAEEIWVQLALAISQDELVRINVfDKTQFVEVENLIkerggainkkIFLYENPAYEPWCRDHGPIFVRNEe 119
                 79*****************9999999*************************76667999999999*********99********************666 PP

                 TEEEEEEE--HHHHTSSHHTTHHHHHHHHHH.TT-CEEEEEEE--GGGEEEESSSEEEEEHHHHTCTTTSTTS-HHHHHHHHHHHHT-SEEEEESS-ST CS
   PAD_porph  89 elaavdfrFnaWGgkyeeaekdnavarklae.aglerveadlvlEGGsievdGeGtllttescllnpnRNpglskeeieaeLkellgvekviwlkeGla 186
                 e a+vdf +naWGgky +++ d++v++++ + +g+++++  +v+EGG+i+++G+G+ll++++++ npnRNpg+  +eie+ + e lg++kviwl+  ++
  CCG91677.1 120 EIAIVDFIYNAWGGKYPPYDLDDRVPERIGKyLGMRVFSPGIVVEGGAIDSNGNGVLLASRKSIDNPNRNPGVGLKEIEKIFYEFLGIKKVIWLEAEIM 218
                 99***************************999**************************************************************999** PP

                 TTTSSS-GGGTEEEEETTEEEEEE-S-TTSTTHHHHHHHHHHHHTTB-TTSSB-EEEEEEB-S--E...EEE--BTT--EEETTEEEEEE-SSTTCHHH CS
   PAD_porph 187 gddtdgHiDtlarfvapgtvllareddeedenyealkealeiLkaatdakgrklevvelplpeevr...erlpasYaNflivngavlvptfgdeekDek 282
                 gddtdgH+D++ rfv+ +t+++a e++++d+ny  l+++ e+L+++ d +g+++e+ve+p+p++v     rlpasY+Nf+++n+ +++p f+d + De 
  CCG91677.1 219 GDDTDGHVDQYSRFVSVNTIACAFERNASDSNYLSLRKNIEQLTKECDYHGKPFEIVEVPMPNPVIrsgMRLPASYLNFYLTNHSLFIPIFED-PMDEI 316
                 **************************************************************99988766***********************.78*** PP

                 HHHHHHHHSTTSEEEEEETTTGGGGS--TGGGEEEEE CS
   PAD_porph 283 AleilqelfpdrevvgvdaralvlggGsiHCitqqvP 319
                 A eilq lfp+r++++  a++lv+g G+iHCitqq+P
  CCG91677.1 317 AQEILQGLFPERKICPFFAKDLVWGLGAIHCITQQEP 353
                 ***********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2605.41
//
Query:       CCG91678.1  [L=289]
Description: Predicted amidohydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-60  202.9   0.0    6.2e-60  202.7   0.0    1.0  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.7   0.0   3.5e-64   6.2e-60       1     260 [.       3     266 ..       3     267 .. 0.94

  Alignments for each domain:
  == domain 1  score: 202.7 bits;  conditional E-value: 3.5e-64
                   EEEEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBS...SSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEECCTTEEEE CS
  CN_hydrolase   1 rvAvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgy...keeahfleaAeaglgetlallaalarkngiavvigliereltngklqa 94 
                   rvA++Q    a d +++l+++leli++A++ ga++i+ +Elf t y   +   +f+  Ae ++g+tl+ ++++a+k ++++++ ++e++   + l +
    CCG91678.1   3 RVALIQSIG-AVDPTQGLAHHLELISQAKELGAEIICTQELFKTRYfcnRIDSEFFSWAEDINGPTLQCFMEIAKKLNVVLIGSIFEKR--APGL-Y 95 
                   688888666.89**********************************8888889***********************************5..5555.5 PP

                   EEEEEEEETTSEEEEEEE-SS--EECTTSCECCGHHTSCS-SS.S-EEEETTEEEEEEEGGGGGSHHHHHHHHHTT-SEEEE.......BH.GCCCT CS
  CN_hydrolase  95 yntavlldldgklvgkyrKlhLfpgeprpptaverelfepgdg.ipvfdtpvgkiGaaiCyeigfpellralalkgaeilvn.......lserapvp 183
                   +nta+++d+dg+++g yrK h    +p+ p+++e+++f +g+  +pvf+t++++iG++iC++++fpe++r+ alkga+i+++       + e++ ++
    CCG91678.1  96 HNTAIVVDADGSYLGCYRKAH----IPDDPGYFEKYYFTAGENdFPVFQTRYARIGVLICWDQWFPEAARIAALKGAQIIFYptaigwlVEEKMVFG 188
                   *********************....699*******************************************************99888766888888 PP

                   CHHHHHHHHHHHHHHHHHHTSEEEEEEBEEE...HCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEHHHHHHHH CS
  CN_hydrolase 184 ksmgppqwellgraralengcfviaanqvgg...yeqlilwpvghSaiidpdGrilaglgeeeegvliaeidladvratr 260
                   +    ++ ++++ra+a++ng+fv+ +n++g    +++  ++++g S+++dp Gri+ ++ge+ee +l+ e+d++++++tr
    CCG91678.1 189 QDQLTAW-LTIQRAHAIANGIFVASINRTGLegdEKSRCIEFWGRSFLVDPFGRIIKQAGEKEE-ILVGELDFSLIEKTR 266
                   8888777.*************************999999************************7.***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2016.99
//
Query:       CCG91679.1  [L=178]
Description: Starvation-inducible outer membrane lipoprotein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-23   81.1   0.0    5.9e-23   80.9   0.0    1.0  1  Slp       Outer membrane lipoprotein Slp family


Domain annotation for each model (and alignments):
>> Slp  Outer membrane lipoprotein Slp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   3.3e-27   5.9e-23       1     145 [.      11     160 ..      11     177 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 3.3e-27
         Slp   1 LagCas..vPeeirgesatelslsevkaapeaykgkevrlGGkivkvenkkdktrleivslpLds.sgrPelsdeseGRflarvegFlDPaiykkgrlv 96 
                 L gC+   +  + r+++++++s+s ++a+p+a+ g++v lGG+i ++ n++ ++ + +++ pLd  +++P  +++s+G f+   +g +DP +y+ g+++
  CCG91679.1  11 LGGCSIspMTGSYRHKASKQPSFSLLSARPSAFIGQNVLLGGVIQRCMNHEGESLMLVIQKPLDPsTDKPIVQSPSKGKFYLWYRGKVDPKVYSTGKTI 109
                 789999445567788888888*******************************************8799******************************* PP

         Slp  97 TvvGtlkgsetgkigeadytypvvevkgvklWpeeeveesyvkeyyye....p 145
                 Tv+G++ +  +++i+  +  y +ve +++ lWp+e+  ++++k ++ +     
  CCG91679.1 110 TVAGKIVSPFKTSIETPH--YLIVEGEEFFLWPKESLPSYTPKVPTKTilenV 160
                 **************9875..6789********999888877776655555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 1137.80
//
Query:       CCG91680.1  [L=287]
Description: Prephenate dehydratase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-40  137.4   0.0    6.2e-40  137.0   0.0    1.2  1  PDT            Prephenate dehydratase
    8.7e-06   25.4   0.0    1.7e-05   24.5   0.0    1.5  1  ACT            ACT domain
  ------ inclusion threshold ------
      0.043   13.9   0.0      0.082   13.0   0.0    1.4  1  XOO_2897-deam  Xanthomonas XOO_2897-like deaminase


Domain annotation for each model (and alignments):
>> PDT  Prephenate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.0     1e-43   6.2e-40       1     179 [.      16     191 ..      16     194 .. 0.94

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 1e-43
                 EEEES-TTSHHHHHHCCCS.....EEEEES-HHHHHHHHC...TTS-SEEEEEEEESSS-B-HHHHHHHHH.S.SEEEEEEEEEE---EEEE-TT--TT CS
         PDT   1 vaylGpegtyshqAalkvfkaedvelipvasieevfeave...kgeadyavvPiENsteGsVnetlDlLlkes.dlkivgEvvlpiehcLlakpktkle 95 
                 v+ylGpe+t+sh +++k f  +d +  +  sie+++e+v+   +ge  ++++PiENst G + e++DlLl+e  +l+i +E+ l+++ +L++++++   
  CCG91680.1  16 VGYLGPEATFSHLVVKKRF--PDWQHHSLGSIEDIIEFVKtfaDGEERIGLIPIENSTGGMILESVDLLLEEDfHLYIQEELSLNVQLALIGRKGQ--- 109
                 79*****************..88889999999888888762226889***********************96678****************99998... PP

                 T--EEEE-HHHHHHTHHHHHH-.TTSEEEE-S-HHHHHHHHHHCT-TTEEEEE-HHHHHHTT-EEEECS-SS-S--EEEEEEEE CS
         PDT  96 eikkvyShpqalgQcrkfLeehlpqvervavestaeAakkveassdkdaaaiasevaaelyglkvleeniedkknntTRFlvla 179
                 eik++yShp  l  crk+L++++p +++++++st+eAa++   s++   aa+++++a e+y+l++le  + + + n T+F+vl+
  CCG91680.1 110 EIKEIYSHPTPLFYCRKWLKTKFPLAKIQKTASTSEAARI--VSENPYSAALSTRLASEIYKLDILEFPVLEGNVNLTQFFVLS 191
                 9***************************************..88999***********************************97 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.8e-09   1.7e-05       1      66 [.     202     267 ..     202     268 .. 0.97

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.8e-09
                 EEEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT   1 tvlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkle 66 
                 t++ ++v+D+PG L  ++  + d  +Ni +i +r+   k++++ f+  v   ++  ++++al+k e
  CCG91680.1 202 TTIVFSVKDEPGSLCSFLEPFRDGKLNIKRIVSRPIPGKLNTYLFLLSVQAGKESVALEKALQKAE 267
                 68999**********************************************************975 PP

>> XOO_2897-deam  Xanthomonas XOO_2897-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.4e-05     0.082      34      86 ..      96     145 ..      90     153 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
  XOO_2897-deam  34 kllqqleeagvepakvlelytErepClpgneCakllkeslkevevthsvdygk 86 
                     l  ql+  g++++++ e+y+   p     +C+k+lk  ++ +++  +++ ++
     CCG91680.1  96 SLNVQLALIGRKGQEIKEIYSHPTPL---FYCRKWLKTKFPLAKIQKTASTSE 145
                    566788899************99988...************999998875444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2173.96
//
Query:       CCG91681.1  [L=339]
Description: D-glycero-beta-D-manno-heptose 7-phosphate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-36  124.8   0.0    4.8e-36  124.6   0.0    1.1  1  PfkB          pfkB family carbohydrate kinase
    0.00021   20.7   0.0    0.00033   20.1   0.0    1.3  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
  ------ inclusion threshold ------
      0.035   13.9   0.1      0.085   12.7   0.1    1.6  1  DBD_HTH       Putative DNA-binding domain


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.0   8.1e-40   4.8e-36       5     301 ..      21     322 ..      17     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: 124.6 bits;  conditional E-value: 8.1e-40
                 EEEEEEE..EEEEEECSSH...TTSEE.EESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEE CS
        PfkB   5 vviGeal..idliavsekl...egelv.evktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivv 97 
                 +viG+++    +++++++l   ++ ++ ev++ ++ +GGa+ NvA++l    ++v+++g+vG D++G+ ll++l+  g + ++++i ++ +t+ ++ + 
  CCG91681.1  21 LVIGDLMldEFVWGKVSRLspeAPVPIvEVQKCSYFPGGAA-NVARNLLEFTKEVSVLGVVGEDEAGKKLLQSLENFGCNLSGIQIIQNRQTTQKTRIF 118
                 6788888544477888888888777777*************.***********************************************9999999999 PP

                 TTTSEEEEEEEEGGGGGHHHHHHH.....HHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTE..EEEEECESSSHHHHHHHHHHHCTESEEEE CS
        PfkB  98 dedgertivfnrgaaadltkeele.....ededlleeadllyisgllsselpeavleelaeaaknggt..fdpnlldplgaqfkeallellaladllkp 189
                  ++  +++v  + ++ +  ++e       + e +l + dl+ i+     + +  + +++++   n+++   + + +dp +       +  + +++++kp
  CCG91681.1 119 GRQ--QQVVRVDRETKEPIPKEITqnillYLERELDSKDLIIIED----YAKGLLDQTIIDFILNHTKgkDIFVAVDPHS-----NNRLNWTGVSVVKP 206
                 984..5555555556666665433355556666666666666665....5555555555555555555211555555555.....4666679******* PP

                 EHHHHHHHHTSCT...HSHHHHHHHHHHHHHTTS.SEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHH CS
        PfkB 190 neeElealtgekl...edieealaalhklkakga.ktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfana 284
                 n++E+ al+g ++   ed  ++ +a++ l++k + + ++vtlG+eG+l+ ek+g+ k  ++ +++v D+ GAGD+ ++ f  al++g++  ea+ +an+
  CCG91681.1 207 NRKEAIALAGFPDvheEDLTKIREAAEILQKKWHcSYILVTLGEEGMLLLEKEGKPKTISAVSREVFDVSGAGDTAISLFSLALSAGATGFEAALIANH 305
                 *************9998888888999999999999****************999999999999************************************ PP

                 HHHHHHTSSSSSTCSCC CS
        PfkB 285 vAalvvqkkgaiaslpt 301
                  A +vv k g+++++p+
  CCG91681.1 306 GAGVVVGKLGTATCTPA 322
                 *************9986 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   5.6e-08   0.00033      90     221 ..     171     300 ..     156     306 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 5.6e-08
                   EEE---SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT.---S..SHHHHHHHHHHHHH.TT-SEEEEEEGGS-SSSEEEEEEEE.TSS CS
  Phos_pyr_kin  90 VlDPVmvaksgselleeeavealkeeLlplatvitPNlpEaeaLlg.ekik..teedmkeaakkllk.lgakaVlikGghlegeeavvtdvly.dge 181
                   ++D ++  ++g++++ +   ++ ++     ++v+ PN +Ea aL+g  +++  ++++++eaa+ l+k  +++++l++ g+    e     +l+ +++
    CCG91681.1 171 IIDFILNHTKGKDIFVAVDPHSNNRLNWTGVSVVKPNRKEAIALAGfPDVHeeDLTKIREAAEILQKkWHCSYILVTLGE----EGM---LLLeKEG 260
                   56666666666666655555555555557789**************96665236669**********99********997....233...3444888 PP

                   EEEEEEEE----S--BTHHHHHHHHHHHHHHCTSSHHHHH CS
  Phos_pyr_kin 182 eveeleaerietknthGtGCtlssaiaaelakgesleeAv 221
                   + ++++a   e  +  G+G+t  s     l+ g +  eA 
    CCG91681.1 261 KPKTISAVSREVFDVSGAGDTAISLFSLALSAGATGFEAA 300
                   8888888888888899999998888888887777766665 PP

>> DBD_HTH  Putative DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.4e-05     0.085      15      31 ..     151     167 ..     148     168 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
     DBD_HTH  15 ldDkeLsiieatakGIc 31 
                 ld k+L+iie+ akG++
  CCG91681.1 151 LDSKDLIIIEDYAKGLL 167
                 899************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2295.91
//
Query:       CCG91682.1  [L=179]
Description: D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-10   41.1   0.0    2.4e-10   40.3   0.0    1.4  1  Hydrolase_like   HAD-hyrolase-like
    1.8e-10   41.2   0.0    3.9e-09   36.8   0.0    2.5  2  HAD_2            Haloacid dehalogenase-like hydrolase
    5.4e-07   29.4   0.0    7.3e-07   29.0   0.0    1.2  1  PNK3P            Polynucleotide kinase 3 phosphatase
    7.7e-06   26.3   0.0    0.00053   20.3   0.0    2.1  2  Hydrolase        haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.011   16.2   0.1       0.27   11.6   0.0    2.1  2  HAD              haloacid dehalogenase-like hydrolase
      0.027   14.1   0.0      0.078   12.6   0.0    1.7  2  Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosph
      0.075   12.6   0.0       0.65    9.6   0.0    2.0  2  PGP_phosphatase  Mitochondrial PGP phosphatase


Domain annotation for each model (and alignments):
>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   9.3e-14   2.4e-10       3      71 ..      99     165 ..      98     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 9.3e-14
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SE CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvadd 71 
                     +KP+p+m+  a++++++d+++++++GDr  +D+++++n G+k++++  G ++ ++   +   +tyv  +
      CCG91682.1  99 RKPQPTMIWKAAKEYEIDFGRSFFVGDR-LADVLCGRNSGCKTIFINLGRKNLDAFV-ACRLATYVTSS 165
                     7***************************.*****************99998886644.22455666555 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.51   1.3e+03       1      14 [.       5      18 ..       5      23 .. 0.80
   2 !   36.8   0.0   1.5e-12   3.9e-09      93     177 ..      52     142 ..      11     143 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.51
       HAD_2  1 iiFDlDgTlldtee 14
                + FD D+Tl+   +
  CCG91682.1  5 VFFDRDDTLIKNIP 18
                57*******98765 PP

  == domain 2  score: 36.8 bits;  conditional E-value: 1.5e-12
       HAD_2  93 eagyklgivTsksreaveekleqlgiesyFdviv......tsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvia 177
                 + g+  g+ T+++ e+v++ l ++   ++F++i+      t+e++  +KP+p++i ka ++++++  + ++vGD   D+ ++++ g+k+i 
  CCG91682.1  52 QSGVARGLLTTEDVEKVNQRLLEMVGGRFFEKIYlsyegpTQEMTWDRKPQPTMIWKAAKEYEIDFGRSFFVGDRLADVLCGRNSGCKTIF 142
                 456677888888889999999999999******933333334566667*****************************************96 PP

>> PNK3P  Polynucleotide kinase 3 phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   2.9e-10   7.3e-07       3     127 ..       5     126 ..       3     148 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 2.9e-10
       PNK3P   3 aaFDlDstliktksgkefakdaddwkllsesvlekLkklkeegykivifsNqggvvekktkkslekfkekieallkeldvp..llvyaatkk.....dk 94 
                 ++FD D+tlik+    +    +++   + + + ++L +l++ ++ + i+sNq+gv++     ++e++ +  ++ll+ ++      +y++ +        
  CCG91682.1   5 VFFDRDDTLIKNIPYLK----NEKLIEIPHGLDQQLLRLQKASFLLFIVSNQSGVARG--LLTTEDVEKVNQRLLEMVGGRffEKIYLSYEGptqemTW 97 
                 78********9876544....3456778889**************************4..444444444444455555444224577777643434335 PP

       PNK3P  95 yRKPetGmweelkkdleekleidkeksfyvGDa 127
                  RKP++ m+ + +k++    eid  +sf+vGD 
  CCG91682.1  98 DRKPQPTMIWKAAKEY----EIDFGRSFFVGDR 126
                 6******988777665....5699999*****5 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.016        40       2      19 ..       3      20 ..       2      42 .. 0.88
   2 !   20.3   0.0   2.1e-07   0.00053     132     209 ..      52     136 ..      38     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.016
                SEEEEESBTTTBCHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
   Hydrolase  2 ktvvfDkdGTLttgepsv 19
                k+v+fD d TL++  p +
  CCG91682.1  3 KAVFFDRDDTLIKNIPYL 20
                89**********887766 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 2.1e-07
                 HTTEEEEEEESSEHHHHH.HHHHHTTGGGE.SEEEEHHCES.....STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 132 aagievvlltgdnpetae.raanqlGddyf.daviasdiet.....vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaA 209
                 + g+  +llt  + e ++ r+++ +G ++f ++ ++++  t       kp p +  +a++e+ ++  +  +VGD++ D+  +++ 
  CCG91682.1  52 QSGVARGLLTTEDVEKVNqRLLEMVGGRFFeKIYLSYEGPTqemtwDRKPQPTMIWKAAKEYEIDFGRSFFVGDRLADVLCGRNS 136
                 568888899988888888899999**7777444444444448888*********************************9887765 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.04     1e+02       1      42 [.       5      44 ..       5      85 .. 0.69
   2 ?   11.6   0.0   0.00011      0.27     161     187 ..     107     133 ..      62     134 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.04
         HAD  1 alfDfDgTLldgdslelllrfllrrgaprlwralreklllal 42
                ++fD D TL+ +  +++l   +l + ++ l + l++  ++++
  CCG91682.1  5 VFFDRDDTLIKN--IPYLKNEKLIEIPHGLDQQLLRLQKASF 44
                79********99..7777777777777777666666665555 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00011
         HAD 161 wlaaegegidleevvayGDspsDlpll 187
                 w aa++++id+ +++++GD  +D+ + 
  CCG91682.1 107 WKAAKEYEIDFGRSFFVGDRLADVLCG 133
                 88999******************9886 PP

>> Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosphatase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     3e-05     0.078      73      94 ..       2      23 ..       1      31 [. 0.87
   2 ?   -1.2   0.0      0.49   1.2e+03     191     207 ..     111     131 ..      63     144 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3e-05
                     EEEEEE--BTTTEEHHHHHHHC CS
  Acid_phosphat_B 73 kdavvfDiDeTvLsnspYqkyq 94
                     ++av+fD D+T+++n+pY k++
       CCG91682.1  2 NKAVFFDRDDTLIKNIPYLKNE 23
                     589***************7765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.49
                      TTEEE....EEEEESSGGGCH CS
  Acid_phosphat_B 191 kGyni....vlniGDnlsDln 207
                      k y+i      ++GD l D  
       CCG91682.1 111 KEYEIdfgrSFFVGDRLADVL 131
                      347776666677999998875 PP

>> PGP_phosphatase  Mitochondrial PGP phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00025      0.65      42     102 ..       3      69 ..       2      77 .. 0.67
   2 ?    0.5   0.0      0.16   4.1e+02     141     163 ..     122     143 ..     118     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00025
  PGP_phosphatase  42 kavvlDKDnclaap.......kedkvaeeikekleelrevypeksilivSNsaGssd.dkdaekaeale 102
                      kav +D+D++l ++       k  ++++ + ++l +l+++     + ivSN++G      ++e+ e+++
       CCG91682.1   3 KAVFFDRDDTLIKNipylkneKLIEIPHGLDQQLLRLQKASFL--LFIVSNQSGVARgLLTTEDVEKVN 69 
                      89********986433331113335667777777777776655..99*******887555555555554 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.16
  PGP_phosphatase 141 vvgDRllTdvllanmmGslgvwl 163
                      +vgDRl  dvl ++  G  ++++
       CCG91682.1 122 FVGDRL-ADVLCGRNSGCKTIFI 143
                      79***8.5999999999777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1311.86
//
Query:       CCG91683.1  [L=243]
Description: CMP-2-keto-3-deoxyoctulosonic acid synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-49  167.7   0.0    4.3e-49  167.4   0.0    1.2  1  CTP_transf_3  Cytidylyltransferase
    1.8e-07   31.7   0.0    2.6e-07   31.1   0.0    1.3  1  NTP_transf_3  MobA-like NTP transferase domain
  ------ inclusion threshold ------
      0.075   12.8   0.0        1.9    8.2   0.0    2.2  2  IspD          2-C-methyl-D-erythritol 4-phosphate cytidylyltr


Domain annotation for each model (and alignments):
>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.4   0.0   7.2e-53   4.3e-49       1     217 [.       4     207 ..       4     236 .. 0.97

  Alignments for each domain:
  == domain 1  score: 167.4 bits;  conditional E-value: 7.2e-53
                   EEEEEE-SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES-HHHHHHHHHTTSEEEE--TTCSSHHHHHHHHHHHHTTT.TTSEEEEE- CS
  CTP_transf_3   1 iaIipARsgSkRlpgKnlldlggkpliayvleaalkskafekvivaTDseeiknvakefgasvlvtrsslesdterflevvkaflmseneeiivnlq 97 
                   i++ipAR++S+R+pgK+l+ lggkpli++  e+a ++k  +kv+vaTD+++i +v+k fg++ l+t+ss+ s+t+r++ev + ++++     ++n q
    CCG91683.1   4 IIVIPARWSSSRFPGKPLAMLGGKPLIQWAWERAMECKRAKKVVVATDDQRIFDVVKGFGGEPLMTKSSHLSGTDRVAEVAALYQAD----RYINFQ 96 
                   789************************************************************************************....****** PP

                   TT-TT--HHHHHHHHHHHHHSTTSSEEEEEEETTSHHHHTSTTSTEEEETTTSBEEEEESSESSEEHHHHHCTSTTTSEEEEEEEEEEHHHHHHHHH CS
  CTP_transf_3  98 GdnPllqeevikkaietlkenqedylstlvkkvgkeeevlnandlkvllddagkalyfeesvipyireeplelsrrlylshagiytfrkeqplkelv 194
                   Gd+P+l+ + i+++ie +  +    ++tl++k+ + +e  n+n +kv+ d +g a+yf++++ip+ +++ ++ s    l h+giy+f     l+++ 
    CCG91683.1  97 GDEPFLPGKEIDRLIEGMGAA---PIATLARKLMEDSERKNPNVVKVVCDVDGFAIYFSRAPIPFLKNKTINCS---LLAHVGIYAFSSW-ALQKFI 186
                   ********************9...49**********************************************99...************7.999998 PP

                   HSHHHHHSHHHHHT-TTHHHHHT CS
  CTP_transf_3 195 idtptseilekiekleqlrvlle 217
                   +++     le++e leqlr+ ++
    CCG91683.1 187 SLPYGI--LEQVESLEQLRAIEN 207
                   888777..***********9876 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   4.3e-11   2.6e-07       9     119 ..      13     122 ..      11     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 4.3e-11
                   -TTTTTTHHHHCCCCCCHHHHHHHHHCTT..-CEEEEECSHCHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH.SSSCEEEEETT-TT--HHHH CS
  NTP_transf_3   9 SsRmggdKallplggkpllervldalraag.vdevvvvggdeevlaalarlgvrvvededpgkgplaslaaalraaadadavlvlacDmPlltpelv 104
                   SsR+   K+l+ lggkpl++++ +++ +++ +++vvv+++d+ + + ++++g + +  + ++      +a  ++   +ad+++ + +D P+l+ + +
    CCG91683.1  13 SSRFP-GKPLAMLGGKPLIQWAWERAMECKrAKKVVVATDDQRIFDVVKGFGGEPLMTKSSHLSGTDRVAEVAALY-QADRYINFQGDEPFLPGKEI 107
                   66663.49*********************6599*******************999999877766666666666555.9******************* PP

                   HHHHHCHHHHTSSEE CS
  NTP_transf_3 105 erllaaaaasgadvv 119
                   +rl++ + a++ +++
    CCG91683.1 108 DRLIEGMGAAPIATL 122
                   *****9976665444 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00032       1.9       4      56 ..       6      55 ..       3     130 .. 0.81
   2 ?    2.8   0.0     0.014        83     193     220 ..     210     237 ..     192     238 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00032
                EEECTTSSCTT-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGGH CS
        IspD  4 vipAAGsGkRmkaglpKqflelkgqtllehtvdallaskavdkivvvvseddt 56
                vipA  s +R      K +  l g++l++++ + +++ k+ +k+vv+ +++++
  CCG91683.1  6 VIPARWSSSRFP---GKPLAMLGGKPLIQWAWERAMECKRAKKVVVATDDQRI 55
                566666666653...4678889*************************998874 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.014
                 -EEEEE--TTG----SHHHHHHHHHHHH CS
        IspD 193 svkvVeGeednlKittpeDlalAeailr 220
                  ++vV   ++ + i tpeDl  A+ +l+
  CCG91683.1 210 PIRVVSTAYQTVAIDTPEDLSKADQMLK 237
                 5799*******************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1674.95
//
Query:       CCG91684.1  [L=537]
Description: CTP synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   9.2e-124  412.0   1.0   1.2e-123  411.6   1.0    1.1  1  CTP_synth_N     CTP synthase N-terminus
    3.5e-52  177.0   0.0    5.9e-52  176.2   0.0    1.3  1  GATase          Glutamine amidotransferase class-I
    0.00031   20.5   0.7     0.0028   17.4   0.2    2.8  2  Peptidase_C26   Peptidase C26
     0.0099   15.9   0.0      0.018   15.1   0.0    1.5  1  CbiA            CobQ/CobB/MinD/ParA nucleotide binding domain
  ------ inclusion threshold ------
      0.047   12.9   0.0       0.13   11.3   0.0    1.6  2  Glyco_hydro_10  Glycosyl hydrolase family 10


Domain annotation for each model (and alignments):
>> CTP_synth_N  CTP synthase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  411.6   1.0  3.3e-127  1.2e-123       1     265 []       2     267 ..       2     267 .. 0.99

  Alignments for each domain:
  == domain 1  score: 411.6 bits;  conditional E-value: 3.3e-127
                  EEEEEEE--STTTTHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSSTT--CCCC--EEE-TT--EEETHHHHHHHHHT----GGGEEEHHHHHHHHHH CS
  CTP_synth_N   1 kyilvtGGvvSglGkGiiaaslgallksrglkvtlikiDPYlnvdagtlsplehGEvfvlddGaetDlDlGnYeRfldikltkennittGkiyksvie 98 
                  kyi+vtGGv+S+lGkGi+aa+lg+ll++rg+k++l+k+DPYlnvd+gt++p++hGEv+vl+dGaetDlDlG+YeRf+++kl+k nn+ttG+iy++vi+
   CCG91684.1   2 KYIFVTGGVISSLGKGITAAALGTLLERRGVKISLQKLDPYLNVDPGTMNPYQHGEVYVLEDGAETDLDLGHYERFTNVKLSKLNNTTTGQIYETVIQ 99 
                  8************************************************************************************************* PP

                  HHHTTTTTT----CCCHHHHHHHHHHHHHH.HCT-SEEEEEE-S-TTSGGGHHHHHHHHHHHHHH-TTTEEEEEEEE--B-TTTSSB-HHHHHHHHHH CS
  CTP_synth_N  99 kerrGdylGktvqviphvtdeikeriekvakkveadvviveigGtvgdieslpfleairqlklelgkenvllihvtlvpvlkaagelktkptqhsvke 196
                  +er+G+ylGktvqviphvt+eik+ri++va+++  d++i+eigGt gdie+lpfleairq++le+g++++l++hvt+vp++kaagelktkptq+sv +
   CCG91684.1 100 QERQGKYLGKTVQVIPHVTNEIKNRIMRVAESSGCDILITEIGGTTGDIEGLPFLEAIRQMALEVGSDHALFVHVTYVPYIKAAGELKTKPTQQSVAK 197
                  *******************************999**************************************************************** PP

                  HHHHT---SEEEEEESS---HHHHHHHHHHCT--GGGEEEEE--S.-GGGHHHHHHHCTHHHHHHHHTT- CS
  CTP_synth_N 197 lrslGiqpdiivcrsekeleeevkekialfcnvekeavisvkdve.siyevpllleeqglaelileklkl 265
                  lr++Giqp+++vcrs+++l+eev++k++l+cnv+ e vi+  dv+ +iyevpl+l++++l+ l+++ lkl
   CCG91684.1 198 LREIGIQPHVLVCRSDHPLTEEVRAKLSLYCNVSIEGVIEELDVQhTIYEVPLMLQKEKLDALVCKYLKL 267
                  *******************************************98589******************9986 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.2   0.0   1.7e-55   5.9e-52       3     190 .]     303     527 ..     302     527 .. 0.94

  Alignments for each domain:
  == domain 1  score: 176.2 bits;  conditional E-value: 1.7e-55
                 EESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHH...THHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEE..... CS
      GATase   3 iDnydsvtenlvhalvelgvkvevvpidasaeeile...llknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgrkvv..... 93 
                  D+y+s+ e+l+ha++ l + vev+++da+  e++    ll++ dgilv+gG+gs+g+egkiea+k+ar + iP+LG CLGmQ ++ief r+vv     
  CCG91684.1 303 QDAYKSIYEALTHAGAFLSCGVEVKKVDAEEIEEKGaetLLQGSDGILVPGGFGSRGIEGKIEAAKYARLHLIPYLGLCLGMQTAIIEFSRNVVgltda 401
                 69**************************9666654465559**************************************************99999999 PP

                 ..................EEECEEEEEEEEEEEETTT........CGGTTTTSEEEEEEEEEEEEESG...CHHHTTEEEEEEEETTEEEEEEEEETT. CS
      GATase  94 ..................kekekehhggtmrlgddet........allyglknevierhrHryevnpk...elepaglevtakseddeelmeiiekkn. 162
                                   ++k+ + +gg+mrlg+  +         ++yg  ++ +erhrHrye+n +    le+ gl++++++e++ el+e+ie++n 
  CCG91684.1 402 hssefesmtsnpviclleEQKKLSSLGGSMRLGSSLCkllpntkaYEAYGR-DTSRERHRHRYEFNVAyksLLEKFGLKISGTTENG-ELVELIELENh 498
                 99999999999999****9999************999*****999889998.99************99998889999*******998.8********** PP

                 T.EEEESSBTTSTTSTTHHHHHHHHHHHH CS
      GATase 163 p.fvgvQFHPEststpegpellfnflika 190
                 p fvg+QFHPE++s+p+ p++lf  ++ka
  CCG91684.1 499 PwFVGCQFHPEFQSRPNSPHPLFVAFLKA 527
                 ***********************999875 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.57   2.1e+03      49      67 ..     336     354 ..     326     357 .. 0.86
   2 !   17.4   0.2   7.9e-07    0.0028     106     216 .]     375     509 ..     362     509 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.57
  Peptidase_C26  49 eedvkaildkldgllltGg 67 
                    e+ ++++l+  dg+l++Gg
     CCG91684.1 336 EKGAETLLQGSDGILVPGG 354
                    56789999**********9 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 7.9e-07
  Peptidase_C26 106 vPilgiCrGlqllnvalGGtlyqdieeqsgltdhrehe.............q.....saashavkvekgsllaellgseeievnslHhqaike... 180
                    +P lg C+G+q   + +  +++   +++s++ + +  +             +        s   k+ +++  +e++g+++ +    H+   +    
     CCG91684.1 375 IPYLGLCLGMQTAIIEFSRNVVGLTDAHSSEFESMTSNpviclleeqkklsSlggsmRLGSSLCKLLPNTKAYEAYGRDTSRERHRHRYEFNVayk 470
                    788888888888888777777665555444444444444666666544433033333444455555588888888887777777777765555445 PP

  Peptidase_C26 181 ...laeelrveAvae.DgviEaieseeakafvlgvQwHPE 216
                          +l+++ ++e  +++E ie+e+++ +++g Q+HPE
     CCG91684.1 471 sllEKFGLKISGTTEnGELVELIELENHP-WFVGCQFHPE 509
                    5423347899999996779********88.99*******9 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.9e-06     0.018       9      55 ..      13     273 ..       5     339 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.9e-06
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep..................................................... 54 
                   GK  +aa+L+++l rrg ++ l ++Dp  n +    g+ n  +                                                      
  CCG91684.1  13 SLGKGITAAALGTLLERRGVKISLQKLDPYLNVDP---GTMNPYQHgevyvledgaetdldlghyerftnvklsklnntttgqiyetviqqerqgkylg 108
                 569***************************99998...6666665577777777888888888888888888888888887777777777777666666 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        CbiA  55 ................................................................................................... 54 
                                                                                                                    
  CCG91684.1 109 ktvqviphvtneiknrimrvaessgcdiliteiggttgdieglpfleairqmalevgsdhalfvhvtyvpyikaagelktkptqqsvaklreigiqphv 207
                 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666555555 PP

                 .................................................................C CS
                 .................................................................x RF
        CbiA  55 .................................................................d 55 
                                                                                  d
  CCG91684.1 208 lvcrsdhplteevraklslycnvsiegvieeldvqhtiyevplmlqkekldalvckylkldlpeaD 273
                 555555555555555555555555555555555555555555555555555555555555555555 PP

>> Glyco_hydro_10  Glycosyl hydrolase family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.47   1.7e+03     215     237 ..     118     141 ..     111     147 .. 0.82
   2 ?   11.3   0.0   3.8e-05      0.13     196     267 ..     195     266 ..     180     279 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.47
                     HHHHHHHHHHHHTTT.SEEEEEEE CS
  Glyco_hydro_10 215 iseieaalkklaalg.levaitEL 237
                     ++ei++ + ++a+ + +++ itE+
      CCG91684.1 118 TNEIKNRIMRVAESSgCDILITEI 141
                     5688889999988655******97 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3.8e-05
                     T----EEEE--EEET...TSCHHHHHHHHHHHHHTTTSEEEEEEEEEECETTSSHHHHHHHHHHHHHHHHHHHHH CS
  Glyco_hydro_10 196 gvpidgvGiQsHlsv...dspsiseieaalkklaalglevaitELDirvkkssseeealeaqakrykelvkalle 267
                       ++  +GiQ H+ v   d+p ++e++a+l+ + ++++e  i ELD++ +     e  l  q+++  +lv ++l+
      CCG91684.1 195 VAKLREIGIQPHVLVcrsDHPLTEEVRAKLSLYCNVSIEGVIEELDVQHTIY---EVPLMLQKEKLDALVCKYLK 266
                     4567789*****98622255689************************99543...35555666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3568.06
//
Query:       CCG91685.1  [L=262]
Description: 2-dehydro-3-deoxyphosphooctonate aldolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-63  212.2   0.0    7.4e-63  212.0   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family
  ------ inclusion threshold ------
      0.065   13.5   0.0       0.12   12.7   0.0    1.3  1  DUF5091       Domain of unknown function (DUF5091)


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.0   0.0   8.2e-67   7.4e-63      15     269 ..       4     257 ..       1     261 [. 0.96

  Alignments for each domain:
  == domain 1  score: 212.0 bits;  conditional E-value: 8.2e-67
                   TTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S..SSTTS-SHTTHHHTHHHHHHHHHHHT-EEEEEESSCCTHHHHHHHE CS
  DAHP_synth_1  15 kddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKp.RrstvgfkGlindpdlkilsrikkelglpiatevldpisvqyladvv 110
                   k ++++viaGPC+ie+ e ++++A +lkk++ k++  l++ ++++f+K+ R+s+++f+G+++ ++l++ls+ik+++g+ + t+v+ p++v+ +a++v
    CCG91685.1   4 KKEPFIVIAGPCVIESMELLIDTALELKKITTKYQ--LPFYFKSSFDKAnRSSINSFRGPGLAKGLNMLSQIKEKTGCALTTDVHLPDQVKPVAQIV 98 
                   6789*****************************98..************************************************************ PP

                   SEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TTHHHHHHHHHHHHHHHTTEEE--EEEEEEEEEESTSSSSSCHCHHHHHHHHHHCTSS-EEEESCH CS
  DAHP_synth_1 111 diiqiGArttesqdllelasglskpvglKngtdvaidemkaaaekilflgvetkgiilcerglrggkktnrdvedvaavkilkeetgklpvmvDvsH 207
                   di+q++A++++++dl  + +++ k+v++K+g+++a+d++  +aek+  +g  +k+  ++erg+++g+       d++ +  +++++   +v++D++H
    CCG91685.1  99 DILQVPAYLCRQTDLILACGESGKIVNVKKGQFLAPDDVDLIAEKLQWVG--CKNFFFTERGSCFGY--HDLIVDMRGIVRMRSKK--HKVIFDATH 189
                   **************************************************..8**************..999*************9..49******* PP

                   HHTTCG......GGGHHHHHHHHHHHHHTTESEEEEEBBSSCCC-SSTGGGGBBCTCBHHHHHHHHHH CS
  DAHP_synth_1 208 ansrkd......ykrqkkvlklakaaiaaGiaGvmiEshlnpgkalsdgkqalkygksetdacilkel 269
                   +++r+       +++ +   +la+aa++ Gi+G++ E+h+ p+ka+sd++ ++ +gk++++ + l + 
    CCG91685.1 190 SVQRPSalgkqtGGEEAMAFPLARAAVSIGIDGLFFETHPYPEKAMSDASTMIPLGKVDQMLECLLKI 257
                   *******999999999999**************************************99988776665 PP

>> DUF5091  Domain of unknown function (DUF5091)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.3e-05      0.12      33      86 ..     131     184 ..     121     195 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
     DUF5091  33 yisPislkhlkaklenlglvsweltenglkFifknfilkFkGsltitvkedkif 86 
                 +++P  +  + +kl+ +g  ++ +te g  F +++ i++ +G++ +  k++k++
  CCG91685.1 131 FLAPDDVDLIAEKLQWVGCKNFFFTERGSCFGYHDLIVDMRGIVRMRSKKHKVI 184
                 677888889999*************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1909.31
//
Query:       CCG91686.1  [L=176]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.027   13.1   0.0      0.035   12.7   0.0    1.1  1  EspG      EspG protein


Domain annotation for each model (and alignments):
>> EspG  EspG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.9e-06     0.035      71     117 ..      37      84 ..      27      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.9e-06
                 E---TTEEEEEEEE-TTS-EEEEEEETT--EEEEEEETTSEEE.EEEE CS
        EspG  71 vlpqdnelGkvaaafsDGsslrisvtkselieaevttpdgdki.svll 117
                 +lpq n +Gk++a+      + +sv++ e+ ++++   d+d++ +++l
  CCG91686.1  37 ILPQRNAEGKLQATIHGEEAVAVSVNRIEIRKMKIELFDNDRVtTTIL 84 
                 89************99999************************54444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1223.80
//
Query:       CCG91687.1  [L=178]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-16   60.0   0.5      3e-16   59.6   0.5    1.2  1  OstA      OstA-like protein


Domain annotation for each model (and alignments):
>> OstA  OstA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.5   1.7e-20     3e-16       2     112 ..      48     153 ..      47     154 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1.7e-20
        OstA   2 IeAdkaelddkkkvavftGnVvvtqGnltlkAdkvtvtqdkkskkierleakgtatfrqkvdlvgeqirGkAerieydskkeiivLtgnatlt.qnsns 99 
                 ++++++ +d+++++  f+GnV+   +n +++++++tv+ d+  ++i+rl akg      +  l +e+  +kA ++ey + +++++Ltgn ++  +n++ 
  CCG91687.1  48 VTSNTFRMDQNNHQGFFSGNVITIANNFKMRSNEMTVFFDESGSEIKRLIAKG------DAVLIQEKRTAKASQMEYIVPEDKLILTGNPEVIeENKDH 140
                 89***************************************************......9999999**********************998776***** PP

        OstA 100 veGseitydikee 112
                 v+G++it+ ++++
  CCG91687.1 141 VTGNVITIFRNTN 153
                 *******999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1458.81
//
Query:       CCG91688.1  [L=393]
Description: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-27   94.2   0.1    1.5e-26   93.5   0.1    1.4  1  MGDG_synth       Monogalactosyldiacylglycerol (MGDG) synthase
      8e-15   54.8   0.0    1.1e-14   54.3   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    6.6e-14   52.2   0.0    9.5e-14   51.7   0.0    1.2  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
    1.5e-09   38.4   0.0    2.7e-09   37.5   0.0    1.4  1  Glyco_trans_1_4  Glycosyl transferases group 1
    1.7e-09   37.0   0.0      3e-09   36.2   0.0    1.4  1  Epimerase_2      UDP-N-acetylglucosamine 2-epimerase
    0.00016   22.0   0.0    0.00033   21.0   0.0    1.6  1  Glyco_trans_1_2  Glycosyl transferases group 1
     0.0024   17.0   0.0      0.012   14.7   0.0    1.9  2  DUF354           Protein of unknown function (DUF354)


Domain annotation for each model (and alignments):
>> MGDG_synth  Monogalactosyldiacylglycerol (MGDG) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.1   5.8e-30   1.5e-26       1     169 []      20     185 ..      20     185 .. 0.94

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 5.8e-30
                 -HHHHHHHHHHHHHHHGGGEEEEEEE------------------------.---------------------------HHHHHHHHHHH--SEEEE-ST CS
  MGDG_synth   1 HnqaaealkealkaefgdeyqvlvkdllkelnpfllkavlksYlflvkvs.alyrllyygteekiqkksilaklatflakelaalleeeqPDiiisthp 98 
                 H  aaeal++a+ ++     qv+  d lk+ n++ + +  k Y  lv  + ++++  y+ t+e ++ +++  +l  + +k l++++ +++P + ++th 
  CCG91688.1  20 HVRAAEALEKAFLED-PRVGQVICVDALKFTNKIFRDFYSKLYIQLVERApSFLGWWYRTTDEPWKTDKMRLMLDRLNTKPLIDFISRYRPQVTVCTHF 117
                 999********9666.67899999************************9989999999****9***999999*************************** PP

                 TTTHHHHHHHHTTT-TTTSEEEEE---SSS--GGG--TT-SEEEESSHHHHHHHHHCT--GGGEEE--S-- CS
  MGDG_synth  99 lvaelplsvLkskellkrvlvvtvvtDfellhktWlrkeidryyvaskevkkealekGidksnikvtGiPv 169
                 l+ae+ +s+L s++++   l+  vvtDf+ +h +Wl +   ry+va++e k  +++ Gi+k++i   GiP+
  CCG91688.1 118 LPAEI-ISYLISQKKIDCRLS-IVVTDFH-CHAMWLCRVFHRYFVANEESKIHLINLGIPKERIIFSGIPI 185
                 *****.999988888866666.5*****5.7***************************************8 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   4.3e-18   1.1e-14       7     171 ..     200     358 ..     194     359 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 4.3e-18
                      HHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES..STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEE CS
  Glycos_transf_1   7 kklgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG.ngeeekelkklaeelelsdnviflgevsredleellknadifvlp 99 
                      k+lg++ + ++il ++    +   + +++++++l+    p  +++++G n ++e++++ +a +l + ++++++g+ +   +++l+ +ad+f+ +
       CCG91688.1 200 KSLGFDPELPVILISAGALGVSPAEAILESLETLQ---MPIQVVIVCGkNPQMEEKIRTKASNLSN-HTIRIYGFTE--SMHKLMDAADLFIGK 287
                      66677777777777777777777788888888884...678888999*888888999999888888.9********9..9************** PP

                      ESSBSS-HHHHHHHHTT--EEEET.TTTHCHHCHTTT..SEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHHH CS
  Glycos_transf_1 100 sisEgfGivllEAmaaglpviasn.aggpaevvkdge..tGllvkpnnaealaeairklledeelrerlgenark 171
                          + G+++ EAma glp i+   ++g  e   d+   +G+ +k n+  +la ++  ll+ +++ +++++na k
       CCG91688.1 288 ----PGGLTASEAMAMGLPMIIISpIPGQEEFNSDYLleKGVAIKCNEFTTLAYKVSYLLSHPQKLQQMRKNAFK 358
                      ....*****************9999***********999*********************************976 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   3.7e-17   9.5e-14      18     164 ..     226     365 ..     210     368 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 3.7e-17
                      CTSHHHHHHHHHHHHCHHHCCT-EEC---STT..-TTTT.CEEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT--EEEE.--TT....S CS
  Glyco_tran_28_C  18 vlselkllelksrelqvlhqtGkreleevkik..veelt.lkvevfefidkmaeaikaadLvIsRAGagtiaEllalgkplIlv.plpeaaenh 107
                      +l+ l+ l+     +qv++ +Gk+ + e ki    ++l+ ++++++ f+++m +++ aadL I++ G  t  E++a+g+p+I++ p p     +
       CCG91688.1 226 ILESLETLQM---PIQVVIVCGKNPQMEEKIRtkASNLSnHTIRIYGFTESMHKLMDAADLFIGKPGGLTASEAMAMGLPMIIIsPIPG----Q 312
                      4444444444...59*********77766666335555589*****************************************9966777....6 PP

                      -HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS---S---SSCH..CHHHHHH CS
  Glyco_tran_28_C 108 qdnNakelekagaalvleqkeltpekLeeallelaaeklrlaekskasaaskfadla 164
                       + N  +l ++g+a+     e+  ++L+ ++  l++++++l+++ k++ +++ +++a
       CCG91688.1 313 EEFNSDYLLEKGVAIKCN--EF--TTLAYKVSYLLSHPQKLQQMRKNAFKHSTPKAA 365
                      788999999999887554..44..77**************99999998777776665 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.1e-12   2.7e-09      20     133 ..     226     344 ..     210     345 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.1e-12
                      HHHHHHHHH.HHEE.EEEES---...HHHHHHHTT-T.T.EEEE---THHHHHHHH-SEEEE-----SHHHHHHHHTT-EEEE-.TGGGTTT-- CS
  Glyco_trans_1_4  20 lleavpllrkkdvr.lvivGdgp.rpeeleelaagleer.veftGfvedlaellaaadvfvaPsegfglkllEamaaglpvVat.dvggiaevv 109
                      +le ++ l+  +++ ++++G++p ++e+++ +a++l+++ +++ Gf e++ +l++aad+f+      gl++ Eama+glp++   +++g +e+ 
       CCG91688.1 226 ILESLETLQ-MPIQvVIVCGKNPqMEEKIRTKASNLSNHtIRIYGFTESMHKLMDAADLFIGKP--GGLTASEAMAMGLPMIIIsPIPGQEEFN 316
                      344444444.335515556666676678887777888777*********************976..48************87764899977755 PP

                      .T...TSSEE--TT-HHHHHHHHHHHHH CS
  Glyco_trans_1_4 110 .g...engllvppgdpealaeailrLle 133
                           e g+ ++ ++   la ++  Ll+
       CCG91688.1 317 sDyllEKGVAIKCNEFTTLAYKVSYLLS 344
                      5244578888888889999999998886 PP

>> Epimerase_2  UDP-N-acetylglucosamine 2-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   1.2e-12     3e-09     124     346 ..     155     372 ..     150     373 .. 0.73

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.2e-12
                  SEEEESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHHHH...T-HHHHHH--SS-EEEEE---HHHHTSHHHHHHHHHHHHHHHHHH--EEEEE CS
  Epimerase_2 124 dlhfapteearenLlkegeeeerifvvGntviDalllskeeieeklkaseilkelkekkyvlvtlHrrenedeperlkeilealkalakekdvevvvp 221
                  + +f+++ee++ +L+++g+++eri+  G ++   ++ s ++ie k     +   ++e +++l+ +      +  +  + ile l++l+    ++vv++
   CCG91688.1 155 HRYFVANEESKIHLINLGIPKERIIFSGIPIDPIFKPSPSKIEPKK---SLGF-DPELPVILISAG---ALG-VSPAEAILESLETLQMP--IQVVIV 242
                  568*************************886555578888887444...4422.477777777763...333.33489**********98..999*** PP

                  --..HHHHHHHHHHHHH-TTEEEE----HHHHHHHHHC-SEEEES-HHHH.HHHHHCT--EEESSSS-S-TH......HHHTTSEEE-TT-HHHHHHH CS
  Epimerase_2 222 vhnnprtrkrlleeleelenvtlieplgyldflsllknaklvltdSgGiq.eEapslgvpvvnlReeteRpe......gveagtnvlvgtdkeeIvaa 312
                  + +np+++++++ + ++l+n t+     ++++++l+ +a+l ++  gG+   Ea+++g+p++ + +    +e       +e+g ++ ++ +   +  +
   CCG91688.1 243 CGKNPQMEEKIRTKASNLSNHTIRIYGFTESMHKLMDAADLFIGKPGGLTaSEAMAMGLPMIII-SPIPGQEefnsdyLLEKGVAIKCN-EFTTLAYK 338
                  ************99999965554444456789****************9746***********9.333333311111133444444453.44555566 PP

                  HHHHCT-..--......--TT-SS-HHHHHHHHH CS
  Epimerase_2 313 leklledkkelekmanaknpYgdGkaseriveil 346
                  ++ ll++ ++l++m++++    + ka+ +iv+il
   CCG91688.1 339 VSYLLSHPQKLQQMRKNAFKHSTPKAAYKIVKIL 372
                  6667767788888888777777888888888877 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.3e-07   0.00033      14      76 ..     292     359 ..     270     367 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.3e-07
  Glyco_trans_1_2  14 rlfEaaacGafaltdda.egleelftpgk..evilfe..dleelaekiryllanpeerraiaeaarer 76 
                        +Ea+a+G +++  ++ +g+ee++++    +++ ++  +   la+k+ yll++p++ ++++++a ++
       CCG91688.1 292 TASEAMAMGLPMIIISPiPGQEEFNSDYLleKGVAIKcnEFTTLAYKVSYLLSHPQKLQQMRKNAFKH 359
                      578**********99889999998766533355555556999**********************9765 PP

>> DUF354  Protein of unknown function (DUF354)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.22   5.6e+02      73      92 ..      98     117 ..      83     127 .. 0.77
   2 !   14.7   0.0   4.6e-06     0.012     210     316 ..     230     345 ..     211     360 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.22
      DUF354  73 inlskliaevkpdvalakhs 92 
                   l ++i+  +p+v+++ h 
  CCG91688.1  98 KPLIDFISRYRPQVTVCTHF 117
                 56889**********99996 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.6e-06
      DUF354 210 veklkdridilviprdeeqkeiyeevdnviviketv.......dalsllkrsdlviGa.GGtmnreaallGipv..vscypqkllsvdkyliekdlmir 298
                 +e l+  i+++++   + q e     +   +  +t+           l+  +dl iG  GG    ea  +G+p+  +s  p++      yl+ek+  i+
  CCG91688.1 230 LETLQMPIQVVIVCGKNPQMEEKIRTKASNLSNHTIriygfteSMHKLMDAADLFIGKpGGLTASEAMAMGLPMiiISPIPGQEEFNSDYLLEKGVAIK 328
                 6888888888877666666543222222223333321111111445799********736777889999****6225888888888888********** PP

      DUF354 299 stdvdeivntalrllvdk 316
                 +++   +    + +l ++
  CCG91688.1 329 CNEFTTLAY-KVSYLLSH 345
                 **9988776.45555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2800.64
//
Query:       CCG91689.1  [L=533]
Description: Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-50  170.5   1.7    4.3e-29  101.2   0.3    2.2  2  Glyco_hydro_1   Glycosyl hydrolase family 1
      2e-05   24.2   0.0    3.7e-05   23.3   0.0    1.4  1  Cellulase       Cellulase (glycosyl hydrolase family 5)
  ------ inclusion threshold ------
       0.01   15.3   0.5       0.02   14.3   0.5    1.4  1  Glyco_hydro_85  Glycosyl hydrolase family 85


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.3   7.2e-33   4.3e-29       7     212 ..      26     248 ..      20     264 .. 0.81
   2 !   68.4   0.1   6.7e-23     4e-19     284     436 ..     351     504 ..     325     516 .. 0.83

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 7.2e-33
                    TT-EEEEE--HHHHH--TTSTT---BHHHHHHHHGGGSTTS---SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHH.....STTSTT-...... CS
  Glyco_hydro_1   7 edFlwgaataayqiEGawnedGkgesiwDtftetpgkvlegsngdvacdsYhrykeDvallkelgvkayrfSisWpRi.....lPkGege...... 91 
                    ++Flwg+at+ yq EG++n +G  + +w  ++e+  +++e   +  +c++++  +eD++  k+lg++a+r+ isW+Ri     lP++e+       
     CCG91689.1  26 HEFLWGVATSPYQHEGGMNGEGEPLNNWA-WAERD-NQVEP--SGKSCNFWNLAEEDLKRAKDLGLNAFRLGISWSRIqpvydLPHPENPsflepp 117
                    57**************************8.55555.44444..4558*******************************555555566432122222 PP

                    .--HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHH-GGG-SHHHHHHHHHHHHHHHHHTTT-.........-EEEEEE-HHHHHHHHHTSS CS
  Glyco_hydro_1  92 .inekGlayYerLidelleagieplvTlyHwdlPqaLqdeGgwenrsiidafkeyaevvfkrfgdkv.........klwlTfnEpnvvallgyltg 177
                      +++ la Y ++++++ + g+ep+vTl+H+  P +L     w  rs+id++ +y ++ +k + +++         +++lT+nEpn++a+  yl+g
     CCG91689.1 118 pFDPTVLARYAEILAHCRALGLEPVVTLHHFTHPAWLGL-DAWIHRSTIDHYLHYVDYTIKYLLEHLpkefhceppRFFLTVNEPNMLATCHYLYG 212
                    24678899*****************************75.57*************998887766665332233333589***************** PP

                    -STT-.S-TTTHHHHHHHHHHHHHHHHHHHHHHHTT CS
  Glyco_hydro_1 178 efaPg.kkdleaayeaaHnlllaharavklykevaq 212
                     f+ g ++ ++aa +   +ll ah++a+ l+++ ++
     CCG91689.1 213 YFPSGsNRGIHAATTCLIHLLEAHSKAYFLIHSLYK 248
                    *****66677888999999********999888775 PP

  == domain 2  score: 68.4 bits;  conditional E-value: 6.7e-23
                    TT--SEEEEEEEEEEEEEE--....-STT---SSGGGGG-SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE----EE-BSSS...HHH- CS
  Glyco_hydro_1 284 kgkadflglnyYtsrlvknkesee.aslskteekkleeevdpslpktdigwiiepeglrkllellkkeYqklpiyiteNGlgakdeiee...gkve 375
                    + + df++++yY   + ++   ++ +    +++k+++e + + +++  ++w + pegl  + + l ++Y+ lp++i+eNGl+++ +      ++ +
     CCG91689.1 351 QRPFDFIAFDYYDPFVEHALRWPRwNDELPKRNKTFHEWMMEAFTSKWWDWRMLPEGLAFVTHQL-THYH-LPLMISENGLAYRYTPSGmmeKRRD 444
                    5678********998887777444134445555566666678899999***********999999.6788.9**********99875444426666 PP

                    -HHHHHHHHHHHHHHHHHHHTT--EEEEEEE-SB----GGGTTSEE--SEEEETTTTTEEE CS
  Glyco_hydro_1 376 DdkRidYlkehlnevkkaiedgvdlkgYvawsllDnfewaegyskrfGlvyvdrnetleRt 436
                       R +Y++ h+  v+k  ++g+ l gY+ wsl+Dn+ew  ++s rfGl+ vd+++ l R+
     CCG91689.1 445 SVLRSHYIRAHVRIVNKLRKEGAPLFGYLYWSLVDNYEWG-SFSPRFGLYSVDFQNGLYRK 504
                    678************************************6.6***********99988886 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   6.3e-09   3.7e-05       5     132 ..      59     202 ..      55     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 6.3e-09
                 SEEEEGEEECETTSCGGSHHHHHHHHHHHT-SEEEEEEECTGGT.......TSSTTT....GCTHHHHHHHHHHHHHHHHTT-EEEEEEESS....... CS
   Cellulase   5 gkpvnlkglstswgnpyttkalidevkdagfntvRlpvswgelv.......enapdy....kvdenslerveevvkyakenglyvildiHse....... 85 
                  ++v+ +g s+++ n   +++ ++ +kd g n++Rl +sw +++       +++p++     +d++ l+r+ e+++ + + gl  ++ +H+        
  CCG91689.1  59 DNQVEPSGKSCNFWN--LAEEDLKRAKDLGLNAFRLGISWSRIQpvydlphPENPSFleppPFDPTVLARYAEILAHCRALGLEPVVTLHHFthpawlg 155
                 566777788888555..6899999****************7777666777777777788888999**************************99977777 PP

                 .TTTCSSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS-- CS
   Cellulase  86 .egwltkadgnssedtaeeffkklwtqiAerykkndevvifelmNEPh 132
                  ++w+++ +   +    +  +k l++ + +++   ++   f ++NEP+
  CCG91689.1 156 lDAWIHRSTIDHYLHYVDYTIKYLLEHLPKEF-HCEPPRFFLTVNEPN 202
                 66666666666666666666777778899999.555555778889987 PP

>> Glyco_hydro_85  Glycosyl hydrolase family 85
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.5   3.3e-06      0.02     115     188 ..     336     411 ..     310     437 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-06
                     HHHHHHHHHHHHHHHHHTT---EEEEES-B-SS..SSB---SSS-TTTGGGG---SEEEE-S---HHHHHHHHHHH CS
  Glyco_hydro_85 115 aeklkefleylreegekrveeleviWYDsvtee..gklswqnelneknasffeaadsiflnYtWnkssleesaela 188
                      +++ke+le + ++ ++ ++ +   +YD ++e+     +w++el ++n++f e + + f+  +W++++l e ++++
      CCG91689.1 336 ESAWKELLEVIYASKQRPFDFIAFDYYDPFVEHalRWPRWNDELPKRNKTFHEWMMEAFTSKWWDWRMLPEGLAFV 411
                     567788888888899999999999*******99999******************************9987766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3652.02
//
Query:       CCG91690.1  [L=211]
Description: Zn-dependent hydrolase, glyoxylase family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-20   71.8   0.7    1.4e-19   70.9   0.7    1.4  1  Lactamase_B    Metallo-beta-lactamase superfamily
     0.0001   21.9   0.0    0.00012   21.6   0.0    1.1  1  Lactamase_B_2  Beta-lactamase superfamily domain
    0.00044   20.2   0.0      0.004   17.1   0.0    2.0  1  Lactamase_B_3  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
       0.16   12.5   0.0       0.41   11.2   0.0    1.6  2  HAGH_C         Hydroxyacylglutathione hydrolase C-terminus


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.7   3.1e-23   1.4e-19       2     197 .]      10     191 ..       9     191 .. 0.89

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 3.1e-23
                  CCCSSEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTT CS
  Lactamase_B   2 gpdpvnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkgllla 99 
                  g++++n+yli g+ g i iD+  ++  + +      l+ k  +vd ++lTH+H+DHi+ ++ + +++ + v++++ +     + ++  + + kg+ ++
   CCG91690.1  10 GELQTNAYLISGKHGYICIDA--PQGITSF------LKQKKIEVDSLLLTHGHFDHIWEARLIEKTFHCTVYVHPSDFNLVQNSGGVAYMGIKGAVAP 99 
                  7899****************8..4444444......589***********************************************999999998888 PP

                  CHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHHCHSEEEE.S CS
  Lactamase_B 100 gvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaevrdpsdaekyldsllklaglkaevlvp.g 196
                  ++ +++  v   +    +  ++++  +++pgh++g++ ++ +    +f+GD l+ag++gr+dl + g++     + ++yl      + l++ ++v+ g
   CCG91690.1 100 PEEIIALPVLAGGSVHWGCNGVEFILFHIPGHSPGSVAFYVPRMHAVFCGDILFAGSIGRTDL-PNGNFSALMEGIKNYL------FSLPPQTVVYpG 190
                  88899999999999999999999****************************************.6666666666666666......899999988889 PP

                  S CS
  Lactamase_B 197 H 197
                  H
   CCG91690.1 191 H 191
                  9 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.8e-08   0.00012      30     142 ..      44     150 ..      26     173 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.8e-08
                    SEEEEE-SS--HHHHGGGGCCCC.C--EEEEEEEEHHHHHHCCTTCGHHHCHTT....TTEEEEEE-..TTSEEEECSTTEEEEEEEE-EE--CTC CS
  Lactamase_B_2  30 pidaVllthaHyDHlaglltlre.lrpkklplyapkgvlavleanfvylaleee....pavnvheld..wgesfelgdggleitatparhksgrrl 118
                    ++d +llth+H+DH+  +  + + ++    ++y++++    +++++  + ++ +    p++++  l   +g+s++ g  g+e+ ++ +++ s+   
     CCG91690.1  44 EVDSLLLTHGHFDHIWEARLIEKtFH---CTVYVHPSDFNLVQNSGGVAYMGIKgavaPPEEIIALPvlAGGSVHWGCNGVEFILFHIPGHSPG-- 134
                    699************88777777443...78****99999999999999999998888666666666778999999999999999999999998.. PP

                    CE-TTTSEEEEEECTTEEEEEESS CS
  Lactamase_B_2 119 drnagdtlGlriegggkrvyyigD 142
                           +++ +  ++ +++++gD
     CCG91690.1 135 ------SVAFYV--PRMHAVFCGD 150
                    ......333333..3556666666 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   8.9e-07     0.004       6      72 ..      13      80 ..      12     205 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.9e-07
  Lactamase_B_3  6 ghnsflletagarilvDPfka.nlgyeppaeeaDlvlisqaledHahletlkqlaenvkvleegesle 72
                     n++l++++   i +D  ++ +  +++++ e+D +l+++++ dH   ++l +     +v  ++++++
     CCG91690.1 13 QTNAYLISGKHGYICIDAPQGiTSFLKQKKIEVDSLLLTHGHFDHIWEARLIEKTFHCTVYVHPSDFN 80
                   67999****9999****9988888999999***************87666655433333333333333 PP

>> HAGH_C  Hydroxyacylglutathione hydrolase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.9   8.7e+03      45      52 ..      11      18 ..       8      43 .. 0.79
   2 ?   11.2   0.0   9.2e-05      0.41      40      54 ..     195     209 ..     191     211 .] 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.9
      HAGH_C 45 EkktNpFL 52
                E++tN +L
  CCG91690.1 11 ELQTNAYL 18
                88999988 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 9.2e-05
      HAGH_C  40 stladEkktNpFLRl 54 
                 +t+++Ek+tNpF++ 
  CCG91690.1 195 TTIQKEKETNPFFKE 209
                 78**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1551.14
//
Query:       CCG91691.1  [L=465]
Description: Ornithine/acetylornithine aminotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-93  312.6   0.0    4.4e-93  312.1   0.0    1.1  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.1   0.0   2.5e-97   4.4e-93      12     406 .]      38     437 ..      29     437 .. 0.91

  Alignments for each domain:
  == domain 1  score: 312.1 bits;  conditional E-value: 2.5e-97
                  EEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHH....HHHCT-..SEEEEESSHHHHHHHHHH CS
  Aminotran_3  12 vitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekl....lklapkgldkvflansGseAvetAlK 105
                  ++t+a+G+yl d++g+rylD+++++ v ++G ++Pkv k+++e+++     ++++ +   +  lae l     +  + +l+ +f++nsG+eA+e+A+K
   CCG91691.1  38 IYTRAQGAYLFDKEGNRYLDFLGGFGVFAVGRNNPKVKKVIEEVLDLDLPNMVQMDSALLSGLLAEALvkrfEACGASHLNAIFICNSGTEAIEGAIK 135
                  69*****************************************99866555556666666666777774332555566788***************** PP

                  HHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHH.CHTCCCEEEEEE-SCE CS
  Aminotran_3 106 larkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleeleale.kkkkdevaAvivEpiq 202
                  +ar+      at++++i++++++fHG  +g+lsv+++ +  +++fgpflp+  ++ + d                 l+ le + kk +vaA+++Ep+q
   CCG91691.1 136 FARA------ATRRPRILSLTNSFHGLSMGSLSVSAN-PYFHEGFGPFLPGCEHVVMGD-----------------LNGLEhELKKGDVAAFLFEPVQ 209
                  ****......***************************.********************9.................7777768999************ PP

                  TTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTS.....B--TTTT- CS
  Aminotran_3 203 gegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgs.....hgsTfgGn 294
                  g  G++++ +++++++++lc+k++ lli DEvqtG+GrTGk+f+ eh++++pD++tlaKal+gG  p  a+++++e++q++ +       h+sTfg n
   CCG91691.1 210 GK-GIYFPRDNYFEEAQKLCRKYGTLLISDEVQTGLGRTGKWFGFEHWNLEPDIVTLAKALSGGyVPCGAIATRREIYQRVFNRLdrcivHSSTFGRN 306
                  *7.8************************************************************99************987444469*********** PP

                  HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.................HHHHHHHHHCTEE-E CS
  Aminotran_3 295 placavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.................keilkkakekGvlil 375
                   laca  la+l i+ee++l+en ++ g++++++L  lqkky+ ikevR kGlmiaie+ e++  +                    + + + e+ +l +
   CCG91691.1 307 NLACACGLATLSILEENNLIENSKNCGEKIETALIGLQKKYDWIKEVRVKGLMIAIEFGEPKSITGkmawktihsmdkglfpqLVVSTLMSEHRILSQ 404
                  *************************************************************9988899************986445556667777776 PP

                  EETT..TEEEE---TT--HHHHHHHHHHHHHHH CS
  Aminotran_3 376 saGd..nvirllppliitdeeidelleilkkal 406
                   a +  ++++ lpplii deei+ ++++l+++l
   CCG91691.1 405 VAANnlDIVKCLPPLIIGDEEINYFITSLEAVL 437
                  66667889*******************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3425.60
//
Query:       CCG91692.1  [L=78]
Description: hypothetical protein MFUM_190041 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.49
# Mc/sec: 478.50
//
Query:       CCG91693.1  [L=46]
Description: hypothetical protein MFUM_190042 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 356.51
//
Query:       CCG91694.1  [L=45]
Description: hypothetical protein MFUM_190043 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.28s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 334.06
//
Query:       CCG91695.1  [L=298]
Description: 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-13   49.0   0.4    5.2e-11   42.7   0.4    2.5  1  OGG_N     8-oxoguanine DNA glycosylase, N-terminal domain
    0.00017   22.0   0.0    0.00026   21.4   0.0    1.2  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei
    0.00025   20.8   0.1      0.001   18.8   0.0    2.0  2  HHH       Helix-hairpin-helix motif
  ------ inclusion threshold ------
      0.058   14.0   0.1       0.11   13.1   0.1    1.5  1  HHH_5     Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> OGG_N  8-oxoguanine DNA glycosylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.4   1.2e-14   5.2e-11       5     121 .]      15     116 ..      13     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.2e-14
                 S-SS--HHHHHCSSS-SSEEE-TTS-EEEEETTEEEEEEEETTEEEEET--.............HHHHHHTHHHHTTTTS-HHHHHHHHTT.SHHHHHH CS
       OGG_N   5 skeeldlkktLkcGQsFrWkktekteyvgvlgdrvveLkqeeddllyrtlesesstkasseeakeeeteeilrdYfnLdvdleelykewskkdplfkks 103
                 s+  l+l++tL cGQ+F+Wk+ ++  ++g +g   + +   +d+l+++  +                  + +++Yf+  +dle++++++ ++d  ++++
  CCG91695.1  15 SSDCLNLDATLGCGQTFSWKRLDNGGWIGQAGSIPYAIFPASDKLYIYSPS---------------GSLDGFQEYFQTTFDLEKVFNSFPSDDYILQQA 98 
                 55569*****************9999*******999999777777766555...............467889*************************99 PP

                 HCCTTT-------HHHHH CS
       OGG_N 104 adkftGiRllrqdpwEcL 121
                   + + +R+l+qdpwE++
  CCG91695.1  99 RLFSQKLRILKQDPWETI 116
                 9999************96 PP

>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.7e-08   0.00026       4     100 ..     120     259 ..     117     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 5.7e-08
                 HHHTTS-HHHHHHHHHHHHHHHS.........HCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH........................... CS
                 xxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
     HhH-GPD   4 ilsqqtsderanriierlferfg.........fptpedladadeekLrelirelGfyrrKakyikelArilv........................... 66 
                 ++s+  ++  + ++++ l++ +g         fp+ped+ d  ++ L+++    +++  +  y+ ++A il+                           
  CCG91695.1 120 LCSSAKPIIQIRKVTQLLRRFYGkevwpgffsFPSPEDIFDKGPSLLEQC----KLG-FRSDYVWKVASILAkenkkflsmlaiastdtirqtllelpg 213
                 55665566666666666666666888999999******************....777.77*************************************** PP

                 ..............S-SSS--TTSHHHHHHHHHHTTSSSSTTHHHHHH CS
                 ..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 ..............gkpdvlivvDvhvrrilkrlrsikekktkkkvek 100
                               ++  ++++ D ++ r+l+ ++++    ++k  +k
  CCG91695.1 214 igrkiadcvllfgyARI-EVFPIDRWMERVLQTFYFHLLE-KRKASKK 259
                 ************77555.57777***********999663.4444444 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.3e-07     0.001      12      30 .]     207     225 ..     205     225 .. 0.90
   2 ?   -1.4   0.0      0.59   2.6e+03       6      15 ..     254     263 ..     250     263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.3e-07
                 HHHTSTT-SHHHHHHHHHH CS
         HHH  12 eLlalPGVGpktAeaIlsy 30 
                  Ll+lPG+G+k A+++l +
  CCG91695.1 207 TLLELPGIGRKIADCVLLF 225
                 79**************976 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.59
                 HTSSHHHHHT CS
         HHH   6 ipasreeLla 15 
                 + as +eLl+
  CCG91695.1 254 RKASKKELLS 263
                 789*****86 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.4e-05      0.11      23      49 ..     192     220 ..     180     225 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.4e-05
                 --SHHHHHHS-H..HHHHTSTTS-HHHHH CS
       HHH_5  23 iesvedlaaadv..eeLakipGiGkktAe 49 
                 + s  ++a+ d+  ++L ++pGiG k A+
  CCG91695.1 192 FLSMLAIASTDTirQTLLELPGIGRKIAD 220
                 5566689998844499***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1971.63
//
Query:       CCG91696.1  [L=312]
Description: DnaJ-class molecular chaperone [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-38  130.8   0.0    5.5e-38  130.4   0.0    1.2  1  DnaJ_C    DnaJ C terminal domain
    2.6e-26   91.5   4.2    2.6e-26   91.5   4.2    1.9  2  DnaJ      DnaJ domain
  ------ inclusion threshold ------
       0.11   12.6   2.3       0.17   11.9   0.2    2.2  2  RRM_3     RNA binding motif
       0.15   12.6   0.8       0.34   11.4   0.1    1.9  2  PRAP      Proline-rich acidic protein 1, pregnancy-specific u


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.0   1.2e-41   5.5e-38       3     148 .]     143     292 ..     141     292 .. 0.96

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 1.2e-41
                 EEEEE-HHHHHH-.EEE.EEEE.......T.EEEEEE-TT--TT-EEEETT-SSSS...S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C   3 veleisleelykGktkkikikrnvikkekk.tlevkipaGikdgqkirlegeGdeeg.gepGDlivtikvkphpvFkrkgndlyveveislaeallGgk 99 
                 +e+ ++l+e+++G  ++i+++r ++  ++k t +++ip Gi++gq+irl+g G+++  g++GDl++++k ++hp+F+ +g+dly+++ei+ ++a+lG +
  CCG91696.1 143 AEILVNLDEVLHGSVRQITVTRPTNGGNRKdTYQITIPVGIEEGQRIRLAGLGEPSAyGKAGDLFLKVKYAKHPFFRVEGKDLYYDLEIPPWDAALGST 241
                 68899*****************999666666***********************7778***********99**************************** PP

                 EEEE-SS-EEEEEE...--TT-EEEETT-S-EET...TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C 100 levptldgkvklki...tqpgevlrikgkGmpklkkpgkrGdlyvevkvefP 148
                 +++ptl+gkv+lki    ++g++lr+kg G+p l+ ++krGdly  +++++P
  CCG91696.1 242 VQIPTLEGKVNLKIpagCKSGTKLRLKGLGLPYLD-GKKRGDLYAVISINVP 292
                 **********************************7.**************99 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   4.2   5.9e-30   2.6e-26       1      63 []       5      67 ..       5      67 .. 0.99
   2 ?   -0.8   0.0      0.39   1.7e+03       1      29 [.     282     311 ..     282     311 .. 0.77

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 5.9e-30
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                +yYe Lgv+k+a++deI++a+r+la+ yHPD  ++++ aeekFk ineAyevLsdpekRk+YD
  CCG91696.1  5 NYYETLGVDKNATQDEIRAAFRRLARIYHPDVAKDKKAAEEKFKDINEAYEVLSDPEKRKKYD 67
                7********************************9999*************************9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.39
                 HHHHHHTSSTT.G-HHHHHHHHHHHHHHHS CS
        DnaJ   1 dyYeiLgvskd.asedeIkkaYrklalkyH 29 
                 d+Y++  ++   a ++e kk + +l++k H
  CCG91696.1 282 DLYAVISINVPqAVNNEEKKLWEQLSKKKH 311
                 678888888763567778999999999887 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   3.9e-05      0.17       8      57 ..      11      60 ..       8      79 .. 0.88
   2 ?   -0.6   0.1      0.31   1.4e+03      77      90 ..     297     310 ..     289     311 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.9e-05
                E-SSS--HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHHHHHH CS
       RRM_3  8 GlnkelsredikellsklgevayvdyekgdkegevrFkedeeakkaleka 57
                G++k+ ++++i+ ++++l  + + d++k++k +e +Fk+ +ea ++l   
  CCG91696.1 11 GVDKNATQDEIRAAFRRLARIYHPDVAKDKKAAEEKFKDINEAYEVLSDP 60
                8999************************************9999998764 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHHH CS
       RRM_3  77 eeEkeywkkiledk 90 
                 +eEk+ w+++ ++k
  CCG91696.1 297 NEEKKLWEQLSKKK 310
                 79999999998876 PP

>> PRAP  Proline-rich acidic protein 1, pregnancy-specific uterine
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   7.5e-05      0.34       8      38 ..      31      62 ..      29      65 .. 0.86
   2 ?   -3.5   0.1       3.4   1.5e+04      19      30 ..     297     308 ..     293     310 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.5e-05
        PRAP  8 LYHpsteEvqaeeepklr.allsqqvyqgPEe 38
                +YHp++  +++ +e+k++  +++++v+  PE+
  CCG91696.1 31 IYHPDVAKDKKAAEEKFKdINEAYEVLSDPEK 62
                9*****999999999999456779*******8 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.4
        PRAP  19 eeepklrallsq 30 
                 +ee+kl+++ls+
  CCG91696.1 297 NEEKKLWEQLSK 308
                 567788877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2288.19
//
Query:       CCG91697.1  [L=102]
Description: Helix-turn-helix transcription regulator MerD [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00013   22.0   0.0    0.00017   21.6   0.0    1.2  1  MerR_1    MerR HTH family regulatory protein
      0.007   16.2   0.0     0.0093   15.8   0.0    1.3  1  MerR_2    MerR HTH family regulatory protein


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.9e-08   0.00017       1      62 [.      28      90 ..      28      95 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.9e-08
                EEHHHHHHHHTS-HHHHHHHHHHTT-S-EE-TTS-EEEEHHHHHHHHHHHHHHH.TT--GGG- CS
      MerR_1  1 ysigevakilgvtthtlrywekegllkpkrteggrryYtdedierLklikyLlk.rGltlkgi 62
                ys+  ++k++g+    +  + + gl+ p +t +   y++d+ i  Lk+  +L+  + + +++ 
  CCG91697.1 28 YSLEALSKETGIDLEIVSLYLHLGLITPWETVHDKLYFNDDAIFLLKQFERLRLeHRMGFQAL 90
                8999**************************99999*****************98788877766 PP

>> MerR_2  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     1e-06    0.0093       2      52 ..      29      80 ..      28      98 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1e-06
      MerR_2  2 tieelcertgieeeflieLvelgliep.eieeeewyfdesqlarlekavRLq 52
                ++e l++ tgi+ e++     lgli+p e+++++ yf+++++  l+++ RL+
  CCG91697.1 29 SLEALSKETGIDLEIVSLYLHLGLITPwETVHDKLYFNDDAIFLLKQFERLR 80
                5778999********************888889999**********999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 671.59
//
Query:       CCG91698.1  [L=368]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-45  155.1   0.0    3.1e-45  154.8   0.0    1.1  1  Methyltransf_28  Putative S-adenosyl-L-methionine-dependent m


Domain annotation for each model (and alignments):
>> Methyltransf_28  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.8   0.0   1.8e-49   3.1e-45       2     260 ..      47     293 ..      46     295 .. 0.90

  Alignments for each domain:
  == domain 1  score: 154.8 bits;  conditional E-value: 1.8e-49
  Methyltransf_28   2 laiwlleewqalgrpskklrliElGpGkGtLmadvLrtlrkflpefyealeyhlvEaSpqlrerQknrLkekakevkkestvkslgvkveWlee 95 
                      la +++e+w++l + ++ l +iE G+G G+L++d+ + l k+++e+ ++l+y  +E  +  + +Q++ ++++              ++  W++ 
       CCG91698.1  47 LAMQCIEVWKQLRKTDS-LWIIETGAGGGELACDIVDWLDKNESELSKKLSYLFLEPFSYNQLQQQQEINQRI-------G---TTDRFFWISG 129
                      899*********66665.****************************************************973.......3...444556*999 PP

  Methyltransf_28  96 lkeip..eetgfilanEffDaLPihqfertedgwrellveltpekkakekefrltlsp.setdplsevlpklskrlkaleegsrieispeaeal 186
                      ++e+p  ++ ++++anEf+D LP++++  ++++w e  v+++      e+++ +  +p +e+++l+ ++ +l+       eg+++ei++ea+++
       CCG91698.1 130 WEELPilSDFTILIANEFLDSLPVKRISFQKGKWMESHVGIN-----HENKLCFIYQPiKENSKLACMIDELGIPKI---EGYTTEIHLEAMEW 215
                      99998899**********************************.....466677776551345579999**9999866...9************* PP

  Methyltransf_28 187 lediaerlakegGaaLiiDYgessse......pngtLrairkhklv.dpleepGevDltadvDFtalaeaaeeasglevlg 260
                      +++ +++++     ++iiDYg +++e      +ngtLr++++h++  +pl  p ++D+t++ +F+ + +aa e+sgle+ g
       CCG91698.1 216 IKKASAKISS--SLFFIIDYGLTKEEyfapwrSNGTLRCYKNHQIFdNPLLFPADCDITTHLNFSLILKAA-EESGLESIG 293
                      **********..**********77778*******************55***********************.666888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 2261.82
//
Query:       CCG91699.1  [L=564]
Description: 4-alpha-glucanotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.9e-125  417.5   1.4   8.5e-125  417.2   1.4    1.0  1  Glyco_hydro_77   4-alpha-glucanotransferase


Domain annotation for each model (and alignments):
>> Glyco_hydro_77  4-alpha-glucanotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.2   1.4  4.8e-129  8.5e-125       2     465 ..      16     535 ..      15     539 .. 0.91

  Alignments for each domain:
  == domain 1  score: 417.2 bits;  conditional E-value: 4.8e-129
                     -GGGSB-SSSSSS--SSHHHHHHHHHHHTT--EEEES--SE.ST.--TTS-SESSSE-GGGS-CHG.HHH......HHHHHTTSSHGGGS..SB- CS
  Glyco_hydro_77   2 plsSLrskksyGiGdlgdlkefvdflakagqklwqilPlndtepdtsPYsslSafalnplyidlealpel......aelaeegllakeel..erv 88 
                     p++SLr+++++GiGd +++ + +df+++++++++qilP+n+t++d sPY++lS++a++p+++ +e  p++      ++  +  +l+ke+l  + +
      CCG91699.1  16 PVFSLRRENDLGIGDTKAVLSTIDFCKRMHINYLQILPINETSEDNSPYNALSSIAYDPMLVTME--PDFipglssED-LKFSNLEKERLegQFI 107
                     89***************************************999*********************..88888888533.34444555555457** PP

                     -HHHHHHHHHHHHHHHHHTHHH.HHSHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHCT-SSGGGS-HHHHTTTH....HHHHHHHHHTHHHHHHH CS
  Glyco_hydro_77  89 dyekvielklkllrkaferfkekkkakeskefeeFveenaewledyalFmal.kekfegaswseWpeelrkrke....ealekakkelaeeiefy 178
                     dy++v ++k+kl++kaf rf ++++  ++kef +F+++n++wl+ y+lF++l  e+ + ++w++Wpee++++++     + +k +k + e+ +fy
      CCG91699.1 108 DYKTVKSIKKKLFEKAFYRFIASSHLVKKKEFIHFCKSNQDWLSTYTLFRFLvDENAGDTHWNDWPEEIKTYENaiewLKRQKDQKWILEKRRFY 202
                     *********************9999999************************66666789**************99665667777788999**** PP

                     HHHHHHHHHHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHHCGGGB-BTTTSEESS......BSSST.T-EEEEEE-B-HHHHHHTTTHHHHHH CS
  Glyco_hydro_77 179 kflQylfdkqlkelkeyanekgieligDlpigvardSadvWanpelFkldesaGaPP......Dafsa.tGQnWgnPlynweelekdgyawwikr 266
                      f+Q+++++q+k+++eya++k+i+l+gD+p g++r S+dvWa +elF+++ s+GaPP      D+f +  GQnWg+Ply+we++e+++++ww++r
      CCG91699.1 203 SFIQWVAHTQWKQVREYADSKNIKLMGDIPYGINRYSSDVWASQELFDCQWSCGAPPetffqgDEFVKkWGQNWGFPLYRWENHEAESFRWWKRR 297
                     *********************************************************7777777775438************************* PP

                     HHHHHTT-SEEEETTGGGGTEEEEEET..............................T-SSCTC-EEEE--HHHHHHHHHHHHHHCT-EEEE--- CS
  Glyco_hydro_77 267 lraalklfdalRIDHvlGffrlWeipa..............................eektalngeyvkypgeelfevlkeelqkgkllviaEDL 331
                     + +++k+f+a+R+DHvlGffr+++ p                                ++     ++++ +g+++++v+ e +  ++  viaEDL
      CCG91699.1 298 ILQTTKIFHAFRLDHVLGFFRIYAFPWfpeqnneflplsieevklktggklprffpgPDEPDASALVNENQGKKILSVILETA--KNEIVIAEDL 390
                     ***********************9999999**************************955677788999999************..9********* PP

                     SS--HHHHHHHHHTT-BEEEEGGGTTSTTTT.TTSGGGS-SSEEEES--TTS--HHHHHT...........HHHHHHHHHHHHHHHHTT...CCS CS
  Glyco_hydro_77 332 GvvpdevrelleelgilgmkvlqfafedeenefylphnypensvvytgtHDndtlrgwwe...........eerakekealleylkeeg...pee 412
                     G+vp  vr ll+++gi+g+ + +f++ ++  +f++  +yp+ sv++ +tHD+++l+  ++           +++++e +++ ++l+ +    p++
      CCG91699.1 391 GLVPRYVRPLLQKMGIPGFTIPMFERLSDY-SFKPITHYPALSVATYATHDHPPLMLQYNrlchravqdpnSQERRELQRIADFLGWNIselPNH 484
                     **************************7777.5************************999999999998775555557777778775554777779 PP

                     -GGGHHHHHHHHHHHSSSSEEEEEHHHHTTTGGG-S--TT-SSSSTTS-B--S CS
  Glyco_hydro_77 413 aeeeivealirlalasvaklailplqDlllgeeeriNvPgtveeepnWrwrlk 465
                      +++i+ ++i+++l s++ l+++++ Dl lg e ++N+Pg+  e  nW+ rl+
      CCG91699.1 485 YDSRIHLRFIETLLYSPCWLVVFTISDL-LGIELQFNHPGSKPE-DNWKDRLE 535
                     99**************************.*************55.6****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4002.99
//
Query:       CCG91700.1  [L=142]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 979.41
//
Query:       CCG91701.1  [L=294]
Description: Sugar phosphate isomerase/epimerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-26   92.9   0.0    2.2e-26   92.6   0.0    1.1  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.0   1.2e-30   2.2e-26       5     210 .]      31     240 ..      27     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 1.2e-30
                   HHCT-SEEEEECCTCSHHHHC.....HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS.HHHHHHHHHHHHHHHHHHTBSEEEEEBCC.. CS
  AP_endonuc_2   5 aeaGfdgvElfgrdlvpvsel.....sdeelrelrkaldelglriaslslftrfgypdederear.reesvdalkraielaaaLGapllvlhpGt.. 93 
                   a+  f+ vE++ +++ +           +el+el+ +l++ +l+  sl+ +  ++ ++  + ++  +ees++ +  a+++ +++G+++lv+hp++  
    CCG91701.1  31 AKEKFEVVEIWSSPDSQLQYThfdvrNLKELEELKTQLAAFNLKAISLHSPFYPSFDLS-HPDPSiQEESINVTVAAAKALKEIGGEILVVHPSGve 126
                   55567777777666666666667777889***************555555555555433.56666*****************************988 PP

                   .GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTTEEEEEEHHHHHHH.TTTHHHHHHHHHGGEEEEEE CS
  AP_endonuc_2  94 .agagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgdeelarlldavdspnvgvclDtgHllia.eedvddalraladrikhvHi 188
                      + +  +e+ ++e++++++  + +y++k gv lalEtl +++  +  + l  l++  + + vg+c+DtgH l++ ++d+d + +++a+r+  +Hi
    CCG91701.1 127 kNQFSELTEENKRLELIRKNIGIIYQYTHKLGVILALETLLPQFLGSNLDFLFHLVSSFPED-VGICFDTGHVLLNhQADIDLQYKKIAKRVVSLHI 222
                   64455555556*********************************98888***********87.********************************** PP

                   .EESSTTTTSSTTEESTTSSSS CS
  AP_endonuc_2 189 kDakgdlgagrdrhvpigeGei 210
                    D+ g     +d+h+ +g+G i
    CCG91701.1 223 QDTLG----QHDDHLVPGDGII 240
                   *****....***********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2063.47
//
Query:       CCG91702.1  [L=481]
Description: Isocitrate dehydrogenase (NADP) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-90  302.5   0.0    4.7e-90  302.2   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase
    4.2e-31  107.3   0.0    9.9e-31  106.1   0.0    1.7  1  TT1725    Hypothetical protein TT1725


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.2   0.0   5.2e-94   4.7e-90       2     348 .]       6     336 ..       5     336 .. 0.96

  Alignments for each domain:
  == domain 1  score: 302.2 bits;  conditional E-value: 5.2e-94
                 EEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHS.SSS-HHHHHHHHHSSEEEEEE---CSSSSSSHHHHHHHHHHHTTEEEEEE CS
      Iso_dh   2 iallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetg.eplpeetleaikeadvvllgavgtpkekevrpengLlaLrkeldlfanlr 99 
                 i++  gdgiGpe++ea+lkvl aa     +ele+e +++G++ + + + + +   + e++k+++v l+++++tp++++ ++ n  ++ rk ++lfan+r
  CCG91702.1   6 ITVAYGDGIGPEIMEATLKVLFAAG----AELEIETIEIGQKIYMQGNlTGIDPSAWESLKRTKVFLKAPITTPQGGGFKSLN--VTFRKAFGLFANVR 98 
                 78999*****************999....7899*******99877766699********************************..99************ PP

                 EEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHHHH.HHH CS
      Iso_dh 100 pvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlksse.lwr 197
                 p+  +++    + +k      +dlvivRe+ +++Y+g+e+ ++       + + +k++s +++eri+r+afe+A+  ++kkv + +K n+lk ++ +++
  CCG91702.1  99 PCVAYHPFIFTKHPK------LDLVIVRENEEDLYSGIEHRQSID-----SYQALKVLSFQGTERIIRYAFEYARCFQRKKVSCFTKDNILKITDgMFH 186
                 *****8777777777......7******************99986.....6899*****************************************9*** PP

                 HHHHHHHCCTTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEETSS-EEEEESS---CCCTTSS-S-THHHHHH CS
      Iso_dh 198 kiveevaeeeypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslgekkvaifEavHGsapdiagkdkaNpiavilS 296
                 k++e+v + eypdie eh ++D   ++l  sp+ fdViv  Nl+GDilSD+a ++ Gs+Gl  Sa++g ++ a+fEa+HGsap+ ag+++aNp++ +l+
  CCG91702.1 187 KVFERVGQ-EYPDIEKEHWIIDIGSAKLADSPESFDVIVLANLYGDILSDVAVQIAGSVGLGSSANIG-DRYAMFEAIHGSAPRRAGQNVANPSGLLLA 283
                 *******9.***********************************************************.79**************************** PP

                 HHHHHHHTTT-HHHHHHHHHHHHHHHHHTSCCHHHCTTS..TCCCHHHHHHHHH CS
      Iso_dh 297 aalmLryslgleeaAdkiekAvekvleagivTkDlagea..akevstsefgdav 348
                 a+ mL + +g+++ Ad++++A  +++e+gi T+D+ +e    k+v t+ef d++
  CCG91702.1 284 AVQMLIH-IGQNAVADRVYNAWLRTIEEGIHTYDIFREGvsRKKVGTKEFSDQI 336
                 *******.****************************999889********9987 PP

>> TT1725  Hypothetical protein TT1725
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.0   1.1e-34   9.9e-31       1     110 []     372     481 .]     372     481 .] 0.96

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 1.1e-34
                 EEEEEEEEEEE.--S-HHHHHHHHHHHHTTTEEEEEEEETTEEEES--S------SEEEEEEEE-..SSS---HHHHHHHHHHH.HTTSEEEEEEEEEE CS
      TT1725   1 kelvGvDvfiewkekdpeelaekleklaeeelkLkmitnrGvkvyPegleetfctdhwrcRfvak..egkkvskeeileLlerlaeagldviktenLye 97 
                 kelvGvDvf+e  ++dp +la +l++++e+ l L+ i+nrG+ v+P  +ee ++   ++cRf+++  +++++s+ ++++Ll+r+++ gl+++kte Ly+
  CCG91702.1 372 KELVGVDVFVEY-SSDPAQLAGHLKDCSES-LILESIANRGMSVWPACFEEALLAGPYQCRFIKNkeNNSTISHGDVVRLLDRIQKIGLEFTKTELLYT 468
                 89*********6.99************998.********************************99767777**************************** PP

                 ETTEESB---BT- CS
      TT1725  98 fdgkrgyslgqge 110
                 f+g +gys++qge
  CCG91702.1 469 FNGMEGYSRSQGE 481
                 ************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:01.47
# Mc/sec: 990.53
//
Query:       CCG91703.1  [L=163]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1133.80
//
Query:       CCG91704.1  [L=174]
Description: hypothetical protein MFUM_200010 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 1086.92
//
Query:       CCG91705.1  [L=71]
Description: hypothetical protein MFUM_200011 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 514.16
//
Query:       CCG91706.1  [L=582]
Description: 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-20   71.5  17.2    8.9e-20   71.5  17.2    3.3  4  PMT_2      Dolichyl-phosphate-mannose-protein mannosyltransfe
  ------ inclusion threshold ------
       0.01   15.9   5.9       0.01   15.9   5.9    2.3  2  DUF1422    Protein of unknown function (DUF1422)


Domain annotation for each model (and alignments):
>> PMT_2  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   0.5         2   1.8e+04       3      14 ..      35      46 ..      33      50 .. 0.72
   2 !   71.5  17.2     1e-23   8.9e-20       1     156 [.      89     247 ..      89     249 .. 0.89
   3 ?   -1.7   3.6      0.33     3e+03     117     152 ..     375     412 ..     301     417 .. 0.68
   4 ?   -4.3   7.8         2   1.8e+04      58      70 ..     408     420 ..     366     471 .. 0.45

  Alignments for each domain:
  == domain 1  score: -4.7 bits;  conditional E-value: 2
       PMT_2  3 PPliawllalft 14
                PPl+ ++ a+f+
  CCG91706.1 35 PPLFLFFFAFFL 46
                777777777765 PP

  == domain 2  score: 71.5 bits;  conditional E-value: 1e-23
       PMT_2   1 dhPPliawllalftklfgfselairlvsalagvltilllyllarrlfgkraallaalllavvplfvalsalftpdaplvllwalalylllraleknklk 99 
                 d+PPli+wl+a+f++lfg +e+++rl+s+l ++l + +ly +  r+ + ++  +a +   v+ + ++ ++l t d +lv++ +l+ +++l +l+k++  
  CCG91706.1  89 DKPPLIYWLMAFFYQLFGVNEFSARLPSILSASLLATVLYSISNRYCS-SIRWVAPIGFIVSVQTLIHGRLATADMVLVFFGTLSQWAFLNLLKKKSHL 186
                 79*******************************************877.7888888888899999********************************99 PP

       PMT_2 100 ywllagvlfGlgflsKytaallliaall....yllisarr.ilkekkpylalllalllfspv 156
                 +++++ ++++lgfl K  ++ ++  +++    +++++ +   + +  p+l++ll+l ++s +
  CCG91706.1 187 WFFIFWISLALGFLAKGPIIWFIAFITYllhrFVFWK-KPlPIGNISPILGSLLCLTIISCW 247
                 ********************99984444445555555.556788889999999999999854 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.33
       PMT_2 117 taallliaallyllis.arr.ilkekkpylalllalll 152
                   a+l+++++++ l++ + + +  +++p+l++l++l+l
  CCG91706.1 375 LFAILALSLIFFCLYQgWPQgTSLKDIPILGGLVFLVL 412
                 33445554555666666555577778888877776665 PP

  == domain 4  score: -4.3 bits;  conditional E-value: 2
       PMT_2  58 llavvplfvalsa 70 
                    v+ lf+++++
  CCG91706.1 408 VFLVLSLFGFTLL 420
                 2222222222222 PP

>> DUF1422  Protein of unknown function (DUF1422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.58   5.2e+03      49      75 ..     101     127 ..      92     133 .. 0.66
   2 ?   15.9   5.9   1.1e-06      0.01      10     103 ..     350     445 ..     347     455 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.58
     DUF1422  49 lyqrYlnksleeglPllalacfllGvl 75 
                 +yq +  ++++  lP++  a+ l  vl
  CCG91706.1 101 FYQLFGVNEFSARLPSILSASLLATVL 127
                 577777777777788877777665544 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.1e-06
     DUF1422  10 llLaliaGlslngtlsalfsslvpfsifplialvlavyclyqrYlnksleeglPllalacfl.lGvlgys..alvraeyPeiGsnflsvvllvvlvl 103
                 ll+a  +G + +  +s lf  l    +f+++al l  +clyq + + +  +++P l   +fl l ++g++  ++++ +   i s fl ++l  +l+ 
  CCG91706.1 350 LLIAQGIGEAKQNRFSFLFA-LFFLGLFAILALSLIFFCLYQGWPQGTSLKDIPILGGLVFLvLSLFGFTllSYIKNRSLSIPSAFLMALLYALLAS 445
                 56666677788888888885.56689******************************99999835899987335789999999999999999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4192.52
//
Query:       CCG91707.1  [L=359]
Description: Multicopper oxidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-37  127.7   5.6      1e-33  115.9   1.9    2.3  2  Cu-oxidase_3  Multicopper oxidase
    1.1e-28   99.6  10.5    2.6e-19   69.3   0.2    2.8  2  Cu-oxidase_2  Multicopper oxidase
    4.8e-13   49.5   0.1      3e-10   40.4   0.0    2.4  2  Cu-oxidase    Multicopper oxidase
    6.2e-07   29.5   0.0    0.00031   20.8   0.0    3.3  2  Cupredoxin_1  Cupredoxin-like domain
    0.00046   19.7   0.2       0.17   11.3   0.0    2.2  2  SoxE          Sulfocyanin (SoxE) domain


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   1.9   2.8e-37     1e-33       8     118 ..      54     166 ..      47     167 .. 0.91
   2 !   13.2   0.1   1.9e-05     0.068      15     108 ..     203     301 ..     197     312 .. 0.77

  Alignments for each domain:
  == domain 1  score: 115.9 bits;  conditional E-value: 2.8e-37
                   ECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-SSS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE--TT.. CS
  Cu-oxidase_3   8 splggterevitvNgqfpgptievregdtvvvnvtNkldentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhshlsl.. 102
                   ++ + ++ ++ ++Ngq+pgp i+v++gd+++++vtN  + + +ihwhG+ q +t+ mDGvp  tq  i+pg++fty+f++   agt+wYh h++   
    CCG91707.1  54 TLVKDQKFHTFAFNGQVPGPLIHVKYGDDLTIKVTNLTTLPHTIHWHGILQTGTWQMDGVPNTTQPEIKPGDTFTYHFKALP-AGTYWYHCHVNVne 149
                   555555678999**********************************************************************.************95 PP

                   HHH..TT-EEEEEEE-HH CS
  Cu-oxidase_3 103 qqa..aGlaGaiiiedke 118
                   + +  +G+ G++i+++++
    CCG91707.1 150 H-VsmRGMWGPLIVDPPK 166
                   3.336*********9986 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.9e-05
                   EEEEEECTSSBS-E..EEEETT-EEEEEEEE-SSS-B-EEEET--S-GG..........GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE--TTHH CS
  Cu-oxidase_3  15 revitvNgqfpgpt..ievregdtvvvnvtNkldentsihwhGlqqrktswmDG.....vpgvtqcpiqpgesftyrftvkqqagtlwYhshlslqq 104
                   ++  t+Ng+    t  i+v++gd ++ +++   d   s+h+hG        +DG     +    +  i+pge+++  + +++  g  + h+h++ + 
    CCG91707.1 203 EDYFTINGKSYPETqpIRVKKGDFIRFRIFATSDTVHSLHIHGHVFLIG-CKDGhflpnPIEADTVLISPGERYDLFMYADN-PGRWMVHDHVDVHT 297
                   5667899876543334***************************877776.89993332212345567999999999888888.99999999999987 PP

                   HTT- CS
  Cu-oxidase_3 105 aaGl 108
                   ++G 
    CCG91707.1 298 TNGG 301
                   7774 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   5.1   3.3e-11   1.2e-07      24     135 ..      67     164 ..      43     166 .. 0.77
   2 !   69.3   0.2   7.1e-23   2.6e-19      16     126 ..     201     300 ..     189     308 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 3.3e-11
                   ETCCTTTSSEEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES.S-EEEEEEESSH CS
  Cu-oxidase_2  24 ngeefsentnvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkadnpGvwllHCHil 120
                   ng+      + i++++g+ + i ++n t+lpH++H+HG     l++g+ +          ++  +     +++pg+++++ fka  +G + +HCH+ 
    CCG91707.1  67 NGQ---VPGPLIHVKYGDDLTIKVTNLTTLPHTIHWHGI----LQTGTWQ----------MDGVPNTTQPEIKPGDTFTYHFKALPAGTYWYHCHVN 146
                   555...45689***************************8....7555555..........333333344579************************9 PP

                   ..HHHHT.T-EEEEEEEC CS
  Cu-oxidase_2 121 ..wHldq.Gmalqfvvrp 135
                     +H+++ Gm + ++v+p
    CCG91707.1 147 vnEHVSMrGMWGPLIVDP 164
                   999987549999999987 PP

  == domain 2  score: 69.3 bits;  conditional E-value: 7.1e-23
                   EEEEEEEEETCCTTTSSEEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES.S-EE CS
  Cu-oxidase_2  16 neeaseitngeefsentnvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkadnpGv 112
                   + e++++ ng+ ++ +t++i+++kg+++++ i +++++ H++H+HGh f +  +++            l np++ dtv + pg++  + + adnpG+
    CCG91707.1 201 DVEDYFTINGKSYP-ETQPIRVKKGDFIRFRIFATSDTVHSLHIHGHVFLIGCKDGHF----------LPNPIEADTVLISPGERYDLFMYADNPGR 286
                   55666666999999.************************************9999999..........99*************************** PP

                   EEEEESSHHHHHTT CS
  Cu-oxidase_2 113 wllHCHilwHldqG 126
                   w++H H++ H+++G
    CCG91707.1 287 WMVHDHVDVHTTNG 300
                   ***********998 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1    0.0018       6.6      76     138 ..      86     146 ..      52     155 .. 0.73
   2 !   40.4   0.0   8.5e-14     3e-10      35     139 ..     202     297 ..     176     316 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0018
                 EESSS-BEEEEETSB-EEEEEETCETTS...EEEESCEEE-TTEEEEEEEEE-SSSEEEEEEEEGS CS
  Cu-oxidase  76 nvsaddslnfsIeGHkltVvevDgvyve...pvevdsldIavGqrysvlvtanqapgnYwivasgr 138
                  v+++++l+++I+ H   + ++ g++     p ++++ +I +G +++  ++a  + g+Yw++++++
  CCG91707.1  86 KVTNLTTLPHTIHWH--GILQT-GTWQMdgvP-NTTQPEIKPGDTFTYHFKAL-PAGTYWYHCHVN 146
                 556666777777777..33333.333333433.556679*******9999998.49*******422 PP

  == domain 2  score: 40.4 bits;  conditional E-value: 8.5e-14
                 --SEEEETTBSS.......CTTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEETCETTS.EEEESCEEE-TTEEEEEEEEE-SSSEEEE CS
  Cu-oxidase  35 vpdavlingkggfnatladkdgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvevDgvyve.pvevdsldIavGqrysvlvtanqapgnYw 132
                 v d ++ingk+ +          +++ ++v++g+ +r+ri+  + d+ +++ I+GH + +   Dg++   p e d++ I++G+ry+  + a++ pg ++
  CCG91707.1 202 VEDYFTINGKSYP----------ETQPIRVKKGDFIRFRIFA-TSDTVHSLHIHGHVFLIGCKDGHFLPnPIEADTVLISPGERYDLFMYADN-PGRWM 288
                 5788999994443..........4789************996.569**********8888888*****88**********************9.***** PP

                 EEEE..GSS CS
  Cu-oxidase 133 ivas..grs 139
                 ++ +  +++
  CCG91707.1 289 VHDHvdVHT 297
                 *99544222 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   8.5e-08   0.00031      15      96 ..      32     147 ..      19     156 .. 0.77
   2 ?    4.4   0.0     0.011        40      36      87 ..     218     286 ..     205     300 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 8.5e-08
  Cupredoxin_1  15 aa....aaaektveitvkdg.................gfePskievkagekvklkiknkdktpeefesed.............lgeekvlapgkttt 77 
                    +     ++++t+e+t++d+                 ++    i+vk g  +++k++n  + p+++  +                ++ +++pg+t+t
    CCG91707.1  32 GFsetlHSESRTFELTIEDTiitlvkdqkfhtfafngQVPGPLIHVKYGDDLTIKVTNLTTLPHTIHWHGilqtgtwqmdgvpNTTQPEIKPGDTFT 128
                   33233467777788888877888888888888877755555679******************98888887778888888887767889********* PP

  Cupredoxin_1  78 itiaplkpGeYeftcdmhm 96 
                    ++++l +G+Y ++c  + 
    CCG91707.1 129 YHFKALPAGTYWYHCHVNV 147
                   ***************9875 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.011
  Cupredoxin_1  36 kievkagekvklkiknkdktpeefesed................lgeekv.lapgktttitiaplkpGe 87 
                    i vk+g  ++++i ++++t++++ ++                 ++ ++v + pg+ + + + +++pG+
    CCG91707.1 218 PIRVKKGDFIRFRIFATSDTVHSLHIHGhvfligckdghflpnpIEADTVlISPGERYDLFMYADNPGR 286
                   489999999999999999998888877655555545555544444444331355555555555555555 PP

>> SoxE  Sulfocyanin (SoxE) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0     0.002       7.3      17      63 ..      53      97 ..      43     107 .. 0.83
   2 !   11.3   0.0   4.8e-05      0.17      98     138 ..     119     162 ..     109     165 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.002
        SoxE 17 iylvvsssasnlfnfnGtsnGqlkiyiPagwsvlvklvneeslphnl 63
                i+lv       +f fnG   G l i++  g ++++k++n  +lph +
  CCG91707.1 53 ITLVKDQK-FHTFAFNGQVPGPL-IHVKYGDDLTIKVTNLTTLPHTI 97
                44444444.459*********98.9********************87 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.8e-05
        SoxE  98 sGissGqsasGlledlsaGtywlacgil..Gha.esGmWvdliv 138
                   i  G++ +  ++ l+aGtyw  c +    h    GmW  liv
  CCG91707.1 119 PEIKPGDTFTYHFKALPAGTYWYHCHVNvnEHVsMRGMWGPLIV 162
                 5677888888899************87522675258***99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2489.72
//
Query:       CCG91708.1  [L=232]
Description: Cytochrome c, class I [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-14   52.8   0.0    3.7e-06   28.0   0.0    2.5  2  Cytochrom_C      Cytochrome c
    1.4e-08   35.0   0.0     0.0025   18.1   0.0    2.4  2  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
     0.0002   20.9   4.4      0.053   13.0   0.0    2.8  3  FixO             Cytochrome C oxidase, mono-heme subunit/FixO
     0.0065   16.2   0.7        1.9    8.3   0.0    2.4  2  Paired_CXXCH_1   Doubled CXXCH motif (Paired_CXXCH_1)
  ------ inclusion threshold ------
        1.2    9.0   3.6       0.73    9.7   0.3    2.0  2  PADR1            PADR1 (NUC008) domain
        1.4    8.6   8.0       0.66    9.6   0.6    3.0  3  MCR              Magnetochrome domain


Domain annotation for each model (and alignments):
>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   7.5e-08   0.00023       2      92 .]      23     127 ..      22     127 .. 0.87
   2 !   28.0   0.0   1.2e-09   3.7e-06       5      91 ..     148     223 ..     145     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 7.5e-08
                  --HHHHHHTTGGGTB-SSSBSSS..........--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG..........TT--HHHHHHH CS
  Cytochrom_C   2 arGkelftanCaaCHgvegggakqgg......gptlsgaaerasaasigasvanpaavsaprddfekkkltaempark.........erlteqeiadl 84 
                  ++G ++ +++C +CH +++  ++  +      gp+l  a+ +  +++++++ + p  v  p+  f  k  ++    ++         ++l++ e++ +
   CCG91708.1  23 DDGMQILQTQCSSCHAITKPTDNSLErlwtrkGPDLYYAGLKFQKEWLVKWLQQP-TVIRPAGEFYFKHIKKGPNGDEidvsslsphPKLSPNEAESV 119
                  689999999*********999997779****************************.58888777777776666666668888999999********** PP

                  HHHHHTT- CS
  Cytochrom_C  85 aaYLkslk 92 
                  a+ L+slk
   CCG91708.1 120 ANALMSLK 127
                  **999986 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 1.2e-09
                  HHHH.H.TTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHHTT CS
  Cytochrom_C   5 kelf.t.anCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYLksl 91 
                  +  f + ++C aCH  ++gg +   gp l +a++r  +++i +++++p       ++fe +    +mp   ++l e++++ l +YL+sl
   CCG91708.1 148 AMFFgKlRGCSACHATKEGGGGLS-GPELYDAGDRLQGDFIYSFIEDP-------QKFEPHI---WMPK--LELAEADLQRLSSYLMSL 223
                  55675557******8888887765.8********************99.......3455555...6665..69**************97 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   9.8e-06     0.029       3      45 ..      22      95 ..      21     121 .. 0.61
   2 !   18.1   0.0   8.4e-07    0.0025      10      67 .]     151     220 ..     143     220 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.8e-06
  Cytochrome_CBB3  3 aaaGaalykknCasCHg....kggag..........pslagr..dwep.................dalvdiiknGk 45
                     a++G ++ + +C+sCH+    +   +          p+l     ++++                 +  +++ik+G 
       CCG91708.1 22 ADDGMQILQTQCSSCHAitkpT--DNslerlwtrkgPDLYYAglKFQKewlvkwlqqptvirpagEFYFKHIKKGP 95
                     679*************985431..1123344444446666331122233444455555666666666666777665 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 8.4e-07
  Cytochrome_CBB3  10 ykk..nCasCHg..kggag...psla..grdwepdalvdiiknGkg.....aMpafggqlsdeelwalvaYl 67 
                      + k   C++CH+  +gg+g   p+l   g+ ++ d ++++i++  +      Mp    +l +++l++l  Yl
       CCG91708.1 151 FGKlrGCSACHAtkEGGGGlsgPELYdaGDRLQGDFIYSFIEDPQKfephiWMPKL--ELAEADLQRLSSYL 220
                      555557*****97655555888999977779999*********9983332236665..68999999999987 PP

>> FixO  Cytochrome C oxidase, mono-heme subunit/FixO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.8e-05     0.053     100     130 ..      52      82 ..      44      93 .. 0.91
   2 ?   -2.7   0.3       1.1   3.4e+03      61      67 ..     156     162 ..     154     164 .. 0.86
   3 !    9.1   0.0   0.00027      0.79     102     139 ..     171     208 ..     167     228 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.8e-05
        FixO 100 kRtGPDlaRvGgkysdeWhvkHlldPrsvvp 130
                  R GPDl   G k ++eW vk l++P+ + p
  CCG91708.1  52 TRKGPDLYYAGLKFQKEWLVKWLQQPTVIRP 82 
                 499***********************98877 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.1
        FixO  61 gCyaCHs 67 
                 gC+aCH+
  CCG91708.1 156 GCSACHA 162
                 9*****7 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00027
        FixO 102 tGPDlaRvGgkysdeWhvkHlldPrsvvpesimPaykw 139
                  GP+l   G++ + ++ ++ + dP++  p+  mP+ + 
  CCG91708.1 171 SGPELYDAGDRLQGDFIYSFIEDPQKFEPHIWMPKLEL 208
                 69********************************9875 PP

>> Paired_CXXCH_1  Doubled CXXCH motif (Paired_CXXCH_1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00064       1.9       7      29 ..      31      55 ..      26      58 .. 0.62
   2 !    5.9   0.2    0.0035        11       8      16 ..     156     164 ..     152     169 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00064
  Paired_CXXCH_1  7 geClsCH...nphgsdnpkllkkakg 29
                     +C+sCH   +p     ++l  ++kg
      CCG91708.1 31 TQCSSCHaitKPTDNSLERLW-TRKG 55
                    57*****65555555555555.5555 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0035
  Paired_CXXCH_1   8 eClsCHnph 16 
                     +C++CH + 
      CCG91708.1 156 GCSACHATK 164
                     488888764 PP

>> PADR1  PADR1 (NUC008) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.44   1.3e+03      15      20 ..      32      37 ..      30      44 .. 0.80
   2 ?    9.7   0.3   0.00024      0.73       7      21 ..     148     162 ..     147     166 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.44
       PADR1 15 kCpeCk 20
                +C++C+
  CCG91708.1 32 QCSSCH 37
                799998 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00024
       PADR1   7 gmlfGalekCpeCke 21 
                 +m+fG+l  C+ C+ 
  CCG91708.1 148 AMFFGKLRGCSACHA 162
                 59***********95 PP

>> MCR  Magnetochrome domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.6   0.00022      0.66      19      28 ..      32      41 ..      30      43 .. 0.87
   2 ?   -0.2   0.0      0.25   7.5e+02       3      12 ..     100     109 ..     100     110 .. 0.86
   3 ?    1.6   0.4     0.069   2.1e+02      20      25 ..     157     162 ..     156     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00022
                -GGGT--BSS CS
         MCR 19 nCtkCHqIig 28
                 C++CH+I++
  CCG91708.1 32 QCSSCHAITK 41
                6*******97 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.25
                 B-TT---SS- CS
         MCR   3 IlagapaPHt 12 
                 I++ + +PH+
  CCG91708.1 100 IDVSSLSPHP 109
                 788999***8 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.069
                 GGGT-- CS
         MCR  20 CtkCHq 25 
                 C+ CH+
  CCG91708.1 157 CSACHA 162
                 *****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1457.57
//
Query:       CCG91709.1  [L=139]
Description: Cytochrome c family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-11   43.1   0.0    5.2e-11   42.7   0.0    1.2  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
      4e-05   24.7   0.0    7.3e-05   23.8   0.0    1.4  1  Cytochrom_C      Cytochrome c


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   5.8e-15   5.2e-11       2      67 .]      41     128 ..      40     128 .. 0.72

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 5.8e-15
  Cytochrome_CBB3   2 aaaaGaalykknCasCHg..kggag.psla.....grdwep........dalvdiiknG....kg..aMpafggqlsdeelwalvaYl 67 
                      + a+ +++y+ +C++CHg   +g g +s++     +++++p        +++ ++i++G     +   Mpa+g+ l+++e+ +l +Yl
       CCG91709.1  41 RWAKIEKVYNTYCVQCHGieRNGTGiNSKFmtvqpRDHTDPkemgkipdEEIIKAITYGgisvQKsiLMPAWGKVLTQQEIYELKDYL 128
                      568899************7655555733334444222333356666777**********554313346*****************997 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   8.1e-09   7.3e-05       3      90 ..      44     130 ..      42     131 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 8.1e-09
                  -HHHHHHTTGGGTB-SSSBSSS....--HHHHHHH..TTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHHT CS
  Cytochrom_C   3 rGkelftanCaaCHgvegggakqgggptlsgaaer..asaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYLks 90 
                  + ++++++ C++CHg+e +g+++++  ++ +++ r   + ++ g++ ++   + +++ ++  +k    mpa+ + lt+qei  l  YL++
   CCG91709.1  44 KIEKVYNTYCVQCHGIERNGTGINS--KFMTVQPRdhTDPKEMGKIPDEEIIKAITYGGISVQK-SILMPAWGKVLTQQEIYELKDYLRH 130
                  56799*99**************994..4444443300344455666666666666777777777.6777888999*************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 974.26
//
Query:       CCG91710.1  [L=327]
Description: Multicopper oxidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-16   59.0   0.0    2.6e-15   56.5   0.1    2.1  2  Cu-oxidase_3  Multicopper oxidase
    4.5e-08   32.9   0.2    1.9e-06   27.7   0.1    2.9  2  Cu-oxidase_2  Multicopper oxidase
     0.0012   18.9   0.0     0.0085   16.2   0.0    2.2  3  Cupredoxin_1  Cupredoxin-like domain
  ------ inclusion threshold ------
      0.021   15.0   0.0        1.7    8.7   0.0    3.1  3  Cu-oxidase    Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.1   5.9e-19   2.6e-15      10     118 ..      60     164 ..      42     165 .. 0.88
   2 ?   -0.6   0.0      0.29   1.3e+03      29      48 ..     221     240 ..     213     250 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 5.9e-19
                   TTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-S..SS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE--TT.. CS
  Cu-oxidase_3  10 lggterevitvNgqfpgptievregdtvvvnvtNkl..dentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhshlsl.. 102
                   ++gt+ +++t+Ngq+pgp ++v+egd v  +++N++  +++ ++ +h  q+++       +     +i+pge+ +y+f+++   g ++Yh  ++   
    CCG91710.1  60 NKGTKYPAWTFNGQVPGPLVRVTEGDIVDFTLINEItnKKSHAMDFHAAQLDAA-----KD---FGQIRPGETKHYTFKANY-PGVFFYHCGADPmv 147
                   4566789*****************************766678999999999999.....44...489***************.*******7766666 PP

                   HHH.TT-EEEEEEE-HH CS
  Cu-oxidase_3 103 qqa.aGlaGaiiiedke 118
                   q+  +G++G+ii+++k+
    CCG91710.1 148 QHIaRGMFGVIIVDPKN 164
                   7777**********986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.29
                   EEEETT-EEEEEEEE-SSS- CS
  Cu-oxidase_3  29 ievregdtvvvnvtNklden 48 
                   ++++ g++v++ ++N+ +++
    CCG91710.1 221 LQAKPGERVRIYFVNAGPNE 240
                   789999********998554 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   4.1e-10   1.9e-06      78     136 ..     102     163 ..      46     164 .. 0.84
   2 ?    1.2   0.0     0.064   2.9e+02      32      53 ..     218     239 ..     188     247 .. 0.66

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 4.1e-10
                   TCCSSGCCGSSCBSEEEE-TTEEEEEEEES.S-EEEEEEESSH...HHHHTT-EEEEEEECH CS
  Cu-oxidase_2  78 dpksynlenpvrrdtvqvppggwvairfkadnpGvwllHCHil...wHldqGmalqfvvrpd 136
                    ++    +    +d  q++pg++  + fka++pGv+++HC  +   +H  +Gm ++++v+p+
    CCG91710.1 102 AMDFHAAQLDAAKDFGQIRPGETKHYTFKANYPGVFFYHCGADpmvQHIARGMFGVIIVDPK 163
                   4444444557789999***************************999*************986 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.064
                   SEEEEEETTEEEEEEEEE-SSS CS
  Cu-oxidase_2  32 tnvitlpkgevveiviqnntkl 53 
                   t  ++++ ge+v+i++ n ++ 
    CCG91710.1 218 TTWLQAKPGERVRIYFVNAGPN 239
                   4445566666666666666655 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         2     9e+03      42      58 ..      51      67 ..      44      72 .. 0.73
   2 !   16.2   0.0   1.9e-06    0.0085      48      97 ..      94     149 ..      77     160 .. 0.79
   3 ?   -0.8   0.0      0.36   1.6e+03      37      55 ..     221     239 ..     219     246 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2
  Cupredoxin_1 42 gekvklkiknkdktpee 58
                  g+++ + i+nk+++   
    CCG91710.1 51 GKEADVVIDNKGTKYPA 67
                  67788888888887555 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.9e-06
  Cupredoxin_1  48 kiknkdktpeefesedlgeekv...lapgktttitiaplkpGeYeftcd...mhmd 97 
                   +i+nk++ ++ f + +l+  k+   + pg+t+  t+++ +pG + ++c+   m + 
    CCG91710.1  94 EITNKKSHAMDFHAAQLDAAKDfgqIRPGETKHYTFKANYPGVFFYHCGadpMVQH 149
                   4899999999******9998754449***********************5444444 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.36
  Cupredoxin_1  37 ievkagekvklkiknkdkt 55 
                   +++k ge+v++ ++n ++ 
    CCG91710.1 221 LQAKPGERVRIYFVNAGPN 239
                   5688999999999998875 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.67     3e+03     108     125 ..      35      52 ..      32      57 .. 0.76
   2 ?    2.2   0.0     0.039   1.7e+02     110     135 ..     117     141 ..      42     160 .. 0.65
   3 ?    8.7   0.0   0.00039       1.7      37      85 ..     198     244 ..     173     249 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.67
                 SCEEE-TTEEEEEEEEE- CS
  Cu-oxidase 108 dsldIavGqrysvlvtan 125
                  ++ I+++ ++sv ++ +
  CCG91710.1  35 CTISIGMAKTVSVTFHGK 52 
                 578999999999988765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.039
                 EEE-TTEEEEEEEEE-SSSEEEEEEE CS
  Cu-oxidase 110 ldIavGqrysvlvtanqapgnYwiva 135
                  +I++G++    ++an  pg +++++
  CCG91710.1 117 GQIRPGETKHYTFKANY-PGVFFYHC 141
                 36666777666666666.66666666 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00039
                 SEEEETTBSS.......CTTTTSGGGEEEEETTEEEEEEEESSS-BEEE CS
  Cu-oxidase  37 davlingkggfnatladkdgaslatltvepgktyrlriinvsaddslnf 85 
                 d+v +n   +f+++    d+ +++ l+ +pg+++r++++n++ ++  +f
  CCG91710.1 198 DFVGFNF-CKFKYDPVH-DERATTWLQAKPGERVRIYFVNAGPNEFASF 244
                 5555665.455555554.7899999***************998776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2430.51
//
Query:       CCG91711.1  [L=135]
Description: Predicted transcriptional regulator [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-18   66.9   0.1    1.4e-18   66.5   0.1    1.2  1  HxlR      HxlR-like helix-turn-helix


Domain annotation for each model (and alignments):
>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.1   7.9e-23   1.4e-18       4      85 ..      29     110 ..      26     116 .. 0.95

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 7.9e-23
                 STTHHHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHHHH CS
        HxlR   4 gkWkllilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkkwgee 85 
                  kW++ +l  + +   R +++k+ +p+i++k+L   L++L + +++er+vyp+ PpkveY+lt +G++ ++vl+ ++++ +e
  CCG91711.1  29 CKWTVSVLDLICQNICRPGQMKKSIPGITTKVLNDLLKKLCEWRIVERTVYPTLPPKVEYKLTSFGQKFMKVLKSVEELQKE 110
                 59************************************************************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 966.85
//
Query:       CCG91712.1  [L=524]
Description: Aspartate oxidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-87  293.9   0.0    2.6e-87  293.6   0.0    1.1  1  FAD_binding_2   FAD binding domain
    8.9e-11   41.9   0.0    2.5e-10   40.4   0.0    1.7  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
    3.3e-06   26.9   0.0    4.8e-06   26.4   0.0    1.3  1  DAO             FAD dependent oxidoreductase
    3.5e-05   23.2   0.1       0.14   11.4   0.0    2.3  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.013   15.7   0.2       0.77   10.0   0.3    2.7  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.6   0.0   7.1e-91   2.6e-87       1     417 []       7     378 ..       7     378 .. 0.96

  Alignments for each domain:
  == domain 1  score: 293.6 bits;  conditional E-value: 7.1e-91
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    D +ViG+G+AGL  Ale ++ G+ v v+ k++ + +++ ++qGgi+ v+ ++q      ds e+h+ dtlka+d+l+++++v+ fve+ap  ++ L
     CCG91712.1   7 DFLVIGGGIAGLFFALETSRFGR-VDVLLKGSFTHSSSWYAQGGIACVS-SPQ------DSFESHISDTLKAGDGLCKADVVKSFVEEAPMRIADL 94 
                    88****************99998.999999999****************.555......9************************************ PP

                    HHTT----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEE CS
  FAD_binding_2  97 eelgvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlvesarkag.vdfqerteadeLivedgrvtGavvenpesgrevrir 191
                     +lgvpf+++++g +d+    g+s++ r+ h + d+      tg a++++l ++a+k++ + ++e+  a +Li+ d+ + Ga+v +++++ ++ + 
     CCG91712.1  95 IRLGVPFTKNAEGNYDLGLEAGHSHR-RIYH-VKDH------TGMAIIEALKKEAKKRKqIILWENQWAIDLIIIDKICFGAYVFDKTKKITRLFI 182
                    **************************.9999.****......****************9**************************66555555666 PP

                    ESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT-EEE-TTSSBTH. CS
  FAD_binding_2 192 akavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgilvdkdGrrFm. 286
                    + +++l tgG+g+           + +ttn+  +tGdg+a+a+raga l++  me++qfhPt+ +  +++++ Li+ea+rgeG+ +++++G+ F  
     CCG91712.1 183 SPHTLLSTGGCGG----------IYLHTTNPSSATGDGIAMAYRAGALLKN--MEMIQFHPTCFF-QQSSQKFLISEAVRGEGAKIINQSGEHFLk 265
                    66**********9..........****************************..************.56666668********************** PP

                    .....GGGS-HHHHHHHHH.HHHHTTTSCCBEEEE-TT.SSHHHHHHHSHHHHHHHHHCCT......S-TTTSEEE.......EEEEEEEES-EEE CS
  FAD_binding_2 287 .....nelasrdvvsrailekeiaeggseanvyldashgldaegleatleaineeaangldkdfgrgidpadrpipgpfyavkvvpaqhytmgGve 377
                         +ela+rd+vsrai+  e++e++  ++vyld+++  ++e le++++ i   +    +      id  +  +p       + pa+hy++gGv+
     CCG91712.1 266 hadprGELAPRDIVSRAIF-LEMKEKNI-PYVYLDIRG-KQREWLEERFPYIFSYCLS-QG------IDMSKDLVP-------IAPAAHYQCGGVA 344
                    *******************.********.*********.************9999999.67......9********.......************* PP

                    BETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 378 tdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    td+ gr+       i GL+AaGeva++g+hganrl++nsl
     CCG91712.1 345 TDTYGRT------SIVGLWAAGEVACTGFHGANRLASNSL 378
                    *******......*************************98 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   7.1e-14   2.5e-10       5      91 ..     431     512 ..     428     518 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 7.1e-14
                     HHHHHHHSSSSB-HHHHHHHHHHHHHHHHHHTTB--S---SSS-HHHHHHH..HHHHHHHHHHHHHHHHHH--S-BTTBEBTTS-SEET CS
  Succ_DH_flav_C   5 gkimqkkvgvfRteegLkealkelkelrerlknvkvtdkskvaNqelveal..elanllelAeaiaksAlaRkESrGaHaredfperdD 91 
                     +k+m++ vg++R+ +gL++a ke+    + +kn   ++k++    e+v  l  + +n+  +A +i++sAl+RkESrGaH+  d+p++ D
      CCG91712.1 431 RKLMWDCVGIVRSVAGLEKAKKEIGLKVDFFKN---KEKKE----EIVSLLevKAKNIALVAAVIIESALQRKESRGAHWIVDYPKKLD 512
                     799*******************99754444553...33333....344444004589****************************9876 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.3e-09   4.8e-06       1      89 [.       7     125 ..       7     170 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.3e-09
                 EEEEECTSHHHHHHHHHHHHTT.EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH..............................HHHHHHHHHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg.VtllekgdiagsgaSgrnsgllhsglrylpeas..............................elarlslealeel 68 
                 d ++iGGGi+Gl+ A+e +r g V +l kg  + + +S+ ++g ++  ++  p+ s                              ++a+l + ++ + 
  CCG91712.1   7 DFLVIGGGIAGLFFALETSRFGrVDVLLKG-SFTHSSSWYAQGGIAC-VS-SPQDSfeshisdtlkagdglckadvvksfveeapmRIADLIRLGVPFT 102
                 789***************999*********.6666**********99.54.444444667788888888888886655555555555555555555555 PP

                 HHHHHHH..SSTTSEEEEEEEEE CS
         DAO  69 releeel..gididyrrtGllsl 89 
                 +  e+++  g++ ++  +  +++
  CCG91712.1 103 KNAEGNYdlGLEAGHSHRRIYHV 125
                 44444321133344444444444 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00013      0.46       2      29 ..       7      35 ..       6      93 .. 0.78
   2 !   11.4   0.0   3.9e-05      0.14     236     280 ..     322     375 ..     316     389 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00013
                 SEEEE--SHHHHHHHHHHHH.HTS-EEEE CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq.agakvtlv 29
                 d +viGgG+AGl +al+ ++   ++v+l 
   CCG91712.1  7 DFLVIGGGIAGLFFALETSRfGRVDVLLK 35
                 678***************99446666654 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.9e-05
                  -EEES-HHCS..HCCT-EEEETTEEE--TTSBESSTTEEE-GGGC..........TE CS
                  xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xx RF
  Pyr_redox_2 236 Gvrpstelle..eklglelderggivvdeflrtnvpgiyaiGDva..........gg 280
                  G+  s++l++   ++  +    gg+ +d ++rt++ g++a+G va            
   CCG91712.1 322 GIDMSKDLVPiaPAAHYQ---CGGVATDTYGRTSIVGLWAAGEVActgfhganrlAS 375
                  555555555443333444...49**********************876655544444 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00021      0.77       1      24 [.      10      34 ..      10      37 .. 0.85
   2 ?    2.6   0.0     0.045   1.6e+02       7      30 ..     129     155 ..     127     156 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00021
                   EE--SHHHHHHHHHHHCC.TEEEEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvll 24
                   ++G+G++Gl +A + ++  ++dvll
     CCG91712.1 10 VIGGGIAGLFFALETSRFgRVDVLL 34
                   8***********9999974557775 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.045
                    HHHHHHHHHHCC...TEEEEEE-SSSS CS
  NAD_binding_8   7 sGlvaAylLaka...gfdvlllekrdr 30 
                    +G+++  +L+k+   ++++ l+e+++ 
     CCG91712.1 129 TGMAIIEALKKEakkRKQIILWENQWA 155
                    79*******996655779******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3779.06
//
Query:       CCG91713.1  [L=591]
Description: Inner membrane protein oxaA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-55  187.6   6.1    2.1e-55  187.1   6.1    1.2  1  60KD_IMP       60Kd inner membrane protein
    1.4e-19   71.1   0.0      5e-19   69.3   0.0    1.9  1  YidC_periplas  YidC periplasmic domain


Domain annotation for each model (and alignments):
>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.1   6.1   2.4e-59   2.1e-55       1     162 [.     382     565 ..     382     569 .. 0.92

  Alignments for each domain:
  == domain 1  score: 187.1 bits;  conditional E-value: 2.4e-59
    60KD_IMP   1 yglaIilltiivrlillpltlkqlkssakmqelqPelkeiqekykkdkqklqqemmklYkkegvnplaGclplLiqlpifialyrvlrsla.....sf. 93 
                 ygl Iil+t++++ i++pl+ +  +++++mq+l+P+lke+q++yk++++k+q+emmklY+++gvnpl+Gclp+L+q+pifi++y++l+        sf 
  CCG91713.1 382 YGLDIILFTLLLKGIFWPLQSSANRNMKAMQALSPKLKELQARYKDQPDKMQAEMMKLYREYGVNPLGGCLPMLVQVPIFIGFYTMLQGSVelrnqSFl 480
                 89******************************************9999****************************************96667665448 PP

    60KD_IMP  94 wikdLsapd..............lpillavttflqqklsksk....kmqkmmlyvmplmilffslsfpaglvlYwlvsnllsiaqql 162
                 wikdL++pd              lp++++ t++l +++++++    +  k++  +mp+++l+f+++f+++l+lYw+v+nl++i+q++
  CCG91713.1 481 WIKDLTQPDtvyhlpmlnldinpLPLIMVGTQILLSRMTPQAsdnpQ-LKVF-QWMPVFFLVFFYNFASALSLYWTVNNLVTIVQTY 565
                 9**************************************66433332.3444.79******************************97 PP

>> YidC_periplas  YidC periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   5.6e-23     5e-19       5     283 .]      88     371 ..      86     371 .. 0.74

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 5.6e-23
                    E-SS-EEEEETBTTEEEEEEEEEEESSTT-SS.EEEECEEETTEEEEEEEEEESTT-.TTSGGS--B-B-S-SEEE--TT-SEEEEEEEEE-TTS- CS
  YidC_periplas   5 dtdvlegsislkGgriddleLkkYketldkdskpveLlspegaetyvaqsglvgagggkaldprktvftaeegeyelaeltdelpvtLtwdngnGl 100
                    ++d++++ + + Gg i+ +eLk++   + ++ ++  Ll+  ++e  +  sg+ g    k    + + +++e+         +e +v ++ d   G+
     CCG91713.1  88 ENDKIRVALTSWGGAIQNIELKEHFFRT-PKGRENILLNRFDEEPLLNLSGWDG----K---YHLSGYQSET---------KEGKVIFKRDLSGGV 166
                    89**********************5444.4444556666666666888999993....3...2333455555.........5689*********** PP

                    EEEEEEEEETT-SEEEEEEEEE--SSS-EEEEEEEEEEEE.--.----------.--EEEEEEETTTCCEEEEHHHHHT..............T-- CS
  YidC_periplas 101 tftktytldrdsYlitvtdeveNtsgapvtlapygqlkrd.peeaseeesmfai.tyegaagvtdeeklqkvkfkdlekd............kkak 182
                    +++++++l  ++Y+i +++++ N s+apv+l +  +l+   +++ +  ++  ai +     + ++  ++ ++ + d +              +  +
     CCG91713.1 167 NLERVFSLG-QDYQIIMEQRLVNRSSAPVSLPAS-RLNIGlASPIH--AK-DAIqNIAANWLTLKGARFGRIGLPDFNPAgflglfywrgprTVIT 257
                    *********.*********************665.67777433332..23.334344444444555788889999987668999999997664444 PP

                    -EEEEES-EEEEEETTEEEEEEEE.SSSEEEEEEEEEE.......T............EEEEEEEE.--EEE-TT-EEEEEEEEEEEE--HHHHHH CS
  YidC_periplas 183 kekktgggWvamtqkYFlsAlipdqdaetnefyarkkk......kd............lyqagylsapavtvapgasasvtarlfaGPkevktlka 260
                    + +++   W+a++++YF+ ++ip+++     f+ ++        ++            ++ a++     ++++p++  sv+++++ GPke+++l +
     CCG91713.1 258 SPTESLR-WAAVKNQYFTIVVIPPSS--LPPFQIEAIPvelsqfPSeqegqnripvglKAWARF---SELSLEPNSILSVQFKVYSGPKEYARLHK 347
                    4444555.***************933..344444444433433311345556777644444444...479************************99 PP

                    H.TTGGGHHHHHHHHHHTSHHHHH CS
  YidC_periplas 261 i.pgLdlavDyGwltfitkplfwl 283
                    + ++ d+++ yG+  ++ kpl+w+
     CCG91713.1 348 LgDHIDKVMEYGMWGWVVKPLVWC 371
                    99********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 3754.78
//
Query:       CCG91714.1  [L=88]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-24   85.3   1.6    2.2e-24   85.1   1.6    1.1  1  YidD      Putative membrane protein insertion efficiency fact


Domain annotation for each model (and alignments):
>> YidD  Putative membrane protein insertion efficiency factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   1.6   1.2e-28   2.2e-24       1      66 []       2      73 ..       2      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 1.2e-28
        YidD  1 kkllialirlYqkvisp...ll...ksCrfyptCSeYaleaiekyGllkGlllalkRilrCnplskgGyDpv 66
                kk++ +l+ +Y++ +s    ++     Cr+yptCS+Y+ ea++k+G++ Gllla kR+lrC+p++  G+Dpv
  CCG91714.1  2 KKIIFFLLSFYRYGLSSirqTFgiyGVCRYYPTCSQYCKEAVQKHGVIVGLLLASKRLLRCHPWGGRGWDPV 73
                68999**********99654226789*********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 649.72
//
Query:       CCG91715.1  [L=128]
Description: Ribonuclease P protein component (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-18   66.0   0.5    3.1e-18   65.9   0.5    1.0  1  Ribonuclease_P  Ribonuclease P
  ------ inclusion threshold ------
      0.053   12.9   0.0      0.068   12.6   0.0    1.1  1  RNase_E_G       Ribonuclease E/G family


Domain annotation for each model (and alignments):
>> Ribonuclease_P  Ribonuclease P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.5   3.5e-22   3.1e-18       3     108 ..      16     120 ..      14     122 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 3.5e-22
  Ribonuclease_P   3 kkerLkkraeFqavfregkrvaskdlvlyalknsleksslrlGlsvskkvgkAvvRNrikRllReafrlnkdelpagldlvviakkgaaeadfae 97 
                     ++   kk++e+   f++gk+++s  ++l++l+++ ++s +++ ++vskk+  A +RN ikR++Re+fr+  +   a + +  iak+++ +a+f+e
      CCG91715.1  16 RRLIAKKKDEIALFFSHGKKFSSPFFILFVLPRE-TDSFPKVFFAVSKKIRGAAKRNLIKRRMREIFRQYAPFKLAPYSFGWIAKERVLTANFKE 109
                     55556899************************55.55569******************************997777******************* PP

  Ribonuclease_P  98 lekelekllkk 108
                     ++k++ +l +k
      CCG91715.1 110 MRKDMIELGEK 120
                     ****9988766 PP

>> RNase_E_G  Ribonuclease E/G family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.6e-06     0.068      16      69 ..      58     120 ..      50     127 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.6e-06
   RNase_E_G  16 vgvSkkiedeeererlkelleelk.........peevGlIvRtaaegaseeelekdleelkkk 69 
                  +vSkki+ +++r+ +k+ ++e+          p ++G+I + +   a+ +e++kd+ el +k
  CCG91715.1  58 FAVSKKIRGAAKRNLIKRRMREIFrqyapfklaPYSFGWIAKERVLTANFKEMRKDMIELGEK 120
                 68***********999999999886777777766699********************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1011.09
//
Query:       CCG91716.1  [L=358]
Description: Geranylgeranyl pyrophosphate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-61  206.2   0.0    6.1e-61  205.7   0.0    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.7   0.0   3.4e-65   6.1e-61       8     243 ..      64     290 ..      60     300 .. 0.95

  Alignments for each domain:
  == domain 1  score: 205.7 bits;  conditional E-value: 3.4e-65
                      HHHHHHSSS--HHHHHHHHHHHHHSCGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt   8 leylveagGKrlRpllvllaaealkeeeeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrlvGnklAindgdfllarafellakl 101
                      ++y++e++GKr+Rpllvll+a+  +     +e+++ la++ve++h a+LvhDDi D +++RRG p++ +++G +++++ gd l+a+a++++ +l
       CCG91716.1  64 FRYVLESEGKRIRPLLVLLSAKGSG---GIIEDHLYLAVVVEMIHLATLVHDDILDGASMRRGLPSVTSRWGSEISVLLGDSLFAQALKVCCRL 154
                      78***********************...47899************************************************************* PP

                      HSTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt 102 fekslellelfsevllqtveGqlldleeekdddlskfsleeyleivkyKTaylfalpvalaallagasdeelealkdiglelGlaFQiqDDylD 195
                         ++++++ +++ ++ ++ G++l+++ + d +l    +eeyl+i+++KT+ lf++p++laa l  as++  eal ++g+ lG  +Qi DD+lD
       CCG91716.1 155 ---HPDIIKSVANGVCVVCSGEILQTRRRFDWNLL---EEEYLKIIQMKTGELFRIPCELAARLNSASQSISEALGRYGQALGSSYQIYDDCLD 242
                      ...789********************988888888...*****************************99999********************** PP

                      HHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHTTSSH CS
  polyprenyl_synt 196 lfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvlkeilgkka 243
                      lfg++e++gK +gtD+  gk tlpil+ +++ s+e ++++ ei+++  
       CCG91716.1 243 LFGNEENVGKTLGTDLGGGKLTLPILYLYQQGSEEMKRTIVEIFENGV 290
                      ************************************999999998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2926.94
//
Query:       CCG91717.1  [L=75]
Description: PurA family ssDNA and RNA-binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-16   58.3   0.0    7.2e-16   58.2   0.0    1.0  1  PurA      PurA ssDNA and RNA-binding protein
  ------ inclusion threshold ------
      0.032   14.4   0.4      0.085   13.0   0.4    1.7  1  DUF3276   Protein of unknown function (DUF3276)


Domain annotation for each model (and alignments):
>> PurA  PurA ssDNA and RNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0     8e-20   7.2e-16      80     147 ..       5      67 ..       1      74 [. 0.90

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 8e-20
        PurA  80 ssklksellvrdnrkyyldlkenqrGrflriaqlvmrgksrgqrqqialPaqGlielrdalteliedy 147
                 ++++kse ++++ + +++dlken rGrflri+  v      g r  i++Pa Gl e+r+al  +i+  
  CCG91717.1   5 QKNIKSEKITVERKNFFFDLKENGRGRFLRITEDVR-----GRRDAIIIPAPGLEEFRKALDSMIDAC 67 
                 578****************************99876.....69*******************999865 PP

>> DUF3276  Protein of unknown function (DUF3276)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   9.5e-06     0.085       8      46 ..       4      41 ..       1      74 [. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.5e-06
     DUF3276  8 dkeevfskvlkAGkRiYflDvkktkkddyyltitEskkv 46
                ++ ++ s ++   ++ +f+D k++ ++  +l itE  + 
  CCG91717.1  4 EQKNIKSEKITVERKNFFFDLKENGRGR-FLRITEDVRG 41
                788999*****************99875.8****98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 578.45
//
Query:       CCG91718.1  [L=405]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00022   21.6   0.0    0.00053   20.4   0.0    1.6  1  TonB_C         Gram-negative bacterial TonB protein C-termina
  ------ inclusion threshold ------
        2.7    6.4  17.9        3.8    5.9  17.9    1.1  1  Borrelia_P83   Borrelia P83/100 protein
        5.5    7.0  14.6          9    6.3  14.6    1.2  1  Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region


Domain annotation for each model (and alignments):
>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   8.9e-08   0.00053      16      63 ..     338     387 ..     333     403 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 8.9e-08
                 EEEEEEEEE-TTSBEEEEEEEEESS.SSCSHHHHHHHHTT.-EE-TT--E CS
      TonB_C  16 GtvtveftidpdGnvtnvkvvkssg.seiLdkaAleavrk.wkfkpapkn 63 
                 G+v+v+f +++dG++++++v++++g +e+L   +l+ +r  ++f p+ + 
  CCG91718.1 338 GSVRVRFYVQSDGTISSLQVISEDGiTEVLRSISLDSIRLsAPFGPFSEA 387
                 9************************999************9999998765 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  17.9   0.00063       3.8     219     345 ..     133     266 ..     125     273 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00063
  Borrelia_P83 219 keeldkkqkdadkakkkadtaedn.a.dkqrkevrek..lqeaknlpepadvsskkedkkvaeekkreiekaqkeikkkdeeakkakdakaedl... 308
                   k+    kq++ ++++++a  ++++ + +k ++e++e+  ++++++l  +++ +s+ e+   +++  + +ek  kei+k +ee +k +d + + l   
    CCG91718.1 133 KQAPPTKQIEQENQQNQASSNNEAkIeNKSKEETKENllQKDNQKLTTKSEETSPTEKPS-EDNPSKVLEKLLKEINKPSEEFLKKEDPNGDPLmpf 228
                   555667888888888887665433132567788888733456888888888888776654.569999*********************996665222 PP

  Borrelia_P83 309 .kkeskaeekeaedkeleakkereevaeDlqkikeevk 345
                    +k  k+ +k +++ +  + +e  + a+ +   +++  
    CCG91718.1 229 qNKTPKEPSKITDKETSKSATEASPTAKQTDSSQPKAS 266
                   13446777777777777788888887777766666555 PP

>> Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  14.6    0.0015         9      72     190 ..     131     252 ..     118     282 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0015
  Asp-B-Hydro_N  72 tsessvpe..eeaevvaeeeeqlaeekekqkveeevkEqlkkvkeeivvkeeeeegieeepqleeekkllkedsderqeeleagkvkeevE..esl 163
                    ++++++p    e+e ++++     e k ++k +ee+kE+l +  ++  ++++ee  ++e+p +++  k+l++   e ++++e   +ke+ +    +
     CCG91718.1 131 AQKQAPPTkqIEQENQQNQASSNNEAKIENKSKEETKENLLQKDNQKLTTKSEETSPTEKPSEDNPSKVLEKLLKEINKPSEEFLKKEDPNgdPLM 226
                    445555552234444444444555556666777777777777777777777899999999999999999999888888888877666664310223 PP

  Asp-B-Hydro_N 164 kveetvseeakkdmkekaseeeneksk 190
                    +  + + +e +k + +k +++ + + +
     CCG91718.1 227 PFQNKTPKEPSK-ITDKETSKSATEAS 252
                    333333333333.33333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2444  (0.136315); expected 358.6 (0.02)
Passed bias filter:                      871  (0.0485805); expected 358.6 (0.02)
Passed Vit filter:                       158  (0.00881254); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.44
# Mc/sec: 2747.42
//
Query:       CCG91719.1  [L=224]
Description: MotA/TolQ/ExbB proton channel family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-27   96.1   0.9    1.7e-27   95.7   0.9    1.2  1  MotA_ExbB     MotA/TolQ/ExbB proton channel family
  ------ inclusion threshold ------
       0.16   12.5   0.1       0.25   11.8   0.1    1.4  1  Ribosomal_S9  Ribosomal protein S9/S16


Domain annotation for each model (and alignments):
>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.9   1.9e-31   1.7e-27      23     126 ..     101     205 ..      82     206 .. 0.90

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 1.9e-31
                 HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS.SGGCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB  23 epeelrraleealsreeerlekglsilatigslaPllGLlGTVlGlieafqaladagsa.dlakvapgiaeALiaTalGlvvAipavlaynklkrkver 120
                 ++ e  +al+ +++ e+++lekgl il++i+++ PllGLlGT+ Gli++f ++++ g a + a++a+gi+eAL +T++Gl +A+p+++a+++++rkve+
  CCG91719.1 101 SKFENSEALQVKARSEIAQLEKGLVILEIIVGIGPLLGLLGTLSGLITIFGNVGTHGMAtQGAAIAHGISEALHTTLAGLGIAVPCLIAHSLFSRKVEA 199
                 55667899**********************************************99999889************************************* PP

                 HHHHHX CS
   MotA_ExbB 121 lvlele 126
                    e+e
  CCG91719.1 200 YAIEME 205
                 *99998 PP

>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   2.8e-05      0.25      47      80 ..     141     175 ..      99     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.8e-05
                   TTSSS.EEEEEEEESS-HHHHHHHHHHHHHHHHHH CS
  Ribosomal_S9  47 gllgk.fdvfvkvkgGGlsgqaeAirlgiaraLva 80 
                   g+l+  + +f +v   G+  q +Ai++gi++aL +
    CCG91719.1 141 GTLSGlITIFGNVGTHGMATQGAAIAHGISEALHT 175
                   44444488999999******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1755.05
//
Query:       CCG91720.1  [L=140]
Description: Biopolymer transport protein ExbD/TolR [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-27   94.1   0.6    8.1e-27   94.0   0.6    1.0  1  ExbD      Biopolymer transport protein ExbD/TolR
  ------ inclusion threshold ------
      0.088   13.0   0.2       0.11   12.7   0.2    1.1  1  DUF4330   Domain of unknown function (DUF4330)


Domain annotation for each model (and alignments):
>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.6     9e-31   8.1e-27       5     123 ..      10     127 ..       6     134 .. 0.95

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 9e-31
        ExbD   5 saeinltpmiDvvflLLifFlvtaklkkpepl.evdlPsssstqkeveekelirisisadgsiyldkkavsveelaqklkerkakppdkltvaikadkd 102
                  + inl+++iD++ ++L+fF+vt++++++ep+ ++dlP+s+ ++  v  + + +i +++d++i+ld k+v+ e l + lk+  +++pd  ++a+ka+k+
  CCG91720.1  10 RPLINLVSLIDILSIVLLFFVVTTTFQREEPAvKIDLPKSVRSK-PVRSDLPKIIFVTEDKKIFLDNKPVEPEHLGELLKKTITENPDT-KIALKASKN 106
                 5779**************************999***********.7*******************************************.********* PP

        ExbD 103 vsygklvevldtlkkagiekv 123
                 ++++ +++v+d++k agi ++
  CCG91720.1 107 APFEIIIQVMDAVKFAGIPNL 127
                 ******************986 PP

>> DUF4330  Domain of unknown function (DUF4330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   1.3e-05      0.11      10     107 ..      12     117 ..       7     129 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
     DUF4330  10 lfgkvnilDllailvilavivgiflkpgtsgsv...aqaeaaatkpve.....vdvvvrglev..peelak.vkegektniiirnqPagdveikdvkvl 97 
                 l+  v+++D+l i++++ v+   f       ++   + +     kpv+     + +v + +++  +++ ++ ++ ge ++ +i+ +P +++ +k+ k  
  CCG91720.1  12 LINLVSLIDILSIVLLFFVVTTTFQREEPAVKIdlpKSVR---SKPVRsdlpkIIFVTEDKKIflDNKPVEpEHLGELLKKTITENPDTKIALKASKNA 107
                 8899**************9999999888884442444444...55555555446666666666999*****77**********************9999 PP

     DUF4330  98 prkvvvpqpd 107
                 p ++  + +d
  CCG91720.1 108 PFEIIIQVMD 117
                 9998766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 971.49
//
Query:       CCG91721.1  [L=190]
Description: Peptide deformylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-44  150.3   0.0    4.2e-44  149.9   0.0    1.2  1  Pep_deformylase  Polypeptide deformylase


Domain annotation for each model (and alignments):
>> Pep_deformylase  Polypeptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   2.4e-48   4.2e-44       2     158 ..       3     167 ..       2     168 .. 0.94

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 2.4e-48
                      GG---TT-GGGCS--B---BSSHHHHHHHHHHHHHHHHHCT-SEEEGGGGT--BSEEEEECCSS-ETT....S..........EEEEEEEEEEE CS
  Pep_deformylase   2 kkivkvgdpvLrekakpvekfeskelekllekmletmkeakgvgLAApQigvnkrlfvielpseeeeeeenke..........ltvliNPkits 85 
                       +i+ +++p+Lr++ k ++ f+++ l++l+++mletm  +kgvgLAA Qig   +++v++++ ++   +              +  liNP + +
       CCG91721.1   3 LNIILYDNPILRKRGKAIDAFDQQ-LKDLASDMLETMAFYKGVGLAAQQIGKALQFAVVDVSASKIPSSLLIGgkpvpveehmPLFLINPTL-K 94 
                      689*******************88.***************************************99766544388899999999********.8 PP

                      CSCEEECCEE--TTSTT--CEEEEESCEEEEEE-TTS-EEEEEEEHHHHHHHHHHHHHCTT--GGGGC-TTXX CS
  Pep_deformylase  86 kseetitdeEgClSvpgieakVeRskrikvkyldltgkeveleaegllArvlqHEiDhlnGklfidridksek 158
                        + ++ + EgClS+pg++ +V+Rskr++v+ +dl+gk+ + ea g+lA+++qHE+Dhl+Gklfid ++ +++
       CCG91721.1  95 YTRSKEISNEGCLSFPGLRIDVPRSKRVEVNTYDLNGKPLKFEAGGFLAIAIQHEYDHLQGKLFIDYLSAEQR 167
                      888888999***********************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1450.49
//
Query:       CCG91722.1  [L=90]
Description: Glutaredoxin [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-13   48.3   0.0    1.1e-12   47.9   0.0    1.2  1  Glutaredoxin  Glutaredoxin
    7.2e-08   32.7   0.1    7.8e-08   32.6   0.1    1.3  1  DUF836        Glutaredoxin-like domain (DUF836)
    0.00031   21.1   0.0    0.00038   20.8   0.0    1.1  1  GST_N_3       Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   1.9e-16   1.1e-12       1      53 [.       6      58 ..       6      65 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 1.9e-16
                  EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEE CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqv 53
                  ++l++k +Cp+C  a +lLk++g+ ++ idv+kd++  + + ++sg++  P++
    CCG91722.1  6 IILYVKEGCPWCEEAEDLLKKFGITYQRIDVLKDKASYQRMVKISGQSRAPTL 58
                  789************************************************98 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   1.3e-11   7.8e-08       1      47 [.       5      44 ..       5      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.3e-11
                -EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEETTT-CCCHCCCC CS
      DUF836  1 kltLyskpgChlCeqakekLkelkleegleleviDIakdeeleakYg 47
                k++Ly+k+gC+ Ce+a+++Lk++    g++ ++iD++kd+     Y+
  CCG91722.1  5 KIILYVKEGCPWCEEAEDLLKKF----GITYQRIDVLKDKA---SYQ 44
                69*******************66....68889*****9987...333 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   6.3e-08   0.00038       1      59 [.       8      67 ..       8      75 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 6.3e-08
                EES-TTSHHHHHHHHHHHHHT--EEEE---TTTT.HHHHHHH-TT--SSEEETTS-EEES CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvevvevtpgeh.deellaknplgkvPvLeddgealtd 59
                Ly  +++p++ ++  +L+  g+ ++  +v +++   +++ +++++ ++P+Le  +++l d
  CCG91722.1  8 LYVKEGCPWCEEAEDLLKKFGITYQRIDVLKDKAsYQRMVKISGQSRAPTLEWEDDVLAD 67
                9****************************9999779***************977777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 685.91
//
Query:       CCG91723.1  [L=265]
Description: Predicted heme peroxidase involved in anaerobic stress response [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-50  170.3   0.2    5.4e-50  169.7   0.2    1.2  1  Chlor_dismutase  Chlorite dismutase


Domain annotation for each model (and alignments):
>> Chlor_dismutase  Chlorite dismutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.7   0.2     3e-54   5.4e-50      12     192 ..      41     252 ..      33     254 .. 0.92

  Alignments for each domain:
  == domain 1  score: 169.7 bits;  conditional E-value: 3e-54
                      HHH..TTSCEEEEEEEETSTTTT-SEEEEEEESSHHHHHHHHHHHHHSTGGGGEEEEEEEEEEEEEESS......................... CS
  Chlor_dismutase  12 lee..aeegvlralysvlGlradaDlmlwllretleelqeaerelrrtalgkvlepaysyvsvtelseY......................... 78 
                      +++  +eeg+++a++ +l +    D+ +++l+++l+++qe+e++l +t   +  +  ys++s+te+seY                         
       CCG91723.1  41 VDRikNEEGFQIATFCMLCHC---DIGFMILGPDLHKMQEFEKRLTKTFSLDGWNLHYSFFSMTEKSEYtttraefeeelissgiqpgtedfln 131
                      555334445666666666665...********************************************************************** PP

                      ..SSS-GGGHHHCHHHHS----SSSEEEEEEEEE-EE....GGGS-HHHHHHHHHHHHHHHHGC.TTEEEEEEE-TTTSSSSEEEEEEESSTHH CS
  Chlor_dismutase  79 ..keedeenkshvearlapelpkkkyvcvYPmsksre....WYllpeeeRrelmaeHgeigrkY.gkVrqiitgsfGldDyEwgvaleaddlee 165
                        +  +++++ ++  rl+p+lp+  ++ +YPm k+re    WY+l ++eR+elm+ H  +grkY g+V q+itgs+GldD+Ew v l a+d+ +
       CCG91723.1 132 rmSAFEKTMEYYTTVRLYPTLPNYPFFSFYPMRKKREssqnWYALGFKERKELMKGHAIVGRKYsGRVVQYITGSTGLDDWEWAVSLYANDPYD 225
                      9877777888888********************************************************************************* PP

                      HHHHHHHHCTSHHHHHHEEE-S-EEEE CS
  Chlor_dismutase 166 fkdlvyelRfdeasakvaeegpfyvGr 192
                      +k +vye+Rfd +sak+ae+g+fy G 
       CCG91723.1 226 IKSIVYEMRFDPVSAKFAEFGSFYCGL 252
                      *************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2087.33
//
Query:       CCG91724.1  [L=327]
Description: putative lipopolysaccharide transport protein B (ABC superfamily, atp_bind) (LptB) (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-36  125.5   0.0    4.2e-36  124.5   0.0    1.5  1  ABC_tran  ABC transporter
    1.9e-07   31.2   2.5     0.0011   18.8   0.3    2.2  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
  ------ inclusion threshold ------
      0.056   12.6   0.4       0.73    9.0   0.4    2.1  1  NB-ARC    NB-ARC domain
        0.1   12.8   0.1       0.78   10.0   0.1    2.2  1  SbcCD_C   Putative exonuclease SbcCD, C subunit
       0.13   11.8   0.1       0.26   10.9   0.1    1.4  1  SRP54     SRP54-type protein, GTPase domain
       0.14   11.9   0.1       0.32   10.8   0.1    1.5  1  AAA_29    P-loop containing region of AAA domain
       0.22   12.0   2.3       0.24   11.9   0.5    1.9  2  AAA_23    AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.0   1.6e-39   4.2e-36       2     136 ..     107     251 ..     106     252 .. 0.95

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 1.6e-39
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 + v+l +++ge+v+++G+nGaGK+t + +l gl++pt+G++ ++++d+++    +++rk +g+lpqe+++f++ltv+en             e+  ++e
  CCG91724.1 107 NGVDLVVNKGEIVGLLGPNGAGKTTTFYMLVGLVTPTKGKVFIENEDVTKmPMYKRARKGLGYLPQEESVFRKLTVEENlmailefldiskeERMHRLE 205
                 78999******************************************9998999**********************************977666667** PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++ +gl+++k+t++     sLSgG+k+r+++aral + p++lllDEp+
  CCG91724.1 206 ELIRDFGLEKVKKTIA----MSLSGGEKRRLSIARALTTSPSILLLDEPF 251
                 ***************9....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   3.8e-05     0.098       2      22 ..     119     139 ..     118     167 .. 0.80
   2 !   18.8   0.3   4.4e-07    0.0011     224     297 ..     211     281 ..     163     285 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.8e-05
      AAA_21   2 nvliGpNgsGKSnLLdaldll 22 
                  +l GpNg+GK++ ++ l +l
  CCG91724.1 119 VGLLGPNGAGKTTTFYMLVGL 139
                 689***********9999877 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 4.4e-07
      AAA_21 224 lengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 +  ++ +++ a +lS G kr l ++ al   +   s+ll+DEp +g +P ++  l +l+ +l+++g+ v++t H
  CCG91724.1 211 FGLEKVKKTIAMSLSGGEKRRLSIARALTTSP---SILLLDEPFSGVDPLAVYDLQQLVLSLKERGVSVLITDH 281
                 44455567777889999999966666666656...************************998888*****9966 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.4   0.00029      0.73      22     138 ..     118     280 ..     103     298 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00029
                 EEEEEESTTSSHHHHHHHHCCSHCCCCC.CBTEEEEE.......................................EEESXXHHHHHHHXXHHHHHCCC CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnksdeveg.rFdsvawv.......................................vvsktdkseeiletilkeLslse 80 
                 +v+l G  G GKtt +   +     ++g  F     v                                        +sk+   +++ e ++++++l++
  CCG91724.1 118 IVGLLGPNGAGKTTTFYMLVGLVTPTKGkVFIENEDVtkmpmykrarkglgylpqeesvfrkltveenlmaileflDISKEERMHRLEE-LIRDFGLEK 215
                 77778888888877776666655555543555444455557777777777777777777777777777777777779999999999988.889999998 PP

                 TTSSSS-STTS...HHHHHHHHCCCTTEEEEEEEE-SHHH....H.....HHHHCHTTSEEEEEE CS
      NB-ARC  81 ddleekeeves...lkrklvrlLltkrfllvlDDVweeed....wdkigvvlparenrlrvllTT 138
                  +  +  +      +   + r+L t  ++l+lD  +  +d    +d  ++vl+ +e++++vl+T 
  CCG91724.1 216 VKKTIAMSLSGgekRRLSIARALTTSPSILLLDEPFSGVDplavYDLQQLVLSLKERGVSVLITD 280
                 88777766544555889999*************98888888777788888888889999999995 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1    0.0003      0.78      60      78 ..     238     256 ..     200     266 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0003
     SbcCD_C  60 repalrlvfLDEAFsklDe 78 
                  ++++++++LDE Fs++D+
  CCG91724.1 238 LTTSPSILLLDEPFSGVDP 256
                 346799************7 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1    0.0001      0.26       4      39 ..     119     154 ..     117     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
                 EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEEST CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkegkkvllvaaDt 39 
                 + l+G++GaGKTtt   L  l++  + kv +   D+
  CCG91724.1 119 VGLLGPNGAGKTTTFYMLVGLVTPTKGKVFIENEDV 154
                 5689***********999999998888888877665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00012      0.32      17      50 ..     111     144 ..      94     149 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
      AAA_29  17 ieidlkgatlltGpsGsGKSTllDAiqalLvpak 50 
                 + ++  +++ l Gp+G+GK+T +  +  l +p+k
  CCG91724.1 111 LVVNKGEIVGLLGPNGAGKTTTFYMLVGLVTPTK 144
                 55664448889**********9877777777766 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   9.3e-05      0.24      20      36 ..     117     133 ..     100     147 .. 0.84
   2 ?   -1.9   0.0       1.5   3.9e+03     131     162 ..     189     211 ..     146     232 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.3e-05
      AAA_23  20 gltlItGpNGaGKTTil 36 
                  ++ + GpNGaGKTT +
  CCG91724.1 117 EIVGLLGPNGAGKTTTF 133
                 477899*********87 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
      AAA_23 131 ilnlilflgqerfeefelkdkkerleelekel 162
                 il+++++ ++er           rleel++++
  CCG91724.1 189 ILEFLDISKEERM---------HRLEELIRDF 211
                 2233333333332.........2444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:02.45
# Mc/sec: 404.80
//
Query:       CCG91725.1  [L=633]
Description: ATP-dependent DNA helicase UvrD/PcrA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-68  231.6   8.9      4e-68  230.3   6.6    2.5  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
    4.3e-55  187.5   4.5    7.8e-55  186.6   0.6    2.7  2  UvrD_C           UvrD-like helicase C-terminal domain
    1.1e-29  103.6   0.0    2.1e-29  102.7   0.0    1.4  1  AAA_19           AAA domain
    5.4e-12   46.0   1.6      4e-05   23.5   0.2    3.4  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    6.2e-12   45.2   0.1    2.6e-11   43.2   0.1    2.1  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    2.4e-08   33.8   0.5    8.8e-05   22.2   0.0    3.1  3  AAA_12           AAA domain
    1.9e-07   31.0   0.0    0.00079   19.2   0.0    2.3  2  AAA_30           AAA domain
    0.00013   21.8   0.0    0.00053   19.9   0.0    1.9  2  AAA_11           AAA domain
     0.0083   16.4   0.2       0.76   10.1   0.0    2.5  2  AAA_22           AAA domain
  ------ inclusion threshold ------
        0.1   12.3   0.2       0.28   10.9   0.2    1.7  1  Iron_traffic     Bacterial Fe(2+) trafficking
       0.15   12.6   0.1       0.72   10.5   0.0    2.1  2  5_3_exonuc       5'-3' exonuclease, C-terminal SAM fold


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.3   6.6   2.4e-71     4e-68       1     314 [.       8     275 ..       8     276 .. 0.91
   2 ?   -2.6   0.0       1.8     3e+03     136     214 ..     463     483 ..     387     534 .. 0.61

  Alignments for each domain:
  == domain 1  score: 230.3 bits;  conditional E-value: 2.4e-71
                    SSHHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT-HHHHHHHHHCTTSEEEE CS
  UvrD-helicase   1 lnpeqreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdderlrlalqnlseanisT 96 
                    ln+eqr+a++ + gpilv+A+AGsGKT++l++r+ +li+++ i+pd+il+ TFTnkAa+E+ +R+ ++++ +                +s+++ +T
     CCG91725.1   8 LNEEQRKAATAPLGPILVIAGAGSGKTRTLTYRVSYLIEKQ-IKPDHILLATFTNKAAREMLHRVDRLVRTD----------------TSKIWGGT 86 
                    799**************************************.**************************9998................79****** PP

                    HHHHHHHHHHHHHGGTTSHTTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCHHHHHHHHHHHT CS
  UvrD-helicase  97 lHsfcqkilkkeanrigldpnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnikkeelslskskaeelrelvskakek 192
                    +H +c+++l+++a  ig+++nf+i+d ed     +++ll e+++   + + + + + + +                   +  +e ++  v+k+k  
     CCG91725.1  87 FHHLCNRFLRNHATAIGFEQNFTIIDRED-----SLSLLSECIQ---ELNIQHSGRLFPSA------------------EALLEIFSLSVNKVKPL 156
                    *****************************.....9********7...55555666666644..................44555566666666665 PP

                    TCCTTHHCHSSTSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEE CS
  UvrD-helicase 193 qlspkelkkafekasdlqkkiaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasgheelfm 288
                      +  e     ++ s ++++i ++ k + e+kk+++++D++dll+++++l++ene++ +++++ +++il+DEyQDT++iQ++++ ++a++ +++++
     CCG91725.1 157 WKIIDESF---PHFSAYTEDISKLQKLFNERKKKSQLVDYDDLLSYTVKLFQENEKICRFYQSYFEYILVDEYQDTSRIQADFIDMIAQHSHQVMV 249
                    55555544...567999******************************************************************************* PP

                    EE-GGG--GGGGTB-THHHHHHHHHS CS
  UvrD-helicase 289 vGDpkQsIYgFRgAdielflkkkkdf 314
                    vGD+ QsIY++RgA+ie++l + k++
     CCG91725.1 250 VGDDAQSIYSWRGAEIENILTFPKKY 275
                    **********************9998 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.8
                    HHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCHHHHHHHHHHHTTCCTTHHCHSSTSCSHHHHHHH CS
  UvrD-helicase 136 kelleksaddslnldkkkleklikelsksrnikkeelslskskaeelrelvskakekqlspkelkkafekasdlqkkia 214
                    k l     ++++n ++k+le++                                                       ++
     CCG91725.1 463 KMLAS---KEYENNPSKQLEAV-------------------------------------------------------LN 483
                    22222...22233333333322.......................................................22 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2      0.24   3.9e+02     209     275 ..     162     224 ..      47     248 .. 0.58
   2 !  186.6   0.6   4.8e-58   7.8e-55       1     346 [.     281     600 ..     281     603 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.24
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 209 kyadlfkelaeklaelkekseskrkkeeklenlreLysllkelekkeeeeeveeklneileiatLse 275
                 +  + f+++ e++ +l++  ++++ k+++l   ++L+s++ +l +  e+e++    + + e++ L +
  CCG91725.1 162 ESFPHFSAYTEDISKLQKLFNERK-KKSQLVDYDDLLSYTVKLFQ--ENEKICRFYQSYFEYI-LVD 224
                 444556666666666666555555.23345555555555555444..2323333333333333.333 PP

  == domain 2  score: 186.6 bits;  conditional E-value: 4.8e-58
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   1 ivLekNyRStksLlkaankflenilnr.rale.kekktvekgekivvleaeteeeEaekiaatikallekneklediavLvRsnkdadkiskaLkkegi 97 
                 i+ ++NyRSt+++l +an+ +e +  + + ++  + k+ +++ k  +l + t    +  ia+ i++++ + +++++ia+L+R +  a +i+ +L + +i
  CCG91725.1 281 INIKTNYRSTPEILALANAAIEGNQFQfPKELkAIRKSLKES-KPLLLCCSTAATQSMEIANYIEKFKAQGIDYNEIAILYRAHFHALEIQLELTRRKI 378
                 5789*****************655444344442333555555.6888999999999******************************************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  98 pfnvvdeekfFkreeikdilaylkllankqdkialkrilkrlvlgigkatveriseelkklglsltDfikedtl.eygeeFieliraleeknlelllkk 195
                 pf + ++ +fF++  ikdi a+l+  +n++d++a+kri+k  + g+g++tv ++ ee+ ++  s+  +   +       +++el + l +k+ e     
  CCG91725.1 379 PFEITSGIRFFEQAHIKDICAFLRFYINPYDETAFKRIVKM-FPGVGQKTVSKLWEEYITITGSIEKLSPPKVAsRAWKNWLELQKMLASKEYE----- 471
                 *************************************9975.679*********9999999999888887765414566777777777776666..... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 196 iektaeerqalvskyadlfkelaeklaelkekseskrkkeeklenlreLysllkelekkeeeeeveeklneileiatLseseleeskkkekipiiTiHq 294
                  ++ ++    l   y+++ k l+e               +++le ++ L+s++ +++            +++l++ +L  + + ++++k+ + ++TiHq
  CCG91725.1 472 NNPSKQLEAVLNGVYMEYLKVLYESY-------------QKRLEDIEGLISFASNYDS----------TEDFLSQVSLLTGVDTSQEEKNGVRLSTIHQ 547
                 23333333334444555544444332.............238****************..........568************999999********** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 295 AKGlEFdvVflagleegtfPsyrskk.ekrleEEkRlfYVaiTRAkkrLfisy 346
                 AKGlE+ +Vfl+ l++g fPs +s k  + leEE+RlfYVa+TRAk++Lf+ y
  CCG91725.1 548 AKGLEWKIVFLIMLCDGLFPSNYSLKhAALLEEERRLFYVAATRAKDQLFLCY 600
                 ************************9976779*******************988 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   1.3e-32   2.1e-29       1     144 [.      12     259 ..      12     261 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 1.3e-32
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae......atTiHrlal................ 77 
                 qr+a+ +++ +++lv+aG+G+GKTr+l+ +v++l+e + +kp++ill++ft++Aa+e+  r++ l +         T+H+l +                
  CCG91725.1  12 QRKAA-TAPLGPILVIAGAGSGKTRTLTYRVSYLIEKQ-IKPDHILLATFTNKAAREMLHRVDRLVRTdtskiwGGTFHHLCNrflrnhataigfeqnf 108
                 89999.99***************************988.889********************98888899999999*****99**************** PP

      AAA_19  78 ..................................................................................ldfddlltealelle.e 93 
                                                                                                   +d+ddll+ +++l++ +
  CCG91725.1 109 tiidredslsllseciqelniqhsgrlfpsaealleifslsvnkvkplwkiidesfphfsaytedisklqklfnerkkksqlVDYDDLLSYTVKLFQeN 207
                 ******************************************************************************************999998843 PP

      AAA_19  94 aeeekklqeee.llivDEfqdvdelqyrLlkallgekkklllvGDpdQliyv 144
                 ++  ++ q+ + +++vDE+qd++  q  +++ ++++++++++vGD+ Q+iy+
  CCG91725.1 208 EKICRFYQSYFeYILVDEYQDTSRIQADFIDMIAQHSHQVMVVGDDAQSIYS 259
                 344566677779**********************888**************8 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.061        99       2      45 ..      24      66 ..      23      90 .. 0.64
   2 !   23.5   0.2   2.5e-08     4e-05      39     208 ..     188     365 ..     167     374 .. 0.73
   3 !   17.2   0.0   2.1e-06    0.0034     172     233 ..     532     599 ..     498     600 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.061
  Viral_helicase1  2 vvhGvpGcGKStlirkllrtsliltvnrptaelltegkpklpnl 45
                     +v + +G+GK++ +   ++  li ++++p  +ll    +k+ ++
       CCG91725.1 24 LVIAGAGSGKTRTLTYRVSY-LIEKQIKPDHILLATFTNKAARE 66
                     56677999999988777755.55555666555555555444444 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 2.5e-08
  Viral_helicase1  39 k.....pklpnlsvrtvdsflmalvks.tkgkililDEylllhaGyill.laalskaklvilfGDplQipfhsrnasfll.ahlpssl..shrv 122
                      +     ++l + +v+ +++ ++ +      ++++++DEy+   + + ++  +   ++++v+++GD +Q+ ++ r a++++   +p+++    + 
       CCG91725.1 188 SqlvdyDDLLSYTVKLFQENEKICRFYqSYFEYILVDEYQDTSRIQADFiDMIAQHSHQVMVVGDDAQSIYSWRGAEIENiLTFPKKYpsALVI 281
                      24444455566666666666666666655699********9998888885233344569***************99998615566666976777 PP

  Viral_helicase1 123 grrttyllpsdvaeilsakvgteveversgelkvetepkgqekvlvyltftqalkealgvrevttvhevqGltfdkVtlvllketd 208
                      + +t y+      ++ +a   ++++ ++ +elk + ++  ++k l++++ t+a+ +   ++ +     +qG+ +++  ++++ +  
       CCG91725.1 282 NIKTNYRSTPEILALANAA-IEGNQFQFPKELKAIRKSLKESKPLLLCCSTAATQSMEIAN-YIEKFKAQGIDYNEIAILYRAHFH 365
                      8888899999999999999.89999999999954444444448888888888877755565.999999********9999987765 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 2.1e-06
  Viral_helicase1 172 ftqalkealgvrevttvhevqGltfdkVtlvllketdlelis...........esrenllvAlTRhrkslvil 233
                       +q++k+  gvr  +t h++ Gl+++ V l+ l +      s           e+r  ++vA TR++++l ++
       CCG91725.1 532 TSQEEKN--GVR-LSTIHQAKGLEWKIVFLIMLCDGL--FPSnyslkhaalleEERRLFYVAATRAKDQLFLC 599
                      4444444..899.9******************97643..3446678888999988*************99776 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.1   1.6e-14   2.6e-11       3      52 .]     541     599 ..     539     599 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 1.6e-14
    UvrD_C_2   3 yaltihkaQGsefpaVivfdpd.laaarmgel........rrrlLYtavTRAreklilv 52 
                   +tih+a+G+e+++V+++       + ++ l         rrl+Y+a+TRA+++l+l+
  CCG91725.1 541 RLSTIHQAKGLEWKIVFLIMLCdGLFPSNYSLkhaalleeERRLFYVAATRAKDQLFLC 599
                 679***************7765566677666689999*******************996 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.57   9.3e+02     119     155 ..     169     208 ..     158     254 .. 0.55
   2 !    8.0   0.0    0.0012         2      16      72 ..     279     334 ..     269     378 .. 0.73
   3 !   22.2   0.0   5.4e-08   8.8e-05      95     194 ..     486     598 ..     429     600 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.57
      AAA_12 119 pYraqvellkkklkekeeekseke...ievntvdgfQGre 155
                  Y ++++ l+k ++e++++++  +   +   tv  fQ +e
  CCG91725.1 169 AYTEDISKLQKLFNERKKKSQLVDyddLLSYTVKLFQENE 208
                 4555555555555544443332223332233333333333 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0012
      AAA_12  16 kvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidv 72 
                  v+ ++t+YR+ peI+ +++  + +++ +  +++k  +++  ++ +  l ++   ++
  CCG91725.1 279 LVINIKTNYRSTPEILALANAAIEGNQFQFPKELKAIRKS-LKESKPLLLCCSTAAT 334
                 567899**********************999999988888.3333333333333333 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 5.4e-08
      AAA_12  95 vvklvekllkkgsee...erkkigvitpYraqvellkkk..lkekeeekseke.ievntvdgfQGrekdviilslVRsn......ekkeigflkderrl 181
                  +++++ l+++++++    +  i   + Y +  ++l++   l+  +++++ek+ ++ +t+ +  G e+++++l +          + k+ ++l++errl
  CCG91725.1 486 YMEYLKVLYESYQKRledIEGLISFASNYDSTEDFLSQVslLTGVDTSQEEKNgVRLSTIHQAKGLEWKIVFLIMLCDGlfpsnySLKHAALLEEERRL 584
                 345555555555555222245555556788888888764113333333333336*********************9996666556777899*****998 PP

      AAA_12 182 .NValTRAksklii 194
                   Va TRAk++l++
  CCG91725.1 585 fYVAATRAKDQLFL 598
                 46*********986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   4.8e-07   0.00079       1      74 [.       7      81 ..       7     117 .. 0.71
   2 !    9.5   0.0   0.00047      0.76      90     140 ..     219     268 ..     184     318 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4.8e-07
      AAA_30  1 elnaeQaaavealltsgdrvavltGpAGtGKttalkal.reaweaa.g.grviglAptgkaAkvLaeelg..ieastia 74
                eln+eQ++a++a l+      ++ ++AG+GKt +l+     ++e++ +  ++++++ t+kaA+++ + ++  ++++t +
  CCG91725.1  7 ELNEEQRKAATAPLGP----ILVIAGAGSGKTRTLTYRvSYLIEKQiKpDHILLATFTNKAAREMLHRVDrlVRTDTSK 81
                5899999999776644....589999******9999762667777764588889999*******987666334444443 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00047
      AAA_30  90 tllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdl 140
                 + ++vDE   ++  q++ +++ +++++ +v++vGD++Q     +G+ ++ +
  CCG91725.1 219 EYILVDEYQDTSRIQAD-FIDMIAQHSHQVMVVGDDAQSIYSWRGAEIENI 268
                 7899***9999988876.66666666************7555555555555 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.2e-07   0.00053       2      81 ..       8      77 ..       7      85 .. 0.87
   2 ?   -1.5   0.0       1.1   1.8e+03     209     253 ..     208     255 ..     165     255 .. 0.54

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.2e-07
      AAA_11  2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrgllds 81
                ln++qr+a + +l      +i G  G+gKT+t+++ +s+l       e++ ++ +iL+++ +N+A  e+l r+ r l+++
  CCG91725.1  8 LNEEQRKAATAPLGPI--LVIAGA-GSGKTRTLTYRVSYL------IEKQIKPDHILLATFTNKAAREMLHRVDR-LVRT 77
                8*********999877..589998.***************......45799*********************887.4444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
      AAA_11 209 klleklak.kfdvviIDEAaqavEpst.liPl.rlgakkvvLvGDpkQ 253
                 ++++++ +  f+++++DE      +++ +i +  +++++v  vGD  Q
  CCG91725.1 208 EKICRFYQsYFEYILVDEYQDTSRIQAdFIDMiAQHSHQVMVVGDDAQ 255
                 444444334788888888554443332245552222355555666655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00046      0.76       7     113 ..      22     128 ..      20     139 .. 0.72
   2 ?    3.6   0.0     0.045        73      39     120 ..     193     274 ..     171     289 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00046
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsstsskdllrellralglelka.erlsseell.ealeqalrarav.ielliiDEa 100
                  ++v++ +G+GKT++l   ++ l     +e+  +++++++ t +++   +++l+++ r +  ++++  +++ ++l  + l++++ a +  + + iiD  
  CCG91725.1  22 PILVIAGAGSGKTRTLTYRVSYL-----IEKqiKPDHILLATFTNKA-AREMLHRVDRLVRTDTSKiWGGTFHHLCnRFLRNHATAIGFeQNFTIIDRE 114
                 5899999*******998877776.....2223478999999999999.9999********999999655555555534444444444448888888888 PP

      AAA_22 101 qhlrs..eealeeLr 113
                 + l s   e+++eL 
  CCG91725.1 115 DSL-SllSECIQELN 128
                 888.66666666664 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.045
      AAA_22  39 rpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr..seealeeLrsllnlsr 120
                  ++++++t++   + ++++r   + ++  l +e ++++++ + + + + +++ +++++ D+aq +   + + +e++ ++ +  +
  CCG91725.1 193 YDDLLSYTVKLFQENEKICRFYQSYFEYILVDEYQDTSRIQADFIDMIAQHSHQVMVVGDDAQSIYswRGAEIENILTFPK--K 274
                 34444444444443333333333333333333666888888888888888877566778*****87565777787777766..5 PP

>> Iron_traffic  Bacterial Fe(2+) trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00017      0.28      33      54 ..     449     470 ..     444     499 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
  Iron_traffic  33 nvskeawqeWlkkqtmLiNekr 54 
                   +v+ +aw++Wl+ q+mL  ++ 
    CCG91725.1 449 KVASRAWKNWLELQKMLASKEY 470
                   6899*************86544 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       5.4   8.7e+03      54      67 ..     313     326 ..     284     352 .. 0.51
   2 ?   10.5   0.0   0.00044      0.72      24      73 ..     421     478 ..     417     496 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.4
  5_3_exonuc  54 kklkekLeenkeea 67 
                 k+++++L+e+k  +
  CCG91725.1 313 KAIRKSLKESKPLL 326
                 33555555554443 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00044
  5_3_exonuc  24 pgiGektAakLlkeygsleeilenld..elkekk......lkekLeenkeearlskkL 73 
                 pg+G+kt  kL +ey ++ + +e+l+  ++++ +      l++ L+ ++ e   sk+L
  CCG91725.1 421 PGVGQKTVSKLWEEYITITGSIEKLSppKVASRAwknwleLQKMLASKEYENNPSKQL 478
                 9**********************99755555544111222444444444444445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 3925.00
//
Query:       CCG91726.1  [L=1161]
Description: DNA polymerase III, alpha subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.6e-108  360.7   0.0   7.6e-108  360.0   0.0    1.4  1  DNA_pol3_alpha   Bacterial DNA polymerase III alpha NTPase do
    2.2e-61  206.0   0.0    1.3e-60  203.5   0.0    2.1  2  DNA_pol3_finger  Bacterial DNA polymerase III alpha subunit f
    3.3e-55  186.9   0.3    8.3e-55  185.6   0.3    1.8  1  PHP              PHP domain
    8.5e-28   96.5   0.0    2.2e-27   95.1   0.0    1.8  1  HHH_6            Helix-hairpin-helix motif
    1.1e-05   25.6   0.0    4.8e-05   23.5   0.0    2.1  2  HHH_3            Helix-hairpin-helix motif
  ------ inclusion threshold ------
       0.17   11.9   0.0       0.49   10.4   0.0    1.7  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
        5.9    6.7   7.1        6.9    6.5   0.2    3.4  3  XPC-binding      XPC-binding domain


Domain annotation for each model (and alignments):
>> DNA_pol3_alpha  Bacterial DNA polymerase III alpha NTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.0   0.0    3e-111  7.6e-108       1     260 []     296     557 ..     296     557 .. 0.98

  Alignments for each domain:
  == domain 1  score: 360.0 bits;  conditional E-value: 3e-111
                     HHHHHHHHHHHHHHS...TT---TTHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTT--B-S--GGGGG-HHHHHTTS----HHHHT--HHH CS
  DNA_pol3_alpha   1 eyLrklveeglkerl...keelpeevkerlekElevIekmgfadyflivadlvkaakkkgilvGpgRGSaagslvayllgiTeidPlkydllFer 92 
                     eyL+kl++egl++r+   + e +e++kerl++El+vIek gf++yfliv+d++++akk+gi+vGpgRGSaagsl+ay+l+iT+idPlky+l+Fer
      CCG91726.1 296 EYLKKLCYEGLEKRFgdrNLEEKEKIKERLDYELSVIEKTGFSSYFLIVWDFIHYAKKEGIPVGPGRGSAAGSLTAYVLEITDIDPLKYGLVFER 390
                     69*************6544446789********************************************************************** PP

                     HS-TTS-------EEEEGGGHHHHHHHHHHHH-TTTEEEEEEEEE--HHHHHHHHHHHH-GGHHHHHHHHHTS---SS--GGGG-----SHHHHH CS
  DNA_pol3_alpha  93 FlnpervsmPDiDidfekerreevidyvkekyGkenvaqiitfgtlaakaairdvgralglplkevdklaklipkelgitlekaleeekelkeli 187
                     Flnp+rvs+PDiDidf+ +rr evidyv++kyG+ +vaqiitfgt+ ak+a+rdv+r+lgl+++e+d++ak+ip+++++t+eka e ++ l++l+
      CCG91726.1 391 FLNPQRVSPPDIDIDFCYNRRSEVIDYVRKKYGERSVAQIITFGTMGAKMAVRDVARVLGLSYQEADRIAKMIPTDSSMTIEKAKELNPLLQQLY 485
                     *********************************************************************************************** PP

                     HH-HHHHHHHHHHHTTTT-EEEEEEEEEEEEE-SS-GGGTS-EEE-TTT--EEESS-HHHHHTTT-EEEEEEE CS
  DNA_pol3_alpha 188 eedeevkrlvelakkleglkrntgqHaaGvvispkeltdlvPlqkaekeeevvtqfdmedledlgllKlDfLG 260
                      +d+++++++++a+klegl+r++g+HaaGvvis+ +l d+vPl    ++ee+vtq++me + ++gllK+DfLG
      CCG91726.1 486 AHDPQCQEVLNIASKLEGLTRQAGVHAAGVVISDGDLLDFVPLSR-GDHEEIVTQWSMEPISEIGLLKMDFLG 557
                     *********************************************.99999*********************9 PP

>> DNA_pol3_finger  Bacterial DNA polymerase III alpha subunit finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.33   8.4e+02     124     156 ..     445     476 ..     410     478 .. 0.73
   2 !  203.5   0.0     5e-64   1.3e-60       1     166 []     560     724 ..     560     724 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.33
                      HHHHHH---HHHHHHHHHHHHH--HHHHHHHHH CS
  DNA_pol3_finger 124 iaqvlagfslgeAdllrramgkkkeeeleklke 156
                      +  ++ g+s +eAd++ + + +    ++ek ke
       CCG91726.1 445 V-ARVLGLSYQEADRIAKMIPTDSSMTIEKAKE 476
                      3.3566899999999999999887777777665 PP

  == domain 2  score: 203.5 bits;  conditional E-value: 5e-64
                      HHHHHHHHHHHHHHHH---.--GGG--S--HHHHHHHHHT--TTSTT--SHHHHHHHHHH---SHHHHHHHHHHSSHHHHHTTHHHHHHHHHTT CS
  DNA_pol3_finger   1 tltiirralklikekkgke.idleeipleDkkvykllskgdtlGvfqlesrgmrqllkrlkPktfeDlvalvaLyRpgpvqggnvddyikrkng 93 
                      tlt+i+++l+lik+  +++ +d++++pl+Dkk+y+ll+ g t+Gvfqles gm +l k+lkP ++eD++alvaLyRpgp++  n++ y++rk g
       CCG91726.1 560 TLTVISECLELIKKCGENQtLDPNRFPLDDKKTYELLGLGWTIGVFQLESPGMVELAKKLKPGNIEDIIALVALYRPGPME--NIPAYAERKLG 651
                      79**********99886656*************************************************************..*********** PP

                      SS----SSHHHTTTTTTTTT---BHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT CS
  DNA_pol3_finger  94 eekveyihpeleeiLketygvivyQEqvmqiaqvlagfslgeAdllrramgkkkeeeleklkekfiegakeng 166
                      + +++y hp le+iLk+tygv++yQEqvmq a vlag+slge+dllrramgkkk+ee++k++  f++g+ke++
       CCG91726.1 652 KVPITYDHPLLEPILKDTYGVMIYQEQVMQAASVLAGYSLGESDLLRRAMGKKKPEEMRKHRSLFVKGCKEKN 724
                      **********************************************************************985 PP

>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6   0.3   3.2e-58   8.3e-55       1     167 []       7     178 ..       7     178 .. 0.98

  Alignments for each domain:
  == domain 1  score: 185.6 bits;  conditional E-value: 3.2e-58
                 EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTTHHHHHHHHHHHHTTTTSEEEEEEE........................E....EHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxx RF
         PHP   1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlfgyvefykaakkkykagikpiiGleayvaddse......kerpshltllaknqeGyknl 93 
                 +lH+H+eyslld++++i+++v+kak+lg++a+a+TDhgnl+g +efyka+    +++ikpiiG+eay++ +s+      +e+ +h+tllaknq+Gyknl
  CCG91726.1   7 HLHLHSEYSLLDASARIKDIVNKAKQLGMPAVALTDHGNLYGTIEFYKAC---IQENIKPIIGCEAYITAGSRfdrkgsREKIYHITLLAKNQQGYKNL 102
                 9*************************************************...6667****************************************** PP

                 HHHHHHHHH..........HHHHHHS..................TTGGHHHHHHHHHHHHHHHC....T-EEEEEGC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxx RF
         PHP  94 lkllskaylegfyrkpridkellekhsegLivlsgclkGevfealdlieveekaeealeelakif...gdyiEints 167
                 l+l+s ++legfy+kprid++ll++  +g+i +sgc++Ge+++ +++ ++++ a++ +ee+ + f    +y+Ei+++
  CCG91726.1 103 LRLISLSHLEGFYYKPRIDRALLKECGQGIIGTSGCMNGEIPQKILEEDIKA-AKNLVEEYSRLFepdCFYLEIQNH 178
                 *******************************************999999*99.**********************87 PP

>> HHH_6  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.0   8.5e-31   2.2e-27       1      90 []     798     886 ..     798     886 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 8.5e-31
       HHH_6   1 gvevlppdvnrSeadftveeedgairlGLaaikglgeaaaerivaeRekegpfksledlarrvds.lnkrqleaLakaGaldslglnRrql 90 
                 g+ vlppd+ +Se++f+ve  +gair GL+aik++ge++ae+iv++R+k+g f+sl dl+  +d  lnk+ le+L+k+Ga+dsl ++R++l
  CCG91726.1 798 GIAVLPPDILKSEVRFSVE--NGAIRWGLSAIKNVGESVAEAIVRARKKHGDFTSLYDLCAHLDCpLNKKFLESLIKSGACDSLRKSRKEL 886
                 899****************..999****************************************************************985 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         4     1e+04      17      32 ..     446     461 ..     442     463 .. 0.59
   2 !   23.5   0.0   1.9e-08   4.8e-05      15      46 ..     823     854 ..     817     857 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4
       HHH_3  17 qklpGlgpklAknIva 32 
                 +++ Gl+ + A++I +
  CCG91726.1 446 ARVLGLSYQEADRIAK 461
                 4566666666666654 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.9e-08
       HHH_3  15 eLqklpGlgpklAknIvayReknGpfksreeL 46 
                  L+ ++ +g+++A++Iv++R+k+G f+s+ +L
  CCG91726.1 823 GLSAIKNVGESVAEAIVRARKKHGDFTSLYDL 854
                 58999*************************99 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00019      0.49       5      38 ..     982    1019 ..     979    1044 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00019
                       EEEEEEE....EEEETTEEEEEEEETTEEEEEEEETHH CS
  tRNA_anti-codon    5 Grvtsis....drsggkvifidlrDgtgriqvvlfree 38  
                       G +t+i+    ++s++ ++ + l+D tg i+v+lf++ 
       CCG91726.1  982 GIITQIErktsQKSKKPYVKLMLEDQTGHIEVILFSDT 1019
                       7888888888899**********************933 PP

>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.34   8.7e+02      10      27 ..     248     265 ..     246     268 .. 0.86
   2 ?    6.5   0.2    0.0027       6.9      24      42 ..     477     495 ..     472     499 .. 0.87
   3 ?    1.5   0.4     0.099   2.5e+02      20      34 ..    1121    1135 ..    1118    1138 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.34
  XPC-binding  10 FqqlRqlvqqnPqlLqpl 27 
                  +qq+ +l ++ Pq+L+  
   CCG91726.1 248 LQQMEELFKEYPQALENT 265
                  89************9875 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0027
  XPC-binding  24 LqplLqqlaqsnPqllqlI 42 
                  L plLqql +++Pq  +++
   CCG91726.1 477 LNPLLQQLYAHDPQCQEVL 495
                  89************87765 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.099
  XPC-binding   20 nPqlLqplLqqlaqs 34  
                    P+ L++lLq+l + 
   CCG91726.1 1121 FPSHLPSLLQELTAL 1135
                   699********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.45
# Mc/sec: 7712.29
//
Query:       CCG91727.1  [L=360]
Description: 3-dehydroquinate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-92  309.1   0.0    2.6e-92  308.7   0.0    1.1  1  DHQ_synthase  3-dehydroquinate synthase
    1.1e-12   48.2   0.0      6e-11   42.5   0.0    2.1  1  Fe-ADH_2      Iron-containing alcohol dehydrogenase
    1.4e-06   27.4   0.1      4e-05   22.6   0.0    2.2  2  Fe-ADH        Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.7   0.0   4.3e-96   2.6e-92       2     261 ..      71     322 ..      70     323 .. 0.97

  Alignments for each domain:
  == domain 1  score: 308.7 bits;  conditional E-value: 4.3e-96
                   EEE-SSGGGCCHHHHHHHHHHHHHTT--TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE---SEE CS
  DHQ_synthase   2 lvvpdgeksKsletlekildalleakleRksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgKNliGafaqPkav 98 
                   + +++geksKs++tle i++ l+++kl+Rks+l+alGGGv gDl+Gf+A+++lRG++f+ +Pttlla+vDss+GgKt+inlp+gKNliG+f+qP  v
    CCG91727.1  71 ISIASGEKSKSFRTLEAIVKRLADMKLDRKSTLLALGGGVTGDLVGFAASIFLRGISFILIPTTLLAMVDSSIGGKTGINLPQGKNLIGSFYQPLEV 167
                   6799********************************************************************************************* PP

                   EEEGGGGGGS-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHCCTT.TTGGGGGGTTHHHHHHHHHHHT CS
  DHQ_synthase  99 lidlevLktLperelraGlaEviKyalikdeelfelleenaeallkeeeeealeeliarsievkaevveeDeke.kglralLnlGHtigHaiEallg 194
                   +id+evL+tL++r l+aG+aEviKy++i++e+l+e +e+++        e++l +li+rs+e+ka++v+eDe+e +g+ra+Ln+GHt+gHa+Ea+ +
    CCG91727.1 168 WIDPEVLHTLSPRLLSAGMAEVIKYGMIAEEKLLEEIEKKE--------EANLLDLIKRSVEIKAKIVSEDEQEkTGKRAILNFGHTLGHALEAANK 256
                   *********************************87777766........456889*******************88********************* PP

                   TTTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT.-HHHHHHHHTTCTTX CS
  DHQ_synthase 195 yekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkelleveellealkkDkkv 261
                   y+ llHGeaVaiGm +a  ls+ l  ++ +++erl+++l+ ++lp++ +   + +++++al  Dkk 
    CCG91727.1 257 YKDLLHGEAVAIGMHAACLLSNWLLAFPLSAIERLKHILQLYSLPLTATGF-SKQAIFHALDLDKKR 322
                   **********************************************99888.9************96 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0     1e-14     6e-11       1     211 [.      20     242 ..      20     267 .. 0.75

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 1e-14
    Fe-ADH_2   1 vigegaleklgellkelelk.kvllvadentkkaagekveeslkeagikvevveev..eeeadleeveklveal...reketdlvvavGgGtiiDiaky 93 
                 +ig+g l++ g l ++l+lk +v+l++de +k  a + + +slk  g k+e+++ +  e+++++ + e++v++l   + ++   ++a+GgG+  D++ +
  CCG91727.1  20 RIGRGLLQSSGLLASQLGLKdRVVLLHDEAVKTYALQ-IVDSLKGYGFKPEIISIAsgEKSKSFRTLEAIVKRLadmKLDRKSTLLALGGGVTGDLVGF 117
                 5899**************9769999999999887775.6689********9766440045556777777777773335688889*************** PP

    Fe-ADH_2  94 vs..aklnvpyvsvpTa..aSvDGfaspgaslvvdgkkrtvakaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevse....plakl 184
                 ++  + ++++++ +pT+  a vD+       + + + k  + +   Pl v +D +vl++   rll +G+++++ ky  +a++kl +e+++     l +l
  CCG91727.1 118 AAsiFLRGISFILIPTTllAMVDSSIGGKTGINLPQGKNLIGSFYQPLEVWIDPEVLHTLSPRLLSAGMAEVI-KYGMIAEEKLLEEIEKkeeaNLLDL 215
                 *955689*********944467887777788888877777778899*************************99.8888998887775533222267777 PP

    Fe-ADH_2 185 saamvqeaaeklvedkketealeelle 211
                 + ++v+ +a+ + ed++e++  +++l+
  CCG91727.1 216 IKRSVEIKAKIVSEDEQEKTGKRAILN 242
                 777776666666656665555444444 PP

>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   6.7e-09     4e-05       4     188 ..      19     189 ..      18     193 .. 0.82
   2 !    2.5   0.0    0.0087        52     250     344 ..     239     354 ..     234     359 .. 0.51

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 6.7e-09
                 EEEETTGGGGHHHHHTTT-...EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S--..-HHHHHHHHTTS-TT.--E...EEEEESHHHHHH CS
      Fe-ADH   4 ivfgkgaleelgellkklgak.ralivtdkgslkksglldkvlesleeagievtvfdgvepnp..tleeveeaaalareegadv...viavGGGsviDt 96 
                 +++g+g l++ g l+++lg+k r+++++d+ +     ++ ++++sl+  g++ ++++  +++   + +++e++++++ + + d    ++a+GGG + D+
  CCG91727.1  19 VRIGRGLLQSSGLLASQLGLKdRVVLLHDEAVK---TYALQIVDSLKGYGFKPEIISIASGEKskSFRTLEAIVKRLADMKLDRkstLLALGGGVTGDL 114
                 679****************887********965...58999*************9998866651167899*****999999876666************ PP

                 HHHHHHHTT..................--EEEEESS..-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHH CS
      Fe-ADH  97 AKaialllanpevedylgegkakkkkalpliaiPTt..aGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDa 188
                    +a +  +                ++ +i iPTt  a  +s   +   i  ++    + +   +  P  + +Dpe++ tl +r++ a+++ +
  CCG91727.1 115 VGFAASIFLR----------------GISFILIPTTllAMVDSSIGGKTGINLPQG---KNLIGSFYQPLEVWIDPEVLHTLSPRLLSAGMAEV 189
                 **99999994................59*******944456777777777774444...34444588999999999999999999999998765 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.0087
                 S---HHHHHHHHHHC...C.GGGGGS-HHHHHHHHH.................HHHHHHT......................T--HHHHHHHHHHH..H CS
      Fe-ADH 250 aglgavHalahalga..lf.giphglanaillpavl.rfna......eaaperlaqlaralgge...............sdeeaaeeliealrell..k 321
                 a l+  H l+hal a  ++ ++ hg+a+ai + a+             +a erl+ + +                    +     ++ ++ +  ++  +
  CCG91727.1 239 AILNFGHTLGHALEAanKYkDLLHGEAVAIGMHAAClLS-NwllafpLSAIERLKHILQLYSLPltatgfskqaifhalD---LDKKRVQGVNSWIllQ 333
                 556677899999888334667889999999554444122.1233442223366666665544445555665666663332...3333333333322225 PP

                 HTT---SHHHHT-TT-HHHHHHH CS
      Fe-ADH 322 elglptsLselgvdeedldklae 344
                 ++g+p+  +e  v+++d+d++ +
  CCG91727.1 334 SIGFPVVSKE--VKKADIDRVLK 354
                 6666655555..55556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2604.30
//
Query:       CCG91728.1  [L=316]
Description: Rossmann fold nucleotide-binding protein involved in DNA uptake [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-66  221.0   0.0    1.2e-65  220.7   0.0    1.1  1  DNA_processg_A  DNA recombination-mediator protein A
     0.0082   16.2   0.0      0.019   15.0   0.0    1.6  1  HHH_2           Helix-hairpin-helix motif
  ------ inclusion threshold ------
      0.044   13.4   0.6      0.089   12.4   0.1    1.8  2  LDcluster4      SLOG cluster4 family


Domain annotation for each model (and alignments):
>> DNA_processg_A  DNA recombination-mediator protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.7   0.0     2e-69   1.2e-65       2     209 ..      75     281 ..      74     282 .. 0.98

  Alignments for each domain:
  == domain 1  score: 220.7 bits;  conditional E-value: 2e-69
  DNA_processg_A   2 lekagiklltledkeYPeklkeikdpPlvLfvkGnlellekravaiVGtRkaseygkevakklakelaeagitivSGlAlGiDaaahraaleagg 96 
                     +++ gi+ +++ed++YP+ lk+i++pPl+L++kG++    +  +aiVG+R++++yg+++a++la+++a+ g++++S  AlGiD+ ah +al+a+g
      CCG91728.1  75 CRNLGIEAICYEDPTYPSVLKAIDSPPLLLYCKGQIPKKWNYGIAIVGSRNPTPYGIKIARRLAYQIARVGFAVISDCALGIDTHAHLGALAAEG 169
                     78889*********************************99******************************************************* PP

  DNA_processg_A  97 ktvavlgtgldkiyPkenrklleeiaeegglllseyppgtkpkkenFpeRnriiaglseavlvveaaekSGalitaelAlelgrevfavpgdits 191
                      t+av+g+gld++yP +n +ll +++ ++gl+lse+ppgt p++ +    nrii+gls +v+vveaa+   +l  a++Ale++r++fa+pg+i++
      CCG91728.1 170 ITWAVMGSGLDRCYPPQNLELLGKVM-KKGLILSEFPPGTAPSRSTVFLKNRIISGLSIGVVVVEAAQGCASLLIARIALEQDRQLFAIPGRIDN 263
                     **************************.55****************************************************************** PP

  DNA_processg_A 192 kesagtnklikegaklvt 209
                     + + g+n+likegaklv+
      CCG91728.1 264 PYAFGPNQLIKEGAKLVC 281
                     ***************997 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.2e-06     0.019       3      52 ..      11      60 ..       9      72 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.2e-06
       HHH_2  3 lfaLGIrhVGektAklLakrFksldaLkkasleeLlevddiGeeiAqsiv 52
                l +L I+++G++t  ++++ ++ +++  +a+ +e++e  +  ++i q+i 
  CCG91728.1 11 LRFLQIPEIGSATGAKIMTGCGGIENVFNATSKEIAEKCGLSQKITQKIF 60
                56699********************************9999999999985 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.91   5.4e+03      80      97 ..      27      43 ..      22      52 .. 0.49
   2 ?   12.4   0.1   1.5e-05     0.089       2      59 ..     116     171 ..     115     184 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.91
  LDcluster4 80 iyTGlglagRnlilvlss 97
                i+TG g    n+ ++ s 
  CCG91728.1 27 IMTGCGGI-ENVFNATSK 43
                45554433.344444443 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.5e-05
  LDcluster4   2 lkigVmGsaeteakeealelaeelGrliAkegavlltGgrtGvmeaaskGakeagGlt 59 
                 + i+++Gs +   ++  +++a++l++ iA+ g+ +++    G+ + a  Ga  a+G+t
  CCG91728.1 116 YGIAIVGSRN--PTPYGIKIARRLAYQIARVGFAVISDCALGIDTHAHLGALAAEGIT 171
                 5699******..89999***************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2303.36
//
Query:       CCG91729.1  [L=857]
Description: DNA topoisomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.1e-119  400.1   1.8   1.1e-119  400.1   1.8    1.7  2  Topoisom_bac  DNA topoisomerase
    2.9e-37  126.4   3.4    1.6e-19   69.6   3.8    2.8  2  Toprim_Crpt   C-terminal repeat of topoisomerase
    3.7e-10   39.9   0.0    4.3e-09   36.5   0.0    2.4  2  Toprim        Toprim domain
  ------ inclusion threshold ------
      0.026   14.7   0.6        6.8    6.9   0.1    2.7  2  FYRC          F/Y rich C-terminus


Domain annotation for each model (and alignments):
>> Topoisom_bac  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.1   1.8  2.6e-123  1.1e-119       4     413 .]     155     600 ..     152     600 .. 0.91
   2 ?   -3.8   1.8       1.1   4.9e+03     290     323 ..     817     850 ..     776     855 .. 0.64

  Alignments for each domain:
  == domain 1  score: 400.1 bits;  conditional E-value: 2.6e-123
  Topoisom_bac   4 enlvdaaeaRrelDwliGinlsrlltk...klkgkkvlsaGRVqtptLaliveRereienFvpeeyweveatlkkekkeke...........kkkkk 86 
                   e l+ aa +R+e DwliGin +r+lt    k +g ++ s+GRVqtptLa++v R++ei +F+p++ywe+ +t+ ++++e +           +k+  
    CCG91729.1 155 EGLACAAVSRSESDWLIGINGTRALTAihsKSNGFRLTSVGRVQTPTLAMVVARDKEILQFKPQTYWEIVGTFRSRQGEYKgkwflekssqsDKEDN 251
                   568889*********************98555559999***********************************666666666********9988999 PP

  Topoisom_bac  87 kkerikdkeeaeaileklkkkeakvesvekkekkkppplpfdtttLqkeasrklglsakktlsiaqkLYekaglitYpRTdstrlsee..aelkail 181
                   + er++++e++++i+ek+ +k  +  + ek+ + ++ppl+fd+ttLq+ea+ +lg+sa+ktl+iaq+LYe+++litYpRTds+ l+e+  + +k++l
    CCG91729.1 252 HPERLWNQEQCQKIVEKCLNKWGN-ATEEKRLSLQSPPLLFDLTTLQREANYRLGYSAQKTLQIAQSLYENHKLITYPRTDSKFLPEDyvDRVKEVL 347
                   99****************987555.334445556699***************************************************887788888 PP

  Topoisom_bac 182 ealakkygkeylefaekllkktkkks...vvknkkveaHeAIrPteelpklkelsddekklYelIvrrflaslmkdakyeettvkleveeeefkasg 275
                   ++l++   + +l+fa++ l+++  +    +++n+kv++H AI+Pt++ p  k+l+ +e+k+Y+lIvrrflas++++a+++ t+  + +eee fk++g
    CCG91729.1 348 KSLST---ESFLAFAREILAHGWVNPknrIFNNQKVSDHFAIIPTTNTP--KSLNASEEKIYQLIVRRFLASFYPPAEWDVTKRITIIEEEAFKTEG 439
                   88887...5789999998887655446679***************9988..789999999************************************* PP

  Topoisom_bac 276 ktilekGfkkvy....keekkeeeeeelpelkegeevkvkeveleekkTkppkryteasLikameka................giGtpaTraeiiek 352
                   k + ++G++kvy     +e+kee+e++l ++++ge+v    +e+ +k+Tkpp+++tea+L++ame+a                g+GtpaTra+iie 
    CCG91729.1 440 KSLRSAGWLKVYgavqSTENKEEKEQSLCPIEQGERVLAIALETITKETKPPAHFTEATLLSAMESAgnlvedetlreamskkGLGTPATRAAIIEG 536
                   ************988533333333349********************************************************************** PP

  Topoisom_bac 353 lvergYverkk.kslvptelGkalvellekf..kdlvspelTaeleekLdeIaegkadakevld 413
                   l+e gY++r+k k+l +t+++++l+elle +  ++l s elT e+e kL+++++g+  ++++++
    CCG91729.1 537 LIEDGYIRRQKgKELLATPKAFSLIELLEAIniHTLRSAELTGEWEFKLQQMEKGNYPQEKFMK 600
                   **********99****************887789***********************9999985 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.1
  Topoisom_bac 290 ekkeeeeeelpelkegeevkvkeveleekkTkpp 323
                   +k+++++  +++ k+ge+ k  + + ++ +Tk+ 
    CCG91729.1 817 AKESKKNGAISRSKKGETSKKRKSSKKTSETKKK 850
                   3333333378888888888887777777777765 PP

>> Toprim_Crpt  C-terminal repeat of topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   3.4e-18   1.5e-14       3      59 ..     649     706 ..     647     707 .. 0.95
   2 !   69.6   3.8   3.5e-23   1.6e-19       1      60 []     756     816 ..     756     816 .. 0.95

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 3.4e-18
  Toprim_Crpt   3 gfsigktiagkklseeevkeLltkgktgllkGFksKkgkkFdAyLvldkdee.veFdF 59 
                  +f++ k iag+ l ++e++ Llt++++g+lkGF +K+g +F+A L+ld++ + v+F +
   CCG91729.1 649 SFRLTKYIAGRPLFPNELEGLLTNKEIGPLKGFYNKSGDPFSASLKLDDESGhVSFGY 706
                  69************************************************99999965 PP

  == domain 2  score: 69.6 bits;  conditional E-value: 3.5e-23
  Toprim_Crpt   1 gCgfsigktiagkklseeevkeLltkgktgllkGFk.sKkgkkFdAyLvldkdeeveFdFe 60 
                  +C+f+i+k+i+g++ls+ee+++Ll+++kt+ll+ F+ +K +k+F+A+Lvl+++++++F+F+
   CCG91729.1 756 KCTFRINKEILGQELSREEMQKLLKEKKTSLLTQFRsKKRKKNFSAHLVLNEEGKISFEFP 816
                  7***********************************555588******************7 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.6e-13   4.3e-09       2     100 ..       5     133 ..       4     136 .. 0.83
   2 ?    0.3   0.0      0.18   8.1e+02       4      36 ..     609     639 ..     608     674 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.6e-13
                 EEEESSHHHHHHHHHTHT...........STEEEEEEESSSSEEEHS.................TTEEEEE.......ECTTTHHHHHHHHHHH..HHH CS
      Toprim   2 lvivEgpsdaktiakalg...........sgfqavtaslGhildlet.................efkpvye.......eiedkkkvlkalkela..kra 63 
                 lvi+E+ps a+ ia+alg           +++ ++ + +Gh+++l                   +              ie+ k+ l+ l +l+  ++ 
  CCG91729.1   5 LVIAEKPSVAQDIAEALGgfpkgrhavyeNEKMVISSAVGHVVELCLpaemdvrhkkwslanlpI-----LpasfslkPIEKSKERLDLLVSLLhrEDI 98 
                 9********************************************99777776666665554443.....05566598999999999999999966667 PP

                 SEEEEECSSSHHHHHHHHHHHHHHTHHHTTTEEEEEE CS
      Toprim  64 deiilatDpDreGeaiawellevlkellenkigrvef 100
                 d ii a+D+ reGe    +l+ ++   +++ i+r++ 
  CCG91729.1  99 DLIINACDAGREGELVFRYLIRYAN--VNKPIQRLWL 133
                 7********************8888..4445888876 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.18
                 EESSHHHHHHHHHTHTSTEEEEEEESSSSEEEH CS
      Toprim   4 ivEgpsdaktiakalgsgfqavtaslGhildle 36 
                 ivE+ ++ ++i ++  ++ + + + +Gh+++ +
  CCG91729.1 609 IVEKVKAFGSIDNF--RKPLPISSPQGHAIEET 639
                 9*************..67999999999998765 PP

>> FYRC  F/Y rich C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0057        26      12      80 ..     253     329 ..     245     334 .. 0.76
   2 ?    6.9   0.1    0.0015       6.8       5      55 ..     426     476 ..     425     489 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0057
        FYRC  12 pdlsfeassatevWqkvlervqelrkeaglk.......lklfpesisGeemfGLsepaivrlieslpgaekctnY.k 80 
                 p+  + ++ ++++ +k l++  ++ +e++l+         l++ + +    +G s ++ +++ +sl +++k+ +Y +
  CCG91729.1 253 PERLWNQEQCQKIVEKCLNKWGNATEEKRLSlqsppllFDLTTLQREANYRLGYSAQKTLQIAQSLYENHKLITYpR 329
                 6666677777777777777777777777776777787755666777888899*********************9963 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0015
        FYRC   5 rvtveedpdlsfeassat.evWqkvlervqelrkeaglklklfpesisGeem 55 
                 r+t+ e++ ++ e++s   + W kv+ +vq   ++++++ +      +Ge++
  CCG91729.1 426 RITIIEEEAFKTEGKSLRsAGWLKVYGAVQSTENKEEKE-QSLCPIEQGERV 476
                 68999************9788**********88888775.333344455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (857 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1451  (0.0809303); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 5681.18
//
Query:       CCG91730.1  [L=43]
Description: hypothetical protein MFUM_200043 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       150  (0.00836633); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 332.80
//
Query:       CCG91731.1  [L=789]
Description: putative phosphoketolase 2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-152  506.9   0.0   3.5e-152  506.4   0.0    1.1  1  XFP_N     XFP N-terminal domain
    4.1e-85  283.9   0.0      7e-85  283.2   0.0    1.4  1  XFP       D-xylulose 5-phosphate/D-fructose 6-phosphate phosp
    1.8e-80  269.2   0.0    2.5e-80  268.7   0.0    1.2  1  XFP_C     XFP C-terminal domain


Domain annotation for each model (and alignments):
>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  506.4   0.0  5.9e-156  3.5e-152      12     363 ..      13     364 ..       3     365 .. 0.98

  Alignments for each domain:
  == domain 1  score: 506.4 bits;  conditional E-value: 5.9e-156
       XFP_N  12 kywraanylavgliylkdnpllreplkeedvkarllGhwGtvpGlsflyahlnriikkydqnmlyvvGPGhGgpalvaasylegsyselypeiskdeeG 110
                  yw aanyla+++ ylk+npll  pl++e++k r+ GhwG++pGl+++y  lnr+i+k +++ l+++GPGh + a++a++yleg+yse+ypeis+d +G
  CCG91731.1  13 DYWNAANYLAAAQFYLKENPLLLVPLRPEHLKPRIRGHWGSAPGLNLVYVQLNRLIQKTNAQFLFITGPGHCSSAILANLYLEGTYSEFYPEISQDLDG 111
                 6************************************************************************************************** PP

       XFP_N 111 lkklfkqfsfPGGipshvaaetPGsiheGGelGyalshayGavldnPdlivacvvGdGeaetGPlatswhsnkflnPaedGavlPilelnGykisnpti 209
                 l  +++qfs PGG+pshv+a tPGsiheGGelGy+l ha+Gav+d+P+li+a+vv dGeaetGPla+sw+s+ flnPa+dGavlPi+++n  k+s pti
  CCG91731.1 112 LTLFCRQFSSPGGVPSHVSAMTPGSIHEGGELGYSLLHAFGAVFDHPELIAAAVVSDGEAETGPLAASWQSINFLNPARDGAVLPIFHVNDGKLSGPTI 210
                 *************************************************************************************************** PP

       XFP_N 210 larisdeelkklfeGlGyepafvededteslhkllaevldkaveeihdiqkearsneeasrPkwPmiilrtPkGwtgPkyvdGkkvegsfrahqvPlal 308
                 ++r++d+++  +f+G+Gyep fv ++d+ ++h  l   l+ka   i +iq+ea+++   s+P+wPmi+lrtP GwtgPk vdG+k+eg++r+h+ Pl  
  CCG91731.1 211 FGRMEDKDIAMFFSGMGYEPLFVCGNDPRQVHTELGVALEKAYATIRQIQQEAKEKGVHSKPRWPMIVLRTPDGWTGPKEVDGVKIEGTYRSHRSPLMD 309
                 *************************************************************************************************** PP

       XFP_N 309 arentaklellkewlksykpeelfdedgslkeelkelaPkgekrlaanpeanggl 363
                 aren+++l+ll++wlksy+pe+lfde+g+l+++l +laPkg +r++a p+angg 
  CCG91731.1 310 ARENPEHLKLLESWLKSYHPEKLFDESGKLRKDLSNLAPKGSLRMGASPYANGGS 364
                 *****************************************************96 PP

>> XFP  D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.2   0.0   1.2e-88     7e-85       2     176 .]     394     568 ..     393     568 .. 0.99

  Alignments for each domain:
  == domain 1  score: 283.2 bits;  conditional E-value: 1.2e-88
         XFP   2 algkylrdvlkknpenfrifgPDetaSnrLnavfevtkrqwqeeieeedeelaaeGrvievlsEhlcegllegYlltGrhglfasyEaflrivdsmvnq 100
                 +lgkylrdvl++np+nfrif+PDet SnrL+avfevt+r++ ++++++d++l+a+Gr++e+lsEh+c+g+legYll+Grhgl+ syEaf++i+dsm++q
  CCG91731.1 394 VLGKYLRDVLRRNPTNFRIFCPDETDSNRLSAVFEVTNRCFVARTNPDDDHLSADGRIMEILSEHCCQGWLEGYLLSGRHGLLVSYEAFAMILDSMASQ 492
                 79************************************************************************************************* PP

         XFP 101 hakflkkakelewrkdvaslnllltstvwrqdhNgfsHqdpglidavlnkkaevvrvylPpDaNtllsvldhclrs 176
                 hak+lk  +e++wrk++asln+ll+s+vwrq+ +g++Hq pg+id+++nkk +v+r+ylPpD+Ntllsv+dhclrs
  CCG91731.1 493 HAKWLKLYREIPWRKPIASLNYLLSSHVWRQEYDGYTHQGPGFIDTLINKKGNVIRIYLPPDTNTLLSVMDHCLRS 568
                 **************************************************************************97 PP

>> XFP_C  XFP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.7   0.0   4.2e-84   2.5e-80       1     202 []     579     783 ..     579     783 .. 0.99

  Alignments for each domain:
  == domain 1  score: 268.7 bits;  conditional E-value: 4.2e-84
       XFP_C   1 KqpepqylsldeAeehckkGasiwewastdegeepdvvlagiGdeptlEvlaAvellreelpelkvrvvnvvdLmklqeesehphglsdeefdelFtkd 99 
                 Kqp+ ++l+++eA++hc++Gasiw+was+deg +p+++l ++Gd+ptlE++aA +ll++++pelkv+vvnvvdLm+l++++ hphg+++++f +lF++ 
  CCG91731.1 579 KQPALNWLNMEEARAHCARGASIWTWASNDEG-NPNIILGCAGDVPTLETVAASWLLQKHFPELKVKVVNVVDLMTLSPPAYHPHGMDEQRFIHLFSAT 676
                 9******************************9.9***************************************************************** PP

       XFP_C 100 kpvifnfHgYptlikrLlykrknherlhvrgYkeeGtttTpfdmlvlnevdRfhlaidai....krveklkkkaaelaeklkekleehkkyireegeDl 194
                 +pv+f+fHgYp+++++L+++r+n +r+hvrgY+eeGtttT+fdm+vln+++R+hlaidai    k v++l++k ++l+  +++k++eh++y+r++ +D+
  CCG91731.1 677 QPVLFAFHGYPRMVHDLIHGRPNPARFHVRGYQEEGTTTTSFDMVVLNKMSRYHLAIDAIkyalKGVPHLRTKGENLIVFFERKIAEHTTYVRAHLDDM 775
                 ************************************************************888888999****************************** PP

       XFP_C 195 pevedwkw 202
                 pe+++w+w
  CCG91731.1 776 PEIKNWTW 783
                 ******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.67
# Mc/sec: 3554.50
//
Query:       CCG91732.1  [L=509]
Description: Inner membrane component of tripartite multidrug resistance system [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-18   66.6  50.9    1.4e-16   60.4  37.3    2.5  3  MFS_1     Major Facilitator Superfamily
    4.5e-08   32.4  11.2    4.5e-08   32.4  11.2    2.6  2  Sugar_tr  Sugar (and other) transporter
      0.002   17.5   4.7     0.0035   16.7   2.6    2.1  2  MFS_4     Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
       0.13   12.1   0.3        1.1    9.2   0.0    2.4  2  NDUF_B4   NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4  37.3   3.2e-20   1.4e-16       9     254 ..      31     316 ..      22     322 .. 0.72
   2 !   15.7   5.6   1.2e-06    0.0055       3     134 ..     277     420 ..     275     433 .. 0.72
   3 ?   -4.5   1.2       1.7   7.7e+03     157     223 ..     490     502 ..     480     506 .. 0.46

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 3.2e-20
       MFS_1   9 alarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpag 106
                  +++s+++++   +   +lg sps + +  t++++g a+++++  +ls+ +G  r ll ++++++l+ ++l++ ++ + l+l++r+  Gl+aga++ ++
  CCG91732.1  31 VYSSSAYAVLNR-HAVGELGQSPSHAMWTSTIFFIGRALGMFLSPWLSTAYGKARSLLGAIIILILSNFILAL-TTDFyLFLFFRLPLGLAAGAVMMLC 127
                 333333333333.8899**************************************************777776.66666******************** PP

       MFS_1 107 aaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafv.lfllllpeepperkrkspkeee............... 188
                 ++++ d +p ++ ++++ l++      + +gp++gg+l    ++Wr  f+i+ ++ +++f+ lf++l   ++ +r+ + ++  +               
  CCG91732.1 128 QYVLMDFYPISKWPFVTTLFGFLLLTTFGFGPPFGGVLQeYRWNWRDYFLINLLLHMILFWiLFVFLRKKNDITRSVPLDWIGLslltvcffsfqivvs 226
                 ***************************************88899***************8845444444445555555444444666666666666666 PP

       MFS_1 189 ..............................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllalla 254
                                               +  ++ p+++  +++lk ++  + +++ ++f++ + ++++l+     ++lg++  +l++  l+l+ 
  CCG91732.1 227 rgqdedwynsffincffflgmsslvyfivwELGEKEPFFD-VRHFLKLNFSIANVLGPISFGVLYGAFSVLIGA--LQQLGYT-SFLSS--LPLPP 316
                 6666666666666666666666666666666666666666.555555552223444444444444445555555..5666666.34444..44444 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.2e-06
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltl...yalgaavaslpl.GrlsdrfGrrrvlllglllfalglllll...fa..ss.lw.lllv 90 
                 +a +l  +++++l+ a++  l  +l+ +    ++l +l    +l+++ + +pl  +ls+r  +r+v  l+++l++l++++ +   f    s +  ++l+
  CCG91732.1 277 IANVLGPISFGVLYGAFS-VLIGALQ-QLGYTSFLSSLplpPMLFCLPFLYPLsVFLSNRSDPRPVASLCFALLSLFCYMTSnydFFnrRSfFIqTVLL 373
                 677788888888888888.6667766.666777788888889999999999997999********************6666675532343333346*** PP

       MFS_1  91 lrvlqGlgagalfpagaaliadwfpkeergrai....gllsagfslGa 134
                 + +l G + g+l ++  + i d++++ ++ +ai     l + +fs+G 
  CCG91732.1 374 SQILLGGMVGLLPAINRISIEDLSKR-NQQKAInegiLLRTFSFSIGG 420
                 ********988888888888888888.777777332123333444443 PP

  == domain 3  score: -4.5 bits;  conditional E-value: 1.7
       MFS_1 157 laivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffgf 223
                 +ai++l+                                                       +ff++
  CCG91732.1 490 CAILYLFI------------------------------------------------------TFFIW 502
                 33333333......................................................22222 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4  11.2     1e-11   4.5e-08      43     189 ..      42     191 ..      15     197 .. 0.84
   2 ?    1.2   0.2     0.029   1.3e+02     322     378 ..     209     258 ..     205     263 .. 0.71

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1e-11
                 H...........HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-S CS
    Sugar_tr  43 e........ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApk 133
                 +        s +   ++  if++G+++G +++ +l++ +G+  sll a+++++ ++++ a+++    ++++++ R+ +G+++G++ +l+   +  + p 
  CCG91732.1  42 RhavgelgqSPSHAMWTSTIFFIGRALGMFLSPWLSTAYGKARSLLGAIIILILSNFILALTT---DFYLFLFFRLPLGLAAGAVMMLCQYVLMDFYPI 137
                 0333334446678899***********************************************...9******************************** PP

                 CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 134 klRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilll 189
                 ++  ++++l+ + + + + ++  fg +l++++    wr  + ++l++ ++l+ +l+
  CCG91732.1 138 SKWPFVTTLFGFLLLTTFGFGPPFGGVLQEYRW--NWRDYFLINLLLHMILFWILF 191
                 *********999999999999999999988876..899999999999866665443 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHH CS
    Sugar_tr 322 lGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsEl 378
                 +G++  ++cf+ + iv+  +++++ +++  +i +      +f lg+ ++++++v El
  CCG91732.1 209 IGLSLLTVCFFSFQIVVSRGQDED-WYNSFFINC------FFFLGMSSLVYFIVWEL 258
                 788889999999989999999995.777665544......44457777777776665 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.6   7.7e-07    0.0035      22     108 ..      47     133 ..      37     148 .. 0.85
   2 ?   -0.2   0.0      0.11   4.7e+02     293     347 ..     244     299 ..     239     311 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.7e-07
       MFS_4  22 egqlslsqagllaaaNylGYLvGallaa.falsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvla 108
                 e++ s+s+a +  ++ ++G  +G +l    + + g++R  ll++++   l+ +  alt+ f +fl  R+ +G+a+++v+++   + + 
  CCG91732.1  47 ELGQSPSHAMWTSTIFFIGRALGMFLSPwLSTAYGKARS-LLGAIIILILSNFILALTTDFYLFLFFRLPLGLAAGAVMMLCQYVLMD 133
                 56679999***************9877414556666776.99*************************************998877765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.11
       MFS_4 293 flaitalvlqlarelappat.rrllglmTasfgigQilGpllasllaeatgslala 347
                 fl++ +lv  ++ el  +++   +  ++ + f i  +lGp+ +++l+ a + l  a
  CCG91732.1 244 FLGMSSLVYFIVWELGEKEPfFDVRHFLKLNFSIANVLGPISFGVLYGAFSVLIGA 299
                 6666666666666666666655566678899*************999877766555 PP

>> NDUF_B4  NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.21   9.4e+02      74     106 ..     166     198 ..     163     204 .. 0.70
   2 ?    9.2   0.0   0.00024       1.1      82     123 ..     375     416 ..     359     417 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.21
                 HH----HHHHHHHHHHHHHHHHHHHH.HHHHHHH CS
     NDUF_B4  74 pnfrptpktsllGalvgvvpllflyy.vlktdrd 106
                 +++r++ +  +l + + + ++lf+++ v+  +++
  CCG91732.1 166 QEYRWNWRDYFL-INLLLHMILFWILfVFLRKKN 198
                 678999999999.666677777777646555444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----S-- CS
     NDUF_B4  82 tsllGalvgvvpllflyyvlktdrdrkekliqeGkldrkfnl 123
                 ++llG +vg++p +  + +   ++ +++k+i+eG l r+f+ 
  CCG91732.1 375 QILLGGMVGLLPAINRISIEDLSKRNQQKAINEGILLRTFSF 416
                 689***********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3437.84
//
Query:       CCG91733.1  [L=522]
Description: Inner membrane component of tripartite multidrug resistance system [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-29  101.2  38.6    5.5e-29  101.2  38.6    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2  38.6   3.1e-33   5.5e-29      18     337 ..      37     414 ..      19     422 .. 0.83
   2 ?   -4.2   0.4      0.35   6.3e+03     218     231 ..     502     515 ..     498     518 .. 0.49

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 3.1e-33
       MFS_1  18 alplalaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalg.lllllfasslw.lllvlrvlqGlgagalfpagaaliadw 113
                 ++ l+ a dlg+sps ++++ t+y++g+a++ l++G++ dr fGr   lll++ +fal+ +l+++  ss + l l++r+l G+ +g+ +++++  + d+
  CCG91733.1  37 TFNLYPAGDLGVSPSHASWISTIYFAGQAFG-LFIGPWFDRaFGRVQSLLLSIGFFALFdFLVAI--SSDYyLSLFFRLLLGISGGSTMTLCQLNLLDY 132
                 4444679*******************99865.7899999********************888888..66666*************************** PP

       MFS_1 114 fpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........................ 188
                 +p ++ ++++ +++      + +gp++gg++ +s+gWra f+  + + +++++++ + l +   +r+ ++p+++                         
  CCG91733.1 133 YPISRWPFVTTYFGFLQVSVFGFGPVVGGFINESFGWRAYFLTSCTLHIICGLIISWILIVLTEKRQEDKPVPLPfdwigfmlllfaalcfqtlvtrgq 231
                 **********99988888888********************************9999998888888888888888899********************* PP

       MFS_1 189 ...........................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllply..lqevlglsglllaglllallalvga 258
                                            +  ++ p+++ +k++lk+ +l + +i+ ++f++++ +++tl++++  l+ + ++s  ++agl++a l ++  
  CCG91733.1 232 dedwynstfidllflfgvisiiyfvvwEMGEKNPFIN-LKLFLKPTFLISSIITPISFAIVYGLFSTLVFTLqvLKNHTNFS-SFQAGLAMAPLLFFLP 328
                 *************************************.********887555555555555555555555532269999999.7****88888888888 PP

       MFS_1 259 ilallagrlsdrlgrrrrlllallllllaalglallavt........ssavllllvlvl..iGfglgfvfpsllalasdlappeeagta 337
                 i+ +l+ +ls r    ++ l+a lll+l+ +++++++ +         ++++  ++l++  +  ++   +p+l+a+a + ++++++ +a
  CCG91733.1 329 IIYPLSVFLSPR---INPKLIASLLLTLLGIFCYWTGYYdffnkrafFDQFFNQYILFTqiLNGAYVGLVPALNAIAINGLSKKNQESA 414
                 889999999999...55699999999999999999999978766666333333335554544445555589999999988877777655 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 0.35
       MFS_1 218 lfffgfsglltllp 231
                 ++ f+++++l+++p
  CCG91733.1 502 SWIFFLMAILVWIP 515
                 34444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 3313.06
//
Query:       CCG91734.1  [L=494]
Description: Outer membrane component of tripartite multidrug resistance system [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-30  104.5   5.7    1.3e-16   61.0   1.9    3.0  3  OEP       Outer membrane efflux protein
  ------ inclusion threshold ------
      0.035   14.1   0.0       0.12   12.4   0.0    1.8  2  NOG1_N    NOG1 N-terminal helical domain


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.9e-07    0.0062       2      42 ..      81     121 ..      80     123 .. 0.93
   2 !   27.6   0.0   2.5e-10   2.3e-06      75     188 .]     163     276 ..     135     276 .. 0.93
   3 !   61.0   1.9   1.5e-20   1.3e-16      11     188 .]     309     487 ..     305     487 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.9e-07
         OEP   2 dellalalennpdlkaaeaeieaaeanlkaakaeflPtlsl 42 
                 ++ +++al +npdlka+  +i +a+a ++ a++++lP++s 
  CCG91734.1  81 NRIITIALGKNPDLKASLSRIHQAWAIAAGARSRYLPSFSS 121
                 678899*********************************96 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 2.5e-10
         OEP  75 lfdggkrrarvkaakaqleaaeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeae 173
                 l  +g+ +arv+aa  + +a+ea+++ ar+ l + +a+ y +l +a+e+l la+  ++  +++l l++ r k G  +ll v ++++rl    +  ++ e
  CCG91734.1 163 LDLWGEDKARVRAAIGMARASEAEYALARLFLSTTLASRYIRLASAEEELGLARSGQQIINELLHLVQMRKKSGIENLLPVHTIEQRLETINQLVNSLE 261
                 6778**************************************************************************99********99999999999 PP

         OEP 174 qqlqlaraqLeyllg 188
                 ++ ++ r ++++l g
  CCG91734.1 262 RETKILRDEIARLAG 276
                 999988888888765 PP

  == domain 3  score: 61.0 bits;  conditional E-value: 1.5e-20
         OEP  11 nnpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgtt.svgltlsqplfdggkrrarvkaakaqleaaeaqleqarqqlrl 108
                 ++pd++ ++ + ea ++++k+ k +f+P+l+l +  g+e+ +  + + ++  +    +g   ++p+f+ g+ ++++  a+ ++ +a + ++ ++++  +
  CCG91734.1 309 RRPDVAVSRWRAEALAHQVKVTKTAFYPNLDLVALVGFETLNFATLFLNPALPLLyIAGPAWNLPIFTAGRLSSELVVAQEEYNIAVESYNSTLLSAFQ 407
                 58******************************************9999888887799****************************************** PP

         OEP 109 evaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                 +va a++ ++ + ++l  +e++  +a++++el  +++ aG  +++d+l+ q  l q++++l +  ++   a  +L ++lg
  CCG91734.1 408 QVADALAVWKETDKNLISQEQSTSSAKSNAELSARLFSAGINTKTDLLDLQYTLIQSQITLSNRTAEHLEAAVGLFLALG 487
                 ***************************************************************99999999988877776 PP

>> NOG1_N  NOG1 N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.3e-05      0.12      48     111 ..      50     118 ..      39     124 .. 0.84
   2 ?   -2.5   0.0      0.49   4.4e+03      12      20 ..     251     259 ..     218     302 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.3e-05
      NOG1_N  48 tasntlsdkLeeivkkfPnldelhpFyr....elldvlvdkd.elkksLaqvkwarklirkigkeyvnk 111
                 t+  ++++  e+ivkk+P+l   + F++     ++ ++++k+  lk sL+++++a  +++  +++y+ +
  CCG91734.1  50 TLDAQFDNSSEKIVKKWPSLRWWEEFHNpemnRIITIALGKNpDLKASLSRIHQAWAIAAGARSRYLPS 118
                 45567888899*********9999998632226888999**999***************9999999866 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.49
      NOG1_N  12 elidkalrr 20 
                 e+i++ ++ 
  CCG91734.1 251 ETINQLVNS 259
                 222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3561.49
//
Query:       CCG91735.1  [L=430]
Description: Membrane fusion component of tripartite multidrug resistance system [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-18   65.5   0.6    1.1e-15   57.5   0.6    2.3  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    5.5e-16   59.2   0.1      1e-11   45.5   0.0    2.7  2  HlyD_3           HlyD family secretion protein
      2e-11   43.5   2.3    2.4e-09   36.9   0.2    2.9  3  Biotin_lipoyl_2  Biotin-lipoyl like
    9.8e-09   35.0   0.0    4.5e-08   32.9   0.0    2.0  1  HlyD             HlyD membrane-fusion protein of T1SS
    3.5e-05   23.5   0.0      0.026   14.3   0.1    2.4  2  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
      0.018   15.4   3.8          6    7.3   0.3    3.2  3  Csm1_N           Csm1 N-terminal domain
      0.023   14.6   0.1       0.45   10.5   0.0    2.9  2  Prot_ATP_ID_OB   Proteasomal ATPase OB C-terminal domain


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.6   4.2e-19   1.1e-15      22     186 ..      87     317 ..      82     321 .. 0.76

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 4.2e-19
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXX................................................ CS
    HlyD_D23  22 vsarveGwveklyvnatgdkVkkGqpLaelyspe....lvaaqeeyllalk................................................ 68 
                 ++++v+G v+++  +   + V++G+ L++l+  +    l +a++++ +  +                                                
  CCG91735.1  87 LKSQVSGVVTEVLYE-NTQLVHQGEVLVRLDRLDsrvaLERAEANLGETVRrvedlfyqvqvsrsrllaeiarldrlkhdlaryksvvsygavseqlvd 184
                 677888888888888.78888888888887654411125556666666666888888888888888888888888888888888888888888888877 PP

                 .........XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  69 .........akkklkkkelleaarerLrllgvseeqiaelektgkvqktv.....tvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevye 153
                          ++++++++  l  a++++ + +++++ + + ++t+  + ++     +v+ap++G++ +++v+ G+ v+p++ l++i  l+ +Wvea+  e
  CCG91735.1 185 dteqqvkelEAQVKQDEASLYDAESQIFNTKIEDHPLVKQAATELKNAYLdyvrrEVYAPVTGYIANRKVQPGDEVHPDTYLLSIVPLDYLWVEANYRE 283
                 766665554333333334888889999999999988777666665555442222379****************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX CS
    HlyD_D23 154 qqlalvkvgqkvevtvealpgk.tfeGkvdyiyp 186
                 ++++++++gq+v++tv+++  +  ++G+v+ ++p
  CCG91735.1 284 REMKKIRPGQPVTITVDYYGRRlIYHGQVEGLHP 317
                 *******************998456888876665 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00023      0.58       2      32 ..      87     117 ..      86     134 .. 0.87
   2 !   45.5   0.0     4e-15     1e-11       2     106 .]     241     361 ..     240     361 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00023
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiip 32 
                 l++ v+Gvv+e+ +e+ + v +g++l+++  
  CCG91735.1  87 LKSQVSGVVTEVLYENTQLVHQGEVLVRLDR 117
                 789**********************998755 PP

  == domain 2  score: 45.5 bits;  conditional E-value: 4e-15
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkld.qgsdy.tlkgkierisp.........tvdaktg.... 85 
                 ++Apv+G ++  +v++g+ v + + ll+i+p d l+vea   ++++++i+ +gq+vt+++d  g  +  + g++e + p          +++ tg    
  CCG91735.1 241 VYAPVTGYIANRKVQPGDEVHPDTYLLSIVPLDYLWVEANYREREMKKIR-PGQPVTITVDyYGR-RlIYHGQVEGLHPgtgsafallPPENATGnyih 337
                 89***********************************************7.**********5454.4599********955444332222233334666 PP

      HlyD_3  86 ...aykvevslenpekksiplkpG 106
                    +++v+++l+++e k+ pl+pG
  CCG91735.1 338 iveRVPVRIRLSPEELKRHPLRPG 361
                 666777999999998888888887 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.2   9.5e-13   2.4e-09       3      49 ..      85     131 ..      79     132 .. 0.96
   2 ?   -2.3   0.4       1.6   4.2e+03      37      50 .]     185     198 ..     184     202 .. 0.76
   3 !    5.1   0.0     0.008        21       5      40 ..     241     276 ..     238     283 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 9.5e-13
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaql 49 
                      v+++++vsG+V++++ +  q V++G vL++lD  + ++al +aea+l
       CCG91735.1  85 VPLKSQVSGVVTEVLYENTQLVHQGEVLVRLDRLDSRVALERAEANL 131
                      8899*****************************************98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
  Biotin_lipoyl_2  37 alqlalaqaeaqla 50 
                      +++ +++ +eaq++
       CCG91735.1 185 DTEQQVKELEAQVK 198
                      56778888888875 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.008
  Biotin_lipoyl_2   5 IaapvsGrVaqlnVkdGqrVkaGdvLaelDsralql 40 
                      + apv G +a   V+ G++V+    L+ + + ++++
       CCG91735.1 241 VYAPVTGYIANRKVQPGDEVHPDTYLLSIVPLDYLW 276
                      6699***********************999999886 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   1.8e-11   4.5e-08      12      73 ..      81     363 ..      58     366 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.8e-11
                 E.................................................................................................. CS
                 x.................................................................................................. RF
        HlyD  12 a.................................................................................................. 12 
                 +                                                                                                  
  CCG91735.1  81 Ignlvplksqvsgvvtevlyentqlvhqgevlvrldrldsrvaleraeanlgetvrrvedlfyqvqvsrsrllaeiarldrlkhdlaryksvvsygavs 179
                 055555555555555555556666666666666666666666666666666677777777777777777777777777777777777777777777777 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  CCG91735.1 180 eqlvddteqqvkeleaqvkqdeaslydaesqifntkiedhplvkqaatelknayldyvrrevyapvtgyianrkvqpgdevhpdtyllsivpldylwve 278
                 777777777777777777777777777777777777888888888888888888888888888888888888888888888888888888888888888 PP

                 ....EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSB......................EEEEEEEEEEEETTEEEESSSS- CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  13 ....etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispd......................rvpvrvvvekaqgpyyplriglk 73 
                     e+  +++r+gqpv++++d +++++   ++g V g  p+                      rvpvr+ + +   + +plr gl+
  CCG91735.1 279 anyrEREMKKIRPGQPVTITVDYYGRRL--IYHGQVEGLHPGtgsafallppenatgnyihiveRVPVRIRLSPEELKRHPLRPGLS 363
                 889999*********************9..*******************************************************97 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1     1e-05     0.026      44      73 .]      86     115 ..      84     115 .. 0.93
   2 !    6.7   0.0    0.0024       6.3      44      73 .]     240     269 ..     235     269 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1e-05
                    EEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtvevgdllaki 73 
                    +++++++Gvv+e+l+++ + v++g++l+++
     CCG91735.1  86 PLKSQVSGVVTEVLYENTQLVHQGEVLVRL 115
                    689************************986 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0024
                    EEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtvevgdllaki 73 
                    e+ ap++G+++  +v+ Gd+v+ ++ l+ i
     CCG91735.1 240 EVYAPVTGYIANRKVQPGDEVHPDTYLLSI 269
                    8999*****************999998765 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.61   1.6e+03      22      37 ..      95     110 ..      93     133 .. 0.82
   2 ?    7.3   0.3    0.0023         6      31      62 ..     178     209 ..     164     215 .. 0.83
   3 ?    7.1   0.0    0.0027       6.9      13      32 ..     395     415 ..     385     419 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.61
      Csm1_N  22 vsklvhENsvLsqkle 37 
                 v+ +++EN+ L  + e
  CCG91735.1  95 VTEVLYENTQLVHQGE 110
                 889999**99987655 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0023
      Csm1_N  31 vLsqkletkdqeiesLkeqlaeleekvkelee 62 
                 v +q ++  +q++++L++q+++ e+ + ++e+
  CCG91735.1 178 VSEQLVDDTEQQVKELEAQVKQDEASLYDAES 209
                 66788999999999999999999988877766 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0027
      Csm1_N  13 er.ldsAdllvsklvhENsvL 32 
                 er ld Ad l++k+++ N  +
  CCG91735.1 395 EReLDGADQLIQKVIESNLYK 415
                 4449***********999765 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00018      0.45      21      50 ..     238     265 ..     181     268 .. 0.91
   2 ?    0.3   0.0      0.28   7.1e+02      31      43 ..     352     364 ..     348     368 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
                     S-EEEEEE-GGGSSST--TTEEEEEETTTT CS
  Prot_ATP_ID_OB  21 deevvvslagavpremLrpgDlVavdkdtg 50 
                     + ev+ +++g +++ ++ pgD V  ++dt+
      CCG91735.1 238 RREVYAPVTGYIANRKVQPGDEV--HPDTY 265
                     569******************97..66666 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.28
                     GGSSST--TTEEE CS
  Prot_ATP_ID_OB  31 avpremLrpgDlV 43 
                      ++r +Lrpg +V
      CCG91735.1 352 ELKRHPLRPGLSV 364
                     68999*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1036  (0.0577835); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 2925.99
//
Query:       CCG91736.1  [L=296]
Description: Opacity protein or related surface antigen [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.49
# Mc/sec: 1815.59
//
Query:       CCG91737.1  [L=415]
Description: Glycolate dehydrogenase, iron-sulfur subunit GlcF [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-24   85.2   5.8    8.6e-12   45.1   0.0    3.2  3  CCG              Cysteine-rich domain
    8.1e-11   42.3   4.6    8.1e-11   42.3   4.6    2.0  2  Fer4_7           4Fe-4S dicluster domain
    1.2e-10   41.7   4.9    2.4e-10   40.7   3.8    2.0  2  Fer4_8           4Fe-4S dicluster domain
    2.2e-10   40.9   4.9    2.2e-10   40.9   4.9    2.0  2  Fer4_17          4Fe-4S dicluster domain
    7.1e-05   23.7   3.4    7.1e-05   23.7   3.4    2.0  2  Fer4_16          4Fe-4S double cluster binding domain
    0.00037   20.2   8.8       0.18   11.7   0.4    2.7  2  Fer4             4Fe-4S binding domain
     0.0021   18.1  20.0     0.0072   16.4  11.5    2.6  2  Fer4_10          4Fe-4S dicluster domain
     0.0076   17.1   5.6        1.3    9.9   0.6    3.2  3  Fer4_22          4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.013   15.7   1.2          3    8.1   0.2    2.5  2  Fer4_18          4Fe-4S dicluster domain
      0.019   15.2  15.1      0.027   14.6  10.8    2.8  3  Fer4_9           4Fe-4S dicluster domain
      0.085   13.0  13.2      0.057   13.6   8.4    2.9  2  Fer4_21          4Fe-4S dicluster domain
       0.32   11.2  20.3      0.049   13.7   2.5    2.8  2  Fer4_6           4Fe-4S binding domain
       0.42   11.2  22.7      0.087   13.4   1.9    3.2  2  Fer4_4           4Fe-4S binding domain
        1.8    9.2   6.5         19    5.9   1.8    2.6  2  Fer4_13          4Fe-4S single cluster domain of Ferredoxin I


Domain annotation for each model (and alignments):
>> CCG  Cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.67   8.6e+02      69      82 ..      17      30 ..       9      32 .. 0.84
   2 !   40.8   0.4   1.5e-13   1.9e-10       3      84 ..     177     260 ..     175     261 .. 0.93
   3 !   45.1   0.0   6.7e-15   8.6e-12       1      85 []     308     392 ..     308     392 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.67
         CCG 69 gadaivtacpgCll 82
                +a+ i+ ac +C +
  CCG91737.1 17 EAKEIIKACVHCGF 30
                6788999**99975 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 1.5e-13
         CCG   3 yfdgChllraaypevrkalkkllealgveleelekesCCGagggrsgkeelaealakrnvetaee...tgadaivtacpgCllql 84 
                 +f gC +    yp v +a++ l++ lg++l + ++e CCGa +++ +++++a++ +k+n++ + +   +g + iv+ ++ C  ++
  CCG91737.1 177 LFKGC-VEPVLYPSVFEATRSLFSSLGIQLIDVQNEGCCGALAYHLSYKKKAKEQMKNNIDLWTRyleKGINGIVVCSSACCQMI 260
                 699**.99999***************************************************999664589999**999999887 PP

  == domain 3  score: 45.1 bits;  conditional E-value: 6.7e-15
         CCG   1 vayfdgChllraaypevrkalkkllealgveleel.ekesCCGagggrsgkee.laealakrnvetaeetgadaivtacpgCllqlk 85 
                 va++ +C l++++ + +r  +++ll++lg++l +  +++ CCGa+g ++ +++  +++l + +++++ ++++ +i+ta+ gC lql+
  CCG91737.1 308 VAFHSPCTLQHGM-K-MRGRVEALLKKLGIHLIDIpDNHICCGAAGAYALFQKdYSQRLLDIKIKNILSKKPGVILTANVGCRLQLQ 392
                 89*****555544.4.4555899999999999999899*************999*******************************96 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   4.6   6.3e-14   8.1e-11       1      52 []      24      89 ..      24      89 .. 0.83
   2 ?   -1.8   0.0       3.8   4.8e+03       8      13 ..     252     262 ..     249     293 .. 0.61

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 6.3e-14
      Fer4_7  1 rCigCgaCvaaCpvkaieldeeenekgt..............ekveidpekClgCgaCvavCPtga 52
                +C++Cg+C a+Cp++ +  de + ++g+              ek++++ ++Cl C+ C+++CP+++
  CCG91737.1 24 ACVHCGFCNATCPTYQLISDELDGPRGRiylikaflegkasgEKTRMHLDRCLLCQGCETTCPSNV 89
                5************99999999888885555555555555666899******************986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.8
      Fer4_7   8 CvaaC.....p 13 
                 C +aC      
  CCG91737.1 252 CSSACcqmikD 262
                 77777444442 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   3.8   1.9e-13   2.4e-10       3      65 .]      23      89 ..      21      89 .. 0.84
   2 ?   -1.2   0.0       2.2   2.8e+03      11      16 ..     252     261 ..     218     304 .. 0.72

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.9e-13
      Fer4_8  3 ekCieCgaCqsaCpvlrrtkkhlldargeaae....dvqeeqvleeeealwsCttcgaCtevCpvgi 65
                ++C++Cg+C+++Cp+++   ++l  +rg+        + +  +++++  l++C+ c+ C++ Cp ++
  CCG91737.1 23 KACVHCGFCNATCPTYQLISDELDGPRGRIYLikafLEGKASGEKTRMHLDRCLLCQGCETTCPSNV 89
                79***************************99877773333333344889***************986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.2
      Fer4_8  11 CqsaC....p 16 
                 C saC     
  CCG91737.1 252 CSSACcqmiK 261
                 6666644440 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   4.9   1.7e-13   2.2e-10       1      60 [.      24      89 ..      24      90 .. 0.92
   2 ?   -3.1   0.4       9.5   1.2e+04      52      58 ..     252     258 ..     247     264 .. 0.66

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 1.7e-13
     Fer4_17  1 rCiqCgyClpeCpsyeaydnepkkllraakl......glleeaekeekaslCieCgeCerkCPqgl 60
                +C +Cg+C + Cp+y+ +++e + ++ +++l      g+  ++++++  ++C+ C++Ce+ CP+++
  CCG91737.1 24 ACVHCGFCNATCPTYQLISDELDGPRGRIYLikafleGKASGEKTRMHLDRCLLCQGCETTCPSNV 89
                5***************************9999988887777778889*****************98 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.5
     Fer4_17  52 CerkCPq 58 
                 C+++C q
  CCG91737.1 252 CSSACCQ 258
                 6666655 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   3.4   5.6e-08   7.1e-05       2      67 .]      25      88 ..      24      88 .. 0.79
   2 ?   -2.3   1.0       7.2   9.2e+03      47      64 ..     239     256 ..     213     259 .. 0.44

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 5.6e-08
     Fer4_16  2 CgtCgkCaevCPtnaikekkekeiearecisyntaek.kdlaedeekckkqeaitgCdiCqdvCPan 67
                C+ Cg C  +CPt  + ++   e++ ++   y  +   ++ a  e++++   ++  C+ C+++CP n
  CCG91737.1 25 CVHCGFCNATCPTYQLISD---ELDGPRGRIYLIKAFlEGKASGEKTRMHLDRCLLCQGCETTCPSN 88
                ***************9999...8999999999555431333444444445799************87 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.2
     Fer4_16  47 kckkqeaitgCdiCqdvC 64 
                 +++ ++ i g  +C  +C
  CCG91737.1 239 TRYLEKGINGIVVCSSAC 256
                 222223344444555555 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   2.5    0.0002      0.25       7      20 ..      24      37 ..      22      40 .. 0.92
   2 !   11.7   0.4   0.00014      0.18       5      22 ..      72      89 ..      69      90 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
                TSSS-THHHHHSTT CS
        Fer4  7 kCigCGaCvevCPv 20
                 C++CG C   CP+
  CCG91737.1 24 ACVHCGFCNATCPT 37
                6************8 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00014
                TTTSSS-THHHHHSTTTE CS
        Fer4  5 eekCigCGaCvevCPvgA 22
                 ++C  C  C+  CP ++
  CCG91737.1 72 LDRCLLCQGCETTCPSNV 89
                59*************985 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4  11.5   5.6e-06    0.0072       7      56 .]      23      86 ..      17      86 .. 0.85
   2 !   14.7   1.2   1.9e-05     0.024       5      23 ..      71      89 ..      67     113 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.6e-06
     Fer4_10  7 dtCirCgkCvkaCPadl..............tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56
                + C++Cg C++ CP++                 +   + +  +e+ r  +++C  c  C   CP
  CCG91737.1 23 KACVHCGFCNATCPTYQlisdeldgprgriyLIKAFLEGKASGEKTRMHLDRCLLCQGCETTCP 86
                68*************99***********987444455555666777889**************9 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.9e-05
     Fer4_10  5 dddtCirCgkCvkaCPadl 23
                  d+C+ C+ C + CP+++
  CCG91737.1 71 HLDRCLLCQGCETTCPSNV 89
                679**************55 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.6     0.001       1.3       2      14 ..      25      37 ..      15      46 .. 0.83
   2 !    7.8   0.1    0.0047         6       1      16 [.      74      89 ..      59     112 .. 0.83
   3 ?   -0.7   0.0       2.1   2.7e+03      10      22 ..     250     262 ..     217     279 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
     Fer4_22  2 ClsCgaCtlvCpt 14
                C++Cg C+++Cpt
  CCG91737.1 25 CVHCGFCNATCPT 37
                8888888888888 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0047
     Fer4_22  1 rClsCgaCtlvCptCs 16
                rCl C+ C ++Cp+ +
  CCG91737.1 74 RCLLCQGCETTCPSNV 89
                6999999999999765 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.1
     Fer4_22  10 lvCptCsCfdved 22 
                 +vC++  C  ++d
  CCG91737.1 250 VVCSSACCQMIKD 262
                 4666666666655 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2    0.0023         3      54      77 ..      18      41 ..       4      47 .. 0.78
   2 ?    5.8   0.0     0.012        16      50      76 ..      64      90 ..      50      96 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0023
     Fer4_18 54 kekgagdcidcescvkvcPtgidi 77
                +++    c++c++c + cPt   i
  CCG91737.1 18 AKEIIKACVHCGFCNATCPTYQLI 41
                4566778************97555 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.012
     Fer4_18 50 keerkekgagdcidcescvkvcPtgid 76
                + e+++     c+ c+ c + cP ++ 
  CCG91737.1 64 SGEKTRMHLDRCLLCQGCETTCPSNVQ 90
                55666777889************9886 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.2   0.00031       0.4      33      48 ..      20      37 ..       6      41 .. 0.72
   2 ?   14.6  10.8   2.1e-05     0.027       1      49 [.      24      88 ..      24      90 .. 0.84
   3 ?   -2.7   0.2       5.6   7.1e+03       8      14 ..     252     258 ..     250     274 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00031
      Fer4_9 33 e..eaCigCgaCveaCpk 48
                e  +aC++Cg C + Cp+
  CCG91737.1 20 EiiKACVHCGFCNATCPT 37
                24457************8 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.1e-05
      Fer4_9  1 kCtgCgaCveaCpa.gvvvedaaerkarlraase...............eaCigCgaCveaCpkg 49
                +C+ Cg C + Cp+ ++++++  +   r+   ++               ++C+ C+ C+  Cp++
  CCG91737.1 24 ACVHCGFCNATCPTyQLISDELDGPRGRIYLIKAflegkasgektrmhlDRCLLCQGCETTCPSN 88
                6***********86255666667777777777778999999999999**9*************97 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.6
      Fer4_9   8 CveaCpa 14 
                 C +aC +
  CCG91737.1 252 CSSACCQ 258
                 6666644 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   8.4   4.4e-05     0.057       6      52 ..      23      86 ..      18      91 .. 0.77
   2 ?   -2.0   0.2       3.2   4.1e+03      16      26 ..     250     260 ..     240     265 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-05
     Fer4_21  6 dkCigCgkCliaCedtshqai...................eidaktvlkvvedeCvGCnlCssvCP 52
                + C++Cg C  +C+  ++q i                    +++ +++++  d+C  C+ C + CP
  CCG91737.1 23 KACVHCGFCNATCP--TYQLIsdeldgprgriylikafleGKASGEKTRMHLDRCLLCQGCETTCP 86
                47************..5****9977777777776666553222233447778************** PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.2
     Fer4_21  16 iaCedtshqai 26 
                 ++C+ ++ q i
  CCG91737.1 250 VVCSSACCQMI 260
                 45555555555 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.5   3.8e-05     0.049       8      22 ..      24      38 ..      22      41 .. 0.86
   2 ?   11.1   1.0   0.00027      0.34       7      22 ..      73      88 ..      69      90 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.8e-05
      Fer4_6  8 kCigCgdCvrvCPeg 22
                +C++Cg C + CP++
  CCG91737.1 24 ACVHCGFCNATCPTY 38
                7************74 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00027
      Fer4_6  7 dkCigCgdCvrvCPeg 22
                d+C+ C  C++ CP +
  CCG91737.1 73 DRCLLCQGCETTCPSN 88
                99************87 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.9   6.8e-05     0.087       2      16 ..      23      37 ..      22      42 .. 0.91
   2 ?   12.7   1.9   0.00011      0.14       2      17 .]      73      88 ..      72      91 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.8e-05
      Fer4_4  2 erCigCgsCvaaCPq 16
                + C++Cg C a+CP+
  CCG91737.1 23 KACVHCGFCNATCPT 37
                57************6 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00011
      Fer4_4  2 erCigCgsCvaaCPqg 17
                +rC+ C  C+ +CP++
  CCG91737.1 73 DRCLLCQGCETTCPSN 88
                9*************75 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   1.8     0.015        19       5      18 ..      24      37 ..      22      44 .. 0.90
   2 ?    5.0   0.2     0.028        35       4      18 ..      73      87 ..      72     109 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.015
     Fer4_13  5 tCiacgaCvelaPd 18
                 C+ cg C +++P 
  CCG91737.1 24 ACVHCGFCNATCPT 37
                6************6 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.028
     Fer4_13  4 dtCiacgaCvelaPd 18
                d+C  c+ C  ++P 
  CCG91737.1 73 DRCLLCQGCETTCPS 87
                79************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3017.71
//
Query:       CCG91738.1  [L=358]
Description: Glycolate dehydrogenase, FAD-binding subunit GlcE [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-16   60.9   0.0    1.6e-16   60.3   0.0    1.3  1  FAD_binding_4  FAD binding domain
    0.00048   19.8   0.0    0.00071   19.3   0.0    1.2  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
  ------ inclusion threshold ------
      0.019   14.5   0.1       0.12   11.9   0.0    2.0  2  DUF2067        Uncharacterized protein conserved in archaea (


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   2.6e-20   1.6e-16      22     138 ..      25     141 ..      12     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 2.6e-20
                    HCTSCEEEESSSTTEE.STTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSG.GGTTCGSBHHHTTTTT-EETTEEG CS
  FAD_binding_4  22 eaglpvlvrGgGssll.gqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllgle.pgsgipgtvGGaiatnagGygsek 115
                    + + ++ ++GgG++   g +    g  +++s+ ++i+++d++e  +tv++G+++  l++ l+++g+ l++e p  g+ +tvGG++a + +G+ +  
     CCG91738.1  25 SLKEKIKIIGGGTKERlGRK--VIGNPINVSENRGIITYDPAELFVTVKSGTPIVYLEAVLKQHGQYLPFEpPHLGEHATVGGVVACGLSGPSRPY 118
                    45668889999999886777..5899999999***************************************889999******************* PP

                    G--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4 116 yGlirdnvlglevvladGevvrl 138
                    +G+++d++l++++++++Gev+++
     CCG91738.1 119 KGALKDYLLKVRLINGKGEVLTF 141
                    ********************997 PP

>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.2e-07   0.00071     216     249 ..     320     353 ..     318     354 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.2e-07
                    -----------THHHHHHHHHHHH-TT--BSTT- CS
  FAD-oxidase_C 216 kkaylerekgeeglalmrriKaalDPkgiLNPgk 249
                    k++ l    + +++ +++r+K+a+DP g+LNPg+
     CCG91738.1 320 KEETLASPLDTALMRIHKRLKEAFDPFGLLNPGR 353
                    5666666678889999*****************7 PP

>> DUF2067  Uncharacterized protein conserved in archaea (DUF2067)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.1     6e+02      37      97 ..      30      87 ..      10      92 .. 0.65
   2 ?   11.9   0.0   2.1e-05      0.12       6      53 ..     191     236 ..     188     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.1
     DUF2067 37 ievyGtekeikdiirrikellreklkkekrglfkyslsdllreagapvppdvLvdaLkllG 97
                i+++G  ++ +  +++i + ++    +e rg+ +y+  +l+  ++   p+  L  +Lk  G
  CCG91738.1 30 IKIIGGGTKERLGRKVIGNPINV---SENRGIITYDPAELFVTVKSGTPIVYLEAVLKQHG 87
                44555555555555555555555...56677788888888877777777777777777665 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.1e-05
     DUF2067   6 eeeleeflekise.kiksaeevkievegnrllievyGtekeikdiirri 53 
                   e+++fl+ i    +         + +nrl+++v G+ek++++++++i
  CCG91738.1 191 ATEALRFLSIIAAkYF---PLTASCYYNNRLYVRVSGYEKSVRRAAKEI 236
                 5688888888887444...4444445679***************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2739.23
//
Query:       CCG91739.1  [L=494]
Description: Glycolate oxidase subunit glcD [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-62  211.9   0.0    1.4e-62  211.6   0.0    1.1  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    2.5e-40  137.4   0.5    2.5e-40  137.4   0.5    1.7  2  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.6   0.0   1.5e-66   1.4e-62       2     249 ..     226     465 ..     225     466 .. 0.98

  Alignments for each domain:
  == domain 1  score: 211.6 bits;  conditional E-value: 1.5e-66
                    -SEEEEEEEEESSHHHHHHHHHHHHHHT---SEEEEE-HHHHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE.. CS
  FAD-oxidase_C   2 pearavalvafpsfeaavkavreiaqagiipaalelmdkkaldlveatkgakkglpdeeealllvefegddeeeaeeelealveaileatgaadvl 97 
                    pe  ++++  f+++++a+k+v++i+++gi pa le+mdk  +++v++++++  g+p++++a+ll+e++g   ee+eee + lve+++ + ga+++ 
     CCG91739.1 226 PECAKLVVGCFDDVTKASKTVSQIIASGIVPAGLEIMDKLVIEAVQSYIQV--GFPTSAAAVLLCELDGML-EEVEEEYR-LVEQMMIQMGAKEII 317
                    6667777888*****************************************..******************.9*******.*************** PP

                    ........ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEEETTEEEEEEEEEEE..--TT--THHHH CS
  FAD-oxidase_C  98 vaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyglevvlfgHagdgnlhlyilfdladeaeeeraeklvd 193
                    ++++e+e+  lwkaRk+a+p    a+++ ++ ++++D ++P++ la ++++i +l+++y+l+v +++Hagdgn+h++il+d + ++e+er+e l +
     CCG91739.1 318 ISKNEEERLLLWKARKSAFP----AAGRISPDYYCMDGTIPRKSLAFVLKRIAELAAQYNLRVGNVFHAGDGNIHPLILYDNSIAGEMERVESLGE 409
                    ********************....************************************************************************ PP

                    HHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT- CS
  FAD-oxidase_C 194 evvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgk 249
                    ++ +l+ve+gGsi+gEHGvGl+k   +  +++ e+++ ++r+K+alDP+ +LNPgk
     CCG91739.1 410 KILELCVEVGGSITGEHGVGLEKLGPMCFQFSLEEIQQFHRLKRALDPNALLNPGK 465
                    *******************************************************9 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4   0.5   2.8e-44   2.5e-40       1     138 [.      51     189 ..      51     190 .. 0.98
   2 ?   -2.8   0.0      0.53   4.7e+03     100     120 ..     418     437 ..     415     440 .. 0.76

  Alignments for each domain:
  == domain 1  score: 137.4 bits;  conditional E-value: 2.8e-44
                    EEEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTT CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsg 95 
                    p avv p+++ee+  +l ++++ g+p++vrGgG++l+g+a+  +gg+vl+ls++n+ileid+ +++a+ve+Gvt  ++ + +a +gl + ++p+s+
     CCG91739.1  51 PLAVVIPQKIEEILVILSACKRFGVPIVVRGGGTGLSGGATpVEGGIVLSLSKFNQILEIDPVNRIARVEPGVTNMQVSQSAASYGLYFAPDPSSQ 146
                    789**********************************999999***************************************************** PP

                    CGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  96 ipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                    i +t+GG+ia+nagG ++ kyGl+++nvl  ++++ +Ge+v +
     CCG91739.1 147 IACTIGGNIAENAGGIHCLKYGLTVNNVLAIKMMTVEGEIVSI 189
                    ****************************************986 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.53
                    HHHTTTTT-EETTEEGG--HH CS
  FAD_binding_4 100 vGGaiatnagGygsekyGlir 120
                    vGG i +  +G g ek G+++
     CCG91739.1 418 VGGSITG-EHGVGLEKLGPMC 437
                    7777755.8999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 3962.32
//
Query:       CCG91740.1  [L=55]
Description: hypothetical protein MFUM_200055 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 449.25
//
Query:       CCG91741.1  [L=156]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.02   13.2  12.7      0.024   12.9  12.7    1.0  1  DUF2070   Predicted membrane protein (DUF2070)
       0.51   10.0  12.4       0.11   12.2   1.4    2.3  2  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  12.7   2.7e-06     0.024      24     164 ..      11     147 ..       4     152 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.7e-06
     DUF2070  24 lalligllaflssklfgillfglpalvaflltlpvlrilggr.ltykrs.lflalltelivviisllaillsallqalvllalvlslalvfalrllvlv 120
                 +   ++++++++s ++g++ + l +l + ++ + +++il+ r l+   +  +l l+   i++++s+l++l+    + +  ++  +++ l ++l ll++ 
  CCG91741.1  11 ITPTTDAISYRNS-FQGYISISLLLLGSSIASYFAIQILNVRkLKA--KpDTLTLVLFSIFALFSFLGMLFW---KPIPEDYRWIGILLGLSLLLLLIK 103
                 5566789999999.8************************9994444..446666677777777799999977...888999999*************** PP

     DUF2070 121 avsdesllkavlpaliqpllailllvlyfspesfllllllslif 164
                  +s +++   +lp++++pl ++ l +l+ ++  fl++++++l+ 
  CCG91741.1 104 RFSPRTIHPKILPSVLIPLGIVSLHYLVHEKIEFLIVFFVTLFA 147
                 ****************************5555555555554443 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.4   1.2e-05      0.11       3      55 ..      28      84 ..      26      87 .. 0.89
   2 ?    4.5   2.6    0.0027        24       9      33 ..      88     127 ..      83     152 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.2e-05
     DUF4131  3 lplalvllalllllllllllllrr....rprrrvllllllllllallgfalrapqpn 55
                ++++l+ll++ ++ ++++ +l+ r    +p   +l+l+++++l+ +lg++++ p p+
  CCG91741.1 28 ISISLLLLGSSIASYFAIQILNVRklkaKPDTLTLVLFSIFALFSFLGMLFWKPIPE 84
                68899****************999**9999999999999999999999999998775 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0027
     DUF4131   9 llalllllllllllllrr...rprrrv............l 33 
                 ++++ll l lllll++r+     ++++            l
  CCG91741.1  88 WIGILLGLSLLLLLIKRFsprTIHPKIlpsvliplgivsL 127
                 4555555555555665333443333333333333333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1339.43
//
Query:       CCG91742.1  [L=514]
Description: Malate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.2e-123  410.8   0.0   8.2e-123  410.4   0.0    1.2  1  Malate_synthase  Malate synthase
    3.1e-05   23.2   0.0     0.0032   16.6   0.0    2.3  2  HpcH_HpaI        HpcH/HpaI aldolase/citrate lyase family
    0.00089   18.5   0.0       0.83    8.7   0.0    2.4  2  C-C_Bond_Lyase   C-C_Bond_Lyase of the TIM-Barrel fold


Domain annotation for each model (and alignments):
>> Malate_synthase  Malate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.4   0.0  1.4e-126  8.2e-123       2     524 ..      11     513 ..      10     514 .] 0.96

  Alignments for each domain:
  == domain 1  score: 410.4 bits;  conditional E-value: 1.4e-126
                      CCCCHHTHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH.HSHHHCCTCCCH-TSS---S-EECCCCE-TCCCCCCC-CCHC CS
  Malate_synthase   2 dfvkeevleaaeilteealefvaelvrdltprrrelLeeRdelqaeidkge.lndflketkylreepewktatlhielqdrrveiiGkadrkmi 94 
                      ++v+++++e ++il+ eal+fva+l+r++   r elLe+R+++q+++d+ + + +fl+et  +r e++w++a+l+++lq r+vei G a    +
       CCG91742.1  11 TIVGSYHKEWEKILSYEALRFVASLHRQFDALRLELLERRKKIQKALDNNSlSLNFLSETRLIR-EGKWEIAALPQNLQERKVEILGTASLDFL 103
                      689999*********************************************888**********.***************************** PP

                      CCCCCCSSSEEEEESSTTS--HHHHHHCCHHCCCHCCTTT-EEEET-TSEEEEETTSESSSSEEEEE---TTTEEEEEECTTCEEEHHHHHHHH CS
  Malate_synthase  95 inalnesaittiaDfEDsvapnwenlvkGqlnledavrgrisfrkenkdksYklndglegrsllfvRnrGwhltekhilvdGeeisegilDfgl 188
                      ++a+ ++a+  i+D EDs++p+wen+++ q+ l d  r++ + ++      Y        ++ll vR+rG hl ekh+ vdG+++ ++++Dfgl
       CCG91742.1 104 KDAVQSGANGIIIDLEDSLSPTWENIIESQISLFDFLRQKNDSHTS-----Y--------QPLLHVRPRGMHLLEKHVHVDGKPLAASLFDFGL 184
                      *********************************9988776655543.....4........489******************************* PP

                      HHHHHHHHCSCCTTSSEEEEE-S-SSHHHHHHHHHHHHHHHHHCTSSTTSCEEEEEE-SHHHHTTHHHHHHCTTTTEEEEEE-CHHHHHHHHHH CS
  Malate_synthase 189 iffhnakelklsrgggpyivlPKmegpqEaalwnevFsraedllglprgtikatvliEtlraslnldeiiyelrdrvaglNcGrlDyifseikt 282
                      ++fhnak l ++r++gp+++ PK+e+  Ea++w+++Fs+ e++l lp g+i+atv+iEt++a+++++ei++ +++++  l     Dy+fs ik+
       CCG91742.1 185 YVFHNAKLL-VERQSGPFFYVPKIENFYEAEFWSSLFSFTENALSLPSGSIRATVIIETITAVFEMEEILHSMKNHAWALSVDPRDYVFSVIKK 277
                      *********.************************************************************************************ PP

                      TCCCCGCB...CGGGGCCSHHHHHHHHHHHHHHHHTT.CCCCCCCTCSEECCCEHHHCCCHHHHHHHCHHHHHCT-SEEEESSHHHHHHHHHHH CS
  Malate_synthase 283 lreagdmvLPdRkavtktapfikaYekllvktchkrgvhamgGlaakipikkdmeaneellekvredKlrevraGadgaWvahPtlatlaaevf 376
                      +r   + ++PdR+++t++a+f++aY  llvktc kr + a+gG++   p+   m + +el+ek++ +K+r++  G+dg+ v hP l+++++++f
       CCG91742.1 278 FRRSREALMPDRSEITMDANFLQAYRMLLVKTCRKRRALAIGGVSLLEPSV--MYEDAELFEKIKFEKERDIALGMDGCIVNHPKLVPVVRDAF 369
                      ********************************************9999875..77889************************************ PP

                      HHCH.CHCHHCCHHTTTHHHHHHHHCS..--BBHHHHHHHHHHHHHHHHHHHHHHCT-SSEEETTEEESHHHHHHHHHHHHHHHHTTSC-CCHS CS
  Malate_synthase 377 eevd.vapnQielakeevritaddLlt.kipeaeeteeglrnnvqvglqYvvaWlrgvGcvpiihLmEDaATaeiSrqqlaqWirhgvvlkeqg 468
                      ++v  +a   +++ +e+  ++ + Ll+ kipea +te g+rnn++    Y+ +Wl+g G+v i++L ED   aei r+ql+qW++ ++ ++ + 
       CCG91742.1 370 KNVSrKATTDAKVLSESIIVQPEALLNfKIPEA-ITESGVRNNISLLFMYLSSWLSGHGAVDIFNLKEDISSAEIARSQLWQWVHLEAEMDSE- 461
                      ***977788889999999999******999997.89********************************************************6. PP

                      HCHHHHHHHHHHHHHCCHHHHHHHCCTTHHHCHHHHHHHHHTTTCCC-CHHHHHCC CS
  Malate_synthase 469 vkvslelmaklvdeenarleelgkedeayreaakllkkeataeefadfltlkayke 524
                         ++el+    +ee + l    k+ +  +++ +++++ +  ++f +fltl  y+ 
       CCG91742.1 462 IPLDNELFLCWKTEEKELL----KHLPFLDQVDRVIEEVVLTKDFVEFLTLITYEY 513
                      ********99999999944....467788999999****************99986 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0031        18      10      35 ..      99     124 ..      94     166 .. 0.84
   2 !   16.6   0.0   5.3e-07    0.0032      88     171 ..     202     300 ..     189     359 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0031
                 SHHHHHHHCTC--SEEEEESSTSSSH CS
   HpcH_HpaI  10 naalaekaaiagaDsvliDlEdaval 35 
                 + + +++a  +ga  ++iDlEd+ + 
  CCG91742.1  99 SLDFLKDAVQSGANGIIIDLEDSLSP 124
                 5678899***************9754 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 5.3e-07
                 EEESS--SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHH.TST.TEEEEEE-HHHHHHHTT-TTSTTSHHHH.............H CS
   HpcH_HpaI  88 vlvPkvetaeealevvsalrepekgirganketrllaqiEsaegvknaeeIa.ave.gldgvflGaeDlsadlgtkrspegtevl.............d 171
                 + vPk+e+  ea+   s++   e+  +   +++r  + iE+ ++v ++eeI+ +++    ++ + + D++ ++  k   + + ++             +
  CCG91742.1 202 FYVPKIENFYEAEFWSSLFSFTENALSLPSGSIRATVIIETITAVFEMEEILhSMKnHAWALSVDPRDYVFSVIKKFRRSREALMpdrseitmdanflQ 300
                 78**************************************************64441445566789999999866666666666544445555555552 PP

>> C-C_Bond_Lyase  C-C_Bond_Lyase of the TIM-Barrel fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00014      0.83      27      91 ..     106     168 ..      98     179 .. 0.75
   2 !    7.0   0.0   0.00046       2.7     251     297 ..     337     384 ..     322     407 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00014
  C-C_Bond_Lyase  27 qklegltslvlclEDavseeeveaAeenlkellkelaeaekekekeelpllFvRvRspeqlkell 91 
                        +g++ ++++lED+ s +  +  e++  +l++ l+++++ ++++  pll vR+R ++ l++ +
      CCG91742.1 106 AVQSGANGIIIDLEDSLSPTWENIIESQ-ISLFDFLRQKND-SHTSYQPLLHVRPRGMHLLEKHV 168
                     55678999*********98766655554.456677777544.47899*********999887755 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00046
  C-C_Bond_Lyase 251 dglirEvalDkanGlvGKtvIhPsqialvqall.vVskeeyedAldil 297
                     +++  E + D+a G+ G  v hP+ +++v+ ++  Vs++  +dA+   
      CCG91742.1 337 EKIKFEKERDIALGMDGCIVNHPKLVPVVRDAFkNVSRKATTDAKVLS 384
                     456668999********************8765279999999997544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3642.67
//
Query:       CCG91743.1  [L=406]
Description: Isocitrate lyase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-93  311.5   0.9    7.3e-54  183.1   0.0    2.2  2  ICL         Isocitrate lyase family
    1.4e-16   60.7   0.0    2.7e-16   59.8   0.0    1.5  1  PEP_mutase  Phosphoenolpyruvate phosphomutase


Domain annotation for each model (and alignments):
>> ICL  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.1   0.0   8.1e-58   7.3e-54       6     252 ..      10     244 ..       5     247 .. 0.89
   2 !  127.5   0.2     6e-41   5.3e-37     353     507 ..     246     402 ..     244     406 .] 0.93

  Alignments for each domain:
  == domain 1  score: 183.1 bits;  conditional E-value: 8.1e-58
                 HHHHTSGGGGG---SS-HHHHHHH--SS----THH.HHHHHHHHHHHHHHHHT--EEEEB--SHHHHHHHHHH.-S-EEE-HHHHHHH--TT----SS- CS
         ICL   6 kkwwsdsrwrktkrvysaedivskrGnlkieyass.eqakklfklleeheaektasktfGaldpvqvtqmaky.ldtiyvsGwqssstastsnepspdl 102
                 ++w  ++rw+  kr+y+a d+v   G+l iey+ + + a  l++ll+++    +   + Ga+  +q  qm k  l +iy sGwq ++ a  ++e  pd+
  CCG91743.1  10 EEWACSDRWKGIKRAYTAADVVRLSGSLSIEYTLArHGATLLWELLHDK----EPVIALGAVTGMQAVQMVKAgLKAIYCSGWQIAADANLAQETYPDF 104
                 568889**************************96615688899999764....567889************9669************************ PP

                 S-S-TTHHHHHHHHHHHHHHHHHHHHHHHHHSS-HHHHTTS--------EEEE-TT-SSSHHHHHHHHHHHHHTT-SEEEE-SB-TT---------EEE CS
         ICL 103 adypmdtvpnkvehlflaqlfhdrkqkeerlkvkkeereklanvdylrpiiadadtGhGGltavvkltklfierGaaGihiedqasgtkkcGhmaGkvl 201
                 + yp +++p  v+ +  +       ++ + +    +  e+   ++y+ pi+ d+++G+GG    + ltk +ie G a +h edq +++kkcGhm  kvl
  CCG91743.1 105 SLYPSNSMPLLVKRINASL------RRADAI----DFAENKKDINYFVPIVVDGEAGFGGALNAFELTKWLIEAGVAAVHFEDQLPSAKKCGHMRSKVL 193
                 *********9998765433......233333....334455689******************************************************* PP

                 --HHHHHHHHHHHHHHHHHTT---EEEEE--GGGEEEES-TT-GGGGGGEE CS
         ICL 202 vpiqehinrlvairaqadilgsdllvvartdseaatlitstidtrdhafil 252
                 vp +e +++l+a+r++ dilg+ ++++artd++ a++++s +d+rd +fi 
  CCG91743.1 194 VPTREALQKLIAARLASDILGVSTIIIARTDADGASFLSSDVDERDREFIK 244
                 *************************************************95 PP

  == domain 2  score: 127.5 bits;  conditional E-value: 6e-41
                 --TT--EEE--SHHHHHHHHHHHTTS-SEEE---SS--HHHHHHHHHHHHTT-TT-EEEEE--SSS-GGGTS-HHHHHSHHHHHHHTTEEEEEETTHHH CS
         ICL 353 rvreGyyrykGgtqcsvvravafapyadliwmesklpdyaqakefaeGvkakvpeqklaynlspsfnwkkamsadeqetyikrlaklGyvwqfitlaGl 451
                 r+ eG++  +Gg + ++ ra+ fapy+d++w+es+ pd+  a+ fae ++ ++p + layn spsf wk+ m++++  ++ +rla+ Gy  q i+laG+
  CCG91743.1 246 RTEEGFFEIQGGLDLAIARALVFAPYVDILWFESSKPDLLSAQRFAEAIHRTFPGKLLAYNCSPSFYWKEYMKEEQIASFHNRLASWGYKLQVISLAGF 344
                 99************************************************************************************************* PP

                 HHHHHHHHHHHHHHHHHTHHHHH..HHTHHHHHHHT-GGGSHHHHHTHHHHHHHHHHH CS
         ICL 452 htnalisdkfakdyakrGmkayg..eevqeeeidnGvdvvkhqkwsGaeyidellklv 507
                 h+ +    ++ak+  ++G+ ay+  +e ++e  ++G   ++hq   Ga y++ + +++
  CCG91743.1 345 HSLSYGMFTMAKEIKEKGLVAYSlfQEKEKEAQQEGYTALSHQHEVGASYFELIYNTI 402
                 **********************8334444455678***************99887665 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0     3e-20   2.7e-16       4     146 ..      55     225 ..      51     270 .. 0.85

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 3e-20
  PEP_mutase   4 LhakgeplvlpnawDalsakiveeagfkalatsSlavaasl.....GvpDgeelpleellaavraiaevvs.................lPlivDledGy 80 
                 Lh+k ep++++ a  ++ a  + +ag ka+ +s++++aa +      +pD +  p +++  +v++i ++++                 +P+ vD e+G+
  CCG91743.1  55 LHDK-EPVIALGAVTGMQAVQMVKAGLKAIYCSGWQIAADAnlaqeTYPDFSLYPSNSMPLLVKRINASLRradaidfaenkkdinyfVPIVVDGEAGF 152
                 8888.9********************************8542222479999********99*****99999999************************* PP

  PEP_mutase  81 gespeevaetvrrliaaGvvgvniEDk.....kknd.aerqlldieefaekiaaaraaaeeag..fvinARtda 146
                 g  + +  e  + li+aGv++v++ED+     k++  + + l++ +e+++k+ aar a +  g   +i+ARtda
  CCG91743.1 153 GG-ALNAFELTKWLIEAGVAAVHFEDQlpsakKCGHmRSKVLVPTREALQKLIAARLASDILGvsTIIIARTDA 225
                 *9.55666888*****************987544454667777********************999*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2806.86
//
Query:       CCG91744.1  [L=733]
Description: Glycogen debranching enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-48  164.6   0.0    2.9e-48  164.0   0.0    1.2  1  GDE_N_bis        N-terminal domain of (some) glycogen debranc
    1.1e-13   50.9   0.0    3.9e-13   49.1   0.0    1.7  1  GDE_C            Amylo-alpha-1,6-glucosidase
    0.00049   19.4   0.0    0.00074   18.9   0.0    1.2  1  Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin gly
     0.0061   15.8   0.1       0.42    9.7   0.0    2.2  2  DUF608           Glycosyl-hydrolase family 116, catalytic reg
  ------ inclusion threshold ------
      0.015   14.2   0.0      0.041   12.7   0.0    1.6  2  Trehalase        Trehalase
      0.099   11.3   0.0       0.67    8.6   0.0    2.0  2  Glyco_hydro_100  Alkaline and neutral invertase
       0.12   11.2   0.0        0.2   10.5   0.0    1.2  1  Glyco_hydro_125  Metal-independent alpha-mannosidase (GH125)


Domain annotation for each model (and alignments):
>> GDE_N_bis  N-terminal domain of (some) glycogen debranching enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.0   0.0   1.1e-51   2.9e-48       1     190 [.      37     227 ..      37     230 .. 0.97

  Alignments for each domain:
  == domain 1  score: 164.0 bits;  conditional E-value: 1.1e-51
   GDE_N_bis   1 lkdgdlflvtdtdGdiaeegegsqGlFcrDtRfLsrlelqingespvllsssaekgnsalsvlltnpeledeeggipaetigirrervv.ngglfeele 98 
                 lk++++f v+d++Gdi+  g g+qGl++r tR+L++  l i++  p++lss+ +++n++++++l npe+e+e++ i+++t+ i r++++ + +l+ee+ 
  CCG91744.1  37 LKHKETFGVFDRRGDIQPLGLGDQGLYYRGTRHLNESVLFIEKSYPLFLSSTIREDNAMFTIDLSNPEIEKEGKIIRQQTLLITRSKFIwESCLYEEIC 135
                 89*********************************************************************9999**************888******* PP

   GDE_N_bis  99 ltNynttpvefelslsfdaDFaDlfevrgfrrekrgkllrleaedeelrlayrgldgvvretriqfsaqpdtvkggtatwrlkLaphetwkl 190
                 + Ny++ pv++ l ++f+aDF+Dlfevrg +r+krg+ll ++ +++++ ++y gld+ +r+t + f+++p ++ ++ a   l+L p++++ +
  CCG91744.1 136 VCNYGEVPVQVILLFKFNADFVDLFEVRGTKRKKRGNLLDPVLTEQSVLFQYLGLDNILRQTLLFFDPKPINLCATSAAVSLELIPRKEVLI 227
                 *********************************************************************9999999********99998766 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   1.5e-16   3.9e-13      17     381 ..     293     660 ..     274     662 .. 0.75

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 1.5e-16
       GDE_C  17 eeekgvsliAGlpwFsd.WGRDtfIa.LsGllLvtgrfeeAreilltFaktlr....................hGliPNlldegqealyntvdaslwli 93 
                 e+++g+   AG pwF    GRD +I+ L+ l L++++    + +l+ F+ + +                    +G + Nl +     +y ++da+  ++
  CCG91744.1 293 ETPQGPFPYAGVPWFCTpFGRDGIITtLECLWLAPEL---GKGVLS-FLAANQakdfdieadaepgkilhetrEGEMANLGEIPFRKYYGSIDATCLFL 387
                 667777779*******88******9647888887654...333333.32222224566666677666777777999999988899999*********** PP

       GDE_C  94 eaiekYleyagdaeilrriypvlqeilqkyvqGtkykigldeedglisager....lnqlTWmD......akvkgepvtPRdGkaveinaLwyaaLkil 182
                     +Y++ + d +++++i+p ++ +l +  +       +d  dg++  + r    l  + W D       k  + pv P   + +e+++ ++aa k +
  CCG91744.1 388 LLAAEYYQRTADRKFIEEIWPSIELALLWIDRYG----DVD-GDGFVEYRRRssrgLTNQGWKDsfdsvfQKDGSFPVGPI--ALCEVQGFVFAAKKKI 479
                 *********************9998887655433....588.888887665511113566799998864333333466664..569************* PP

       GDE_C 183 eelaekalge.akkssykelaekikesfekkFwdeaaaavakreilaDvlksseekdlslRpNflialslapellseekakkvlek.aeeeLltplGlk 279
                 + la+  lg+ + + +  + ae +ke+fek+Fw       ++ + +a  l+ ++ek + l  N+ + l     + +++ka+ + +  ++ +  t +G++
  CCG91744.1 480 AYLAS-VLGQiSLHDRLLKEAEILKEKFEKEFWV------EELSSYALALDGRKEKCKVLASNAGLCLYT--GIAKQDKAELIGKLlMSDKFFTGWGIR 569
                 *****.6666477888999999***********9......7888888888888889999****9987754..4444444444433325679******** PP

       GDE_C 280 tLdpedpeYkgnYdgsedsrdaaYHqGtvWvwllgsyveallkfgeklgkskealeevkalLeglekhleeaglgslsElfd.......gdaellpkgc 371
                 t+++++ +Y+++           YH+G vW++  ++    +++ g k    + a++++k l+e          l++l+Elf        + ++l p +c
  CCG91744.1 570 TVASTEIRYNPI----------SYHNGSVWPFDTAFIAAGMMSYGMK----EMAINLFKGLFE----ATLFFDLQRLPELFGgiakrgqEGPTLYPVAC 650
                 *********995..........8**********99888888888886....667777776666....23334566677777655555437778999*** PP

       GDE_C 372 iaQAWSvael 381
                 +  AWS++++
  CCG91744.1 651 APHAWSSGAV 660
                 ******9986 PP

>> Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.9e-07   0.00074     100     221 ..     383     518 ..     356     557 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.9e-07
                      TTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTSBT............TB.--S-S--STT.......-SS----HHHH.HHHHHHHHH CS
  Bac_rhamnosid6H 100 adaivivpwelyetygDkeilkkqYesmkryldylkqrsdd...........gleelskfqlgDWldpe..ardgaaktekalv.ataylvrsl 179
                      +++ ++++ e+y+++ D+++++++++s++  l +++++ d            + ++l+++++ D  d    ++++    + al   + +++ + 
       CCG91744.1 383 TCLFLLLAAEYYQRTADRKFIEEIWPSIELALLWIDRYGDVdgdgfveyrrrSSRGLTNQGWKDSFDSVfqKDGSFPVGPIALCeVQGFVFAAK 476
                      67788999********************987777777776666799988775455888888888887769555566667889986789****** PP

                      HHHHHHHHHTTS..--HHHHHHHHHHHHHHHHHHB.-TTS-B CS
  Bac_rhamnosid6H 180 klvakiaellgkeedakkyaalaeelkaafnkkyldsetgsv 221
                      k++a +a++lg+    ++  ++ae lk++f+k+++ +e  s+
       CCG91744.1 477 KKIAYLASVLGQISLHDRLLKEAEILKEKFEKEFWVEELSSY 518
                      ***********************************8887755 PP

>> DUF608  Glycosyl-hydrolase family 116, catalytic region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00016      0.42     102     149 ..     384     432 ..     378     529 .. 0.86
   2 !    3.9   0.0    0.0098        25     289     326 ..     582     619 ..     564     626 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00016
      DUF608 102 lkfvLqvYRdyvitedkeflkemypkvkkvleklle.fDkdkdgliene 149
                 + f L     y+ t d++f++e++p+++ +l +  +  D d+dg++e +
  CCG91744.1 384 CLFLLLAAEYYQRTADRKFIEEIWPSIELALLWIDRyGDVDGDGFVEYR 432
                 556677777888999*********************77********965 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0098
      DUF608 289 svqseevWtgvtyalaatliqegmveegfktaegvyet 326
                 s +  +vW+  t  +aa ++  gm+e+++++ +g++e+
  CCG91744.1 582 SYHNGSVWPFDTAFIAAGMMSYGMKEMAINLFKGLFEA 619
                 55677899999999*******************99986 PP

>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.57   1.5e+03     172     209 ..     374     411 ..     368     424 .. 0.85
   2 ?   12.7   0.0   1.6e-05     0.041     311     454 ..     470     612 ..     460     627 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.57
                 BGGGTT---S--HHHHHHHHHHHCHCCHHHHHHHHHHH CS
   Trehalase 172 RsYYlsRSQPPlltdmvlrvyekteddallravlaalk 209
                 R YY s     l+  ++ ++y++t+d ++++++ ++++
  CCG91744.1 374 RKYYGSIDATCLFLLLAAEYYQRTADRKFIEEIWPSIE 411
                 77888877888999999***************999987 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE--EETTTTEE----BGGG.GHHHHCT-S-HHHHHHHHHHCHHHHCCCCCE CS
   Trehalase 311 allyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeagvylDYdlkkkkqtnyesatn.lvpLwaglaskeqaaklvakvlekleesgll 408
                  ++++++k+ia+++++lg+++   +  ++ae  k++ +k +W ee   y+   l  +k++ ++ a+n  + L++g+a++++a +l+ k l + + + + 
  CCG91744.1 470 GFVFAAKKKIAYLASVLGQISLHDRLLKEAEILKEKFEKEFWVEELSSYAL-ALDGRKEKCKVLASNaGLCLYTGIAKQDKA-ELIGKLLMSDKFFTGW 566
                 688999****************************************99974.4444454445555541589**********4.5555555555555555 PP

                 ESCCCC-SBSSS.-SSTTSTTEEEHHHHHHHHHHHHHTT-HHHHHHH CS
   Trehalase 409 vaegglgtsllk.sgrQWDyPngWaPlqilaveglerygeeelaerl 454
                    + ++ ++++     +    +W+  +  +  g+ +yg +e+a +l
  CCG91744.1 567 G-IRTVASTEIRyNPISYHNGSVWPFDTAFIAAGMMSYGMKEMAINL 612
                 5.344555554445556777788999999999999999999999877 PP

>> Glyco_hydro_100  Alkaline and neutral invertase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.13   3.3e+02     113     139 ..     379     405 ..     361     413 .. 0.91
   2 ?    8.6   0.0   0.00026      0.67     342     387 ..     569     614 ..     543     657 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.13
                      -HHHHHHHHHHHHHHHHHH---HHHHS CS
  Glyco_hydro_100 113 pvDsslWWiillraYvkatgdlslaee 139
                      ++D++  +++l+  Y ++t d+++ ee
       CCG91744.1 379 SIDATCLFLLLAAEYYQRTADRKFIEE 405
                      89**999***************99875 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00026
                      HHHHTS-GGG-TTBTTBT-B-GGGHHHHHHHHHHTT-HHHHHHHHH CS
  Glyco_hydro_100 342 rivtGsDpkntpwsYhngGsWpvllWllvaaalkterkelaekaie 387
                      r+v  ++ +  p sYhng  Wp    +++a ++ ++ ke+a + ++
       CCG91744.1 569 RTVASTEIRYNPISYHNGSVWPFDTAFIAAGMMSYGMKEMAINLFK 614
                      555667778899************9999999999999999876655 PP

>> Glyco_hydro_125  Metal-independent alpha-mannosidase (GH125)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.7e-05       0.2     121     150 ..     379     408 ..     350     421 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.7e-05
                      -HHHHHHHHHHHHHHHHHH---TT--HHHH CS
  Glyco_hydro_125 121 elDSlaaflqlsseyyeatgdleffeekwv 150
                       +D+ + fl l++eyy++t d +f+ee w 
       CCG91744.1 379 SIDATCLFLLLAAEYYQRTADRKFIEEIWP 408
                      59***********************98874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 4766.55
//
Query:       CCG91745.1  [L=342]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-23   83.5   0.0    1.9e-23   82.8   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    1.4e-14   54.7   0.0    2.5e-14   53.9   0.0    1.4  1  Glyco_trans_1_4  Glycosyl transferases group 1
    3.6e-11   43.3   0.3    6.4e-11   42.5   0.3    1.5  1  Glyco_transf_4   Glycosyltransferase Family 4
    1.4e-06   28.6   0.0    3.2e-06   27.4   0.0    1.6  1  Glyco_trans_1_2  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.014   15.8   0.0      0.024   15.1   0.0    1.4  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   5.4e-27   1.9e-23      13     152 ..     169     303 ..     166     318 .. 0.87

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 5.4e-27
                      TT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS.BSS CS
  Glycos_transf_1  13 ekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis.Egf 105
                      +k +++ +vgr+++eKg++++i+ ++++  +l+  +k+    ++ +++++ + +  l  ++ v+f+ge+ +e+++ ++ na ++++p  + E+f
       CCG91745.1 169 GKGNYLAFVGRISPEKGIERAIEIAKRVGMDLKIAAKV----DEVDKQYFLEVILPLFKKAPVEFIGEIGEEEKKVFFGNAYALLFPINWpEPF 258
                      678999********************986554444444....55668888889999************************************** PP

                      -HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHH CS
  Glycos_transf_1 106 GivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeai 152
                      G+v +EAma+g+pvi   +g ++e+v dg+tG++++++  e+ +++i
       CCG91745.1 259 GLVMIEAMACGTPVIGWRNGSVPEIVIDGQTGYIIHSV--EEGVKKI 303
                      ***********************************998..5555554 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0     7e-18   2.5e-14       3     128 ..     173     303 ..     171     306 .. 0.82

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 7e-18
                      EEEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---....HHHHHHHT.T-T.T.EEEE---..THHHHHHHH-SEEEE--...---SHHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkkdvrlvivGdgp..rpeeleelaa.gleer.veftGfv..edlaellaaadvfvaPs...egfglkl 87 
                       + fvGr++ ++kg++  +e ++++    + l i+ + +  +++ + e +   +++  vef G++  e+++ ++ +a  +++P+   e fgl++
       CCG91745.1 173 YLAFVGRIS-PEKGIERAIEIAKRVG---MDLKIAAKVDevDKQYFLEVILpLFKKApVEFIGEIgeEEKKVFFGNAYALLFPInwpEPFGLVM 262
                      689*****5.56*************9...56999996544333344334434233446********778*****************99****** PP

                      HHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHH CS
  Glyco_trans_1_4  88 lEamaaglpvVatdvggiaevv..gengllvppgdpealaeai 128
                      +Eama+g+pv+  + g ++e+v  g++g+++   ++e+ +++i
       CCG91745.1 263 IEAMACGTPVIGWRNGSVPEIVidGQTGYIIH--SVEEGVKKI 303
                      ***************999**99********98..777777766 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.3   1.8e-14   6.4e-11       1     109 [.      18     124 ..      18     177 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 1.8e-14
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllk.rekpDvvHahspaalgaallalrrr 94 
                     +GG er++++L+++L  +Ghe t++++gd+   ++    v  +p   ++ + +   ++ +++ l ++++ +e +D++H+h  ++++       +r
      CCG91745.1  18 YGGTERVIHYLTEELITLGHETTLFASGDSITKGKL---VSVIPESLRLQKHKKDPMVYHILMLEKVFQmAESFDIIHYHIDFFHFPF----SKR 105
                     7*************************9999999988...666777777777777778888888888876355********98888777....344 PP

  Glyco_transf_4  95 lgiplVltvHglye....k 109
                     ++ ++ +t+Hg  +    +
      CCG91745.1 106 SKTKHLTTLHGRLDlpdlT 124
                     89*********99654431 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0     9e-10   3.2e-06       9      89 ..     256     330 ..     244     333 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 9e-10
  Glyco_trans_1_2   9 espnlrlfEaaacGafaltddaegleelftpgkevilfedleelaekirylla.npeerraiaeaarervlaehtydhraeq 89 
                      e + l++ Ea+acG++++  +  +++e++ +g+++ +++++ee ++ki    + +++e+r       ++vl+++t ++ a+ 
       CCG91745.1 256 EPFGLVMIEAMACGTPVIGWRNGSVPEIVIDGQTGYIIHSVEEGVKKIMDIDRiDRKECR-------KHVLNHFTARKMAQS 330
                      67889*******************************************999766666666.......566666666666665 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   6.7e-06     0.024       1     114 [.      19     125 ..      19     151 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.7e-06
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvh..rlpvprrpspladlaalralrrllrqrrerpdvvhahs.ptaglaarla 91 
                      gG +r+++ l ++L  +Ghe t++++++           v v+  +l++   ++  +++ ++  l+ ++ q +e +d++h h  +   ++    
       CCG91745.1  19 GGTERVIHYLTEELITLGHETTLFASGDSITKG----KLVSVIpeSLRLQK-HKKDPMVYHILMLEKVF-QMAESFDIIHYHIdFFHFPF---S 103
                      8************************96555544....67777633333432.23345777899999998.899*******9954643332...3 PP

  Glyco_trans_4_4  92 rrrrgiplvvtlhglllrrgsga 114
                      + r +++++ tlhg+l  +  + 
       CCG91745.1 104 K-RSKTKHLTTLHGRLDLPDLTL 125
                      4.677899999997554333344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2332.76
//
Query:       CCG91746.1  [L=515]
Description: Phosphoenolpyruvate carboxykinase (ATP) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-205  682.2   0.0   3.6e-205  682.0   0.0    1.0  1  PEPCK_ATP  Phosphoenolpyruvate carboxykinase


Domain annotation for each model (and alignments):
>> PEPCK_ATP  Phosphoenolpyruvate carboxykinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  682.0   0.0    2e-209  3.6e-205       2     465 .]      17     482 ..      16     482 .. 0.98

  Alignments for each domain:
  == domain 1  score: 682.0 bits;  conditional E-value: 2e-209
                 -EEES--HHHHHHHHHHTTS-EE-TTS-EEE--TT--S--GGGEEEE--TTTTTTS-BTTTBEEE-HHHHHHHHHHHHHHHHTS-EEEEEEEE-SSTTT CS
   PEPCK_ATP   2 kvirnlsvaeLveealkreegkltstgalvvetgkktgRspkdkfiVedeetedkiwWgkvnkpiseekfealkekvleylkekelyvvdafagadpky 100
                 +++++lsvaeL+e+a+kr+e+ l+++g+lv++tg+++gR+pkdkfiV+d++t+++++Wgk+n+p+++ ++++lk+k+l+yl+++el++++++a+++p++
  CCG91746.1  17 QIYWDLSVAELYEQAIKRHEALLSASGSLVFHTGQYKGRTPKDKFIVKDQQTTEQVNWGKINQPFDPLSYKRLKSKILSYLQDRELFIQQCYACSNPNH 115
                 79************************************************************************************************* PP

                 -EEEEEEES-HHHHHHHHHHSBGGS-S-TTT-.--SEEEEEETT----HHHH--SSS-EEEEETTTTEEEEES---THHHHHHHHHHHHHHHHHTT-EE CS
   PEPCK_ATP 101 rlkvrviterawqalfvknllirpteeeleef.epdftilnapefkadpekdglnsetvvalnlekklvlilgteYaGEikKsifsvmnyllpkkgvls 198
                 r+++ ++ er+  +lf +nl+i +++ e + +  pdf++++ap f+adpe+d+++s ++++ln+++k++li+gt YaGEikK++f+v+n+llp+kgv++
  CCG91746.1 116 RINLWILSERPIYSLFSRNLFIVEKDPEKRMHlVPDFILIHAPGFRADPETDKTQSGAFIILNFAEKMILIGGTGYAGEIKKAVFTVLNFLLPQKGVFP 214
                 **********************99665555555****************************************************************** PP

                 EEEEEEE-T.TS-EEEEEE-TTSSHHHHH-BTTB-EEESSEEEE-SS-EEES-SEEEEE-TT--TTTSHHHHHHHS.TT-EEES-EE-TTT--EETT-- CS
   PEPCK_ATP 199 mhcsanvgekkgdvalfFGLSGtGKTtLsadperkligdDehgwsdegvfniegGcYaKtidLskekepeiynair.fgavlENvvldeetrevdfddt 296
                 mhcsan g++ +d+a+fFGLSGtGKTtLs d++r+ligdDehgw+d+gvfn+egGcYaK+i++ske epeiy+a+  fg++lENv+++++tre+df+d+
  CCG91746.1 215 MHCSANFGKDPEDSAIFFGLSGTGKTTLSIDSTRNLIGDDEHGWDDSGVFNFEGGCYAKVIRISKEGEPEIYQAALrFGTILENVIINPQTREIDFNDD 313
                 ************************************************************************98766********************** PP

                 SS-S--EEEEEGGGSSSB-TTSEE--EEEEEEEE--TTS-S-SEEEE-HHHHHHHHHH-EEEE-----------EEEE-GGG-GGG-SS-HHHHHHHHH CS
   PEPCK_ATP 297 slteNtrvaypiehienakeesvaghpkniifLtadafgvlPpvskLtkeqamyhFlsGytakvaGtergvtepeatFsacfgapFlplhpteyaelLa 395
                 slteN+r+a+pie+i+n++ +  +ghpknii+L++dafgvlPpv+kL++eqa+y+Fl+Gytak+aGte+g++ep+a Fs cfg+pFlpl+p+ ya++++
  CCG91746.1 314 SLTENSRAAFPIEYIPNTSAQLAGGHPKNIIMLCCDAFGVLPPVAKLNPEQAIYYFLLGYTAKIAGTEAGIQEPTAVFSPCFGSPFLPLSPKAYARMFK 412
                 *************************************************************************************************** PP

                 HHHHHH--EEEEEE-SEESSSTTTSEE--HHHHHHHHHHHHTTCCCTS-EEE-TTT--EEES-BTTC-GG CS
   PEPCK_ATP 396 eklekhnakvyLvNtGwtggaygvgkrislkatraiikaildgeleavefekdpvfglevptevpgvpse 465
                 ek+ekh+++++L+NtGwtgg+yg+gkri+l+++r++++ail+gel++++f ++++f +++p+++p+vp+e
  CCG91746.1 413 EKIEKHKPNIWLLNTGWTGGPYGIGKRIALETSRRLVRAILSGELAKADFVQEEYFHFSIPQSCPDVPTE 482
                 *********************************************999*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3366.90
//
Query:       CCG91747.1  [L=294]
Description: F0F1-type ATP synthase, gamma subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-36  126.8   0.0    1.6e-36  126.5   0.0    1.0  1  ATP-synt       ATP synthase
     0.0023   18.0   0.3       0.41   10.7   0.5    2.5  2  APC_N_CC       Coiled-coil N-terminus of APC, dimerisation do
     0.0094   15.7   1.9      0.017   14.9   0.3    2.2  3  EMC3_TMCO1     Integral membrane protein EMC3/TMCO1-like
  ------ inclusion threshold ------
      0.034   12.6   1.0      0.048   12.1   1.0    1.1  1  Hemagglutinin  Haemagglutinin
      0.044   13.8   3.1       0.23   11.4   2.8    2.1  2  Blo-t-5        Mite allergen Blo t 5
        1.8    8.8   4.2         41    4.5   0.1    3.1  3  DASH_Dad1      DASH complex subunit Dad1
          4    7.2   7.9        1.2    8.9   4.4    1.8  2  DUF724         Protein of unknown function (DUF724)


Domain annotation for each model (and alignments):
>> ATP-synt  ATP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   0.0   6.1e-40   1.6e-36      14     279 .]      16     284 ..      11     284 .. 0.79

  Alignments for each domain:
  == domain 1  score: 126.5 bits;  conditional E-value: 6.1e-40
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHCEHHHHTTT..SSG.S...SSEEEEEEE--SSSSSTTHHHHHHHHHHHHHHHHHTTTETE CS
    ATP-synt  14 stkkItkAmkmVaaaklrkaqealeaarpyaekleevlealakreeeekhpllke..eekkvllivitSDrGLcGgfNsnvikkaeklieelkkegevk 110
                 ++  I+kAmk +a +  rk  + +e++++  ++l+++ +++  +     ++ll++  + ++ l+i+i+S+rG+cG fNs+++ + e+++++   +++  
  CCG91747.1  16 EIGEIMKAMKNMALVEQRKIAKYFESQKQAVDALQNIADDFFPSF----PELLNRplKIDRPLYILIGSERGFCGDFNSSLTSYWENMERSSMLPDQYG 110
                 5889*************************************6644....4556664446689***********************8777553333367* PP

                 EEEESHHHHHHHHHSS.EHHTTCE-TSS--HHHHHHHHHHHHSHH.....HTTSBSEEEEEEEEECCTSEEEEEEEEESST...HC......S..SSTS CS
    ATP-synt 111 lvvvGkkgreyfkrkvevqleftgvskkptfeeaseiaeeildly.....eegeideveivynkfksaisqeptvekllplekeee......kkeksey 198
                 l++vG+k+++       + + +++vs     e++s ++ e l+l+     +e+   +v+++++   +   +e+t + llp+  +ee      kk +++ 
  CCG91747.1 111 LILVGSKLESRA---SGLHKIIKAVSGPSVAEDVSPFIFEFLELVrksliQEEPPTSVTVFFHLPDN---YEITRKILLPIPVSEEkikaarKKVPPTP 203
                 **********33...233222344554555777777666665555222223444589*****99985...**********7555555655542222222 PP

                 EESS.HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT- CS
    ATP-synt 199 efepdeeevleellpeylasliyrallesaasEqaaRmtaMdnAtknakelidkltleyNraRQaaITqELieIvsGaeAL 279
                  +  d+ e++++l++++l + ++ a++ s+++E   Rm +M++A +  ++ +++l+ + Nr+RQ++IT+E+  I  G+eAL
  CCG91747.1 204 LLYIDPREFFMDLVDNFLLVGLFFAFYSSLLAESKIRMEHMQSALDQLDKKVEELNKKANRLRQEEITEEIEVILLGSEAL 284
                 3333568************************************************************************98 PP

>> APC_N_CC  Coiled-coil N-terminus of APC, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.017        43      32      48 ..     116     132 ..     115     135 .. 0.89
   2 !   10.7   0.5   0.00016      0.41       2      23 ..     247     268 ..     246     271 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.017
    APC_N_CC  32 skLEtetsgmKevlkql 48 
                 skLE+ +sg+  ++k +
  CCG91747.1 116 SKLESRASGLHKIIKAV 132
                 8***********99976 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00016
    APC_N_CC   2 sYdQLvrQvEaLkkenthlrrE 23 
                 + dQL + vE L k +  lr+E
  CCG91747.1 247 ALDQLDKKVEELNKKANRLRQE 268
                 67*******************9 PP

>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3       2.6   6.7e+03      55      77 ..      21      43 ..      18      50 .. 0.54
   2 ?   -1.4   0.0      0.64   1.6e+03      21      52 ..      76     107 ..      74     110 .. 0.84
   3 !   14.9   0.3   6.6e-06     0.017      21      76 ..     221     273 ..     209     292 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.6
  EMC3_TMCO1 55 qkrarelqkngdklklkklekrq 77
                +k+++++    +++  k +e+++
  CCG91747.1 21 MKAMKNMALVEQRKIAKYFESQK 43
                45555555555555555555555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.64
  EMC3_TMCO1  21 llvgiltgllsellqkllidkkkmekeqkrek 52 
                 +l+g  +g+   + ++l+ ++++me+  ++  
  CCG91747.1  76 ILIGSERGFCGDFNSSLTSYWENMERSSMLPD 107
                 68888999999999********9999877655 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 6.6e-06
  EMC3_TMCO1  21 llvgiltgllsellqkllidkkkmekeqkrekelqkrarelqkngdklklkklekr 76 
                 llvg++ +++s+ll +    k +me++q    +l k+++el+k+ ++l+++++ ++
  CCG91747.1 221 LLVGLFFAFYSSLLAES---KIRMEHMQSALDQLDKKVEELNKKANRLRQEEITEE 273
                 899*************8...66788**************************99876 PP

>> Hemagglutinin  Haemagglutinin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.0   1.9e-05     0.048     386     430 ..     236     280 ..     230     293 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.9e-05
                    HTTTEEEBXSSXXTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Hemagglutinin 386 kenkqleavgkelnelekrieeldkkvddgfldvityniellvll 430
                      ++++e +  +l++l+k++eel+kk + ++ + it +ie+++l 
     CCG91747.1 236 ESKIRMEHMQSALDQLDKKVEELNKKANRLRQEEITEEIEVILLG 280
                    56788999********************************87664 PP

>> Blo-t-5  Mite allergen Blo t 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.43   1.1e+03      52      74 ..     176     198 ..     171     200 .. 0.86
   2 ?   11.4   2.8     9e-05      0.23      19      65 ..     232     278 ..     226     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.43
                 SHHHHHHHHHHHHHHHHHHHHHH CS
     Blo-t-5  52 elkeqilreltialnfiegakgf 74 
                 e+  +il  + ++++ i++a++ 
  CCG91747.1 176 EITRKILLPIPVSEEKIKAARKK 198
                 67889*************99985 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 9e-05
                 XXX-HHHHHHHHHHHHHHHHHHHHHHHHHH--SSHHHHHHHHHHHHH CS
     Blo-t-5  19 llieeleekleklekallklseqvkelektkskelkeqilreltial 65 
                  l++e + ++e++  al +l ++v+el+k  ++  +e+i  e+++ l
  CCG91747.1 232 SLLAESKIRMEHMQSALDQLDKKVEELNKKANRLRQEEITEEIEVIL 278
                 577888899**********************************9976 PP

>> DASH_Dad1  DASH complex subunit Dad1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.3   3.4e+03       1      14 [.      38      53 ..      38      68 .. 0.71
   2 ?    4.5   0.1     0.016        41       9      35 ..     233     259 ..     226     263 .. 0.86
   3 ?    4.2   0.3     0.019        48      11      33 ..     268     290 ..     260     293 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.3
   DASH_Dad1  1 yFerqRdrl..iqeIa 14
                yFe q++++  +q+Ia
  CCG91747.1 38 YFESQKQAVdaLQNIA 53
                7899888743356665 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.016
   DASH_Dad1   9 liqeIaesmeevlnnlnaLNRsLEevi 35 
                 l++e    me++ + l++L+++ Ee++
  CCG91747.1 233 LLAESKIRMEHMQSALDQLDKKVEELN 259
                 67777788****************987 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.019
   DASH_Dad1  11 qeIaesmeevlnnlnaLNRsLEe 33 
                 +eI+e++e +l  ++aL +++E+
  CCG91747.1 268 EEITEEIEVILLGSEALRKKIEK 290
                 79******************997 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.78     2e+03     147     180 ..      22      55 ..       6      57 .. 0.59
   2 ?    8.9   4.4   0.00048       1.2     119     167 ..     235     283 ..     230     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.78
      DUF724 147 allkekkeaadkeiarlkseaekleeeledveqe 180
                 +++k++   ++++ia+   +++++ ++l+++ ++
  CCG91747.1  22 KAMKNMALVEQRKIAKYFESQKQAVDALQNIADD 55 
                 4445555555666666666666666666666555 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00048
      DUF724 119 eeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlksea 167
                 +e + +++++++ +d+l+kk+ el++++ +l++++ +++ e+  l sea
  CCG91747.1 235 AESKIRMEHMQSALDQLDKKVEELNKKANRLRQEEITEEIEVILLGSEA 283
                 68889999************************99999999988887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1596  (0.0890178); expected 358.6 (0.02)
Passed bias filter:                      977  (0.0544927); expected 358.6 (0.02)
Passed Vit filter:                       130  (0.00725082); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 2086.21
//
Query:       CCG91748.1  [L=504]
Description: membrane-bound ATP synthase, F1 sector,alpha-subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-62  209.7   0.0    5.2e-62  209.3   0.0    1.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    1.7e-24   86.6   0.1    2.9e-24   85.8   0.1    1.4  1  ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal doma
  ------ inclusion threshold ------
      0.019   15.5   0.1      0.038   14.5   0.1    1.5  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
      0.088   12.5   0.0       0.15   11.8   0.0    1.4  1  AAA_24         AAA domain


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.3   0.0   1.2e-65   5.2e-62       1     213 []     152     367 ..     152     367 .. 0.97

  Alignments for each domain:
  == domain 1  score: 209.3 bits;  conditional E-value: 1.2e-65
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHH.HHHHHHSSTSSEEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvis.qslskqsnsddaiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitlA 97 
                  G +++Da++pi++Gqr+l++g++g+Gkt+ + +++++q++++ +++y++iG+++++v +v+++++e +++++t++v++++ + + ++++++++++t+A
   CCG91748.1 152 GNKIVDAMIPIGKGQRELLIGDNGLGKTTFAlDTIANQKDKNVLCVYCLIGQKRSTVVHVIDTLKECSALDYTTVVVAEATSLPGLQYIAPFAACTIA 249
                  7799**************************99******75555******************************************************* PP

                  HHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEE..TSSEEEEEEEEEEE-GGCSTTSHHHHHHHHHSSEEEEB CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  98 EyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagka..pdrtGsvtivaavspaggDfsdpvttatlgitdgfivL 193
                  E ++++g++ l+i+d+ls +a+ +re+sl+l+++p++++yp+++++ +++l+ER++++   +  Gs+t++++v++++g++ ++++t++++itdg+i++
   CCG91748.1 250 EEWMEKGRDTLVIYDDLSLHAQTYRELSLLLRRPPGREAYPGDVFYLHSRLLERSTHLspLKGGGSMTALPIVETQQGELAAYIPTNLISITDGQIYF 347
                  **********************************************************864558********************************** PP

                  -HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 194 dkklaqrkhfPainvlvSvS 213
                  ++ l++++  Pai+v  SvS
   CCG91748.1 348 EQFLFSSGFLPAIDVTRSVS 367
                  ******************99 PP

>> ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.1   6.6e-28   2.9e-24       1      98 [.     374     471 ..     374     499 .. 0.89

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 6.6e-28
  ATP-synt_ab_C   1 QtkamkkvagsLklelaqYrEleaFaqFgsdLDeatkkqLerGerlvelLkQkqysplsveeqviilyaatngllddipvekvkefekelleylee 96 
                    Q   ++k ag++kl++ q+ Ele F++Fg++L+++ +k++++G+ l+elLkQ++ sp+s e++ + l+a+++gl+dd+p e+++ f++ell+++++
     CCG91748.1 374 QHPHLRKEAGRMKLDYLQFLELEVFTRFGTKLEASLEKKIKKGRILRELLKQERLSPISPEQEYCWLIAFNEGLFDDVPFESLRVFQEELLKKFKA 469
                    78889****************************************************************************************998 PP

  ATP-synt_ab_C  97 ek 98 
                    + 
     CCG91748.1 470 TS 471
                    73 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   8.5e-06     0.038       2      69 .]      28      95 ..      27      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.5e-06
                   EEEETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N  2 vqviGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69
                   v++ G vv +++g + + g+  a   +l e +++ ++ +  l+e  V+++ +  t+ ++ Gt V  TG
     CCG91748.1 28 VEEFGRVVAIGDGTAWIDGLSLAAIDDLLECEDGSVALVYSLSEKLVGAMMLIQTEKIMSGTLVHKTG 95
                   678899999999999888888888888888889********************************998 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.4e-05      0.15       3      42 ..     166     210 ..     164     262 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.4e-05
      AAA_24   3 lkiliyGpsgiGKTtlakel.....gpkplfidtekGlksldadk 42 
                 ++ l++G++g GKTt+a+        +++l++ +  G k+  + +
  CCG91748.1 166 QRELLIGDNGLGKTTFALDTianqkDKNVLCVYCLIGQKRSTVVH 210
                 66799************9998888888888877766666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 3986.95
//
Query:       CCG91749.1  [L=248]
Description: F0F1-type ATP synthase, subunit b and delta subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-08   33.0  16.7    5.3e-08   33.0  16.7    2.8  2  ATP-synt_B  ATP synthase B/B' CF(0)
    2.2e-07   31.1   9.4    3.8e-07   30.4   7.7    2.0  2  OSCP        ATP synthase delta (OSCP) subunit
  ------ inclusion threshold ------
       0.35   10.8   6.8      0.059   13.3   3.0    1.6  2  HrcA        HrcA protein C terminal domain
       0.76    9.9  10.6        1.4    9.0  10.6    1.4  1  DUF4337     Domain of unknown function (DUF4337)


Domain annotation for each model (and alignments):
>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0  16.7   1.2e-11   5.3e-08       1      97 [.       7     103 ..       7     118 .. 0.84
   2 ?    0.3   0.8      0.16     7e+02      44      81 ..     111     148 ..     108     177 .. 0.63

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.2e-11
  ATP-synt_B   1 tlvvnliallilvgllikfawkplkkvLdkReekIadeiaeAeerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlk 97 
                 t++++ + +l++v ll++f+ kp+++++++R+e +a+  +eA+++++ a++l+a++e++lk  + e ++  ++ ++e + ++++++ae ++++e  k
  CCG91749.1   7 TFILQIFDFLVFVWLLKRFLFKPVLNFIKQRKEVVASMWNEAQKAKEAAEKLKADYENRLKLWEEEKKKAKEELQEELRIQRAKLIAENQKALELEK 103
                 7999********************************************************9888887777777777777777777777666665333 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.16
  ATP-synt_B  44 errkeaaallaeaeqqlkeAraeAaeiiknAkkeaekl 81 
                 e+rk   +++ae+++ +  A+  A+ + k A ++ ek 
  CCG91749.1 111 EKRKLDMQIEAEKRALQIGAQFVAHFLSKLASEAVEKK 148
                 44444455666666666789999999999998887764 PP

>> OSCP  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.3      0.32   1.4e+03     100     129 ..      55      84 ..      30     101 .. 0.52
   2 !   30.4   7.7   8.5e-11   3.8e-07      34     166 ..     110     240 ..      53     244 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.32
        OSCP 100 rgiveaeVtsavpLtdeqlekleaalakkl 129
                  ++++a+     +L +e+++k +++l++ l
  CCG91749.1  55 AEKLKADYENRLKLWEEEKKKAKEELQEEL 84 
                 333445555555555555555555554444 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 8.5e-11
        OSCP  34 aedkklaellsnpavsaeekkdlleelfkeklseav.knflkllaenkRlalLpeiaeefeellaeargiveaeVtsavpLtdeqlekleaalakklgk 131
                 +e++kl   ++  +   +  +++++ ++++ +seav k++++l +  +Rl  Lpe   e  +   ++++i  + + s++p+++ ++ kl++ l++  +k
  CCG91749.1 110 EEKRKLDMQIEAEKRALQIGAQFVAHFLSKLASEAVeKKLIELCL--DRLRSLPEQTLELIRQTIQREEIHSVCIKSVYPVEEVTKRKLRELLEQIAKK 206
                 344444444444443334444444444444444444145555555..4888************************************************ PP

        OSCP 132 kkvkleekvdpsliGGvvvkvgdkviDgSvkgkLe 166
                  ++++e + d+++++G+++ +g+++  +S++  Le
  CCG91749.1 207 -ELSFEFVQDQKIMAGIRIIIGSWIARASIEDELE 240
                 .7*************************99998886 PP

>> HrcA  HrcA protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.5      0.41   1.9e+03      72     100 ..      74     102 ..      38     122 .. 0.58
   2 ?   13.3   3.0   1.3e-05     0.059      58     179 ..     113     228 ..      99     237 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.41
        HrcA  72 aklsnllneklagltlseiaerlreeklk 100
                 +k+++ l+e+l+ ++ + iae+ + ++l+
  CCG91749.1  74 KKAKEELQEELRIQRAKLIAENQKALELE 102
                 33344444444444433333333333333 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.3e-05
        HrcA  58 rllelpeevseeelaklsnllneklagltlseiaerlreeklkeelseyeelleqllealeealerseelyvsGtsnllrqpefsddeklrellellee 156
                 r l+++ e +++ l+  ++++ + l++l  + ++++l e+ l+    ++ +l eq le ++++++  ee++   ++++   +e+   +klrelle + +
  CCG91749.1 113 RKLDMQIEAEKRALQIGAQFVAHFLSKLASEAVEKKLIELCLD----RLRSLPEQTLELIRQTIQ-REEIHSVCIKSVYPVEEV-TKRKLRELLEQIAK 205
                 3445566677888***************************744....444688889998888886.578**************9.689*********** PP

        HrcA 157 kvvllkllselsdaegvsvrIGs 179
                 k+   + +++ +  +g++++IGs
  CCG91749.1 206 KELSFEFVQDQKIMAGIRIIIGS 228
                 *9999*9976664456******8 PP

>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  10.6   0.00032       1.4      67     119 ..      46     117 ..      31     134 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00032
     DUF4337  67 k.aeelaaavdkkiakykkkiarykkekkeikk..................kAkeleaerdeaneasdkfdl 119
                 + a+++++a++k +a+y+++ + +++ekk+ k+                  kA ele+er++  e++ k d+
  CCG91749.1  46 NeAQKAKEAAEKLKADYENRLKLWEEEKKKAKEelqeelriqrakliaenqKALELEKERNRVLEEKRKLDM 117
                 23677777777888888888888888877777777778889999*********************9999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2927  (0.163255); expected 358.6 (0.02)
Passed bias filter:                      781  (0.0435607); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 1783.35
//
Query:       CCG91750.1  [L=88]
Description: ATP synthase subunit c 1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-15   55.2   8.8      9e-15   54.8   8.8    1.2  1  ATP-synt_C  ATP synthase subunit C
  ------ inclusion threshold ------
      0.093   12.2   2.7        0.1   12.1   2.5    1.3  1  DUF2938     Protein of unknown function (DUF2938)


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   8.8     1e-18     9e-15       3      59 ..      15      75 ..      13      76 .. 0.94

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 1e-18
                HHHHH.GGGHHHHHHHHHHHHHHHHHHHHSG....HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C  3 aglavGlsalgsGigiGkagsagiravarnp....klftksliilafaeaialygLivali 59
                a la+Gl+++g G+g+G+a +++++a+ar+p    +++  +li+la++e++a+y L+v li
  CCG91750.1 15 AVLAIGLGVVGPGLGMGIAIAKALEAIARQPelekSITRWLLIGLAMIESLAIYVLVVVLI 75
                89*****************************998777777*******************99 PP

>> DUF2938  Protein of unknown function (DUF2938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.5   1.1e-05       0.1      91     128 ..       6      43 ..       1      74 [. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.1e-05
     DUF2938  91 llpalvvgivtvvapflllqPalGaGlaasrtpkpaka 128
                 l ++lv +++  ++++ ++ P+lG+G+a +++ ++ + 
  CCG91750.1   6 LFSTLVTAMAVLAIGLGVVGPGLGMGIAIAKALEAIAR 43 
                 678899999*******************9998776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       875  (0.0488036); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 668.43
//
Query:       CCG91751.1  [L=218]
Description: ATP synthase subunit a 1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-44  152.8  18.8    1.5e-44  152.5  18.8    1.0  1  ATP-synt_A       ATP synthase A chain


Domain annotation for each model (and alignments):
>> ATP-synt_A  ATP synthase A chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5  18.8   8.4e-49   1.5e-44       4     210 ..      21     207 ..      17     208 .. 0.87

  Alignments for each domain:
  == domain 1  score: 152.5 bits;  conditional E-value: 8.4e-49
                 HHHHHHHHHCCC.CCSS.T.TTTSHHHHHHHHHHHHHHHHHHHHCTSSSTXHHHHHHHHHHHHHHHHHCCHCCSSTTTTTTCHHHHHHHHHHHHHHHHH CS
  ATP-synt_A   4 tlivllilllllllatrkkkkklpgklqnlvealvefvdnlvksvigkkkkkkffpliltlflfilvsNllgliPglraatadinvtlalAlivfllvl 102
                 +++++++++l++  ++r k  + pg +q+++e l++f++++v+++i k + + ++pli tl ++i+++Nl+gliPg+ ++tad++vt alA+ivf+ v 
  CCG91751.1  21 SIMTVVVVILFV-SIRRFK-LESPGYFQVVIEELISFIEKTVTDTIPK-NPQEVLPLIGTLWIYIFLCNLIGLIPGMHSPTADLSVTSALACIVFFSVP 116
                 444555555555.455544.345***********************64.669*********************************************** PP

                 HHHHHHHGG..GGCHHHSSSCCCCHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTGCCCTTCHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_A 103 ilgikkkglkgyfkklfvpplllvplllpielisefarpvsLalRLfgNifAGelllallagllllllllavllsvlilllavlllllelfvgfiQAfv 201
                 ++gi+++gl++y+k +fv   + ++ ++p+++ise++r+++La+RL+gN+ + e+ + +l++l    +   +      +l +v+++ll+l+ +++QA++
  CCG91751.1 117 YYGIRAEGLWAYLKAYFV---P-FFWFFPFHIISEITRTITLAVRLYGNMSSMEIGIGILLLL----A---G------FLSPVAFMLLHLIEAILQAYI 198
                 ****************96...2.34568******************************99833....1...1......456789*************** PP

                 HHHHHHHHH CS
  ATP-synt_A 202 FtlLtlvYi 210
                 F +L+l+Yi
  CCG91751.1 199 FGILALIYI 207
                 ********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1471.22
//
Query:       CCG91752.1  [L=92]
Description: F0F1-type ATP synthase subunit, ATPase_gene1 family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-12   46.0   7.8    4.9e-12   45.8   7.8    1.1  1  ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transpor
     0.0014   18.3   1.4     0.0018   17.9   1.4    1.1  1  TauE          Sulfite exporter TauE/SafE
  ------ inclusion threshold ------
      0.031   13.0   0.2      0.034   12.9   0.2    1.0  1  DUF2207       Predicted membrane protein (DUF2207)
        0.1   12.4   0.1       0.13   12.2   0.1    1.0  1  CHD5          CHD5-like protein
        0.2   11.7   6.9        0.5   10.4   1.6    2.2  2  DUF2273       Small integral membrane protein (DUF2273)


Domain annotation for each model (and alignments):
>> ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   7.8   1.4e-15   4.9e-12       3      53 ..      35      86 ..      33      87 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 1.4e-15
  ATPase_gene1  3 lasqiGielvapillggllGywLDkkfgt.spwfliiglllGlaaGfynvyr 53
                   ++++G+ +++p+++g++lG wLD+k++  +  ++i +++lG+++G +nvy 
    CCG91752.1 35 FLGTLGVLFIIPVIIGAYLGKWLDEKLPGyAIHWTISFIILGVILGSLNVYV 86
                  6899***********************888*********************6 PP

>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.4     5e-07    0.0018     190     233 ..      35      78 ..      26      85 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5e-07
        TauE 190 vdwpllllllpgallGallGarlarrlsertlrrlfallllvlg 233
                 +  +l++l+++++++Ga+lG++l  +l+  ++ + + +++l + 
  CCG91752.1  35 FLGTLGVLFIIPVIIGAYLGKWLDEKLPGYAIHWTISFIILGVI 78 
                 44566677899999999999999999998888887777776554 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   9.6e-06     0.034     354     426 ..       6      82 ..       2      92 .] 0.51

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.6e-06
     DUF2207 354 kkalkkwksavkk.kergyfdkkgkkklkklsalglgliilglilillallllvll..............lvfllilllillliaiiv 426
                 kk ++k++++v+k ++ + f+ +  ++++ l++lg+++ii ++i++       +l+                   i ++il++i+  +
  CCG91752.1   6 KKLVEKIQQDVEKkEKAQKFKPTLLSQTAFLGTLGVLFIIPVIIGA-------YLGkwldeklpgyaihwT----ISFIILGVILGSL 82 
                 5677888888888555555555544444444444444444444444.......333556777788855433....4444444433332 PP

>> CHD5  CHD5-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.5e-05      0.13      75     143 ..       6      74 ..       2      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.5e-05
        CHD5  75 dkleeeleklkkelsaskssfkkklkkvllvlttvpqlvlkfwyrktpvfylpkgwfPllvewllslpl 143
                 +kl e++++  ++ +++++   ++l+   ++ t ++ +++ +  +     +l +++ ++++ w +s+ +
  CCG91752.1   6 KKLVEKIQQDVEKKEKAQKFKPTLLSQTAFLGTLGVLFIIPVIIGAYLGKWLDEKLPGYAIHWTISFII 74 
                 6889999999888888888888999999**************************************754 PP

>> DUF2273  Small integral membrane protein (DUF2273)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.6   0.00014       0.5      31      48 .]      41      58 ..      33      58 .. 0.89
   2 ?    4.2   0.3     0.012        42       7      21 ..      68      82 ..      67      86 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
     DUF2273 31 LliillvliGyyiGkylD 48
                +l+i+ v+iG+y+Gk+lD
  CCG91752.1 41 VLFIIPVIIGAYLGKWLD 58
                589999**********98 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.012
     DUF2273  7 gkiiGaliGlilail 21
                + i ++++G+il+ l
  CCG91752.1 68 WTISFIILGVILGSL 82
                678888888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1588  (0.0885716); expected 358.6 (0.02)
Passed bias filter:                      999  (0.0557198); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 650.58
//
Query:       CCG91753.1  [L=135]
Description: F0F1-type ATP synthase, epsilon subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-07   29.1   0.0    8.9e-07   28.7   0.0    1.2  1  ATP-synt_DE_N    ATP synthase, Delta/Epsilon chain, beta-sand
  ------ inclusion threshold ------
      0.021   14.8   0.7      0.031   14.2   0.7    1.2  1  DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau do
      0.056   13.8   0.2      0.095   13.0   0.2    1.4  1  DUF4160          Domain of unknown function (DUF4160)
       0.19   11.7   4.8       0.23   11.4   0.9    2.2  2  UPF0542          Uncharacterised protein family UPF0542


Domain annotation for each model (and alignments):
>> ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0     2e-10   8.9e-07      21      77 ..      24      81 ..       5      84 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2e-10
                   EEEESSSEEEE-TT--SEEEEEESEEEEEEEGGG.EEEEEEESSEEEEEETTEEEEEE CS
  ATP-synt_DE_N 21 vaptteGelgilpgHaplitaLkpgelriktedg.eeesiavsgGflevqdnkvtila 77
                      + +G++gi+++H+ ++t+L  g   + t d+   +++a+sgG+l ++ n ++i++
     CCG91753.1 24 HGSDRSGQFGIMARHQTFMTSLLLGLCWFFTIDDpLPTYVALSGGILHFSRNILSIVT 81
                   566789*********************9999775267999**************9987 PP

>> DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.7   6.9e-06     0.031      68     102 ..      95     129 ..      85     134 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.9e-06
  DNA_pol3_gamma3  68 peaaedlslpeeererlkelaeklsleqLqrlWql 102
                       + +++l+++e++r+ ++e a++l+ e L+r+W++
       CCG91753.1  95 IDLEQELKMEEQQRKEMRERAKNLEKEMLKRMWEM 129
                      47789999**************************9 PP

>> DUF4160  Domain of unknown function (DUF4160)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   2.1e-05     0.095      15      65 ..      81     127 ..      71     128 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.1e-05
     DUF4160  15 ppHvHvkyggdeakiwl.edvellegsglpkkelklieewveehqeellekW 65 
                  pH+ v +++++++i+l +++++ e+    +ke+++  + +e  +e l+++W
  CCG91753.1  81 TPHFFVDKDMQKISIDLeQELKMEEQ---QRKEMRERAKNLE--KEMLKRMW 127
                 59****99999******776777777...5677666555443..45666666 PP

>> UPF0542  Uncharacterised protein family UPF0542
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.8     0.057   2.6e+02      22      37 ..      40      55 ..      37      59 .. 0.89
   2 ?   11.4   0.9   5.2e-05      0.23      22      68 ..      71     120 ..      51     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.057
     UPF0542 22 eFlttvlliltPllll 37
                 F+t++ll+l  ++ +
  CCG91753.1 40 TFMTSLLLGLCWFFTI 55
                69********999965 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.2e-05
     UPF0542  22 eFlttvlliltPllll...saflsyKLakelkkqekekklkakrkaniak 68 
                  F   +l i+tP +++      +s  L +elk +e+++k  + r +n+ k
  CCG91753.1  71 HFSRNILSIVTPHFFVdkdMQKISIDLEQELKMEEQQRKEMRERAKNLEK 120
                 57788999999999993333578*************99999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1829  (0.102013); expected 358.6 (0.02)
Passed bias filter:                      761  (0.0424452); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 992.69
//
Query:       CCG91754.1  [L=487]
Description: membrane-bound ATP synthase, F1 sector,beta-subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-60  202.3   0.0    9.3e-60  201.9   0.0    1.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    4.6e-10   39.9   0.0      1e-09   38.7   0.0    1.7  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
     0.0023   17.8   0.4     0.0073   16.2   0.4    1.9  1  T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
  ------ inclusion threshold ------
       0.31   10.2   1.7       0.51    9.5   0.3    1.9  2  NB-ARC         NB-ARC domain


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.9   0.0   2.1e-63   9.3e-60       1     213 []     159     372 ..     159     372 .. 0.97

  Alignments for each domain:
  == domain 1  score: 201.9 bits;  conditional E-value: 2.1e-63
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS.S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsd.d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitl 96 
                  Gi+v+D+l+p+v+G++t+++g++gvGktv++ + +k  +   + +++++g+Ger +e +e+++e++++++m +t + + +++e++  r++  +t+++ 
   CCG91754.1 159 GIKVIDLLCPFVKGGKTGLFGGAGVGKTVLMMEFMKAVSLIhHgVSVFAGVGERIREGHELWKEMQKAGVMPQTLMAFGQMDESPGVRFRIGLTALSY 256
                  99*****************************8888886543446****************************************************** PP

                  HHHHHH.TTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHHHHHHSSEEEEB CS
                  xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  97 AEyfrd.qgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvttatlgitdgfivL 193
                  AEyfrd  + ++l+++d+l+r+++A  e+s++lg+mpa  gy+++l +++a+l++R+ ++  ++G +t+v+av+++++D++dp   a+l+++d+ ++L
   CCG91754.1 257 AEYFRDtLQTEILFLMDNLFRFVQAGSEVSGLLGRMPAMVGYQPTLLSEVAELQDRIVST--KSGNITAVQAVYVPADDMTDPAVMAILSHLDTVVIL 352
                  ******8899**************************************************..89********************************** PP

                  -HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 194 dkklaqrkhfPainvlvSvS 213
                  +++ a+++ +Pai++lvS+S
   CCG91754.1 353 SRSQAAKGFYPAIDPLVSTS 372
                  ******************98 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   2.3e-13     1e-09       1      69 []      37     102 ..      37     102 .. 0.97

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 2.3e-13
                    EEEEETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N   1 ivqviGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69 
                    +v+v Gpvvd+e  i   p +  +l++ l + ++ + +v ++l+e+  r+i + st Gl+rG+ V++TG
     CCG91754.1  37 VVEVHGPVVDIECQIL--PPLHRCLKTYLDH-ESYVFEVHQHLDEHHLRAITLHSTAGLRRGMDVYDTG 102
                    799********99999..**********888.************************************9 PP

>> T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.4   1.6e-06    0.0073       3      28 ..     382     407 ..     380     441 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.6e-06
  T3SS_ATPase_C   3 pehlqaarklrellatyqenedLini 28 
                    + h+  a+++r++l++y+e ed+in+
     CCG91754.1 382 QRHYTIASEVRKYLSRYKELEDIINL 407
                    679*********************97 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00011      0.51      24      50 ..     176     202 ..     167     238 .. 0.84
   2 ?   -1.2   0.1       0.2   9.1e+02      69     101 ..     401     432 ..     376     434 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00011
                 EEEESTTSSHHHHHHHHCCSHCCCCCC CS
      NB-ARC  24 alvGmgGvGKttlakqilnksdevegr 50 
                 +l G +GvGKt+l+ + ++  + +++ 
  CCG91754.1 176 GLFGGAGVGKTVLMMEFMKAVSLIHHG 202
                 689**************9997777665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.2
                 HHXXHHHHHCCCTTSSSS-STTSHHHHHHHHCC CS
      NB-ARC  69 letilkeLslseddleekeeveslkrklvrlLl 101
                 le+i++ L+ +e   e k+ v  ++rk++r+L 
  CCG91754.1 401 LEDIINLLGMEELSKEDKQIVL-RARKIQRYLT 432
                 4567777777655555555555.8888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3402.35
//
Query:       CCG91755.1  [L=448]
Description: Nicotinate phosphoribosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-37  129.0   1.8    4.1e-37  127.4   1.8    1.9  1  NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N
    3.1e-11   43.7   0.1    3.3e-07   30.7   0.1    2.4  2  NAPRTase_C  Nicotinate phosphoribosyltransferase C-terminal d
    4.2e-09   36.4   0.0    6.2e-09   35.8   0.0    1.2  1  NAPRTase    Nicotinate phosphoribosyltransferase (NAPRTase) f
  ------ inclusion threshold ------
      0.027   14.2   0.0       0.04   13.7   0.0    1.3  1  QRPTase_C   Quinolinate phosphoribosyl transferase, C-termina
      0.042   13.5   0.0       0.11   12.2   0.0    1.6  2  HBB         Helical and beta-bridge domain


Domain annotation for each model (and alignments):
>> NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   1.8   1.1e-40   4.1e-37       1     124 [.       8     129 ..       8     130 .. 0.98

  Alignments for each domain:
  == domain 1  score: 127.4 bits;  conditional E-value: 1.1e-40
  NAPRTase_N   1 LdtDlYkltmaqavfkkgpdvevvfelffRkkpfkgeyaivagleevieylenlrfteeeieyLkrklpyfkedfleyLrtfrfkpsevaveeeevvfp 99 
                 L+tDlY+ltm+q ++ ++++  ++fe+f+Rk p+++++ ++agle+ ++++e+ +f++eeie+L+   + f+ dfl+yL++frf+++++a++e++++fp
  CCG91755.1   8 LLTDLYELTMMQGYYYHKMEGMASFEFFVRKLPKNRNFLVFAGLEQLLNFVESAHFEKEEIEWLA--QQNFRIDFLNYLENFRFSGDIYAMQEGTIFFP 104
                 89**************************************************************9..7889**************************** PP

  NAPRTase_N 100 gepeirveGpwieaillEtplLaiv 124
                  ep +rv++p+++a+llE  l++i+
  CCG91755.1 105 FEPVLRVTAPIAQAQLLESRLMNII 129
                 ************************8 PP

>> NAPRTase_C  Nicotinate phosphoribosyltransferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   9.4e-05      0.34       2      27 ..     351     376 ..     350     379 .. 0.90
   2 !   30.7   0.1   9.2e-11   3.3e-07      52     110 ..     377     436 ..     374     437 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.4e-05
  NAPRTase_C   2 KkvyRlydkdgkalaDlialadekep 27 
                 K+v+R ++k+g++  Dli la e+ p
  CCG91755.1 351 KQVFRYFNKNGSMQKDLIGLATESYP 376
                 9********************99655 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 9.2e-11
  NAPRTase_C  52 vekLlkkvfkdGklvyelpsleeireyvkeqlaelrpehkRll.nPtpYkVslseklydl 110
                 +  Ll++v+++Gk++y+++sl ei++++k++la+l+ e+k l+   t+Y+V+ s+ l  l
  CCG91755.1 377 AVTLLHPVMRNGKRIYPKESLIEIQKRTKDNLARLPFEIKTLEpAKTTYPVEFSQPLISL 436
                 568*************************************99626799*******99876 PP

>> NAPRTase  Nicotinate phosphoribosyltransferase (NAPRTase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.7e-12   6.2e-09       3     196 ..     151     330 ..     149     345 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.7e-12
                 EEE-TSTTSSSHHHHHHHHHHHHHHHTTTEEEESBHHHHHHHT--B--HHHHHHHHHHH..HHHCHHHHHCCHHH..HHHHHHHHHHCCHIIEEECHCC CS
    NAPRTase   3 lhDFGtRrrsslesqeivvkalkkahlvnflGtdnvlaaakysikaaetsahealgkeq..elsafrnnlkqfqk..daldlwvaiekgnlgiaLtdlv 97 
                 l +FG Rr++  e+   +++         f+Gt+nvla + ++i+ ++t+ah++++++   e s f + +++ q+    +d + ++   +l  +L   +
  CCG91755.1 151 LVEFGLRRAHGAEATIFSAR---ASFIAGFSGTSNVLAGKLFEIPILGTMAHSFIQAHDveEQSFFDYAIANPQNvtLLIDTYDTERAAKLVVKLAPKL 246
                 789********999988888...678999***************************9852255557777777777553345555555566777777777 PP

                 THHHHHCCS-CCHHHSEEEEE-SS-HHHHHHHHHHHHHCTCTTTCCCSEEEEESS-SHHHHHHHHHHHHHTTCEEEEEESHHHHSSECTTCTTTCCEEE CS
    NAPRTase  98 ltdaflkdfrleakaylgvRpDSGdpvevieklaahygstlnskgytkrlifsDgldvekiieilealkkkgfniaFGiGtnltqdlnrdtlefavkas 196
                  +++              vR DSGd + + +++ ++  +  + k ++  +  s +ld  k++++++          FGiGt+l    +   l +++k++
  CCG91755.1 247 KEKGIS---------IEAVRLDSGDLELLSKRVRSILDTG-GLKETK--IFASGNLDEYKLEALVKSGAP---INGFGIGTSLDTSSDAPYLDCVYKLQ 330
                 777777.........579*******776666666666665.555443..445889*******99998777...458******98887777777777776 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.1e-05      0.04       1     154 [.     135     308 ..     135     324 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHHCTSSEEEE-S---TT.THHHHHHHHHHTTSB.......--TSSTTTSEEE-HHHHHHHSSHHHHHHHHHHHHTTTSEEEEEESSHH CS
   QRPTase_C   1 iAtltarmveaaksakvrildTRkttPg.lrllekyAvliGGgd.......nhrlgLsdmvlikdnhiaaagsiveavksvreavdkevkievevesle 91 
                 iA+++ r++  a +++ + ++ R+ + +   ++  +A  i+G +        + +++  + ++ +  i+a    ++       a +++v + ++++  e
  CCG91755.1 135 IASKAIRFALVAPEKNLVEFGLRRAHGAeATIFSARASFIAGFSgtsnvlaGKLFEIPILGTMAHSFIQAHDVEEQSFFDYAIANPQNVTLLIDTYDTE 233
                 566666666666666666666666665413456666777777666666666666666667777777777777655555556666688888999999999 PP

                 HHHHHHH..........HT-SEEEEES--HHHHHHHHHHH.HHHSTT.SEEEEESS--TTTHHHHHCTT-SEEEE CS
   QRPTase_C  92 eleevle..........aeadiimLDnfsveelkkaveel.keknkr.vlievSGgvtlenveeyaksgvdvisv 154
                  + + +              + ++LD  + e l k v ++ +    +  +i++SG++ + ++e++ ksg  + + 
  CCG91755.1 234 RAAKLVVklapklkekgISIEAVRLDSGDLELLSKRVRSIlDTGGLKeTKIFASGNLDEYKLEALVKSGAPINGF 308
                 8888766688888765555999********999999999844443336******************999544443 PP

>> HBB  Helical and beta-bridge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     3e-05      0.11     115     155 ..     247     286 ..     235     294 .. 0.93
   2 ?   -3.9   0.0       2.6   9.4e+03     152     177 ..     373     398 ..     372     398 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3e-05
                 .STT.EECCCCS-TCCHHHHHHHCHCCCCCCTS-SSHHHHH CS
         HBB 115 keegesLeavcldPskalrflkerlssllmsgtltpleeys 155
                 ke+g s+eav ld s  l+ l++r +s+l +g l++ + ++
  CCG91755.1 247 KEKGISIEAVRLD-SGDLELLSKRVRSILDTGGLKETKIFA 286
                 6899*********.********************9988776 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.6
                 HHHHHHHT....EEE.S..S.GGHCC CS
         HBB 152 eeysdiiGleaklkkfpspfpkEnli 177
                 e y +++ l+++++   ++ pkE+li
  CCG91755.1 373 ESYPAVTLLHPVMRNGKRIYPKESLI 398
                 67888888889999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3285.31
//
Query:       CCG91756.1  [L=115]
Description: hypothetical protein MFUM_200071 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 836.80
//
Query:       CCG91757.1  [L=71]
Description: hypothetical protein MFUM_200072 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 530.69
//
Query:       CCG91758.1  [L=55]
Description: hypothetical protein MFUM_200073 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 425.48
//
Query:       CCG91759.1  [L=48]
Description: hypothetical protein MFUM_200074 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       125  (0.00697194); expected 358.6 (0.02)
Passed bias filter:                      119  (0.00663729); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 384.78
//
Query:       CCG91760.1  [L=230]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-64  217.6   0.3    1.4e-64  217.4   0.3    1.0  1  QueH      Epoxyqueuosine reductase QueH


Domain annotation for each model (and alignments):
>> QueH  Epoxyqueuosine reductase QueH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.4   0.3     8e-69   1.4e-64       1     174 [.      19     192 ..      19     193 .. 0.99

  Alignments for each domain:
  == domain 1  score: 217.4 bits;  conditional E-value: 8e-69
        QueH   1 lLlhaCCapcssyvleklkeegfevtvffynpnihpeeEyekRleelkrlieelkielieedydleefleavkglekekekgeRCekCyelrLektael 99 
                 +Llh+CCapcs+ +++++ ++g+++tvffynpnihp+ Eye R++e+ r++++ +ie++++dyd+++++e+vkgle e+e+g+RC++C+++r+e+ta +
  CCG91760.1  19 VLLHSCCAPCSAEIMDAIIASGIHLTVFFYNPNIHPHVEYEIRKNENIRFAKKRGIEFVDADYDKDRWFERVKGLEWEPERGKRCTVCFDIRMERTALY 117
                 79************************************************************************************************* PP

        QueH 100 AkengfdaftttltiSplknaelineigeelaeeygvkflasdfkkkegykrsielskelglYrQkYCGCvfskk 174
                 A e+gf++f+++l iS++k+ ++++++g+++a++yg++++  +++kk+g +r+i +ske ++Y+Q YCGC++s +
  CCG91760.1 118 AYEHGFKVFSSSLGISRWKDFDQVTSAGKRAASRYGLEYWSYNWRKKGGSERMILISKEENFYQQLYCGCIYSLR 192
                 *************************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1861.03
//
Query:       CCG91761.1  [L=260]
Description: Sec-independent protein secretion pathway component TatC [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-57  195.1  14.2    1.4e-57  194.9  14.2    1.0  1  TatC      Sec-independent protein translocase protein (TatC)
  ------ inclusion threshold ------
       0.16   12.1   0.4       0.38   10.9   0.4    1.6  1  Sid-5     Sid-5 family


Domain annotation for each model (and alignments):
>> TatC  Sec-independent protein translocase protein (TatC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.9  14.2   1.5e-61   1.4e-57       1     207 []      11     224 ..      11     224 .. 0.98

  Alignments for each domain:
  == domain 1  score: 194.9 bits;  conditional E-value: 1.5e-61
                 -HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCCHHHHC..CT.TS-EE--SSS-HHHHHHHHHHHHHHHHSHHHHHHHHHCCCTTTTS---STTTH CS
        TatC   1 ehLeeLrkrlirallavaiafiitfvfaeeliafllepleea.ee.evelivlspleafllklkvslvaglvlasPvilyqlwafvapgLykherrlvl 97 
                 ehLe Lr+ +i++l+a++ ++i++fv +++l+a+ll+pl++a e  ++ l vl +++++ ++l++sl++glvl++P+ily + +f+ pgL+++e +l++
  CCG91761.1  11 EHLEDLRWVIIKSLMALVGGAIVCFVETKPLMAILLRPLKAAgEDpQKVLRVLGVVDPLSVQLQISLLGGLVLSLPFILYFIAEFIIPGLTPSELKLLF 109
                 8*************************99*************9886567788************************************************ PP

                 HHHHHHHHHHHHHHHHHHHTHHHHHHHHHT....TTTSSTTEEHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTTSS-HHHHHTTHHHHHHHHHHHHHH CS
        TatC  98 vfliaslllfllGaafayfvvlplvlkfll....seevepllslseylsfvlllllafgiaFelPlvlvllarlglvsaetlrkkrryaivvilvvaav 192
                 +++ a  llf++G++f+yf++lp +l+f+     ++++++ ++l++y +fv+++l+ fg+aFelPl++vll+ lg+++ +tl ++rr+aivvi+++aa 
  CCG91761.1 110 PIFSAGALLFVGGILFSYFILLPQTLRFFStynqWMGIQTDWTLQNYANFVVQMLVSFGLAFELPLIIVLLGLLGILNTSTLIHYRRHAIVVIVIAAAC 208
                 ******************************99988889999********************************************************** PP

                 H-S..SHHHHHHHHHH CS
        TatC 193 ltP.pdvisqlllavP 207
                 +tP +d++s l+l vP
  CCG91761.1 209 ITPsSDPLSLLFLSVP 224
                 *************999 PP

>> Sid-5  Sid-5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   4.3e-05      0.38      19      63 ..     176     220 ..     171     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.3e-05
       Sid-5  19 lLaisilllllNilqvvffnRakllklyRrrfqqlPesetassvf 63 
                 ++++++ll +lN  +++++ R++++ ++ + +   P+s+  s +f
  CCG91761.1 176 IIVLLGLLGILNTSTLIHYRRHAIVVIVIAAACITPSSDPLSLLF 220
                 578899999*******************99999999999776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1947.09
//
Query:       CCG91762.1  [L=98]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 739.79
//
Query:       CCG91763.1  [L=161]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0032   17.4   0.1     0.0056   16.6   0.1    1.3  1  HNH_4            HNH endonuclease
     0.0047   16.8   0.1      0.009   15.9   0.1    1.4  1  HNH_5            HNH endonuclease
  ------ inclusion threshold ------
       0.11   12.7   0.5       0.21   11.8   0.5    1.4  1  HNH              HNH endonuclease
       0.12   12.5   0.0       0.16   12.1   0.0    1.2  1  Endonuclea_NS_2  DNA/RNA non-specific endonuclease


Domain annotation for each model (and alignments):
>> HNH_4  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.3e-06    0.0056      16      38 ..      81     103 ..      75     107 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.3e-06
                 ...SEEEESSTTTT---BSGGGE CS
       HNH_4  16 tkeydiDHilPrsrskdDsvsNk 38 
                 + +y+iDH++P  ++  +s++N+
  CCG91763.1  81 KHHYEIDHLIPLGLGGSNSIKNL 103
                 579*******************8 PP

>> HNH_5  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1     2e-06     0.009      10      32 ..      81     103 ..      78     107 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-06
       HNH_5  10 ekelseeHIiPeslGGkltisnl 32 
                 +++ +++H+iP  lGG+++i+nl
  CCG91763.1  81 KHHYEIDHLIPLGLGGSNSIKNL 103
                 45679*****************8 PP

>> HNH  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   4.6e-05      0.21      13      33 ..      83     103 ..      77     105 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.6e-05
         HNH  13 alevdHiipisqggaddieNl 33 
                   e+dH ip+  gg+++i Nl
  CCG91763.1  83 HYEIDHLIPLGLGGSNSIKNL 103
                 369*****************8 PP

>> Endonuclea_NS_2  DNA/RNA non-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.6e-05      0.16      52      79 ..      80     107 ..      67     128 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.6e-05
  Endonuclea_NS_2  52 rgklynggHLigsqfgGsnekkNlvtgt 79 
                      ++++y+  HLi   +gGsn  kNl +++
       CCG91763.1  80 DKHHYEIDHLIPLGLGGSNSIKNLWPQS 107
                      46789999******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1176.47
//
Query:       CCG91764.1  [L=431]
Description: HNH endonuclease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-55  185.1   0.0    1.3e-54  184.7   0.0    1.2  1  RRXRR     RRXRR protein
    8.9e-10   38.6   0.0    1.5e-09   37.9   0.0    1.3  1  HNH       HNH endonuclease
    5.4e-08   32.6   0.0    9.4e-08   31.8   0.0    1.3  1  HNH_5     HNH endonuclease
    8.7e-08   32.0   0.0    1.6e-07   31.1   0.0    1.4  1  HNH_4     HNH endonuclease


Domain annotation for each model (and alignments):
>> RRXRR  RRXRR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.7   0.0   2.9e-58   1.3e-54      12     174 .]       1     166 [.       1     166 [. 0.99

  Alignments for each domain:
  == domain 1  score: 184.7 bits;  conditional E-value: 2.9e-58
       RRXRR  12 mPtkpkrarklLkqgkAkvvrrkpftiqLkeesseesvqpvelklDpGskvtGiavvsek....kvllkaelelrgkdikkkleeRrelRraRRsrktr 106
                 mP+ p ra++lL+ g+A v+r +pfti+Lk ++s ++ qpv+lklDpGs++tG+a+ +e+    +v +++ele rg++i+ +l++Rr++Rr+R s +++
  CCG91764.1   1 MPCLPVRAKRLLSLGRAGVHRVYPFTIRLKFRTSGNT-QPVQLKLDPGSRTTGLALLREDgirqHVFWMVELEYRGEAIRASLTQRRAFRRHRSSANLQ 98 
                 8************************************.*******************9888888*********************************** PP

       RRXRR 107 yrqaRfdnRkkkegwLapslqhrvqthlrvvkrlakllpitkivvelvkfDiqklenpeisgaeyqqG 174
                 y+++Rf+nR ++egw+aps + rv+t++++v+rl +l+pit ++velv+fD+ +++npeisg+eyqqG
  CCG91764.1  99 YQPPRFNNRARPEGWIAPSSRLRVDTTMSWVNRLGRLAPITGLSVELVRFDTLAMQNPEISGVEYQQG 166
                 *******************************************************************9 PP

>> HNH  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   3.3e-13   1.5e-09       3      47 .]     187     228 ..     186     228 .. 0.92

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 3.3e-13
         HNH   3 yCgrkfhksealevdHiipisqggaddieNlqllCksCHnkkhdr 47 
                 yCg        le+d+i+p+s +g+d  +Nl+l+C++C+++k+++
  CCG91764.1 187 YCGARN---VPLEIDYIHPKSLEGSDRVSNLTLACQECNQAKGNQ 228
                 788886...679******************************996 PP

>> HNH_5  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.1e-11   9.4e-08       3      51 ..     187     233 ..     186     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2.1e-11
       HNH_5   3 yCgkeiaekelseeHIiPeslGGkltisnlvtlCkkCNqkkgqkvdaal 51 
                 yCg +  +  l++++I P+sl G+  +snl+ +C++CNq kg++  +++
  CCG91764.1 187 YCGAR--NVPLEIDYIHPKSLEGSDRVSNLTLACQECNQAKGNQPVEKF 233
                 89988..5559*******************************9877776 PP

>> HNH_4  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   3.6e-11   1.6e-07      19      52 ..     195     228 ..     190     230 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 3.6e-11
                 SEEEESSTTTT---BSGGGEEEES-GGGGTSSSS CS
       HNH_4  19 ydiDHilPrsrskdDsvsNkVLvlrdaNqeKsnr 52 
                 ++iD i P+s+   D vsN++L+++++Nq K+n+
  CCG91764.1 195 LEIDYIHPKSLEGSDRVSNLTLACQECNQAKGNQ 228
                 79******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3247.58
//
Query:       CCG91765.1  [L=1061]
Description: ATP-dependent exoDNAse (Exonuclease V) beta subunit (Contains helicase and exonuclease domains) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-40  137.4   1.2    1.2e-39  136.8   0.1    1.9  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
    3.6e-17   63.1   0.2    7.2e-16   58.8   0.0    2.7  2  AAA_19           AAA domain
    2.7e-15   56.6   0.1    1.1e-11   44.7   0.0    4.0  4  UvrD_C           UvrD-like helicase C-terminal domain
    1.6e-09   37.5   0.1     0.0027   17.5   0.0    2.4  2  UvrD_C_2         UvrD-like helicase C-terminal domain
    2.6e-06   27.5   0.0    5.9e-06   26.4   0.0    1.5  1  PDDEXK_1         PD-(D/E)XK nuclease superfamily
    7.7e-06   25.8   0.1          5    6.8   0.0    4.4  4  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00018   21.2   0.0    0.00064   19.4   0.0    2.0  2  AAA_12           AAA domain
  ------ inclusion threshold ------
      0.048   13.1   0.0       0.11   12.0   0.0    1.5  1  KdpD             Osmosensitive K+ channel His kinase sensor d


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   0.1   5.2e-43   1.2e-39      14     306 ..       5     405 ..       2     413 .. 0.76
   2 ?   -3.4   0.2       2.3   5.2e+03     168     172 ..     516     524 ..     481     591 .. 0.41

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 5.2e-43
                    SEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH.........HHHHCCHHCTT-H.......HHHHHHHHCTTSE CS
  UvrD-helicase  14 gpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee.........alkkaeqessdde.......rlrlalqnlsean 93 
                    g+++v+AsAG GKT+ l++r + l+  + i p+ ++++TFT+kAa+E+  R+ +         ++++++  s   +        l+  l  l  ++
     CCG91765.1   5 GHLIVIASAGVGKTHKLVKRAIDLLSRG-IAPTTVVIITFTRKAAQEIVDRLFSnlaqsilfeTCEEKL-AS---SqdlktvlTLKTLLDHLPYLH 95 
                    6789************************.*************************888887664333333.23...1345799999999******** PP

                    EEEHHHHHHHHHHHHHGGTT.SHTTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCH.................... CS
  UvrD-helicase  94 isTlHsfcqkilkkeanrig.ldpnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnik.................... 168
                      T++sf +k+l+    +     +nf++ld+       q++l +e+l +  + s++ld++ +e+  +++++ + +k                    
     CCG91765.1  96 FETIDSFFYKLLNHIPPEKRgAFSNFSLLDDFR-----QLKLREEILWNVLN-SKTLDNSIVEAF-QQIFVGEDFKnvfskywtlvekyypffqdl 184
                    *************98876655999999999999.....44444444443222.244444444422.333333333344566777999999999999 PP

                    ...........................................................HHHCCCHHHHHCHHHHHHHHHHHTTCCTTHHCHSS.. CS
  UvrD-helicase 169 ...........................................................keelslskskaeelrelvskakekqlspkelkkaf.. 203
                                                                                  l+++     +  +l+ + k+ +lsp         
     CCG91765.1 185 pqveywgapnlfddikditlnqeflslvahienlltnegiptklwdeqkknilsfpklyQNLLKAYDPNTRQCFQLILERKKYNLSPPLA---Lsl 277
                    999999999999999999999999999999999999999999999888876666665553333333333333333444444444444333...033 PP

                    ............TSCSHHHHHHHHHHHHHH....HHHHHHTCEEHHHHHHHHHHHHHH..CHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHT CS
  UvrD-helicase 204 ............ekasdlqkkiaeflkeyq....eqkkeenalDfsdllhallellee..neelaealrerykeiliDEyQDTnkiQyrilkllas 281
                                +k+ d+++ ia++l+ y     ++ k e  l f+d+   +le++    + + + +l +++++ liDE+QDT+  Q++++k  + 
     CCG91765.1 278 gklaeltltfflKKSHDRTRGIAQLLQLYDihyrKKIKTEGVLSFEDMPRVILEAFGLdlPTSSFFNLAKKWDHFLIDEFQDTSLLQWKVIKHFVD 373
                    478899999999999999999999998765211156677788************9888778888999************************99988 PP

                    TTTT.......EEEEE-GGG--GGGGTB-THH CS
  UvrD-helicase 282 ghee.......lfmvGDpkQsIYgFRgAdiel 306
                    +  +       +f+vGDpkQsIYg+RgA  el
     CCG91765.1 374 ELLQnedgsrsFFCVGDPKQSIYGWRGACGEL 405
                    7654568899******************7665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.3
                    H....HHHC CS
  UvrD-helicase 168 k....keel 172
                          +++
     CCG91765.1 516 AikrlLIDE 524
                    122221111 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   3.2e-19   7.2e-16      11     144 ..       5     397 ..       2     399 .. 0.89
   2 ?   -3.0   0.1       3.7   8.3e+03     105     128 ..     503     528 ..     485     545 .. 0.56

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 3.2e-19
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae...........atTiHrlal..................... 77 
                 ++l+v+a +G GKT+ l+++   l+++g ++p ++++++ft++Aa+e+ +rl + +a+           a                             
  CCG91765.1   5 GHLIVIASAGVGKTHKLVKRAIDLLSRG-IAPTTVVIITFTRKAAQEIVDRLFSNLAQsilfetceeklA-------Ssqdlktvltlktlldhlpylh 95 
                 5789*************99999999888.678********************776666888544444440.......4556666666666778999999 PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  CCG91765.1  96 fetidsffykllnhippekrgafsnfsllddfrqlklreeilwnvlnsktldnsiveafqqifvgedfknvfskywtlvekyypffqdlpqveywgapn 194
                 999999999****************************************************************************************** PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  CCG91765.1 195 lfddikditlnqeflslvahienlltnegiptklwdeqkknilsfpklyqnllkaydpntrqcfqlilerkkynlspplalslgklaeltltfflkksh 293
                 *************************************************************************************************** PP

      AAA_19  78 ..........................ldfddlltealelle......eaeeekklqeee.llivDEfqdvdelqyrLlkallgekkk.......lllvG 136
                                           l f+d     l   e       +++  +l +++ ++++DEfqd++ lq++++k  ++e  +       ++ vG
  CCG91765.1 294 drtrgiaqllqlydihyrkkiktegvLSFEDMPRVIL---EafgldlPTSSFFNLAKKWdHFLIDEFQDTSLLQWKVIKHFVDELLQnedgsrsFFCVG 389
                 ************9999888888888855555443333...24447674444455678999*****************99999766444788999***** PP

      AAA_19 137 DpdQliyv 144
                 Dp+Q+iy 
  CCG91765.1 390 DPKQSIYG 397
                 ******96 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.7
      AAA_19 105 llivDEfqdvd.elqyrLl.kallge 128
                   +v  ++++  e ++rLl ++++++
  CCG91765.1 503 EQVVNNSSMLRfEAIKRLLiDEIKPQ 528
                 55566666666555555441344433 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.33   7.4e+02      56     119 ..      19      84 ..       8      94 .. 0.82
   2 ?   -1.1   0.1      0.42   9.3e+02      87     166 ..     214     289 ..     194     372 .. 0.60
   3 !    5.7   0.0    0.0037       8.2      59      94 ..     514     553 ..     424     593 .. 0.82
   4 !   44.7   0.0   5.1e-15   1.1e-11     284     345 ..     684     783 ..     646     787 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.33
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
      UvrD_C  56 ekiaatikallekneklediavLvRsnkdadkiskaLkkegipfnvvd..eekfFkreeikdilay 119
                 +k ++ + +ll++ ++ +++ +++ + k a++i + L ++  + ++ +  eek+ + +  k++l +
  CCG91765.1  19 HKLVKRAIDLLSRGIAPTTVVIITFTRKAAQEIVDRLFSNLAQSILFEtcEEKLASSQDLKTVLTL 84 
                 555666666777999999999999999999999999999998888887778999999999999876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.42
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  87 kiskaLkkegipfnvvdeekfFkreeikdilaylkllankqdkia...lkrilkrlvlgigkatveriseelkklglsltDfi 166
                 +i++ L +egip+++ de+k    + i  +  + + l+  +d ++   +++il+r++ ++++ ++  +    k + l lt f+
  CCG91765.1 214 HIENLLTNEGIPTKLWDEQK----KNILSFPKLYQNLLKAYDPNTrqcFQLILERKKYNLSPPLALSL---GKLAELTLTFFL 289
                 45555555555555555443....22222222222222222222200033344444444444444444...333333333333 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0037
                 xxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  59 aatikall....ekneklediavLvRsnkdadkiskaLkk 94 
                 ++ ik+ll    + +ek+ ++a+Lv +nk+a  i + L++
  CCG91765.1 514 FEAIKRLLideiKPQEKKLSCAILVQTNKEAADIFHYLSS 553
                 5667777788778999******************999876 PP

  == domain 4  score: 44.7 bits;  conditional E-value: 5.1e-15
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxx.......xxxxxxxxxxxxxxxxxxx RF
      UvrD_C 284 kekipiiTiHqAKGlEFdvVflagleegtfP....................................syrskk.......ekrleEEkRlfYVaiTRAk 339
                  ++i+i T+H+AKGlEFdvVf+ +l+ g +                                          k        ++  E   l+YVa+TRA+
  CCG91765.1 684 PSSIQIRTVHSAKGLEFDVVFVTELK-GSYRtamnqprdqpimyqspekerrifflpkreviekipsL----KavykkliGEEALEKISLLYVAMTRAR 777
                 389*********************75.44543566668888888887777777777777666655530....25554455445566779********** PP

                 xxxxxx RF
      UvrD_C 340 krLfis 345
                 + L+i 
  CCG91765.1 778 QGLYIV 783
                 ****96 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.2e-06    0.0027       6      22 ..     691     707 ..     687     719 .. 0.83
   2 !   17.4   0.0   1.3e-06    0.0029      34      52 .]     765     783 ..     757     783 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.2e-06
    UvrD_C_2   6 tihkaQGsefpaVivfd 22 
                 t+h a+G+ef++V+v++
  CCG91765.1 691 TVHSAKGLEFDVVFVTE 707
                 9**************65 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.3e-06
    UvrD_C_2  34 rrrlLYtavTRAreklilv 52 
                 +  lLY+a+TRAr+ l++v
  CCG91765.1 765 KISLLYVAMTRARQGLYIV 783
                 6779*************98 PP

>> PDDEXK_1  PD-(D/E)XK nuclease superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   2.6e-09   5.9e-06      33     197 ..     897    1049 ..     884    1057 .. 0.63

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.6e-09
    PDDEXK_1   33 apdlGtlvHaaleefyewkkldke...dleelleeaveelwpellleeeilessarlrylaeklkevleklverlaeeleakrgfrpvalelefg.. 124 
                  + ++G+ +H++++++ +   l++    +l++l       +++ +++e e+       + +++ l+ + ++ ++++ ++ +      ++ +e  f+  
  CCG91765.1  897 NKEYGRKIHELFARLER---LTDPfvqSLQKL-------ALEYKGEETER-------NPFQDVLECLQAPEIQKIFTPSQDT----EIWIERNFCle 972 
                  34889999999998877...222211122222.......23333344444.......8888888777777777777744444....45555444443 PP

    PDDEXK_1  125 ..gekvrLkGriDrvd....dkeg.elriiDyKtgsappkskelaelkegl..QlllYllalaegeelkeegepagalylrl 197 
                    g  + +kG +Drv     + +g  ++i+D+Kt       + l el++    QlllY  al +  + ++   +++++++++
  CCG91765.1  973 veG--LWIKGSFDRVHmkieSGKGiNCEIYDFKTDFVI-SLEGLHELAKKYhcQLLLYRKALCKLLQVEPT--QVRVFLVSV 1049
                  325..67*********98744444*********86544.44444444444444***********9444433..777777766 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.01        23       2      49 ..       8      54 ..       7      71 .. 0.71
   2 !    6.8   0.0    0.0022         5      69     124 ..     373     418 ..     338     425 .. 0.80
   3 ?    2.7   0.0     0.041        91     184     201 ..     688     705 ..     672     720 .. 0.84
   4 !    5.7   0.0    0.0047        10     216     233 ..     766     783 ..     752     784 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.01
  Viral_helicase1  2 vvhGvpGcGKStlirkllrtsliltvnrptaelltegkpklpnlsvrt 49
                     +v + +G GK++ ++k + + l  + + pt++++     k+ ++ v +
       CCG91765.1  8 IVIASAGVGKTHKLVKRAID-LLSRGIAPTTVVIITFTRKAAQEIVDR 54
                     67778************999.677777777766666555555555544 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0022
  Viral_helicase1  69 DEylllhaGyilllaalskaklvilfGDplQipfhsrnasfllahlpsslshrvgr 124
                      DE          ll+++++++ ++++GDp+Q+ +  r a  +l + ++sl h +++
       CCG91765.1 373 DE----------LLQNEDGSRSFFCVGDPKQSIYGWRGACGELLDSIVSLFHMEKQ 418
                      44..........466679**************999888888888888888777765 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.041
  Viral_helicase1 184 evttvhevqGltfdkVtl 201
                      ++ tvh++ Gl+fd+V +
       CCG91765.1 688 QIRTVHSAKGLEFDVVFV 705
                      488************976 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0047
  Viral_helicase1 216 renllvAlTRhrkslvil 233
                       + l+vA+TR+r++l+i+
       CCG91765.1 766 ISLLYVAMTRARQGLYIV 783
                      5689***********997 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.8     4e+03     103     138 ..      29      62 ..      19     102 .. 0.55
   2 !   19.4   0.0   2.9e-07   0.00064     142     198 ..     682     786 ..     632     787 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
      AAA_12 103 lkkgseeerkkigvitpYraqvellkkklkekeeek 138
                 l++g +   + + +it+ r+ ++ + ++l ++  ++
  CCG91765.1  29 LSRGIAP--TTVVIITFTRKAAQEIVDRLFSNLAQS 62 
                 4444444..688888888888888877776544444 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.9e-07
      AAA_12 142 e....ievntvdgfQGrekdviilslVRsnekk............................................eigflkderrlNValTRAkskl 192
                 e    i++ tv +  G e dv++++  + + +                                                 l+    l Va+TRA++ l
  CCG91765.1 682 EdpssIQIRTVHSAKGLEFDVVFVTELKGSYRTamnqprdqpimyqspekerrifflpkreviekipslkavykkliGEEALEKISLLYVAMTRARQGL 780
                 044459********************99984444556777889999999999*********************98554449****************** PP

      AAA_12 193 iivGnk 198
                 +ivG+ 
  CCG91765.1 781 YIVGEM 786
                 ****86 PP

>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.9e-05      0.11      11      58 ..      11      58 ..       5      92 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.9e-05
        KdpD 11 aapGvGktyamLeeaqelkeegvdvviglvethgrketealleglevi 58
                a++GvGkt++++++a +l ++g+  +  ++ t +rk  ++ +++l + 
  CCG91765.1 11 ASAGVGKTHKLVKRAIDLLSRGIAPTTVVIITFTRKAAQEIVDRLFSN 58
                789*******************99888888888888888888777443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1061 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.89u 0.26s 00:00:01.14 Elapsed: 00:00:00.49
# Mc/sec: 6518.51
//
Query:       CCG91766.1  [L=932]
Description: Inactivated superfamily I helicase and RecB family exonuclease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-27   95.0   0.0    1.6e-26   93.8   0.0    1.6  1  PDDEXK_1  PD-(D/E)XK nuclease superfamily
    1.1e-06   28.6   0.0    3.5e-06   26.9   0.0    1.8  2  DUF3799   PDDEXK-like domain of unknown function (DUF3799)


Domain annotation for each model (and alignments):
>> PDDEXK_1  PD-(D/E)XK nuclease superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0   1.8e-30   1.6e-26       1     241 [.     630     897 ..     630     899 .. 0.79

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 1.8e-30
    PDDEXK_1   1 rlSvsrletfleCplrfflryllglre....eeeleapdlGtlvHaaleefyewkkldke...dleelleeaveelwpellleeeilessarlrylaek 92 
                 +lSvs+l+++l+Cp+ f+l+++++ ++    + e++++ +G+l+H++l +f + ++   +   d +++    +e ++++++ e+   + +  ++ ++++
  CCG91766.1 630 SLSVSALNDYLNCPFYFYLKHKMHWQPvtlpKGEMNESVFGSLIHKVLGDFGKNTEA--RgwnDPDQIY-SFLESQLEAEFTERFGKKRTIGFQLQQKA 725
                 59***********************6668889999999***************3333..3357777777.88898888888888887788888999999 PP

    PDDEXK_1  93 lkevleklverlaeeleakrgfrpvalelefg....gekvrLkGriDrvd.dkegelriiDyKtgsappkske.......................lae 163
                 l e+l+++   + + + +++g +++ +e ef     g  ++++GriDr+d   ++++ iiDyKt s+  k+                            
  CCG91766.1 726 LAERLKAF--SFFQADWRNQGAEIIDVEKEFElqieG--LTIRGRIDRIDyLGDDKVMIIDYKTLSTGIKKNPfnshlcisregkeeqppaeayffS-- 818
                 99999999..888888888888899999888884545..99*********877779*******9885534333678888888777777666555551.. PP

    PDDEXK_1 164 lkegl.........QlllYllalaegeelkeegepagalylrleepkvkdeevvkkmalteeel.eallqeleelaeeilag.efparp 241
                               Ql++Y + ++     +++  ++ga++++l   +vk+++++k  +++  ++ e+    +++++++i++    p++p
  CCG91766.1 819 ----GgkrwrwvnfQLPIYYYGVQSM--GLGK--NIGAAFYFL--SRVKENSRLKVWEEDNSNFlEESIVAIRRIIRAIKENkFWPPNP 897
                 ....0444455777************..4544..9********..88998888888888888888888889999999999664666666 PP

>> DUF3799  PDDEXK-like domain of unknown function (DUF3799)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   3.9e-10   3.5e-06       1     141 [.     632     798 ..     632     803 .. 0.78
   2 ?   -2.8   0.0      0.48   4.3e+03     156     213 ..     828     888 ..     824     894 .. 0.67

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.9e-10
                 EHHHHHHHH--HHHHHHHHTTS---.....---HHHHHHHHHHHH...HHT-H..HHHHH..........H-GGGB-T.....TSSB-HHHHHHHHHHH CS
     DUF3799   1 SvSqlksflkceaaalaklngewqe.....eetkallvGsyvHsy...fEsklfeeeFkk..........enkealakektakkgelkaefkaaekmie 81 
                 SvS+l + l+c++++  k++ +wq+      e +   +Gs++H++   f  ++ +  + +          + +  +++ +  kk+ +  + ++ ++++e
  CCG91766.1 632 SVSALNDYLNCPFYFYLKHKMHWQPvtlpkGEMNESVFGSLIHKVlgdFGKNTEARGWNDpdqiysflesQLEAEFTE-RFGKKRTIGFQLQQ-KALAE 728
                 9*************************99886667778*******9543344444444555999999988655555555.66667777765544.689** PP

                 HHHT-HHHHH.HTT.SEE....EEEEEEEETTEEEEEEE...EEEET.TTEEEEEEEES.-SS--EEETT CS
     DUF3799  82 rlkadelfek.lls.Gek....evivtgelfgvewkiki...DllnpekkyivDlKttk.diskkkfned 141
                 rlka ++f+  +++ G++    e+ +  +++g++ +++i   D+l ++k +i+D+Kt +  i+k+ fn +
  CCG91766.1 729 RLKAFSFFQAdWRNqGAEiidvEKEFELQIEGLTIRGRIdriDYLGDDKVMIIDYKTLStGIKKNPFNSH 798
                 ********98888889775655778888999******8622257788***********967888888865 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.48
                 HHHHHHHHHHHH.HHS--..--EEEEEEE-SSS--EEEEEE-HHHHHHHHHHHHHHHHHHH CS
     DUF3799 156 lQaavYqellrq.ktgkt..lefviiaveketppdkavitldqelleeglkeveenlerlk 213
                 +Q  +Y  +++    gk+  ++f++++  ke+   k   + + ++lee++  +++ ++ +k
  CCG91766.1 828 FQLPIYYYGVQSmGLGKNigAAFYFLSRVKENSRLKVWEEDNSNFLEESIVAIRRIIRAIK 888
                 5667777777665678887778888888888766555555577777777777777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (932 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 6469.03
//
Query:       CCG91767.1  [L=356]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.012   15.1   0.1       0.22   10.9   0.0    2.1  2  Diphthamide_syn  Putative diphthamide synthesis protein
      0.071   13.9   1.3       0.22   12.3   0.3    2.3  2  RecG_N           RecG N-terminal helical domain
       0.08   12.9   0.0       0.23   11.4   0.0    1.7  2  Rsd_AlgQ         Regulator of RNA polymerase sigma(70) subuni


Domain annotation for each model (and alignments):
>> Diphthamide_syn  Putative diphthamide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.6e-05      0.22     225     294 ..     134     203 ..     130     213 .. 0.90
   2 ?    1.9   0.0     0.021   1.3e+02      62      87 ..     285     310 ..     274     322 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.6e-05
  Diphthamide_syn 225 elverlkkllkeagkksylvlvgelnpakLanfa.eidafVlvaCprlsiddgkeFekPvltpyElevalg 294
                        v+  +k l+e+ k+ y ++ ge n + L++f  + +  ++ +  ++ ++  k+F   v++ yE +v+l+
       CCG91767.1 134 GSVKDAEKFLEEHYKRLYGIVSGEANYDSLSQFVmDNEKLINFGYYENELILIKRFGA-VISSYESQVILN 203
                      668888999************************65899******************85.99*******998 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.021
  Diphthamide_syn  62 rlpvlYvfveieldvehlvetlkknf 87 
                      +l+++Y +ve+e+d++++++++k ++
       CCG91767.1 285 HLRTIYKYVEKEFDIDDIASAVKVKL 310
                      7899*****************99887 PP

>> RecG_N  RecG N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   3.7e-05      0.22       3      62 ..     140     199 ..     138     211 .. 0.90
   2 ?   -1.0   0.0      0.52   3.1e+03      14      40 ..     290     316 ..     253     327 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHHHTS---TTT........HHHHHHH---GGGG-HHHH.HHHHHHHHHHTTS CS
      RecG_N   3 EeFLeelekllkkvlsgkleteelieeikkkleliddplleneevlkeklskfldYikpi 62 
                 E FLee +k l  ++sg+ + + l +++ ++ +li+    ene +l +++++ ++ +++ 
  CCG91767.1 140 EKFLEEHYKRLYGIVSGEANYDSLSQFVMDNEKLINFGYYENELILIKRFGAVISSYESQ 199
                 99*************************************************999877655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.52
                 TS---TTT........HHHHHHH---G CS
      RecG_N  14 kkvlsgkleteelieeikkkleliddp 40 
                  k ++++ +++++   +k kl+ ++++
  CCG91767.1 290 YKYVEKEFDIDDIASAVKVKLDRVEQS 316
                 344455555666666666666655555 PP

>> Rsd_AlgQ  Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.8e-05      0.23      89     128 ..      22      62 ..      17      74 .. 0.79
   2 ?   -2.8   0.0      0.93   5.6e+03      73     102 ..     249     278 ..     248     304 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.8e-05
    Rsd_AlgQ  89 elakelypkieatTeaaldfndkyee.aadedeleeldedL 128
                 e+a++++++i+a T ++++f+dk++  a+  +++ ++   L
  CCG91767.1  22 EEANRIVKEISARTTQLIAFKDKMTAkAQVVTQIYKFGVGL 62 
                 689*********************99666666666666555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.93
    Rsd_AlgQ  73 YeqlveeaeefgdkelelakelypkieatT 102
                 Y+++ ee  +f +++l++++++y+   +  
  CCG91767.1 249 YQKFSEEGMNFVQDKLSIVESIYSVFANVN 278
                 666666666666767777777776554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2428.69
//
Query:       CCG91768.1  [L=279]
Description: Uncharacterized membrane protein, predicted transporter [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1898.29
//
Query:       CCG91769.1  [L=596]
Description: TPR repeats containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-34  113.7   5.8    6.8e-06   25.8   0.0    8.0  8  TPR_2         Tetratricopeptide repeat
    7.6e-33  111.0   2.3    2.7e-06   27.0   0.0    7.4  8  TPR_1         Tetratricopeptide repeat
    8.9e-24   82.9   0.0    2.4e-05   23.9   0.0    6.7  6  TPR_11        TPR repeat
    3.2e-22   76.8   2.7     0.0004   20.4   0.0    7.1  7  TPR_8         Tetratricopeptide repeat
    1.2e-19   69.2   0.0     0.0049   17.2   0.0    6.7  6  TPR_17        Tetratricopeptide repeat
    3.4e-19   68.8   4.4    5.4e-08   33.0   0.1    4.1  5  ANAPC3        Anaphase-promoting complex, cyclosome, subunit 
    1.1e-15   57.9   0.1    0.00069   20.1   0.0    4.8  5  TPR_19        Tetratricopeptide repeat
    2.6e-15   55.9   0.3      0.037   14.7   0.0    7.1  7  TPR_6         Tetratricopeptide repeat
    2.4e-13   50.5   0.1      0.056   14.1   0.0    5.1  5  TPR_16        Tetratricopeptide repeat
    7.8e-13   48.4   0.0      0.032   14.4   0.0    5.1  5  TPR_9         Tetratricopeptide repeat
    5.1e-11   42.4   3.3      0.033   15.0   0.0    7.3  8  TPR_14        Tetratricopeptide repeat
    8.5e-11   42.0   6.8    0.00071   19.8   0.2    5.6  5  TPR_12        Tetratricopeptide repeat
    4.7e-09   35.7   1.5      0.045   13.8   0.0    5.1  4  TPR_7         Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.016   15.2   0.1       0.07   13.2   0.0    2.1  2  SRP_TPR_like  Putative TPR-like repeat
      0.025   13.8   8.8        2.2    7.4   0.4    3.7  3  TPR_15        Tetratricopeptide repeat
      0.026   13.6   0.3        1.7    7.5   0.0    3.3  4  ChAPs         ChAPs (Chs5p-Arf1p-binding proteins)
       0.05   13.7   0.0       0.14   12.3   0.0    1.8  1  Fis1_TPR_C    Fis1 C-terminal tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.059        62       3      32 ..     280     309 ..     279     311 .. 0.88
   2 ?   -0.7   0.0         2   2.1e+03       8      29 ..     319     340 ..     319     341 .. 0.87
   3 !   11.3   0.0   0.00028       0.3       7      32 ..     352     377 ..     348     379 .. 0.84
   4 !   25.8   0.0   6.5e-09   6.8e-06       3      33 ..     382     412 ..     380     413 .. 0.95
   5 !   13.7   0.0   4.8e-05      0.05       2      34 .]     415     447 ..     414     447 .. 0.95
   6 !   21.0   0.0   2.3e-07   0.00024       3      34 .]     450     481 ..     448     481 .. 0.96
   7 !   12.0   0.0   0.00017      0.18       3      33 ..     484     514 ..     482     515 .. 0.94
   8 !   20.1   0.0   4.2e-07   0.00044       3      33 ..     518     548 ..     516     549 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.059
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldP 32 
                 a+ +    y++l  +++A  a +kA++ + 
  CCG91769.1 280 AWAAASANYLRLSLWDKADFAARKAIAMNS 309
                 678888899*****************9985 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2
       TPR_2   8 GlayyklgdyeeAleafekAle 29 
                 +++++ +++++ A++a+ +A e
  CCG91769.1 319 AQILIGRKEWNPAIDALLQARE 340
                 678899999*********9975 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00028
       TPR_2   7 lGlayyklgdyeeAleafekAleldP 32 
                 lG ++yk g+ye+A+e ++  +e  P
  CCG91769.1 352 LGICLYKIGQYEKAVEELKSYVENRP 377
                 89*************99876666555 PP

  == domain 4  score: 25.8 bits;  conditional E-value: 6.5e-09
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 a+  +G++y k+ ++e+A+ af kA +l+P+
  CCG91769.1 382 AWILMGEIYQKMHHWEQAISAFTKAARLNPQ 412
                 8*****************************7 PP

  == domain 5  score: 13.7 bits;  conditional E-value: 4.8e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +a+  ++++y++l ++e+A ea+ +   l+P+n
  CCG91769.1 415 RAWVGMADSYRELSKWEQASEAYTELSLLEPTN 447
                 699**************************9997 PP

  == domain 6  score: 21.0 bits;  conditional E-value: 2.3e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++ynlGl+++k+ + + A+++f +++el+P++
  CCG91769.1 450 VWYNLGLVLLKMEQEKFARACFMRVIELNPKD 481
                 8*****************************86 PP

  == domain 7  score: 12.0 bits;  conditional E-value: 0.00017
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 +++n G +  ++g+   A +a++kA+ ldP+
  CCG91769.1 484 GWFNFGVLSQRAGERLVAMDAYKKAVNLDPD 514
                 79****************************8 PP

  == domain 8  score: 20.1 bits;  conditional E-value: 4.2e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 +++nlG++y +l  y eA+ea++kA +  P+
  CCG91769.1 518 GWFNLGCLYQELHLYPEAIEAWRKAEKSLPG 548
                 7************************887775 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.94   9.9e+02      11      33 ..     288     310 ..     288     311 .. 0.85
   2 ?   -2.6   0.0       5.5   5.8e+03      10      27 ..     321     338 ..     319     340 .. 0.78
   3 !   11.0   0.0   0.00027      0.29       7      22 ..     352     367 ..     352     379 .. 0.88
   4 !   24.6   0.0   1.4e-08   1.5e-05       2      33 ..     381     412 ..     380     413 .. 0.95
   5 !   11.6   0.0   0.00018      0.19       2      26 ..     415     439 ..     414     447 .. 0.87
   6 !   27.0   0.0   2.5e-09   2.7e-06       3      34 .]     450     481 ..     448     481 .. 0.96
   7 !    7.7   0.0    0.0031       3.3      20      34 .]     501     515 ..     501     515 .. 0.95
   8 !   20.6   0.0   2.6e-07   0.00027       3      27 ..     518     542 ..     517     549 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.94
                 HHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  11 yfklgkydeAleyyekALelnPn 33 
                 y++l  +d+A  + +kA+  n +
  CCG91769.1 288 YLRLSLWDKADFAARKAIAMNSS 310
                 77888899999999****99976 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.5
                 HHHHTT-HHHHHHHHHHH CS
       TPR_1  10 ayfklgkydeAleyyekA 27 
                 ++   ++++ A+++  +A
  CCG91769.1 321 ILIGRKEWNPAIDALLQA 338
                 6666789999***99888 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00027
                 HHHHHHHTT-HHHHHH CS
       TPR_1   7 lGnayfklgkydeAle 22 
                 lG +++k g+y++A+e
  CCG91769.1 352 LGICLYKIGQYEKAVE 367
                 8*************98 PP

  == domain 4  score: 24.6 bits;  conditional E-value: 1.4e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                  a+  +G +y+k+  +++A+ ++ kA +lnP+
  CCG91769.1 381 SAWILMGEIYQKMHHWEQAISAFTKAARLNPQ 412
                 69*****************************7 PP

  == domain 5  score: 11.6 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyek 26 
                 +a+ +++  y++l k+++A e+y +
  CCG91769.1 415 RAWVGMADSYRELSKWEQASEAYTE 439
                 79*********************87 PP

  == domain 6  score: 27.0 bits;  conditional E-value: 2.5e-09
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 ++ynlG++++k+++ + A +++ +++elnP++
  CCG91769.1 450 VWYNLGLVLLKMEQEKFARACFMRVIELNPKD 481
                 7*****************************86 PP

  == domain 7  score: 7.7 bits;  conditional E-value: 0.0031
                 HHHHHHHHHHHSTTH CS
       TPR_1  20 AleyyekALelnPnn 34 
                 A ++y+kA+ l+P++
  CCG91769.1 501 AMDAYKKAVNLDPDF 515
                 899**********97 PP

  == domain 8  score: 20.6 bits;  conditional E-value: 2.6e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekA 27 
                  ++nlG +y++l  y eA+e+ +kA
  CCG91769.1 518 GWFNLGCLYQELHLYPEAIEAWRKA 542
                 5***********************9 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.9e-05     0.031       4      41 ..     356     393 ..     355     393 .. 0.96
   2 !    9.6   0.0   0.00066       0.7      10      38 ..     396     424 ..     395     424 .. 0.92
   3 !   23.9   0.0   2.3e-08   2.4e-05       2      41 ..     422     461 ..     421     462 .. 0.96
   4 ?    5.1   0.0     0.017        18      13      39 ..     467     493 ..     466     496 .. 0.84
   5 !   18.5   0.0   1.1e-06    0.0012      13      40 ..     501     528 ..     501     529 .. 0.94
   6 ?    4.1   0.0     0.036        37      10      22 ..     532     544 ..     532     555 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.9e-05
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 +y+ G+ye+A+e++k  ++ +P  ++a+  +G++y+k+
  CCG91769.1 356 LYKIGQYEKAVEELKSYVENRPRHVSAWILMGEIYQKM 393
                 6999*******************************996 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00066
      TPR_11  10 yeeAieaYkkAlkldPdnaeayynLGlay 38 
                 +e+Ai a+ kA +l+P++ +a+ ++++ y
  CCG91769.1 396 WEQAISAFTKAARLNPQSIRAWVGMADSY 424
                 89*******************99888766 PP

  == domain 3  score: 23.9 bits;  conditional E-value: 2.3e-08
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 d y+e+ k+e+A eaY +   l P+n  ++ynLGl+++k+
  CCG91769.1 422 DSYRELSKWEQASEAYTELSLLEPTNGAVWYNLGLVLLKM 461
                 89***********************************986 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.017
      TPR_11  13 AieaYkkAlkldPdnaeayynLGlayy 39 
                 A +++ + ++l+P++ + ++n G++ +
  CCG91769.1 467 ARACFMRVIELNPKDRDGWFNFGVLSQ 493
                 66788899*************998755 PP

  == domain 5  score: 18.5 bits;  conditional E-value: 1.1e-06
      TPR_11  13 AieaYkkAlkldPdnaeayynLGlayyk 40 
                 A+ aYkkA++ldPd+   ++nLG +y++
  CCG91769.1 501 AMDAYKKAVNLDPDFGIGWFNLGCLYQE 528
                 7899*******************99987 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.036
      TPR_11  10 yeeAieaYkkAlk 22 
                 y+eAiea++kA k
  CCG91769.1 532 YPEAIEAWRKAEK 544
                 89*********65 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       2.4   2.5e+03      18      32 ..     295     309 ..     281     311 .. 0.83
   2 !    7.8   0.0    0.0039       4.1       7      33 ..     352     378 ..     347     379 .. 0.86
   3 !   15.5   0.0   1.3e-05     0.014       2      33 ..     381     412 ..     380     413 .. 0.95
   4 !    6.7   0.0    0.0094       9.9       2      33 ..     415     446 ..     414     447 .. 0.92
   5 !   20.4   0.0   3.8e-07    0.0004       3      34 .]     450     481 ..     448     481 .. 0.96
   6 !   10.5   0.0   0.00057       0.6       3      33 ..     484     514 ..     483     515 .. 0.93
   7 !    8.6   0.1    0.0023       2.5       4      27 ..     519     542 ..     518     545 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHHHH CS
       TPR_8  18 eeAkeyyekaleldp 32 
                 ++A  + +ka+ ++ 
  CCG91769.1 295 DKADFAARKAIAMNS 309
                 688999999999886 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0039
                 HHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldpd 33 
                 lg ++ k g+ye+A+e ++ ++e +p 
  CCG91769.1 352 LGICLYKIGQYEKAVEELKSYVENRPR 378
                 6778899************99998885 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 1.3e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +a+ ++g iy+k+   e+A++++ ka +l+p+
  CCG91769.1 381 SAWILMGEIYQKMHHWEQAISAFTKAARLNPQ 412
                 69*****************************7 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0094
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +a++ +++ y++l + e+A e+y +   l+p+
  CCG91769.1 415 RAWVGMADSYRELSKWEQASEAYTELSLLEPT 446
                 89**********************99999987 PP

  == domain 5  score: 20.4 bits;  conditional E-value: 3.8e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 ++ynlg+++lk+++ + A +++++++el+p++
  CCG91769.1 450 VWYNLGLVLLKMEQEKFARACFMRVIELNPKD 481
                 8*****************************96 PP

  == domain 6  score: 10.5 bits;  conditional E-value: 0.00057
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                  ++n g + +  g+   A+ +y+ka+ ldpd
  CCG91769.1 484 GWFNFGVLSQRAGERLVAMDAYKKAVNLDPD 514
                 5999999999999*****************8 PP

  == domain 7  score: 8.6 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyeka 27 
                 ++nlg++y++l  y eA+e+ +ka
  CCG91769.1 519 WFNLGCLYQELHLYPEAIEAWRKA 542
                 9******************99998 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.081        85      19      34 .]     352     367 ..     347     367 .. 0.90
   2 !    7.4   0.0    0.0062       6.6       6      33 ..     373     400 ..     369     401 .. 0.92
   3 !    7.9   0.0    0.0042       4.4       2      32 ..     403     433 ..     402     435 .. 0.93
   4 !   13.7   0.0   5.9e-05     0.063       2      28 ..     437     463 ..     436     469 .. 0.81
   5 !   10.1   0.0   0.00082      0.86       1      27 [.     470     496 ..     470     500 .. 0.93
   6 !   17.2   0.0   4.6e-06    0.0049       1      33 [.     504     536 ..     504     537 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.081
      TPR_17  19 LAelllknGdlmtArq 34 
                 L+ +l+k+G++++A++
  CCG91769.1 352 LGICLYKIGQYEKAVE 367
                 899**********975 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0062
      TPR_17   6 leldPnnadaynnLAelllknGdlmtAr 33 
                 +e+ P ++ a+ +++e++ k + +++A+
  CCG91769.1 373 VENRPRHVSAWILMGEIYQKMHHWEQAI 400
                 5899******************999997 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0042
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 ++ka++l+P +  a+  +A  ++++ ++++A
  CCG91769.1 403 FTKAARLNPQSIRAWVGMADSYRELSKWEQA 433
                 89*********************99999988 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 5.9e-05
      TPR_17   2 ylkaleldPnnadaynnLAelllknGd 28 
                 y++   l+P+n  +++nL+ +llk  +
  CCG91769.1 437 YTELSLLEPTNGAVWYNLGLVLLKMEQ 463
                 66777789**************97766 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00082
      TPR_17   1 lylkaleldPnnadaynnLAelllknG 27 
                 ++ +++el+P++ d ++n ++l  ++G
  CCG91769.1 470 CFMRVIELNPKDRDGWFNFGVLSQRAG 496
                 799******************998887 PP

  == domain 6  score: 17.2 bits;  conditional E-value: 4.6e-06
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 +y+ka+ ldP+    ++nL+ l+ +++ + +A+
  CCG91769.1 504 AYKKAVNLDPDFGIGWFNLGCLYQELHLYPEAI 536
                 5***********************998888876 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.2   7.1e-10   7.4e-07       4      81 ..     293     371 ..     290     372 .. 0.93
   2 !   33.0   0.1   5.1e-11   5.4e-08      26      81 ..     349     405 ..     343     406 .. 0.93
   3 !   20.3   0.0   4.5e-07   0.00047      27      79 ..     384     437 ..     376     440 .. 0.89
   4 !    9.4   0.0    0.0012       1.2      29      71 ..     420     463 ..     404     474 .. 0.60
   5 ?   -1.1   0.0       2.1   2.2e+03      65      78 ..     524     538 ..     493     542 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 7.1e-10
                 -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   4 nyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                  +++A f a ++ a+++ ++    l+A+ l  +++++ A++ l +a ++   s++++y ++ cl+k+++ye+A+  L++
  CCG91769.1 293 LWDKADFAARKAIAMNSSDYHYPVLFAQILIGRKEWNPAIDALLQArEEGALSKEIAYPLGICLYKIGQYEKAVEELKS 371
                 589999*******8888888889999***********************************************998875 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 5.1e-11
                 HHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  26 ayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 ay l+ cly+ gqy++A e l+++ + ++++  +++l+++ + k++++e+Ai+a+ k
  CCG91769.1 349 AYPLGICLYKIGQYEKAVEELKSYvENRPRHVSAWILMGEIYQKMHHWEQAISAFTK 405
                 788999***********************************************9976 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 4.5e-07
                 HHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  27 yllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79 
                  l ++ + ++  +++A+  + ka +ln++s+++++ +A ++ +L+k+e+A  a+
  CCG91769.1 384 ILMGEIYQKMHHWEQAISAFTKAaRLNPQSIRAWVGMADSYRELSKWEQASEAY 437
                 456999********************************************9886 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.0012
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT- CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkk 71 
                  A ++ +++++++A e + ++  l++++ +++y ++ +llk+++
  CCG91769.1 420 MADSYRELSKWEQASEAYTELsLLEPTNGAVWYNLGLVLLKMEQ 463
                 46667777777777777777766666666777777777777665 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 2.1
                 HHH.HTT-HHHHHHH CS
      ANAPC3  65 cll.kLkkyeeAiaa 78 
                 cl+ +L+ y eAi a
  CCG91769.1 524 CLYqELHLYPEAIEA 538
                 777688999999987 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.38     4e+02      17      54 ..     304     341 ..     295     346 .. 0.78
   2 !   19.8   0.0   7.8e-07   0.00082      10      58 ..     331     379 ..     322     389 .. 0.84
   3 !   20.1   0.0   6.5e-07   0.00069       7      53 ..     396     442 ..     391     445 .. 0.90
   4 !   11.1   0.0   0.00042      0.44      12      59 ..     435     482 ..     433     485 .. 0.89
   5 ?    3.4   0.0      0.11   1.1e+02       9      56 ..     500     547 ..     494     552 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.38
      TPR_19  17 alqedpknaearllLAeallalgqldeAealLdalpee 54 
                 a++ +  +     l A++l+  ++++ A+++L ++ ee
  CCG91769.1 304 AIAMNSSDYHYPVLFAQILIGRKEWNPAIDALLQAREE 341
                 555555555555679*****************999887 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 7.8e-07
      TPR_19  10 AlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 A+++l qa +e + + e+++ L ++l++ gq+++A + L+ + e  p +
  CCG91769.1 331 AIDALLQAREEGALSKEIAYPLGICLYKIGQYEKAVEELKSYVENRPRH 379
                 888888998888889****************************999986 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 6.5e-07
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpe 53 
                  ++A++++++a   +p++ +a+ ++A+ + +l  +++A ++  +l +
  CCG91769.1 396 WEQAISAFTKAARLNPQSIRAWVGMADSYRELSKWEQASEAYTELSL 442
                 689************************************99887766 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 0.00042
      TPR_19  12 alleqalqedpknaearllLAeallalgqldeAealLdalpeedpdda 59 
                 ++++++   +p n++++++L  +ll++ q + A+a+  ++ e +p+d 
  CCG91769.1 435 EAYTELSLLEPTNGAVWYNLGLVLLKMEQEKFARACFMRVIELNPKDR 482
                 5677777789***********************************975 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.11
      TPR_19   9 eAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                  A++++++a   dp+ +  + +L  ++ +l  + eA+++  ++ ++ p
  CCG91769.1 500 VAMDAYKKAVNLDPDFGIGWFNLGCLYQELHLYPEAIEAWRKAEKSLP 547
                 6999********************************998776666665 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       8.3   8.8e+03      16      32 ..     260     276 ..     254     276 .. 0.69
   2 !   14.7   0.0   3.5e-05     0.037       5      32 ..     351     378 ..     348     379 .. 0.91
   3 !   11.0   0.0   0.00053      0.56       5      33 .]     385     413 ..     381     413 .. 0.89
   4 !   10.4   0.0   0.00081      0.86       2      26 ..     416     440 ..     415     447 .. 0.88
   5 ?    5.5   0.0      0.03        32       2      32 ..     450     480 ..     449     481 .. 0.89
   6 ?    1.6   0.0      0.53   5.5e+02      10      32 ..     492     514 ..     483     514 .. 0.75
   7 ?    3.2   0.0      0.16   1.7e+02       4      28 ..     520     544 ..     518     549 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 8.3
                 HHHHHHHHHHHHHH-TT CS
       TPR_6  16 tdkAlealerlikeYPd 32 
                 + +  +  + li+ YP+
  CCG91769.1 260 KNEIEKSADILIQLYPK 276
                 55555666779999996 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 3.5e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYPd 32 
                  l+ +++k g+++kA+e l++ +++ P 
  CCG91769.1 351 PLGICLYKIGQYEKAVEELKSYVENRPR 378
                 599*****88****************97 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00053
                 HHHHHHHH.HHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   5 klalsyrk.lgdtdkAlealerlikeYPdS 33 
                 ++++ y+k    +++A+ a+ +  +  P+S
  CCG91769.1 385 LMGEIYQKmH-HWEQAISAFTKAARLNPQS 413
                 79******55.*****************98 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00081
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerl 26 
                 A   +a syr+l ++++A ea+ +l
  CCG91769.1 416 AWVGMADSYRELSKWEQASEAYTEL 440
                 67789******99*********988 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPd 32 
                 + y+l+l ++k+ +   A++ + r+i+  P+
  CCG91769.1 450 VWYNLGLVLLKMEQEKFARACFMRVIELNPK 480
                 57*********878888**********9997 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6  10 yrklgdtdkAlealerlikeYPd 32 
                  +++g+   A++a+++ ++  Pd
  CCG91769.1 492 SQRAGERLVAMDAYKKAVNLDPD 514
                 344457778**********9997 PP

  == domain 7  score: 3.2 bits;  conditional E-value: 0.16
                 HHHHHHHHH.HHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrk.lgdtdkAlealerlik 28 
                 ++l+ +y++    + +A+ea+++  k
  CCG91769.1 520 FNLGCLYQElH-LYPEAIEAWRKAEK 544
                 89*******66.9********99765 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   5.3e-05     0.056       4      65 ..     319     377 ..     316     380 .. 0.91
   2 !   10.7   0.0   0.00061      0.65       3      43 ..     386     423 ..     384     424 .. 0.89
   3 !   14.0   0.0   5.9e-05     0.062       3      45 ..     420     459 ..     418     469 .. 0.93
   4 ?    4.0   0.0     0.077        81       1      65 [.     452     513 ..     452     514 .. 0.86
   5 !    6.9   0.0    0.0091       9.6       9      67 ..     494     549 ..     486     550 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.3e-05
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 a++++ ++++  A+ al +a++ +    +  e ++ lg ++++ g +++A++ +++++++ p
  CCG91769.1 319 AQILIGRKEWNPAIDALLQAREEG---ALSKEIAYPLGICLYKIGQYEKAVEELKSYVENRP 377
                 778888888888999999999999...99999**************************9998 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00061
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgda 43 
                 ++ ++ +  ++++A+ a++ a +++   P+  +A+ + +d+
  CCG91769.1 386 MGEIYQKMHHWEQAISAFTKAARLN---PQSIRAWVGMADS 423
                 68899********************...*999999887776 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 5.9e-05
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaal 45 
                 +a++++++ ++++A +a++++  +    P + + +++lg+++l
  CCG91769.1 420 MADSYRELSKWEQASEAYTELSLLE---PTNGAVWYNLGLVLL 459
                 699**********************...*************98 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.077
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 ++l++ +l+  +   A+a + ++++++   P +++ +++ g++  r+g+   A ++y++a+  +p
  CCG91769.1 452 YNLGLVLLKMEQEKFARACFMRVIELN---PKDRDGWFNFGVLSQRAGERLVAMDAYKKAVNLDP 513
                 5677777777777779999********...9999****************999999999987776 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.0091
      TPR_16   9 ragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 rag+   A  a++ a+ +d   Pd    +++lg ++ ++  ++eA+++ r+a +  p++
  CCG91769.1 494 RAGERLVAMDAYKKAVNLD---PDFGIGWFNLGCLYQELHLYPEAIEAWRKAEKSLPGD 549
                 5666667888999999999...9999999999999999999999998888887887776 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0    0.0002      0.21      36      60 ..     353     377 ..     349     379 .. 0.93
   2 !   12.7   0.0    0.0001      0.11      26      63 ..     377     414 ..     375     418 .. 0.93
   3 !   14.4   0.0   3.1e-05     0.032       5      64 ..     424     483 ..     421     483 .. 0.94
   4 !   14.3   0.0   3.3e-05     0.035      14      61 ..     467     514 ..     463     517 .. 0.95
   5 ?    1.2   0.0      0.38     4e+02       8      50 ..     495     537 ..     492     541 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
       TPR_9  36 GlllaqlGclsaAladLeaylalap 60 
                 G++l++ G++++A+++L  y+++ p
  CCG91769.1 353 GICLYKIGQYEKAVEELKSYVENRP 377
                 99********************998 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.0001
       TPR_9  26 PddpeerrdRGlllaqlGclsaAladLeaylalapdap 63 
                 P++++ +   G +++++ ++++A+ ++  +++l+p+  
  CCG91769.1 377 PRHVSAWILMGEIYQKMHHWEQAISAFTKAARLNPQSI 414
                 99*********************************875 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 3.1e-05
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 + +  +we+a +++  l ll P     ++  Gl+l ++++ + A+a++ + ++l+p+++d
  CCG91769.1 424 YRELSKWEQASEAYTELSLLEPTNGAVWYNLGLVLLKMEQEKFARACFMRVIELNPKDRD 483
                 666789**************************************************9876 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 3.3e-05
       TPR_9  14 alavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                 a a+  r++ l+P+d + ++  G+l ++ G   +A+++   ++ l+pd
  CCG91769.1 467 ARACFMRVIELNPKDRDGWFNFGVLSQRAGERLVAMDAYKKAVNLDPD 514
                 67899****************************************997 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.38
       TPR_9   8 eedweralavverllllaPddpeerrdRGlllaqlGclsaAla 50 
                 + +  +a+ ++   + l+Pd    ++  G l+++l  + +A++
  CCG91769.1 495 AGERLVAMDAYKKAVNLDPDFGIGWFNLGCLYQELHLYPEAIE 537
                 5566678888888888999999999999999999988888876 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2       1.5   1.6e+03       3      28 ..     280     305 ..     261     312 .. 0.63
   2 ?   -2.1   0.0       9.9     1e+04       8      30 ..     319     341 ..     317     352 .. 0.76
   3 !   13.1   0.0   0.00013      0.14      10      43 ..     355     388 ..     347     389 .. 0.89
   4 !   15.0   0.0   3.1e-05     0.033       3      43 ..     382     422 ..     382     423 .. 0.96
   5 !   10.0   0.0    0.0012       1.3       2      42 ..     415     455 ..     414     457 .. 0.95
   6 ?    5.3   0.0      0.04        42       3      40 ..     450     487 ..     449     493 .. 0.84
   7 ?    2.5   0.0      0.32   3.4e+02      14      41 ..     495     522 ..     489     523 .. 0.82
   8 ?    0.9   0.0         1   1.1e+03      14      42 ..     529     557 ..     525     559 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.5
      TPR_14   3 allalaeallalGdpdeAiallrral 28 
                 a++a+ + +l+l  +d+A  ++r+a+
  CCG91769.1 280 AWAAASANYLRLSLWDKADFAARKAI 305
                 45555555666666666666666665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 9.9
      TPR_14   8 aeallalGdpdeAiallrralal 30 
                 a++l  + ++  Ai++l +a + 
  CCG91769.1 319 AQILIGRKEWNPAIDALLQAREE 341
                 66777788888899999888665 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 0.00013
      TPR_14  10 allalGdpdeAiallrralalaPddaeawlllaq 43 
                  l+  G++++A++ l+ +++  P +  aw+l+++
  CCG91769.1 355 CLYKIGQYEKAVEELKSYVENRPRHVSAWILMGE 388
                 56777***************************98 PP

  == domain 4  score: 15.0 bits;  conditional E-value: 3.1e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 a+ +++e++     +++Ai ++ +a +l+P++ +aw  +a+
  CCG91769.1 382 AWILMGEIYQKMHHWEQAISAFTKAARLNPQSIRAWVGMAD 422
                 79999********************************9996 PP

  == domain 5  score: 10.0 bits;  conditional E-value: 0.0012
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 +a+  +a+ +++l ++++A +++ ++  l P++ ++w+ l+
  CCG91769.1 415 RAWVGMADSYRELSKWEQASEAYTELSLLEPTNGAVWYNLG 455
                 7999**********************99*********9997 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.04
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawll 40 
                 +++ l+ +ll  ++ + A+a++ r+++l+P+d++ w+ 
  CCG91769.1 450 VWYNLGLVLLKMEQEKFARACFMRVIELNPKDRDGWFN 487
                 5788888888888888899**************99986 PP

  == domain 7  score: 2.5 bits;  conditional E-value: 0.32
      TPR_14  14 lGdpdeAiallrralalaPddaeawlll 41 
                 +G+   A++++++a+ l+Pd+   w+ l
  CCG91769.1 495 AGERLVAMDAYKKAVNLDPDFGIGWFNL 522
                 5555569*************98888877 PP

  == domain 8  score: 0.9 bits;  conditional E-value: 1
      TPR_14  14 lGdpdeAiallrralalaPddaeawllla 42 
                 l  + eAi++ r+a +  P+d + ++ l+
  CCG91769.1 529 LHLYPEAIEAWRKAEKSLPGDIRPLINLV 557
                 5567799*******999999988777776 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0026       2.7      49      74 ..     350     375 ..     331     378 .. 0.74
   2 !   18.7   0.1   1.5e-06    0.0015       8      74 ..     351     409 ..     345     412 .. 0.85
   3 !   19.8   0.2   6.8e-07   0.00071       5      70 ..     382     439 ..     378     441 .. 0.88
   4 !    8.6   0.0    0.0021       2.2       5      33 ..     450     478 ..     447     514 .. 0.68
   5 ?    4.1   0.0     0.055        58      49      71 ..     520     542 ..     518     547 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0026
      TPR_12  49 rnLgrlyralgryeeAlelleealai 74 
                 + Lg+++++ g+ye+A+e l+  ++ 
  CCG91769.1 350 YPLGICLYKIGQYEKAVEELKSYVEN 375
                 55888999999999998888877665 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.5e-06
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                  l+ +l++ g+y++A e l+  +e +     p h   +++ + +g++y+++ ++e+A++++++a ++
  CCG91769.1 351 PLGICLYKIGQYEKAVEELKSYVENR-----PRH---VSAWILMGEIYQKMHHWEQAISAFTKAARL 409
                 69999999999999999988876555.....655...99*************************887 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 6.8e-07
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlellee 70 
                 a+  ++++++++  +++A++ + ka ++      p+    +++  ++++ yr+l ++e+A e+++e
  CCG91769.1 382 AWILMGEIYQKMHHWEQAISAFTKAARLN-----PQ---SIRAWVGMADSYRELSKWEQASEAYTE 439
                 5667*********************4444.....65...69*********************9987 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0021
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleia 33 
                 +++nl++vl+++++   A++++ +++e+ 
  CCG91769.1 450 VWYNLGLVLLKMEQEKFARACFMRVIELN 478
                 6789******************9999986 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.055
      TPR_12  49 rnLgrlyralgryeeAlelleea 71 
                 +nLg ly++l  y eA+e+ ++a
  CCG91769.1 520 FNLGCLYQELHLYPEAIEAWRKA 542
                 58888888888888888876655 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.16   1.7e+02       5      24 ..     352     371 ..     352     381 .. 0.74
   2 !   13.8   0.0   4.3e-05     0.045       1      33 [.     382     412 ..     382     415 .. 0.85
   3 !   10.3   0.0   0.00056       0.6       1      24 [.     416     439 ..     416     449 .. 0.84
   4 ?    3.6   0.0     0.074        78       2      20 ..     519     537 ..     519     549 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.16
       TPR_7   5 LarlysrlGdyeeAielyeq 24 
                 L+ +  + G+ye+A+e ++ 
  CCG91769.1 352 LGICLYKIGQYEKAVEELKS 371
                 56677789*******97665 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 4.3e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdpe 33 
                 a+  ++++y+++ ++e+Ai+ +++  a +  p+
  CCG91769.1 382 AWILMGEIYQKMHHWEQAISAFTK--AARLNPQ 412
                 56789*******************..7776665 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00056
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 a++ +a+ y++l ++e+A e y++
  CCG91769.1 416 AWVGMADSYRELSKWEQASEAYTE 439
                 57789*****************99 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.074
       TPR_7   2 LlnLarlysrlGdyeeAie 20 
                 ++nL+ ly++l  y eAie
  CCG91769.1 519 WFNLGCLYQELHLYPEAIE 537
                 58***************98 PP

>> SRP_TPR_like  Putative TPR-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.62   6.6e+02      68     103 ..     305     340 ..     285     342 .. 0.78
   2 ?   13.2   0.0   6.7e-05      0.07      32      85 ..     333     385 ..     322     415 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.62
  SRP_TPR_like  68 lkkveaee.kvkvlksqvlYrlgsyekAYklLskekk 103
                   +  +++++ +  vl +q+l   ++++ A + L +  +
    CCG91769.1 305 I-AMNSSDyHYPVLFAQILIGRKEWNPAIDALLQARE 340
                   3.3555665999**************99999877655 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 6.7e-05
  SRP_TPR_like  32 eaLkllkkgsalsedvrfEkaYvlYklkkykkalkilkkveaeekvkvlksqvl 85 
                   +aL  +++++als+++ +     lYk+ +y+ka++ lk+  ++ + +++ + +l
    CCG91769.1 333 DALLQAREEGALSKEIAYPLGICLYKIGQYEKAVEELKSYVEN-RPRHVSAWIL 385
                   8999999999***************************998776.5665555443 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.6     0.014        15     147     246 ..     279     378 ..     236     383 .. 0.80
   2 ?    7.4   0.4     0.002       2.2     149     216 ..     383     450 ..     378     483 .. 0.56
   3 ?    3.7   0.0     0.028        29     149     178 ..     485     514 ..     471     516 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.014
      TPR_15 147 afllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkara...esdasLwgplaaAlllLgrpkkALeylrkqak 242
                   ++a ++ y++ + +d+A  ++r+A+a++   s+     l++ i  gr++   +++ a+ ++    + ++++  pl+  l ++g+++kA e l+ + +
  CCG91769.1 279 VAWAAASANYLRLSLWDKADFAARKAIAMNS--SDYHYPVLFAQILIGRKE-WNPAIDALLQAReegALSKEIAYPLGICLYKIGQYEKAVEELKSYVE 374
                 5799999999999999999999999998765..577778888877666444.67777777766656688899999999999999999999998888877 PP

      TPR_15 243 enrk 246
                 ++++
  CCG91769.1 375 NRPR 378
                 7665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.002
      TPR_15 149 llaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkaraesdasL 216
                 +++++e+y++  ++++A+ ++ +A +l+p+s  +  ++   + +l++ +++ e+  ++   + ++ + 
  CCG91769.1 383 WILMGEIYQKMHHWEQAISAFTKAARLNPQSIRAWVGMADSYRELSKWEQASEAYTELSLLEPTNGAV 450
                 66777777777777777777777777777755554444444444444444444444444444444444 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.028
      TPR_15 149 llaraelyrqegqtdaAlrdyreAlalapd 178
                 ++  + l +++g+   A+ +y++A++l+pd
  CCG91769.1 485 WFNFGVLSQRAGERLVAMDAYKKAVNLDPD 514
                 777778899*******************98 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0016       1.7     244     289 ..     356     401 ..     298     405 .. 0.78
   2 ?    6.3   0.2    0.0038       4.1     224     287 ..     370     433 ..     364     440 .. 0.63
   3 ?   -1.9   0.0       1.2   1.3e+03     244     273 ..     458     487 ..     456     493 .. 0.91
   4 ?   -1.0   0.0      0.66     7e+02     250     282 ..     498     530 ..     487     538 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0016
                 HHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHH CS
       ChAPs 244 llskkkeelAlevakravksaPsefktWalLvkvYikledienALl 289
                 l +  ++e A+e  k+ v+  P   + W+l+ ++Y k++ +e+A+ 
  CCG91769.1 356 LYKIGQYEKAVEELKSYVENRPRHVSAWILMGEIYQKMHHWEQAIS 401
                 5666788999999999****************************86 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0038
                 HHHH-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHH CS
       ChAPs 224 neeleeeekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkvYikledienA 287
                 ++ +e++++ ++  +l  e  ++ ++ e A+++ ++a ++ P   + W+ ++++Y +l  +e+A
  CCG91769.1 370 KSYVENRPRHVSAWILMGEIYQKMHHWEQAISAFTKAARLNPQSIRAWVGMADSYRELSKWEQA 433
                 4455555555555555555555555666777777777777777777777777777777777776 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.2
                 HHHSS--HHHHHHHHHHHHH-TT-HHHHHH CS
       ChAPs 244 llskkkeelAlevakravksaPsefktWal 273
                 ll+ ++e++A ++ +r +++ P +   W+ 
  CCG91769.1 458 LLKMEQEKFARACFMRVIELNPKDRDGWFN 487
                 7889999******************99986 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.66
                 -HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT CS
       ChAPs 250 eelAlevakravksaPsefktWalLvkvYikle 282
                   +A+++ k+av++ P     W+ L   Y +l+
  CCG91769.1 498 RLVAMDAYKKAVNLDPDFGIGWFNLGCLYQELH 530
                 46799999*********99******99998876 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00013      0.14       2      48 ..     347     393 ..     346     397 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHHHHT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH CS
  Fis1_TPR_C   2 eclYylAlGhyklgeYseArryvdalLeiEPenrQaqsLkeliedki 48 
                 e  Y l +  yk+g+Y++A + ++   e  P+   a  L   i +k+
  CCG91769.1 347 EIAYPLGICLYKIGQYEKAVEELKSYVENRPRHVSAWILMGEIYQKM 393
                 78899********************9999999888877777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 3644.64
//
Query:       CCG91770.1  [L=189]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1434.85
//
Query:       CCG91771.1  [L=358]
Description: Outer membrane protein or related peptidoglycan-associated (Lipo)protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-14   53.6   0.0    3.8e-14   52.8   0.0    1.4  1  OmpA      OmpA family


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   2.1e-18   3.8e-14       1      95 []     249     346 ..     249     346 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 2.1e-18
                 .B-TTS--B-GGGHHHHHHHHHHHHS-S--.EEEEE---S---HHHHHHHHHHHHHHHHHHHHH.TTSSGGGEEEEE-TT-----------.---EE. CS
        OmpA   1 yFapgsseLtpkaksaldkiaellkkpeqk.itveGhtdaagseernweLSqkRAeaVanylqn.egvppsrisvsgyGaerpitanntae.kkarnr 95 
                 +F+++s+++++ a+  l ++ e+lkk+++  +++ Ghtd+ g++ +n +LS++RA aV+++l +       +++ +gyG+++pi + ++   ++a+nr
  CCG91771.1 249 LFDFDSANIKADAEPLLFQVLEILKKYHRAdVEIGGHTDTFGDNMYNLQLSEQRAFAVQQWLEAhLPAGMYNFHSTGYGKSHPIVNPRGSIeEQAKNR 346
                 5************************555446*******************************9955555669999********987765543777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2691.18
//
Query:       CCG91772.1  [L=786]
Description: TPR repeats containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-37  128.0  21.1    3.8e-07   30.7   0.8   10.6 11  TPR_16           Tetratricopeptide repeat
    2.2e-33  111.7  53.0       0.03   14.4   0.0   16.1 16  TPR_2            Tetratricopeptide repeat
    4.5e-28   96.0  50.7    8.1e-05   23.0   0.0   16.5 15  TPR_6            Tetratricopeptide repeat
    9.2e-28   96.6  33.3    1.1e-05   25.8   0.0   10.9 12  TPR_19           Tetratricopeptide repeat
    5.6e-25   87.4  30.3    4.4e-07   30.1   0.0   10.1  9  TPR_12           Tetratricopeptide repeat
      1e-18   66.2  46.2      0.069   13.0   0.1   13.4 13  TPR_1            Tetratricopeptide repeat
    1.2e-17   63.1  28.5       0.11   13.4   0.1   13.8 14  TPR_14           Tetratricopeptide repeat
    2.7e-16   58.3  44.2      0.025   14.8   0.1   13.6 13  TPR_8            Tetratricopeptide repeat
    2.5e-14   53.4  20.1    0.00073   19.3   0.5    5.9  7  TPR_21           Tetratricopeptide repeat-like domain
    5.4e-14   52.4  33.1    2.3e-05   24.2   7.1    6.7  5  YfiO             Outer membrane lipoprotein
    6.8e-14   51.9  31.9      0.013   15.7   0.1    9.0 11  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    3.6e-13   48.5  19.0       0.28   11.3   0.1   11.0 11  TPR_7            Tetratricopeptide repeat
    1.4e-08   34.8   1.9        0.8    9.9   0.0    6.1  5  TPR_9            Tetratricopeptide repeat
    1.1e-06   28.7   9.7        1.4    9.8   0.1    6.4  5  TPR_4            Tetratricopeptide repeat
    1.9e-05   24.7  11.1       0.28   11.7   0.1    8.5  8  TPR_17           Tetratricopeptide repeat
    8.9e-05   22.5  13.8        0.8    9.8   0.0    7.1  8  Fis1_TPR_C       Fis1 C-terminal tetratricopeptide repeat
    0.00012   22.2   1.4    0.00012   22.2   1.4    5.7  8  TPR_18           Tetratricopeptide repeat
    0.00087   18.8  12.2        0.2   11.0   1.0    5.5  6  TPR_MalT         MalT-like TPR region
     0.0017   18.2   1.3       0.18   11.6   0.2    3.7  3  ATP13            Mitochondrial ATPase expression
     0.0018   18.6  14.0        4.8    7.6   0.0    6.5  7  TPR_20           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.023   14.5  24.3       0.61   10.0   0.1    9.3 10  TPR_10           Tetratricopeptide repeat
      0.026   14.0  18.9       0.13   11.8   0.1    6.7  8  SPO22            Meiosis protein SPO22/ZIP4 like
      0.026   14.6   1.8       0.84    9.6   0.3    2.7  2  DUF4192          Domain of unknown function (DUF4192)
      0.062   13.2   1.9         45    4.1   0.1    4.0  3  Clathrin_H_link  Clathrin-H-link
      0.093   12.8  20.2        2.8    8.0   1.4    5.6  5  SRP_TPR_like     Putative TPR-like repeat
       0.13   12.6   7.9         16    6.0   0.0    6.6  6  PPR              PPR repeat
        3.2    7.9   8.5         37    4.6   0.7    4.7  4  SLT_L            Soluble lytic murein transglycosylase L doma


Domain annotation for each model (and alignments):
>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   0.00024      0.16      34      61 ..      49      76 ..      31      84 .. 0.80
   2 !   19.1   0.1   2.2e-06    0.0015       1      67 [.      53     118 ..      53     119 .. 0.87
   3 !   26.0   0.3   1.6e-08     1e-05      11      66 ..      99     155 ..      89     157 .. 0.94
   4 !   19.9   0.6   1.3e-06   0.00084       4      50 ..     129     174 ..     128     181 .. 0.89
   5 !   16.4   0.0   1.6e-05     0.011       4      61 ..     237     294 ..     237     299 .. 0.95
   6 !    9.4   0.0    0.0025       1.7       1      64 [.     307     372 ..     307     375 .. 0.81
   7 !   20.0   0.0   1.2e-06   0.00081       3      61 ..     419     477 ..     417     487 .. 0.90
   8 ?    1.3   0.0      0.87   5.8e+02      30      67 ..     484     521 ..     479     522 .. 0.80
   9 !   12.2   0.2   0.00033      0.22       4      51 ..     532     578 ..     531     595 .. 0.90
  10 ?   -1.4   0.0         6     4e+03      36      57 ..     602     623 ..     597     632 .. 0.76
  11 !   30.7   0.8   5.7e-10   3.8e-07       2      58 ..     680     736 ..     679     740 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00024
      TPR_16 34 aeAllllgdaalrqgrlaeAa.alyraal 61
                a+  l ++ a++rqg+++eA+  +y + l
  CCG91772.1 49 ADVDLDRAIALYRQGEYEEAIkIFY-RIL 76
                777889999************5555.544 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 2.2e-06
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 l++a a++r+g+y++A++ + + l +  s P    eAl+  +d++   gr ++A+  y+ +++ +p++
  CCG91772.1  53 LDRAIALYRQGEYEEAIKIFYRILPLL-S-PGkKTEALYSMADCYRLIGRKEDAIKIYQLLVQSDPSS 118
                 689*****************5555444.3.4459***************************9999987 PP

  == domain 3  score: 26.0 bits;  conditional E-value: 1.6e-08
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal.raapd 66 
                 g+ +dA++ ++ ++ +dpss +a+ A+++ g ++ ++g++a Aa +++ al +a+p+
  CCG91772.1  99 GRKEDAIKIYQLLVQSDPSSAFAPTAYFWEGKLLSELGNFAQAAGALKIALeKADPQ 155
                 7889***********************************************777776 PP

  == domain 4  score: 19.9 bits;  conditional E-value: 1.3e-06
      TPR_16   4 araalragdyddAaaaleaalkrdpssPd.aaeAllllgdaalrqgrl 50 
                 ++++ ++g++++Aa al++al+++  +P+ a +A++ll+++ lr g+ 
  CCG91772.1 129 GKLLSELGNFAQAAGALKIALEKA--DPQtANAASFLLALCQLRIGEE 174
                 778889******************..6888*************98875 PP

  == domain 5  score: 16.4 bits;  conditional E-value: 1.6e-05
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 + aa+++g+  +A+++l++a    p +  ++ A  +l + +l q+r++eA+++y+++ 
  CCG91772.1 237 GWAAWKSGQAKEAEHYLTQASGGPPYTEWNRIANSGLFEFYLSQNRYKEAIQFYEKHK 294
                 679************************99*************************9975 PP

  == domain 6  score: 9.4 bits;  conditional E-value: 0.0025
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPd..aaeAllllgdaalrqgrlaeAa.alyraalraa 64 
                 l+l +a+++ +dy +A+ + + +l+++p+s++   a  +   ++ +l+qg l++ a +++  + + +
  CCG91772.1 307 LDLSTAYIEIKDYSKALSVIDLFLANYPKSSLvdLAVYRKIVANYYLEQGSLEKNAqQFFSQY-PSS 372
                 578899*************************9544444555566677*********9998776.554 PP

  == domain 7  score: 20.0 bits;  conditional E-value: 1.2e-06
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 +a+a + + ++ +Aa++++ +l  +p+s + ++  ++l+ ++ + g+ +eA+ + ++al
  CCG91772.1 419 RANAMYGLEKWSEAAELFKKFLTEYPKSREIVHVKMHLASVLEKGGEKKEALKYWQEAL 477
                 78888999********************************************7766766 PP

  == domain 8  score: 1.3 bits;  conditional E-value: 0.87
      TPR_16  30 sPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 +P++   l   g +a+ +++  +Aa+  ++ l ++p +
  CCG91772.1 484 DPERQSCLEQIGILAYDLKENSLAAETMQKVLSEYPHS 521
                 68888888888999999999999999999988888875 PP

  == domain 9  score: 12.2 bits;  conditional E-value: 0.00033
      TPR_16   4 araalragdyddAaaaleaalkrdpssPd..aaeAllllgdaalrqgrla 51 
                 +++ +++++y++A +++  a+++    P+    +A l l+++a++q +++
  CCG91772.1 532 GQSKYDNKEYEAAKEYFSLAREAE---PEklYLAATLMLAWIAYHQDDVE 578
                 6789*************9999999...6666***************8876 PP

  == domain 10  score: -1.4 bits;  conditional E-value: 6
      TPR_16  36 AllllgdaalrqgrlaeAaaly 57 
                  +++ +  +l++g l++A+ ++
  CCG91772.1 602 LYYWIASRLLQKGKLDLAVFYF 623
                 6788888889999999998555 PP

  == domain 11  score: 30.7 bits;  conditional E-value: 5.7e-10
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                  la   +++g+++dA++ le++l + p+   +a A++l gd +l+q+++ eAa +y 
  CCG91772.1 680 GLAETQIALGQFADAQKNLEEVLLKEPEGENNAKARMLIGDNYLAQKNYREAAKAYT 736
                 57888999******************99999**********************7775 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   0.00016       0.1       7      24 ..      55      72 ..      53      72 .. 0.90
   2 !   14.4   0.0   4.5e-05      0.03       2      33 ..      86     117 ..      85     118 .. 0.94
   3 !   12.0   0.2   0.00027      0.18       2      30 ..     123     151 ..     122     153 .. 0.92
   4 !    8.5   0.2    0.0035       2.3       2      27 ..     231     256 ..     230     257 .. 0.93
   5 !    7.6   0.8     0.007       4.6      11      26 ..     277     292 ..     275     292 .. 0.93
   6 ?    3.1   0.0      0.18   1.2e+02       4      32 ..     306     334 ..     304     336 .. 0.80
   7 !   13.8   0.1   7.1e-05     0.047       4      33 ..     416     445 ..     414     446 .. 0.92
   8 !   10.9   0.1   0.00062      0.41       6      28 ..     455     477 ..     451     477 .. 0.93
   9 ?    5.8   0.0     0.027        18       4      33 ..     491     520 ..     489     521 .. 0.92
  10 !    8.4   0.5    0.0039       2.6       8      33 ..     532     557 ..     527     558 .. 0.90
  11 ?   -0.1   0.0         2   1.3e+03       6      19 ..     566     579 ..     563     585 .. 0.87
  12 !   11.7   0.1   0.00033      0.22       2      29 ..     601     628 ..     600     631 .. 0.94
  13 ?    4.6   0.1     0.063        42       4      34 .]     641     671 ..     639     671 .. 0.90
  14 !    9.9   0.0    0.0013      0.87       4      32 ..     678     706 ..     675     707 .. 0.90
  15 !   13.8   0.5   7.3e-05     0.049       1      27 [.     712     738 ..     712     745 .. 0.85
  16 ?   -2.0   0.1       8.2   5.5e+03       4      21 ..     752     769 ..     749     781 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00016
       TPR_2  7 lGlayyklgdyeeAleaf 24
                ++ a+y++g+yeeA++ f
  CCG91772.1 55 RAIALYRQGEYEEAIKIF 72
                899************965 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.5e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 ealy ++++y+  g+ e+A++ ++  ++ dP 
  CCG91772.1  86 EALYSMADCYRLIGRKEDAIKIYQLLVQSDPS 117
                 89***********************9999996 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00027
       TPR_2   2 ealynlGlayyklgdyeeAleafekAlel 30 
                  a+++ G+++ +lg++++A+ a++ Ale 
  CCG91772.1 123 TAYFWEGKLLSELGNFAQAAGALKIALEK 151
                 69**********************99986 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0035
       TPR_2   2 ealynlGlayyklgdyeeAleafekA 27 
                 +al + G+a++k+g+ +eA++++ +A
  CCG91772.1 231 KALTRCGWAAWKSGQAKEAEHYLTQA 256
                 689999*****************998 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.007
       TPR_2  11 yyklgdyeeAleafek 26 
                 y+ +++y+eA++++ek
  CCG91772.1 277 YLSQNRYKEAIQFYEK 292
                 899***********98 PP

  == domain 6  score: 3.1 bits;  conditional E-value: 0.18
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldP 32 
                 l  l  ay++ +dy +Al   +  l+ +P
  CCG91772.1 306 LLDLSTAYIEIKDYSKALSVIDLFLANYP 334
                 5678899**********988777777666 PP

  == domain 7  score: 13.8 bits;  conditional E-value: 7.1e-05
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 l  +++a y l ++ eA+e+f+k l  +P+
  CCG91772.1 416 LLGRANAMYGLEKWSEAAELFKKFLTEYPK 445
                 6789*********************99997 PP

  == domain 8  score: 10.9 bits;  conditional E-value: 0.00062
       TPR_2   6 nlGlayyklgdyeeAleafekAl 28 
                  l+ +++k g+ +eAl+++++Al
  CCG91772.1 455 HLASVLEKGGEKKEALKYWQEAL 477
                 68999*****************8 PP

  == domain 9  score: 5.8 bits;  conditional E-value: 0.027
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 l ++G ++y l++   A+e ++k+l+ +P+
  CCG91772.1 491 LEQIGILAYDLKENSLAAETMQKVLSEYPH 520
                 6689************************97 PP

  == domain 10  score: 8.4 bits;  conditional E-value: 0.0039
       TPR_2   8 GlayyklgdyeeAleafekAleldPn 33 
                 G++ y +++ye A+e+f  A e +P+
  CCG91772.1 532 GQSKYDNKEYEAAKEYFSLAREAEPE 557
                 88889***************999986 PP

  == domain 11  score: -0.1 bits;  conditional E-value: 2
       TPR_2   6 nlGlayyklgdyee 19 
                 +l++++y+++d e+
  CCG91772.1 566 MLAWIAYHQDDVEK 579
                 69*********997 PP

  == domain 12  score: 11.7 bits;  conditional E-value: 0.00033
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                 e++y+++  ++++g+++ A+ +f+k+++
  CCG91772.1 601 ELYYWIASRLLQKGKLDLAVFYFKKVIQ 628
                 78***********************997 PP

  == domain 13  score: 4.6 bits;  conditional E-value: 0.063
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                 l++l++  +kl +++eA  ++ +  + dP+n
  CCG91772.1 641 LWQLAETERKLMNWKEANTYYLEFQKADPQN 671
                 678889999999*****************97 PP

  == domain 14  score: 9.9 bits;  conditional E-value: 0.0013
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldP 32 
                 l  l++  ++lg++++A + +e++l  +P
  CCG91772.1 678 LLGLAETQIALGQFADAQKNLEEVLLKEP 706
                 678999*******************9988 PP

  == domain 15  score: 13.8 bits;  conditional E-value: 7.3e-05
       TPR_2   1 aealynlGlayyklgdyeeAleafekA 27 
                 a+a + +G+ y+++++y eA++a+   
  CCG91772.1 712 AKARMLIGDNYLAQKNYREAAKAYTTL 738
                 5677899*****************865 PP

  == domain 16  score: -2.0 bits;  conditional E-value: 8.2
       TPR_2   4 lynlGlayyklgdyeeAl 21 
                     + +  k+gd ++A+
  CCG91772.1 752 MQKAAFSFSKAGDNDQAA 769
                 555677777888888886 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0078       5.2       6      26 ..      55      75 ..      50      76 .. 0.85
   2 !   23.0   0.0   1.2e-07   8.1e-05       1      33 []      86     118 ..      86     118 .. 0.96
   3 ?    5.8   0.1     0.036        24       2      29 ..     124     151 ..     123     156 .. 0.89
   4 ?    3.1   0.0      0.28   1.8e+02       2      28 ..     160     186 ..     159     190 .. 0.79
   5 ?    1.2   0.1       1.1   7.1e+02      10      25 ..     277     292 ..     275     292 .. 0.88
   6 !   10.4   0.0    0.0013      0.87       3      33 .]     306     336 ..     305     336 .. 0.92
   7 !   18.2   0.1   4.2e-06    0.0028       3      33 .]     416     446 ..     414     446 .. 0.94
   8 ?    3.7   0.0      0.18   1.2e+02       5      26 ..     455     476 ..     452     479 .. 0.88
   9 !   12.7   0.0   0.00024      0.16       5      33 .]     493     521 ..     490     521 .. 0.90
  10 ?    3.6   0.1      0.18   1.2e+02       3      28 ..     528     553 ..     526     557 .. 0.80
  11 ?    5.2   0.3     0.057        38       3      28 ..     603     628 ..     601     631 .. 0.83
  12 ?    6.5   0.1     0.022        14       2      32 ..     640     670 ..     639     671 .. 0.92
  13 !    9.1   0.0    0.0033       2.2       2      31 ..     677     706 ..     676     707 .. 0.92
  14 !    8.2   0.7    0.0066       4.4       2      26 ..     714     738 ..     713     744 .. 0.89
  15 ?    1.0   0.2       1.2   8.1e+02       2      20 ..     751     769 ..     750     781 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0078
                HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  6 lalsyrklgdtdkAlealerl 26
                +a +++++g++++A++++ r+
  CCG91772.1 55 RAIALYRQGEYEEAIKIFYRI 75
                7999************99776 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlikeYPdS 33 
                 +Aly +a +yr  g++++A+++++ l+++ P S
  CCG91772.1  86 EALYSMADCYRLIGRKEDAIKIYQLLVQSDPSS 118
                 7***********88*****************88 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlike 29 
                 A+++ ++++ +lg+ ++A  al+  +++
  CCG91772.1 124 AYFWEGKLLSELGNFAQAAGALKIALEK 151
                 99*********99*********988887 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlik 28 
                 A ++lal++++ g+ +k +  l++l++
  CCG91772.1 160 ASFLLALCQLRIGEEEKGVCRLRELVE 186
                 789********8899988766666666 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealer 25 
                 y++++++ +A++ +e+
  CCG91772.1 277 YLSQNRYKEAIQFYEK 292
                 67799*********96 PP

  == domain 6  score: 10.4 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYPdS 33 
                 l+ l  +y++ +d++kAl   + ++ +YP+S
  CCG91772.1 306 LLDLSTAYIEIKDYSKALSVIDLFLANYPKS 336
                 5668899***88*****************98 PP

  == domain 7  score: 18.2 bits;  conditional E-value: 4.2e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYPdS 33 
                 l+ +a +++ l ++++A e+++++++eYP+S
  CCG91772.1 416 LLGRANAMYGLEKWSEAAELFKKFLTEYPKS 446
                 789999***978*****************98 PP

  == domain 8  score: 3.7 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerl 26 
                 +la  ++k+g++ +Al+++++ 
  CCG91772.1 455 HLASVLEKGGEKKEALKYWQEA 476
                 6899999*99*********986 PP

  == domain 9  score: 12.7 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYPdS 33 
                 +++ + + l++ + A e+++++++eYP S
  CCG91772.1 493 QIGILAYDLKENSLAAETMQKVLSEYPHS 521
                 6888888888*****************98 PP

  == domain 10  score: 3.6 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlik 28 
                  +  ++s +  +++++A+e++   ++
  CCG91772.1 528 AWIVGQSKYDNKEYEAAKEYFSLARE 553
                 56789999*989********986665 PP

  == domain 11  score: 5.2 bits;  conditional E-value: 0.057
                 HHHHH.HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lykla.lsyrklgdtdkAlealerlik 28 
                 +y++a ++++k+ + d A+ +++++i+
  CCG91772.1 603 YYWIAsRLLQKG-KLDLAVFYFKKVIQ 628
                 799996666666.************98 PP

  == domain 12  score: 6.5 bits;  conditional E-value: 0.022
                 HHHHHHHHHHH.HHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 Alyklalsyrk.lgdtdkAlealerlikeYPd 32 
                 +l++la+  rk + ++ +A +++ ++ k  P+
  CCG91772.1 640 SLWQLAETERKlM-NWKEANTYYLEFQKADPQ 670
                 69*********99.*********999998886 PP

  == domain 13  score: 9.1 bits;  conditional E-value: 0.0033
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYP 31 
                 +l+ la+ +++lg+ ++A + le+++ + P
  CCG91772.1 677 VLLGLAETQIALGQFADAQKNLEEVLLKEP 706
                 699********9*************98877 PP

  == domain 14  score: 8.2 bits;  conditional E-value: 0.0066
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerl 26 
                 A ++++  y++++++++A +a+  l
  CCG91772.1 714 ARMLIGDNYLAQKNYREAAKAYTTL 738
                 7899******************987 PP

  == domain 15  score: 1.0 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAl 20 
                 A+ k+a s+ k+gd d+A 
  CCG91772.1 751 AMQKAAFSFSKAGDNDQAA 769
                 7789999999999999995 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0012      0.81      25      51 ..      49      75 ..      48      78 .. 0.85
   2 !   25.8   0.0   1.7e-08   1.1e-05       1      59 [.      59     118 ..      59     122 .. 0.92
   3 !    9.0   2.2     0.003         2       4      57 ..     135     190 ..     132     200 .. 0.78
   4 !   13.7   0.0    0.0001     0.067       2      48 ..     241     290 ..     240     296 .. 0.78
   5 !   17.6   0.1   6.2e-06    0.0041       2      61 ..     278     339 ..     277     349 .. 0.88
   6 ?    5.8   0.0      0.03        20      24      58 ..     412     446 ..     390     454 .. 0.75
   7 !    8.2   0.0    0.0052       3.5       7      47 ..     429     472 ..     423     494 .. 0.81
   8 ?    1.9   0.1      0.49   3.3e+02      21      66 ..     484     528 ..     468     530 .. 0.66
   9 ?    7.1   0.6     0.012       7.8       2      42 ..     536     578 ..     535     580 .. 0.86
  10 ?    2.8   0.1      0.26   1.7e+02       1      48 [.     610     661 ..     610     673 .. 0.69
  11 !   23.1   0.4   1.2e-07   7.8e-05      16      57 ..     666     707 ..     661     710 .. 0.86
  12 !   17.5   2.8   6.7e-06    0.0044       8      58 ..     692     745 ..     692     754 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0012
      TPR_19 25 aearllLAeallalgqldeAealLdal 51
                a++ l+ A+al+ +g+++eA+++  ++
  CCG91772.1 49 ADVDLDRAIALYRQGEYEEAIKIFYRI 75
                5778899**************998666 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 1.7e-08
      TPR_19   1 llaegdyaeAlalleqal.qedpk.naearllLAeallalgqldeAealLdalpeedpdda 59 
                 l+ +g y+eA++++ ++l   +p+   ea++ +A+++   g+ ++A+++ + l ++dp  +
  CCG91772.1  59 LYRQGEYEEAIKIFYRILpLLSPGkKTEALYSMADCYRLIGRKEDAIKIYQLLVQSDPS-S 118
                 678*************986779999*******************************998.4 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.003
      TPR_19   4 egdyaeAlalleqalqe.dpknaearl.lLAeallalgqldeAealLdalpeedpd 57 
                  g++a+A+ +l+ al++ dp+ a+a+  lLA ++l  g+ ++    L +l e+ +d
  CCG91772.1 135 LGNFAQAAGALKIALEKaDPQTANAASfLLALCQLRIGEEEKGVCRLRELVEKSAD 190
                 599***********96669*9555555469*********99988777777777776 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 0.0001
      TPR_19   2 laegdyaeAlalleqalqedpknaearl....lLAeallalgqldeAealL 48 
                 +++g+  eA  +l+qa +  p + e       +L e +l++++++eA++  
  CCG91772.1 241 WKSGQAKEAEHYLTQA-SGGPPYTEWNRiansGLFEFYLSQNRYKEAIQFY 290
                 689************9.444444444444555***************9976 PP

  == domain 5  score: 17.6 bits;  conditional E-value: 6.2e-06
      TPR_19   2 laegdyaeAlalleqalqe...dpknaearllLAeallalgqldeAealLdalpeedpddary 61 
                 l +++y eA++++e+  ++   +++ ++++l+L  a+++ +++ +A  ++d  ++ +p+++ +
  CCG91772.1 278 LSQNRYKEAIQFYEK-HKDgfiENQKENILLDLSTAYIEIKDYSKALSVIDLFLANYPKSSLV 339
                 7799***********.45557799***************************999999996655 PP

  == domain 6  score: 5.8 bits;  conditional E-value: 0.03
      TPR_19  24 naearllLAeallalgqldeAealLdalpeedpdd 58 
                  ++++l+ A+a++ l  + eA +l ++ + e+p++
  CCG91772.1 412 KEAILLGRANAMYGLEKWSEAAELFKKFLTEYPKS 446
                 67888999999999999999999999988888885 PP

  == domain 7  score: 8.2 bits;  conditional E-value: 0.0052
      TPR_19   7 yaeAlalleqalqedpk...naearllLAeallalgqldeAeal 47 
                   eA++l+++ l+e+pk      +++ LA +l + g+ +eA + 
  CCG91772.1 429 WSEAAELFKKFLTEYPKsreIVHVKMHLASVLEKGGEKKEALKY 472
                 679**************55545556699*************875 PP

  == domain 8  score: 1.9 bits;  conditional E-value: 0.49
      TPR_19  21 dpknaearllLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                 dp+ +  + +  ++ + l++   A +++++++ e+p  + y+++ A
  CCG91772.1 484 DPERQSCLEQIGILAYDLKENSLAAETMQKVLSEYPH-SSYRGVAA 528
                 5665555556667777777778888888888888887.77776655 PP

  == domain 9  score: 7.1 bits;  conditional E-value: 0.012
      TPR_19   2 laegdyaeAlalleqalqedpk..naearllLAeallalgqld 42 
                 ++++ y++A ++++ a +++p+  +++a l LA + + + +++
  CCG91772.1 536 YDNKEYEAAKEYFSLAREAEPEklYLAATLMLAWIAYHQDDVE 578
                 57899*****************888888888899888888876 PP

  == domain 10  score: 2.8 bits;  conditional E-value: 0.26
      TPR_19   1 llaegdyaeAlalleqalqe..dpk..naearllLAeallalgqldeAealL 48 
                 ll+ g+++ A+ ++++++q   + +  +   + +LAe   +l +++eA    
  CCG91772.1 610 LLQKGKLDLAVFYFKKVIQTaqSKEkyYISSLWQLAETERKLMNWKEANTYY 661
                 7999************886633222335555558888888888888886655 PP

  == domain 11  score: 23.1 bits;  conditional E-value: 1.2e-07
      TPR_19  16 qalqedpk...naearllLAeallalgqldeAealLdalpeedpd 57 
                 +a   dp+   n+ ++l+LAe ++algq+++A++ L+++++++p 
  CCG91772.1 666 KA---DPQnasNSPVLLGLAETQIALGQFADAQKNLEEVLLKEPE 707
                 55...455555*****************************99985 PP

  == domain 12  score: 17.5 bits;  conditional E-value: 6.7e-06
      TPR_19   8 aeAlalleqalqedpk...naearllLAeallalgqldeAealLdalpeedpdd 58 
                 a+A++ le++l ++p+   na ar+l  + +la++++ eA ++  +l + ++dd
  CCG91772.1 692 ADAQKNLEEVLLKEPEgenNAKARMLIGDNYLAQKNYREAAKAYTTLSLIYQDD 745
                 68***********999999*********************************97 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   6.6e-10   4.4e-07       4      69 ..      50     109 ..      47     117 .. 0.89
   2 ?   -0.1   0.1       1.7   1.1e+03      52      72 ..     129     149 ..     121     152 .. 0.71
   3 !    8.9   0.1    0.0028       1.9      44      71 ..     229     256 ..     189     257 .. 0.83
   4 !   11.6   0.1   0.00041      0.27       9      66 ..     273     324 ..     267     331 .. 0.85
   5 ?    4.1   0.0     0.086        57      10      70 ..     383     438 ..     375     441 .. 0.73
   6 !    9.0   0.0    0.0026       1.7       7      72 ..     454     515 ..     448     516 .. 0.85
   7 ?    4.3   0.2     0.076        50       9      58 ..     531     574 ..     525     592 .. 0.77
   8 !   12.5   0.2   0.00021      0.14       6      69 ..     603     662 ..     600     670 .. 0.91
   9 !   18.8   1.8   2.2e-06    0.0014       6      69 ..     678     736 ..     671     744 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 6.6e-10
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                  +   +a +l+r+g+y+eA++++ + l +   ++G++     ++l+ ++++yr+ gr e+A+++++
  CCG91772.1  50 DVDLDRAIALYRQGEYEEAIKIFYRILPLL--SPGKK----TEALYSMADCYRLIGRKEDAIKIYQ 109
                 5666799***********************..66665....589********************98 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.7
      TPR_12  52 grlyralgryeeAlelleeal 72 
                 g l+++lg++++A  +l+ al
  CCG91772.1 129 GKLLSELGNFAQAAGALKIAL 149
                 777888888888876666554 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0028
      TPR_12  44 tattlrnLgrlyralgryeeAlelleea 71 
                  + +l   g++ +++g+ +eA+ +l++a
  CCG91772.1 229 KSKALTRCGWAAWKSGQAKEAEHYLTQA 256
                 5679999*******************98 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 0.00041
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                 l ++++ + ry eA++++ek  + +  +  ++     ++l +L+++y + ++y +Al+
  CCG91772.1 273 LFEFYLSQNRYKEAIQFYEKHKDGF--I--ENQ--KENILLDLSTAYIEIKDYSKALS 324
                 5678999******************..3..444..6789****************986 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.086
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlellee 70 
                 a+  +r g+++ Al + ek   ++++l  p      ++l + + + + l+++ eA el+++
  CCG91772.1 383 AEDFNRTGKFTLALPIWEKLESAHSSLV-P----KEAILLGRANAMYGLEKWSEAAELFKK 438
                 6666777888888888888866665552.2....224788888888899999999999987 PP

  == domain 6  score: 9.0 bits;  conditional E-value: 0.0026
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                  +la+vl + g+  eAl++ ++al  ++r+     p+  ++l  +g+l + l++   A e  +++l
  CCG91772.1 454 MHLASVLEKGGEKKEALKYWQEALGSVKRT----DPERQSCLEQIGILAYDLKENSLAAETMQKVL 515
                 479************************988....4556689*******999999999988888876 PP

  == domain 7  score: 4.3 bits;  conditional E-value: 0.076
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyral 58 
                 +++  +  ++y+ A e++  a+e+      p++ l++++   L+++ + +
  CCG91772.1 531 VGQSKYDNKEYEAAKEYFSLAREAE-----PEK-LYLAATLMLAWIAYHQ 574
                 67888999*************8877.....777.4555555666666555 PP

  == domain 8  score: 12.5 bits;  conditional E-value: 0.00021
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                 ++ +a+ l++ g++d A  +++k+++ a++   +++  ++++l  L+++ r+l +++eA  ++ 
  CCG91772.1 603 YYWIASRLLQKGKLDLAVFYFKKVIQTAQSK--EKY--YISSLWQLAETERKLMNWKEANTYYL 662
                 5667888999******************999..888..9************999*****99996 PP

  == domain 9  score: 18.8 bits;  conditional E-value: 2.2e-06
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                 l  la++  +lg++++A+++le++l        p+ ++ a ++  +g+ y+a+++y+eA ++++
  CCG91772.1 678 LLGLAETQIALGQFADAQKNLEEVLLKE-----PEGENNAKARMLIGDNYLAQKNYREAAKAYT 736
                 55899*******************5555.....88888**********************9996 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1    0.0001     0.069       7      28 ..      55      76 ..      53      78 .. 0.88
   2 !   12.6   0.0   0.00014     0.092       2      26 ..      86     110 ..      85     118 .. 0.87
   3 ?    5.0   0.1     0.035        23       3      29 ..     124     150 ..     122     152 .. 0.89
   4 ?    4.8   0.1     0.039        26       2      27 ..     231     256 ..     230     256 .. 0.95
   5 !   11.5   1.0   0.00031      0.21      11      26 ..     277     292 ..     275     293 .. 0.95
   6 ?    0.6   0.1      0.88   5.9e+02      21      29 ..     316     324 ..     312     325 .. 0.72
   7 ?    3.2   0.1      0.13        88       4      32 ..     416     444 ..     414     446 .. 0.83
   8 !    8.7   0.1    0.0024       1.6       6      28 ..     455     477 ..     452     478 .. 0.92
   9 ?   -1.6   0.0       4.3   2.9e+03       7      33 ..     494     520 ..     491     521 .. 0.86
  10 ?    6.5   0.5     0.012       7.8       8      32 ..     532     556 ..     531     558 .. 0.85
  11 !    8.7   0.1    0.0024       1.6      11      29 ..     610     628 ..     601     632 .. 0.81
  12 ?    5.3   0.0     0.028        18       3      32 ..     677     706 ..     675     707 .. 0.88
  13 !    9.0   0.7    0.0019       1.2       1      25 [.     712     736 ..     712     737 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0001
                HHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1  7 lGnayfklgkydeAleyyekAL 28
                ++ a++++g+y+eA++ + + L
  CCG91772.1 55 RAIALYRQGEYEEAIKIFYRIL 76
                899************9888765 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyek 26 
                 +aly ++ +y+  g+ ++A++ y+ 
  CCG91772.1  86 EALYSMADCYRLIGRKEDAIKIYQL 110
                 79*******************9985 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.035
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALe 29 
                 a++  G ++ +lg++ +A  + + ALe
  CCG91772.1 124 AYFWEGKLLSELGNFAQAAGALKIALE 150
                 89999*************999998887 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.039
                 HHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekA 27 
                 kal + G a  k g+ +eA+ y  +A
  CCG91772.1 231 KALTRCGWAAWKSGQAKEAEHYLTQA 256
                 899*******************9998 PP

  == domain 5  score: 11.5 bits;  conditional E-value: 0.00031
                 HHHTT-HHHHHHHHHH CS
       TPR_1  11 yfklgkydeAleyyek 26 
                 y+++++y+eA+++yek
  CCG91772.1 277 YLSQNRYKEAIQFYEK 292
                 99*************8 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.88
                 HHHHHHHHH CS
       TPR_1  21 leyyekALe 29 
                 +++y+kAL+
  CCG91772.1 316 IKDYSKALS 324
                 677777775 PP

  == domain 7  score: 3.2 bits;  conditional E-value: 0.13
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnP 32 
                 l +++na + l+k+ eA e ++k L+ +P
  CCG91772.1 416 LLGRANAMYGLEKWSEAAELFKKFLTEYP 444
                 678999999*************9666555 PP

  == domain 8  score: 8.7 bits;  conditional E-value: 0.0024
                 HHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekAL 28 
                  l+ ++ k g+ +eAl+y ++AL
  CCG91772.1 455 HLASVLEKGGEKKEALKYWQEAL 477
                 6899999***************9 PP

  == domain 9  score: -1.6 bits;  conditional E-value: 4.3
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                 +G + + l++   A e  +k+L+ +P+
  CCG91772.1 494 IGILAYDLKENSLAAETMQKVLSEYPH 520
                 799999999999999999999988886 PP

  == domain 10  score: 6.5 bits;  conditional E-value: 0.012
                 HHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   8 GnayfklgkydeAleyyekALelnP 32 
                 G+  + +++y+ A ey++ A e +P
  CCG91772.1 532 GQSKYDNKEYEAAKEYFSLAREAEP 556
                 6667899**********99988777 PP

  == domain 11  score: 8.7 bits;  conditional E-value: 0.0024
                 HHHTT-HHHHHHHHHHHHH CS
       TPR_1  11 yfklgkydeAleyyekALe 29 
                 ++++gk+d A+ y++k+++
  CCG91772.1 610 LLQKGKLDLAVFYFKKVIQ 628
                 789**************98 PP

  == domain 12  score: 5.3 bits;  conditional E-value: 0.028
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnP 32 
                 +l +l+ +   lg++ +A +  e++L  +P
  CCG91772.1 677 VLLGLAETQIALGQFADAQKNLEEVLLKEP 706
                 5788999*****************997766 PP

  == domain 13  score: 9.0 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyye 25 
                 aka   +G  y+ +++y eA ++y 
  CCG91772.1 712 AKARMLIGDNYLAQKNYREAAKAYT 736
                 7888999999**************6 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   0.00016      0.11       5      28 ..      53      76 ..      49      82 .. 0.89
   2 ?    5.2   0.0     0.072        48       2      35 ..      86     119 ..      85     126 .. 0.90
   3 !   11.1   0.5   0.00087      0.58       7      41 ..     128     164 ..     122     169 .. 0.73
   4 ?    3.0   0.0      0.36   2.4e+02       3      27 ..     232     256 ..     230     263 .. 0.87
   5 ?    3.7   0.0      0.21   1.4e+02       7      26 ..     273     292 ..     268     294 .. 0.90
   6 ?    0.8   0.0       1.9   1.2e+03       3      36 ..     305     338 ..     303     346 .. 0.88
   7 ?    7.5   0.0     0.013       8.6       4      38 ..     416     450 ..     413     455 .. 0.89
   8 ?    5.7   0.0      0.05        33       5      28 ..     454     477 ..     450     489 .. 0.87
   9 ?    1.2   0.4       1.3   8.8e+02      12      42 ..     536     568 ..     527     570 .. 0.78
  10 ?   -1.0   0.0       6.8   4.5e+03       2      19 ..     562     579 ..     561     587 .. 0.84
  11 ?    5.5   0.0     0.055        37       2      31 ..     601     630 ..     600     635 .. 0.92
  12 ?   -0.2   0.0       3.8   2.5e+03       4      35 ..     641     672 ..     639     673 .. 0.89
  13 !    9.4   0.1    0.0031       2.1       4      38 ..     678     715 ..     675     720 .. 0.82
  14 ?    2.8   0.2      0.43   2.8e+02       2      25 ..     713     736 ..     711     745 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00016
      TPR_14  5 lalaeallalGdpdeAiallrral 28
                l++a al+++G+++eAi+++ r+l
  CCG91772.1 53 LDRAIALYRQGEYEEAIKIFYRIL 76
                799*****************9987 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.072
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPdda 35 
                 eal+ +a+ ++  G+ ++Ai++++ +++ +P++a
  CCG91772.1  86 EALYSMADCYRLIGRKEDAIKIYQLLVQSDPSSA 119
                 799999**********************999886 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00087
      TPR_14   7 laeallalGdpdeAiallrralal.aPddaeaw.lll 41 
                  +++l +lG++++A+ +l+ al++ +P+ a a  +ll
  CCG91772.1 128 EGKLLSELGNFAQAAGALKIALEKaDPQTANAAsFLL 164
                 578999*****************63687764442333 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.36
      TPR_14   3 allalaeallalGdpdeAiallrra 27 
                 al + ++a + +G+ +eA+ +l +a
  CCG91772.1 232 ALTRCGWAAWKSGQAKEAEHYLTQA 256
                 6677899************999877 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.21
      TPR_14   7 laeallalGdpdeAiallrr 26 
                 l e++l + +++eAi+ +++
  CCG91772.1 273 LFEFYLSQNRYKEAIQFYEK 292
                 789*************9986 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 1.9
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddae 36 
                  ll+l  a+ +  d+ +A+ + +  la +P++  
  CCG91772.1 305 ILLDLSTAYIEIKDYSKALSVIDLFLANYPKSSL 338
                 689999******************9*99999865 PP

  == domain 7  score: 7.5 bits;  conditional E-value: 0.013
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeaw 38 
                 ll +a a++ l+++ eA++l+++ l  +P+++e+ 
  CCG91772.1 416 LLGRANAMYGLEKWSEAAELFKKFLTEYPKSREIV 450
                 788999************************99875 PP

  == domain 8  score: 5.7 bits;  conditional E-value: 0.05
      TPR_14   5 lalaeallalGdpdeAiallrral 28 
                 + la++l+  G+ +eA+++ ++al
  CCG91772.1 454 MHLASVLEKGGEKKEALKYWQEAL 477
                 679*******************98 PP

  == domain 9  score: 1.2 bits;  conditional E-value: 1.3
      TPR_14  12 lalGdpdeAiallrralalaP..ddaeawllla 42 
                 + + ++++A +++  a ++ P    ++a l+la
  CCG91772.1 536 YDNKEYEAAKEYFSLAREAEPekLYLAATLMLA 568
                 677899************999433467778887 PP

  == domain 10  score: -1.0 bits;  conditional E-value: 6.8
      TPR_14   2 eallalaeallalGdpde 19 
                 +a+l+la++ ++++d ++
  CCG91772.1 562 AATLMLAWIAYHQDDVEK 579
                 6899****9999999876 PP

  == domain 11  score: 5.5 bits;  conditional E-value: 0.055
      TPR_14   2 eallalaeallalGdpdeAiallrralala 31 
                 e+++ +a+ ll+ G++d A+ ++++++++a
  CCG91772.1 601 ELYYWIASRLLQKGKLDLAVFYFKKVIQTA 630
                 78999********************99975 PP

  == domain 12  score: -0.2 bits;  conditional E-value: 3.8
      TPR_14   4 llalaeallalGdpdeAiallrralalaPdda 35 
                 l++lae ++ l +++eA +++ +  +++P++a
  CCG91772.1 641 LWQLAETERKLMNWKEANTYYLEFQKADPQNA 672
                 679999999999*********99999999986 PP

  == domain 13  score: 9.4 bits;  conditional E-value: 0.0031
      TPR_14   4 llalaeallalGdpdeAiallrralalaP...ddaeaw 38 
                 ll lae   alG++++A + l+++l + P   ++a a+
  CCG91772.1 678 LLGLAETQIALGQFADAQKNLEEVLLKEPegeNNAKAR 715
                 6889********************99988554555555 PP

  == domain 14  score: 2.8 bits;  conditional E-value: 0.43
      TPR_14   2 eallalaeallalGdpdeAiallr 25 
                 +a++++++ +la+ +++eA++++ 
  CCG91772.1 713 KARMLIGDNYLAQKNYREAAKAYT 736
                 688889999************985 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.075        50      10      25 ..      58      73 ..      53      76 .. 0.82
   2 !   14.3   0.0   5.3e-05     0.035       2      33 ..      86     117 ..      85     118 .. 0.95
   3 ?    4.4   0.0     0.078        52       3      20 ..     124     141 ..     122     150 .. 0.88
   4 ?    5.7   0.1      0.03        20       3      27 ..     232     256 ..     230     258 .. 0.87
   5 !    8.4   0.8    0.0043       2.8      11      26 ..     277     292 ..     275     292 .. 0.94
   6 ?    2.5   0.1      0.32   2.1e+02       4      23 ..     306     325 ..     304     335 .. 0.84
   7 ?    4.3   0.1     0.087        58       4      28 ..     453     477 ..     450     479 .. 0.88
   8 ?    1.3   0.0      0.81   5.4e+02       6      32 ..     493     519 ..     489     521 .. 0.86
   9 ?    6.3   0.2      0.02        13       8      32 ..     532     556 ..     529     558 .. 0.80
  10 !   14.8   0.1   3.7e-05     0.025       2      29 ..     601     628 ..     600     632 .. 0.92
  11 ?   -0.5   0.1       2.9   1.9e+03       3      34 .]     640     671 ..     638     671 .. 0.79
  12 ?    4.4   0.0     0.078        52       2      28 ..     676     702 ..     675     703 .. 0.90
  13 !    8.5   0.7    0.0038       2.5       1      27 [.     712     738 ..     712     745 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.075
                HHHHTT-HHHHHHHHH CS
       TPR_8 10 iylklgdyeeAkeyye 25
                ++  +g+yeeA++ + 
  CCG91772.1 58 ALYRQGEYEEAIKIFY 73
                67889********996 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 5.3e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ea+y ++++y+  g++e A++ y+  ++ dp+
  CCG91772.1  86 EALYSMADCYRLIGRKEDAIKIYQLLVQSDPS 117
                 79*************************99996 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.078
                 HHHHHHHHHHHTT-HHHH CS
       TPR_8   3 ayynlgsiylklgdyeeA 20 
                 ay++ g+++++lg++ +A
  CCG91772.1 124 AYFWEGKLLSELGNFAQA 141
                 8**************999 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyeka 27 
                 a+ + g++ +k g+ +eA+ y+ +a
  CCG91772.1 232 ALTRCGWAAWKSGQAKEAEHYLTQA 256
                 6677799***************998 PP

  == domain 5  score: 8.4 bits;  conditional E-value: 0.0043
                 HHHTT-HHHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyyek 26 
                 yl++++y+eA+++yek
  CCG91772.1 277 YLSQNRYKEAIQFYEK 292
                 99*************8 PP

  == domain 6  score: 2.5 bits;  conditional E-value: 0.32
                 HHHHHHHHHHTT-HHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkey 23 
                 ++ l+ +y++ +dy +A ++
  CCG91772.1 306 LLDLSTAYIEIKDYSKALSV 325
                 678999**********9876 PP

  == domain 7  score: 4.3 bits;  conditional E-value: 0.087
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekal 28 
                  ++l+s+++k g+++eA +y ++al
  CCG91772.1 453 KMHLASVLEKGGEKKEALKYWQEAL 477
                 5789****************99887 PP

  == domain 8  score: 1.3 bits;  conditional E-value: 0.81
                 HHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldp 32 
                 ++g +  +l++   A e+++k+l+  p
  CCG91772.1 493 QIGILAYDLKENSLAAETMQKVLSEYP 519
                 78889999**************99766 PP

  == domain 9  score: 6.3 bits;  conditional E-value: 0.02
                 HHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldp 32 
                 g+   + ++ye+Akey+  a e++p
  CCG91772.1 532 GQSKYDNKEYEAAKEYFSLAREAEP 556
                 66677899*********88766665 PP

  == domain 10  score: 14.8 bits;  conditional E-value: 3.7e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 e+yy+++s +l++g+++ A+ y++k+++
  CCG91772.1 601 ELYYWIASRLLQKGKLDLAVFYFKKVIQ 628
                 79************************97 PP

  == domain 11  score: -0.5 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 ++++l+ + +kl + +eA  yy +  ++dp+n
  CCG91772.1 640 SLWQLAETERKLMNWKEANTYYLEFQKADPQN 671
                 56677777777777789999********9986 PP

  == domain 12  score: 4.4 bits;  conditional E-value: 0.078
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 ++++ l+ + + lg++  A++ +e++l
  CCG91772.1 676 PVLLGLAETQIALGQFADAQKNLEEVL 702
                 577889******************987 PP

  == domain 13  score: 8.5 bits;  conditional E-value: 0.0038
                 CCHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyeka 27 
                 a+a +++g+ yl +++y eA ++y   
  CCG91772.1 712 AKARMLIGDNYLAQKNYREAAKAYTTL 738
                 68999******************9765 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.2   0.00045       0.3      54     138 ..     100     183 ..      82     195 .. 0.85
   2 !   11.0   0.0    0.0004      0.26      86     144 ..     240     297 ..     232     324 .. 0.87
   3 ?   -1.1   0.1       1.9   1.3e+03      86     134 ..     313     363 ..     299     376 .. 0.57
   4 ?   -1.7   0.0       2.9     2e+03      55      76 ..     355     376 ..     335     396 .. 0.72
   5 ?    3.5   0.0     0.075        50      63     135 ..     400     472 ..     379     481 .. 0.80
   6 !   19.3   0.5   1.1e-06   0.00073      54     138 ..     503     586 ..     489     604 .. 0.85
   7 !   14.0   5.6   4.5e-05      0.03      66     170 ..     628     736 ..     585     743 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00045
      TPR_21  54 daakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLea 138
                  +++a + ++ l+++ +++a+a  a +   k   e g++a+A+ +L+ +leka d + ++ a+  La  +l  ++ ++++ +L +
  CCG91772.1 100 RKEDAIKIYQLLVQSDPSSAFAPTAYFWEGKLLSELGNFAQAAGALKIALEKA-DPQTANAASFLLALCQLRIGEEEKGVCRLRE 183
                 5666778899999***********************************99999.8889999******999999999998887765 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0004
      TPR_21  86 aveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakkeeaf 144
                 a ++g++++A++ L+++    + +e +++a+  L + +l ++ y+eA++  e+ k+ +f
  CCG91772.1 240 AWKSGQAKEAEHYLTQASGGPPYTEWNRIANSGLFEFYLSQNRYKEAIQFYEKHKD-GF 297
                 67899******************************************997775544.44 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.9
      TPR_21  86 aveagdlaaAkaqLewvlekakdeelkalarlR..LarvllaekkydeAlk 134
                  +e +d+ +A + ++  l++ ++ +l +la  R  +a+ +l+++ +++  +
  CCG91772.1 313 YIEIKDYSKALSVIDLFLANYPKSSLVDLAVYRkiVANYYLEQGSLEKNAQ 363
                 555566666666666666666666666666555445555555555554333 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 2.9
      TPR_21  55 aakakeaaeeladeyggtaYaa 76 
                 + +++++a+++ ++y++++Y  
  CCG91772.1 355 QGSLEKNAQQFFSQYPSSPYTY 376
                 44588999********999975 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.075
      TPR_21  63 eeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlkt 135
                 e+l++++++    +   L  A+a++  +++ +A++ +++ l + ++      +++ La+vl + ++ +eAlk 
  CCG91772.1 400 EKLESAHSSLVPKEAILLGRANAMYGLEKWSEAAELFKKFLTEYPKSREIVHVKMHLASVLEKGGEKKEALKY 472
                 56666666666666677888999999999999999999999887666544556899**************996 PP

  == domain 6  score: 19.3 bits;  conditional E-value: 1.1e-06
      TPR_21  54 daakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLea 138
                 ++  a+e ++++ +ey+ ++Y  +aa ++ ++++++++++aAk+ ++ + e +  e+l   a+l La +   ++++++  + +++
  CCG91772.1 503 ENSLAAETMQKVLSEYPHSSYRGVAAWIVGQSKYDNKEYEAAKEYFSLAREAE-PEKLYLAATLMLAWIAYHQDDVEKVCSYVQS 586
                 44556889999**********************************97666665.5669999**************9998777765 PP

  == domain 7  score: 14.0 bits;  conditional E-value: 4.5e-05
      TPR_21  66 adeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLea....kkeeafaalvaelrGDilvaqg 160
                 + + ++ +Y   +  +lA+++ +  ++++A++ + +  +  ++++ ++ + l La+ ++a +++++A k Le+    ++e + +a++  l GD ++aq+
  CCG91772.1 628 QTAQSKEKYYISSLWQLAETERKLMNWKEANTYYLEFQKADPQNASNSPVLLGLAETQIALGQFADAQKNLEEvllkEPEGENNAKARMLIGDNYLAQK 726
                 444555566666666777777777777777777777777777777777777777777777777777777775411114556667777777777777777 PP

      TPR_21 161 kldeAraaYq 170
                 +  eA +aY+
  CCG91772.1 727 NYREAAKAYT 736
                 7777777775 PP

>> YfiO  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1       0.7   4.6e+02      43      71 ..      50      78 ..      47     126 .. 0.72
   2 !   24.2   7.1   3.5e-08   2.3e-05      16     126 ..     278     375 ..     270     380 .. 0.88
   3 !   16.7   0.1   6.8e-06    0.0045       8     126 ..     379     524 ..     376     528 .. 0.79
   4 !    9.9   3.7   0.00085      0.56      11      77 ..     531     596 ..     526     635 .. 0.84
   5 !   12.9   0.4   9.9e-05     0.066      12      66 ..     682     736 ..     671     745 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.7
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
        YfiO 43 qaqldliyAyykdadyaealasaerFlrl 71
                ++ ld + A y++++y+ea++   r l l
  CCG91772.1 50 DVDLDRAIALYRQGEYEEAIKIFYRILPL 78
                67788888888888888888776665554 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 3.5e-08
                 HHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SSSTTHHHHHHHHHHHHHHHHSHSCTTTS-THHHHHHHHHHH CS
        YfiO  16 lqkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlrlyPthknvdyvlYlrglsalaqarellrskrdpesarqafedfk 114
                 l+++ y+eAi+  e+ ++ +   ++ e+  ldl  Ay + +dy++al  ++ Fl++yP++  vd ++Y + ++++   ++          +    ++++
  CCG91772.1 278 LSQNRYKEAIQFYEKHKDGFIE-NQKENILLDLSTAYIEIKDYSKALSVIDLFLANYPKSSLVDLAVYRKIVANYYLEQGS---------L---EKNAQ 363
                 8899****************86.67899********************************************999887777.........2...23556 PP

                 HHHHHSTTSTTH CS
        YfiO 115 klvekyPdseYa 126
                 ++ ++yP+s+Y+
  CCG91772.1 364 QFFSQYPSSPYT 375
                 778888888887 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 6.8e-06
                 HHHHHHHHHHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SSSTTHHHHHHHHHH.........HHHHHHSHSC CS
        YfiO   8 lYekgqealqkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlrlyPthknvdyvlYlrgl.........salaqarell 97 
                 lY ++++  + g+++ A    e+l+s +      e   l  + A+y  +  +ea++  ++Fl  yP+++++  v   +++          al+ ++e l
  CCG91772.1 379 LYLEAEDFNRTGKFTLALPIWEKLESAHSSLVPKEAILLGRANAMYGLEKWSEAAELFKKFLTEYPKSREIVHVKMHLASvlekggekkEALKYWQEAL 477
                 677888888889999999999999999999888899999999******************************997666664666666664455555555 PP

                 ..................TTTS-THHHHHHHHHHHHHHHHSTTSTTH CS
        YfiO  98 ..................rskrdpesarqafedfkklvekyPdseYa 126
                                       d ++   a e ++k +++yP+s Y 
  CCG91772.1 478 gsvkrtdperqscleqigILAYDLKENSLAAETMQKVLSEYPHSSYR 524
                 776655444444444444445555999999***************95 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00085
                 HHHHHHHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SSSTT CS
        YfiO  11 kgqealqkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlrlyPthkn 77 
                  gq+++ +++y++A+++++ + +  P   y   a l+l+  +y+++d++++  +++++  +y +  +
  CCG91772.1 531 VGQSKYDNKEYEAAKEYFSLAREAEPEKLYL-AATLMLAWIAYHQDDVEKVCSYVQSYEDNYKKGAE 596
                 599***********************99887.589***************************87544 PP

  == domain 5  score: 12.9 bits;  conditional E-value: 9.9e-05
                 HHHHHHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHH CS
        YfiO  12 gqealqkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasae 66 
                 ++++++ g++a+A+k+le++  + P ++  ++a++ + + y+ +++y ea++++ 
  CCG91772.1 682 AETQIALGQFADAQKNLEEVLLKEPEGENNAKARMLIGDNYLAQKNYREAAKAYT 736
                 677888899****************************************998775 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.9e-05     0.013      32      79 ..      58     108 ..      53     111 .. 0.89
   2 !   12.1   0.1   0.00027      0.18       7      73 ..     103     175 ..     102     184 .. 0.79
   3 !    8.8   0.1    0.0027       1.8       7      48 ..     123     183 ..     121     201 .. 0.68
   4 ?   -0.6   0.0       2.4   1.6e+03      30      49 ..     237     256 ..     212     263 .. 0.73
   5 !    9.9   0.1    0.0013      0.84      32      79 ..     276     326 ..     272     329 .. 0.78
   6 !    9.9   0.0    0.0012      0.82      19      81 ..     372     438 ..     355     439 .. 0.81
   7 ?   -1.2   0.0       3.8   2.5e+03      33      52 ..     460     480 ..     453     514 .. 0.52
   8 ?    2.6   1.2      0.24   1.6e+02      19      66 ..     521     566 ..     498     580 .. 0.72
   9 ?    0.7   2.0      0.94   6.3e+02       2      49 ..     538     587 ..     533     598 .. 0.62
  10 !   11.5   0.9   0.00039      0.26       2      81 ..     613     700 ..     612     701 .. 0.78
  11 !   11.9   0.2    0.0003       0.2      21      79 ..     670     735 ..     665     738 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-05
                 HHHHTT-HHHHHHHHHCT.SHHHC-H..HHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  32 clylngqykrAyellrka.klnsksl..gcrylfAqcllkLkkyeeAiaaL 79 
                 +ly++g+y++A++++ +   l s  +  +++y +A c+  +++ e+Ai+++
  CCG91772.1  58 ALYRQGEYEEAIKIFYRIlPLLSPGKktEALYSMADCYRLIGRKEDAIKIY 108
                 89*************99988887777789*********999*******986 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00027
                 HHHHHHHHHH....HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT..SHHHC-H.HHHHHHHHHHHHTT-HH CS
      ANAPC3   7 nAiflaerlla...aetespedayllAlclylngqykrAyellrka..klnsksl.gcrylfAqcllkLkkye 73 
                 +Ai ++ +l++   +++  p + ++ ++ l ++g++ +A   l+ a  k ++++  ++ +l+A c+l +++ e
  CCG91772.1 103 DAIKIYQLLVQsdpSSAFAPTAYFWEGKLLSELGNFAQAAGALKIAleKADPQTAnAASFLLALCQLRIGEEE 175
                 78999999995445778889999999************9999998873344444489999*****99988755 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0027
                 HHHHHHHHHH...................HHH--HHH.HHHHHHHHHHTT-HHHHHHHHHC CS
      ANAPC3   7 nAiflaerll..................aaetesped.ayllAlclylngqykrAyellrk 48 
                 +A+f+  +ll                  +a+++ +++ ++llAlc ++ g+ ++    lr+
  CCG91772.1 123 TAYFWEGKLLselgnfaqaagalkialeKADPQTANAaSFLLALCQLRIGEEEKGVCRLRE 183
                 6777777777777777777777777665577777776456668888777766666555555 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 2.4
                 HHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  30 AlclylngqykrAyellrka 49 
                 + +  ++gq k+A ++l +a
  CCG91772.1 237 GWAAWKSGQAKEAEHYLTQA 256
                 5667789*********9998 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.0013
                 HHHHTT-HHHHHHHHHCT.SHHHC-H..HHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  32 clylngqykrAyellrka.klnsksl..gcrylfAqcllkLkkyeeAiaaL 79 
                  ++++++yk+A+++++k+ +   +++  ++++ +  +++++k y +A++++
  CCG91772.1 276 FYLSQNRYKEAIQFYEKHkDGFIENQkeNILLDLSTAYIEIKDYSKALSVI 326
                 699999999999999999887777773245555558888999999999886 PP

  == domain 6  score: 9.9 bits;  conditional E-value: 0.0012
                 HH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-H..HHHHHHHHHH..HHTT-HHHHHHHH-S CS
      ANAPC3  19 etespedayllAlclylngqykrAyellrkaklnsksl..gcrylfAqcl..lkLkkyeeAiaaLek 81 
                 +++ +  +yl A+ + ++g+++ A+ + +k++++++sl  + ++l++++   + L+k+ eA  +++k
  CCG91772.1 372 SPYTYPLLYLEAEDFNRTGKFTLALPIWEKLESAHSSLvpKEAILLGRANamYGLEKWSEAAELFKK 438
                 55555558999********************99999999*777777755433899*******99987 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 3.8
                 HHHTT-HHHHHHHHHCT.SHH CS
      ANAPC3  33 lylngqykrAyellrka.kln 52 
                 l + g+ k+A+++ ++a ++ 
  CCG91772.1 460 LEKGGEKKEALKYWQEAlGSV 480
                 555555555555555553333 PP

  == domain 8  score: 2.6 bits;  conditional E-value: 0.24
                 HH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHH CS
      ANAPC3  19 etespedayllAlclylngqykrAyellrkaklnskslgcrylfAqcl 66 
                 ++++  +a   +++ y n++y+ A e+++ a  ++  ++ +yl+A   
  CCG91772.1 521 SSYRGVAAWIVGQSKYDNKEYEAAKEYFSLA--REAEPEKLYLAATLM 566
                 444445566679999**********999999..566666678888654 PP

  == domain 9  score: 0.7 bits;  conditional E-value: 0.94
                 TT-HHHHHHHHHHHH.HHH--HHH..HHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3   2 qnnyknAiflaerllaaetesped..ayllAlclylngqykrAyellrka 49 
                 ++ y+ A  +++++ +ae+e ++   +++lA   y++ + ++ + +++++
  CCG91772.1 538 NKEYEAAKEYFSLAREAEPEKLYLaaTLMLAWIAYHQDDVEKVCSYVQSY 587
                 45555555555555555555544322555688888888888888888877 PP

  == domain 10  score: 11.5 bits;  conditional E-value: 0.00039
                 TT-HHHHHHHHHHHH.HHH--HHHHHH.....HHHHHHHTT-HHHHHHHHHCT.SHHHC-H...HHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   2 qnnyknAiflaerllaaetespedayl.....lAlclylngqykrAyellrka.klnsksl...gcrylfAqcllkLkkyeeAiaaLek 81 
                 +++++ A+f++ ++  + ++s e  y      lA++  ++ ++k+A +++ ++ k ++++     +++ +A+++++L+++ +A + Le+
  CCG91772.1 613 KGKLDLAVFYFKKVI-QTAQSKEKYYIsslwqLAETERKLMNWKEANTYYLEFqKADPQNAsnsPVLLGLAETQIALGQFADAQKNLEE 700
                 677888*********.55555555444333348****************9999888888887445666667*************99997 PP

  == domain 11  score: 11.9 bits;  conditional E-value: 0.0003
                 --HHH..HHH.HHHHHHHTT-HHHHHHHHHCT.SHHHC-H...HHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  21 esped..ayl.lAlclylngqykrAyellrka.klnsksl...gcrylfAqcllkLkkyeeAiaaL 79 
                 +++++  ++l lA++   +gq+  A++ l++   ++++ +   ++r+l++  +l++k+y eA +a+
  CCG91772.1 670 QNASNspVLLgLAETQIALGQFADAQKNLEEVlLKEPEGEnnaKARMLIGDNYLAQKNYREAAKAY 735
                 5555533222369999999999999987777754444333444*******************9986 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.018        12       7      22 ..      57      72 ..      53      79 .. 0.84
   2 !   11.1   0.0    0.0005      0.33       1      31 [.      87     115 ..      87     119 .. 0.85
   3 ?    5.4   0.0     0.033        22       6      31 ..     129     152 ..     129     157 .. 0.83
   4 ?    1.7   0.0      0.48   3.2e+02       1      27 [.     232     256 ..     232     260 .. 0.89
   5 !   11.3   0.1   0.00042      0.28       8      24 ..     276     292 ..     275     300 .. 0.91
   6 ?   -1.4   0.0         5   3.3e+03       3      21 ..     307     325 ..     305     330 .. 0.82
   7 ?    2.5   0.0      0.27   1.8e+02      12      26 ..     426     440 ..     417     450 .. 0.82
   8 ?    2.1   0.0      0.36   2.4e+02       5      27 ..     456     478 ..     454     487 .. 0.81
   9 ?   -1.9   0.1       6.9   4.6e+03       2      23 ..     641     662 ..     640     663 .. 0.81
  10 !    7.8   0.0    0.0054       3.6       2      35 ..     678     709 ..     677     710 .. 0.92
  11 ?    1.2   0.1      0.72   4.8e+02       9      24 ..     722     737 ..     717     747 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.018
       TPR_7  7 rlysrlGdyeeAiely 22
                 +  r+G+yeeAi+++
  CCG91772.1 57 IALYRQGEYEEAIKIF 72
                566799*******987 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0005
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 aL+ +a++y+  G+ e+Ai++y+    + +d
  CCG91772.1  87 ALYSMADCYRLIGRKEDAIKIYQL--LVQSD 115
                 799*******************98..55555 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.033
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkd 31 
                 + l s+lG++++A++ ++   al+k+
  CCG91772.1 129 GKLLSELGNFAQAAGALKI--ALEKA 152
                 67899************99..66654 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.48
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLa 27 
                 aL + + +  + G+ +eA+ +++q  a
  CCG91772.1 232 ALTRCGWAAWKSGQAKEAEHYLTQ--A 256
                 6788899999*************9..3 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 0.00042
       TPR_7   8 lysrlGdyeeAielyeq 24 
                  y ++++y+eAi++ye+
  CCG91772.1 276 FYLSQNRYKEAIQFYEK 292
                 599*************9 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 5
       TPR_7   3 lnLarlysrlGdyeeAiel 21 
                 l L  +y +  dy++A+++
  CCG91772.1 307 LDLSTAYIEIKDYSKALSV 325
                 56777899999*****986 PP

  == domain 7  score: 2.5 bits;  conditional E-value: 0.27
       TPR_7  12 lGdyeeAielyeqsL 26 
                 l +++eA+el+++ L
  CCG91772.1 426 LEKWSEAAELFKKFL 440
                 578*********966 PP

  == domain 8  score: 2.1 bits;  conditional E-value: 0.36
       TPR_7   5 LarlysrlGdyeeAielyeqsLa 27 
                 La++ ++ G+ +eA+++ +++L+
  CCG91772.1 456 LASVLEKGGEKKEALKYWQEALG 478
                 99***************999774 PP

  == domain 9  score: -1.9 bits;  conditional E-value: 6.9
       TPR_7   2 LlnLarlysrlGdyeeAielye 23 
                 L +La++ ++l +++eA ++y 
  CCG91772.1 641 LWQLAETERKLMNWKEANTYYL 662
                 6778888888999***999996 PP

  == domain 10  score: 7.8 bits;  conditional E-value: 0.0054
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdpeda 35 
                 Ll La+++ +lG++++A + +e+  +l k+pe++
  CCG91772.1 678 LLGLAETQIALGQFADAQKNLEE--VLLKEPEGE 709
                 889********************..999999876 PP

  == domain 11  score: 1.2 bits;  conditional E-value: 0.72
       TPR_7   9 ysrlGdyeeAielyeq 24 
                 y ++ +y+eA++ y+ 
  CCG91772.1 722 YLAQKNYREAAKAYTT 737
                 78899*********97 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.015       9.9      33      50 ..      53      70 ..      49      88 .. 0.87
   2 !    9.9   0.0    0.0012       0.8      12      67 ..     102     159 ..      99     166 .. 0.78
   3 ?    2.9   0.0      0.18   1.2e+02       3      27 ..     311     335 ..     309     341 .. 0.84
   4 ?    4.9   0.0     0.044        29      35      72 ..     419     456 ..     414     457 .. 0.88
   5 ?    3.7   0.0      0.11        71      38      71 ..     684     717 ..     679     719 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.015
       TPR_9 33 rdRGlllaqlGclsaAla 50
                +dR+++l+++G +++A++
  CCG91772.1 53 LDRAIALYRQGEYEEAIK 70
                59**************97 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0012
       TPR_9  12 eralavverllllaPdd...peerrdRGlllaqlGclsaAladLeaylalapdapdaea 67 
                 e a++++++l++ +P +   p  ++  G ll +lG++++A+ +L  +l++a d+++a a
  CCG91772.1 102 EDAIKIYQLLVQSDPSSafaPTAYFWEGKLLSELGNFAQAAGALKIALEKA-DPQTANA 159
                 668888888888888753337889999*********************887.4444444 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.18
       TPR_9   3 aiaireedweralavverllllaPd 27 
                  ++i+ +d+++al v+++ l+  P+
  CCG91772.1 311 TAYIEIKDYSKALSVIDLFLANYPK 335
                 5789999**********99987665 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.044
       TPR_9  35 RGlllaqlGclsaAladLeaylalapdapdaeairaqL 72 
                 R+ + + l+ +s+A++ +  +l   p+ +++  ++++L
  CCG91772.1 419 RANAMYGLEKWSEAAELFKKFLTEYPKSREIVHVKMHL 456
                 888999********************998888777776 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.11
       TPR_9  38 llaqlGclsaAladLeaylalapdapdaeairaq 71 
                  +  lG+++ A + Le  l ++p+ +  + +r++
  CCG91772.1 684 TQIALGQFADAQKNLEEVLLKEPEGENNAKARML 717
                 56789******************99888887776 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1    0.0021       1.4       4      20 ..      52      68 ..      49      69 .. 0.91
   2 ?    3.8   0.0      0.17   1.1e+02       3      21 ..     124     142 ..     122     145 .. 0.85
   3 ?    2.0   0.1      0.69   4.6e+02       6      21 ..     235     250 ..     232     250 .. 0.86
   4 ?    4.0   0.0      0.16     1e+02       2      18 ..     562     578 ..     561     581 .. 0.90
   5 !    9.2   0.1    0.0031       2.1       3      21 ..     677     695 ..     676     696 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0021
       TPR_4  4 llaLArallalGdldeA 20
                 l++A al+++G+++eA
  CCG91772.1 52 DLDRAIALYRQGEYEEA 68
                689*************9 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.17
       TPR_4   3 allaLArallalGdldeAr 21 
                 a+ + + +l +lG++++A+
  CCG91772.1 124 AYFWEGKLLSELGNFAQAA 142
                 78899999**********8 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.69
       TPR_4   6 aLArallalGdldeAr 21 
                   ++a++  G++ eA+
  CCG91772.1 235 RCGWAAWKSGQAKEAE 250
                 579***********97 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.16
       TPR_4   2 rallaLArallalGdld 18 
                 +a+l+LA+ ++++ d +
  CCG91772.1 562 AATLMLAWIAYHQDDVE 578
                 799**********9986 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.0031
       TPR_4   3 allaLArallalGdldeAr 21 
                 +ll+LA+++ alG++++A+
  CCG91772.1 677 VLLGLAETQIALGQFADAQ 695
                 5899*************96 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.48   3.2e+02      19      34 .]      55      70 ..      53      70 .. 0.89
   2 ?    4.0   0.0      0.12        78      14      34 .]      86     106 ..      81     106 .. 0.91
   3 ?    3.2   0.0      0.21   1.4e+02       5      32 ..     111     141 ..     107     142 .. 0.83
   4 ?    0.4   0.0       1.6   1.1e+03      21      34 .]     275     288 ..     272     288 .. 0.89
   5 ?   -1.2   0.0       5.5   3.7e+03       2      33 ..     436     470 ..     435     471 .. 0.72
   6 !   11.7   0.1   0.00042      0.28       1      34 []     660     696 ..     660     696 .. 0.92
   7 ?   -0.6   0.3       3.4   2.3e+03      11      32 ..     710     731 ..     709     734 .. 0.91
   8 ?   -1.1   0.2       4.8   3.2e+03      14      32 ..     750     768 ..     724     769 .. 0.63

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.48
      TPR_17 19 LAelllknGdlmtArq 34
                +A +l+++G++++A++
  CCG91772.1 55 RAIALYRQGEYEEAIK 70
                799***********85 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.12
      TPR_17  14 daynnLAelllknGdlmtArq 34 
                 +a++ +A +++ +G++++A++
  CCG91772.1  86 EALYSMADCYRLIGRKEDAIK 106
                 89****************985 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.21
      TPR_17   5 aleldPnn...adaynnLAelllknGdlmtA 32 
                  ++ dP++   + ay+  ++ll+++G++++A
  CCG91772.1 111 LVQSDPSSafaPTAYFWEGKLLSELGNFAQA 141
                 5667888888899**************9998 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 1.6
      TPR_17  21 elllknGdlmtArq 34 
                 e++l+++++++A+q
  CCG91772.1 275 EFYLSQNRYKEAIQ 288
                 789*********98 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 5.5
      TPR_17   2 ylkaleldPnn...adaynnLAelllknGdlmtAr 33 
                 ++k+l  +P++   + +   LA +l+k G++++A+
  CCG91772.1 436 FKKFLTEYPKSreiVHVKMHLASVLEKGGEKKEAL 470
                 67777777776666666667999999999999886 PP

  == domain 6  score: 11.7 bits;  conditional E-value: 0.00042
      TPR_17   1 lylkaleldPnn...adaynnLAelllknGdlmtArq 34 
                 +yl++ + dP n   ++++  LAe++  +G++++A++
  CCG91772.1 660 YYLEFQKADPQNasnSPVLLGLAETQIALGQFADAQK 696
                 589999999999999********************96 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 3.4
      TPR_17  11 nnadaynnLAelllknGdlmtA 32 
                 nna+a  + +  +l ++++++A
  CCG91772.1 710 NNAKARMLIGDNYLAQKNYREA 731
                 899999999*99******9998 PP

  == domain 8  score: -1.1 bits;  conditional E-value: 4.8
      TPR_17  14 daynnLAelllknGdlmtA 32 
                 +a++  A  ++k+Gd ++A
  CCG91772.1 750 KAMQKAAFSFSKAGDNDQA 768
                 3444445555688888887 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1    0.0022       1.5       8      28 ..      56      76 ..      55      78 .. 0.86
   2 ?   -2.2   0.0       6.7   4.4e+03       5       9 ..     162     166 ..     135     175 .. 0.51
   3 ?   -2.3   0.0       7.2   4.8e+03       5      16 ..     162     173 ..     158     189 .. 0.73
   4 !    9.8   0.0    0.0012       0.8       7      32 ..     309     334 ..     305     337 .. 0.91
   5 ?   -0.2   0.0       1.6   1.1e+03       8      35 ..     420     447 ..     419     453 .. 0.82
   6 ?    2.7   0.4       0.2   1.3e+02      12      33 ..     536     557 ..     532     560 .. 0.88
   7 ?    0.0   0.0       1.4   9.2e+02       4      35 ..     641     672 ..     639     674 .. 0.89
   8 ?    1.7   0.0      0.42   2.8e+02      12      33 ..     686     707 ..     678     718 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0022
                HHHHHHHT-HHHHHHHHHHHH CS
  Fis1_TPR_C  8 AlGhyklgeYseArryvdalL 28
                A++ y++geY+eA +   ++L
  CCG91772.1 56 AIALYRQGEYEEAIKIFYRIL 76
                9************98876665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.7
                 HHHHH CS
  Fis1_TPR_C   5 YylAl 9  
                 ++lAl
  CCG91772.1 162 FLLAL 166
                 44455 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 7.2
                 HHHHHHHHHHT- CS
  Fis1_TPR_C   5 YylAlGhyklge 16 
                 ++lAl ++++ge
  CCG91772.1 162 FLLALCQLRIGE 173
                 789999999987 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.0012
                 HHHHHHHHT-HHHHHHHHHHHHHHTT CS
  Fis1_TPR_C   7 lAlGhyklgeYseArryvdalLeiEP 32 
                 l+ +++ +++Ys+A+  +d +L+  P
  CCG91772.1 309 LSTAYIEIKDYSKALSVIDLFLANYP 334
                 799*******************9776 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 1.6
                 HHHHHHHT-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C   8 AlGhyklgeYseArryvdalLeiEPenr 35 
                 A + y l + seA ++ + +L   P+ r
  CCG91772.1 420 ANAMYGLEKWSEAAELFKKFLTEYPKSR 447
                 5688999999999999999998877655 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.2
                 HHHT-HHHHHHHHHHHHHHTTS CS
  Fis1_TPR_C  12 yklgeYseArryvdalLeiEPe 33 
                 y  +eY+ A++y     e EPe
  CCG91772.1 536 YDNKEYEAAKEYFSLAREAEPE 557
                 6679*********999999997 PP

  == domain 7  score: 0.0 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHT-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C   4 lYylAlGhyklgeYseArryvdalLeiEPenr 35 
                 l +lA    kl + +eA  y   + + +P+n 
  CCG91772.1 641 LWQLAETERKLMNWKEANTYYLEFQKADPQNA 672
                 678888899************99999999995 PP

  == domain 8  score: 1.7 bits;  conditional E-value: 0.42
                 HHHT-HHHHHHHHHHHHHHTTS CS
  Fis1_TPR_C  12 yklgeYseArryvdalLeiEPe 33 
                 + lg++ +A + ++ +L +EPe
  CCG91772.1 686 IALGQFADAQKNLEEVLLKEPE 707
                 5589*****************8 PP

>> TPR_18  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       3.4   2.2e+03     116     141 ..      99     124 ..      82     126 .. 0.80
   2 !   22.2   1.4   1.9e-07   0.00012      21     105 ..     278     361 ..     275     367 .. 0.89
   3 ?   -1.3   0.0       3.1   2.1e+03     124     138 ..     361     375 ..     359     377 .. 0.83
   4 ?   -1.6   0.0       4.1   2.7e+03     119     135 ..     430     446 ..     378     454 .. 0.72
   5 ?    2.2   0.0      0.28   1.8e+02     114     139 ..     500     525 ..     488     530 .. 0.83
   6 ?    3.1   0.5      0.14        93      28      66 ..     506     544 ..     497     597 .. 0.72
   7 ?   -0.9   0.6       2.4   1.6e+03      53      73 ..     567     587 ..     526     673 .. 0.61
   8 ?    1.4   0.1      0.46     3e+02      16      63 ..     681     728 ..     665     737 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3.4
      TPR_18 116 eaakaafrdfkrLlsryPnseYaaDa 141
                    ++a + ++ L++  P+s +a+ a
  CCG91772.1  99 GRKEDAIKIYQLLVQSDPSSAFAPTA 124
                 5678899999************9876 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 1.9e-07
      TPR_18  21 ldegnyltaieqLealdtryPfGaYaeqaqLDLiYakykskdyelavasidrfirlnPahpkiDyvlYlrglanmaldksslqsl 105
                 l +++y++ai+  e+ +  +   +  e   LDL  a+ + kdy+ a++ id f+ ++P+   +D ++Y + +an  l+++sl++ 
  CCG91772.1 278 LSQNRYKEAIQFYEKHKDGFI-ENQKENILLDLSTAYIEIKDYSKALSVIDLFLANYPKSSLVDLAVYRKIVANYYLEQGSLEKN 361
                 667889999988888888775.4567999**************************************************999875 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.1
      TPR_18 124 dfkrLlsryPnseYa 138
                 + ++  s+yP+s Y+
  CCG91772.1 361 NAQQFFSQYPSSPYT 375
                 6678899******97 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 4.1
      TPR_18 119 kaafrdfkrLlsryPns 135
                  +a + fk+ l+ yP+s
  CCG91772.1 430 SEAAELFKKFLTEYPKS 446
                 34555566666666666 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.28
      TPR_18 114 dteaakaafrdfkrLlsryPnseYaa 139
                 d ++   a +  +++ls yP s+Y  
  CCG91772.1 500 DLKENSLAAETMQKVLSEYPHSSYRG 525
                 556777889999***********965 PP

  == domain 6  score: 3.1 bits;  conditional E-value: 0.14
      TPR_18  28 taieqLealdtryPfGaYaeqaqLDLiYakykskdyela 66 
                  a+e ++++ + yP  +Y   a+  +  +ky +k+ye+a
  CCG91772.1 506 LAAETMQKVLSEYPHSSYRGVAAWIVGQSKYDNKEYEAA 544
                 456666666666666666666666666666666666655 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 2.4
      TPR_18  53 LiYakykskdyelavasidrf 73 
                 L +  y+++d e + + ++ +
  CCG91772.1 567 LAWIAYHQDDVEKVCSYVQSY 587
                 445555555555444444443 PP

  == domain 8  score: 1.4 bits;  conditional E-value: 0.46
      TPR_18  16 eaqkaldegnyltaieqLealdtryPfGaYaeqaqLDLiYakykskdy 63 
                  a++++  g++  a ++Le++  + P G+  ++a++ +   +  +k+y
  CCG91772.1 681 LAETQIALGQFADAQKNLEEVLLKEPEGENNAKARMLIGDNYLAQKNY 728
                 58899999*************999999998888877444444455555 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.36   2.4e+02     286     309 ..      55      78 ..      50      83 .. 0.87
   2 ?    1.7   0.1       0.2   1.4e+02      84     175 ..      89     172 ..      83     197 .. 0.67
   3 ?   -0.5   0.0      0.95   6.3e+02      38      67 ..     228     257 ..     217     305 .. 0.55
   4 ?    3.2   0.0     0.073        48     156     222 ..     445     509 ..     424     526 .. 0.79
   5 !   11.0   1.0    0.0003       0.2       8     115 ..     528     635 ..     523     700 .. 0.73
   6 ?    2.5   0.5      0.11        75     211     283 ..     641     717 ..     635     741 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.36
    TPR_MalT 286 qalalqaqgreeeAlaaLeqALeL 309
                 +a+al++qg+ eeA++   ++L L
  CCG91772.1  55 RAIALYRQGEYEEAIKIFYRILPL 78 
                 6899************99999988 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.2
    TPR_MalT  84 lqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleqlepeaaldayvllarialaqG 175
                 ++ a+ ++  Gr ++A+++y+   q   +++      +  ++ + ++ll E +++ +A+ +l+ +   le+ +p++a +a  lla  +l  G
  CCG91772.1  89 YSMADCYRLIGRKEDAIKIYQLLVQ--SDPSS---AFAPTAYFWEGKLLSELGNFAQAAGALKIA---LEKADPQTANAASFLLALCQLRIG 172
                 5556666666666666666664444..33333...344455667899999999999999999988...556666666666666655555555 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.95
    TPR_MalT  38 ariaatavlGeasllqGdleaAlqalqeae 67 
                 ++  a+   G a++  G+ ++A+  l +a+
  CCG91772.1 228 TKSKALTRCGWAAWKSGQAKEAEHYLTQAS 257
                 555555555666666666555555554443 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.073
    TPR_MalT 156 epeaaldayvllarialaqGdleeAetllekaeelaresnfhvdwlanaeevrvrlwlaqgdlaaae 222
                 +++ +++  + la +    G+ +eA+++ ++a   +++++    +++++e++ +++  +++++ aae
  CCG91772.1 445 KSREIVHVKMHLASVLEKGGEKKEALKYWQEALGSVKRTDP--ERQSCLEQIGILAYDLKENSLAAE 509
                 55778999999********************9999996555..688889999988877777766665 PP

  == domain 5  score: 11.0 bits;  conditional E-value: 0.0003
    TPR_MalT   8 AllaiasgdaeralelArqALallpeddllar.iaatavlGeasllqGdleaAlqalqeaekla.rqadslhvallallqqaeilvaqGrLheAletye 104
                 A+++ +s   ++  e A++  +l +e +     +aat++l+ ++ +q d+e+ ++  q+ e+   ++a+s+++ l+ +   a  l ++G+L+ A+  ++
  CCG91772.1 528 AWIVGQSKYDNKEYEAAKEYFSLAREAEPEKLyLAATLMLAWIAYHQDDVEKVCSYVQSYEDNYkKGAESIPTELY-YWI-ASRLLQKGKLDLAVFYFK 624
                 788888888889999999999999998877666899999*******************999866255666664444.343.5556666*********** PP

    TPR_MalT 105 qalqlateqgl 115
                 + +q a+ ++ 
  CCG91772.1 625 KVIQTAQSKEK 635
                 ***98887654 PP

  == domain 6  score: 2.5 bits;  conditional E-value: 0.11
    TPR_MalT 211 lwlaqgdlaaaerwleaa....elpsdddnhflelelrn.larvllalgrydeAlellerLlkaaeelgrvrslieil 283
                 lw++ +  +++ +w ea+    e ++ d +  +   + + la +++alg++++A++ le+ l +  e++++ +  ++l
  CCG91772.1 641 LWQLAETERKLMNWKEANtyylEFQKADPQNASNSPVLLgLAETQIALGQFADAQKNLEEVLLKEPEGENN-AKARML 717
                 67777777777777777755554443333334444443348888888888888888777765544444443.344444 PP

>> ATP13  Mitochondrial ATPase expression
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.2   0.00028      0.18      55      99 ..     304     349 ..     297     365 .. 0.84
   2 ?    2.7   0.0      0.17   1.1e+02      46      86 ..     404     445 ..     393     462 .. 0.86
   3 ?   -1.9   0.0       4.3   2.9e+03      22      30 ..     636     644 ..     582     669 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00028
       ATP13  55 elLkaivssfsynneiesAlklvdkfskkYpe.ielkkefWeelle 99 
                 ++L  + ++++  +++++Al+++d f   Yp+   ++  ++++++ 
  CCG91772.1 304 NILLDLSTAYIEIKDYSKALSVIDLFLANYPKsSLVDLAVYRKIVA 349
                 7899999************************977777888888765 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.17
       ATP13  46 s.dsplyPtselLkaivssfsynneiesAlklvdkfskkYpe 86 
                 s  s+l+P+ ++L   +++++  ++ ++A +l +kf ++Yp+
  CCG91772.1 404 SaHSSLVPKEAILLGRANAMYGLEKWSEAAELFKKFLTEYPK 445
                 44799************************************7 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.3
       ATP13  22 klikkvWgi 30 
                  +i+++W++
  CCG91772.1 636 YYISSLWQL 644
                 466777775 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0072       4.8      23      73 ..      50     100 ..      33     110 .. 0.76
   2 ?    1.0   0.0      0.82   5.4e+02      22      44 ..      85     107 ..      81     118 .. 0.82
   3 ?    6.3   0.6     0.018        12      17      60 ..     152     196 ..     139     201 .. 0.81
   4 ?   -0.5   0.0       2.3   1.5e+03      23      43 ..     304     324 ..     298     332 .. 0.84
   5 ?   -1.2   0.0       4.1   2.7e+03      24      43 ..     452     471 ..     439     486 .. 0.83
   6 ?    4.8   0.5     0.054        36      14      63 ..     667     715 ..     657     717 .. 0.77
   7 ?    3.3   0.2      0.15     1e+02      20      45 ..     710     735 ..     705     770 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0072
      TPR_20  23 darldlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealgs 73 
                 d  ld A al+ +g+yeeA++ +++il   +  ++ +a   + +   ++g 
  CCG91772.1  50 DVDLDRAIALYRQGEYEEAIKIFYRILPLLSPGKKTEALYSMADCYRLIGR 100
                 678999***************999999766665555555555555555555 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.82
      TPR_20  22 ldarldlAlallaagryeeAleq 44 
                  +a + +A+ +   gr+e+A++ 
  CCG91772.1  85 TEALYSMADCYRLIGRKEDAIKI 107
                 58999***************975 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.018
      TPR_20  17 anp.ddldarldlAlallaagryeeAleqLleilkrdrkweddaa 60 
                 a+p + ++a + lAl +l  g++e+ + +L e++++  + + daa
  CCG91772.1 152 ADPqTANAASFLLALCQLRIGEEEKGVCRLRELVEKSADLRVDAA 196
                 4441345899**************************999877776 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 2.3
      TPR_20  23 darldlAlallaagryeeAle 43 
                 ++ ldl++a+++ ++y +Al+
  CCG91772.1 304 NILLDLSTAYIEIKDYSKALS 324
                 4779***************96 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 4.1
      TPR_20  24 arldlAlallaagryeeAle 43 
                  ++ lA +l ++g+++eAl+
  CCG91772.1 452 VKMHLASVLEKGGEKKEALK 471
                 67899999999999999996 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.054
      TPR_20  14 alaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkq 63 
                 a  +n ++    l lA+ ++a g+ ++A ++L e+l ++ +  ++ a+ +
  CCG91772.1 667 ADPQNASNSPVLLGLAETQIALGQFADAQKNLEEVLLKEPEG-ENNAKAR 715
                 4457778888999*********************99877654.3444444 PP

  == domain 7  score: 3.3 bits;  conditional E-value: 0.15
      TPR_20  20 ddldarldlAlallaagryeeAleqL 45 
                 ++ +ar+   + +la+++y+eA+++ 
  CCG91772.1 710 NNAKARMLIGDNYLAQKNYREAAKAY 735
                 7899******************9864 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00092      0.61       9      28 ..      56      75 ..      54      78 .. 0.89
   2 ?   -1.6   0.0       4.3   2.9e+03      16      26 ..      99     109 ..      90     116 .. 0.67
   3 ?   -2.5   0.0       8.2   5.4e+03      11      22 ..     131     142 ..     129     149 .. 0.70
   4 ?   -0.7   0.0       2.2   1.5e+03       9      28 ..     237     256 ..     233     256 .. 0.86
   5 ?    4.3   0.2     0.059        39      12      27 ..     277     292 ..     275     292 .. 0.91
   6 ?   -1.7   0.0       4.6   3.1e+03       9      27 ..     420     438 ..     418     440 .. 0.87
   7 ?    4.9   0.0     0.037        25       7      30 ..     455     478 ..     452     483 .. 0.86
   8 ?    0.4   0.0         1   6.7e+02       7      33 ..     605     631 ..     602     632 .. 0.88
   9 ?    1.8   0.2      0.36   2.4e+02       8      29 ..     681     702 ..     678     703 .. 0.90
  10 ?    0.3   0.2         1   6.8e+02       9      24 ..     719     734 ..     712     743 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00092
      TPR_10  9 analrqrgrydeAealleea 28
                a+al+++g+y+eA +++ + 
  CCG91772.1 56 AIALYRQGEYEEAIKIFYRI 75
                89*************98775 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.3
      TPR_10  16 grydeAealle 26 
                 gr ++A ++++
  CCG91772.1  99 GRKEDAIKIYQ 109
                 66666666664 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 8.2
      TPR_10  11 alrqrgrydeAe 22 
                 +l+++g++++A 
  CCG91772.1 131 LLSELGNFAQAA 142
                 577777777774 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 2.2
      TPR_10   9 analrqrgrydeAealleea 28 
                 + a ++ g+ +eAe +l +a
  CCG91772.1 237 GWAAWKSGQAKEAEHYLTQA 256
                 5677899********99776 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.059
      TPR_10  12 lrqrgrydeAeallee 27 
                 + +++ry+eA +++e+
  CCG91772.1 277 YLSQNRYKEAIQFYEK 292
                 889***********96 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 4.6
      TPR_10   9 analrqrgrydeAeallee 27 
                 ana + + ++ eA +l+++
  CCG91772.1 420 ANAMYGLEKWSEAAELFKK 438
                 78888999*******9975 PP

  == domain 7  score: 4.9 bits;  conditional E-value: 0.037
      TPR_10   7 NLanalrqrgrydeAealleeala 30 
                 +La +l + g+ +eA+++ +eal 
  CCG91772.1 455 HLASVLEKGGEKKEALKYWQEALG 478
                 689999999************995 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 1
      TPR_10   7 NLanalrqrgrydeAealleealairr 33 
                  +a +l q g++d A+ ++++++++ +
  CCG91772.1 605 WIASRLLQKGKLDLAVFYFKKVIQTAQ 631
                 68999***********99*99999876 PP

  == domain 9  score: 1.8 bits;  conditional E-value: 0.36
      TPR_10   8 LanalrqrgrydeAealleeal 29 
                 La +  ++g++++A + lee+l
  CCG91772.1 681 LAETQIALGQFADAQKNLEEVL 702
                 8889999************997 PP

  == domain 10  score: 0.3 bits;  conditional E-value: 1
      TPR_10   9 analrqrgrydeAeal 24 
                 +  + ++++y eA + 
  CCG91772.1 719 GDNYLAQKNYREAAKA 734
                 666999******9876 PP

>> SPO22  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       0.7   4.6e+02      44     271 ..      57      72 ..      39     113 .. 0.71
   2 ?    2.7   0.0      0.11        72       1      18 [.     239     256 ..     239     263 .. 0.92
   3 ?   -2.4   0.0       3.9   2.6e+03     260     273 ..     279     292 ..     275     293 .. 0.85
   4 ?    4.0   0.1     0.044        29      80     120 ..     299     336 ..     284     349 .. 0.81
   5 ?   11.8   0.1   0.00019      0.13      83     188 ..     412     516 ..     392     531 .. 0.86
   6 ?   -0.9   0.1       1.3   8.9e+02     252     274 ..     529     551 ..     528     553 .. 0.87
   7 ?    0.8   1.6      0.42   2.8e+02      37      71 ..     601     635 ..     571     663 .. 0.78
   8 ?   -3.2   0.1       6.9   4.6e+03     256     271 ..     720     735 ..     718     737 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.7
       SPO22  44 ksllskkkyeeavkWLqraldilekqesesksssdlselrlsvlrllarayleldqeesyekalkavellqkeygkkehpsllllklkillkreadeee 142
                 ++                                                                                                 
  CCG91772.1  57 IA------------------------------------------------------------------------------------------------- 58 
                 44................................................................................................. PP

       SPO22 143 ieealeemidsvelseanfklilslikrlaeksaalavrvldylldrklsfersedvvekllvalfflltqskkeedaiealedilaalehslgkqlsk 241
                                                                                                                    
  CCG91772.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

       SPO22 242 eaasalhtLLWnkgekhykaknydeAaewy 271
                                 +y++++y+eA++++
  CCG91772.1  59 ----------------LYRQGEYEEAIKIF 72 
                 ................45555555555544 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.11
       SPO22   1 lAwkegdldlAehmlska 18 
                 +Awk g+ + Aeh+l++a
  CCG91772.1 239 AAWKSGQAKEAEHYLTQA 256
                 6***************96 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.9
       SPO22 260 kaknydeAaewyel 273
                 ++ +y+eA+++ye+
  CCG91772.1 279 SQNRYKEAIQFYEK 292
                 6789*******985 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.044
       SPO22  80 selrlsvlrllarayleldqeesyekalkavellqkeygkk 120
                 ++ + ++l  l++ay+e    ++y kal+ ++l   +y+k+
  CCG91772.1 299 ENQKENILLDLSTAYIE---IKDYSKALSVIDLFLANYPKS 336
                 578999**********6...899***********9999944 PP

  == domain 5  score: 11.8 bits;  conditional E-value: 0.00019
       SPO22  83 rlsvlrllarayleldqeesyekalkavellqkeygkkehpsllllklkillkreadeeeieealeemidsvelseanfklilslikrla..eksaala 179
                 + ++l   a+a+++    e++ +a ++ +   +ey+k+ ++++  + l+  l ++   +e ++  +e + sv+ ++   +++l  i  la   k ++la
  CCG91772.1 412 KEAILLGRANAMYG---LEKWSEAAELFKKFLTEYPKSREIVHVKMHLASVLEKGGEKKEALKYWQEALGSVKRTDPERQSCLEQIGILAydLKENSLA 507
                 55677778888885...788899999999999***********************************************************9789**** PP

       SPO22 180 vrvldylld 188
                 +++++++l+
  CCG91772.1 508 AETMQKVLS 516
                 *******98 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 1.3
       SPO22 252 WnkgekhykaknydeAaewyels 274
                 W  g + y +k+y+ A e++ l+
  CCG91772.1 529 WIVGQSKYDNKEYEAAKEYFSLA 551
                 77789999999999999999987 PP

  == domain 7  score: 0.8 bits;  conditional E-value: 0.42
       SPO22  37 rllyniGksllskkkyeeavkWLqraldilekqes 71 
                 +l+y i+  ll+k+k + av+++++ ++  +++e+
  CCG91772.1 601 ELYYWIASRLLQKGKLDLAVFYFKKVIQTAQSKEK 635
                 56777777777888888888888877777665554 PP

  == domain 8  score: -3.2 bits;  conditional E-value: 6.9
       SPO22 256 ekhykaknydeAaewy 271
                 + +  +kny eAa+ y
  CCG91772.1 720 DNYLAQKNYREAAKAY 735
                 6667799*****9977 PP

>> DUF4192  Domain of unknown function (DUF4192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3    0.0013      0.84     248     295 ..     208     256 ..     143     261 .. 0.88
   2 ?    3.4   0.1     0.098        65     245     302 ..     501     558 ..     466     578 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
     DUF4192 248 eaaaaerLwlalarrlpgpl.rAaalaLlAvvawarGdgalAgvaLeaA 295
                 ++ +a+++w  ++   ++p   ++al+  +++aw +G+   A   L+ A
  CCG91772.1 208 DWGHALEFWSIVLHESKDPQtKSKALTRCGWAAWKSGQAKEAEHYLTQA 256
                 56789************9999********************99888877 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.098
     DUF4192 245 lgeeaaaaerLwlalarrlpgplrAaalaLlAvvawarGdgalAgvaLeaAleadPgh 302
                 l+e++ aae++   l++    ++r  a+ +++ + + + + + A+   ++A ea+P+ 
  CCG91772.1 501 LKENSLAAETMQKVLSEYPHSSYRGVAAWIVGQSKYDNKEYEAAKEYFSLAREAEPEK 558
                 5677888888888888888889999999999999999999999999999999999984 PP

>> Clathrin_H_link  Clathrin-H-link
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.39   2.6e+02      16      28 ..      59      71 ..      57      74 .. 0.89
   2 ?    3.6   0.0     0.095        63      13      36 ..     274     297 ..     271     302 .. 0.82
   3 ?    4.1   0.1     0.067        45      15      28 ..     721     734 ..     719     739 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.39
  Clathrin_H_link 16 llaqgnykeAakv 28
                     l++qg+y+eA+k+
       CCG91772.1 59 LYRQGEYEEAIKI 71
                     789********98 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.095
  Clathrin_H_link  13 FeqllaqgnykeAakvAaespqgi 36 
                      Fe +l+q++ykeA++   + + g+
       CCG91772.1 274 FEFYLSQNRYKEAIQFYEKHKDGF 297
                      999***********9877777666 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.067
  Clathrin_H_link  15 qllaqgnykeAakv 28 
                      ++laq+ny+eAak 
       CCG91772.1 721 NYLAQKNYREAAKA 734
                      79**********96 PP

>> SRP_TPR_like  Putative TPR-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.013       8.8      45      71 ..      49      75 ..      31     118 .. 0.81
   2 ?    8.0   1.4    0.0042       2.8      25      74 ..     278     332 ..     272     354 .. 0.84
   3 ?    3.5   0.0      0.11        71      29      76 ..     391     445 ..     382     457 .. 0.72
   4 ?    1.6   1.0      0.41   2.8e+02      30     103 ..     473     555 ..     467     568 .. 0.61
   5 ?    2.7   0.5      0.19   1.2e+02      58     107 ..     688     747 ..     632     754 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.013
  SRP_TPR_like 45 edvrfEkaYvlYklkkykkalkilkkv 71
                   dv  ++a +lY+  +y++a ki+ ++
    CCG91772.1 49 ADVDLDRAIALYRQGEYEEAIKIFYRI 75
                  5788999***************99775 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0042
  SRP_TPR_like  25 iklekyeeaLkllkkgs.....alsedvrfEkaYvlYklkkykkalkilkkveae 74 
                   ++ ++y+ea+++ +k++     +  e++  + + ++  +k y kal++++ + a+
    CCG91772.1 278 LSQNRYKEAIQFYEKHKdgfieNQKENILLDLSTAYIEIKDYSKALSVIDLFLAN 332
                   6779***********99999998899999999999999**********9876555 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.11
  SRP_TPR_like  29 kyeeaLkllkkgs......alsedvrfEkaYvlYklkkykkalkilkkveaee.k 76 
                   k++ aL + +k +         e +   +a ++Y l+k+ +a++++kk+ +e  k
    CCG91772.1 391 KFTLALPIWEKLEsahsslVPKEAILLGRANAMYGLEKWSEAAELFKKFLTEYpK 445
                   5555555555555444433335667788999**************9998777545 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.41
  SRP_TPR_like  30 yeeaLkllkkgsalsedvrfEkaYvlYklkkykkalkilkkv....eaee...kvkvlksqvlYrlgsyekA..YklLskekk 103
                   ++eaL  +k ++   +++        Y lk+   a+++++kv      ++    +  +  q  Y  ++ye A  Y  L++e +
    CCG91772.1 473 WQEALGSVKRTDPERQSCLEQIGILAYDLKENSLAAETMQKVlseyPHSSyrgVAAWIVGQSKYDNKEYEAAkeYFSLAREAE 555
                   67777777777755666655556667888887766555555411004443331234577899999999*99955555555544 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.19
  SRP_TPR_like  58 lkkykkalkilkkv.....eaee..kvkvlksqvlYrlgsyekA...YklLskekkedel 107
                   l ++ +a+k l++v     e+e+  k+++l    +   ++y++A   Y +Ls   ++d +
    CCG91772.1 688 LGQFADAQKNLEEVllkepEGENnaKARMLIGDNYLAQKNYREAakaYTTLSLIYQDDTI 747
                   56666666655544222224444347788888888889999987777****999888865 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.024        16       9      26 ..      58      75 ..      57      76 .. 0.88
   2 ?    1.6   0.0      0.62   4.1e+02       5      28 ..      90     113 ..      89     115 .. 0.88
   3 ?   -0.9   0.1       3.9   2.6e+03      10      25 ..     277     292 ..     273     292 .. 0.85
   4 ?    0.5   0.1       1.4   9.5e+02      15      26 ..     428     439 ..     422     442 .. 0.86
   5 ?   -0.4   0.1       2.7   1.8e+03       8      25 ..     458     475 ..     455     478 .. 0.84
   6 ?   -0.2   0.0       2.3   1.5e+03      11      26 ..     611     626 ..     608     628 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.024
         PPR  9 gycknGkleeAlelfkeM 26
                ++ + G++eeA+++f ++
  CCG91772.1 58 ALYRQGEYEEAIKIFYRI 75
                67899**********875 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.62
         PPR   5 slIsgycknGkleeAlelfkeMke 28 
                 s+ ++y   G+ e+A+++++ +++
  CCG91772.1  90 SMADCYRLIGRKEDAIKIYQLLVQ 113
                 78999999***********98765 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 3.9
         PPR  10 ycknGkleeAlelfke 25 
                 y + ++++eA++++++
  CCG91772.1 277 YLSQNRYKEAIQFYEK 292
                 778899******9985 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 1.4
         PPR  15 kleeAlelfkeM 26 
                 k++eA elfk+ 
  CCG91772.1 428 KWSEAAELFKKF 439
                 899******985 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 2.7
         PPR   8 sgycknGkleeAlelfke 25 
                 s++ k G+ +eAl++++e
  CCG91772.1 458 SVLEKGGEKKEALKYWQE 475
                 667789999******998 PP

  == domain 6  score: -0.2 bits;  conditional E-value: 2.3
         PPR  11 cknGkleeAlelfkeM 26 
                  ++Gkl+ A+ +fk+ 
  CCG91772.1 611 LQKGKLDLAVFYFKKV 626
                 689**********985 PP

>> SLT_L  Soluble lytic murein transglycosylase L domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.35   2.3e+02       7      40 ..      52      85 ..      48      93 .. 0.85
   2 ?    2.1   0.0      0.32   2.1e+02      18      59 ..     464     511 ..     457     514 .. 0.86
   3 ?    4.6   0.7     0.055        37      18      53 ..     538     573 ..     536     575 .. 0.89
   4 ?   -1.7   0.1         5   3.3e+03      37      50 ..     683     696 ..     678     700 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.35
       SLT_L  7 alarirELralgrdaeArreWrhllkrlskeeql 40
                +l+r+  L++ g++ eA ++++ +l  ls+ ++ 
  CCG91772.1 52 DLDRAIALYRQGEYEEAIKIFYRILPLLSPGKKT 85
                799*******************999988887754 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.32
       SLT_L  18 grdaeArreWrhllkrlskee......qlalakyAkdqgWhdlaveat 59 
                 g++ eA + W+++l ++++++      +++ + +A+d +  +la e++
  CCG91772.1 464 GEKKEALKYWQEALGSVKRTDperqscLEQIGILAYDLKENSLAAETM 511
                 68899************9999999999999999999988888877776 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.055
       SLT_L  18 grdaeArreWrhllkrlskeeqlalakyAkdqgWhd 53 
                 +++ eA +e+++l +++++e++  +a +   +  ++
  CCG91772.1 538 NKEYEAAKEYFSLAREAEPEKLYLAATLMLAWIAYH 573
                 67899****************999999999887666 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 5
       SLT_L  37 eeqlalakyAkdqg 50 
                 e+q+al+++A+ q+
  CCG91772.1 683 ETQIALGQFADAQK 696
                 67889999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.58
# Mc/sec: 4109.69
//
Query:       CCG91773.1  [L=142]
Description: Biopolymer transport protein ExbD/TolR [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-25   87.4   0.0    9.6e-25   87.2   0.0    1.0  1  ExbD         Biopolymer transport protein ExbD/TolR
  ------ inclusion threshold ------
      0.042   12.1   0.0      0.049   11.9   0.0    1.0  1  DDE_Tnp_1_4  Transposase DDE domain group 1


Domain annotation for each model (and alignments):
>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   1.1e-28   9.6e-25       5     128 ..      11     134 ..       8     136 .. 0.95

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 1.1e-28
        ExbD   5 saeinltpmiDvvflLLifFlvtaklkkpe.plevdlPsssstqkeveekelirisisadgsiyldkkavsveelaqklkerkakppdkltvaikadkd 102
                 ++ + l+pmiDv+++LL fFl+t +l++ e  lev++P++++++  +  + +++i+i++dg++ l+++ vs +el++ ++ + ++ pd+  ++i+ad++
  CCG91773.1  11 QIGLQLAPMIDVILFLLSFFLLTWNLARYEaDLEVKIPKAKNGELPKRLPGEVIINITKDGQVNLNHRVVSAKELEEIIRGVIQQYPDQ-AIIIRADEE 108
                 577899**********************99667***********88888999*************************************.********* PP

        ExbD 103 vsygklvevldtlkkagiekvslvtt 128
                 +sy+++++vld +++ +  +++++t 
  CCG91773.1 109 TSYKEVIKVLDVCRAVNAWNIAFATN 134
                 ***********************996 PP

>> DDE_Tnp_1_4  Transposase DDE domain group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.5e-06     0.049     189     237 ..      70     120 ..      58     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.5e-06
  DDE_Tnp_1_4 189 pgnvdsskea..veaLarlvkrirerwpetkilvRgDSafarpellkwcee 237
                  +g+v+ ++ +  +++L+++++ + +++p++ i++R+D   + +e++k+++ 
   CCG91773.1  70 DGQVNLNHRVvsAKELEEIIRGVIQQYPDQAIIIRADEETSYKEVIKVLDV 120
                  566666666643569****************************99998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1012.13
//
Query:       CCG91774.1  [L=264]
Description: Biopolymer transport protein ExbB/TolQ [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-23   80.3   0.1    1.8e-22   79.4   0.1    1.4  1  MotA_ExbB        MotA/TolQ/ExbB proton channel family
  ------ inclusion threshold ------
      0.022   15.0   5.9      0.041   14.1   4.6    1.9  1  EI24             Etoposide-induced protein 2.4 (EI24)
       0.17   11.9   0.0       0.26   11.2   0.0    1.3  1  HIGH_NTase1_ass  Cytidyltransferase-related C-terminal region


Domain annotation for each model (and alignments):
>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.1   3.1e-26   1.8e-22       8     126 ..      99     219 ..      89     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 3.1e-26
                 HHHHHHHHH.HT-HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS.SGGCTHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB   8 rilkaglqe.klvdgaepeelrraleealsreeerlekglsilatigslaPllGLlGTVlGlieafqaladagsa.dlakvapgiaeALiaTalGlvvA 104
                 r+lk+ l+    +++a+ e+++++ e+  s   + l++++ +l  +g +aP+lGL+GTV+G++++f ++a+  s+  +  +a+g+++AL++Ta+Gl+v 
  CCG91774.1  99 RLLKEVLNFlSKHKDADLESVTSVAEAFGSGFSSLLNQRILYLLDAGVIAPMLGLFGTVVGILRSFGSIAAEPSPmRTLLLAGGVSQALVSTAIGLIVG 197
                 5555555533336788999999999999999999************************************9888888999******************* PP

                 HHHHHHHHHHHHHHHHHHHHHX CS
   MotA_ExbB 105 ipavlaynklkrkverlvlele 126
                 i a+++y++++ +v+ l++ +e
  CCG91774.1 198 ISAMFFYSFFRGRVQYLISVFE 219
                 **************99998776 PP

>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   4.6   6.9e-06     0.041      38     119 ..      15     157 ..       3     223 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.9e-06
                 H.............-.......TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.H......H............................ CS
        EI24  38 l.............w.......vllasllvllllllplwlfplvalllaapfygllaekvekrh......l............................ 82 
                 +                     +++ +l+++++l+++l+++ + +l l+a+++ +l +++e         l                            
  CCG91774.1  15 GvlaeegaskpitvLdllksggWVILPLFFISFLVVALIFYYFASLRLSAVWTKDLDRRIENALkkqdlfLvaeviknrsegcarllkevlnflskhkd 113
                 12334666665554044556678999**********************************764444444404444444445555455555555566666 PP

                 ...CCTTSHHHHHHHHHHHHHHHHHHHHH...HH.TTHHH.... CS
        EI24  83 ...glvkslaeslkslllllllllvllpl...li.Pvvglilsp 119
                    + v+s+ae++ s +  ll   +l++l   +i P++gl+  +
  CCG91774.1 114 adlESVTSVAEAFGSGFSSLLNQRILYLLdagVIaPMLGLFGTV 157
                 66644444444444444444333344444443223555544333 PP

>> HIGH_NTase1_ass  Cytidyltransferase-related C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.4e-05      0.26     149     184 ..     111     146 ..      69     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.4e-05
  HIGH_NTase1_ass 149 iekrpyesieeikeaiprgfskhykerilsvLeaki 184
                      +++++ es+  + ea   gfs+  ++ril  L+a +
       CCG91774.1 111 HKDADLESVTSVAEAFGSGFSSLLNQRILYLLDAGV 146
                      3445899*************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1023  (0.0570584); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:00.58
# Mc/sec: 1371.56
//
Query:       CCG91775.1  [L=190]
Description: Adenylate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-27   94.5   0.0    7.8e-27   94.2   0.0    1.1  1  ADK       Adenylate kinase
    1.1e-11   45.4   0.0    1.4e-11   45.0   0.0    1.1  1  AAA_17    AAA domain
    1.1e-06   29.2   0.0    1.8e-06   28.5   0.0    1.3  1  AAA_18    AAA domain
  ------ inclusion threshold ------
       0.15   12.2   0.0       0.52   10.5   0.0    1.8  1  AAA_33    AAA domain


Domain annotation for each model (and alignments):
>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   1.7e-30   7.8e-27       1     149 [.       8     167 ..       8     169 .. 0.89

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 1.7e-30
                 EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHCT-HHHHHHHHHHHTTSS--HHHHHHHHHHHHHCHGTTTEE.......EEESB-SSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
         ADK   1 llGaPgaGKGtqaeklvkkyglahlstGdllRaevksgtelGkeakevmdkgelvpdevvvklvkeelekedkkkgf.......llDGfPRtveqaeal 92 
                 l+GaPg+GKGtq + l +  g+ h s+G+l+R+ v s++ +Gk+  e+  kg lvpd+++++l ++ +++   + +f       +lDG PR+v+q + l
  CCG91775.1   8 LIGAPGSGKGTQGKILGTIPGFFHFSSGELFRS-VDSNSVIGKTFLEYSSKGLLVPDDITIQLFNSYIDQMISEGRFrpkvdylVLDGLPRNVRQWHIL 105
                 79******************************6.8999*************************99988887444333333333379************* PP

                 HHHHHHHTSEESEEEEEE--H.HHHHHHHHT.........GSHHHHHHHHHHHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  93 eelleeekvkldlvleldvpe.evlveRltg.........DneetvkkRletykkqtkplidyykkk 149
                  e     kv++ +v +l +++ ++lv+Rl g         D+ee ++kR+e y+++tkpl++ ++ +
  CCG91775.1 106 SE-----KVEILFVYHLYCSDrSILVSRLKGravqdhrvdDTEEVIRKRFEIYERETKPLLNLFSAT 167
                 99.....999*******99763689*************************************99875 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0     3e-15   1.4e-11       1     136 []       9     147 ..       9     147 .. 0.69

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 3e-15
                 EE-TTSSHHHHHHHHHHHH.TEEEEEHHHHHHHHHHTTTS.HSSHHHHCTSHHHHHHHHHHHHHHHHHHHH.......HSSEEEEEE-SEEEETTEEEE CS
      AAA_17   1 lGgPGsGKgtqceklveky.gfthlsaGdllreeakrggl.akardemrklpleekkelqkeaaekiaeea.......kkkgvlvdghprikeqagfld 90 
                 +G PGsGKgtq  k+   + gf h+s G+l+r++ +++   ++  ++ +k+ l++++ + ++    i ++        k + +++dg pr+ +q   + 
  CCG91775.1   9 IGAPGSGKGTQG-KILGTIpGFFHFSSGELFRSVDSNSVIgKTFLEYSSKGLLVPDDITIQLFNSYIDQMIsegrfrpKVDYLVLDGLPRNVRQ---WH 103
                 69**********.5555555************99887766244556677887788777777777777665312244333333677777775433...44 PP

                 SSHHHHHHHH..SEEEEEE--HHHHHHHHHHHT..TST-TS-SHHHHH CS
      AAA_17  91 glpkevleelkpdaiilleadpeeilerrlkdr..trgrdddneesik 136
                  l +    ++++ ++  l++++  il  rlk r  +  r dd+ee+i+
  CCG91775.1 104 ILSE----KVEILFVYHLYCSDRSILVSRLKGRavQDHRVDDTEEVIR 147
                 4443....4455577779999998888777775236999******997 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   4.1e-10   1.8e-06       2     125 ..       7     144 ..       6     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 4.1e-10
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.....gvnlrdvakenglllevdpe...aldeskrldedkldklldaleenssaleegknlvidghlaeleseaak 92 
                 ll G+pG+GK t +k L    gf     g+  r+v +++ +  ++ ++    l   + + ++  ++ +d++    + + + + lv+dg++ + +++   
  CCG91775.1   7 LLIGAPGSGKGTQGKILGTIPGFfhfssGELFRSVDSNSVIGKTFLEYsskGLLVPDDITIQLFNSYIDQMISEGRFRPKVDYLVLDGLPRNVRQWHIL 105
                 689**************77667788888555555555555555555551111144444444554555555555444999************99999999 PP

      AAA_18  93 dikk.....vvLtasp.eelleRlekRgyeeakikenee 125
                   k      ++L++s+ ++l  Rl+ R  ++++  + ee
  CCG91775.1 106 SEKVeilfvYHLYCSDrSILVSRLKGRAVQDHRVDDTEE 144
                 888899999***********************9876555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00012      0.52       3     135 ..       7     148 ..       6     156 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
      AAA_33   3 llvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqskt.....dytr...vldr.lyqilnelarkalsagrn.vildatnls..rrerarfl 89 
                 ll+G+pGsGK t  + l    g+++ ss +l+r +  + +  kt        +   v d+ ++q  n +++++ s+gr    +d   l+  +r+ +++ 
  CCG91775.1   7 LLIGAPGSGKGTQGKILGTIPGFFHFSSGELFRSVDSNSVIGKTfleysS--KgllVPDDiTIQLFNSYIDQMISEGRFrPKVDYLVLDglPRNVRQWH 103
                 799***********999988999999999999999998888777665330..23323333577777777777777775545556666665556667777 PP

      AAA_33  90 klarrlgvpvrivvvetdeetlkeRlakRaangddrsevpeealdr 135
                  l ++ +  +  +   +d++ l +Rl+ Ra + d+r++ +ee++ +
  CCG91775.1 104 ILSEKVEILFVYHLYCSDRSILVSRLKGRAVQ-DHRVDDTEEVIRK 148
                 77776667777777888899999999999984.7787777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1285.59
//
Query:       CCG91776.1  [L=255]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-26   91.9   0.0    5.1e-26   91.5   0.0    1.1  1  Glycos_transf_2  Glycosyl transferase family 2
    0.00021   21.2   0.0     0.0003   20.8   0.0    1.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.025   14.2   0.0      0.042   13.5   0.0    1.3  1  Glyco_transf_7N  N-terminal region of glycosyl transferase gr
      0.032   13.7   0.0      0.059   12.8   0.0    1.4  1  Glyco_tranf_2_2  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.0   1.1e-29   5.1e-26       1     167 [.      15     173 ..      15     175 .. 0.95

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 1.1e-29
                      EEEEEESS-TTTHHHHHHHHHHH...GGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaq...dpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDde 91 
                      sv+ip++Ne+++++++l+  l+q      +++eii v+D+StD  +  +   +    +v+ + ++e+ G+++a+  g+++a g+y++f+DaD++
       CCG91776.1  15 SVIIPFHNEAENIPALLT-ELDQclpALGLHVEIIMVNDASTDCYERPAATPR---FPVIWLDLTERSGQSAAMYFGISQAAGRYVAFMDADLQ 104
                      8****************9.777779999***************9999999995...8************************************* PP

                      E-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHH CS
  Glycos_transf_2  92 pdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrreale 167
                       dp +lekl+ +l+++g d++ g r +++++++++          ++ +k+r   l++n+ +  +s  ++r e+++
       CCG91776.1 105 NDPRDLEKLYYKLNEEGLDLITGLRIHRKDSWFRKISS-------KIANKIRSSLLGDNTRDTGCSLKVMRSELAK 173
                      ***********************************985.......789*******************999999876 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   6.6e-08    0.0003       3     122 ..      13     127 ..      11     196 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 6.6e-08
  Glyco_tranf_2_3   3 dlavlVptfneedvlgevlesllaq.ey.pr.vevvvvvdesdaet.levaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvl 92 
                      dl+v++p  ne++ + ++l++l  + +  +  ve++ v d s++   ++    +  ++p + +++   ++   + g s a++ +++++++++v+
       CCG91776.1  13 DLSVIIPFHNEAENIPALLTELDQClPAlGLhVEIIMVNDASTDCYeRPA---ATPRFPVIWLDL---TE---RSGQSAAMYFGISQAAGRYVA 97 
                      79*******************99995533435888877766554441443...346888874443...33...358999*************** PP

  Glyco_tranf_2_3  93 lvDdDtvvePdtlkrllqffltpkvgavgt 122
                      ++D+D   +P+ l++l   ++ ++ + +++
       CCG91776.1  98 FMDADLQNDPRDLEKLYYKLNEEGLDLITG 127
                      **********99999766657777777765 PP

>> Glyco_transf_7N  N-terminal region of glycosyl transferase group 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.4e-06     0.042      49      95 ..      14      60 ..       4      64 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.4e-06
  Glyco_transf_7N 49 vaiiipyrnreehLkillkrLhpllqrQqldykiyvieqagnetFnr 95
                       +iip++n +e++  ll++L + l    l+ +i++++ a+++ + r
       CCG91776.1 14 LSVIIPFHNEAENIPALLTELDQCLPALGLHVEIIMVNDASTDCYER 60
                     679*************************************9999887 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.3e-05     0.059       1     102 [.      15     113 ..      15     123 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
  Glyco_tranf_2_2   1 svviplraseerhyieervlqkakyy...deeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaD 91 
                      sv+ip++++ e+  i   + +  +       ++e+i+v+d S++ +          +  v + d   +  +++aa   G+s+a + +v F+DaD
       CCG91776.1  15 SVIIPFHNEAEN--IPALLTELDQCLpalGLHVEIIMVNDASTDCYERP---AATPRFPVIWLDL-TERSGQSAAMYFGISQAAGRYVAFMDAD 102
                      789999998888..55555222222233377899999999999994433...3344555544555.235699********************** PP

  Glyco_tranf_2_2  92 cfissDkfeki 102
                          +  +ek+
       CCG91776.1 103 LQNDPRDLEKL 113
                      98888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1900.49
//
Query:       CCG91777.1  [L=376]
Description: DNA polymerase III, delta subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-08   32.3   3.4    1.3e-07   31.6   3.4    1.4  1  DNA_pol3_delta  DNA polymerase III, delta subunit


Domain annotation for each model (and alignments):
>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   3.4     7e-12   1.3e-07       4     174 .]      15     196 ..      12     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 7e-12
                     EES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-HHH..HT.....TTSTTTTSSSSEEEEEEE--........TT-S-TTHHHHHHHHTTT CS
  DNA_pol3_delta   4 yGedellleeskdqilkqalkqgfedlnyikfdlnedwidd.vl.....eecetlpffsdkrivvlknpkllt...kesklnekllkeLeeylsn 89 
                      Ged +  +++  ++++ + +++     +   +  e++++  +l     ee+ t+++f+  ++++ k + +l      +k  e+++ ++ ++l++
      CCG91777.1  15 GGEDFYEAQKKARALIESFRAKDPNLEIIHIAEEGESQSEIlALlerlrEEIATPSLFATTKLIFWKGASFLSangLADKRIEEDIRQFFNLLQE 109
                     56666666666677776655555555555555555555443222222227899*******************999989999************99 PP

                     --SSEEEEEEES.S--HHHHHHHHHTTTEEEEEE---...-TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  DNA_pol3_delta  90 lpedtlLiliapkklderkklvklLkkkatvveaktl...keeelkkwiqkraqelglkiekealelLlelvennlsaikqelekLal 174
                        d l+++++ + +d+rkkl+++Lk + +v    +l   + + l + + ++++e g++ ++   ++Ll  ++ + s+++ e+ekL+l
      CCG91777.1 110 NLLDELIVVVLAESIDKRKKLFQELKAQFHVELTDKLdplDPSSLLE-VMEKLEERGIEADQSLGQQLLMESGAQRSLLDMEIEKLSL 196
                     9999999999999**************99987777774445555555.4567899*******************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2974.07
//
Query:       CCG91778.1  [L=169]
Description: HIT family hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-11   43.9   0.0    4.1e-11   43.5   0.0    1.2  1  HIT            HIT domain
    1.4e-05   25.5   0.0      2e-05   25.0   0.0    1.2  1  DcpS_C         Scavenger mRNA decapping enzyme C-term binding
     0.0072   16.2   0.1      0.013   15.4   0.1    1.6  1  GSAP-16        gamma-Secretase-activating protein C-term
  ------ inclusion threshold ------
       0.02   15.1   0.0      0.045   13.9   0.0    1.6  1  CRIC_ras_sig   Connector enhancer of kinase suppressor of ras
      0.027   14.3   0.0      0.046   13.6   0.0    1.4  1  CwfJ_C_1       Protein similar to CwfJ C-terminus 1
       0.11   12.2   0.0       0.13   12.0   0.0    1.2  1  GalP_UDP_tr_C  Galactose-1-phosphate uridyl transferase, C-te


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   1.4e-14   4.1e-11       7      96 ..      37     127 ..      31     129 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 1.4e-14
                 CEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SS.SS-EEEEEEC- CS
         HIT   7 tvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsv.ahlHiHviprr 96 
                  v+ + + ++ +l+  p    h+ v+p + ++ +++lt+ e+ + + + ++++k +qk f+  g++v  n+ga+ag  +  hlH+H++pr 
  CCG91778.1  37 FVLTRGKTTFSLLNRYPYNTAHCMVVPYRIIKSITELTDTEMLECFHTLNRLCKSIQKLFSPHGFNVGLNVGAAAGAGIeSHLHWHLVPRW 127
                 5566667788999****************************************************************9946********85 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   6.7e-09     2e-05       2     100 ..      22     124 ..      21     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 6.7e-09
                 -HHHHHHTTSS.-B-EEEE-.SSEEEEE-SS-SSSEEEEEEESS---SGGG-.-TTTTTHHHHHHHHHHHHHHHTT-T-EEEEE--SCCCT-.-S-S-- CS
      DcpS_C   2 wvfnilakgke.pervvyed.ekfvvlkDikpkaklhllvipkrdikslrdL.tkehlpllkemrekakkvieekynevdaeelrvgvhyqP.svyhlH 96 
                 ++f+i+a+  + ++++v+   +++  l   +p ++ h++v+p+r iks+++L ++e l+   ++++  k++ +   +++    l+vg  +     +hlH
  CCG91778.1  22 HLFEIIAQSSDdEKNFVLTRgKTTFSLLNRYPYNTAHCMVVPYRIIKSITELtDTEMLECFHTLNRLCKSIQKLFSPHGFNVGLNVGAAAGAgIESHLH 120
                 5688888887756677765558888888999*********************44456788888888888888888888899999999999996678*** PP

                 EEEE CS
      DcpS_C  97 lHvi 100
                  H++
  CCG91778.1 121 WHLV 124
                 **97 PP

>> GSAP-16  gamma-Secretase-activating protein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   4.4e-06     0.013      20      55 ..      66      99 ..      17     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.4e-06
     GSAP-16 20 llelidelksseelalFhllerllealeelafPlPp 55
                 +++i+el+++e l+ Fh+l+rl++++++l  P  +
  CCG91778.1 66 IIKSITELTDTEMLECFHTLNRLCKSIQKLFSP--H 99
                3459**************************976..4 PP

>> CRIC_ras_sig  Connector enhancer of kinase suppressor of ras
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.5e-05     0.045      49      87 ..      39      76 ..      37      81 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
  CRIC_ras_sig 49 itaakallswLdRypfsqlsdfsatrnkiiklcleLtti 87
                  +t  k+ +s+L+Ryp ++ + +++    iik  +eLt++
    CCG91778.1 39 LTRGKTTFSLLNRYPYNTAHCMVVPYR-IIKSITELTDT 76
                  6889**************999988888.********986 PP

>> CwfJ_C_1  Protein similar to CwfJ C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.6e-05     0.046      20     108 ..      30     125 ..      25     136 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
                 SS---SS--S-B-SSEEEE---S-SSTT-EEEEESS--SSTTSS-H....HHHHHHHHHHHHHHHHHHHTT--EEEEEE-...SSS-----EEEEE CS
    CwfJ_C_1  20 npklekhlivsignkvYlalpkgpLssgHvliipieHisallslde....evldeirkfrkalvkmykkqdkdavvfEis...sersvHlaiqvip 108
                 +++ ek+ +++ g++++  l + p +  H++++p   i++ ++l +    e    +++  k++ k+++  + ++ +   +      ++Hl+++++p
  CCG91778.1  30 SSDDEKNFVLTRGKTTFSLLNRYPYNTAHCMVVPYRIIKSITELTDtemlECFHTLNRLCKSIQKLFSPHGFNVGLNVGAaagAGIESHLHWHLVP 125
                 66789999999***************************9999988866777778899999999999887665542222222345566677777776 PP

>> GalP_UDP_tr_C  Galactose-1-phosphate uridyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.3e-05      0.13      53     121 ..      59     126 ..      11     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.3e-05
                    EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EEEEEE---SCCCTTTT--EEEEE-- CS
  GalP_UDP_tr_C  53 vlllrkaevkslaeladeekedlaailkklarkydnlfetsfeysmGlhqaplnaeednswlHaHfevp 121
                     ++++ + +ks++el+d+e  +   +l+ l +    lf+    + +Gl   + ++   +s lH H+ ++
     CCG91778.1  59 CMVVPYRIIKSITELTDTEMLECFHTLNRLCKSIQKLFS-PHGFNVGLNVGAAAGAGIESHLHWHLVPR 126
                    48899999******************************7.67899999666666666699999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1105.98
//
Query:       CCG91779.1  [L=300]
Description: ATP phosphoribosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-39  133.7   0.0    7.9e-39  133.2   0.0    1.2  1  HisG      ATP phosphoribosyltransferase
    6.1e-25   87.2   0.1    1.3e-24   86.1   0.1    1.6  1  HisG_C    HisG, C-terminal domain
    0.00037   20.5   0.0    0.00058   19.9   0.0    1.3  1  NMT1      NMT1/THI5 like
  ------ inclusion threshold ------
      0.065   12.2   0.1      0.087   11.8   0.1    1.2  1  Rif1_N    Rap1-interacting factor 1 N terminal


Domain annotation for each model (and alignments):
>> HisG  ATP phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.0   1.8e-42   7.9e-39       1     155 [.      60     213 ..      60     221 .. 0.92

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 1.8e-42
                 -GGGHHHHHHTTSSSEEEEEHHHHHHCT...TEEEEEEESESE.....EEEEEEEETTSS--SGCGG.TT-.EEEEES-HHHHHHHHHHTT-EEEEEE- CS
        HisG   1 raadiptyVeegavdlGitGkDvveEskeeeeveelldLgfgk.....cklvvavpeesevkslkdlvedkgkriaTsypnlakkyfeekglkveiikl 94 
                 r+++i++yVe+g +d+GitG+D++ E++  ++v+ +++L + k     +k+v+av+e+s++++ +dl   +gk iaT+ +n++k+y+++ g+++++  +
  CCG91779.1  60 RPQEIARYVEQGFLDCGITGRDWILENH--ADVHVICELRYNKttsapVKWVLAVHENSPIQKPTDL---QGKWIATEAVNMVKQYLKRIGVEAHVEFS 153
                 89************************74..57***********999999*************99988...678************************** PP

                 SS-CTHHHHTTS-SEEEEEESSSHHHHHTTEEEEEEEEEEEEEEEEEHHHHHSHHHHHHHH CS
        HisG  95 sGsvEaapalglaDaIvDlvetGeTLrangLkaietilessavLiankkslkkkekieell 155
                 +G++E++++  l+DaIvD++etG++Lran+L++++tiles  ++i++++ +++kek ++l+
  CCG91779.1 154 WGATEVKVPE-LVDAIVDITETGSSLRANHLRIVDTILESYPQFICSHAVWENKEKRKKLT 213
                 *********9.9************************************9999555444443 PP

>> HisG_C  HisG, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.1   2.9e-28   1.3e-24       1      73 []     225     297 ..     225     297 .. 0.99

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 2.9e-28
                 TTTEEEEEEEEEGGGHHHHHHH---SSS-EEEE-.SS-EEEEEEEEECCCHHHHHHHHHCTT-EEEEEEE-S- CS
      HisG_C   1 ArkyvllmynvpkesleevlkilPGlrsPTvspladegwvaVsavveekevaevideLkaaGAsdIlvlpiek 73 
                 Ar++v l++nvpke+l+++lkilP+lr+PTvsplad +wvaV+++ +e+ v+e+ ++Lk++GA++I++++++k
  CCG91779.1 225 ARNKVGLKMNVPKENLNAILKILPALRNPTVSPLADCQWVAVETILDESSVRELAPRLKEMGAEGIIEYSLNK 297
                 89*******************************************************************9986 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.3e-07   0.00058      18     118 ..      51     151 ..      35     182 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.3e-07
                 HTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--E....EEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHH CS
        NMT1  18 eeGldVeivepadpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqepls....glivlkdsgikspkDLkGkrigyvgspfekallkall 112
                 +e l+V++v p++     ++v++g  d g++  + +l + +++++v +  ++++++       l+v+++s+i++p+DL+Gk i++   +  k+ lk++ 
  CCG91779.1  51 DEELEVRLVRPQE---IARYVEQGFLDCGITGRDWIL-ENHADVHVICELRYNKTTSApvkwVLAVHENSPIQKPTDLQGKWIATEAVNMVKQYLKRIG 145
                 799*******988...99*************998887.777889999988888776542222356888888*************999776666666665 PP

                 HHTT-- CS
        NMT1 113 akdggd 118
                  +++++
  CCG91779.1 146 VEAHVE 151
                 555554 PP

>> Rif1_N  Rap1-interacting factor 1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   1.9e-05     0.087     127     191 ..     158     226 ..     133     249 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHTTCCS--.----HHHHHHHHHHHHHHHHHSHHHHHHTHHHHHH.......HHHHHHHHHHHTTT CS
      Rif1_N 127 servkrllsalenieervkgksiiaerlniyrrLleqapslmlahaelWlp.......dlfsgllssvkdir 191
                 + +v +l++a+ +i+   +g s+ a+ l+i+ ++le +p+   +ha  W +       + +  ll+s+ + r
  CCG91779.1 158 EVKVPELVDAIVDIT--ETGSSLRANHLRIVDTILESYPQFICSHAV-WENkekrkklTSMALLLQSALNAR 226
                 44899**********..56889*************************.*87666666655555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2149.04
//
Query:       CCG91780.1  [L=320]
Description: D-alanyl-D-alanine carboxypeptidase (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-43  146.8   0.0    9.7e-43  146.3   0.0    1.1  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase
    7.7e-08   32.2   0.0    1.1e-07   31.7   0.0    1.2  1  Beta-lactamase2  Beta-lactamase enzyme family
    2.4e-06   26.6   0.0    3.1e-05   22.9   0.1    2.0  2  Peptidase_S13    D-Ala-D-Ala carboxypeptidase 3 (S13) family
    0.00045   19.5   0.0    0.00067   18.9   0.0    1.4  1  Transpeptidase   Penicillin binding protein transpeptidase do


Domain annotation for each model (and alignments):
>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.3   0.0   2.2e-46   9.7e-43      11     234 ..      74     287 ..      66     293 .. 0.90

  Alignments for each domain:
  == domain 1  score: 146.3 bits;  conditional E-value: 2.2e-46
                    -SSSEEEEEETTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCSGTTSSTTS-TTT-EEEHHHHHHHHHCC--H CS
  Peptidase_S11  11 iaaksailvdantGkvLyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgnnkevsniflkkgskvsvkdLlegllvssgN 106
                    ++a   +l da++ kvL ++n+d   ++AS tKlmTa++ ++ +       +  v+i ++    +     s+++l +g+ v v++L+e ll+ s N
     CCG91780.1  74 VQASGVLLYDATSHKVLFARNEDVPYAPASTTKLMTALVAYDKT-----AFKGSVRIKREDTLVQ----PSHVPLIAGEIVPVNQLIEELLIGSCN 160
                    789999***********************************999.....6666777766555444....89************************* PP

                    HHHHHHHHHHHSSHHHHHHHHHHHHHHTT-TT-B-SSSSSTSHTTCBB-HHHHHHHHHHHHHH.HHHHHHGGGESEEEETTECTEEEESSTGGGGT CS
  Peptidase_S11 107 dAavalAekiaGsekaFvkmMnkkakelGlkntkfvnptGLdnenqvssArdlailakallkd.lpeelkitkeksltfngikklnyknknkllyr 201
                    dAa alA + +Gs ++Fv+ Mn+ka +lG +nt+fvnp+GL +++q+ +A+dl ++ +a++k+  ++++  t++ +++  gi  +   n+n+ll +
     CCG91780.1 161 DAALALARYCSGSVEKFVEEMNQKAASLGCRNTHFVNPHGLFEPGQYTTAQDLMRIFQAAIKNpIINQICQTRKIHFQNGGISRV-MYNHNRLLGS 255
                    ***************************************************************999*999999999887666555.5699999998 PP

                    TTSEEEEEEEEEETTTEEEEEEEEEETTEEEEE CS
  Peptidase_S11 202 ktlnvdglktGytkkAgeclvatavenqmrlis 234
                    +   +   ktG+t    ++  a+  +n+  l +
     CCG91780.1 256 YM-GMGPAKTGWTRISLHTYAASCERNGHTLYL 287
                    87.999******************999988766 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   2.4e-11   1.1e-07       6     149 ..      90     229 ..      85     272 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 2.4e-11
                      EEEESTTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHHHTSSSTSGGGSTTSEEEHHHHHHHHHHTT-HHHHHHHHHHH.....T.H CS
  Beta-lactamase2   6 elgvnadeefpaaStiKvpillalleavlegklslderltltaedivggsgilqklpgktlslrdlltlmiavSDNtAtnlLidrl.....g.l 93 
                      +++ n+d ++  aSt K++ +   l a +++ ++   r++ ++  +v  s+     +g  +++ +l+++ ++ S N A+ +L +++       +
       CCG91780.1  90 LFARNEDVPYAPASTTKLMTA---LVAYDKTAFKGSVRIKREDT-LVQPSH-VPLIAGEIVPVNQLIEELLIGSCNDAALALARYCsgsveKfV 178
                      5799***************99...44444444444444443333.444444.23345778**************************99998779 PP

                      HHHHHHHHHCTHTTSB--SHTTCCHHHTTSSTTEE-HHHHHHHHHHHHHTTSSHHH CS
  Beta-lactamase2  94 eavnawlkelglretrlrrklpdleaadkdkrntttardlarllealargellspe 149
                      e++n+ +++lg+r+t++ ++   +e     +  +tta+dl+r+++a +++ ++++ 
       CCG91780.1 179 EEMNQKAASLGCRNTHFVNPHGLFE-----PGQYTTAQDLMRIFQAAIKNPIINQI 229
                      9*******************99996.....69**************9999999983 PP

>> Peptidase_S13  D-Ala-D-Ala carboxypeptidase 3 (S13) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   6.9e-09   3.1e-05      17      56 ..      75     114 ..      65     119 .. 0.90
   2 ?    1.5   0.0     0.022        97     265     381 ..     138     247 ..     117     268 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 6.9e-09
                    SEEEEEEEETTTTEEEEEESTTSEB--GGGHHHHHHHHHH CS
  Peptidase_S13  17 avagvvvqdaetgkelydhqgdtpllPAStqKllTAaaAl 56 
                    + +gv+  da++ k+l+ +++d+p  PASt Kl+TA+ A 
     CCG91780.1  75 QASGVLLYDATSHKVLFARNEDVPYAPASTTKLMTALVAY 114
                    678999*******************************996 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.022
                    EEEEEEECEHHHHHHHHHHHT-HHHHHHHHHHHHHHHCS-BSHHHHHHHHHHHHHHTT--CTTSB-S-SSS-ST.T-BBEHHHHHHHHHHHHCTCC CS
  Peptidase_S13 265 vlashqSaPLsellkkmmkkSdNliAesllrevakeikrpgsfeagldavrerLskagidtanlvLeDgSGLSr.knlvtaktlaqlLeaiadqpa 359
                    +l + +  P  +l+ +++  S N  A +l r         gs e+ ++ ++++ +++g    n+  ++  GL       ta+ l+ + +a+ ++p 
     CCG91780.1 138 PLIAGEIVPVNQLIEELLIGSCNDAALALARYCS------GSVEKFVEEMNQKAASLGC--RNTHFVNPHGLFEpGQYTTAQDLMRIFQAAIKNPI 225
                    5666666677777777777777777777777766......7777777777777755554..56666788888662466789999999999999999 PP

                    HHHHHHCS-BTTTSGGGTTSST CS
  Peptidase_S13 360 lqalldsLPvAGesGtlenrfk 381
                     +++ ++  +  ++G +++ + 
     CCG91780.1 226 INQICQTRKIHFQNGGISRVMY 247
                    9999998888777777777666 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.5e-07   0.00067      42     116 ..      98     181 ..      77     294 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.5e-07
                     -BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS..ECTCCCC-SSSSEEEHHHHHHTT-HHHHHHHHH...........HH CS
  Transpeptidase  42 qyePGStfKvvtaaaaleagvikpdetlddsggkiqggqs.ikdweqdnkgsegitlrealekSsntyfvklaq...........kl 116
                      y+P+St K +ta+ a+++ ++k++ ++++++  +q++ + + + e+      ++ ++e l+ S+n +   la+           ++
      CCG91780.1  98 PYAPASTTKLMTALVAYDKTAFKGSVRIKREDTLVQPSHVpLIAGEIVP---VNQLIEELLIGSCNDAALALARycsgsvekfveEM 181
                     7*******************************99999887744444443...23467788888888777777754555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2237.60
//
Query:       CCG91781.1  [L=268]
Description: Undecaprenyl-diphosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-65  220.7  14.5    3.1e-65  220.5  14.5    1.0  1  BacA      Bacitracin resistance protein BacA


Domain annotation for each model (and alignments):
>> BacA  Bacitracin resistance protein BacA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.5  14.5   1.7e-69   3.1e-65       2     256 .]       8     256 ..       7     256 .. 0.90

  Alignments for each domain:
  == domain 1  score: 220.5 bits;  conditional E-value: 1.7e-69
        BacA   2 iilGivqGltefLPvSSsGhlilveellglekedlllfdvvihlGtllAvlvlfrkdilrllkgllkslkkkkkekeelrlllliivatipaailglll 100
                 i+lGi++G++efLP+SS+Ghl+++e+++g  k+  ++f+++i+lG++lAv++++ +++ ++++     +k+    ke++ ++l++ +a+ ++a+lgl +
  CCG91781.1   8 ILLGIIEGISEFLPISSTGHLLIAEHWMGE-KS--ETFNIFIQLGAVLAVCLIYKERVSSFFFL----WKN----KEKIPYFLKLGLAFFITALLGLWV 95 
                 89**************************64.33..78*********************994443....333....46789999**************** PP

        BacA 101 kdlieellrsplvvaialivtglllllaeklrkkkkksledltlkdalliGlaQalA.llPGvSRSGaTivaglllglsreaaaefSFllaiPailgag 198
                 k++  el +++  v+ia++ ++++++++ek++ ++++ +ed+++ +a+ +G+ Q++A +lPG+SRS+aTi++++l+g+sr aa+ef+Fll+iP++++a+
  CCG91781.1  96 KKMGWELPKDLGPVIIAIFGGAFWIYFVEKVSCRNQSFVEDISWLTAIAVGVSQVVAgVLPGFSRSAATILMAVLFGVSRPAATEFAFLLGIPTMFAAS 194
                 *99999999********************9999999999************************************************************ PP

        BacA 199 llkllksa..ealtaselll..lvgfvvafvvallaikfllkllkkkklkvFaiYrivlGll 256
                 l++ ++++   ++  ++  l  ++gf+v+++va++a+k+ll++++++++ +F++Yr+ lGl+
  CCG91781.1 195 LFSWVEQTnfLKVPPTDPPLtlFLGFFVSAIVAFIAVKWLLSFIQTHTFIPFVWYRVGLGLI 256
                 ***877765533334444445577************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       857  (0.0477997); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1641.83
//
Query:       CCG91782.1  [L=82]
Description: hypothetical protein MFUM_210021 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 587.85
//
Query:       CCG91783.1  [L=157]
Description: hypothetical protein MFUM_210022 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-05   24.7   0.0    2.5e-05   24.1   0.0    1.3  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain


Domain annotation for each model (and alignments):
>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.4e-09   2.5e-05       5      69 .]       7      71 ..       5      71 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.4e-09
  OrfB_Zn_ribbon  5 keqleykakeyGikveevnpayTSktCseCgsknkealsgrtfkCpnCgfeadrDvnAaiNilkr 69
                    +e++      +G   e++npay+S    + g+++ ++  g++f+C   g+   +D ++a+N+ +r
      CCG91783.1  7 QERIDFLESAEGFRREKANPAYSSMALMRSGYVHPKNCRGDRFVCLLGGYASYADGVGAYNLKER 71
                    566666667789999***********************************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1406.22
//
Query:       CCG91784.1  [L=369]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2809.88
//
Query:       CCG91785.1  [L=221]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0017   18.8   0.4     0.0017   18.8   0.4    2.4  2  SUKH_6      SMI1-KNR4 cell-wall
  ------ inclusion threshold ------
      0.023   15.1   8.9        0.5   10.8   8.9    2.4  1  SMI1_KNR4   SMI1 / KNR4 family (SUKH-1)
        0.2    9.9  18.4       0.24    9.6  18.4    1.1  1  Nop14       Nop14-like family
       0.33    9.2  14.3       0.41    8.9  14.3    1.1  1  CDC45       CDC45-like protein


Domain annotation for each model (and alignments):
>> SUKH_6  SMI1-KNR4 cell-wall
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.4   3.7e-07    0.0017       7      65 ..      37      95 ..      35     143 .. 0.70
   2 ?   -3.1   4.4       2.3     1e+04      46      46 ..     179     179 ..     134     216 .. 0.57

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.7e-07
      SUKH_6  7 aEkelgvkLPedYkeflkeynggefggnefigsseesivndaleilldegkeeeksefd 65
                + +++g+++PedY +flk   g   +g  f++ ++e+++ + +  l +e+    + e++
  CCG91785.1 37 VKEKYGIEIPEDYLDFLKVADGFAHNGVVFFSTDHERDEFQVIPGLISENLAIGTFEQN 95
                56799*************************99999999988887777776655554444 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.3
      SUKH_6  46 n 46 
                 +
  CCG91785.1 179 E 179
                 1 PP

>> SMI1_KNR4  SMI1 / KNR4 family (SUKH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   8.9   0.00011       0.5       9      58 ..      36     178 ..      34     216 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
                 HHHHHHTS---HHHHHHHHHHTSEEEEETTSEEETTEEEEEE-THHHHS.................................................. CS
   SMI1_KNR4   9 efekdlgikLPndyreflkltnGgelfgesnglifglkllsldeieeer.................................................. 57 
                 ++++++gi +P+dy +flk  +G   f ++     g  ++s d  ++e+                                                  
  CCG91785.1  36 QVKEKYGIEIPEDYLDFLKVADG---FAHN-----GVVFFSTDHERDEFqvipglisenlaigtfeqnkdylilgysnlfwyayhfptnkylaldeedl 126
                 6889*******************...3333.....4456666665555555555555556677777777778888888888888888888888888888 PP

                 .................................................... CS
   SMI1_KNR4  58 ...................................................e 58 
                                                                    e
  CCG91785.1 127 qevvefkdfddmmtsvlkyealemtdeedeegeedeseeslyteeilieewE 178
                 8888888888888888888888887777777776555555555555554441 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  18.4   5.4e-05      0.24     353     433 ..     130     212 ..      90     220 .. 0.38

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 5.4e-05
       Nop14 353 ddfeedddlveseseeee..eeeeedeeeeedeeeee.eeeededdlsdleseeeeeedeleeelleeekkaaeekkekkkkkk 433
                  +f++ dd   s  + e    ++eedee eede+ee+   ee   ++ ++e+ee +e+ e ++e+l+ee++++e++k++ k++k
  CCG91785.1 130 VEFKDFDDMMTSVLKYEAleMTDEEDEEGEEDESEESlYTEEILIEEWEEEEEEIDEKAEADKEKLKEEDSSKEQEKQN-KQEK 212
                 2222222222222222222123333333333333333222222222222222222222222222222222111111111.1111 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  14.3     9e-05      0.41     102     194 ..     127     213 ..      93     220 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 9e-05
       CDC45 102 erivvfDDgdieeeleeereayealeeeeesdeedeeeeeeddd........deeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrr 192
                 +++v f D d   ++ ++  +yeale  +e+dee  ee+e++++        +       e +ee+ee de+ +  k+k   +ee +s++++e+++k++
  CCG91785.1 127 QEVVEFKDFD---DMMTSVLKYEALEMTDEEDEEG-EEDESEESlyteeiliE-------EWEEEEEEIDEKAEADKEK--LKEE-DSSKEQEKQNKQE 211
                 4555565555...5666667899998888887544.33333333222222211.......1111111111111111111..1111.1222222222222 PP

       CDC45 193 rs 194
                 ++
  CCG91785.1 212 KK 213
                 22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2342  (0.130626); expected 358.6 (0.02)
Passed bias filter:                      689  (0.0384294); expected 358.6 (0.02)
Passed Vit filter:                       135  (0.0075297); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 1634.53
//
Query:       CCG91786.1  [L=420]
Description: gamma-glutamyl phosphate reductase (GPR) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-13   50.3   0.2    2.5e-08   32.9   0.0    2.1  2  Aldedh    Aldehyde dehydrogenase family
      0.007   16.0   0.0      0.015   14.9   0.0    1.4  1  DUF762    Coxiella burnetii protein of unknown function (DUF7
  ------ inclusion threshold ------
       0.13   11.7   0.0       0.22   10.9   0.0    1.3  1  DUF1487   Protein of unknown function (DUF1487)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   4.1e-12   2.5e-08      29     295 ..       6     285 ..       2     296 .. 0.88
   2 !   15.4   0.0   8.7e-07    0.0052     374     437 ..     320     382 ..     306     410 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 4.1e-12
                 HHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHH..HH---HHHHHHHHHHHHHHHHHHHHHHHHHSEEE.........EEE.C CS
      Aldedh  29 edvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletl..etGkplaearaeveeaidvlryyaelaeklegev.........lps.s 115
                 e+++  +++Akea +  ++l+ e+  + L ++ + l++rk  +  +  +  +  k +  ++a +++     + +++l++ le+ v         +++ +
  CCG91786.1   6 EQIQGLCRRAKEASRLLSELSTEKINQALIAIGEELQTRKTVILSANDRdiDSAKIMGLSEAIIDRLFLGEKRFTALLKSLEDIVllpcpigetIEQwK 104
                 7899999***********************************99998761256899999999******99999**9*9999996666666655544433 PP

                 ..TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT....TS-TTSEEE--SSTCCHHHHHHH-TT.ES CS
      Aldedh 116 ..egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea....glPkgvlnvvtgsgsevgealvehpe.vd 207
                   +g l+  +r P+Gv+g+I  ++   ++++ ++a +l  GN+ +l+  +e+  +   l+ +++e     ++ ++++ ++++++++    l+++++ +d
  CCG91786.1 105 rpNGILIKKVRVPIGVIGII--YESRPNVTVDSAALCLKSGNVAILRGGTEAFNTNKELVTAIREGlrktNIAEDAVILIPTTDRQSIPILCAQRDfID 201
                 7789999999**********..89*************************9999999888888777444449999*********9999999996665489 PP

                 EEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT CS
      Aldedh 208 kvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakk 295
                 ++   G+    + ++++a+    +v+    G  ++ ++++a ++ka++ ++++ +     vC a++ llv e+i+ +f+  +v ++++
  CCG91786.1 202 LLIPRGGKGLIETVMNNAK---VPVIKHYQGICHVYIHSEASFEKALDIVLNAKC-QRPAVCNAMETLLVDEKIASDFLPLIVSELQN 285
                 *******************...89***********************99998765.5679*******************999988876 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 8.7e-07
                 EEEEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB- CS
      Aldedh 374 VlsvikfkdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfg 437
                 +ls+  +++++eai+   +     + +++t+d++ ae + ++++   vy+N st+++     fg
  CCG91786.1 320 ILSIKIVSNLDEAINHIHQYGSNHSDAIVTEDPAAAEAFLHKIDSAAVYWNASTRFTDGF-EFG 382
                 899999***********************************************7776655.555 PP

>> DUF762  Coxiella burnetii protein of unknown function (DUF762)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.4e-06     0.015      19      78 ..     159     218 ..     152     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.4e-06
      DUF762  19 te.ektLqeWlrGankqekasvfiaskekektpiladqrdvsdasLpkveiddsikavkne 78 
                 +e    ++e lr +n  e+a + i   +++++pil  qrd  d+ +p+      i +v n+
  CCG91786.1 159 KElVTAIREGLRKTNIAEDAVILIPTTDRQSIPILCAQRDFIDLLIPRGGK-GLIETVMNN 218
                 4445679*********************************99998887554.455555555 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.7e-05      0.22      10      59 ..     235     285 ..     227     293 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.7e-05
     DUF1487  10 ifedgDlnsalealve.slkePfaegavatvlveesirdefvervrsklkp 59 
                 i  ++  ++al+ +++ + + P  ++a+ t+lv+e+i+ +f+ ++ s+l++
  CCG91786.1 235 IHSEASFEKALDIVLNaKCQRPAVCNAMETLLVDEKIASDFLPLIVSELQN 285
                 677888999999887626899************************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 2892.39
//
Query:       CCG91787.1  [L=269]
Description: Glutamate 5-kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-32  111.7   0.1    4.5e-32  111.6   0.1    1.0  1  AA_kinase  Amino acid kinase family
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.28   11.2   0.0    1.5  1  NCD1       NAB conserved region 1 (NCD1)


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.1     5e-36   4.5e-32       2     240 ..       5     231 ..       4     232 .. 0.91

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 5e-36
                 EEEEEE-TTCCCCTCC....HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHT CS
   AA_kinase   2 rvVvKlGGssltdkee....aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaa 96 
                 r V+KlG  +l++ e+      +++l +q+ ++k++++++++V++g ++  g+  l  g+s+++++            +++ + + +lg+  +++ +++
  CCG91787.1   5 RWVIKLGTGVLSTREGsldlPQMENLTKQLVEIKKKNIDVIIVSSG-AISCGMDIL--GYSKRPEN------------IEELQTCSTLGQPYLMHYYKQ 88 
                 89**********88888*****************************.999999999..99999999............5666***************** PP

                 THGEEEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT.-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCC CS
   AA_kinase  97 glpavglsaaaldateagrdegsdgnvesvdaeaieelleag.vvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvp 194
                 +++a+g ++a+l++t ++     +  ++++ ++ +e+ll ++ ++p+++++++++ e+   +g++D++++++A++ +A +li l++V G++d+ + k++
  CCG91787.1  89 LFSAHGFHVAQLLVTYFDL---DSLSLRKNIKKLLENLLLKKtIIPIINENDCVSYEEIR-FGDNDRLSSHIAVLAEAQRLIMLSNVAGLMDCSNGKNK 183
                 *******************...*****************7755*********99999886.9************************************6 PP

                 TTCECCEE..EHHHCHH.CSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 195 darllpei..svdeaee.saselatgGmkvkhpaalaaarrggipvvIt 240
                     ++ei  ++++++e + se + gGm++k++aa  a  +g i + I+
  CCG91787.1 184 MISYVEEIdsTIEKLAEgTRSERSVGGMITKIEAAKIAQASG-ILTQIA 231
                 66777777766777777***************9987666665.877776 PP

>> NCD1  NAB conserved region 1 (NCD1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.1e-05      0.28       2      39 ..      65     102 ..      64     109 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.1e-05
        NCD1   2 PstlselqlyrvLqranLlqYydvliaqGGDdveqlle 39 
                 P++  elq+   L +  L++Yy++l +  G  v qll 
  CCG91787.1  65 PENIEELQTCSTLGQPYLMHYYKQLFSAHGFHVAQLLV 102
                 8999*****************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1947.90
//
Query:       CCG91788.1  [L=278]
Description: Nucleoside-diphosphate-sugar epimerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-07   31.3   0.0    2.8e-07   30.2   0.0    1.7  1  Epimerase        NAD dependent epimerase/dehydratase family
    3.8e-07   30.4   0.0    6.1e-07   29.7   0.0    1.3  1  TrkA_N           TrkA-N domain
    0.00026   20.7   0.0    0.00044   19.9   0.0    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA
     0.0032   17.7   0.0     0.0054   17.0   0.0    1.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.008   16.2   0.0      0.013   15.6   0.0    1.3  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.011   16.6   0.0      0.018   15.9   0.0    1.4  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
      0.014   14.7   0.0      0.027   13.8   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.017   14.7   0.0      0.028   14.0   0.0    1.3  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
      0.024   14.0   0.0      0.048   13.1   0.0    1.5  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
      0.037   13.0   0.0       0.98    8.4   0.0    2.2  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
      0.057   14.1   0.1       0.14   12.8   0.1    1.8  1  PglD_N           PglD N-terminal domain
      0.079   12.5   0.0       0.11   12.0   0.0    1.2  1  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.9e-10   2.8e-07       1     136 [.       5     126 ..       5     205 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.9e-10
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnll 99 
                 +l++G  G+iG+ ++k l++k++evig+ + + ++n+ ++  +    ld+td+++l+ l k   + avi        + + e+p +f ++  +g  n l
  CCG91788.1   5 VLIVGC-GYIGKLVAKSLQQKNQEVIGVVKSQGSKNRLQQLGIPAFALDITDHNSLNSLPK---FSAVIFS-----ASSNREEPLAFEKIFSIGLDNAL 94 
                 577887.************************888888888888****************99...4555555.....26888999**9999999999999 PP

                 HHHHHHTCTEEEEEEEGGGGTSCSSS.SBSTCSTTS-- CS
   Epimerase 100 eaarkagvkrllflsSsevYGkdaeq.pkeettltgpl 136
                   a+ +    +l +sS+++Y   + q  +ee++    +
  CCG91788.1  95 RIAKNC---PFLLVSSTSLYTHTEGQwVDEESLA---T 126
                 999855...67**********9999734777772...2 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   4.1e-10   6.1e-07       1      59 [.       5      63 ..       5      82 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 4.1e-10
                EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTT CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeevLeeag 59
                ++i+G+G +G+ +a+ L++++++v+++ k++   ++l++ g++++  d td + L ++ 
  CCG91788.1  5 VLIVGCGYIGKLVAKSLQQKNQEVIGVVKSQGSKNRLQQLGIPAFALDITDHNSLNSLP 63
                68*****************6657*******************************98754 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.9e-07   0.00044       1      41 [.       5      46 ..       5      71 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.9e-07
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGl 41
                ++i+G+G iG l+a +L++++++v+ +++s+   ++l++ G+
  CCG91788.1  5 VLIVGCGYIGKLVAKSLQQKNQEVIGVVKSQgSKNRLQQLGI 46
                68*****************************88888999886 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.6e-06    0.0054       1      68 [.       5      64 ..       5      84 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.6e-06
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHT CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallk 68
                     vli+G+G++G+ va+ l+++++    i v+  + +k  + +   ++  + a ald+ ++ + L +l k
       CCG91788.1  5 VLIVGCGYIGKLVAKSLQQKNQE--VIGVVKSQGSK--NRL---QQLGIPAFALDITDHNS-LNSLPK 64
                     89******************998..56666665555..333...56788899999999998.887644 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   8.7e-06     0.013      15      87 ..       5      77 ..       2      90 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.7e-06
                  EEEES-SHHHHHHHHHHHCCT-CEEEEEES..SHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS CS
  Shikimate_DH 15 vlliGaGemaelvakhLlakgvkkvvvaNR..tlerakelaeelkgeeiealkleelkellaeadvvisatasee 87
                  vl++G G +++lvak L +k+ + + v+    + +r ++l   + +  + +++ ++l++l + + v++sa + +e
    CCG91788.1  5 VLIVGCGYIGKLVAKSLQQKNQEVIGVVKSqgSKNRLQQL--GIPAFALDITDHNSLNSLPKFSAVIFSASSNRE 77
                  9********************9999998651134445555..445566678888888877777788888777654 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9   0.0   1.2e-05     0.018       3      67 ..       5      69 ..       4      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
                  EEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE....EESSHHHHHTCTTESEEE CS
  GFO_IDH_MocA  3 vaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve....aysdleelladpeidavi 67
                  v+i+G+G+ig+  +++l+++  ++ev+++++++ ++ +   +++g++      +d++ l + p+  avi
    CCG91788.1  5 VLIVGCGYIGKLVAKSLQQK--NQEVIGVVKSQGSKNR--LQQLGIPafalDITDHNSLNSLPKFSAVI 69
                  79************999888..99******99997777..58999995555555688888877777765 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.8e-05     0.027      39      81 ..       5      47 ..       3      58 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
                  EEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCE CS
  2-Hacid_dh_C 39 vGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgve 81
                  v i+G+G IG+ vak l++ + +vi++ +s+ ++++ ++lg+ 
    CCG91788.1  5 VLIVGCGYIGKLVAKSLQQKNQEVIGVVKSQGSKNRLQQLGIP 47
                  78************************99998877777777765 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.9e-05     0.028       3      44 ..       5      46 ..       3      58 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-05
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS- CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDideekvdklnsgki 44
                    + ++G GY+G   a  l ++  evigv +++   + l++  i
      CCG91788.1  5 VLIVGCGYIGKLVAKSLQQKNQEVIGVVKSQGSKNRLQQLGI 46
                    679************************998877777766655 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.2e-05     0.048       5      70 ..       9      62 ..       6     131 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.2e-05
                   TTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHH CS
  GDP_Man_Dehyd  5 iaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerl 70
                   + G+iG  +a+ L +k++ev+g+v+ + s n  r+++l   p          +  D+tD++sl++l
     CCG91788.1  9 GCGYIGKLVAKSLQQKNQEVIGVVKSQGSKN--RLQQLGI-P---------AFALDITDHNSLNSL 62
                   57*********************98777655..9988863.3.........467899999888876 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00066      0.98       2      76 ..       6      74 ..       5     101 .. 0.81
   2 ?    2.6   0.0     0.038        57     155     188 ..     133     162 ..     113     193 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00066
   3Beta_HSD  2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlasl 76
                ++ g+G++G+ + k+L + ++     v+ +++s+  +++l+++++      D+td+++l+  l + ++vi+ as 
  CCG91788.1  6 LIVGCGYIGKLVAKSLQQKNQ----EVIGVVKSQGSKNRLQQLGIP-AFALDITDHNSLNS-LPKFSAVIFSASS 74
                5669*****999999988886....6799999999999*******9.999********975.5666666666554 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.038
   3Beta_HSD 155 klvlkaNgrtlknggrlyTcaLRpagiyGegdkl 188
                 k+++ka +++l  gg      LR +giyG++   
  CCG91788.1 133 KILKKAEEKVLDRGG----TVLRASGIYGPQRVY 162
                 666777777777774....469********8754 PP

>> PglD_N  PglD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   9.5e-05      0.14       2      54 ..       5      59 ..       4      77 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.5e-05
      PglD_N  2 ivIiGaGGhgkvvadiieangeyeiigflDdn.kkt..evegypvlgkaiellksl 54
                ++I+G+G  gk va+ +++++  e+ig++ ++ +k+  ++ g+p    +i++ +sl
  CCG91788.1  5 VLIVGCGYIGKLVAKSLQQKN-QEVIGVVKSQgSKNrlQQLGIPAFALDITDHNSL 59
                79*****************99.69***99987333311344666666555555544 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.7e-05      0.11       4      73 ..       7      74 ..       5      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.7e-05
                SSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE--- CS
        NmrA  4 iGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtg 73
                i + G++Gk v++ l +++ +v  +v+ + s+  + l++ G    + d+ d++sl+++ k + v+fs+ +
  CCG91788.1  7 IVGCGYIGKLVAKSLQQKNQEVIGVVKSQGSK--NRLQQLGIPAFALDITDHNSLNSLPKFSAVIFSASS 74
                4468**********************998776..589*****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 1968.03
//
Query:       CCG91789.1  [L=296]
Description: Bifunctional protein folD (Includes: Methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-69  232.3   0.2    2.3e-69  231.8   0.2    1.2  1  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
    6.6e-36  123.1   0.2    1.2e-35  122.3   0.2    1.4  1  THF_DHG_CYH      Tetrahydrofolate dehydrogenase/cyclohydrolas
     0.0062   15.8   0.4      0.013   14.8   0.4    1.5  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.046   14.1   0.6        1.1    9.7   0.1    2.2  2  Glyco_trans_1_4  Glycosyl transferases group 1
       0.08   13.4   0.9       0.38   11.2   0.4    2.4  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
      0.088   12.3   0.0       0.18   11.3   0.0    1.4  1  Methyltransf_5   MraW methylase family


Domain annotation for each model (and alignments):
>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.8   0.2   7.6e-73   2.3e-69       1     157 [.     124     291 ..     124     294 .. 0.97

  Alignments for each domain:
  == domain 1  score: 231.8 bits;  conditional E-value: 7.6e-73
                    SHHHHHHHHTT.--SS--HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHCT....T-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT CS
  THF_DHG_CYH_C   1 hplnlgrlvkg.eeallpctpkgvvellketgielegkkvvvvGrsnivgkplallLlek....natVtvchsktkdlaeitreadivvvavGkpe 91 
                    hp+nlg++++g ++++ pctp g+ ellk+++ie+egk+vv++Grsnivgkp+a+lLl+k    natVt++hs +++++e++++adi+++a+Gk++
     CCG91789.1 124 HPINLGKMLLGeKDCFYPCTPLGIQELLKRYNIEIEGKEVVILGRSNIVGKPMAALLLQKskyaNATVTIVHSFSQNIKEHCQRADILIAAMGKAR 219
                    89********9677*********************************************87888******************************** PP

                    -B-GGGS-TT-EEEE---EEC......-TTEEE-SB-HHHHCTTSSEE--TTTSCHHHHHHHHHHHHHHHHH CS
  THF_DHG_CYH_C  92 likaemvkegavviDvGinrv......ekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaak 157
                    ++++++vk gavv+DvG++rv      ++ k+vGDvdf+e+k++as+itP+pgGVGpmT+amll+nt++aa+
     CCG91789.1 220 FVTKDFVKAGAVVVDVGVSRVadasshKGFKIVGDVDFDEIKKIASWITPNPGGVGPMTIAMLLSNTVKAAE 291
                    ************************9988999**************************************997 PP

>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.2     4e-39   1.2e-35       1     116 []       6     121 ..       6     121 .. 0.99

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 4e-39
                  E--HHHHHHHHHHHHHHHHHHHHHHT---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH-TT--EEEE-SS-ST CS
  THF_DHG_CYH   1 lldGkalakeireelkeeveklkekgvkpkLavilvgddpasevYvrnkkkaceevGieseliklpedvseeellklieelneddsvdGilvqlPlpk 98 
                  lldG+ +a +i++e+ e v+kl+++gv+p+ + i+vg+ p+se+Yvr+k+k+++e+Gi+s++i + edvs++e+l+++++ln+d+s++GilvqlPlp+
   CCG91789.1   6 LLDGRLVAHQIHRETMEVVQKLRQHGVQPSVVFIRVGQFPPSELYVRMKQKKAQELGIKSQVISFAEDVSQNEVLEKLYQLNQDPSIHGILVQLPLPS 103
                  69**********************9************************************************************************* PP

                  TS-HHHHHCCS-GGGBTT CS
  THF_DHG_CYH  99 hidekaileaispeKDVD 116
                  h++ek+i  ai+p+KD+D
   CCG91789.1 104 HLSEKEIALAIDPKKDID 121
                  *****************9 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4   4.3e-06     0.013      68     130 ..     184     238 ..     158     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.3e-06
                  HHTTTCECEEHCHHHHHHHHHHHH-SEEEE---BTTSS---SC-HHHHHTS-TTEEEEETTGG CS
  AlaDh_PNT_C  68 eslgakfvevlksqeellaeavkeadvvigtvlipGkkaPkLvteemvksMkpgsVivDvAid 130
                  +++ + +v++++s +++++e++++ad++i +    Gk  ++ vt++ vk    g+V+vDv ++
   CCG91789.1 184 SKYANATVTIVHSFSQNIKEHCQRADILIAA---MGK--ARFVTKDFVK---AGAVVVDVGVS 238
                  3455566999*******************99...454..69*****995...7*******875 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.054   1.6e+02      20      70 ..      20      84 ..       7      87 .. 0.62
   2 ?    9.7   0.1   0.00037       1.1      34     102 ..     169     237 ..     143     265 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.054
                     HHHHHHHHH.H..H..EEEEEES---.....HHHHH.HHT..T-T.T.EEEE---..TH.HHHHH CS
  Glyco_trans_1_4 20 lleavpllrkk..d..vrlvivGdgp.rp..eelee.laa..gleer.veftGfv..ed.laell 70
                      +e v++lr++  +  v ++ vG+ p  +   ++++ +a+  g++++ ++f+  v  ++ l++l+
       CCG91789.1 20 TMEVVQKLRQHgvQpsVVFIRVGQFPpSElyVRMKQkKAQelGIKSQvISFAEDVsqNEvLEKLY 84
                     567779999775526799*****876433443333313335788877788888886422466666 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00037
                      EEEES---..HHHHHHHTT-T.TEEEE---.THHHHHHHH-SEEEE-----SHHHHHHHHTT-EEEE-TG CS
  Glyco_trans_1_4  34 lvivGdgprpeeleelaagleerveftGfv.edlaellaaadvfvaPsegfglkllEamaaglpvVatdv 102
                        ivG +p+++ l ++ +  +++v+++    ++++e+ ++ad+++a +   + ++ +   ag  vV   v
       CCG91789.1 169 SNIVG-KPMAALLLQKSKYANATVTIVHSFsQNIKEHCQRADILIAAMGKARFVTKDFVKAGAVVVDVGV 237
                      44666.444323333333223457666666599***************7778888888888887775544 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.1   6.3e+03      76      91 ..      17      32 ..      12      37 .. 0.81
   2 ?   11.2   0.4   0.00013      0.38      22      96 ..     157     235 ..     147     263 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.1
                    HHHHHHHHHHHHHTTS CS
  Semialdhyde_dh 76 agvskelapklaeagv 91
                    +  ++e+++kl+++gv
      CCG91789.1 17 HRETMEVVQKLRQHGV 32
                    6678999999999998 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00013
                     TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE......GGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEEEES CS
  Semialdhyde_dh  22 hpevelvvllsssrsaGkklaeavkaleegkdlkved......vdeeelkevdivflalpagvskelapklaeagvkviDl 96 
                     + e ++vv+l++s+  Gk++a++  + +++++ +v+         +e  +++di++ a+++  ++ +++++++ag++v+D 
      CCG91789.1 157 EIEGKEVVILGRSNIVGKPMAALLLQKSKYANATVTIvhsfsqNIKEHCQRADILIAAMGK--ARFVTKDFVKAGAVVVDV 235
                     5556788899999999999999988666666655543223332445556999999999976..789999**********97 PP

>> Methyltransf_5  MraW methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.1e-05      0.18      67     120 ..     186     255 ..     175     259 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.1e-05
                     .---.EEEEES-GGGHHHHHHHTTTT...............-EEEEEEE-S--HHHHH-GGG---SSS-- CS
  Methyltransf_5  67 fekr.ltlvkgnfkelkealaeanvt...............kvdgillDLGvSslqldkaerGFsfaeda 120
                     +++  +t+v++ ++++ke+++ a++                k+ ++++D GvS +   ++++GF    d 
      CCG91789.1 186 YANAtVTIVHSFSQNIKEHCQRADILiaamgkarfvtkdfvKAGAVVVDVGVSRVADASSHKGFKIVGDV 255
                     3443499999999**********96667899*********************************876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2211.14
//
Query:       CCG91790.1  [L=1390]
Description: DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-86  289.6   0.0    5.7e-86  288.7   0.0    1.4  1  RNA_pol_Rpb1_1   RNA polymerase Rpb1, domain 1
    9.8e-76  254.7   0.6    1.7e-75  253.9   0.6    1.4  1  RNA_pol_Rpb1_5   RNA polymerase Rpb1, domain 5
    7.3e-38  130.4   0.0    2.6e-27   96.1   0.0    2.5  2  RNA_pol_Rpb1_2   RNA polymerase Rpb1, domain 2
    5.6e-24   84.8   0.2    2.1e-23   83.0   0.0    2.2  2  RNA_pol_Rpb1_3   RNA polymerase Rpb1, domain 3
    3.1e-15   56.0   0.0    1.4e-14   53.9   0.0    2.1  2  RNA_pol_Rpb1_4   RNA polymerase Rpb1, domain 4
    1.1e-05   25.5   0.4      0.087   12.9   0.0    3.7  3  Apocytochr_F_C   Apocytochrome F, C-terminal
     0.0014   18.5   5.8        2.7    8.0   0.0    4.0  4  RnfC_N           RnfC Barrel sandwich hybrid domain
      0.008   16.4   0.6        4.6    7.5   0.0    3.7  3  Peptidase_M23    Peptidase family M23
  ------ inclusion threshold ------
      0.051   13.4   3.5         21    5.0   0.0    3.8  3  Biotin_lipoyl_2  Biotin-lipoyl like


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.7   0.0   2.8e-89   5.7e-86       4     312 .]      20     346 ..      17     346 .. 0.95

  Alignments for each domain:
  == domain 1  score: 288.7 bits;  conditional E-value: 2.8e-89
                     --EEEEEE--HHHHHHH-SBB--STTSTCSTSSSSBBSSSSSSSSS-SSSSSTSTTTSSTTT.........T---..........--EEEEEECE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxx..........xxxxxxxxxx RF
  RNA_pol_Rpb1_1   4 ikeiqfgiaspeeirkwSvvevtkaetieekslkPeegGllDerlgtidkdleCetCgkkkk.........eCeg..........hfGhieLakP 79 
                     ++e++++iaspe+i +wS++ev+++eti++++ kPe+gGl++er+++++kd+eC +Cgk+k          +C +          ++Ghi+La P
      CCG91790.1  20 FDEVKISIASPETIESWSKGEVRNPETINYRTFKPEKGGLFCERIFGPTKDWEC-ACGKYKRikykgvicdRCGVevtlsrvrreRMGHIRLAVP 113
                     689***************************************************.******999****9999999******************** PP

                     EE-HHHHHH...........HHHHCTTCETTTTEBSS-TT.....SH....HHHHHHCSSSCC.......CCHHHHHHHHCCS-BE-SSSSB-EE CS
                     xxxxxxxxx...........xxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1  80 vfhigffkl...........ilkilecvckecskllldee.....kkkllsklkkrekleelk.......krlkaieelckkinlcekCgavqpk 151
                     v hi+f+k+           + k+le+v++++ +l++d++      k+lls++++r++l ++        ++++a+++++k+inl          
      CCG91790.1 114 VSHIWFLKCmpsrlglmmdmTAKDLERVIYYEDYLVVDPGktplkFKQLLSEQEYRDALAQYGegsfvakMGAEAVRDVLKQINL---------- 198
                     ****************************************777763447777778888888888999999999999999999999.......... PP

                     EEEETTEEEEEESSSSTSCEEEE-HHHHHHHHHCSTHHHHHHTTSBTTTB-GGGCCECCEEE--GGGS-BEESSSSSEEBECCCCHHHHHHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 152 leeegeklkaalkkskeeekeklsaekvkkllkriededvevlgfkssgsrPewliltvlPVpPpeiRPsvqldggrrsedDlteklrdiikrNn 246
                      e+  ++l  a++ +++       ++  kkl kr++     v g+ ss++rPew+il+vlPV+Pp++RP+v l+ggr++++Dl++++r++i+rNn
      CCG91790.1 199 -ESLANDLSRAIEGTRS-------KQLKKKLSKRLK----LVQGLISSETRPEWMILEVLPVIPPDLRPLVPLEGGRFATSDLNDLYRRVINRNN 281
                     .8888999999999988.......777889999999....9****************************************************** PP

                     HHHHHHHSSSSSTCHHHHHHHHHHHHHHCC-TTSSSSSEEBSTTSSS--THHHHHTSSSSCCCCCT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 247 rLkkaeeegapeliieeekelLQehvatlfdneisglkpatqkskrplkslsqrLkGKeGrfRgnL 312
                     rL++ ++ ++p+ ii++ek++LQe+v++l+dn  +g + +t + +rplksls++L+GK GrfR nL
      CCG91790.1 282 RLRTLLQLKTPDVIIRNEKRMLQEAVDALLDNGRHG-RAVTGAGNRPLKSLSDMLQGKTGRFRMNL 346
                     ************************************.999*************************9 PP

>> RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.9   0.6   8.6e-79   1.7e-75       1     265 [.     762    1298 ..     762    1300 .. 0.96

  Alignments for each domain:
  == domain 1  score: 253.9 bits;  conditional E-value: 8.6e-79
                      B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTSEEEETTS-EEESSGGGTS........................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
  RNA_pol_Rpb1_5    1 GLkvkefffhtmggReGLiDtAvkTaesGYlqRrlvkaledvvvkyddtvrnsggeivqflygedg........................... 66  
                      GL+v e+f++t+g+R+GL+DtA+kTa++GYl+R+l ++++dvv++ +d+++n+g+ ++++ +g+++                           
      CCG91790.1  762 GLSVLEYFISTHGARKGLADTALKTADAGYLTRKLHDVAQDVVITAEDCGTNKGIIVKAIYEGDEEivklseriygrvccdeifdpmtgkkii 854 
                      9******************************************************99999999999*************************** PP

                      .................................................B--TT-BHHHHHHHHHHHHHHCCCSSTTSSTCSSTSSSSS.... CS
                      .................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
  RNA_pol_Rpb1_5   67 .................................................lvepGeavGiiaaQSiGePgTQltlnTFHfaGvasknvtl.... 106 
                                                                       + ++Ge+vG+iaaQSiGePgTQlt++TFH++G+as+ +++    
      CCG91790.1  855 qpgeliderkakeieeagvekvkirsvltcenkwgvcamcyglnlatnkMAKLGESVGVIAAQSIGEPGTQLTMRTFHIGGTASQVFKQpqir 947 
                      *****************************************************************************************9999 PP

                      ....SHHHHHHH.....HTT-SS-SS-EEEEEB-SSSSSCHHHCHHHHHHHSE........................................ CS
                      ....xxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................ RF
  RNA_pol_Rpb1_5  107 ....Gvprlkei.....lnvskniksksltvllvdeeakelekakkvkkaiek........................................ 150 
                          G++++ ++      + + ++ sks+++ ++d   +ele+++ + ++i+                                         
      CCG91790.1  948 arndGIVQYIDLrtvktAENHFIVLSKSGYLAVLDPSGRELERHTVIVGSIILipdgekvkkgqvfvqwdpynvpiltekggivefrdiiegv 1040
                      99999998888866543444556789**************************9**************************************** PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5  151 ............................................................................................. 150 
                                                                                                                   
      CCG91790.1 1041 tvkkeldettkqistiviehkhdlhpqllildentreviafygipagarievkpgdkvvagqriartprkmvqtkditgglprvaelfearkp 1133
                      ********************************************************************************************* PP

                      .................CBTTEEEEEEEEEEEEEEETEEEEEEECS--HHHHTTSTT..TBETTTEEES...SHHHHHHHHCHHHHHHHHHHH CS
                      .................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  151 .................gikkikrilvkeaekgkeeekelvletegvnlsevlkvee..vvdageilsn...diaeileilgieaarkallke 221 
                                        i +++ril+++ e+g ee ++l      ++ls++l v +  vv++g++l++    ++eile++gi++++++ll+e
      CCG91790.1 1134 kdsaeiakidgivedggIIRGKRRILIRDVETGIEE-EHL------IPLSKHLIVYKgdVVKKGQQLTEgpiVPQEILEVCGIQELQEYLLNE 1219
                      ****************88889999999999999888.899......9*****9999889***********999******************** PP

                      HHHHHHHTTS---HHHHHHHHHHHTTTSS---SSTT...................................CHCCSSSH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................xxxxxxxx RF
  RNA_pol_Rpb1_5  222 iqevykvqgvsvndrHlelivdqmtkkgeivavnrs...................................Ginkaels 265 
                      +qevy+ qgv++nd+H+e+i++qm+kk++i++ +++                                   Gi+ka+l 
      CCG91790.1 1220 VQEVYRLQGVEINDKHIEIIIKQMLKKVKILDSGDTsflweeqvdrlrfeeenriveakggkpavgvpvllGITKASLD 1298
                      ***********************************98888888888888888888888888888888888888888765 PP

>> RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   6.6e-11   1.3e-07       1      42 [.     348     389 ..     348     401 .. 0.93
   2 !   96.1   0.0   1.3e-30   2.6e-27      74     165 ..     398     489 ..     390     490 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 6.6e-11
                     SEEESSEEEEEEEEESSS-TTEEEEEHHHHTTSEEEEE-STT CS
  RNA_pol_Rpb1_2   1 GkrvdysaRsvispdpnlkldevgvPisvakkltvpeivtel 42 
                     Gkrvdys+Rsvi+ +p+lkl++ g+P+++a +l+ p ++ +l
      CCG91790.1 348 GKRVDYSGRSVIVIGPELKLHQCGLPKKMALVLFEPFMIRRL 389
                     9***********************************999875 PP

  == domain 2  score: 96.1 bits;  conditional E-value: 1.3e-30
                     TTTT-SCHHCCTTTTS....EEEEE--TTSEEEEE-SSTTSGGGEEEEEEEEESSSSEEEEGGGHCCCT--SSS-EEEEE--SSHHHHHHHHHCS CS
  RNA_pol_Rpb1_2  74 lkakkrklakelekgd....iverhvkdgdvvllNRqPsLhklsimahrvkvlekktlrlnlsvttayNaDFDGDemnlhlpqseearaEaeell 164
                     +++ k+     +ek+d     v ++v+ g +vllNR+P+Lh+lsi+a++  ++e+ ++r++ +v+tayNaDFDGD+m++h+p s ea+ Ea+ l+
      CCG91790.1 398 VRTAKK----MIEKQDplvwDVLEQVTAGHLVLLNRAPTLHRLSIQAFEPILIEGDAIRIHPLVCTAYNADFDGDQMAVHVPLSIEAQLEARLLM 488
                     444433....33333333338999********************************************************************999 PP

                     B CS
  RNA_pol_Rpb1_2 165 l 165
                     l
      CCG91790.1 489 L 489
                     6 PP

>> RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   1.1e-26   2.1e-23       1     157 []     493     649 ..     493     649 .. 0.91
   2 ?   -3.7   0.0       5.2     1e+04     101     126 ..     814     837 ..     803     855 .. 0.56

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 1.1e-26
                     CSEETTTTEESSS--THHHHHHHHHSSTT............EEEEHHHHHHHHHHSSSCCSSSSSSSSSBESSSE............BEEHHHHH CS
  RNA_pol_Rpb1_3   1 nilspqsgkPvigivQDsllGvyllTked............vfidreeaqqllykgvgsdsktvtlrpailkpke............lwtgkqtf 71 
                     ni sp+sgkP+ +++QD+ lG+y++T+               f+d+ e++ +++ g      ++++++ i  +++            ++++++t 
      CCG91790.1 493 NIFSPSSGKPITTPSQDITLGCYYITQAPlkskaqeqkrkpLFSDPLEVIFAYNDG------NLQVHDLIFLKNPdygketifgdknKKVIETTP 581
                     89******************************************************......7778888887777788888888888******** PP

                     HCCCHCCCCEEEESSSSSTSEEECSSEEEES--SHHHHSSSSTTSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEB-TGGGG CS
  RNA_pol_Rpb1_3  72 srilpneinyerkneekdgkvlikngelikGvidkkvvgkksqgslihvlakeygiketvrfldslqrlgfkyllqsgftigigDt 157
                     +r+++n+i +e+          + n          k  gkk++g++i  ++++ g ++tv+ ld+l++lgf+ ++++g++ig++D+
      CCG91790.1 582 GRVIFNQIWPEE--------LGFYN----------KPAGKKQLGEIILKCYQKVGREKTVQCLDKLKQLGFSEATKAGISIGMDDM 649
                     ************........22233..........33479*********************************************8 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.2
                     ES--SHHHHSSSSTTSHHHHHHHHCH CS
  RNA_pol_Rpb1_3 101 kGvidkkvvgkksqgslihvlakeyg 126
                     kG+i k++++  + +++++   + yg
      CCG91790.1 814 KGIIVKAIYE-GD-EEIVKLSERIYG 837
                     4555555555.33.444444444444 PP

>> RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   7.1e-18   1.4e-14       1     107 [.     678     759 ..     678     760 .. 0.85
   2 ?   -2.4   0.0       2.3   4.5e+03      46      59 ..     963     977 ..     937     977 .. 0.70

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 7.1e-18
                     HHHHCTHTCCHHHTTHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSHHHHHHHCTSSS-HHHHHHHHTB-EEEEBTTBSS--SSTSCSSTTS CS
  RNA_pol_Rpb1_4   1 ieeaerygkledlpgksleelfeakinkilnkardkagkiaskslaasNsiliMvksGaKGsiinisqiagclGqqnvegkripkgfsgrtlphf 95 
                     i++ ery+k+ d++++++ee+   + +++ ++   +          ++N+++ Mv+sGa+G+ ++++q+ag++G++++++              +
      CCG91790.1 678 ITDGERYNKIVDIWTQATEEISSVIYKTLESNLGRP----------EYNPLYLMVDSGARGNRQQVRQLAGMRGLMAKPS--------------G 748
                     7999*******************9999998865555..........46******************************94..............4 PP

                     SSSESSTTTSSE CS
  RNA_pol_Rpb1_4  96 kkidespesrGF 107
                     + i+e+p+ ++F
      CCG91790.1 749 E-IIERPIISNF 759
                     4.5555555555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.3
                     T.TTSHHHHHHHCTS CS
  RNA_pol_Rpb1_4  46 a.asNsiliMvksGa 59 
                     + a+N++++++ksG+
      CCG91790.1 963 KtAENHFIVLSKSGY 977
                     3247*********96 PP

>> Apocytochr_F_C  Apocytochrome F, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.17   3.4e+02      30      60 ..     983    1013 ..     946    1021 .. 0.74
   2 !    6.5   0.0    0.0042       8.4      17      64 ..    1059    1108 ..    1047    1110 .. 0.73
   3 !   12.9   0.0   4.4e-05     0.087      22      66 ..    1154    1199 ..    1128    1201 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.17
                      TSTSEEE-EEEESSS-BS--ST-EE-TT-BS CS
  Apocytochr_F_C   30 tedgeavvetipaGpelivsegqevkageal 60  
                       +  e   +t+ +G  +++ +g++vk+g+  
      CCG91790.1  983 PSGRELERHTVIVGSIILIPDGEKVKKGQVF 1013
                      33334457899*****************975 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0042
                      EEEESSEEEEEEETSTSEEE..-EEEESSS-BS--ST-EE-TT-BSC--- CS
  Apocytochr_F_C   17 ekeekggtevtietedgeav..vetipaGpelivsegqevkagealtndP 64  
                      e++++ + ++ i +e+ ++v     ipaG+++ v+ g++v ag+ ++  P
      CCG91790.1 1059 EHKHDLHPQLLILDENTREViaFYGIPAGARIEVKPGDKVVAGQRIARTP 1108
                      4444446677777777766623467********************99888 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 4.4e-05
                      SEEEEEE.ETSTSEEE-EEEESSS-BS--ST-EE-TT-BSC----- CS
  Apocytochr_F_C   22 ggtevti.etedgeavvetipaGpelivsegqevkagealtndPnv 66  
                      g+ ++ i + e g + ++ ip   +liv +g+ vk+g++lt+ P v
      CCG91790.1 1154 GKRRILIrDVETGIEEEHLIPLSKHLIVYKGDVVKKGQQLTEGPIV 1199
                      5888888445678888999***********************9966 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.4   6.7e+03      63      87 ..     939     964 ..     905     972 .. 0.60
   2 ?    3.2   0.2     0.041        82      44      98 ..     999    1060 ..     990    1063 .. 0.70
   3 !    8.0   0.0    0.0014       2.7      40      62 ..    1086    1108 ..    1075    1118 .. 0.82
   4 !    7.3   0.1    0.0022       4.4      30      61 ..    1171    1196 ..    1160    1202 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.4
      RnfC_N  63 g.fvsapvhasvsGtVkaiekrlvah 87 
                 + f + ++ a   G V+ i+ r+v++
  CCG91790.1 939 QvFKQPQIRARNDGIVQYIDLRTVKT 964
                 22555566666677777777766665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.041
      RnfC_N   44 plvkvgdkVlkGqkiaeaegfvsapvhasvsGtV........kaiekrlvahgsgveavvien 98  
                  +l+  g+kV+kGq+  + + +  +p+     G V        ++++k l  ++++++++vie 
  CCG91790.1  999 ILIPDGEKVKKGQVFVQWDPY-NVPILTEKGGIVefrdiiegVTVKKELDETTKQISTIVIEH 1060
                  57789************9999.99999999998833322222233444444445566777775 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0014
      RnfC_N   40 apakplvkvgdkVlkGqkiaeae 62  
                  a a++ vk gdkV  Gq+ia++ 
  CCG91790.1 1086 AGARIEVKPGDKVVAGQRIARTP 1108
                  557788**************975 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0022
      RnfC_N   30 lvlplsqhiGapakplvkvgdkVlkGqkiaea 61  
                   ++pls+      +++v +gd V+kGq+++e 
  CCG91790.1 1171 HLIPLSK------HLIVYKGDVVKKGQQLTEG 1196
                  5555555......479************9985 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.28   5.5e+02      10      50 ..     940     982 ..     931    1013 .. 0.57
   2 !    7.5   0.0    0.0023       4.6      45      73 ..    1078    1108 ..    1052    1118 .. 0.70
   3 ?    3.3   0.0     0.046        93      18      69 ..    1140    1193 ..    1130    1196 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.28
                    ETTT-EEEESSSEEEEEEEE..ETTTEEEEEEEECTCEEEEEE CS
  Peptidase_M23  10 apkgtpVlAaadGtVvfagk..kegyGnvviidhgdgystlya 50 
                    + k  +++A +dG V +++    +++ n+ i+  ++gy  +  
     CCG91790.1 940 VFKQPQIRARNDGIVQYIDLrtVKTAENHFIVLSKSGYLAVLD 982
                    4555679999999997776632335566666666666665543 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0023
                     EEEEEEE..ESEESS-TTEEE-TTCEEEEEB CS
  Peptidase_M23   45 ystlyah..lskisvkegqkVkaGqvIGtvg 73  
                     ++  y+     +i+vk+g+kV aGq I+++ 
     CCG91790.1 1078 VIAFYGIpaGARIEVKPGDKVVAGQRIARTP 1108
                     55555542235688**************875 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.046
                     ESSSEEEEEEEEETTTEEEEEEEECTCEEE.EEEEESEES.S-TTEEE-TTCEE CS
  Peptidase_M23   18 AaadGtVvfagkkegyGnvviidhgdgyst.lyahlskis.vkegqkVkaGqvI 69  
                     A  dG V   g  +g   ++i d ++g++      lsk   v +g+ Vk+Gq++
     CCG91790.1 1140 AKIDGIVEDGGIIRGKRRILIRDVETGIEEeHLIPLSKHLiVYKGDVVKKGQQL 1193
                     6677877777777677777777778885440445577766699*********97 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.011        21      17      34 ..    1000    1017 ..     998    1020 .. 0.83
   2 ?    3.4   0.0     0.033        66      14      31 ..    1088    1105 ..    1088    1106 .. 0.90
   3 ?    3.2   0.3     0.039        78      18      30 ..    1181    1193 ..    1177    1195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.011
  Biotin_lipoyl_2   17 nVkdGqrVkaGdvLaelD 34  
                       ++ dG  Vk+G+v ++ D
       CCG91790.1 1000 LIPDGEKVKKGQVFVQWD 1017
                       6789*********87766 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.033
  Biotin_lipoyl_2   14 aqlnVkdGqrVkaGdvLa 31  
                       a++ Vk G+ V aG+ +a
       CCG91790.1 1088 ARIEVKPGDKVVAGQRIA 1105
                       5899***********998 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.039
  Biotin_lipoyl_2   18 VkdGqrVkaGdvL 30  
                       V  G++Vk+G+ L
       CCG91790.1 1181 VYKGDVVKKGQQL 1193
                       678********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.98u 0.38s 00:00:01.36 Elapsed: 00:00:00.57
# Mc/sec: 7401.56
//
Query:       CCG91791.1  [L=1289]
Description: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.5e-163  543.7   1.7   3.1e-162  540.1   2.1    2.2  2  RNA_pol_Rpb2_6   RNA polymerase Rpb2, domain 6
    4.4e-30  103.7   0.0    8.6e-30  102.7   0.0    1.5  1  RNA_pol_Rpb2_3   RNA polymerase Rpb2, domain 3
    1.9e-25   89.6   0.2    1.3e-21   77.1   0.4    2.5  2  RNA_pol_Rpb2_2   RNA polymerase Rpb2, domain 2
    4.6e-25   87.8   0.1    1.1e-24   86.7   0.1    1.7  1  RNA_pol_Rpb2_7   RNA polymerase Rpb2, domain 7
    8.4e-24   83.6   5.2      3e-23   81.8   5.0    2.2  2  RNA_pol_Rpb2_45  RNA polymerase beta subunit external 1 domai
    1.4e-21   77.0   0.0    6.6e-21   74.8   0.0    2.0  1  RNA_pol_Rpb2_1   RNA polymerase beta subunit
  ------ inclusion threshold ------
      0.018   14.8   4.2       0.14   12.0   1.2    2.8  2  Biotin_lipoyl_2  Biotin-lipoyl like
      0.031   14.1   0.1      0.061   13.1   0.1    1.4  1  OEP              Outer membrane efflux protein
      0.056   13.9   1.2         18    5.7   0.9    2.8  2  AAA_23           AAA domain
      0.082   13.1   1.0          2    8.7   0.0    3.3  3  CDC48_N          Cell division protein 48 (CDC48), N-terminal
       0.13   12.3   0.9       0.37   10.8   0.9    1.7  1  Adhesin_P1_N     Adhesin P1 N-terminal domain


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.14   2.3e+02       2      29 ..     616     643 ..     615     662 .. 0.90
   2 !  540.1   2.1  1.9e-165  3.1e-162      18     390 .]     699    1189 ..     668    1189 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
                     HHT-SS-TTB-HHHHHHHHHHGGGB-S- CS
  RNA_pol_Rpb2_6   2 aklapvvehvqspriiiqaamekqalgi 29 
                     a l+p+ eh +++r ++ ++m++qa+ +
      CCG91791.1 616 AGLIPFLEHDDANRALMGSNMQRQAVPL 643
                     7899********************9764 PP

  == domain 2  score: 540.1 bits;  conditional E-value: 1.9e-165
                      HHHHHGGGB-S---TTTTT---SSEEEESS----SSB-S.TTTTTS.........GGGS-SEEEEEBBBS--TTTTTTT-EEEBCHHHHTTTT CS
  RNA_pol_Rpb2_6   18 iqaamekqalgiyslnkfkrsnqktyllcinqkPlvktgdkveagqvl.dgpatekgelalGqnavVAvmsyeGYniEDaiilnerlvdrdvf 109 
                      i++  +++++giy+lnkf rsn  t   cinqkP+vk+g+ v++g++l dgp+t++gelalG+n++VA+m+++GYn+EDaii++er+v++d+f
      CCG91791.1  699 IKQ-GSEKEVGIYKLNKFMRSNAGT---CINQKPIVKKGQVVKKGDILaDGPSTQNGELALGRNLLVAFMPWNGYNFEDAIIVSERIVKEDLF 787 
                      333.3445557**************...***************************************************************** PP

                      -EEEEEE..EEE--SSSS---.-S--..--SS-GGGS-TTSB--SS-EEETT-EEE---...B-----...-----------..-B---EE-- CS
  RNA_pol_Rpb2_6  110 tsihikeyeveardtklgeeeitrdipnvseealkkLdedGivrvgaevkegdilvgkvt.kgeteltpeekllraifgekarevkdtslrvk 201 
                      tsi+i+e+e+ ardtklg+eeitrdipnv++ealk+L  dGi+rvgaevk+gdilvgk+t k+etel pee+llraifgeka +vkd+slrv+
      CCG91791.1  788 TSIYIDEFEIVARDTKLGPEEITRDIPNVGDEALKNLGPDGIIRVGAEVKPGDILVGKITpKSETELAPEERLLRAIFGEKAADVKDSSLRVP 880 
                      ********************************************************************************************* PP

                      TT-EEEEEEEEE................................................................................. CS
  RNA_pol_Rpb2_6  202 sgeegvVdkvkvfsr.............................................................................. 216 
                      sg+ g+V +v+v s                                                                               
      CCG91791.1  881 SGTYGIVMDVRVSSGtarvrkekinaseakqkikeieerydkkeeelreeltqalsnillnekipldvvnvetgeiiipanrkitkvllrkma 973 
                      ************655****************************************************************************** PP

                      ..............................................EE-TT--EEEEEEEEEEE---TT-BEEETTS---BBEEEB-TTTSEE CS
  RNA_pol_Rpb2_6  217 ..........................................ekgdelkagvnklvkvyvaqkRklqvGDKfasrhGqKGvvslilpqeDmPf 267 
                                                                e+g+++++g +k vkv++a+kRkl+vGDK+a+rhG+KGvvs+i+p+eDmP+
      CCG91791.1  974 qaydkieidpspirskifdiignfeakfeqlrndreleldqiESGEDTEPGIIKQVKVFIANKRKLSVGDKMAGRHGNKGVVSKIVPVEDMPY 1066
                      ********************************************************************************************* PP

                      ETTS---SEEE-GGGCHHH-BTTHHHHHHHHHCCCSSSS--B--TT-...-HHHHHHHHHTTS-TT-EE-EEETTTS-B-SS-EEB-EEEEEE CS
  RNA_pol_Rpb2_6  268 ledGivvDivlNPlgvPSRmtigqllEtllgkaaalegkkvdatvFdgakeeeikelLeeagleasGkevlydGrtGekleaeifvGviYylk 360 
                      l+dG++vDivlNPlgvPSRm++gq+lEt+lg aa+  g++v+++vFdg kee+i+e L +ag++++Gk++lydGrtGe+++++++vGviY++k
      CCG91791.1 1067 LPDGTPVDIVLNPLGVPSRMNVGQVLETHLGIAAKKLGFNVATPVFDGVKEEKIREFLVKAGMDEDGKSILYDGRTGERFNQRVVVGVIYMMK 1159
                      ********************************************************************************************* PP

                      BS--CCCS----SS--B-TTT--B-SCGGG CS
  RNA_pol_Rpb2_6  361 LkhlvedKihaRstGpyslltqQPlgGkaq 390 
                      L+h+v+dKihaR+ Gpysl+tqQPlgGkaq
      CCG91791.1 1160 LNHMVADKIHARAVGPYSLVTQQPLGGKAQ 1189
                      ****************************97 PP

>> RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   5.3e-33   8.6e-30       1      67 [.     464     531 ..     464     532 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 5.3e-33
  RNA_pol_Rpb2_3   1 qvldrlnplselshlrrvssl.rgglskerkttevRdlhpshwGriCpveTPEGencGlvksLallar 67 
                     q++d++nplsel+h+rr+s+l +ggls+er+++evRd+hpsh+GriCp+eTPEG+n+Gl+  +a ++r
      CCG91791.1 464 QLMDQINPLSELTHKRRLSALgPGGLSRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIATMASYSR 531
                     89**************************************************************9975 PP

>> RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00036      0.59       1      62 [.     141     204 ..     141     207 .. 0.89
   2 !   77.1   0.4   7.9e-25   1.3e-21     100     190 .]     309     403 ..     290     403 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00036
                     -TSCEEEEE-SSSSSESSSCCEECCCEEEEECCCCSTSCEEEEE...CTTSSSEEEHHHHHHHTT CS
  RNA_pol_Rpb2_2   1 rsngiyvekekdknkisatvtsslisqrgsvlklekdgktliwt...riskkrkipivivlkAlg 62 
                     rs+gi +e+    n+  + ++  +i +rgs+l++  d ++l+++   r++k+rk  i  +l+Al 
      CCG91791.1 141 RSPGICFESSFHSNGK-TLYSFRIIPDRGSWLEVAFDSNDLLYVyldRRKKRRKFLITTLLRALA 204
                     89**************.**********************98776444788999999999999995 PP

  == domain 2  score: 77.1 bits;  conditional E-value: 7.9e-25
                     HHHHHHHHHCSSTTSSSCCCCCHHHHHHH......CHHHHHHHTTTTSSTTTTTSSSTCHH...HHHHHHHHHHHHHHHHTTSSSS--TTSGGGE CS
  RNA_pol_Rpb2_2 100 eealdyigkvvalrrgeearlqsareilq......krydlgeigreklnkhlglseslenkr.lkaqdilymidrLlslklgrrevDDiDhlgnk 187
                      eal++i++  +lr+g++++  +a+ +l+      krydlg++gr+kln++l+++ + e  r l+ +d+++++++L++lk+g++ +DDiDhlg +
      CCG91791.1 309 IEALKEIYR--RLRPGDPPTESNAKLLLKrllldpKRYDLGRVGRYKLNQKLNIQVDPE-IRiLTWEDLVAATRYLIKLKKGEGITDDIDHLGSR 400
                     58******9..**********************************************55.666******************************** PP

                     EEE CS
  RNA_pol_Rpb2_2 188 Rvr 190
                     Rvr
      CCG91791.1 401 RVR 403
                     **8 PP

>> RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.1   6.6e-28   1.1e-24       1      84 [.    1191    1264 ..    1191    1267 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 6.6e-28
                      BBEEEEHHHHHHHHHHTBHHHHHHHHTTTTTEEEEEEESSSSSCCCEEEBTTTTCSSSEEEEEEEHHHHHHHHHHHHTTBEEEE CS
  RNA_pol_Rpb2_7    1 GGlrfGEMErdaliayGaaalLkerltikSDavevdvcgrckllaaaneCkivkseekiekveipeafklLlqeLqslgialkl 84  
                      GG+rfGEME++a++ayGaa++L+e+lt+kSD    dv+gr++++++     ivk+e+ +e++ +pe+f++L++e+q+l++++++
      CCG91791.1 1191 GGQRFGEMEVWAMEAYGAAYVLQELLTVKSD----DVQGRTRIYES-----IVKGENYLETT-TPESFNVLVKEMQGLCLEVTI 1264
                      9******************************....***********.....******99999.*****************9986 PP

>> RNA_pol_Rpb2_45  RNA polymerase beta subunit external 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   5.0   1.9e-26     3e-23       1      65 []     542     607 ..     542     607 .. 0.99
   2 ?   -3.0   0.0       5.8   9.5e+03      36      55 ..    1161    1180 ..    1159    1182 .. 0.80

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 1.9e-26
                      EEEEE.TEEEEEEEEEEHHHHTTSEEE-SSS-BETTSCBSSSEEEEECSSCEEEEEGGG-SEEESS CS
  RNA_pol_Rpb2_45   1 YrkVe.gkvtdevvYLtAdeEekyviAqAnapldeegrfveerVlaRrkgevelvepeeVdymDVS 65 
                      YrkV+ gkvt+e+vY tAd+Ee+yviA An+ + ++g+++++rV++R++ e+++ve+e+V+y+DVS
       CCG91791.1 542 YRKVVnGKVTNEIVYFTADQEENYVIAMANTAVSDDGTILDQRVAVRFRREFMEVEREKVEYIDVS 607
                      9****************************************************************9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.8
                       SCBSSSEEEEECSSCEEEEE CS
  RNA_pol_Rpb2_45   36 grfveerVlaRrkgevelve 55  
                       +++v ++++aR  g + lv+
       CCG91791.1 1161 NHMVADKIHARAVGPYSLVT 1180
                       68899******888877776 PP

>> RNA_pol_Rpb2_1  RNA polymerase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0     4e-24   6.6e-21       1     202 [.      21     450 ..      21     451 .. 0.95

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 4e-24
                     CTTHHHHHHHHHHHHTHHHHHC....TTSSECCHCSSSHCSSSCEEEEEEEEEEESCSSECTTSCEEES.HHHHHHCTSBXEEEEEEEEEEEECC CS
                     xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1   1 gLvsqqldSFnkfveqdlekii....keeaaieseeeiqssgeelelkfvsirlgkPvvdesdasereiyPkearlrnltYsaplyvklklvvye 91 
                     +L++ q +S+ +f++ ++  +     + +  ++ +++i+s+ +++ l++v++ +g+P+++            ++   + tY apl v  +l+   
      CCG91791.1  21 NLIEHQTKSYADFLQLSVAPQDrkpeGLHGVFQEVFPIESYDGKVRLEYVNYEIGDPKFSP----------IDCLRDGKTYAAPLHVTFRLKD-- 103
                     58999********8877665541111456778888899999999**************986..........9******************998.. PP

                     CCTCCEEEEEEEEEEEEEXBTTSTTSSSTTS.HHHHHHTTS.TTS..SSEEETTCEEEEXEEEE............................... CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................... RF
  RNA_pol_Rpb2_1  92 kdnkeeikeeevyiGelPlMlrskacvlseaseeelvelkEcpldqGGyFiinGtekvivaqek............................... 155
                        +e  kee+vy+GelP+M+ +                        G+FiinG+e+viv q++                               
      CCG91791.1 104 ---EEGVKEEKVYMGELPMMTPQ------------------------GSFIINGAERVIVNQLHrspgicfessfhsngktlysfriipdrgswl 171
                     ...7999****************........................************************************************ PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      CCG91791.1 172 evafdsndllyvyldrrkkrrkflittllralaaalsgsssplgtggdeeiirlfytveeinlsegieeekvatkvlvnevrdpnnpevvlaray 266
                     *********************************************************************************************** PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      CCG91791.1 267 epvtrsvvrqlldlgiktiqvvdvqyddtlikcikkdptkdpiealkeiyrrlrpgdpptesnaklllkrllldpkrydlgrvgryklnqklniq 361
                     *********************************************************************************************** PP

                     ..........................................XHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSSSHHHHSCSHHHH CS
                     ..........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1 156 ..........................................laGeLlaslfrvllkklerdvkerlqksleklddlmlqllvnakpit 202
                                                                +GeL+a++ r++l++ er vker+     + + +++q+l+n k ++
      CCG91791.1 362 vdpeiriltwedlvaatryliklkkgegitddidhlgsrrvrAVGELVANQCRMGLARTERLVKERMTLFDVNTEGMTPQKLINPKALS 450
                     *******************************************************************444344446999***9988776 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.2   8.6e-05      0.14      18      31 ..     730     743 ..     729     744 .. 0.95
   2 ?    2.5   0.1     0.083   1.3e+02      19      31 ..     831     843 ..     830     844 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.6e-05
  Biotin_lipoyl_2  18 VkdGqrVkaGdvLa 31 
                      Vk Gq+Vk+Gd+La
       CCG91791.1 730 VKKGQVVKKGDILA 743
                      9************8 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.083
  Biotin_lipoyl_2  19 kdGqrVkaGdvLa 31 
                      + G +Vk Gd+L+
       CCG91791.1 831 RVGAEVKPGDILV 843
                      6799*******95 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.7e-05     0.061      67     122 ..     884     943 ..     861     944 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.7e-05
         OEP  67 vgltlsqplfdg....gkrrarvkaakaqleaaeaqleqarqqlrlevaqaylqlllake 122
                 +g+ + + + +g     k + +  +ak++++  e+++++ +++lr+e+ qa+ ++ll+++
  CCG91791.1 884 YGIVMDVRVSSGtarvRKEKINASEAKQKIKEIEERYDKKEEELREELTQALSNILLNEK 943
                 6666666666666666788889999******************************99876 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.013        21      33      64 ..     197     228 ..     197     307 .. 0.76
   2 ?    5.7   0.9     0.011        18     145     197 ..     903     936 ..     853    1024 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.013
      AAA_23  33 TTildAiklaLygetprlsrksgrgfeksdve 64 
                 TT+l+A+  aL g +++l+++ ++ + +  ++
  CCG91791.1 197 TTLLRALAAALSGSSSPLGTGGDEEIIRLFYT 228
                 9*****************99885555433333 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.011
      AAA_23 145 efelkdkkerleelekeleeledekkllekleqekekekeleeleeeleeilk 197
                 +++ ++ k++++e+e+                    + k+ eel+eel+++l+
  CCG91791.1 903 KINASEAKQKIKEIEER-------------------YDKKEEELREELTQALS 936
                 22222222222222222...................33344444444444433 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.3   5.4e+03      25      53 ..     278     305 ..     269     310 .. 0.77
   2 ?    0.7   0.0      0.38   6.2e+02      22      81 ..     530     588 ..     525     589 .. 0.83
   3 ?    8.7   0.0    0.0012         2      55      83 ..     705     733 ..     688     736 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.3
                 HHHTS-TTSEEEEECCCCEEEEEEEBSTT CS
     CDC48_N  25 eelglepgdvveiegkrkTvaivwpaepe 53 
                  +lg+++++vv+++ +  T  +++  +p 
  CCG91791.1 278 LDLGIKTIQVVDVQYDD-TLIKCIKKDPT 305
                 57899999**9999888.77777666665 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.38
                 HHHHHHTS-TTSEEEEECCCCEEEEEEEBSTTSTTTTEEEE-HHHHHHHT--TTEEEEEE CS
     CDC48_N  22 edmeelglepgdvveiegkrkTvaivwpaepedegkgiIrmdgvtRknagvsiGdkVtVr 81 
                 ++++e+g+ +  + ++++ + T  iv+  ++++e +++I+m + + +  g  ++++V Vr
  CCG91791.1 530 SRFNEYGILETPYRKVVNGKVTNEIVYFTADQEE-NYVIAMANTAVSDDGTILDQRVAVR 588
                 5678888888888888887779999998888866.9*****9999999999999999887 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0012
                 TTTTEEEE-HHHHHHHT--TTEEEEEEEE CS
     CDC48_N  55 egkgiIrmdgvtRknagvsiGdkVtVrka 83 
                 ++ gi ++++++R+nag  i++k +V+k 
  CCG91791.1 705 KEVGIYKLNKFMRSNAGTCINQKPIVKKG 733
                 3579999***************9999885 PP

>> Adhesin_P1_N  Adhesin P1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   0.00023      0.37      32      59 ..     905     932 ..     886     937 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
  Adhesin_P1_N  32 taeeadaKkaeIkaDYnkQakeikaatd 59 
                   +a+ea++K +eI++ Y+k+++e+++   
    CCG91791.1 905 NASEAKQKIKEIEERYDKKEEELREELT 932
                   789********************99844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1058  (0.0590105); expected 358.6 (0.02)
Passed bias filter:                      774  (0.0431703); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.49
# Mc/sec: 7846.23
//
Query:       CCG91792.1  [L=129]
Description: 50S ribosomal protein L7/L12 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-27   93.5  10.1    7.2e-27   93.5  10.1    2.2  2  Ribosomal_L12    Ribosomal protein L7/L12 C-terminal domain
    1.2e-18   66.5   6.2    1.2e-18   66.5   6.2    2.7  3  Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
  ------ inclusion threshold ------
      0.014   16.0   5.6      0.014   16.0   5.6    2.5  2  Ribosomal_60s    60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.4     0.064   3.8e+02      25      59 ..      14      28 ..       6      54 .. 0.70
   2 !   93.5  10.1   1.2e-30   7.2e-27       1      67 []      62     129 .]      62     129 .] 0.96

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.064
                   --HHHHHHHHTTTTSTEEEEE-HHHHHHHHHHHHC CS
  Ribosomal_L12 25 lgLkeaKdlVeaapkvvkegvskeeAeeikkkLee 59
                   l + e                    A e+ kkLe+
     CCG91792.1 14 LTILE--------------------ASELVKKLEA 28
                   44444....................5555555543 PP

  == domain 2  score: 93.5 bits;  conditional E-value: 1.2e-30
                    EEEEEEE-TT-HHHHHHHHHHHH.---HHHHHHHHTTTTSTEEEEE-HHHHHHHHHHHHCTT-EEEEE CS
  Ribosomal_L12   1 fdViLksagakKiaVIKaVreit.glgLkeaKdlVeaapkvvkegvskeeAeeikkkLeeaGAevelk 67 
                    f V Lk++g +KiaVIK+Vr+++ glgL eaK+lVe+apk +k+gvskeeAeeikkk+e+aGA+ve+k
     CCG91792.1  62 FAVHLKEIGPNKIAVIKEVRAAIaGLGLAEAKALVEGAPKLLKDGVSKEEAEEIKKKIEAAGAKVEIK 129
                    89******************7644*******************************************9 PP

>> Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   6.2   2.1e-22   1.2e-18       3      45 ..       5      48 ..       3      56 .. 0.83
   2 !    4.5   0.0    0.0047        28       2      22 ..      77      97 ..      77      99 .. 0.89
   3 ?   -2.9   0.8      0.98   5.8e+03      16      25 ..     111     120 ..     110     122 .. 0.74

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 2.1e-22
                     HHHHHHHHTSBHHHHHHHHHHHHHHTTHHHHHHHHHH.H...HHHH CS
  Ribosomal_L12_N  3 eeiieaikeltvLElseLvkalEekFGVsAAAPvavaaa...aaaa 45
                     + +++++++lt+LE+seLvk+lE k+GVsAAAPvavaaa   +  a
       CCG91792.1  5 DTLVDQLSKLTILEASELVKKLEAKWGVSAAAPVAVAAAaptG--A 48
                     789**********************************554432..2 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0047
                     HHHHHHHHHTSBHHHHHHHHH CS
  Ribosomal_L12_N  2 ieeiieaikeltvLElseLvk 22
                     i+e+ +ai++l + E++ Lv+
       CCG91792.1 77 IKEVRAAIAGLGLAEAKALVE 97
                     578889*************97 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.98
                      HHHHHHHHHH CS
  Ribosomal_L12_N  16 ElseLvkalE 25 
                      E+ e +k++E
       CCG91792.1 111 EAEEIKKKIE 120
                      7778888877 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.0   5.6   2.3e-06     0.014      35      73 ..      19      59 ..       2      62 .. 0.53
   2 ?    2.0   1.1     0.054   3.2e+02       4      19 ..     112     127 ..     109     129 .] 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.3e-06
                   XXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s 35 ieellangaakla..aaaaaaaaaaaaaaaaaaaeekkkee 73
                     el+++ +ak    aaa++a aaaa+ +a++aae+ ++e+
     CCG91792.1 19 ASELVKKLEAKWGvsAAAPVAVAAAAPTGAQQAAEAPAEEK 59
                   35677777777667544444444444444444444444443 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.054
                    XXXXXXXXXXXXXXXX CS
  Ribosomal_60s   4 aenikkvlkaagveve 19 
                    ae+ikk ++aag++ve
     CCG91792.1 112 AEEIKKKIEAAGAKVE 127
                    7899999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1106  (0.0616878); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 928.28
//
Query:       CCG91793.1  [L=178]
Description: Ribosomal protein L10 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-20   73.3   1.1    2.3e-20   72.6   1.1    1.3  1  Ribosomal_L10  Ribosomal protein L10


Domain annotation for each model (and alignments):
>> Ribosomal_L10  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   1.1   1.3e-24   2.3e-20       3      98 ..       2     104 ..       1     105 [. 0.93

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 1.3e-24
                    CCCHCCCCCCCCCCCTTSSEEEEEE-TTS-HHHHHHCCCHHHHHGCEEEEESCCCCCCCCHCCTSS.S......SCGCCSSSEEEEEE.SS-TCHH CS
  Ribosomal_L10   3 kekKeelvkelkellkkyksvvvvdyegltvaqlqelRkklrengaelkvvKntlmrrAleetgeeek......lkellkgpvalvft.nedpval 91 
                    + +K++l ++++e +k ++ +v++d++gl+va + elRk+lr+ ++++ v Kntl+r+Al+e++          ++++lkgp+a++f+  +d++ +
     CCG91793.1   2 RTEKIALKEQISEIVKASSLIVLIDFTGLKVAVFSELRKRLRSVNCRCLVLKNTLLRLALKEAKMVMPqqndaiVESFLKGPTAILFSeAKDVAGV 97 
                    679***********************************************************9997324667889*************8889999* PP

                    HHCCCCC CS
  Ribosomal_L10  92 akvleef 98 
                    akvl++f
     CCG91793.1  98 AKVLKNF 104
                    *****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1299.19
//
Query:       CCG91794.1  [L=239]
Description: 50S ribosomal protein L1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-53  181.7   0.0    1.7e-53  181.4   0.0    1.1  1  Ribosomal_L1  Ribosomal protein L1p/L10e family


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.4   0.0   9.5e-58   1.7e-53       1     204 []      38     228 ..      37     228 .. 0.98

  Alignments for each domain:
  == domain 1  score: 181.4 bits;  conditional E-value: 9.5e-58
                   HHHHS-SSS--EEEEEEEESSS-TTSGGG--EEEEE-STSTSSCS-EEEEE-HHHHH...HHHHTT..-SEEETCHHHHHHT-HHHHHHTCCH-SEE CS
  Ribosomal_L1   1 LlkhakkkfdesveialnlttkkpkkadqrkpgkipLphplgkevkiclitkdpqaeyakeakeagriakviglkklkkkyksfeakrkllkefdlf 97 
                   L k  k++fdes+++a++l +++pk++dq+++g+++Lph+ gk++ki++++k++ ae    akeag  a+++g+++l+kk+      ++++ +fd++
    CCG91794.1  38 LQKMPKARFDESIDVAFHL-GVDPKQSDQMVRGTVSLPHGSGKSMKIAVFAKGSAAE---SAKEAG--ADYVGYEDLIKKV------QEGFTDFDVA 122
                   5677799************.*************************************...******..*************......9********* PP

                   EEEGGGHHHHHHHCHHHHGGGT-S-ECC..CT.BTS-HHHHHHHHCTTEEEEE-TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTSTTT..SGS CS
  Ribosomal_L1  98 laddrimpllpklLGkvfgkrkkmPipvltkgtvkedvkkevekalkstvvvrldkgtclsvkvGklsftaeelaeNieavvkalvekvpkk..wkn 192
                   +a+++ m++++k LGk++g+r++mP+p   +gtv+edv  +++++ k++v++++dk+++l+v  Gk+sf++e l +Ni+a+v+a+ +++p +  +k+
    CCG91794.1 123 IATPDAMQEVRK-LGKILGPRGLMPNPR--TGTVTEDVVGAIKEFRKGKVEFKVDKTANLHVVAGKASFPNEALGDNIKAIVEAVAKAKPHSskGKY 216
                   ************.***************..9*********************************************************998888*** PP

                   EEEEEEEETTS- CS
  Ribosomal_L1 193 iksiylkttmsp 204
                    +s+ ++ ++sp
    CCG91794.1 217 FQSMAISLSQSP 228
                   *********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1802.54
//
Query:       CCG91795.1  [L=141]
Description: 50S ribosomal protein L11 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-31  106.6   1.8    4.6e-31  106.4   0.5    1.7  2  Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
    1.2e-24   86.6   1.8    1.9e-24   85.9   1.8    1.3  1  Ribosomal_L11    Ribosomal protein L11, RNA binding domain
  ------ inclusion threshold ------
      0.058   12.9   0.1      0.078   12.5   0.1    1.1  1  BioW             6-carboxyhexanoate--CoA ligase


Domain annotation for each model (and alignments):
>> Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.5   7.7e-35   4.6e-31       1      65 []       2      66 ..       2      66 .. 0.98
   2 ?   -1.6   0.0      0.43   2.6e+03      39      47 ..     114     122 ..      96     128 .. 0.73

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 7.7e-35
  Ribosomal_L11_N  1 akkvvkvvklrvpaGkAtpaPplGpaLGplGlnikkfckefnkaTkdkkglripVkitvyqdrsf 65
                     ak+v ++v+l++paG+A+paPp+GpaLG++G+ni+ fckefn+aT++++g ++pV+it+y+d++f
       CCG91795.1  2 AKEVSAIVRLQIPAGQANPAPPVGPALGQHGVNIMAFCKEFNAATQKEAGNILPVVITIYKDKTF 66
                     58899**********************************************************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.43
  Ribosomal_L11_N  39 kefnkaTkd 47 
                      k+ n+ T++
       CCG91795.1 114 KDLNASTEE 122
                      677887754 PP

>> Ribosomal_L11  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   1.8   3.3e-28   1.9e-24       1      70 []      71     139 ..      71     139 .. 0.99

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 3.3e-28
                    ---SHHHHHHHHHTXSSXXSSTTTSXXEEEEHHHHHHHHHHHGGGHTXS.SHHHHHHHHHHHHCTTTEEE CS
  Ribosomal_L11   1 ktPptsylLkkaagiekgsgkpgketvGtvslkqvyeIAkiKksdlnaalsleaavksilgtArsmGikV 70 
                    k+Pp+s lLkkaa+i +gs++p++++vG+v+ +q++ I kiK +dlna+ + eaa+++i gtAr+mGi+V
     CCG91795.1  71 KSPPASILLKKAANIASGSKEPNRTKVGKVTRAQIKDIVKIKWKDLNAS-TEEAAMRMIEGTARNMGIEV 139
                    79*********************************************99.9*****************99 PP

>> BioW  6-carboxyhexanoate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.3e-05     0.078      31      93 ..      76     138 ..      70     140 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
                 HHHHHCCCTBTTB--SEEEEEEEE-SSCEEEEE----EEEEE-SSHHHHHHHHHHHHHCCT-- CS
        BioW  31 selleralehekgkadfinikvekvkeeeikkikaLpvetievkskeearelakellkeagvs 93 
                 s ll++a + + g+++  + kv kv++++ik i +++ + ++++++e a ++++ + +++g++
  CCG91795.1  76 SILLKKAANIASGSKEPNRTKVGKVTRAQIKDIVKIKWKDLNASTEEAAMRMIEGTARNMGIE 138
                 5699**************************************************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1046.23
//
Query:       CCG91796.1  [L=200]
Description: Transcription antitermination protein nusG [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-23   81.2   0.1    9.7e-23   80.5   0.1    1.3  1  NusG      Transcription termination factor nusG
    0.00018   21.3   0.7    0.00039   20.3   0.7    1.6  1  KOW       KOW motif
  ------ inclusion threshold ------
      0.012   16.1   0.1      0.025   15.2   0.1    1.5  1  ATP-cone  ATP cone domain


Domain annotation for each model (and alignments):
>> NusG  Transcription termination factor nusG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.1   1.6e-26   9.7e-23       1      94 [.      20     129 ..      20     130 .. 0.91

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 1.6e-26
                 -EEEEEEE-TTTHHHHHHHH...HHHCT-.....EEE-SCEEEEEEETTEEE....CSSTTEEEEEE---C.......HHHHHHHCSTTEEEE-EETTS CS
                 xxxxxxxxxxxxxxxxxxxx...xxxxxx.....xxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxx RF
        NusG   1 kkWYvlqvepgkekkvkenL...leeegl.....evivPaeekveirqgkkk....klfpgyifikadmnd.......kllmairktpgVtgfvrvgge 80 
                 ++WY+l+v +g+e+kvk+nL   ++ e++     evi+P+e++ e+r+gk+     kl+pgy+fi++++ d        +++ ir tpgV+gf    g 
  CCG91796.1  20 MQWYALHVLSGQEEKVKKNLekrIKTEEMqdlvgEVIIPVERVSEVRKGKRIelnrKLYPGYVFIQIQLRDssgklieRCWYFIRDTPGVIGFA--DG- 115
                 68******************999888888999******************999999************7666666777****************..55. PP

                 SCC-EB-HHHHHHH CS
                 xxxxxxxxxxxxxx RF
        NusG  81 skpvplseeevqni 94 
                 ++p p+++e+v+ +
  CCG91796.1 116 ENPLPMPKEQVEGM 129
                 59*********976 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.7   6.4e-08   0.00039       1      31 [.     148     180 ..     148     183 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 6.4e-08
                 TTSEEEESSSTTTTCEEEEEEEETTT..TEEEE CS
         KOW   1 pGdhVkVvsGphkGktGkVvkvdqhk..vrVfv 31 
                 +Gd VkV +Gp+ + +G++++vd ++   rV v
  CCG91796.1 148 VGDRVKVGDGPFLNSEGVIEEVDLERgkLRVSV 180
                 7************************98866655 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   4.1e-06     0.025      37      66 ..      28      57 ..       4      82 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.1e-06
                HHHHHHHHHHHHIIT-BHHHHHHHHHHHHH CS
    ATP-cone 37 aeeveaevrkrlrdgisteeIqdlvektli 66
                 +  e++v+k+l++ i+tee+qdlv +++i
  CCG91796.1 28 LSGQEEKVKKNLEKRIKTEEMQDLVGEVII 57
                344489*******************98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 1660.16
//
Query:       CCG91797.1  [L=100]
Description: Preprotein translocase subunit SecE [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-08   31.9  14.2    0.00016   21.5   1.8    2.9  3  SecE      SecE/Sec61-gamma subunits of protein translocation 
  ------ inclusion threshold ------
       0.19   12.0   5.7       0.13   12.5   1.2    2.0  2  DUF1430   Protein of unknown function (DUF1430)


Domain annotation for each model (and alignments):
>> SecE  SecE/Sec61-gamma subunits of protein translocation complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.7     0.083   7.5e+02      31      41 ..      11      21 ..       3      26 .. 0.54
   2 !   18.2   0.3     2e-07    0.0018       2      17 ..      34      49 ..      33      53 .. 0.95
   3 !   21.5   1.8   1.8e-08   0.00016      19      55 .]      60      96 ..      59      96 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.083
                HHHHHHHHHHH CS
        SecE 31 vfvvimglflf 41
                ++v+++++ l 
  CCG91797.1 11 IVVLFLSAALL 21
                44444444333 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 2e-07
                HCHHHHHHHHHCCCCC CS
        SecE  2 kFfkevkaElkKVtWP 17
                 F+ ev+ ElkK+tWP
  CCG91797.1 34 AFIGEVIVELKKCTWP 49
                69************** PP

  == domain 3  score: 21.5 bits;  conditional E-value: 1.8e-08
                CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SecE 19 rkEllkttvvVlvfvvimglflflvDlvfsklinlll 55
                 kEl+ +t++V + ++i+++++   D+++ +++ +++
  CCG91797.1 60 YKELIDSTLAVSIYSIILAAIVTSADFILVRVVHFII 96
                69*******************************9985 PP

>> DUF1430  Protein of unknown function (DUF1430)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2     0.026   2.4e+02       5      33 ..       9      37 ..       3      46 .. 0.52
   2 ?   12.5   1.2   1.5e-05      0.13      37      77 ..      57      97 ..      54     100 .] 0.85

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.026
     DUF1430  5 alslllivqlvllYFeqfkkkilikkihG 33
                + +++l+++  ll + + k+  li+ + G
  CCG91797.1  9 VNIVVLFLSAALLVWLWKKRGTLIRAFIG 37
                33444444444444445555555555544 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.5e-05
     DUF1430 37 fkrhkeyliiqlivllillvlifiltkekiillvvlvllli 77
                ++++ke++ ++l+v++ +++l+ i+t+ ++il+ v+  +++
  CCG91797.1 57 IRKYKELIDSTLAVSIYSIILAAIVTSADFILVRVVHFIIT 97
                689************************99988777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 720.05
//
Query:       CCG91798.1  [L=394]
Description: protein chain elongation factor EF-Tu (duplicate of tufB) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-61  206.0   0.0    5.3e-61  205.6   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    3.3e-34  117.5   0.7    7.5e-34  116.4   0.7    1.6  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    8.2e-17   61.4   7.2    3.2e-16   59.5   4.6    2.4  2  GTP_EFTU_D2  Elongation factor Tu domain 2
    2.6e-06   27.5   0.0    5.2e-06   26.5   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.026   14.4   0.1       0.11   12.4   0.0    2.0  2  RsgA_GTPase  RsgA GTPase
      0.034   13.7   0.1        0.1   12.2   0.0    1.8  2  cobW         CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.6   0.0   1.8e-64   5.3e-61       1     193 [.      10     201 ..      10     202 .. 0.95

  Alignments for each domain:
  == domain 1  score: 205.6 bits;  conditional E-value: 1.8e-64
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEE CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavl 99 
                 k+++n+g+ighvDhGKtTLt ++++ + +   +++ a   +++D+++eE+ergiTi++a++++e  ++k++++++D+PGH+d++k++i+g++++Dga+l
  CCG91798.1  10 KPHINVGTIGHVDHGKTTLTSAITFVLAKKGLAQKMAY--EQIDKAPEEKERGITINTAHVEYE--SDKRHYAHVDCPGHADYIKNMITGAAQMDGAIL 104
                 579**************************998776665..56**********************..********************************* PP

                 EEETTTBSTHHHHHHHHHHHHTTTE.EEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTB........THHHHHHHH CS
    GTP_EFTU 100 vvdaveGvepqteevlrlalkegvp.iivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkge........gvktlleal 188
                 vv+a++G++pqt+e++ la+++gvp i+vf+NK+D++ ++el e+ve   ++l      l++yg+ g+ ++p++ gSalk+          + +l+ea+
  CCG91798.1 105 VVSAADGPMPQTREHILLARQVGVPyIVVFLNKVDMVdDKELLELVELEVREL------LTQYGFPGD-KIPIIKGSALKALegdpeyekSILELVEAM 196
                 *************************************99***********9**......********6.*************888877777779***** PP

                 HHHSH CS
    GTP_EFTU 189 vellp 193
                 ++++p
  CCG91798.1 197 DNYIP 201
                 *9998 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.7   2.5e-37   7.5e-34       1     111 [.     298     392 ..     298     393 .. 0.97

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 2.5e-37
                  --EEECCEEEEEEESSS.....SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEE CS
  GTP_EFTU_D3   1 sikphtkfeAqvyileke...rhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFa 95 
                  +i+ph+kf+Aqvy+l+ke   rht++++gYrp++++rt+dvtg +v+L       +e+v     e+v+pGdnv+++veli+ ia+ek +      rFa
   CCG91798.1 298 TITPHHKFKAQVYVLKKEeggRHTAFFNGYRPQFFFRTTDVTG-TVTL-------KEGV-----EMVMPGDNVEFTVELISSIAMEKSM------RFA 376
                  589****************************************.9***.......8888.....9************************......*** PP

                  EECTTCEEEEEEEEEE CS
  GTP_EFTU_D3  96 iReggrTvaaGvvtei 111
                  iRegg+Tv+aGvvtei
   CCG91798.1 377 IREGGKTVGAGVVTEI 392
                  ***************9 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   4.6   1.1e-19   3.2e-16       1      73 [.     225     293 ..     225     294 .. 0.95
   2 ?    2.1   0.0     0.089   2.7e+02      33      60 ..     336     363 ..     308     391 .. 0.67

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 1.1e-19
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  Gtv++grv++Gtlk+ +ev+i+g  +t    i+t ++ +e+f++ +d+a+ag+n+G+++++++ +d +++G+++
   CCG91798.1 225 GTVVTGRVERGTLKRMEEVEIVGlRPT----IKTVVTDIEMFRKTLDTAEAGDNVGILLRGIKKDD-VERGQVV 293
                  9**********************8887....558********************************.*****98 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.089
                  EEEEEEEEETEEESEEETTSEEEEEEEE CS
  GTP_EFTU_D2  33 trissletfhededeavaganaGvivai 60 
                  t+++++ t +e ++ +++g+n+ + v +
   CCG91798.1 336 TDVTGTVTLKEGVEMVMPGDNVEFTVEL 363
                  5666666666666666666665544443 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.7e-09   5.2e-06       2     112 ..      15     134 ..      14     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.7e-09
                 EEEEESTTSSHHHHHHHHH..........T....S..TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt..........g....e..kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvd 84 
                 v+ +G+   GK+tL +a+t          +    +  ka  +++ g T+++ + +++ +++++  vD+pG  +       +++ +    ++d ++lvv+
  CCG91798.1  15 VGTIGHVDHGKTTLTSAITfvlakkglaqKmayeQidKAPEEKERGITINTAHVEYESDKRHYAHVDCPGHAD------YIKNMITGAAQMDGAILVVS 107
                 899****************77777666651555434589999999***********9999**********333......466666777789*******9 PP

                 TTTTCSHHHHHHHHHHHHHTTSEEEEEE CS
    MMR_HSR1  85 aseeklkpldeeleelleeakkplilvl 112
                 a+ ++  p+ +e   l ++ + p+i+v+
  CCG91798.1 108 AA-DGPMPQTREHILLARQVGVPYIVVF 134
                 88.5566666666666677888887754 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.78   2.3e+03      49      58 ..      32      41 ..      10      78 .. 0.61
   2 ?   12.4   0.0   3.7e-05      0.11      13      71 ..      96     153 ..      76     179 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.78
                 EEEEEE-GGG CS
  RsgA_GTPase 49 pvivlnKiDl 58
                 ++ vl K  l
   CCG91798.1 32 ITFVLAKKGL 41
                 2334444444 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 3.7e-05
                  EES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHH CS
  RsgA_GTPase  13 vaNvdqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkee 71 
                  +a +d +++vvs++ +   +++ + +L++ +     +v+ lnK+D+++++e le ++ e
   CCG91798.1  96 AAQMDGAILVVSAA-DGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDKELLELVELE 153
                  8999********99.55566666777665555555778889*********944443333 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       0.7   2.1e+03       9      21 ..      21      33 ..      15      52 .. 0.68
   2 ?   12.2   0.0   3.5e-05       0.1     104     169 ..      91     157 ..      80     163 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.7
                TTCCHHHHHHHHH CS
        cobW  9 lGsGKTtLlnhll 21
                +  GKTtL ++++
  CCG91798.1 21 VDHGKTTLTSAIT 33
                5569999987776 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.5e-05
                 HHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEE.EE-HHHHCHC..HHHHHHHHHHH CS
        cobW 104 eelksdltldavvavvDaknleaeeekieekaedqlaaadllv.lnKtDlldeeallekleerlrql 169
                 + ++ ++++d+ + vv+a+     +++++ ++ +q+ +  ++v lnK+D++d+++lle +e ++r+l
  CCG91798.1  91 NMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVfLNKVDMVDDKELLELVELEVREL 157
                 56778999**********999889999999999***999876549**********999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2935.08
//
Query:       CCG91799.1  [L=60]
Description: hypothetical protein MFUM_210040 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 485.26
//
Query:       CCG91800.1  [L=150]
Description: hypothetical protein MFUM_220001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   15.4   0.8      0.028   14.7   0.8    1.4  1  OrfB_IS605  Probable transposase


Domain annotation for each model (and alignments):
>> OrfB_IS605  Probable transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.8   1.5e-06     0.028      11      70 ..      43     117 ..      28     136 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-06
  OrfB_IS605  11 pkpkgnkaagiDlGinnLatvvtedgtwflykg..rrlksdykylakeiaelqs.......klkkskn.........y 70 
                 pk   ++ +giD+G++   t   ++   ++ kg  + l +  k+++++ ++ q+       +++k+k          +
  CCG91800.1  43 PKRLDGEIVGIDMGLSEAFTDDKGK---KYGKGvgKVLAKLSKQYTEKGRKRQKlhaickkTKDKAKArgvgknnlgR 117
                 55667889**************999...55555545566666666666555555110000044444434444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       863  (0.0481343); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1096.69
//
Query:       CCG91801.1  [L=65]
Description: hypothetical protein MFUM_220002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 470.71
//
Query:       CCG91802.1  [L=33]
Description: hypothetical protein MFUM_220003 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       164  (0.00914719); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 245.88
//
Query:       CCG91803.1  [L=78]
Description: hypothetical protein MFUM_220004 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 594.10
//
Query:       CCG91804.1  [L=450]
Description: Exodeoxyribonuclease 7 large subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-87  292.3   0.0    7.3e-87  291.8   0.0    1.2  1  Exonuc_VII_L     Exonuclease VII, large subunit
    1.4e-29  102.1   0.0      3e-29  101.0   0.0    1.6  1  tRNA_anti_2      OB-fold nucleic acid binding domain
      2e-09   37.3   0.0    4.7e-09   36.1   0.0    1.6  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
      0.036   14.1   0.1          1    9.4   0.0    2.4  2  SSB              Single-strand binding protein family
      0.094   12.7   8.5      0.022   14.7   3.2    2.2  2  YscO             Type III secretion protein YscO
       0.12   12.0   0.0       0.21   11.3   0.0    1.4  1  CDC24_OB3        Cell division control protein 24, OB domain 


Domain annotation for each model (and alignments):
>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.8   0.0   2.4e-90   7.3e-87       1     301 [.     143     433 ..     143     435 .. 0.94

  Alignments for each domain:
  == domain 1  score: 291.8 bits;  conditional E-value: 2.4e-90
  Exonuc_VII_L   1 lfdeerkkplpklpkrigvvtsptgaairDilrtlkrrgplveillfpalvQGeeaaaeiikalekanalkeaDvliiaRGGGSleDLwaFndeela 97 
                   lfd +rkk+lp +p++ig++ts +ga+i+D+ r+l+rr p ++i++ +++vQG++aa ei++a+++++  +e+D+l++aRGGGSleDLwaFn+e++a
    CCG91804.1 143 LFDLSRKKKLPLFPEKIGIITSLKGAVIQDFSRILQRRAPGIRIYVRDVRVQGNGAAVEIARAIDEFSLAHEVDILVLARGGGSLEDLWAFNEEQVA 239
                   79*********************************************************************************************** PP

  Exonuc_VII_L  98 raiaaskiPvisavGHEtDttiaDfvAdlrapTPtaaAelvvpdkaeleeqleelerrlekaikrlleekkqrlekl..asrlkspeellerkrqrl 192
                   ra+++++iP++savGHEtD+tiaDfvAd+rapTP+aaAe+v++d +e++++le+l++r+ +   + +e  k+rlek+  +s+l++p++ +   rq++
    CCG91804.1 240 RALFRCRIPTVSAVGHETDFTIADFVADVRAPTPSAAAEIVSRDWEEWRQELEHLRQRIYRFSLQFIEIWKERLEKIrsSSSLAEPSRYVGLLRQNV 336
                   ***************************************************************************994345568************* PP

  Exonuc_VII_L 193 deleerleralkkqlkkkrerleelkerlkekleekkerlkklkerlelleekkerleeleeklealsplkvLkrGyaivrkedgkvvtsakdlkkg 289
                   d+le++le+a   ++++ r++  +l+ rl           ++  + ++++++  e+l+   ++le++sp+ vL rGya+ ++++g+++++a ++ +g
    CCG91804.1 337 DMLEQSLEKAAMVAVERIRTKQAQLRLRL-----------QSF-DPMQHIRSLAEALKLWGARLESVSPQVVLDRGYAMAFDQQGQLLKDAGKVVSG 421
                   *********88888888777777777333...........233.33446889999***************************99************* PP

  Exonuc_VII_L 290 deleirladgev 301
                   +++ + l++g++
    CCG91804.1 422 EKVIVVLSKGKL 433
                   ********9986 PP

>> tRNA_anti_2  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.0     1e-32     3e-29       1      92 [.      27     117 ..      27     120 .. 0.95

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 1e-32
  tRNA_anti_2   1 lsVseltraikelleaelkkavwvrGeisnlkr.kasghvYftLkDekakisavifrsraaklkftledGmkVlvkgrlsvYeprGsyqlive 92 
                  ++Vselt++i+ lle ++ ++vwv Geisnl r ++sgh+YftLkDe+a i+av+frs+a+kl+f+l+dG +V+v+g l+vYe +G+yql+v 
   CCG91804.1  27 WTVSELTKKIRFLLEGQI-GEVWVLGEISNL-RiPSSGHCYFTLKDETAVINAVFFRSDAQKLTFELKDGLSVVVRGLLTVYETKGQYQLRVL 117
                  69****************.67**********.6588******************************************************986 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.6e-12   4.7e-09       1      72 [.      47     118 ..      47     121 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.6e-12
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEEC..TTSSEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrr..pggelelkvee 72 
                      V+v G++++ +   ++++++++l+D+t+ i++v+fr++a+kl  +lk G  v v+G ++ +  +g +++l v e
       CCG91804.1  47 VWVLGEISNLR-IPSSGHCYFTLKDETAVINAVFFRSDAQKLTFELKDGLSVVVRGLLTVYetKG-QYQLRVLE 118
                      8999******8.88899********************************************6444.5*999876 PP

>> SSB  Single-strand binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00034         1      44      86 ..      69     111 ..      66     119 .. 0.91
   2 ?    1.9   0.0     0.075   2.2e+02      24      81 ..     297     357 ..     290     363 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00034
                 EEEEEEEEEEEEHHHHHHHHHH--TT-EEEEEEEEEEEEEECT CS
         SSB  44 deetewhrvvvfgklaevvaeylkkGslvyveGrlqtrkyedq 86 
                 ++et  ++ v+f+  a+ ++  lk G +v+v G l++++++ q
  CCG91804.1  69 KDETAVINAVFFRSDAQKLTFELKDGLSVVVRGLLTVYETKGQ 111
                 578999******************************9998876 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.075
                 EEEEEEEEEEEEEEE.....TTCCEEEEEEEEEEEEEHHHHHHHHHH--TT-EEEEEEEEEEE CS
         SSB  24 avarftlatnrrfkd.....qegekdeetewhrvvvfgklaevvaeylkkGslvyveGrlqtr 81 
                 +++rf+l++ + +k+     +++ +  e +   v + ++++++++++l+k + v ve r++t+
  CCG91804.1 297 RIYRFSLQFIEIWKErlekiRSSSSLAEPSR-YVGLLRQNVDMLEQSLEKAAMVAVE-RIRTK 357
                 5678888888888887765422222222222.367788899**********999999.66665 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2      0.25   7.6e+02     106     130 ..     117     141 ..     105     151 .. 0.66
   2 ?   14.7   3.2   7.3e-06     0.022      37     111 ..     281     366 ..     266     382 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO 106 arkelqearraveKfaelarlvrae 130
                 ++++ + a   +eKf+el+r++++e
  CCG91804.1 117 LEAKKKGAGSLLEKFEELKRKLSQE 141
                 4444444555578888888888877 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 7.3e-06
                 HHHHHHHHHHHHHHHHHHHH.HHHTTT--HHHHHHHH.........HHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
        YscO  37 resladyrawraqeearlya.eiigklvllkelekvk.........qqvalLrekeaelekqveeakq.qleaerealrqarkelq 111
                 +++ +++r+ ++   +r+y+ +++   +  ++lek++         + v+lLr+++  le+ +e+a+   +e+ r++ +q+r  lq
  CCG91804.1 281 SRDWEEWRQELEHLRQRIYRfSLQFIEIWKERLEKIRsssslaepsRYVGLLRQNVDMLEQSLEKAAMvAVERIRTKQAQLRLRLQ 366
                 4455555555556668***85678889999***************999*****************986156777888888887776 PP

>> CDC24_OB3  Cell division control protein 24, OB domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     7e-05      0.21       8      84 ..      46     117 ..      40     152 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7e-05
   CDC24_OB3   8 nvtLlGrvvaifreknsekkkmdryslrieDttGaidatlw.eeagklhfkrlrvGhlvllsgLatsetkqsk.klevs 84 
                 +v++lG + ++   + s+       +++++D+t+ i+a+ + + a+kl f  l+ G  v++ gL t  +++++ +l v+
  CCG91804.1  46 EVWVLGEISNL--RIPSSG----HCYFTLKDETAVINAVFFrSDAQKLTFE-LKDGLSVVVRGLLTVYETKGQyQLRVL 117
                 79*********..445544....2579**********98873578899999.***********9887666444355444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3316.55
//
Query:       CCG91805.1  [L=202]
Description: Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-54  182.2   0.0    8.5e-54  182.0   0.0    1.0  1  Formyl_trans_N  Formyl transferase


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.0   0.0   4.7e-58   8.5e-54       2     181 .]       8     189 ..       7     189 .. 0.97

  Alignments for each domain:
  == domain 1  score: 182.0 bits;  conditional E-value: 4.7e-58
                     EEEEEESESSHHHHHHHHHHHHTTSECEEEEEEESCTTEHCHHHHHHCCHCCCECHHCCSCCC..CCCCHHHHHHHHCTT-SEEEEES--S---H CS
  Formyl_trans_N   2 kivvlisgtgsnlqalldalkkgsleadvvlvvsnkdkaaglekaeaasiptkvfeekklepr..sqfeeelaeelkelkadlivlagymkllpk 94 
                     +i+vl+sg+gsn+  + +a++ g+l a + +vvs++++a  ++ka++ +ipt v+ + k++       eeel++ lk+++ +l+vlag+m++l +
      CCG91805.1   8 NIAVLGSGKGSNFLSIAKAVSMGELPARICVVVSDNPEALIIKKATELGIPTAVLPRGKYKTWlePWIEEELVRILKKYHSELVVLAGFMRVLKE 102
                     8*********************************************************9877632459*************************** PP

                     HHHHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N  95 elvqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehkalveal 181
                     ++++a++++ +niHpSLLP+fkG +a ++alea+++etG+tih+v  e+D G+i+aq+kv++++ dt+e+l +r+++aeh++++++l
      CCG91805.1 103 TFLNAFEGRTVNIHPSLLPAFKGKEAWKAALEACVTETGCTIHWVSKEVDGGKIIAQSKVPVLPGDTSESLHARIQQAEHELYPKVL 189
                     ************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1495.73
//
Query:       CCG91806.1  [L=173]
Description: ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-13   50.6   0.0    2.8e-13   50.3   0.0    1.1  1  CTP_transf_like  Cytidylyltransferase-like
       0.01   15.8   0.0      0.016   15.1   0.0    1.3  1  FAD_syn          FAD synthetase


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   3.1e-17   2.8e-13       2     115 ..      37     148 ..      36     167 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 3.1e-17
                      EEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-...SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHHHHHHHTTTTEEEEEEEHH CS
  CTP_transf_like   2 agGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkk...kplasaeeRlemlelakevdevisvdpweltrevlkklkpdklylvigad 92 
                      ++G+FD++H+GHl+ll++akkl++  l+vg++ d+++k  k   +p++s+ eR   +  +k+vd v  + +   t  +l   +p   + v gad
       CCG91806.1  37 TNGCFDLFHFGHLTLLREAKKLGDF-LWVGINGDQSVKELKgaeRPYFSEWERATIVGSFKYVDAVTIFPEARATT-FLSLVRPV--IYVKGAD 126
                      79***********************.**************669**********************99999999995.99999999..9*****9 PP

                      HHHHHHCHHHHHHHHHHHHHEEE CS
  CTP_transf_like  93 vledfsewkeleeilgnvklvvv 115
                        +++   +e +e+l++++  ++
       CCG91806.1 127 YSSQT-IHQEEKEVLERCQSLIK 148
                      88775.45566666666655554 PP

>> FAD_syn  FAD synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.8e-06     0.016       5      32 ..      31      58 ..      27      62 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.8e-06
     FAD_syn  5 degavvtlGnFDGvHlGHqallkkavea 32
                 ++ vvt G FD +H GH +ll++a+++
  CCG91806.1 31 ARSIVVTNGCFDLFHFGHLTLLREAKKL 58
                6789*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1449.93
//
Query:       CCG91807.1  [L=463]
Description: fumarase C (fumarate hydratase Class II) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.2e-101  340.3   0.0   1.4e-101  340.0   0.0    1.1  1  Lyase_1      Lyase
    1.8e-19   69.9   1.9    2.2e-19   69.6   0.3    2.1  2  FumaraseC_C  Fumarase C C-terminus


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.0   0.0  1.6e-105  1.4e-101       1     312 []      12     342 ..      12     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: 340.0 bits;  conditional E-value: 1.6e-105
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHC.....HHHHHHHHHHHTTSST....HHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHH CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedik.....alaalkkaaakanvdl....keeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnev 90 
                 g+++v++dk++g++t+rs+ +f +++e+       ala++kkaaa  n++l    +e+ + i+ka+de+ + g+ldd+f+l v+q+gsgt++nmn nev
  CCG91807.1  12 GTIDVPSDKYYGAQTARSLIHFSIGQEKMPievirALALIKKAAALTNAELkllsEEKKKWILKACDEIYQ-GQLDDHFPLHVWQTGSGTQTNMNCNEV 109
                 6899*********************7776688999****************99*99999************.*************************** PP

                 HH....HHTT......HSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHH CS
     Lyase_1  91 ig....ellg......ekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaeal 179
                 i+    el g       +v+pnd+v+ +qSsnD++p a+++a++ ++++ Llp++ +L+da++ k+kef +++kiGrThl dAtP+  gqe+s+y+ ++
  CCG91807.1 110 IAnranELAGfplgskSPVHPNDDVNRCQSSNDVFPSAMHIAAALSIHNFLLPEVSKLRDAIESKSKEFFHIIKIGRTHLMDATPISVGQEFSGYVFQI 208
                 **98888888*****99********************************************************************************** PP

                 HHHHHHHHHHHHHHTCEETTTTTTTSSTTTSCCTHHHHHHHHHHHHHCST.EESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT.TSS CS
     Lyase_1 180 erdrerlkellkrllvellgggtavgtglnadpefaelvakelakvtglp.vkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssge.agl 276
                 ++ +++++ +l + +++l+ ggtavgtg+na+p f e vak++a+ t lp ++ +n+f  ++ +  ++ l++alk la+sL+k+a D+rl+ sg+ +gl
  CCG91807.1 209 DMGISHIRSSL-EKVYGLAIGGTAVGTGINAHPLFGEEVAKKIAQWTNLPfFSVQNKFAYLAGHEPLLALSSALKGLAASLFKIASDIRLMGSGPrCGL 306
                 ***********.9999*********************************************************************************** PP

                 EEEEGCCTSSC-TTSTTTEBTHHHHHHHHHHHHHHH CS
     Lyase_1 277 velslaesepGSSiMPgKvNPvqlElltgvagrvvG 312
                  el l+e+epGSSiMPgKvNP+q+E+l +v+  v+G
  CCG91807.1 307 AELILPENEPGSSIMPGKVNPTQAEALSMVCIEVMG 342
                 ***********************************9 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.76   6.8e+03      34      42 ..      61      69 ..      49      76 .. 0.63
   2 !   69.6   0.3   2.5e-23   2.2e-19       1      54 []     408     461 ..     408     461 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.76
                 HTT-.-HHH CS
  FumaraseC_C 34 elgllteee 42
                 el+ll+ee+
   CCG91807.1 61 ELKLLSEEK 69
                 566777776 PP

  == domain 2  score: 69.6 bits;  conditional E-value: 2.5e-23
                  GGGGGHHHHHHHHHHHHHHHHHHHT--HHHHHHHTT-.-HHHHHHHT-HHHHH. CS
  FumaraseC_C   1 LVTaLnphIGYekAakIAkeAlkegktlreavlelgllteeeldelldpekMtg 54 
                  L+T+L+p+IGY+ AakI+k+A++e+ +l+ a+++lg+lt+ee+d+ ++pekM+g
   CCG91807.1 408 LITVLTPKIGYDLAAKIVKKAYQENCSLKTAAIALGILTAEEYDRYVQPEKMIG 461
                  89**************************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3488.63
//
Query:       CCG91808.1  [L=283]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-62  210.8   1.0    3.5e-62  209.9   1.0    1.4  1  PPK2      Polyphosphate kinase 2 (PPK2)
  ------ inclusion threshold ------
      0.035   13.3   0.0       0.14   11.3   0.0    1.9  2  DUF815    Protein of unknown function (DUF815)
      0.065   13.8   0.4          1    9.9   0.4    2.3  1  AAA_18    AAA domain


Domain annotation for each model (and alignments):
>> PPK2  Polyphosphate kinase 2 (PPK2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.9   1.0   5.8e-66   3.5e-62       5     223 ..      31     261 ..      27     267 .. 0.90

  Alignments for each domain:
  == domain 1  score: 209.9 bits;  conditional E-value: 5.8e-66
                 HHHHHHHHHHHHHHHHHHHSGGGGG-E.EEEEEEESTTS-HHHHHHHHHTTS-GGG-EEEE--S--HHHHTS-TTHHHHTT---TT-EEEEES-GGGGG CS
        PPK2   5 deyeeelaklqielvklqekvkaegkk.lvvifegrDaAGKgGaikrvtealnprvarvvalkaPteeEksqwylqRyvehlPakgeivlFdRswYnra 102
                 +e   +l +   +++ lq++ +a+++  l++i++g D AGK+  ik+v   lnp++++v ++k+Pt eE ++++l+R +++lPakg+i++F+Rs+Y++ 
  CCG91808.1  31 EEALTKLGADIEKMISLQDRFYARNTYsLLIILQGMDCAGKDSLIKHVLSGLNPQGVEVYSFKKPTVEELEHDFLWRCWKRLPAKGHIGIFNRSYYEEL 129
                 4445555566678999****99988766*********************************************************************** PP

                 THHHHH...........TSS-HHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSS-CCC---CCCCCHHHCHHHHHHHHHHHHHH CS
        PPK2 103 gvervm...........gfctdkeaerflreipefErmlvesgillvKfwlsiskeeqleRfkeRredPlkqwKlsplDlksrekWddytkakeemlar 190
                 +v+rv               ++k +e+++  i++fE+ lve+g+l++Kf+l++sk+eq +R+ eR+e   kqwK+s  Dl +r+kW++y +a+e+ l +
  CCG91808.1 130 LVTRVHpellekerlpqQTFDEKFWEKRFSAINHFEQFLVENGLLIIKFFLHLSKKEQDKRLAERIERDDKQWKISFSDLMERKKWHEYISAYEKLLVE 228
                 *****6322222222223456677999************************************************************************ PP

                 H--SSS-EEEEE-SSHHHHHHHHHHHHHHHHHH CS
        PPK2 191 tdteeaPWivveaddKkrarlnvirtllkalky 223
                 t+t+++PW++++ad+K++ +l   +++++++++
  CCG91808.1 229 TSTKHCPWYIIPADHKWYSQLLAASIIVEKMEA 261
                 ***************************999986 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.3e-05      0.14      36      96 ..      40     101 ..      17     115 .. 0.80
   2 ?   -1.2   0.1      0.15   8.8e+02     175     233 ..     148     208 ..     130     222 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.3e-05
      DUF815  36 qkealventeqf.leglpannvLLwGarGtGKSslvkallneyaeegLrlievekedlkelp 96 
                   e++++   +f ++++ +  ++L G   +GK sl+k +l+ ++ +g+ +   +k +++el+
  CCG91808.1  40 DIEKMISLQDRFyARNTYSLLIILQGMDCAGKDSLIKHVLSGLNPQGVEVYSFKKPTVEELE 101
                 55555555555514556677899**************************9999999998886 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.15
      DUF815 175 aveeklsLsdRFGlwlgFykldqeeYleiveklakklglelek...eeleeeAlewalergs 233
                 + +ek     RF     F+++  e+ l i++ +++  + e +k   e++e++  +w+ + ++
  CCG91808.1 148 TFDEKF-WEKRFSAINHFEQFLVENGLLIIKFFLHLSKKEQDKrlaERIERDDKQWKISFSD 208
                 555554.4567877778888888888888887776665555555668888888888776555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.4   0.00017         1       1     121 [.      61     202 ..      61     216 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00017
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf............gvnlrdvakenglllevdpe.aldeskrldedkldklldaleenssaleegknlvidghlael 86 
                 I+l G+ ++GK +l k++ + l+             +             +e +++  ++  krl  +    ++ ++++++      + l++  ++ el
  CCG91808.1  61 IILQGMDCAGKDSLIKHVLSGLNPqgvevysfkkptV-------------EELEHDfLWRCWKRLPAKG---HIGIFNRSYY-----EELLVTRVHPEL 138
                 7777888888888888774443224333333322220.............2222222222223333333...3333333322.....222333322222 PP

      AAA_18  87 eseaakdikk.............................vvLtaspeelleRlekRgyeeakik 121
                 ++ ++   ++                             ++L++s++e  +Rl++R ++++k++
  CCG91808.1 139 LEKERLPQQTfdekfwekrfsainhfeqflvenglliikFFLHLSKKEQDKRLAERIERDDKQW 202
                 222222222223333333334444444444444444444*******************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1943.45
//
Query:       CCG91809.1  [L=556]
Description: Glucan phosphorylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-38  132.9   0.0    3.6e-23   81.8   0.0    3.1  3  Phosphorylase  Carbohydrate phosphorylase


Domain annotation for each model (and alignments):
>> Phosphorylase  Carbohydrate phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   8.9e-12   1.6e-07      23      96 ..      14      85 ..       7     137 .. 0.73
   2 !   17.5   0.0   5.5e-08   0.00098     219     282 ..     157     221 ..     148     227 .. 0.88
   3 !   81.8   0.0     2e-27   3.6e-23     321     581 ..     239     472 ..     228     544 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 8.9e-12
                   SHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEE.ETTEEEEEEEBTTCCG-TT-EE-GGG-EEEEESCEEE CS
  Phosphorylase 23 GGLGRLAacfldslatlelpavGygirYeyGlFkQki.edgaqveepdeWlkkgnpweiereekavevkfggkve 96
                   GGLG LA   l ++a++++++vG+++ Y+ G F Qki e+g+q eep eW  ++  + +e+ + +v++++ ++v 
     CCG91809.1 14 GGLGVLAGDTLSAAASVGFSMVGVSLLYRKGYFFQKIdEQGVQREEPVEWAVDD--FLVEQ-QPRVTIQLENRVV 85
                   9************************************888**********9853..44443.3445555555544 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 5.5e-08
                    EEEEESSTTTTHHHHHHHHHHHCC-..--HHHHHHHHCCCEEEEE--SSGGGS-EEEHHHHHHHSH CS
  Phosphorylase 219 aiqlnDtHPalaipelmriLvdeeg..lewdeaweitkktfaytnhtvlpealekwpvellekllp 282
                     +++n+ H +l   el+r + ++++  ++w++ +e +++ + +t ht ++   +k+p++l++++lp
     CCG91809.1 157 RFHMNEGHSSLLTLELLREISETKHepISWED-IEAVRALCVFTTHTPVASGHDKFPLSLVKEVLP 221
                    579***************99766543388987.78899***************************9 PP

  == domain 3  score: 81.8 bits;  conditional E-value: 2e-27
                    EEEHHHHHHHCCSEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-CHHHCCCTSHHHHHHHHHHCSSGGCCSGGGGGGGGGGCCSHHHHHH CS
  Phosphorylase 321 kvrmanlaivgshsvngvaalhsellkkevlkdfyelypekfnnktnGitprrwlllanpelaelitekigeewvkdleeLkkLekladdkeflee 416
                     ++m +la+  sh +ngva+ hse+   ++l + ye     +  +tnG+    w+ +    ++el +++i  +w +d+ +++   +       l++
     CCG91809.1 239 FLNMTYLALNLSHYINGVAKRHSEVS--RMLFSHYE-----IDAITNGVHVPSWVSQ---PIQELFDKHI-PHWREDIFSIRYAIA-----IPLKQ 318
                    579*********************74..44445555.....5789*********986...5667778888.58***9998875444.....35788 PP

                    HHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTS----EEEEEE----TT-HHHHHHHHHHHHHHHH CS
  Phosphorylase 417 laeikqenKerlaelikekegvevdpeslfdvqvkRlheYkRqlLnvLhiitlYneikenpekkvvprtvifggkaapgYalAkkiiklinsvaev 512
                    + e++  nK++l +++++++++ ++ + +     +R+  YkR  L ++   +  +++k+  +k++ p  ++f+gka p     kkii+ i+++ + 
     CCG91809.1 319 IWEAHLINKRHLLDFVNRQKNIGMEIDNFTIGFARRMTAYKRPEL-IF---SNLDRLKSI-AKAIGPLQLVFAGKAHPKDEEGKKIIQRIHAIHSS 409
                    889999****************999999877889**********9.45...555555555.3569***************************9865 PP

                    HCC-TTTCCCEEEEEETT-SHHHHHHHGGG-SEEEE---TTTSSS-SHHHHHHHTT-EEEEESSTCHHH CS
  Phosphorylase 513 vnndpevkdklkvvflenynvslaekiipaadlseqistagkeASGTgnmkfmlnGaltigtlDGanvE 581
                          ++ ++k+vfleny+ +la++i+++ dl  +  +   eASGT+ mk ++nG   ++ lDG  +E
     CCG91809.1 410 ------LSPEVKLVFLENYDLALAKRIVAGVDLWLNNPLPPLEASGTSGMKAAINGVPSLSVLDGWWIE 472
                    ......67889******************************************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3642.77
//
Query:       CCG91810.1  [L=439]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-101  339.9   0.0   3.2e-101  339.2   0.0    1.3  1  DUF1343   Protein of unknown function (DUF1343)


Domain annotation for each model (and alignments):
>> DUF1343  Protein of unknown function (DUF1343)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.2   0.0  1.8e-105  3.2e-101       1     353 []      55     410 ..      55     410 .. 0.95

  Alignments for each domain:
  == domain 1  score: 339.2 bits;  conditional E-value: 1.8e-105
                 EEEEE-TT-EETTTEEHHHHHHHTTT-EEEEEEESTT-TTS-----------B-TTT--BEEE-SGGGSS--HHHHTT-SEEEEE----SBTTSTHHHH CS
     DUF1343   1 vglltnqtgvdsegehlvdvLleakkvklvalfapeHGlrgeadagekvkdsvdpktglpvisLYgkkkkptkemLedlDvlvfdiqDvGvRfYTYist 99 
                 vgl+tnq+gvds+g  +  +L++a++vklv lfapeHG+ g+ +ag +v +++d  tgl+v+sLYg++kkpt++mL++lD lvfd+qD+G+R YT++st
  CCG91810.1  55 VGLITNQSGVDSHGVPTRLILQKAPGVKLVSLFAPEHGIEGKIKAGDEVPSHRDRLTGLKVFSLYGETKKPTQAMLKNLDCLVFDVQDIGCRSYTFVST 153
                 8************************************************************************************************** PP

                 HHHHHHHHHHTT-EEEEE----TTTTS--BS----GGG-BTTB-SSS-SB----HHHHHHHHHHTT-S....EEEEE--BS--TT--HHHH--S-S-SS CS
     DUF1343 100 layvmeaaaengieliVLDRpNplgglkveGpvldkklesfvgalpipvrhGlTiGElAklingekll....dltvipmkgwkrsmlydetglpwvkPS 194
                 +  +mea+ e+gi+++VLDRpNplggl+veGp+++++++sfv+  p+p++hG+T+GE+A+++ng++++    +l vipmkgw+rsm +++tgl w+++S
  CCG91810.1 154 MVAAMEACGEAGIPFYVLDRPNPLGGLRVEGPLVNPSWKSFVSFIPVPYVHGMTVGEIAQMANGRGFIshpcRLYVIPMKGWNRSMVWQDTGLRWIPTS 252
                 *****************************************************************999******************************* PP

                 TT--SCCHHHHHHHHHHHHC.TSSB-STTSSSTTSEEEETT-SHHHHHHHHHTT--TTEEEECEEE--SSSTTTTS-EEEEEECES-TTT---TCHHCC CS
     DUF1343 195 PnlptleaallYpglclfEg.tnvseGrGttrpFeviGapwldakklaeelnalklpgvkfrpvsftpteskhkgetceGvqlevtdrekfdpvelgll 292
                 Pn+p+ ++ ++Y  ++l+ +   ++ G Gtt+ F++i+a+ ld+++la+e+n l+lpgv   p s+         + + G++l++  ++  + ++l+++
  CCG91810.1 253 PNIPREDTPVYYVVTGLVGSlSGLELGTGTTEAFRLIAAKGLDGYRLAREINGLNLPGVLAVPRSI---------NGLIGLELQIDPKTPANLTALAVF 342
                 *******************9779************************************9998865.........457799999988999999999999 PP

                 HCHHHHHHHHGG.SHHH......HHHHHHTSTHHHHHHHCCS-CHHCHHHCHCCHHHHHHHHHCC--S CS
     DUF1343 293 llkallelypeq.felk......afdkllgteelreqieagksveeiraswqkelekFkkkrkkyllY 353
                 l + ++++ + + f+ +       f k+ g+  ++++++  ks ++i+++w+ +l++F  +r++yllY
  CCG91810.1 343 LASRINNMAHPSpFQRSsvahknLFFKVYGSPLILTELNTYKSLQSIARKWAYDLNAFLLARNSYLLY 410
                 99999998763334333666778999*****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3101.25
//
Query:       CCG91811.1  [L=297]
Description: CHAD domain containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-24   85.8   1.0    6.7e-24   85.1   1.0    1.3  1  CHAD          CHAD domain
  ------ inclusion threshold ------
      0.092   12.8   3.0       0.15   12.1   0.6    2.6  2  RsbU_N        Phosphoserine phosphatase RsbU, N-terminal doma
       0.22   11.6   4.7       0.11   12.5   1.6    2.1  2  P4Ha_N        Prolyl 4-Hydroxylase alpha-subunit, N-terminal 


Domain annotation for each model (and alignments):
>> CHAD  CHAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   1.0   1.1e-27   6.7e-24      22     226 ..      34     244 ..       8     245 .. 0.77

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 1.1e-27
                 T.HHHHHHHHHHHHHHHHHHHTTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH.HTS-TTTCGGGHHHHHHHHHHHHHHHHHHH.HHHTS CS
        CHAD  22 p.eavHqmRvalRRlRsalrlfapvldkeeaaalekelrwlaraLGeaRDldVllerllsrleerlpaaeqealerllkrlekerkrararvl.aaLds 118
                 + e++H++Rv  ++lR+++  f+p+ld    ++ + +++  + +LG  RD +V ++ l++  +   +    ++++r+l++ + e ++ ++  + + +d 
  CCG91811.1  34 FaEQIHDLRVLGKKLRALYYFFKPILDCRLLEKEKHRVKMAMSSLGSIRDSHVSIDILRKIKKDYPQLIIPNKIDRFLEEQSLEWNQSQSFSNgDKMDA 132
                 35***************************************************6644443333223333345677777666666665554433444444 PP

                 HHHHHHHHHHHHHHT--S--......TSBHHHHHHHHHHHHHHHH.HHHH--------THHHHHHHHHHHHHHHHHHHH.GGGS-HHHHHHHHHHHHHH CS
        CHAD 119 aryqalldaldallaaerle......aepaaaalekrlrkayrklekraakaeadesdeealHelRkaaKrlRYaaeaf.aplypaalkallkalkklq 210
                 ++  +l+  ++ ll+a+++       ++  ++ + +rl+k +++++k  +ka  +e++++++H++R + Kr+ Y + +  ++   ++l + lk++k++ 
  CCG91811.1 133 SK--KLVSVMEVLLEAKEKLlsqlskRAIEKKIILERLTKGFKAVKKTMEKA-IEEESADSFHRWRLKTKRFYYLLDLCmRQNNSKGLSKVLKKFKQIE 228
                 44..56666666665444446666668888999************9999999.9*************************5444445************* PP

                 HHHHHHHHHHHHHHHH CS
        CHAD 211 evLGdlqDlvvarell 226
                 ++LG+ +D  v++ +l
  CCG91811.1 229 QLLGQAHDFHVLASFL 244
                 *************998 PP

>> RsbU_N  Phosphoserine phosphatase RsbU, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   2.6e-05      0.15      22      62 ..     151     191 ..     133     192 .. 0.92
   2 ?   -1.0   0.1      0.33     2e+03       7      34 ..     265     292 ..     259     294 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHTT--HHHHHHHHHHHHHHH-TTS-HHHHHHH CS
      RsbU_N  22 aeelsrellekgispeeivelHkevleelskdlpedvqasl 62 
                  ++ls++++ek+i +e +++  k v ++++k ++e+ ++s+
  CCG91811.1 151 LSQLSKRAIEKKIILERLTKGFKAVKKTMEKAIEEESADSF 191
                 479***********************************999 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.33
                 HHHHHHH--HHHHHHHHHHHHHHHHTT- CS
      RsbU_N   7 LkeyletqdeqsLyeaeelsrellekgi 34 
                 L++  +++++++L  a+++  +  ek+i
  CCG91811.1 265 LDTLEKEKEKKALSVAKKVVTADFEKNI 292
                 4444456677779999998877777777 PP

>> P4Ha_N  Prolyl 4-Hydroxylase alpha-subunit, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.75   4.5e+03      18      43 ..       3      28 ..       1      44 [. 0.53
   2 ?   12.5   1.6   1.8e-05      0.11       3     116 ..     138     246 ..     137     249 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.75
      P4Ha_N 18 eLesyieeeekkleklkrfleeleee 43
                +L++ i+++++ l+    + ++l ++
  CCG91811.1  3 KLTRRISKQQESLNLWDTASKDLLKW 28
                55555555555555554444444433 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.8e-05
      P4Ha_N   3 adlekLlklErelveeLesyieeeekkleklkrfleeleeehesakedkeeylsnPlnaFkl.ikRltsdWeeleklleeseseelieqlealkkrkes 100
                 + +e Ll+++++l+++L + + e++  le+l +  +++++ +e+a    ee  ++  +  +l +kR++     l+  +++++s++l + l++ k+ ++ 
  CCG91811.1 138 SVMEVLLEAKEKLLSQLSKRAIEKKIILERLTKGFKAVKKTMEKA---IEEESADSFHRWRLkTKRFYYL---LDLCMRQNNSKGLSKVLKKFKQIEQL 230
                 5699*************************************9663...3444455555555533444443...47777888888866666655555444 PP

      P4Ha_N 101 lPteeDlegaakallr 116
                 l +  D++  a  l +
  CCG91811.1 231 LGQAHDFHVLASFLTQ 246
                 8888888777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1288  (0.0718389); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2113.72
//
Query:       CCG91812.1  [L=55]
Description: 50S ribosomal protein L33 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-18   66.8   1.0    1.9e-18   66.6   1.0    1.0  1  Ribosomal_L33  Ribosomal protein L33


Domain annotation for each model (and alignments):
>> Ribosomal_L33  Ribosomal protein L33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   1.0   1.1e-22   1.9e-18       1      47 []       4      55 .]       4      55 .] 0.91

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 1.1e-22
                   .EEEEEET...........EEEEETT..--S--EEEEEETTTTEEEEEEEE- CS
  Ribosomal_L33  1 ekvtLeCtecks.....rnYtttknkkntperLelkKYcprcrkhtlhkEtK 47
                   e+++LeCte+k      ++Y+ tknkk ++ ++el+KY+p++r+htlh+E+K
     CCG91812.1  4 EQIILECTEAKAegkpaSRYYGTKNKKLQQGKIELRKYNPFLRRHTLHREIK 55
                   68*******9996655533********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 441.03
//
Query:       CCG91813.1  [L=231]
Description: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-54  183.0   0.0    7.6e-54  182.8   0.0    1.0  1  IspD          2-C-methyl-D-erythritol 4-phosphate cytidylyltr
    2.2e-07   31.4   0.0    2.9e-07   31.0   0.0    1.2  1  NTP_transf_3  MobA-like NTP transferase domain
    0.00077   19.4   0.0    0.00095   19.1   0.0    1.2  1  CTP_transf_3  Cytidylyltransferase


Domain annotation for each model (and alignments):
>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.8   0.0   1.3e-57   7.6e-54       3     220 ..       7     226 ..       5     227 .. 0.92

  Alignments for each domain:
  == domain 1  score: 182.8 bits;  conditional E-value: 1.3e-57
                 EEEECTTSSCTT-SSS-GGGSEET.TEEHHHHHHHHHHCTTTEEEEEEEE-GGGHHH....HHHHHGGCCEEEEE--SSHHHHHHHHHHTTSSTTSEEE CS
        IspD   3 vvipAAGsGkRmkaglpKqflelk.gqtllehtvdallaskavdkivvvvseddtee....feqllldksiqlvaGGdeRaesVlnglkalegeakfVL 96 
                  +++AAG+ kRm+ +  K f   + g   le  ++ +l+s+ v++ivvvvs++++e+    +++l  dk+i++ +GG+eR++sV++gl al++  ++V+
  CCG91813.1   7 TILVAAGQSKRMGFD--KIFKPFAnGLCPLEICLHRILNSPLVGQIVVVVSKENFERamekISTLCHDKDIKIAEGGKERQDSVYQGLLALDPLWEYVM 103
                 699*********765..677766516678**********************99876511115567777******************************* PP

                 E--TT-TT--HHHHHHHHHHHHTTCSEEEEEEE-SSEEEEEETTTBEEEEETGTTEEEEEEEEEEEHHHHHHHHHHHHHCT---SSHHHHHHHTT--EE CS
        IspD  97 vHDaARpllkaadiaellaaaeqstqgailalpvkDtikrveadglvaetedRegLwaaqtPqgFrvdlllaahakgeqegaeitDdaslvekiGlsvk 195
                 vHD+ARp++k++ i  + +aa++   +a+   p +Dt+k v+ dg +++t dR+++w++qtPq F+++ll +a+ + +++g  +tDdas+ve+iG++vk
  CCG91813.1 104 VHDSARPFIKEELISVVFQAARE-VGAAVCGKPCSDTLKEVDMDGKILKTLDRSKIWTVQTPQIFKRSLLEKAYMALQNQGDIVTDDASAVERIGGTVK 201
                 ****************9999997.9************************************************************************** PP

                 EEE--TTG----SHHHHHHHHHHHH CS
        IspD 196 vVeGeednlKittpeDlalAeailr 220
                 vV  + +n+K+t +eD  +A+ +l+
  CCG91813.1 202 VVFYKGNNMKMTLQEDWDIANLLLQ 226
                 ********************99986 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   4.9e-11   2.9e-07       2     121 ..       8     133 ..       7     195 .. 0.71

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 4.9e-11
                   EEEEESS-TTTTTTHHHHCC.CCCCHHHHHHHHHCTT..-CEEEEECSHCHHHHHHTTCTS-EEE-....TTSS-SHHHHHHHHHHHH..SSSCEEE CS
  NTP_transf_3   2 viLAGGrSsRmggdKallpl.ggkpllervldalraag.vdevvvvggdeevlaalarlgvrvved....edpgkgplaslaaalraaa.dadavlv 91 
                   ++ A+G+S+Rmg dK + p+ +g   le +l ++  ++ v+++vvv+  e+ ++a+++  + +       ++ gk    s++ +l a+    ++v+v
    CCG91813.1   8 ILVAAGQSKRMGFDKIFKPFaNGLCPLEICLHRILNSPlVGQIVVVVSKENFERAMEKISTLCHDKdikiAEGGKERQDSVYQGLLALDpLWEYVMV 104
                   678*****************99999********9999768*********9888877666544433322213336788899*****997324555555 PP

                   EETT-TT--HHHHHHHHHCHHHHTSSEEEE CS
  NTP_transf_3  92 lacDmPlltpelverllaaaaasgadvvvp 121
                        P++++el+  +++aa++ ga+v + 
    CCG91813.1 105 HDSARPFIKEELISVVFQAAREVGAAV-CG 133
                   55558**************98666554.43 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.6e-07   0.00095       9     200 ..      14     221 ..       7     230 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.6e-07
                   SSSSST.TGGGSEET.TEEHHHHHHHHHHHTTTTSEEEEEES-HHHHHHHHHTTSEEEE--TTCSSHHHHHHHHHHHHTTT.TTS..EEEEE-TT-T CS
  CTP_transf_3   9 gSkRlp.gKnlldlg.gkpliayvleaalkskafekvivaTDseeiknvakefgasvlvtrsslesdterflevvkaflmsenee..iivnlqGdnP 101
                   +SkR+  +K  ++++ g + ++++l+++l+s+++ +++v  ++e+ + +++++   ++  + ++ ++ +   + v + l   + +  +++   ++ P
    CCG91813.1  14 QSKRMGfDKIFKPFAnGLCPLEICLHRILNSPLVGQIVVVVSKENFERAMEKISTLCHDKDIKIAEGGKERQDSVYQGLLALDPLweYVMVHDSARP 110
                   566663367777775257889*********************************999999999988866666666555555444466999999**** PP

                   T--HHHHHHHHHHHHHSTTS.......SEEEEEEETTSHHHHTSTTSTEEEETTT.........SBEEEEESSESSEEHHHHHCTSTTTSEEEEEEE CS
  CTP_transf_3 102 llqeevikkaietlkenqed.......ylstlvkkvgkeeevlnandlkvlldda.........gkalyfeesvipyireeplelsrrlylshagiy 182
                   +++ee+i+ ++++ +e +         ++ + v++ gk  + l+ +++ ++   +         ++ +++ + +i  +   + e     + +++++ 
    CCG91813.1 111 FIKEELISVVFQAAREVGAAvcgkpcsDTLKEVDMDGKILKTLDRSKIWTVQTPQifkrsllekAYMALQNQGDIVTDDASAVE----RIGGTVKVV 203
                   ****************99888888655333333333333333333333333333344444444455555555555555555555....355666666 PP

                   EEEHHHHHHHHHHSHHHH CS
  CTP_transf_3 183 tfrkeqplkelvidtpts 200
                    ++ +++ + l  d++++
    CCG91813.1 204 FYKGNNMKMTLQEDWDIA 221
                   666556666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1686.57
//
Query:       CCG91814.1  [L=271]
Description: Organic solvents resistance ABC-type transport system, periplasmic component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-15   55.4   0.2    1.2e-14   54.3   0.1    1.7  2  MlaD      MlaD protein
     0.0027   17.9   0.3        0.2   11.9   0.1    2.3  2  DUF948    Bacterial protein of unknown function (DUF948)


Domain annotation for each model (and alignments):
>> MlaD  MlaD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.1   1.4e-18   1.2e-14       2      80 ..      38     115 ..      37     116 .. 0.94
   2 ?   -3.4   0.0       1.4   1.3e+04      58      70 ..     175     187 ..     159     191 .. 0.69

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1.4e-18
        MlaD   2 gytvtaqfdnangLkvgapVryrGvtvGrVtsi.tldpdtrrvtvtvdldkksetsipedsraqvstggllgekyialdp 80 
                 +y+vt++f+na gL +gapV ++G +vGrV s  +   ++r v+v+++++   + +i++d+  q+   g+lg+k ia++p
  CCG91814.1  38 SYQVTVEFPNAYGLIKGAPVYFAGAPVGRVISTpRQIREGRAVEVDIKIN--ADAKIRKDALFQIVDVGMLGDKAIAITP 115
                 79*******************************4445599999*******..**************************98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.4
        MlaD  58 pedsraqvstggl 70 
                  +d+ra+++   l
  CCG91814.1 175 ASDLRATIKELRL 187
                 4567787776655 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   2.2e-05       0.2      19      67 ..     121     169 ..     116     171 .. 0.85
   2 !    4.3   0.1    0.0055        50      36      65 ..     172     201 ..     168     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.2e-05
      DUF948  19 vvllklkktldeaaatieelekqvdpilkevedllakvnelledvnekl 67 
                 ++l++  k+    a+t+ ++++q++p+++ +++ll+ + ++++ +n+ +
  CCG91814.1 121 PFLRNGDKVRGTRASTLSDVTSQITPLINSATQLLEGAGTIVNRINQNV 169
                 5666666777777899*****************************9875 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0055
      DUF948  36 eelekqvdpilkevedllakvnelledvne 65 
                 ee+ +++++++ke++ +l+ + +ll+d + 
  CCG91814.1 172 EETASDLRATIKELRLVLSRTDQLLADAQY 201
                 677899999****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2055.80
//
Query:       CCG91815.1  [L=248]
Description: toluene tolerance efflux transporter (ABC superfamily, atp_bind) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-32  113.0   0.0    1.9e-32  112.6   0.0    1.1  1  ABC_tran      ABC transporter
    7.9e-08   32.5   0.2     0.0022   17.9   0.0    2.3  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00055   19.4   0.1      0.001   18.5   0.1    1.4  1  SMC_N         RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.032   14.0   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
      0.064   13.0   0.2       0.14   12.0   0.2    1.6  1  RPAP1_N       RPAP1-like, N-terminal
      0.071   12.3   0.2      0.093   11.9   0.2    1.2  1  Bac_export_2  FlhB HrpN YscU SpaS Family
      0.089   12.5   0.0        0.2   11.4   0.0    1.5  1  XylR_N        Activator of aromatic catabolism
       0.11   12.6   0.5       0.26   11.4   0.2    1.7  2  DUF5415       Family of unknown function (DUF5415)
       0.14   11.9   0.0        2.8    7.6   0.0    2.1  2  AAA_15        AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   0.0   9.6e-36   1.9e-32       1     137 []      17     166 ..      17     166 .. 0.96

  Alignments for each domain:
  == domain 1  score: 112.6 bits;  conditional E-value: 9.6e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren..............esd 82 
                 l+ v++++ eg +  i+G++G GKS Ll++++gl kp++Ge++++g+++ +   ++l  lr+ +g+++q+  lf+ +tv+en              e +
  CCG91815.1  17 LDGVNFEILEGDRFMIIGRSGGGKSVLLRIILGLIKPDSGEVWYKGQNIVMlseRKLAPLRRDMGMVFQNGALFDFMTVEENvafalrekggmsekEIK 115
                 789**********************************************999999999**********************************9998888 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +e++++l++l lk+ +++      s+LSgG+++rva+ara++ kpk++++DEpta
  CCG91815.1 116 KEVSELLERLLLKGQEKKMP----SELSGGMRKRVAVARAVIAKPKIIFFDEPTA 166
                 99***********9777776....*****************************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.2   5.3e-05       0.1       3      35 ..      31      57 ..      30      80 .. 0.77
   2 !   17.9   0.0   1.1e-06    0.0022     235     299 ..     136     198 ..      90     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.3e-05
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrdvegltde 35
                ++iG+ g GKS LL+++ +l      ++++  e
  CCG91815.1 31 MIIGRSGGGKSVLLRIILGL------IKPDSGE 57
                69***************887......3444444 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.1e-06
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSp 299
                 +elS G+++  a++ a+++ +   +++++DEp +gL+P + ++l  l+ +l++  ++  +++TH+ 
  CCG91815.1 136 SELSGGMRKRVAVARAVIAKP---KIIFFDEPTAGLDPIASSELNALICSLNKeFNVTTVIVTHDM 198
                 578999999988888888766...9*************888998888855555589********96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   5.2e-07     0.001      28     204 ..      31     203 ..      20     216 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5.2e-07
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsel 126
                 +i+G+ G GKs ll  il ++  +s  ++   k ++++  s++k +  + ++ ++f+n      ++ ee +     +++g se +i+++  +  e   l
  CCG91815.1  31 MIIGRSGGGKSVLLRIILGLIKPDSG-EVWY-KGQNIVMLSERKLAPLRRDMGMVFQNGALFDFMTVEENVAFALREKGGMSEKEIKKEVSELLERLLL 127
                 799********999999555544444.5554.45556665689999999999****9999987888888888888888899999998888777666666 PP

                 HHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE..EEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx RF
       SMC_N 127 lesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf..ivislreemlek 204
                   +++  +++LSgG ++ va+a    +  +kp+ + ++De  a LD    +++  l+ + +k++ +  ++++++ e +++
  CCG91815.1 128 KGQEKKMPSELSGGMRKRVAVARA--V-IAKPK-IIFFDEPTAGLDPIASSELNALICSLNKEFNVttVIVTHDMEAVRQ 203
                 6666777889*******9998854..2.23444.6779********************9999866511566666555554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.6e-05     0.032      13      42 ..      18      47 ..      10      60 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.6e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDAi 42
                dg  +ei + + ++++G+sG GKS ll  i
  CCG91815.1 18 DGVNFEILEGDRFMIIGRSGGGKSVLLRII 47
                566777865559*************99555 PP

>> RPAP1_N  RPAP1-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2     7e-05      0.14      14      30 ..     109     125 ..     107     126 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7e-05
     RPAP1_N  14 MspeEIeeereeLlesL 30 
                 Ms+ EI++e  eLle+L
  CCG91815.1 109 MSEKEIKKEVSELLERL 125
                 ***************98 PP

>> Bac_export_2  FlhB HrpN YscU SpaS Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   4.7e-05     0.093     186     254 ..      86     157 ..      59     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.7e-05
                   XXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHT-SEEEEETT CS
  Bac_export_2 186 viallDlllqr....wefekklkMtkqEvKdEyKesEGdpeiKsrirqlqrelarrrmmaevpkAdvvitNPt 254
                     al+D++       +  ++k  M+++E+K+E+ e      +K++ +++  el +  m++ v+ A  vi+ P 
    CCG91815.1  86 NGALFDFMTVEenvaFALREKGGMSEKEIKKEVSELLERLLLKGQEKKMPSEL-SGGMRKRVAVARAVIAKPK 157
                   55666666654111134455566*****************************9.8**************9996 PP

>> XylR_N  Activator of aromatic catabolism
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0001       0.2       8      37 ..      51      80 ..      47      86 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
      XylR_N  8 fspeeGkiwlkeqRmlLlhaealgalrkel 37
                ++p++G++w+k+q +++l+++ l+ lr+++
  CCG91815.1 51 IKPDSGEVWYKGQNIVMLSERKLAPLRRDM 80
                689*************************97 PP

>> DUF5415  Family of unknown function (DUF5415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.7   5.3e+03      30      41 ..      16      27 ..      11      29 .. 0.85
   2 ?   11.4   0.2   0.00013      0.26       9      46 ..      97     134 ..      92     146 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.7
     DUF5415 30 vlekvqfdllrG 41
                vl+ v+f++l G
  CCG91815.1 16 VLDGVNFEILEG 27
                899999999988 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00013
     DUF5415   9 ekaaskilerrGvseaqwkkevlekvqfdllrGkdkdl 46 
                 e  a  + e+ G+se   kkev e     ll+G++k +
  CCG91815.1  97 ENVAFALREKGGMSEKEIKKEVSELLERLLLKGQEKKM 134
                 5667778899************************9976 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.051     1e+02      27      50 ..      31      54 ..      21     139 .. 0.69
   2 ?    7.6   0.0    0.0014       2.8     322     365 ..     154     197 ..     141     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.051
      AAA_15 27 vliGkNnsGKSsilealdlFlnnk 50
                 +iG+ + GKS +l+++  +++ +
  CCG91815.1 31 MIIGRSGGGKSVLLRIILGLIKPD 54
                69**************98888866 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0014
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                 +k++i++++EP a L p a ++l  l+++l ++ +  ++i TH 
  CCG91815.1 154 AKPKIIFFDEPTAGLDPIASSELNALICSLNKEFNVTTVIVTHD 197
                 6899******************************9999****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 1883.74
//
Query:       CCG91816.1  [L=258]
Description: Organic solvents resistance ABC-type transport system permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-72  241.9  18.8    6.3e-72  241.7  18.8    1.0  1  MlaE      Permease MlaE
  ------ inclusion threshold ------
      0.042   13.6   0.1       0.15   11.7   0.0    1.8  2  UPF0175   Uncharacterised protein family (UPF0175)


Domain annotation for each model (and alignments):
>> MlaE  Permease MlaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.7  18.8   7.1e-76   6.3e-72       1     211 [.      40     250 ..      40     251 .. 0.99

  Alignments for each domain:
  == domain 1  score: 241.7 bits;  conditional E-value: 7.1e-76
        MlaE   1 lveqlefvgvkslpivlltalftGavlalqgasqlkqfgaesllgslvalalvrelgPvltallvagrvGsaiaAelGtmrvteeidAlevmgidpiky 99 
                 ++ q+ ++g+ks +ivl+t++ftGav+a q+   + ++g++s++g +v+la++relgPvl+al+v+grvGsa+aAe+ tmrvte+idAl+++g+   +y
  CCG91816.1  40 FLMQILSIGAKSQIIVLITGAFTGAVFAAQVQFHFGKLGMSSATGPVVTLAMLRELGPVLCALMVSGRVGSAMAAEISTMRVTEQIDALRALGVYVTQY 138
                 5789*********************************************************************************************** PP

        MlaE 100 lvvPrvlAlvialplLtviadlvgilggylvavlllgispgaylqsvqealslkdllvgllKalvfGliialiacyqGltakggaegvgrattravvts 198
                 lvvPr+l+lv+++plL++i++ +gil gylv+v llg++p++y++++ +++sl d+++g lK ++fG +i+li+cy+Gl+++ +aegvg a+t+a+v+s
  CCG91816.1 139 LVVPRFLGLVVSMPLLVAITSGIGILCGYLVSVPLLGVEPAYYWENTIRFTSLDDVWMGELKGMFFGGLIVLISCYRGLNCQLSAEGVGIAATQAMVYS 237
                 *************************************************************************************************** PP

        MlaE 199 ivlilvvdlvltl 211
                 ++ il++++++++
  CCG91816.1 238 SISILISNFFFSF 250
                 **********987 PP

>> UPF0175  Uncharacterised protein family (UPF0175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.27   2.4e+03      27      42 ..      38      53 ..      37      61 .. 0.87
   2 ?   11.7   0.0   1.7e-05      0.15      30      64 ..     104     138 ..      97     140 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.27
     UPF0175 27 klYeegrlSlgkAael 42
                kl+ +++lS+g  +++
  CCG91816.1 38 KLFLMQILSIGAKSQI 53
                79999*****988877 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 1.7e-05
     UPF0175  30 eegrlSlgkAaelaglsrveflelLarrgipliny 64 
                   gr+ +++Aae+  +   e ++ L+  g+++ +y
  CCG91816.1 104 VSGRVGSAMAAEISTMRVTEQIDALRALGVYVTQY 138
                 679****************************9888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1659.03
//
Query:       CCG91817.1  [L=54]
Description: hypothetical protein MFUM_220018 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.46
# Mc/sec: 354.78
//
Query:       CCG91818.1  [L=121]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00021   21.4   0.2    0.00043   20.3   0.0    1.5  1  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
    0.00081   19.7   0.1     0.0014   18.9   0.1    1.4  1  HalX            HalX domain
    0.00082   19.4   7.0       0.01   15.9   2.2    3.0  3  TolA_bind_tri   TolA binding protein trimerisation
     0.0011   17.9   0.2     0.0013   17.7   0.2    1.1  1  Spc7            Spc7 kinetochore protein
     0.0014   18.6   0.1        0.6   10.1   0.0    2.0  2  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
     0.0022   15.6   0.1     0.0022   15.6   0.1    1.0  1  DUF3584         Protein of unknown function (DUF3584)
     0.0023   17.8   1.6     0.0026   17.6   1.6    1.1  1  KASH_CCD        Coiled-coil region of CCDC155 or KASH
     0.0034   17.5   4.4     0.0052   16.8   4.4    1.3  1  DUF1640         Protein of unknown function (DUF1640)
     0.0037   17.3   2.0       0.04   14.0   0.3    2.5  2  bZIP_1          bZIP transcription factor
     0.0038   17.1   3.1      0.011   15.6   3.1    1.8  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
     0.0048   15.5   0.4     0.0053   15.4   0.4    1.0  1  Macoilin        Macoilin family
     0.0051   16.3   1.1     0.0061   16.1   1.1    1.1  1  Golgin_A5       Golgin subfamily A member 5
     0.0077   16.4   0.4        0.3   11.3   0.0    2.9  2  HALZ            Homeobox associated leucine zipper
     0.0079   16.2   0.6        1.3    9.0   0.2    2.1  2  DUF1664         Protein of unknown function (DUF1664)
     0.0083   16.4   0.8      0.017   15.4   0.5    1.7  1  KxDL            Uncharacterized conserved protein
     0.0083   16.3   6.8      0.014   15.6   6.8    1.4  1  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
     0.0085   16.3   0.0       0.29   11.4   0.0    2.0  2  DUF948          Bacterial protein of unknown function (DUF948
     0.0091   16.2   0.7        3.2    7.8   0.0    2.2  2  DUF2959         Protein of unknown function (DUF2959)
     0.0092   16.2   0.5       0.34   11.2   0.7    2.2  2  ABC_tran_CTD    ABC transporter C-terminal domain
     0.0094   16.2   0.6      0.068   13.5   0.6    2.0  1  BLOC1_2         Biogenesis of lysosome-related organelles com
     0.0097   15.6   0.2      0.012   15.4   0.2    1.1  1  SHE3            SWI5-dependent HO expression protein 3
  ------ inclusion threshold ------
       0.01   15.8   0.1        1.2    9.1   0.0    2.4  2  Prefoldin_2     Prefoldin subunit
       0.01   15.4   2.4      0.024   14.2   2.4    1.6  1  DUF4795         Domain of unknown function (DUF4795)
      0.011   15.5   2.7       0.27   11.1   1.7    2.5  2  HSBP1           Heat shock factor binding protein 1
      0.019   15.3   1.0      0.019   15.3   1.0    2.2  3  CLZ             C-terminal leucine zipper domain of cyclic nu
      0.022   14.7   1.8       0.27   11.2   0.2    2.2  2  LURAP           Leucine rich adaptor protein
      0.027   14.5   0.4       0.07   13.1   0.3    1.7  1  Phasin          Poly(hydroxyalcanoate) granule associated pro
      0.028   14.8   4.6       0.47   10.9   0.5    3.1  2  FlaC_arch       Flagella accessory protein C (FlaC)
      0.029   14.4   1.4      0.038   14.0   1.4    1.2  1  SYCE1           Synaptonemal complex central element protein 
      0.033   14.7   0.2      0.049   14.2   0.2    1.4  1  Syntaxin-6_N    Syntaxin 6, N-terminal
      0.039   14.4   1.8      0.046   14.2   1.8    1.1  1  Fez1            Fez1
      0.044   13.8   3.7      0.087   12.8   3.7    1.6  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.046   13.1   0.1      0.056   12.8   0.1    1.1  1  FAM76           FAM76 protein
       0.05   13.1   0.4      0.055   12.9   0.4    1.1  1  MIF4G_like_2    MIF4G like
      0.061   13.4   1.8        0.8    9.8   0.0    2.8  1  DUF2730         Protein of unknown function (DUF2730)
      0.075   13.3   0.3        6.7    7.1   0.2    2.2  2  DUF2173         Uncharacterized conserved protein (DUF2173)
      0.086   13.3   0.2        1.5    9.4   0.0    2.7  2  COMP            Cartilage oligomeric matrix protein
      0.089   13.4   0.6       0.15   12.7   0.5    1.6  1  DUF883          Bacterial protein of unknown function (DUF883
       0.11   12.8   0.1       0.13   12.7   0.1    1.2  1  DUF1178         Protein of unknown function (DUF1178)
       0.15   12.6   0.0       0.68   10.4   0.0    2.1  1  NPV_P10         Nucleopolyhedrovirus P10 protein
       0.17   12.2   1.9        4.1    7.8   0.1    2.4  2  TSC22           TSC-22/dip/bun family
       0.18   10.1   0.8        2.2    6.6   0.2    1.8  2  Hemagglutinin   Haemagglutinin
       0.19   12.4   2.3       0.46   11.1   1.7    1.8  2  YabA            Initiation control protein YabA
       0.21   10.5   1.0       0.21   10.5   0.1    1.6  2  Stn1            Telomere regulation protein Stn1
       0.32   11.4   1.1        3.8    7.9   0.1    2.4  2  DUF4156         Domain of unknown function (DUF4156)


Domain annotation for each model (and alignments):
>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.1e-06   0.00043      61     117 ..      23      79 ..      21      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.1e-06
  TPR_MLP1_2  61 alreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlne 117
                 +lr e+n+l+ e+++l+ e +s++ e++  + ++++ + e+  + + +ekr++dl +
  CCG91818.1  23 SLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLEMNARFEAMEKRLDDLRS 79 
                 689999999999999999999999999999999999999999999999999999976 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   3.5e-06    0.0014       1      55 [.      31      85 ..      31      96 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.5e-06
        HalX  1 trseYdeelqelfaLasKravLeaekseaeLadseeYqeLearleelraqldetl 55
                +r+e ++   e  +L+  +  L+ e+ +  L+ + +++++e rl++lr++     
  CCG91818.1 31 LRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLEMNARFEAMEKRLDDLRSEMNSRF 85
                5999999******************************************987655 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.2   2.6e-05      0.01      23      70 ..      24      71 ..      20      71 .. 0.87
   2 !   14.5   2.7     7e-05     0.028      23      69 ..      38      88 ..      34      95 .. 0.64
   3 ?   -1.1   0.0       5.1     2e+03       4      16 ..      97     109 ..      95     117 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.6e-05
  TolA_bind_tri 23 lqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrkle 70
                   l  ++++l+ e+++LRG++  l+ ++++l+   + l l++++r +++e
     CCG91818.1 24 LRGEMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLEMNARFEAME 71
                   667899999999999999999999999999999999999999988765 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 7e-05
  TolA_bind_tri 23 lqqqlealqqelreLRGqiEelqyql....eqleerQrdlYldlDerlrkl 69
                   l  ++++l+ e+++LRG++  l+ ++    e +e+r  dl  ++++r +++
     CCG91818.1 38 LRGEMNSLRGEMNSLRGEMNSLRLEMnarfEAMEKRLDDLRSEMNSRFEAV 88
                   555677778888888888876655552222567777777777777777665 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 5.1
  TolA_bind_tri   4 drvarLErilear 16 
                    +r++ +E+il++ 
     CCG91818.1  97 KRIELIEKILAKA 109
                    6999999999884 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   3.3e-06    0.0013     170     270 ..      22     119 ..       9     121 .] 0.77

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.3e-06
        Spc7 170 peleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelae.lqeqleeleekieelkeqkseleeeiaeaervleeckgwsese 267
                 ++l+ e ++l+ e+++l+ + +    + + e+++lr e+++l  e++++ + +++ l + + e ++++e+++++ +e  ++i+  e++l +  + + +e
  CCG91818.1  22 NSLRGEMNSLRGEMNSLRGEMN----SLRGEMNSLRGEMNSLRLEMNARFEAMEKrLDDLRSEMNSRFEAVNARFAEQGKRIELIEKILAKAVRLDVEE 116
                 5677777788888888877443....4578999999999999999987665555515555678899999999999999999999999999888888877 PP

        Spc7 268 vsr 270
                 +++
  CCG91818.1 117 LKK 119
                 776 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0052       2.1      60      97 ..      19      59 ..       2      64 .. 0.46
   2 !   10.1   0.0    0.0015       0.6      24      89 ..      51     116 ..      47     120 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0052
  Baculo_PEP_C 60 eldtrldtlltnLtdalnalq...dtlrneLtnlnsiltnL 97
                   +++ l   ++ L   +n+l    ++lr e+++l  ++++L
    CCG91818.1 19 WFQNSLRGEMNSLRGEMNSLRgemNSLRGEMNSLRGEMNSL 59
                  23444444444444444444444444444444444444444 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0015
  Baculo_PEP_C  24 airlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtn 89 
                   ++r    ++  ++++ ++a+e++L++l ++++s  +++++r++++ ++++   + l++++r + + 
    CCG91818.1  51 SLRGEMNSLRLEMNARFEAMEKRLDDLRSEMNSRFEAVNARFAEQGKRIELIEKILAKAVRLDVEE 116
                   555555555667788889999999999999999999999999999999888888787777776665 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   5.5e-06    0.0022     256     347 ..      27     118 ..       4     121 .] 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.5e-06
     DUF3584 256 qleslelrLsllkgelkadeerlaekqeevqeakaelkqqlrtledelkeaidelnqelsaakaklaakeselealeeqkkkyedadieklk 347
                 +++sl  ++ +l ge+ +   ++++ + e++    e++++++++e+ l + ++e+n++ +a +a  a++ +++e++e+   k    d+e+lk
  CCG91818.1  27 EMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLEMNARFEAMEKRLDDLRSEMNSRFEAVNARFAEQGKRIELIEKILAKAVRLDVEELK 118
                 57788888889999999999999999999999999999999999999999999999999999999999999999999877776666666665 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.6   6.6e-06    0.0026      19     113 ..      23     119 ..      11     121 .] 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6.6e-06
    KASH_CCD  19 kLaeenskLkkavetaeetnakLteeieeLkkklkstQqa.lqkaklleeEleelkalvke.leEkrarlkaqnkqlekenqsLiakiesLqeenik 113
                 +L +e ++L+  +++   + + L  e++ L++ + s+      +++++e+ l++l+  +++  e  +ar + q k++e  ++ L + +    ee++k
  CCG91818.1  23 SLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLEmNARFEAMEKRLDDLRSEMNSrFEAVNARFAEQGKRIELIEKILAKAVRLDVEELKK 119
                 7999***********9999999**************9855156899**********9887615678999********99988888877655555554 PP

>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   4.4   1.3e-05    0.0052      58     134 ..      27     105 ..      20     120 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-05
     DUF1640  58 alselrkevqisersefaalrseteklqreleklkqkLree...idklkadirldlnleKgrireelakleakiqelnnk 134
                 ++ +lr e+ ++ r e+++lr e ++l+ e++ l+ +++     ++k  +d r ++n++ + + + +a++ ++i+ +++ 
  CCG91818.1  27 EMNSLRGEMNSL-RGEMNSLRGEMNSLRGEMNSLRLEMNARfeaMEKRLDDLRSEMNSRFEAVNARFAEQGKRIELIEKI 105
                 456677777665.5688999999999999999999999965111455556788888888888888888888888666543 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.3    0.0001      0.04      27      62 ..      27      62 ..      21      64 .. 0.72
   2 ?    2.7   0.2      0.35   1.4e+02      33      50 ..      65      82 ..      59      91 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 0.0001
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 27 eieeLerrvkaLekeNksLkseleelkkevekLksk 62
                e++ L  ++  L +e+ sL+ e+++l+ e+++L+ +
  CCG91818.1 27 EMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLE 62
                566777777777777777777777777777777765 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.35
                HHHHHHHHHHHHHHHHHH CS
      bZIP_1 33 rrvkaLekeNksLksele 50
                 r++a+ek   +L+se++
  CCG91818.1 65 ARFEAMEKRLDDLRSEMN 82
                455555555555555554 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   3.1   2.9e-05     0.011      27      95 ..      41     119 ..      16     121 .] 0.72

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.9e-05
                     HHHHHHHHHHHHHHHH...HHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHH.......HHHHCHHCCHH CS
  Apolipoprotein  27 lrdrlskeleelrarl...raeleevrarlepyrdevqeqlgqnleelrqrlapyteelre.......rlaadaeelqe 95 
                     + + l  e ++lr ++   r e+++  +++e ++d+++ +++++ e++++r a+  +++          +++d+eel++
      CCG91818.1  41 EMNSLRGEMNSLRGEMnslRLEMNARFEAMEKRLDDLRSEMNSRFEAVNARFAEQGKRIELiekilakAVRLDVEELKK 119
                     4455555666666666666888999999999999999999999999999999999888744666666688888998887 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   1.3e-05    0.0053     419     508 ..      21     111 ..       6     120 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
    Macoilin 419 eqelrskissltseerslkselqqlkkendllqtklhelvsakqkdkqtlqqlekrL...keekeara.slekqLaeekkrkkeeeetaarava 508
                 ++ lr +++sl +e  sl+ e+++l+ e ++l+  +++l   + +    ++ +ekrL   ++e ++r  ++++++ae+ kr    e+  a+av 
  CCG91818.1  21 QNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSL---RLEMNARFEAMEKRLddlRSEMNSRFeAVNARFAEQGKRIELIEKILAKAVR 111
                 578999999999999999999999999999999888776...4555667788888862226788999625788899998988888888888775 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.1   1.5e-05    0.0061      46     118 ..      25      94 ..      16     120 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.5e-05
   Golgin_A5  46 saeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaeler 118
                   e+++l+ e + lr e+++l++++++lr e++ l  +++a +e ++++l +l++++++  +   +v+a  ++
  CCG91818.1  25 RGEMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLEMNARFEAMEKRLDDLRSEMNSRFE---AVNARFAE 94 
                 45677777777777778888888888888887777777777777777777777777664333...33333333 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00075       0.3      10      42 ..      24      56 ..      22      64 .. 0.64
   2 ?    2.1   0.1      0.58   2.3e+02      18      36 ..      64      82 ..      62      83 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00075
        HALZ 10 LKasYdaLksdydsLkkenekLkaelqeLkekl 42
                L+   ++L+ + +sL+ e ++L+ e+++L++ +
  CCG91818.1 24 LRGEMNSLRGEMNSLRGEMNSLRGEMNSLRGEM 56
                555556666666666666666666666666554 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.58
        HALZ 18 ksdydsLkkenekLkaelq 36
                 +++++++k  + L++e++
  CCG91818.1 64 NARFEAMEKRLDDLRSEMN 82
                5677777777777777765 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.012       4.6      75     120 ..      14      59 ..       2      63 .. 0.78
   2 !    9.0   0.2    0.0034       1.3      39     100 ..      56     118 ..      53     121 .] 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.012
     DUF1664  75 ldeqkeiskeikeevtevredlseigedvesvkeavegleskleri 120
                 + ++   +++++ e++++r+++++++ +++s++  +++l ++++++
  CCG91818.1  14 IGAVVWFQNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSL 59 
                 5556667888889999999999999999999999999999888876 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0034
     DUF1664  39 lsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevte.vredlseig 100
                 +++   ++  + e + + l + + +++sr + v+++  eq + ++ i++ +++ vr d++e++
  CCG91818.1  56 MNSLRLEMNARFEAMEKRLDDLRSEMNSRFEAVNARFAEQGKRIELIEKILAKaVRLDVEELK 118
                 566666788888999999999999999999999999999999999998877642667777766 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.5   4.3e-05     0.017      20      64 ..      62     106 ..      54     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.3e-05
        KxDL  20 qtsgrlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdL 64 
                 ++ +r+++ +++L +l+ ++++r++ ++arf+++ k +  + k L
  CCG91818.1  62 EMNARFEAMEKRLDDLRSEMNSRFEAVNARFAEQGKRIELIEKIL 106
                 6889****************************9988877766655 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   6.8   3.6e-05     0.014      15     105 ..      22     118 ..      15     120 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.6e-05
  TMF_TATA_bd  15 erlsseirrlEgElaslkeelerleaerdeareeivklm.keneelkelkkeleelekeleelqeryetlLellGeksEeveEL.....raDvaDlK 105
                  ++l  e  +l gE++sl+ e+++l  e +++r e+ +l  + n + ++++k+l++l++e+++  e  ++     G++ E +e       r Dv++lK
   CCG91818.1  22 NSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRlEMNARFEAMEKRLDDLRSEMNSRFEAVNARFAEQGKRIELIEKIlakavRLDVEELK 118
                  567778889999***********************9996488999999*********9999877777777777777777766532222266777776 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00073      0.29       9      68 ..       8      68 ..       4      71 .. 0.78
   2 ?    5.1   0.0     0.067        27      30      74 ..      62     106 ..      59     114 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00073
      DUF948  9 AFvvLviflivvl.lklkktldeaaatieelekqvdpilkevedllakvnelledvnekle 68
                +++v vi  +v + ++l+  +++++  +++l+ +++++  e++ l  ++n l  ++n + e
  CCG91818.1  8 TVIVTVIGAVVWFqNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLEMNARFE 68
                55566665555441567999*************************9999999888887665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.067
      DUF948  30 eaaatieelekqvdpilkevedllakvnelledvneklekvdplt 74 
                 e++a+ e +ek++d +  e++   + vn+  ++  +++e ++++ 
  CCG91818.1  62 EMNARFEAMEKRLDDLRSEMNSRFEAVNARFAEQGKRIELIEKIL 106
                 678889999999999999999999999986665555555555554 PP

>> DUF2959  Protein of unknown function (DUF2959)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0081       3.2     155     178 ..      35      58 ..       8      72 .. 0.52
   2 !    7.6   0.3    0.0094       3.7      45      84 ..      67     106 ..      60     120 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0081
     DUF2959 155 iaalkgelselekdvsklikemek 178
                 +++l+ge+++l+ ++++l  em++
  CCG91818.1  35 MNSLRGEMNSLRGEMNSLRGEMNS 58 
                 233333333333333333333332 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0094
     DUF2959  45 vefdggeLekeyeklnkeyeesekaaeevrerieaveeva 84 
                 +e+ +  L++ ++++n+++e+ +++ +e  +rie +e++ 
  CCG91818.1  67 FEAMEKRLDDLRSEMNSRFEAVNARFAEQGKRIELIEKIL 106
                 556678899999************************9973 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.29   1.2e+02      15      33 ..      33      51 ..      21      64 .. 0.47
   2 !   11.2   0.7   0.00084      0.34      13      60 ..      63     109 ..      55     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.29
  ABC_tran_CTD 15 aeIeaLEeeiaeleaelad 33
                   e+++L  e+ +l  e+++
    CCG91818.1 33 GEMNSLRGEMNSLRGEMNS 51
                  3333333333333333332 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00084
  ABC_tran_CTD  13 leaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeel 60 
                   + a+ ea+E+++ +l  e+++  + +  +++ae  +++e +e+ L+++
    CCG91818.1  63 MNARFEAMEKRLDDLRSEMNSR-FEAVNARFAEQGKRIELIEKILAKA 109
                   77899***************76.5566699*********999988876 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.6   0.00017     0.068      11      73 ..      38     105 ..      21     113 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00017
     BLOC1_2  11 leaeleatvedyklLe.klNe...aasekykklkdvaaslekklek.lnekyeelqpylqqidqiekq 73 
                 l++e+++ + +++ L  ++N    +++++++++++++++l+++++   ++ ++ ++++ ++i+ iek 
  CCG91818.1  38 LRGEMNSLRGEMNSLRgEMNSlrlEMNARFEAMEKRLDDLRSEMNSrFEAVNARFAEQGKRIELIEKI 105
                 66777777777776643566422278899999999999999999861466666999999999999875 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2     3e-05     0.012      90     178 ..      22     109 ..      16     121 .] 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3e-05
                 HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSXXXXXXXXXXX.XXXXXXXXXXXXX CS
        SHE3  90 kqlkkrlenssaseteleeelerlkvqYdalvdsqkeYkehYqqeieeLkesleklklenekqleelqerissndkdidtkldsynnkk 178
                 + l+ +++++  + ++l+ e++ l+ + ++l    +  +   +   e ++++l++l+ e + ++e  ++r  ++ k i+  +++   k 
  CCG91818.1  22 NSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLEMNARFEAMEKRLDDLRSEMNSRFEAVNARFAEQGKRIEL-IEKILAKA 109
                 67788888888889999999999999999999999999999999999999999999999999999999999999998873.55555554 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0     0.003       1.2      65     103 ..      29      67 ..      17      69 .. 0.65
   2 ?    5.5   0.0     0.039        16      75     104 ..      64      93 ..      61      95 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.003
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT CS
  Prefoldin_2  65 eeLeerketlekeiktlekqleklekeleelkeelqkkl 103
                  + L  ++++l  e+++l  ++ +l+ e++ l+ e ++++
   CCG91818.1  29 NSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLEMNARF 67 
                  456666667777777777777777777777777766666 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.039
                  HHHHHHHHHHHHHHHHHHHHHHHHHHCCTS CS
  Prefoldin_2  75 ekeiktlekqleklekeleelkeelqkklq 104
                  +++ +++ek+l++l+ e++   e +++++ 
   CCG91818.1  64 NARFEAMEKRLDDLRSEMNSRFEAVNARFA 93 
                  567788888888888888887777777776 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.4   6.1e-05     0.024      91     155 ..      29      98 ..      21     119 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.1e-05
     DUF4795  91 keLekmleellekle...eqeealkkaldtLqeelkekld..rlelepLkeqleerlkelqkelqeamek 155
                 + L+  +++l+  ++   ++ ++l+  ++ L+ e++ + +  ++ l++L++++++r+++++ +  e+ + 
  CCG91818.1  29 NSLRGEMNSLRGEMNslrGEMNSLRGEMNSLRLEMNARFEamEKRLDDLRSEMNSRFEAVNARFAEQGKR 98 
                 4555566666555554446666666678888899999999777779999999999999998877776544 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.7   0.00069      0.27      12      44 ..      50      82 ..      46      87 .. 0.83
   2 ?    4.4   0.1     0.083        33      13      45 ..      80     108 ..      77     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00069
       HSBP1 12 qqlqdkFqtmsdqilsriDdMssriDdLEksia 44
                + l   ++++  ++  r + M++r+DdL   ++
  CCG91818.1 50 NSLRGEMNSLRLEMNARFEAMEKRLDDLRSEMN 82
                566667788889999*************87776 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.083
       HSBP1  13 qlqdkFqtmsdqilsriDdMssriDdLEksiad 45 
                 +++++F+     +  r  + ++ri+ +Ek +a+
  CCG91818.1  80 EMNSRFE----AVNARFAEQGKRIELIEKILAK 108
                 7888887....6778899999999999998875 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   1.0   4.8e-05     0.019      25      71 .]      27      73 ..      21      73 .. 0.91
   2 ?    1.1   0.1       1.3   5.1e+02      46      64 ..      73      91 ..      70     105 .. 0.42
   3 ?   -1.4   0.0       7.7   3.1e+03       7      18 ..     104     115 ..      92     120 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.8e-05
         CLZ 25 eqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRitkLEkk 71
                e ++l   +++L +++++L   ++ L +e++s   ++++R +++Ek+
  CCG91818.1 27 EMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLEMNARFEAMEKR 73
                6677888999***********************************86 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 1.3
         CLZ 46 rlarLlaeyessqrkLkqR 64
                rl  L +e++s  +  ++R
  CCG91818.1 73 RLDDLRSEMNSRFEAVNAR 91
                3333333333333333222 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 7.7
         CLZ   7 eILlKdglLDee 18 
                 +IL K   LD e
  CCG91818.1 104 KILAKAVRLDVE 115
                 355555555554 PP

>> LURAP  Leucine rich adaptor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00068      0.27      44      93 ..       9      54 ..       2      65 .. 0.50
   2 ?    3.6   0.2      0.16        62       9      41 ..      62      95 ..      55     116 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00068
       LURAP 44 ainegieavkWlleekgtltsrcssltsslysldesedtslrGsynslqd 93
                 i   i av W+ +   +l  + +sl + + sl   e +slrG +nsl+ 
  CCG91818.1  9 VIVTVIGAVVWFQN---SLRGEMNSLRGEMNSL-RGEMNSLRGEMNSLRG 54
                55566777777643...3444444444444444.2333444444444443 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.16
       LURAP  9 skeselkrleeklrklklela.nlraidvkllqq 41
                + ++  + +e++l +l+ e+   + a++ +  +q
  CCG91818.1 62 EMNARFEAMEKRLDDLRSEMNsRFEAVNARFAEQ 95
                5677889999999******962567887777766 PP

>> Phasin  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   0.00018      0.07      52      99 ..      67     112 ..      56     119 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00018
      Phasin  52 kkvaeekleevresvkskveevkekaeeqwdklekafdervakaLsrl 99 
                  +++e++l+++r++++s++e v+++ +eq +++e ++++ +aka+ rl
  CCG91818.1  67 FEAMEKRLDDLRSEMNSRFEAVNARFAEQGKRIE-LIEKILAKAV-RL 112
                 467899*************************997.5677777765.45 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5    0.0012      0.47       3      31 ..      29      57 ..      22      65 .. 0.59
   2 ?    4.4   0.3      0.12        48       2      34 ..      67     103 ..      62     113 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0012
   FlaC_arch  3 delEnklsklsteletvkkeneelsksve 31
                ++l  ++++l  e+++++ e+++l+ + +
  CCG91818.1 29 NSLRGEMNSLRGEMNSLRGEMNSLRGEMN 57
                45555555555555555555555555444 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.12
   FlaC_arch   2 idelEnklsklst....eletvkkeneelsksveelk 34 
                  + +E++l++l +    ++e v + + e  k +e ++
  CCG91818.1  67 FEAMEKRLDDLRSemnsRFEAVNARFAEQGKRIELIE 103
                 5678888888888333344456666666666666665 PP

>> SYCE1  Synaptonemal complex central element protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.4   9.6e-05     0.038      35     104 ..      28      98 ..      22     120 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.6e-05
       SYCE1  35 kealkrElDsLnaEkvhLeevlnkKqealriLqlhcqek.eseaqrkqelseeckqrieeltskiqeeklk 104
                 +++l+ E++sL++E+ +L   +n  ++ ++ L+l+++ + e+  +r + l++e++ r e+++++  e+ ++
  CCG91818.1  28 MNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLEMNARfEAMEKRLDDLRSEMNSRFEAVNARFAEQGKR 98 
                 678999*****************************998736667888999************999886544 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   0.00012     0.049      15      90 ..      33     104 ..      18     120 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 0.00012
  Syntaxin-6_N  15 nkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrrafvee 90 
                    +++sl +++++l+ + + s + e++++r e+++  + +e+ l+dL+  +   ++  + ++ + +e  +r +++e+
    CCG91818.1  33 GEMNSLRGEMNSLRGEMN-SLRGEMNSLRLEMNARFEAMEKRLDDLRSEM---NSRFEAVNARFAEQGKRIELIEK 104
                   334444444455444444.4689999999999999999999999999988...44334444444444444444444 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.8   0.00011     0.046      10     100 ..      26     118 ..      19     121 .] 0.58

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 0.00011
        Fez1  10 GEislLKqQLkdsqaevtqklseivalkaqlrelrakleek.eeeikeleesleektlelevcenelqrkkseaellrekvek.leeelkelr 100
                 GE+  L+  +   + e+++  +e+ +l++++  lr +++++ e+  k+l++ ++e +   e ++++++++ ++ el+++ + k +  +++el+
  CCG91818.1  26 GEMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLEMNARfEAMEKRLDDLRSEMNSRFEAVNARFAEQGKRIELIEKILAKaVRLDVEELK 118
                 777777777888888888888888888888777766666552333334444444555555666666666655555555543331344555555 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.7   0.00022     0.087      51     107 ..      25      82 ..      17     120 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00022
  CENP-F_leu_zip  51 kaevetlkeeieelaeelreleldLvalrsekeeLekel....qkkqervseLeslnssle 107
                     + e+++l+ e++ l+ e++ l+ ++++lr e ++L  e+    + + +r ++L    s+++
      CCG91818.1  25 RGEMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLEMnarfEAMEKRLDDLR---SEMN 82 
                     445555555555555555555555555554444443333000033333333332...2222 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   0.00014     0.056     221     291 ..      28      98 ..      15     105 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00014
       FAM76 221 vtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeakekieklekkirellke 291
                 ++ L+ e++sl+ ++++   e+ +   ++ +l+ e+    + ++++l +l++e++++ e+++++ +e  k 
  CCG91818.1  28 MNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLEMNARFEAMEKRLDDLRSEMNSRFEAVNARFAEQGKR 98 
                 56677777777777777777777777777777777777777777777777777777777777776666555 PP

>> MIF4G_like_2  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   0.00014     0.055     157     222 ..      28      94 ..      11     118 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00014
  MIF4G_like_2 157 lskvnkrvkkvrqeleelkkkeeeekakeeed...keeeeeleraeekleaaqkeqkelflivferlve 222
                   ++ + ++++ +r e+++l+ + ++   + e++    e + + e++e++l+++++e++  f++v+ r++e
    CCG91818.1  28 MNSLRGEMNSLRGEMNSLRGEMNSL--RGEMNslrLEMNARFEAMEKRLDDLRSEMNSRFEAVNARFAE 94 
                   4444444444555554444443322..12222455566789**************************87 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0     0.002       0.8      64      92 ..      27      55 ..      22      65 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.002
     DUF2730 64 dlekLkllladlrgelkaleaevrqlshq 92
                ++++L+ +++ lrge++ l+ e+++l+  
  CCG91818.1 27 EMNSLRGEMNSLRGEMNSLRGEMNSLRGE 55
                55555556666666666666555555533 PP

>> DUF2173  Uncharacterized conserved protein (DUF2173)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.11        43       5      32 ..      10      37 ..       6      44 .. 0.83
   2 ?    7.1   0.2     0.017       6.7      19      61 ..      45      87 ..      40      98 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.11
     DUF2173  5 LmklpGvvAagefsddGelveykGelde 32
                ++++ G+v+ ++ s +Ge+ + +Ge++ 
  CCG91818.1 10 IVTVIGAVVWFQNSLRGEMNSLRGEMNS 37
                6788899*****************9986 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.017
     DUF2173 19 ddGelveykGeldeeeaemlakmcaantrmvkmqadglealtg 61
                 +Ge+ + +Ge++   +em a++ a  +r+ +  +++ +++ +
  CCG91818.1 45 LRGEMNSLRGEMNSLRLEMNARFEAMEKRLDDLRSEMNSRFEA 87
                58*********************99999999998888777755 PP

>> COMP  Cartilage oligomeric matrix protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0037       1.5      10      35 ..      28      53 ..      20      65 .. 0.61
   2 ?   -1.3   0.0       7.7   3.1e+03      16      24 ..      73      81 ..      67      85 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0037
        COMP 10 LseltqllkeLreelrqQvkEisfLR 35
                ++ l   +++Lr e+   + E++ LR
  CCG91818.1 28 MNSLRGEMNSLRGEMNSLRGEMNSLR 53
                44444455556666666666665555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 7.7
        COMP 16 llkeLreel 24
                 l +Lr e+
  CCG91818.1 73 RLDDLRSEM 81
                578899888 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   0.00038      0.15       3      63 ..      31      90 ..      25     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00038
      DUF883  3 leaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaae 63
                l+ e++sl+ ++++l  e ++  + e+++lR ++++r+e++ +rl+d++ ++  r +++ +
  CCG91818.1 31 LRGEMNSLRGEMNSLRGEMNS-LRGEMNSLRLEMNARFEAMEKRLDDLRSEMNSRFEAVNA 90
                678999999999999877775.677899999999999999999999999999999988765 PP

>> DUF1178  Protein of unknown function (DUF1178)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00032      0.13      78     115 ..      64     101 ..      26     119 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00032
     DUF1178  78 aekekeleaalaelrrkveknsedVGerFaeeArkihy 115
                 +++ +++e++l +lr+++++++e V  rFae+ ++i  
  CCG91818.1  64 NARFEAMEKRLDDLRSEMNSRFEAVNARFAEQGKRIEL 101
                 5678899***************************9975 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0017      0.68      17      67 ..      64     108 ..       7     118 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0017
     NPV_P10  17 ddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLnp 67 
                 + + +a+++++dd+++++      n++++a +a  ae  + +e I++iL +
  CCG91818.1  64 NARFEAMEKRLDDLRSEM------NSRFEAVNARFAEQGKRIELIEKILAK 108
                 333444444555555433......336666666666666699999999974 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1      0.01       4.1      13      50 ..      25      62 ..      23      72 .. 0.72
   2 ?    3.7   0.2      0.19        77       6      21 ..     104     119 ..      99     120 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.01
       TSC22 13 rEeVevLkekIkeLeernseleeENslLkalaspeqle 50
                r e + L+ +   L  +++ l+ E + L+  +++  le
  CCG91818.1 25 RGEMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLE 62
                56777777777778888888888888777777766555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.19
       TSC22   6 sHLmfAVrEeVevLke 21 
                 + L  AVr  Ve+Lk+
  CCG91818.1 104 KILAKAVRLDVEELKK 119
                 55777*********97 PP

>> Hemagglutinin  Haemagglutinin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2    0.0056       2.2     375     415 ..      30      77 ..       5      84 .. 0.45
   2 ?    4.2   0.2     0.029        12     375     412 ..      69     106 ..      62     118 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0056
                    HHHHHHHHHHHHTTT...EEEBXSSXXTTT....THHHHHHHHHHHHH CS
  Hemagglutinin 375 kitkkvnsliekenk...qleavgkelnel....ekrieeldkkvddg 415
                     +  ++nsl   +n    +++++ +e+n l    + r e ++k++dd+
     CCG91818.1  30 SLRGEMNSLRGEMNSlrgEMNSLRGEMNSLrlemNARFEAMEKRLDDL 77 
                    333333333333332112334444444433111122333444444444 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.029
                    HHHHHHHHHHHHTTTEEEBXSSXXTTTTHHHHHHHHHH CS
  Hemagglutinin 375 kitkkvnsliekenkqleavgkelnelekrieeldkkv 412
                     + k+++ l   +n ++eav   + e  krie ++k +
     CCG91818.1  69 AMEKRLDDLRSEMNSRFEAVNARFAEQGKRIELIEKIL 106
                    56788899999999999999999999999999888765 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.7    0.0012      0.46       9      61 ..      27      72 ..      17     107 .. 0.48
   2 ?    3.7   0.3      0.23        93       6      36 ..      63      86 ..      61     120 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0012
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXX CS
        YabA  9 kleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkeke 61
                ++++l  ++++l  e+++l+ e+++l  e ++L+le       ++ + ++ ++
  CCG91818.1 27 EMNSLRGEMNSLRGEMNSLRGEMNSLRGEMNSLRLE-------MNARFEAMEK 72
                344444444444444444444444444444444444.......4222222111 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.23
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  6 lfdkleeleeqleelleeleelkeelaelle 36
                + +++e++e++l++l +e++       + +e
  CCG91818.1 63 MNARFEAMEKRLDDLRSEMN-------SRFE 86
                34445555555555555544.......3333 PP

>> Stn1  Telomere regulation protein Stn1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       4.1   1.6e+03      45      62 ..       5      22 ..       2      25 .. 0.63
   2 ?   10.5   0.1   0.00053      0.21     109     154 ..      35      83 ..      27     117 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.1
                ..-B---------EEETT CS
        Stn1 45 neisiyaslirdilfyln 62
                + i +   +i+ ++++ n
  CCG91818.1  5 QTITVIVTVIGAVVWFQN 22
                455555667777777766 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00053
                 -HHHHHHHTT-TT-EEEEEEEEESSS-EEEEEE..EE.EE-STTHHHHH CS
        Stn1 109 llslgieivaliGstvavfGklnreevelevef..le.lvkglesEief 154
                  +sl +e+++l G+   + G +n  ++e+++ f  +e  +++l sE++ 
  CCG91818.1  35 MNSLRGEMNSLRGEMNSLRGEMNSLRLEMNARFeaMEkRLDDLRSEMNS 83 
                 689999*****************99999988544499999******986 PP

>> DUF4156  Domain of unknown function (DUF4156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0096       3.8      33      62 ..      18      47 ..       8      49 .. 0.79
   2 ?    2.8   0.1      0.37   1.5e+02      39      54 ..      45      60 ..      41      67 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0096
     DUF4156 33 nwlsgiftsnkelvrgaandLrneAaalGg 62
                 w+++++  + +++rg++n Lr e   l g
  CCG91818.1 18 VWFQNSLRGEMNSLRGEMNSLRGEMNSLRG 47
                488899999999999999999988777765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.37
     DUF4156 39 ftsnkelvrgaandLr 54
                +  + +++rg++n Lr
  CCG91818.1 45 LRGEMNSLRGEMNSLR 60
                4456667777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1308  (0.0729544); expected 358.6 (0.02)
Passed bias filter:                      867  (0.0483574); expected 358.6 (0.02)
Passed Vit filter:                       155  (0.00864521); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              45  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 838.73
//
Query:       CCG91819.1  [L=93]
Description: hypothetical protein MFUM_220020 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       194  (0.0108205); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 723.69
//
Query:       CCG91820.1  [L=58]
Description: hypothetical protein MFUM_220021 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       172  (0.0095934); expected 358.6 (0.02)
Passed bias filter:                      149  (0.00831056); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 410.65
//
Query:       CCG91821.1  [L=42]
Description: hypothetical protein MFUM_220022 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 308.00
//
Query:       CCG91822.1  [L=355]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.043   13.7   0.1      0.079   12.8   0.1    1.4  1  TrbI             Bacterial conjugation TrbI-like protein
       0.14   11.8   0.4       0.32   10.7   0.2    1.6  1  Transposon_TraM  Conjugative transposon, TraM


Domain annotation for each model (and alignments):
>> TrbI  Bacterial conjugation TrbI-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   8.8e-06     0.079      37      80 ..     308     346 ..     282     353 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.8e-06
                 SS-EEE-TT-EEEEEEEEEESSSSEEEEEEEEEEE-TT--EEES CS
        TrbI  37 grallIpkgsrligeydsavakgqeRvlvvwtrlilpdgksiel 80 
                  +   Ipkg+r++g++      g++ + v +tr ilp g+ + +
  CCG91822.1 308 YT---IPKGTRAFGKVVK--NDGRNGMEVQFTRAILPRGTIVKF 346
                 33...7********8888..5889***************99988 PP

>> Transposon_TraM  Conjugative transposon, TraM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   3.5e-05      0.32      63     112 ..     292     344 ..     283     350 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.5e-05
  Transposon_TraM  63 GsrvrLrLleditvggtlipkgtllyGtvkfqgeRleikis...sieyegkii 112
                      Gs v +r++ +i+v   +ipkgt  +G+v  + +R  ++++    i  +g+i+
       CCG91822.1 292 GSDVTIRITRTIRVLSYTIPKGTRAFGKVVKNDGRNGMEVQftrAILPRGTIV 344
                      999**************************999999888775222455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       892  (0.0497518); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2678.32
//
Query:       CCG91823.1  [L=195]
Description: Globin domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-20   72.3   0.0    5.6e-20   71.8   0.0    1.1  1  Protoglobin  Protoglobin


Domain annotation for each model (and alignments):
>> Protoglobin  Protoglobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   3.1e-24   5.6e-20      10     155 ..      18     160 ..      11     162 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 3.1e-24
                  HHTT-SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSHHHHHHHCHHCHHHHHHHHHHHHHHHCCCSSCCHHHHHHHHHHHHHHCHCT--HHHHHHC CS
  Protoglobin  10 sflglteedlaaLralapliealipavvdafYekllsfpetarifetssqierlkdflksyllklfsgpfdsayveyldkvGkmhtrlgleprwyiaa 107
                  +  ++++ed + L +l+p++ +l +++v+ fY+ l ++p ta if++   +e +  +l+++++++++gpfd +y+ ++ +vG +h r +++   +i++
   CCG91823.1  18 ESCRFNKEDGEKLLSLRPYLYPLEDKLVKGFYDLLYNHPPTASIFDP-TERENREWTLRNWWRRTLDGPFDLQYWTWQAAVGIIHIRRKVKNPMMIGM 114
                  5678*******************************************.99************************************************ PP

                  HHHHHHHHHHHHCCCS.-SHHHHHHHHHHHHHHHHHHHHHHCGGGBXT CS
  Protoglobin 108 lglvqevlleallekeklsaaektalvkalnKliwldndlaleaYvre 155
                   g++++ + + +++    s  e+  + + l +l+   ++l +e Y + 
   CCG91823.1 115 WGWILNFIGKEISNYL--SYNEFLSATEVLHRLAATAQALTAESYLHH 160
                  ************9988..***************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.43
# Mc/sec: 1352.37
//
Query:       CCG91824.1  [L=168]
Description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-61  205.1   0.0    7.8e-61  204.9   0.0    1.0  1  YgbB      YgbB family


Domain annotation for each model (and alignments):
>> YgbB  YgbB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.9   0.0   4.4e-65   7.8e-61       1     154 [.       4     157 ..       4     158 .. 0.99

  Alignments for each domain:
  == domain 1  score: 204.9 bits;  conditional E-value: 4.4e-65
                 EEEEEEEEEEEEEEECEEEETTEEEEESEEEESSSTCHHHHHHHHHHHHHHTT--SHHHHSTTTCGGCTTTCHHHHHHHHHHHHHHTTEEEEEEEEEEE CS
        YgbB   1 iriGlGyDvHrlaegrklvlgGveieaekgllahSDgDvllhAlvDAllGalalgdigelfpdtdpkykgadSaelLeevlellkekgykivnvdvtii 99 
                 ir+G+GyDvH+l++grklv+gGvei+ e gll+hSDgDvl+hA++DA+lGa++ +dig +fp+++p++k+++S+++L+e+ +ll+++++k++n+d ++i
  CCG91824.1   4 IRTGIGYDVHKLVKGRKLVIGGVEIPFEYGLLGHSDGDVLIHAMADAILGAIGKRDIGFFFPNSEPRWKDVSSSVFLNEISQLLAKENWKVENIDSVVI 102
                 69************************************************************************************************* PP

                 CSSSTCGGGHHHHHHHHHHHHTS-GGGEEEEEEETTTSHHHHTTSEEEEEEEEEE CS
        YgbB 100 aekpklapykeamrenlakllgleeeqvsvkattteklgfvGrgegiaalavvll 154
                 +e+pk++p++++m+ +++  lg++ +q+++katt+eklgfvGr egiaa+a +ll
  CCG91824.1 103 CEQPKISPFIDEMKIKISLSLGIDPSQIGIKATTNEKLGFVGRAEGIAAFASCLL 157
                 ****************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1198.14
//
Query:       CCG91825.1  [L=289]
Description: 3-hydroxyisobutyrate dehydrogenase and cupin domain (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-30  106.6   0.0      2e-30  106.1   0.0    1.2  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
      2e-14   53.9   0.0      3e-14   53.3   0.0    1.2  1  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
    2.6e-05   24.7   0.0    5.5e-05   23.7   0.0    1.5  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    0.00018   20.9   0.0    0.00026   20.4   0.0    1.2  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    0.00054   20.0   0.1      0.001   19.1   0.1    1.5  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.049   13.5   0.0        0.1   12.5   0.0    1.5  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.091   13.1   0.0       0.35   11.3   0.0    2.0  2  BRCT            BRCA1 C Terminus (BRCT) domain


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.0   7.8e-34     2e-30       1     154 [.       5     159 ..       5     161 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 7.8e-34
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HH CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstsspe 95 
                    ki++iG+G +G+++a++ll  ++++ vynrt++k+ +l+  gak+++s++e + +++v+++++++ + +++++++   +++  g+++ +++t+spe
     CCG91825.1   5 KIALIGTGLLGHSIAERLLLTNHSLLVYNRTASKAMDLIPLGAKLCSSVSETIGTANVIFLVLSDATVTKNLLFEaNGQSAFHGKTFFQMGTISPE 100
                    79*************************************************************************5458889************** PP

                    HHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEEEE CS
  NAD_binding_2  96 dtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigakvt 154
                    +++ela +++ekg  f++ PV G++++A++GtL +m GGsee+++r   +l+a+g+ ++
     CCG91825.1 101 ESEELALKIQEKGGAFVELPVLGSKNEAKSGTLLLMFGGSEEEYHRWYTLLSALGKVFF 159
                    *******************************************************9554 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   1.2e-17     3e-14       4     120 ..     167     283 ..     165     285 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.2e-17
  NAD_binding_11   4 qavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvlsrdfd.pgFaldlmlKDlglalelareagaplpllal 97 
                     ++ Kl+ n l+  +++a s  + +  k  +dpe  +e++++ss  + ++++klp r+l++d+   +F+l+l+lKDl l+l++ +++ ++ + l++
      CCG91825.1 167 AVLKLALNQLIISSIIAFSTSFSMILKERIDPELYMEILRKSSLYCATFDKKLP-RILNKDYSsANFTLKLLLKDLTLCLKETEKLSIQSEPLKA 260
                     689***************************************************.67877776268***************************** PP

  NAD_binding_11  98 aeqlyaaaaaegggdaDhsaivr 120
                      e+l+++a ++g +++D+s++ +
      CCG91825.1 261 YEKLIRMAIEQGFENNDYSSVFE 283
                     *******************9976 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.1e-08   5.5e-05       1      69 [.       5      67 ..       5      86 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.1e-08
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlav 69
                   ki++iG+G +g+++a++ll ++   h+++v  +r+ +ka  l    g+k+++ + +e++  a+v++l +
     CCG91825.1  5 KIALIGTGLLGHSIAERLLLTN---HSLLVY-NRTASKAMDLIPL-GAKLCS-SVSETIGTANVIFLVL 67
                   79********************...****55.*******999765.789999.99999999*****965 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     1e-07   0.00026      37     111 ..       4      79 ..       1      95 [. 0.92

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1e-07
                   SEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHHHH-SEEEE-S--STTTTTSBSH CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv.sleellaesDivslhlpltpetrhlina 111
                    ++++iG+G +G+++a+rl   +  +++y+r+ +k  +   lg++l+ s+ e + ++ +++l+l     t++l+ +
    CCG91825.1   4 HKIALIGTGLLGHSIAERLLLTNHSLLVYNRTASKAMDLIPLGAKLCsSVSETIGTANVIFLVLSDATVTKNLLFE 79 
                   5799******************************99999*****88779****************99999999755 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   4.1e-07     0.001      12      81 ..       3      65 ..       1      89 [. 0.80

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.1e-07
                  T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE CS
  Shikimate_DH 12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvis 81
                   +k+ liG+G +++ +a+ Ll  +   ++v NRt ++a +l          a+  ++++e +  a+v++ 
    CCG91825.1  3 VHKIALIGTGLLGHSIAERLLLTNHS-LLVYNRTASKAMDLIPLG------AKLCSSVSETIGTANVIFL 65
                  5799*****************98888.*************95432......4577778888888888775 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     4e-05       0.1       1      35 [.       5      39 ..       5      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4e-05
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseeal 35
                k+a iG+G++G++ia+ ++ ++++  +++++++++
  CCG91825.1  5 KIALIGTGLLGHSIAERLLLTNHSLLVYNRTASKA 39
                69***********************9999977665 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00014      0.35       4      36 ..      84     116 ..      81     171 .. 0.84
   2 ?   -1.5   0.0       1.3   3.3e+03       4      29 ..     236     265 ..     234     272 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
                 TTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEE CS
        BRCT   4 llfhgckfvitgvldnftrdeleelikehGGkv 36 
                   fhg++f+  g+ + ++ +el  +i+e GG +
  CCG91825.1  84 SAFHGKTFFQMGTISPEESEELALKIQEKGGAF 116
                 56*****************************88 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
                 TTTTTEEEEE....EESTSSHHHHHHHHHH CS
        BRCT   4 llfhgckfvi....tgvldnftrdeleeli 29 
                 ll+++++ ++    + + ++++ + +e+li
  CCG91825.1 236 LLLKDLTLCLketeKLSIQSEPLKAYEKLI 265
                 678888999975555555555555556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2163.97
//
Query:       CCG91826.1  [L=95]
Description: 3-hydroxyisobutyrate dehydrogenase and cupin domain (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-23   82.6   0.0    1.4e-23   82.3   0.0    1.1  1  Cupin_3   Protein of unknown function (DUF861)
     0.0032   17.1   0.0     0.0042   16.8   0.0    1.3  1  Cupin_2   Cupin domain
     0.0058   16.4   0.0     0.0061   16.3   0.0    1.1  1  EutQ      Ethanolamine utilisation protein EutQ
     0.0062   16.3   0.0     0.0071   16.1   0.0    1.1  1  Cupin_6   Cupin


Domain annotation for each model (and alignments):
>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.0   3.1e-27   1.4e-23       2      74 .]      20      92 ..      19      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 3.1e-27
                TCCTCCEEEEEEEECEEEEECESSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTEEECCCEEEEEEEEE CS
     Cupin_3  2 gelgvfswgiwectpGkfrltyeedEfcyileGevkvtpeggetvelraGDlvvlpkglsgtwdvsetvrKaY 74
                +elgv++w+iwe   +kf ++y+e+E+cy+leGe  +   + +++++ +GDlv +pk+ls++w++   v+K+Y
  CCG91826.1 20 KELGVSHWPIWEKDVSKFDWQYPEKEICYLLEGEAIISSPKNKPIRIVKGDLVIFPKDLSCQWEIVKKVKKHY 92
                799********************************************************************** PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   9.5e-07    0.0042      19      52 ..      43      77 ..      25      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.5e-07
                EEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT CS
     Cupin_2 19 edeffyVleGegelt.vdgeeveleaGdsvyfpag 52
                e e+ y leGe+ +    ++++++ +Gd+v+fp+ 
  CCG91826.1 43 EKEICYLLEGEAIISsPKNKPIRIVKGDLVIFPKD 77
                45*********9999999***************86 PP

>> EutQ  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.4e-06    0.0061      83     143 ..      31      92 ..       9      94 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.4e-06
        EutQ  83 emkettfdwtlnydeidyvieGrldvlid.GrkvvaeaGdviliPkgskiefsvtdeakfly 143
                 e + + fdw     ei y++eG+  +     + +    Gd+++ Pk+ + ++ + +++k  y
  CCG91826.1  31 EKDVSKFDWQYPEKEICYLLEGEAIISSPkNKPIRIVKGDLVIFPKDLSCQWEIVKKVKKHY 92 
                 455578*****************998875155688899**************9999998665 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.6e-06    0.0071      34      68 ..      44      77 ..      21      82 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.6e-06
     Cupin_6 34 lalhvvlrGscwlidpasgepvrLsagdvvllpgg 68
                 +++ +l+G++ + +p+ ++p+r+ +gd+v++p++
  CCG91826.1 44 KEICYLLEGEAIISSPK-NKPIRIVKGDLVIFPKD 77
                578999********777.89*************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 714.50
//
Query:       CCG91827.1  [L=574]
Description: Signal transduction histidine kinase with GAF domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-29  103.1   0.0    4.7e-14   52.9   0.0    3.2  4  GAF_2        GAF domain
    3.7e-21   75.7   0.1      1e-20   74.3   0.1    1.8  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.9e-18   67.4   0.0    2.6e-09   37.8   0.0    2.4  2  GAF          GAF domain
    2.6e-17   63.4   0.0    6.2e-10   39.5   0.0    2.4  2  GAF_3        GAF domain
    1.1e-11   44.5   0.6    1.1e-11   44.5   0.6    4.1  4  HisKA        His Kinase A (phospho-acceptor) domain
    1.2e-05   25.1   0.3    2.8e-05   23.9   0.0    1.7  2  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
    0.00093   19.2   0.1      0.002   18.1   0.1    1.5  1  HATPase_c_2  Histidine kinase-like ATPase domain
     0.0012   19.1   0.9     0.0029   17.8   0.9    1.7  1  DUF3369      Domain of unknown function (DUF3369)
     0.0068   16.3   0.0      0.018   15.0   0.0    1.6  1  HATPase_c_5  GHKL domain
  ------ inclusion threshold ------
        0.1   12.5   5.9        1.9    8.4   0.2    2.9  3  CHASE3       CHASE3 domain


Domain annotation for each model (and alignments):
>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   2.6e-17   4.7e-14       3     135 ..      30     160 ..      29     163 .. 0.80
   2 !   45.8   0.0     4e-15   7.1e-12       2     137 ..     192     332 ..     191     333 .. 0.81
   3 ?   -3.0   0.0       4.7   8.4e+03     114     132 ..     387     405 ..     348     410 .. 0.76
   4 ?   -0.2   0.0      0.62   1.1e+03       4      48 ..     470     523 ..     467     557 .. 0.59

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 2.6e-17
                 HHHHHHHHHHHHHHHS.S..EEEEEEE-TTS-.EEEE.EEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EEEEEE CS
       GAF_2   3 dleelldlvldelvel.gaalgyillvdddgg.lrla.awgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglpaghaglrsflavPl 98 
                 +++ + ++ l+ ++++ +++ g ++l ++++g l+++ ++g  ++    +l  ++geg++g+++ +g+ + ++d+  d++       ++++rs+lavP+
  CCG91827.1  30 TVQGVIRHFLKIAIDItQSDSGSFVLFNPNTGfLDIEaSFGLKRRAKKTKL--RVGEGITGWVATSGKTLRIDDVSKDWRYV---SIDPRIRSELAVPI 123
                 688999*********945998866666666662443344444444445555..99*******************88866554...467*********** PP

                 .-TTS---EEEEES......--HHHHHHHHHHHHHHHH CS
       GAF_2  99 .isegrvvGvlnlyankppafdeedlelLeelaeqiai 135
                   +   +vGvln+ +++++ + +++  +Le++a+ +a+
  CCG91827.1 124 eWQS-TIVGVLNVDSHEKSHYKPQHEKQLETIASEAAQ 160
                 7775.6*******99********************997 PP

  == domain 2  score: 45.8 bits;  conditional E-value: 4e-15
                 HHHHHHHHHHHHHHHHS.S..EE.EEEEE-TTS-EEEEEEEES-TTSTT-S-B..---TTHHHHHHHHTS-EEES-.GGG-S-HHHHHHHHHTT--EEE CS
       GAF_2   2 adleelldlvldelvel.gaalg.yillvdddgglrlaawgeaeeefgaaldr..plgeglvgealrtgrpvilnd.leedpdkkglpaghaglrsfla 95 
                  dle +l+ v++ +v + +a  g  +ll  ++ +l l a++   +e+  +     +l+e+++g ++++ +p+ ++d  ee+  ++++ a + ++ sfla
  CCG91827.1 192 EDLEKTLEGVVRNAVFFmDANKGkLFLLNREKSELLLIASYDSNKEDIKKEKMviSLSESIFGVVVKKCKPLAIQDiHEESLMHCPEFALENKMVSFLA 290
                 689999999999999965899884444444455544444444444443333223366999****************999999999************** PP

                 EEE-TTS---EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2  96 vPlisegrvvGvlnlyankppafdeedlelLeelaeqiaiai 137
                 vPl+ + +  G l+++++ p++f+ ++++lL++la++ a+a+
  CCG91827.1 291 VPLVFGKECQGLLAIFTSTPHRFSNSQIQLLQTLADLSAVAL 332
                 *****99*********************************98 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.7
                 ....--HHHHHHHHHHHHH CS
       GAF_2 114 kppafdeedlelLeelaeq 132
                 k+++ +++dle+Le  ++q
  CCG91827.1 387 KEDPVSQRDLEVLEKKMSQ 405
                 5666788888888866555 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHHHHSS..EE...EEEE...E-TTS-EEEE....EEEES-TTSTT CS
       GAF_2   4 leelldlvldelvelgaalg...yill...vdddgglrla....awgeaeeefga 48 
                 ++ +l+l+l++++ +g + g   +i+    +d++++l ++     +g++++e  +
  CCG91827.1 470 EQAVLNLILNAIQAMG-EGGmleIIADiqhDDAEPYLAIRvkdtGSGMTQAEIED 523
                 6889999999999995.33322255553334455554333666644444444443 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.1   5.7e-24     1e-20       2     110 ..     465     572 ..     464     574 .] 0.91

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 5.7e-24
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE..EE..TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEE CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveika..se..ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwves 96 
                 d  +++q++ nl+ Na+++ +++g +e+  +   ++   +l i+v+D+G G+++++++ +f +f +     r+++gtGlGl+iv+k++e ++G+++v+s
  CCG91827.1 465 DRAQVEQAVLNLILNAIQAMGEGGMLEIIADIqhDDaePYLAIRVKDTGSGMTQAEIEDIFVPFLT-----RKKEGTGLGLAIVQKIMENHRGKVEVHS 558
                 667899*************88999999988876522557***************************.....99************************** PP

                 ETTTEEEEEEEEES CS
   HATPase_c  97 epgrGttftftlpl 110
                 + g+G+tf + +pl
  CCG91827.1 559 TLGQGSTFSLLFPL 572
                 *********98886 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   2.5e-09   4.4e-06      10     131 ..      39     160 ..      30     162 .. 0.75
   2 !   37.8   0.0   1.5e-12   2.6e-09       1     133 []     193     332 ..     193     332 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.5e-09
                 HHHHHHHHTESEEEEEE..EEETTEEECEEEEECC........EEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEET CS
         GAF  10 veelrellgadrvalyl..pdydGlhydipqasrw........lfmkngrgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvnd 98 
                 ++ + ++++ d +++ l  p   G  + ++ ++++        +  ++g+gi g+v+++g++l+i+d+++d r+           + irs l+vP+  +
  CCG91827.1  39 LKIAIDITQSDSGSFVLfnP-NTG--F-LDIEASFglkrrakkTKLRVGEGITGWVATSGKTLRIDDVSKDWRYVS-------IDPRIRSELAVPIEWQ 126
                 55666677777777766532.334..2.333333333333332666779******************99****999.......4699************ PP

                 TEEEEEEEEEESSS.CSHHHHHHHHHHHHHHHHH CS
         GAF  99 gelwGllvlhnpsp.pftreelellqvladqvav 131
                   ++G+l ++++ + ++ ++ +  l+++a+ +a+
  CCG91827.1 127 STIVGVLNVDSHEKsHYKPQHEKQLETIASEAAQ 160
                 ***********55557999999999999999886 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 1.5e-12
                 SHHHHHHHHHHHHHHHHTESEEEEEE...........EEETTEEECEEEEECC......EEEET..TSHHHHHHHHHSSSEEESTGGTSTT.HHTTHHH CS
         GAF   1 dleelldtvveelrellgadrvalyl...........pdydGlhydipqasrw......lfmkn..grgicgqvlatgqplvipdstpdpr.faqynrr 79 
                 dle++l+ vv+ +  +++a  + l+l           +            ++         m+    ++i+g v+++ +pl i+d+ +++  +++    
  CCG91827.1 193 DLEKTLEGVVRNAVFFMDANKGKLFLlnreksellliA----------SYDSNkedikkEKMVIslSESIFGVVVKKCKPLAIQDIHEESLmHCP---- 277
                 8999********************99554332222221..........211112223332222244777999*************7544444555.... PP

                 HHHHHTTESEEEEEEEEETTEEEEEEEEEESSS.CSHHHHHHHHHHHHHHHHHHH CS
         GAF  80 dllenmgirsslvvPlvndgelwGllvlhnpsp.pftreelellqvladqvaval 133
                 +++ +  ++s+l+vPlv + e+ Gll++   +p +f+ ++++llq+lad+ aval
  CCG91827.1 278 EFALENKMVSFLAVPLVFGKECQGLLAIFTSTPhRFSNSQIQLLQTLADLSAVAL 332
                 788889999*********************88889***************99997 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.2e-07   0.00021       5     124 ..      34     159 ..      30     163 .. 0.86
   2 !   39.5   0.0   3.4e-13   6.2e-10       1     127 [.     193     332 ..     193     334 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.2e-07
       GAF_3   5 llekllkllvkllgaevgalllldedgnklqvaagwdgkpalse.sldedsalarralssgevvsepsfaeedg.....lpdraalavPLvagrqviGv 97 
                 ++ + lk + +++++++g+++l+++   +l + a+++ k + ++  l+ ++  + ++++sg  +   ++ +  +      + r+ lavP+  +++ +Gv
  CCG91827.1  34 VIRHFLKIAIDITQSDSGSFVLFNPNTGFLDIEASFGLKRRAKKtKLRVGEGITGWVATSGKTLRIDDVSKDWRyvsidPRIRSELAVPIEWQSTIVGV 132
                 66677888999***************99********888888777999*************99888776663222333356899*************** PP

       GAF_3  98 lalastkprafdaedlelleslArqia 124
                 l + s++++ + ++++  le++A+ +a
  CCG91827.1 133 LNVDSHEKSHYKPQHEKQLETIASEAA 159
                 ************************998 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 3.4e-13
       GAF_3   1 sldellekllkllvkllgaevgalllldedgnklqvaagw.dgkpalse...sldedsalarralssgevvsepsfaeedglpd.........raalav 86 
                 +l+++le +++ +v  ++a+ g l+ll++++++l  +a++  +k+++++   ++   ++ +  +++   +++ ++ +ee+ +++          + lav
  CCG91827.1 193 DLEKTLEGVVRNAVFFMDANKGKLFLLNREKSELLLIASYdSNKEDIKKekmVISLSESIFGVVVKKCKPLAIQDIHEESLMHCpefalenkmVSFLAV 291
                 6899************************************98889997777777799************************999999999888999*** PP

       GAF_3  87 PLvagrqviGvlalastkprafdaedlelleslArqiatai 127
                 PLv g + +G+la+ ++ p  f++++ +ll++lA++ a a+
  CCG91827.1 292 PLVFGKECQGLLAIFTSTPHRFSNSQIQLLQTLADLSAVAL 332
                 ******************9***************9988887 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.24   4.2e+02      32      50 ..     142     167 ..     127     188 .. 0.65
   2 ?   -2.3   0.2       2.6   4.7e+03      42      56 ..     329     343 ..     316     350 .. 0.51
   3 !   44.5   0.6   6.3e-15   1.1e-11       1      64 [.     356     419 ..     356     422 .. 0.94
   4 ?    3.2   0.2     0.051        91      47      64 ..     425     442 ..     424     444 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.24
                 T-HSSCHHHHHHHHHHHH.......H CS
       HisKA  32 klteelkeyletiesear.......r 50 
                  + ++ +++leti sea         
  CCG91827.1 142 HYKPQHEKQLETIASEAAqwlsyawE 167
                 57788888999999988866665553 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHHHHH CS
       HisKA  42 etiesearrldhlve 56 
                 +++   ar l+++v+
  CCG91827.1 329 AVALAKARLLERIVQ 343
                 444444444444443 PP

  == domain 3  score: 44.5 bits;  conditional E-value: 6.3e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsri 64 
                 slg ++a +aHE+r+PL++i + ++ Lk ++k ++  ++ le++e+   +l+++v+++L ++r 
  CCG91827.1 356 SLGLLAAEIAHEIRNPLTVIHMLLHSLKMRIKEDPVSQRDLEVLEKKMSQLNRIVDQVLVIGRS 419
                 6899***********************9999999************************998876 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.051
                 HHHHHHHHHHHHHHHCCH CS
       HisKA  47 earrldhlvedlLdlsri 64 
                 ea  ++++++d+L lsr 
  CCG91827.1 425 EAMKVEDIIDDVLLLSRH 442
                 577899**********96 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.2   9.3e+03      90     117 ..     151     179 ..     148     190 .. 0.62
   2 !   23.9   0.0   1.6e-08   2.8e-05       3      62 ..     469     533 ..     467     563 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.2
  HATPase_c_3  90 vitkkegess..tltldvdkidkenekvle 117
                  ++t +++  +   + +++dk+ ++  k+l+
   CCG91827.1 151 LETIASEAAQwlSYAWEIDKLRQQA-KQLS 179
                  5565555444467888888887644.4444 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 1.6e-08
  HATPase_c_3   3 lekAlaelvdNsldAdaen......vkievnknrgktgeivieDdGkGmseeelknalrlatsske 62 
                  +e+A++ l+ N+++A  e        +i+ ++ +     i+++D G+Gm+++e+++ + +  ++k+
   CCG91827.1 469 VEQAVLNLILNAIQAMGEGgmleiiADIQHDDAE-PYLAIRVKDTGSGMTQAEIEDIFVPFLTRKK 533
                  589***********99988886665566666654.679******************8875554444 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   1.1e-06     0.002      28     111 ..     465     549 ..     441     564 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
  HATPase_c_2  28 lldeirlaveEactNavehayleap.egpvevrlesdeealtvevaDsGpgfdpetlpdpteeepkeslkegGrGlalikglvDe 111
                  ++++++ av  ++ Na+++  +++  e    ++ +++e  l ++v+D G g + ++++d  ++ ++ +++  G+Gla+++++++ 
   CCG91827.1 465 DRAQVEQAVLNLILNAIQAMGEGGMlEIIADIQHDDAEPYLAIRVKDTGSGMTQAEIEDIFVPFLTRKKEGTGLGLAIVQKIMEN 549
                  55689999999999***99999988666667777777888***********99999******999******************86 PP

>> DUF3369  Domain of unknown function (DUF3369)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.9   1.6e-06    0.0029      11     168 .]     168     341 ..     163     341 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.6e-06
     DUF3369  11 lraieasRrGLekIieasaeLfelrsleefaegvltqlasllnlk..........kdglvcaskakaaaske....lkvlaatgkfesligk....ple 91 
                 + +++++ + L+  ie  +++ ++++le+ +egv++    +++ +          k+ l+++ + ++++++     + +  +   f   ++k     ++
  CCG91827.1 168 IDKLRQQAKQLSTLIEIGRTIVSQEDLEKTLEGVVRNAVFFMDANkgklfllnreKSELLLIASYDSNKEDIkkekMVISLSESIFGVVVKKckplAIQ 266
                 7788888999***************************99999775455555555555566666555544433567899999999999998889888999 PP

     DUF3369  92 eladeelrelleraleskkslfeddfvvlyfktkegsegvlylettrplseldrkLlevFannvavafeNvllneel 168
                 ++++e+l+   e ale+k   f   +v l f ++ +   +++ +t+++ s+ +++Ll+ +a   ava+ +++l+e++
  CCG91827.1 267 DIHEESLMHCPEFALENKMVSFL--AVPLVFGKECQGLLAIFTSTPHRFSNSQIQLLQTLADLSAVALAKARLLERI 341
                 999*******************6..7777899999**************************************9986 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   9.8e-06     0.018      11      89 ..     474     558 ..     466     567 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.8e-06
  HATPase_c_5  11 gnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg....ekkkle..sskskkeehGiGlksireivkkykgnlsiea 89 
                   nl+ NAi+a+ +    + + +++    +  l i+++ + +g    e++ ++    ++kke  G+Gl  +++i++++ g+++++ 
   CCG91827.1 474 LNLILNAIQAMGEGGMLEIIADIQHDDAEPYLAIRVKDTGSGmtqaEIEDIFvpFLTRKKEGTGLGLAIVQKIMENHRGKVEVHS 558
                  589999999999988434444455555556699999999777544444555544447899********************99865 PP

>> CHASE3  CHASE3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2     0.001       1.9      65     107 ..     144     187 ..     137     198 .. 0.80
   2 ?   -2.6   0.2       2.6   4.7e+03      72      92 ..     324     344 ..     314     357 .. 0.51
   3 ?    6.3   0.0    0.0049       8.7      51      95 ..     375     419 ..     366     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.001
      CHASE3  65 npeqqerldrlealieqklaeleetialrre.ggleaalalvrs 107
                  p++ ++l+++ + ++q+l+++ e  +lr++ ++l +  ++ r+
  CCG91827.1 144 KPQHEKQLETIASEAAQWLSYAWEIDKLRQQaKQLSTLIEIGRT 187
                 699********************999999993344465666555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.6
      CHASE3  72 ldrlealieqklaeleetial 92 
                 l++l+a + +k  +le+ ++ 
  CCG91827.1 324 LADLSAVALAKARLLERIVQT 344
                 444444444444444444333 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0049
      CHASE3  51 iqealeelreltadnpeqqerldrlealieqklaeleetialrre 95 
                 i   l +l+  ++++p+ q++l++le+ + q   ++++++   r+
  CCG91827.1 375 IHMLLHSLKMRIKEDPVSQRDLEVLEKKMSQLNRIVDQVLVIGRS 419
                 5667999**********************9999999988877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4094.87
//
Query:       CCG91828.1  [L=920]
Description: UTP:GlnB (Protein PII) uridylyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-23   81.9   0.7    1.5e-22   80.3   0.7    1.8  1  GlnD_UR_UTase  GlnD PII-uridylyltransferase
    5.9e-06   25.9   0.0    1.5e-05   24.5   0.0    1.7  1  GlnE           Glutamate-ammonia ligase adenylyltransferase
      6e-06   25.9   0.3      0.062   13.1   0.0    2.9  2  ACT            ACT domain
      7e-05   23.0   2.5    0.00013   22.2   0.0    2.8  3  NTP_transf_2   Nucleotidyltransferase domain
    7.2e-05   23.0   1.0    0.00062   20.0   0.5    2.9  2  HD             HD domain
    0.00067   19.5   0.0     0.0042   16.9   0.0    2.3  2  DUF294         Putative nucleotidyltransferase DUF294
    0.00079   20.0   0.5        1.4    9.6   0.1    3.3  3  ACT_4          ACT domain
  ------ inclusion threshold ------
      0.072   12.5   0.1         13    5.1   0.0    2.2  2  DUF4419        Domain of unknown function (DUF4419)
       0.13   12.4   0.9        0.9    9.7   0.0    2.9  3  Polbeta        Polymerase beta, Nucleotidyltransferase


Domain annotation for each model (and alignments):
>> GlnD_UR_UTase  GlnD PII-uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.7   7.3e-26   1.5e-22       2     138 ..     212     343 ..     211     350 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 7.3e-26
  GlnD_UR_UTase   2 fmkakieeekarrgrsd.t..llepniKlGpGGlRdiefivqvlqlirGgrdpelrerstlealeelvergllteeeakelreayrflrrlehrLq 94 
                    f++ ++e+ k+++++++ t  + epniK G GGlRd++ +++++++             ++++ e++v  ++++ ++ ++l++ay+fl r++  L+
     CCG91828.1 212 FIEWRLEDLKEQHRKYGaTvlVQEPNIKWGCGGLRDYQSLFWIARVKE-----------KITQREQIVSEKWMEVKDLEKLENAYDFLLRVREKLH 296
                    7888999**********999999*************************...........************************************* PP

  GlnD_UR_UTase  95 lladrqthrLpfdeeeqrrlaealgy.redkaa....fmkelfqhaerV 138
                    +l++r+ + L+     q ++a+algy ++d  a    fm++++ ha ++
     CCG91828.1 297 FLEKRKFDLLTLG--SQGKIATALGYpQKDILArveeFMRHFYDHALQI 343
                    *************..***********86666667888********9887 PP

>> GlnE  Glutamate-ammonia ligase adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   7.6e-09   1.5e-05      88     163 ..      68     137 ..      11     148 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 7.6e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSCCCCTTCC-SEEEEE-HHHHTT---TT--EEEEEEE---TT-BSS CS
        GlnE  88 evsraLseLaeavieaaldlllrqvvaelgtpvdekgepqqllvlGmGklGgaELnysSDiDliflydedaetegg 163
                 ++ r+ +eL   ++  + +++l+q+ + +++     +e   +++++ G  G  EL  +SDiDl+flyd+++ +e++
  CCG91828.1  68 SIARRRAELFMVILTHMWEMALEQLFSPMAF-----EE-PSVALVAVGGFGRKELSPASDIDLLFLYDPQKGAEDV 137
                 5555555666666666666666666655433.....33.489*****************************99876 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   0.00033      0.65       7      52 ..     741     784 ..     737     788 .. 0.87
   2 !   13.1   0.0   3.1e-05     0.062       2      50 ..     849     894 ..     848     912 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00033
                 EE.SSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEH CS
         ACT   7 vp.DrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvde 52 
                 v  Dr G+++r++g ++ +g++i  + +++  d   giv  v++v++
  CCG91828.1 741 VTwDRLGVFSRICGSFSVLGLSILTADIHTRND---GIVLDVFKVCT 784
                 5559*****************************...78888888775 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.1e-05
                 EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEE CS
         ACT   2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivv 50 
                 +l +  pD+P lL r+++al ++gi i+s+ +++ +       +++ v 
  CCG91828.1 849 ILDIQTPDKPALLYRISNALLELGIEIVSARIATEKG---AALDTFYVL 894
                 677899****************************997...444444444 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       2.3   4.6e+03      55      77 ..      23      45 ..      14      57 .. 0.60
   2 !   22.2   0.0   6.6e-08   0.00013       8      62 ..      96     148 ..      89     203 .. 0.76
   3 ?   -3.2   0.2       5.3   1.1e+04      63      86 ..     279     302 ..     258     305 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.3
                  HHHHHCCCEEECTTEEEEEECEE CS
  NTP_transf_2 55 klaeiikfleellglevdlvtre 77
                   l+ei+k+l + ++ + dlv+++
    CCG91828.1 23 SLKEIEKELIQSKKKPKDLVLFY 45
                  45556666666666666666444 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 6.6e-08
                   HHHHTTTSEEEEEHHHHCTTSCTTSSEEEEEEESTTCHHHHHHEHHHHHHHHCCC CS
  NTP_transf_2   8 lkelepvakvvlfGSyarGtalkgSDiDllvvlpeevsrekkeegleklaeiikf 62 
                   + ++ep++ +v++G + r ++ + SDiDll +++  +  e  +++ e +++i +f
    CCG91828.1  96 MAFEEPSVALVAVGGFGRKELSPASDIDLLFLYDPQKGAE--DVIYELIHKILYF 148
                   56778899****************************8865..3334444444444 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.3
                   EEECTTEEEEEECEEECCCCTEEE CS
  NTP_transf_2  63 leellglevdlvtrekledpllvk 86 
                   +++ +++   l++rekl++++++k
    CCG91828.1 279 EKLENAYDFLLRVREKLHFLEKRK 302
                   222234444445888888755554 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.6   3.2e+03      39      72 ..     206     237 ..     204     269 .. 0.73
   2 !   20.0   0.5   3.1e-07   0.00062      21     114 ..     511     595 ..     487     617 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.6
                 HHHHTS..HHHHHH.CTCCHHHHHHHHHHHHHHHH CS
          HD  39 kgpfgdafekkeee.fekflaHekvgaeilrevek 72 
                 +g++ +++e   e+ +e    H k+ga++l ++++
  CCG91828.1 206 HGKEKEFIEWRLEDlKE---QHRKYGATVLVQEPN 237
                 55555555555322244...599999999988865 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 3.1e-07
                 H......HHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHTTCCHHHHHHHHHHHHCCTSCHHH CS
          HD  21 e......eedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld...ledvaklirehheswegkkrprglaerqlslea 110
                 +        ++ +l+la LlHD+G   +++            + He+ +a  + ++ krl+l+   l+d++ l+ +h+ +  ++ r+      +l  e+
  CCG91828.1 511 FaslfhqLQNPFILYLAILLHDTGRAANRR------------KHHEELSAVNAMNAAKRLRLSaeeLSDLVFLVDQHLLMGQIAVRR------NLEDEE 591
                 144444445999***************887............57****************999999999*********999988444......444444 PP

                 HHHH CS
          HD 111 rivk 114
                  i++
  CCG91828.1 592 TILD 595
                 4433 PP

>> DUF294  Putative nucleotidyltransferase DUF294
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.1e-06    0.0042      14      90 ..      63     141 ..      52     159 .. 0.82
   2 ?   -1.9   0.0       1.3   2.7e+03      46      59 ..     299     312 ..     282     322 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.1e-06
      DUF294  14 gvkaealarlvselndallrrlielaeeelgk....ppvpfallvmGSeGReEqtlktDqDnalvledeeeeaareyfael 90 
                 g++ + +ar  +el   +l++++e+a+e+l +    ++ ++al+++G  GR+E   ++D D  ++++   ++ a++ + el
  CCG91828.1  63 GASGKSIARRRAELFMVILTHMWEMALEQLFSpmafEEPSVALVAVGGFGRKELSPASDIDLLFLYDP--QKGAEDVIYEL 141
                 6777889999999999*************99978777889**************************99..44444444455 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
      DUF294  46 ppvpfallvmGSeG 59 
                 ++++f ll++GS+G
  CCG91828.1 299 EKRKFDLLTLGSQG 312
                 688999*******9 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.9   1.2e+04      55      69 ..     274     288 ..     273     292 .. 0.76
   2 !    6.9   0.0    0.0047       9.5      11      54 ..     740     782 ..     736     789 .. 0.85
   3 !    9.6   0.1   0.00069       1.4       9      43 ..     850     884 ..     844     920 .] 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.9
       ACT_4  55 eVkdvehLsrviakL 69 
                 eVkd+e+L++  + L
  CCG91828.1 274 EVKDLEKLENAYDFL 288
                 8*******9876655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0047
       ACT_4  11 veaedrkglLaditqviseekanivsvnaktrkkdglaeikitv 54 
                 ++++dr g++++i+  +s  + +i    ++tr+ dg++   ++v
  CCG91828.1 740 IVTWDRLGVFSRICGSFSVLGLSILTADIHTRN-DGIVLDVFKV 782
                 889****************************96.9887655555 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00069
       ACT_4   9 leveaedrkglLaditqviseekanivsvnaktrk 43 
                 l++++ d++ lL +i++++ e ++ ivs ++ t+k
  CCG91828.1 850 LDIQTPDKPALLYRISNALLELGIEIVSARIATEK 884
                 7899***************************9976 PP

>> DUF4419  Domain of unknown function (DUF4419)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0064        13     151     194 ..      11      52 ..       4      65 .. 0.85
   2 ?    5.1   0.0    0.0067        13     197     301 ..     618     728 ..     611     728 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0064
     DUF4419 151 kefgeelkewaklLrpildrfvesfdepdseenkeFWnkivkee 194
                 k+ +++++++ k L++i +++++s ++p++   + F+++++k+e
  CCG91828.1  11 KSCKSKMSSFDKSLKEIEKELIQSKKKPKDL--VLFYKNFLKKE 52 
                 667899********************99966..99999998766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0067
     DUF4419 197 egsgese.lsGWitaFcv..ydkdgkvleeekkeeeeeeseeeealvldgveype.idtddipsglasvpvkl.de.dng.keyelelvaGsvGvkvss 288
                 eg ges+  + W + +++  y+++ ++l+++++   e++++ e+ ++  ++++++ id +++ +++ ++p+++ ++ +++  ++++el+  ++  +++s
  CCG91828.1 618 EGTGESKnWTSWKNLLLWelYHQTSRALANREEFIFERRKSIEQIKEKTKARLSSrIDEEEVEAHFNNLPLRYfQTfSEEaISIHIELIHRFFMNQIDS 716
                 45555555666644443333555555555555555444444444444455555555****************97666555699**************99 PP

     DUF4419 289 eeedtlqpvsgWa 301
                 ++ ++l pv++W+
  CCG91828.1 717 SS-NVLAPVVKWI 728
                 98.9********5 PP

>> Polbeta  Polymerase beta, Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00045       0.9      15      47 ..     105     136 ..      95     159 .. 0.75
   2 ?   -2.7   0.0       3.2   6.3e+03      45      70 ..     285     309 ..     275     314 .. 0.71
   3 ?   -2.6   0.1       3.1   6.2e+03      48      74 ..     796     823 ..     773     832 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00045
                 STTEEEEEE-S------EEEEEEEESS---HHH CS
     Polbeta  15 laylFGSrakgkareeSDiDlavllkekldlee 47 
                 l +  G + ++++ + SDiDl +l++ ++  e+
  CCG91828.1 105 L-VAVGGFGRKELSPASDIDLLFLYDPQKGAED 136
                 3.34488999****************9954444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.2
                 HHHHHHHHHHHHHH.SSSEEEEEETT CS
     Polbeta  45 leeelelaaelediklgkkvDlvdln 70 
                 ++  l++ ++l+ + +++k+Dl++l 
  CCG91828.1 285 YDFLLRVREKLHFL-EKRKFDLLTLG 309
                 45566777788888.78999998875 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.1
                 HHHHHHHHHHH.SSSEEEEEE.TTTS-H CS
     Polbeta  48 elelaaelediklgkkvDlvd.lneapp 74 
                 +  + + le++++++++D+ + l ++++
  CCG91828.1 796 KNAFCKILEKAFISESFDITEqLAKNKT 823
                 2233333444477788888774444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.51
# Mc/sec: 5472.13
//
Query:       CCG91829.1  [L=247]
Description: Pyridoxine 5'-phosphate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-92  308.4   2.6    2.6e-92  308.2   2.6    1.0  1  PdxJ      Pyridoxal phosphate biosynthesis protein PdxJ


Domain annotation for each model (and alignments):
>> PdxJ  Pyridoxal phosphate biosynthesis protein PdxJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.2   2.6   1.5e-96   2.6e-92       1     234 []       3     243 ..       3     243 .. 0.97

  Alignments for each domain:
  == domain 1  score: 308.2 bits;  conditional E-value: 1.5e-96
                 EEEEE-HHHHHHHHCC.......SSS-S-HHHHHHHHHCCT.SEEEEE--TT-SSS-HHHHHHHHHH-SSEEEEEEESSHHHHHHHHHH--SEEEEE-- CS
        PdxJ   1 kLgVnidhvAtlRnar.......ggnePdvveaaelaeeaGAdgitvhlreDrRhiqdeDveelkelvktelnlEmalteemleialelkpeqvtLVPe 92 
                 +Lg+nidhvAtlR+ar        + eP+++eaa++a+++GA++it+hlreDrRhiq eD++ +++ vk +ln+Ema+ +em++iale+kp++v+LVPe
  CCG91829.1   3 QLGLNIDHVATLRQARykqnpfsFNAEPSPLEAAKIAQNVGAHSITAHLREDRRHIQLEDMQLIRSAVK-HLNMEMAPISEMVKIALEIKPDEVCLVPE 100
                 69**************88777755679**************************************9996.8**************************** PP

                 SCCCCSTTSSB-TGGCHCCHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHCT-SEEEEETHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT-EEEEETT- CS
        PdxJ  93 kreelttegGldvakeeeklkevikelkeagirvslFidpdkeqieaaaelgadvvELhtgaYaeaaeeeereeelerlkeaaklakelgLevnaGHgL 191
                 kree+ttegGldv+++  ++++v++el++a+i vslFidpd++qi+aa+++ga+++ELhtg+Ya a++ e  e+e+e+ k++a la+el L+vnaGHgL
  CCG91829.1 101 KREEVTTEGGLDVVSHLPSIRKVVSELSQANIIVSLFIDPDPDQIKAAKQTGAHCIELHTGQYAMATDLEIIEKEIEKHKQCALLAHELHLQVNAGHGL 199
                 *******************************************************************99999*************************** PP

                 -TTTCHH.HHTSTTEEEEEE-HHHHHHHHHH-HHHHHHHHHHHC CS
        PdxJ 192 nyenvka.iakipeieelnIGhaliaealfvGleeavremkeli 234
                 ny+nv++ i+++p ++ lnIGha+i+ a+f+Gle+a ++m++li
  CCG91829.1 200 NYKNVSPyIRSVPFLHTLNIGHAIISAAIFLGLENALKKMLSLI 243
                 ****************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1799.38
//
Query:       CCG91830.1  [L=123]
Description: Holo-(acyl-carrier-protein) synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-17   64.3   0.0    1.1e-17   64.2   0.0    1.1  1  ACPS      4'-phosphopantetheinyl transferase superfamily
  ------ inclusion threshold ------
        0.1   12.8   1.7        3.7    7.8   1.7    2.2  1  4PPT_N    4'-phosphopantetheinyl transferase N-terminal domai


Domain annotation for each model (and alignments):
>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   1.2e-21   1.1e-17       2     101 ..       6     100 ..       5     119 .. 0.89

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 1.2e-21
                 EEEEEEEHHHHH.HHH-----HHHHHS-HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTS-SSSS--GGG-EEEE-TTS-EEEE-S-SSEEEEEEE CS
        ACPS   2 vGiDieklsrlrkrvkrrgakilkrifteeErkllkssdeearaelfarlWaaKEAllKalgpglrklldfksievledstgrptlellseakkkawkl 100
                 vGiD+++ sr+++ ++r+g+++lk+i+ e E++++ s+ ++ +  ++++++aaKEA++Kalg  +     +k+iev  +++++p+l +++e  k + + 
  CCG91830.1   6 VGIDLVENSRIESVLNRFGDRFLKKIYRETELAYCFSMTNPIP--HLSARFAAKEAVIKALGSPI---AYWKDIEVFSKKNRAPQLFFHGEVLKLSSSR 99 
                 9************************************999999..9*******************...7777777788888******999988776555 PP

                 E CS
        ACPS 101 e 101
                 +
  CCG91830.1 100 G 100
                 5 PP

>> 4PPT_N  4'-phosphopantetheinyl transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.7   0.00041       3.7      19      67 ..      51     119 ..      47     120 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00041
      4PPT_N  19 aGRicAraa.larlgle.....avpllsgerraPlwp..............aglvgSIsHtdglaaAav 67 
                 ++R++A++a +++lg +     + ++ s+++raP++               + ++ S+sH++++ aA+v
  CCG91830.1  51 SARFAAKEAvIKALGSPiaywkDIEVFSKKNRAPQLFfhgevlklsssrgvSSTYISLSHCRSTSAAVV 119
                 667777766235555432222245666677777765444444444444222334569999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 831.89
//
Query:       CCG91831.1  [L=110]
Description: hypothetical protein MFUM_230010 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       943  (0.0525964); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 731.63
//
Query:       CCG91832.1  [L=309]
Description: Transcriptional regulator containing HTH domain,AraC family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-22   77.6   0.0    1.5e-21   76.4   0.0    1.6  1  HTH_18       Helix-turn-helix domain
    8.5e-16   57.6   0.2    6.4e-08   32.5   0.0    2.6  2  HTH_AraC     Bacterial regulatory helix-turn-helix proteins, 
    0.00038   20.4   0.1     0.0023   18.0   0.0    2.3  2  HTH_3        Helix-turn-helix
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.026   14.4   0.0    1.7  1  MarR_2       MarR family
      0.016   15.4   0.1       0.29   11.4   0.0    2.9  2  HTH_17       Helix-turn-helix domain
      0.036   14.2   0.0       0.11   12.6   0.0    1.9  1  AbiEi_4      Transcriptional regulator, AbiEi antitoxin
      0.042   13.6   0.0        2.7    7.8   0.0    2.7  2  Nsp3_PL2pro  Coronavirus polyprotein cleavage domain
      0.057   13.4   0.0       0.11   12.5   0.0    1.5  1  HTH_Crp_2    Crp-like helix-turn-helix domain
      0.064   13.6   3.3       0.11   12.8   0.0    3.0  5  HTH_31       Helix-turn-helix domain
       0.12   12.2   0.0        1.9    8.4   0.0    3.0  4  HTH_5        Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   8.4e-25   1.5e-21       1      75 [.     224     297 ..     224     301 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 8.4e-25
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-H CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetP 75 
                 la+ lgvs+++L+rlf +++g++   y+r+lR+e+A +lL ++ + +v+e+A+a+G+s+ls+Fs+ f +++g++P
  CCG91832.1 224 LARYLGVSPSYLSRLFSKETGMSIPVYVRNLRIEKAAELL-KRGDYNVTEAAFAVGYSSLSYFSKVFCQVMGCCP 297
                 89************************************99.56*******************************9 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   3.6e-11   6.4e-08       1      37 [.     211     247 ..     211     248 .. 0.97
   2 !   22.5   0.0     5e-08   8.9e-05       8      37 ..     267     297 ..     263     300 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.6e-11
                 HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-H CS
    HTH_AraC   1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtP 37 
                 L+e++++ +++ ++A  lg+S+sy+srlF+ketGm++
  CCG91832.1 211 LKEHFTSAIRLSELARYLGVSPSYLSRLFSKETGMSI 247
                 89*********************************95 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 5e-08
                 T--HHHHHHHTTS.SHHHHHHHHHHHSSS-H CS
    HTH_AraC   8 nltiediAdelgf.SrsyFsrlFkketGmtP 37 
                 + ++++ A ++g+ S syFs++F +++G+ P
  CCG91832.1 267 DYNVTEAAFAVGYsSLSYFSKVFCQVMGCCP 297
                 689*************************855 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.3e-06    0.0023      12      34 ..     221     243 ..     216     250 .. 0.88
   2 ?   -2.3   0.0       2.7   4.8e+03       3      20 ..     261     278 ..     252     283 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHTSSHHHHHHHHTTSS CS
       HTH_3  12 qeeLAeklGvsrstisriEnGer 34 
                 + eLA++lGvs+s++sr+++ e+
  CCG91832.1 221 LSELARYLGVSPSYLSRLFSKET 243
                 579***************99765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.7
                 HHHHHTTHHHHHHHHHHT CS
       HTH_3   3 elRkqlglsqeeLAeklG 20 
                 el+k  ++  +e+A ++G
  CCG91832.1 261 ELLKRGDYNVTEAAFAVG 278
                 455555556666666666 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.5e-05     0.026      22      41 ..     219     238 ..     205     241 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
                 EEHHHHHHHHTSSHHHHHHH CS
      MarR_2  22 ltvgelarrlglsksavsri 41 
                 ++ +elar+lg+s+s++sr+
  CCG91832.1 219 IRLSELARYLGVSPSYLSRL 238
                 6889***************7 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.29       5      24 ..     222     241 ..     219     260 .. 0.73
   2 ?    1.2   0.0      0.24   4.3e+02       2      12 ..     254     264 ..     253     270 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
      HTH_17   5 eEaAelLgvsrstvyrlirr 24 
                 +E+A++Lgvs+s + rl ++
  CCG91832.1 222 SELARYLGVSPSYLSRLFSK 241
                 79**************9864 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.24
      HTH_17   2 ltveEaAelLg 12 
                 l +e aAelL+
  CCG91832.1 254 LRIEKAAELLK 264
                 789*******8 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.4e-05      0.11      14      32 ..     219     238 ..     207     241 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.4e-05
     AbiEi_4  14 fttrelea.aGispsalrrL 32 
                 ++ +el++ +G+sps+l+rL
  CCG91832.1 219 IRLSELARyLGVSPSYLSRL 238
                 899****************9 PP

>> Nsp3_PL2pro  Coronavirus polyprotein cleavage domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0015       2.7      12      49 ..      40      75 ..      32      79 .. 0.83
   2 ?    2.6   0.0     0.066   1.2e+02      24      39 ..     255     270 ..     250     275 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0015
                 HTEETTEE----EETTEEEEEEETTEEEEE-SSSS--E CS
  Nsp3_PL2pro 12 aGsyrdwsysGqrtelGveflkrGdkivyhtlespvef 49
                  Gs+ dws s  r  l +   k G  ivy   ++ vef
   CCG91832.1 40 DGSF-DWSRSFHRNSLEICINKLGSGIVYSE-KAQVEF 75
                 5665.9***********************64.455666 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.066
                  EETTEEEEEEETTEEE CS
  Nsp3_PL2pro  24 rtelGveflkrGdkiv 39 
                  r e   e+lkrGd  v
   CCG91832.1 255 RIEKAAELLKRGDYNV 270
                  788999*******765 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.1e-05      0.11      17      44 ..     214     241 ..     199     265 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.1e-05
                 EEEEEHHHHHHHHHTTSSHHHHHHHHHH CS
   HTH_Crp_2  17 eielpltqeelAsmlGltretvsrilse 44 
                 +++  +   elA++lG++++ +sr++s+
  CCG91832.1 214 HFTSAIRLSELARYLGVSPSYLSRLFSK 241
                 566777889****************997 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.4   1.1e+04      32      40 ..       4      12 ..       3      22 .. 0.66
   2 ?   -0.9   0.0       1.2   2.1e+03       9      24 ..      90     116 ..      88     136 .. 0.77
   3 ?   -3.0   0.1       5.6     1e+04      14      22 ..     173     181 ..     160     183 .. 0.73
   4 ?   12.8   0.0   6.3e-05      0.11      16      45 ..     220     248 ..     216     273 .. 0.81
   5 ?   -1.4   0.0       1.7   3.1e+03      15      25 ..     254     264 ..     250     288 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.4
      HTH_31 32 srlEqGrrg 40
                 ++E+G++ 
  CCG91832.1  4 AKVERGAWK 12
                688999885 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.2
      HTH_31   9 lRera...........GLsqeevAerl 24 
                 lR+++            +s+ ++A+ l
  CCG91832.1  90 LRAERiggeyaqfvtvEWSRSALAQEL 116
                 666666666666666678899988876 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.6
      HTH_31  14 GLsqeevAe 22 
                  Ls+e++Ae
  CCG91832.1 173 ALSLEAAAE 181
                 567777776 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 6.3e-05
      HTH_31  16 sqeevAerlgvsestlsrlEqGrrgrpspa 45 
                 ++ e+A+ lgvs+s+lsrl + + g +s  
  CCG91832.1 220 RLSELARYLGVSPSYLSRLFSKETG-MSIP 248
                 789****************998876.6655 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 1.7
      HTH_31  15 LsqeevAerlg 25 
                 L+ e +Ae+l 
  CCG91832.1 254 LRIEKAAELLK 264
                 56666666654 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.5   8.1e+03      27      41 ..     107     121 ..     105     121 .. 0.76
   2 ?   -2.6   0.0       2.9   5.1e+03       3       9 ..     152     158 ..     151     159 .. 0.80
   3 ?    8.4   0.0    0.0011       1.9      19      34 ..     222     237 ..     219     241 .. 0.90
   4 ?   -1.1   0.0      0.98   1.8e+03      10      28 ..     262     280 ..     261     281 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.5
                 S-HHHHHHHHHHHHH CS
       HTH_5  27 lsqstvShHLkkLre 41 
                  s+s++ + Lk L+e
  CCG91832.1 107 WSRSALAQELKGLEE 121
                 588999888888875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.9
                 HHHHHHH CS
       HTH_5   3 tRlkILk 9  
                  Rl+IL 
  CCG91832.1 152 SRLEILL 158
                 79***97 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0011
                 HHHHHHHTS-HHHHHH CS
       HTH_5  19 celaeelglsqstvSh 34 
                 +ela++lg+s+s +S+
  CCG91832.1 222 SELARYLGVSPSYLSR 237
                 8***********9997 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.98
                 HHTTSSEEHHHHHHHHTS- CS
       HTH_5  10 lLaegelcvcelaeelgls 28 
                 lL +g + v+e a ++g s
  CCG91832.1 262 LLKRGDYNVTEAAFAVGYS 280
                 7889*******99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2049.90
//
Query:       CCG91833.1  [L=251]
Description: regulator of kdp operon (transcriptional effector) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-30  104.3   0.2    6.2e-30  103.7   0.2    1.3  1  Response_reg  Response regulator receiver domain
    1.4e-21   76.3   0.6    1.4e-21   76.3   0.6    1.6  2  Trans_reg_C   Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
       0.11   12.6   0.1       0.79    9.8   0.1    2.3  3  HydF_dimer    Hydrogen maturase F dimerization domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   0.2     1e-33   6.2e-30       1     111 [.      22     130 ..      22     131 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 1e-33
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl++dD+p +++llr +le++gy +v +a++g+e +  + ++++dli+lD+ +p+++G+ ++++ire + ++p+++l+a ++e+++v+al+ gadd+
    CCG91833.1  22 VLVIDDEPQMLKLLRLILEKKGY-RVYVAAKGEEGILEAAQRRPDLIILDLLLPDISGIAVIQRIREWS-QIPILVLSAVDQEKEKVQALDSGADDY 116
                   89*********************.*******************************************88.*************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l+Kpf  eeL++++
    CCG91833.1 117 LTKPFGDEELMARM 130
                   **********9986 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.5   9.3e+03      12      22 ..      33      43 ..      28      46 .. 0.57
   2 !   76.3   0.6   2.4e-25   1.4e-21       2      77 .]     165     240 ..     164     240 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.5
                 HHHHHHHHTTT CS
  Trans_reg_C 12 klLelLlenpg 22
                 klL+l le++g
   CCG91833.1 33 KLLRLILEKKG 43
                 56666655554 PP

  == domain 2  score: 76.3 bits;  conditional E-value: 2.4e-25
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  +e++lt++e+++L+lL++++g+v+++ ++l+e+wg ++  + + ++v+++rLR+k+e+++ +p+l+ t +g+GYrl
   CCG91833.1 165 KEIHLTATEYSILRLLVRHAGKVLTHRQILQEIWGPHSVEQVHYLRVYMARLREKIEENSMQPKLLLTEPGIGYRL 240
                  78************************************************************************97 PP

>> HydF_dimer  Hydrogen maturase F dimerization domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00013      0.79      30      70 ..      29      70 ..      11      76 .. 0.80
   2 ?   -2.9   0.0       1.2   7.2e+03      83      93 ..     165     177 ..     147     185 .. 0.60
   3 ?   -1.0   0.0      0.31   1.9e+03      47      71 ..     210     234 ..     185     248 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00013
  HydF_dimer 30 pqv.qviRdilDekaiavvvkeseleaalkslkrkpklvitD 70
                pq  +++R il++k + v v  +  e +l+  +r+p+l+i D
  CCG91833.1 29 PQMlKLLRLILEKKGYRVYVAAKGEEGILEAAQRRPDLIILD 70
                4432578*********************************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.2
  HydF_dimer  83 kdvkl..ttfsil 93 
                 k+++l  t +sil
  CCG91833.1 165 KEIHLtaTEYSIL 177
                 4555511457775 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.31
  HydF_dimer  47 vvkeseleaalkslkrkpklvitDs 71 
                  v  + l + +++ + +pkl++t+ 
  CCG91833.1 210 RVYMARLREKIEENSMQPKLLLTEP 234
                 3555677778888888888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2022.72
//
Query:       CCG91834.1  [L=903]
Description: Osmosensitive K+ channel histidine kinase KdpD [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-90  302.3   0.2    2.4e-90  301.6   0.2    1.4  1  KdpD         Osmosensitive K+ channel His kinase sensor domai
    1.4e-23   82.7   5.6    2.4e-23   82.0   5.6    1.4  1  DUF4118      Domain of unknown function (DUF4118)
    9.3e-22   77.7   0.0    2.6e-21   76.2   0.0    1.8  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.2e-16   61.3   0.0    2.6e-16   60.2   0.0    1.6  1  GAF_3        GAF domain
    2.3e-13   49.9   0.9      1e-12   47.9   0.6    2.4  2  HisKA        His Kinase A (phospho-acceptor) domain
    1.8e-06   28.5   0.9      3e-05   24.6   0.1    3.0  2  Usp          Universal stress protein family
    1.4e-05   25.0   0.0    4.2e-05   23.5   0.0    1.7  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.041   13.6   0.0    2.0  2  AAA_30       AAA domain
      0.032   14.1   0.0      0.092   12.7   0.0    1.8  2  HATPase_c_5  GHKL domain
      0.046   13.7   0.1          4    7.4   0.0    2.8  3  ResIII       Type III restriction enzyme, res subunit
      0.093   12.8   0.1        6.8    6.8   0.0    2.6  2  OSCP         ATP synthase delta (OSCP) subunit
        1.5    9.0   2.7        2.7    8.1   2.7    1.3  1  DHHC         DHHC palmitoyltransferase
        8.8    6.5   7.7        4.3    7.5   1.9    2.9  2  CcmD         Heme exporter protein D (CcmD)


Domain annotation for each model (and alignments):
>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.6   0.2   1.8e-93   2.4e-90       1     209 [.      26     233 ..      26     234 .. 0.99

  Alignments for each domain:
  == domain 1  score: 301.6 bits;  conditional E-value: 1.8e-93
        KdpD   1 krGrlkiflGaapGvGktyamLeeaqelkeegvdvviglvethgrketeallegleviprkeveykgkeleeldldailarkpevvlvDelahtnapgs 99 
                 +rG+lkiflG++pGvGktyamL++aq + ++g+dvvig+vethgr+ete+l++g+++iprk v+y++  lee+dldail+rkp++v+vDelahtnapg+
  CCG91834.1  26 RRGSLKIFLGMCPGVGKTYAMLQAAQVELNNGKDVVIGFVETHGRRETEQLTKGIPIIPRKIVHYRDILLEEMDLDAILKRKPQLVIVDELAHTNAPGM 124
                 59************************************************************************************************* PP

        KdpD 100 rhekryqdveelLeagidVittvnvqhleslndvvekitgvrvretvPdevleeAdevelvDltpeeLlerLkegkvykkekaeralknffrkgnLtaL 198
                 rh kryqdv e+L+agidV+tt+nvqh+es +d++++itg  + e+vPd+++++A e+elvDl+pe+Ll+rL+egkvy +e+a++a+ nff++gnL aL
  CCG91834.1 125 RHLKRYQDVLEILDAGIDVFTTLNVQHIESRTDMISQITGAPIYEKVPDSIVDMA-EIELVDLSPEDLLKRLAEGKVYIPEQARAAALNFFKEGNLRAL 222
                 ******************************************************9.8****************************************** PP

        KdpD 199 RelaLrrvAdr 209
                 Re++Lr +A++
  CCG91834.1 223 REIVLRLAAEK 233
                 ******99986 PP

>> DUF4118  Domain of unknown function (DUF4118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   5.6   1.7e-26   2.4e-23       1     107 []     402     508 ..     402     508 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 1.7e-26
     DUF4118   1 yllavlllalatllallldkllslanivllfllavllvallgglgpgllaallsvllfnyfftpPyftltiadpeylltlvvflvvallvstlvararr 99 
                 y+++ l+++++tll+l+l+++++ ++i +++ll+++++al+ g+gp ++aa+ls+++++y+f++P+f + i+  e+ + +++++vval+ ++++ar+r 
  CCG91834.1 402 YGITSLVILAITLLCLWLNQWIGSRSIGMIYLLGIVIIALFVGRGPVIVAAFLSAIIWDYVFLSPRFVIGIQGIENGFVVFTYFVVALVLGQFIARLRA 500
                 78999****************99**************************************************************************** PP

     DUF4118 100 qarqarer 107
                 q++++r+r
  CCG91834.1 501 QEKAERRR 508
                 ****9997 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0   1.9e-24   2.6e-21       8     111 ..     785     886 ..     779     887 .. 0.92

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 1.9e-24
                 HHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEE CS
   HATPase_c   8 qiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftf 106
                 ++++nl+ Na+ +++ ++ +e++++++++ lvi+v D G+Gi++e+l ++fekf++  +t    ggtGlGlsivk +v+ +gG+++v+++p++G  f +
  CCG91834.1 785 EALNNLLLNAAIHTPAGSPVELNVSVKKNALVIQVADRGPGIDPEILSRIFEKFYR--GTGAPPGGTGLGLSIVKGVVDAHGGKVQVQNRPEGGAVFSI 881
                 6899*********7788888888888799***************************..6666779********************************** PP

                 EEESS CS
   HATPase_c 107 tlple 111
                  lple
  CCG91834.1 882 ILPLE 886
                 ***98 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   1.9e-19   2.6e-16       2     129 .]     528     647 ..     527     647 .. 0.90

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 1.9e-19
       GAF_3   2 ldellekllkllvkllgaevgalllldedgnklqvaagwdgkpalsesldedsalarralssgevvsepsfaeedglpdraalavPLvagrqviGvlal 100
                 lde++ k++++l ++++aev a++l++++ nkl    +w  +  l ++ +++  +a +a+++g ++    ++ +++lp+++a++vPL+++ + +Gvl++
  CCG91834.1 528 LDEIVIKVIEQLTHVFQAEV-AVFLVNPYNNKLSGLPHW--ASTL-KVTEKEAGVANWAFEHGKAA----GRFTENLPLSKAYYVPLTTHKGCVGVLGI 618
                 79******************.888***************..5555.35667888888888888754....566889*************88******** PP

       GAF_3 101 astkprafdaedlelleslArqiataier 129
                 + ++ ++++ ++++l++++A+qia+ i+r
  CCG91834.1 619 NIPGIQSLSFDQKSLIQAFANQIALVIDR 647
                 ***************************97 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.1     7e+03      19      39 ..      60      78 ..      53     100 .. 0.72
   2 !   47.9   0.6   7.5e-16     1e-12       3      67 .]     668     734 ..     666     734 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.1
                HHHHHHHHHHC..T-HSSCHH CS
       HisKA 19 ailgnaeaLkregklteelke 39
                +++g++e+  r  + te+l +
  CCG91834.1 60 VVIGFVETHGR--RETEQLTK 78
                68999999977..56777765 PP

  == domain 2  score: 47.9 bits;  conditional E-value: 7.5e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC......T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkre....gklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 + +l +++HE+rtPL++i +++e L++e       + +++ +le i+s + rl++lv +lLd++rie+g
  CCG91834.1 668 RTLLNSISHEMRTPLAVITAAVESLSKEdrwmS--PTDQRILLEEIKSATFRLNRLVRNLLDMARIESG 734
                 57999********************55557654..499999**************************97 PP

>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   2.2e-08     3e-05       3     133 ..     255     369 ..     254     377 .. 0.90
   2 ?   -1.7   0.1       2.8   3.8e+03      21      51 ..     499     530 ..     493     552 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.2e-08
                 SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHH CS
         Usp   3 krIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaee 101
                 +r lVa+  s++s+ +++w  + a++ +++ ++++v  ++  +++++ + +   e +++ +a                 + +++++ d  ++i ++a++
  CCG91834.1 255 HRLLVAISASPSSETLIRWTRRHAESLKCPWYVVYVETSKVLSEEDQQRLSKNIELAKELGA-----------------EIITTTDEDIVRGIFRIAKQ 336
                 589*********************************99999999888888888888888886.................66899*************** PP

                 TTSSEEEEESCCSSTTTT.CSSBHHHHHHHHHT CS
         Usp 102 edadliVvGsrgrsglsr.lllGSvseyvlrha 133
                 +++  +V+G+ + +gl + +   S  ++++r++
  CCG91834.1 337 RNITQVVLGKPRGKGLIEwFKSRSLLHKLVRES 369
                 **********99999999566888999999876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.8
                 HHHHHHHH.CTSEEEEEEEEESSHCCCCCCCH CS
         Usp  21 wAlelaka.rgaelillhvidprasgavsdad 51 
                 +A e a++ r+a++ +l+ ++ + s+a++  +
  CCG91834.1 499 RAQEKAERrREARISALYMLSQELSQAAGLDE 530
                 56666666688888888888888777776655 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     3e-08   4.2e-05      38     112 ..     785     863 ..     781     878 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3e-08
  HATPase_c_2  38 EactNavehayleap.egpvevrlesdeealtvevaDsGpgfdpetlpdpteeep...keslkegGrGlalikglvDev 112
                  Ea++N    a  + p   pve+ ++++++al+++vaD+Gpg dpe l +  e+ +    ++    G+Gl ++kg+vD  
   CCG91834.1 785 EALNNLLLNAAIHTPaGSPVELNVSVKKNALVIQVADRGPGIDPEILSRIFEKFYrgtGAPPGGTGLGLSIVKGVVDAH 863
                  7777777777777777899*************************9887776655577788888899**********975 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     3e-05     0.041      26     109 ..      37     128 ..      25     135 .. 0.73
   2 ?   -3.6   0.0       5.4   7.5e+03      70     124 ..     267     323 ..     255     325 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3e-05
      AAA_30  26 pAGtGKttalkalreaweaaggrvi...glAptgkaAkvLaeelgieastiakllkrlk.....grarlepg.tllivDEagmvdtkqlaall 109
                  +G GKt+a+ +++++  ++g++v+   + ++  +  ++L++++ i  + i ++ + l      + a l+++ +l+ivDE + +++  +++l 
  CCG91834.1  37 CPGVGKTYAMLQAAQVELNNGKDVVigfVETHGRRETEQLTKGIPIIPRKIVHYRDILLeemdlD-AILKRKpQLVIVDELAHTNAPGMRHLK 128
                 49**************99998777643334566788999**999984444443332222355564.5566667**********9999998875 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.4
      AAA_30  70 astiakllkrlkgrarlepg.tllivDEagmv....dtkqlaallkaaekagakvilvGD 124
                 ++t+ ++++r+++  +l+    ++ v E++ v    d++ l + ++ a++ ga++i   D
  CCG91834.1 267 SETLIRWTRRHAE--SLKCPwYVVYV-ETSKVlseeDQQRLSKNIELAKELGAEIITTTD 323
                 5566666666653..33444133333.555555444455555555556666777777666 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       8.5   1.2e+04      39      58 ..     544     563 ..     533     577 .. 0.63
   2 ?   12.7   0.0   6.7e-05     0.092      13      90 ..     786     872 ..     777     884 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 8.5
  HATPase_c_5  39 kksliisieNsyegekkkle 58 
                  +  + + + N+y+++   l+
   CCG91834.1 544 QAEVAVFLVNPYNNKLSGLP 563
                  55677778899998876554 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 6.7e-05
  HATPase_c_5  13 lLdNA.ieacskieeekrfIrltvrekkksliisieNsyeg...ek......kklesskskkeehGiGlksireivkkykgnlsieae 90 
                  +L+N  ++a+ +++ + + ++l+v+ kk++l+i++     g   e+      k ++ +    +  G+Gl+ ++ +v+ ++g++++++ 
   CCG91834.1 786 ALNNLlLNAAIHTP-AGSPVELNVSVKKNALVIQVADRGPGidpEIlsrifeKFYRGTGAPPGGTGLGLSIVKGVVDAHGGKVQVQNR 872
                  44443134566666.4889******************9777555335444635566778899**********************9875 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0029         4      11      53 ..      13      58 ..       6      68 .. 0.72
   2 ?    3.2   0.0     0.057        78     122     157 ..      96     137 ..      55     147 .. 0.68
   3 ?   -3.3   0.0       5.8   8.1e+03      54     114 ..     654     714 ..     640     720 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0029
                HHHHHT......TTS...EEEEEESTTSTHHHHHHHHHHHH-S... CS
      ResIII 11 aienlleklkskrdk...rglikmaTGtGKTlvaaklierllkkgk 53
                a+ +++ek + ++++   ++++ m  G+GKT+ ++++++  l++gk
  CCG91834.1 13 ALLEVVEKEEGEKRRgslKIFLGMCPGVGKTYAMLQAAQVELNNGK 58
                555555555443333556999**************99887666655 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.057
                 .....HHHTTT-S.EEEEETGGGTTS......TTTHHHHHT- CS
      ResIII 122 eeeseellrdrfd.viiiDEaHrlgak.....kswreilekf 157
                 ee++ ++  +r++ ++i+DE  +++a      k ++ +le +
  CCG91834.1  96 EEMDLDAILKRKPqLVIVDELAHTNAPgmrhlKRYQDVLEIL 137
                 55555555555556***********96555555777776655 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5.8
                 ..-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHH CS
      ResIII  54 eekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsl 114
                  e++ +++ ++ l   +l+ +++ + ++ + i+  v++ +k+ +  + t+ +il+++i+s+
  CCG91834.1 654 AEHARVVAESERLSRTLLNSISHEMRTPLAVITAAVESLSKEDRWMSPTDQRILLEEIKSA 714
                 4466677777777777777777777777666666666655555555677778888777765 PP

>> OSCP  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0049       6.8     104     148 ..     287     330 ..     284     339 .. 0.85
   2 ?    3.2   0.0     0.061        84      64      90 ..     632     658 ..     569     695 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0049
        OSCP 104 eaeVtsavpLtdeqlekleaal..akklgkkkvkleekvdpsliGGv 148
                  ++V + + L++e +++l++++  ak lg+   ++ +++d++++ G+
  CCG91834.1 287 VVYVETSKVLSEEDQQRLSKNIelAKELGA---EIITTTDEDIVRGI 330
                 589*****************9955777777...58999999999886 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.061
        OSCP  64 klseavknflkllaenkRlalLpeiae 90 
                 +l +a++n ++l+++++Rla L e a+
  CCG91834.1 632 SLIQAFANQIALVIDRQRLAELAEHAR 658
                 5778999*************9988554 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.7    0.0019       2.7      35     112 ..     415     493 ..     402     504 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0019
        DHHC  35 hCpwlnnciGerNyky.Fllfllylllllilalvlllialvklveeekkseflavtllkkllsilllvlsllfllllgl 112
                  C wln++iG r   + +ll +++++l++    v+   +l+ ++ +  + +   v  ++ + + ++++  ++++l+lg+
  CCG91834.1 415 LCLWLNQWIGSRSIGMiYLLGIVIIALFVGRGPVIVAAFLSAIIWDYVFLSPRFVIGIQGIENGFVVFTYFVVALVLGQ 493
                 6*************65599888888888877666666666666555555555544444443344444444444444443 PP

>> CcmD  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.4      0.44     6e+02      11      27 ..     402     418 ..     402     427 .. 0.70
   2 ?    7.5   1.9    0.0032       4.3      13      42 ..     482     511 ..     480     512 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.44
        CcmD  11 YgitllvlagLilwslr 27 
                 Ygit lv+++  l+ l+
  CCG91834.1 402 YGITSLVILAITLLCLW 418
                 77887777777665544 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0032
        CcmD  13 itllvlagLilwslrdrrrllrelrrleaR 42 
                 +t +v+a+++ + +++ r++ ++ rr+eaR
  CCG91834.1 482 FTYFVVALVLGQFIARLRAQEKAERRREAR 511
                 7899*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (903 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.47
# Mc/sec: 5741.32
//
Query:       CCG91835.1  [L=220]
Description: 50S ribosomal protein L25 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-21   74.8   0.2    9.6e-21   74.1   0.2    1.3  1  Ribosomal_L25p   Ribosomal L25p family
    8.5e-21   74.1   0.1    1.5e-20   73.3   0.1    1.4  1  Ribosomal_TL5_C  Ribosomal protein TL5, C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L25p  Ribosomal L25p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.2   1.1e-24   9.6e-21       1      81 []       7      97 ..       7      97 .. 0.90

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 1.1e-24
                    EEEEECTS.SCCCHHHHHHTTEEEEEEEESSSCEEEEEEEHHHHHHHCH.....CSEEEEEE.T...T..CEEEEEEEEEETTTTCEEEEEE CS
  Ribosomal_L25p  1 LkaekRte.gkgaarrlRregkvPavlyGggkepisisvdakelrkllkt....stlieLev.d...g..ekvllkdvqrhpvkdkilHvDF 81
                    Lka+ R+  gk+a+++lR++g++Pa+lyG+ k +++++++a elr l++     + l++Le+ d   +  + ++l+++q hp++dk++H+D+
      CCG91835.1  7 LKANIRKAvGKSAVKKLRANGRIPAILYGK-KSNLPLEIPATELRDLFHGkrveKVLLNLEIiDteeKksTLAFLQEIQLHPITDKLVHLDL 97
                    7999**988********************9.67***************657999999999985565425569*******************7 PP

>> Ribosomal_TL5_C  Ribosomal protein TL5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.1   1.7e-24   1.5e-20       1      85 [.     105     188 ..     105     189 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 1.7e-24
                      -SEEEEEEEEES..--TTTT.TTSEEEESSSEEEEESSTTS--SSEEEE-TT--SSBEEETTTS--SSS-EESS-TTSEEEEEE-- CS
  Ribosomal_TL5_C   1 kvtveVpvhfvgeeespgvk.kggvleqvlreveveclpkdlPeeievDvsgleigdsihvsdlklpegvelltdpdevvvsvvap 85 
                      k+++e+ ++f+g  e++++k ++  l++ lr ++++c pkdlP+ i v++++l+ g+s+hv+d++lp gve l+ +++vv+s va+
       CCG91835.1 105 KLHAEIDLVFIG--EPQALKsGTANLDISLRRLKISCFPKDLPNTIPVSIEQLKTGESLHVADIPLPPGVECLNPKNQVVLSLVAT 188
                      689*********..99****89999*********************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1699.48
//
Query:       CCG91836.1  [L=184]
Description: Peptidyl-tRNA hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-53  179.3   0.0    6.6e-53  179.2   0.0    1.0  1  Pept_tRNA_hydro  Peptidyl-tRNA hydrolase
  ------ inclusion threshold ------
      0.031   13.5   0.0      0.041   13.1   0.0    1.2  1  RhaT             L-rhamnose-proton symport protein (RhaT)


Domain annotation for each model (and alignments):
>> Pept_tRNA_hydro  Peptidyl-tRNA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.2   0.0   7.4e-57   6.6e-53       1     170 [.       4     181 ..       4     182 .. 0.87

  Alignments for each domain:
  == domain 1  score: 179.2 bits;  conditional E-value: 7.4e-57
                      EEEE---SSTCCTTCGGGHHHHHHHHHHHH........TCEEEE....EETTEEEEEEEESS-GGGHHHHHHHHHHHCT--..GEEEEEEETTS CS
  Pept_tRNA_hydro   1 livGLGNpgkeYektRHNvGflvvdelakk........aevaeg....kiegekvlllkPqtymNlsGeavkellkfykieseeilvvhDdldl 82 
                      ++vGLGNpgkeYe+tRHN+G++vv+el+kk        +    +       +e+++++ P++ymNlsG+av ++lk++k++++eilv+ Dd++l
       CCG91836.1   4 MVVGLGNPGKEYENTRHNIGWKVVEELVKKerlsfvidK----KslakVALKEDLCFMLPLSYMNLSGKAVGAYLKKWKCDPKEILVLLDDISL 93 
                      69**************************99666655543....14444777888999************************************* PP

                      STTEEEEEESS--TT-HHHHHHHHHHT-S-SEEEEEEE---ST-CGGHHHHCTSB-HHHHHC.HHHHHHHHHHCHHHHHHHTSCCHCCC CS
  Pept_tRNA_hydro  83 plgkirlkkkgssgghnGlksiikklgtekfvRlriGIgrpekakkkvadyVLskfskeeek.leevlekaaealeellkeeleaamnk 170
                      plgk+r++ kgssggh+Gl+s+i++l++e+++Rlr+GIg  + + +++++yVL++f++ee++ ++e++ ka+  ++ l ke++e a nk
       CCG91836.1  94 PLGKLRFRFKGSSGGHKGLQSLIEELHSEEIPRLRLGIGPLP-EGEELVHYVLKPFKEEEKEkVKEMILKAIAFFDCLQKEGVEIALNK 181
                      ***************************************544.3667**********999555****9998877765555668777776 PP

>> RhaT  L-rhamnose-proton symport protein (RhaT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.6e-06     0.041     278     322 ..      43      86 ..      21      93 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.6e-06
        RhaT 278 wghakipaqydymswmlhmsfyvlcgglvglllkewknatkkpva 322
                    ak+  + d + +ml +s+  l g  vg  lk+wk+  k+ + 
  CCG91836.1  43 KSLAKVALKED-LCFMLPLSYMNLSGKAVGAYLKKWKCDPKEILV 86 
                 55566666555.789***********************9887554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1452.98
//
Query:       CCG91837.1  [L=111]
Description: 30S ribosomal protein S6 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-17   63.6   0.2    1.8e-17   63.4   0.2    1.1  1  Ribosomal_S6    Ribosomal protein S6
      0.008   16.2   0.0      0.015   15.3   0.0    1.6  1  TrbC_Ftype      Type-F conjugative transfer system pilin asse
  ------ inclusion threshold ------
       0.02   15.2   0.3      0.055   13.8   0.2    1.8  2  T3RM_EcoP15I_C  Type III R-M EcoP15I C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S6  Ribosomal protein S6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.2   3.1e-21   1.8e-17       2      90 .]       5      93 ..       4      93 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 3.1e-21
                  EEEEEEE-TTS-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEESCCHHHHHHHHHHCSTTEEEEEEEE CS
  Ribosomal_S6  2 YElvfilrpelseeevkelvekvgklilenggvvrkveswGkrkLaypikkkteGyyvlmnfdaspevikelertlrldervlRylivk 90
                  Y+ ++il+ + +ee++kel+e+++k+i+  gg++ +++++ +rk+ +   k  +Gyyv + ++++p  +kele +lr+++++ R   vk
    CCG91837.1  5 YDALYILDTQGKEEAIKELIEQIEKTITTLGGKILNIQKMDRRKFERVAGKIDSGYYVNFGVEIPPHSLKELEAKLRINPSIYRQFYVK 93
                  9***********************************************************************************99887 PP

>> TrbC_Ftype  Type-F conjugative transfer system pilin assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.6e-06     0.015      45      82 ..      50     105 ..      13     109 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.6e-06
  TrbC_Ftype  45 akllee..................emekasvqidPllFrqfkitaVPalvlaeedk 82 
                 +++  +                  ++ +a+++i+P ++rqf +++ P+ + +++++
  CCG91837.1  50 ERVAGKidsgyyvnfgveipphslKELEAKLRINPSIYRQFYVKREPSRITIQKNH 105
                 3333335556777777777777777889********************99988765 PP

>> T3RM_EcoP15I_C  Type III R-M EcoP15I C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   9.2e-06     0.055      36      61 ..       5      30 ..       1      44 [. 0.86
   2 ?   -1.5   0.0      0.54   3.2e+03      70      88 ..      62      80 ..      41      83 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.2e-06
  T3RM_EcoP15I_C 36 ekkLYliekglesealkaLieklded 61
                     + LY+++++ ++ea+k+Lie+++++
      CCG91837.1  5 YDALYILDTQGKEEAIKELIEQIEKT 30
                    578********************954 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.54
  T3RM_EcoP15I_C 70 vlfgysfeskelreleenl 88
                    v fg ++  ++l+ele  l
      CCG91837.1 62 VNFGVEIPPHSLKELEAKL 80
                    5566667777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1020  (0.0568911); expected 358.6 (0.02)
Passed bias filter:                      737  (0.0411066); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 889.24
//
Query:       CCG91838.1  [L=146]
Description: Single-stranded DNA-binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-37  125.4   0.0      1e-36  125.1   0.0    1.1  1  SSB              Single-strand binding protein family
    0.00031   20.7   0.1    0.00045   20.2   0.1    1.3  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
      0.076   13.2   0.0       0.11   12.7   0.0    1.3  1  tRNA_anti_2      OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> SSB  Single-strand binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.0   1.7e-40     1e-36       1     104 []       4     107 ..       4     107 .. 0.99

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 1.7e-40
                 ECEEEEEEEESSS-EEEEETTSEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEEHHHHHHHHHH--TT-EEEEEEEEEEEEEECTTSCEEEEEEEEEE CS
         SSB   1 vnkvilvGrlgkdpelrqtesGnavarftlatnrrfkdqegekdeetewhrvvvfgklaevvaeylkkGslvyveGrlqtrkyedqegqkrysteivae 99 
                 +nkv+l+G+l++dpe r+t++G++v +++la+n++++ q+g+ ++e+++++vv++g++ae+++eyl+kGslv+veGrlq++++e +eg+kr++ ++ a+
  CCG91838.1   4 LNKVFLMGNLTRDPECRYTPKGTPVGDISLAINSSYRAQDGQVKDEVCFVEVVIWGRQAETCKEYLQKGSLVFVEGRLQMEQWETKEGEKRTRMRVRAD 102
                 69************************************************************************************************* PP

                 EEEEE CS
         SSB 100 evqfl 104
                 ++qfl
  CCG91838.1 103 RIQFL 107
                 ***97 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   7.5e-08   0.00045      18      74 ..      41     105 ..      31     107 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 7.5e-08
                      EEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEEC.........TTSSEEEEEEEEE CS
  tRNA_anti-codon  18 vifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrr.........pggelelkveeie 74 
                      +++ +++D+   ++vv++  +a+  +e l++G++v v+Gr++           ++  + + +++i+
       CCG91838.1  41 AQDGQVKDEVCFVEVVIWGRQAETCKEYLQKGSLVFVEGRLQMEqwetkegekRT-RMRVRADRIQ 105
                      56778999999******************************99866664333222.4666666665 PP

>> tRNA_anti_2  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.8e-05      0.11      43      80 ..      46      83 ..      31     102 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.8e-05
  tRNA_anti_2 43 LkDekakisavifrsraaklkftledGmkVlvkgrlsv 80
                  kDe + +++vi+ ++a+++k  l++G  V v+grl++
   CCG91838.1 46 VKDEVCFVEVVIWGRQAETCKEYLQKGSLVFVEGRLQM 83
                 6888899**************99************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1087.19
//
Query:       CCG91839.1  [L=192]
Description: 50S ribosomal protein L9 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-19   70.0   0.6    3.8e-19   68.9   0.6    1.5  1  Ribosomal_L9_C  Ribosomal protein L9, C-terminal domain
    3.8e-18   64.8   0.3    6.4e-18   64.0   0.3    1.4  1  Ribosomal_L9_N  Ribosomal protein L9, N-terminal domain
  ------ inclusion threshold ------
        6.9    6.9  17.6       0.45   10.7  12.0    1.8  2  AP3D1           AP-3 complex subunit delta-1
          7    7.4  11.8        3.3    8.4   4.3    2.3  2  U1snRNP70_N     U1 small nuclear ribonucleoprotein of 70kDa M


Domain annotation for each model (and alignments):
>> Ribosomal_L9_C  Ribosomal protein L9, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.6   8.4e-23   3.8e-19       1      84 [.      65     147 ..      65     148 .. 0.90

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 8.4e-23
                     HHHHHHHHHHSS..-EEEE--B-T.T-BBSS---HHHHHHHHHHHT-----GGGEE-TTT-SBSSEEEEEEESSSS-EEEEEEEE CS
  Ribosomal_L9_C   1 eeaealaekLeakvkvtikakage.dgklFGsVtakdIaealkkklgieidkkkieleepiktlGeyevtvkLhkevtakikveV 84 
                     e+a +la+k+  ++++t++    e ++k+FG+Vt++dI+e+l+++ gi+id+kki+le+p+k+ G + v++++h+ev a+++ve 
      CCG91839.1  65 EAALELASKIG-SLRLTFNLIGEEkTKKVFGAVTSQDICEKLAQE-GIQIDRKKISLERPLKESGLHVVPIHIHQEVLAQLQVEL 147
                     57899*****9.666677666555599******************.*************************************96 PP

>> Ribosomal_L9_N  Ribosomal protein L9, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.3   1.4e-21   6.4e-18       1      43 [.       3      45 ..       3      49 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 1.4e-21
                    -EEEESSCBTTTBSSS-EEE--HHHHHHTTTTTTSEEE-SHHH CS
  Ribosomal_L9_N  1 MkVILlkdVkglGkkGdvveVkdGyaRNyLipqglAvyAtpen 43
                    ++VIL+k+ +++G +Gd+v+Vk+GyaRNyLip+g+A  At++ 
      CCG91839.1  3 IEVILNKKLDKVGAEGDLVTVKAGYARNYLIPKGFATLATSAT 45
                    58**************************************986 PP

>> AP3D1  AP-3 complex subunit delta-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.3      0.39   1.7e+03      92     102 ..      53      63 ..      38      90 .. 0.59
   2 ?   10.7  12.0    0.0001      0.45      46     112 ..     120     190 ..      83     192 .] 0.56

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.39
       AP3D1  92 kkkkkkkkkkk 102
                 kk + ++++k+
  CCG91839.1  53 KKIRAEREEKE 63 
                 22222222221 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0001
       AP3D1  46 eipvaeldls.vplkvpglkrsdkylee...eesrkakkkakeekkkkkkkkkkkkkkkkkkkkkkeeess 112
                 e p +e  l+ vp+++++ +  +  +e    +++++ + +a+++kk++kkkk+kk  ++kk + kk+e+ss
  CCG91839.1 120 ERPLKESGLHvVPIHIHQEVLAQLQVELvfpKKETETETTASQDKKSEKKKKNKKGAQTKKAQPKKSETSS 190
                 34555555557888999866666666664444455555555555554444444444444433333333333 PP

>> U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.8     0.023   1.1e+02      62      85 ..      45      68 ..      34      74 .. 0.59
   2 ?    8.4   4.3   0.00074       3.3      43      85 ..     140     180 ..     113     187 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.023
  U1snRNP70_N 62 keekkererkekkekkeekleeal 85
                  + + er +k ++e++e++ e al
   CCG91839.1 45 TKLQVERLKKIRAEREEKEKEAAL 68
                 444555555555555555555544 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00074
  U1snRNP70_N  43 lselkedeeeqeppektetkeekkererkekkekkeekleeal 85 
                  l++l  + e   p+++tet+ +  ++++ ekk+k+++ +++++
   CCG91839.1 140 LAQL--QVELVFPKKETETETTASQDKKSEKKKKNKKGAQTKK 180
                  4455..4456667777888888888888888888877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2431  (0.13559); expected 358.6 (0.02)
Passed bias filter:                      694  (0.0387082); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 1404.28
//
Query:       CCG91840.1  [L=900]
Description: Outer membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-64  214.0  29.1    8.1e-16   58.4   2.0    5.5  6  POTRA           Surface antigen variable number repeat
    8.5e-48  163.5   9.1    1.3e-47  162.9   9.1    1.3  1  Bac_surface_Ag  Surface antigen
    3.5e-10   39.6   3.2     0.0078   16.0   0.0    4.4  4  POTRA_2         POTRA domain, ShlB-type
    2.2e-09   37.5   7.6     0.0032   17.7   0.3    4.3  4  POTRA_1         POTRA domain, FtsQ-type


Domain annotation for each model (and alignments):
>> POTRA  Surface antigen variable number repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   1.3e-08   5.9e-05       5      77 ..     152     216 ..     146     219 .. 0.77
   2 !   46.6   0.4   8.8e-16     4e-12       3      80 .]     222     298 ..     220     298 .. 0.93
   3 !   46.9   1.6     7e-16   3.1e-12       6      80 .]     306     388 ..     303     388 .. 0.91
   4 !   56.5   0.2   6.9e-19   3.1e-15       1      80 []     391     469 ..     391     469 .. 0.92
   5 !   58.4   2.0   1.8e-19   8.1e-16       2      79 ..     473     544 ..     472     545 .. 0.88
   6 ?   -3.9   0.0         4   1.8e+04      45      57 ..     884     896 ..     883     899 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.3e-08
                 EEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EEEEEEHSSTTSEEEEEEEEEE CS
       POTRA   5 kinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasVqvelpeddedknrvdltinv 77 
                 +i+++G k +  + +++ ++++ g++y++ ++e+d++    +++++G f+ + ++++      +  v++++ v
  CCG91840.1 152 EIVYVGPKSVNRSMILSNMRTTVGQPYSATTIEEDVR----NLYATGLFT-NLRITT---ETVAEGVKVIVIV 216
                 25556999*****************************....********9.886666...3333334465555 PP

  == domain 2  score: 46.6 bits;  conditional E-value: 8.8e-16
                 EEEEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EE..EEEEHSSTTSEEEEEEEEEEEE- CS
       POTRA   3 ikkinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasV..qvelpeddedknrvdltinvdEg 80 
                 +k+++++G+k+++ e +r+++++k gd++++ +++ad e+++++y+n+G+ +a+V  +++    +e+ +r ++ +++ Eg
  CCG91840.1 222 VKEVTIQGAKQIPVERIRKQVKTKIGDPLSEFQVSADAEKIREYYQNHGFGNAQVtyKIDV---NEEFGRAIVSFSISEG 298
                 99*****************************************************665555...8899999*******98 PP

  == domain 3  score: 46.9 bits;  conditional E-value: 7e-16
                 EEEES.SSS-HHHHHTTTSSSTT.........SBHCHHHHHHHHHHHHHHHHCTT-EE.EE.EEEEHSSTTSEEEEEEEEEEEE- CS
       POTRA   6 infeGnkktkdeelrrelelkeg.........dvynpekleadkealksryanlGyfdasV.qvelpeddedknrvdltinvdEg 80 
                 +nf+Gnk+++  el+++l++k+          +++++++l++d+++lk++y+++Gy+d ++ +v++  ++++k ++ +ti++ Eg
  CCG91840.1 306 VNFVGNKAFSNAELQKQLKTKKKnilsfvnksGIFKEDQLQEDLRKLKEFYQDHGYIDMQIkDVKI--STPEKEKMVVTISIFEG 388
                 89******************888888888888***************************9998877..677777788****9997 PP

  == domain 4  score: 56.5 bits;  conditional E-value: 6.9e-19
                 EEEEEEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EEEEEEHSSTTSEEEEEEEEEEEE- CS
       POTRA   1 vkikkinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasVqvelpeddedknrvdltinvdEg 80 
                 +k++ i+f+Gn  ++ ++l++ +++keg v++p+ l++d++a++++y+++Gy+da++++e    + +++r+dl +++ Eg
  CCG91840.1 391 YKVGTIQFQGNVIYPNSDLLDSIKMKEGSVFSPKGLDDDIKAIRDLYGKQGYIDAEIKPER-LANIENGRIDLLFKISEG 469
                 89*******************************************************9888.4455566667*******8 PP

  == domain 5  score: 58.4 bits;  conditional E-value: 1.8e-19
                 EEEEEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EEEEEEHSSTTSEEEEEEEEEEEE CS
       POTRA   2 kikkinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasVqvelpeddedknrvdltinvdE 79 
                 +i ki ++Gn++tkd+++rrel +++gdvy++ ++ea+k+    r++nlGyf+ +V++++ +d++ +nr + +i+v+E
  CCG91840.1 473 YIDKIIIQGNNQTKDKVIRRELAVTPGDVYDSVRVEASKK----RLENLGYFE-KVEINP-QDTNVPNRKNMVISVQE 544
                 89**************************************....*********.775555.5566666666****999 PP

  == domain 6  score: -3.9 bits;  conditional E-value: 4
                 HHHHCTT-EE.EE CS
       POTRA  45 sryanlGyfdasV 57 
                 s ++++G f ++V
  CCG91840.1 884 SWLNKTGRFYFDV 896
                 5788999999988 PP

>> Bac_surface_Ag  Surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   9.1     3e-51   1.3e-47       2     324 .]     581     900 .]     580     900 .] 0.93

  Alignments for each domain:
  == domain 1  score: 162.9 bits;  conditional E-value: 3e-51
                     TSSSS-EEEEEEEESSSEEEEEEEEEESTSSTTS-EEEEEEEEEE.GGGTBS.S-EEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEES---BHH CS
  Bac_surface_Ag   2 llGtGqslslsaslgsyeqslnlsftePyflgdrvslglslfare.sdsdesdsyrtksvgfsvslgrpltenyslslglsvqknkilkdsssen 95 
                     + G+Gq+++++++lg  + s+ lsfteP+f ++++ +g++lf+++    + ++ ++++++g++++l  +l++  +ls+++ ++ +++    ++ +
      CCG91840.1 581 FTGAGQKFRFRLQLGIFMESAMLSFTEPWFMDQPLMVGFDLFFNQlTYLQFYNGFNETQYGLDLRLAKRLNQWFTLSTRYDFNVYDLWGYLPEVE 675
                     78******************************************9888889999********************************999999999 PP

                     HHHHHHSCS--EEEEEEEEEEEEEEEEEESSSSS-SSEEEEEEEEEEE-..TTSSS-EEEEEEEEEEEEESSTTSSSEEEEEEEEEEEEESSSS- CS
  Bac_surface_Ag  96 nrnvssasklqtgksltsslslslsydtrddalfPtrGvllklrleftgpllggdvsylkldakasyyvpltkekdlvlaarvalgyisgygtkd 190
                     n  v+   ++++g +++s+++++l yd+rd+ +  + G +l++++  +g++l g+   ++l+ ++s +  +    d+++  ++++g+ ++yg++ 
      CCG91840.1 676 NIPVF---AQNRGSRTQSDITMDLIYDSRDSVFVTRHGTFLDFNILGAGGPLLGQTDIYRLQLDISHFENFP-LWDIIMWNHLTAGFVQQYGKSS 766
                     99988...9*******************************************************98876665.679******************* PP

                     .--GGG-B-BSSTTSSTEE-TT-BS-EEE.EEEE--BSEEEEEEEEEEEE-SSS-GGTTEEEEEEEEEEE....EE-TT--TTTTTTS--TTTS- CS
  Bac_surface_Ag 191 elpfyerFyaGGsnsvRGfesgglgprde.sgdalGGdsyavaslElrfplpflkkqnsvrlalFfDaGn....vwdkegqspsssrsasstaei 280
                      +p+++ +++GG  s+RGf ++ +gp+    + ++GG+++av +lE++fp+      + vr+a+F D+G+    + + +++ p+ +  a +  +i
      CCG91840.1 767 FVPLFDSYFVGGPRSLRGFDYNLVGPNYLpLDFPIGGQTMAVWNLEFTFPV-----VDRVRFAVFNDMGFnagsLIGPNQPVPTPFV-AGQGINI 855
                     **************************9888888******************.....446******7655533338899999998664.55568** PP

                     EEEEEEEEEEEETTEEEEEEEEEEEE-STT.--EESEEEEECEEE CS
  Bac_surface_Ag 281 rasvGvgLrwqsPlGPlrfdyAiplkkedg.dktqrFqFgiGttF 324
                      a++G gLr+ +P+GPlr+dy+ip  ++    kt rF+F +G +F
      CCG91840.1 856 DADYGFGLRLFLPIGPLRLDYGIPYLRQSWlNKTGRFYFDVGYSF 900
                     ***********************987776669999*******998 PP

>> POTRA_2  POTRA domain, ShlB-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   4.7e-06     0.021       3      58 ..     222     277 ..     221     284 .. 0.94
   2 !    5.7   0.1     0.003        13       7      53 ..     307     362 ..     303     367 .. 0.62
   3 !   16.0   0.0   1.7e-06    0.0078       4      71 ..     394     462 ..     391     469 .. 0.91
   4 ?   -3.7   0.0       2.5   1.1e+04       3      24 ..     474     495 ..     474     516 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.7e-06
                 .SEEEEESGCCSSHCCHHHHHCCCSSSEEEHHHHHHHHHHHHHHHHHTT-TT-EEE CS
     POTRA_2   3 ikkielegntllsleeleallqpylgkclgladlnqlakeltnayiekGYvtsrvl 58 
                 +k++ ++g+++++ e++++ ++  +g +l+  ++++ a ++ + y+++G+  ++v+
  CCG91840.1 222 VKEVTIQGAKQIPVERIRKQVKTKIGDPLSEFQVSADAEKIREYYQNHGFGNAQVT 277
                 799**********************************************9877775 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.003
                 EEESGCCSSHCCHHHHHCCCSSSEEE.........HHHHHHHHHHHHHHHHHTT-T CS
     POTRA_2   7 elegntllsleeleallqpylgkclg.........ladlnqlakeltnayiekGYv 53 
                 ++ gn+++s++el++ l+  +   l+           +l++ +++l ++y+++GY+
  CCG91840.1 307 NFVGNKAFSNAELQKQLKTKKKNILSfvnksgifkEDQLQEDLRKLKEFYQDHGYI 362
                 566666666666666555544443331111111115789999999**********8 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 1.7e-06
                 SEEEEESGCCSSHCCHHHHHCCCSSSEEEHHHHHHHHHHHHHHHHHTT-TT-EEEE.EECCEETTEEEE CS
     POTRA_2   4 kkielegntllsleeleallqpylgkclgladlnqlakeltnayiekGYvtsrvll.ppqdlesGtlkl 71 
                   i+++gn ++++++l   ++  +g   + ++l   +k++ ++y ++GY+ + +   +  ++e+G ++l
  CCG91840.1 394 GTIQFQGNVIYPNSDLLDSIKMKEGSVFSPKGLDDDIKAIRDLYGKQGYIDAEIKPeRLANIENGRIDL 462
                 579***********************************************9999997677999998876 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 2.5
                 .SEEEEESGCCSSHCCHHHHHC CS
     POTRA_2   3 ikkielegntllsleeleallq 24 
                 i+ki ++gn + +++ +++ l+
  CCG91840.1 474 IDKIIIQGNNQTKDKVIRRELA 495
                 6788899999998888877655 PP

>> POTRA_1  POTRA domain, FtsQ-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   8.4e-06     0.038       3      45 ..     222     264 ..     221     267 .. 0.91
   2 !    6.6   0.1    0.0022       9.7       6      37 ..     306     337 ..     303     354 .. 0.76
   3 ?   -1.3   0.0      0.64   2.9e+03       3      28 ..     393     418 ..     392     423 .. 0.83
   4 !   17.7   0.3   7.1e-07    0.0032       3      55 ..     474     526 ..     473     544 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.4e-06
                 X-EEEEES-SS--HHHHHHHHHTTSTT-GGGS-HHHHHHHHHH CS
     POTRA_1   3 ikqvevsGnkhlsseeiikalgiekgtslfsldleaieqrlek 45 
                 +k+v+++G k+++ e i+k+++ + g++l +++++a ++++++
  CCG91840.1 222 VKEVTIQGAKQIPVERIRKQVKTKIGDPLSEFQVSADAEKIRE 264
                 79****************************9999888887765 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0022
                 EEEES-SS--HHHHHHHHHTTSTT-GGGS-HH CS
     POTRA_1   6 vevsGnkhlsseeiikalgiekgtslfsldle 37 
                 v+++Gnk  s++e++k+l+ +k++ l  ++++
  CCG91840.1 306 VNFVGNKAFSNAELQKQLKTKKKNILSFVNKS 337
                 7899**************99997666555554 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.64
                 X-EEEEES-SS--HHHHHHHHHTTST CS
     POTRA_1   3 ikqvevsGnkhlsseeiikalgiekg 28 
                 + +++++Gn   ++ ++++ ++ ++g
  CCG91840.1 393 VGTIQFQGNVIYPNSDLLDSIKMKEG 418
                 7799*************998877765 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 7.1e-07
                 X-EEEEES-SS--HHHHHHHHHTTSTT-GGGS-HHHHHHHHHH-TTEEEEEEE CS
     POTRA_1   3 ikqvevsGnkhlsseeiikalgiekgtslfsldleaieqrleklpwvksasVr 55 
                 i ++ ++Gn++++++ i+++l++++g+ + s+ +ea ++rle l + ++++++
  CCG91840.1 474 IDKIIIQGNNQTKDKVIRRELAVTPGDVYDSVRVEASKKRLENLGYFEKVEIN 526
                 689****************************************9999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 5733.59
//
Query:       CCG91841.1  [L=54]
Description: hypothetical protein MFUM_230020 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 427.42
//
Query:       CCG91842.1  [L=199]
Description: Outer membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-25   90.5  16.6    1.5e-25   90.1  16.6    1.2  1  OmpH           Outer membrane protein (OmpH-like)
     0.0051   15.7   9.7     0.0067   15.3   9.7    1.1  1  CALCOCO1       Calcium binding and coiled-coil domain (CALCOC
  ------ inclusion threshold ------
      0.029   14.0  10.5      0.042   13.5  10.5    1.2  1  Lebercilin     Ciliary protein causing Leber congenital amaur
      0.031   14.2   0.4      0.073   13.0   0.1    1.7  2  Peptidase_C14  Caspase domain
      0.063   14.4   4.7       0.11   13.6   4.7    1.3  1  SOGA           Protein SOGA
        0.1   12.9   1.6       0.16   12.3   1.6    1.3  1  SPATIAL        SPATIAL
       0.12   12.5   6.0       0.17   12.0   6.0    1.2  1  DUF2096        Uncharacterized protein conserved in archaea (
       0.12   12.8   9.3       0.22   12.0   9.3    1.4  1  DUF1690        Protein of Unknown function (DUF1690)
       0.28   11.5   8.0       0.13   12.5   1.6    3.0  3  DUF4164        Domain of unknown function (DUF4164)
       0.37   11.2   9.9       0.26   11.7   7.3    2.0  2  eIF3_N         eIF3 subunit 6 N terminal domain
       0.92    9.5   7.8        0.1   12.5   0.9    2.0  2  SPOUT_MTase    Predicted SPOUT methyltransferase
          7    7.1  12.9       0.75   10.2   6.6    2.3  3  Syntaxin_2     Syntaxin-like protein


Domain annotation for each model (and alignments):
>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1  16.6     1e-28   1.5e-25       1     136 [.      26     183 ..      26     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 1e-28
                 TEEEE-HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.........-HHHHHHHHHHHHHHHHHHHHHH........HHH CS
        OmpH   1 kiavvdvqkileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle........keekeqelqkkeqelqqkqqqka........qel 83 
                 ki+vvd+qk+++++ ++k+a++++++k +++++e ++++++l+k  ee +k   +++        ++ek++++++k q++q+ +q+k+        +el
  CCG91842.1  26 KIGVVDLQKAFNDFYKTKEADAEMKSKVAAFEKERQEMANDLNKVGEEAKKMHDAAQdktlseaaRAEKQKAFEAKAQDFQA-MQRKFqefqyvrtKEL 123
                 8*********************999999555555555555555555555433333212455556677777776666666666.555553444444688* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEE........GGG-S---GGGB-HHHHHH CS
        OmpH  84 qkkqqellkpildkinkaikevakekgydlvld.......srgavlyaddklDiTdeVlk 136
                 ++++q ++++i+d i+kai e+ ++++++lv+d       +++++ly++d +DiTdeV++
  CCG91842.1 124 EDRSQRIRQNIIDDITKAILEISSREKFTLVFDksgkslsGTNVLLYSQDVKDITDEVIR 183
                 ***************************************9889999************97 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   9.7   4.5e-06    0.0067      46     147 ..      32     136 ..      27     147 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.5e-06
    CALCOCO1  46 Llqaqeaanrqrekekeeykrdreeldrerkelesrveelkeelkesre...kveeleekqkelerlseelaeeksallea.keesearirELEeDikt 140
                 L +a++   + +e +  e+k++  ++++er+e+ ++++++ ee+k++++   +++  e+ + e++++ e+ a++++a+ ++ +e + +r +ELE+ ++ 
  CCG91842.1  32 LQKAFNDFYKTKEAD-AEMKSKVAAFEKERQEMANDLNKVGEEAKKMHDaaqDKTLSEAARAEKQKAFEAKAQDFQAMQRKfQEFQYVRTKELEDRSQR 129
                 666666677788888.899999*********************999988553444455566677888888888888887762555789**********9 PP

    CALCOCO1 141 ltqrale 147
                 + q  ++
  CCG91842.1 130 IRQNIID 136
                 9998876 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5  10.5   2.8e-05     0.042      67     155 ..      37     129 ..      32     145 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.8e-05
  Lebercilin  67 eEvrvlrerlRksqekerelekklkekeaellrlkdklkklkkLsedknLaereeLqkk..LeeleakleekeekikeLe..rkleleeksfr 155
                 ++   ++e   +++ k+ + ek+ +e  ++l+++ ++ kk+++ ++dk+L e ++ +k+   e+  + +++ ++k++e +  r  ele++s+r
  CCG91842.1  37 NDFYKTKEADAEMKSKVAAFEKERQEMANDLNKVGEEAKKMHDAAQDKTLSEAARAEKQkaFEAKAQDFQAMQRKFQEFQyvRTKELEDRSQR 129
                 555566777778999***********************************9966555443388888888888888888764455555555554 PP

>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.88   1.3e+03     152     170 ..      56      74 ..      33     100 .. 0.55
   2 ?   13.0   0.1   4.9e-05     0.073      22     115 ..     102     193 ..      92     198 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.88
                    CHHHHHHCSHHCEEECTTT CS
  Peptidase_C14 152 sskekkpekqslsklpsea 170
                     +ke++++++ l+k+  ea
     CCG91842.1  56 FEKERQEMANDLNKVGEEA 74 
                    3444444444444443333 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4.9e-05
                    HHHHHHHHHHHHHHTTEEEEEEEGGEES-CHHHHHHHHHHHHCHSGGTTESEEEEEEESEEET....EEECTTCSSEEEHHHHHHTTSTTTHGG CS
  Peptidase_C14  22 anDaermaklLvkrlgFevenililtddptgknirkalkwlvksadhspgDslvvhysGHGtrvpaecivpvdvnsliqdddirdlfggdklps 115
                    a D ++m++ + +++++  ++ l +  +  ++ni++ +++++ +  ++++ +lv+  sG++    +  +++ d  + i+d+ ir++  +++ p+
     CCG91842.1 102 AQDFQAMQRKF-QEFQYVRTKELEDRSQRIRQNIIDDITKAILEISSREKFTLVFDKSGKSLSGTNVLLYSQD-VKDITDEVIRTINATKPQPK 193
                    689********.*********9999999*****************9999999**********66777******.99999998888776666555 PP

>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   4.7   7.4e-05      0.11      19      90 ..      49     117 ..      38     121 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.4e-05
        SOGA  19 lrrslseleeenkqlteeLnkyksklgeeessleeeeeassdsskeaelkeeLklarlqineLsgkvvkLqv 90 
                 ++ +++  e+e++++ ++Lnk   ++++ + ++++  ++ s++   ae ++  ++  ++ + +++k  ++q+
  CCG91842.1  49 MKSKVAAFEKERQEMANDLNKVGEEAKKMHDAAQD--KTLSEA-ARAEKQKAFEAKAQDFQAMQRKFQEFQY 117
                 8999******************9999999988877..455544.5677888999999999999*******98 PP

>> SPATIAL  SPATIAL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.6   0.00011      0.16      44     161 ..      25     144 ..       5     147 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
     SPATIAL  44 allgvpslsvpigdseskkeprlklssvseawreelkelaskvalvsketekkkeekkeepevkrktqySaetGRlippssralsrrsssesrrska.. 140
                   +gv  l+ ++ d  + ke+ +++ s  +a+++e +e+a+ ++ v +e++k++++ ++++ ++  +   +++   ++   +a++r+ ++ ++  ++  
  CCG91842.1  25 LKIGVVDLQKAFNDFYKTKEADAEMKSKVAAFEKERQEMANDLNKVGEEAKKMHDAAQDKTLSEAARAEKQKAFEAKAQDFQAMQRKFQEFQYVRTKel 123
                 3456667777788889999999**99********************99999999977777744444444444555677788888887776555444301 PP

     SPATIAL 141 snkektvqipllqdqElliLe 161
                 + ++++++  ++ d    iLe
  CCG91842.1 124 EDRSQRIRQNIIDDITKAILE 144
                 455555666667776666666 PP

>> DUF2096  Uncharacterized protein conserved in archaea (DUF2096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.0   0.00011      0.17      32     148 ..      32     151 ..      20     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
     DUF2096  32 laktiinfYkldphapdlikelkkaekelneiqeaLldlaekvdeeyakkwldklkkasrgekvleepkkkskFivevpr..gfetirvk.lkkpleee 127
                 l k+  +fYk+ + + ++  +++  eke +e+ + L ++ e+  +   +   + l +a+r ek+  ++ k   F    ++  +f+++r k l+   +  
  CCG91842.1  32 LQKAFNDFYKTKEADAEMKSKVAAFEKERQEMANDLNKVGEEAKKMHDAAQDKTLSEAARAEKQKAFEAKAQDFQAMQRKfqEFQYVRTKeLEDRSQRI 130
                 5677789*********************************655555555555568*******************8877776789999987244333333 PP

     DUF2096 128 rlqeiaEyegvIiefeeddvv 148
                 r + i +    I+e+++ ++ 
  CCG91842.1 131 RQNIIDDITKAILEISSREKF 151
                 334455667788888887764 PP

>> DUF1690  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   9.3   0.00014      0.22      17     115 ..      39     135 ..      28     140 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
     DUF1690  17 Lessketdasraqalekliqer..VaeeLkkLraeeeetlkkfeeklekellkdeadakdelsskalnekieeLrkkleefkkkeeeklpeeveearee 113
                   ++ke da+ ++++ ++ +er   a++L+k+     e  kk++++ ++++l++ a+a++++  +a +++ +++++k++ef+  + ++l++  +++r++
  CCG91842.1  39 FYKTKEADAEMKSKVAAFEKERqeMANDLNKV----GEEAKKMHDAAQDKTLSEAARAEKQKAFEAKAQDFQAMQRKFQEFQYVRTKELEDRSQRIRQN 133
                 45566666655555555444332256666666....666778888888888888899999**************************999****999998 PP

     DUF1690 114 vv 115
                 ++
  CCG91842.1 134 II 135
                 87 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.6   8.7e-05      0.13      19      70 ..      31      82 ..      21      88 .. 0.88
   2 ?   -0.0   0.6      0.73   1.1e+03       4       4 ..     121     121 ..      84     148 .. 0.56
   3 ?    0.0   0.0       0.7   1.1e+03      63      79 ..     172     188 ..     166     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.7e-05
     DUF4164 19 sLEkavdrrleaerkrdeleaeiealgedrsRLaeeLdqaearaarleevnr 70
                 L ka +   +++++ +e++++++a +++r+ +a++L ++  +a+++ ++++
  CCG91842.1 31 DLQKAFNDFYKTKEADAEMKSKVAAFEKERQEMANDLNKVGEEAKKMHDAAQ 82
                5777777778899999*******************************99876 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.73
     DUF4164   4 k 4  
                 k
  CCG91842.1 121 K 121
                 2 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.7
     DUF4164  63 arleevnrEvsrrLkaa 79 
                 + ++++++Ev r ++a+
  CCG91842.1 172 QDVKDITDEVIRTINAT 188
                 67899999999999986 PP

>> eIF3_N  eIF3 subunit 6 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   7.3   0.00017      0.26      48     113 ..      38     102 ..      11     118 .. 0.78
   2 ?   -0.2   0.0      0.83   1.2e+03      32      58 ..     137     163 ..     112     196 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
      eIF3_N  48 dyaadlykelegeeevpeelekkreevleeleeleeeaekvlelledeevvsnlrsdkkqnlefLk 113
                 d+ ++ +++ e  +++ +++ek+r+e+ + l+++ eea+k+ +  +d++  ++ r++k++ +e   
  CCG91842.1  38 DFYKTKEADAEM-KSKVAAFEKERQEMANDLNKVGEEAKKMHDAAQDKTLSEAARAEKQKAFEAKA 102
                 444444444433.335568*************************************9999887654 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.83
      eIF3_N  32 ellkaklellkkTnmvdyaadlykele 58 
                 +++ka le+ ++ +++    +  k+l+
  CCG91842.1 137 DITKAILEISSREKFTLVFDKSGKSLS 163
                 444444444444444333333333333 PP

>> SPOUT_MTase  Predicted SPOUT methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.0      0.29   4.4e+02      17      63 ..      33      81 ..      21      91 .. 0.53
   2 ?   12.5   0.9     7e-05       0.1      12      83 ..      94     166 ..      89     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHTTT-EEEEEEE......---S-HHHHHHHHHHT--... CS
  SPOUT_MTase 17 kelieeYlkrlkkyakleiiel..kkekksekeeekakekegerilkkl 63
                 +++++++ k  ++ a+++ +    +ke+++ ++  ++  +e++++ ++ 
   CCG91842.1 33 QKAFNDFYKTKEADAEMKSKVAafEKERQEMANDLNKVGEEAKKMHDAA 81
                 5556665555554444433333113444445555555566666666544 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 7e-05
                  -H.HHHHHHHHHHHHHTTT-EEEEEEE....--.-S-HHHHHHHHHHT--....TT-EEEEE-TTSEE--HHH CS
  SPOUT_MTase  12 kekylkelieeYlkrlkkyakleiielkkekks.ekeeekakekegerilkklkkkayvillderGkelsSee 83 
                  k+k +++ +++++ + +k+ +++ +  k+ +++ ++ ++++ ++ +++il+  +++++++++d++Gk+ls ++
   CCG91842.1  94 KQKAFEAKAQDFQAMQRKFQEFQYVRTKELEDRsQRIRQNIIDDITKAILEISSREKFTLVFDKSGKSLSGTN 166
                  78889999999999999999999999964444436666778888899***999999************99766 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.6    0.0005      0.75      12      96 ..      29     115 ..      21     120 .. 0.81
   2 ?   -0.0   0.2      0.78   1.2e+03      30      47 ..     122     139 ..     115     150 .. 0.53
   3 ?   -0.4   0.3         1   1.5e+03      48      48 ..     147     147 ..     123     197 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0005
  Syntaxin_2  12 vstleklvkq.Lgtkkdteelreklhelieeinelikktnellkklsqldnsssds.qqklqkekLkkdfkealqeFqkiqrqyaek 96 
                 v  l+k +++  +tk    e+++k+    +e +e++++ n+  ++ +++ +  +d+     +++  +k f++  q Fq +qr+++e 
  CCG91842.1  29 VVDLQKAFNDfYKTKEADAEMKSKVAAFEKERQEMANDLNKVGEEAKKMHDAAQDKtLSEAARAEKQKAFEAKAQDFQAMQRKFQEF 115
                 77889999987888889999**99988888888888888888888888888887777556677777999**************9985 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.78
  Syntaxin_2  30 elreklhelieeinelik 47 
                 el ++ + ++++i + i+
  CCG91842.1 122 ELEDRSQRIRQNIIDDIT 139
                 444444444444443333 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1
  Syntaxin_2  48 k 48 
                  
  CCG91842.1 147 S 147
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2959  (0.16504); expected 358.6 (0.02)
Passed bias filter:                      794  (0.0442858); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 1337.95
//
Query:       CCG91843.1  [L=353]
Description: UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-30  103.2  24.0    1.3e-08   34.2   0.9    5.6  5  Hexapep    Bacterial transferase hexapeptide (six repeats)
    7.2e-20   70.5   0.1    1.1e-19   69.9   0.1    1.3  1  LpxD       UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltra
      8e-10   38.3  24.8      0.017   14.9   3.7    6.0  5  Hexapep_2  Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.9   2.2e-12   1.3e-08       4      36 .]     113     145 ..     110     145 .. 0.95
   2 !   26.0   0.3   8.3e-10   4.9e-06       2      35 ..     147     180 ..     146     181 .. 0.96
   3 !    8.8   0.1   0.00023       1.4      20      35 ..     202     217 ..     201     218 .. 0.84
   4 !   32.1   0.6     1e-11   6.1e-08       2      36 .]     224     258 ..     223     258 .. 0.94
   5 !   16.5   0.4   8.5e-07    0.0051       1      36 []     259     294 ..     259     294 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 2.2e-12
                 EETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   4 IGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 IG+ v I p+avi ++VkIGd v+Iga+v ig+
  CCG91843.1 113 IGKEVSIQPYAVIEDGVKIGDKVVIGAFVFIGK 145
                 9******************************96 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 8.3e-10
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 ++IG+n+++ p +++++ ++IG++v++++gvv+g
  CCG91843.1 147 SIIGENSFLYPHVTVRERTVIGKRVILHSGVVVG 180
                 68******************************98 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00023
                 EEE-TTEEEETTEEEE CS
     Hexapep  20 VkIGdnvkIgagvvig 35 
                 V+I d+v Iga+++i 
  CCG91843.1 202 VQIDDDVEIGANTTID 217
                 7899999999999985 PP

  == domain 4  score: 32.1 bits;  conditional E-value: 1e-11
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 t I ++++I++ ++i++nV+IG+n++I+a ++i g
  CCG91843.1 224 TWIQEGSKIDNLVQIAHNVVIGKNSIIAAQTGISG 258
                 7899**************************99975 PP

  == domain 5  score: 16.5 bits;  conditional E-value: 8.5e-07
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 st +G+ v++   + i+g+++IGd+++I a +++++
  CCG91843.1 259 STSLGNQVTLAGQVGIAGHIHIGDGATITAQSGVTK 294
                 6889**************************999985 PP

>> LpxD  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.1   1.9e-23   1.1e-19       2      69 ..      23      88 ..      22      89 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 1.9e-23
                -EEEEEE-CCC--TTCEEEE-SCCCGGGCCC---SEEEEEHHHHCCHTTSCS.EESS-HHHHHHHHHH CS
        LpxD  2 leItgvapleeAgpgdlsFlanpkylkqlattkAgavivppdlaealpanaalivvenPylafakllq 69
                leItgv+++ +A +g+++Fl+np+y++++++tkA+a++v+++ + + +a+   i+v+ P+laf+ +++
  CCG91843.1 23 LEITGVSDIFDASKGQITFLSNPRYESAVEKTKASAIVVSKNYKGSSSATL--IRVDSPSLAFSTIIA 88
                79******************************************9988776..***********9987 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   3.7   2.8e-06     0.017       3      33 ..     106     144 ..     104     145 .. 0.69
   2 !   12.4   0.3   1.6e-05     0.098       4      33 ..     143     180 ..     140     181 .. 0.68
   3 !    7.4   0.2   0.00059       3.5      17      33 ..     200     217 ..     196     218 .. 0.87
   4 !   12.7   0.3   1.3e-05      0.08       1      27 [.     241     269 ..     241     272 .. 0.90
   5 !    4.1   0.3    0.0066        39      15      28 ..     273     288 ..     269     294 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.8e-06
                 EE-TT-EE-TT-EE........SEEE-TT-EE-TT-EE- CS
   Hexapep_2   3 iIGdnCliGanagi........GvslGdncvvgaGvvit 33 
                 iIG+ + iG+   i        Gv++Gd++v+ga v+i 
  CCG91843.1 106 IIGKEVGIGKEVSIqpyaviedGVKIGDKVVIGAFVFIG 144
                 566666666664333333349*************88876 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.6e-05
                 E-TT-EE-TT-EE.S.......EEE-TT-EE-TT-EE- CS
   Hexapep_2   4 IGdnCliGanagi.G.......vslGdncvvgaGvvit 33 
                 IG+ ++iG n+   +       + +G+++++ +Gvv+ 
  CCG91843.1 143 IGKESIIGENSFLyPhvtvrerTVIGKRVILHSGVVVG 180
                 6666666666663323333345**************95 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.00059
                 S.EEE-TT-EE-TT-EE- CS
   Hexapep_2  17 G.vslGdncvvgaGvvit 33 
                 G v++ d++ +ga+ +i+
  CCG91843.1 200 GiVQIDDDVEIGANTTID 217
                 5599***********998 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 1.3e-05
                 .EEE-TT-EE-TT-EE.S.EEE-TT-EE- CS
   Hexapep_2   1 pviIGdnCliGanagi.G.vslGdncvvg 27 
                 +v IG+n++i a  gi G +slG+ ++++
  CCG91843.1 241 NVVIGKNSIIAAQTGIsGsTSLGNQVTLA 269
                 699*************956*****99986 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.0066
                 EE.S.EEE-TT-EE-T CS
   Hexapep_2  15 gi.G.vslGdncvvga 28 
                 gi G +++Gd++++ a
  CCG91843.1 273 GIaGhIHIGDGATITA 288
                 5667899****99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2424.37
//
Query:       CCG91844.1  [L=438]
Description: Homoserine dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-56  188.4   0.1    3.3e-55  186.6   0.0    1.9  3  Homoserine_dh    Homoserine dehydrogenase
    1.8e-17   64.1   0.1    3.3e-17   63.2   0.1    1.5  1  NAD_binding_3    Homoserine dehydrogenase, NAD binding domain
    5.3e-06   26.1   0.0    1.5e-05   24.7   0.0    1.9  1  ACT              ACT domain
    2.5e-05   25.1   0.0    6.3e-05   23.8   0.0    1.7  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
  ------ inclusion threshold ------
      0.046   14.0   0.1       0.24   11.7   0.1    2.2  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.056   14.0   0.0       0.17   12.5   0.0    1.8  1  ACT_4            ACT domain
       0.13   12.8   0.0        9.1    6.9   0.0    2.4  2  AAA_assoc_C      C-terminal AAA-associated domain


Domain annotation for each model (and alignments):
>> Homoserine_dh  Homoserine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.4   6.1e+03      77      94 ..      33      61 ..      27     117 .. 0.54
   2 !  186.6   0.0   1.3e-58   3.3e-55       1     173 []     137     317 ..     137     317 .. 0.98
   3 ?   -2.7   0.0       1.8   4.7e+03      35      53 ..     403     421 ..     395     425 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.4
                   HCTTT--GGGSEE--ST............T CS
  Homoserine_dh 77 afgleveledvevegis............k 94
                     g+ +e++ v v++++            +
     CCG91844.1 33 S-GKIIEIKRVAVRSLQkgynlglpkeilT 61
                   4.6666777777777665555555553331 PP

  == domain 2  score: 186.6 bits;  conditional E-value: 1.3e-58
                    --HHHHHHTCTTSEEEEEEEE--HHHHHHHHHHHCHTT-HHHHHHHHHHTTSS-SSTHHHHTTHHHHHHHHHHHHHHCTTT--GGGSEE--STTS- CS
  Homoserine_dh   1 PiiktlkeilsgdritrieGilngtlnyiltemeeegasfsevlkeaqelGyaeaDptdDveGlDaarKlailarlafgleveledvevegisklt 96 
                    P+++++++ l ++r   i Gi+ngt+nyiltem+++++ ++e+lk+a+elGyaea+ + Dv+G D+a+K+ail  l +    ++e++++ gi++++
     CCG91844.1 137 PLLQAIQDGLVANRFLMIAGIVNGTCNYILTEMTNQKSPYAEALKKAKELGYAEANEKLDVSGEDSAHKAAILCALSYRFWPKVEEIYTAGIESVD 232
                    89999*****************************98888********************************************************* PP

                    HHHHHHHHCTTEEEEEEEEE........CEEEEEEEEEETTSGGGHSSST-EEEEEEESSSEEEEEEES-SSHHHHHHHHHHHHH CS
  Homoserine_dh  97 aedikeakeegkvlklvasa........vearVkpelvpkshplasvkgsenavlvetdrlgelviqGpgaGaepTAsavlsDll 173
                    + di++a++ g+ lkl+a++        ve+rV+p+l++k+h l sv+g++nav+v++d +g+ +++G+gaG++pTAsavlsDl+
     CCG91844.1 233 PMDIQYAADLGYILKLLAIIkkhphskkVEIRVHPTLLKKDHILSSVSGAFNAVIVKGDIVGDQLFYGRGAGGDPTASAVLSDLV 317
                    ********************999999999******************************************************96 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.8
                    CHTT-HHHHHHHHHHTTSS CS
  Homoserine_dh  35 eegasfsevlkeaqelGya 53 
                    +++++f+e+++e+ +l + 
     CCG91844.1 403 AKEKDFTEACAEMSKLPFL 421
                    3456788888888887665 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.1   1.3e-20   3.3e-17       1     117 []      10     129 ..      10     129 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 1.3e-20
                    --SHHHHHHHHHHHH---S......SEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-.S--HHHHTTHHHHHHTTEEEE-S CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqse......ielelvavadrdsllskdrkallasealtldlddliahldpdvvVEc.asseavaelvlkaLkagkdvvta 89 
                    GlG++Gs+v   l+ +++         +e++ va+r+  l+k     l++e lt+d++d+++++++d vVE+ ++ +   e++++aLk+gkdvvta
     CCG91844.1  10 GLGNVGSRVWHNLLTHKKLlaeksgKIIEIKRVAVRS--LQKGYNLGLPKEILTTDWQDIVNDPEIDAVVELiGGIDISYEIITSALKKGKDVVTA 103
                    9*************99999999999999*********..8888888************************************************** PP

                    --CGGG-HHHHHHHTSSSTTS--.EE-G CS
  NAD_binding_3  90 nkgaladealyeeLreaaeangakiyve 117
                    nk++la  ++++++++ a +++++i++e
     CCG91844.1 104 NKALLA--NHGQQIANIAFEQKRRILFE 129
                    ******..*****************997 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.8e-09   1.5e-05       1      62 [.     352     415 ..     352     420 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.8e-09
                 EEEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTT..ECEEEEEEEEEEHHHHHHHHHHH CS
         ACT   1 tvlrvgvpDrPGlLarvfgaladrgiNidsieqrssedk..vagivfvvivvdeedleevleal 62 
                 +++r+ v D+PG+La ++++l++ +i i s+ q ++     +++++++v+ + e+d  e+ ++ 
  CCG91844.1 352 YYVRLNVVDKPGVLASIAQILGRKNIGISSVVQPEVSNLsqGVPLIIMVHDAKEKDFTEACAEM 415
                 799****************************998886668888888888888888877765555 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.5e-08   6.3e-05       1      90 [.       4     101 ..       4     125 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.5e-08
                   EEEEEETTSHHHHHHHHHHHHTTTTE..EEEEEECSSHHHHHHHHHHTTHE.....EESSHHHHHTCTTESEEEE-S-G.GGHHHHHHHHHHTT-EE CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrle..evvalldpdaeraeavaesfgve.....aysdleelladpeidavivatpn.gtheelakaaleagkhv 89 
                   ++v++iG+G++gs+ + +l  +++l+  +   +++++  + + + + +++        +d++++++dpeidav+  +   +  +e++  al++gk+v
    CCG91844.1   4 FNVGLIGLGNVGSRVWHNLLTHKKLLaeKSGKIIEIKRVAVRSLQKGYNLGlpkeiLTTDWQDIVNDPEIDAVVELIGGiDISYEIITSALKKGKDV 100
                   79*************99**99988889988888888888888886666555559999999*************999999889*************99 PP

                   E CS
  GFO_IDH_MocA  90 l 90 
                   +
    CCG91844.1 101 V 101
                   7 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   9.2e-05      0.24       1     100 [.       6     104 ..       6     130 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.2e-05
                      EEEE--SHHHHHHHHHHHCTCCT-G....EEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGG.GHHHHHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvda....eitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppi.ssldvlkaC 89 
                      v +iG G+vG+ v + l+ h+++ a    +i+ + r   +   l +k  +  + ++ l+ + ++ v ++   e d+vv l++ i  s +++  +
       CCG91844.1   6 VGLIGLGNVGSRVWHNLLTHKKLLAeksgKIIEIKRVAVR--SL-QKGYNLGLPKEILTTDWQDIVNDP---EIDAVVELIGGIdISYEIITSA 93 
                      679*******************988875555555554444..44.344666666777776666653344...5599999999999999999999 PP

                      HHHT-EEEESS CS
  Sacchrp_dh_NADP  90 ietgvhyvdts 100
                      +++g ++v++ 
       CCG91844.1  94 LKKGKDVVTAN 104
                      99999999844 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.6e-05      0.17       9      42 ..     354     387 ..     350     406 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.6e-05
       ACT_4   9 leveaedrkglLaditqviseekanivsvnaktr 42 
                 +++++ d++g+La+i+q++  +++ i+sv   + 
  CCG91844.1 354 VRLNVVDKPGVLASIAQILGRKNIGISSVVQPEV 387
                 567889*********************9976664 PP

>> AAA_assoc_C  C-terminal AAA-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0035       9.1      46     105 ..      20      79 ..       4      82 .. 0.86
   2 ?    3.2   0.0     0.046   1.2e+02      32      74 ..     104     147 ..     100     151 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0035
  AAA_assoc_C  46 adikerKeifreqllklvplaaairrvLderenkrlpeerfldeLeeklseeeaertlet 105
                   +  + K++++e+  k++ +++   r L++  n  lp+e + +  ++ ++++e++  +e 
   CCG91844.1  20 HNLLTHKKLLAEKSGKIIEIKRVAVRSLQKGYNLGLPKEILTTDWQDIVNDPEIDAVVEL 79 
                  467789**************************************9999999999887765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.046
  AAA_assoc_C  32 gdielTelGrkfveadikerKe.ifreqllklvplaaairrvLd 74 
                   +  l + G+++++   +++++ +f+ ++   +pl +ai++ L 
   CCG91844.1 104 NKALLANHGQQIANIAFEQKRRiLFEASVAGGIPLLQAIQDGLV 147
                  56678899999999887665551688899999******998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2780.86
//
Query:       CCG91845.1  [L=366]
Description: threonine synthase,pyridoxal-5'-phosphate-dependent enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-73  246.8   0.2    3.6e-73  246.6   0.2    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.6   0.2     2e-77   3.6e-73       1     294 []      30     327 ..      30     327 .. 0.96

  Alignments for each domain:
  == domain 1  score: 246.6 bits;  conditional E-value: 2e-77
                 GGGCSSS--EEEECCTCCCCCCE..EEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-H.HHHHH CS
        PALP   1 ltlgigpTPlvrlprlskelgvp..lflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadasp.ekval 96 
                 +tl +g+TPl+++ +l + +g    +++K+E+lnpt SfKdRg++ +++++ e+  ++tv++as+GN+++++Aa+aa++ lk+ +++p+++ + +k+ +
  CCG91845.1  30 ITLLEGNTPLIPSTKLPQLFGKGlkVYFKYEGLNPTASFKDRGMVVAITKALEQ-NKRTVICASTGNTAASAAAYAARADLKCFVFLPRGKIAlGKLSQ 127
                 57899************99999999*************************9999.9************************************88***** PP

                 HHHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHH....HSTT....-EE CS
        PALP  97 lrllGaevvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglke....rrpd....vrv 187
                   ++Gae+ve++g++d++++++ +laa  +++ lv++  np +ieg++t+++Ei++ lg++pd  ++pvG++g+i++ ++g+ke    +       +++
  CCG91845.1 128 AIMHGAEIVEIDGSFDDTMRMVIKLAALRPEIELVNSV-NPSRIEGQKTAAFEICDTLGDAPDIHILPVGNAGNITAYWKGYKEyhesK--LssklPQM 223
                 **************************************.9********************************************86552..05568*** PP

                 EEEEECTTCGGTTCCS..S.SS..B.SSS.CCSTCS..CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCT CS
        PALP 188 igvepegsdalarslragrrvtvpvsdtiadglavg..spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelk 283
                 +g ++eg++++ ++        ++ ++tia+++++g  ++  +a+e+++++ ++i +v+d e++ea + la++egi+vep+sa++la+  k  + + l+
  CCG91845.1 224 LGFQAEGAAPIVKGK------IIENPTTIASAIRIGnpASWKKAVEAARESSGKIDSVTDSEIIEAYQFLATKEGIFVEPASAVSLAGFlKICKENTLA 316
                 ***************......88889**********87777899******************************************************* PP

                 TCEEEEEEE-B CS
        PALP 284 egdrvvviltg 294
                 ++++vv+ ltg
  CCG91845.1 317 KNSTVVMTLTG 327
                 *********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2575.78
//
Query:       CCG91846.1  [L=455]
Description: 3-isopropylmalate dehydratase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-79  267.0   0.0    3.6e-77  260.3   0.0    2.1  1  Aconitase  Aconitase family (aconitate hydratase)
  ------ inclusion threshold ------
       0.14   11.9   0.0       0.54    9.9   0.0    1.9  2  LodA_C     L-lysine epsilon oxidase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.3   0.0     4e-81   3.6e-77      17     461 .]      25     446 ..       5     446 .. 0.79

  Alignments for each domain:
  == domain 1  score: 260.3 bits;  conditional E-value: 4e-81
   Aconitase  17 v.pdrvllqdvtgvqalvdlaaa...reavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernk...eryefLksaakaf.girvvppg.. 105
                 v  d +l++dv g+ ++  ++     + +v+++ + + + dh + ++   d +     + + ++ ++f++++     y+ +++      + ++ p++  
  CCG91846.1  25 VeTDILLTHDVCGPGTIGVFKREfgkNARVWNPYKIVIMPDHYIFTS---DSLS----NRNVDILRAFSKEQglpYFYDVIDDP---NgNWKFDPLKgp 113
                 24788888888888888888554333555688888888888888888...4444....33344445555533000333333322...234444444444 PP

   Aconitase 106 .........qGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavigklrkk 195
                          +G++H   +E+g + pg+++ gtDSHT+++g++  +a+G+G ++a  v+ + +l +k+p ++++ l+G+l++gv akDl+l++ig+++ +
  CCG91846.1 114 lqrqygmhyAGVCHTALPEKGHVRPGEVLFGTDSHTCTAGAFNQFATGIGNTDAGFVMGTGKLLIKVPPTIQFYLDGELQKGVMAKDLILYIIGEIGFD 212
                 5566666689***************************************************************************************** PP

   Aconitase 196 gvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaavlveaydkaqalfelaadedaeydkvleldlstlepsvagp 294
                 g++  ++ f G+g+ sLs+edr+T+aNMa+E+GA+ g+fp d+kt++Y++  +r  +    +  +k+ +++el++d  +++   +++dls++ep+va p
  CCG91846.1 213 GATYMAMQFEGPGAFSLSIEDRMTMANMAIEAGAKNGIFPADQKTIDYVN--QRILK----NGTKKEFEVVELEKD--QKFFASYSIDLSKIEPTVAAP 303
                 **************************************************..77444....455666665556655..78******************* PP

   Aconitase 295 krPqdavplselvkkefkeelekeaaekaleyklkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkpgvktsvaPGSevvkaylea 393
                  +P ++++ +el                              +k+d a++gSCT +++ d+ a a++l+     + +   +v+t+ +P + +v ++l++
  CCG91846.1 304 PNPANRFKAKEL----------------------------ASVKIDRAYLGSCTGGKLTDFIAFASILK-----N-N-MVSVETFAVPSTPEVVDQLHK 367
                 *****9999333............................33569************************.....3.3.3347999***99999887644 PP

   Aconitase 394 .....eGlleiLekaGfevvg.agCstCig.nsdrleege...aivsssNRNFegRqgpntra.yLaSPelvvaaAlaG 461
                      + l+eiL +aG+++++ + C  C+g   d++ + +   +++ss+NRNF gR+g ++   yLaSP  v+a+A++G
  CCG91846.1 368 ielegQSLWEILVQAGVKITEnPSCAACLGgPMDTFGRVNkplVCISSTNRNFPGRMGDKASLvYLASPMTVAASAIKG 446
                 22222779**********987369******6666665444467**************9777777*************98 PP

>> LodA_C  L-lysine epsilon oxidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.19   1.7e+03     116     129 ..      84      97 ..      50     104 .. 0.66
   2 ?    9.9   0.0   6.1e-05      0.54      50      98 ..     317     365 ..     284     390 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.19
                 TTTTTS-SSTHHHH CS
      LodA_C 116 dltkrmalPWqaDf 129
                  ++k+++lP++ D+
  CCG91846.1  84 AFSKEQGLPYFYDV 97 
                 57899999999986 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 6.1e-05
                 S-HHHHHHHTTSBES--SS-SS--GGGG-GGGEEETTEE-B-SHHHHHH CS
      LodA_C  50 veeLdraslencvGgpfcpGievtwslrnpsiYaepyrikhekeeysql 98 
                   ++dra l++c+Gg++ + i +  +l+n+++  e + + +++e  +ql
  CCG91846.1 317 SVKIDRAYLGSCTGGKLTDFIAFASILKNNMVSVETFAVPSTPEVVDQL 365
                 5679***************************999999998888666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3138.18
//
Query:       CCG91847.1  [L=113]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-05   23.7   0.0    6.9e-05   23.1   0.0    1.3  1  SH3_3     Bacterial SH3 domain
    0.00047   20.0   0.0    0.00072   19.4   0.0    1.3  1  SH3_9     Variant SH3 domain
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.018   14.7   0.0    1.2  1  SH3_2     Variant SH3 domain


Domain annotation for each model (and alignments):
>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.1e-08   6.9e-05      18      55 .]      60      96 ..      59      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.1e-08
       SH3_3 18 tlpyGekVevleetgggeWykvrtddgteGwvssgyls 55
                +l++G+++++l++tg+g +++v+t  g++G+v  +yl+
  CCG91847.1 60 YLDKGTRLKLLGSTGEG-FVRVETTRGKKGFVPVSYLE 96
                689**************.******************96 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-07   0.00072      15      49 .]      61      96 ..      58      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.2e-07
       SH3_9 15 LqrGDvitvieesedgWlegsl.tGrtGlvPanyve 49
                L++G ++ +++ + +g+++++   G++G+vP++y+e
  CCG91847.1 61 LDKGTRLKLLGSTGEGFVRVETtRGKKGFVPVSYLE 96
                5677788899999********77***********97 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.1e-06     0.018      20      57 .]      63      98 ..      60      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.1e-06
                TTEEEEEE..EEEECTTEEEEEE.CCCEEEEEGCGEEEE CS
       SH3_2 20 kGdvikvlslgskdsdgwwegev.gGrvGlfPsslveeq 57
                kG  +k+l   ++  +g+ ++e+ +G++G++P s++e+q
  CCG91847.1 63 KGTRLKLL---GSTGEGFVRVETtRGKKGFVPVSYLEKQ 98
                66677888...6777799***999************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 805.75
//
Query:       CCG91848.1  [L=788]
Description: Cation transport ATPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-45  154.4   0.2    2.2e-45  154.4   0.2    2.0  2  E1-E2_ATPase     E1-E2 ATPase
    2.4e-26   93.3   0.1    3.6e-26   92.8   0.1    1.3  1  Hydrolase        haloacid dehalogenase-like hydrolase
    7.2e-08   32.0   0.0    2.4e-07   30.4   0.0    1.9  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    6.9e-07   29.3   1.1    0.00046   20.0   0.3    2.2  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.051   14.0   0.0       0.11   12.9   0.0    1.5  1  HAD              haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.2   6.2e-49   2.2e-45       3     181 .]     108     285 ..     106     285 .. 0.97
   2 ?   -4.1   0.3       2.7   9.7e+03     122     135 ..     761     774 ..     754     780 .. 0.55

  Alignments for each domain:
  == domain 1  score: 154.4 bits;  conditional E-value: 6.2e-49
                   S--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTST CS
  E1-E2_ATPase   3 lpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkiar 99 
                   l+p ++v+rdg +++i+akelv+GD+vll++gd+vpaD ++++g+ ev+esa+TGEslp + + ++++ sG++v sg+a+++V+atg +t +gk +r
    CCG91848.1 108 LSPDVRVLRDGVWTTIPAKELVCGDLVLLRSGDIVPADLQLIDGEIEVNESAITGESLPRTAQPEERLLSGSFVESGQARGIVIATGAKTHFGKTTR 204
                   57889******************************************************************************************** PP

                   TS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT CS
  E1-E2_ATPase 100 lveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrlakk 181
                   l+e a s  ++ qk + +++k lv v  l+++l+fl+ +++  +l + l  al++l+a++P  Lp +++la+alg ++la+k
    CCG91848.1 205 LIEIA-SPPSEAQKVIFNIVKALVYVDSLLIALIFLYGMIKMAPLSFLLPYALVILIASVPVTLPSVFTLATALGSKELAEK 285
                   *****.9*******************************9999999788888****************************986 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.7
                   HHHHHHHHHHHHHH CS
  E1-E2_ATPase 122 lvpvvlliallvfl 135
                   l+++v++i+l++f+
    CCG91848.1 761 LMAIVIAILLYFFI 774
                   44444444444444 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.1     1e-29   3.6e-26       1     209 [.     301     554 ..     301     555 .. 0.79

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 1e-29
                 SSEEEEESBTTTBCHHHHHHHHHHHH.....CHHHHHHHHHH......HHCHHHHHHHHHHHHH....HHHH.HHHHHETTTE................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxx......xxxxxxxxxxxxxxxx....xxxx.xxxxxxxxxx................ RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa.....alalaaaletg......sehpigkalvaaakar....sgal.tgfatfigrg................ 67 
                 ++ ++ Dk+GTLt  e  ++ + + a      l l a    +       e pi ka+ ++ +++    ++ l  +f+++i                   
  CCG91848.1 301 MDILLVDKTGTLTCNELKLHILKPFApcteqNLLLFA----AlcsdplGENPIDKAILEKVDELhlstKE-LgLDFQHYIPADpktkmakaiykdkegr 394
                 67899***********777777777764433344444....34455999**************9666422.2355665433336666666666667777 PP

                 ..HHHHTHHHHHHHH...HCHHHHHHHHHHHHHHCHHHHHH.....TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT CS
                 ..xxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  68 ..ayaigkpewltal...dippdlgaaigsaqsqgrtvall.....qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG 156
                    +++g++  + +    d ++ l++a + + +  r+ a+       + +l+++ ++dp  ++ +a+e++a++k  gi+vv++tgd++ ta+++ +q+G
  CCG91848.1 395 qfIVLKGSVSTVLKTigiDSTEVLDQAKTLETDGSRILAVAygspaANTLLGLIGFSDP--LRNDAKELIAKIKWLGIKVVMVTGDQEFTAKSIGKQVG 491
                 798888888888888888888888888888888888887779999977***********..************************************** PP

                 ..GGGE.SEEEEHHCES........STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHT CS
                 ..xxxx.xxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 157 ..ddyf.daviasdiet........vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaA 209
                   + +    +++s i+         +a++ pe+k ++++ +q k + + m GDgvnDa+al++A
  CCG91848.1 492 igE-HSiTLSDSSAIDPqqienydiIAGVFPEDKYRIVQAFQKKNHVTGMTGDGVNDAPALRQA 554
                 963.3335555555555667889***************************************99 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   6.6e-11   2.4e-07      18      67 ..      17      65 ..      11      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 6.6e-11
  Cation_ATPase_N 18 enGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaal 67
                       GL+ aea++rl   GpN+  ++kk+s + ++l++f+ p++++L++  l
       CCG91848.1 17 YLGLSWAEAKKRLLAEGPNTP-PEKKESSLLLFLSKFWAPVPWMLEITIL 65
                     56*******************.99999999****************9766 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1   0.00045       1.6      18      79 ..     456     520 ..     447     541 .. 0.73
   2 !   20.0   0.3   1.3e-07   0.00046     205     244 ..     537     576 ..     524     578 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00045
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEE.GGGTEE..ECTTTEEEEE--B CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelgldlpvia.lNGali..ddekgkilyksti 79 
                  + +ke i+k+k  gikvv  TG +  +++++ +++g+  + i+ +  + i  ++ ++  + +  +
   CCG91848.1 456 NDAKELIAKIKWLGIKVVMVTGDQEFTAKSIGKQVGIGEHSITlSDSSAIdpQQIENYDIIAGVF 520
                  56899********************************9888874445555554444444444444 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1.3e-07
                  GEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE- CS
  Hydrolase_3 205 eviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtk 244
                   +   GDg ND + L +a +g+A+ na + +k+aA+ + +
   CCG91848.1 537 VTGMTGDGVNDAPALRQAQVGIAVSNAVDVAKSAASLILT 576
                  55567******************************99875 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     3e-05      0.11      89     188 .]     457     552 ..     435     552 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3e-05
         HAD  89 galellaahraaGdrvvvvSgglrplvepllaelgadevlat.elevdd..rltge.lglegk..pvrgegkvaalrewlaaegegidleevvayGDsp 181
                 +a+el+a+ +  G++vv+v+g  ++ ++ + +++g    +++ ++   d   ++ + ++ ++    v+ e+k + +++  ++++++ +  +    GD++
  CCG91848.1 457 DAKELIAKIKWLGIKVVMVTGDQEFTAKSIGKQVG----IGEhSITLSDssAIDPQqIENYDIiaGVFPEDKYRIVQA--FQKKNHVTGMT----GDGV 545
                 789999999999***********************....888544445577777775444443114566999999999..99998886655....**** PP

         HAD 182 sDlpllr 188
                 +D p+lr
  CCG91848.1 546 NDAPALR 552
                 *****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 5268.65
//
Query:       CCG91849.1  [L=120]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.06   13.1   3.7        2.7    7.8   0.0    2.3  2  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal
       0.63    9.4   0.1       0.63    9.4   0.1    2.6  2  zf-TFIIB        Transcription factor zinc-finger


Domain annotation for each model (and alignments):
>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0003       2.7      20      31 ..      49      60 ..      40      75 .. 0.81
   2 ?    5.1   1.8     0.002        18      39      52 ..      98     111 ..      83     117 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0003
  zinc_ribbon_10 20 ryalICskChsh 31
                     +a+IC kC+ +
      CCG91849.1 49 TFAMICGKCKGV 60
                    68*******965 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.002
  zinc_ribbon_10  39 eleevkyrCpkCga 52 
                     ++ +  + C++Cg+
      CCG91849.1  98 KSHKHLFLCSHCGE 111
                     33344567777765 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1     7e-05      0.63      20      29 ..      52      61 ..      41      63 .. 0.91
   2 ?   -0.0   1.9     0.063   5.6e+02      10      26 ..      95     110 ..      83     110 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 7e-05
    zf-TFIIB 20 dyCpqCrGvW 29
                  C +C+GvW
  CCG91849.1 52 MICGKCKGVW 61
                57******** PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.063
    zf-TFIIB  10 eeserggveidyCpqCr 26 
                 +e+++++ +++ C +C+
  CCG91849.1  95 KETKSHK-HLFLCSHCG 110
                 3444444.889999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 884.17
//
Query:       CCG91850.1  [L=57]
Description: hypothetical protein MFUM_230029 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       149  (0.00831056); expected 358.6 (0.02)
Passed bias filter:                      129  (0.00719505); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 405.63
//
Query:       CCG91851.1  [L=102]
Description: transposase (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-14   54.3   0.0    1.4e-14   54.2   0.0    1.0  1  Y1_Tnp    Transposase IS200 like


Domain annotation for each model (and alignments):
>> Y1_Tnp  Transposase IS200 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0     8e-19   1.4e-14       5     103 ..       2     100 ..       1     102 [] 0.98

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 8e-19
      Y1_Tnp   5 kyhivlvtkyRrkvltgeveerlkeiikeiaekkevkilelelmpDHvHllvelppklsiskivkalkgassrlinkefpelkkkklkkeslWqrgYfv 103
                  yh+vlv kyR+k +t  +   ++++ k   e  + +++e+++++D +Hll+ lpp+l+ s +vk+lk +s + +++ef+    + ++k+ lW r ++v
  CCG91851.1   2 PYHLVLVSKYRHKAITLLMLGCVHSMAKMRWEGEGGQLIEFKGESDPLHLLLALPPNLEHSCFVKSLKTTSFNPFRREFATAAGHFYRKPVLWIRPFCV 100
                 6**********************************************************************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 758.43
//
Query:       CCG91852.1  [L=49]
Description: hypothetical protein MFUM_230031 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       174  (0.00970495); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.41
# Mc/sec: 361.78
//
Query:       CCG91853.1  [L=56]
Description: hypothetical protein MFUM_230032 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 402.55
//
Query:       CCG91854.1  [L=36]
Description: hypothetical protein MFUM_230033 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       150  (0.00836633); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 300.12
//
Query:       CCG91855.1  [L=57]
Description: hypothetical protein MFUM_240001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.3   3.3      0.016   15.2   3.3    1.1  1  Lamprin   Lamprin


Domain annotation for each model (and alignments):
>> Lamprin  Lamprin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   3.3   8.7e-07     0.016      46      97 ..       2      54 ..       1      57 [] 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.7e-07
     Lamprin 46 gglgygglgvaglgvag.lgygglgypgaalggvythhaaglvhpygglgyha 97
                ggl yg l ++ lg+   lg   lg  g+    +yt h+ g  +   +lgy +
  CCG91855.1  2 GGLSYGELIIGRLGLNSlLGSVVLGVEGSIKKIIYTRHTIGCGFFGQSLGYGS 54
                8999999999999987636999******************9988888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       187  (0.01043); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 480.32
//
Query:       CCG91856.1  [L=217]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.15   11.7   0.0       0.29   10.8   0.0    1.4  1  Phage_P2_GpU  Phage P2 GpU


Domain annotation for each model (and alignments):
>> Phage_P2_GpU  Phage P2 GpU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.6e-05      0.29       5      37 ..     180     212 ..     177     214 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.6e-05
  Phage_P2_GpU   5 Felntlafqelqrstsarwaeherlggrpalqf 37 
                   F l+   +q +  ++s+rw++  r++++   q+
    CCG91856.1 180 FRLEPPGYQRVGNTVSWRWSKIPRIDEKIHIQW 212
                   899999**********************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1574.18
//
Query:       CCG91857.1  [L=411]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0035   18.3   0.2      0.032   15.3   0.1    2.6  2  RNase_J_C       Ribonuclease J C-terminal domain
  ------ inclusion threshold ------
      0.013   15.5   1.6      0.024   14.6   0.2    2.0  2  Cofac_haem_bdg  Haem-binding uptake, Tiki superfamily, ChaN


Domain annotation for each model (and alignments):
>> RNase_J_C  Ribonuclease J C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   3.6e-06     0.032      12      67 ..      41      95 ..      27      97 .. 0.84
   2 ?   -0.7   0.0      0.34     3e+03      24      53 ..     187     219 ..     180     222 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.6e-06
   RNase_J_C 12 vkeseeLieeakkvvretieealeekesdwnelkrkirealkkflykktkrrPmIl 67
                +++ + Li+    +++++ e+a+e+ + d++e ++++ +  +k+lyk tkr+P  l
  CCG91857.1 41 SRDFNPLIQHFMRKASQIYEKANEH-KLDMQEAEKRVDRLEAKLLYKMTKRNPALL 95
                4667799999999999999998886.8**************************765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.34
   RNase_J_C  24 kvvretieealee...kesdwnelkrkirealk 53 
                 + ++e +++a ++   ++s  ++lk+k+ eal+
  CCG91857.1 187 QPIEEYLKKARKSallEKSPKESLKKKLAEALQ 219
                 445555555544422234445555555555554 PP

>> Cofac_haem_bdg  Haem-binding uptake, Tiki superfamily, ChaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   2.7e-06     0.024      10      74 ..       7      69 ..       3      91 .. 0.77
   2 ?   -1.0   0.1      0.16   1.4e+03      85     119 ..     136     176 ..     131     248 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.7e-06
                    EEEEEE-TT-HHHHHHHHHHHHHH.HTT--EEEEEEEEEGGGHHHHHHHHHT...HHH......TT- CS
  Cofac_haem_bdg 10 vvllGEkHdnpdhhalqlellkaLaaagarlalglEmferdqqpaLdrylag..kideeellealew 74
                    +vl+GE H++ +h++l  ++l +L ++g  ++++lE ++rd++p+++ ++++  +i e++ + +l+ 
      CCG91857.1  7 AVLVGEIHTKNHHKSL-IKTLPQLDQQG--FVIALE-LSRDFNPLIQHFMRKasQIYEKANEHKLDM 69
                    69******98766555.78888995445..9*****.79***********88775555555554444 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.16
                     THHHHHHHHTS......S--EEEEE--HHHHHHHHTT.... CS
  Cofac_haem_bdg  85 Yrpllefarea......glplvalnlprelvrkvareGles 119
                     Y+++++ a ++      +l+++a++++++  ++ a++G   
      CCG91857.1 136 YADVIREAVKHnvlnhgNLQVYAVDISTKELKEQAKKGNLF 176
                     55555555555555555666666666666666666666433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1157  (0.0645323); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 2742.78
//
Query:       CCG91858.1  [L=218]
Description: hypothetical protein MFUM_240004 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1463.03
//
Query:       CCG91859.1  [L=225]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1755.79
//
Query:       CCG91860.1  [L=39]
Description: hypothetical protein MFUM_240007 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 306.29
//
Query:       CCG91861.1  [L=279]
Description: D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-40  139.7   0.0    1.3e-40  139.4   0.0    1.0  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase
    6.9e-14   51.9   0.0    1.3e-13   51.1   0.0    1.4  1  Beta-lactamase2  Beta-lactamase enzyme family
    5.9e-05   22.4   0.0    0.00087   18.6   0.0    2.1  2  Transpeptidase   Penicillin binding protein transpeptidase do
    0.00019   20.3   0.8    0.00027   19.8   0.1    1.5  2  Peptidase_S13    D-Ala-D-Ala carboxypeptidase 3 (S13) family


Domain annotation for each model (and alignments):
>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.4   0.0   2.9e-44   1.3e-40      10     240 ..      37     260 ..      29     261 .. 0.88

  Alignments for each domain:
  == domain 1  score: 139.4 bits;  conditional E-value: 2.9e-44
                    --SSSEEEEEETTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCSGTTSSTTS-TTT-EEEHHHHHHHHHCC-- CS
  Peptidase_S11  10 eiaaksailvdantGkvLyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgnnkevsniflkkgskvsvkdLlegllvssg 105
                    +++a++a++ d +  k L +++ad +  +AS tK+mTa++ +e +   kl+ + +++ ++   +         +fl +g+k+svk Ll+++l++s 
     CCG91861.1  37 NLQARAALVWDVDQKKDLFSRDADSQYYPASTTKIMTALITYEKT---KLEGTVTIQPGDLGLSEC----PVVRFL-PGEKYSVKSLLYAMLLASS 124
                    789**************************************9998...666666666666555555....678889.9****************** PP

                    HHHHHHHHHHHHSSHHHHHHHHHHHHHHTT-TT-B-SSSSSTSHTTCBB-HHHHHHHHHHHHHH.HHHHHHGGGESEEEET.TECTEEEESSTGGG CS
  Peptidase_S11 106 NdAavalAekiaGsekaFvkmMnkkakelGlkntkfvnptGLdnenqvssArdlailakallkd.lpeelkitkeksltfn.gikklnyknknkll 199
                    N+Aa+alA + +G+  aFv+ Mnkka+ lG   t+f+np+G++ ++++ +A dl  + +a l   ++ +++ + +++l +  g+    ++ +nkll
     CCG91861.1 125 NEAAMALARHSGGTVMAFVDEMNKKARTLGCLHTHFQNPHGISYPGHMTCANDLRKIFEAFLAVpDLVKIAASVNYELFTVeGKPVQYLMSTNKLL 220
                    ***********************************************************999877666666666665544437777778999***9 PP

                    GTTTSEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEES CS
  Peptidase_S11 200 yrktlnvdglktGytkkAgeclvatavenqmrlisVvlnak 240
                      ++  +   ktG+t +  +++v+  ++++++li V+l+ +
     CCG91861.1 221 DLYQ-GMVAGKTGWTPESRNTFVGLCQRKEKKLIIVILDSP 260
                    9988.66777****************************975 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   2.8e-17   1.3e-13       4     202 .]      52     256 ..      49     256 .. 0.79

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 2.8e-17
                      TSEEEESTTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHHHT.SSSTSGGGSTTSEEEHHHHHHHHHHTT-HHHHHHHHHHH..... CS
  Beta-lactamase2   4 geelgvnadeefpaaStiKvpillalleavlegklslderltltaediv.ggsgilqklpgktlslrdlltlmiavSDNtAtnlLidrl..... 91 
                      + +++ +ad +++ aSt K++ +l ++e     k +l+ ++t+++ d+  ++ ++ ++lpg ++s++ ll++m+  S N A+ +L ++      
       CCG91861.1  52 KDLFSRDADSQYYPASTTKIMTALITYE-----KTKLEGTVTIQPGDLGlSECPVVRFLPGEKYSVKSLLYAMLLASSNEAAMALARHSggtvm 140
                      567899*****************55555.....888************967***********************************99844444 PP

                      T.HHHHHHHHHHCTHTTSB--SHTTCCHHHTTSSTTEE-HHHHHHHHHHHHHT.TSSHHH.....HHHHH..HHT-STTTTTTTTTT....TTS CS
  Beta-lactamase2  92 g.leavnawlkelglretrlrrklpdleaadkdkrntttardlarllealarg.ellspe.....ellei..lsnqqfrdrlaaglp....egv 172
                        ++++n+ +++lg+ +t+++++  + +     +  +t+a+dl +++ea     +l++ +     e   +  ++    +++++++       + 
       CCG91861.1 141 AfVDEMNKKARTLGCLHTHFQNPH-GISY----PGHMTCANDLRKIFEAFLAVpDLVKIAasvnyE---LftVEGKPVQYLMSTN-KlldlYQG 225
                      4569*****************985.5544....899************977761455544333322...1333333333333322.12346677 PP

                      EEEEEEEEETTEEEE.EEEEEETTEEEEEEE CS
  Beta-lactamase2 173 rvahKtGeldgvrhd.vGivyadgrpyvvav 202
                       va KtG+ ++ r+  vG+ + ++++ ++++
       CCG91861.1 226 MVAGKTGWTPESRNTfVGLCQRKEKKLIIVI 256
                      9*************98899999999999986 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.9e-07   0.00087      14      72 ..      25      90 ..      24     181 .. 0.80
   2 ?    2.1   0.0      0.02        92     241     285 ..     226     257 ..     193     269 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.9e-07
                    EEEEEESE-TTTHHCC.........TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEET CS
  Transpeptidase 14 lamaskpsydpnakvg.........kneplanravqsqyePGStfKvvtaaaaleagvikpdetldds 72
                    lam ++ ++ +++ +          ++++l +r ++sqy P+St K++ta++ +e+ ++++  t++ +
      CCG91861.1 25 LAMGEEATFIEKNLQAraalvwdvdQKKDLFSRDADSQYYPASTTKIMTALITYEKTKLEG--TVTIQ 90
                    5666666666555555677788888899999999*********************997764..44444 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.02
                     --EEEEEEEEECSSSTTSEEEEEEEEEEEEEESTTS-SEEEEEEE CS
  Transpeptidase 241 kvagKTGTAevagkkgngkkegakiswfvgyapadnpkyavavli 285
                      vagKTG++                 +fvg  + + +k+++++ +
      CCG91861.1 226 MVAGKTGWTPESR------------NTFVGLCQRKEKKLIIVI-L 257
                     5899999986553............278888887777775544.4 PP

>> Peptidase_S13  D-Ala-D-Ala carboxypeptidase 3 (S13) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1     6e-08   0.00027      16      54 ..      39      76 ..      30      83 .. 0.87
   2 ?   -3.0   0.1       0.5   2.2e+03     276     298 ..     114     136 ..     112     148 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 6e-08
                   TSEEEEEEEETTTTEEEEEESTTSEB--GGGHHHHHHHH CS
  Peptidase_S13 16 gavagvvvqdaetgkelydhqgdtpllPAStqKllTAaa 54
                   +a a++ v d++++k l+++++d +  PASt K++TA+ 
     CCG91861.1 39 QARAAL-VWDVDQKKDLFSRDADSQYYPASTTKIMTALI 76
                   666777.******************************86 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.5
                    HHHHHHHHHT-HHHHHHHHHHHH CS
  Peptidase_S13 276 ellkkmmkkSdNliAesllreva 298
                     ll  m+ +S N  A +l r+ +
     CCG91861.1 114 SLLYAMLLASSNEAAMALARHSG 136
                    67888999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1953.36
//
Query:       CCG91862.1  [L=169]
Description: Uri superfamily endonuclease (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-19   70.0   0.0    2.8e-19   69.4   0.0    1.2  1  DUF123    Domain of unknown function DUF123


Domain annotation for each model (and alignments):
>> DUF123  Domain of unknown function DUF123
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   1.6e-23   2.8e-19       3      94 .]      58     151 ..      57     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 1.6e-23
      DUF123   3 lkkgvylYvGsalgsgglasRvkrHaslskkkekklhWhiDyLleseeaelaevvvaseerlEcalaeal.e...aeapvagfGasDck..cesHLlk 94 
                 +++g+y+Y Gsa g+ggl+sR++rH+s+ k    + hWhiD L+ ++++    ++ + +  lEc l++ l +    +ap++gfG++Dc+  c sHLl+
  CCG91862.1  58 IAEGWYCYCGSARGNGGLRSRLSRHISVFK----TAHWHIDLLTPQASFVAICLYERLTPFLECLLSQGLiHfygLRAPLPGFGSTDCQkkCISHLLY 151
                 579**********************98887....6*********88877777777789999*********66765445**********87799***86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1106.61
//
Query:       CCG91863.1  [L=43]
Description: hypothetical protein MFUM_240010 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 319.89
//
Query:       CCG91864.1  [L=186]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0098   15.9   0.2      0.024   14.7   0.1    1.7  2  B1        Protein L b1 domain


Domain annotation for each model (and alignments):
>> B1  Protein L b1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.47   8.5e+03      25      38 ..      26      39 ..      11      50 .. 0.55
   2 !   14.7   0.1   1.3e-06     0.024       9      50 ..     106     148 ..     104     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.47
          B1 25 efkGtfaeataeay 38
                ++  ++ +++ +a 
  CCG91864.1 26 TLPNAYSKSVKDAM 39
                44445555555554 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.3e-06
          B1   9 tikanlifadGktqtaefkGtfaeataeayryadllkke.nGe 50 
                 t k+n  f   k+   ++   f+ a aea  y dllkke +G+
  CCG91864.1 106 TKKTNRSFYRTKMEGPTYNELFDSAHAEALSYRDLLKKEsKGK 148
                 668888899999999999********************82455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1011  (0.0563891); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1442.19
//
Query:       CCG91865.1  [L=485]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-27   95.6   0.0    5.5e-27   95.2   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    8.8e-24   84.5   1.2    2.8e-23   82.9   1.2    1.9  1  Glyco_trans_2_3  Glycosyl transferase family group 2
    3.4e-21   75.8   0.0    5.7e-21   75.1   0.0    1.3  1  Glycos_transf_2  Glycosyl transferase family 2
    5.1e-15   55.4   0.0    8.5e-15   54.6   0.0    1.3  1  Glyco_transf_21  Glycosyl transferase family 21
     0.0041   15.7   1.5      0.019   13.5   0.2    2.0  2  Cellulose_synt   Cellulose synthase


Domain annotation for each model (and alignments):
>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.0   1.5e-30   5.5e-27       2     228 ..      49     276 ..      48     278 .. 0.92

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 1.5e-30
  Glyco_tranf_2_3   2 rdlavlVptfneedvlgevlesllaqeypr..vevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvll 93 
                        +++  p +ne +v++++l ++ a++yp    e+ +++d s++et + + +l a++++ + ++ + +r  + + k+ +l+ +l+ +k++++++
       CCG91865.1  49 E-VTIQLPIYNEKSVVERLLYAVCAIDYPKekMEIQIIDD-STDETTAIVSGLIADFKKRGFDIQHLQRGTRAGYKAGGLQYGLEKAKGEFIAI 140
                      4.7888899*******************776677777766.56666777889******88888888888668899******************* PP

  Glyco_tranf_2_3  94 vDdDtvvePdtlkrllqffltpkvgavgtpv.fllnrstlvsalgalefaerhlrflaarralg.vltlnGsgslirrevlkelegldplfllt 185
                      +D+D +  P +lk +l++f +pk+g+v+++  +l++ s+l+++ +al+++ ++l +  +r+  + +  +nG+  ++r ++  + +g+ +   lt
       CCG91865.1 141 FDADFIPPPSFLKNTLPYFSSPKIGMVQARWgYLNRNSNLLTRCQALFLDGHFLLEQPVRYKQNlFFNFNGTAGVWRKQCIIDAGGWEG-DTLT 233
                      ****************************888577788899********************999977999********************.**** PP

  Glyco_tranf_2_3 186 dDyelglrlrragfrtayvpgaavrevfpsslkayikqrnRwv 228
                      +D++l++r+   g++ +y  + +v ++ ps + a++ q  Rw+
       CCG91865.1 234 EDLDLSYRAQFKGWKFVYTQKMVVPSELPSPIVAFRTQQHRWA 276
                      ******************************************7 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   1.2   7.7e-27   2.8e-23       2     192 ..     138     328 ..     137     387 .. 0.82

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 7.7e-27
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaaelaspevaivqgpvlvm.nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevggwdgde 94 
                      i++ DaD  +pp +l+ ++  ++sp++++vq   ++  +++n+l++++alf + +++  ++vr +   ++ + G   ++r + + ++ggw+   
       CCG91865.1 138 IAIFDADFIPPPSFLKNTLPYFSSPKIGMVQARWGYLnRNSNLLTRCQALFLDGHFLLEQPVRYKQNLFFNFNGTAGVWRKQCIIDAGGWE--G 229
                      899********************************964789************99999999998888888899******************..8 PP

  Glyco_trans_2_3  95 ssvsEDfdmglrlqrkGyrvrfvpeslvkekspltlraalrQrkRwayGc.eleklillvrllgylgsllwsalplhlallllfsllalalvll 187
                      ++++ED+d++ r+q kG+++++    +v  + p+ + a++ Q  Rwa G+ +  k++ll  l+g +++      ++hl++  + +++al+++l+
       CCG91865.1 230 DTLTEDLDLSYRAQFKGWKFVYTQKMVVPSELPSPIVAFRTQQHRWAKGAiQTAKKHLLSLLRGSFPTTSKIEGLFHLLAHSIHPIVALLVILN 323
                      8************************************************743344444333334444444444556666666666666655555 PP

  Glyco_trans_2_3 188 lllll 192
                      +++++
       CCG91865.1 324 AVTFF 328
                      55543 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   1.6e-24   5.7e-21       4     159 ..      54     213 ..      51     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 1.6e-24
                      EEESS-TTTHHHHHHHHHHH.GGCCEEEEEEEEES-SSCHHHHHGGGCH....C-TTEEEEEESSS-.HHHHHHHHHHHH--SSEEEEEESSEE CS
  Glycos_transf_2   4 iptyNeektlletlesllaq.dpypdfeiivvDDgStDetveileelak....edprvrvirreenv.GkagalnaglraatgdyilflDaDde 91 
                       p+yNe++ ++++l +++a+ +p++++ei ++DD+  Det +i+  l +    ++ ++  ++r  +   kag+l  gl++a+g++i+++DaD +
       CCG91865.1  54 LPIYNEKSVVERLLYAVCAIdYPKEKMEIQIIDDST-DETTAIVSGLIAdfkkRGFDIQHLQRGTRAgYKAGGLQYGLEKAKGEFIAIFDADFI 146
                      79******************9999999999999977.**********999*999999999999999989************************* PP

                      E-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCC CS
  Glycos_transf_2  92 pdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaa 159
                      p+p +l+ ++ ++  +  ++v + + + + +++  +r +   +    +  e+  ++k+nl+f+  + a
       CCG91865.1 147 PPPSFLKNTLPYFSSPKIGMVQARWGYLNRNSNLLTRCQAL-FLDGHFLLEQPVRYKQNLFFNFNGTA 213
                      ***************99999999999999999999998874.44444444455555555555555555 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   2.4e-18   8.5e-15      14     173 .]     118     277 ..     107     277 .. 0.85

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 2.4e-18
  Glyco_transf_21  14 gvnpKvnnllqaleaakydllvisDsdvrvkpdyLeellaaledpkvglVtslpvgsdak.glaaaleaaflntlagvlqa.kls..glgfavG 103
                       + +K   l ++le+ak +++ i D+d + +p +L++ l ++++pk+g+V++   + +++ +l ++ +a+fl  +  + q  + +   +   +G
       CCG91865.1 118 RAGYKAGGLQYGLEKAKGEFIAIFDADFIPPPSFLKNTLPYFSSPKIGMVQARWGYLNRNsNLLTRCQALFLDGHFLLEQPvRYKqnLFFNFNG 211
                      55689999********************************************77776666379999999999666444444434401445578* PP

  Glyco_transf_21 104 ksmalrreaLeaiGGfealadeLAeDyalgkllraaGlkvvlspapiaqtsvprrsslrallaRqlrWar 173
                       + ++r++ + ++GG e   d+L eD+ l+ + + +G+k+v  +++++  ++p+   + a+ ++q+rWa+
       CCG91865.1 212 TAGVWRKQCIIDAGGWEG--DTLTEDLDLSYRAQFKGWKFVYTQKMVVPSELPS--PIVAFRTQQHRWAK 277
                      *****************9..****************************999997..4556889*****97 PP

>> Cellulose_synt  Cellulose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.031   1.1e+02      22      44 ..      67      89 ..      55     103 .. 0.84
   2 !   13.5   0.2   5.3e-06     0.019     416     546 ..     226     351 ..     218     372 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.031
  Cellulose_synt 22 vlsilavdypvekvscyvsddGa 44
                    + ++ a+dyp ek+ + + dd +
      CCG91865.1 67 LYAVCAIDYPKEKMEIQIIDDST 89
                    66899*************99975 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.3e-06
  Cellulose_synt 416 GwiyGsvtedvltGfkmharGwrsvycvtkrdafkGsapinlsdrlhqvlrwalGsveiffsrnnalfagyk.kklkllerlaylnviiypftsi 509
                     Gw   ++ted+   ++   +Gw+ vy           +pi       q  rwa G+++    +  +l+ g   +  k+   +  l   i+p+ ++
      CCG91865.1 226 GWEGDTLTEDLDLSYRAQFKGWKFVYTQKMVVPSELPSPI--VAFRTQQHRWAKGAIQTAKKHLLSLLRGSFpTTSKIEGLFHLLAHSIHPIVAL 318
                     898899********************76666555555565..45556778********998888899887552556666667788999***9988 PP

  Cellulose_synt 510 fllvycilpalsllsgkfivkelsnlasiyllllfls 546
                      ++    l a++++s      +++++a i++ ++ l 
      CCG91865.1 319 LVI----LNAVTFFSAPQEKSSVQVFAGILFSVISLF 351
                     765....678888887777777777777776655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3486.97
//
Query:       CCG91866.1  [L=227]
Description: Phosphopantothenoylcysteine synthetase/decarboxylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-23   83.1   0.0    2.7e-23   82.8   0.0    1.1  1  DFP       DNA / pantothenate metabolism flavoprotein


Domain annotation for each model (and alignments):
>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   1.5e-27   2.7e-23       3     168 ..      13     190 ..      11     204 .. 0.85

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 1.5e-27
                 T-EEEEEES-EEEECCTTEEEEE----HHHHHHHHHHHHTT-EEEEEE-S-SS---T..T-EEEE--SHHHHHHHHHHHHTT-..SEEEE---S--EEE CS
         DFP   3 gkkvlvtaGpTrEaiDpVRfisNrSSGkmGyalAeaaaarGaeVtlvsgpvsletpe..gvevvkvesaeemleaveealkea..divimaAAvaDyrp 97 
                   k+lvt Gp+ E+iD+VR i+N S+G+ G++l   +   G eV  v g+ s+  p+   ++++++++ e + ++++  ++e+  ++v++aAA  D+++
  CCG91866.1  13 TMKILVTCGPSFEPIDDVRRITNFSTGRLGIQLSTFFSLSGFEVICVLGSLSTVRPQnpPFKLYSFDTNEGLWNTIKGLAQEHcfNAVFHAAALCDFQV 111
                 579***********************************************75444441268****************99988889************** PP

                 S----------.....---..----EEE---HHHHHHHC-S.S-EEEEEEE-SS....-HHHHHHHHHHHTT-SEEEEEE CS
         DFP  98 keaaeeKikke.....eeeeeltleleknpdilaelaekkkkkqllvGFaaete....ellenareklerkgldlivaNd 168
                 ke  ++  k +     ++++e  +++++ +++l++ + +  +k l+ G++ e +    ++ +++++++er g d+ v+N 
  CCG91866.1 112 KEIVDQHGKEAvktkiATDREYWMRIVPARKLLENFR-AIFPKALITGWKYEVSgnyeTVYKKGKQQIERSGSDYCVLNG 190
                 99888876643222234556677*************5.5568889*******6335669*******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1573.06
//
Query:       CCG91867.1  [L=286]
Description: Lipoyl synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-16   60.5   0.0    3.3e-16   60.1   0.0    1.2  1  Radical_SAM  Radical SAM superfamily
    2.9e-08   34.1   0.0    8.3e-08   32.6   0.0    1.8  1  LIAS_N       N-terminal domain of lipoyl synthase of Radical_


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   3.7e-20   3.3e-16       3     164 ..      61     217 ..      59     220 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 3.7e-20
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC...CCTEEEEEEECSSCHGHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekg.vkevilgggepllypdfvellerlakla...vpgiritvetngtlpdeekler 96 
                   +  C++ C+fCa++     + ++  +++ee ++ + ++ + +g +  vi +    +l +  ++++++ +++    +p  +i v ++ ++ ++e l++
   CCG91867.1  61 LGDRCTRSCRFCAVT-----TAKPLGVDPEEPKNVALAI-QAMGlKYAVITSVARDDLKDGGADIWAKTIREVralNPHTKIEVLIPDFRGNRESLRK 152
                  5679***********.....5899999************.9***66666666666666666666666666666999********************** PP

                  HHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  97 llelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleell 164
                   le+ +d++++++e++     +kl++++  +++ le+l++ ++ g+  ++++++++ Ge+++e+e +l
   CCG91867.1 153 VLEAKPDVLNHNVETVPR--LQKLVRPQARYDRSLEVLKTSAKEGFL-TKTGLMLGIGETEKEIESTL 217
                  ****************99..8**************************.*****************997 PP

>> LIAS_N  N-terminal domain of lipoyl synthase of Radical_SAM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   9.2e-12   8.3e-08      72     108 .]       8      44 ..       2      44 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 9.2e-12
      LIAS_N  72 rLPswlktkiPlGknynkikndlreLnLhtvCeeaRC 108
                 r Pswl+ kiP G+ yn i+n +    LhtvCe a C
  CCG91867.1   8 RKPSWLRAKIPGGAAYNEIRNIVSLYHLHTVCESALC 44 
                 78*********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2202.69
//
Query:       CCG91868.1  [L=49]
Description: hypothetical protein MFUM_250001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.018   15.4   1.2      0.022   15.1   1.2    1.1  1  DUF1771   Domain of unknown function (DUF1771)


Domain annotation for each model (and alignments):
>> DUF1771  Domain of unknown function (DUF1771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   1.2   1.2e-06     0.022      12      47 ..       6      46 ..       3      48 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-06
     DUF1771 12 arkrnelfekAaeAyrrGd.....gaaAkelseqGkehgek 47
                 ++r + ++k + A ++Gd     +a A+++ +qGk+ +e+
  CCG91868.1  6 RERRTSTYAKVSSAGQKGDqkaqwKALARFFLAQGKTVDER 46
                5789999******************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 345.10
//
Query:       CCG91869.1  [L=73]
Description: hypothetical protein MFUM_250002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 567.87
//
Query:       CCG91870.1  [L=255]
Description: N-acetylmuramoyl-L-alanine amidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-48  163.8   0.0    5.1e-48  163.5   0.0    1.1  1  Amidase_3  N-acetylmuramoyl-L-alanine amidase


Domain annotation for each model (and alignments):
>> Amidase_3  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   0.0   2.8e-52   5.1e-48       1     174 [.      28     200 ..      28     201 .. 0.96

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 2.8e-52
   Amidase_3   1 ividpGHGgkdpGavg....knglkEkdlnlkvalklaklLeakgaeVvltrdddksvslkeraniank.sradlfvsiHadsaanssasGvevfylek 94 
                 ++idpGHGg d+G  +     + l+Ek+l+l++a++la++L++ g++V++tr+dd++v+l+er++ian   + +++vsiH+ds +n++ +G+++++   
  CCG91870.1  28 VLIDPGHGGIDNGGSSgrkaPHYLMEKELTLDIARRLANELRKMGFRVIMTRTDDRFVDLDERVRIANGlGKRAILVSIHCDSLSNRKLRGIKTYF--- 123
                 79********998555477678899*******************************************988899**********************... PP

   Amidase_3  95 nekkaeskrlaksiqkelkkklglknrgvkeannlyvlrktkipavlvElgfisnpedakllkseeyqeklakaiaegik 174
                     a+s+ la++iq+ l+k +g k+ gv  +  l + r+++ip+vl E+gf++np ++kll s++y++ la a+a+gi+
  CCG91870.1 124 --WHANSYGLATRIQRSLVKMTGAKDLGVIRRR-LRLTRNPTIPSVLCECGFMTNPFENKLLASPSYRQTLAIALAQGIN 200
                 ..99*****************************.*********************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1781.10
//
Query:       CCG91871.1  [L=356]
Description: Beta-lactamase class C and other penicillin binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-15   57.8   0.0    1.7e-15   57.1   0.0    1.2  1  Beta-lactamase  Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   9.6e-20   1.7e-15      16     202 ..      50     230 ..      38     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 9.6e-20
                     EEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTST....TCTTGGGTTEBHHHHHTTHSSC CS
  Beta-lactamase  16 GvavavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylP....efagpgkgkiTlrdLltHtsGl 106
                      ++++++++g+v+++ ++           ++  ++ri+S tK f ++ +++  ee +l+L +pV+  +        ++  +kiT+ dLl  t G+
      CCG91871.1  50 HLSLLIIKNGQVLHEEYAP--------GNSPYLRHRIFSGTKGFWGVIAMKALEERLLSLQEPVASTIEewsnGNHNDPRKKITIYDLLHFTDGI 136
                     57899************99........*************************************666666666666666666************* PP

                     SSSSTSTTCTSHHHTHHHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHHH...TSHHHHHHHHHTTTTTTSTTEESSTTGGGGGGBEEEEE CS
  Beta-lactamase 107 pdlfasdlleeaaadaaellralatlppkyapGtkwgYsntgygllgellekvt...grsleqllreeilrpLgmkdtelgppesgdprdaagyt 198
                      + f+           ++ l+al  l+p++apGt ++Y      ++ e+l +     g++  ++++e++l pLg +  e++ +  g p +aag +
      CCG91871.1 137 EPAFYLHNDGFL----DRNLHALL-LKPVRAPGTVFTYGPSHLQIFCEILNRKLkqkGMTTSRYIEEKLLFPLGIQQVEFKKDGHGNPLLAAGFR 226
                     555444333333....45555554.456667*************99999998888999**************************99999999986 PP

                     EETC CS
  Beta-lactamase 199 gngp 202
                      +++
      CCG91871.1 227 LTPK 230
                     5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2994.32
//
Query:       CCG91872.1  [L=362]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2719.79
//
Query:       CCG91873.1  [L=130]
Description: hypothetical protein MFUM_260003 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-08   34.9   0.5    1.9e-08   34.1   0.5    1.4  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain


Domain annotation for each model (and alignments):
>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.5     1e-12   1.9e-08       1      63 [.       5      68 ..       5      70 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1e-12
  OrfB_Zn_ribbon  1 frklkeqleykakeyGikveevnpay..TSktCseCgsknkealsgrtfkCpnCgfeadrDvnAa 63
                    f  +  ++ yka+e+Gi   e+ ++     + C++C s++k++l +r+++C  Cg++++rDvn+ 
      CCG91873.1  5 FEAFGAMVGYKAEEAGIGQLEARERKlkPIQLCHRCSSIVKKTLGDRWHECV-CGASCQRDVNST 68
                    678999***********9999988887889**********************.**********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1038.08
//
Query:       CCG91874.1  [L=203]
Description: Elongation factor Ts [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-31  109.6   5.1    5.6e-31  107.8   5.1    2.5  1  EF_TS          Elongation factor TS
  ------ inclusion threshold ------
      0.019   15.3   0.2      0.067   13.5   0.2    2.0  1  Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain


Domain annotation for each model (and alignments):
>> EF_TS  Elongation factor TS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   5.1   6.2e-35   5.6e-31      77     208 .]      59     197 ..      11     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 107.8 bits;  conditional E-value: 6.2e-35
       EF_TS  77 ekevvasYiHgngrigvlvalegksdea.....lkelakqiAmhiaAmnPqylsedevdaevlekekeilkeqakeegkpekiiekiveGrlekflkev 170
                  ++v+asYiH + +igvlv++++++d       +ke++k+iA++iaA+nP+++s+++v++++l++ek+ +++++k e + e+ +++i++ +lekf+ + 
  CCG91874.1  59 PEGVIASYIHAGDKIGVLVEVNCETDFVartpaFKEFVKEIAIQIAAANPKFISKNDVPKAILDSEKNKIISTLKLE-NDEN-MDRIIQEKLEKFFIDN 155
                 5789********************9977889999**********************************999999974.4444.68************** PP

       EF_TS 171 cLleQeyvkddkktVeqvlkeaske....lkvvkfvrfevGe 208
                 cLleQ++vkd++ t++++l +  ++    + + +fvrf+vGe
  CCG91874.1 156 CLLEQPFVKDPSITINDLLYQRIAQigenIVIRRFVRFQVGE 197
                 ******************99888877888************8 PP

>> Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   7.5e-06     0.067      15      44 ..       9      38 ..       6      56 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.5e-06
                   HHHHHHHHH---HHHHHHHHTTTTSTEEEE CS
  Ribosomal_L12 15 VIKaVreitglgLkeaKdlVeaapkvvkeg 44
                    +K++re tg g++e K+  ea +  ++e+
     CCG91874.1  9 LVKELREKTGAGIMECKKALEASGGSIEEA 38
                   69********************99999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1365.00
//
Query:       CCG91875.1  [L=248]
Description: 30S ribosomal protein S2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-84  281.8   0.0    2.8e-84  281.7   0.0    1.0  1  Ribosomal_S2  Ribosomal protein S2


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.7   0.0   1.6e-88   2.8e-84       1     215 []       7     222 ..       7     222 .. 0.99

  Alignments for each domain:
  == domain 1  score: 281.7 bits;  conditional E-value: 1.6e-88
  Ribosomal_S2   1 LLeagvhfGhqtrrwnpkmkpyIygerngihiidlektlaalrraykvvkevaakggkilfvgtkkqakeavkeaakrangyyvnerWlgGtLTNfk 97 
                   L+++g++fGh++ rwnpkm+p++ g + gih+i+ +kt+++l+ra++++k+++ +ggk+lfvg k+qa+ +++e ak+++++yvn rWlgGtLTN+ 
    CCG91875.1   7 LIKSGTYFGHRKDRWNPKMAPFLLGLKGGIHLINPNKTMECLKRAADFLKKTSIEGGKVLFVGCKRQAQGLIEEIAKKSGSFYVNYRWLGGTLTNMV 103
                   899********************************************************************************************** PP

  Ribosomal_S2  98 tikksikklkeleeleedgeld.ltkkealklkkekekleknlggikkmkklPdlvvvldpkkekiavkEakklgipviaivDtnvdpdlvdypIpa 193
                   ti+ksi ++k +++le++g+++ l+kke +kl++e++kl+++l+gik+m++lP+++v++d+ ke+iav+Ea+kl ip++aivDtn +p+++dypIpa
    CCG91875.1 104 TIRKSIARMKWIDQLEASGTMErLPKKEVAKLRRENAKLHRSLDGIKDMERLPAAIVIVDVVKEEIAVSEARKLDIPIVAIVDTNGNPENIDYPIPA 200
                   *********************99************************************************************************** PP

  Ribosomal_S2 194 Nddsirsiklilgvladaieeg 215
                   Nddsirsi+ il+ +++ai+eg
    CCG91875.1 201 NDDSIRSIRTILEEIGNAIIEG 222
                   ********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1756.03
//
Query:       CCG91876.1  [L=53]
Description: hypothetical protein MFUM_260006 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       193  (0.0107647); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 430.09
//
Query:       CCG91877.1  [L=251]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2080.60
//
Query:       CCG91878.1  [L=62]
Description: hypothetical protein MFUM_260008 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 567.92
//
Query:       CCG91879.1  [L=182]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-08   32.9   0.0    1.2e-07   31.9   0.0    1.6  1  RNase_H_2       RNase_H superfamily
    8.5e-06   25.6   0.0      0.014   15.1   0.0    2.1  2  DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the ex
  ------ inclusion threshold ------
        3.6    8.1   5.9       0.29   11.5   1.0    1.7  2  CW_binding_1    Putative cell wall binding repeat


Domain annotation for each model (and alignments):
>> RNase_H_2  RNase_H superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0     2e-11   1.2e-07      44     163 ..      49     155 ..       7     158 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 2e-11
   RNase_H_2  44 ekailelflellekkkalvtfngksFDvpflkrlfkkykldeeefrhiDLlkelrkkklesysLksveke.lgierreedlsGsqavklyqeylrtgde 141
                 e++i + +l+ l++ +++v fn  +FD+p+l +      l+   +++iDLl  ++k   ++++L++++++ lgi  +   + G qa ++++e       
  CCG91879.1  49 EEEIDQ-LLAMLRESDCIVGFNILGFDIPVLDSYS-VFSLS--TLPCIDLLFDIEKRISRRIKLEQLARAtLGIGKT---AHGLQALRWWKE------- 133
                 333333.3457899******************988.55555..599************************9999988...79*******985....... PP

   RNase_H_2 142 ellekilaYNedDvralatlye 163
                  +l  i++Y+  Dv  ++ l+e
  CCG91879.1 134 GKLLDIAEYCCYDVKITKLLHE 155
                 5788888888888887777766 PP

>> DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00022       1.3      41      70 ..      52      80 ..      36      88 .. 0.79
   2 !   15.1   0.0   2.3e-06     0.014     118     168 ..     103     152 ..      82     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00022
  DNA_pol_B_exo2 41 ikkffegvekkkpqlVsfngrgfDlpvley 70
                    i + + +++++   +V+fn  gfD+pvl  
      CCG91879.1 52 IDQLLAMLRESD-CIVGFNILGFDIPVLDS 80
                    556666666555.79************975 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.3e-06
  DNA_pol_B_exo2 118 ranakLdelakllglPGKlgvdGskVaelyqegklkeireYcetDvlnTYl 168
                     ++++kL++la+ +   GK+  +G +  + ++egkl +i+eYc  Dv  T l
      CCG91879.1 103 SRRIKLEQLARATLGIGKT-AHGLQALRWWKEGKLLDIAEYCCYDVKITKL 152
                     5788999999877667997.59***********************977755 PP

>> CW_binding_1  Putative cell wall binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.3         3   1.8e+04       2       5 ..      22      25 ..      22      25 .. 0.83
   2 ?   11.5   1.0   4.8e-05      0.29       7      18 ..     160     171 ..     156     172 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3
                  EEEE CS
  CW_binding_1  2 gWvk 5 
                  gW+k
    CCG91879.1 22 GWQK 25
                  8997 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.8e-05
                   TTEEEEETTTSE CS
  CW_binding_1   7 ngnWYYfdsdGk 18 
                   ng+ YYf+++G 
    CCG91879.1 160 NGKVYYFNENGI 171
                   8999*******5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1422.54
//
Query:       CCG91880.1  [L=123]
Description: Fe2+/Zn2+ uptake regulation protein, fur/PerR [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-21   76.8   0.1    1.7e-21   76.6   0.1    1.0  1  FUR           Ferric uptake regulator family
     0.0098   15.9   0.3      0.014   15.4   0.3    1.2  1  Dimerisation  Dimerisation domain
  ------ inclusion threshold ------
      0.021   15.1   0.0       0.03   14.6   0.0    1.3  1  TFIIE_beta    TFIIE beta subunit core domain
        0.2   11.4   4.7       0.38   10.5   0.1    2.5  3  Rubredoxin_2  Rubredoxin metal binding domain
        4.9    6.8   7.5       0.59    9.8   2.4    2.1  2  MCR           Magnetochrome domain


Domain annotation for each model (and alignments):
>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.1   4.6e-25   1.7e-21       5     120 .]       3     115 ..       1     115 [. 0.95

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 4.6e-25
                 CHHHHHHHHHHHHHHHSSSBEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESSSSSEEEEEETTT--EEEE--HHHHHHHHH CS
         FUR   5 klTkqRekilevlekseehlsaeevykelkeedpeislaTVYrtLklleeaglvkelefedgesryelakkehhdhlicekCgkviefkddeiekiqee 103
                 + Tkq e+i++vl + e  ls  e++ +     p++++aTVYr L++l+e + v ++e+ +++ rye++ + hh+h+ c++C +++ef ++  +ki+e 
  CCG91880.1   3 RKTKQKEAIVSVLSSAESPLSPAEIQTRASLLVPSLGIATVYRLLRILKENKKVVTVEIPGESPRYEISGRAHHHHFYCRNCHQIFEFGKC-TDKIEEL 100
                 78***************************************************************************************99.6788887 PP

                 HHHHTT-EEEEEEEEEE CS
         FUR 104 iaekegfklvshrlely 120
                 +   +gf +++h++ ly
  CCG91880.1 101 VP--KGFLVQEHEIILY 115
                 77..5*******99887 PP

>> Dimerisation  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   3.9e-06     0.014      13      50 ..      13      50 ..      10      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.9e-06
  Dimerisation 13 diiakaggkplspsEiaskLpt.knpeapvlldRlLRlL 50
                   ++ +a  +plsp Ei ++ +  +++  ++ ++RlLR+L
    CCG91880.1 13 SVLSSAE-SPLSPAEIQTRASLlVPSLGIATVYRLLRIL 50
                  5788886.*************779*************99 PP

>> TFIIE_beta  TFIIE beta subunit core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   8.3e-06      0.03       9      52 ..      12      57 ..       6      69 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.3e-06
  TFIIE_beta  9 veylKkkdgplsleeIlsylsl.qldls.dknwllleaLknnpkie 52
                v+ l + + pls  eI+ + sl  ++l+  +   ll++Lk+n+k+ 
  CCG91880.1 12 VSVLSSAESPLSPAEIQTRASLlVPSLGiATVYRLLRILKENKKVV 57
                555566788*************65555598899***********96 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.8     0.055     2e+02      16      21 ..      80      85 ..      73      86 .. 0.75
   2 ?   -2.1   0.0      0.95   3.4e+03      14      17 ..      90      93 ..      90      95 .. 0.80
   3 ?   10.5   0.1    0.0001      0.38      13      21 ..     114     122 ..     111     123 .] 0.88

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.055
  Rubredoxin_2 16 rCpsCg 21
                   C++C+
    CCG91880.1 80 YCRNCH 85
                  488887 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.95
  Rubredoxin_2 14 fGrC 17
                  fG+C
    CCG91880.1 90 FGKC 93
                  7999 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.0001
  Rubredoxin_2  13 wfGrCpsCg 21 
                   ++GrCpsC 
    CCG91880.1 114 LYGRCPSCA 122
                   69******5 PP

>> MCR  Magnetochrome domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.4   0.00016      0.59      10      26 ..      77      87 ..      70      90 .. 0.77
   2 ?   -1.3   0.2      0.47   1.7e+03      18      23 ..     116     121 ..     115     121 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00016
                SS--...-S-GGGT--B CS
         MCR 10 PHtDGRqnmnCtkCHqI 26
                +H +      C++CHqI
  CCG91880.1 77 HHFY------CRNCHQI 87
                5555......******9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.47
                 S-GGGT CS
         MCR  18 mnCtkC 23 
                 ++C +C
  CCG91880.1 116 GRCPSC 121
                 89*999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 928.99
//
Query:       CCG91881.1  [L=81]
Description: hypothetical protein MFUM_260011 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 624.87
//
Query:       CCG91882.1  [L=191]
Description: hypothetical protein MFUM_260012 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1400.77
//
Query:       CCG91883.1  [L=484]
Description: DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-72  242.4   0.0    3.4e-72  241.6   0.0    1.4  1  Sigma54_activat  Sigma-54 interaction domain
    1.5e-27   96.0   0.1    3.1e-27   94.9   0.1    1.6  1  Response_reg     Response regulator receiver domain
    2.1e-21   76.5   0.0    8.4e-21   74.5   0.0    2.1  1  Sigma54_activ_2  Sigma-54 interaction domain
    1.1e-06   28.7   0.0    2.8e-06   27.4   0.0    1.8  1  AAA_5            AAA domain (dynein-related subfamily)
    5.4e-06   26.9   0.1    3.3e-05   24.3   0.0    2.4  3  AAA              ATPase family associated with various cellul
     0.0025   17.9   0.2     0.0099   16.0   0.0    2.1  3  AAA_2            AAA domain (Cdc48 subfamily)
  ------ inclusion threshold ------
      0.021   14.2   0.0      0.037   13.3   0.0    1.4  1  LIX1             Limb expression 1
      0.034   14.0   0.0       0.11   12.4   0.0    1.9  2  AAA_3            ATPase family associated with various cellul
       0.04   14.3   0.0      0.091   13.1   0.0    1.9  1  AAA_16           AAA ATPase domain
      0.056   12.6   0.0        0.1   11.8   0.0    1.3  1  TIP49            TIP49 P-loop domain
      0.065   13.0   0.1       0.11   12.3   0.1    1.2  1  DUF4640          Domain of unknown function (DUF4640)
      0.083   12.3   0.1         11    5.3   0.0    2.6  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.11   13.0   0.2       0.42   11.1   0.2    2.0  1  DUF3644          Protein of unknown function (DUF3644)


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.6   0.0   2.5e-75   3.4e-72       1     167 [.     160     326 ..     160     327 .. 0.99

  Alignments for each domain:
  == domain 1  score: 241.6 bits;  conditional E-value: 2.5e-75
                      ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTT CS
  Sigma54_activat   1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadg 94 
                      +ig+s+a++++++ i +va+t+++vli+GesG+GKel+arai++ s r+++pf+a+ncaaipe+lleseLFGhe+G+FtGA +++ G+fe+ dg
       CCG91883.1 160 IIGNSPAMQKVYKLIGQVAPTNATVLIVGESGSGKELVARAIYQYSLRSNRPFIAINCAAIPENLLESELFGHERGSFTGAMAQRIGKFEQGDG 253
                      79******************************************************************************************** PP

                      SEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEE CS
  Sigma54_activat  95 GtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnviei 167
                      Gt+fLDeige+p+++Q+k+lrvlqege+ r+Gs+++ik+dvriiaatn+dl++av++++fr+dLyyrlnv+++
       CCG91883.1 254 GTVFLDEIGEMPITTQAKILRVLQEGEFCRLGSNEPIKTDVRIIAATNKDLAAAVAKREFRADLYYRLNVVKL 326
                      **********************************************************************997 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.1   2.3e-30   3.1e-27       1     110 [.      22     130 ..      22     132 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 2.3e-30
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +livdD+++v   ++++lee  + +   a++g+eal+ l++++vd++l+Di+m g +Gle+lkeir+ +p+  vii+ta+++ ++a+ea+k+ga+d+
    CCG91883.1  22 ILIVDDEEDVFYSFQRFLEEFPL-KAYNAKSGEEALKFLRSNTVDIVLMDIRMGGKNGLETLKEIRKLSPQQIVIIMTAYGTCQTAIEAMKLGAYDY 117
                   8*******************999.999********************************************************************** PP

                   EESSG-HHHHHHH CS
  Response_reg  98 lsKpfdpeeLlka 110
                   + Kpf++ eL+++
    CCG91883.1 118 ILKPFNILELKSI 130
                   *******999876 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   6.1e-24   8.4e-21       1     138 []     161     331 ..     161     331 .. 0.89

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 6.1e-24
                      X---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-HHHHHHH..............T.........TTS CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklpldlleq..............a.........kgg 71 
                      +g+s+a+q+  + + q+a  ++ v+++Ge GsgkelvAr++ + s +   +f+ +++a++p +lle+              a         +gg
       CCG91883.1 161 IGNSPAMQKVYKLIGQVAPTNATVLIVGESGSGKELVARAIYQYSLRSNRPFIAINCAAIPENLLESelfghergsftgamAqrigkfeqgDGG 254
                      79***********************************************************666666555555554444331444555555*** PP

                      EEEEEE-TT--HHHHHHHHHHHHH........HT..TTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  72 tLylkdiadlskaeqkeLlellak........ae..ksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      t +l +i +++   q+++l +l++        +e  k ++r+++++ kdl++ +++ +f + L+++L  ++l +PpL
       CCG91883.1 255 TVFLDEIGEMPITTQAKILRVLQEgefcrlgsNEpiKTDVRIIAATNKDLAAAVAKREFRADLYYRLNVVKLTLPPL 331
                      *******************************9665699**************************************9 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0     2e-09   2.8e-06       2     122 ..     184     302 ..     183     321 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2e-09
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEveraesevlnsLlslleerr 93 
                 vl+vG++G+gK  +a+ + +     nr++  +++ +   +e+l+ +  +  ++ s++   + r ++     g +++lDE+ +++  ++++ l++l e +
  CCG91883.1 184 VLIVGESGSGKELVARAIYQYSlrsNRPFIAINCAA--IPENLLESELFGHERGSFTGAMAQRIGKfeqgDGGTVFLDEIGEMPITTQAKILRVLQEGE 280
                 89**************99988787677776665543..44444444444455567777777777779999***************************** PP

                 EE..-SSSEEE---......-EEEEEESS CS
       AAA_5  94 llleeggelvkaknddllerfrviatanp 122
                 +    ++e +  k d     +r+ia++n+
  CCG91883.1 281 FCRLGSNEPI--KTD-----VRIIAATNK 302
                 **66666666..444.....9*****997 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.4     1e+04      48      63 ..      80      95 ..      56     103 .. 0.59
   2 !   24.3   0.0   2.4e-08   3.3e-05       1     111 [.     184     302 ..     184     321 .. 0.75
   3 ?   -1.6   0.0       2.4   3.3e+03      11      31 ..     416     436 ..     379     454 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.4
                HHHHHHHHTSTS.EEEE CS
         AAA 48 elfkeakekakp.silf 63
                e++ke+++ + p  i++
  CCG91883.1 80 ETLKEIRKLS-PqQIVI 95
                4444444444.222222 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 2.4e-08
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS.....STTHHHHHHHHHHHH.HHHTS..TSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk.....yvgesekkirelfke.akeka..kpsilfiDEidalaksrsgseseeeervvnq 88 
                 vl++G  G GK l+a+a+ + +   +++f+ i+++ + ++     ++g+   ++ + +++ + + +  +   +f+DEi ++  +            +++
  CCG91883.1 184 VLIVGESGSGKELVARAIYQYSlrsNRPFIAINCAAIPENlleseLFGHERGSFTGAMAQrIGKFEqgDGGTVFLDEIGEMPITT-----------QAK 271
                 799******************65558*********9996678888555555444444433122222334599*********6666...........788 PP

                 HHHHHHHTTTS........SSTEEEEEEESS CS
         AAA  89 Llteldgvkkk........eskvivigatnr 111
                 +l++l++ +          + +v +i+atn+
  CCG91883.1 272 ILRVLQEGEFCrlgsnepiKTDVRIIAATNK 302
                 8888877766677888888888999999997 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHTHEEEEEET CS
         AAA  11 KTllakavakelgvefleisg 31 
                 KT+ a++  kel++ + ei +
  CCG91883.1 416 KTSSAESFSKELNTLIEEIVA 436
                 455555555555444444433 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.4   4.6e+03     115     130 ..      87     102 ..      79     151 .. 0.58
   2 !   16.0   0.0   7.2e-06    0.0099       4     129 ..     182     302 ..     180     344 .. 0.78
   3 ?   -3.8   0.1       8.8   1.2e+04      38      51 ..     418     429 ..     403     447 .. 0.42

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.4
                 -EE-TT-EEEEEE--T CS
       AAA_2 115 kvdtknilfImtgafg 130
                 k + ++i++Imt    
  CCG91883.1  87 KLSPQQIVIIMTAYGT 102
                 5556667777765433 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 7.2e-06
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT-HHHHTTS...EEEEETGGG-------------HHH CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgyvgaeegG...ivllDEidKihpkessgadvSregV 95 
                 +++l++g++g+Gk+++a+a+ ++   ++++++i +++ ++ e    +e   h   +++ga    +g+ e+G    v+lDEi                  
  CCG91883.1 182 ATVLIVGESGSGKELVARAIYQYSL-RSNRPFIAINCAAIPEnlleSELFGHERGSFTGAMAQRIGKFEQGdggTVFLDEIGEMPI-----------TT 268
                 5789********************8.9**********9988866667777888888888888777776666666*******98877...........77 PP

                 HHHHHHHHH--EE-.------EE-TT-EEEEEE-- CS
       AAA_2  96 qrdLLqileggtlt.dkqgrkvdtknilfImtgaf 129
                 q  +L++l +g+     ++++++t+   +I++++ 
  CCG91883.1 269 QAKILRVLQEGEFCrLGSNEPIKTDV-RIIAATNK 302
                 88888888877765334445777764.44555555 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 8.8
                 EEGGG-------TH CS
       AAA_2  38 adaselleeeeveh 51 
                 + a ++ +  e+++
  CCG91883.1 418 SSAESFSK--ELNT 429
                 22222222..2222 PP

>> LIX1  Limb expression 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.7e-05     0.037     187     241 ..     359     413 ..     351     421 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.7e-05
        LIX1 187 ralDddmrsqmaldWiareqespgliaqelavaekeleearkagreLrfykekkd 241
                 r   d++++ ma  W    +e  ++i++ + +a++   ++++  +e+rfy+ kkd
  CCG91883.1 359 RVSQDAIKHLMAYHWPGNIRELENVIQRAMVLATSATIQSCHLPEEIRFYQKKKD 413
                 555789999********************************************98 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       9.3   1.3e+04      79      95 ..     128     144 ..     127     148 .. 0.78
   2 ?   12.4   0.0   7.7e-05      0.11       2     111 ..     184     301 ..     183     307 .. 0.78

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 9.3
       AAA_3  79 qsalleameerqvtveg 95 
                 +s l++ame +++t e 
  CCG91883.1 128 KSILIKAMEASKLTKEA 144
                 57799999999998765 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 7.7e-05
       AAA_3   2 vllegvPGlaktllvkalak.aldlefkriqftpdllPsdilGtevfeekekefe....fkkGpvfan....llladeinrappktqsalleameerqv 91 
                 vl+ g  G +k l+++a+ + +l  +   i +    +P ++l +e+f +++ +f+     + G  f +     ++ dei   p  tq+ +l +++e + 
  CCG91883.1 184 VLIVGESGSGKELVARAIYQySLRSNRPFIAINCAAIPENLLESELFGHERGSFTgamaQRIGK-FEQgdggTVFLDEIGEMPITTQAKILRVLQEGEF 281
                 7888999999999999987625777777788999999999999999999886664111122333.32223337999*********************** PP

       AAA_3  92 tvegethklpepflvlatqn 111
                    g++ ++++   ++a+ n
  CCG91883.1 282 CRLGSNEPIKTDVRIIAATN 301
                 **********9999999887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.6e-05     0.091      22      63 ..     180     220 ..     161     444 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.6e-05
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                      vl++GesG+GK  ++r+++++  +++  f++ +c   
  CCG91883.1 180 TN-ATVLIVGESGSGKELVARAIYQYSLRSNRPFIAINCAAI 220
                 33.68*******************999888777877777665 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.4e-05       0.1      37      88 ..     168     220 ..     143     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX CS
       TIP49  37 gvivelikekklaGravLlaGpsgtGktalaiaisk.elgedvpfvalsgsev 88 
                   + +li +   +  +vL++G+sg+Gk  +a ai + +l ++ pf+a++ + +
  CCG91883.1 168 QKVYKLIGQVAPTNATVLIVGESGSGKELVARAIYQySLRSNRPFIAINCAAI 220
                 5566777777777789******************875799*******998765 PP

>> DUF4640  Domain of unknown function (DUF4640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   7.6e-05      0.11     188     264 ..     391     467 ..     360     477 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.6e-05
     DUF4640 188 qfpqipprlqerelaekisqatksqrtssletssvssgkpeeedtasetqalsclNfrwvfrWLrqqvlSsllrReh 264
                  +  + + ++  e  +  ++ ++s++tss+e+ s   +   ee  a+e ++  + N++ +f+W+ ++vl    + e+
  CCG91883.1 391 ATSATIQSCHLPEEIRFYQKKKDSKKTSSAESFSKELNTLIEEIVAAERKENRVENLKTLFHWIYNHVLEECGGDES 467
                 4455566777778888889999**********************************************988766554 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3   1.8e+03      61      90 ..     128     158 ..     119     174 .. 0.68
   2 ?    5.3   0.0    0.0081        11      23      43 ..     182     202 ..     160     210 .. 0.86
   3 ?    3.9   0.0     0.021        29      96     159 ..     242     303 ..     233     334 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
  Mg_chelatase  61 asvag.kkeeekllkrrpfraphhsaskaal 90 
                   +s+   + e++kl+k++  ++ph s+ + +l
    CCG91883.1 128 KSILIkAMEASKLTKEASKESPHSSVDRHGL 158
                   3443325677788888889999999988776 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0081
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlp 43 
                     +l+vG +GsGK ++a+++ 
    CCG91883.1 182 ATVLIVGESGSGKELVARAIY 202
                   5799*************9885 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.021
  Mg_chelatase  96 kpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpc 159
                     + G+      G +fLDE+ e+  ++   + + l++ge    r  ++    +++ ++aa+N  
    CCG91883.1 242 AQRIGKFEQGDGGTVFLDEIGEMPITTQAKILRVLQEGEF--CRLGSNEPIKTDVRIIAATNKD 303
                   566788888899***********99888777777777764..4666666667777778887765 PP

>> DUF3644  Protein of unknown function (DUF3644)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2    0.0003      0.42      24      66 ..     407     451 ..     391     453 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
     DUF3644  24 iy.kkkrykknrdGnpktisLeeclkkvdkek.ddpvrkNleaLi 66 
                 +y kkk+ kk+ + ++ +++L+++++++ + + +++ ++Nl+ L 
  CCG91883.1 407 FYqKKKDSKKTSSAESFSKELNTLIEEIVAAErKENRVENLKTLF 451
                 455666699999999***************8868999****9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       998  (0.055664); expected 358.6 (0.02)
Passed bias filter:                      749  (0.0417759); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 3086.91
//
Query:       CCG91884.1  [L=167]
Description: Thiol-disulfide isomerase or thioredoxin [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-16   58.2   0.2    9.1e-16   57.8   0.2    1.1  1  Thioredoxin_7   Thioredoxin-like
    8.3e-14   52.0   0.0    1.2e-13   51.5   0.0    1.2  1  Thioredoxin_2   Thioredoxin-like domain
    1.5e-10   41.3   0.0      2e-10   40.9   0.0    1.1  1  Thioredox_DsbH  Protein of unknown function, DUF255
    5.5e-09   35.9   0.5    1.1e-07   31.7   0.5    2.1  1  Thioredoxin     Thioredoxin
    5.7e-06   26.6   0.9    0.00017   21.8   0.9    2.4  1  Thioredoxin_8   Thioredoxin-like
    0.00072   19.4   0.0    0.00095   19.1   0.0    1.1  1  TraF            F plasmid transfer operon protein
     0.0025   17.7   0.6      0.006   16.5   0.6    1.5  1  AhpC-TSA        AhpC/TSA family
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.022   14.3   0.0    1.3  1  DUF953          Eukaryotic protein of unknown function (DUF95
      0.026   14.3   0.0       0.37   10.6   0.0    2.3  2  Thioredoxin_9   Thioredoxin
      0.054   13.2   0.0      0.076   12.7   0.0    1.3  1  Redoxin         Redoxin
        0.1   12.6   0.0       0.16   11.9   0.0    1.3  1  HyaE            Hydrogenase-1 expression protein HyaE


Domain annotation for each model (and alignments):
>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.2   5.6e-19   9.1e-16       2      83 .]      41     134 ..      40     134 .. 0.81

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 5.6e-19
                    --SSHHHHHHHHHHHT--EEEEE.--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS...--S-GGG...-TT-.......--....SSEEEE CS
  Thioredoxin_7   2 wlsdldealakaaergkpvlvff.gaswcftCqalerdflsdeevkaalaekfvllrvdv...terdani..lelde.......qg....vPvvaf 80 
                    wl ++++al++a++++k vl +f g++wc+ Cq+l+r++ s++e+k+ ++++ vll vd+        +   l  ++       q+    +P++++
     CCG91884.1  41 WLTNYAQALSEAKKENKMVLMNFtGSDWCPWCQKLDREVFSTQEFKNYAQKNLVLLEVDFpqhK---TQSaeL--KKqnedlanQYnvdsFPTLIL 131
                    9999*****************77699*********************888**********6551...444231..222344454667777****99 PP

                    E-T CS
  Thioredoxin_7  81 ldp 83 
                    l p
     CCG91884.1 132 LSP 134
                    987 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   7.1e-17   1.2e-13       1     101 [.      52     146 ..      52     148 .. 0.90

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 7.1e-17
  Thioredoxin_2   1 akgngkpvlvvft.dpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgk.eiva 94 
                    ak+++k vl+ ft +++Cp C+kl +e+++ ++++ +      +++ +   v++ + k ++ ++k+  +n++la++y+v+++Pt+++l ++ e+ +
     CCG91884.1  52 AKKENKMVLMNFTgSDWCPWCQKLDREVFSTQEFKNY-----AQKNLVLLEVDFPQHKTQSAELKK--QNEDLANQYNVDSFPTLILLSPNgEE-L 139
                    6899*********************************.....****99999999999999877776..******************99999544.4 PP

  Thioredoxin_2  95 rlpGyvp 101
                       Gy+p
     CCG91884.1 140 STFGYMP 146
                    5578886 PP

>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   1.2e-13     2e-10      17     127 ..      37     150 ..      30     166 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 1.2e-13
  Thioredox_DsbH  17 knpvdWypwgeealekakeedkpills.iGysachWChvmekesfedeevaallnesfvsvkvD....reerPdldkiymeavqaltgsggWPln 106
                     +np +W +  ++al++ak+e+k++l++  G  +c WC+ +++e f+ +e  ++  ++ v + vD    + +  +l k   +++++ +   ++P  
      CCG91884.1  37 ENP-KWLTNYAQALSEAKKENKMVLMNfTGSDWCPWCQKLDREVFSTQEFKNYAQKNLVLLEVDfpqhKTQSAELKKQNEDLANQYNV-DSFPTL 129
                     344.8*********************94699*********************************433233334444444444444433.489*** PP

  Thioredox_DsbH 107 vfltpdlkpffggtYfpkeer 127
                     ++l+p+++ + +  Y+p    
      CCG91884.1 130 ILLSPNGEELSTFGYMPGGPG 150
                     ****************98654 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.5     7e-11   1.1e-07      11      84 ..      46     138 ..      40     146 .. 0.68

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 7e-11
                  HHHHTT...TSSEEEEEEE.-TTSHHHHCHHHHH...HHHHHHCTTTSEEEEEET...........TTSHHHHHHTT-SSSSEEEEEE.TTEE CS
  Thioredoxin  11 eeevak...ekklvlveFy.ApwCghCkalaPel...eklaeelkdkvklakvdv...........denedlakkyevegiPtlklfk.ngke 84 
                   +++++   e+k vl++F+ ++wC+ C++l  e+   +++++  +++++l++vd            ++nedla++y+v+++Ptl+l+  ng+e
   CCG91884.1  46 AQALSEakkENKMVLMNFTgSDWCPWCQKLDREVfstQEFKNYAQKNLVLLEVDFpqhktqsaelkKQNEDLANQYNVDSFPTLILLSpNGEE 138
                  555444333899******9568********99872223444444449999999963333333333356889************9987514544 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.9   1.1e-07   0.00017      48      94 ..      83     137 ..      56     138 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.1e-07
                    HHHHHHGGGS....-TTSEE.EE-TT-....HHHHTT-S--TT-SEEEEE-TT-B CS
  Thioredoxin_8  48 eefekylkkn....kkpwlsvpfddkk....rnklkkkynvkaiPtlvvldknge 94 
                    +ef++y +kn    + ++  + +++ +    ++ l+++ynv ++Ptl++l++nge
     CCG91884.1  83 QEFKNYAQKNlvllEVDFPQHKTQSAElkkqNEDLANQYNVDSFPTLILLSPNGE 137
                    68888888886655334444444443233336688******************97 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   5.8e-07   0.00095     121     207 ..      46     140 ..      42     145 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.8e-07
        TraF 121 eaalkklake..ygLlfFyrgk.cpyceaq...apilqafadky..glevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpksqkvv 207
                 ++al++++ke  + L+ F  ++ cp c+++   + + q+f++    +l ++ V+  +   ++ + ++++++ a++++v ++P+l+l +p+ ++ +
  CCG91884.1  46 AQALSEAKKEnkMVLMNFTGSDwCPWCQKLdreVFSTQEFKNYAqkNLVLLEVDFPQHKTQSAELKKQNEDLANQYNVDSFPTLILLSPNGEELS 140
                 57777777765589999999889****986222677899998762255555666666666667778899999*****************977665 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.6   3.7e-06     0.006      20      83 ..      49     127 ..      42     148 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.7e-06
                 CHHH..TTSEEEEEEESTST-CCHHHHHHHH..HHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H............S CS
    AhpC-TSA  20 lsdy..kgkpvvlffypkdwcpvCttelpal..aklyeefkergvevigvsvdspeshkkfiekes...........ln 83 
                 ls+   ++k v+ +f+ +dwcp C++  ++    +++++++++++ ++ v   +++++ +  +k++           ++
  CCG91884.1  49 LSEAkkENKMVLMNFTGSDWCPWCQKLDREVfsTQEFKNYAQKNLVLLEVDFPQHKTQSAELKKQNedlanqynvdsFP 127
                 566643669***************9754444112345677778888888887666655555555444666666664444 PP

>> DUF953  Eukaryotic protein of unknown function (DUF953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.4e-05     0.022      12      95 ..      49     131 ..      40     141 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
                 HHH..TSSSEEEEEEB--B-TTS-BSSHHHHHHHHHH..HHHHHH.-SS-EEEEEEE---HHHHT-TTSHHHH....TS---SSSEEEE CS
      DUF953  12 lkelekeskivfilFlgekdteGesWCPdCvkaepvi..eealke.apedvklvrvdvGdrevWkdpanpfRkd..pklkltgvPtLlr 95 
                 l e +ke+k+v + F      +G  WCP C k +  +  ++ +k+ a ++ +l++vd  ++++   + ++  +d   ++++   PtL+ 
  CCG91884.1  49 LSEAKKENKMVLMNF------TGSDWCPWCQKLDREVfsTQEFKNyAQKNLVLLEVDFPQHKTQSAELKKQNEDlaNQYNVDSFPTLIL 131
                 555555556666655......5678*****99876661245689956669999999988777655444443333224789999999985 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.21   3.4e+02      46      57 ..      62      73 ..      32      76 .. 0.57
   2 ?   10.6   0.0   0.00023      0.37      78     118 ..     109     146 ..     105     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.21
                   EEE--TT-HHHH CS
  Thioredoxin_9 46 lvltedwCgDaa 57
                        dwC+ ++
     CCG91884.1 62 NFTGSDWCPWCQ 73
                   233579999776 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00023
                    E-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS- CS
  Thioredoxin_9  78 llrdenlelmdqyltngaraiPtliildeegeelgvwgerP 118
                     l+++n++l +qy      + Ptli+l  +geel ++g +P
     CCG91884.1 109 ELKKQNEDLANQYN---VDSFPTLILLSPNGEELSTFGYMP 146
                    5789*********5...59*******************998 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.7e-05     0.076      22      62 ..      50      92 ..      40     146 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.7e-05
                EHHHHTTSEEEEEEESTTT-HHHHHTHH...HHHTHHHHHHCST CS
     Redoxin 22 slsefkgkkvvvnfvpgafcPtCsaehp...yleklaellkekg 62
                s ++ ++k v++nf  + +cP C++  +     +++++  ++k+
  CCG91884.1 50 SEAKKENKMVLMNFTGSDWCPWCQKLDRevfSTQEFKNY-AQKN 92
                334466777999************977644444444333.4443 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.8e-05      0.16      55      91 ..      98     133 ..      83     143 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.8e-05
                 CT-TTS-EEEEEETHHHHHHHHHCCT-TSSSEEEEEE CS
        HyaE  55 kaFpnalraavvadreqeealaerfgvlktPsllflr 91 
                   Fp+ +++ +   ++q+e la++++v  +P+l++l 
  CCG91884.1  98 VDFPQHKTQSAEL-KKQNEDLANQYNVDSFPTLILLS 133
                 4799999888877.899*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1286  (0.0717274); expected 358.6 (0.02)
Passed bias filter:                      811  (0.045234); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1147.29
//
Query:       CCG91885.1  [L=128]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0025   17.1   0.1      0.003   16.8   0.1    1.0  1  Astro_capsid_p  Turkey astrovirus capsid protein
     0.0032   17.4   0.5     0.0055   16.6   0.5    1.4  1  Sdh5            Flavinator of succinate dehydrogenase
     0.0034   17.8   2.1     0.0039   17.6   2.1    1.1  1  DUF737          Protein of unknown function (DUF737)
     0.0034   17.4   1.3     0.0038   17.2   1.3    1.1  1  GvpL_GvpF       Gas vesicle synthesis protein GvpL/GvpF
  ------ inclusion threshold ------
      0.017   15.7   5.1       0.02   15.4   5.1    1.2  1  TipAS           TipAS antibiotic-recognition domain
      0.018   14.6   0.2      0.026   14.1   0.1    1.3  1  DUF3786         Domain of unknown function (DUF3786)
       0.02   14.5   4.8      0.026   14.1   4.8    1.1  1  Fzo_mitofusin   fzo-like conserved region
      0.022   14.1   0.5      0.023   14.0   0.5    1.1  1  CorA            CorA-like Mg2+ transporter protein
      0.041   13.7   3.3      0.049   13.5   3.3    1.1  1  PIN_8           PIN like domain
      0.069   13.5   3.6      0.096   13.0   3.6    1.2  1  OmpH            Outer membrane protein (OmpH-like)
       0.11   12.5   0.4       0.26   11.3   0.4    1.6  1  DUF4083         Domain of unknown function (DUF4083)
       0.18   10.4   3.7       0.19   10.3   3.7    1.0  1  FapA            Flagellar Assembly Protein A
        1.1    9.3   6.5        1.6    8.8   6.5    1.2  1  DUF2730         Protein of unknown function (DUF2730)
          2    8.6   9.8        3.3    7.9   9.8    1.4  1  baeRF_family5   Bacterial archaeo-eukaryotic release factor f
        2.3    7.2   5.0       0.36    9.9   1.6    1.4  2  FUSC-like       FUSC-like inner membrane protein yccS


Domain annotation for each model (and alignments):
>> Astro_capsid_p  Turkey astrovirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.5e-06     0.003     221     301 ..      31     109 ..      20     116 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.5e-06
                     ..XXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Astro_capsid_p 221 egederktgaeeeisdpsdeedeevsdeetdtevesdeDeddevdrfDletsyeSeaeDddvennRvtLlnTliNQGitve 301
                     +++d+++  +++e s p+ ++ ++  + e+ + +    D +de+ +  l ++ +  + D++   + vtLlnTl+NQ i++ 
      CCG91885.1  31 SQADPQAQSSSSENSHPHGKAYRHKMAREMHERMQRLMDKQDEELKK-LANEMNKAPKDQK-LDKVVTLLNTLVNQRIQMH 109
                     45677777788888888888888999999999**********99888.99999999****9.6788**********99875 PP

>> Sdh5  Flavinator of succinate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.5   4.6e-06    0.0055      26      73 .]      51      98 ..      47      98 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.6e-06
                HHTTT--HHHHHHHHHHHTS--HHHHHHHHT-.---S-HHHHHHHHHH CS
        Sdh5 26 khlatlseeeldaferLLdleDpdLldwltgrkeepedaelaallekl 73
                ++ +++  e  ++ +rL+d +D +L +++ + +++p+d +l++++++l
  CCG91885.1 51 AYRHKMAREMHERMQRLMDKQDEELKKLANEMNKAPKDQKLDKVVTLL 98
                67899************************************9999865 PP

>> DUF737  Protein of unknown function (DUF737)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   2.1   3.3e-06    0.0039      56     142 ..      26     116 ..       8     126 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.3e-06
      DUF737  56 skaaestsapssasssssqakveeeelrkkikeelqkrleeeqakaeavqeelakllerEreaaq.......eelteailrerlstedErlkaq 142
                 ++++es++ p+ +ssss++++ + ++ r+k++ e+ +r+++   k     eel+kl+++  +a +        +l ++++ +r+++++E +  +
  CCG91885.1  26 QNPVESQADPQAQSSSSENSHPHGKAYRHKMAREMHERMQRLMDK---QDEELKKLANEMNKAPKdqkldkvVTLLNTLVNQRIQMHEEMKAMH 116
                 78899999999999999999999999********96664443333...4566666666555544422222225666677778877777765544 PP

>> GvpL_GvpF  Gas vesicle synthesis protein GvpL/GvpF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.3   3.2e-06    0.0038     133     208 ..      27     103 ..      17     124 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.2e-06
   GvpL_GvpF 133 dpelrelreeieaasesgtayllrkrlgqrleealeerreelaeeleeaLaplaeevrerepqd..eemvlnaafLvd 208
                 +p  +++  +++++s+   ++ + k+++++++++++er ++l+++ +e+L++la e++  ++++  ++ v  +  Lv+
  CCG91885.1  27 NPVESQADPQAQSSSS-ENSHPHGKAYRHKMAREMHERMQRLMDKQDEELKKLANEMNKAPKDQklDKVVTLLNTLVN 103
                 4444555555555555.4599999*********************************999888877565666666665 PP

>> TipAS  TipAS antibiotic-recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   5.1   1.7e-05      0.02      16      89 ..      50     120 ..      36     128 .] 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TipAS  16 qeseekiaklskedweelkaelkelfaklaaalaagkdpdseeaqelaeehralieefwgecskeilaglgqmY 89 
                 ++++ k+a+   e +++l+++++e ++kla+ +  +k+p++++  +++  + +l+++  + +++e+ a+  +m 
  CCG91885.1  50 KAYRHKMAREMHERMQRLMDKQDEELKKLANEM--NKAPKDQKLDKVVTLLNTLVNQRIQ-MHEEMKAMHHKMM 120
                 56788999999*********************9..*********************7776.7777766666665 PP

>> DUF3786  Domain of unknown function (DUF3786)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.2e-05     0.026      67     117 ..      37      87 ..      23     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
     DUF3786  67 tgkwvsfrelpggavyyrafekraekplaktfggdpeklkkaaeklggkpl 117
                 +++  s ++ p+g+ y  ++++++++++ ++ +++ e+lkk a +++  p 
  CCG91885.1  37 AQSSSSENSHPHGKAYRHKMAREMHERMQRLMDKQDEELKKLANEMNKAPK 87 
                 55556778889**********************************998754 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   4.8   2.2e-05     0.026      89     158 ..      50     118 ..      38     120 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
  Fzo_mitofusin  89 ancshqvqqelsstfarlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLekfeeq 158
                    ++ +h++ +e+++ ++rl  + de  k+l +e+++  k+ +kl++v + +++l n+  ++++e+++ +++
     CCG91885.1  50 KAYRHKMAREMHERMQRLMDKQDEELKKLANEMNKAPKD-QKLDKVVTLLNTLVNQRIQMHEEMKAMHHK 118
                    67899*****************************99887.99*********************9988765 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.5   1.9e-05     0.023     116     174 ..      57     115 ..      33     128 .] 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-05
        CorA 116 ldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevl 174
                  +e+ +r+ +l++k +eel++l +e+++  k++ l+++++l  +lv+ r ++++ ++++
  CCG91885.1  57 AREMHERMQRLMDKQDEELKKLANEMNKAPKDQKLDKVVTLLNTLVNQRIQMHEEMKAM 115
                 67899***************************************999988888877776 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.3   4.1e-05     0.049      80     146 ..      44     110 ..      24     125 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.1e-05
       PIN_8  80 alkkwakkkald......teelrkelkkqleelkeelkaeleelkksskadkeedpilkkleellegkigeal 146
                   + +      +      ++e+++++++ +++ +eel ++l + +++ ++d++ d++++ l++l++++i+ + 
  CCG91885.1  44 NSHPHG-----KayrhkmAREMHERMQRLMDKQDEEL-KKLANEMNKAPKDQKLDKVVTLLNTLVNQRIQMHE 110
                 222222.....12223356899999999999999999.6666666666667679**************97654 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   3.6     8e-05     0.096      13      90 ..      45     119 ..      40     126 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8e-05
                 HSHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  13 espegkaaqeqlekkf.kklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqel 90 
                 ++p gka + +++++  +++q  ++++ +el+kl++e++k+     k +k  ++ ++ + l +++ q  +e+++   ++
  CCG91885.1  45 SHPHGKAYRHKMAREMhERMQRLMDKQDEELKKLANEMNKAP----KDQKLDKVVTLLNTLVNQRIQMHEEMKAMHHKM 119
                 57999999999999996788999999999*********8433....334444444444444443333336665555555 PP

>> DUF4083  Domain of unknown function (DUF4083)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   0.00022      0.26      35      55 ..      79      99 ..      74     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
     DUF4083 35 akkkkskeleqKLDkiIeLLe 55
                a++ ++ + +qKLDk++ LL+
  CCG91885.1 79 ANEMNKAPKDQKLDKVVTLLN 99
                6677788889**********8 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.7   0.00016      0.19     333     401 ..      55     119 ..      23     127 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
        FapA 333 pelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeel 401
                 + ++e+++++++++ +  eel+kl ++++k pk    +q   +    l+ l ++++++ ee++++++++
  CCG91885.1  55 KMAREMHERMQRLMDKQDEELKKLANEMNKAPK----DQKLDKVVTLLNTLVNQRIQMHEEMKAMHHKM 119
                 445666677777777888888888888888888....44455667777777777777777777777654 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.5    0.0014       1.6      32      93 ..      58     119 ..      51     120 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0014
     DUF2730  32 redleklaekveendkrlteletkvenLPtakdlekLkllladlrgelkaleaevrqlshqv 93 
                 re +e+++  ++++d+ l++l  ++++ P  + l+k+ +ll+ l  +  ++++e+++++h++
  CCG91885.1  58 REMHERMQRLMDKQDEELKKLANEMNKAPKDQKLDKVVTLLNTLVNQRIQMHEEMKAMHHKM 119
                 667788888899***********************************************985 PP

>> baeRF_family5  Bacterial archaeo-eukaryotic release factor family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   9.8    0.0028       3.3      47     125 ..      51     127 ..      25     128 .] 0.70

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0028
  baeRF_family5  47 aer.ssgsgskdefeerfeenqqRwyKslaskleklakereweeiylvGekeeakeleeelnkkvkevieknllnkeekk 125
                    a r +++ + +++  +r+  +q   +K+la++++k  k++++++++ + ++   + +  ++++++k + +k+++n++e++
     CCG91885.1  51 AYRhKMAREMHER-MQRLMDKQDEELKKLANEMNKAPKDQKLDKVVTLLNTLVNQRI--QMHEEMKAMHHKMMGNHKEHH 127
                    1221333333444.457777777789******************9988666655555..799***************985 PP

>> FUSC-like  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.7   3.2e+03       5      21 ..       9      25 ..       6      29 .. 0.72
   2 ?    9.9   1.6    0.0003      0.36     207     265 ..      60     118 ..      38     125 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.7
   FUSC-like  5 tllcfalaslivqlllp 21
                + +cfal sl+   l++
  CCG91885.1  9 ISCCFALGSLLLSPLFA 25
                66899988888776665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0003
   FUSC-like 207 vlfrfqrllelqakaceeiaqaillnkpyqhserleraleeleqslellakqnnekeke 265
                   +r+qrl+ +q ++++++a+   +  + q  +++  +l+ l ++  ++++++++ +++
  CCG91885.1  60 MHERMQRLMDKQDEELKKLANEMNKAPKDQKLDKVVTLLNTLVNQRIQMHEEMKAMHHK 118
                 55788888888888888888888877777777777777777777766666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3315  (0.184896); expected 358.6 (0.02)
Passed bias filter:                     1028  (0.0573373); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 1024.36
//
Query:       CCG91886.1  [L=186]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0012   17.7   1.2     0.0015   17.4   1.2    1.0  1  DUF790         Protein of unknown function (DUF790)
     0.0016   18.4   3.3     0.0028   17.6   3.3    1.5  1  EMP24_GP25L    emp24/gp25L/p24 family/GOLD
      0.002   18.3   0.5       0.94    9.7   0.0    2.2  2  Metal_resist   Heavy-metal resistance
  ------ inclusion threshold ------
      0.013   14.8   2.4      0.019   14.3   2.4    1.1  1  CorA           CorA-like Mg2+ transporter protein
      0.014   15.4   4.8      0.019   15.0   4.8    1.2  1  RRP36          rRNA biogenesis protein RRP36
       0.02   14.2   0.3      0.025   13.9   0.3    1.1  1  DUF1672        Protein of unknown function (DUF1672)
      0.025   15.0   4.2      0.034   14.5   4.2    1.1  1  YlqD           YlqD protein
      0.034   13.7   0.3      0.045   13.3   0.3    1.2  1  CobU           Cobinamide kinase / cobinamide phosphate guany
      0.073   12.4   3.2      0.091   12.1   3.2    1.1  1  FAM76          FAM76 protein
        0.2   10.1   1.9       0.24    9.9   1.9    1.1  1  Het-C          Heterokaryon incompatibility protein Het-C
       0.24   11.5   3.9       0.32   11.1   3.9    1.1  1  DUF848         Gammaherpesvirus protein of unknown function (
       0.34   11.0   3.1        0.5   10.5   3.1    1.2  1  DUF2730        Protein of unknown function (DUF2730)
       0.37    9.3   4.3       0.46    9.0   4.3    1.0  1  FapA           Flagellar Assembly Protein A
       0.39    9.9   3.8       0.52    9.5   3.8    1.1  1  TMPIT          TMPIT-like protein
        1.9    8.0   5.5        4.1    6.9   1.0    1.9  2  Fzo_mitofusin  fzo-like conserved region
        2.2    9.0  10.3        2.6    8.7   5.7    2.7  2  SlyX           SlyX


Domain annotation for each model (and alignments):
>> DUF790  Protein of unknown function (DUF790)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.2   1.3e-06    0.0015      16      92 ..      61     136 ..      55     147 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.3e-06
      DUF790  16 ivpkflkeenlelaaelielfeehvGekrgeleeelkeleeeatdyklvrGLakllereaefetespldpeelReev 92 
                  + + l+++++++++e+ e f++ + ++ +el+e lkel++ a + k v  L+++++r +e ++e + +  ++R+++
  CCG91886.1  61 SEDQLLDANQRAVVSEMQESFRRLLDKQDKELDELLKELKK-APKEKKVDCLTTIITRLIEQRKEMHQEMDAMRSRM 136
                 566889999********************************.789*************9999999888888888775 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   3.3   2.5e-06    0.0028     104     150 ..      99     145 ..      61     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.5e-06
  EMP24_GP25L 104 ykdsakkekletleselkkleekldsikreqkylrereerlrdtnes 150
                   k++ k++k+++l++ + +l+e+ +++++e++++r r ++l+ +++s
   CCG91886.1  99 LKKAPKEKKVDCLTTIITRLIEQRKEMHQEMDAMRSRMRELKSLSQS 145
                  4566779**********************************999988 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00084      0.94       5      73 ..      35     103 ..      31     106 .. 0.75
   2 !    6.7   0.3     0.007       7.9      55      81 ..     118     144 ..     114     148 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00084
                   XXXXXXXXXXXXXXXXXXXXXXTTHHBH.HHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist   5 lNlfllGalvgaalrgpggpppggpargraellraalgLpaeqraelraalrdharelralrrelraar 73 
                   + +++ ++++  + ++p+ p+  +++++++ l   +++  +e ++ +r++l+++ +el +l +el +a 
    CCG91886.1  35 FFFLIGTGIYSLTAQAPPQPHSLKGSSEDQLLDANQRAVVSEMQESFRRLLDKQDKELDELLKELKKAP 103
                   44444556666666666666666666668899999999999*******************999998876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.007
                   HHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Metal_resist  55 lrdharelralrrelraarrelaalla 81 
                   l ++++e+  ++ ++r+  rel++l +
    CCG91886.1 118 LIEQRKEMHQEMDAMRSRMRELKSLSQ 144
                   566777777777777777777777765 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.4   1.7e-05     0.019     115     183 ..      73     140 ..      66     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
        CorA 115 lldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevlkrllakadd 183
                 ++ e+ +++++ll+k ++eldel +el++  k++ ++ l+++ +rl++ r+ +++ ++++ ++++ +++
  CCG91886.1  73 VVSEMQESFRRLLDKQDKELDELLKELKKAPKEKKVDCLTTIITRLIEQRKEMHQEMDAMRSRMR-ELK 140
                 5788999****************************************************998888.333 PP

>> RRP36  rRNA biogenesis protein RRP36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   4.8   1.7e-05     0.019      45     102 ..      75     145 ..      61     153 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-05
       RRP36  45 dlfeknYaFLdeyrekEleelkkelk...kekd.....k.....eeekeelkrelqrlesrekerekkere 102
                 + +++++  L + ++kEl+el kelk   kek+            e+++e+++e++ ++sr++e ++ ++ 
  CCG91886.1  75 SEMQESFRRLLDKQDKELDELLKELKkapKEKKvdcltTiitrlIEQRKEMHQEMDAMRSRMRELKSLSQS 145
                 56788889999***************444344455554145566888888888888888888888876665 PP

>> DUF1672  Protein of unknown function (DUF1672)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   2.3e-05     0.025     166     237 ..      74     149 ..      66     162 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
     DUF1672 166 lkeyrkyyepllnksdkefkkelkqikk...ekkvkanteiettlfstkkeetkkk.tlenvikladelkkekdiP 237
                 + e ++ ++ ll+k+dke  + lk++kk   ekkv   t+i t l  ++ke++++   ++  +   + l ++ ++P
  CCG91886.1  74 VSEMQESFRRLLDKQDKELDELLKELKKapkEKKVDCLTTIITRLIEQRKEMHQEMdAMRSRMRELKSLSQSSSLP 149
                 578999*************999888876111455555566666666666665554313334444444445555555 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   4.2     3e-05     0.034      19      95 ..      75     148 ..      71     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3e-05
        YlqD  19 eelqqqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkqllqqleqvqkLelgsev 95 
                  e+q+++++ +++ dkel++L  ++k++ ke+k    +  ++i +++ ++++e++++++ ++++++++++L   s +
  CCG91886.1  75 SEMQESFRRLLDKQDKELDELLKELKKAPKEKKV---DCLTTIITRLIEQRKEMHQEMDAMRSRMRELKSLSQSSSL 148
                 5899************************988865...68999****************************9987765 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3     4e-05     0.045      59     108 ..      88     139 ..      67     149 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4e-05
        CobU  59 epldlaealkeeek.kevvLvDcltlwltnllleeeaek.veekleeeveel 108
                 + ++l+e+lke +k  +   vDclt+++t+l+ ++++ +   ++++++++el
  CCG91886.1  88 QDKELDELLKELKKaPKEKKVDCLTTIITRLIEQRKEMHqEMDAMRSRMREL 139
                 45688888888666677888*************9764432223444455444 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.2   8.1e-05     0.091     219     289 ..      72     140 ..      41     150 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.1e-05
       FAM76 219 vavtqLkeeiaslkkqleqkdqellekdkkitel.kaellekekelreklkelekeakekieklekkirell 289
                  +v++++e   s ++ l+++d+el e  k++ ++ k ++++  +++ ++l e++ke++++++++++++rel+
  CCG91886.1  72 AVVSEMQE---SFRRLLDKQDKELDELLKELKKApKEKKVDCLTTIITRLIEQRKEMHQEMDAMRSRMRELK 140
                 33455555...56777899999999988888876477788889999***********************996 PP

>> Het-C  Heterokaryon incompatibility protein Het-C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.9   0.00021      0.24     287     344 ..      88     161 ..      54     185 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00021
       Het-C 287 evdeldaaleeaekssssssksalksllsklpgtgddlaeeaeelkakseaqeaena................s 344
                 + +eld+ l+e +k+ ++++ + l++++++l  + +++ +e++ +++++ + ++ ++                +
  CCG91886.1  88 QDKELDELLKELKKAPKEKKVDCLTTIITRLIEQRKEMHQEMDAMRSRMRELKSLSQssslpnafeppaapssN 161
                 33344444444444446668999999999999999999999999988888776666545555555555554432 PP

>> DUF848  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.9   0.00028      0.32      52     129 ..      75     149 ..      61     153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
      DUF848  52 lkrtkeikalveavdteieakkkelslLkklnrkkvarveeLtdkvlelkeevsleldsleeaqeeyqegessetsip 129
                  + +++ + l+ + d+e+++  kel++  +   kkv+ +  +  +  e ++e+++e+d++     e +   s+++s+p
  CCG91886.1  75 SEMQESFRRLLDKQDKELDELLKELKK--APKEKKVDCLTTIITRLIEQRKEMHQEMDAMRSRMRELK-SLSQSSSLP 149
                 456788899999999999999999988..7889***************************99988887.555555665 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00045       0.5      40      93 ..      83     136 ..      70     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
     DUF2730  40 ekveendkrlteletkvenLPtakdlekLkllladlrgelkaleaevrqlshqv 93 
                   ++++dk l+el  ++++ P +k ++ L + ++ l  + k++++e+++++ ++
  CCG91886.1  83 RLLDKQDKELDELLKELKKAPKEKKVDCLTTIITRLIEQRKEMHQEMDAMRSRM 136
                 447899*******************************************98765 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.3   0.00041      0.46     335     408 ..      74     143 ..      57     152 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00041
        FapA 335 lkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeel 408
                 + e+++ ++++l +  +el++l k++kk pk+k+ ++        + +l+e+++++ +e+ +++ ++ elk+  
  CCG91886.1  74 VSEMQESFRRLLDKQDKELDELLKELKKAPKEKKVDC----LTTIITRLIEQRKEMHQEMDAMRSRMRELKSLS 143
                 4566678888888889999999999999999666665....555666677777777777777777776666544 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.8   0.00047      0.52      23      84 ..      69     138 ..      55     149 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00047
       TMPIT  23 qkleelsklqskcskeikkqkkrlkelksslkklkksvk........eeeeeeveelkeelkerkkvlke 84 
                 ++ + +s++q+++++ ++kq k+l el ++lkk  k++k        ++  e+ +e+++e++ +++ ++e
  CCG91886.1  69 NQRAVVSEMQESFRRLLDKQDKELDELLKELKKAPKEKKvdclttiiTRLIEQRKEMHQEMDAMRSRMRE 138
                 56678999*************************9998555555555544444444444444444444444 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.0    0.0036       4.1      93     136 ..      71     116 ..      66     122 .. 0.80
   2 ?    3.5   0.4      0.04        45     112     138 ..     120     146 ..     109     150 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0036
  Fzo_mitofusin  93 hqvqqelsstfarlcqqvdetekeleeeikel..ekeiekleevqk 136
                      v +e+++ f rl  + d+  +el +e+k+   ek+++ l ++++
     CCG91886.1  71 RAVVSEMQESFRRLLDKQDKELDELLKELKKApkEKKVDCLTTIIT 116
                    56899************************99733556666766665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.04
  Fzo_mitofusin 112 etekeleeeikelekeiekleevqkka 138
                    e++ke+++e++++++++++l+++++++
     CCG91886.1 120 EQRKEMHQEMDAMRSRMRELKSLSQSS 146
                    567899999999999999998887765 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.7      0.17   1.9e+02      30      51 ..      71      93 ..      64     106 .. 0.51
   2 ?    8.7   5.7    0.0023       2.6       9      58 ..      98     147 ..      89     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.17
                HHHHHHHHHHHHHHHHT-.XXXX CS
        SlyX 30 qqqidrlqrqlrllaerl.kele 51
                +  ++++q+ +r+l ++  kel+
  CCG91886.1 71 RAVVSEMQESFRRLLDKQdKELD 93
                55555555555555555432222 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXX CS
        SlyX   9 EiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgase 58 
                 E k a  e+ ++ L  ++++  +q +++++++++++ r++el++ s++s 
  CCG91886.1  98 ELKKAPKEKKVDCLTTIITRLIEQRKEMHQEMDAMRSRMRELKSLSQSSS 147
                 6777889999*******************************999877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2286  (0.127503); expected 358.6 (0.02)
Passed bias filter:                     1122  (0.0625802); expected 358.6 (0.02)
Passed Vit filter:                       167  (0.00931452); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 1287.83
//
Query:       CCG91887.1  [L=309]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-26   92.3   0.0    4.4e-26   91.7   0.0    1.3  1  Glycos_transf_2  Glycosyl transferase family 2
    1.2e-14   54.5   0.0    3.4e-14   53.0   0.0    1.8  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
    5.8e-12   46.0   0.0    2.9e-11   43.7   0.0    1.8  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    1.1e-05   25.9   0.0    2.1e-05   24.9   0.0    1.5  1  Glyco_tranf_2_4  Glycosyl transferase family 2
  ------ inclusion threshold ------
       0.15   11.8   0.0       0.25   11.1   0.0    1.3  1  DUF410           Protein of unknown function (DUF410)


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.0   1.2e-29   4.4e-26       1     110 [.       7     112 ..       7     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 1.2e-29
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      +v iptyN ekt+++++ s+l+q  +p++ei+v+++gStD+t+ei+e+++   + v  +  +e+ G a+a+n++l++a+g +i +lD Dd+ +p
       CCG91887.1   7 TVAIPTYNGEKTIEKAILSALNQ-SWPNIEILVINNGSTDKTAEIIERFR---GAVLHVFFKEKIGRAKARNEALQRANGHWIQWLDHDDYLEP 96 
                      599********************.*************************7...455555555566***************************** PP

                      THHHHHHHHHHH.TTC CS
  Glycos_transf_2  95 dwleklvealekdgad 110
                      ++++       + +a 
       CCG91887.1  97 NKIKNHFSLTTELDAI 112
                      ***9987776666554 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   9.4e-18   3.4e-14       1     110 [.       7     110 ..       7     210 .. 0.91

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 9.4e-18
  Glyco_tranf_2_2   1 svviplraseerhyieervlqkakyydeeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfi 94 
                      +v ip +++e++  ie  +l   ++  ++ie++v+++gS++k++e ++ +  + l+v++k++     + a+arN   ++a++  + +lD D++ 
       CCG91887.1   7 TVAIPTYNGEKT--IEKAILSALNQSWPNIEILVINNGSTDKTAEIIERFRGAVLHVFFKEK----IGRAKARNEALQRANGHWIQWLDHDDYL 94 
                      689*********..*****99999999*******************************9999....9*************************** PP

  Glyco_tranf_2_2  95 ssDkfekilklitikk 110
                       ++k+++  +l t ++
       CCG91887.1  95 EPNKIKNHFSLTTELD 110
                      ******9999887664 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   8.1e-15   2.9e-11       1     107 [.       3     101 ..       3     118 .. 0.89
   2 ?    0.0   0.0      0.18   6.6e+02     164     200 ..     155     191 ..     129     221 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 8.1e-15
  Glyco_tranf_2_3   1 prdlavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllv 94 
                      p+ ++v++pt+n e+++++ + s+l+q+ p++e+ v+ ++s+++t+e +e    ++ ++ ++v +++++ g ++k+r  neal+++++ ++  +
       CCG91887.1   3 PPAVTVAIPTYNGEKTIEKAILSALNQSWPNIEILVINNGSTDKTAEIIE----RFRGAVLHVFFKEKI-G-RAKAR--NEALQRANGHWIQWL 88 
                      566********************************************997....688777998888885.5.37777..*************** PP

  Glyco_tranf_2_3  95 DdDtvvePdtlkr 107
                      D D+ +eP+ +k 
       CCG91887.1  89 DHDDYLEPNKIKN 101
                      *********9875 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.18
  Glyco_tranf_2_3 164 gslirrevlkelegldplflltdDyelglrlrragfr 200
                      g l+  e    ++g+     l+dDyel  r+ + + r
       CCG91887.1 155 GYLWKKESAIKIGGWSDDAPLFDDYELVGRAIQSNLR 191
                      5677778888899998889999***999999887665 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0     6e-09   2.1e-05      21      84 ..      35      94 ..      13     104 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 6e-09
  Glyco_tranf_2_4 21 rilvydndstDgtrailkelpe.vkllhvdksyederrqvellkallaryaeadwvlvvDaDEfl 84
                     +ilv++n+stD+t++i+++    v ++ +++++       ++++++l+r+ +++w+  +D D +l
       CCG91887.1 35 EILVINNGSTDKTAEIIERFRGaVLHVFFKEKIG----RAKARNEALQRA-NGHWIQWLDHDDYL 94
                     79*****************866255777777776....477999999995.9**********997 PP

>> DUF410  Protein of unknown function (DUF410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.8e-05      0.25      65     101 ..     214     252 ..     187     268 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.8e-05
      DUF410  65 p.....erkkfikaaikwSakkgekkaGdpeLhhllaklllk 101
                       ++kk+++++++w  ++g   + dpeL+  ++k+++ 
  CCG91887.1 214 AldfidQKKKCMDRMVQWLVQTG---RMDPELQIEIGKAYFL 252
                 24455589***************...9***********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2378.53
//
Query:       CCG91888.1  [L=317]
Description: putative Glycosyl transferase family 2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-24   85.7   0.0    8.3e-24   84.3   0.0    1.8  2  Glycos_transf_2  Glycosyl transferase family 2
    7.7e-14   51.8   0.0    1.1e-13   51.3   0.0    1.3  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
    3.7e-08   33.5   0.0    5.5e-07   29.7   0.0    2.0  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    2.7e-05   24.6   0.1    7.6e-05   23.1   0.0    1.8  2  Glyco_tranf_2_4  Glycosyl transferase family 2
     0.0013   18.3   0.0     0.0028   17.1   0.0    1.5  1  Glyco_transf_21  Glycosyl transferase family 21
     0.0014   18.5   0.0     0.0023   17.9   0.0    1.3  1  Glyco_trans_2_3  Glycosyl transferase family group 2
  ------ inclusion threshold ------
       0.96    9.8   3.0        1.7    8.9   3.0    1.4  1  DUF737           Protein of unknown function (DUF737)
        3.4    7.5   6.9       0.46   10.3   0.4    2.8  3  Sas6_CC          Sas6/XLF/XRCC4 coiled-coil domain


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   3.7e-27   8.3e-24       2     166 ..       7     189 ..       6     193 .. 0.81
   2 ?   -2.6   0.0       1.8   4.1e+03      96     107 ..     227     238 ..     223     277 .. 0.78

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 3.7e-27
                      EEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-TT CS
  Glycos_transf_2   2 vviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdpd 95 
                      + ip+yN  k + +tles+++q  ++++eiiv+D gStDet++il ++    +++++i +++ v  a ++n  l +atg++i +lD Dd+  ++
       CCG91888.1   7 IGIPAYNPGKWIIQTLESVISQ-AWEKKEIIVIDSGSTDETPSILNKYK---DKIKLISLKKTVDTAESRNLILLEATGEWIQYLDHDDYLVEG 96 
                      78********************.*************************5...7***************************************** PP

                      HHHHHHHHHHH...TTCEEEEEEEEEECCCCCCCHC-SS....................EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHH CS
  Glycos_transf_2  96 wleklvealekd..gadvvlgqrprifgetdeiernkrv....................generlyfkerkrslkgnlsfeigsaallrreal 166
                      +++   e++++    adv +  +++  ++++    + +                        ++ +++   +  +++  + +  ++l++r + 
       CCG91888.1  97 KIKTQFEEAKEQidSADVLYSPTYVEIWKNGASILQNNLlgadsykdplilwlswdmpqIGSYIWRKQSLLKIGGWDNLHLCEDYSLYMRAIT 189
                      *********995545555555555555555555544443777777777777777777766666666666677777777777777777777766 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.8
                      HHHHHHHHHHH. CS
  Glycos_transf_2  96 wleklvealekd 107
                       le+++e+l+k+
       CCG91888.1 227 LLEEMIEYLKKE 238
                      688888888873 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   4.8e-17   1.1e-13       8     227 ..      11     216 ..       4     264 .. 0.76

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 4.8e-17
  Glyco_tranf_2_2   8 aseerhyieervlqkakyydeeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfissDkfek 101
                      a +  ++i +++    ++  e+ e+iv+d gS++++ + +++ +d+ +l++lk++       a +rN+   +a ++ + +lD D++    k++ 
       CCG91888.1  11 AYNPGKWIIQTLESVISQAWEKKEIIVIDSGSTDETPSILNKYKDKIKLISLKKT----VDTAESRNLILLEATGEWIQYLDHDDYLVEGKIKT 100
                      4455579*****999999999******************************8766....7889**************************99999 PP

  Glyco_tranf_2_2 102 ilklitikklrenid.aavvlpvvdlnkeds.evlkdvedltassrvledllaakstlvkffapssssilinrraflevGGyDErfrGhgaEDf 193
                      + +     + +e id a v ++ ++    ++   + + +     ++  +d l+    +    +p+  s + +++ +l++GG+D ++  h  ED+
       CCG91888.1 101 QFE-----EAKEQIDsADVLYSPTYVEIWKNgASILQNN--LLGADSYKDPLI---LWLSWDMPQIGSYIWRKQSLLKIGGWD-NL--HLCEDY 181
                      999.....5555555156777666554333302333333..334444456666...477777888888999***********9.67..99**** PP

  Glyco_tranf_2_2 194 dlllR.lakaikslekmpvellykarakslsnykG 227
                       l++R ++ ++k++  +++   y+   +  +  + 
       CCG91888.1 182 SLYMRaITNKLKFVYCPTPGAVYRVGHRRSRAVSH 216
                      ****9678899999999999999877666664443 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   2.5e-10   5.5e-07       1     212 [.       3     206 ..       2     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.5e-10
  Glyco_tranf_2_3   1 prdlavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllv 94 
                      p  +++ +p++n  + +  +les+++q+    e++v++ +s++et + +      ++d +++++  ++    t+ sr  n  l  ++++++  +
       CCG91888.1   3 PK-VTIGIPAYNPGKWIIQTLESVISQAWEKKEIIVIDSGSTDETPSILNK----YKD-KIKLISLKKTVD-TAESR--NLILLEATGEWIQYL 87 
                      44.9*******************************************9975....***.9****9988554.56666..77788899******* PP

  Glyco_tranf_2_3  95 DdDtvvePdtlkrllqff..ltpkvgavgtpvfllnrstlvsal.galefaerhlrflaarralgvltlnGsgslirrevlkelegldplfllt 185
                      D D+ +  + +k +   +  + +++++++ p +++  ++  s l ++l  a+ + + l ++++ + +   Gs   +r + l  ++g+d   +l 
       CCG91888.1  88 DHDDYLVEGKIKTQFEEAkeQIDSADVLYSPTYVEIWKNGASILqNNLLGADSYKDPLILWLSWDMPQ-IGS-YIWRKQSLLKIGGWDN-LHLC 178
                      ******99999998888866556999**9999986544444444266677788888888888888875.566.579*************.**** PP

  Glyco_tranf_2_3 186 dDyelglrlrragfrtayvpga.avrev 212
                      +Dy+l +r+  ++ + +y+p + av++v
       CCG91888.1 179 EDYSLYMRAITNKLKFVYCPTPgAVYRV 206
                      ******************8865235555 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.4e-08   7.6e-05      15      85 ..      28      94 ..      12     103 .. 0.80
   2 ?   -2.1   0.0       2.6   5.9e+03      61      61 ..     244     244 ..     205     286 .. 0.61

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.4e-08
  Glyco_tranf_2_4 15 lalgfdrilvydndstDgtrailkelpe.vkllhvdksyederrqvellkallaryaeadwvlvvDaDEflv 85
                      a+  ++i+v+d +stD+t  il ++++ +kl+  +k ++      e ++ +l + a ++w+ ++D D +lv
       CCG91888.1 28 QAWEKKEIIVIDSGSTDETPSILNKYKDkIKLISLKKTVD----TAESRNLILLE-ATGEWIQYLDHDDYLV 94
                     3456689******************9665********996....57788888877.599***********98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.6
  Glyco_tranf_2_4  61 l 61 
                       
       CCG91888.1 244 T 244
                      1 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.3e-06    0.0028     105     156 ..     158     207 ..     156     222 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.3e-06
  Glyco_transf_21 105 smalrreaLeaiGGfealadeLAeDyalgkllraaGlkvvlspapiaqtsvp 156
                      s+++r++ L +iGG      +L+eDy+l ++   + lk+v +p+p a   v+
       CCG91888.1 158 SYIWRKQSLLKIGGWDN--LHLCEDYSLYMRAITNKLKFVYCPTPGAVYRVG 207
                      79***************..59***********************95433444 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     1e-06    0.0023      77     126 ..     159     207 ..     153     246 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1e-06
  Glyco_trans_2_3  77 aflrrsalqevggwdgdessvsEDfdmglrlqrkGyrvrfvpes.lvkeks 126
                      +++r + l ++ggwd  + ++ ED+++ +r+ ++ ++++++p + +v++++
       CCG91888.1 159 YIWRKQSLLKIGGWD--NLHLCEDYSLYMRAITNKLKFVYCPTPgAVYRVG 207
                      78999**********..99***********************998676654 PP

>> DUF737  Protein of unknown function (DUF737)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.0   0.00077       1.7     116     184 ..     224     289 ..     213     292 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00077
      DUF737 116 reaaqeelteailrerlstedErlkaqllelerkarqLeekekeLkkqdafYkeqlakLeeknaefykv 184
                   a  ee+ e + +e++ te   ++a++l  +r  + L  k  +L+  da++k++ + Le+k +  y+ 
  CCG91888.1 224 HDALLEEMIEYLKKEKMLTE--TRQAAIL-KNRFQKFLAYKSVDLSMADAYFKKHKELLEQKLSFRYRF 289
                 56667788888888888775..5566666.5788899*************************9999985 PP

>> Sas6_CC  Sas6/XLF/XRCC4 coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.89     2e+03      15      24 ..     221     230 ..     218     231 .. 0.88
   2 ?   -1.0   0.2      0.73   1.6e+03      14      21 ..     234     241 ..     232     245 .. 0.77
   3 ?   10.3   0.4    0.0002      0.46      14      27 ..     271     284 ..     270     285 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.89
                 HHHHHHHHHH CS
     Sas6_CC  15 lKeeKqlLeq 24 
                 lK++  lLe+
  CCG91888.1 221 LKDHDALLEE 230
                 9*******97 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.73
                 HHHHHHHH CS
     Sas6_CC  14 slKeeKql 21 
                 +lK eK+l
  CCG91888.1 234 YLKKEKML 241
                 79***987 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHHHHH CS
     Sas6_CC  14 slKeeKqlLeqkLk 27 
                 ++K +K+lLeqkL+
  CCG91888.1 271 YFKKHKELLEQKLS 284
                 68***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       936  (0.0522059); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2482.48
//
Query:       CCG91889.1  [L=267]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-08   32.5   0.0    9.9e-08   32.0   0.0    1.3  1  Glycos_transf_2  Glycosyl transferase family 2
    4.3e-05   23.9   0.1    0.00013   22.4   0.1    1.8  1  Glyco_tranf_2_4  Glycosyl transferase family 2
  ------ inclusion threshold ------
      0.028   13.8   0.0      0.037   13.4   0.0    1.2  1  Glyco_transf_49  Glycosyl-transferase for dystroglycan


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.7e-11   9.9e-08       3     144 ..       9     142 ..       7     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1.7e-11
                      EEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-TTH CS
  Glycos_transf_2   3 viptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdpdw 96 
                       +++ N +++l+++l s+++       eii+v +  tDet+++++ +     + rv  r++        n +l+ a+ +++l lDaD ++++  
       CCG91889.1   9 TMIAKNQAHNLPKSLGSVASW----VSEIILVINDCTDETESVAKLY-----GARVEERPWS-CRRDQKNIALDLASYQWVLGLDADEVVSEAL 92 
                      58999****************....**********************.....8999999988.999**************************** PP

                      HHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS..EEEECCHCCCCH CS
  Glycos_transf_2  97 leklvealekdgadvvlgqrprifgetdeiernkrv..generlyfkerk 144
                       +++ +++ +d  + v + +pr+ +  d++  +  +   +n rl++k + 
       CCG91889.1  93 RQDIHDFFREDHLKYVGAYFPRKTWLIDRWITHGDFypDYNLRLFRKDYG 142
                      **********9999999999999998888888877655444444444444 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   2.2e-08   0.00013       1      84 [.      13      88 ..      13      99 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.2e-08
  Glyco_tranf_2_4  1 rneadiLpeflahhlalgfdrilvydndstDgtrailkelpevkllhvdksyederrqvellkallaryaeadwvlvvDaDEfl 84
                     +n a+ Lp+ l+   ++ +++i+++ nd+tD+t  + k  + +++   + +++ +r q ++   l    a  +wvl +DaDE++
       CCG91889.1 13 KNQAHNLPKSLGSVASW-VSEIILVINDCTDETESVAKL-YGARVE--ERPWSCRRDQKNIALDL----ASYQWVLGLDADEVV 88
                     799**************.**************9887665.444444..34444334454443333....4559*********87 PP

>> Glyco_transf_49  Glycosyl-transferase for dystroglycan
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.2e-06     0.037     122     161 ..      67     106 ..      35     135 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.2e-06
  Glyco_transf_49 122 RNvARkaaqtefvlvlDidlvpseglvekfleflarekak 161
                       N+A + a+ ++vl lD d v+se l++++ +f++++++k
       CCG91889.1  67 KNIALDLASYQWVLGLDADEVVSEALRQDIHDFFREDHLK 106
                      4**********************************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1952.46
//
Query:       CCG91890.1  [L=261]
Description: Polysaccharide deacetylase family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-28   99.2   0.0    2.1e-28   98.7   0.0    1.2  1  Polysacc_deac_1  Polysaccharide deacetylase
    6.1e-06   25.7   0.0    8.1e-06   25.3   0.0    1.1  1  Glyco_hydro_57   Glycosyl hydrolase family 57
  ------ inclusion threshold ------
      0.082   12.6   0.0       0.13   11.9   0.0    1.3  1  DUF2334          Uncharacterized protein conserved in bacteri


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   3.5e-32   2.1e-28       8     122 ..      86     216 ..      81     218 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 3.5e-32
                      EEEEEEEESSCSCHHHHHHHHHHCT--EEEEE-HHHHCH-................HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHH CS
  Polysacc_deac_1   8 svalTfDdgprdntteilpvLkkykvkatffvigglvedy................pdevremaasGveignHtinhsnlkrlseeevrreier 85 
                       v + fDd+++++ t++lp+L++  ++a +fv+ g++++                 ++e++e+ asG eig+Ht++h++l  ls++e+++eie 
       CCG91890.1  86 GVIISFDDAYQSVFTRALPLLNRFRMRAILFVVAGYIGKTnewdrplgepahklmtEEEIKEWIASGQEIGSHTFSHPHLPLLSSKELKKEIED 179
                      689*********************************9998999*************************************************** PP

                      HHHHHHHHHS----EEE-GGGEE-HHHHHHHHHTT.E CS
  Polysacc_deac_1  86 akdalrkalgreprlfryPygsasatvlevarelgfa 122
                      +k++l++ +  + r+f +Pyg+++++ l++++++g++
       CCG91890.1 180 SKKYLEDTFSVPIRHFSFPYGQFTKQCLDIVEQAGYE 216
                      ***********************************97 PP

>> Glyco_hydro_57  Glycosyl hydrolase family 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.4e-09   8.1e-06     122     203 ..     144     223 ..     121     253 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.4e-09
                     HHHHHHHCTSEEEEEE-TT-B-GGG-S-HHHHHHHHHHHHHHHHHHHSS--SBEE-GGG-B--SHHHHHHHTT--EEEE-C- CS
  Glyco_hydro_57 122 lfrelqesgqvElltspyyHpllpllpdsedieaqvkkarelyeeyfgqePrgfwlpElavspeileilaelGfeylftdel 203
                     +++e + sgq E+ + +++Hp lpll+  ++++++++ +++++e++f +  r f  p   ++++ l i++++G+e  +  ++
      CCG91890.1 144 EIKEWIASGQ-EIGSHTFSHPHLPLLSS-KELKKEIEDSKKYLEDTFSVPIRHFSFPYGQFTKQCLDIVEQAGYESACQIGE 223
                     6777778887.9****************.**********************************************9886554 PP

>> DUF2334  Uncharacterized protein conserved in bacteria (DUF2334)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.1e-05      0.13      14     140 ..      95     215 ..      87     235 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.1e-05
     DUF2334  14 dleklkeiadyldkegipfsvavIPrykdp....ktgskvnlsenpefvevLkylqakGgeialHGYtHqygtvksevsgegfeflseseakeriekGi 108
                 +   + +   +l++ +++ +++v+  y+ +    + +   + +++  + e +k++ a G+ei+ H ++H +              ls +e k+ ie+++
  CCG91890.1  95 YQSVFTRALPLLNRFRMRAILFVVAGYIGKtnewDRPLG-EPAHKLMTEEEIKEWIASGQEIGSHTFSHPHLP-----------LLSSKELKKEIEDSK 181
                 556667777788888999999999999999654322222.23355666789********************82...........367788888888888 PP

     DUF2334 109 eilkklg.ikpkgFeaPhyaaseetykalkky.f 140
                 + l++   ++++ F +P  +++++ + ++++  +
  CCG91890.1 182 KYLEDTFsVPIRHFSFPYGQFTKQCLDIVEQAgY 215
                 8888876468888888888888888888886555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2036.91
//
Query:       CCG91891.1  [L=313]
Description: Predicted glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-23   83.3   0.0    2.4e-23   82.8   0.0    1.2  1  Glycos_transf_2  Glycosyl transferase family 2
    2.6e-14   53.7   0.0    5.4e-14   52.6   0.0    1.5  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    6.7e-11   42.5   0.0    1.8e-10   41.0   0.0    1.7  1  Glyco_trans_2_3  Glycosyl transferase family group 2
    2.1e-07   30.8   0.0    3.4e-07   30.2   0.0    1.3  1  Glyco_tranf_2_5  Glycosyltransferase like family
    2.8e-07   30.3   0.1    9.2e-07   28.6   0.1    1.7  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
     0.0079   16.7   0.0      0.026   15.0   0.0    1.9  2  Glyco_tranf_2_4  Glycosyl transferase family 2
  ------ inclusion threshold ------
      0.031   13.7   0.0       0.19   11.2   0.0    2.0  1  Glyco_transf_21  Glycosyl transferase family 21
      0.036   13.7   0.2      0.062   13.0   0.2    1.4  1  Glyco_transf_7C  N-terminal domain of galactosyltransferase


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   1.1e-26   2.4e-23       1     169 [.       6     185 ..       6     186 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 1.1e-26
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      s++i+++N + +l+e+l s+ + ++ + + +iv D+gS+D+t+e+l+++   +p v ++r e n G+a+a+n ++ +a+gdy+l+l++D   + 
       CCG91891.1   6 SIIIVSCNTQLLLQEALLSIEKSQDSLPKLVIVFDNGSKDGTEEMLKKF---FPWVLYLRSETNLGFAKAVNSAAVHAQGDYLLLLNSDARLEA 96 
                      8*******************9999*************************...69**************************************** PP

                      THHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS..............EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHC CS
  Glycos_transf_2  95 dwleklvealekdgadvvlgqrprifgetdeiernkrv..............generlyfkerkrslkgnlsfeigsaallrrealeel 169
                      d +++ ++++e + + +v+g+   ++++t +++ + +                +  ++++ke+k + ++ +  +ig ++l+r+++ +el
       CCG91891.1  97 DSIKQAIRWMETHKECAVCGAQLLNEDGTLQNSIANFPtlltelgnksllrkLFPKKFPGKENKPKNPQAVESVIGAFFLVRKKIWDEL 185
                      *********************************99887***********9999999999999999999999999******999998776 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   2.4e-17   5.4e-14       4     218 ..       5     229 ..       2     240 .. 0.78

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 2.4e-17
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesll.aqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDd 96 
                      l++++++ n +  l e l s+  +q+  +  v+v++++s+++t e+++ +   +p v   +++ + nlg+   + a+n a  ++++d++ll+++
       CCG91891.1   5 LSIIIVSCNTQLLLQEALLSIEkSQDSLPKLVIVFDNGSKDGTEEMLKKF---FPWV--LYLRSETNLGF---AKAVNSAAVHAQGDYLLLLNS 90 
                      899999999999999999999944456778999999***********996...9985..66778888886...55669**************** PP

  Glyco_tranf_2_3  97 DtvvePdtlkrllqffltpkvgavgtpvfllnrstl................vsalgalefaerhlrflaar...........ralgvltlnGs 163
                      D+++e d++k++ ++++t+k  av + ++l+ + tl                 s l +l+                       +   v  + G+
       CCG91891.1  91 DARLEADSIKQAIRWMETHKECAVCGAQLLNEDGTLqnsianfptlltelgnKSLLRKLF-----------PkkfpgkenkpkNPQAVESVIGA 173
                      ****************77766667777777777766444555555544444433334444...........144444445443555677778** PP

  Glyco_tranf_2_3 164 gslirrevlkelegldp.lflltdDyelglrlrragfrtayvpgaavrevfpsslk 218
                      ++l+r ++++el+gld+  f +++  + ++r+ + g++++y+p++ v++ ++++ k
       CCG91891.1 174 FFLVRKKIWDELGGLDErFFFFFEETDFCFRVLQKGYQVYYLPQVKVWHGQGKTAK 229
                      *****************666666**************************8776644 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   8.1e-14   1.8e-10       1     170 [.      84     279 ..      84     301 .. 0.71

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 8.1e-14
  Glyco_trans_2_3   1 iilllDaDtvlppdclreiaaela.spevaivqgpvlvm..nvanwleelaalffaedhgkdilvrealgrvvp..............svGsga 77 
                      + lll +D +l +d++++++++++ + e+a++  + l +    +n ++++ +l + e   +  l r+ + + +p              + G+ +
       CCG91891.1  84 YLLLLNSDARLEADSIKQAIRWMEtHKECAVCGAQLLNEdgTLQNSIANFPTLLT-ELG-NKSLLRKLFPKKFPgkenkpknpqavesVIGAFF 175
                      5799********************5577776655555544334677777777666.455.55699999999999*************555**** PP

  Glyco_trans_2_3  78 flrrsalqevggwdgdessvsEDfdmglrlqrkGyrvrfvpeslvkekspltlraalr........QrkRwayGcel....eklillv.rllgy 158
                      ++r + ++e+gg d ++++  E +d+++r ++kGy+v++ p++ v+ +   t ++al          r++++         e lil+v  ll++
       CCG91891.1 176 LVRKKIWDELGGLDERFFFFFEETDFCFRVLQKGYQVYYLPQVKVWHGQGKTAKTALVearieywkSRYKYFKI--HrpypEFLILKVgLLLRL 267
                      *******************************************9988888885555552222221122333333..022222222222122233 PP

  Glyco_trans_2_3 159 lgsllwsalplh 170
                       +sl++++l+ +
       CCG91891.1 268 SFSLIFESLLYL 279
                      333333333333 PP

>> Glyco_tranf_2_5  Glycosyltransferase like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.5e-10   3.4e-07      39     196 ..      67     229 ..      58     244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.5e-10
  Glyco_tranf_2_5  39 ksiaeaynkalsasdakykvYlhqDvliinkdfikdlleiFkkdkkiGmiGvvGakslpesgvwweskkkvgkvietskeeakelra....... 125
                         a+a+n a+ +++  y++ l+ D  + + d ik+ ++ ++ +k++    v+Ga+ l e+g++ +s  +  ++ ++  +++   +        
       CCG91891.1  67 LGFAKAVNSAAVHAQGDYLLLLNSDARL-EADSIKQAIRWMETHKECA---VCGAQLLNEDGTLQNSIANFPTLLTELGNKSLLRKLfpkkfpg 156
                      5789**********************97.788999***********96...689********99877776666655544443322222344566 PP

  Glyco_tranf_2_5 126 .eeeeseyeeVeaidGllmatqydv.....pwredlftgfhfYdvsqslefekagykvvVpnqekpWvihdsgfkkl 196
                       e++ +++++Ve + G ++++++ +       +e  f  f f  +++++++ ++gy+v+   q k+W  h +g+ + 
       CCG91891.1 157 kENKPKNPQAVESVIGAFFLVRKKIwdelgGLDERFF--FFFEETDFCFRVLQKGYQVYYLPQVKVW--HGQGKTAK 229
                      7888899******************666666666643..677899**********************..77665544 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   4.1e-10   9.2e-07      13     202 ..      16     208 ..       6     222 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.1e-10
  Glyco_tranf_2_2  13 hyieervlqkakyydeeielivv.ddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfissDkfekilkl 105
                        ++e +l + k  d  ++l++v d+gS + + e ++++    l  yl+ e  +  + a+a N  a +a++d++l l++D     D +++ ++ 
       CCG91891.1  16 LLLQEALLSIEKSQDSLPKLVIVfDNGSKDGTEEMLKKFFPWVL--YLRSE--TNLGFAKAVNSAAVHAQGDYLLLLNSDARLEADSIKQAIRW 105
                      36899999999999**9997654399999999999999987654..66566..78999********************************9998 PP

  Glyco_tranf_2_2 106 itikklrenidaavvlpvvdlnkedsevlkdvedltassrvledllaakstlvk......ffapss..ssilinrraflevGGyDErfrGhgaE 191
                      +++ k   +  a +      l +  +++     +l  +  +l++l+  k +  +        ++s     +l++++   e+GG DErf     E
       CCG91891.1 106 METHKECAVCGAQLLNEDGTLQNSIANFPTLLTEL-GNKSLLRKLFPKKFPGKEnkpknpQAVESVigAFFLVRKKIWDELGGLDERF-FFFFE 197
                      88888788888887777666666666554444444.44556678888777766677778755555344899*****************.56788 PP

  Glyco_tranf_2_2 192 DfdlllRlaka 202
                      + d+  R++++
       CCG91891.1 198 ETDFCFRVLQK 208
                      88888888765 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-05     0.026      22      81 ..      36      91 ..      13     108 .. 0.74
   2 ?   -2.0   0.0       2.4   5.5e+03      31      74 ..     200     244 ..     187     248 .. 0.51

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
  Glyco_tranf_2_4 22 ilvydndstDgtrailkel.pevkllhvdksyederrqvellkallaryaeadwvlvvDaD 81
                     ++v+dn+s+Dgt ++lk+  p v  l+++++     ++ ++  a+   +a++d++l + +D
       CCG91891.1 36 VIVFDNGSKDGTEEMLKKFfPWVLYLRSETNLG---FAKAVNSAA--VHAQGDYLLLLNSD 91
                     79****************634455555555443...333333333..45689999999888 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.4
  Glyco_tranf_2_4  31 Dgtrailkelpevkllhvdksyed.errqvellkallaryaeadw 74 
                      D   ++l++ ++v  l+ +k +++  +++ ++l ++  +y+++++
       CCG91891.1 200 DFCFRVLQKGYQVYYLPQVKVWHGqGKTAKTALVEARIEYWKSRY 244
                      555556666444444444444433123334455555556666555 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.4e-05      0.19      27     151 ..      78     220 ..      62     241 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.4e-05
  Glyco_transf_21  27 eaakydllvisDsdvrvkpdyLeellaaledpkvglVtslpvgsdakglaaaleaafl...ntlagvlqa.....kl..s........glgfav 102
                        a+ d+l+++ sd+r+++d +++  + +e+ k   V+++ +  +  +l + +++      + + + l +     k+  +        +++ ++
       CCG91891.1  78 VHAQGDYLLLLNSDARLEADSIKQAIRWMETHKECAVCGAQLLNEDGTLQNSIANFPTlltELGNKSLLRklfpkKFpgKenkpknpqAVESVI 171
                      3499**************************************9999987777666543333222222222122222233134444454788999 PP

  Glyco_transf_21 103 GksmalrreaLeaiGGfealadeLAeDyalgkllraaGlkvvlspapia 151
                      G++ ++r+++ +++GG+ +      e + +  ++ ++G++v+  p++ +
       CCG91891.1 172 GAFFLVRKKIWDELGGLDERFFFFFEETDFCFRVLQKGYQVYYLPQVKV 220
                      9999999999999999987666666666666666666666666666655 PP

>> Glyco_transf_7C  N-terminal domain of galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   2.8e-05     0.062      17      66 ..     168     216 ..     156     251 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-05
  Glyco_transf_7C  17 ekyfgGvlalrkedfekiNGfsntfwgWGgEDdelyaRlakkgleierpe 66 
                      e+++g  +++rk+ + +++G++++f+ +  E ++++ R+++kg+++  ++
       CCG91891.1 168 ESVIGAFFLVRKKIWDELGGLDERFFFF-FEETDFCFRVLQKGYQVYYLP 216
                      7789999******************999.899************987644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2418.43
//
Query:       CCG91892.1  [L=379]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-25   89.8   0.0    2.1e-23   82.7   0.0    2.2  2  Glycos_transf_1  Glycosyl transferases group 1
    1.7e-18   67.3   0.0    3.7e-18   66.2   0.0    1.5  1  Glyco_trans_1_4  Glycosyl transferases group 1
    5.3e-12   46.1   0.3    7.5e-11   42.3   0.3    2.4  1  Glyco_transf_4   Glycosyltransferase Family 4
    4.1e-07   30.1   0.0    8.4e-07   29.1   0.0    1.5  1  Glyco_trans_4_2  Glycosyl transferase 4-like


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0035        15      47     121 ..      34     108 ..       2     116 .. 0.81
   2 !   82.7   0.0   4.7e-27   2.1e-23       5     155 ..     191     341 ..     188     358 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0035
                      CEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCH.SSSHHHHHHCESEEEEEESS..BSS-HHHHHHHHTT--EEE CS
  Glycos_transf_1  47 nvklviaGngeeekelkklaeelelsdnviflgevs.redleellknadifvlpsis..EgfGivllEAmaaglpvia 121
                      ++ +++a   ++++el++l e +++ ++v++ +++s   +l++++++  i ++ ++   + +++ +  ++aa++p i+
       CCG91892.1  34 EIPVIVAC--PQRAELSSLLEDYGI-ETVHWEKNLSgIFQLWKIINSREISIVHAHHgrDYWPTIVAGSLAANKPKIV 108
                      55555555..8999***********.9**************************9999999999999999999999887 PP

  == domain 2  score: 82.7 bits;  conditional E-value: 4.7e-27
                      HHHHTTTTTT-EEEEEESS-TTT..TTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEE CS
  Glycos_transf_1   5 krkklgknekkkiilsvgrleke..KgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadif 96 
                       r+klg+ e+  ++ ++g  +    Kg+  +i+a+ +++k l p+ +++++G g++++ l+++++++ l+d+ +++ + s  ++e+++++ d++
       CCG91892.1 191 LRNKLGIEEEHFLFGMIGSYDFPvgKGQLEFIEAAYQVQK-LLPKSRFLLIGRGNMQQLLEEKIKSYSLQDHFFLIPHNS--EIENWINALDCL 281
                      5889999999999999999876557*************77.5**************************************..************ PP

                      EEEESS.BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHH CS
  Glycos_transf_1  97 vlpsis.EgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairkl 155
                      v+p+i  E+fG+v+lEA+a+g+pvias   g++e ++  + G l++p ++++l +a+ ++
       CCG91892.1 282 VHPAIAtEAFGLVILEAFACGKPVIASFLDGIPEAFEACQFGRLIPPWSIQELCQAMVDI 341
                      ***********************************************9999998887665 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   8.3e-22   3.7e-18       4     130 ..     204     340 ..     201     343 .. 0.88

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 8.3e-22
                      EEEES--.-GG.GTHHHHHHHHHHHH.H.H.EEEEEES---..HHHHHHHT..T-T.TEEEE---THHHHHHHH-SEEEE--...---SHHHHH CS
  Glyco_trans_1_4   4 ilfvGrl.eenvkgvdllleavpllrkk.d.vrlvivGdgprpeeleelaa..gleerveftGfvedlaellaaadvfvaPs...egfglkllE 89 
                      ++++G++  +  kg+  ++ea+ +++k  +  r++++G+g++++ lee+++   l++++ +  + ++++++++a d++v P    e fgl++lE
       CCG91892.1 204 FGMIGSYdFPVGKGQLEFIEAAYQVQKLlPkSRFLLIGRGNMQQLLEEKIKsySLQDHFFLIPHNSEIENWINALDCLVHPAiatEAFGLVILE 297
                      567888866677**************666369********95568898887789999999999889******************99******** PP

                      HHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHH CS
  Glyco_trans_1_4  90 amaaglpvVatdvggiaevv..gengllvppgdpealaeailr 130
                      a+a+g+pv+a+ + gi+e+    + g l+pp + ++l +a+++
       CCG91892.1 298 AFACGKPVIASFLDGIPEAFeaCQFGRLIPPWSIQELCQAMVD 340
                      ******************99644779**************986 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.3   1.7e-14   7.5e-11       2     170 .]      17     182 ..      16     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 1.7e-14
  Glyco_transf_4   2 GGverhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrr.rl 95 
                     GG  + +l Lar+L ++ + V v +p++ + +   ++++++ +         + ++l+ +++l++++   ++ +vHah+    +   +a  + + 
      CCG91892.1  17 GGTDNQCLLLARGLKELEIPVIVACPQRAELSSLLEDYGIETV--------HWEKNLSGIFQLWKIINSREISIVHAHHGRDYWPTIVAGSLaAN 103
                     999999*******************999988777733333333........45689999*******************98777777777777667 PP

  Glyco_transf_4  96 giplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelreryg............vpp......ekitVipnGvDler 170
                     ++++Vl+ H               s+  +    +ll ++d+++avS++t++ l++  +                     +ki Vi+ G+D++r
      CCG91892.1 104 KPKIVLSRHMAK------------SPGSWISKHYLLESCDCLVAVSHFTKKVLIQ-GDydplcpikerhqR-DpllgdhRKIKVIYGGIDTQR 182
                     999999999888............34444444455999*****************.333366665555441.056666799999999999987 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.9e-10   8.4e-07      16     108 ..      26     113 ..      13     126 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.9e-10
  Glyco_trans_4_2  16 lakeLakrgyeVhvitpkkga.kdeleaegihvhrlkvdrkgpleylk.afklkklikkikPDvvhahya...kpygllgslaarlsgvipvvl 104
                      la++L++  + V v++p+  + +  le++gi+   ++       ++l+ +f+l+k+i+ +++ +vhah     +p +++gsla   ++++++vl
       CCG91892.1  26 LARGLKELEIPVIVACPQRAElSSLLEDYGIETVHWE-------KNLSgIFQLWKIINSREISIVHAHHGrdyWPTIVAGSLA---ANKPKIVL 109
                      67889999999******8888799999*****99999.......8888799*****************984447778999998...5569**** PP

  Glyco_trans_4_2 105 svwG 108
                      s ++
       CCG91892.1 110 SRHM 113
                      *996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3094.89
//
Query:       CCG91893.1  [L=348]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   13.1   0.1       0.29   11.6   0.1    1.7  1  STPPase_N  Serine-threonine protein phosphatase N-terminal do


Domain annotation for each model (and alignments):
>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.6e-05      0.29       5      30 ..     123     150 ..     121     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.6e-05
   STPPase_N   5 IerLl..evrgkpggkkvqLseaEIrql 30 
                 I++Ll  ++r kpg++ ++Ls++EI+ql
  CCG91893.1 123 IKKLLqeAFRVKPGRSSINLSTEEIKQL 150
                 99***744666***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2587.82
//
Query:       CCG91894.1  [L=257]
Description: 3-methyl-2-oxobutanoate hydroxymethyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-90  302.4   0.0    2.8e-90  302.2   0.0    1.0  1  Pantoate_transf  Ketopantoate hydroxymethyltransferase
    7.8e-10   38.6   0.1    1.2e-09   38.0   0.1    1.3  1  PEP_mutase       Phosphoenolpyruvate phosphomutase
  ------ inclusion threshold ------
       0.05   12.8   0.1          3    7.0   0.0    2.2  2  NanE             Putative N-acetylmannosamine-6-phosphate epi
      0.075   12.8   0.1       0.15   11.9   0.0    1.4  1  DUF429           Protein of unknown function (DUF429)
      0.077   12.4   0.1        0.2   11.1   0.0    1.6  2  His_biosynth     Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> Pantoate_transf  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.2   0.0   7.7e-94   2.8e-90       2     254 ..       6     256 ..       5     257 .] 0.98

  Alignments for each domain:
  == domain 1  score: 302.2 bits;  conditional E-value: 7.7e-94
  Pantoate_transf   2 vtvkdlrkmkeegekiamlTaydattAklvdeagvdviLVGDslgmvvlgyestlpvtleemiyhtkaVargakralvvadlPfgsyeaskeqa 95 
                      +t + +r++k++gekia+lT  d++tAk+vdeag+ ++LVGDslgmvvlgye+t++v+l++m++h++aVar++ +alvvad+P+g   ++++qa
       CCG91894.1   6 ITPDWIRHRKNSGEKIAALTVVDYPTAKIVDEAGLPLLLVGDSLGMVVLGYENTTKVSLDDMLHHVRAVARAKVKALVVADMPYGWN-RNPNQA 98 
                      6677899*****************************************************************99***********98.9***** PP

  Pantoate_transf  96 lenAarllkeggadavKleggaevaetvkalveagipVmgHiGltPqsvnalggykvqgkteeeaeklledakaleeaGafalvlEavpaelak 189
                      l  A++l+ + ga+avK+egg+e+a tv+ l ++gi VmgHiGl+Pq   ++  y+ qg  eee++k+++da+ l++aG+f++vlEav+ +la+
       CCG91894.1  99 LYCAQKLCDA-GAEAVKVEGGTEIAATVELLLAKGIQVMGHIGLMPQFLGETPRYRKQGLREEEKKKIIDDALFLSKAGVFSIVLEAVEDQLAE 191
                      *********9.*********************************************************************************** PP

  Pantoate_transf 190 eiteklsiptIGIGAGaacdGqvlvlhDllgltekfkpkfvkkyaelaesieeavkaYaeevkeg 254
                      eit+++++ptIGIG+G+ cdGq+ v+hDl+gl+  f+pkfv+  ++la  i+ea++aY++ev+e 
       CCG91894.1 192 EITKRVEVPTIGIGSGKFCDGQIRVFHDLMGLFPWFRPKFVQPKLNLALLIKEAATAYKKEVQEA 256
                      **************************************************************985 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.1   3.4e-13   1.2e-09       3     107 ..      13     118 ..      11     135 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 3.4e-13
  PEP_mutase   3 aLhakgeplvlpnawDalsakiveeagfkalatsSlavaaslGvpDgeelpleellaavraiaevv.slPlivDledGygespeevaetvrrliaaGvv 100
                 + +++ge + ++ + D  +akiv eag + l ++      +lG++ + +++l+ +l++vra+a++  +  + +D+  G+ ++p++  +  ++l++aG+ 
  CCG91894.1  13 HRKNSGEKIAALTVVDYPTAKIVDEAGLPLLLVGDSLGMVVLGYENTTKVSLDDMLHHVRAVARAKvKALVVADMPYGWNRNPNQALYCAQKLCDAGAE 111
                 5577789999************************999999***********************98538888**************************** PP

  PEP_mutase 101 gvniEDk 107
                 +v +E  
  CCG91894.1 112 AVKVEGG 118
                 ***9976 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0    0.0083        30     114     174 ..      47     117 ..      11     132 .. 0.74
   2 ?    7.0   0.0   0.00084         3       9      49 ..     173     215 ..     167     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0083
                 SEEE-TTTTSSTTS-.SS--.HHHHHHHHHTT--..EEEE...S---SHHH....HHHHHTT--SEEEE-H CS
        NanE 114 divGttlsGytkeeekaepD.falvkalseaglk..viae...GrintPek....akkaieiGvdavvvGs 174
                 d +G  + Gy ++++ + +D ++ v+a+  a++k  v+a+   G    P++    a+k ++ G++av v +
  CCG91894.1  47 DSLGMVVLGYENTTKVSLDDmLHHVRAVARAKVKalVVADmpyGWNRNPNQalycAQKLCDAGAEAVKVEG 117
                 45677888998888875555267899999999986666653336667888733334788899999998854 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00084
                 HHHT-SEEEEESHHH..HHHHHTT--S-EEEE-B---TTS--- CS
        NanE   9 eqaGavgiriegved..ikaikavvdlPiiGivkrdlpdsevr 49 
                 ++aG  +i  e+ved   ++i + v++P iGi    + d ++r
  CCG91894.1 173 SKAGVFSIVLEAVEDqlAEEITKRVEVPTIGIGSGKFCDGQIR 215
                 68999********9954478************77777776666 PP

>> DUF429  Protein of unknown function (DUF429)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.1e-05      0.15      21      60 ..      60      95 ..      44     137 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.1e-05
      DUF429 21 lrlvdveaeeivaalaallaaaeeaavvaiDaPiglpere 60
                 ++   + ++++ +++a+ a+a+ +a+v  D+P g++ ++
  CCG91894.1 60 TKV---SLDDMLHHVRAV-ARAKVKALVVADMPYGWNRNP 95
                333...44699999**99.8889*************9633 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.7e-05       0.2      12      97 ..      51     134 ..      41     139 .. 0.90
   2 ?   -1.9   0.0      0.52   1.9e+03     140     170 ..     156     186 ..     152     205 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.7e-05
                   EEEEECTTCSTCEEEETTSHHHHHHHHHHHT-SEEEEEEHH.HHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-S CS
  His_biosynth  12 kvVrlvkGdrfqelryagdpvelakryeeegadelhvvDld.aakegreanldlveeiaeevfipvqvGGGIrsledveelleagad 97 
                    vV    G ++++++  +d++  +++ ++++++ l+v+D+  + +++ ++ l + ++++++    v v GG     +ve ll  g++
    CCG91894.1  51 MVV---LGYENTTKVSLDDMLHHVRAVARAKVKALVVADMPyGWNRNPNQALYCAQKLCDAGAEAVKVEGGTEIAATVELLLAKGIQ 134
                   556...8999999***************************637778888888999***************************99986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.52
                   TTTEEEEEEHHHHHHHHHHTT-SEEEEEETT CS
  His_biosynth 140 gwreetgldavelakkleelgageilltdid 170
                   g ree++ ++++ a  l+++g+ +i+l  ++
    CCG91894.1 156 GLREEEKKKIIDDALFLSKAGVFSIVLEAVE 186
                   6677777777888888888888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1994.54
//
Query:       CCG91895.1  [L=167]
Description: 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-31  109.2   0.0    1.9e-31  108.9   0.0    1.1  1  HPPK      7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
  ------ inclusion threshold ------
      0.028   14.8   0.0       0.05   14.0   0.0    1.4  1  SOCS      Suppressor of cytokine signalling


Domain annotation for each model (and alignments):
>> HPPK  7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   2.1e-35   1.9e-31       2     112 .]       5     136 ..       4     136 .. 0.91

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 2.1e-35
                 EEEEE-SSSHHHHHHHHHHHHHH....EEEEE---EEE--S....SS-GEEEEEEEEEESS-HHHHHHHHHHHHHHTT--....C.STS-BS-EEEEEE CS
        HPPK   2 lalGsNlgdreanleealealee....kvvkvSslyetepv....dqpdFlNavvevetelspeellealkeiEkelgre....r.rwgpRtlDlDill 87 
                 +++G+N+g+re++++eal+ l++    + + +Ss++etepv     +p FlN+vve++t+ls ++ll++l++ E + gr     r ++gpR++DlDil+
  CCG91895.1   5 IGVGTNQGKREEQIREALAFLKRltegEHFLCSSIWETEPVdcpiGSPPFLNCVVEIDTSLSSRSLLQRLQDFEISQGRLplseReKNGPRPIDLDILY 103
                 89****************99977666667899*********66655899******************************76654346************ PP

                 ET........EEES-TTGGG-HHHHHHHHHHCT CS
        HPPK  88 yg........ltlPhprlaeraFvlvplaelap 112
                 yg        l +Phpr+ +r+Fvl plae+ p
  CCG91895.1 104 YGsniivepdLLIPHPRICQRRFVLGPLAEIRP 136
                 ******************************986 PP

>> SOCS  Suppressor of cytokine signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.6e-06      0.05      24      45 ..      59      76 ..      35      77 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.6e-06
        SOCS 24 aeldvscrkslsrRSLRQklqD 45
                +e+d+    sls+RSL Q+lqD
  CCG91895.1 59 VEIDT----SLSSRSLLQRLQD 76
                44444....5***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1098.20
//
Query:       CCG91896.1  [L=322]
Description: SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-24   85.3   0.0    5.6e-24   84.8   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    1.3e-09   38.5   0.0    2.9e-09   37.5   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    2.5e-08   33.8   0.0    0.00035   20.4   0.0    2.2  2  Methyltransf_31  Methyltransferase domain
    1.5e-06   28.8   0.1    7.3e-06   26.6   0.0    2.1  3  Methyltransf_12  Methyltransferase domain
      1e-05   26.1   0.0    4.6e-05   24.0   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    0.00054   19.0   0.3     0.0072   15.3   0.3    2.1  1  Methyltransf_9   Protein of unknown function (DUF1698)
     0.0031   17.1   0.0      0.018   14.6   0.0    2.2  2  MetW             Methionine biosynthesis protein MetW
  ------ inclusion threshold ------
      0.069   12.4   0.0       0.83    8.9   0.0    2.1  2  CMAS             Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   2.5e-27   5.6e-24      20     163 ..     118     258 ..      87     260 .. 0.86

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 2.5e-27
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkpg 112
                       ++ +++Ld+GcG   +l  l  +gf +++g D++ +  ei  ++   +k+  ++q     + +fdlIvl++v+eh++ p  +l++++++lk++
       CCG91896.1 118 INQHSKILDYGCGRAQFLLRLYSWGFeKLYGLDPYWQGPEIE-TKEMVIKKGDYSQL---RDHQFDLIVLNHVIEHLEKPLVVLKTLRDHLKEN 207
                      467889********************99******97777764.44444444442221...4459****************************** PP

  Methyltransf_23 113 Gylllseplaslk.edrllldwlylvpagrhisffsarslkelleeaGlevv 163
                      G++l+ +pl++++ +++    w++++p  rh++ fs +s++ ++++ Gl+v 
       CCG91896.1 208 GVILVNTPLVDSYgWRKFGNAWAMWDPP-RHLHIFSVKSMALAAKKCGLKVE 258
                      ***********99677777789******.********************985 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.3e-12   2.9e-09       1      95 [.     125     211 ..     125     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.3e-12
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGl 93 
                      Ld GcG+ +++  l + g ++++g+D+  +       ++++++  + + ++d ++  ++d++fDl+v+++v++h+e+p  +lk ++  Lk +G+
       CCG91896.1 125 LDYGCGRAQFLLRLYSWGfEKLYGLDPYWQGP-----EIETKE--MVIKKGDYSQ--LRDHQFDLIVLNHVIEHLEKPLVVLKTLRDHLKENGV 209
                      89************************877766.....455555..5578899998..9***********************************9 PP

                      EE CS
  Methyltransf_11  94 lv 95 
                      ++
       CCG91896.1 210 IL 211
                      87 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   8.7e-05      0.19       2      35 ..     119     150 ..     118     151 .. 0.77
   2 !   20.4   0.0   1.6e-07   0.00035      59     113 ..     166     216 ..     157     269 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.7e-05
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiD 35 
                      +++ ++lD+GCG  +++++l++  g+  +++G+D
       CCG91896.1 119 NQHSKILDYGCGRAQFLLRLYS-WGF-EKLYGLD 150
                      67889****************5.333.3456665 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.6e-07
  Methyltransf_31  59 eqgdieeleklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                      ++gd  +l     d +fDli+ n v+ +l  p  +l+ + + lk++g++l+++p 
       CCG91896.1 166 KKGDYSQLR----DHQFDLIVLNHVIEHLEKPLVVLKTLRDHLKENGVILVNTPL 216
                      455555555....789***********************************9985 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.7   6.2e+03      13      33 ..       3      23 ..       1      30 [. 0.79
   2 ?   -2.2   0.0       3.1     7e+03       1      14 [.     125     138 ..     125     151 .. 0.76
   3 !   26.6   0.0   3.3e-09   7.3e-06      64      99 .]     171     210 ..     153     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.7
  Methyltransf_12 13 alleklpdieytgvDispsai 33
                     ++l+++++++++g++ s  + 
       CCG91896.1  3 MILPDISTCRICGCEASHPVY 23
                     78999999*****99997665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.1
  Methyltransf_12   1 LeiGcGtGsllral 14 
                      L+ GcG +++l +l
       CCG91896.1 125 LDYGCGRAQFLLRL 138
                      799***99888665 PP

  == domain 3  score: 26.6 bits;  conditional E-value: 3.3e-09
  Methyltransf_12  64 g....ssfDlvvasnvlhhlkdirevldnirklLkpgGrl 99 
                      +    ++fDl+v+++v++hl+++  vl+ +r++Lk +G++
       CCG91896.1 171 SqlrdHQFDLIVLNHVIEHLEKPLVVLKTLRDHLKENGVI 210
                      033347********************************86 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.1e-08   4.6e-05       1      97 []     124     208 ..     124     208 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.1e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      +Ld GcG+ +++l+l    g +k++g+D+  +  e+  +++        + +gd ++l   d++fDl+v++++++hl+++    +lk ++++Lk
       CCG91896.1 124 ILDYGCGRAQFLLRLYSW-GFEKLYGLDPYWQGPEIETKEM-------VIKKGDYSQLR--DHQFDLIVLNHVIEHLEKPL--VVLKTLRDHLK 205
                      8***************99.69********999999866666.......68999999997..789******877***99654..68********* PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      ++G
       CCG91896.1 206 ENG 208
                      998 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3   3.2e-06    0.0072     115     223 ..     120     218 ..     109     225 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.2e-06
                     TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T---EEEEEEES-GGG-S-HHHHHHHHHCTE CS
  Methyltransf_9 115 kgrtildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahllplgieqlpeleafdtvfsmGvlyhrrsPldhllqlkdql 209
                     +  +ild Gcg   +l r+ + g +   G+dP ++     e+ ++++ ++           ql + + fd + +  v+ h + Pl  l  l+d+l
      CCG91896.1 120 QHSKILDYGCGRAQFLLRLYSWGFEKLYGLDPYWQGP-EIET-KEMVIKKGDY-------SQL-RDHQFDLIVLNHVIEHLEKPLVVLKTLRDHL 204
                     56789***************************87643.2332.2333222222.......334.3578*************************** PP

                     EEEEEEEEEEE-BS CS
  Methyltransf_9 210 vkgGelvletlvie 223
                     +++G ++++t  ++
      CCG91896.1 205 KENGVILVNTPLVD 218
                     *******9998876 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   8.2e-06     0.018      11      98 ..     118     200 ..     112     215 .. 0.85
   2 ?   -1.8   0.0       0.9     2e+03     142     171 ..     237     266 ..     228     285 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.2e-06
        MetW  11 ikpgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldel 98 
                 i+++s++ld GcG  ++l  l      + +Gl+   +g  e  +k + + +gd     ++ +d++fd++vl+  +  + +p  vl+ l
  CCG91896.1 118 INQHSKILDYGCGRAQFLLRLYSWGFEKLYGLDPYWQG-PEIETKEMVIKKGDY----SQLRDHQFDLIVLNHVIEHLEKPLVVLKTL 200
                 7899***********99988888777788999999888.466778888887765....567899********************9864 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.9
        MetW 142 nihlltikdfvelceelnlkvedrvaldek 171
                  +h+ ++k +   +++ +lkve+ ++ + k
  CCG91896.1 237 HLHIFSVKSMALAAKKCGLKVEKVTYDSGK 266
                 589999999988899999999987654443 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.085   1.9e+02      55      75 ..     113     133 ..     110     140 .. 0.84
   2 ?    8.9   0.0   0.00037      0.83     113     167 ..     162     215 ..     155     271 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.085
                 HTTTT--TT-EEEEES-TTSH CS
        CMAS  55 leklelkpGmtlLdiGcGWGs 75 
                 ++ l++++ +++Ld GcG  +
  CCG91896.1 113 FKELGINQHSKILDYGCGRAQ 133
                 678999************665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00037
                 -EEEEES-GGG---.--SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEEEEE CS
        CMAS 113 kvevklldyedlde.kvdrvvsvgafehvgkenydtffkklkkllkedGllllhti 167
                 +  +k  dy +l++ ++d +v   ++eh+ k       k+l + lke+G++l++t 
  CCG91896.1 162 EMVIKKGDYSQLRDhQFDLIVLNHVIEHLEKP--LVVLKTLRDHLKENGVILVNTP 215
                 4568999*****999*************9765..56799************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2291.80
//
Query:       CCG91897.1  [L=172]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-23   82.0   0.0    9.7e-23   81.3   0.0    1.3  1  DUF3455   Protein of unknown function (DUF3455)
  ------ inclusion threshold ------
      0.081   13.3   0.0       0.16   12.4   0.0    1.5  1  FERM_C    FERM C-terminal PH-like domain


Domain annotation for each model (and alignments):
>> DUF3455  Protein of unknown function (DUF3455)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   1.1e-26   9.7e-23       1     157 [.      29     165 ..      29     166 .. 0.93

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 1.1e-26
     DUF3455   1 pagnklalvalgrGtqnYtCaa..saagaaeptavgavAtLfdatclaaklpdlleslpslvaelklvgkhfftdgtgPtfdldldgskvtgkkvasva 97 
                 p++  ++lva ++G+q+Y+ ++  ++++++e+++++++A Lfd+   ++k+                +gkh+     gP+++l+ dgsk+t++      
  CCG91897.1  29 PSHTMIVLVAEAKGVQIYSSQPqiGEKNSFEWKLTAPKALLFDK---SGKQ----------------IGKHYS----GPSWELN-DGSKITAMLPP--I 101
                 67778999************9999999*****************...8999................*****5....9******.**********9..8 PP

     DUF3455  98 Apkdaagavawllltakes...gtlsgvtevyRveTaGGsapa.tCekagekfeveYaAeYvFy 157
                 A  d+++a++wlll+ k++   g ls+v++v Rv+T GG +p+ + +k+++ ++++Y A+Y+F 
  CCG91897.1 102 AKVDQQTAIPWLLLKVKSHegkGLLSNVQYVIRVATLGGLPPKkAPSKENQCSKISYRATYLFL 165
                 888888*********9999999*********************7788889************96 PP

>> FERM_C  FERM C-terminal PH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.8e-05      0.16       5      34 ..      32      61 ..      29      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.8e-05
                -EEEEEE-SSEEEEEBTTBSSS-SEEEEGG CS
      FERM_C  5 teliLgisakGilvyekqnkitpklafpWr 34
                t ++L  +akG+++y+ q +i  k++f+W+
  CCG91897.1 32 TMIVLVAEAKGVQIYSSQPQIGEKNSFEWK 61
                56788999*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1310.10
//
Query:       CCG91898.1  [L=259]
Description: Polysaccharide deacetylase family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-34  116.7   0.0    8.5e-34  116.1   0.0    1.3  1  Polysacc_deac_1  Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.0   4.7e-38   8.5e-34       6     114 ..      64     173 ..      59     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 4.7e-38
                      STEEEEEEEESS.CSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHHHS--- CS
  Polysacc_deac_1   6 kksvalTfDdgp.rdntteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhsnlkrlseeevrreierakdalrkalgrep 98 
                      ++ +a+TfDdgp + +t+ +l +L+  k++atff++g++v+ yp+++re++a+G+eignHt+nh++l++ls ++v+++i  ++d + +a+g +p
       CCG91898.1  64 GRRIAITFDDGPvPHTTEMVLRALESRKIPATFFMLGEHVKVYPSLAREVQAAGHEIGNHTFNHPQLSKLSDAQVEDQIRLTQDLIVDATGTRP 157
                      689*********77777789************************************************************************** PP

                      -EEE-GGGEE-HHHHH CS
  Polysacc_deac_1  99 rlfryPygsasatvle 114
                      +++r+Pygs+ +    
       CCG91898.1 158 VWLRPPYGSFRRSQAH 173
                      *********8766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1741.38
//
Query:       CCG91899.1  [L=374]
Description: Citrate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.3e-120  402.0   0.0   2.6e-120  401.8   0.0    1.0  1  Citrate_synt  Citrate synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  401.8   0.0  1.5e-124  2.6e-120       1     360 [.       8     355 ..       8     356 .. 0.94

  Alignments for each domain:
  == domain 1  score: 401.8 bits;  conditional E-value: 1.5e-124
                   GGTTEEEEEESSEEEETTTTE.EEETTEEHHHHHHHHS-HHHHHHHHHHSS---HHHHHHHHHHHHCTTS--HHHHHHHHCSSTTS-HHHHHHHHHH CS
  Citrate_synt   1 glrgvaaleteisevdgekge.lrYRGydieeLaeekssfeevaylLltgelPtkeelkefkeelaearklpekvlealealpkdahpmavlraavs 96 
                   gl+g++a++t+is+v g++g  l+YRGy+i++La +k++feev++lLl+gelPt  +l+ef ++l++ r lp +++  l+ +pkd++pm+vlr+++s
    CCG91899.1   8 GLEGIVAGKTSISTV-GKEGLdLTYRGYSIHDLA-KKATFEEVIFLLLHGELPTLTQLNEFIDQLMSWRSLPPELQTVLKLIPKDCNPMDVLRTGCS 102
                   899************.566556************.8************************************************************* PP

                   HHHHHSTTCTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS.-----..TTSSHHHHHHHHHHSS---HHHHHHHHHHHHHHS--SSSHHHHHH CS
  Citrate_synt  97 alsaddeeseakeeseeaalrdalkliAklptiaaaiyrarlgreplepd..dklsyaenflymlrgkkpdeeeaklldlalvlhaDHelnaSTfaa 191
                   +l++ ++e   k++    +l  a +l+A +p++++ +y+++ g+ ++e++  +++++a+++l++l g+ ++++++++ld+al+lha+He+naSTf++
    CCG91899.1 103 MLGTLEPE---KSS--SLQLTIAKRLLAIMPSMLLFWYQYHMGKGSIETSseSEKTIAAHILHLLYGHPASPSQIRALDVALILHAEHEFNASTFTC 194
                   *****973...222..223444568******************99995333699************977888************************* PP

                   HHHHTTT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG.GHHHHHHHHHHTTTS--TTBC-SSSSS--HHHHHHHHHHHHHHTCHTHHHHH CS
  Citrate_synt 192 rvvaStladlysaiaagigalkGplhgganeavlkmleeigsaeveveeylekvlakekerlpGfGHrvykksDpRakilkelaeelaeekgkdpll 288
                   rv++Stl+d ysai++gi+al Gplhgga ea+++ + +++sa+ e+e  ++++l k ke+++GfGHrvyk +DpR  i+ke+a++l++e +k++l+
    CCG91899.1 195 RVITSTLSDFYSAITGGICALRGPLHGGADEAAMEQIIQFKSAD-EAEVGIKSMLTK-KEKIMGFGHRVYKYGDPRSDIIKEWAKKLSDEPSKKNLF 289
                   ****************************************9999.***********8.6*******************************99999** PP

                   HHHHHHHHHHHHHHHCHHGCT-EB-THHHHHHHHHHTT--GGGHHHHHHHHHHHHHHHHHHHHHHT------ CS
  Citrate_synt 289 klaeeleevapevlkekeeknlypNvDfysgvlyralgipeelftvlfaisRvaGwlAhileqladnkiiRP 360
                   ++ae++eev+ +     e k+lypNvDfys+++y+ lgip+ lft+lf+isR+ Gw+Ahi+eq+a+n++iRP
    CCG91899.1 290 AIAERIEEVMFR-----E-KHLYPNVDFYSALTYHFLGIPTFLFTPLFVISRTSGWCAHIFEQRANNRLIRP 355
                   ************.....7.99**************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2401.61
//
Query:       CCG91900.1  [L=79]
Description: hypothetical protein MFUM_260031 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.46
# Mc/sec: 519.02
//
Query:       CCG91901.1  [L=648]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0044   17.4   0.0       0.09   13.2   0.0    2.5  2  AAA_16    AAA ATPase domain


Domain annotation for each model (and alignments):
>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     5e-06      0.09      26     132 ..      60     166 ..      37     319 .. 0.54
   2 ?   -3.0   0.0      0.45   8.1e+03      74      87 ..     561     572 ..     525     619 .. 0.45

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5e-06
      AAA_16  26 lvllsGesGvGKsslvrellralekd......ggiflrgkcdqlesaipysalaqalareellrqllde.......aesaeleawrekleeala..... 106
                 +vl s  sGvGKs lv +l+++++ +        +f    + q+        l q++ +e l+ +           a         ++     a     
  CCG91901.1  60 IVLYSTTSGVGKSHLVGRLFQYFSPNfflisiPPLFSPSGFFQY--------LRQCIYNELLFPEKSGStgcwpgqA--------NQRDVL--Aygill 140
                 44445679*************99999666665566666666666........7777766555554444433332221........222222..233333 PP

      AAA_16 107 .........avpelagaeasrllellkrllallsr 132
                                    ++l++++++++++l++
  CCG91901.1 141 elvneaaqkN---------KSLYRKIRSAIVFLKK 166
                 2222333330.........4444444444444443 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.45
      AAA_16  74 qalareellrqlld 87 
                 + + +  l r l +
  CCG91901.1 561 EKI-E-ALARYLIS 572
                 222.1.22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4363.63
//
Query:       CCG91902.1  [L=845]
Description: TPR repeats containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-23   80.7  19.0    9.4e-05   23.0   0.0   11.5 12  TPR_16    Tetratricopeptide repeat
    1.5e-20   71.6  42.8      0.011   15.8   0.8   14.8 15  TPR_2     Tetratricopeptide repeat
    4.6e-20   70.9  36.5       0.26   12.0   0.0   16.1 16  TPR_6     Tetratricopeptide repeat
    3.7e-18   65.8  19.9       0.12   12.9   0.2    9.6  9  TPR_19    Tetratricopeptide repeat
    6.2e-17   60.6  25.1      0.084   12.7   0.1   12.2 13  TPR_1     Tetratricopeptide repeat
    2.6e-15   55.8  18.3        0.2   12.6   0.0   12.4 13  TPR_14    Tetratricopeptide repeat
    1.4e-14   54.1  22.6      0.098   13.0   0.5   10.8 11  TPR_12    Tetratricopeptide repeat
    1.1e-13   50.2  30.8      0.057   13.6   0.1   12.2 12  TPR_8     Tetratricopeptide repeat
    7.1e-12   44.5  11.9       0.31   11.2   0.0   10.1 11  TPR_7     Tetratricopeptide repeat
    8.5e-12   45.1  31.6       0.27   11.5   0.1    9.1 10  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
      2e-10   40.7  19.2    0.00074   19.3   0.3    6.9  6  TPR_21    Tetratricopeptide repeat-like domain
    9.7e-08   31.6   5.2          3    7.8   0.0    8.6  9  TPR_10    Tetratricopeptide repeat
    2.4e-06   27.1  11.4      0.025   14.3   0.6    7.4  7  TPR_11    TPR repeat
    0.00016   21.5  23.4      0.012   15.3   0.7    6.5  6  YfiO      Outer membrane lipoprotein
     0.0079   15.7   0.2       0.73    9.3   0.1    2.5  2  MTBP_N    MDM2-binding
  ------ inclusion threshold ------
      0.057   13.8   6.2       0.78   10.1   0.1    5.1  5  TPR_20    Tetratricopeptide repeat
      0.083   13.3   7.2         96    3.7   0.0    7.3  7  TPR_17    Tetratricopeptide repeat
        2.8    7.6   8.9        7.5    6.2   0.1    3.9  4  DUF2225   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       4.3   4.3e+03      31      41 ..      70      80 ..      57      83 .. 0.74
   2 !   11.2   0.0   0.00044      0.44       4      53 ..     110     159 ..     109     173 .. 0.92
   3 !   11.0   0.0   0.00051      0.51       4      64 ..     183     242 ..     182     247 .. 0.91
   4 ?   -2.0   0.0       6.2   6.2e+03      38      59 ..     254     275 ..     253     279 .. 0.78
   5 ?    6.3   0.2     0.015        15       4      62 ..     331     389 ..     330     394 .. 0.85
   6 ?    3.9   0.2     0.084        84       3      46 ..     403     446 ..     401     454 .. 0.83
   7 ?    3.8   0.0      0.09        90      14      61 ..     449     496 ..     436     500 .. 0.83
   8 ?    6.3   0.0     0.016        16       1      39 [.     510     548 ..     510     551 .. 0.95
   9 !    9.8   0.2    0.0013       1.3      15      67 ..     563     615 ..     561     616 .. 0.87
  10 ?    3.0   0.0      0.17   1.7e+02      19      65 ..     604     650 ..     597     650 .. 0.87
  11 !   23.0   0.0   9.4e-08   9.4e-05       1      45 [.     657     701 ..     657     703 .. 0.96
  12 ?    5.9   0.1     0.021        21       9      59 ..     707     758 ..     701     765 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4.3
      TPR_16 31 PdaaeAllllg 41
                  +aeAl++l+
  CCG91902.1 70 LKHAEALYFLA 80
                45899999988 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00044
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53 
                 a a+++ g++++A++ +e+a k+  ++ +    +  +g ++++ g  +eA
  CCG91902.1 110 AEAYRAMGKWTEAIREYETAEKYLLDTALLEKVWIRKGFSLWQDGKTKEA 159
                 899*********************99999999999999999999999998 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00051
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 +++al +g+  +A ++++ ++++ p s    eA ++ g ++ +q+  +eA+ ++++ +++a
  CCG91902.1 183 GKIALSNGNQNEAKEYFHSVIAKSPNSESGIEAKYWTGKLL-EQNHPQEAVPYFQSVVDQA 242
                 788999***********************************.555*********9999877 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 6.2
      TPR_16  38 lllgdaalrqgrlaeAaalyra 59 
                 l+lg  +l++ +  +A +++++
  CCG91902.1 254 LELGKTYLALEETGKAMQAFEK 275
                 5788888888888888887775 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.015
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 a + +++ +yd A+ +le +l++++    + +  + lg+++++ g  ++A  ++ +al+
  CCG91902.1 331 AEEEAKNEQYDFALLLLEKLLDSQSLLGTDKQVEYSLGRIYYEMGSKEPATKYFYKALA 389
                 66778999****************55555*********************977777764 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.084
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalr 46 
                 l+++ ++  +++d a  + +a  ++++  + a    ll +a+ +
  CCG91902.1 403 LGLIDYDKSKFEDSADKFAQAFQKQGELEEEALYNVLLSRARMH 446
                 577789999*********99999999998877777777777665 PP

  == domain 7  score: 3.8 bits;  conditional E-value: 0.09
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 dd ++a ea+l ++p s+++ e +l  ++++ +++ ++ A+  +++al
  CCG91902.1 449 DDFLKAKEAFLLKYPTSSFRLEIYLTEANLWEELNQFDNAIGILEKAL 496
                 5556666899*******************************7777776 PP

  == domain 8  score: 6.3 bits;  conditional E-value: 0.016
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAlll 39 
                 l+l++++l++ +y++A + + ++ +++p + + +eAl+l
  CCG91902.1 510 LNLGKLFLKQAKYAEATEEFMRLCDDYPTDKFVPEALYL 548
                 689*********************************997 PP

  == domain 9  score: 9.8 bits;  conditional E-value: 0.0013
      TPR_16  15 dAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 +A++   + l+++ps+P a+ Al+  ++ a+   ++ +A+ l+++  + +p++
  CCG91902.1 563 AAREKMIEILRKYPSDPIAPKALFSAAEYAYDEADFYGARWLFEEVPKDYPNS 615
                 678888899************************99999998888877777765 PP

  == domain 10  score: 3.0 bits;  conditional E-value: 0.17
      TPR_16  19 aleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 ++e++ k++p s +  +A+++   aa + ++l +A+ l+++  +++p
  CCG91902.1 604 LFEEVPKDYPNSELGDQAYYWASKAAIECKDLSGAVLLLEKIPENSP 650
                 57777789999999**********************99998877766 PP

  == domain 11  score: 23.0 bits;  conditional E-value: 9.4e-08
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaal 45 
                 l ++++++++ +y++A+ +++ +l++ p   +++ All ++d+++
  CCG91902.1 657 LLQGKIYFDQSQYPAAVSLFDGVLDKEPTGKLHVIALLRKADCFF 701
                 579****************************************98 PP

  == domain 12  score: 5.9 bits;  conditional E-value: 0.021
      TPR_16   9 ragdyddAaaaleaalkrdpssPd....aaeAllllgdaalrqgrlaeAaalyra 59 
                 + + y++A  ++  ++k+    ++      eA++  ++++ +qgr ++A+a ++ 
  CCG91902.1 707 EKKYYQEASSLYSNVIKDP---SAdieeKDEAAFKFAVCLQKQGRIEDALASFLD 758
                 5555899999999999999...444778999999999999999****99976654 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.8   1.1e-05     0.011       3      29 ..     105     131 ..     103     133 .. 0.90
   2 ?    5.7   0.0     0.019        19       2      28 ..     141     167 ..     140     168 .. 0.89
   3 !   10.4   0.0   0.00057      0.56       1      33 [.     176     208 ..     176     209 .. 0.90
   4 ?    1.8   0.0      0.33   3.2e+02      11      27 ..     222     238 ..     214     242 .. 0.83
   5 !   11.2   0.1   0.00032      0.32       5      32 ..     254     281 ..     251     283 .. 0.91
   6 ?   -1.0   0.4       2.7   2.7e+03      12      28 ..     335     351 ..     327     353 .. 0.84
   7 ?    6.2   0.0     0.013        13       5      29 ..     365     389 ..     363     392 .. 0.92
   8 !    7.2   0.2    0.0063       6.3       3      29 ..     399     425 ..     398     430 .. 0.92
   9 !    7.3   0.1    0.0056       5.6       2      28 ..     470     496 ..     469     497 .. 0.93
  10 !   10.2   0.1   0.00068      0.67       1      34 []     506     539 ..     506     539 .. 0.91
  11 ?   -1.0   0.2       2.7   2.7e+03       3      26 ..     621     644 ..     620     645 .. 0.89
  12 ?    5.3   0.0     0.025        25       3      33 ..     655     685 ..     653     685 .. 0.86
  13 ?    0.4   0.2      0.93   9.3e+02       9      27 ..     703     721 ..     702     723 .. 0.65
  14 !    7.0   0.0    0.0073       7.3       3      28 ..     735     760 ..     733     761 .. 0.84
  15 ?   -1.4   0.0       3.6   3.6e+03       9      27 ..     799     817 ..     796     820 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.1e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                 + +++++ay+++g++ eA++ +e A +
  CCG91902.1 105 IAFWRAEAYRAMGKWTEAIREYETAEK 131
                 5699*******************9965 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.019
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 +++ + G ++++ g+ +eA e   k+l
  CCG91902.1 141 KVWIRKGFSLWQDGKTKEAQETISKVL 167
                 68*****************99877765 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00057
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 aeal   G++++ +g+ +eA+e+f  +++  Pn
  CCG91902.1 176 AEALLIFGKIALSNGNQNEAKEYFHSVIAKSPN 208
                 577777799*********************998 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.33
       TPR_2  11 yyklgdyeeAleafekA 27 
                 ++++++++eA+ +f+ +
  CCG91902.1 222 LLEQNHPQEAVPYFQSV 238
                 5679**********965 PP

  == domain 5  score: 11.2 bits;  conditional E-value: 0.00032
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldP 32 
                  +lG+ y++l +  +A +afek l+l+ 
  CCG91902.1 254 LELGKTYLALEETGKAMQAFEKGLSLCK 281
                 579**********************986 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 2.7
       TPR_2  12 yklgdyeeAleafekAl 28 
                 +k+ +y+ Al ++ek l
  CCG91902.1 335 AKNEQYDFALLLLEKLL 351
                 78999*********998 PP

  == domain 7  score: 6.2 bits;  conditional E-value: 0.013
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 y lG++yy++g  e A ++f kAl+
  CCG91902.1 365 YSLGRIYYEMGSKEPATKYFYKALA 389
                 789*****************88886 PP

  == domain 8  score: 7.2 bits;  conditional E-value: 0.0063
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                 al++lGl+ y + ++e+ ++ f +A +
  CCG91902.1 399 ALFYLGLIDYDKSKFEDSADKFAQAFQ 425
                 89**********************987 PP

  == domain 9  score: 7.3 bits;  conditional E-value: 0.0056
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 e++   ++++++l++++ A+  +ekAl
  CCG91902.1 470 EIYLTEANLWEELNQFDNAIGILEKAL 496
                 678899********************9 PP

  == domain 10  score: 10.2 bits;  conditional E-value: 0.00068
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a +l nlG++ +k+ +y+eA e f +    +P++
  CCG91902.1 506 AILLLNLGKLFLKQAKYAEATEEFMRLCDDYPTD 539
                 56899*******************9999888875 PP

  == domain 11  score: -1.0 bits;  conditional E-value: 2.7
       TPR_2   3 alynlGlayyklgdyeeAleafek 26 
                 a+y+  +a+++ +d+  A+ ++ek
  CCG91902.1 621 AYYWASKAAIECKDLSGAVLLLEK 644
                 89*************999988887 PP

  == domain 12  score: 5.3 bits;  conditional E-value: 0.025
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 a   +G++y+ + +y  A+ +f+ +l  +P+
  CCG91902.1 655 ARLLQGKIYFDQSQYPAAVSLFDGVLDKEPT 685
                 55678*****************999988885 PP

  == domain 13  score: 0.4 bits;  conditional E-value: 0.93
       TPR_2   9 layyklgdyeeAleafekA 27 
                 +a+ +++ y+eA  ++  +
  CCG91902.1 703 MAAKEKKYYQEASSLYSNV 721
                 5666777778887777655 PP

  == domain 14  score: 7.0 bits;  conditional E-value: 0.0073
       TPR_2   3 alynlGlayyklgdyeeAleafekAl 28 
                 a +  + ++ k+g+ e+Al+ f  +l
  CCG91902.1 735 AAFKFAVCLQKQGRIEDALASFLDVL 760
                 5666799*************997665 PP

  == domain 15  score: -1.4 bits;  conditional E-value: 3.6
       TPR_2   9 layyklgdyeeAleafekA 27 
                 l+ ++++d+  Al  ++k 
  CCG91902.1 799 LIKEEQKDWVGALTIYRKL 817
                 556789********99996 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.5   0.00052      0.52       4      25 ..     107     128 ..     106     132 .. 0.91
   2 ?   -1.5   0.0       5.4   5.4e+03       7      27 ..     147     167 ..     144     169 .. 0.78
   3 !   12.0   0.0   0.00026      0.26       1      33 []     177     209 ..     177     209 .. 0.93
   4 !    7.3   0.0     0.008         8       1      29 [.     214     241 ..     214     243 .. 0.91
   5 ?    4.5   0.1     0.063        62       3      25 ..     253     275 ..     252     275 .. 0.90
   6 ?    2.9   0.1       0.2     2e+02       3      25 ..     364     386 ..     362     390 .. 0.79
   7 ?   -0.9   0.1       3.4   3.4e+03       2      25 ..     399     422 ..     398     429 .. 0.70
   8 ?    2.7   0.0      0.24   2.4e+02       8      28 ..     477     497 ..     472     499 .. 0.85
   9 !   11.2   0.1   0.00047      0.47       3      32 ..     509     538 ..     508     539 .. 0.95
  10 ?   -0.7   0.0         3   2.9e+03      18      32 ..     563     577 ..     544     578 .. 0.70
  11 ?    4.3   0.2     0.075        74       2      33 .]     584     615 ..     583     615 .. 0.84
  12 ?    1.8   0.0      0.48   4.8e+02       1      31 [.     620     650 ..     620     650 .. 0.91
  13 !    9.3   0.0    0.0019       1.9       1      31 [.     654     684 ..     654     685 .. 0.95
  14 ?    2.7   0.1      0.25   2.5e+02       2      26 ..     692     721 ..     691     725 .. 0.63
  15 ?    6.3   0.0     0.018        17       1      27 [.     734     760 ..     734     762 .. 0.89
  16 ?    4.0   0.0     0.096        95       6      26 ..     797     817 ..     793     819 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00052
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealer 25 
                 +++a++yr++g++++A++ +e 
  CCG91902.1 107 FWRAEAYRAMGKWTEAIREYET 128
                 89****************9986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 5.4
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealerli 27 
                 + s+ + g+t +A e+  +++
  CCG91902.1 147 GFSLWQDGKTKEAQETISKVL 167
                 56777757*******988886 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00026
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlikeYPdS 33 
                 +Al+  ++  ++ g+  +A+e++ ++i + P+S
  CCG91902.1 177 EALLIFGKIALSNGNQNEAKEYFHSVIAKSPNS 209
                 68999999999988******************9 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.008
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlike 29 
                 +A y+ ++++++   +++A+ ++++++++
  CCG91902.1 214 EAKYWTGKLLEQN-HPQEAVPYFQSVVDQ 241
                 688*****99977.************986 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.063
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealer 25 
                 ++ l++ y++l +t kA++a+e+
  CCG91902.1 253 FLELGKTYLALEETGKAMQAFEK 275
                 5889******88999******97 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealer 25 
                  y l++ y+++g ++ A +++ +
  CCG91902.1 364 EYSLGRIYYEMGSKEPATKYFYK 386
                 5889******9999988887755 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 3.4
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealer 25 
                 Al++l+l  +   + +++ + + +
  CCG91902.1 399 ALFYLGLIDYDKSKFEDSADKFAQ 422
                 999999988875566666555544 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   8 lsyrklgdtdkAlealerlik 28 
                  + ++l++ d+A+ +le+ ++
  CCG91902.1 477 NLWEELNQFDNAIGILEKALS 497
                 5677899**********9876 PP

  == domain 9  score: 11.2 bits;  conditional E-value: 0.00047
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYPd 32 
                 l++l+++++k+ ++++A e + rl ++YP+
  CCG91902.1 509 LLNLGKLFLKQAKYAEATEEFMRLCDDYPT 538
                 89********88*****************6 PP

  == domain 10  score: -0.7 bits;  conditional E-value: 3
                 HHHHHHHHHHHH-TT CS
       TPR_6  18 kAlealerlikeYPd 32 
                 +A+e + +++++YP 
  CCG91902.1 563 AAREKMIEILRKYPS 577
                 688888899999995 PP

  == domain 11  score: 4.3 bits;  conditional E-value: 0.075
                 HHHHHH.HHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   2 Alykla.lsyrklgdtdkAlealerlikeYPdS 33 
                 Al+ +a ++y ++ d   A+ ++e++ k+YP+S
  CCG91902.1 584 ALFSAAeYAYDEA-DFYGARWLFEEVPKDYPNS 615
                 7777776677778.9999999***********9 PP

  == domain 12  score: 1.8 bits;  conditional E-value: 0.48
                 HHHHHHHHHHHH.HHHHHHHHHHHHHHHHH-T CS
       TPR_6   1 dAlyklalsyrk.lgdtdkAlealerlikeYP 31 
                 +A+y++ ++ ++   d + A+ +le++ ++ P
  CCG91902.1 620 QAYYWASKAAIEcK-DLSGAVLLLEKIPENSP 650
                 699*********99.**********9988766 PP

  == domain 13  score: 9.3 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlikeYP 31 
                 +A +++++ y+ + ++ +A+ +++ ++++ P
  CCG91902.1 654 EARLLQGKIYFDQSQYPAAVSLFDGVLDKEP 684
                 799*********99*************9988 PP

  == domain 14  score: 2.7 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHH.....HHHHHHHHHHHHH CS
       TPR_6   2 Alyklalsyrkl.....gdtdkAlealerl 26 
                 Al++ a +++++     + +++A  ++ ++
  CCG91902.1 692 ALLRKADCFFAMaakekKYYQEASSLYSNV 721
                 89********86344433333555555555 PP

  == domain 15  score: 6.3 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerli 27 
                 +A +k a +++k+g+ ++Al+ + +++
  CCG91902.1 734 EAAFKFAVCLQKQGRIEDALASFLDVL 760
                 688999***************997776 PP

  == domain 16  score: 4.0 bits;  conditional E-value: 0.096
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerl 26 
                 +al  ++++d+  Al+++++l
  CCG91902.1 797 AALIKEEQKDWVGALTIYRKL 817
                 68999999***********98 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0084       8.4      23      52 ..     101     130 ..      71     139 .. 0.76
   2 !    7.7   0.0     0.005         5       1      58 [.     150     209 ..     150     215 .. 0.85
   3 !    9.8   0.0    0.0011       1.1       1      50 [.     222     275 ..     222     288 .. 0.85
   4 ?   -0.1   0.2       1.4   1.4e+03      31      46 ..     293     308 ..     282     310 .. 0.84
   5 ?    2.2   0.2      0.27   2.7e+02       3      44 ..     336     380 ..     334     394 .. 0.83
   6 !   12.9   0.2   0.00012      0.12       5      54 ..     483     535 ..     481     540 .. 0.88
   7 !   10.1   0.1   0.00088      0.88       4      68 .]     595     662 ..     591     662 .. 0.89
   8 !    7.7   0.0    0.0052       5.2       2      38 ..     664     703 ..     663     708 .. 0.86
   9 !   12.8   0.1   0.00013      0.13       7      53 ..     711     761 ..     706     771 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0084
      TPR_19  23 knaearllLAeallalgqldeAealLdalp 52 
                 +++ ++ + Aea+ a+g ++eA++  +++ 
  CCG91902.1 101 DSGKIAFWRAEAYRAMGKWTEAIREYETAE 130
                 567788899*************99887765 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.005
      TPR_19   1 llaegdyaeAlalleqalqedpk..naearllLAeallalgqldeAealLdalpeedpdd 58 
                 l+++g+  eA++  +++l  ++    aea+l   ++ l++g+ +eA++    + ++ p++
  CCG91902.1 150 LWQDGKTKEAQETISKVLHSKNAasCAEALLIFGKIALSNGNQNEAKEYFHSVIAKSPNS 209
                 67899***********98664443688888889***************999999888884 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0011
      TPR_19   1 llaegdyaeAlalleqalqe...dpk.naearllLAeallalgqldeAealLda 50 
                 ll+++ ++eA+++++++ ++   + + n    l L + +lal ++ +A+++ ++
  CCG91902.1 222 LLEQNHPQEAVPYFQSVVDQagfSRDiNILGFLELGKTYLALEETGKAMQAFEK 275
                 79***************988665344677777899**************99876 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1.4
      TPR_19  31 LAeallalgqldeAea 46 
                 + +a +al +l+eA++
  CCG91902.1 293 YLDAAIALSRLNEARQ 308
                 678999*******997 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.27
      TPR_19   3 aegdyaeAlalleqalqe...dpknaearllLAeallalgqldeA 44 
                 ++++y+ Al lle++l+       +  + + L ++++++g  + A
  CCG91902.1 336 KNEQYDFALLLLEKLLDSqslLGTDKQVEYSLGRIYYEMGSKEPA 380
                 5789999999****884433478899************9988777 PP

  == domain 6  score: 12.9 bits;  conditional E-value: 0.00012
      TPR_19   5 gdyaeAlalleqalqe...dpknaearllLAeallalgqldeAealLdalpee 54 
                 +++++A+ +le+al++   + + a ++l+L ++ l++  ++eA +   +l ++
  CCG91902.1 483 NQFDNAIGILEKALSDpliKKEKAILLLNLGKLFLKQAKYAEATEEFMRLCDD 535
                 699***********99998999999999***************9987776555 PP

  == domain 7  score: 10.1 bits;  conditional E-value: 0.00088
      TPR_19   4 egdyaeAlalleqalqedpk...naearllLAeallalgqldeAealLdalpeedpddaryasLlAkl 68 
                 e d+  A  l+e++ +++p+    + a ++  +a ++ ++l  A  lL+++pe  p  ++++ L++k+
  CCG91902.1 595 EADFYGARWLFEEVPKDYPNselGDQAYYWASKAAIECKDLSGAVLLLEKIPENSPIKSEARLLQGKI 662
                 556666777899999999999999999*****************************999999999986 PP

  == domain 8  score: 7.7 bits;  conditional E-value: 0.0052
      TPR_19   2 laegdyaeAlalleqalqedpk...naearllLAeallal 38 
                 +++ +y +A++l+  +l+++p    +  a+l+ A++ +a+
  CCG91902.1 664 FDQSQYPAAVSLFDGVLDKEPTgklHVIALLRKADCFFAM 703
                 6899******************977777777779999887 PP

  == domain 9  score: 12.8 bits;  conditional E-value: 0.00013
      TPR_19   7 yaeAlalleqalqe....dpknaearllLAeallalgqldeAealLdalpe 53 
                 y+eA +l+++++++      + +ea+   A +l ++g++++A a   ++++
  CCG91902.1 711 YQEASSLYSNVIKDpsadIEEKDEAAFKFAVCLQKQGRIEDALASFLDVLN 761
                 8999999999986654333337777777**************998776665 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1    0.0013       1.3       7      27 ..     109     129 ..     104     131 .. 0.90
   2 ?    3.3   0.0     0.078        78       2      28 ..     141     167 ..     140     168 .. 0.91
   3 ?    5.4   0.0     0.017        17       8      33 ..     183     208 ..     176     209 .. 0.90
   4 ?    0.6   0.0      0.56   5.6e+02      12      27 ..     223     238 ..     222     241 .. 0.84
   5 !   11.5   0.1    0.0002       0.2       5      31 ..     254     280 ..     251     282 .. 0.91
   6 ?   -3.1   0.2       8.2   8.2e+03      13      26 ..     336     349 ..     334     351 .. 0.80
   7 !   12.7   0.1   8.4e-05     0.084       4      28 ..     364     388 ..     362     389 .. 0.93
   8 ?   -1.2   0.1       2.1   2.1e+03       8      19 ..     421     432 ..     421     432 .. 0.89
   9 ?    5.0   0.1     0.023        23       4      28 ..     472     496 ..     470     497 .. 0.86
  10 !    7.0   0.2    0.0055       5.5       2      22 ..     507     527 ..     506     531 .. 0.88
  11 ?    4.8   0.0     0.027        27       3      24 ..     655     676 ..     653     685 .. 0.82
  12 ?   -2.8   0.1       6.6   6.6e+03      22      31 ..     709     718 ..     708     720 .. 0.74
  13 !    6.7   0.0     0.007       6.9       8      24 ..     740     756 ..     740     760 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0013
                 HHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekA 27 
                 ++ ay+ +gk+ eA+  ye A
  CCG91902.1 109 RAEAYRAMGKWTEAIREYETA 129
                 899************999987 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.078
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekAL 28 
                 k++ ++G  + + gk +eA e  +k+L
  CCG91902.1 141 KVWIRKGFSLWQDGKTKEAQETISKVL 167
                 68*****************99888877 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.017
                 HHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPn 33 
                 G + +++g+ +eA ey+  ++   Pn
  CCG91902.1 183 GKIALSNGNQNEAKEYFHSVIAKSPN 208
                 778899**************999998 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.56
                 HHTT-HHHHHHHHHHH CS
       TPR_1  12 fklgkydeAleyyekA 27 
                 ++++ ++eA+ y++ +
  CCG91902.1 223 LEQNHPQEAVPYFQSV 238
                 679999*******965 PP

  == domain 5  score: 11.5 bits;  conditional E-value: 0.0002
                 HHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALeln 31 
                   lG +y+ l++  +A +++ek L+l+
  CCG91902.1 254 LELGKTYLALEETGKAMQAFEKGLSLC 280
                 579*********************996 PP

  == domain 6  score: -3.1 bits;  conditional E-value: 8.2
                 HTT-HHHHHHHHHH CS
       TPR_1  13 klgkydeAleyyek 26 
                 k+++yd Al   ek
  CCG91902.1 336 KNEQYDFALLLLEK 349
                 7899*999977766 PP

  == domain 7  score: 12.7 bits;  conditional E-value: 8.4e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekAL 28 
                  y lG +y+++g  + A +y+ kAL
  CCG91902.1 364 EYSLGRIYYEMGSKEPATKYFYKAL 388
                 599*********************9 PP

  == domain 8  score: -1.2 bits;  conditional E-value: 2.1
                 HHHHHHTT-HHH CS
       TPR_1   8 Gnayfklgkyde 19 
                 ++a++k+g+++e
  CCG91902.1 421 AQAFQKQGELEE 432
                 689******997 PP

  == domain 9  score: 5.0 bits;  conditional E-value: 0.023
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekAL 28 
                 +   +n+  +l+++d A+   ekAL
  CCG91902.1 472 YLTEANLWEELNQFDNAIGILEKAL 496
                 55668999************99999 PP

  == domain 10  score: 7.0 bits;  conditional E-value: 0.0055
                 HHHHHHHHHHHHTT-HHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAle 22 
                   l nlG +++k+ ky eA e
  CCG91902.1 507 ILLLNLGKLFLKQAKYAEATE 527
                 5789***************65 PP

  == domain 11  score: 4.8 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHTT-HHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyy 24 
                 a    G +yf + +y  A+  +
  CCG91902.1 655 ARLLQGKIYFDQSQYPAAVSLF 676
                 566789************9777 PP

  == domain 12  score: -2.8 bits;  conditional E-value: 6.6
                 HHHHHHHHHS CS
       TPR_1  22 eyyekALeln 31 
                 +yy++A +l+
  CCG91902.1 709 KYYQEASSLY 718
                 7999997665 PP

  == domain 13  score: 6.7 bits;  conditional E-value: 0.007
                 HHHHHHTT-HHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyy 24 
                 +++++k+g+ ++Al+ +
  CCG91902.1 740 AVCLQKQGRIEDALASF 756
                 78************988 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.3    0.0024       2.4       7      29 ..     109     131 ..     105     149 .. 0.80
   2 ?   -1.9   0.0       8.8   8.8e+03       4      25 ..     143     164 ..     139     167 .. 0.76
   3 ?    6.6   0.0     0.016        16       2      35 ..     177     210 ..     176     219 .. 0.90
   4 ?    0.4   0.0       1.7   1.6e+03      11      31 ..     222     242 ..     214     252 .. 0.85
   5 !   12.6   0.0    0.0002       0.2       5      35 ..     254     284 ..     250     292 .. 0.88
   6 ?    2.4   0.0      0.36   3.6e+02       5      30 ..     365     390 ..     362     406 .. 0.78
   7 ?    6.9   0.0     0.013        13       4      29 ..     472     497 ..     469     503 .. 0.86
   8 ?    4.2   0.1     0.095        95       3      34 ..     508     539 ..     506     551 .. 0.83
   9 ?    4.5   0.3      0.08        80       1      35 [.     582     616 ..     582     625 .. 0.88
  10 ?   -1.9   0.0       8.6   8.6e+03       3      28 ..     621     646 ..     619     650 .. 0.82
  11 ?    5.1   0.0     0.052        52       2      33 ..     654     685 ..     653     699 .. 0.86
  12 ?   -1.5   0.0       6.5   6.4e+03      12      28 ..     744     760 ..     735     763 .. 0.81
  13 ?    1.6   0.0      0.68   6.8e+02       7      39 ..     797     830 ..     792     835 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0024
      TPR_14   7 laeallalGdpdeAiallrrala 29 
                 +aea++a G++ eAi+ ++ a +
  CCG91902.1 109 RAEAYRAMGKWTEAIREYETAEK 131
                 89*****************9965 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 8.8
      TPR_14   4 llalaeallalGdpdeAiallr 25 
                 + + +  l++ G+++eA +   
  CCG91902.1 143 WIRKGFSLWQDGKTKEAQETIS 164
                 55666679********988765 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.016
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPdda 35 
                 eall  +++ l +G+  eA ++++ ++a+ P+++
  CCG91902.1 177 EALLIFGKIALSNGNQNEAKEYFHSVIAKSPNSE 210
                 788899999**********************986 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 1.7
      TPR_14  11 llalGdpdeAiallrralala 31 
                 ll++  p+eA+ +++ ++++a
  CCG91902.1 222 LLEQNHPQEAVPYFQSVVDQA 242
                 567899*********999887 PP

  == domain 5  score: 12.6 bits;  conditional E-value: 0.0002
      TPR_14   5 lalaeallalGdpdeAiallrralalaPdda 35 
                 l+l++ +lal+++ +A++++++ l+l+ +++
  CCG91902.1 254 LELGKTYLALEETGKAMQAFEKGLSLCKKEE 284
                 89************************99854 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.36
      TPR_14   5 lalaeallalGdpdeAiallrralal 30 
                 + l++++++ G  + A +++ +ala 
  CCG91902.1 365 YSLGRIYYEMGSKEPATKYFYKALAS 390
                 6799*******************993 PP

  == domain 7  score: 6.9 bits;  conditional E-value: 0.013
      TPR_14   4 llalaeallalGdpdeAiallrrala 29 
                 +l  a + ++l ++d Ai +l++al+
  CCG91902.1 472 YLTEANLWEELNQFDNAIGILEKALS 497
                 6666888999**************98 PP

  == domain 8  score: 4.2 bits;  conditional E-value: 0.095
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdd 34 
                 +ll l++++l + +++eA + + r+++++P+d
  CCG91902.1 508 LLLNLGKLFLKQAKYAEATEEFMRLCDDYPTD 539
                 577899************************98 PP

  == domain 9  score: 4.5 bits;  conditional E-value: 0.08
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPdda 35 
                 p+al  +ae+ +   d+ +A+ l++++ +++P+++
  CCG91902.1 582 PKALFSAAEYAYDEADFYGARWLFEEVPKDYPNSE 616
                 57888899999*********************986 PP

  == domain 10  score: -1.9 bits;  conditional E-value: 8.6
      TPR_14   3 allalaeallalGdpdeAiallrral 28 
                 a++ + +a  +  d+ +A+ ll+++ 
  CCG91902.1 621 AYYWASKAAIECKDLSGAVLLLEKIP 646
                 78888999999999999999999874 PP

  == domain 11  score: 5.1 bits;  conditional E-value: 0.052
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPd 33 
                 ea+l+ +++++ + ++ +A+ l++ +l++ P+
  CCG91902.1 654 EARLLQGKIYFDQSQYPAAVSLFDGVLDKEPT 685
                 799*************************9995 PP

  == domain 12  score: -1.5 bits;  conditional E-value: 6.5
      TPR_14  12 lalGdpdeAiallrral 28 
                   +G+ ++A+a + ++l
  CCG91902.1 744 QKQGRIEDALASFLDVL 760
                 4689*****99998775 PP

  == domain 13  score: 1.6 bits;  conditional E-value: 0.68
      TPR_14   7 laeallalGdpdeAiallrralal.aPddaeawl 39 
                 +a + +++ d+ +A++++r++ +l +P+++e++ 
  CCG91902.1 797 AALIKEEQKDWVGALTIYRKLESLgGPTQQEFHE 830
                 5667789999*************95599988875 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.9e+03      44      61 ..      65      82 ..      52      90 .. 0.55
   2 !   10.1   0.1   0.00077      0.77       9      29 ..     109     129 ..     103     161 .. 0.68
   3 !    6.8   0.0    0.0083       8.3       5      68 ..     142     199 ..     136     205 .. 0.87
   4 !    7.9   0.0    0.0037       3.7      45      77 .]     250     282 ..     222     282 .. 0.74
   5 !   13.0   0.5   9.8e-05     0.098      15      73 ..     336     389 ..     333     392 .. 0.92
   6 ?   -2.6   0.1       6.9   6.9e+03      51      61 ..     420     430 ..     399     436 .. 0.57
   7 ?    1.6   0.0      0.35   3.5e+02      45      72 ..     469     496 ..     449     500 .. 0.69
   8 !    8.4   0.4    0.0026       2.6      16      68 ..     482     529 ..     467     537 .. 0.77
   9 ?    4.4   0.0     0.045        45      29      69 ..     638     677 ..     632     681 .. 0.78
  10 !    7.5   0.0     0.005         5       8      31 ..     738     761 ..     732     767 .. 0.68
  11 ?   -1.5   0.0       3.2   3.2e+03      10      28 ..     798     816 ..     795     820 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
      TPR_12 44 tattlrnLgrlyralgry 61
                +a+++   +++++ l +y
  CCG91902.1 65 LAAVYLKHAEALYFLAKY 82
                333333333333333333 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00077
      TPR_12   9 laavlrrlgrydeAlelleka 29 
                 +a+++r++g+++eA++ +e+a
  CCG91902.1 109 RAEAYRAMGKWTEAIREYETA 129
                 799999********9999998 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0083
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 ++ + +  l++ g+  eA+e   k+      l+ ++ +  a++l   g + +  g++ eA e++
  CCG91902.1 142 VWIRKGFSLWQDGKTKEAQETISKV------LHSKNAASCAEALLIFGKIALSNGNQNEAKEYF 199
                 6678899999999999999999999......56788889**********************998 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0037
      TPR_12  45 attlrnLgrlyralgryeeAlelleealaiaek 77 
                 +     Lg +y+al+++ +A +++e+ l +++k
  CCG91902.1 250 ILGFLELGKTYLALEETGKAMQAFEKGLSLCKK 282
                 5556789*********************99986 PP

  == domain 5  score: 13.0 bits;  conditional E-value: 9.8e-05
      TPR_12  15 rlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 + ++yd Al llek l+ + +llG+d+    ++ + Lgr+y+++g  e A +++ +ala
  CCG91902.1 336 KNEQYDFALLLLEKLLDSQ-SLLGTDK----QVEYSLGRIYYEMGSKEPATKYFYKALA 389
                 6799***************.6779988....799***********************98 PP

  == domain 6  score: -2.6 bits;  conditional E-value: 6.9
      TPR_12  51 Lgrlyralgry 61 
                  +++++++g++
  CCG91902.1 420 FAQAFQKQGEL 430
                 34444444444 PP

  == domain 7  score: 1.6 bits;  conditional E-value: 0.35
      TPR_12  45 attlrnLgrlyralgryeeAlelleeal 72 
                 ++++ + + l ++l++++ A+ +le+al
  CCG91902.1 469 LEIYLTEANLWEELNQFDNAIGILEKAL 496
                 5666666666667778888888888777 PP

  == domain 8  score: 8.4 bits;  conditional E-value: 0.0026
      TPR_12  16 lgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 l ++d A+ +lekal     l   ++ + a+ l nLg l++++ +y+eA e +
  CCG91902.1 482 LNQFDNAIGILEKALSDP--L--IKK-EKAILLLNLGKLFLKQAKYAEATEEF 529
                 677888888888884444..5..333.4799*****************97766 PP

  == domain 9  score: 4.4 bits;  conditional E-value: 0.045
      TPR_12  29 aleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                 a+ + ++++ +++p  ++++   g +y+ + +y +A++l+ 
  CCG91902.1 638 AVLLLEKIP-ENSPIKSEARLLQGKIYFDQSQYPAAVSLFD 677
                 556666665.6889999999999999999999999999885 PP

  == domain 10  score: 7.5 bits;  conditional E-value: 0.005
      TPR_12   8 nlaavlrrlgrydeAlellekale 31 
                 + a++l+++gr ++Al+ +  +l+
  CCG91902.1 738 KFAVCLQKQGRIEDALASFLDVLN 761
                 457777777777777777766654 PP

  == domain 11  score: -1.5 bits;  conditional E-value: 3.2
      TPR_12  10 aavlrrlgrydeAlellek 28 
                 a++  +++++  Al++++k
  CCG91902.1 798 ALIKEEQKDWVGALTIYRK 816
                 6777888999999998887 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.094        93       5      28 ..     107     130 ..     103     132 .. 0.87
   2 ?    6.2   0.0     0.015        14       2      28 ..     141     167 ..     140     171 .. 0.93
   3 !    9.0   0.1    0.0018       1.8       1      24 [.     176     199 ..     176     204 .. 0.93
   4 ?   -2.2   0.0         7     7e+03      13      27 ..     224     238 ..     222     240 .. 0.79
   5 !   13.6   0.1   5.8e-05     0.057       6      33 ..     255     282 ..     252     283 .. 0.92
   6 !   12.9   0.1   9.8e-05     0.098       5      29 ..     365     389 ..     365     394 .. 0.92
   7 ?    5.1   0.1     0.031        31       2      29 ..     470     497 ..     469     497 .. 0.87
   8 ?    5.4   0.2     0.025        25       4      27 ..     509     532 ..     506     534 .. 0.89
   9 ?   -0.4   0.2       1.9   1.9e+03       2      26 ..     620     644 ..     619     645 .. 0.88
  10 ?    0.5   0.0      0.92   9.2e+02       2      24 ..     654     676 ..     653     681 .. 0.83
  11 ?    1.1   0.3      0.59   5.8e+02       9      24 ..     703     718 ..     699     723 .. 0.61
  12 ?    2.7   0.0      0.19   1.9e+02       3      28 ..     735     760 ..     733     761 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.094
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekal 28 
                 ++ + +y+ +g+  eA+  ye a 
  CCG91902.1 107 FWRAEAYRAMGKWTEAIREYETAE 130
                 7899*****************985 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.015
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 +++ ++g  +++ g+ +eA+e++ k+l
  CCG91902.1 141 KVWIRKGFSLWQDGKTKEAQETISKVL 167
                 68*******************999986 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0018
                 CCHHHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyy 24 
                 aea++  g+i l+ g+ +eAkey+
  CCG91902.1 176 AEALLIFGKIALSNGNQNEAKEYF 199
                 6899999****************9 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 7
                 HTT-HHHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyeka 27 
                 +++  +eA+ y++ +
  CCG91902.1 224 EQNHPQEAVPYFQSV 238
                 678889******866 PP

  == domain 5  score: 13.6 bits;  conditional E-value: 5.8e-05
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpd 33 
                  lg++yl l++  +A++++ek l+l ++
  CCG91902.1 255 ELGKTYLALEETGKAMQAFEKGLSLCKK 282
                 69**********************9875 PP

  == domain 6  score: 12.9 bits;  conditional E-value: 9.8e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekale 29 
                 y lg+iy ++g +e A +y+ kal 
  CCG91902.1 365 YSLGRIYYEMGSKEPATKYFYKALA 389
                 789********************95 PP

  == domain 7  score: 5.1 bits;  conditional E-value: 0.031
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 e+y+  +++ ++l+++++A+  +ekal+
  CCG91902.1 470 EIYLTEANLWEELNQFDNAIGILEKALS 497
                 677777888899**************96 PP

  == domain 8  score: 5.4 bits;  conditional E-value: 0.025
                 HHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyeka 27 
                 ++nlg++ lk+ +y eA e +++ 
  CCG91902.1 509 LLNLGKLFLKQAKYAEATEEFMRL 532
                 79*****************99986 PP

  == domain 9  score: -0.4 bits;  conditional E-value: 1.9
                 CHHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyek 26 
                 +ayy+ +++ ++ +d+  A+  +ek
  CCG91902.1 620 QAYYWASKAAIECKDLSGAVLLLEK 644
                 79*************9999887777 PP

  == domain 10  score: 0.5 bits;  conditional E-value: 0.92
                 CHHHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyy 24 
                 ea ++ g+iy+++ +y +A++ +
  CCG91902.1 654 EARLLQGKIYFDQSQYPAAVSLF 676
                 678899*******9999988776 PP

  == domain 11  score: 1.1 bits;  conditional E-value: 0.59
                 HHHHHTT-HHHHHHHH CS
       TPR_8   9 siylklgdyeeAkeyy 24 
                 ++ ++++ y+eA + y
  CCG91902.1 703 MAAKEKKYYQEASSLY 718
                 5666666666666655 PP

  == domain 12  score: 2.7 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekal 28 
                 a ++ + +++k+g++e A +++  +l
  CCG91902.1 735 AAFKFAVCLQKQGRIEDALASFLDVL 760
                 66788999*************98766 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.3    0.0014       1.4       6      24 ..     110     128 ..     109     138 .. 0.91
   2 ?   -0.5   0.0       1.7   1.7e+03       7      35 ..     184     210 ..     178     211 .. 0.83
   3 ?    0.7   0.0      0.67   6.7e+02      11      27 ..     224     238 ..     222     249 .. 0.81
   4 ?    3.3   0.1     0.098        98       3      27 ..     254     278 ..     253     287 .. 0.83
   5 ?   -2.4   0.0       6.6   6.5e+03       4      14 ..     366     376 ..     365     393 .. 0.67
   6 ?   -1.6   0.0       3.6   3.6e+03       6      13 ..     421     428 ..     399     432 .. 0.52
   7 !   11.2   0.0   0.00031      0.31       6      28 ..     476     496 ..     476     500 .. 0.90
   8 ?    5.7   0.0     0.017        17       2      18 ..     509     525 ..     508     529 .. 0.92
   9 !    8.4   0.0    0.0024       2.4       6      35 ..     660     687 ..     656     688 .. 0.91
  10 ?   -0.0   0.0       1.2   1.2e+03       6      24 ..     740     758 ..     740     768 .. 0.81
  11 ?   -1.2   0.0       2.8   2.8e+03      10      24 ..     802     816 ..     797     830 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0014
       TPR_7   6 arlysrlGdyeeAielyeq 24 
                 a++y+++G++ eAi+ ye 
  CCG91902.1 110 AEAYRAMGKWTEAIREYET 128
                 89***************97 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
       TPR_7   7 rlysrlGdyeeAielyeqsLaltkdpeda 35 
                  +  + G+  eA e++    +++k+p+ +
  CCG91902.1 184 KIALSNGNQNEAKEYFHS--VIAKSPNSE 210
                 5667789999********..999999865 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.67
       TPR_7  11 rlGdyeeAielyeqsLa 27 
                 ++++ +eA+ +++   +
  CCG91902.1 224 EQNHPQEAVPYFQS--V 238
                 78999*******97..4 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.098
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLa 27 
                 l L+ +y +l ++ +A + +e+ L 
  CCG91902.1 254 LELGKTYLALEETGKAMQAFEKGLS 278
                 679******************9444 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 6.6
       TPR_7   4 nLarlysrlGd 14 
                  L+r+y ++G 
  CCG91902.1 366 SLGRIYYEMGS 376
                 69999988885 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 3.6
       TPR_7   6 arlysrlG 13 
                 a++++++G
  CCG91902.1 421 AQAFQKQG 428
                 44455555 PP

  == domain 7  score: 11.2 bits;  conditional E-value: 0.00031
       TPR_7   6 arlysrlGdyeeAielyeqsLal 28 
                 a+l+++l+++++Ai+++e+  al
  CCG91902.1 476 ANLWEELNQFDNAIGILEK--AL 496
                 89*****************..54 PP

  == domain 8  score: 5.7 bits;  conditional E-value: 0.017
       TPR_7   2 LlnLarlysrlGdyeeA 18 
                 LlnL+ l+ ++ +y+eA
  CCG91902.1 509 LLNLGKLFLKQAKYAEA 525
                 89**************9 PP

  == domain 9  score: 8.4 bits;  conditional E-value: 0.0024
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkdpeda 35 
                 + +y+++ +y  A++l+    +l+k+p+++
  CCG91902.1 660 GKIYFDQSQYPAAVSLFDG--VLDKEPTGK 687
                 89*****************..999999875 PP

  == domain 10  score: -0.0 bits;  conditional E-value: 1.2
       TPR_7   6 arlysrlGdyeeAielyeq 24 
                 a++ +++G+ e+A+  +  
  CCG91902.1 740 AVCLQKQGRIEDALASFLD 758
                 67899********998866 PP

  == domain 11  score: -1.2 bits;  conditional E-value: 2.8
       TPR_7  10 srlGdyeeAielyeq 24 
                 +++ d+  A+++y++
  CCG91902.1 802 EEQKDWVGALTIYRK 816
                 67889999*****99 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.4   0.00059      0.58      14      80 ..      57     127 ..      51     129 .. 0.87
   2 ?    5.4   0.0     0.021        21      26      49 ..     106     129 ..      95     140 .. 0.83
   3 ?    3.6   0.2     0.078        78      32      76 ..     149     196 ..     128     202 .. 0.75
   4 ?    3.4   0.1     0.092        91       4      49 ..     155     202 ..     152     238 .. 0.54
   5 ?    2.2   1.6      0.21   2.1e+02      29      80 ..     256     311 ..     224     313 .. 0.73
   6 !    9.9   1.1   0.00085      0.84       2      71 ..     337     410 ..     336     432 .. 0.86
   7 !    9.6   0.1    0.0011       1.1       3      49 ..     483     532 ..     481     552 .. 0.80
   8 ?    6.4   0.1      0.01        10      15      81 ..     574     644 ..     561     645 .. 0.84
   9 !   11.5   0.1   0.00027      0.27       3      75 ..     633     714 ..     631     721 .. 0.73
  10 !   11.1   0.1   0.00036      0.36       2      51 ..     708     762 ..     707     770 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00059
                 HHH.HHH--HHHHHHH.HHHHHHTT-HHHHHHHHHCTSHHHC-H....HHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  14 rllaaetespedayll.AlclylngqykrAyellrkaklnsksl....gcrylfAqcllkLkkyeeAiaaLe 80 
                 + +  ++ ++ ++yl+ A++ly + +y+   +ll++++l + s     ++++  A+++ +++k+ eAi+ +e
  CCG91902.1  57 KNY-PQSSDLAAVYLKhAEALYFLAKYEDLVTLLSQKGLPPFSVedsgKIAFWRAEAYRAMGKWTEAIREYE 127
                 556.6778889999956********************9988888888899*****************98766 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.021
                 HHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  26 ayllAlclylngqykrAyellrka 49 
                 a++ A+++  +g++++A++ +++a
  CCG91902.1 106 AFWRAEAYRAMGKWTEAIREYETA 129
                 8999************99877766 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.078
                 HHHHTT-HHHHHHHHHCTSHHHC-H....HHHHHHHHHHHHTT-HHHHH CS
      ANAPC3  32 clylngqykrAyellrkaklnsksl....gcrylfAqcllkLkkyeeAi 76 
                 +l ++g+ k+A+e ++k  l sk+     +++++f++ +l  ++ +eA 
  CCG91902.1 149 SLWQDGKTKEAQETISKV-LHSKNAascaEALLIFGKIALSNGNQNEAK 196
                 567889999999999998.444444446688899999999888888885 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.092
                 -HHHHHHHHHHHH..HHH--.HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3   4 nyknAiflaerll.aaetes.pedayllAlclylngqykrAyellrka 49 
                 ++k+A   ++++l ++++ s +e+++ +++  ++ng+ ++A e++++ 
  CCG91902.1 155 KTKEAQETISKVLhSKNAAScAEALLIFGKIALSNGNQNEAKEYFHSV 202
                 445555555555521222330333444566666666666666666666 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.21
                 HHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHH....HHHHHTT-HHHHHHHH- CS
      ANAPC3  29 lAlclylngqykrAyellrkaklnskslgcrylfA....qcllkLkkyeeAiaaLe 80 
                 l+++++ +++  +A++ ++k  + +k ++  +lf      ++++L++++eA++ L+
  CCG91902.1 256 LGKTYLALEETGKAMQAFEKGLSLCKKEELQLLFVkyylDAAIALSRLNEARQKLF 311
                 689999999999999999999555665544444443477889999******98775 PP

  == domain 6  score: 9.9 bits;  conditional E-value: 0.00085
                 TT-HHHHHHHHHHHH....HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT- CS
      ANAPC3   2 qnnyknAiflaerll...aaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkk 71 
                 +++y+ A++l+e+ll   +    + +  y l+  +y++g  + A +++ ka  + + +   + lf   l++++k
  CCG91902.1 337 NEQYDFALLLLEKLLdsqSLLGTDKQVEYSLGRIYYEMGSKEPATKYFYKAlASTDAHVSEHALFYLGLIDYDK 410
                 79*************653366777788999*****************999988888888888888887777744 PP

  == domain 7  score: 9.6 bits;  conditional E-value: 0.0011
                 T-HHHHHHHHHHHH..HHH--HHHHHHH..HHHHHHTT-HHHHHHHHHCT CS
      ANAPC3   3 nnyknAiflaerlla.aetespedayll..AlclylngqykrAyellrka 49 
                 n+++nAi ++e++l+    + +++++ll  ++ ++++ +y +A e + ++
  CCG91902.1 483 NQFDNAIGILEKALSdPLIKKEKAILLLnlGKLFLKQAKYAEATEEFMRL 532
                 89************6566899999999666************98766555 PP

  == domain 8  score: 6.4 bits;  conditional E-value: 0.01
                 HH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-H...HHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  15 llaaetespedayllAlclylngqykrAyellrka.klnsksl...gcrylfAqcllkLkkyeeAiaaLek 81 
                  + +++  p++++  A+  y   +++ A  l+++  k +++s+   ++ y + +++++ k +  A+ +Lek
  CCG91902.1 574 KYPSDPIAPKALFSAAEYAYDEADFYGARWLFEEVpKDYPNSElgdQAYYWASKAAIECKDLSGAVLLLEK 644
                 3458888999*********************************9*66666666*******99999999987 PP

  == domain 9  score: 11.5 bits;  conditional E-value: 0.00027
                 T-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-H...HHHHHHHHHHHHT.....T-HHHH CS
      ANAPC3   3 nnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnsksl...gcrylfAqcllkL.....kkyeeA 75 
                 +++  A++l+e++ + ++  +e+++l ++ ++ ++qy  A  l++   +++++ +    +++ +A c +++     k y+eA
  CCG91902.1 633 KDLSGAVLLLEKIPENSPIKSEARLLQGKIYFDQSQYPAAVSLFDGVlDKEPTGKlhvIALLRKADCFFAMaakekKYYQEA 714
                 5677899************************************999977776666555333334455444433332445665 PP

  == domain 10  score: 11.1 bits;  conditional E-value: 0.00036
                 TT-HHHHHHHHHHHH.....HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SH CS
      ANAPC3   2 qnnyknAiflaerll....aaetespedayllAlclylngqykrAyellrka.kl 51 
                 ++ y++A  l++ +     a   e +e+a+ +A cl ++g+ + A+  + +  + 
  CCG91902.1 708 KKYYQEASSLYSNVIkdpsADIEEKDEAAFKFAVCLQKQGRIEDALASFLDVlNG 762
                 6789999999999996554488999999999999999999999999876666444 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       0.7     7e+02      41      83 ..      31      73 ..      27      89 .. 0.82
   2 !    9.5   1.1   0.00073      0.73      54     187 ..     155     291 ..     108     298 .. 0.74
   3 ?    5.4   0.2     0.013        13      91     180 ..     302     395 ..     294     403 .. 0.75
   4 !   19.3   0.3   7.4e-07   0.00074      30     135 ..     423     528 ..     419     540 .. 0.95
   5 !   10.9   0.0   0.00028      0.28      56     178 ..     562     685 ..     545     695 .. 0.84
   6 ?    1.6   0.2       0.2   1.9e+02      83     134 ..     702     754 ..     695     765 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.7
      TPR_21 41 alYqqlqeaveakdaakakeaaeeladeyggtaYaalaaLllA 83
                 lY+q++e+++++   ++ e+ +e++++y++++  a   L  A
  CCG91902.1 31 HLYDQINESMDDSLLSRVVELSKEFEKNYPQSSDLAAVYLKHA 73
                6899***999999999999999***999999965555555555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00073
      TPR_21  54 daakakeaaee.ladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakk.eeafaalvae 150
                 ++++a+e +++ l ++++ +   a a L+  k a ++g+ ++Ak+ +++v++k+++ e    a+   +  ll++++ +eA+   +++  +++f+  ++ 
  CCG91902.1 155 KTKEAQETISKvLHSKNAAS--CAEALLIFGKIALSNGNQNEAKEYFHSVIAKSPNSESGIEAK-YWTGKLLEQNHPQEAVPYFQSVVdQAGFSRDINI 250
                 33334444333044444444..566779999999999999999999999999999986554444.4677788999999999999876515678887765 PP

      TPR_21 151 lr....GDilvaqgkldeAraaYqaAlaaleekarellqlK 187
                 l     G  ++a +++ +A +a++++l+  ++++ +ll +K
  CCG91902.1 251 LGflelGKTYLALEETGKAMQAFEKGLSLCKKEELQLLFVK 291
                 52333399999999999999999999999998887776666 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.013
      TPR_21  91 dlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktL....eakkeeafaalvaelrGDilvaqgkldeAraaYqaAlaaleeka 180
                  l++A+++L ++   +k  ++ a +r   a+  +++++yd Al +L    ++++  + + +v+   G i++++g ++ A + + +Ala+ +++ 
  CCG91902.1 302 RLNEARQKLFSMFPLEKGSKIGAWVRFIEAEEEAKNEQYDFALLLLekllDSQSLLGTDKQVEYSLGRIYYEMGSKEPATKYFYKALASTDAHV 395
                 56677777777777777777777777777778889999999996662222556666678888889999***********999999999998875 PP

  == domain 4  score: 19.3 bits;  conditional E-value: 7.4e-07
      TPR_21  30 dyqeeqaeeAsalYqqlqeaveakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekk 128
                   q++ + e  alY+ l++ ++ ++ +++ +a e++  +y+ +++     L  A+   e +++++A   Le++l++   ++ ka+  l L ++ l++ k
  CCG91902.1 423 AFQKQGELEEEALYNVLLSRARMHNVDDFLKAKEAFLLKYPTSSFRLEIYLTEANLWEELNQFDNAIGILEKALSDPLIKKEKAILLLNLGKLFLKQAK 521
                 56788888999**************************************************************************************** PP

      TPR_21 129 ydeAlkt 135
                 y+eA ++
  CCG91902.1 522 YAEATEE 528
                 ****875 PP

  == domain 5  score: 10.9 bits;  conditional E-value: 0.00028
      TPR_21  56 akakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakkeea.faalvaelrG 153
                 ++a+e++ e+  +y++ + a  a + +A+ a+++ d+  A+  +e+v ++ ++ el + a     +  ++ k++  A+ +Le+ +e++  ++++  l+G
  CCG91902.1 562 HAAREKMIEILRKYPSDPIAPKALFSAAEYAYDEADFYGARWLFEEVPKDYPNSELGDQAYYWASKAAIECKDLSGAVLLLEKIPENSpIKSEARLLQG 660
                 457778888999999999999999999999999999999999999999999999999999999999999999999999999998765437888889999 PP

      TPR_21 154 DilvaqgkldeAraaYqaAlaalee 178
                  i++ q +   A + ++  l++  +
  CCG91902.1 661 KIYFDQSQYPAAVSLFDGVLDKEPT 685
                 9999999999998887777777665 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.2
      TPR_21  83 AkaaveagdlaaAkaqLewvleka.kdeelkalarlRLarvllaekkydeAlk 134
                 A aa e++ +++A++ +++v+++  +d e k+ a  + a  l +++ +++Al+
  CCG91902.1 702 AMAAKEKKYYQEASSLYSNVIKDPsADIEEKDEAAFKFAVCLQKQGRIEDALA 754
                 55555666666666666666655313445556666666666666666666665 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.5    0.0041         4       9      28 ..     110     129 ..     109     129 .. 0.93
   2 ?   -2.0   0.0       3.8   3.8e+03      14      30 ..     188     204 ..     183     205 .. 0.84
   3 ?   -0.9   0.0       1.7   1.7e+03      13      29 ..     223     239 ..     222     240 .. 0.78
   4 ?    2.8   0.0      0.12   1.2e+02       8      34 ..     256     282 ..     254     283 .. 0.93
   5 !    7.8   0.0     0.003         3       8      31 ..     367     390 ..     365     398 .. 0.91
   6 ?    1.7   0.0      0.27   2.6e+02      10      30 ..     477     497 ..     476     498 .. 0.85
   7 ?   -0.8   0.1       1.6   1.6e+03       5      23 ..     509     527 ..     506     531 .. 0.86
   8 ?   -0.5   0.0       1.3   1.3e+03      10      29 ..     661     680 ..     660     682 .. 0.85
   9 ?    1.8   0.0      0.24   2.4e+02      12      32 ..     743     763 ..     740     767 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0041
      TPR_10   9 analrqrgrydeAealleea 28 
                 a a+r++g+++eA + +e a
  CCG91902.1 110 AEAYRAMGKWTEAIREYETA 129
                 789**************987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.8
      TPR_10  14 qrgrydeAealleeala 30 
                 + g+ +eA ++++ ++a
  CCG91902.1 188 SNGNQNEAKEYFHSVIA 204
                 57999******998886 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.7
      TPR_10  13 rqrgrydeAealleeal 29 
                  +++  +eA+ +++ ++
  CCG91902.1 223 LEQNHPQEAVPYFQSVV 239
                 57889999999998765 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.12
      TPR_10   8 LanalrqrgrydeAealleealairrr 34 
                 L+ ++ ++ +  +A++ +e+ l+++++
  CCG91902.1 256 LGKTYLALEETGKAMQAFEKGLSLCKK 282
                 999********************9997 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.003
      TPR_10   8 LanalrqrgrydeAealleealai 31 
                 L+++++++g  + A +++ +ala 
  CCG91902.1 367 LGRIYYEMGSKEPATKYFYKALAS 390
                 9*********************96 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.27
      TPR_10  10 nalrqrgrydeAealleeala 30 
                 n+  +++++d A  +le+al+
  CCG91902.1 477 NLWEELNQFDNAIGILEKALS 497
                 6666899************96 PP

  == domain 7  score: -0.8 bits;  conditional E-value: 1.6
      TPR_10   5 lnNLanalrqrgrydeAea 23 
                 l NL+ +  ++ +y+eA +
  CCG91902.1 509 LLNLGKLFLKQAKYAEATE 527
                 779*************976 PP

  == domain 8  score: -0.5 bits;  conditional E-value: 1.3
      TPR_10  10 nalrqrgrydeAealleeal 29 
                  +++++ +y +A+ l++ +l
  CCG91902.1 661 KIYFDQSQYPAAVSLFDGVL 680
                 68***********9998766 PP

  == domain 9  score: 1.8 bits;  conditional E-value: 0.24
      TPR_10  12 lrqrgrydeAealleealair 32 
                 l+++gr ++A+a + ++l+ r
  CCG91902.1 743 LQKQGRIEDALASFLDVLNGR 763
                 789*********999998765 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.6   2.5e-05     0.025       2      22 ..     111     131 ..     110     133 .. 0.91
   2 ?    0.9   0.0      0.36   3.6e+02       1      25 [.     257     281 ..     257     283 .. 0.92
   3 ?    0.4   0.0      0.53   5.2e+02      32      42 .]     365     375 ..     363     378 .. 0.84
   4 ?   -1.5   0.1       2.1   2.1e+03       1      20 [.     404     423 ..     404     432 .. 0.63
   5 ?    4.0   0.1      0.04        40       7      41 ..     482     519 ..     481     519 .. 0.86
   6 ?    5.4   0.0     0.015        14       1      14 [.     660     673 ..     660     685 .. 0.88
   7 ?    0.2   0.0       0.6     6e+02       6      17 ..     745     756 ..     743     761 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.5e-05
      TPR_11   2 dayyeqGkyeeAieaYkkAlk 22 
                  ay++ Gk++eAi +Y++A k
  CCG91902.1 111 EAYRAMGKWTEAIREYETAEK 131
                 59*****************87 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.36
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldP 25 
                 G+ y ++ +  +A++a++k l l+ 
  CCG91902.1 257 GKTYLALEETGKAMQAFEKGLSLCK 281
                 8899*****************9986 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.53
      TPR_11  32 ynLGlayykqG 42 
                 y LG +yy++G
  CCG91902.1 365 YSLGRIYYEMG 375
                 78888888887 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 2.1
      TPR_11   1 GdayyeqGkyeeAieaYkkA 20 
                 G + y++ k+e++  ++ +A
  CCG91902.1 404 GLIDYDKSKFEDSADKFAQA 423
                 55667777777766666555 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.04
      TPR_11   7 qGkyeeAieaYkkAlk...ldPdnaeayynLGlayykq 41 
                 ++++++Ai  ++kAl    ++ + a +++nLG++++kq
  CCG91902.1 482 LNQFDNAIGILEKALSdplIKKEKAILLLNLGKLFLKQ 519
                 788888888888888877789999***********997 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.015
      TPR_11   1 GdayyeqGkyeeAi 14 
                 G++y++q +y++A+
  CCG91902.1 660 GKIYFDQSQYPAAV 673
                 99***********8 PP

  == domain 7  score: 0.2 bits;  conditional E-value: 0.6
      TPR_11   6 eqGkyeeAieaY 17 
                 +qG++e+A++++
  CCG91902.1 745 KQGRIEDALASF 756
                 79*******987 PP

>> YfiO  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.3     0.021        21       6      59 ..      30      83 ..      27      91 .. 0.74
   2 ?    2.1   0.1      0.14   1.4e+02      17      70 ..     115     168 ..     100     210 .. 0.81
   3 ?   -0.1   0.0      0.63   6.2e+02      12      44 ..     183     215 ..     172     232 .. 0.77
   4 ?   -1.0   1.9       1.2   1.2e+03      11      96 ..     330     414 ..     326     478 .. 0.58
   5 !   10.0   0.1   0.00053      0.53      16      74 ..     517     577 ..     508     582 .. 0.64
   6 !   15.3   0.7   1.2e-05     0.012       5      73 ..     582     650 ..     578     719 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.021
                HHHHHHHHHHHHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HH CS
        YfiO  6 selYekgqealqkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadya 59
                ++lY++  e++ ++  +  ++  ++ ++ yP+s   + + l+ + A y  a y+
  CCG91902.1 30 KHLYDQINESMDDSLLSRVVELSKEFEKNYPQSSDLAAVYLKHAEALYFLAKYE 83
                677888888888888888888888888888888888888888888877665555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.14
                 HHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
        YfiO  17 qkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlr 70 
                 + g+++eAi++ e ++++ +     e++ +    + ++d+ + ea++++ + l+
  CCG91902.1 115 AMGKWTEAIREYETAEKYLLDTALLEKVWIRKGFSLWQDGKTKEAQETISKVLH 168
                 457899999999999999999999999999999999999999999999887666 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.63
                 HHHHHHHT-HHHHHHHHHHHHHHSTTSTTHHHH CS
        YfiO  12 gqealqkgdyaeAikklealdsryPfspyaeqa 44 
                 g+ al++g+ +eA+++++++ ++ P+s+   +a
  CCG91902.1 183 GKIALSNGNQNEAKEYFHSVIAKSPNSESGIEA 215
                 556788888888888888888877777765555 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.2
                 HHHHHHHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SSSTTHHHHHHHHHHHHHHHHSHS CS
        YfiO  11 kgqealqkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlrlyPthknvdyvlYlrglsalaqarel 96 
                 +++e+ ++++y  A   le+l +        +q+++ l   yy+ +  + a ++  + l+    h ++   +Y +gl ++++ +  
  CCG91902.1 330 EAEEEAKNEQYDFALLLLEKLLDSQSLLGTDKQVEYSLGRIYYEMGSKEPATKYFYKALASTDAHVSEHALFY-LGLIDYDKSKFE 414
                 5677777777777777777776665555667788888888888888777777777777777666666544444.456444433322 PP

  == domain 5  score: 10.0 bits;  conditional E-value: 0.00053
                 HHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-H..HHHHHHHHHHHHH-SS CS
        YfiO  16 lqkgdyaeAikklealdsryPfspyaeqaqldliyAyykdady..aealasaerFlrlyPt 74 
                 l++ +yaeA +++  l + yP+ ++ ++a + ++ + y ++ +   +a +++ + lr+yP+
  CCG91902.1 517 LKQAKYAEATEEFMRLCDDYPTDKFVPEALYLAVFSDYLAGHIgaHAAREKMIEILRKYPS 577
                 5666777777777777777777777777777777777766654224566666666666665 PP

  == domain 6  score: 15.3 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-S CS
        YfiO   5 aselYekgqealqkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlrlyP 73 
                 +++l+++++ a+ + d+  A+  +e++ + yP+s+  +qa + + +A+ + +d++ a+  +e+  ++ P
  CCG91902.1 582 PKALFSAAEYAYDEADFYGARWLFEEVPKDYPNSELGDQAYYWASKAAIECKDLSGAVLLLEKIPENSP 650
                 789******************************************************999988766665 PP

>> MTBP_N  MDM2-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00073      0.73      76     140 ..      15      80 ..      10      85 .. 0.79
   2 ?    3.6   0.0     0.038        38      62     103 ..     697     738 ..     680     760 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00073
      MTBP_N  76 QfcsSdWeelsadsekedseeslqtaleeclsa.lqeleeedsnsrdslsltdlleeaAeslhqLs 140
                  +csS W++ +  +ek+  ++  ++  +++ls  ++  +e ++n  +s+ l++++ + Ae l+ L+
  CCG91902.1  15 TYCSSSWNSFALGLEKHLYDQINESMDDSLLSRvVELSKEFEKNYPQSSDLAAVYLKHAEALYFLA 80 
                 69********9999988766665555566666514556677888999999*************998 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.038
      MTBP_N  62 krwffavqail.gsfQfcsSdWeelsadsekedseeslqtale 103
                   +ffa++a+  + +Q++sS + ++ +d    d+ee+ ++a +
  CCG91902.1 697 ADCFFAMAAKEkKYYQEASSLYSNVIKDP-SADIEEKDEAAFK 738
                 569***998751679******99996554.4455555444433 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.1   1.1e+03      20      53 ..     359     392 ..     347     400 .. 0.85
   2 ?    0.2   0.1      0.96   9.6e+02      23      65 ..     398     440 ..     377     450 .. 0.80
   3 ?    0.1   0.0       1.1   1.1e+03      29      73 ..     513     577 ..     504     584 .. 0.50
   4 ?   -2.1   0.0         5     5e+03      16      45 ..     647     676 ..     641     684 .. 0.80
   5 ?   10.1   0.1   0.00078      0.78      21      52 ..     732     763 ..     713     779 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.1
      TPR_20  20 ddldarldlAlallaagryeeAleqLleilkrdr 53 
                 +d + ++ l + +++ g +e A + +++ l+++ 
  CCG91902.1 359 TDKQVEYSLGRIYYEMGSKEPATKYFYKALASTD 392
                 688999999999*****99999999888887665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.96
      TPR_20  23 darldlAlallaagryeeAleqLleilkrdrkweddaarkqll 65 
                  a + l l ++ +++ e++++++ + ++++ + e++a  + ll
  CCG91902.1 398 HALFYLGLIDYDKSKFEDSADKFAQAFQKQGELEEEALYNVLL 440
                 577889999999*************999999988887666655 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.1
      TPR_20  29 AlallaagryeeAleqLleilkrdrkw....................eddaarkqllkifealgs 73 
                  ++ l++ +y+eA e+++++     ++                       aar+++++i+   +s
  CCG91902.1 513 GKLFLKQAKYAEATEEFMRLCDDYPTDkfvpealylavfsdylaghiGAHAAREKMIEILRKYPS 577
                 55555666666666665555443333223333333333333333333445667777776666555 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 5
      TPR_20  16 aanpddldarldlAlallaagryeeAleqL 45 
                 +++p   +arl   + ++ +++y +A++++
  CCG91902.1 647 ENSPIKSEARLLQGKIYFDQSQYPAAVSLF 676
                 577888899999999********9999876 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00078
      TPR_20  21 dldarldlAlallaagryeeAleqLleilkrd 52 
                   +a+++ A  l ++gr e+Al+ +l++l   
  CCG91902.1 732 KDEAAFKFAVCLQKQGRIEDALASFLDVLNGR 763
                 4499************************9754 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.38   3.8e+02      14      33 ..     104     123 ..     101     124 .. 0.86
   2 ?   -0.8   0.1       2.7   2.7e+03      13      34 .]     176     197 ..     168     197 .. 0.82
   3 ?    0.3   0.0       1.2   1.2e+03      17      33 ..     254     270 ..     250     274 .. 0.75
   4 ?   -1.4   0.0         4     4e+03      14      33 ..     470     489 ..     456     489 .. 0.72
   5 ?    3.7   0.0     0.096        96      13      32 ..     506     525 ..     495     527 .. 0.88
   6 ?   -2.1   0.0       6.9   6.8e+03       7      32 ..     647     672 ..     642     673 .. 0.80
   7 ?    1.8   0.0      0.38   3.8e+02      14      33 ..     734     753 ..     732     754 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.38
      TPR_17  14 daynnLAelllknGdlmtAr 33 
                 +  + +Ae+++  G++ +A+
  CCG91902.1 104 KIAFWRAEAYRAMGKWTEAI 123
                 67899**********99997 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.7
      TPR_17  13 adaynnLAelllknGdlmtArq 34 
                 a+a+   +++ l+nG+  +A++
  CCG91902.1 176 AEALLIFGKIALSNGNQNEAKE 197
                 566777789999****999985 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1.2
      TPR_17  17 nnLAelllknGdlmtAr 33 
                  +L++++l + ++++A 
  CCG91902.1 254 LELGKTYLALEETGKAM 270
                 579****9777766664 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 4
      TPR_17  14 daynnLAelllknGdlmtAr 33 
                 + y   A+l++++++++ A+
  CCG91902.1 470 EIYLTEANLWEELNQFDNAI 489
                 56777799999999999885 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.096
      TPR_17  13 adaynnLAelllknGdlmtA 32 
                 a ++ nL++l+lk+ ++++A
  CCG91902.1 506 AILLLNLGKLFLKQAKYAEA 525
                 78899**********99998 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 6.9
      TPR_17   7 eldPnnadaynnLAelllknGdlmtA 32 
                 e+ P  ++a  + ++++  + ++  A
  CCG91902.1 647 ENSPIKSEARLLQGKIYFDQSQYPAA 672
                 55677799999999999999998766 PP

  == domain 7  score: 1.8 bits;  conditional E-value: 0.38
      TPR_17  14 daynnLAelllknGdlmtAr 33 
                 +a +  A++l k+G+ ++A+
  CCG91902.1 734 EAAFKFAVCLQKQGRIEDAL 753
                 688999*********99997 PP

>> DUF2225  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2      0.16   1.6e+02     166     199 ..     162     210 ..      43     218 .. 0.70
   2 ?    2.4   0.5      0.11   1.1e+02     125     198 ..     324     394 ..     273     401 .. 0.83
   3 ?   -3.7   0.0         8     8e+03     116     137 ..     504     526 ..     477     546 .. 0.61
   4 ?    6.2   0.1    0.0075       7.5     135     166 ..     705     736 ..     683     775 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.16
     DUF2225 166 t...............vlYLiaeLerrlgnkeealrwlskvigskkask 199
                 t                l++ ++ +   gn++ea++++  vi ++  s+
  CCG91902.1 162 TiskvlhsknaascaeALLIFGKIALSNGNQNEAKEYFHSVIAKSPNSE 210
                 2222223345555555788888888889999999999988887765555 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.11
     DUF2225 125 AWlyrdkedeekeklflkkAlelykeayekesfpvegideatvlYLiaeLerrlgnkeealrwlskvigskkas 198
                 AW+   + +ee +++ +  Al l ++ + ++s       +++v Y ++   + +g+ke a++++ k + s++a+
  CCG91902.1 324 AWVRFIEAEEEAKNEQYDFALLLLEKLLDSQSL---LGTDKQVEYSLGRIYYEMGSKEPATKYFYKALASTDAH 394
                 666555556777788888888888888887777...45566799**********************99988765 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 8
     DUF2225 116 kkAklalrlAWlyrdked.eeke 137
                 +kA+l+l+l+ l+ ++ +  e  
  CCG91902.1 504 EKAILLLNLGKLFLKQAKyAEAT 526
                 55555555555555554432222 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0075
     DUF2225 135 ekeklflkkAlelykeayekesfpvegideat 166
                 +kek+++++A  ly ++++  s ++e+ dea 
  CCG91902.1 705 AKEKKYYQEASSLYSNVIKDPSADIEEKDEAA 736
                 579********************999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.54
# Mc/sec: 4726.32
//
Query:       CCG91903.1  [L=947]
Description: Excinuclease ABC subunit A, ATPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-29  102.4   0.0    2.9e-29  101.3   0.0    1.6  1  UvrA_inter       UvrA interaction domain
    3.6e-20   72.9   0.3    0.00016   22.2   0.0    4.4  4  ABC_tran         ABC transporter
    2.7e-18   66.3   0.0    5.6e-17   62.1   0.0    2.4  2  UvrA_DNA-bind    UvrA DNA-binding domain
    2.7e-12   46.6   0.0    0.00027   20.5   0.0    4.0  3  SMC_N            RecF/RecN/SMC N terminal domain
    7.7e-10   39.1   3.4     0.0035   17.2   0.0    4.1  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      1e-07   32.5   1.5      0.022   15.2   0.1    3.3  2  AAA_16           AAA ATPase domain
    1.5e-07   31.1   0.2      0.025   14.3   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
    1.1e-05   25.5   0.3       0.12   12.3   0.1    2.4  2  RsgA_GTPase      RsgA GTPase
    1.2e-05   25.6   0.3       0.44   10.8   0.0    3.3  3  AAA_22           AAA domain
    4.6e-05   24.0   3.6      0.037   14.5   0.5    2.6  2  AAA_23           AAA domain
    0.00016   21.1   0.0       0.49    9.6   0.0    2.2  2  DUF2075          Uncharacterized conserved protein (DUF2075)
    0.00061   19.4   0.0       0.28   10.7   0.0    2.9  3  AAA_25           AAA domain
    0.00065   19.5   3.3        1.1    8.9   0.0    3.8  4  AAA_15           AAA ATPase domain
     0.0012   19.4   0.1        1.1    9.8   0.0    2.8  2  AAA_18           AAA domain
     0.0013   18.6   0.0       0.41   10.3   0.0    2.4  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0017   18.5   0.0        1.4    9.0   0.0    2.9  2  AAA_33           AAA domain
     0.0018   18.6   3.3       0.14   12.5   0.2    3.3  3  DnaJ_CXXCXGXG    DnaJ central domain
     0.0019   17.8   0.1       0.61    9.7   0.1    2.5  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0024   17.8   0.0       0.84    9.5   0.0    2.6  2  NACHT            NACHT domain
     0.0031   17.4   0.1        2.4    8.0   0.0    2.5  2  APS_kinase       Adenylylsulphate kinase
     0.0045   16.7   1.4        6.5    6.4   0.0    3.5  3  AAA_24           AAA domain
     0.0046   16.3   0.1        0.5    9.7   0.0    2.5  2  ATPase           KaiC
     0.0062   16.6   0.0        8.2    6.5   0.0    3.3  3  AAA_14           AAA domain
  ------ inclusion threshold ------
      0.012   15.7   0.4       0.35   11.0   0.0    2.9  3  MMR_HSR1         50S ribosome-binding GTPase
      0.013   15.2   0.2        7.9    6.1   0.0    3.5  4  AAA_30           AAA domain
      0.021   15.2   0.0        1.4    9.3   0.0    2.4  2  RNA_helicase     RNA helicase
      0.041   12.9   0.2          3    6.8   0.0    2.9  3  T2SSE            Type II/IV secretion system protein
      0.045   13.5   0.0          6    6.6   0.0    3.3  3  PRK              Phosphoribulokinase / Uridine kinase family
      0.049   13.6   1.1       0.85    9.5   0.1    2.9  3  NTPase_1         NTPase
      0.051   13.1   0.2         13    5.2   0.0    3.0  3  AAA_7            P-loop containing dynein motor region
      0.077   12.0   0.1          2    7.3   0.0    2.4  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
       0.18   11.0   0.0        3.6    6.7   0.0    2.6  3  NB-ARC           NB-ARC domain
        5.5    7.0   5.3       0.65   10.0   0.1    2.0  1  Dynamin_N        Dynamin family


Domain annotation for each model (and alignments):
>> UvrA_inter  UvrA interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.0   5.3e-32   2.9e-29       2     106 ..     134     238 ..     133     241 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 5.3e-32
  UvrA_inter   2 sveqIvdqilkleegtkllilaPvvrerkgefkkllenlkkkGfvrvriDgeiydldedieldknkkhsievvvDrlvvkkeersrlaesvetAlklge 100
                 +ve+Iv+++++l+++t +++laP+++++kg+f  lle+++k+Gf r riDg + +++e ++l  ++ hsie+++Dr++++ + +srl +sve Al++g+
  CCG91903.1 134 TVEEIVARLMALPQQTPVMLLAPLIKKEKGNFIPLLEQMQKEGFLRARIDGRLQEIEEVVSLSPEEAHSIEILIDRIRIEPDITSRLYDSVELALRIGR 232
                 899************************************************************************************************ PP

  UvrA_inter 101 glvivs 106
                 g++   
  CCG91903.1 233 GVLCAV 238
                 *98765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.9e-07   0.00016       1      28 [.      17      44 ..      17      93 .. 0.92
   2 !   15.3   0.0     4e-05     0.022      87     136 ..     470     521 ..     414     522 .. 0.73
   3 !   11.5   0.0   0.00059      0.32       1      29 [.     627     655 ..     627     670 .. 0.87
   4 !   18.5   0.0   3.9e-06    0.0021      89     136 ..     816     863 ..     790     864 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.9e-07
                EEEEEEEEETTSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  1 lknvslklkegekvaivGenGaGKStLl 28
                lkn+sl++ +g++++i+G +G+GKS+L+
  CCG91903.1 17 LKNISLNIPKGQLTVITGVSGSGKSSLA 44
                79************************95 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 4e-05
                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSS..EEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpk..llllDEpt 136
                 + l++l+  +l   +++++  +LSgG+ qrv la  l  + +  l++lDEp+
  CCG91903.1 470 ARLQNLEELGLGYLTLNREIGTLSGGESQRVRLATQLSGELTglLYVLDEPS 521
                 34444444445555666666******************987644889***95 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00059
                 EEEEEEEEETTSEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlk 29 
                 lkn+++ +  g    ++G +G+GKStL++
  CCG91903.1 627 LKNIDIAFPIGLFCCVTGVSGSGKSTLVN 655
                 78999999999999*************97 PP

  == domain 4  score: 18.5 bits;  conditional E-value: 3.9e-06
                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT...SSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkk...pkllllDEpt 136
                 +sk+gl +    ++++ + +LSgG+ qr++la  l +k   ++l++lDEpt
  CCG91903.1 816 MSKVGLGY---LKLGQPAITLSGGEAQRLKLAVELQRKtegRTLYILDEPT 863
                 44555444...34445569****************87733368*******9 PP

>> UvrA_DNA-bind  UvrA DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.63   3.4e+02      79     110 .]      39      70 ..      26      70 .. 0.85
   2 !   62.1   0.0     1e-19   5.6e-17       1     109 [.     294     398 ..     294     399 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.63
                    ......---HHHHHHHHHH-------HHHHHH CS
  UvrA_DNA-bind  79 rsyektfeGvipnlerryreteSeavreelek 110
                     + +  f+ +  + +rry e+ S + r+ le+
     CCG91903.1  39 GKSSLAFDTLYAEGQRRYMESLSVYSRQFLEQ 70 
                    56667888899999*************99986 PP

  == domain 2  score: 62.1 bits;  conditional E-value: 1e-19
                    -S----.-----------GGG.....TT-HHHHHHHHHHHTTTS------------S-THHHHH----...................---HHHHHH CS
  UvrA_DNA-bind   1 DpdlvvpdpslslaegAiapw...sskkssyyrqlleavaehygidldtpfkeLpeeqkdilLyGsgeekikveyksggrkrsyektfeGvipnle 93 
                    Dp+l++pdp+ sl++  +apw       s+++ + l + a+ +g  +d  +++ +ee k+++L+Gs++        s+++kr+  k+feGvip l+
     CCG91903.1 294 DPALLIPDPTVSLKDNPLAPWekiGGGLSKVFLKELLEQAALFGEPIDRSWQDCSEEFKQAILFGSSS-------ISTKKKRKSFKPFEGVIPALK 382
                    9********************5554455555555555555567999*********************8.......46789999************* PP

                    HHHH-------HHHHH CS
  UvrA_DNA-bind  94 rryreteSeavreele 109
                    r y+e++S   +++l+
     CCG91903.1 383 RMYEESKSAILKARLK 398
                    *********9999886 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   4.9e-07   0.00027       5     210 ..       7     564 ..       5     569 .. 0.89
   2 ?    5.0   0.1     0.026        14      15      43 ..     627     656 ..     615     667 .. 0.72
   3 !   14.2   0.0   4.1e-05     0.022     135     210 ..     818     906 ..     684     914 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.9e-07
                 EEEESETTEECEEEEEETTS.SEEEEEESTTSSHHHHHHHHHHHCTT.TT.TTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEE.......SSSS CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.......xxxx RF
       SMC_N   5 leienFksyagktvilpfsk.sftaivGpNGSGKsnlldAilFvLGersa.kklrseklsdlihk.skekasvkkaeveitfdnedkk.......lkie 93 
                 ++i++ k  + k+++l++ k ++t+i+G  GSGKs+l    l+  G+r + ++l   + ++ + + +k + ++ ++ +  +  +++ +       l ++
  CCG91903.1   7 IRIKGAKQHNLKNISLNIPKgQLTVITGVSGSGKSSLAFDTLYAEGQRRYmESLSVYS-RQFLEQlEKPEVELIEGLIPAVAVEQKTSaasprstLATS 104
                 678888888888889888762689************976666****886513444444.4444443556666666766665544444423344332222 PP

                 SSC.EEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT........................................................ CS
                 xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................ RF
       SMC_N  94 kee.vsisrrvkrkgeseykingkevtkkevsellesagiske........................................................ 135
                 ++   +++    + ge ++ + gk+ +k  v+e++++ +  ++                                                        
  CCG91903.1 105 TNIyEYLKLLFAHLGEPHHPLTGKKLKKYTVEEIVARLMALPQqtpvmllaplikkekgnfiplleqmqkegflraridgrlqeieevvslspeeahsi 203
                 21112344455566778889999999999999999999888889******************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CCG91903.1 204 eilidririepditsrlydsvelalrigrgvlcavfqdtqgksgewvmsnlhydpeigflfqelsprhfsynsplgacpkcqglgceldfdpallipdp 302
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CCG91903.1 303 tvslkdnplapwekiggglskvflkelleqaalfgepidrswqdcseefkqailfgsssistkkkrksfkpfegvipalkrmyeesksailkarlkefi 401
                 *************************************************************************************************** PP

                 .........................................................................................CS-HHHHHHH CS
                 .........................................................................................xxxxxxxxxx RF
       SMC_N 136 .........................................................................................lLSgGektLv 145
                                                                                                          +LSgGe + v
  CCG91903.1 402 lsvpckacngqrlnpealavtielkgwpafniskvldltvsealcwvrellasytsdkaaqemlsglaarlqnleelglgyltlnreigTLSGGESQRV 500
                 *************************************************************************************************99 PP

                 HHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 146 alaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvg 210
                  la  ++ +      ly+lDe    L  + ++k+ + +k+ ++    ++v+ ++e+ +++ad +v 
  CCG91903.1 501 RLATQLSGEL--TGLLYVLDEPSIGLHPRDTEKLIRTIKRLKDMgNTVVVVEHDEKSIREADYIVE 564
                 9998876554..4579***********************9998757889999*******9998875 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.026
                 CEEEEEETTSS.EEEEEESTTSSHHHHHHH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
       SMC_N  15 gktvilpfsks.ftaivGpNGSGKsnlldA 43 
                  k++++ f  + f +++G  GSGKs l++ 
  CCG91903.1 627 LKNIDIAFPIGlFCCVTGVSGSGKSTLVND 656
                 455555555432899**********99875 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 4.1e-05
                 T.............CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEE CS
                 x.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e.............lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvg 210
                 +             +LSgGe + + la+ +  +k + + ly+lDe    L ++ +  + +ll++  ++   +ivi ++ ++++ ad ++ 
  CCG91903.1 818 KvglgylklgqpaiTLSGGEAQRLKLAVEL-QRKTEGRTLYILDEPTTGLHFADIDLLLKLLHNLVERgNTVIVIEHNLDVIKSADYVID 906
                 255555555555558*****9999999886.4678999*************************99988689*************998876 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.033        18       1      15 [.      29      43 ..      29      55 .. 0.95
   2 !   17.2   0.0   6.4e-06    0.0035     232     291 ..     487     545 ..     440     553 .. 0.83
   3 ?    0.4   0.0      0.83   4.5e+02       3      15 ..     641     653 ..     639     668 .. 0.90
   4 !   13.6   0.1   7.8e-05     0.043     238     298 ..     834     894 ..     825     899 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.033
      AAA_21  1 lnvliGpNgsGKSnL 15
                l+v++G  gsGKS+L
  CCG91903.1 29 LTVITGVSGSGKSSL 43
                79***********98 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 6.4e-06
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQ 291
                 + +  lS G  +  +l+t l   l    l+++DEp  gLHP+ +++l++ +k+l++ g  
  CCG91903.1 487 REIGTLSGGESQRVRLATQLSGELTG-LLYVLDEPSIGLHPRDTEKLIRTIKRLKDMGNT 545
                 44556699998888**********99.************************998874444 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.83
      AAA_21   3 vliGpNgsGKSnL 15 
                 +++G  gsGKS+L
  CCG91903.1 641 CVTGVSGSGKSTL 653
                 58999*******9 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 7.8e-05
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 S G  + l+l++ l r  + ++l+++DEp +gLH + +  ll+ll +l ++g  vi+  H+
  CCG91903.1 834 SGGEAQRLKLAVELQRKTEGRTLYILDEPTTGLHFADIDLLLKLLHNLVERGNTVIVIEHN 894
                 555555558888888888888************************6666669999987666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1     4e-05     0.022      22      90 ..      25      96 ..      14     214 .. 0.58
   2 !   14.4   0.0   6.8e-05     0.037      26      48 ..     639     661 ..     626     689 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4e-05
      AAA_16 22 grpelvllsGesGvGKsslv.rellralekdggif..lrgkcdql..esaipysalaqalareellrqlldeae 90
                + ++l++++G sG+GKssl+ ++l+  +e+++ +   l+   +q+  + + p + l++ l     ++q  ++a+
  CCG91903.1 25 PKGQLTVITGVSGSGKSSLAfDTLY--AEGQRRYMesLSVYSRQFleQLEKPEVELIEGLIPAVAVEQKTSAAS 96
                444899**************55555..44443333334444444422222332222222222222222222222 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 6.8e-05
      AAA_16  26 lvllsGesGvGKsslvrellral 48 
                  + ++G sG+GKs+lv+ +l  +
  CCG91903.1 639 FCCVTGVSGSGKSTLVNDVLAKI 661
                 688*************9998754 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.6e-05     0.025      18      38 ..      23      43 ..      12      55 .. 0.80
   2 !   14.1   0.0   5.2e-05     0.028      23      39 ..     637     654 ..     625     667 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.6e-05
      AAA_29 18 eidlkg.atlltGpsGsGKSTl 38
                +i  kg  t++tG sGsGKS+l
  CCG91903.1 23 NIP-KGqLTVITGVSGSGKSSL 43
                454.5669************98 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 5.2e-05
      AAA_29  23 g.atlltGpsGsGKSTll 39 
                 g ++ +tG sGsGKSTl+
  CCG91903.1 637 GlFCCVTGVSGSGKSTLV 654
                 446789***********9 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   0.00022      0.12      82     116 ..       9      44 ..       2      61 .. 0.82
   2 !   10.7   0.0   0.00066      0.36     102     122 ..     640     660 ..     621     692 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00022
                  --TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHH CS
  RsgA_GTPase  82 vsaktkegleelkellkd.ktsvlvGqSGvGKStLi 116
                  ++  ++++l++++ ++ + +++v+ G SG GKS+L 
   CCG91903.1   9 IKGAKQHNLKNISLNIPKgQLTVITGVSGSGKSSLA 44 
                  5566788999999888777***************95 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00066
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                  +++ G SG GKStL+n +l +
   CCG91903.1 640 CCVTGVSGSGKSTLVNDVLAK 660
                  6789************98876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00087      0.47       5      86 ..      27     139 ..      25     154 .. 0.72
   2 !   10.8   0.0   0.00082      0.44       7      28 ..     639     660 ..     637     685 .. 0.86
   3 ?   -1.4   0.0       4.7   2.5e+03      73     123 ..     836     887 ..     807     893 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00087
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee..............................erpevv..fvtlpsstsskdllrellralglelkae 71 
                  +++v+tG sG+GK+ l+   l+   ++ + e                               ++ + +  + tl+ st+  + l+ l+  lg++++  
  CCG91903.1  27 GQLTVITGVSGSGKSSLAFDTLYAEGQRRYMESlsvysrqfleqlekpevelieglipavaveQKTSAAspRSTLATSTNIYEYLKLLFAHLGEPHHP- 124
                 5789*************999888888888888888888888888888777777777777777544444466777777777777777777777777777. PP

      AAA_22  72 rlsseell.ealeqal 86 
                  l+ + l   ++e+ +
  CCG91903.1 125 -LTGKKLKkYTVEEIV 139
                 .666666644444444 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00082
      AAA_22   7 ilvvtGesGtGKTtllrrlleq 28 
                 +++vtG sG+GK+tl++ +l +
  CCG91903.1 639 FCCVTGVSGSGKSTLVNDVLAK 660
                 789*************998876 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 4.7
      AAA_22  73 lsseellealeqalraravielliiDEaqh.lrseealeeL.rsllnl.srkgv 123
                 ++ ++l  a+e + ++ ++  l i+DE    l + + +  L + l+nl +r ++
  CCG91903.1 836 GEAQRLKLAVELQRKTEGR-TLYILDEPTTgL-HFADIDLLlKLLHNLvERGNT 887
                 5556666666666666666.888888877767.533333331333333324444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.5   6.9e-05     0.037       2      35 ..       7      43 ..       7      45 .. 0.87
   2 !    9.5   0.1    0.0024       1.3       2      37 ..     617     655 ..     617     672 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.9e-05
      AAA_23  2 LkienfrsfrdqeidF...skgltlItGpNGaGKTTi 35
                ++i++ ++++ ++i +   +  lt+ItG  G+GK+++
  CCG91903.1  7 IRIKGAKQHNLKNISLnipKGQLTVITGVSGSGKSSL 43
                7999*****7777777668889*************98 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0024
      AAA_23   2 Lkienfrsf..rdqeidFskglt.lItGpNGaGKTTild 37 
                 +++ ++r++  ++ +i F  gl+ ++tG  G+GK+T+++
  CCG91903.1 617 IRLFGVRKHnlKNIDIAFPIGLFcCVTGVSGSGKSTLVN 655
                 6778999997777778887788868***********986 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00091      0.49       2      42 ..      28      66 ..      27      81 .. 0.76
   2 !    9.2   0.0    0.0012      0.64       4      27 ..     640     665 ..     638     676 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00091
     DUF2075  2 avvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhp 42
                ++ ++tGv+G+GK+ +++  l++    ++++ + + + +++
  CCG91903.1 28 QLTVITGVSGSGKSSLAFDTLYAE--GQRRYMESLSVYSRQ 66
                5789****************9997..555555555555555 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0012
     DUF2075   4 vlVtGvaGtGKtvvllnllael..ed 27 
                 + VtGv+G+GK+ + + +la++  ++
  CCG91903.1 640 CCVTGVSGSGKSTLVNDVLAKIflQQ 665
                 78******************996532 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00052      0.28      25      54 ..      19      48 ..       2      53 .. 0.79
   2 ?   -1.9   0.0       3.9   2.1e+03     164     191 ..     528     554 ..     521     555 .. 0.71
   3 ?    5.0   0.0     0.029        16      31      58 ..     635     662 ..     616     676 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00052
      AAA_25 25 lvkgllpagelallaGapgtGKttlaldla 54
                 +   +p+g l++++G +g+GK+ la d  
  CCG91903.1 19 NISLNIPKGQLTVITGVSGSGKSSLAFDTL 48
                555568********************9876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.9
      AAA_25 164 dvgalvealeriarrtgaavllvhHvgK 191
                 d+++l+  ++r+ +  g +v++v H  K
  CCG91903.1 528 DTEKLIRTIKRL-KDMGNTVVVVEHDEK 554
                 556677777777.677778888888666 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.029
      AAA_25  31 pagelallaGapgtGKttlaldlalava 58 
                 p g ++ ++G +g+GK+tl+ d+ +++ 
  CCG91903.1 635 PIGLFCCVTGVSGSGKSTLVNDVLAKIF 662
                 55778999************99998876 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3      0.12        65      14      39 ..      17      43 ..       7      49 .. 0.88
   2 !    8.9   0.0    0.0019       1.1     325     356 ..     513     544 ..     499     553 .. 0.85
   3 ?   -1.4   0.1       2.7   1.5e+03      15      50 ..     628     666 ..     626     699 .. 0.67
   4 ?    5.1   0.0     0.029        16     319     365 ..     849     894 ..     791     898 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.12
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsi 39
                lk++++++ +  ltv+ G  +sGKSs+
  CCG91903.1 17 LKNISLNIPKGqLTVITGVSGSGKSSL 43
                678888887778**************8 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0019
      AAA_15 325 villiEEPEahLHpqaqkvlikllkelandnk 356
                  +++++EP + LHp   + li+++k+l + ++
  CCG91903.1 513 LLYVLDEPSIGLHPRDTEKLIRTIKRLKDMGN 544
                 699**********************9988776 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.7
      AAA_15  15 kdveidlsee.ltvliGkNnsGKSsile.al.dlFlnnk 50 
                 k+++i +    + ++ G  +sGKS++++ +l ++Fl+++
  CCG91903.1 628 KNIDIAFPIGlFCCVTGVSGSGKSTLVNdVLaKIFLQQS 666
                 6666666555577889999******98633325666665 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.029
      AAA_15 319 ekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                 +k e   +++++EP + LH      l kll +l++ ++  vi+  H+
  CCG91903.1 849 RKTEGRTLYILDEPTTGLHFADIDLLLKLLHNLVERGN-TVIVIEHN 894
                 33444789*****************************9.67766666 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.022        12       2      15 ..      31      44 ..      31      66 .. 0.93
   2 !    9.8   0.0     0.002       1.1       2      18 ..     641     657 ..     640     690 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.022
      AAA_18  2 lltGtpGvGKttla 15
                ++tG++G+GK++la
  CCG91903.1 31 VITGVSGSGKSSLA 44
                59**********98 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.002
      AAA_18   2 lltGtpGvGKttlakeL 18 
                 ++tG++G+GK+tl + +
  CCG91903.1 641 CVTGVSGSGKSTLVNDV 657
                 89**********98766 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0      0.02        11       1      19 [.      30      48 ..      30      91 .. 0.74
   2 !   10.3   0.0   0.00076      0.41       2      24 ..     641     661 ..     640     680 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.02
  Viral_helicase1  1 ivvhGvpGcGKStlirkll 19
                     +v+ Gv G+GKS+l  + l
       CCG91903.1 30 TVITGVSGSGKSSLAFDTL 48
                     69**********9866655 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00076
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtsli 24 
                       v Gv G+GKStl+ ++l +  i
       CCG91903.1 641 CVTGVSGSGKSTLVNDVLAK--I 661
                      599*************9988..3 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.021        12       1      23 [.      29      51 ..      29     119 .. 0.76
   2 !    9.0   0.0    0.0027       1.4       4      22 ..     642     660 ..     640     684 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.021
      AAA_33  1 lvllvGlpGsGKstlaerllkkl 23
                l+++ G++GsGKs la   l ++
  CCG91903.1 29 LTVITGVSGSGKSSLAFDTLYAE 51
                57889*********996655554 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0027
      AAA_33   4 lvGlpGsGKstlaerllkk 22 
                 + G++GsGKstl+  +l+k
  CCG91903.1 642 VTGVSGSGKSTLVNDVLAK 660
                 67***********998865 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.34   1.9e+02      16      24 ..     280     288 ..     272     296 .. 0.71
   2 ?    1.8   0.0      0.56     3e+02      60      66 ..     406     412 ..     394     419 .. 0.64
   3 !   12.5   0.2   0.00027      0.14      16      50 ..     742     772 ..     733     778 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.34
  DnaJ_CXXCXGXG  16 tCktCkGsG 24 
                     C++C+G G
     CCG91903.1 280 ACPKCQGLG 288
                    466666666 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.56
  DnaJ_CXXCXGXG  60 CkkCkGk 66 
                    Ck+C+G+
     CCG91903.1 406 CKACNGQ 412
                    3333333 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00027
  DnaJ_CXXCXGXG  16 tCktCkGsGvvreeqktlgp.fvqqsqstCpeCeGt 50 
                    +C++C+G+G +++e+  + p ++      C++C+G+
     CCG91903.1 742 RCERCRGEGLIEVEMA-FLPpIF----VVCEACQGK 772
                    6********6555553.444344....69*****98 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.019        11       2      23 ..      29      50 ..      28      68 .. 0.80
   2 !    9.7   0.1    0.0011      0.61       4      22 ..     641     659 ..     638     673 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.019
                EEEEEESTTCCHHHHHHHHHCT CS
        cobW  2 vtvltGflGsGKTtLlnhllen 23
                 tv+tG  GsGK++L   +l  
  CCG91903.1 29 LTVITGVSGSGKSSLAFDTLYA 50
                59*************8888733 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0011
                 EEEESTTCCHHHHHHHHHC CS
        cobW   4 vltGflGsGKTtLlnhlle 22 
                  +tG  GsGK+tL+n +l+
  CCG91903.1 641 CVTGVSGSGKSTLVNDVLA 659
                 79**************993 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.025        13       2      18 ..      29      45 ..      28     123 .. 0.83
   2 !    9.5   0.0    0.0016      0.84       3      23 ..     640     660 ..     638     672 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.025
                CEEEEC-TTTCHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlq 18
                l +++G +GsGK+ L+ 
  CCG91903.1 29 LTVITGVSGSGKSSLAF 45
                679***********985 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0016
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 ++++G +GsGK+tL+  +  +
  CCG91903.1 640 CCVTGVSGSGKSTLVNDVLAK 660
                 79*************988766 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.011       6.1       4      21 ..      29      46 ..      26      60 .. 0.78
   2 !    8.0   0.0    0.0044       2.4       5      29 ..     640     664 ..     636     676 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                EEEEESSTTSSHHHHHHH CS
  APS_kinase  4 vvwltGlsgsGKstiana 21
                   +tG+sgsGKs++a+ 
  CCG91903.1 29 LTVITGVSGSGKSSLAFD 46
                5679***********974 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0044
                 EEEESSTTSSHHHHHHHHHHHHHHT CS
  APS_kinase   5 vwltGlsgsGKstianalekkLvek 29 
                   +tG+sgsGKst+ n +  k++ +
  CCG91903.1 640 CCVTGVSGSGKSTLVNDVLAKIFLQ 664
                 568***********99887776544 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1      0.05        27       5      20 ..      30      45 ..      26      54 .. 0.86
   2 ?    2.5   0.0      0.19     1e+02     109     134 ..     530     555 ..     527     561 .. 0.85
   3 ?    6.4   0.0     0.012       6.5       5      22 ..     640     657 ..     637     674 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.05
      AAA_24  5 iliyGpsgiGKTtlak 20
                 +i+G sg+GK++la 
  CCG91903.1 30 TVITGVSGSGKSSLAF 45
                68***********996 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.19
      AAA_24 109 eefrrllkklqelrknvifiahektr 134
                 e+++r++k+l++++++v+++ h ++ 
  CCG91903.1 530 EKLIRTIKRLKDMGNTVVVVEHDEKS 555
                 678899999999999*****998775 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.012
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 ++++G sg+GK+tl++  
  CCG91903.1 640 CCVTGVSGSGKSTLVNDV 657
                 79************9876 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00092       0.5      16      41 ..      24      49 ..      16      64 .. 0.85
   2 ?    3.8   0.0     0.059        32      16      37 ..     634     655 ..     628     666 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00092
      ATPase 16 ipegrvvlitGepGtGKtifalqFli 41
                ip+g+ + itG++G+GK+ +a   l+
  CCG91903.1 24 IPKGQLTVITGVSGSGKSSLAFDTLY 49
                8*****************99976666 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.059
      ATPase  16 ipegrvvlitGepGtGKtifal 37 
                 +p g    +tG++G+GK++++ 
  CCG91903.1 634 FPIGLFCCVTGVSGSGKSTLVN 655
                 56667788**********9976 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.023        13       3      30 ..      28      54 ..      26      91 .. 0.74
   2 ?    6.5   0.0     0.015       8.2       5      27 ..     640     662 ..     637     677 .. 0.83
   3 ?   -1.3   0.0       3.8     2e+03      64      75 ..     853     864 ..     835     939 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.023
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkk 30
                ++ vitG+  +GK+ l+++ ++ +  ++
  CCG91903.1 28 QLTVITGVSGSGKSSLAFDTLYAEG-QR 54
                6789*************99987766.33 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.015
      AAA_14   5 lvitGaRrvGKTtllkqlikell 27 
                 +++tG+  +GK+tl+++++ + +
  CCG91903.1 640 CCVTGVSGSGKSTLVNDVLAKIF 662
                 689*************9998766 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.8
      AAA_14  64 kktylflDEiqe 75 
                 ++t+ +lDE   
  CCG91903.1 853 GRTLYILDEPTT 864
                 555555555332 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.87   4.7e+02       3      15 ..      31      43 ..      30      54 .. 0.90
   2 ?   -1.2   0.0       3.8   2.1e+03      48      87 ..     514     553 ..     483     565 .. 0.62
   3 ?   11.0   0.0   0.00064      0.35       2      37 ..     640     676 ..     639     702 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.87
                EEEESTTSSHHHH CS
    MMR_HSR1  3 aivGrpNvGKStL 15
                +i G + +GKS+L
  CCG91903.1 31 VITGVSGSGKSSL 43
                699*********9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.8
                 EEEEECGGCSS.HHHHHHHHHHHHHHHHCTSEEEEEEETTT CS
    MMR_HSR1  48 ielvDtpGlie.gaseekglgkaflaleeadlillvvdase 87 
                 ++++D p  i    ++ ++l +++++l+++   ++vv+  e
  CCG91903.1 514 LYVLDEPS-IGlHPRDTEKLIRTIKRLKDMGNTVVVVEHDE 553
                 56667666.43234445578888888888777777776443 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00064
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdin 37 
                 +++ G + +GKStL+n  + +   + s+ p t +d  
  CCG91903.1 640 CCVTGVSGSGKSTLVNDVLAKiFLQQSNDPKTGLDLC 676
                 6899***************995568899998887764 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.073        39      18      34 ..      27      43 ..      18      53 .. 0.88
   2 ?   -0.9   0.0       2.1   1.1e+03      64     122 ..     476     549 ..     451     556 .. 0.62
   3 ?    6.1   0.0     0.015       7.9      20      40 ..     639     660 ..     636     685 .. 0.81
   4 ?   -1.2   0.0       2.7   1.4e+03      84     121 ..     849     890 ..     826     892 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.073
      AAA_30 18 drvavltGpAGtGKtta 34
                 +++v+tG+ G+GK+ +
  CCG91903.1 27 GQLTVITGVSGSGKSSL 43
                4699**********975 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.1
      AAA_30  64 eelgieastiakllkrlk...............grarlepgtllivDEagmv....dtkqlaallkaaekagakvilv 122
                 eelg+   t+++ + +l                +     +g l++ DE +      dt++l + +k++++ g +v++v
  CCG91903.1 476 EELGLGYLTLNREIGTLSggesqrvrlatqlsgE----LTGLLYVLDEPSIGlhprDTEKLIRTIKRLKDMGNTVVVV 549
                 4555555555555555556666666655322211....2347899999988777778888888888888888888876 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.015
      AAA_30  20 vavltGpAGtGKttalkal.re 40 
                 ++++tG+ G+GK+t+++ + ++
  CCG91903.1 639 FCCVTGVSGSGKSTLVNDVlAK 660
                 6789***********9987444 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 2.7
      AAA_30  84 arlepgtllivDEagmv....dtkqlaallkaaekagakvil 121
                  + e +tl+i DE        d++ l +ll  + ++g +vi+
  CCG91903.1 849 RKTEGRTLYILDEPTTGlhfaDIDLLLKLLHNLVERGNTVIV 890
                 334556999***965433344888888888888777877776 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.19     1e+02       2      17 ..      31      46 ..      30      71 .. 0.68
   2 ?    9.3   0.0    0.0026       1.4       2      30 ..     641     670 ..     640     676 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.19
  RNA_helicase  2 wlyGpsgeGKStlake 17
                  +++G sg GKS+la +
    CCG91903.1 31 VITGVSGSGKSSLAFD 46
                  689**********987 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0026
  RNA_helicase   2 wlyGpsgeGKStlake.Lakallkklklkk 30 
                   +++G sg GKStl+++ Lak +l++++++k
    CCG91903.1 641 CVTGVSGSGKSTLVNDvLAKIFLQQSNDPK 670
                   799************966777777776665 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.16        88     122     147 ..      20      45 ..       5      55 .. 0.73
   2 ?   -0.9   0.0       1.3     7e+02     234     267 ..     530     563 ..     524     567 .. 0.71
   3 ?    6.8   0.0    0.0055         3     133     153 ..     641     661 ..     625     667 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.16
       T2SSE 122 lrkavrerglilvsGgTgsGKttlly 147
                 ++  + + +l +++G  gsGK+ l+ 
  CCG91903.1  20 ISLNIPKGQLTVITGVSGSGKSSLAF 45 
                 455555777889**********8874 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
       T2SSE 234 nsaagalerLeqlgae.veaaelkssilavvdivv 267
                 ++ + +++rL+++g++ v  ++ ++si+++ d +v
  CCG91903.1 530 EKLIRTIKRLKDMGNTvVVVEHDEKSIREA-DYIV 563
                 556789********8865555556667666.5555 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0055
       T2SSE 133 lvsGgTgsGKttllyallkei 153
                  v+G  gsGK+tl++ +l++i
  CCG91903.1 641 CVTGVSGSGKSTLVNDVLAKI 661
                 59*************999887 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.28   1.5e+02       4      16 ..      32      44 ..      29      87 .. 0.90
   2 ?    6.6   0.0     0.011         6       3      31 ..     641     670 ..     639     695 .. 0.79
   3 ?    0.2   0.0      0.95   5.2e+02     152     186 ..     781     815 ..     762     820 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.28
         PRK  4 vagsSGaGkttva 16
                ++g SG+Gk+++a
  CCG91903.1 32 ITGVSGSGKSSLA 44
                89********986 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.011
         PRK   3 gvagsSGaGktt.varklekifgrekvkaa 31 
                  v+g SG+Gk+t v   l kif +++  ++
  CCG91903.1 641 CVTGVSGSGKSTlVNDVLAKIFLQQSNDPK 670
                 69*********9445668899987766655 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.95
         PRK 152 iaeRGrsleavldsilrrkpdyvnyikpqfseadl 186
                 +++RG+++ +vld       d+ + i p f++ ++
  CCG91903.1 781 VTYRGKNIADVLDMTIEEGCDFFKNIPPLFEKLEM 815
                 689***********************999987665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.9   4.9e+02       3      16 ..      31      44 ..      30      51 .. 0.87
   2 ?   -1.1   0.0       2.9   1.6e+03     131     159 ..     524     552 ..     503     563 .. 0.59
   3 ?    9.5   0.1    0.0016      0.85       3      23 ..     641     661 ..     640     673 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.9
                EEE--TTSSHHHHH CS
    NTPase_1  3 fiTGppGvGKtTlv 16
                +iTG +G+GK+ l 
  CCG91903.1 31 VITGVSGSGKSSLA 44
                79*********986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.9
                 E--SS--SHHHHHHHT-TT.-EEEE--TTT CS
    NTPase_1 131 vihrrkdlalveeirerkd.vkvfevteen 159
                   h r++++l+++i++ kd ++++ v e++
  CCG91903.1 524 L-HPRDTEKLIRTIKRLKDmGNTVVVVEHD 552
                 3.3333667777777777753333333333 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0016
                 EEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlell 23 
                 ++TG +G+GK+Tlv+ vl ++
  CCG91903.1 641 CVTGVSGSGKSTLVNDVLAKI 661
                 69***************9886 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.074        40      29      63 ..      23      57 ..      16      70 .. 0.77
   2 ?   -0.4   0.0       1.3   6.9e+02      61      99 ..     132     170 ..     125     174 .. 0.81
   3 ?    5.2   0.0     0.025        13      36      57 ..     640     661 ..     631     669 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.074
       AAA_7 29 llknkkpvllvGptGtGKtviikdllkkldkekyl 63
                 + +++ ++++G +G+GK++++ d+l +  +++y+
  CCG91903.1 23 NIPKGQLTVITGVSGSGKSSLAFDTLYAEGQRRYM 57
                5667788999***********99977666656665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.3
       AAA_7  61 kylsltinfsaqtsanqlqdiiesklekrrkgvygPpgg 99 
                 ky++  i    +  ++q+  ++ ++l k++kg++ P  +
  CCG91903.1 132 KYTVEEIVARLMALPQQTPVMLLAPLIKKEKGNFIPLLE 170
                 66777777777778899999***************9765 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.025
       AAA_7  36 vllvGptGtGKtviikdllkkl 57 
                 ++++G +G+GK+++++d+l k+
  CCG91903.1 640 CCVTGVSGSGKSTLVNDVLAKI 661
                 5789*************88775 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0       0.2   1.1e+02      19      45 ..      17      43 ..       5      55 .. 0.77
   2 ?    7.3   0.0    0.0036         2      33      52 ..     641     660 ..     635     667 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.2
                HHHHGGG-S-SEEEEEEE-TTSSHHHH CS
        MeaB 19 lerllakaGraqvvGltGvPGaGkstl 45
                l++++ +  + q   +tGv G+Gks l
  CCG91903.1 17 LKNISLNIPKGQLTVITGVSGSGKSSL 43
                5666666667777889*********87 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0036
                 EEEE-TTSSHHHHHHHHHHH CS
        MeaB  33 GltGvPGaGkstlvealgle 52 
                  +tGv G+Gkstlv+ + ++
  CCG91903.1 641 CVTGVSGSGKSTLVNDVLAK 660
                 59************988765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.72   3.9e+02      23      38 ..      30      45 ..      20      59 .. 0.83
   2 ?    6.7   0.0    0.0066       3.6      22      43 ..     639     660 ..     633     687 .. 0.88
   3 ?   -1.5   0.0       2.1   1.1e+03      90     146 ..     872     930 ..     855     934 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.72
                EEEEESTTSSHHHHHH CS
      NB-ARC 23 valvGmgGvGKttlak 38
                  + G  G+GK+ la 
  CCG91903.1 30 TVITGVSGSGKSSLAF 45
                5689*********985 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0066
                 EEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnk 43 
                 +  + G  G+GK+tl++++l k
  CCG91903.1 639 FCCVTGVSGSGKSTLVNDVLAK 660
                 66799*************9988 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.1
                 TSHHHHHHHHCCCTTEEEEEE...EE-SHHHH.....HHHHCHTTSEEEEEESBCCCCCC CS
      NB-ARC  90 eslkrklvrlLltkrfllvlD...DVweeedwdkigvvlparenrlrvllTTRdeevana 146
                 + l + l++l ++ ++++v+    DV ++ d+  i +     e++ +v+ T   eeva +
  CCG91903.1 872 DLLLKLLHNLVERGNTVIVIEhnlDVIKSADY-VIDLGPEGGEKGGEVVATGSPEEVARE 930
                 43566688888888*****9888899999998.788888888888888888888888765 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1    0.0012      0.65       2      32 ..     641     671 ..     640     673 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0012
                 EEEEBTTTTHHHHHHHHHTS--S---SSS-- CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpnptT 32 
                 +v G   sGKS+++n +l + +l  ++ p T
  CCG91903.1 641 CVTGVSGSGKSTLVNDVLAKIFLQQSNDPKT 671
                 58999*******************9999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.50
# Mc/sec: 5674.58
//
Query:       CCG91904.1  [L=257]
Description: rRNA methylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-19   71.2   0.0    1.4e-19   70.9   0.0    1.1  1  FtsJ             FtsJ-like methyltransferase
    1.4e-08   34.4   0.3    4.1e-08   32.8   0.3    1.8  1  S4               S4 domain
     0.0033   18.0   0.0      0.005   17.5   0.0    1.3  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.019   15.7   0.0      0.029   15.1   0.0    1.3  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0     3e-23   1.4e-19       1     172 [.      61     241 ..      61     246 .. 0.90

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 3e-23
                 CCCCHHHHHHHHHHHHT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS....HHH..TTEEEE.CS-CCCSSHHHHHCHCHHHSSEEEEE CS
        FtsJ   1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm....apl..pgvtti.qgditdpetiekikealserkvdlvv 92 
                 y+sR++yKL+ + + f+l  +gk ++D+g+++Gg+ ++llq+ ga   v+ vD++++    + +  p+v+++  ++ +  ++++  ++      +d+++
  CCG91904.1  61 YVSRGGYKLEVLFHSFHLHVEGKICLDVGSSTGGFVDCLLQH-GA-RTVYCVDVGKGllhwKIRsdPRVKIMeGMNARYLKKEDFSNQ-----LFDVIT 152
                 99***************555**********************.88.99*********8887444679*****9999999999996665.....49**** PP

                 E--S-SS-CHHHHHHHHH........CCCCHHHHCCHCCCCECCCEEEECCCHCCCHHHHHHHHHCCE..EEEEEEE-SS--CCG-EEEE CS
        FtsJ  93 sDgapdvsgvhdldeylq........sqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfF..ekvsvvkPkssrsesseefl 172
                  D++ ++s++  l+++          + L+++++e + k ++++g++  + +r++ +++l+  l + F  ++  v+ +++ ++e+++e+l
  CCG91904.1 153 VDVS-FISLKLILPALFPlltpnglvCALIKPQFEAGKKEVGKKGVIRDEGIRNRVIKDLELWLTANFpmKTAAVIPSPILGQEGNQEYL 241
                 ****.*****99999999999****99********************************9999999984456778888899999999887 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.3     9e-12   4.1e-08       1      30 [.       4      33 ..       4      33 .. 0.96

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 9e-12
                EEHHHHHHHTTSSSSHHHHHHHHHTTTEEE CS
          S4  1 rRLdkvlarlglassrreArqlIehGrVlV 30
                +RLd+ l+r+g+assr eA++lI +G+V +
  CCG91904.1  4 ERLDQQLVRKGMASSREEAKRLILAGKVSI 33
                6***************************86 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.1e-06     0.005       1      74 [.      86     160 ..      86     179 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.1e-06
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-TT-EEEEEEES-CCC- CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaekl.pfednsfDlvvssevlhhv 74 
                      LdvG+ tG ++  l ++g ++v++vD+ k +l +  +  ++ ++ +e + a+  k   f ++ fD++++  ++  +
       CCG91904.1  86 LDVGSSTGGFVDCLLQHGaRTVYCVDVGKGLLHWKIRSDPRVKI-MEGMNARYLKKeDFSNQLFDVITVDVSFISL 160
                      8*******************************766555555554.333444444433699999***9998777665 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   6.5e-06     0.029       2      91 ..      86     169 ..      85     175 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.5e-06
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEE.SBCCGBS...SSTTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvq.gdaedlp...fedgsfDlvvssgalhhlsdedlekalkeiar 91 
                      Ld+G  tG ++  l+++ g+ +v++vD+ +++l    +      ++v++++ ++a+ l+   f ++ fD++++   ++++s   l+ +l  ++ 
       CCG91904.1  86 LDVGSSTGGFVDCLLQH-GARTVYCVDVGKGLLHWKIRSD----PRVKIMEgMNARYLKkedFSNQLFDVITVD--VSFIS---LKLILPALFP 169
                      9****************.69************98655444....788886634555565444888899999883..33333...3445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1733.54
//
Query:       CCG91905.1  [L=432]
Description: Amino acid transporter [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-49  169.2  42.6    1.6e-49  168.9  42.6    1.0  1  AA_permease_2  Amino acid permease
    1.5e-31  109.6  38.1    1.9e-31  109.2  38.1    1.2  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9  42.6   1.8e-53   1.6e-49       1     397 [.       7     393 ..       7     424 .. 0.85

  Alignments for each domain:
  == domain 1  score: 168.9 bits;  conditional E-value: 1.8e-53
  AA_permease_2   1 lsllsafalvigsvigsgifvkn.....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfn.wfayvp 90 
                    +s l+a+ +vi  +ig+g+f +       +  + p +il +wi  +i+ l+++l yaEl++ + rsgG+y ++++++++ v+fl++w++ ++++++
     CCG91905.1   7 ISALTAISIVIANMIGTGVFTTLgfqvkEI--ASPFIILCIWILGGIVALSGALSYAELGAIFQRSGGEYLFLSKIYHPMVGFLAGWLSvTVGFAA 100
                    6889****************9987753333..6666777777777777789********999***************************6566666 PP

  AA_permease_2  91 vlasilsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpng 186
                      a+++ ++++y+ +++ p + +     ++i +++ +lv ++++r+ ++ + +qni +++ i+ +++++i+ g+  + +   ++l+         +
     CCG91905.1 101 PSAATAMALGKYFHYVF-PMISP-----LWISCCVAVLVYALHLRSLRWESIFQNIFILIEIF-LILFFIVSGIGHIERPKLNFLPKPE-DLAVFF 188
                    56677788999999966.87755.....99********************************5.999*********9776665442332.456669 PP

  AA_permease_2 187 wpgvllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvili 280
                    +p ++l +  +++s++G+++aa+++ e  ++kk++p+a+++g  iv+v+y+++n  f++ vp d+i    + ++v+a+++++v+g ++++++ +li
     CCG91905.1 189 SPPFALCFIYTMYSYSGWNAAAYIAGEieNPKKNIPLALILGTTIVVVIYTFLNAIFIFSVPRDQILG--Q-IEVGAIVARKVFGEWGSRFAGFLI 281
                    9999***********************666679*********************************95..3.5589******************** PP

  AA_permease_2 281 alsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkr 376
                     +sl+ ++ +   + +rv+ a+++d  + r ++k +k g p++++ l+a++   ++llf    s+++  + ++  ++l +s  ++++g+++lr+k 
     CCG91905.1 282 GVSLVSSLSAMAWTGPRVAAAIGEDYPFFRILSKRSKEGVPYVGLLLQALIM--FCLLF----SSSFAKIITYVEFALGLSTVVTVLGVFVLRVKA 371
                    *************************9999**********************6..44555....46899999999********************** PP

  AA_permease_2 377 phlkrpgk...ilvaiigalfllf 397
                    p+lkr++    ++++   +l++++
     CCG91905.1 372 PELKRFYStwgYPLT--PLLYVII 393
                    *****6654332222..2222222 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2  38.1   2.2e-35   1.9e-31       3     423 ..      13     395 ..      11     423 .. 0.81

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 2.2e-35
  AA_permease   3 lvialggviGtglfvglgvvlsq.aGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitv.laleltaas 98 
                  + i ++++iGtg+f+ lg+ + + a+p  +l +++l+g+v +  +ls +e+  ++ +sgg y + s+  +p +Gf  G++ + +++++  a+  +a++
   CCG91905.1  13 ISIVIANMIGTGVFTTLGFQVKEiASPFIILCIWILGGIVALSGALSYAELGAIFQRSGGEYLFLSKIYHPMVGFLAGWLSVTVGFAApSAATAMALG 110
                  7899*****************9945677779999**********************************************555544431566667888 PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeeg 196
                   +++++  ++ ++ +w+  +v  v++ +++l +++++  ++ i++li i  i+ fi+ g i++++  + ++     l ++ + ++ +++p        
   CCG91905.1 111 KYFHYV--FPMISPLWISCCV-AVLVYALHLRSLRWESIFQNIFILIEIFLILFFIVSG-IGHIERPKLNF-----LPKPED-LAVFFSPP------- 191
                  999999..****988887766.5677899*******************99998888888.56665555555.....777777.78888888....... PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplina 294
                      f+ +f+  + +++G  + a+iagE+++P+k+iP a +    +++++Y+++ ++ ++ vpr+   +l ++ ++a     ++ e g+++++    +
   CCG91905.1 192 ----FALCFIYTMYSYSGWNAAAYIAGEIENPKKNIPLALILGTTIVVVIYTFLNAIFIFSVPRDQ--ILGQIEVGAIVARKVFGEWGSRFAG----F 279
                  ....**************************************************999999999998..6665665522233444455555555....5 PP

  AA_permease 295 viltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRk 392
                  +i ++++ss++++  +++Rv  +  +d  + ++l+k sk+gvP++++ll ++i + +l+ +s++ + +   +f+l +s++++++   +  ++ + +++
   CCG91905.1 280 LIGVSLVSSLSAMAWTGPRVAAAIGEDYPFFRILSKRSKEGVPYVGLLLQALIMFCLLFSSSFAKIIT-YVEFALGLSTVVTVLGVFVLRVKAPELKR 376
                  567899**************99999998888***************************9999999944.44566666666666555555555554443 PP

  AA_permease 393 alkyqgrsieelgfkaallplgvilvlaali 423
                               + ++++pl++ l +++ +
   CCG91905.1 377 F------------YSTWGYPLTPLLYVIIES 395
                  3............444555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2969.95
//
Query:       CCG91906.1  [L=441]
Description: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-91  305.4   0.0    5.4e-91  305.2   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
    1.3e-05   24.5   0.0    2.1e-05   23.9   0.0    1.2  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.2   0.0   6.1e-95   5.4e-91       8     404 ..      16     435 ..       9     437 .. 0.94

  Alignments for each domain:
  == domain 1  score: 305.2 bits;  conditional E-value: 6.1e-95
                  -SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHH CS
  Aminotran_3   8 nlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlK 105
                     l+i++a+G yl+ ++gk+++D++s+  vvn+G   ++++ +++eq++kl ++  ++  +e ++ l++kl + +p +  ++ + + G+e+ve+A++
   CCG91906.1  16 TPSLIIERAQGIYLYTKEGKEIIDAASGAVVVNIGQGREEIATIAQEQIKKLDYIV-PIWLSEALEGLVKKLSEWFPTEPYRFYFTTGGAESVEAAFR 112
                  44599*************************************************99.*********************888***************** PP

                  HHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHH....CHTCCCEEEEEE- CS
  Aminotran_3 106 larkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleeleale....kkkkdevaAvivE 199
                  +a+ y+++++++ k+ki++   ++HG tlgals++g+    ++ +++ l + ++++ p++++++  +   ++ + +++ale     k  + +aA+i E
   CCG91906.1 113 FAFLYQIAENKPWKNKILSRWTSYHGITLGALSASGN-RLRREHLEHCLLDWPKIPPPYCYRCPWSKTYPSCGIACAQALEevlhSKTGNSIAAFIAE 209
                  *************************************.999**************************98888777777777666888999******** PP

                  S.CETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTS...B--TTT CS
  Aminotran_3 200 p.iqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgs...hgsTfg 292
                  p i + gG +v+ +e+  +++++ckkh+ llivDEv+tGfGrTGk fA eh+ ++pD++++aK+l+gG +p+   ++++e++q+ ++        T++
   CCG91906.1 210 PiIGASGGAIVPVEEYWPAIADICKKHGLLLIVDEVMTGFGRTGKRFAFEHWKLQPDIIVSAKGLSGGyIPMGMLAVREELVQRCEKVAknfMFFTYT 307
                  *6666799************************************************************99*************998777677789*** PP

                  T-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.........HHHHHHHHHCTEE-EEETT.. CS
  Aminotran_3 293 GnplacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.........keilkkakekGvlilsaGd.. 379
                    pl ca+a +v++i+e e+l+++  ++g+ l + L++  +++ +++e+RgkGl+ ++e+++++ +ke         +++l ka+e Gv ++++    
   CCG91906.1 308 SHPLSCAIAKKVIDILEAENLIDHSMKMGELLGQSLKNELANHPFVGEIRGKGLFWGVEFVKSKITKEpfppeegflNRLLRKALELGVFFYPCQGma 405
                  ***************************************9999**********************999*********99**************96557 PP

                  .....TEEEE---TT--HHHHHHHHHHHHH CS
  Aminotran_3 380 .....nvirllppliitdeeidelleilkk 404
                       +++ + ppli+++ +i +++  lk+
   CCG91906.1 406 dgfsgEAVLVCPPLIVKEGDILKIVAVLKE 435
                  788889************999998887765 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   2.3e-09   2.1e-05     134     266 ..     190     317 ..     173     353 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.3e-09
                    HHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHH.HHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG CS
  Aminotran_1_2 134 aleealkeapegnkktkvilvesphNPtGtvatlee.leklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGe 228
                    alee l + + +++   +i+   +    G++ + ee + +++d++kk++lll+vDe+  gf  + ++++  + ++++++  + + +ls  +  +G 
     CCG91906.1 190 ALEEVLHSKTGNSI-AAFIAEPIIGASGGAIVPVEEyWPAIADICKKHGLLLIVDEVMTGFGRTGKRFAFEHWKLQPDII-VSAKGLSGGYIPMG- 282
                    56666666555555.444444444555566555554499*************************9987665788887655.66666666665555. PP

                    -EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHH CS
  Aminotran_1_2 229 RvGyilgnaavvsqlrklsrpflsssllqaavaaalsd 266
                       ++++ +++v+  +k++ +f + +++++ ++ a+ +
     CCG91906.1 283 ---MLAVREELVQRCEKVAKNFMFFTYTSHPLSCAIAK 317
                    ...*********************66666555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2792.78
//
Query:       CCG91907.1  [L=224]
Description: Predicted phosphoribosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-08   33.6   0.0    3.1e-08   33.5   0.0    1.1  1  DLH            Dienelactone hydrolase family
    3.4e-07   29.8   0.0      0.056   12.7   0.0    3.0  3  Hydrolase_4    Serine aminopeptidase, S33
    3.3e-06   26.9   0.0     0.0086   15.8   0.0    2.3  2  Abhydrolase_1  alpha/beta hydrolase fold
    2.4e-05   23.9   0.1       0.19   11.2   0.1    2.4  3  Peptidase_S9   Prolyl oligopeptidase family
    0.00011   22.2   0.0     0.0013   18.7   0.0    1.9  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
    0.00018   22.2   0.0       0.15   12.6   0.0    2.1  2  Abhydrolase_6  Alpha/beta hydrolase family
     0.0079   15.8   0.0       0.68    9.5   0.0    2.1  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
  ------ inclusion threshold ------
       0.02   13.6   0.0       0.12   11.1   0.0    1.9  2  AXE1           Acetyl xylan esterase (AXE1)
       0.18   10.4   0.0       0.25   10.0   0.0    1.1  1  PhoPQ_related  PhoPQ-activated pathogenicity-related protein


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.5e-11   3.1e-08      81     204 ..      92     211 ..      23     217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.5e-11
         DLH  81 dlkaavaylksvpevstkkvgvvGfCmGGalalllaaev.pevdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealkaanvdle 178
                 +l  a ++lk ++++ +  +g  G   GG  al+ aae  ++++a+v+  G +p+   e  +k+k p l ++g  Def+   +    e+al+a + + e
  CCG91907.1  92 RLVGAAHWLKIQKQTRNYPIGFFGSSTGGGAALVAAAELgDKIKAVVSRGG-RPDLAGESLKKVKSPTLLIVGSLDEFVLRLN----EQALEALQCKKE 185
                 55567789999999999*********************99********999.***************************8775....8888899***** PP

         DLH 179 lkvYpgagHaFandsresyneeaaed 204
                 l++ pga H F ++ + + +++ a+d
  CCG91907.1 186 LVIIPGASHLFEEPGALNKVAAVAAD 211
                 ***********999888777766665 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.044        88       2      38 ..      28      66 ..      27      68 .. 0.82
   2 !   11.1   0.1   8.8e-05      0.17      66     105 ..      99     138 ..      94     142 .. 0.90
   3 !   12.7   0.0   2.8e-05     0.056     186     233 ..     150     195 ..     145     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.044
  Hydrolase_4  2 epkavvvlvHGlaeh..sgryaelaeaLaaqGfavyalD 38
                 e++++v+++HG +++  s r + +a+ L ++G  ++ +D
   CCG91907.1 28 EARGIVLFAHGSGSSrfSPRNQFVAKVLREKGSGTLLFD 66
                 789********9986547888889999999998888887 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8.8e-05
  Hydrolase_4  66 vekvkeehpelplfllGhSmGGliallyllrypdkvagli 105
                  + k++++ ++ p+  +G S+GG  al ++++  dk+++++
   CCG91907.1  99 WLKIQKQTRNYPIGFFGSSTGGGAALVAAAELGDKIKAVV 138
                  56899999*************************9999998 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 2.8e-05
  Hydrolase_4 186 raakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHe 233
                  + +k++ P+ll+ G+ D+ v  +  ++++e+l+  +k+l ++pg+ H 
   CCG91907.1 150 SLKKVKSPTLLIVGSLDEFVL-RLNEQALEALQC-KKELVIIPGASHL 195
                  678999***************.666788888986.9***********4 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.3e-06    0.0086       3     106 ..      33     142 ..      31     150 .. 0.72
   2 !    9.5   0.0   0.00034      0.68     207     251 ..     151     195 ..     141     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.3e-06
                    EEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB...CHHSHHHHHHHHH......HHHHHCTTSSEEEEEETHHHHHHHHH CS
  Abhydrolase_1   3 lvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin..ddygtasvaddld......rildalgddkltlvGhSmGGmialay 90 
                    +++ hG + s  +++++++a+ L ++g  ++l+Dl+ +++   a ++ +   ++ +  +a+ l       +i+ ++ + ++   G S GG  al +
     CCG91907.1  33 VLFAHGSGSSRFSPRNQFVAKVLREKGSGTLLFDLLTSDEE--AEDEFSgiYRFDIGLLAKRLVgaahwlKIQKQTRNYPIGFFGSSTGGGAALVA 126
                    77777777777777777777777777777777777755554..4444445555544445555544444356799999999**************** PP

                    HHHHGGGEEEEEEESE CS
  Abhydrolase_1  91 aaeyperVkalvllga 106
                    aae  +++ka+v+ g+
     CCG91907.1 127 AAELGDKIKAVVSRGG 142
                    *************998 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00034
                    THHHHSEEEEEEETTCSSSCH.HHHHHHHHCHTSEEEEEEETCSSS CS
  Abhydrolase_1 207 lknvlaptlvisgtsDplvpp.kaledlaqllpkkrlvvisdagHl 251
                    lk+v++ptl+i g+ D  v   +++   a +++k +lv+i++a Hl
     CCG91907.1 151 LKKVKSPTLLIVGSLDEFVLRlNEQALEALQCKK-ELVIIPGASHL 195
                    899****************985555555544888.9******9996 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.1   4.2e+03      16      30 ..      32      46 ..      29      63 .. 0.75
   2 !   11.2   0.1   9.6e-05      0.19      49     100 ..      94     145 ..      89     153 .. 0.88
   3 !   10.6   0.0   0.00015      0.29     141     208 ..     153     216 ..     145     219 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.1
                  EEEEE--TTSSTTHC CS
  Peptidase_S9 16 vvvvanirGsggyGe 30
                  +v++a++ Gs+ ++ 
    CCG91907.1 32 IVLFAHGSGSSRFSP 46
                  788888888887764 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 9.6e-05
                   HHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE--- CS
  Peptidase_S9  49 iaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvd 100
                   + aa +l  ++++ +  ++ +G S GG  +++a+++ +d+ ka+v+  +  d
    CCG91907.1  94 VGAAHWLKIQKQTRNYPIGFFGSSTGGGAALVAAAELGDKIKAVVSRGGRPD 145
                   66888999999**********************************9877655 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00015
                   ----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHHHHHHHHHHHHHHH CS
  Peptidase_S9 141 kaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakveelarllaFlkea 208
                   k++ p+Lli+G +D+ v +   ++ ++aLq k    +l+i p++ H + +p a ++  a  ++++  +
    CCG91907.1 153 KVKSPTLLIVGSLDEFV-LRLNEQALEALQCK---KELVIIPGASHLFEEPGALNKVAAVAADWFSAH 216
                   3899***********99.77778888899853...489*************************99865 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.6e-07    0.0013       9      52 ..      96     140 ..      95     145 .. 0.94
   2 ?    1.1   0.0      0.16   3.2e+02     114     167 ..     154     200 ..     147     212 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.6e-07
                 HHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS.SEEEEEEE CS
      BAAT_C   9 ainyllrhpkvkkdkigllGiSkGgelalllasflk.kisavvli 52 
                 a+++l+ + ++ +  ig+ G S Gg  al+ a+ l  ki+avv+ 
  CCG91907.1  96 AAHWLKIQKQTRNYPIGFFGSSTGGGAALVAAAELGdKIKAVVSR 140
                 789********************************99******86 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.16
                 --SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB-S---STT CS
      BAAT_C 114 akgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGHliepPy 167
                  k+p ll+vg  D+ +      +  ++ L++ + k e+ ++  p+a Hl+e P 
  CCG91907.1 154 VKSPTLLIVGSLDEFV-----LRLNEQALEALQCKKELVII--PGASHLFEEPG 200
                 5666666666666544.....23333445555555455566..99999999996 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   7.7e-05      0.15       1      85 [.      33     129 ..      33     150 .. 0.62
   2 !    7.8   0.0    0.0023       4.6     167     217 ..     152     202 ..     139     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.7e-05
                    EEEE--GC.....G....C.HHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHC.........HHHHHHHCCTT.............TTSEEEEE CS
  Abhydrolase_6   1 vlllHGagssassW....l.vapLaallaagvhvlapDlpGhGrsdpppldledl.........adlaalldelaa...........gggpvvlvG 71 
                    vl++HG+gs  s +    + va +++  ++g   l +Dl     ++ + ++++ +          +l       ++           +  p+  +G
     CCG91907.1  33 VLFAHGSGS--SRFsprnQfVAKVLREKGSGT--LLFDLLTS--DEEAEDEFSGIyrfdigllaKRL-------VGaahwlkiqkqtRNYPIGFFG 115
                    89****777..566546524777777777777..89****99..68888777774232222223222.......11233344455777888899** PP

                    ETCHHHHHHHHHHC CS
  Abhydrolase_6  72 HSlGGalalaaapl 85 
                     S GG  al aa+ 
     CCG91907.1 116 SSTGGGAALVAAAE 129
                    **886655543333 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0023
                    TT-TTGC.EEECTT-CHHHHCHHCCCH..STTEEETCE...SSS-HHHHSHHHH CS
  Abhydrolase_6 167 adlpvpl.lvlggeDplvprllerlla..qagarlpvvlpgaGHlphleepdev 217
                    + + +p+ l++g+ D+ v rl e++l   q +++l v++pga+Hl+  eep ++
     CCG91907.1 152 KKVKSPTlLIVGSLDEFVLRLNEQALEalQCKKEL-VIIPGASHLF--EEPGAL 202
                    555556625569****8888888888787799999.*******964..477655 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00034      0.68      91     137 ..      98     145 ..      93     151 .. 0.88
   2 !    4.8   0.0    0.0091        18     222     265 ..     149     191 ..     143     196 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00034
                    HHHHHC.TTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEECE-S- CS
  Peptidase_S15  91 dWlakq.pwsnGkVgmtGiSYlGttqllaaatgvpalkaivpeaaisd 137
                    +Wl  q +  n  +g +G+S +G  +l+aaa+  +++ka+v+  +  d
     CCG91907.1  98 HWLKIQkQTRNYPIGFFGSSTGGGAALVAAAELGDKIKAVVSRGGRPD 145
                    7999999999******************************98766555 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0091
                    HHHCT--S-EEEEEECCSSTTCCHHHHHHHHHCCTT-EEEEECE CS
  Peptidase_S15 222 edadkvkapvllvgGwnDwnvkngaiklyealkapgvklilgpw 265
                    e ++kvk p+ll+ G  D+ v++ + ++ eal+ ++ +l++ p+
     CCG91907.1 149 ESLKKVKSPTLLIVGSLDEFVLRLNEQALEALQCKK-ELVIIPG 191
                    5679**************6666**********9998.8887776 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.9e-05      0.12     173     203 ..     105     139 ..      76     142 .. 0.74
   2 ?    0.1   0.0      0.12   2.5e+02     256     299 ..     152     194 ..     149     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.9e-05
                 EEE...EEEEEETHHHHHHHHHHH.H-SS-SEEEE CS
        AXE1 173 eeR...vavlGasqGGalalavaa.lekrikavva 203
                 ++R   ++ +G+s GG+ al++aa l ++ikavv+
  CCG91907.1 105 QTRnypIGFFGSSTGGGAALVAAAeLGDKIKAVVS 139
                 4443338999*******99876655********97 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.12
                 CC--S-EEEEEETT-SSS-HHHHHHHHHH--SSEEEEEETT-ST CS
        AXE1 256 krvkaevllsvgLeDevcpPstvfaaynkletekeikvyeefah 299
                 k+vk ++ll+vg  De         a  +l+++ke+ + +   h
  CCG91907.1 152 KKVKSPTLLIVGSLDEFVLRLNEQ-ALEALQCKKELVIIPGASH 194
                 578999999999999988876665.569999****999998877 PP

>> PhoPQ_related  PhoPQ-activated pathogenicity-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00012      0.25     258     316 ..     152     209 ..     148     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00012
  PhoPQ_related 258 erltipkyiinasgDdffvpdstkfyfekLkgekalrivPnssHglsnkevveslvafv 316
                    ++++ p ++i +s D+f +  + +  +e+L+ +k+l i+P +sH   +  ++++++a  
     CCG91907.1 152 KKVKSPTLLIVGSLDEFVLRLNEQA-LEALQCKKELVIIPGASHLFEEPGALNKVAAVA 209
                    6778899**********99988776.8*****************999998888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 1845.46
//
Query:       CCG91908.1  [L=406]
Description: Argininosuccinate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.1e-159  529.7   0.0   5.9e-159  529.5   0.0    1.0  1  Arginosuc_synth  Arginosuccinate synthase
  ------ inclusion threshold ------
      0.095   12.2   0.0       0.15   11.5   0.0    1.3  1  QueC             Queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  529.5   0.0  6.6e-163  5.9e-159       1     386 [.       4     390 ..       4     392 .. 0.99

  Alignments for each domain:
  == domain 1  score: 529.5 bits;  conditional E-value: 6.6e-163
  Arginosuc_synth   1 vLaysGGlDtsviikllkeklgeeviavavdvGqeeedldevkekalklgavksvvvDakeefvedyifpaikanalYedrYllgtalaRPlia 94 
                      vLaysGGlDtsvi+ +l e++++evia+++++Gqe e+l   +eka+klga k +v D  eefv+dyi+p ++a a+Ye++Yllgt++aRPlia
       CCG91908.1   4 VLAYSGGLDTSVILRWLIEQYQAEVIAYCANLGQE-EELIGLEEKARKLGASKCIVEDLTEEFVRDYIYPMLRAGAIYENQYLLGTSIARPLIA 96 
                      8**********************************.9999****************************************************** PP

  Arginosuc_synth  95 kklvevakkegaeavahGctGkGnDqvRfevsirslaPdlkviaPvRelelt.ReeeieyakekgipvevtkkkpysiDenllgrsieagiLed 187
                      kk+veva+kega+ +ahG+tGkGnDqvRfe++ ++laP++kvi+P+Re+ ++ Re+ i+ya+++gi+v+v+++kpys+D+n+l++s+e+g+Led
       CCG91908.1  97 KKQVEVARKEGADSLAHGATGKGNDQVRFELAYAALAPEFKVISPWREWGFQgREDLIAYARKQGIEVPVSREKPYSMDRNILHISYESGVLED 190
                      ***************************************************99***************************************** PP

  Arginosuc_synth 188 pknappediyeltkdpakapdepeeveiefekGvPvaldgeelsvlelieklneiagkhGvGRiDivedRlvglksReiYeapaalvLikahkd 281
                      p+++pp+d+++ltk+p++ap+ pe+ve+efe+G  v ++ge+ s++e++++ln+++ khG+GRiDive+R+vg+ksR++Ye+p+ ++L+  h++
       CCG91908.1 191 PWQEPPQDLFRLTKSPEEAPNIPEVVELEFEEGNCVGVNGEKKSPVEILKSLNRLGAKHGIGRIDIVENRFVGIKSRGVYECPGGTILYFGHRQ 284
                      ********************************************************************************************** PP

  Arginosuc_synth 282 lekltlerevakfkkiveekyaelvYkGlwfsPlkealdafiektqervtGtvrvklfkGsvvvlgReseeslYdeelasydeed.efdqkeae 374
                      +e++tl+rev+++++++  kyael+Y+G+wfsP++  l+a+ +++q+ vtGtvr+klfkG+++ lgR+s++slY+ +la+++ ++ ++d+k+a+
       CCG91908.1 285 METITLDREVMHLRDSLIPKYAELIYNGFWFSPERYFLQAAFDQSQRFVTGTVRLKLFKGQLYTLGRKSPYSLYNPKLATMEADQgAYDPKDAT 378
                      *********************************************************************************9765379****** PP

  Arginosuc_synth 375 Gfikihglqakl 386
                      Gfik+++l+ ++
       CCG91908.1 379 GFIKLQSLRLRT 390
                      ********9886 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.7e-05      0.15       2      38 ..       3      40 ..       2      67 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.7e-05
                EEEE--SSHHHHHHHHHHHHH-.SEEEEEEEESS-TTS CS
        QueC  2 avvllSGGlDSttvlalakkeg.kevealtfdYgqrhk 38
                +v+  SGGlD +++l +  +++ +ev+a   + gq ++
  CCG91908.1  3 IVLAYSGGLDTSVILRWLIEQYqAEVIAYCANLGQEEE 40
                68889****************95689999999999753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2941.95
//
Query:       CCG91909.1  [L=649]
Description: 1-deoxy-D-xylulose-5-phosphate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.4e-114  380.0   0.0   8.5e-114  379.4   0.0    1.3  1  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
    1.4e-38  132.4   0.0    2.4e-38  131.6   0.0    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
    2.8e-26   91.8   0.0    1.3e-25   89.7   0.0    2.0  2  Transketolase_C  Transketolase, C-terminal domain
      3e-07   30.3   0.0      2e-06   27.6   0.0    2.2  2  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
    0.00014   20.9   0.1    0.00022   20.3   0.1    1.2  1  E1_dh            Dehydrogenase E1 component
    0.00021   21.5   0.0    0.00046   20.5   0.0    1.6  1  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma


Domain annotation for each model (and alignments):
>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.4   0.0  2.8e-117  8.5e-114       1     273 []      24     297 ..      24     297 .. 0.99

  Alignments for each domain:
  == domain 1  score: 379.4 bits;  conditional E-value: 2.8e-117
  DXP_synthase_N   1 LekinspedlkklskeeleelaeelrefliesvsktggHlasnLgvveLtlalhyvfdtpkDklvwDvgHqaYvhKiltgRkdkfktlrqkgGls 95 
                     L++i+sp+dlkk+   el++laee+r+++i+++sk+ggHl++nLgvveLtlalhyvfd pkD++v+Dv+HqaYvhKiltgRk++f+t+rq gG+s
      CCG91909.1  24 LDQIDSPSDLKKIPIPELPKLAEEIRQEMITVLSKNGGHLGPNLGVVELTLALHYVFDVPKDNFVFDVSHQAYVHKILTGRKNRFHTIRQPGGIS 118
                     799******************************************************************************************** PP

  DXP_synthase_N  96 gfpkrsEseyDafeagHsstsisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNemsisknvGalskylskll 190
                     gf+ r+EseyD+++agH++t++saalG+av rd +g k++v+a++GD+a+t+G++fealnni++++++l+vilNdNe+si+knvGa+++y++k++
      CCG91909.1 119 GFMCREESEYDCYGAGHAGTALSAALGMAVGRDRRGGKEHVIALCGDAAFTCGITFEALNNIASTTQRLIVILNDNEWSIDKNVGAIASYFNKIV 213
                     *********************************************************************************************** PP

  DXP_synthase_N 191 sskayeklkkevkkllkki.gkklaelakklkeslkellvpgtlfeelgfkYlGpidGhdleelikvleevkklkgpvllhvvt 273
                     +++ay+ l+++v+k+l+k  gk++ ++a+k++e++k+ll p+++feelg++Y GpidGhd+ +li+++e +k+ + pvllhv+t
      CCG91909.1 214 TNPAYSYLRDRVEKVLEKWpGKNVLKVARKAEEAFKSLLWPSVIFEELGLTYHGPIDGHDIPRLISTFEFLKNQEYPVLLHVIT 297
                     ****************75549*************************************************************98 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   7.9e-42   2.4e-38       4     173 ..     333     491 ..     331     494 .. 0.97

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 7.9e-42
                   EHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHHHCHH CS
  Transket_pyr   4 awrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqairsge 100
                   ++++++ae++ +l++ + +vv+i+a++ +gt +  ++ ++++   r++d+gi+E++++ fa+G+a++g  +++++a++++F++    +a++ i++++
    CCG91909.1 333 TYSEVFAETMIKLADMNRNVVAITAAMPNGTALDKFQPKFPD---RYFDVGIAEEHAVIFAAGLATKG--FKPYCAIYSTFLQ----RAYDPIIHDV 420
                   7899**************************************...***********************..9************....********** PP

                   HHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SS CS
  Transket_pyr 101 akgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpks 173
                    ++kl+v  +++r ++  g dGp+h++++++a+lr++p+++++ P+d+ e++ +l +a++   ++Pv++r+p++
    CCG91909.1 421 CLQKLPVVfCLDRGGL-SGDDGPTHHGLFDVAYLRTVPNITIMHPKDEDELADMLFTAMH--HPGPVAIRYPRG 491
                   ****************.9******************************************..557*******97 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.72   2.1e+03      51      97 ..     174     226 ..     158     230 .. 0.62
   2 !   89.7   0.0   4.4e-29   1.3e-25       1     122 [.     508     627 ..     508     628 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.72
                      HHHHHHHHHHHSEEEEEEEEES......TTSHHHHHHHHHHHCCCTTCSSEEE CS
  Transketolase_C  51 ketilesvkktgrlvvveeavk......rgGigsevaaalaeeafdgldapvk 97 
                      +e +++++  t+rl+v+ ++++       g+i+s ++++++  a+ +l  +v+
       CCG91909.1 174 FEALNNIASTTQRLIVILNDNEwsidknVGAIASYFNKIVTNPAYSYLRDRVE 226
                      66777788888888887666541112214556666666666666666666555 PP

  == domain 2  score: 89.7 bits;  conditional E-value: 4.4e-29
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdglda 94 
                      g+ae+l+ g++v++++ G m e+a e a++ e+ g+sa ++++rtvkp+D+ t++  +++ + +v++e++v  gG+gs v++ l++    gl +
       CCG91909.1 508 GRAEVLQHGREVAIFGLGVMIEMAKELAARFEELGYSAALINPRTVKPFDRGTLEFFARHVELVVTIEDHVLAGGFGSLVLEELQQ---LGLRT 598
                      799***********************************************************************************...***** PP

                      EEEEEEE-SS.SSSSGHHHHHHHTT-SHH CS
  Transketolase_C  95 pvkrvggpdv.iepgsaeelekafgldae 122
                      pv+r+g pd  ie+g+ + l k +gl++e
       CCG91909.1 599 PVVRIGWPDQfIEHGKVDILRKKYGLTVE 627
                      **************************997 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   6.8e-10     2e-06      20      84 ..     126     196 ..     117     252 .. 0.76
   2 ?   -0.8   0.0      0.39   1.2e+03     128     151 ..     463     486 ..     452     487 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 6.8e-10
                   EEECETTTS-TTTHHHHHHHHHH...HST.TSEEEEEEEHHHHHHT..GGGHHHHHHTT-SEEEEEEE-SB CS
  TPP_enzyme_C  20 syltsgglgtmGyglpaAiGakl...akp.drevvaivGDGgflmi..lqelatavrrnlpitvvvlnNeg 84 
                   s ++++g g+ G +l+aA+G+++    +  +++v+a++GD +f     +++l +++     ++v++ +Ne+
    CCG91909.1 126 SEYDCYGAGHAGTALSAALGMAVgrdRRGgKEHVIALCGDAAFTCGitFEALNNIASTTQRLIVILNDNEW 196
                   557899*****************643232368**********76433589999999997777777777765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.39
                   SSH.HHHHHHHHHHHHCSSSEEEE CS
  TPP_enzyme_C 128 ekadveeleealkealekkgpali 151
                   +++d +el++ l +a+++ gp+ i
    CCG91909.1 463 HPKDEDELADMLFTAMHHPGPVAI 486
                   467789***************987 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   7.4e-08   0.00022     100     165 ..     131     198 ..      87     209 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7.4e-08
                 -SSTTTHHHHHH..HHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEET CS
       E1_dh 100 ngivgaqvplva..GialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygi 165
                  g  +a   l a  G+a+    +g ke +i+l+GD+A   G+ +ealn  a      i + + N++ i
  CCG91909.1 131 YGAGHAGTALSAalGMAVGRDRRGGKEHVIALCGDAAFTCGITFEALNNIASTTQRLIVILNDNEWSI 198
                 44444443344445*********************************988888889999999999987 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.5e-07   0.00046       2      73 ..     518     589 ..     517     603 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.5e-07
                 SEEEEE-STHHHHHHHHHHHHHHTT--EEEEEES--BS--HHHHHHHSTT-SEEEEEE-S--TT-G-HHHHH CS
     PFOR_II   2 evvivamGsvagtaksavdelReegikvGllrlrtlrPFPeeelkellkkvkkvvvldrnisfgseGqlvee 73 
                 ev+i+++G +++ ak+ + ++ e g+++ l+ +rt+ PF +  l+ ++++v+ vv+++  +  g  G lv e
  CCG91909.1 518 EVAIFGLGVMIEMAKELAARFEELGYSAALINPRTVKPFDRGTLEFFARHVELVVTIEDHVLAGGFGSLVLE 589
                 899*********************************************************988888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4491.74
//
Query:       CCG91910.1  [L=81]
Description: Exodeoxyribonuclease 7 small subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-21   74.0   3.9    8.9e-21   73.7   3.9    1.1  1  Exonuc_VII_S   Exonuclease VII small subunit
     0.0032   17.7   1.0     0.0038   17.4   1.0    1.1  1  Cortex-I_coil  Cortexillin I, coiled coil
  ------ inclusion threshold ------
      0.038   13.7   0.1      0.043   13.6   0.1    1.1  1  Use1           Membrane fusion protein Use1


Domain annotation for each model (and alignments):
>> Exonuc_VII_S  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   3.9   1.5e-24   8.9e-21       1      50 [.      16      65 ..      16      67 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 1.5e-24
  Exonuc_VII_S  1 FEealaeLeeIvekLEsgelsLeeslklyeeGvkLlkeCekkLdeaeqkv 50
                  FEea+++L+eIv+ LEsg+++Le++l++yeeG +Llk C +kL+eaeq++
    CCG91910.1 16 FEEAFKKLQEIVNSLESGQMPLEDLLQKYEEGRRLLKICDEKLNEAEQRI 65
                  9************************************************9 PP

>> Cortex-I_coil  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.0   6.3e-07    0.0038      14      69 ..      19      74 ..       6      77 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.3e-07
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil 14 lanklaglenslesekvsreelikqkdelesllasleseaaerekrlreleaklde 69
                     +kl  + nsles ++  e+l+++ +e + ll+  +++ +e e+r+  l ak d+
     CCG91910.1 19 AFKKLQEIVNSLESGQMPLEDLLQKYEEGRRLLKICDEKLNEAEQRIIVLSAKQDN 74
                   4579999*********************************************9886 PP

>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   7.1e-06     0.043      20      69 ..       8      56 ..       2      79 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.1e-06
        Use1 20 ersenewrLekyvkaleemleeLkkesskpskevlkeYsekveaLkllle 69
                +  e+e+r+e + k l+e ++ L++ +  p ++ l++Y+e    Lk   e
  CCG91910.1  8 SGGEKEMRFEEAFKKLQEIVNSLESGQM-PLEDLLQKYEEGRRLLKICDE 56
                445679******************9996.**********98888875433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1322  (0.0737353); expected 358.6 (0.02)
Passed bias filter:                      851  (0.047465); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 588.79
//
Query:       CCG91911.1  [L=171]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.065   12.4   0.0      0.092   11.9   0.0    1.2  1  PaaA_PaaC  Phenylacetic acid catabolic protein


Domain annotation for each model (and alignments):
>> PaaA_PaaC  Phenylacetic acid catabolic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.1e-06     0.092       6      59 ..      49     104 ..      36     105 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.1e-06
                 ........HHHHHHHHHHHHHHHHHHHHHHTTT..TTSSSHHHHHHHHHHHHHHHH CS
   PaaA_PaaC   6 dwmpeeyrkalirlllqlAdselilaqresewi..grAPsLeediallnivlDelG 59 
                  +mp+++r++l + +l +  se ++ + +s+w+  ++ P+L + + +l i+ De G
  CCG91911.1  49 LEMPKTKRHTLCKKVLSHPRSETMSFYLLSHWLieTQSPMLCRWLDMLGIAHDEKG 104
                 579*****************************65589****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1269.13
//
Query:       CCG91912.1  [L=60]
Description: hypothetical protein MFUM_270009 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 467.54
//
Query:       CCG91913.1  [L=881]
Description: Valyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.2e-165  550.8   0.0   1.3e-126  423.3   0.0    3.1  2  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
    1.1e-27   96.9   2.1    1.1e-27   96.9   2.1    1.9  2  Anticodon_1      Anticodon-binding domain of tRNA
    8.5e-22   77.4   0.1    6.7e-08   31.7   0.0    3.6  3  tRNA-synt_1g     tRNA synthetases class I (M)
    3.3e-06   27.3   9.5    7.4e-06   26.2   9.5    1.7  1  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
    9.2e-05   22.0   0.0    0.00076   19.0   0.0    2.2  2  tRNA-synt_1_2    Leucyl-tRNA synthetase, Domain 2
     0.0057   16.0   0.0       0.18   11.1   0.0    2.3  2  tRNA-synt_1e     tRNA synthetases class I (C) catalytic domai


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  423.3   0.0  4.4e-130  1.3e-126       2     438 ..      20     425 ..      19     437 .. 0.96
   2 !  122.4   0.0   5.6e-39   1.7e-35     478     601 ..     436     563 ..     426     564 .. 0.93

  Alignments for each domain:
  == domain 1  score: 423.3 bits;  conditional E-value: 4.4e-130
  tRNA-synt_1   2 lyekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgree 99 
                  ly +W ++++f++    + +k++f++v +PP++tG l +Gh+l++t++d++ r +rm+G+evl++pG+DhaGla++ +v+k l ++++ +   l++ee
   CCG91913.1  20 LYREWLDQKIFHAD--PNSSKPPFSIVMPPPNITGVLTLGHVLNNTIQDVLSRKARMEGYEVLWLPGLDHAGLATQVAVQKYLLKTKNIDPRTLSKEE 115
                  799*********99..7788****************************************************************************** PP

  tRNA-synt_1 100 frekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkkdalihvafpladk 197
                  f + v+ewk+  +++i +q+++lG s+D++r ++T+d+ +++av  +f +l+ kgliyrgk+++nw+++++tals+ Ev  k  ++ l++v++plad+
   CCG91913.1 116 FLKIVWEWKESHSNRILEQLQKLGCSADWERTRFTMDSAYSKAVSTAFIKLYHKGLIYRGKRMINWCPASQTALSDEEVIPKKIDGFLFYVRYPLADQ 213
                  ************************************************************************************************** PP

  tRNA-synt_1 198 eevklviaTTtPeTllgdtavavnpeldyvitkeklilaeallkslvkkesekkiledergkeLegkevelplvnrkipiiaddyvdkeaGtGvVkia 295
                   +  l +aTT+PeT+++d a+av+pe                               d+r+++++gk++  p+ ++ ip+iad  vd  +G+Gv ki+
   CCG91913.1 214 PSLFLTVATTRPETIPADSALAVHPE-------------------------------DQRYQQFIGKFCLRPFPKEPIPVIADTRVDPKFGSGVLKIT 280
                  **************************...............................9**************************************** PP

  tRNA-synt_1 296 PahdedDyevgkkynlevinildedgtlt.eeaaefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkpiiyrateqWfvrvkeladaal 392
                  Pahd+ D+e+g ++ l++  il++dg+++  e++  +gl++f+arkk +e l+  gll ++++ +h v+f+er +++i++r++eqWf r  + ++ al
   CCG91913.1 281 PAHDTLDFEIGCEHHLPIRDILTADGKINcPELPALHGLDRFEARKKSIELLSSLGLLESQQPYSHVVGFSERADVVIEPRISEQWFLRYPKTKE-AL 377
                  ****************************95688*********************************************************99766.56 PP

  tRNA-synt_1 393 kave..kvqfvpkskekryaswleniqdWciSRqrwWGhriplfvske 438
                  ++v+   ++f p   ek y++w++ni+dWciSRq wWGh+ip++ ++ 
   CCG91913.1 378 EVVKekIITFFPAYWEKVYEHWIKNIKDWCISRQVWWGHPIPVWWKNG 425
                  66665578************************************9875 PP

  == domain 2  score: 122.4 bits;  conditional E-value: 5.6e-39
  tRNA-synt_1 478 gelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgse........PfkevlvhglvrdeeGrKmSKs 567
                  + +++d+d+lD+WFsS +w + t++ +e+     kkf+p+++l++G Dii+ Wvar+++ +l+++ s         Pf++v+ +gl+rd  GrKmSKs
   CCG91913.1 436 EGWQRDPDTLDTWFSSWLWAYETMD-GET----RKKFYPTNVLVTGPDIIFLWVARMVIAGLEFKPSLsddiyqniPFRKVYFTGLIRDRLGRKMSKS 528
                  5689*********************.444....57799**************************998889999999********************** PP

  tRNA-synt_1 568 lgNvidpldvikkygadalRltli.lsdvgrdinl 601
                  lgN +dpl++i+kygad lR+ l+  +++g+di++
   CCG91913.1 529 LGNSPDPLELIQKYGADGLRFGLLrIAPQGQDIRF 563
                  ************************9*******997 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9   2.1   3.6e-31   1.1e-27       2     147 ..     607     755 ..     606     760 .. 0.82
   2 ?   -2.7   0.2       1.7   5.2e+03      99     129 ..     840     878 ..     830     880 .. 0.54

  Alignments for each domain:
  == domain 1  score: 96.9 bits;  conditional E-value: 3.6e-31
  Anticodon_1   2 rwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkra.aqevllevletllrllaPfmPfitEelwqreeeel.g 97 
                  + il++l+++    +ea+e ++fn+aa  lyef+wn++c+ ++e++k +l+ +s+e  ++ a e+  + ++ +lr+l+Pf+Pf+tEelw+    ++  
   CCG91913.1 607 QDILRKLAQTSILLKEAFEAFEFNQAAIILYEFVWNEFCSKFIEATKWELAFDSKET-HQgALETFDYSMSVILRWLHPFVPFVTEELWR----RMaF 699
                  579***********************************************8776644.57799**************************4....4437 PP

  Anticodon_1  98 kkesimlaewpekaeelekele.......eeevellkeivkairklrselkikpsse 147
                  + ++i l++wp+ +e +e  ++        +  + + e+v a+r+lr+++  + +++
   CCG91913.1 700 GHTTIQLEPWPN-EELQEILKKplydphaASIAQAIFETVVAARNLRAQYCPNFNQK 755
                  7789*******5.44443333223345676666777778********9997666655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.7
  Anticodon_1  99 kesimlaewpe.kaeelekele.........eeevellkei 129
                  ++++++a+  + k e++++e++         ee++e++ +i
   CCG91913.1 840 EQTLSKAP--KeKIEQWKEEKNlidlkikrlEEQLEHMSSI 878
                  45554443..3355555333322234455778888887665 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   2.2e-11   6.7e-08       9     135 ..      49     194 ..      42     198 .. 0.77
   2 !   18.1   0.5     3e-07    0.0009     178     239 ..     360     422 ..     338     429 .. 0.83
   3 !   22.5   0.0   1.4e-08     4e-05     325     376 ..     522     573 ..     504     583 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 2.2e-11
                   --SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHH.....TTS-HHHHHHH............HHHHHHHHHHHTT---S.. CS
  tRNA-synt_1g   9 YangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAek.....egvtpeelvek............vheeikelfkklnisfd.. 86 
                    ++g+l lGh+l+  + D+++R  r++g+evl++ g D+ G +++++ +k     ++++p+ l ++             +++i e+++kl+ s d  
    CCG91913.1  49 NITGVLTLGHVLNNTIQDVLSRKARMEGYEVLWLPGLDHAGLATQVAVQKyllktKNIDPRTLSKEeflkivwewkesHSNRILEQLQKLGCSADwe 145
                   5678999*****99999****************************9987644444789998776542222222211113455567788888887621 PP

                   EEEETTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG- CS
  tRNA-synt_1g  87 kygrttseehkelvqeifkklkekgliyekeieqlycpkderflpdryv 135
                       t +++ +++v+  f kl++kgliy+++    +cp+ ++ l+d++v
    CCG91913.1 146 RTRFTMDSAYSKAVSTAFIKLYHKGLIYRGKRMINWCPASQTALSDEEV 194
                   33446678889999999*****************************987 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 3e-07
                   EE.EEEEEE-GGGGHHHHHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SSS-EET..T CS
  tRNA-synt_1g 178 vketehlffklskfekklkewieeeekeleenvkkivkewlkegLkdlaisrdldwGipvP..g 239
                    + +e++f++ +k +++l+   e+  +  +   +k+ ++w+k+ +kd++isr++ wG p+P   
    CCG91913.1 360 PRISEQWFLRYPKTKEALEVVKEKIITFFPAYWEKVYEHWIKN-IKDWCISRQVWWGHPIPvwW 422
                   567899*********999887755555599************9.*****************553 PP

  == domain 3  score: 22.5 bits;  conditional E-value: 1.4e-08
                   -------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-HHHHHHHHH CS
  tRNA-synt_1g 325 gkKlSkSrgvvvkakealerldadllRYylaaeapekkDldfswedfvervN 376
                   g+K+SkS g+  ++ e+++++ ad lR+ l++ ap+ +D+ f+++++ e  N
    CCG91913.1 522 GRKMSKSLGNSPDPLELIQKYGADGLRFGLLRIAPQGQDIRFEESQIEEGRN 573
                   89*****************************************999987665 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   9.5   2.5e-09   7.4e-06       1      65 [.     811     875 ..     811     876 .. 0.98

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2.5e-09
  Val_tRNA-synt_C   1 DvekeraRLeKeLaklekeiervqkKLanpgFveKAPaeVVeeekaklaeleeqaeklkerLskL 65 
                      D+e+e++R +KeL+kl+ +   ++k+L  ++ ++KAP+e +e+ k+ +     + ++l+e+L+ +
       CCG91913.1 811 DFESEKKRIDKELSKLKRDQLLLEKRLTDEQTLSKAPKEKIEQWKEEKNLIDLKIKRLEEQLEHM 875
                      89************************************************************987 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.18   5.4e+02      12      46 ..     206     241 ..     204     247 .. 0.78
   2 !   19.0   0.0   2.6e-07   0.00076      84     144 ..     246     306 ..     239     315 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.18
  tRNA-synt_1_2  12 iefkvees.eeklevfttrpdtlfGvtfvalapehp 46 
                    ++++++++ +  l+v ttrp+t+   + +a+ pe +
     CCG91913.1 206 VRYPLADQpSLFLTVATTRPETIPADSALAVHPEDQ 241
                    56666666556799*********9999998888865 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 2.6e-07
  tRNA-synt_1_2  84 ftglkaihPitgekipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikped 144
                    f g +++ P+ +e ip+     v  ++g+g++   Pahd+ Dfe   +++lpi+ +++ ++
     CCG91913.1 246 FIGKFCLRPFPKEPIPVIADTRVDPKFGSGVLKITPAHDTLDFEIGCEHHLPIRDILTADG 306
                    568899*************************************************998654 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.028        85      21      51 ..      52      82 ..      41     176 .. 0.85
   2 !   11.1   0.0   6.1e-05      0.18     251     298 ..     522     570 ..     507     573 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.028
                  S--BHHHHHHHHHHHHHHHHHHHTT-EEEEE CS
  tRNA-synt_1e 21 dashlGhaRslvafDilrrilqalgYdvqfv 51
                      lGh+ +  + D+l r  ++ gY+v ++
    CCG91913.1 52 GVLTLGHVLNNTIQDVLSRKARMEGYEVLWL 82
                  56789***********************876 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.1e-05
                   TBE--TTTT---BHHHHHTTS-HHHHHHHHHSS-.TTS-EEE-HHHHHH CS
  tRNA-synt_1e 251 gekmsksLknfitikdvlkkfdprqlRllllsah.yrsqldfkeellee 298
                   g+kmsksL+n     ++++k+ +  lR+ ll      + + f+e+++ee
    CCG91913.1 522 GRKMSKSLGNSPDPLELIQKYGADGLRFGLLRIApQGQDIRFEESQIEE 570
                   68**************************988765155779999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (881 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.49
# Mc/sec: 5389.14
//
Query:       CCG91914.1  [L=346]
Description: DNA strand exchange and recombination protein with protease and nuclease activity [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-129  431.5   0.4   1.3e-129  431.3   0.4    1.0  1  RecA      recA bacterial DNA recombination protein
      1e-12   47.9   0.3    5.9e-12   45.4   0.3    1.8  1  Rad51     Rad51
    9.7e-10   38.2   3.1    1.1e-07   31.5   3.0    2.8  1  ATPase    KaiC
    0.00019   21.4   0.0    0.00031   20.8   0.0    1.3  1  ATPase_2  ATPase domain predominantly from Archaea
    0.00069   19.4   0.0     0.0011   18.7   0.0    1.3  1  AAA_24    AAA domain
    0.00084   19.8   0.1     0.0014   19.0   0.1    1.3  1  AAA       ATPase family associated with various cellular acti
     0.0014   18.2   0.4       0.22   11.1   0.1    2.2  2  AAA_25    AAA domain
     0.0044   17.3   0.0     0.0085   16.4   0.0    1.5  1  AAA_22    AAA domain
  ------ inclusion threshold ------
      0.013   14.4   0.0       0.02   13.7   0.0    1.2  1  AAA_35    AAA-like domain
      0.014   15.8   0.0      0.028   14.8   0.0    1.5  1  AAA_16    AAA ATPase domain
      0.047   13.5   0.0       0.14   12.0   0.0    1.9  2  TK        Thymidine kinase
      0.084   13.4   0.0       0.17   12.4   0.0    1.7  1  ABC_tran  ABC transporter
      0.088   12.1   0.1       0.16   11.2   0.1    1.6  1  DnaB_C    DnaB-like helicase C terminal domain


Domain annotation for each model (and alignments):
>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  431.3   0.4  9.5e-133  1.3e-129       1     263 []      14     277 ..      14     277 .. 0.99

  Alignments for each domain:
  == domain 1  score: 431.3 bits;  conditional E-value: 9.5e-133
                 HHHHHHHHHHHHHH-TTSS--TTS--.-----EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEESS----HHHHH CS
        RecA   1 kaleaalkqiekkfGkgsimklgdekeklkvetissGslaldialGiGGlpkGriieiyGpessGkttlalhaiaeaqkkggvaafidaehaldpkyak 99 
                 k le a++ i k+fG+gsi++lgd++++lk+eti++G l++d alG+GG+p+GriieiyGpessGkttlal +ia+aqk ggv + id+ehaldp+y++
  CCG91914.1  14 KSLELAIQSIAKEFGEGSILRLGDDRSRLKIETIPTGCLTIDRALGVGGFPRGRIIEIYGPESSGKTTLALTVIAQAQKMGGVGVIIDVEHALDPHYCR 112
                 6799*********************************************************************************************** PP

                 HTT--GGG-EEE--SSHHHHHHHHHHHHTTT--SEEEEE-TTT---STT-----------HHHHHHHHHHHHHHHHHTTT--EEEEEEE---------- CS
        RecA 100 klGvdidellvsqpdtGeqaleiadalvrsgaidlivvdsvaalvpkaeieGemgdskvglqarlmsqalrkltgaisksntvvifinqirekiGvmfg 198
                 klGv+++ell+sqpd+Ge+al ia++l+rs+a+d+iv+dsvaal+p+ eieG+mgd+ vg qarlms alrklt++isk++tv if nq+r+kiGvmfg
  CCG91914.1 113 KLGVNMNELLISQPDSGEEALTIAETLIRSNAVDVIVIDSVAALTPRVEIEGQMGDAVVGAQARLMSSALRKLTAQISKAKTVCIFTNQLRDKIGVMFG 211
                 *************************************************************************************************** PP

                 -------HHHHHHH-SEEEEEEEES------.---EEEEEEEEEEESSS----EEEEEEETTTEE- CS
        RecA 199 npetttGGralkfyasvrldvrrieeikeke.evignktkvkvvknkvappfkeaeldilygeGis 263
                 npett+GG+alkfyasvr+d+r+ +++k  + +v gn+tk+kvvknkvappf e+e+dily+eGis
  CCG91914.1 212 NPETTPGGKALKFYASVRIDIRKLAQLKGPDgTVYGNRTKLKVVKNKVAPPFTECEFDILYNEGIS 277
                 ****************************9886889*****************************97 PP

>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.3   4.3e-15   5.9e-12      12     247 ..      40     270 ..      26     278 .. 0.74

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 4.3e-15
                 HHHSS-EE--S-HHHHHHH.TSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHTT--HHHHGGGEEEE CS
       Rad51  12 krsellqlttGskklDelL.gGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaerykldkeevlenvaya 109
                 +r ++ ++ tG+ ++D+ L  GG++ g i ei+G   sGkt l+ t  v++q   ++gG     v id e ++ p+       + +++ +e+l+  +  
  CCG91914.1  40 SRLKIETIPTGCLTIDRALgVGGFPRGRIIEIYGPESSGKTTLALT--VIAQAQ-KMGG---VGVIIDVEHALDPHYCR----KLGVNMNELLISQP-- 126
                 5777889***********955********************99755..566644.4555...4689*********9765....56899999998765.. PP

                 E--STTHHHHHHHHTHHHHHHS-EEEEEEETTTGGG.CH-------THHHHHHHHHHHHHHHHHHHHH...--EEEEEEE-------.----------- CS
       Rad51 110 RaytiehqeellqqaaallaedkfallivDsvtaly.RtdfsgrgelakRqqklgkllrtLrkladef...evavvitnqvvaqvdgqaalfsadpkkP 204
                      ++ ee l+ a +l+ ++ + ++++Dsv+al  R++ +g+   a  + +   + ++Lrkl+ +    +   + tnq  ++++    +f ++p+  
  CCG91914.1 127 -----DSGEEALTIAETLIRSNAVDVIVIDSVAALTpRVEIEGQMGDAVVGAQARLMSSALRKLTAQIskaKTVCIFTNQLRDKIGV---MF-GNPETT 216
                 .....88899999999999***************855***9998665555555555556666666555111455678*****99998...66.566666 PP

                 -HHHHHHHH-SEEEEEEE-ST.............TEEEEEEES-SSS.-S-EEEEEE CS
       Rad51 205 igGlvlahasttRlalrkgkg.............eeRivkvvdsPnl.peleavfai 247
                  gG+ l   +++R+ +rk  +             +   +kvv+     p +e+ f i
  CCG91914.1 217 PGGKALKFYASVRIDIRKLAQlkgpdgtvygnrtK---LKVVKNKVApPFTECEFDI 270
                 69***************976655677777763222...4444433321334555544 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   3.0   7.8e-11   1.1e-07       1     164 [.      47     202 ..      47     225 .. 0.70

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 7.8e-11
      ATPase   1 vktgIeglDeil.kgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenakslGwdlekleeegklaiidasesaeesaee 98 
                 ++tg   +D+ l  gG+p+gr++ i+G   +GKt++al+ +i +a+k+g  gv++ ve       + +++lG+++++l  ++     +a + ae+ ++ 
  CCG91914.1  47 IPTGCLTIDRALgVGGFPRGRIIEIYGPESSGKTTLALT-VIAQAQKMGGVGVIIDVEHALDP--HYCRKLGVNMNELLISQPDSGEEALTIAETLIR- 141
                 6899999*****88************************9.56677999*********977653..678999999988876644444444444444332. PP

      ATPase  99 kdkedlee.lieelaeaikeikakrvviDsitglayeekeavaReilrqlvrvlkklgvTailvsek 164
                   +++++  +i+++a    +++++  + D + g     ++ ++ + lr+l+ +++k +++ i++++ 
  CCG91914.1 142 --SNAVDViVIDSVAALTPRVEIEGQMGDAVVGA----QARLMSSALRKLTAQISKAKTVCIFTNQL 202
                 ..22222213444455555555555555555555....45555566666666666666666666665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.2e-07   0.00031      21     116 ..      67     192 ..      62     208 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.2e-07
    ATPase_2  21 eiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefie............eeeekkklekal...................giavpk 88 
                 +i+ iYGpe+sGKt+L   +i + ++ +  v  +i+++     ++ ++++              ee+  ++++l                     +++ 
  CCG91914.1  67 RIIEIYGPESSGKTTLALTVIAQAQKMG-GVGVIIDVEHALDPHYCRKLGvnmnellisqpdSGEEALTIAETLirsnavdvividsvaaltpRVEIEG 164
                 6889*******************98877.6888899999999999888887776666665542333333333335666666666776655555444555 PP

    ATPase_2  89 aeleeilkeksklvfkaielllekikkk 116
                 + +++++  + +l+ +a+ +l ++i+k 
  CCG91914.1 165 QMGDAVVGAQARLMSSALRKLTAQISKA 192
                 5555555566666666666666666655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     8e-07    0.0011       5      78 ..      69     157 ..      65     169 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 8e-07
      AAA_24   5 iliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdie..........swedfldevvelaaeladyktlviDtidele 78 
                 i iyGp+ +GKTtla++        g   ++id+e+ l+  + +k+   +          s e+ l  +++l + +a  +++viD++  l 
  CCG91914.1  69 IEIYGPESSGKTTLALTViaqaqkmGGVGVIIDVEHALDPHYCRKLGV-NmnellisqpdSGEEALTIAETLIRSNA-VDVIVIDSVAALT 157
                 679******************99999999*******888888888763.3467888666666666666666655555.9*******98775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1     1e-06    0.0014       3     111 ..      71     201 ..      69     209 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1e-06
                 EESSTTSSHHHHHHHHHHHH...........THE.........EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH....... CS
         AAA   3 lyGppGtGKTllakavakel...........gve.........fleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr....... 74 
                 +yGp   GKT+la  v+ ++             e          l +++ ell +    +e+ +    + ++++a   +++iD + al+++        
  CCG91914.1  71 IYGPESSGKTTLALTVIAQAqkmggvgviidV-EhaldphycrKLGVNMNELLISQPDSGEEALTIAETLIRSNA-VDVIVIDSVAALTPRVeiegqmg 167
                 79**************9997444333333330.133344433366677777774445555555555555578888.9***********99998855442 PP

                 TTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESS CS
         AAA  75 sgseseeeervvnqLlteldgvkkkeskvivigatnr 111
                 +     +++ + ++L +   + +k  +k +v++ tn+
  CCG91914.1 168 DAVVGAQARLMSSALRKLTAQISK--AK-TVCIFTNQ 201
                 222222333333333333333333..33.34444444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00016      0.22      26      54 ..      60      87 ..      52     100 .. 0.87
   2 !    5.4   0.0    0.0086        12     132     159 ..     134     161 ..     101     185 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
      AAA_25 26 vkgllpagelallaGapgtGKttlaldla 54
                v+g+ p+g ++ ++G++ +GKttlal + 
  CCG91914.1 60 VGGF-PRGRIIEIYGPESSGKTTLALTVI 87
                5566.9*******************9875 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0086
      AAA_25 132 aleaaieevegvrlvviDplsralggde 159
                  +++++ + + v+++viD+++++++  e
  CCG91914.1 134 TIAETLIRSNAVDVIVIDSVAALTPRVE 161
                 35566666588**********9987744 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.2e-06    0.0085       5     104 ..      66     157 ..      64     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.2e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstssk.dllrellralglelkaerlsseellealeqalraravielliiDEaqh 102
                  +i+ ++G+  +GKTtl+ ++  q++        + + v v + ++  ++   +r+l  ++++ l ++++s ee l+  e  +r+ av  +++iD +  
  CCG91914.1  66 GRIIEIYGPESSGKTTLALTVIAQAQ--------KMGGVGVIIDVEHALDpHYCRKLGVNMNELLISQPDSGEEALTIAETLIRSNAV-DVIVIDSVAA 155
                 57999********************7........8888877666666333034677777777766669********************.******9998 PP

      AAA_22 103 lr 104
                 l+
  CCG91914.1 156 LT 157
                 85 PP

>> AAA_35  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.5e-05      0.02      30      70 ..      65     105 ..      63     114 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
      AAA_35  30 pGalirikapkkmGKtSLlarilakakqqgyktvsldlqla 70 
                 +G +i i +p+  GKt L  +++a+a++ g   v +d+++a
  CCG91914.1  65 RGRIIEIYGPESSGKTTLALTVIAQAQKMGGVGVIIDVEHA 105
                 599****************************9999999876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0     2e-05     0.028      22     140 ..      64     198 ..      53     203 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2e-05
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdg.gif...lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.......... 106
                 +r++++ ++G+  +GK++l+ ++  +++k g + +   ++   d +        + + l      + l ++++s   e++ +  e+ ++          
  CCG91914.1  64 PRGRIIEIYGPESSGKTTLALTVIAQAQKMGgVGViidVEHALDPH--------YCRKL-GVNMNELLISQPDS--GEEALTIAETLIRsnavdvivid 151
                 4559999*************99999999995455544555555555........66666.44555555555333..22222222222224445666666 PP

      AAA_16 107 ..............avpelagaeasrllellkrllallsrderplvlv 140
                                ++++ ga+a+ +  +l++l a++s+ ++++ ++
  CCG91914.1 152 svaaltprveiegqMGDAVVGAQARLMSSALRKLTAQISK-AKTVCIF 198
                 5555555555554444666666666666666666677776.5555555 PP

>> TK  Thymidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0001      0.14       2      90 ..      67     157 ..      66     201 .. 0.77
   2 ?   -1.9   0.0       1.9   2.7e+03     105     122 ..     320     337 ..     304     342 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
          TK   2 sielilgpmfaGKsteLlrrvkryqlaekkvvvi..kaakdnRyseg.kvvthdgisleakksktssleeikeeleeedvdvvlvDEaqFfe 90 
                  i  i+gp  +GK+t  l  + ++q+     v+i   +a d  y+ +  v   + ++ ++  s  ++l+  ++ +++++vdv+++D +  ++
  CCG91914.1  67 RIIEIYGPESSGKTTLALTVIAQAQKMGGVGVIIdvEHALDPHYCRKlGVNMNELLISQPD-SGEEALTIAETLIRSNAVDVIVIDSVAALT 157
                 56779******************99998877776226889*****9845555555555555.66666666777778889*******987766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.9
          TK 105 kivivagLdtdFerklFe 122
                  +v++a L++  ++k+F+
  CCG91914.1 320 DPVLCAKLEAATRGKVFG 337
                 689***********9997 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00012      0.17       8      42 ..      63      96 ..      61     252 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
                EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  8 lkegekvaivGenGaGKStLlkllagllkpteGei 42
                + +g+++ i G+  +GK+tL+ +++ + ++  G +
  CCG91914.1 63 FPRGRIIEIYGPESSGKTTLALTVIAQAQKMGG-V 96
                6789****************9999888876433.3 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00012      0.16       2      52 ..      47      99 ..      46     197 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
                BXSSTHHHHHH..CTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEE CS
                xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  2 lstgfkdLDkl..tsGlqkgdliiiAarpsmGktalalniaenaavkeklpva 52
                ++tg  ++D++  ++G+ +g +i i +  s Gkt+lal+++++a +   ++v+
  CCG91914.1 47 IPTGCLTIDRAlgVGGFPRGRIIEIYGPESSGKTTLALTVIAQAQKMGGVGVI 99
                678888888772257*************************9998876665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2304.26
//
Query:       CCG91915.1  [L=625]
Description: RNA polymerase sigma factor rpoD [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-28   97.8   1.2    2.8e-28   97.8   1.2    3.7  5  Sigma70_r3    Sigma-70 region 3
    3.5e-21   74.8   0.2    7.3e-21   73.7   0.2    1.6  1  Sigma70_r2    Sigma-70 region 2
    1.1e-20   72.8   8.6    1.7e-18   65.8   3.2    3.1  2  Sigma70_r4    Sigma-70, region 4
    1.7e-15   56.9   4.1    1.7e-15   56.9   4.1    2.7  3  Sigma70_r1_1  Sigma-70 factor, region 1.1
    1.1e-14   54.1   0.2    3.3e-14   52.6   0.2    1.8  1  Sigma70_r1_2  Sigma-70 factor, region 1.2
     0.0017   18.2   3.2        3.5    7.6   0.0    4.4  4  HTH_25        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.053   13.8   7.6        1.9    8.8   0.1    4.8  7  DUF2316       Uncharacterized protein conserved in bacteria (
      0.057   13.0   0.0      0.057   13.0   0.0    3.1  3  Exonuc_VII_L  Exonuclease VII, large subunit
       0.12   12.4   0.1        9.7    6.2   0.0    3.3  4  HTH_15        Helix-turn-helix domain of alkylmercury lyase
       0.13   12.0   6.3        7.8    6.3   0.0    4.4  4  Sigma70_r4_2  Sigma-70, region 4
       0.37   11.2   3.6       0.74   10.3   0.3    3.0  2  ACP_PD        Acyl carrier protein phosphodiesterase
        1.3    8.2  14.6        2.8    7.1   5.8    2.8  2  TMPIT         TMPIT-like protein
        3.7    8.0  14.8        0.5   10.8   0.8    4.3  3  Syntaxin_2    Syntaxin-like protein
          4    7.8  21.9       0.83   10.0   4.8    4.3  4  ABC_tran_CTD  ABC transporter C-terminal domain


Domain annotation for each model (and alignments):
>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.2     8e+03      43      67 ..       7      30 ..       6      37 .. 0.71
   2 ?   -1.5   0.0       2.1   2.7e+03      35      61 ..      87     110 ..      85     123 .. 0.71
   3 ?   -3.2   0.1       7.1   9.2e+03      30      46 ..     311     327 ..     309     332 .. 0.77
   4 !   97.8   1.2   2.2e-31   2.8e-28       1      77 [.     466     542 ..     466     543 .. 0.98
   5 ?   -1.3   0.0       1.9   2.4e+03      22      40 ..     580     598 ..     576     604 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.2
                HHXXXEETTXBSSSSTTXBSTTTXB CS
  Sigma70_r3 43 aarepvSldlpvgeeedtelgdlle 67
                 ++++vSl++  + + +++     +
  CCG91915.1  7 KTNDVVSLSSGCSTNNNGSSDP-SH 30
                5789999999999986665544.44 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.1
                 HHHHHHHHHHXXXEETTXBSSSSTTXB CS
  Sigma70_r3  35 ekVrevleaarepvSldlpvgeeedte 61 
                 ek+r+++++a+e + l +++ +e   +
  CCG91915.1  87 EKLRSLIKLAKEQTYLTYDDINE---A 110
                 78888999998888888877666...4 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 7.1
                 HTXXHHHHHHHHHHHXX CS
  Sigma70_r3  30 LglseekVrevleaare 46 
                 +++se+ ++evl++ +e
  CCG91915.1 311 VQVSESYYQEVLKLEKE 327
                 67899999999999887 PP

  == domain 4  score: 97.8 bits;  conditional E-value: 2.2e-31
                 XHHHHHHHHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHHHHHHHXXXEETTXBSSSSTTXBSTTTXBXSSSXXHHHC CS
  Sigma70_r3   1 EklnkikraqreLeqelgrePtpeEiAeeLglseekVrevleaarepvSldlpvgeeedtelgdlleddeaespeea 77 
                 E++nk+ r+q++L qelgrePtpeEiAee+++s++++r ++++a++p+Sl+ +vge+edt++gd++ed+ ae+p e+
  CCG91915.1 466 ETINKLMRVQKQLIQELGREPTPEEIAEETQMSVDRIRAIIKMAQHPISLQAQVGESEDTTFGDFIEDKAAENPSEM 542
                 89************************************************************************987 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 1.9
                 XHHHHHHHHTXXHHHHHHH CS
  Sigma70_r3  22 tpeEiAeeLglseekVrev 40 
                 t eE+ ++  ++ e++r++
  CCG91915.1 580 TLEEVGKQFRVTRERIRQI 598
                 779*************997 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.2   5.7e-24   7.3e-21       1      70 [.     387     456 ..     387     457 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 5.7e-24
                 HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                 +ve++l+lv ++a+++ ++g+++ Dl+Qe++++l++ave+f+  rg++fs+++++++r+a+ + + +++r
  CCG91915.1 387 MVEANLRLVISIAKKYSNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQAR 456
                 689**************************************************************99998 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.3    0.0009       1.2      18      44 ..     483     509 ..     471     511 .. 0.84
   2 !   65.8   3.2   1.4e-21   1.7e-18       1      50 []     555     608 ..     555     608 .. 0.98

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0009
                 TTT--HHHHHHHHTS-HHHHHHHHHHH CS
  Sigma70_r4  18 geglTleEIgerlgiSrerVrqiekrA 44 
                 g++ T eEI+e+ ++S  r+r i+k A
  CCG91915.1 483 GREPTPEEIAEETQMSVDRIRAIIKMA 509
                 556688*****************9865 PP

  == domain 2  score: 65.8 bits;  conditional E-value: 1.4e-21
                 HHHHS-HHHHHHHHHHH....TTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrf....geglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 +L++L+erer+v+e+rf    g ++TleE+g+++ ++rer+rqie++Alrk+R+
  CCG91915.1 555 VLHTLTERERTVIEQRFglldGYPRTLEEVGKQFRVTRERIRQIEAKALRKMRH 608
                 599**************************************************7 PP

>> Sigma70_r1_1  Sigma-70 factor, region 1.1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   4.1   1.3e-18   1.7e-15       3      72 ..      85     155 ..      84     162 .. 0.82
   2 ?   -1.8   0.1       2.6   3.4e+03      40      66 ..     256     283 ..     248     291 .. 0.56
   3 ?   -3.3   0.2       7.5   9.7e+03      34      72 ..     497     534 ..     487     540 .. 0.56

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 1.3e-18
                   HHHHHHHHHHHHHHHSCEEHHHHHHHGCCSS--HHHHHHHHHHHHCCT-EEE-SS-..........S-SSS CS
  Sigma70_r1_1   3 qkaavkeLikkgKkkGyLtyeEindaLpddeldseqiediiemLedmgIdvveeae.dedellleeeaeda 72 
                   +++++++Lik++K++ yLty++in+aL+d++ ++e+i+ ++++L  + I+++++++ d+ + +  ++ e++
    CCG91915.1  85 RQEKLRSLIKLAKEQTYLTYDDINEALSDSINNPEEIDAVLDFLRTLEIEIIDSSDvDNAKSAVVADIEES 155
                   699**************************************************999544443333333332 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.6
                   HHHHHHHHCCT-EEE-SS-......... CS
  Sigma70_r1_1  40 ediiemLedmgIdvveeaededell.le 66 
                   e  i+++e++  ++    e+++e + le
    CCG91915.1 256 ESYIAKIEELYAKIAKLPEKSKERKgLE 283
                   5555555555555555555444444444 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 7.5
                   --HHHHHHHHHHHHCCT-EEE-SS-.........S-SSS CS
  Sigma70_r1_1  34 ldseqiediiemLedmgIdvveeaededellleeeaeda 72 
                   ++ + i  ii+m  ++ I+++ +  +++++   +  ed+
    CCG91915.1 497 MSVDRIRAIIKM-AQHPISLQAQVGESEDTTFGDFIEDK 534
                   555555555543.55566666666666665555555554 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.2   2.6e-17   3.3e-14       1      30 [.     167     196 ..     167     198 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 2.6e-17
                   HHHHHHHHHHHHSX--THHHHHHHHHHHHC CS
  Sigma70_r1_2   1 DpvrlYLrEIGriPLLtaeEEveLAkriea 30 
                   Dpvr+YL+++G++PLLt+e+Eve++k+ie+
    CCG91915.1 167 DPVRMYLKQMGQVPLLTREQEVEISKKIEQ 196
                   9***************************97 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.9   2.5e+03       8      25 ..     347     364 ..     346     366 .. 0.83
   2 ?    3.3   0.1     0.058        75       6      30 ..     444     468 ..     442     472 .. 0.89
   3 ?    4.4   0.0     0.027        35      12      30 ..     487     505 ..     482     508 .. 0.90
   4 !    7.6   0.0    0.0027       3.5      12      45 ..     580     613 ..     578     620 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.9
                 TTT--HHHHHHHSS--HH CS
      HTH_25   8 arglsleevaketkIrkd 25 
                 +++l +e+++++++++ d
  CCG91915.1 347 QLSLKVEQLEHQIHLPLD 364
                 578999999999999876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.058
                 HHTTT--HHHHHHHSS--HHHHHHH CS
      HTH_25   6 RearglsleevaketkIrkdyleal 30 
                 R+a   s+ + a+ ++I+++++e +
  CCG91915.1 444 RQAITRSIADQARTIRIPVHMIETI 468
                 7788889***************987 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.027
                 -HHHHHHHSS--HHHHHHH CS
      HTH_25  12 sleevaketkIrkdyleal 30 
                 + ee+a+et++++d ++a+
  CCG91915.1 487 TPEEIAEETQMSVDRIRAI 505
                 779***************8 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0027
                 -HHHHHHHSS--HHHHHHHHCT--TTSS-HHHHH CS
      HTH_25  12 sleevaketkIrkdylealEeddfdalpepvylr 45 
                 +leev k+ ++  + ++++E+  + ++ +p+ lr
  CCG91915.1 580 TLEEVGKQFRVTRERIRQIEAKALRKMRHPTRLR 613
                 8***********************9999997665 PP

>> DUF2316  Uncharacterized protein conserved in bacteria (DUF2316)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.9   3.8e+03       3      33 ..      95     125 ..      91     135 .. 0.61
   2 ?   -2.6   0.0       5.1   6.5e+03      28      45 ..     217     234 ..     192     245 .. 0.68
   3 ?    8.8   0.1    0.0015       1.9       7      57 ..     274     324 ..     271     340 .. 0.86
   4 ?   -0.6   0.2       1.3   1.7e+03      27      68 ..     342     384 ..     324     394 .. 0.71
   5 ?   -2.7   0.0       5.5   7.1e+03      53      71 ..     439     457 ..     434     461 .. 0.85
   6 ?    5.3   0.0     0.018        23      25      83 ..     487     553 ..     464     557 .. 0.85
   7 ?   -3.0   0.0       6.9   8.8e+03      25      43 ..     580     598 ..     577     614 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.9
     DUF2316   3 LnkeerkaTkkeLqanfelsgltveevaedL 33 
                 L ke++  T ++++++++ s  + ee+ + L
  CCG91915.1  95 LAKEQTYLTYDDINEALSDSINNPEEIDAVL 125
                 5556666666666666655555555555444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.1
     DUF2316  28 evaedLnlttekvekvLe 45 
                 ++a++L+  +e++++v++
  CCG91915.1 217 NLAKKLGQGKERFDRVIQ 234
                 467777777777777765 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0015
     DUF2316   7 erkaTkkeLqanfelsgltveevaedLnlttekvekvLelkasrledvWil 57 
                 e+ + +k L+++f++++  +e++ e+L ++++ +e+  ++++s+ ++v  l
  CCG91915.1 274 EKSKERKGLEKEFQRAKSCLEKIFEKLYFKQKVIEDFVQVSESYYQEVLKL 324
                 566778999*********************************999999877 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.3
     DUF2316  27 eevaedLnlttekvekvLelkasr.ledvWilrdyLeekikeq 68 
                 e+  ++L l+ e++e+ ++l  +   ++   l+++L+e++k++
  CCG91915.1 342 EKEGKQLSLKVEQLEHQIHLPLDLfKKKHEELKQWLNEALKAK 384
                 4556778888888888887776552344557999999998876 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 5.5
     DUF2316  53 dvWilrdyLeekikeqgkt 71 
                   W +r+ + + i +q +t
  CCG91915.1 439 ATWWIRQAITRSIADQART 457
                 5799********9999876 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.018
     DUF2316  25 tveevaedLnlttekvekvLelkasr........ledvWilrdyLeekikeqgktpvpfsaLkgdkk 83 
                 t ee+ae+ +++ +++ +++++ ++           +     d++e+k  e+  + + +s L ++ +
  CCG91915.1 487 TPEEIAEETQMSVDRIRAIIKMAQHPislqaqvgESEDTTFGDFIEDKAAENPSEMTGYSLLREKIR 553
                 6799******************987777788877666678899999999999999999999998765 PP

  == domain 7  score: -3.0 bits;  conditional E-value: 6.9
     DUF2316  25 tveevaedLnlttekvekv 43 
                 t+eev ++  +t e++ ++
  CCG91915.1 580 TLEEVGKQFRVTRERIRQI 598
                 5678888888888888776 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   8.7         1   1.3e+03     144     223 ..     217     315 ..     174     407 .. 0.44
   2 ?   -2.0   0.1       1.6   2.1e+03     155     197 ..     463     504 ..     436     513 .. 0.57
   3 ?   13.0   0.0   4.5e-05     0.057     100     202 ..     508     605 ..     497     620 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1
  Exonuc_VII_L 144 eleeqleelerrlekaikrll....eekkqrleklasrlkspeellerkrqrldeleerlera..lkkqlkkkrerleelkerl.k........... 222
                   +l+++l + ++r+++ i+ +     ee  ++l +l +rl+s  +++e+   ++ +l e+ +++  l+k+++++++ le++ e+l             
    CCG91915.1 217 NLAKKLGQGKERFDRVIQDKHvecrEEYLTKLPELIERLESYIAKIEELYAKIAKLPEKSKERkgLEKEFQRAKSCLEKIFEKLyFkqkviedfvqv 313
                   4444444444444444443332111111111222222222222222222222222222222211122223333333333333332122222222211 PP

  Exonuc_VII_L 223 .e 223
                    e
    CCG91915.1 314 sE 315
                   10 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
  Exonuc_VII_L 155 rlekaikrlleekkqrleklasrlkspeellerkrqrldelee 197
                   ++ + i++l++ +kq +++l ++ ++pee+ e+ + ++d++++
    CCG91915.1 463 HMIETINKLMRVQKQLIQELGRE-PTPEEIAEETQMSVDRIRA 504
                   34445555555555555555433.3577777777777777655 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 4.5e-05
  Exonuc_VII_L 100 iaaskiPvisavGHEtDttiaDfvAdlrapTPtaaAelvvpdkaeleeqleelerrlekaikrll...eekkqrleklasrlkspeellerkrqrld 193
                    a+ +i + + vG   Dtt  Df+ d+ a+ P+++  + +  ++++++ l++l++r ++ i++++   +        + ++l++  ++++  r+r++
    CCG91915.1 508 MAQHPISLQAQVGESEDTTFGDFIEDKAAENPSEMTGYSL-LREKIRDVLHTLTERERTVIEQRFgllD-------GYPRTLEEVGKQFRVTRERIR 596
                   45668888899************************98877.5677777777777777666666653333.......333333333333333333333 PP

  Exonuc_VII_L 194 eleerlera 202
                   ++e++  r+
    CCG91915.1 597 QIEAKALRK 605
                   333333332 PP

>> HTH_15  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.9   6.3e+03      23      49 ..      89     115 ..      73     133 .. 0.64
   2 ?    6.2   0.0    0.0076       9.7      33      57 ..     483     507 ..     467     511 .. 0.80
   3 ?   -3.0   0.0       5.5   7.1e+03      50      63 ..     550     563 ..     542     565 .. 0.80
   4 ?    1.6   0.0      0.21   2.7e+02      30      55 ..     573     598 ..     570     603 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.9
      HTH_15  23 lrpLlrlLakGepVtveeLAaatgrsv 49 
                 lr+L +l  +    t +++ +a+  s+
  CCG91915.1  89 LRSLIKLAKEQTYLTYDDINEALSDSI 115
                 566666666666666666666666554 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0076
      HTH_15  33 GepVtveeLAaatgrsveevrqaLa 57 
                 G+  t ee+A++t  sv+++r++++
  CCG91915.1 483 GREPTPEEIAEETQMSVDRIRAIIK 507
                 6777889**************9875 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.5
      HTH_15  50 eevrqaLaalpstE 63 
                 e++r++L +l + E
  CCG91915.1 550 EKIRDVLHTLTERE 563
                 89999999998766 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.21
      HTH_15  30 LakGepVtveeLAaatgrsveevrqa 55 
                 L++G p t+ee+ ++   + e++rq+
  CCG91915.1 573 LLDGYPRTLEEVGKQFRVTRERIRQI 598
                 89**********************97 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.17   2.2e+02      31      47 ..     189     205 ..     187     206 .. 0.90
   2 ?    0.0   0.1      0.54   6.9e+02       2      16 ..     263     277 ..     262     278 .. 0.84
   3 ?    3.4   0.1     0.048        61      30      45 ..     489     504 ..     487     509 .. 0.81
   4 ?    6.3   0.0    0.0061       7.8       1      22 [.     549     570 ..     549     573 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.17
                   HHHHHHT--HHHHHHHH CS
  Sigma70_r4_2  31 EIAellgisegtVksrl 47 
                   EI+++++ se++Vks l
    CCG91915.1 189 EISKKIEQSEANVKSCL 205
                   9*************955 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.54
                   HHHHHHHTTS-HHHH CS
  Sigma70_r4_2   2 qalrealaeLperqr 16 
                   ++l++ +a+Lpe+ +
    CCG91915.1 263 EELYAKIAKLPEKSK 277
                   689999******976 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.048
                   HHHHHHHT--HHHHHH CS
  Sigma70_r4_2  30 kEIAellgisegtVks 45 
                   +EIAe++ +s+  ++ 
    CCG91915.1 489 EEIAEETQMSVDRIRA 504
                   8*********987775 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0061
                   HHHHHHHHTTS-HHHHHHHHHH CS
  Sigma70_r4_2   1 rqalrealaeLperqreifllr 22 
                   r+++r+ l +L+er+r++++ r
    CCG91915.1 549 REKIRDVLHTLTERERTVIEQR 570
                   689***************9865 PP

>> ACP_PD  Acyl carrier protein phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.1   1.4e+03       5      39 ..      75     111 ..      73     122 .. 0.72
   2 ?   10.3   0.3   0.00058      0.74       3     100 ..     209     301 ..     209     305 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.1
      ACP_PD   5 Larnwsey..saepLeefvqrvyaqlekneealPerl 39 
                 La+ w+ey   +e+L++ ++ +++q   +++ + e l
  CCG91915.1  75 LAKIWEEYpdRQEKLRSLIKLAKEQTYLTYDDINEAL 111
                 8999999955567788888777777666666555555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00058
      ACP_PD   3 hfLarnwseysaepLeefvqrvyaqlekneealPerlqrllprmieedwLesYaelegieralqrmarrlkrasklaeaieeleenyaeleadFleff 100
                 hf+a+++ ++  ++L +  +r+ + +++++ ++ e++ + lp++i  + LesY  ++ ie+  +++a+ ++++++ ++  +e+++ ++ le+ F++++
  CCG91915.1 209 HFIAKEYLNLA-KKLGQGKERFDRVIQDKHVECREEYLTKLPELI--ERLESY--IAKIEELYAKIAKLPEKSKERKGLEKEFQRAKSCLEKIFEKLY 301
                 99*******95.99*******************************..78***9..7899999999999999999999******************998 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   2.1     0.013        17      17      98 ..     186     268 ..     182     300 .. 0.79
   2 ?    7.1   5.8    0.0022       2.8       6     131 ..     305     442 ..     276     458 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.013
       TMPIT  17 takeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk.eeeeeeveelkeelkerkkvlkevesllpkknglylk 98 
                 ++ e+ +k+e+ ++  ++c ++ +   k++ +l ++l + k++ +   ++++ve  +e l +  + ++++es++ k + ly k
  CCG91915.1 186 QEVEISKKIEQSEANVKSCLHSFHFIAKEYLNLAKKLGQGKERFDrVIQDKHVECREEYLTKLPELIERLESYIAKIEELYAK 268
                 55678899999999999999999999999999999999999997744455555555666666666777777776666666655 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0022
       TMPIT   6 elekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk.......eeeeeeveelkeelkerkkvlk.......evesllp 90 
                 ++ ++f +++e+  +   kle+ ++  +k   + + ++k+ k+l+ ++++l+++++       +++ee  + l+e lk ++++++       ++++   
  CCG91915.1 305 KVIEDFVQVSESYYQEVLKLEKEKEVLEKSGLDPEAKEKEGKQLSLKVEQLEHQIHlpldlfkKKHEELKQWLNEALKAKSCMVEanlrlviSIAKKYS 403
                 566788888888888888999999999999999999999999999999999999778888886777777778999999999988876654444444444 PP

       TMPIT  91 kknglylklvlGnvnvsllnkqdkfkyKdeYekFklkltvi 131
                 ++   +l l+  + n+ l++  +kf+y+  Y kF  + t++
  CCG91915.1 404 NRGLSFLDLI-QEGNMGLMKAVEKFEYRRGY-KFSTYATWW 442
                 4444588876.5889**************99.687777776 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8   0.00039       0.5      20      99 ..     220     306 ..     201     331 .. 0.75
   2 ?   -1.1   0.4       1.9   2.4e+03      26      66 ..     343     383 ..     315     397 .. 0.68
   3 ?    4.8   0.4     0.028        36       5      59 ..     465     519 ..     463     597 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
  Syntaxin_2  20 kqLgtkkd.............teelreklhelieeinelikktnellkklsqldnsssdsqqklqkekLkkdfkealqeFqkiqrqyaekekq 99 
                 k+Lg  k+              ee+  kl elie++   i k++el  k+++l+++s+      ++  L k+f++a + ++ki ++   k+k 
  CCG91915.1 220 KKLGQGKErfdrviqdkhvecREEYLTKLPELIERLESYIAKIEELYAKIAKLPEKSK------ERKGLEKEFQRAKSCLEKIFEKLYFKQKV 306
                 5555554444444444555556778899****************************97......56777777777777777777766666654 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.9
  Syntaxin_2  26 kdteelreklhelieeinelikktnellkklsqldnsssds 66 
                 k+ ++l  k+++l ++i   +   +++ ++l+q+ n  ++ 
  CCG91915.1 343 KEGKQLSLKVEQLEHQIHLPLDLFKKKHEELKQWLNEALKA 383
                 55777777888888888777777777777777777776655 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.028
  Syntaxin_2   5 lqkinsnvstleklvkqLgtkkdteelreklhelieeinelikktnellkklsql 59 
                 + +in++++  ++l++ Lg     ee+ e+ + ++++i+ +ik  ++ ++  +q+
  CCG91915.1 465 IETINKLMRVQKQLIQELGREPTPEEIAEETQMSVDRIRAIIKMAQHPISLQAQV 519
                 7899999**********************************99888777655555 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.6   5.9e+03      26      54 ..     106     132 ..     103     135 .. 0.74
   2 ?   -2.4   0.2       4.6   5.9e+03      12      24 ..     189     201 ..     183     204 .. 0.71
   3 ?   10.0   4.8   0.00064      0.83      10      58 ..     245     294 ..     239     300 .. 0.68
   4 ?    6.3   2.7     0.009        11      15      57 ..     319     359 ..     303     361 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.6
  ABC_tran_CTD  26 eleaeladpelysdpeklaelsaeleele 54 
                   +++++l+d    ++pe++ ++   l +le
    CCG91915.1 106 DINEALSDSI--NNPEEIDAVLDFLRTLE 132
                   5788888776..88888888877777666 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.6
  ABC_tran_CTD  12 eleaeIeaLEeei 24 
                   e+ ++Ie+ E+  
    CCG91915.1 189 EISKKIEQSEANV 201
                   5788888888865 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00064
  ABC_tran_CTD  10 leeleaeIeaLEeeiaeleaeladpely.sdpeklaelsaeleeleaeLe 58 
                   l +l++ Ie+LE  ia++e+  a+ +   +++++ + l +e +++++ Le
    CCG91915.1 245 LTKLPELIERLESYIAKIEELYAKIAKLpEKSKERKGLEKEFQRAKSCLE 294
                   789*****************999876332333444445555555555555 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.009
  ABC_tran_CTD  15 aeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeL 57 
                   +e  +LE+e++ le+   dpe  +++++ ++ls + e+le+++
    CCG91915.1 319 QEVLKLEKEKEVLEKSGLDPE--AKEKEGKQLSLKVEQLEHQI 359
                   67789****************..99999************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1654  (0.0922528); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.50
# Mc/sec: 3730.00
//
Query:       CCG91916.1  [L=591]
Description: DNA primase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-36  124.6   0.0    6.1e-36  123.3   0.0    1.7  1  Toprim_N        DNA primase catalytic core, N-terminal domain
    3.3e-28   97.4   0.1    7.3e-28   96.3   0.1    1.5  1  zf-CHC2         CHC2 zinc finger
    6.1e-18   65.0   0.0    1.3e-17   64.0   0.0    1.6  1  Toprim_2        Toprim-like
    4.9e-15   55.8   0.1    1.1e-14   54.6   0.1    1.6  1  Toprim_4        Toprim domain
    1.5e-06   28.3   0.0    5.7e-06   26.4   0.0    2.1  1  DnaB_bind       DnaB-helicase binding domain of primase
    9.9e-06   25.7   0.1    2.5e-05   24.4   0.1    1.7  1  Toprim          Toprim domain
    1.3e-05   25.5   0.1    2.2e-05   24.7   0.1    1.4  1  Toprim_3        Toprim domain
    2.4e-05   24.9   1.3      5e-05   23.9   1.3    1.6  1  DnaG_DnaB_bind  DNA primase DnaG DnaB-binding
  ------ inclusion threshold ------
      0.051   12.9   1.0      0.073   12.4   0.3    1.7  2  ImcF-related_N  ImcF-related N-terminal domain
       0.12   12.2   2.4       0.33   10.8   0.1    2.5  2  HTH_ParB        HTH domain found in ParB protein


Domain annotation for each model (and alignments):
>> Toprim_N  DNA primase catalytic core, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.0   3.4e-39   6.1e-36       5     127 ..     131     253 ..     127     254 .. 0.96

  Alignments for each domain:
  == domain 1  score: 123.3 bits;  conditional E-value: 3.4e-39
                 HHHCSCHHHHHHHHHCTT--HHHHHHCT-EEE-SHSCHHHHHHHHCT-HHHHHCCTTCEECSTTT-EEETTTTEEEEEEE-TTS-EEEEEEEESSS-SS CS
    Toprim_N   5 elkseegekaleYLkkRglseetiekFqlGyapkswdnllkllkkkkvseeelleagllskkekgklydrFrnRimfPikdakgkvvgFgGRaleeeek 103
                  l++ ege  ++YLk+Rg++ et+++F+lGyap+ wd ll+ +++k+   e l+ agl+++ e++k+ydrFr R++f i d++gk+vgF+GR + +++ 
  CCG91916.1 131 LLEEPEGEVGRAYLKERGINLETARTFGLGYAPALWDGLLRWASEKSGFLELLEPAGLVVRAENSKIYDRFRGRLIFRISDETGKIVGFSGRLIGSDQG 229
                 678888999************************************99999************************************************* PP

                 .SEEE--SBTTB-CCC-EETHHHH CS
    Toprim_N 104 aKYlNspetelFkKselLYgldea 127
                 +KYlNspe+ +F+K+++LYgl+ a
  CCG91916.1 230 PKYLNSPESLIFSKGKILYGLNVA 253
                 ********************9876 PP

>> zf-CHC2  CHC2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.1   4.1e-31   7.3e-28       3      94 ..       7      98 ..       6     101 .. 0.97

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 4.1e-31
     zf-CHC2  3 eevidelkeridivdvveeyvkLkkkgkdyvalCPFHeektpsftvspekqfyyCfgCgagGdaikFlmeieklsfveaveklakklglele 94
                +e+++++++  div+vv+eyv Lkk+g+++++l PF +ektpsf v p+kq+++Cf+ g gG +++F+m +ekl+f  a++ la+++g+ ++
  CCG91916.1  7 KEFVERVRKANDIVEVVSEYVVLKKAGAKFKSLSPFKKEKTPSFFVDPQKQLFKCFSSGYGGTVFDFIMYYEKLDFLGALKYLAQRAGIAFP 98
                5899***********************************************************************************99876 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   7.1e-21   1.3e-17       1      89 [.     264     348 ..     264     349 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 7.1e-21
    Toprim_2   1 vvfEgaiDalSlaqlgikektnvvalgGtalteaalkllerypekkvvlalDnDkaGrkaakrlaellreagvrekirelpegkDwnel 89 
                 +++Eg iD++ l++ g++    +va+ Gtalt++++ ll+r    +v++a+D D+aG++aa r+ ++l e+g+++k+++lp+g+D++ l
  CCG91916.1 264 ILCEGHIDLIRLHASGFP---TAVATQGTALTDHQAALLKRF-CSEVIVAYDGDRAGEDAAVRALDILLEEGFEVKVAQLPSGEDPDSL 348
                 69***************9...*********************.878****************************************976 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.1   6.2e-18   1.1e-14       2      87 ..     262     336 ..     261     338 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 6.2e-18
    Toprim_4   2 eiiiVEgyaDvlalekagiknvvavlggalspldgirpeklktenlveaekkvkevilaldgDaeGeataerlaellleegvkvtr 87 
                 ++i++Eg  D++ l+ +g++++va+ g+al + ++++++k++           +evi+a+dgD +Ge +a r+++ lleeg+ v++
  CCG91916.1 262 KAILCEGHIDLIRLHASGFPTAVATQGTAL-TDHQAALLKRFC----------SEVIVAYDGDRAGEDAAVRALDILLEEGFEVKV 336
                 789***************************.999999777777..........**********************88899999987 PP

>> DnaB_bind  DnaB-helicase binding domain of primase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   3.2e-09   5.7e-06       3      56 .]     370     423 ..     368     423 .. 0.96

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 3.2e-09
                 HHHHHTTTT--TTSHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHT--HH CS
   DnaB_bind   3 FlierllegydlstpegkaravrealpllaripdpieRdlYirrlAerlgidee 56 
                 F+++ ++ +y+ +t+ gk++ ++++++l+ +i+dpi R++   ++A r+g++ e
  CCG91916.1 370 FVLNKASIEYCPQTAVGKSKIAEKMARLIVKINDPIRRHVASLEVAARIGVSVE 423
                 999***********************************************9975 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   1.4e-08   2.5e-05       2     101 ..     263     337 ..     262     339 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.4e-08
                 EEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHSTTEEEEEECTTTHHHHHHHHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHTHHHTTTEEEEEE CS
      Toprim   2 lvivEgpsdaktiakalgsgfqavtaslGhildletefkpvyeeiedkkkvlkalkelakradeiilatDpDreGeaiawellevlkellenkigrvef 100
                  +++Eg  d + ++     gf +++a++G++l+  +                   + l++ ++e+i+a+D+Dr+Ge +a ++l+ l     ++++ v++
  CCG91916.1 263 AILCEGHIDLIRLHAS---GFPTAVATQGTALTDHQ------------------AALLKRFCSEVIVAYDGDRAGEDAAVRALDILL----EEGFEVKV 336
                 5899************...9****************..................*****************************6544....33566666 PP

                 S CS
      Toprim 101 s 101
                 +
  CCG91916.1 337 A 337
                 5 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   1.2e-08   2.2e-05       2      94 ..     263     354 ..     262     355 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.2e-08
    Toprim_3   2 liivEGietaLsi.leartgaaviAllsa..anlkaiawpergkrvviaaDnDaandGreaaeklaerleaagieavllepaegeDwndvlqkeGa 94 
                 +i++EG ++ + + ++  ++  ++A  ++  ++ +a  +++   +v++a D+D a  G+ aa ++ + l ++g+e+ ++  ++geD ++++ k G+
  CCG91916.1 263 AILCEGHIDLIRLhASGFPT--AVATQGTalTDHQAALLKRFCSEVIVAYDGDRA--GEDAAVRALDILLEEGFEVKVAQLPSGEDPDSLIAKGGR 354
                 5899*****99994333333..344444411444455555799************..************************************997 PP

>> DnaG_DnaB_bind  DNA primase DnaG DnaB-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   1.3   2.8e-08     5e-05       4     117 ..     460     575 ..     457     583 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.8e-08
  DnaG_DnaB_bind   4 alallLqhPelagelpdalaleaf.edpglallreliealaaepelntaaLlerlrgtpeeallaeLaveelqveeeeelerefadalarLqeql 97 
                      +  l+++Pe   + ++al++ea  e+pg +ll++l ++ a +++ +t+  le l + + +++++ L + + +++ +  +e+ f  + +rL   +
      CCG91916.1 460 TIWFLIENPEYMPRFKEALPEEALrEVPGGELLAKLYRVDAIREQKGTSDFLEMLSQEERKRVVSFLFQLQQEQQGDYSKEEHFLMLKERLSSLW 554
                     56679*****************888***********9999888889*********************999999999889**************** PP

  DnaG_DnaB_bind  98 verriaeLkaklr.qgLseeE 117
                      ++ri+++  +   ++Ls+eE
      CCG91916.1 555 CQHRIEKIRLQIAsEKLSSEE 575
                     *******999999999*7776 PP

>> ImcF-related_N  ImcF-related N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.6   4.7e+03     108     125 ..     104     123 ..      90     138 .. 0.51
   2 ?   12.4   0.3   4.1e-05     0.073      79     134 ..     505     559 ..     495     590 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.6
  ImcF-related_N 108 eaeael..fdeefeeLlerl 125
                     +++ae+  +++++ +L++ +
      CCG91916.1 104 SEKAEKlsIQQRLWDLHRAV 123
                     33333333444444444444 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 4.1e-05
  ImcF-related_N  79 aGFeeffsdltkeereqvlGftfpleeekeaeaelfdeefeeLlerlearllerle 134
                     +G ++f + l++eer++v+ f f+l++e++ + +  +e+f  L erl+++ ++   
      CCG91916.1 505 KGTSDFLEMLSQEERKRVVSFLFQLQQEQQGDYS-KEEHFLMLKERLSSLWCQHRI 559
                     68899*************************8886.899999999999999887654 PP

>> HTH_ParB  HTH domain found in ParB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00018      0.33       4      51 ..     382     430 ..     381     431 .. 0.94
   2 ?    0.3   0.2      0.35   6.3e+02      31      46 ..     561     576 ..     556     582 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
    HTH_ParB   4 qeavsegkiseGHARaLlslkde.elqlqlaekiieegLsVRetEklvr 51 
                 q+av + ki e+ AR +++++d+    ++ +e +++ g sV+  Ek + 
  CCG91916.1 382 QTAVGKSKIAEKMARLIVKINDPiRRHVASLEVAARIGVSVEAFEKKIE 430
                 78999******************9999*******************986 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.35
    HTH_ParB  31 qlaekiieegLsVRet 46 
                 ++  +i++e+Ls++e+
  CCG91916.1 561 KIRLQIASEKLSSEEI 576
                 566799*******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4327.57
//
Query:       CCG91917.1  [L=373]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-12   45.7   0.0    2.4e-11   44.3   0.0    1.6  1  DUF362         Domain of unknown function (DUF362)
  ------ inclusion threshold ------
      0.047   13.8   0.0       0.24   11.5   0.0    2.1  2  Tautomerase_2  Tautomerase enzyme
      0.076   13.3   0.1       0.41   10.9   0.1    2.0  2  Tctex-1        Tctex-1 family
      0.097   13.2   0.0       0.16   12.5   0.0    1.3  1  Ribosomal_S9   Ribosomal protein S9/S16


Domain annotation for each model (and alignments):
>> DUF362  Domain of unknown function (DUF362)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   5.3e-15   2.4e-11       1     201 [.      81     325 ..      81     326 .. 0.73

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 5.3e-15
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx.xx.....xxxxxxxxx.................................. RF
      DUF362   1 VaiKpNlgeagnpegatthpevvravvellkeaga..gkiivgdspgl.yv.....srgkahrev.................................. 57 
                 V iK+N    g +  + t+ ++v a+ve l eag+  ++iiv d     ++     +                                          
  CCG91917.1  81 VGIKINAS--GGTI-MSTRKALVNAIVESLMEAGVpsQHIIVWDKYEDdLYnanylP-------Ltedsrylvksvipqtgfdpkvfyvneilgkliwg 169
                 789***99..7776.68***********99899977999******995432223330.......03333666777788888888889999999999999 PP

                 ...........xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
      DUF362  58 ...........aeeagydelaega.diadglegedevvvpvk..gkhlkkelkiaka.vleaDviInlpklKgHalagvtgalKn.lfGcisgsgkaei 140
                            +e+         a d +d+  + +e+ vpv+  +++++++   ak   + +  iIn+p++      g+ g+l   + G++ ++++ + 
  CCG91917.1 170 dmlfqglkpspFEKKQ-------AsDSEDNVAKLYEKGVPVSslERRVSNKSFYAKIvTQLCSKIINVPVFCDNPNIGLNGCLASlALGMVDNTRRFQG 261
                 9886664444433333.......33444444444444445545544555554455552357999***************************98865555 PP

                 xxxxxxxxxxx.xxxxxxxx.x.xxx..xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx RF
      DUF362 141 Hskrdsekfae.kiadlaka.l.kpd..lnvvdgikamegegpsggs...kelglvlaStDpvalDaaa 201
                        +  + +ia++++  + +++  l v+d+++a+  +gp++++   + +g +  StDpva+D+++
  CCG91917.1 262 EG-----VWGDpAIAEILDQpIvRKKviLHVMDALIAGYAGGPQFSPeyaVVTGSIYLSTDPVAIDSIV 325
                 43.....333339******9768444458********999*****99999999*************986 PP

>> Tautomerase_2  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.3e-05      0.24      26      69 ..      77     119 ..      66     123 .. 0.93
   2 ?   -1.8   0.0      0.78   3.5e+03      45      58 ..     212     225 ..     207     227 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.3e-05
                    -TT-EEEEEEEES---HHHHHHHHHHHHHHHHHHH---GGGEEE CS
  Tautomerase_2  26 sddlvvieitlsegRseeqKkaLyralaerlaaklgirpeDvfi 69 
                    s+d+v i+i++s g    ++kaL++a++e l + +g++ +++++
     CCG91917.1  77 SKDVVGIKINASGGTIMSTRKALVNAIVESLME-AGVPSQHIIV 119
                    899****************************77.*******998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.78
                    HHHHHHHHHHHHHH CS
  Tautomerase_2  45 KkaLyralaerlaa 58 
                     k++y++++++l +
     CCG91917.1 212 NKSFYAKIVTQLCS 225
                    579******99976 PP

>> Tctex-1  Tctex-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   9.2e-05      0.41       5      99 ..      47     146 ..      45     148 .. 0.76
   2 ?   -0.9   0.0      0.42   1.9e+03      10      34 ..     206     229 ..     203     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.2e-05
                 HHHHHHHHHHCTSSS--CCCHHHHHHHHHHHHHHHHHHHTS.SS.....SCEEEEEEEEEETTTS-EEEEEEEES-TTT-EEEEEEE...CTTSEEEEE CS
     Tctex-1   5 iakealesalesaesYdhekveqwnstiinsilkalksestele...lpryKfivnvtivqkkgqgmhsasgaywdektDgmvsfky...enkgldvvv 97 
                 i+k +++sal++ +  +++  e w+s    s ++ +  + + ++   +++ K  vn ++ +  ++g+ s+   +wd+  D++++++y   ++++ ++v 
  CCG91917.1  47 IVKAMFQSALKTYT-QKSSSREAWSSFFHISSKDVVGIKINASGgtiMSTRKALVNAIVESLMEAGVPSQHIIVWDKYEDDLYNANYlplTEDSRYLVK 144
                 78888889998875.566666788876665555554433333335789999*******999999***********************998777777777 PP

                 EE CS
     Tctex-1  98 tv 99 
                 +v
  CCG91917.1 145 SV 146
                 76 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.42
                 HHHHHCTSSS--CCCHHHHHHHHHH CS
     Tctex-1  10 lesalesaesYdhekveqwnstiin 34 
                 le ++++++ + ++ v q++s+iin
  CCG91917.1 206 LERRVSNKS-FYAKIVTQLCSKIIN 229
                 566777876.446788999999997 PP

>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.5e-05      0.16      24     100 ..      54     140 ..      28     146 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.5e-05
                   EECCHHSTTSCHHHHHCHHHHHTTTSSSEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHH.........HHHHHHCTCCC..TS-B-- CS
  Ribosomal_S9  24 ksleeYfkeeaarekvleplkltgllgkfdvfvkvkgGGlsgqaeAirlgiaraLvalek.........eekkeLkkagl..ltrDpR 100
                     l++Y ++  +re+  + +++ ++ + + ++++ +gG +++  +A+  +i + L++            ++++ L +a++  lt+D+R
    CCG91917.1  54 SALKTYTQKSSSREAWSSFFHISSK-DVVGIKINASGGTIMSTRKALVNAIVESLMEAGVpsqhiivwdKYEDDLYNANYlpLTEDSR 140
                   5678899999999999998888886.88****************************98533334444423366666666522466666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2326.05
//
Query:       CCG91918.1  [L=261]
Description: Predicted pyrophosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-39  131.6   3.3    1.1e-28   99.2   0.7    2.5  2  MazG           MazG nucleotide pyrophosphohydrolase domain
    1.6e-11   44.5   0.1    6.4e-05   23.3   0.0    2.4  2  PRA-PH         Phosphoribosyl-ATP pyrophosphohydrolase
    2.3e-07   31.0   2.9    0.00039   20.6   0.2    2.6  2  MazG-like      MazG-like family
  ------ inclusion threshold ------
      0.038   14.5   0.1      0.038   14.5   0.1    2.6  3  Spectrin       Spectrin repeat
      0.047   14.6   0.0         23    5.9   0.0    2.9  3  Cytochrom_C_2  Cytochrome C'
       0.09   13.5   0.2       0.29   11.8   0.0    1.9  3  Bro-N          BRO family, N-terminal domain
       0.16   11.9   0.1         15    5.4   0.0    2.3  2  CemA           CemA family
       0.26    9.6   0.0       0.37    9.1   0.0    1.1  1  Phytoreo_S7    Phytoreovirus S7 protein
       0.59   10.9   3.1         13    6.6   0.2    2.9  3  DUF5327        Family of unknown function (DUF5327)
        4.2    7.5   9.8        8.5    6.5   0.3    3.4  4  DUF4363        Domain of unknown function (DUF4363)


Domain annotation for each model (and alignments):
>> MazG  MazG nucleotide pyrophosphohydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.7   6.1e-32   1.1e-28       1      74 []      34     107 ..      34     107 .. 0.99
   2 !   32.5   0.1   4.1e-11   7.3e-08       7      70 ..     171     230 ..     165     233 .. 0.90

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 6.1e-32
                 --HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-GGGG CS
        MazG   1 qtpetllaylleEvgEvaeaIkkedrdeleeELGDvLlqvlflaniaeeeggidledvaetileKlerRhphvf 74 
                 qt+++l+a l+eE++E++eaI++ed+ +++eELGD+Ll+v+f+a+ia+eeg++++ +v+e +++Kl+rRhphvf
  CCG91918.1  34 QTHKSLKAKLIEECYELIEAIDSEDMASMKEELGDILLHVFFHAQIAQEEGNFSFLEVLEDLCTKLIRRHPHVF 107
                 89***********************************************************************8 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 4.1e-11
                 HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH- CS
        MazG   7 laylleEvgEvaeaIkkedrdeleeELGDvLlqvlflaniaeeeggidledvaetileKlerRh 70 
                 l+ + eE +E+ ea k +d +++++E+GD+++ ++++a+    ++gid e++++  l  +e+R+
  CCG91918.1 171 LLKMEEELQEIKEAYKGKDLEKIKKEIGDLIFSAINFAR----WLGIDPEEAIKDSLLTFEKRC 230
                 66789**********************************....6*********99998888886 PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   9.5e-07    0.0017      20      61 ..      31      73 ..      19      83 .. 0.83
   2 !   23.3   0.0   3.6e-08   6.4e-05      27      76 ..     170     219 ..     150     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 9.5e-07
                -HHHHHH.HHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHH CS
      PRA-PH 20 taelasl.raaligEEavElleaasegdlaeladelaDllYvt 61
                + e+ ++ + a++ EE  El+ea   +d+a + +el D+l ++
  CCG91918.1 31 DREQTHKsLKAKLIEECYELIEAIDSEDMASMKEELGDILLHV 73
                4444444699*****************************9776 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 3.6e-08
                 HHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHCT--CHHHH CS
      PRA-PH  27 raaligEEavElleaasegdlaeladelaDllYvtygllvllGidldavf 76 
                 ++ +++EE++E  ea + +dl+++ +e+ Dl++ ++  +  lGid+++ +
  CCG91918.1 170 PLLKMEEELQEIKEAYKGKDLEKIKKEIGDLIFSAINFARWLGIDPEEAI 219
                 5669******************************************9865 PP

>> MazG-like  MazG-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.2   0.00035      0.62      10      45 ..      38      73 ..      34     103 .. 0.90
   2 !   20.6   0.2   2.2e-07   0.00039      16      68 ..     178     228 ..     168     242 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00035
   MazG-like 10 lLkaellksveelfkallkgseeeildeLAdviiyl 45
                 Lka l+++  el++a+ +++ +++++eL d+++ +
  CCG91918.1 38 SLKAKLIEECYELIEAIDSEDMASMKEELGDILLHV 73
                59*************9999*************9865 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 2.2e-07
   MazG-like  16 lksveelfkallkgseeeildeLAdviiylylLAdrlGidfee.ideklkkklk 68 
                 l++++e++k    ++ e+i+ e+ d+i +++ +A+ lGid+ee i++ l   +k
  CCG91918.1 178 LQEIKEAYK---GKDLEKIKKEIGDLIFSAINFARWLGIDPEEaIKDSLLTFEK 228
                 344444444...599******************************998876665 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   2.1e-05     0.038      43     103 ..      72     136 ..      42     138 .. 0.80
   2 ?   -0.1   0.1      0.72   1.3e+03      17      38 ..     174     195 ..     158     200 .. 0.65
   3 ?   -2.3   0.0       3.5   6.3e+03      15      36 ..     235     249 ..     222     259 .. 0.41

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHHHHHHH...HHHHHHHHTT.HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  43 hkaleaelaaqqervkaln...elaeklldeg.hsaseeieerleelnerWeeLkelaaerkqkL 103
                 h  ++a++a++++++  l+   +l +kl+ ++ h    e  ++++e++++We++k++ + ++++L
  CCG91918.1  72 HVFFHAQIAQEEGNFSFLEvleDLCTKLIRRHpHVFGTESATTTDEVHKHWEKIKKAEKPHRESL 136
                 667999********98777777******55555************************99999888 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.72
                 HHHHHHHHCCSSCSSSHHHHHH CS
    Spectrin  17 ieekeellssedlgkdleevqa 38 
                 +ee  +++++  +gkdle++++
  CCG91918.1 174 MEEELQEIKEAYKGKDLEKIKK 195
                 3444444444445666666654 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.5
                 HHHHHHHHHHCCSSCSSSHHHH CS
    Spectrin  15 eWieekeellssedlgkdleev 36 
                 + +++k + +       ++ee+
  CCG91918.1 235 KELKDKANPV-------SPEEL 249
                 3333333333.......33333 PP

>> Cytochrom_C_2  Cytochrome C'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.013        23      70     108 ..      30      68 ..      28      71 .. 0.95
   2 ?   -0.7   0.0       1.4   2.5e+03      47      76 ..     101     128 ..      79     137 .. 0.64
   3 ?    4.9   0.0     0.027        48      82     109 ..     173     200 ..     150     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.013
                    HHTHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHHHHHHH CS
  Cytochrom_C_2  70 WedkekfkakaaaleeaaaeLaaaakagdlaalkaafgk 108
                    W+++++ k+ +a+l e+  eL +a +++d+a++k+++g+
     CCG91918.1  30 WDREQTHKSLKAKLIEECYELIEAIDSEDMASMKEELGD 68 
                    999999*****************************9987 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.4
                    CSGGGGC-TTGSSSSS--B-THHHHTHHHH CS
  Cytochrom_C_2  47 kklpalFpegsdkgektkakpeiWedkekf 76 
                    ++ p++F+++s++   t+   + We+ +k 
     CCG91918.1 101 RRHPHVFGTESAT--TTDEVHKHWEKIKKA 128
                    4556666666666..344444445544433 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.027
                    HHHHHHHHHHHHHHCTSHHHHHHHHHHH CS
  Cytochrom_C_2  82 aleeaaaeLaaaakagdlaalkaafgkv 109
                    ++ee+ +e+++a k +dl+++k+++g++
     CCG91918.1 173 KMEEELQEIKEAYKGKDLEKIKKEIGDL 200
                    7999*******************99986 PP

>> Bro-N  BRO family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.2   1.3e+04      69      80 ..      46      57 ..      34      64 .. 0.75
   2 ?   -3.0   0.0       7.1   1.3e+04      38      38 ..     120     120 ..      91     137 .. 0.58
   3 ?   11.8   0.0   0.00016      0.29       5      45 ..     193     235 ..     189     255 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.2
       Bro-N 69 glyeLilrsrkp 80
                 +yeLi +++++
  CCG91918.1 46 ECYELIEAIDSE 57
                578888777655 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.1
       Bro-N  38 k 38 
                 k
  CCG91918.1 120 K 120
                 2 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00016
       Bro-N   5 vtdengepwfvakdvakiLgysnpskaikkhvdkdnkkkl...e 45 
                 +++e g++ f+a  +a+ Lg+ +p++aik+ + + +k++    +
  CCG91918.1 193 IKKEIGDLIFSAINFARWLGI-DPEEAIKDSLLTFEKRCRfveK 235
                 56688999************9.555*******998888873322 PP

>> CemA  CemA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0083        15      79     134 ..      34      89 ..      19     101 .. 0.84
   2 ?    4.8   0.0     0.013        24      80     120 ..     166     207 ..     109     247 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0083
        CemA  79 lseeeieeelkekaeelakeyreesseaiknifadlvsliafvvllllskeeleil 134
                  ++++++ +l e+  el + +++e + ++k+ + d++  + f + +++++ +   l
  CCG91918.1  34 QTHKSLKAKLIEECYELIEAIDSEDMASMKEELGDILLHVFFHAQIAQEEGNFSFL 89 
                 466778889999999***************************99999887765544 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.013
        CemA  80 seeeieeelkekaeelakeyreesseaiknifadlvsl.iaf 120
                 s+e    +++e+ +e+++ y+ +  e ik+ + dl++  i f
  CCG91918.1 166 SPEGPLLKMEEELQEIKEAYKGKDLEKIKKEIGDLIFSaINF 207
                 45556678999********************99987540444 PP

>> Phytoreo_S7  Phytoreovirus S7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00021      0.37     276     316 ..      98     138 ..      91     142 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00021
  Phytoreo_S7 276 alisrygdvfideeevfsdeereklsklkrtdpdkdeklyk 316
                   li r++ vf  e+++ +de +++++k+k+++  + e l+ 
   CCG91918.1  98 KLIRRHPHVFGTESATTTDEVHKHWEKIKKAEKPHRESLFD 138
                  5899****************************999999996 PP

>> DUF5327  Family of unknown function (DUF5327)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.045        80      75      98 ..     115     138 ..      36     138 .. 0.82
   2 ?    6.6   0.2    0.0074        13       9      28 ..     171     190 ..     169     200 .. 0.71
   3 ?   -3.4   0.0       9.7   1.7e+04      89      99 .]     216     226 ..     214     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.045
     DUF5327  75 qteevkkekkleeeddangdSLfD 98 
                 ++e  k+ +k+++ +++  +SLfD
  CCG91918.1 115 TDEVHKHWEKIKKAEKPHRESLFD 138
                 56667788999999*********9 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0074
     DUF5327   9 lekmeeelekakkaeseakv 28 
                 l kmeeel+++k+a + + +
  CCG91918.1 171 LLKMEEELQEIKEAYKGKDL 190
                 67**********66554443 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 9.7
     DUF5327  89 ddangdSLfDF 99 
                 ++a +dSL+ F
  CCG91918.1 216 EEAIKDSLLTF 226
                 678899*9987 PP

>> DUF4363  Domain of unknown function (DUF4363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3     0.058     1e+02      13      39 ..      42      68 ..      33      71 .. 0.77
   2 ?    2.6   0.0     0.082   1.5e+02      32      49 ..     110     127 ..      90     130 .. 0.85
   3 ?    6.5   0.3    0.0047       8.5      13      40 ..     173     200 ..     171     203 .. 0.92
   4 ?   -3.0   0.0       4.5     8e+03      38      47 ..     247     256 ..     220     260 .. 0.56

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.058
     DUF4363 13 elsekleeleeaienedweeakeklee 39
                +l e++ el+eai++ed ++ ke+l +
  CCG91918.1 42 KLIEECYELIEAIDSEDMASMKEELGD 68
                677888888888888888888888765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.082
     DUF4363  32 eakekleelekeWekkkk 49 
                 e++ +++e++k+Wek kk
  CCG91918.1 110 ESATTTDEVHKHWEKIKK 127
                 6788999********987 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0047
     DUF4363  13 elsekleeleeaienedweeakekleel 40 
                 +++e+l+e++ea++ +d e+ k+++ +l
  CCG91918.1 173 KMEEELQEIKEAYKGKDLEKIKKEIGDL 200
                 699********************99887 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 4.5
     DUF4363  38 eelekeWekk 47 
                 eel   We  
  CCG91918.1 247 EELDRLWERA 256
                 4445555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1022  (0.0570026); expected 358.6 (0.02)
Passed bias filter:                      731  (0.0407719); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1835.85
//
Query:       CCG91919.1  [L=59]
Description: hypothetical protein MFUM_270016 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 429.95
//
Query:       CCG91920.1  [L=250]
Description: Predicted deacylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-14   54.1   0.0    1.5e-14   53.7   0.0    1.1  1  AstE_AspA      Succinylglutamate desuccinylase / Aspartoacyla
    1.5e-08   34.4   0.0    2.1e-08   33.9   0.0    1.1  1  DUF2817        Protein of unknown function (DUF2817)
    5.1e-06   26.1   0.0      0.002   17.6   0.0    2.1  2  Peptidase_M99  Carboxypeptidase controlling helical cell shap
    7.7e-05   22.6   0.0    0.00061   19.7   0.0    2.0  2  Peptidase_M14  Zinc carboxypeptidase


Domain annotation for each model (and alignments):
>> AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   3.4e-18   1.5e-14       2      73 ..      49     119 ..      48     146 .. 0.92

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 3.4e-18
                 S-EEEEEE-SSTT-HHHHHHHHHHHHHHHCCCESCCEEEEEESSHHHHHCTSSSSSTT-S-CTTTTTCCCCC CS
   AstE_AspA   2 gpkvlisAGvHGnElaGvellrqllkqleeadilgeitlvplaNppAiaagsRyipidredLNRaFpgrslg 73 
                 ++ v++sAG+HG+E aGv +l ++l++ + a+   + t++pl+Np +++++sR  + +  dLNRaF + +l 
  CCG91920.1  49 AKHVYLSAGIHGDEPAGVLALIEWLENFSTASYNYQFTVIPLINPWGLKHNSRLNE-QGIDLNRAFHKVDLS 119
                 689*****************************************************.*********986665 PP

>> DUF2817  Protein of unknown function (DUF2817)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   4.7e-12   2.1e-08      50     122 ..      48     117 ..      35     124 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 4.7e-12
     DUF2817  50 akklLvltsGthGveGfaGSavqvalLrealakllaegvavLlvhalNPyGfahlrrvnedNVDLnRNfldfs 122
                 ++k + l++G+hG e  aG  + +++L++   +++  + +  ++  +NP+G++h+ r ne+ +DLnR f +++
  CCG91920.1  48 SAKHVYLSAGIHGDE-PAGVLALIEWLENF--STASYNYQFTVIPLINPWGLKHNSRLNEQGIDLNRAFHKVD 117
                 45678899*****87.79**********95..77777888888999***********************8654 PP

>> Peptidase_M99  Carboxypeptidase controlling helical cell shape catalytic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.4e-07     0.002      34     101 ..      47     118 ..      18     155 .. 0.75
   2 !    6.7   0.0   0.00097       4.3     206     248 ..     207     249 ..     200     250 .] 0.86

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.4e-07
                    GSS-EEEEE--SSTT-HHHHHHHHHHHHHEEE-..SSEEEEES-STHHHHHTT-S-TTS..-GGG-SSS--T CS
  Peptidase_M99  34 dkaphllllagiqgdepggfnaanlflmhyevk..kglvevvpvlnkpsilrnhrglyd..dmnrkfaaldk 101
                      a h+ l agi gdep g  a   +l  ++    + +  v+p +n   +  n r   +  d+nr f  +d 
     CCG91920.1  47 PSAKHVYLSAGIHGDEPAGVLALIEWLENFSTAsyNYQFTVIPLINPWGLKHNSRLNEQgiDLNRAFHKVDL 118
                    5689*******************99**9999862245789******88887777743322399999988774 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00097
                    SHHHHHHHTT-EEEEEEEETTS-HHHHHHHHHHHHHHHHHHHT CS
  Peptidase_M99 206 altfyaikqkksafaneaskelslekrvfyhllaiegllnqln 248
                    a+ fy     k  ++ e+  e  ++krv  hllai+  l+ ln
     CCG91920.1 207 AIYFYFQLGCKKIYTIETPSEWDIAKRVQAHLLAIDTALSLLN 249
                    6677777777889999********************9998776 PP

>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.4e-07   0.00061      41     137 ..      44     116 ..      25     123 .. 0.85
   2 ?    0.5   0.0     0.098   4.4e+02     205     266 ..     162     226 ..     120     237 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.4e-07
                    STTST-CEEEEEE-SSTT-HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHEEEEEES-STHHHHHHHHHT-TTTTST-SBCTTSSSBS--GGGSSSS CS
  Peptidase_M14  41 eaeegkpvvlidggiHarEwigsalllylleqLlsaYgedeeikellddtdiyilpvlNPDGyeysstedrlwrknrsnakessceGvDlnRnFpd 136
                    ++ +  + v +++giH++E  g  +l++ le++ +a            ++++ ++p +NP G +  s         r n++     G+DlnR F +
     CCG91920.1  44 ASSPSAKHVYLSAGIHGDEPAGVLALIEWLENFSTA----------SYNYQFTVIPLINPWGLKHNS---------RLNEQ-----GIDLNRAFHK 115
                    56889999************************9986..........6799*************9999.........9****.....********76 PP

                    S CS
  Peptidase_M14 137 l 137
                     
     CCG91920.1 116 V 116
                    5 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.098
                    HHHHHHHHHHHHHHHCHTTTTEEE-EEEEEHHH....HT---SS-HHH.HHHHHTT-SEEEEEEESS CS
  Peptidase_M14 205 deelkslarkyaealqkmvrgteylsegitnga....liyeasggmdd.wayertgvkfeytlelrd 266
                    +++l+++++  a+ ++   +g+++ + g  + +     + e +g  +  + y ++g+k  yt+e++ 
     CCG91920.1 162 KKILEEVSKICAIDNRPKIEGRKH-NGGVLS-RpvkkSWFEKNGYPEAiYFYFQLGCKKIYTIETPS 226
                    555556666666666555555554.222111.11211244443333337999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1737.58
//
Query:       CCG91921.1  [L=240]
Description: 1-acyl-sn-glycerol-3-phosphate acyltransferase (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-16   58.4   0.0    7.1e-16   58.0   0.0    1.2  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0     4e-20   7.1e-16       2     134 ..      35     162 ..      34     163 .. 0.84

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 4e-20
  Acyltransferase   2 vrvtglenlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegklv 95 
                      ++++gle++p +g+++lv+NH s++D+++l +       pr++  +a+ +l++  +l++++ +l++i++dR  ++ + ++ + i+++l++g+lv
       CCG91921.1  35 MHIQGLEKIPLSGGCLLVSNHISHFDPIILGMYS-----PRPIDYVADGKLFNDLVLSQILTNLNVIPVDR--ERMDPKAAKSIVSRLKAGRLV 121
                      6799****************************99.....9*******************************..7778999************** PP

  Acyltransferase  96 viFPE.Gtrsregel.lpfkkGlvrlaakak.kgvpivPvai 134
                      ++FPE G r  + ++ l  k +l + a+ +   ++pi+P +i
       CCG91921.1 122 GLFPErGIRHGKNSIlLGAKLSL-SPAVLCQlSQCPILPTVI 162
                      *****555555555544444444.444444447999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1872.92
//
Query:       CCG91922.1  [L=220]
Description: Leucyl/phenylalanyl-tRNA--protein transferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-63  213.5   0.0    1.5e-63  213.3   0.0    1.0  1  Leu_Phe_trans  Leucyl/phenylalanyl-tRNA protein transferase


Domain annotation for each model (and alignments):
>> Leu_Phe_trans  Leucyl/phenylalanyl-tRNA protein transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.3   0.0   8.5e-68   1.5e-63       2     169 .]      34     201 ..      33     201 .. 0.97

  Alignments for each domain:
  == domain 1  score: 213.3 bits;  conditional E-value: 8.5e-68
  Leu_Phe_trans   2 erlleayaqgifpwaeeeepilwwspdpRavleldelhisrslrktlrkkefevtidkaFeeVieacaekk.rregtWiteeiieaYteLheagla 96 
                    +rll++y++gifpw+++  p++wwspdpRa++++++++ +r+l++++r+++f+++i++ F eVi++ca+++  re+tWi++++i+aYt+Lh+ g+a
     CCG91922.1  34 SRLLAGYRSGIFPWTDR--PLTWWSPDPRAIFDIASFKPPRRLAQKIRQGQFQFSINQCFGEVIQNCAKPApGREHTWISPRFIKAYTDLHRYGYA 127
                    689***********866..**************************************************996677********************* PP

  Leu_Phe_trans  97 hSvEvw.egeLvGGlyGvalgkvffgeSmFsrksdaSkvalvalvellkekgfeliDcqvetphlaslGakeis 169
                    hSvEvw +g L+GGlyGv++g++f+geSmF+r++daSk+al+  +++l+e+gf l+D+qv tp ++ +Ga++i+
     CCG91922.1 128 HSVEVWyKGMLAGGLYGVSIGGFFAGESMFHRVTDASKAALAFTIAHLRERGFVLFDTQVATPVTRLMGAVDIP 201
                    **********************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1571.22
//
Query:       CCG91923.1  [L=412]
Description: CinA-like protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-53  178.3   0.0    1.2e-52  177.5   0.0    1.4  1  CinA           Competence-damaged protein
    1.2e-23   83.4   0.0    2.1e-23   82.6   0.0    1.4  1  MoCF_biosynth  Probable molybdopterin binding domain
     0.0018   18.4   0.0     0.0042   17.2   0.0    1.6  1  CinA_KH        Damage-inducible protein CinA KH domain


Domain annotation for each model (and alignments):
>> CinA  Competence-damaged protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.5   0.0   2.1e-56   1.2e-52       2     154 ..     250     403 ..     249     404 .. 0.98

  Alignments for each domain:
  == domain 1  score: 177.5 bits;  conditional E-value: 2.1e-56
        CinA   2 eslaeevvkllkkkgltlatAEScTGGllaaaltsvpGaSavfeggvvtYsneaKeelLgvseetleehgavSeevaeemaegarerlgadiavavtGi 100
                 ++l+e+v+k +++++l++atAEScTGGl++++lt+vpG+Savf+ g vtYsneaK + L+v++++ ++ gavS+evae+ma ga+e +gadi++avtGi
  CCG91923.1 250 QTLEEVVIKSAAARNLKVATAESCTGGLISNRLTDVPGSSAVFTYGWVTYSNEAKISQLKVHSDLFSSVGAVSREVAEAMALGALEASGADISLAVTGI 348
                 789************************************************************************************************ PP

        CinA 101 AGpsggteekpvGtvyialagkgg.veveklefegdreeireaavkaALellrel 154
                 AGp+ggt+ekpvG+v++a+ +kg+ +++ +  f++dr + ++ + +++++llr++
  CCG91923.1 349 AGPQGGTPEKPVGLVWLAVGRKGKpIRSYERFFPSDRLTFKRLVSQFGIDLLRRS 403
                 ****************************************************986 PP

>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   3.5e-27   2.1e-23       2     140 ..       5     166 ..       4     170 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 3.5e-27
                    EEEE-HHHHTTSSGBHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHHHHHHHTSSEEEEESS-SSSTT--HHHHHHHHHSEE-HHHHHHHHHHH CS
  MoCF_biosynth   2 vitvGdellsgkieDtngpllaellkelgvevskytvvpDdeeeikeallaaleeadviittGGtGptpdDvtpealaklfekelegfeeafrrvs 97 
                     i +G+e++ g   +t+  +la++l+ l  +++ +++v+D  +e+ke ++++++++ v i+tGG+Gpt+dD+t+ea a++++ +l+  +e+ ++v+
     CCG91923.1   5 LINTGTEIILGYKPNTHLEFLANQLFFLDGRIALQQTVGDG-DELKEVIKTSFHRSTVTIVTGGLGPTSDDMTREAAAEALNLPLVFYPEVSKQVQ 99 
                    588************************************98.78*****9999******************************************* PP

                    HHHCC.........................TTSHGGGGGGE.EETTEEEEE-SSHHHHHHHHHHHHHG CS
  MoCF_biosynth  98 lkpgk.........................pvgvapgailsravgktiigLPGspkavkealeeillp 140
                      +++                         p g+a+gai++++ g+ +i LPG p++ + ++++ ++p
     CCG91923.1 100 SLYEAqgiqapewavqkqsffpenslilenPYGTACGAIIEKE-GHYLILLPGPPRELEPMWKKSIIP 166
                    **999***********************************975.666****************99877 PP

>> CinA_KH  Damage-inducible protein CinA KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     7e-07    0.0042       4      47 ..     182     226 ..     179     240 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7e-07
                 EEE-S--HHHHHHHHGGGS-B.SSSEEEEEEETTEEEEEEE...E CS
     CinA_KH   4 LktfGigESavaekladlidr.enptlAiyakegevtvRltakaa 47 
                  +++G+ ES ++ek++  ++  + +++++  ++gev++Rl  k  
  CCG91923.1 182 CRIIGVPESIIQEKIESKLKLvGIEEIGYCESPGEVSLRLLFKDP 226
                 69***************99996666***************87654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2859.02
//
Query:       CCG91924.1  [L=1006]
Description: Protein translocase subunit secA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.6e-129  429.5   0.2   5.6e-129  429.5   0.2    2.3  3  SecA_DEAD     SecA DEAD-like domain
    6.3e-59  199.4   8.7      3e-58  197.2   3.1    2.6  2  SecA_SW       SecA Wing and Scaffold domain
    9.7e-32  109.9   0.3    4.7e-31  107.7   0.0    2.4  2  SecA_PP_bind  SecA preprotein cross-linking domain
     0.0014   18.4   0.1     0.0056   16.5   0.0    2.0  2  DEAD          DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.016   15.6   0.1      0.045   14.1   0.1    1.8  1  Helicase_C    Helicase conserved C-terminal domain
       0.29   11.1   1.3        2.8    7.9   0.1    2.6  2  STI1          STI1 domain


Domain annotation for each model (and alignments):
>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.5   0.2  1.9e-132  5.6e-129       1     289 [.       6     509 ..       6     510 .. 0.97
   2 ?   -2.2   0.1      0.64   1.9e+03      12      56 ..     539     583 ..     534     605 .. 0.77
   3 ?   -1.8   0.0       0.5   1.5e+03      21      84 ..     715     791 ..     688     805 .. 0.54

  Alignments for each domain:
  == domain 1  score: 429.5 bits;  conditional E-value: 1.9e-132
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxx RF
   SecA_DEAD   1 lkkllgsknerelkklkkiveeineleeelkalsdeeLrakteelkerlaegealdellpeafalvreaakr...............vlgmrhydvQli 84 
                 l+k++gsknerel++l++iv++inele++l alsde+L++kt e+k+rl+ege+ld+llpeafa+v+++++r               v++m+++dvQl+
  CCG91924.1   6 LQKVFGSKNERELSRLWPIVHRINELEKDLFALSDEALSNKTFEFKKRLNEGESLDDLLPEAFAVVKHVCRRfkesgkviivrghpvVWDMVPFDVQLL 104
                 5799********************************************************************777777777777777777********* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD  85 GglvlhegkiaemkTGEGKtlvatlpaylnaltgkgvhvvtvndYLakrdaewmgpvyeflGlsvgvieseleseerreaYeaditYgtnnelgfdyLr 183
                 Gg+vlh gkiaem+TGEGKtlvatlp+ylnal g+gvhvvtvndYLa rd+ewmg++y+fl l+vg++++ ++ eerr++Y++d+tYgtn+e+gfdyLr
  CCG91924.1 105 GGIVLHMGKIAEMATGEGKTLVATLPVYLNALLGQGVHVVTVNDYLAARDSEWMGEIYRFLNLTVGCLQQGQSYEERRAQYACDVTYGTNSEFGFDYLR 203
                 *************************************************************************************************** PP

                 xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.................................. RF
   SecA_DEAD 184 Dn.lalskeelvqrglnfaivDEvDsvLiDeArtpLiisgpaee.eselyeeakklvkeleeeed.................................. 246
                 Dn ++++kee+vqrg+ +ai+DEvDs+LiDeArtpLiisgpa+  ++++y+++k+ v++l +++                                   
  CCG91924.1 204 DNsIVTQKEEKVQRGHFYAIIDEVDSILIDEARTPLIISGPATVgATQEYSRYKPQVSRLVQQQViecarmaeevqgllkdkaankekigrllfkiklg 302
                 **9**************************************87779***********7777766567777777788888888899999*********** PP

                 ................................................................................................... RF
   SecA_DEAD 247 ................................................................................................... 246
                                                                                                                    
  CCG91924.1 303 mprnkqlmkfledpeirrymddaelslyqdsrrtelyaikeellfsideknnevdisergrkflnptdpdyfappdlaalfdqldknpgldiqekekir 401
                 *************************************************************************************************** PP

                 .................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD 247 .................................................................akegveieeesqtlatitlqnffrlYeklaGmtG 280
                                                                                  akegv+i +e+qtlatit+qn+frlY+klaGmtG
  CCG91924.1 402 lqaqqkyeeaterihcvsqllrayclyekdvhyviqdnkvvivdeftgrlmpgrrwseglhqaieAKEGVQIDRETQTLATITIQNYFRLYKKLAGMTG 500
                 *************************************************************************************************** PP

                 xxxxxxxxx RF
   SecA_DEAD 281 Taeteaeef 289
                 Taetea+ef
  CCG91924.1 501 TAETEANEF 509
                 ********9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.64
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD  12 elkklkkiveeineleeelkalsdeeLrakteelkerlaegeald 56 
                 +  k+++iv++i+el+++ + +   +++ +++el +r+ ++e++ 
  CCG91924.1 539 RRAKYQNIVQKIKELHAKGQPVLVGTISVEASELLSRMLKRENIP 583
                 45789999****999999999888888888888888877776654 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.5
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxx RF
   SecA_DEAD  21 eeineleeelkalsdeeLrakteelkerlaegealdellpeafalvreaakrvlg.............mrhydvQli 84 
                 e+ n + ++ +   d+ L+ + e +    +e  ++d+   e f++v+e++++ ++             ++h+  Q++
  CCG91924.1 715 EQRNYMIRKHTLQYDDVLNLQREVVYGYRNEILETDNPREEIFSAVQEVIEKEVKsrissgehpdfvgLTHWVNQMF 791
                 33333333332222333322222222222222346777889999999999985553333333333333666666665 PP

>> SecA_SW  SecA Wing and Scaffold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.3    0.0088        26      85     144 ..     376     434 ..     307     438 .. 0.72
   2 !  197.2   3.1     1e-61     3e-58       2     197 ..     698     902 ..     697     904 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0088
                 SHHHHHHHHHCCCSSSTSSTHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH CS
     SecA_SW  85 ewdleglleelkeefsveleelaeellekaekayekkeeeiellrelervvlLevlDkaW 144
                   dl++l+++l+++ +++++e +e++  +a+++ye+ +e+i+ +++l r ++L + D ++
  CCG91924.1 376 PPDLAALFDQLDKNPGLDIQE-KEKIRLQAQQKYEEATERIHCVSQLLRAYCLYEKDVHY 434
                 457899999999988888776.8888889************99*********99988877 PP

  == domain 2  score: 197.2 bits;  conditional E-value: 1e-61
                 B-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHCHHHHHHHHHHHHHHHHHCHHHHS.SS.CSHHHHHHHHHCCCSSS CS
     SecA_SW   2 iesklvsksienaQkkvEernfdiRknlleYDdVmnkQRkviYkqRrevLegesedlrerildliedvveeiveesvpeeekeewdleglleelkeefs 100
                 +e+++++k+++ aQk+vE+rn+ iRk++l+YDdV+n QR+v+Y  R+e+L  e+++ re+i + +++v+e+ v++ +++ e  + d+ gl+++++++f+
  CCG91924.1 698 LEHPWLTKAVAAAQKRVEQRNYMIRKHTLQYDDVLNLQREVVYGYRNEIL--ETDNPREEIFSAVQEVIEKEVKSRISSGE--HPDFVGLTHWVNQMFP 792
                 79************************************************..55699****************88887653..679************* PP

                 TSST...........HHHHHHHHHHHHHHHHHHHHC..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTSSSS-CCHHHHHHHHHHHHHHHHH CS
     SecA_SW 101 vele...........elaeellekaekayekkeeei..ellrelervvlLevlDkaWkehLdamdeLregiglrgygqkdPlqeYkkegfelFeemlar 186
                 + ++           e+++++l+k++kaye k +    ++l +le++++L+++Dk W+ehL++md Lr +iglr+ygqkdPl eYk+e++ lFe++++r
  CCG91924.1 793 IVVKpeeieklgtekEISDYILDKVRKAYELKIKFEksDELISLEKYIVLSAIDKLWQEHLYSMDGLRGSIGLRAYGQKDPLIEYKQEAYLLFEDLMDR 891
                 99999*************************7776224566889******************************************************** PP

                 HHHHHHHHCCC CS
     SecA_SW 187 ikeevvkkllk 197
                 ik+e++++l++
  CCG91924.1 892 IKKEIAHNLFR 902
                 *********98 PP

>> SecA_PP_bind  SecA preprotein cross-linking domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.0   1.6e-34   4.7e-31       5     111 .]     329     466 ..     325     466 .. 0.82
   2 ?   -2.0   0.0       1.9   5.5e+03      13      39 ..     845     871 ..     801     912 .. 0.59

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 1.6e-34
                   HHHHHHHHHCC.CHTTCCECCCTTTSEEEESHHHHHHHHHC....CT-............................SSSTTSCCHCCHHHHHHHHHH CS
  SecA_PP_bind   5 lyekanklvkk.lkeeedyevdekkktveltekGvekvekl....lkv............................keelydeenlelvhhvnqaLk 68 
                   ly+   +++   +kee+ +++dek+++v+++e+G + ++ +    +                               ++ y ee++e++h v+q+L+
    CCG91924.1 329 LYQDSRRTELYaIKEELLFSIDEKNNEVDISERGRKFLNPTdpdyF-AppdlaalfdqldknpgldiqekekirlqAQQKY-EEATERIHCVSQLLR 423
                   6766666665559999**********************99988863.2355555666777778888887766666433333.6667*********** PP

                   HHHCSTTTTTEEECTTCEEEBSTTTSSEBTS--SSTTHHHHHH CS
  SecA_PP_bind  69 AhtlferdvdYivkdgeviivDeftGRlmegrrysdGLhqaie 111
                   A+ l+e+dv+Y+++d++v+ivDeftGRlm+grr+s+GLhqaie
    CCG91924.1 424 AYCLYEKDVHYVIQDNKVVIVDEFTGRLMPGRRWSEGLHQAIE 466
                   ******************************************8 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.9
                   HCCCHTTCCECCCTTTSEEEESHHHHH CS
  SecA_PP_bind  13 vkklkeeedyevdekkktveltekGve 39 
                   + kl +e+ y++d  + ++ l   G++
    CCG91924.1 845 IDKLWQEHLYSMDGLRGSIGLRAYGQK 871
                   334444455566655555555555554 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.9e-06    0.0056      18     134 ..     114     231 ..     102     242 .. 0.77
   2 ?   -2.5   0.0       1.3   3.8e+03     113     136 ..     430     453 ..     395     485 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.9e-06
                 EEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHH.HH... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx... RF
        DEAD  18 lvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrldd.ll... 112
                 +++++TG GKTl++ +pv+ +        g  + +v+    La    + + ++  +++l+v ++ +g+++++ +++    +d+++gt + +    l   
  CCG91924.1 114 IAEMATGEGKTLVATLPVYLNA-----LLGQGVHVVTVNDYLAARDSEWMGEIYRFLNLTVGCLQQGQSYEERRAQY--ACDVTYGTNSEFGFdYLrdn 205
                 5889**************9444.....45556777777899*********************9999*9999888888..9*******955532144455 PP

                 .....HCTSSHCTTEE.EEEEETHHHHH CS
                 .....xxxxxxxxxxx.xxxxxxxxxxx RF
        DEAD 113 .....stgklnlsqvr.flVlDEadrll 134
                      +++k  +++   + ++DE+d +l
  CCG91924.1 206 sivtqKEEK--VQRGHfYAIIDEVDSIL 231
                 555543344..44444169******987 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
                 HCTSSHCTTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 113 stgklnlsqvrflVlDEadrlldq 136
                 ++ +  +++ +++++DE  + l  
  CCG91924.1 430 KDVHYVIQDNKVVIVDEFTGRLMP 453
                 444556777888888887665554 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.5e-05     0.045       6     110 ..     546     657 ..     541     658 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
                 HHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSS.EEEESGGGTSSSTSTTESEEEESSSS........ CS
  Helicase_C   6 llell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesd.vLiatdvaerGidipkvnlVinfdlp........ 94 
                 +++ + +l+++g+ +l+ + +++  e ++ +l++++i   vl+++  q+e  ei+++   g +  v iat++a+rG di+  + V  ++          
  CCG91924.1 546 IVQKIkELHAKGQPVLVGTISVEASELLSRMLKRENIPHNVLNAKHHQQEA-EIIARA--GLRGaVTIATNMAGRGTDIKLGEGVAELGGLyvlgterh 641
                 555554566778888888888887766566678889********7666665.555555..5555599************98888876665544443332 PP

                 SSHHHHHHHHTTSSST CS
  Helicase_C  95 rnvtsyiqriGRtgRa 110
                 +  +   q +GR++R 
  CCG91924.1 642 EARRIDLQLRGRCARQ 657
                 2247778888888875 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1   0.00094       2.8       5      23 ..     309     327 ..     305     329 .. 0.82
   2 ?    0.9   0.1      0.14   4.3e+02      16      35 ..     372     391 ..     365     397 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00094
        STI1   5 faklaanPetrellsDPef 23 
                 + k  ++Pe+r+++ D e+
  CCG91924.1 309 LMKFLEDPEIRRYMDDAEL 327
                 449999**********886 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.14
        STI1  16 ellsDPefvakleeiqsNPq 35 
                 ++++ P++ a ++++ +NP 
  CCG91924.1 372 DYFAPPDLAALFDQLDKNPG 391
                 67888**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1006 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       897  (0.0500307); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 6528.17
//
Query:       CCG91925.1  [L=396]
Description: Serine protease Do [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-31  109.6   0.1    4.1e-31  108.9   0.1    1.3  1  Trypsin_2      Trypsin-like peptidase domain
    1.2e-13   51.4   0.0    2.1e-13   50.6   0.0    1.3  1  Trypsin        Trypsin
    4.6e-08   33.3   0.0      2e-07   31.3   0.0    2.1  1  PDZ_2          PDZ domain
    1.8e-06   27.7   0.1    1.2e-05   25.1   0.0    2.2  2  PDZ_6          PDZ domain
    7.6e-06   26.2   0.0    2.1e-05   24.8   0.0    1.8  1  PDZ            PDZ domain
     0.0012   17.6   0.7       0.72    8.4   0.0    2.2  2  Peptidase_S46  Peptidase S46
  ------ inclusion threshold ------
       0.12   11.3   0.1       0.22   10.5   0.1    1.3  1  Ran-binding    RanGTP-binding protein


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.1   1.6e-34   4.1e-31       1     150 []     106     245 ..     106     245 .. 0.97

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 1.6e-34
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggeks 99 
                 GsG+lv+++g+i+T+aHvv+ + +  v           +++ +v++kv+  dp+ DlAllk+  ++ ++lp+l + +s+++  g++v+v+G+p g+++ 
  CCG91925.1 106 GSGVLVSAEGYIITCAHVVERSIERKV------QVTLNEKKSAVEGKVLIIDPAVDLALLKI--ESKTALPFLDIQSSSPTLLGQTVIVLGNPVGYQN- 195
                 9******************99999888......5678999999*******************..**********************************. PP

   Trypsin_2 100 gsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                  svs+Gi+s+ +++ + ++g+ e++lqtdaa++pG+SGGp++d  G++vG+
  CCG91925.1 196 -SVSKGILSAMDRTIETDEGRIEGLLQTDAAINPGNSGGPIVDISGKFVGI 245
                 .9************************************************8 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   8.1e-17   2.1e-13      24     217 ..     103     267 ..      93     270 .. 0.75

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 8.1e-17
                 EEEEEEEEEETT.EEEEEGGGTTT..GGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTSTT CS
     Trypsin  24 khlCgGslisen.wvlTAaHCvsn..asdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvg 119
                 k l +G+l+s++ +++T aH+v+   +++v+v       + +e+ +  ++ +  i+    +p     D+allk++++     +   +++++ ss+   g
  CCG91925.1 103 KSLGSGVLVSAEgYIITCAHVVERsiERKVQV-------TLNEK-KSAVEGKVLII----DPAV---DLALLKIESK----TALPFLDIQS-SSPTLLG 181
                 45678*****999**********965555555.......33333.24455555444....7776...**********....4444444444.556799* PP

                 TEEEEEESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEE.SSSSCTTSEEEEEEGGGG CS
     Trypsin 120 ttclvsGwgrtkekgksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswg.kgcakgnrpgvytkvssy 217
                 +t++v G +  ++++    + ++ +++++r  ++++ +g+  e  l+++a     ++++G+SGGP+v  +g+ vGi s++  g+a +  +g++++ +++
  CCG91925.1 182 QTVIVLGNPVGYQNS----VSKGILSAMDRT-IETD-EGR-IEGLLQTDA-----AINPGNSGGPIVDISGKFVGISSAKfAGEAIE-GIGFAIPAKKV 267
                 *******99987777....888999999984.4443.344.4999*****.....*************************5555555.68**9998876 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   7.6e-11     2e-07      13      69 ..     318     374 ..     298     383 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 7.6e-11
                 ..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEE CS
       PDZ_2  13 tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltv 69 
                   g+l+ +V++++Paakag+k+g ++l++++++v++le+   ll   k G+ V  t+
  CCG91925.1 318 GMGLLISDVEPNSPAAKAGIKSGMIVLAIGNRRVDELESYPMLLKDIKSGEGVLMTI 374
                 4699**********************************9999999888888887665 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.52   1.3e+03      45      56 .]      55      66 ..      54      66 .. 0.87
   2 !   25.1   0.0   4.7e-09   1.2e-05       2      53 ..     323     373 ..     322     375 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.52
       PDZ_6 45 sagesvvlvvrr 56
                +++e++vlvv++
  CCG91925.1 55 AEDEPTVLVVQK 66
                689*******96 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 4.7e-09
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallr.gsagesvvlv 53 
                 ++ V+p+sPA++AG++ G i+l+++++ v    l+ +  ll+  + ge v ++
  CCG91925.1 323 ISDVEPNSPAAKAGIKSGMIVLAIGNRRV--DELESYPMLLKdIKSGEGVLMT 373
                 789**************************..8888887777766666666665 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   8.1e-09   2.1e-05       8      61 ..     294     354 ..     287     375 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 8.1e-09
                 TTSESSEEEEEETTSS.......SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTS CS
         PDZ   8 grgglGfslkggsdqr.......gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenv 61 
                   +++G+ +++++ +        + +g+ +s+v+p+++a+++g+k G ++l+++++ v ++
  CCG91925.1 294 LAKKFGLHVQEMNRELaeafhvqEGMGLLISDVEPNSPAAKAGIKSGMIVLAIGNRRVDEL 354
                 5678999999999988999999999***********8888888************999876 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00028      0.72      47      75 ..     104     132 ..      96     137 .. 0.87
   2 !    7.5   0.2   0.00055       1.4     625     651 ..     220     246 ..     196     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00028
                    TTEE-EE-STT-EEEE-HHHHHHHHHHT- CS
  Peptidase_S46  47 ggCtasfVSpeGLvlTNHHCaygaiqqhs 75 
                    +  ++ +VS+eG ++T  H++ ++i+++ 
     CCG91925.1 104 SLGSGVLVSAEGYIITCAHVVERSIERKV 132
                    5689*********************9875 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00055
                    EEES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 625 flstnDitGGNSGSPvlngkgelvGla 651
                    + +++ i  GNSG P+++ +g++vG+ 
     CCG91925.1 220 LQTDAAINPGNSGGPIVDISGKFVGIS 246
                    567888999****************85 PP

>> Ran-binding  RanGTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   8.5e-05      0.22      19      72 ..     107     159 ..     104     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.5e-05
  Ran-binding  19 sGislassyaikqvsrllkkvpedkkerkeleklqkkLeskikiispaidLiel 72 
                  sG+ ++++  i ++++ +++   ++k++  l+++++ +e k+ ii pa+dL  l
   CCG91925.1 107 SGVLVSAEGYIITCAHVVERSI-ERKVQVTLNEKKSAVEGKVLIIDPAVDLALL 159
                  6676666666778999998876.677799*********************9544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2861.63
//
Query:       CCG91926.1  [L=360]
Description: Anthranilate phosphoribosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-50  170.0   0.0    9.9e-50  169.5   0.0    1.2  1  Glycos_transf_3  Glycosyl transferase family, a/b domain
    0.00011   21.9   0.0    0.00027   20.7   0.0    1.7  1  Glycos_trans_3N  Glycosyl transferase family, helical bundle 
     0.0046   16.6   0.0     0.0071   16.0   0.0    1.3  1  DpnII-MboI       REase_DpnII-MboI


Domain annotation for each model (and alignments):
>> Glycos_transf_3  Glycosyl transferase family, a/b domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.5   0.0   1.7e-53   9.9e-50       4     251 ..      82     338 ..      79     340 .. 0.90

  Alignments for each domain:
  == domain 1  score: 169.5 bits;  conditional E-value: 1.7e-53
                      BEEEEESS-SSSTHHHHHHHHHHHHHHTT-BEEEEE-STCTTCS-HHHHHCTST--ST--HHHHHHHHHHHSEEEEEHHSSSSHHHHHHHHHHH CS
  Glycos_transf_3   4 lvDivgTGGdgantfNiStaaaivvAaaGvkvakhgnrsvssksGsaDvLealgvnleltpeeveklleevgvgflfapeyhkamkhvapvrre 97 
                      l D +g GG g + fN+Sta  +v+A++Gv+v khgn++++  sGsaDvLe+lg+   l+pe v ++++e g++f+ ap yh+++ + ap r+ 
       CCG91926.1  82 LFDCCGSGGGGLSLFNVSTAMIFVLASLGVPVIKHGNKGITKISGSADVLEKLGIAYRLSPEGVYRSMREIGLAFVYAPDYHPSFMQLAPLRKR 175
                      679******************************************************************************************* PP

                      H...TT.-SSHHHCHHHHHT..SEEEEHHHHHHHHTCHSEEEEEEEESTTSSCCSTSHHHHH.HHHHHHHHHHH.TTEEEEEEEEE......GS CS
  Glycos_transf_3  98 l...girTvfnlLGPLinparvkkqllgvyskelaeklaevlkelgveralvvhgdGldevs.llakttvaelk.dgeiteytlep......ed 180
                      l   +i+Tvf  LGPL+npar+  ql+gv+++e++   +++l+++g e+ ++v g  lde s +l++  v  l  ++ i   +++p       +
       CCG91926.1 176 LgekKIQTVFHFLGPLLNPARPMVQLVGVFREEHVDLFDAALEAMGIEQRAIVYG--LDEQSnPLGELGVEGLGkASGIALEEIQPllkkhaFK 267
                      *444589***********************************************9..8875427888888777646655555555522111134 PP

                      STSSSEEESHHHHSSHHHHHHHHTTHHTSCHHHHHHHHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHTSH CS
  Glycos_transf_3 181 fglkraelealeggepkenaeilkavlegkksaakrdlvllnagaalvlagkadslkegvakaeevidsGk 251
                       g +  ++ +  +++p e+a+ ++++++ + + ++r lv++n+ + l+  g   +++++++ +ee+idsGk
       CCG91926.1 268 RGYAPGSMAEALVHSPLESAQKIEGIFRATLKGYARGLVVANCLVGLLQWGWKGKVEDALEAIEEAIDSGK 338
                      56666778888899********************************************************8 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.5e-08   0.00027       9      62 ..      14      67 ..      11      68 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.5e-08
                     TT.---HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHH CS
  Glycos_trans_3N  9 dgeeLtaeeirfaihgilkgevtdaqiaAfLmAlrlkGetaeEiaalaeAmres 62
                     +g eL++ + ++a+  +l+ + +d++   fL+++  +G+ + E++a+a++ +e+
       CCG91926.1 14 SGRELDEGQVQEAVALLLNPSFPDSEKEQFLVSMACRGMRPKELVAFAKVFLEK 67
                     5789**********************************************9987 PP

>> DpnII-MboI  REase_DpnII-MboI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-06    0.0071      32      67 ..      19      54 ..       1      66 [. 0.83

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-06
  DpnII-MboI 32 nEydvQdllhalLkpiFpdirdeewlpsyagkssra 67
                +E +vQ+++  lL+p Fpd ++e++l s+a   +r+
  CCG91926.1 19 DEGQVQEAVALLLNPSFPDSEKEQFLVSMACRGMRP 54
                899***********************9999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2678.39
//
Query:       CCG91927.1  [L=403]
Description: Carbamoyl-phosphate synthase small chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-51  172.9   0.0    3.7e-51  172.3   0.0    1.3  1  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP
    1.2e-41  142.6   0.0    1.7e-41  142.1   0.0    1.2  1  GATase           Glutamine amidotransferase class-I
    6.1e-08   32.7   0.3    9.3e-06   25.5   0.3    2.3  1  Peptidase_C26    Peptidase C26


Domain annotation for each model (and alignments):
>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.3   0.0   6.1e-55   3.7e-51       1     127 [.       7     134 ..       7     135 .. 0.98

  Alignments for each domain:
  == domain 1  score: 172.3 bits;  conditional E-value: 6.1e-55
  CPSase_sm_chain   1 kavLvLedGtvfeGksfg.akeavGEvvfnTgmtGYqeiltDpsYagqilvltypliGnyGvneedvesekikvaglvvrelseepsnwraees 93 
                      ka+LvLedGtvf G+sfg +++a+GE++fnT+mtGYqeiltDpsY+gqi++ltyp iGnyG+   d++s++i+vaglv+r+ls  ps+wra  s
       CCG91927.1   7 KAFLVLEDGTVFAGESFGaEGTAIGEICFNTSMTGYQEILTDPSYRGQIVCLTYPEIGNYGLCPFDHQSRDIQVAGLVIRSLSPIPSSWRAFCS 100
                      589***************7799************************************************************************ PP

  CPSase_sm_chain  94 LsewlkeekipgisgvDTRaLtkklrekgamkgv 127
                      L e+lk+++++gi+gvDTR+Lt ++re+g++++v
       CCG91927.1 101 LPEFLKRKGVIGIQGVDTRRLTLHIREAGVLRAV 134
                      ******************************9987 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   0.0   2.9e-45   1.7e-41       2     187 ..     217     390 ..     216     393 .. 0.93

  Alignments for each domain:
  == domain 1  score: 142.1 bits;  conditional E-value: 2.9e-45
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekeke 99 
                 ++D++  v+ + +++l++ g++++v+p  asa++il  +++pd+i++s+Gpg+p+  e   + ik +++   P++GICLG+Ql+ai++g+k+ k + ++
  CCG91927.1 217 VMDFG--VKFSTLRYLRSKGFDLHVFPAYASAKRIL--ESDPDAIFLSNGPGDPAfFETLHAEIKPLLG-ARPVFGICLGHQLIAIALGAKTFKLR-FG 309
                 67899..999*************************5..79***************99999999999999.9*************************.** PP

                 EEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHH CS
      GATase 100 hhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnfl 187
                 h+g+++++++    l+  +    i++++H+y+v   e+ p++l+++  + +d++++++++k++p+++vQ+HPE+ ++p+++   f+ +
  CCG91927.1 310 HRGANHPVKN----LFDST--IKITSQNHGYAVCA-ESIPDCLKISEINLNDGTIEGMVHKTKPIFSVQYHPEAAPGPHDALGYFEVF 390
                 **********....55555..889**********8.99*****************************************987666555 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.3   1.6e-09   9.3e-06     106     216 .]     283     375 ..     277     375 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.6e-09
  Peptidase_C26 106 vPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaikelaeelrveAvae.DgviEaie 200
                     P++giC+G+ql+++alG ++++  +       hr      a+h vk   +s ++   +      n     + + + + l+++ +   Dg+iE + 
     CCG91927.1 283 RPVFGICLGHQLIAIALGAKTFKL-R-----FGHR-----GANHPVKNLFDSTIKITSQ------NHGYAVCAESIPDCLKISEINLnDGTIEGMV 361
                    5*****************988753.3.....2343.....4468887655555544444......55555667889******999978*******9 PP

  Peptidase_C26 201 seeakafvlgvQwHPE 216
                    +++  +++++vQ+HPE
     CCG91927.1 362 HKT--KPIFSVQYHPE 375
                    999..47********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2620.73
//
Query:       CCG91928.1  [L=439]
Description: Dihydroorotase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-30  107.0   0.0    1.7e-30  106.5   0.0    1.3  1  Amidohydro_1  Amidohydrolase family
    2.4e-14   53.5   0.0    3.8e-14   52.8   0.0    1.3  1  DHOase        Dihydro-orotase-like
    3.1e-13   50.0   0.4    2.1e-05   24.2   0.6    2.9  3  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.0   2.9e-34   1.7e-30       1     344 []      56     426 ..      56     426 .. 0.78

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 2.9e-34
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH.....HHHHHHHHHHT.SSSEEEEEEESSEGGSGCC CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst.....giealleaaee.lplglrilggkvsldrgsa 91 
                   ivlPGlID+HvHl+             +p+e  +e++++++++a  +G+ttv +m++t ++      i+++++ +++ +      l++ v ++ g+ 
    CCG91928.1  56 IVLPGLIDMHVHLR-------------EPGESRKETIRTATMAAAAGGITTVVAMPNTIPPadhpdTIAWIRKKVDKeA------LVK-VYPT-GC- 130
                   79***********9.............******************************7666****************43......333.2222.22. PP

                   CSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE...TSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTT CS
  Amidohydro_1  92 etskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHa...letkgevedaeaafgetiehgthlevaeslgll 185
                    t++ + ekl++    +i++ a     +al++ +     +  ++ a++ a+  ++p+  H+   + ++g v + e         ++  + ae+l + 
    CCG91928.1 131 ITEERLGEKLAPF-QSLIQAGA-----IALTDDGSCVQNARIMRRAMEYASVLGVPILDHCedtALSDGGV-MNEGLWSTLLGLPGWPSIAEELIVS 220
                   2234455555444.22222111.....455555555555569*******************7743334443.6666666666667777888889999 PP

                   THCCEEEHCTCEEE.....HHHHHHHHHHHHHHCEE........HHHHHHHH...............SEHHHHHHHHHHHHTSCEEEEEECT..... CS
  Amidohydro_1 186 deiklilahgvhlt.....pteaellkerlkeagva........hcpfsnsi...............lrsgrealrkaldeGvkvglgtDga..... 249
                   ++i l+ ++g  ++      + +++l +++k+ g++        h++ ++s                 +++real +al +G+  ++++D+a     
    CCG91928.1 221 RDILLCEKTGAKIHlqhltTEGSIRLLRDAKKRGLPvsaevcphHIALTESAlkeydprfkmnpplrTQKDREALIEALVDGTVEVIASDHAphalf 317
                   99999988887777655424477888888899999999999999888888889**************************************999998 PP

                   .........TSSCCGGHHHHHHHHHHHHHH.CCTT.TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC....CT.......... CS
  Amidohydro_1 250 .........asgnslnlleelrlalklqrg.llye.deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl....di.......... 321
                                   +   + ++l++  + +l+e     +++l +++++ T ++ ++lgl  +  s+  G +ADl+++dl    +           
    CCG91928.1 318 ekevefekaP------F---GVVGLETLVAvCLKElYYSKKMDLVDLFAKLTVGPSRVLGL--EPPSLRYGSPADLILLDLnaswKVdsnaffskgk 403
                   8886654432......2...333333222204555777999********************..899***************865522679999999* PP

                   CGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 322 laafvglkkdgnvkkvivkGklv 344
                   +++f+g++ +g+v+ ++++Gk+v
    CCG91928.1 404 NTPFEGMNLKGKVVLTMIDGKIV 426
                   *********************98 PP

>> DHOase  Dihydro-orotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   6.4e-18   3.8e-14       3     140 ..      56     241 ..      54     243 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 6.4e-18
      DHOase   3 llvpglidlavhlrelsgeakeliet...........tvaaygvtfkaP.......................aaitveddsee............afil 55 
                 +++pglid++vhlre++ + ke+i t           tv a+++t +                          + + e+   e            a +l
  CCG91928.1  56 IVLPGLIDMHVHLREPGESRKETIRTatmaaaaggitTVVAMPNTIPPAdhpdtiawirkkvdkealvkvypTGCITEERLGEklapfqsliqagAIAL 154
                 689******************************************97557889998888888888887777744444444444799********9**** PP

      DHOase  56 tddtvyvtiqllefeglkk.aeLdqalkaiaeDDevtnqsavqdfelarfyGvqLkG...vCeaekivydvLlakaagcgfyvsiiytk 140
                 tdd+  v+ + ++  +++  + L+  + +++eD  + +++ ++++  +   G  L G     e+  + +d+Ll + +g++ ++ ++ t+
  CCG91928.1 155 TDDGSCVQNARIMRRAMEYaSVLGVPILDHCEDTALSDGGVMNEGLWSTLLG--LPGwpsIAEELIVSRDILLCEKTGAKIHLQHLTTE 241
                 ******************9899******************************..***99778888889***************999886 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.6   3.6e-09   2.1e-05       3      36 ..      50      79 ..      48     112 .. 0.68
   2 !    3.1   0.0    0.0087        52     155     242 ..      72     160 ..      69     191 .. 0.80
   3 !   21.7   0.0   1.9e-08   0.00012     352     472 ..     278     426 ..     245     427 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.6e-09
  Amidohydro_3  3 iDakGrlvlPGFvDsHtHlagggvnlrllrlpda 36
                  iDa+G++vlPG++D+H Hl + g    + r +  
    CCG91928.1 50 IDAQGLIVLPGLIDMHVHLREPG----ESRKETI 79
                  9*****************88887....2222222 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0087
  Amidohydro_3 155 reaeaaavaaalaalasyGitsv...eagggnvsslddleplfeltaeeklplrvi....ikelldaaerlglplspgseeltigavklfadgvl 242
                   +e  ++ +++a  a+a+ Git+v       ++ +  d+++++++  ++e + ++v     i       erlg++l p +  +++ga++l +dg+ 
    CCG91928.1  72 GESRKETIRTATMAAAAGGITTVvamPNTIPPADHPDTIAWIRKKVDKE-ALVKVYptgcI-----TEERLGEKLAPFQSLIQAGAIALTDDGSC 160
                   566777888999999999*****99878899999*********999999.56677744442.....578999999999999*******9999875 PP

  == domain 3  score: 21.7 bits;  conditional E-value: 1.9e-08
  Amidohydro_3 352 erargstpvkellnagvkvalgsDapvgpfdpwprigaavmrktrrgg................evlrpdeelsleealalyTrgpAkalgledrkG 432
                   +r+++ +p+++ ++    + +  D  v+++ + +  +a++ ++   ++                + l  +++++l +++a +T gp ++lgle    
    CCG91928.1 278 PRFKMNPPLRTQKDREALIEALVDGTVEVIASDHAPHALFEKEVEFEKapfgvvgletlvavclKELYYSKKMDLVDLFAKLTVGPSRVLGLEP--P 372
                   5555555555555555555555555555555555555555555555555555566666666666555567999*********************..5 PP

  Amidohydro_3 433 tLevGadADlvvld.adpldvdppelaear.............vrltvvdGrvv 472
                   +L+ G +ADl++ld ++  +vd ++ ++++             v+lt++dG++v
    CCG91928.1 373 SLRYGSPADLILLDlNASWKVDSNAFFSKGkntpfegmnlkgkVVLTMIDGKIV 426
                   **************8778899999999999***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2832.05
//
Query:       CCG91929.1  [L=326]
Description: aspartate carbamoyltransferase, catalytic subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-38  132.6   0.0    1.5e-38  132.1   0.0    1.2  1  OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl
    1.6e-25   90.0   0.0    4.3e-25   88.6   0.0    1.7  1  OTCace    Aspartate/ornithine carbamoyltransferase, Asp/Orn b


Domain annotation for each model (and alignments):
>> OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.0   1.7e-42   1.5e-38       1     148 []      16     158 ..      16     158 .. 0.97

  Alignments for each domain:
  == domain 1  score: 132.1 bits;  conditional E-value: 1.7e-42
                 S-BSSGGGS-HHHHHHHHHHHHHHHHHHHTTT-STTTTT-EEEEEESS--HHHHHHHHHHHHHTTSEEEEEESTTTSCTTTGGSTTSSCHHHHHHHHHH CS
    OTCace_N   1 rhllsledlskeeieelldlaaelkekvkkekkekllkgktlallFeepStRTrvSfevAakrlGgkvlslseaediqlssvskgrkEsleDtarvlsr 99 
                 ++l+sle l+ +eie++l  a+e+k   k++   + lk+ t   l  epStRTrvSfe+Aak+lG + ls++ +    +ss++kg  Esl+Dta+ l++
  CCG91929.1  16 KDLVSLEALDFSEIEAILLAAKEFKTILKENLPLPFLKRYTALALMVEPSTRTRVSFEIAAKKLGISFLSIDYK----TSSIQKG--ESLKDTAKNLEA 108
                 689**************************9******************************************66....999****..************ PP

                 HT.SEEEEEESSHHHHHHHHHHHSSEEEEEEETSSB-HHHHHHHHHHHHH CS
    OTCace_N 100 yv.daiviRhpgaeeleelakyasvpviNagdgdgeHPtQaLaDlltire 148
                 ++ d ++iRhp+a ++  lak  +++viN+gdg++eHPtQ L+Dl+ti+e
  CCG91929.1 109 LGiDFLIIRHPAAGSAAFLAKLLNISVINGGDGAHEHPTQGLLDLMTIEE 158
                 ***********7777999**999*************************97 PP

>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0   4.8e-29   4.3e-25       2     157 .]     165     311 ..     164     311 .. 0.90

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 4.8e-29
                 C.EEEEESS.TTSHHHHHHHHHHHHCT-EEEEES-TTSSH-HHHHHHHHHHHHHHT-EEEEESSCHHHHTT-SEEEE--SSETTCCGGHHHHHHHHCC. CS
      OTCace   2 glkiafvGd.kknnvanslikllarlgmdvvlvaPkglepdkevleeakknakksggsititedleeavkgaDvvytdvwvsmgeekereerlkklkd. 98 
                 glk+ +vGd  +++va+s  ++l+++g++v++v+P +l p    +       k  g++  i+ +l e +  aD ++  +++   + k+ + ++ ++   
  CCG91929.1 165 GLKVLIVGDiLHSRVARSTFWALSKYGANVKFVGPITLLP--SYF-------KDFGAE--ISYNLDESLPFADCIILLRLQHERQRKDLFPSISEYIAs 252
                 89********9**************************655..233.......222555..556699***************999999999998888777 PP

                 CSB-HHHHHHS-TT-EEEE-S---BTTTB-HHHHTSTTBHHHHHHHHHHHHHHHHHHHH CS
      OTCace  99 yqvteellklakkdaivlHcLPakrgeEvtdeVfdsprsvvfeqaeNrlhtikAllvll 157
                 y +t e +k++kkd++++H+ P++rg E+++e  dsp+s++ +q+eN+l +++A+++ll
  CCG91929.1 253 YSLTTERMKKCKKDVLIMHPGPVERGVEMESELADSPNSAILKQVENGLAIRMAVFYLL 311
                 ********************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2009.83
//
Query:       CCG91930.1  [L=182]
Description: 3-isopropylmalate dehydratase small subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.6e-20   71.4   0.0    1.7e-19   70.5   0.0    1.4  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   9.2e-24   1.7e-19      72     124 ..      65     116 ..      49     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 9.2e-24
                  TT--EEEE--SSBTBS---THHHHHHHHTTEEEEEES-B-HHHHHHHHHTT-E CS
  Aconitase_C  72 egaklvviagknfGeGSSRehAAkalrllGikaviaeSFerIfennliknglL 124
                   + ++ +iagknfG+GSSRehA+ al++ G ++via+S++rIf +n i  g+L
   CCG91930.1  65 TEYPI-IIAGKNFGCGSSREHAPIALAAAGCRVVIAKSYARIFFRNCIATGVL 116
                  34555.5566****************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1178.71
//
Query:       CCG91931.1  [L=370]
Description: 3-isopropylmalate dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-126  422.0   0.0     2e-126  421.8   0.0    1.0  1  Iso_dh           Isocitrate/isopropylmalate dehydrogenase
  ------ inclusion threshold ------
      0.017   13.9   0.0      0.025   13.4   0.0    1.1  1  AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synt


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.8   0.0  2.2e-130    2e-126       2     348 .]       6     354 ..       5     354 .. 0.99

  Alignments for each domain:
  == domain 1  score: 421.8 bits;  conditional E-value: 2.2e-130
                 EEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CS....SSSSSHHH.HHHHHHHHTTEE CS
      Iso_dh   2 iallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikeadvvllgavgtpk....ekevrpen.gLlaLrkeldlf 95 
                 +a+l gdgiGpe v++++ +l+ a+  +g el fee+ vGg ai++tg++lp etle++k+a+++ +gavg+ +    + e++pe+ +Ll Lrk++ lf
  CCG91931.1   6 VAVLAGDGIGPELVRVTIPILRLASYLYGFELIFEEALVGGTAIEATGKALPPETLEICKRAQAIFFGAVGGKQweslPPEKQPERaALLPLRKTFSLF 104
                 89****************************************************************************999****99************ PP

                 EEEEEEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHHHH CS
      Iso_dh  96 anlrpvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlksse 194
                 anlrp+++++++ ++splk+e++++vdl+ivReltggiYfg++k +  + +++e a+dt ly+++eier+a++afelAl+r kk++tl+dKanvl+ss 
  CCG91931.1 105 ANLRPITCYPEIIDASPLKPEIASGVDLLIVRELTGGIYFGQPKGRVLT-EQGERAIDTLLYDTSEIERVATVAFELALRR-KKSLTLIDKANVLESSL 201
                 **********************************************998.69999**************************.***************** PP

                 HHHHHHHHHHCCTTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEETSS-EEEEESS---CCCTTSS-S-THHH CS
      Iso_dh 195 lwrkiveevaeeeypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslgekkvaifEavHGsapdiagkdkaNpiav 293
                 lwrk+v+e+a+ +yp++ l+ ++vD+aamqlv +p+qfdV++++NlfGDilSDeaa + GslGll+Sas+g++k++++E++ Gsapdiagk++aNpi++
  CCG91931.1 202 LWRKTVKEIAN-NYPEVDLKFMYVDNAAMQLVLKPTQFDVLLCENLFGDILSDEAAGIAGSLGLLASASIGASKFGLYEPAGGSAPDIAGKGIANPISQ 299
                 ***********.*************************************************************************************** PP

                 HHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHTSCCHHHCTTSTCCCHHHHHHHHH CS
      Iso_dh 294 ilSaalmLryslgleeaAdkiekAvekvleagivTkDlageaakevstsefgdav 348
                 ilS alm +ys+++eeaA++i++Av++vl++g++T D+a+ +a++ +t+ef ++v
  CCG91931.1 300 ILSGALMFEYSFQEEEAAQAIKDAVRDVLKEGYRTMDIAKGSATYCTTEEFAEKV 354
                 ****************************************************987 PP

>> AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synthetase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.8e-06     0.025      67     133 ..     281     347 ..     278     367 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.8e-06
                      --EEEEETTEEEEEE-EEEEEEEEEEEEE.EEE--HHHHHHHHHHHHHHHH-SS--TTTSEEEEEEE CS
  AdoMet_Synthase  67 aGesepkfgGGeviepieillsgratkevegekipveeialeaakeylkenlraldlekdvivdvkl 133
                      aG s+p + G  + +pi  +lsg  + e++ ++ ++ + +++a+++ lke +r++d+ k     ++ 
       CCG91931.1 281 AGGSAPDIAGKGIANPISQILSGALMFEYSFQEEEAAQAIKDAVRDVLKEGYRTMDIAKGSATYCTT 347
                      899*****************************************************99876666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2508.38
//
Query:       CCG91932.1  [L=379]
Description: Transcriptional regulator, Lrp/AsnC family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-16   58.4   0.0      9e-07   29.0   0.0    2.4  2  AsnC_trans_reg2  AsnC-like ligand binding domain
  ------ inclusion threshold ------
      0.063   12.9   0.0        6.2    6.5   0.0    2.7  2  HTH_24           Winged helix-turn-helix DNA-binding
       0.22   11.5   0.6       0.55   10.2   0.1    2.0  2  MarR             MarR family


Domain annotation for each model (and alignments):
>> AsnC_trans_reg2  AsnC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.5e-10     9e-07       8      81 ..      79     160 ..      76     161 .. 0.88
   2 !   26.9   0.0   6.6e-10   3.9e-06       6      67 ..     266     332 ..     264     345 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.5e-10
  AsnC_trans_reg2   8 alvawkvpeerveevaev.vaelpevtHcYeR..e.....wpynlyfmvharseeeveevlaeiaaatgledyevLpstref 81 
                      alvawk+pe+ ++e+    +++ p   H++ R  +      +y l+ ++ +++  +++++ + +++ +g+edy+++p++  f
       CCG91932.1  79 ALVAWKIPENSLHEAFDFlFQKDPFSGHVVIRstDpaaagARYRLWSTLKVPQGFSIQTHCELLKNLIGAEDYRIMPAKGIF 160
                      8**********9999888356999********661556669************************************98665 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 6.6e-10
  AsnC_trans_reg2   6 analvawkvpeerveevaevvaelpevtHcYeRe.....wpynlyfmvharseeeveevlaeiaaat 67 
                       nal  w vp+    e++ ++ +++  tHcY Re      + n+ ++ h++++  +e++ + i +++
       CCG91932.1 266 FNALFHWAVPQGMEREAGGQIGRFEILTHCYWREagsefKNVNIMAVAHGKDKGLLESHKKAIDEHL 332
                      599******************************6666678*************77777666666554 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.001       6.2      20      45 ..      36      61 ..      35      64 .. 0.84
   2 ?    3.6   0.0    0.0083        50      24      46 ..     221     243 ..     221     244 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.001
      HTH_24 20 qreLAerlglSpstvnrrlkrLeeeG 45
                 +e+A  ++l+++ v++r++ + ++G
  CCG91932.1 36 FKEIAHLTNLPLALVLERIRLMFSAG 61
                59*****************9765555 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0083
      HTH_24  24 AerlglSpstvnrrlkrLeeeGl 46 
                 A ++g+S+++     k+Le+ G+
  CCG91932.1 221 ASKIGMSSQAFFSIAKELEQIGI 243
                 679*****************998 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.5   8.8e+03      22      51 ..      38      67 ..      36      69 .. 0.66
   2 ?   10.2   0.1   9.3e-05      0.55       1      49 [.     192     246 ..     192     248 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.5
                HHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR 22 eLakklgvskstvtrvldrLekkGlieRsk 51
                e+a   ++  + v + ++ +  +G i+R +
  CCG91932.1 38 EIAHLTNLPLALVLERIRLMFSAGTIRRIR 67
                555555666666666777777888888866 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 9.3e-05
                 --HHHHHHHHHHHHSTTEEHH......HHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        MarR   1 ltltqfviLrilyeqgplsvs......eLakklgvskstvtrvldrLekkGlieR 49 
                 l++ q+++L +l+e+  l  +      + a+k+g+s+ +   ++++Le+ G + R
  CCG91932.1 192 LSEKQWLVLKSLKEELTLEEIdeglweKRASKIGMSSQAFFSIAKELEQIGILGR 246
                 78999********9999999999999999**********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2741.59
//
Query:       CCG91933.1  [L=615]
Description: Sulfate permease, MFS superfamily [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-71  239.1  19.5    7.8e-71  238.8  19.5    1.1  1  Sulfate_transp  Sulfate permease family
    6.5e-13   48.3   0.0    1.4e-12   47.3   0.0    1.4  1  STAS            STAS domain
    0.00059   20.2   3.9    0.00059   20.2   3.9    3.0  3  MFS_MOT1        Molybdate transporter of MFS superfamily
  ------ inclusion threshold ------
        5.9    6.2   8.0       0.58    9.5   3.1    1.7  2  DUF373          Domain of unknown function (DUF373)


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.8  19.5   1.7e-74   7.8e-71       1     380 []      57     423 ..      57     423 .. 0.96

  Alignments for each domain:
  == domain 1  score: 238.8 bits;  conditional E-value: 1.7e-74
  Sulfate_transp   1 lkgDliaGitvallaiPqalayallaglppiygLyssvvpqlvyalfGtsrqlavGpvavlslivgeiiakvaeeepekgieiattltllaGviq 95 
                     ++ D+ aGi vall+iPq++ayal+aglp++ygLy++ +++l+  lf +sr +++Gp+ ++s+++ ++  ++  +++++++  +  + l++G+i+
      CCG91933.1  57 FQIDFKAGINVALLSIPQGMAYALIAGLPVQYGLYACAISSLLGPLFQSSRYVVLGPTNATSVLLFSTYLNI--QKQVDKLSTLPFVLLFVGIIL 149
                     77899***************************************************************9999..999999*************** PP

  Sulfate_transp  96 vllGllRLgflveflseavlsGfiaGaaivillsqikvllglervskkeslvsvlsslftnlekvnlakvvlgllllvvLlvtkellkklkkllv 190
                     +l+ l+R++ l++++s++v++G+i+Ga++ i+  q++ ++g e  s+   ++  ++++++ l+ +++++v++g++ l   +  k++        +
      CCG91933.1 150 ILVSLFRMAGLTQYVSRTVIVGYITGASFLIIAGQLHRVMGFE-LSEAYTFFDIVVQTLNRLHLIQWPSVAIGICSLGCWWWLKKR--------F 235
                     ******************************************8.999999*************************99988888885........5 PP

  Sulfate_transp 191 ipapaelvavivatlvsaifelkreagvkivgeipsglpelslpkvdwsllsallpdalaialvglleaiavsksldkkkgykvdsnkELvAlGf 285
                     ++ pa+ +++++  ++  ++ ++ +  + +++ ip+   ++ lp +++  +s+l++ ++a+a+++ +e++ +++sl++++g  ++ n+ L+A+G+
      CCG91933.1 236 PKLPAIALSLVLMSFLGTLM-HSLHLPIEFLKPIPMATWPITLPTMNFHWFSTLASMSFALAFFAAVEGTGIARSLANRSGEPLELNRDLFAQGI 329
                     67788888888888888888.66668999****************************************************************** PP

  Sulfate_transp 286 sNilsslfgglpatgafsrsavnikaGaktqlsglvsalvvllvllvltplleyiPkavLaaiiivagkglLvelkelkklwklskldflillat 380
                     +Ni +s+f+g+p++g+++rsa+n ++   tql++l s+++  ++ll+++pll yiP+ +L+a++i+ag++ L++ +e+k +   +++df+++++t
      CCG91933.1 330 ANIGCSFFSGMPVSGSLTRSALNWASKPATQLANLWSGILMSIALLFGGPLLGYIPIPALSALVISAGLS-LINPNEIKIALTATRFDFTVFVVT 423
                     **********************************************************************.9999*****************997 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   3.1e-16   1.4e-12       6     112 ..     478     577 ..     475     580 .. 0.97

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 3.1e-16
                 ECTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTTCGGC CS
        STAS   6 eiegililrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektgffde 104
                 ++++i i++++g+++f+ +e f+ +++++++ +p       +++ +il + + +++D + + aL+e+++ l  +g  ++++++   v + l+++g++d 
  CCG91933.1 478 VHPDISIIHIEGELFFGVSELFRTQINKILALNP-------KIRVVILRMRNAHHLDATNAMALEELHHWLTEQGKFLLISGVIRPVFRVLRNSGVLDR 569
                 6899*****************************8.......89******************************************************** PP

                 C..SEEES CS
        STAS 105 veeeklfl 112
                 ++++++f+
  CCG91933.1 570 IGRKNVFP 577
                 **999997 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   3.0     0.035   1.6e+02      73     108 ..     143     177 ..      68     180 .. 0.88
   2 ?   -3.1   0.1       2.4   1.1e+04      66      79 ..     239     252 ..     216     272 .. 0.51
   3 !   20.2   3.9   1.3e-07   0.00059      25     111 .]     312     400 ..     285     400 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.035
    MFS_MOT1  73 illGlvllllgltgllerllrliPksvlgglllgaG 108
                 +++G++l+l++l++ +  l++++ ++v+ g + ga 
  CCG91933.1 143 LFVGIILILVSLFR-MAGLTQYVSRTVIVGYITGAS 177
                 79999999999998.8999*********99998876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.4
    MFS_MOT1  66 artgaagillGlvl 79 
                 + ++ + +l++ + 
  CCG91933.1 239 PAIALSLVLMSFLG 252
                 33444444444433 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 1.3e-07
    MFS_MOT1  25 a....slsltalllsvGlmnlltglfggvPmc...hgAgglaaqyrfgartgaagillGlvllllgltgllerllrliPksvlgglllgaGleL 111
                 +     l+l++ l+  G++n+ +++f g+P++   + ++   a    ++ t  a+++ G+++ +  l+g    ll +iP + l +l++ aGl+L
  CCG91933.1 312 NrsgePLELNRDLFAQGIANIGCSFFSGMPVSgslTRSALNWAS---KPATQLANLWSGILMSIALLFG--GPLLGYIPIPALSALVISAGLSL 400
                 1445578899999*******************877667766666...9999********9998888887..99*******************98 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.1   0.00013      0.58     139     203 ..     123     189 ..     116     225 .. 0.82
   2 ?   -2.1   0.2      0.45     2e+03     304     304 ..     369     369 ..     270     438 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00013
      DUF373 139 styyllkkalkdpelrktiLvplGlllliyalllllglpelala..iillllGlylllrGfgldell 203
                 sty  ++k ++   +  ++L  +G++l++++l+ ++gl++++ +  i+  + G+ +l+ + +l++++
  CCG91933.1 123 STYLNIQKQVDKLSTLPFVLLFVGIILILVSLFRMAGLTQYVSRtvIVGYITGASFLIIAGQLHRVM 189
                 799999999999999********************99999765410444577888888888877765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.45
      DUF373 304 l 304
                 l
  CCG91933.1 369 L 369
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4321.17
//
Query:       CCG91934.1  [L=385]
Description: Tyrosyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-58  198.2   0.0    2.2e-58  197.9   0.0    1.1  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)
    1.1e-07   31.5   0.4    2.9e-07   30.1   0.0    1.9  2  S4            S4 domain
     0.0022   17.8   0.0     0.0043   16.8   0.0    1.4  1  TyrRSs_C      Tyrosyl-tRNA synthetase C-terminal domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.9   0.0   3.7e-62   2.2e-58       4     292 ..      29     303 ..      26     304 .. 0.90

  Alignments for each domain:
  == domain 1  score: 197.9 bits;  conditional E-value: 3.7e-62
                   S--EEEEEEETSSS.-BGGGHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT.-SSHHHHHHHHHHHHHH..HHHHHHHTCHTTTEEEEETHHHHTT CS
  tRNA-synt_1b   4 rplrvysGidPTgk.lHlGylvplkklvelqkaghevffliaDlhAiigdps.kaeerklrkreevlena..ikaqlakgldpekaevvlqsewleh 96 
                   ++lr++ G+dPT+  lHlG+ ++l kl ++q+ gh+v+++i+D++A igdps ++++r l  +e+ l+na  + +q  k+ld e++e++++ +w   
    CCG91934.1  29 KKLRIKFGVDPTSAnLHLGHAISLLKLKQFQDLGHQVLLVIGDFTASIGDPSgRNTTRPLVPKEQILKNAqtYTEQAFKILDKEHTEIFWNGSWFGR 125
                   789********************************************************************************************** PP

                   HHHHHHHHHHHTTCBHHHHHHHHHCCHHCSSSC--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHHHHHHHHHHHSTTSS-EEEEET-BBS CS
  tRNA-synt_1b  97 lelaellrdlgklgslnrmlqfksvkkrleegegislgeftYplLqaaDilllkadlvpgGsDQkqnielgrdlarrfnkkevfkkpegltvplltg 193
                   l+  ell   g+ +++n++l ++++++r+  +++i l+e+ YplLqa+D+++++ad+++gG DQ +n+ lgrd +++ +++    +++++t p+l+g
    CCG91934.1 126 LSAEELLGL-GRRVTVNKLLHRQDFHDRFTADQSIFLHELFYPLLQAWDSVMVRADIEIGGRDQLFNMLLGRDFQKEEGQN----PQVVITLPILEG 217
                   ******985.555******************99***********************************************9....************ PP

                   TTSSSBTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTCSHHHHHHHHHTHHHCHHHHHHHHCCSEEESSHHHHHHHHHCCCCHHHHHHHHHHHHHHH CS
  tRNA-synt_1b 194 ldGekKmSKSagnsaIfLddekesvkkkiqkavtdsdeevekllklktelsnelierleavsgkkpkreaeellaeevtklvhggdlkkalaealne 290
                   ldG +KmSKS gn  I +++    +k+ ++k ++ sd  +++++ ++ + + +l++  ++   +k+       lae ++ l++g++ + ++  ++++
    CCG91934.1 218 LDGSRKMSKSLGN-DIGITEP---PKEIFGKTMSISDWLMKRWFLVLFGEEVDLLTNPME---EKK------RLAEKIVTLFYGKEEAIKARTEFER 301
                   *************.8877665...55668999999**99999888888777766666666...333......4455555567777777777777666 PP

                   HH CS
  tRNA-synt_1b 291 ll 292
                   ++
    CCG91934.1 302 VF 303
                   65 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1         1     6e+03      26      32 ..     136     142 ..     135     144 .. 0.79
   2 !   30.1   0.0   4.8e-11   2.9e-07       1      38 [.     322     359 ..     322     365 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1
                 TTEEETT CS
          S4  26 GrVlVNG 32 
                 +rV+VN+
  CCG91934.1 136 RRVTVNK 142
                 6899995 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 4.8e-11
                 EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--T CS
          S4   1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdp 38 
                 +++  +l++ g ++s++eAr+lI +G+V   Gk+v+d 
  CCG91934.1 322 MPIVELLVAVGAVKSKSEARRLITQGGVSYQGKKVTDI 359
                 678889999***************************96 PP

>> TyrRSs_C  Tyrosyl-tRNA synthetase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   7.3e-07    0.0043      21      52 ..     322     353 ..     302     364 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.3e-07
                 -SHHHHHHHTTS-STHHHHHHHHHHT-EEEEE CS
    TyrRSs_C  21 ksiariLyaaGLasskseghrliakkgayvgs 52 
                  +i  +L a+G ++skse++rli++ g+   +
  CCG91934.1 322 MPIVELLVAVGAVKSKSEARRLITQGGVSYQG 353
                 356789*********************97555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2780.78
//
Query:       CCG91935.1  [L=255]
Description: RNA-binding protein, RRM domain (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-23   82.2   0.0    3.6e-23   81.2   0.0    1.6  1  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R
    1.5e-05   24.6   0.0    2.7e-05   23.8   0.0    1.4  1  RRM_5           RNA recognition motif. (a.k.a. RRM, RBD, or R
  ------ inclusion threshold ------
      0.064   13.4   0.0       0.22   11.7   0.0    1.9  1  RRM_7           RNA recognition motif
        9.4    6.1  10.1        1.9    8.3   3.4    2.2  2  Endonuc_Holl    Endonuclease related to archaeal Holliday jun


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0     8e-27   3.6e-23       1      69 [.     171     240 ..     171     241 .. 0.99

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 8e-27
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+VgnLp+++t+++L e+F k+Gpik+++++rd +t+++kgf+fVe+++ ++A+kA+  ln+ +++gr++
  CCG91935.1 171 LYVGNLPYNLTDSDLFEIFAKVGPIKNVEIIRDrRTNRTKGFGFVEMADLDSARKAVTILNRIEVMGRRI 240
                 8*******************************************************************97 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   5.9e-09   2.7e-05      26     102 ..     168     248 ..     143     254 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 5.9e-09
       RRM_5  26 gsVllVyglepdkvnldklFnlfclYgnvervkflktk.....ketalvqmgdasaveravqHLnnaklfgkrlevalSKqq 102
                 +  l V +l p +++ + lF +f+  g ++ v +++ +     k+  +v+m+d  ++ +av+ Ln +++ g+r+ v+  K +
  CCG91935.1 168 SNKLYVGNL-PYNLTDSDLFEIFAKVGPIKNVEIIRDRrtnrtKGFGFVEMADLDSARKAVTILNRIEVMGRRIIVTGAKSE 248
                 555666666.45678899*****************875222336789***************************99988876 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.9e-05      0.22       1      40 [.     168     208 ..     168     228 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.9e-05
       RRM_7   1 srkvFvGGlPiDiteeelkatfkefgkvl.vdwPkkaeskk 40 
                 s k++vG lP ++t+++l + f + g+++ v+  +  ++++
  CCG91935.1 168 SNKLYVGNLPYNLTDSDLFEIFAKVGPIKnVEIIRDRRTNR 208
                 78************************985377766666555 PP

>> Endonuc_Holl  Endonuclease related to archaeal Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.4   0.00042       1.9       8      66 ..       2      60 ..       1      63 [. 0.90
   2 ?    1.8   0.6     0.043   1.9e+02      21      61 ..      84     126 ..      68     150 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00042
  Endonuc_Holl  8 vlllkiskiqkklekkarelfeewkkeeaeeleklkeaeallkkeaevkleewkkkeek 66
                  +l +++ +++k++ +k+r+l ++++k+++++ +++++   ++++ ++vk   wk+ +ek
    CCG91935.1  2 ILIQQLDSLRKETTMKDRQLKSSYRKDSSRRYSRKNRYALRSEETKKVKTSFWKSLKEK 60
                  56788999***********************9999988899999999999999998886 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.043
  Endonuc_Holl  21 ekkarelfeewkke...eaeeleklkeaeallkkeaevkleewk 61 
                   +k ++e+ +e +k+   ++ e ++l +a+   +ke+ + ++ew 
    CCG91935.1  84 DK-KEEIKTEDRKApekSYTEAKTLSKATVAKSKEQVAAYQEWS 126
                   32.23333333332000223333333444444555556677775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1699  (0.0947627); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2126.64
//
Query:       CCG91936.1  [L=128]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-15   55.3   0.1    7.4e-15   55.0   0.1    1.1  1  DUF525    ApaG domain


Domain annotation for each model (and alignments):
>> DUF525  ApaG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   4.1e-19   7.4e-15       5      83 ..      23     102 ..      19     105 .. 0.85

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 4.1e-19
                 BTTB--EEE..EEEEEEEE-SSS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEEEEEEESSSEEEEEEEE CS
      DUF525   5 speeekyvf..aYsirieneseesvqLlsRhweitdadgkveevegeGvvGeqPlLepgesFeYtSgvsletpsGsmeGsy 83 
                 ++ +++y++   Y i+i n s ++v L  R+w++t++ g+++ +eg G+vG +P L+ ge+F+Y+S+   +   +++eGsy
  CCG91936.1  23 KSLSSNYLYvcFYYISILNFSPKTVLLKGRKWIVTNDLGEKTVIEGLGIVGTYPRLKMGEKFRYSSHHFYSR-PSVVEGSY 102
                 4445555552269****************************************************9876655.56889988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 924.01
//
Query:       CCG91937.1  [L=257]
Description: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-71  239.1   0.0    5.6e-71  238.8   0.0    1.0  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
    6.1e-08   32.3   0.0    7.8e-08   32.0   0.0    1.1  1  PfkB          pfkB family carbohydrate kinase
      4e-05   23.2   0.0    6.6e-05   22.5   0.0    1.4  1  Carb_kinase   Carbohydrate kinase
  ------ inclusion threshold ------
      0.044   13.2   0.0        1.6    8.0   0.0    2.1  2  HK            Hydroxyethylthiazole kinase family
       0.18   11.5   0.0       0.25   11.0   0.0    1.2  1  Big_3_3       Bacterial Ig-like domain (group 3)


Domain annotation for each model (and alignments):
>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.8   0.0   1.6e-74   5.6e-71       1     239 [.      11     249 ..      11     253 .. 0.97

  Alignments for each domain:
  == domain 1  score: 238.8 bits;  conditional E-value: 1.6e-74
                   ETTSSSHHHHHHHHHHHTTEEEEEEEEEEEEEETTCEEEEEE--HHHHHHHHHHHHHTS--SEEEE-S--SHHHHHHHHHHHHHTTS..SEEEE--- CS
  Phos_pyr_kin   1 DssGGAGiqADlktfsalgvygmsvitaltaqntkgvkevhplpaelveaqleavledvkvdavKiGmlasaeiievvaeklkkykv..pvVlDPVm 95 
                   D+s+GAGiq Dlkt+++lg+yg+++it+++a  +  v++++plp +++e+q++++l+ ++++a+KiGml+++e+ e +ae ++k+++  p+V+DPV+
    CCG91937.1  11 DCSCGAGIQGDLKTVTNLGAYGTTIITSIVAEHPGRVESLFPLPVSIIESQFHSILDFFPISAIKIGMLYKKELPEKIAELIQKFRIkaPIVIDPVL 107
                   9*********************************************************************************9976667******** PP

                   SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE--- CS
  Phos_pyr_kin  96 vaksgselleeeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaerie 192
                   +a +g++l+e+   eal ++L+plat++tPN++Eae L+g  i+  ed+ ++a++l+++  ++ +ikGghl+g+++   dvl ++++++ +e +ri 
    CCG91937.1 108 AAGNGDPLAEPGMEEALPKNLFPLATIVTPNIEEAEILSGFIIEGPEDLPSVAQDLAEQYGTSFMIKGGHLQGKTTL--DVLHHNGKTYSFELPRIF 202
                   **********************************************************99999********776666..****************** PP

                   -S--BTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHCG-BST CS
  Phos_pyr_kin 193 tknthGtGCtlssaiaaelakgesleeAvkkAkeyvteaikealelg 239
                   + n hGtGC+++s+ia  la+g ++++Av++Ak+ ++e ik+++++g
    CCG91937.1 203 SANPHGTGCSMASMIAVFLAQGLDVPNAVERAKHTLYEKIKREIQIG 249
                   ********************************************998 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   2.2e-11   7.8e-08     126     283 ..      67     235 ..      39     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 2.2e-11
                 HHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTE.EEEEECESSSHH.....HHHHHHHHH.CTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHH CS
        PfkB 126 lleeadllyisgllsselpeavleelaeaaknggt.fdpnlldplgaq.....fkeallell.aladllkpneeElealtgekledieealaalhklka 217
                 ++   + + i+ l  +elpe++ e++++ + ++    dp+l +  g+      + eal + l +la++++pn eE+e+l+g  +e +e++  +++ l +
  CCG91937.1  67 DFFPISAIKIGMLYKKELPEKIAELIQKFRIKAPIvIDPVLAAGNGDPlaepgMEEALPKNLfPLATIVTPNIEEAEILSGFIIEGPEDLPSVAQDLAE 165
                 556666777777999*******************99999999988888988899999988888************************************ PP

                 TTSSEEEEEEGG.GEEEEEE....TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHH CS
        PfkB 218 kgaktvvvtlGk.eGalvve....kdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfan 283
                 ++ + + ++ G  +G    +    +++++ ++  p +   ++ G+G s+++ +++ l++g ++  a+++a 
  CCG91937.1 166 QYGTSFMIKGGHlQGKTTLDvlhhNGKTYSFEL-PRIFSANPHGTGCSMASMIAVFLAQGLDVPNAVERAK 235
                 ***99**99664345544445457666666666.889999****************************996 PP

>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.9e-08   6.6e-05       2     210 ..       5     230 ..       4     239 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.9e-08
                  EEEE-BTTCHHHHHHHHHHHH.CTT-SEEEEEESSTTTCCCCTTTTTCEECCTT.HTTTS....--SSS-SEEEE-TT-SSSHCHHHHCHHHCCC..C CS
  Carb_kinase   2 lvigGsedytGAallaalaal.rlgaglvsvateseaiavlksylpevivhpll.edeqa.kileklerldavviGpGLgrdekikklleevlek..d 94 
                  l+igGs+   GA++   l ++ +lga  ++++t    +a+    ++ ++  p++  ++q+ +il+    ++a+ iG+ L ++e  +k+ e + +   +
   CCG91937.1   5 LIIGGSDCSCGAGIQGDLKTVtNLGAYGTTIIT--SIVAEHPGRVESLFPLPVSiIESQFhSILDFF-PISAIKIGM-LYKKELPEKIAELIQKFriK 98 
                  789999999999988877665367877778887..56666666667777666666345553555555.899999999.77777666655555444114 PP

                  S-EEEE.......GGGGGSGGGG.....TTTTSSEEEE--HHHHHHHCTTTCHHCCSHHHHHHHHHHHHTTEEEEESTT....SE..EEECTTEEEEE CS
  Carb_kinase  95 eplviD.......AdgLnllaqkne..lserkaeviLTPhkkEfkrLlkaivkkeddrlelarelaqklnavvllkgek....dv..ivspegevlin 177
                  +p+viD       +d L+    ++   +  +  ++i TP++ E + L++ i++  +d   +a++la+++++  ++kg +    ++  +  ++g+++  
   CCG91937.1  99 APIVIDpvlaagnGDPLAEPGMEEAlpKNLFPLATIVTPNIEEAEILSGFIIEGPEDLPSVAQDLAEQYGTSFMIKGGHlqgkTTldVLHHNGKTYSF 196
                  6788886665544455555554433677778889******************999******************9998653332223477889999999 PP

                  ----GGG-S.TTHHHHHHHHHHHHHHCTSSHHHH CS
  Carb_kinase 178 stgssalak.GGsGDvLaGligalLaqneasyea 210
                  +      a   G+G  +a +i+ +Laq  +  +a
   CCG91937.1 197 ELPRIFSANpHGTGCSMASMIAVFLAQGLDVPNA 230
                  99998887636***************99876555 PP

>> HK  Hydroxyethylthiazole kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.016        58      55      88 ..      74     107 ..      59     112 .. 0.84
   2 ?    8.0   0.0   0.00045       1.6     143     201 ..     159     224 ..     150     244 .. 0.63

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.016
                 EE-TT--HHHHHHHHHHHHHHHHTT--EEEE-TT CS
          HK  55 lNiGtleekaiealkaAvksakevnrPvvlDPVg 88 
                 + iG l +k+    +a   ++   + P+v+DPV 
  CCG91937.1  74 IKIGMLYKKELPEKIAELIQKFRIKAPIVIDPVL 107
                 7899999988888777778888999*******95 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00045
                 HHHHHHHHHTSEEEEES.......SSEEEEESSEEEEEE-S-GGGGGSTTHHHHHHHHHHHHHTTB CS
          HK 143 avqkvAqklrvvvvvtG.......evDvvsdgkkvyklknGtellgkitasGCllgsvvaaflavk 201
                 ++q +A+++++  ++ G        +Dv+    k+y+ +    + ++  ++GC+++s++a+fla  
  CCG91937.1 159 VAQDLAEQYGTSFMIKGghlqgktTLDVLHHNGKTYSFELPRIFSANPHGTGCSMASMIAVFLAQG 224
                 56777777777776666111111123444444444444444446667789************9965 PP

>> Big_3_3  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.1e-05      0.25      50     117 ..     139     204 ..     116     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.1e-05
     Big_3_3  50 isegkkisdgavvkglenlritladaldkskltsialsGGpasDkVelswveegkdvysleYPrlFPs 117
                 i e+++i  g +++g e+l   +a++l +   ts +++GG  + k  l   ++   +ys e Pr+F +
  CCG91937.1 139 I-EEAEILSGFIIEGPEDLPS-VAQDLAEQYGTSFMIKGGHLQGKTTLDVLHHNGKTYSFELPRIFSA 204
                 3.7788888999999999975.55555555899*********************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1829.65
//
Query:       CCG91938.1  [L=342]
Description: NADPH:quinone reductase or related Zn-dependent oxidoreductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-25   88.4   0.5      7e-25   87.5   0.5    1.4  1  ADH_zinc_N     Zinc-binding dehydrogenase
    6.7e-16   59.6   0.0    1.7e-15   58.3   0.0    1.7  2  ADH_zinc_N_2   Zinc-binding dehydrogenase
    1.9e-11   43.8   0.0    1.1e-10   41.4   0.0    2.3  2  ADH_N          Alcohol dehydrogenase GroES-like domain
     0.0036   16.6   0.2     0.0073   15.6   0.2    1.5  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.025   14.3   0.1      0.035   13.8   0.1    1.3  1  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.5   1.9e-28     7e-25       1     127 [.     171     296 ..     171     299 .. 0.93

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 1.9e-28
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeeef 97 
                 gv l+ +q+A a+Ga+vi  ++seek+e+ak+lGa+e in +++ ++  +++elt+g+g+dv ++++G    le+++k++k+gG++  +G+ ++ + e+
  CCG91938.1 171 GVSLFSMQFALACGAQVIFLSRSEEKIEKAKRLGAKEGINITKEkNWHRKVRELTEGRGADVLIDVLG--GNLEESIKAVKHGGMVCSIGIlVGLKAEI 267
                 899**************************************8888***********************..89*******************8555566* PP

                 EHHHHHHTT-EEEEE-SSCHHHHHHHHHHH CS
  ADH_zinc_N  98 dlrnlllkeksilGsllgslreefkealdl 127
                 d+  ll+++ +i G+ +g+ r  f+++++ 
  CCG91938.1 268 DVVSLLMRQAKIHGIYVGN-RLMFEAMNRA 296
                 *******************.7777766655 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.6   9.5e+03      89     115 ..     114     138 ..      61     140 .. 0.52
   2 !   58.3   0.0   4.7e-19   1.7e-15       1     133 []     203     333 ..     203     333 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.6
                   HHHHHHHHHHHHH----EEEEEEGGGH CS
  ADH_zinc_N_2  89 ileelaalieeGklrpvvdrvfpleea 115
                   +l+e   l eeG+l  +v + +++eea
    CCG91938.1 114 TLAEYIILKEEGAL--PVPKNLSFEEA 138
                   35555555566655..23334556655 PP

  == domain 2  score: 58.3 bits;  conditional E-value: 4.7e-19
                   TT-SEEEETT.STTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadile 91 
                   lGA+e i+ + +++++    + t+g+g Dv +d +gg+ l e+s+k++++gG ++sig    l+a++  +++    r+ k++ +  +  + + + +e
    CCG91938.1 203 LGAKEGINITkEKNWHrkvrELTEGRGADVLIDVLGGN-L-EESIKAVKHGGMVCSIGiLVGLKAEIDVVSLLM--RQAKIHGIY-V-GN-RLM-FE 291
                   8999999888788999999999**************88.5.8******99888999995544666666666644..334444444.1.22.556.9* PP

                   HHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  92 elaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   ++ + i    ++p +d vfp+++ +eA+ +lesg+++GKiVl
    CCG91938.1 292 AMNRAITTLGIKPLIDTVFPFSQYKEAFLRLESGKHFGKIVL 333
                   *****************************************8 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0     3e-14   1.1e-10       2     108 ..      28     128 ..      27     129 .. 0.92
   2 ?   -2.5   0.0       1.3   4.8e+03      52      62 ..     157     167 ..     139     172 .. 0.63

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 3e-14
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvsldGgfaeyvv 100
                 +e+l++++a++++  D  ++kg  ++ ++lpli+  + +Gev++vg++v++++ GdrVv  +++      ++  g  +    +++lg  ldG++aey++
  CCG91938.1  28 KEILVRLQAVSLNYRDWLMVKGLYNPDQALPLIPCSDGAGEVVAVGKAVQSFRPGDRVVGTFFQ------DWLAGPFEKKYAQSVLGGPLDGTLAEYII 120
                 79**********************************************************7765......67888888888999*************** PP

                 ECGGGEEE CS
       ADH_N 101 vpekklvk 108
                 ++e+ +++
  CCG91938.1 121 LKEEGALP 128
                 99988776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
                 S--TT-EEEE- CS
       ADH_N  52 klkvGdrVvve 62 
                 +++ G+ Vvv+
  CCG91938.1 157 TVSPGQTVVVQ 167
                 35667777665 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2     2e-06    0.0073      26      89 ..     158     221 ..     144     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2e-06
                  B---E.EEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHH CS
  AlaDh_PNT_C  26 vepak.vlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeav 89 
                  v+p++ v+v G G + l +++ a + ga+V  l  +++++e+ + lgak   +   +e++ +++v
   CCG91938.1 158 VSPGQtVVVQGSGGVSLFSMQFALACGAQVIFLSRSEEKIEKAKRLGAK-EGINITKEKNWHRKV 221
                  4466516777***********************************9999.455555555555555 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   9.8e-06     0.035      19      85 ..     150     214 ..     136     280 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.8e-06
                    HHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE-HHHHHHHHHC CS
  ELFV_dehydrog  19 eemlkklkldslegkrvaisGsGnvgsyaallltelgakvvavsDssGviydpeGldieellelkee 85 
                    + +++++  +   g++v+++GsG v  + ++++   ga+v+ +s s+  i + + l  +e +++ +e
     CCG91938.1 150 NGIVEEATVS--PGQTVVVQGSGGVSLFSMQFALACGAQVIFLSRSEEKIEKAKRLGAKEGINITKE 214
                    5566664444..799*****************************99999986665544443333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2431.81
//
Query:       CCG91939.1  [L=177]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-15   57.7   1.1      2e-15   57.4   1.1    1.1  1  LptE      Lipopolysaccharide-assembly


Domain annotation for each model (and alignments):
>> LptE  Lipopolysaccharide-assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   1.1   1.1e-19     2e-15       1     105 [.      41     171 ..      41     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 1.1e-19
                 HSEEEEEES.STT..SHHHSHHHHHHHHHHH..CHTTEEEE.S-SSEEEEEEEEEE.........TTSCEEEEEEEEEEEEEEEETT.........S.. CS
        LptE   1 lktvyvppfenes.eprlgqeltnaLrdelarrgrlkvvdv.dadavlegeitsytl........edgtaseyrltltvqvrltdak.........d.. 78 
                 +kt+yvp ++n++  p+l++++tn++++ + ++g+ +++ + dada l ++i+ ++         +  t++ey+l++t++v+l+++k         +  
  CCG91939.1  41 IKTIYVPTVKNKTvIPGLQSMVTNEIIRAIDNDGTMQTSRNvDADAELDVTIVDFNRvilrpeilDPFTTAEYKLIITASVTLINRKlgratikgaQvs 139
                 59**********************************9999659**********************445689**************99998877666155 PP

                 .....SSCCCHHHHHHHHHHHHHHHHHHHHHH CS
        LptE  79 .....adsllakeaeedalrraaeqladqivr 105
                       +++   ea+++ l   ae+la++iv+
  CCG91939.1 140 gssyyFTQTNMPEAQRQDLPLVAEDLANRIVN 171
                 66667444444555566788999*****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1288.96
//
Query:       CCG91940.1  [L=357]
Description: TPR repeats containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-23   81.5   9.8    1.1e-05   25.8   0.0    6.4  6  TPR_6     Tetratricopeptide repeat
    4.1e-21   75.7   9.9    3.9e-17   62.6   4.4    2.3  2  YfiO      Outer membrane lipoprotein
    5.2e-20   71.8   3.0    3.2e-10   40.5   0.0    4.2  4  TPR_16    Tetratricopeptide repeat
    2.1e-15   55.5   7.6      0.001   19.0   0.0    5.4  5  TPR_2     Tetratricopeptide repeat
    6.8e-13   48.3   5.0      0.026   15.3   0.0    5.6  5  TPR_14    Tetratricopeptide repeat
    5.9e-10   38.5  13.4      0.026   14.3   0.0    5.4  6  TPR_1     Tetratricopeptide repeat
    4.7e-09   36.5  11.2    2.9e-05   24.2   0.8    5.2  4  TPR_18    Tetratricopeptide repeat
    1.5e-05   24.8   4.3       0.02   14.6   0.1    3.1  3  TPR_21    Tetratricopeptide repeat-like domain
    1.9e-05   24.5   8.4        1.6    9.1   0.1    5.5  5  TPR_8     Tetratricopeptide repeat
    0.00026   21.4   4.7       0.13   12.8   0.1    3.2  3  TPR_19    Tetratricopeptide repeat
     0.0055   16.9   4.5        8.2    6.7   0.1    3.5  3  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
     0.0085   16.2   0.5         15    5.8   0.0    3.9  4  TPR_9     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.023   14.4   1.0        3.5    7.3   0.0    3.5  4  RPN7      26S proteasome subunit RPN7
       0.35   11.0   8.0        2.1    8.5   0.1    3.2  3  MIT       MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.2   0.00013      0.17       6      31 ..      56      81 ..      53      81 .. 0.83
   2 !   23.0   0.0   6.2e-08     8e-05       1      33 []      88     120 ..      88     120 .. 0.97
   3 ?    0.1   0.0       1.2   1.6e+03      15      31 ..     153     169 ..     131     169 .. 0.70
   4 !   25.8   0.0   8.4e-09   1.1e-05       1      33 []     176     208 ..     176     208 .. 0.96
   5 !   10.1   0.1   0.00085       1.1       1      31 [.     213     251 ..     213     252 .. 0.81
   6 !   10.4   0.1   0.00067      0.86       4      33 .]     275     304 ..     273     304 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00013
                HHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6  6 lalsyrklgdtdkAlealerlikeYP 31
                la+ +++++d+d+Al+a++ li+++P
  CCG91940.1 56 LAKKFEEAKDYDNALKAYRILIRKWP 81
                555467789***************99 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 6.2e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlikeYPdS 33 
                 +A+++++++++k gd   A +a++r i++YP S
  CCG91940.1  88 EAQFRIGQCLEKKGDFLGANKAYDRMIQKYPSS 120
                 79**********99*****************98 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHH-T CS
       TPR_6  15 dtdkAlealerlikeYP 31 
                   d A +++e++i+  P
  CCG91940.1 153 GLDIAADIFESIIRAAP 169
                 56789999**9998766 PP

  == domain 4  score: 25.8 bits;  conditional E-value: 8.4e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlikeYPdS 33 
                 +A ++l+l ++k+++ ++A+++++rl+++YP++
  CCG91940.1 176 QAEFQLGLTRIKQKKFTDAIATFNRLLDKYPNH 208
                 689****************************96 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00085
                 HHHHHHHHHHHHH........HHHHHHHHHHHHHHHH-T CS
       TPR_6   1 dAlyklalsyrkl........gdtdkAlealerlikeYP 31 
                 dA+y +++  + +          t+kA+e +e+ i +YP
  CCG91940.1 213 DAQYEIGYTWYVAsqaseydqSATEKAIEGFEDYIVRYP 251
                 6888888777755558888867999************** PP

  == domain 6  score: 10.4 bits;  conditional E-value: 0.00067
                 HHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   4 yklalsyrklgdtdkAlealerlikeYPdS 33 
                 +++a+ y+++++  +A  ++ ++ik+ P+S
  CCG91940.1 275 FHIAQYYERAKNFKAAYIYYSDVIKQNPTS 304
                 78999999999*****************98 PP

>> YfiO  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   5.7e-06    0.0073      17      76 ..      62     121 ..      47     131 .. 0.93
   2 !   62.6   4.4   3.1e-20   3.9e-17      24     180 ..     157     310 ..     152     323 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.7e-06
                 HHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SSST CS
        YfiO  17 qkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlrlyPthk 76 
                 +++dy +A k+   l  ++P   +a++aq  + +   k++d+  a ++++r +++yP++ 
  CCG91940.1  62 EAKDYDNALKAYRILIRKWPYAVFAPEAQFRIGQCLEKKGDFLGANKAYDRMIQKYPSSS 121
                 679******************************************************986 PP

  == domain 2  score: 62.6 bits;  conditional E-value: 3.1e-20
                 HHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SSSTTHHHHHHHHHHHHHHHHSHSCTTTS-THHHHHHHHHHHHHHHHSTT CS
        YfiO  24 AikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlrlyPthknvdyvlYlrglsalaqarellrskrdpesarqafedfkklvekyPd 122
                 A++ +e++    P +++a+qa+ +l     k++ +++a+a+ +r l +yP+h  +d + Y +g +++ + +     + d++ +++a+e f++ + +yP+
  CCG91940.1 157 AADIFESIIRAAPYGRFAPQAEFQLGLTRIKQKKFTDAIATFNRLLDKYPNHSLADDAQYEIGYTWYVASQAS---EYDQSATEKAIEGFEDYIVRYPS 252
                 788899999999*******************************************************999888...99********************* PP

                 STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHSTTSHHHHHH CS
        YfiO 123 seYaadakkrltelrerLArhElevaefylkreayvaainRvkevlknypdtesveea 180
                     ++ak+ ++el+ +      ++a++y +++++ aa   ++ v+k+ p++ +++ a
  CCG91940.1 253 GDKVEAAKAHIAELKGKTTLGSFHIAQYYERAKNFKAAYIYYSDVIKQNPTSDQAKIA 310
                 ************************************************9999888655 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   2.5e-13   3.2e-10       1      67 [.      54     120 ..      54     121 .. 0.96
   2 ?    1.0   0.1      0.54   6.9e+02      14      42 ..     155     183 ..     153     185 .. 0.84
   3 !   26.7   0.0     5e-09   6.3e-06       2      48 ..     180     226 ..     179     254 .. 0.85
   4 ?    1.6   0.0      0.35   4.4e+02       4      30 ..     278     304 ..     274     310 .. 0.55

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 2.5e-13
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 l+la+ + +a+dyd A++a++++++++p   +a+eA++  g+++ ++g++ +A  +y+++++ +p++
  CCG91940.1  54 LNLAKKFEEAKDYDNALKAYRILIRKWPYAVFAPEAQFRIGQCLEKKGDFLGANKAYDRMIQKYPSS 120
                 67889999*********************************************************87 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.54
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgd 42 
                 d Aa  +e  ++++p   +a++A + lg+
  CCG91940.1 155 DIAADIFESIIRAAPYGRFAPQAEFQLGL 183
                 67999999999999999999999887775 PP

  == domain 3  score: 26.7 bits;  conditional E-value: 5e-09
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqg 48 
                 +l++ ++++++++dA+a ++++l+++p +++a +A+++ g  +++++
  CCG91940.1 180 QLGLTRIKQKKFTDAIATFNRLLDKYPNHSLADDAQYEIGYTWYVAS 226
                 689999***********************************999983 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.35
      TPR_16   4 araalragdyddAaaaleaalkrdpss 30 
                 a+++ ra+++ +A  ++  ++k++p s
  CCG91940.1 278 AQYYERAKNFKAAYIYYSDVIKQNPTS 304
                 455555555555555555555555444 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.5    0.0042       5.3       6      25 ..      55      74 ..      51      79 .. 0.87
   2 !   19.0   0.0   7.9e-07     0.001       1      33 [.      87     119 ..      87     120 .. 0.95
   3 ?   -2.5   0.0       6.1   7.8e+03      23      29 ..     122     128 ..     121     129 .. 0.81
   4 !   16.3   0.0   6.1e-06    0.0078       5      34 .]     179     208 ..     175     208 .. 0.93
   5 !   13.0   0.1   6.9e-05     0.088       5      33 ..     275     303 ..     272     304 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0042
       TPR_2  6 nlGlayyklgdyeeAleafe 25
                nl++  ++++dy+ Al+a++
  CCG91940.1 55 NLAKKFEEAKDYDNALKAYR 74
                8999999************8 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 7.9e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 +ea +++G++++k+gd+  A +a+++ ++ +P 
  CCG91940.1  87 PEAQFRIGQCLEKKGDFLGANKAYDRMIQKYPS 119
                 699****************************96 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 6.1
       TPR_2  23 afekAle 29 
                 +fe+Ale
  CCG91940.1 122 FFEQALE 128
                 6999997 PP

  == domain 4  score: 16.3 bits;  conditional E-value: 6.1e-06
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++lGl  +k++++ +A++ f++ l  +Pn+
  CCG91940.1 179 FQLGLTRIKQKKFTDAIATFNRLLDKYPNH 208
                 89**************************97 PP

  == domain 5  score: 13.0 bits;  conditional E-value: 6.9e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                 + +++ y+++++++ A  ++  +++ +P+
  CCG91940.1 275 FHIAQYYERAKNFKAAYIYYSDVIKQNPT 303
                 789*************************8 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1     0.005       6.5       7      33 ..      56      82 ..      51      86 .. 0.86
   2 !   10.1   0.0   0.00098       1.3       1      34 [.      87     120 ..      87     133 .. 0.91
   3 !   10.9   0.0   0.00053      0.68       2      37 ..     176     211 ..     175     219 .. 0.87
   4 ?    1.0   0.0      0.81     1e+03      13      33 ..     232     252 ..     221     266 .. 0.70
   5 !   15.3   0.0     2e-05     0.026       7      38 ..     277     308 ..     275     311 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.005
      TPR_14  7 laeallalGdpdeAiallrralalaPd 33
                la+ ++++ d+d A++++r +++++P 
  CCG91940.1 56 LAKKFEEAKDYDNALKAYRILIRKWPY 82
                6777899*****************995 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00098
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPdd 34 
                 pea+ ++++ l+  Gd+ +A ++++r+++++P++
  CCG91940.1  87 PEAQFRIGQCLEKKGDFLGANKAYDRMIQKYPSS 120
                 79999***************************87 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00053
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaea 37 
                 +a  +l+     + ++ +Aia ++r+l+++P++  a
  CCG91940.1 176 QAEFQLGLTRIKQKKFTDAIATFNRLLDKYPNHSLA 211
                 6677888999999******************98654 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.81
      TPR_14  13 alGdpdeAiallrralalaPd 33 
                  +  +++Ai+ +++++ ++P+
  CCG91940.1 232 DQSATEKAIEGFEDYIVRYPS 252
                 4556899**********9994 PP

  == domain 5  score: 15.3 bits;  conditional E-value: 2e-05
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeaw 38 
                 +a++++++ ++++A  ++ ++++++P++++a 
  CCG91940.1 277 IAQYYERAKNFKAAYIYYSDVIKQNPTSDQAK 308
                 699************************99886 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.9    0.0011       1.4       6      25 ..      55      74 ..      53      75 .. 0.93
   2 !   10.6   0.0   0.00032      0.41       1      33 [.      87     119 ..      87     120 .. 0.92
   3 ?   -1.9   0.0       2.8   3.5e+03      24      30 ..     123     129 ..     122     130 .. 0.77
   4 !   14.3   0.0     2e-05     0.026       2      34 .]     176     208 ..     175     208 .. 0.93
   5 ?   -3.3   0.0       7.9     1e+04      17      22 ..     236     241 ..     231     244 .. 0.66
   6 !    9.9   0.2   0.00051      0.65       6      33 ..     276     303 ..     274     304 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0011
                HHHHHHHHTT-HHHHHHHHH CS
       TPR_1  6 nlGnayfklgkydeAleyye 25
                nl+  + + ++yd Al++y+
  CCG91940.1 55 NLAKKFEEAKDYDNALKAYR 74
                99999**************6 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00032
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 ++a +++G+++ k+g++  A ++y++ ++ +P+
  CCG91940.1  87 PEAQFRIGQCLEKKGDFLGANKAYDRMIQKYPS 119
                 5899********************999999986 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.8
                 HHHHHHH CS
       TPR_1  24 yekALel 30 
                 +e+ALe 
  CCG91940.1 123 FEQALER 129
                 8999985 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 2e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 +a ++lG++  k++k+ +A++ +++ L  +Pn+
  CCG91940.1 176 QAEFQLGLTRIKQKKFTDAIATFNRLLDKYPNH 208
                 67899***********************99996 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 7.9
                 HHHHHH CS
       TPR_1  17 ydeAle 22 
                  ++A+e
  CCG91940.1 236 TEKAIE 241
                 577776 PP

  == domain 6  score: 9.9 bits;  conditional E-value: 0.00051
                 HHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   6 nlGnayfklgkydeAleyyekALelnPn 33 
                  +++ y + ++++ A  yy+ +++ nP+
  CCG91940.1 276 HIAQYYERAKNFKAAYIYYSDVIKQNPT 303
                 68999**********************7 PP

>> TPR_18  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.011        15     107     144 ..      55      92 ..      43      93 .. 0.82
   2 ?    5.1   0.0     0.017        22     121     144 ..     106     129 ..      97     130 .. 0.85
   3 !   24.2   0.8   2.3e-08   2.9e-05      29     142 ..     157     260 ..     152     263 .. 0.89
   4 ?    3.3   0.2     0.065        83     104     144 ..     274     313 ..     261     314 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.011
      TPR_18 107 sldrsdrdteaakaafrdfkrLlsryPnseYaaDaakr 144
                 +l ++  + +++ +a + ++ L++++P + +a++a+ r
  CCG91940.1  55 NLAKKFEEAKDYDNALKAYRILIRKWPYAVFAPEAQFR 92 
                 55566677888999999******************988 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.017
      TPR_18 121 afrdfkrLlsryPnseYaaDaakr 144
                 a + ++r++++yP+s++ + a +r
  CCG91940.1 106 ANKAYDRMIQKYPSSSFFEQALER 129
                 6678999*********99988776 PP

  == domain 3  score: 24.2 bits;  conditional E-value: 2.3e-08
      TPR_18  29 aieqLealdtryPfGaYaeqaqLDLiYakykskdyelavasidrfirlnPahpkiDyvlYlrglanmaldksslqslvsldrsdrdteaakaafrdfkr 127
                 a++  e++    P+G +a qa+  L  ++ k+k +  a a+ +r +  +P+h   D + Y  g           + +v+++ s+ d++a+++a + f++
  CCG91940.1 157 AADIFESIIRAAPYGRFAPQAEFQLGLTRIKQKKFTDAIATFNRLLDKYPNHSLADDAQYEIGY----------TWYVASQASEYDQSATEKAIEGFED 245
                 667788888899****************************************999988886664..........45788999***************** PP

      TPR_18 128 LlsryPnseYaaDaa 142
                  + ryP+ +  + a+
  CCG91940.1 246 YIVRYPSGDKVEAAK 260
                 ******988777666 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.065
      TPR_18 104 slvsldrsdrdteaakaafrdfkrLlsryPnseYaaDaakr 144
                 s+ ++ +     ++ kaa+  +++++++ P s+ a+ a+++
  CCG91940.1 274 SF-HIAQYYERAKNFKAAYIYYSDVIKQNPTSDQAKIAEQK 313
                 44.455555667889******************99999886 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.6e-05      0.02     116     188 ..      53     131 ..      47     135 .. 0.89
   2 ?    3.7   0.0     0.035        45      62     113 ..     161     212 ..     154     219 .. 0.84
   3 !    6.4   0.6    0.0051       6.6      30     122 ..     230     317 ..     217     335 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.6e-05
      TPR_21 116 rlRLarvllaekkydeAlkt....LeakkeeafaalvaelrGDilvaqgkldeAraaYqaAlaaleeka..rellqlKl 188
                 +l La+   ++k+yd+Alk+    + + + + fa +++ + G  l ++g++  A +aY++ +++  +++  +++l+ Kl
  CCG91940.1  53 QLNLAKKFEEAKDYDNALKAyrilIRKWPYAVFAPEAQFRIGQCLEKKGDFLGANKAYDRMIQKYPSSSffEQALERKL 131
                 5789999999********97333258999999**********************************9999999999998 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.035
      TPR_21  62 aeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelka 113
                 +e+++ + +   +a +a+++l  + ++++++ +A a+++++l+k ++++l++
  CCG91940.1 161 FESIIRAAPYGRFAPQAEFQLGLTRIKQKKFTDAIATFNRLLDKYPNHSLAD 212
                 566666777778999*****************************99999876 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0051
      TPR_21  30 dyqeeqaeeAsalYqqlqeaveakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarv 122
                 +y ++ +e+A + ++       ++d  k+++a +++a+  g+t    l+++  A+    a++++aA   ++ v+++++  + +++a+ ++ ++
  CCG91940.1 230 EYDQSATEKAIEGFEDYIVRYPSGD--KVEAAKAHIAELKGKT---TLGSFHIAQYYERAKNFKAAYIYYSDVIKQNPTSDQAKIAEQKIIQL 317
                 4566666777777777765444444..5577777777777777...8999************************************9998876 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.3      0.13   1.6e+02      11      25 ..      60      74 ..      53      76 .. 0.79
   2 ?    5.9   0.0     0.014        17       2      24 ..      88     110 ..      87     115 .. 0.84
   3 ?   -0.3   0.1       1.3   1.7e+03      21      31 ..     120     130 ..     108     132 .. 0.79
   4 !    6.6   0.0    0.0081        10       5      29 ..     179     203 ..     176     208 .. 0.89
   5 !    9.1   0.1    0.0012       1.6       5      33 ..     275     303 ..     274     304 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.13
                HHHTT-HHHHHHHHH CS
       TPR_8 11 ylklgdyeeAkeyye 25
                 ++ +dy++A ++y+
  CCG91940.1 60 FEEAKDYDNALKAYR 74
                567799****99997 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.014
                 CHHHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyy 24 
                 ea +++g++++k+gd+  A ++y
  CCG91940.1  88 EAQFRIGQCLEKKGDFLGANKAY 110
                 789************97777776 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.3
                 HHHHHHHHHHH CS
       TPR_8  21 keyyekaleld 31 
                  +++e+ale +
  CCG91940.1 120 SSFFEQALERK 130
                 679*****975 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0081
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekale 29 
                 ++lg++ +k++++  A++++++ l+
  CCG91940.1 179 FQLGLTRIKQKKFTDAIATFNRLLD 203
                 78*******************9986 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.0012
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +++++ y+  +++++A  yy  +++ +p+
  CCG91940.1 275 FHIAQYYERAKNFKAAYIYYSDVIKQNPT 303
                 689**********************9995 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1    0.0013       1.7       3      57 ..      62     119 ..      60     129 .. 0.92
   2 !   12.8   0.1    0.0001      0.13      10      61 ..     157     211 ..     154     217 .. 0.75
   3 ?   -1.1   0.2       2.2   2.9e+03       5      28 ..     285     308 ..     278     311 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0013
      TPR_19   3 aegdyaeAlalleqalqedpk...naearllLAeallalgqldeAealLdalpeedpd 57 
                 +++dy++Al++++ ++ + p     +ea+ +  ++l + g++  A ++ d+  +++p 
  CCG91940.1  62 EAKDYDNALKAYRILIRKWPYavfAPEAQFRIGQCLEKKGDFLGANKAYDRMIQKYPS 119
                 689*****************9************************9999999888887 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.0001
      TPR_19  10 Alalleqalqedpk...naearllLAeallalgqldeAealLdalpeedpddary 61 
                 A++++e+++ ++p     + a  +L    ++++ +++A+a+ ++l++++p+++ +
  CCG91940.1 157 AADIFESIIRAAPYgrfAPQAEFQLGLTRIKQKKFTDAIATFNRLLDKYPNHSLA 211
                 6777777777777777755555555777799999999999999999999996654 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.2
      TPR_19   5 gdyaeAlalleqalqedpknaear 28 
                 +++ +A  +++ +++++p ++ a+
  CCG91940.1 285 KNFKAAYIYYSDVIKQNPTSDQAK 308
                 577788888888888888877776 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.015        20       3      54 ..      64     119 ..      62     127 .. 0.83
   2 !    6.7   0.1    0.0064       8.2      20      56 ..     172     209 ..     155     246 .. 0.80
   3 ?    4.9   0.2     0.025        31      28      58 ..     276     307 ..     260     312 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.015
                 T-HHHHHHHHHHHH....HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC CS
      ANAPC3   3 nnyknAiflaerll...aaetespedayllAlclylngqykrAyellrka.klnsk 54 
                 ++y+nA+  +  l     +    pe+ +  ++cl + g++  A + ++++ +++++
  CCG91940.1  64 KDYDNALKAYRILIrkwPYAVFAPEAQFRIGQCLEKKGDFLGANKAYDRMiQKYPS 119
                 789********9996554889999***************99998888887666555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0064
                 H--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-H CS
      ANAPC3  20 tespedayllAlclylngqykrAyellrka.klnsksl 56 
                 +  p++ + l+l+  ++++++ A+  ++++ ++++++ 
  CCG91940.1 172 RFAPQAEFQLGLTRIKQKKFTDAIATFNRLlDKYPNHS 209
                 667889999999999**********9999999998887 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.025
                 HHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHH CS
      ANAPC3  28 llAlclylngqykrAyellrka.klnskslgc 58 
                   A+ + +++++k Ay ++++  k+n++s ++
  CCG91940.1 276 HIAQYYERAKNFKAAYIYYSDViKQNPTSDQA 307
                 469****************9999999998876 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.012        15      28      64 ..      86     122 ..      60     130 .. 0.71
   2 ?    1.5   0.0      0.26   3.3e+02      34      65 ..     180     211 ..     174     217 .. 0.74
   3 ?    3.5   0.0     0.062        79      44      72 ..     235     263 ..     230     264 .. 0.89
   4 ?   -0.8   0.0       1.4   1.8e+03      38      69 ..     280     311 ..     277     314 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.012
       TPR_9  28 dpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 +pe  +  G++l++ G++ +A ++ ++++++ p+   
  CCG91940.1  86 APEAQFRIGQCLEKKGDFLGANKAYDRMIQKYPSSSF 122
                 5666677799**********************98765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.26
       TPR_9  34 dRGlllaqlGclsaAladLeaylalapdapda 65 
                   Gl + ++  +  A+a +++ l++ p+   a
  CCG91940.1 180 QLGLTRIKQKKFTDAIATFNRLLDKYPNHSLA 211
                 56888888888888888888888888855544 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.062
       TPR_9  44 clsaAladLeaylalapdapdaeairaqL 72 
                 ++++A++ +e y+   p+ + +ea++a++
  CCG91940.1 235 ATEKAIEGFEDYIVRYPSGDKVEAAKAHI 263
                 6899*********************9986 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.4
       TPR_9  38 llaqlGclsaAladLeaylalapdapdaeair 69 
                  +++  +++aA       + ++p  ++a  ++
  CCG91940.1 280 YYERAKNFKAAYIYYSDVIKQNPTSDQAKIAE 311
                 56777778888888888888888888877665 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0027       3.5      31      62 ..      45      76 ..      37      81 .. 0.83
   2 ?   -0.5   0.0      0.69   8.9e+02      39      68 ..      90     119 ..      87     124 .. 0.81
   3 ?   -0.5   0.0      0.67   8.6e+02     120     142 ..     182     204 ..     174     214 .. 0.77
   4 ?    2.1   0.2      0.11   1.4e+02      40      72 ..     275     308 ..     256     310 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0027
                -HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTC CS
        RPN7 31 gkeeirrakldlaehYlkigdleeAlkaysri 62
                 + +  r +l+la+ + ++ d+++Alkay+ +
  CCG91940.1 45 LSASSSRDQLNLAKKFEEAKDYDNALKAYRIL 76
                566778899********************974 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.69
                 HHHHHHHHHHCT-HHHHHHHHHTCCCC--S CS
        RPN7  39 kldlaehYlkigdleeAlkaysrireycts 68 
                 + ++++   k gd+  A kay r++++  s
  CCG91940.1  90 QFRIGQCLEKKGDFLGANKAYDRMIQKYPS 119
                 56678888999************8887655 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.67
                 HHHHHHTT-HHHHHHHHCTS-GG CS
        RPN7 120 GlallairkfkeAaellldilst 142
                 Gl  ++++kf++A  ++   l  
  CCG91940.1 182 GLTRIKQKKFTDAIATFNRLLDK 204
                 88889999999998888665554 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.11
                 HHHHHHHHHCT-HHHHHHHHHT.CCCC--SHHHH CS
        RPN7  40 ldlaehYlkigdleeAlkaysr.ireyctslkhk 72 
                   +a++Y ++ +++ A  +ys  i +  ts ++k
  CCG91940.1 275 FHIAQYYERAKNFKAAYIYYSDvIKQNPTSDQAK 308
                 5689*****************9555555555555 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0017       2.1       7      28 ..      53      74 ..      48      78 .. 0.89
   2 ?   -1.6   0.1       2.3     3e+03       8      24 ..     225     240 ..     224     245 .. 0.67
   3 ?    6.0   0.4      0.01        13       9      29 ..     276     296 ..     272     300 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0017
         MIT  7 lvkkAveeDnagnyeeAlelYk 28
                 ++ A + ++a++y+ Al++Y+
  CCG91940.1 53 QLNLAKKFEEAKDYDNALKAYR 74
                678899***************7 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.3
         MIT   8 vkkAveeDnagnyeeAl 24 
                 +++A e+D++   e+A+
  CCG91940.1 225 ASQASEYDQS-ATEKAI 240
                 7889999984.455555 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.01
         MIT   9 kkAveeDnagnyeeAlelYke 29 
                 + A  +++a+n+++A+ +Y++
  CCG91940.1 276 HIAQYYERAKNFKAAYIYYSD 296
                 67999**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2377.47
//
Query:       CCG91941.1  [L=397]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-11   41.9   0.0    1.8e-10   41.0   0.0    1.3  1  DUF4912   Domain of unknown function (DUF4912)


Domain annotation for each model (and alignments):
>> DUF4912  Domain of unknown function (DUF4912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0     1e-14   1.8e-10       7     114 ..      76     172 ..      73     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1e-14
     DUF4912   7 vllprdpewlyayWeiseetleagaksqeasklvLRvyDvtgidldgenahsvfeievdeearnwYinvpkpdrdylvelgyld.edgkflvlarSnvv 104
                  l ++dp+ l+ayW + ++++    ++ e+s++v+R++        ++  +   e +++++++  Y    kp+++y +e+g++  ++++f+++a+S ++
  CCG91941.1  76 YLFAVDPHALHAYWIMDQKAF----RAFEKSRWVFRLV--------SNGSQLEAELPLEKSTHRIYYTKAKPNTRYHAEIGFYIsSSNHFILIAKSPEA 162
                 57899************9999....8899*********........3333347899*************************88835669********** PP

     DUF4912 105 rtpraspsdn 114
                 +tp+ s+s++
  CCG91941.1 163 HTPPLSFSAK 172
                 *****99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2543.39
//
Query:       CCG91942.1  [L=531]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.9e-42  143.6   1.6    9.9e-41  140.0   1.6    2.0  1  Glyco_hydro_57  Glycosyl hydrolase family 57
    2.2e-30  105.1   2.9    1.1e-29  102.8   0.1    2.8  3  DUF1957         Domain of unknown function (DUF1957)
  ------ inclusion threshold ------
       0.14   12.2   0.1       0.62   10.1   0.1    2.2  2  TraY            TraY domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_57  Glycosyl hydrolase family 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.0   1.6   1.7e-44   9.9e-41       1     321 [.      10     402 ..      10     408 .. 0.84

  Alignments for each domain:
  == domain 1  score: 140.0 bits;  conditional E-value: 1.7e-44
                     EEEEEE-----TTS-.SSSSSHHHHHHHHHHTHHHHHHHHHHHHHTT----EEEEE-HHHHHHHT-H..HHHHHHHHHHHHHHHHHHHHH---HH CS
  Glyco_hydro_57   1 afvfhqHqplykkpg.kgeytlpwvrehaaedYiklalilekfpkvhvtfeLsgsLiaqLeeylnge..kksylpateellelieeglerctelk 92 
                     a+ +h H+p++++p+ ++ ++++w++e+++e Yi+l+++le++ + + + +L+ sL++ L  +l+++   ++y ++    +el  +++er+    
      CCG91942.1  10 ALLLHAHLPFVRHPEdEEVLEEDWLFEAITECYIPLLWMLEELYQAAIRCKLTLSLSPTLCSMLKDPllIQRYKRYLLKRIELCSKEIERYAAAD 104
                     6889**********9667799**********************************************************************9988 PP

                     ..HHHHHHHHHHHHHHHHHHHHHT.TT-HHHHHHHHHHCTSEEEEEE-TT-B-GGG-S-.HHHHHHHHHHHHHHHHHHHSS--SBEE-GGG-B-- CS
  Glyco_hydro_57  93 ..ldlavlfnlaisgplleqiqkwlnkevlelfrelqesgqvElltspyyHpllpllpd.sedieaqvkkarelyeeyfgqePrgfwlpElavsp 184
                         l++ f  + +  + +++ +   +++l +f+++ e+  +El+ts+++H++lpll+  ++++ aq+  a+e + + f+  P+gfwlpE+ + p
      CCG91942.1 105 peRLLLAKFYKERFQNVWKSFTEVYAEDILGQFKKYHEKSLLELVTSSATHGYLPLLKNpKQAVNAQIFVAIESFFDSFQTYPKGFWLPECGYYP 199
                     432333334444444444466666699******************************9889********************************** PP

                     SHHHHHHHTT--EEEE-C.................................................-----------...-TTS-EE-TTS... CS
  Glyco_hydro_57 185 eileilaelGfeylftde.................................................laeiledkske...spyrpyllkngg.. 225
                      i+ +l+ +++++++ +                                                  ++e+  d   e   ++ rpy l++g+  
      CCG91942.1 200 GIEFFLQSAEIRWFVLEAhgllfseprpflglfspiytpsgpaafgrdslsskevwsaqegypgdpvYREFYWDLGFEsdlDYIRPYILPTGQrk 294
                     ******************77777777777777777777777777777777666666655555555553333332222246677777777777777 PP

                     ...-EEEE--CHH-TTTSGGG-..............TTSB..................-TT---TTT--BB-TT-S---HHHHHHHHHHHHHHHH CS
  Glyco_hydro_57 226 ...iavffRdreLsddigFrys..eqypleavddfinwlk.kvkka.......ksevvtialdgEnwghypetgkkeFleklyeeleenglielv 307
                        i+++ + +++ ++  ++ +  +q ++e +++fi   +  +kka        + +++   d E +gh+   g + Fl++l ++ ++ +++el 
      CCG91942.1 295 ftgIKYYRITGKTEQKALYNPQkaQQRAKEHAENFIMKREeAIKKAaplfptfTKPILLCPFDCELFGHWWFEGPL-FLKELIKKAHQSEILELT 388
                     7777777777777777777666887778888999988877455555999999999999****************98.****************** PP

                     HHHHHHHHHSS-EE CS
  Glyco_hydro_57 308 tpsefikklkpkgl 321
                     tp e++ +++++++
      CCG91942.1 389 TPLEYLHRYPTQQI 402
                     *********99986 PP

>> DUF1957  Domain of unknown function (DUF1957)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.58   3.5e+03      53      72 ..     112     131 ..     110     151 .. 0.78
   2 ?    1.2   0.1      0.08   4.8e+02      53      67 ..     316     330 ..     310     342 .. 0.81
   3 !  102.8   0.1   1.8e-33   1.1e-29       1     101 []     430     530 ..     430     530 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.58
                 HHHHHHHHHHHHHHHHHHHH CS
     DUF1957  53 eYAekrikehlerftelyea 72 
                 ++ ++r+++  + fte+y++
  CCG91942.1 112 KFYKERFQNVWKSFTEVYAE 131
                 56789999999999999875 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.08
                 HHHHHHHHHHHHHHH CS
     DUF1957  53 eYAekrikehlerft 67 
                 + A++r+keh+e+f 
  CCG91942.1 316 QKAQQRAKEHAENFI 330
                 5699********995 PP

  == domain 3  score: 102.8 bits;  conditional E-value: 1.8e-33
                 HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHBTHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHS---S--... CS
     DUF1957   1 hlhkaeermvelakkfpeadelkervlnqaaRElLLaqssdWafiittgtaveYAekrikehlerftelyealesgeideelleeleekdniFpeidyr 99 
                 hlh+a+  +vel++k+++ ++++ r l+qaaRElLLaq+sdW+f+i++ ta+eYA  r+ +hl+rf el+e + +++i+++lle +e +dn+Fp ++ +
  CCG91942.1 430 HLHEAAYLLVELVRKYKNGNKQTVRSLKQAARELLLAQASDWPFLISKSTAKEYAFLRVITHLNRFSELCEGIIQQKINKSLLEYCEYTDNLFPSLNLN 528
                 89***********************************************************************************************98 PP

                 .- CS
     DUF1957 100 vy 101
                  +
  CCG91942.1 529 YF 530
                 76 PP

>> TraY  TraY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1    0.0001      0.62      25      42 ..     481     498 ..     476     505 .. 0.85
   2 ?   -2.4   0.0      0.86   5.1e+03       7      20 ..     505     518 ..     502     519 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0001
        TraY  25 rkEAqlRLkdHLkrFpdi 42 
                 + +A lR++ HL+rF+++
  CCG91942.1 481 KEYAFLRVITHLNRFSEL 498
                 579************987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.86
        TraY   7 eetnklLeasaers 20 
                 +++nk L + +e +
  CCG91942.1 505 QKINKSLLEYCEYT 518
                 799****9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 3562.30
//
Query:       CCG91943.1  [L=327]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-34  118.7   0.0    2.7e-34  118.4   0.0    1.1  1  DUF1460   Protein of unknown function (DUF1460)


Domain annotation for each model (and alignments):
>> DUF1460  Protein of unknown function (DUF1460)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0   1.5e-38   2.7e-34       2     215 .]      65     289 ..      64     289 .. 0.91

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 1.5e-38
                 HHHHTTT-BB-TT---S-TT-S-S-SS-SS-B-HHHHHHHHHHHHHBSS.......HHHHHHHHHHHHBGGG--..STTTB--STTTHHHHHHHT.SEE CS
     DUF1460   2 israflgtpYkagtLiesaeekeklvirfdglDCftyvetvlalarsss.......eeeFaknLkklRYkdgkv..sflsRkHffsdWiannqkr.llr 90 
                 i+ +++gtpY+  tL e  ++ e++ ++f+++DC t+ e  la+ar  +        e+  k ++  RY++g+   s+lsR Hf  + + +nqkr ll 
  CCG91943.1  65 IGLYLVGTPYRHYTL-EIDDQIESPSVNFQAMDCWTFYEISLAFARMLHydesfwsPETLLKLIEIERYRNGECtgSYLSRIHFLEELFVDNQKRgLLV 162
                 78899**********.777777***********************9988655555444455556667******9999********************** PP

                 E-GGG-B-TT.-EEE--EEEHHHHHHTHHHHHHHHHHHHHHHTT-..-EEEEEEHHHH-HHHHTTS-TT-EEEEEEEES-EEEEEEEEEEEETTE.EEE CS
     DUF1460  91 dvtaeisnkk.aktlkalvtkkkkynqkadeeellaglkvvekal..kklkYipkealdqavlsrlktGdiiaivtektgLdVsHvGlvirknde.lvl 185
                 d t ++++   ++++++++   ++y+  +++  ll+ ++ +e+++   k+ +ipk+a+  ++  ++k+Gdiiai+t++     sHvG+++r++++ l++
  CCG91943.1 163 DKTRSLGGVPiHRKVREMTVGWHQYRYLRHNPTLLPAMAKIEERVsaLKVYHIPKAAV-PSIEPKIKNGDIIAITTHDLHSYTSHVGIAYRDSQGiLHF 260
                 ********9899*********************************55559********.9********************************999789* PP

                 EEEETTTTE..EEEEEHHHHHHHHTT-SS- CS
     DUF1460 186 rhASslkkkkkvvdeplldylkkkksssgi 215
                 +hASs++++ + +d+ l+dyl++  s+ gi
  CCG91943.1 261 LHASSTHHQ-VYIDKRLSDYLNSIASDAGI 289
                 ********6.99***********9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2292.89
//
Query:       CCG91944.1  [L=401]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2868.37
//
Query:       CCG91945.1  [L=144]
Description: Arsenate reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-25   90.8   0.0    1.2e-25   90.6   0.0    1.0  1  LMWPc     Low molecular weight phosphotyrosine protein phosph


Domain annotation for each model (and alignments):
>> LMWPc  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   6.4e-30   1.2e-25       1     137 [.       7     136 ..       7     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 6.4e-30
                 EEEEESSSSSHHHHHHHHHHHHHHHTT-CCCEEEEEEESTSTTT-B--HHHHHHHHHTTS--TT-BB-BS-HHHHH...HSSEEEESSHHHHHHHHHHC CS
       LMWPc   1 vlfvClgNicRSpmAealfrkelekagleekvevdSaGtgalvgkradpravevlkekgislsghvarqlskeela...elDlilamdeenkrelesla 96 
                 vlf C+gN++RS+mAea+++++      + +++++SaG+   ++  ++p a+e+l+ +gi+++g ++++l++   a    +D+++++++++++e+++l 
  CCG91945.1   7 VLFLCTGNSARSIMAEAILNHYS-----GGRFRAYSAGSR--PKGLVHPLALETLRSHGIPIDGLRSKPLTEFLQAdapAIDYVVTVCSSAAKEACPLF 98 
                 89********************4.....568*********..****************************98765511168****************** PP

                 CTTGGGGEEEGGGGSSTSS---HT......TSSHHHHHHHHHHHHHH CS
       LMWPc  97 pekekakvkllgeyteqldieDPy......ygeieafeevldeieea 137
                 p+k++          e++d++DP+       +++eaf++++d + ++
  CCG91945.1  99 PKKAT---------IEHWDLPDPAavegdiDKQKEAFQKIFDVLHQR 136
                 **442.........579*******87555555588888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 980.12
//
Query:       CCG91946.1  [L=122]
Description: Transcriptional regulator containing HTH domain,ArsR [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-11   42.6   0.0    6.5e-11   42.1   0.0    1.2  1  HTH_20           Helix-turn-helix domain
    1.1e-06   28.4   0.7    7.7e-06   25.7   0.1    2.2  2  HTH_5            Bacterial regulatory protein, arsR family
     0.0027   18.0   0.0     0.0039   17.5   0.0    1.3  1  Penicillinase_R  Penicillinase repressor


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   1.1e-14   6.5e-11       3      60 ..       9      68 ..       7      69 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 1.1e-14
                HHHHHS-HHHHHHHHHH..STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
      HTH_20  3 iaeALahPvRrrilraL..araegltaselaerldlskntlsyHLrvLeeagLvevvreg 60
                i+ ALah++R +i+++L  a+ +g +++elae l+++ +tls+HL+ L    L+e +  g
  CCG91946.1  9 ILNALAHKTRIEIFKLLikAGSKGSCPGELAEKLQVPLTTLSFHLHHLKNSTLIEATQKG 68
                899**********************************************9****988766 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.049   2.9e+02       2      12 ..       4      14 ..       3      16 .. 0.86
   2 !   25.7   0.1   1.3e-09   7.7e-06       2      46 ..      16      63 ..      15      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.049
                HHHHHHHHHHT CS
       HTH_5  2 ptRlkILklLa 12
                +t l IL++La
  CCG91946.1  4 KTALLILNALA 14
                789*******8 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 1.3e-09
                HHHHHHHHHHTT..SS.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  2 ptRlkILklLae..ge.lcvcelaeelglsqstvShHLkkLreaGLVe 46
                +tR++I klL +  ++  c +elae+l+++  t+S HL  L+++ L+e
  CCG91946.1 16 KTRIEIFKLLIKagSKgSCPGELAEKLQVPLTTLSFHLHHLKNSTLIE 63
                8************64469************************998876 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.6e-07    0.0039      26     103 ..      37     111 ..      19     119 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.6e-07
                      T--GGG---HHHHHHHHHHHHHTTS-EEEEETTEEEEE----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Penicillinase_R  26 eleeekelaysTVktllrrLvkKgllsrekegrafiYsplvseeeavasavkqlldklfegsvkelvaafveeeklse 103
                      el+e+ ++  +T    l +L +  l+++ ++gr+++Y++  ++   +a+    ll+  ++++v++l++ f + ++ +e
       CCG91946.1  37 ELAEKLQVPLTTLSFHLHHLKNSTLIEATQKGRQIVYYADFEK---IAKLIGYLLEDCCGKDVESLIQFFCKTNEQEE 111
                      688999999******************************9976...689999******************99965444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 872.85
//
Query:       CCG91947.1  [L=356]
Description: arsenite efflux pump ACR3 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-32  110.9  13.4    6.1e-32  110.9  13.4    2.2  2  SBF       Sodium Bile acid symporter family
    0.00032   20.1  24.2    0.00041   19.8  24.2    1.1  1  SBF_like  SBF-like CPA transporter family (DUF4137)


Domain annotation for each model (and alignments):
>> SBF  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9  13.4   6.8e-36   6.1e-32       4     194 ..      65     258 ..      62     259 .. 0.93
   2 ?   -1.7   2.0      0.22     2e+03       9      28 ..     268     287 ..     260     347 .. 0.47

  Alignments for each domain:
  == domain 1  score: 110.9 bits;  conditional E-value: 6.8e-36
         SBF   4 LilmmfpmglkveveklkellkrpkalllglvlqwvikPllmfilakillrdl.......klepelavGlilvglapggamsnvwtylakGdlelsvvl 95 
                 + lm++pm++k++++ l+++ +  + +l++l+++w+ikP+ m  + +++l+ +       +   ++++Glil+++ap++am+ vw+ l  Gd   ++  
  CCG91947.1  65 VWLMIIPMLMKIDFSVLHRVRTHTRGMLVTLLVNWAIKPFSMAFFGWLFLKKIffqllppDQLDSYIAGLILLAAAPCTAMVFVWSHLCLGDPYFTLCQ 163
                 679********************************************999877899999977889********************************** PP

         SBF  96 valstllaillt.PlllyllaksleqttlkvpieeivksvlivviiPliaGillryillkhkGrewfeskllpavspisligllltivvifalkgeliv 193
                 val+ +++++ + P++  ll  s     l+vp+ ++++sv+ +++iPl+  + lr  +lk  G++ +  ++l+++   +l++ll t++++f ++g++i+
  CCG91947.1 164 VALNDTIMVFAFaPIVGLLLGVSS----LHVPWGTLLLSVIFYILIPLLFSQWLRARILKEGGKQKLD-RVLQLLHNPTLFALLATLILLFGFQGKVIL 257
                 ********9999566666666555....********************************88888877.99**************************98 PP

         SBF 194 e 194
                 +
  CCG91947.1 258 K 258
                 7 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.22
         SBF   9 fpmglkveveklkellkrpk 28 
                 +p++++v ++++ +++ ++k
  CCG91947.1 268 IPILVQVYFNSALAYMLNRK 287
                 44444444444444444433 PP

>> SBF_like  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8  24.2   4.5e-08   0.00041       3     296 ..      28     334 ..      26     345 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.5e-08
    SBF_like   3 fllllilvillAslvPvfakaggtikae...yvikygValiFllsGlslsteellanlrnwrlhllvllisflltplivlalvsllkaald.....pe. 92 
                   l++ + i l+ l+P + +  g i+      v+++ V l+ +   ++++ + l +  ++ r  l++ll++  + p  ++ +  l+ +        p+ 
  CCG91947.1  28 VALCIGAGIGLGKLFPGLFQFLGSIELMhvnLVVGFFVWLMIIPMLMKIDFSVLHRVRTHTRGMLVTLLVNWAIKPFSMAFFGWLFLKKIFfqllpPDq 126
                 566777778888888876555555544300044444555555556678888888888899999999999999998888887777665421133444445 PP

    SBF_like  93 ...lliGllllaalPtTvssnvvmtsqAgGnealalceavignllGvfltPalvqlllsgssvsvdyaevlkklllsvllPlvvGqvlq.kifpklvkr 187
                     ++Gl+llaa+P+T ++  v      G+   +lc++++   + vf+ +++v+lll++ss +v ++++l ++++ +l+Pl++ q l+ +i+++  k+
  CCG91947.1 127 ldsYIAGLILLAAAPCT-AMVFVWSHLCLGDPYFTLCQVALNDTIMVFAFAPIVGLLLGVSSLHVPWGTLLLSVIFYILIPLLFSQWLRaRILKEGGKQ 224
                 5669*************.56788999***************************************************************7778877666 PP

    SBF_like 188 .lkkllkkvdslvlllivytsf.stafaqgaftsvshiillvifnvallLllvvlvillllarllklskedeiavlfcgsaKslalgvplisvlfgsnp 284
                  l+++l+ + + +l  +  t +    f+ +++ + + iill+ + + +  ++   +++++l r +++ + ++    ++g+     l+v  + +l+g ++
  CCG91947.1 225 kLDRVLQLLHNPTLFALLATLIlLFGFQGKVILKNPFIILLLAIPILVQVYFNS-ALAYMLNRKFGVAHCAAGPSALIGASNFFELAVATAISLYGLDS 322
                 468899999877777666665514569999999999999999999999999988.678999*****999999999999999999999999999999988 PP

    SBF_like 285 qlgllllPllly 296
                  ++l+++  +l+
  CCG91947.1 323 GAALATVVGVLI 334
                 888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2498.16
//
Query:       CCG91948.1  [L=226]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1766.48
//
Query:       CCG91949.1  [L=339]
Description: Dehydrogenase (Flavoprotein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-05   22.7   0.0    7.5e-05   22.1   0.0    1.3  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00024   21.2   0.1    0.00057   20.1   0.1    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00026   20.4   0.1       0.12   11.7   0.0    2.1  2  FAD_binding_3  FAD binding domain
    0.00036   21.0   0.0    0.00078   20.0   0.0    1.6  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    0.00038   19.6   0.0    0.00046   19.3   0.0    1.1  1  SE             Squalene epoxidase
  ------ inclusion threshold ------
      0.013   15.1   0.6      0.074   12.6   0.5    2.0  2  DAO            FAD dependent oxidoreductase
      0.031   13.0   0.0       0.12   11.1   0.0    1.9  2  HI0933_like    HI0933-like protein
       0.11   11.6   0.0       0.19   10.7   0.0    1.4  1  FAD_binding_2  FAD binding domain
       0.14   11.2   0.0        1.1    8.3   0.0    2.0  2  GIDA           Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.8e-08   7.5e-05       3     110 ..       4     134 ..       2     165 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.8e-08
                  EEEE--SHHHHHHHHHHHHHTS-EEEEE.....TTHCHHHCSHHHHCHHHHHHHHHHHHH............................HHHHCHHHHC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxxxxx RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaqagakvtlve.....legtclnggcllskallgvaedaeias............................evvkklnqgi 67 
                  + +iGgG AGla+ + l+++++ v+++e     l++ c  +   l++++ +  + + i+                                       
   CCG91949.1   4 ITIIGGGLAGLALGIGLRRYKIPVAVYErndypLKKVCGEFLSGLPQKVIQQLGIRPILDrfplassaslsigdsqptllhftlpvylT--------A 93 
                  78*************************86666666666555555566666666666666689999999999999888887666533321........3 PP

                  CCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  68 elllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGss 110
                  + +l++e  ++  +++   ++k++++   ++  +++vlAtG +
   CCG91949.1  94 RERLDTEFAQLFVDHGGSLYTKTQCDP--TLCQEAVVLATGKK 134
                  344445566666666556666777766..89999999999954 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   2.9e-07   0.00057       1      30 [.       6      35 ..       6      37 .. 0.96

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.9e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr 30
                   I+G+Gl+Gl++   L+++++ v ++e++d+
     CCG91949.1  6 IIGGGLAGLALGIGLRRYKIPVAVYERNDY 35
                   9**************************986 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   5.8e-05      0.12       4      47 ..       4      47 ..       2      71 .. 0.81
   2 !    6.7   0.0    0.0018       3.6     285     325 ..     239     279 ..     221     295 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.8e-05
                   EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEH CS
  FAD_binding_3  4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnq 47
                   + I+G+G+aGl l+  L+++ + v + e+ +   ++  ++ l+ 
     CCG91949.1  4 ITIIGGGLAGLALGIGLRRYKIPVAVYERNDYPLKKVCGEFLSG 47
                   67******************999999999887777666666555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0018
                    TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTS CS
  FAD_binding_3 285 rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGe 325
                     +   GDA  + pP  G G+ +a++ a      L+a  +G+
     CCG91949.1 239 PMVALGDAFGVLPPFLGNGMAMAMESAALALDDLIAYAQGS 279
                    55668*********************999999999988875 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.9e-07   0.00078       2      60 ..       4      63 ..       3      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.9e-07
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievlln 60
                ++++GgG+ gl l+  l++++  V v er+d +l ++++e +s + q+ ++++gi+ +l+
  CCG91949.1  4 ITIIGGGLAGLALGIGLRRYKIPVAVYERNDYPLkKVCGEFLSGLPQKVIQQLGIRPILD 63
                78*****************************************999*9999999987665 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.3e-07   0.00046      27     208 ..     137     314 ..     117     331 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.3e-07
          SE  27 tssfvGlvlknaelpkknkghvilgkpspvllYqisstetRilveikskklPsiangelkeylkeevaPqlPkelrksfkkaleegklrsmpnkflpas 125
                     +Gl ++   ++ k+ +++  +k  +v l +i  + + +   +k+kk   +++ el  ++ ++ + + P +  +  ++   e+++ ++p+ +l  +
  CCG91949.1 137 GGPWIGLKVHLQGIELKHDLEMYAAKDGYVGLCKIDHSTVNLCGLFKKKKFSVTSKKELLAFFLKTSQLAKPYHYLE--EANFMEKSFVAIPSFSLGFQ 233
                 55556666666666666666666666666666666666666555555666666666677666666655555555444..4567889999********** PP

          SE 126 knekkGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvleelksfyvkRkeldavvnvLsialyslfaad 208
                 +++++ ++ lGDa+ +  P  g Gm++a++ ++l  + l      + +++ +e+l++ + k k++ a   +L+  l+ l+  +
  CCG91949.1 234 HTKSEPMVALGDAFGVLPPFLGNGMAMAMESAALALDDLIAY--AQGSKSWTETLRQIHHKLKKTFALRITLGLCLHPLLFKK 314
                 ******************************998865555444..478888999999999998888888889999998887655 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5   3.7e-05     0.074       2      31 ..       4      35 ..       3      39 .. 0.88
   2 ?   -0.4   0.0      0.35   6.9e+02     194     232 ..     125     173 ..      92     189 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.7e-05
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSS CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdi 31
                + iiGGG +Gl+    L r +  V+++e++d 
  CCG91949.1  4 ITIIGGGLAGLALGIGLRRYKipVAVYERNDY 35
                78***************555688******965 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.35
                 EEEEE--......GGGHH.HH..HTTCTT..TSEEEEEEEEEEEEEECCT CS
         DAO 194 davVnaa......Gawsd.ll..gllkel..dlpispvrgqvlvlkplse 232
                 +avV+a+      G+w + ++  +++ el  dl +++++  ++ l++++ 
  CCG91949.1 125 EAVVLATgkkrigGPWIGlKVhlQGI-ELkhDLEMYAAKDGYVGLCKIDH 173
                 67999996666666998865522222.22445677777777776666655 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.8e-05      0.12       3      39 ..       4      40 ..       2      47 .. 0.94
   2 ?   -1.5   0.0      0.38   7.6e+02     127     164 ..      96     133 ..      65     144 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.8e-05
                 EEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH CS
  HI0933_like  3 viviGgGaAGlmaAisaakrgkrVlllekakklgrKi 39
                 + +iGgG AGl   i +++ +  V+++e+++ +++K+
   CCG91949.1  4 ITIIGGGLAGLALGIGLRRYKIPVAVYERNDYPLKKV 40
                 78**********************************8 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.38
                  E-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 127 rletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                  rl+te +++  +++g++  kt+ + +l  +++vlAtG 
   CCG91949.1  96 RLDTEFAQLFVDHGGSLYTKTQCDPTLCQEAVVLATGK 133
                  45556666666677777777766677777778888875 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.7e-05      0.19       4      31 ..       6      33 ..       4      36 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.7e-05
                   EE--SHHHHHHHHHHHHTTT-EEEEESS CS
  FAD_binding_2  4 ViGsGlAGLaAAleaaeaGlkvavveke 31
                   +iG+GlAGLa ++ +++    vav e  
     CCG91949.1  6 IIGGGLAGLALGIGLRRYKIPVAVYERN 33
                   9****************99999998875 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00053       1.1       2      40 ..       4      41 ..       3      55 .. 0.81
   2 ?    0.8   0.0       0.1     2e+02     132     166 ..     115     149 ..      97     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00053
                EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SS CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLithkldtiaelsC 40
                +++iGgG+AG++  + + r  ++v+ + ++ d  ++ +C
  CCG91949.1  4 ITIIGGGLAGLALGIGLRRYKIPVAVY-ERNDYPLKKVC 41
                89***********************99.55555555555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.1
                 EETTS-EEEECEEEE--TT-BT-EEEETTEEEESS CS
        GIDA 132 vtedgetikakavviatGtflkgkihigekelsaG 166
                 +t+ + t+ ++avv+atG    g ++ig k + +G
  CCG91949.1 115 KTQCDPTLCQEAVVLATGKKRIGGPWIGLKVHLQG 149
                 56667788899*******98888889988876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2146.53
//
Query:       CCG91950.1  [L=351]
Description: Naringenin-chalcone synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-12   47.0   0.0    2.8e-12   46.5   0.0    1.1  1  FAE1_CUT1_RppA   FAE1/Type III polyketide synthase-like prote
    1.1e-06   28.7   0.0    1.6e-05   25.0   0.0    2.4  2  ACP_syn_III_C    3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    1.2e-06   28.6   0.0    2.3e-06   27.7   0.0    1.5  1  Chal_sti_synt_C  Chalcone and stilbene synthases, C-terminal 
    0.00055   20.1   0.1     0.0023   18.0   0.0    2.0  2  EcoEI_R_C        EcoEI R protein C-terminal
      0.003   17.0   0.0     0.0055   16.1   0.0    1.5  1  Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal 


Domain annotation for each model (and alignments):
>> FAE1_CUT1_RppA  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   7.9e-16   2.8e-12      34     202 ..      32     204 ..       7     213 .. 0.83

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 7.9e-16
  FAE1_CUT1_RppA  34 ikrvkkldeesldflrkil.ersglgeetyv..PravlelpekktlaeareEaeevlf.gavdellaktkvspkdidilvvncslfsptPslsam 124
                     +  +k+l+e sld++++il   s++  + ++  P + +   ++++l++a e    vl  ++++ +l +++++++++d l v + +    P ls+ 
      CCG91950.1  32 SIAAKTLKEASLDLVKRILlGDSWIERRYFAvdPIESVFEMSAEALNKAFEKLAPVLAaKSLKAVLDQSGLKATELDALFVCTCTGYLCPGLSSH 126
                     3346899999*******97257888777555224333334445788888888888775268****************999988888889****** PP

  FAE1_CUT1_RppA 125 vvnryklredvksynLsgmGCsAglisidlaknllqvhkntlalvvstEnitlnwYvGnersmllanclFRvGgaavl 202
                     + ++ ++r+d   +++ g GC A+l  +  +k +l+ +++ +a  ++ E  ++ +Yv ++   l++ c+F  G  + l
      CCG91950.1 127 IAEKVGMRSDSFLIDIVGHGCGAALPMLYSVKGFLKENPDCYAAAIAIELSSTAFYVDDDPGCLVSLCIFADGVNTTL 204
                     **********************************************************************99877766 PP

>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.16   5.8e+02      24      47 ..     124     147 ..      97     162 .. 0.63
   2 !   25.0   0.0   4.4e-09   1.6e-05       7      86 ..     267     345 ..     263     349 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.16
                    HHHHHHHHT--GGGB--THHHH-B CS
  ACP_syn_III_C  24 idavakklglpeekvvvnldeyGn 47 
                      ++a+k+g++ + +++++  +G 
     CCG91950.1 124 SSHIAEKVGMRSDSFLIDIVGHGC 147
                    456899999999999888876665 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 4.4e-09
                    -GGG-SEEEE-SSSHHHHHHHHHHH...T--GGGB--THHHH-B-GGGHHHHHHHHHHHTTSS-TT-EEEEEEEETTTEEEEE CS
  ACP_syn_III_C   7 tpedidalvphqanlriidavakkl...glpeekvvvnldeyGntsaasiplaLdeaveegklkpgdlvllvgfGaGltwgaa 86 
                    ++ d+++l+ h   ++++ +++k l   +++  +    l+ +Gn+s+ s++ a+++ +e++ +++   + l++fGaG+++ ++
     CCG91950.1 267 SQTDLKRLIAHPGGKEVLIELRKALpcgKFE--ESEAVLRAFGNMSSPSVMFAFQKGIESQPIEKE--FWLFSFGAGFSCHGC 345
                    6789*********************544444..444578**********************99987..9**********9876 PP

>> Chal_sti_synt_C  Chalcone and stilbene synthases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   6.3e-10   2.3e-06      26     111 ..     240     320 ..     210     348 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 6.3e-10
  Chal_sti_synt_C  26 ltfkllrdlPekieenieeflkklleklGieefndlfwivhPGGpaildrleaklklekekleasrkvlseyGnvssatvlyvlde 111
                      l  kl r +P +  e + e+  k +ek  ++++  l  i+hPGG+ +l +l  +  l   k+e s  vl+ +Gn+ss +v++ +++
       CCG91950.1 240 LRNKLHRTVPVLATEAVWELY-KRFEKHSQTDLKRL--IAHPGGKEVLIEL--RKALPCGKFEESEAVLRAFGNMSSPSVMFAFQK 320
                      667899999*99999998865.67999999999997..8********9655..56678899*********************8875 PP

>> EcoEI_R_C  EcoEI R protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.59   2.1e+03      46      87 ..      17      57 ..      13      71 .. 0.72
   2 !   18.0   0.0   6.5e-07    0.0023      16      84 ..     217     283 ..     206     291 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.59
   EcoEI_R_C 46 ppgitpealweayellek.kvspq.ltdlidlirkiagldeele 87
                ++g+t+++ we + +  + k          dl+ +i+ +d+ +e
  CCG91950.1 17 EHGYTQSECWEIFSQSIAaK---TlKEASLDLVKRILLGDSWIE 57
                56888888888887764433...234578899999998886555 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 6.5e-07
   EcoEI_R_C  16 dsidaLqiiwsdreltkel.lkeLeekLkepppgitpealweayellek.kvspqltdlidlirkiaglde 84 
                 ++   L+i  ++++l++e    +L++kL++  p +++ea+we y++ ek ++    tdl  li++ +g+++
  CCG91950.1 217 KDFLSLHIPKNREKLRFENaFGKLRNKLHRTVPVLATEAVWELYKRFEKhSQ----TDLKRLIAHPGGKEV 283
                 66677888888999998752689************************88555....9********999854 PP

>> Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.5e-06    0.0055      97     217 ..      83     201 ..       3     205 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.5e-06
  Chal_sti_synt_N  97 aevlklgkeaalkalkewGrPkskithlvfvsssevelPGadlklakklGlrpsvkrvmlyflGcygGatvlrlakdiaennkGarvlvvasei 190
                      +  + l++++ +++l + G  ++++  l  ++ ++   PG   ++a+k+G+r++   + +   Gc +    l   k    +n+ +    +a e+
       CCG91950.1  83 KLAPVLAAKSLKAVLDQSGLKATELDALFVCTCTGYLCPGLSSHIAEKVGMRSDSFLIDIVGHGCGAALPMLYSVKGFLKENPDCYAAAIAIEL 176
                      33455677777778889999999*********************************************************************** PP

  Chal_sti_synt_N 191 tvlgfrgPskdrlddlvGaalfGdGaa 217
                      +  +f    +d +  lv   +f dG  
       CCG91950.1 177 SSTAFY--VDDDPGCLVSLCIFADGVN 201
                      ****97..6899999*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2576.39
//
Query:       CCG91951.1  [L=57]
Description: hypothetical protein MFUM_270048 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       189  (0.0105416); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 394.68
//
Query:       CCG91952.1  [L=803]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-10   39.0  15.8     0.0097   15.9   0.8    5.6  4  Cytochrome_C7    Cytochrome c7 and related cytochrome c
    1.3e-07   31.8  20.9        1.3    9.4   0.0    7.6  7  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    1.6e-07   31.7  15.1      0.015   15.7   1.9    5.3  4  Cytochrom_c3_2   Cytochrome c3
      1e-06   28.4  13.2      0.078   12.7   0.1    6.6  6  Paired_CXXCH_1   Doubled CXXCH motif (Paired_CXXCH_1)
    8.5e-05   23.6  20.1        1.4   10.1   0.0    6.7  6  Cytochrom_C      Cytochrome c
    0.00056   18.9   8.5      0.018   14.0   0.3    3.8  3  Cytochrom_C552   Cytochrome c552
     0.0075   17.2  18.7        2.1    9.3   0.9    5.8  6  Cytochrome_C554  Cytochrome c554 and c-prime
  ------ inclusion threshold ------
      0.012   16.3  22.1         22    5.7   0.7    6.6  6  CCP_MauG         Di-haem cytochrome c peroxidase
       0.78   10.1  25.4          1    9.7   0.1    6.5  7  DUF1924          Domain of unknown function (DUF1924)
        3.4    8.1  20.8         52    4.2   2.3    5.5  5  Cytochrom_CIII   Class III cytochrome C family


Domain annotation for each model (and alignments):
>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.043        77      15      60 ..     306     317 ..     288     339 .. 0.67
   2 !   11.7   1.8   0.00011      0.19      12      57 ..     386     452 ..     361     489 .. 0.65
   3 !    8.6   0.0     0.001       1.8      12      25 ..     532     546 ..     517     572 .. 0.63
   4 !   15.9   0.8   5.4e-06    0.0097      12      57 ..     690     746 ..     683     758 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.043
  Cytochrome_C7  15 kCtdCHsklfeskakkkmaemekgkskkaevesltCgaCHdgknaf 60 
                    +C  CHs+                                  + + 
     CCG91952.1 306 NCVMCHSG----------------------------------EGKA 317
                    45555554..................................4433 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
  Cytochrome_C7  12 tgykCtdCHsklf..eskak.................kkmaemekgkskkaeveslt...........CgaCHdgk 57 
                     + +C+dCH++ +  +   +                         +++++++ + l+           C+aCH   
     CCG91952.1 386 GSVNCADCHGDNVsgNL--QeprpgttgykavkarplT-------ESIHAVHANFLAdmndkagrtvsCQACHPTH 452
                    45799999999852322..2244666555433332220.......2232223222114556666667799999765 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.001
  Cytochrome_C7  12 tgykCtdCHskl.fe 25 
                    +g +Ct+CH++l +e
     CCG91952.1 532 RGLTCTNCHNQLsHE 546
                    577899999988332 PP

  == domain 4  score: 15.9 bits;  conditional E-value: 5.4e-06
  Cytochrome_C7  12 tgykCtdCHsklfeska.kkk.maemekgkskkaeves.lt............CgaCHdgk 57 
                     + +C++CH++++     +++ ++++ + +     +++ l+            C aCH+ +
     CCG91952.1 690 GKIACQSCHESIHGLYPvRAEgEENTVDLTT----HKQaLQyspdgryagpvsCSACHTVN 746
                    4579********7433322222222222222....222222334567778888*****865 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0038       6.9      13      30 ..     306     323 ..     302     351 .. 0.75
   2 !    8.4   0.6    0.0014       2.6      13      25 ..     389     407 ..     382     444 .. 0.57
   3 !    6.6   0.1    0.0055       9.9      13      40 ..     444     471 ..     438     485 .. 0.81
   4 ?    1.6   0.0       0.2   3.6e+02      13      20 ..     535     544 ..     528     594 .. 0.54
   5 ?    3.8   0.5     0.042        75      13      24 ..     654     668 ..     651     692 .. 0.71
   6 ?    2.3   1.2      0.12   2.1e+02      11      19 ..     691     699 ..     683     728 .. 0.77
   7 !    9.4   0.0   0.00074       1.3      13      41 ..     738     768 ..     728     785 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0038
  Cytochrome_CBB3  13 nCasCHgkggagpslagr 30 
                      nC+ CH  +g++++l+++
       CCG91952.1 306 NCVMCHSGEGKAAKLSRQ 323
                      8*****867777777755 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0014
  Cytochrome_CBB3  13 nCasCHgkggag......p 25 
                      nCa CHg++  g      p
       CCG91952.1 389 NCADCHGDNVSGnlqeprP 407
                      9******444444445432 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0055
  Cytochrome_CBB3  13 nCasCHgkggagpslagrdwepdalvdi 40 
                      +C++CH ++  +p+l++ d++p ++ d+
       CCG91952.1 444 SCQACHPTHWTNPNLNNFDTNPYQIIDS 471
                      7*****99999*****999999887775 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.2
  Cytochrome_CBB3  13 nCasCHg..k 20 
                      +C  CH   +
       CCG91952.1 535 TCTNCHNqlS 544
                      7*****9332 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.042
  Cytochrome_CBB3  13 nCasCHg...kggag 24 
                      +CasCH+    + +g
       CCG91952.1 654 KCASCHAapfVESMG 668
                      7*****955533444 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.12
  Cytochrome_CBB3  11 kknCasCHg 19 
                      k +C+sCH 
       CCG91952.1 691 KIACQSCHE 699
                      569*****8 PP

  == domain 7  score: 9.4 bits;  conditional E-value: 0.00074
  Cytochrome_CBB3  13 nCasCHgkggag..pslagrdwepdalvdii 41 
                      +C++CH+ +++g   +l g++ e+d++ +++
       CCG91952.1 738 SCSACHTVNAKGvpVQLVGTEYENDYWASVV 768
                      8******888885534446665655555543 PP

>> Cytochrom_c3_2  Cytochrome c3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0       0.1   1.8e+02      24      45 ..     302     323 ..     292     348 .. 0.72
   2 !   10.8   2.4   0.00029      0.51       6      72 ..     387     456 ..     384     461 .. 0.64
   3 ?    5.5   0.0     0.013        23      57      67 ..     532     542 ..     514     558 .. 0.66
   4 !   15.7   1.9   8.4e-06     0.015       7      68 ..     653     746 ..     648     753 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.1
                     HHHHHHHHHH--HHHCHTTSST CS
  Cytochrom_c3_2  24 veeekClsCHgkleelakktke 45 
                     v+  +C+ CH+   ++ak +++
      CCG91952.1 302 VDIPNCVMCHSGEGKAAKLSRQ 323
                     5566788888877777765554 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00029
                     T.TGGGTSSSST-SSTTHHHHHH....HHHHH--HHHCHTTSST.TSSBTTSSCTSSS-GGGTS-TTTSBT CS
  Cytochrom_c3_2   6 gvkCadCHtkekpkkdkaveeek....ClsCHgkleelakktkeakeanphkshekeleCteCHkeHkkse 72 
                     +v+CadCH+++ + + ++ +  +     ++    +e++++ +++   a+++++  ++++C++CH +H ++ 
      CCG91952.1 387 SVNCADCHGDNVSGNLQEPRPGTtgykAVKARPLTESIHAVHAN-FLADMNDKAGRTVSCQACHPTHWTNP 456
                     589*****988865544333222111255555555555555553.5566666777999*********8765 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.013
                     SSS-GGGTS-T CS
  Cytochrom_c3_2  57 keleCteCHke 67 
                     + l+Ct+CH++
      CCG91952.1 532 RGLTCTNCHNQ 542
                     44556666654 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 8.4e-06
                     .TGGGTSSSST-SSTT..HHHHHH.................HHHHH--HHHCHTTSST..............TSSBTTSSCTSSS-GGGTS-TT CS
  Cytochrom_c3_2   7 vkCadCHtkekpkkdk..aveeek.................ClsCHgkleelakktkea.............keanphkshekeleCteCHkeH 68 
                      kCa+CH+   +++        ++                 C+sCH++ + l   ++e               +++p+ ++++ ++C++CH+  
      CCG91952.1 653 PKCASCHAAPFVESMGgkYFPVDQprkyslyrfskahgkiaCQSCHESIHGLYPVRAEGeentvdltthkqaLQYSPDGRYAGPVSCSACHTVN 746
                     58999999777654432244444478999999999999999*******9977665444345678888877767777888888*********865 PP

>> Paired_CXXCH_1  Doubled CXXCH motif (Paired_CXXCH_1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.057     1e+02       3      19 ..     301     317 ..     300     328 .. 0.73
   2 ?    3.1   0.0     0.044        80       8      38 ..     389     395 ..     381     413 .. 0.72
   3 ?    4.5   0.3     0.016        29       8      18 ..     444     454 ..     425     466 .. 0.79
   4 ?    4.5   0.1     0.016        28       8      15 ..     535     542 ..     526     549 .. 0.74
   5 !   12.7   0.1   4.4e-05     0.078       6      39 ..     652     700 ..     649     703 .. 0.80
   6 ?    3.7   0.0     0.029        53       8      21 ..     738     751 ..     733     761 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.057
  Paired_CXXCH_1   3 PvaegeClsCHnphgsd 19 
                     Pv   +C  CH+  g +
      CCG91952.1 301 PVDIPNCVMCHSGEGKA 317
                     66666899999988764 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.044
  Paired_CXXCH_1   8 eClsCHnphgsdnpkllkkakgaalCysCHd 38 
                     +C +CH                         
      CCG91952.1 389 NCADCH------------------------G 395
                     466776........................3 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.016
  Paired_CXXCH_1   8 eClsCHnphgs 18 
                     +C +CH +h +
      CCG91952.1 444 SCQACHPTHWT 454
                     59999988865 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.016
  Paired_CXXCH_1   8 eClsCHnp 15 
                      C++CHn 
      CCG91952.1 535 TCTNCHNQ 542
                     47888874 PP

  == domain 5  score: 12.7 bits;  conditional E-value: 4.4e-05
  Paired_CXXCH_1   6 egeClsCH............nphgsdnpkll...kkakgaalCysCHde 39 
                     e +C sCH             p   + +  l    ka g+  C+sCH++
      CCG91952.1 652 EPKCASCHaapfvesmggkyFPVDQPRKYSLyrfSKAHGKIACQSCHES 700
                     557*****9999988888776666666666689989***********97 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.029
  Paired_CXXCH_1   8 eClsCHnphgsdnp 21 
                     +C++CH   +   p
      CCG91952.1 738 SCSACHTVNAKGVP 751
                     49999977665555 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0008       1.4      10      45 ..     300     357 ..     290     383 .. 0.71
   2 ?    3.2   4.7      0.11     2e+02      11      29 ..     389     418 ..     384     487 .. 0.73
   3 ?    4.5   0.0     0.045        80      11      65 ..     535     587 ..     529     599 .. 0.76
   4 ?    1.1   0.0      0.49   8.8e+02      11      17 ..     654     660 ..     648     677 .. 0.87
   5 ?   -1.9   1.0       4.2   7.5e+03      11      17 ..     693     700 ..     685     734 .. 0.77
   6 !    9.5   0.0    0.0012       2.1      11      41 ..     738     764 ..     731     802 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0008
                  T.....TGGGTB-SSSBSSS.....................--HHHHHHHTTT-HHHH CS
  Cytochrom_C  10 a.....nCaaCHgvegggakqgg.................gptlsgaaerasaasiga 45 
                  +     nC+ CH+ eg++ak                    +p+ s+ ++r sa+si+ 
   CCG91952.1 300 NpvdipNCVMCHSGEGKAAKLSRqagfvlfekeyeywkknYPDESDYMARLSASSINL 357
                  4555559***********9866666677776666666666666666666666666655 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.11
                  TGGGTB-SSSBSSS...............- CS
  Cytochrom_C  11 nCaaCHgvegggakqgg...........gp 29 
                  nCa CHg +  g+ q +           ++
   CCG91952.1 389 NCADCHGDNVSGNLQEPrpgttgykavkAR 418
                  8***********999865555554444433 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.045
                  TGGGTB.-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHH CS
  Cytochrom_C  11 nCaaCH.gvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkl 65 
                   C++CH ++  +  k   + +l++  ++++++  ++s+++  +v a +d++  +++
   CCG91952.1 535 TCTNCHnQLSHELYK---YDDLDNGVSQEGKTLRNKSIDEIIKVLADGDTRRFADM 587
                  7*****666666655...58999999999999999999988888777777766665 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.49
                  TGGGTB- CS
  Cytochrom_C  11 nCaaCHg 17 
                  +Ca+CH 
   CCG91952.1 654 KCASCHA 660
                  7*****6 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 4.2
                  TGGGTB.- CS
  Cytochrom_C  11 nCaaCH.g 17 
                   C +CH +
   CCG91952.1 693 ACQSCHeS 700
                  6*****44 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.0012
                  TGGGTB-SSSBSSS....--HHHHHHHTTT- CS
  Cytochrom_C  11 nCaaCHgvegggakqgggptlsgaaerasaa 41 
                   C aCH+v+++g++ +    l g + +++++
   CCG91952.1 738 SCSACHTVNAKGVPVQ----LVGTEYENDYW 764
                  5***********9954....54444444444 PP

>> Cytochrom_C552  Cytochrome c552
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.3   9.9e-06     0.018     125     178 ..     350     452 ..     298     465 .. 0.61
   2 ?    3.7   0.0     0.014        24     126     140 ..     534     548 ..     504     585 .. 0.65
   3 ?    2.0   2.2     0.042        76      89     135 ..     654     701 ..     637     746 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.9e-06
                     -.....................................S-HHHHB-TT.THH...........B----HHHHHHHHHTT---CTTS-HHHHHHHH CS
  Cytochrom_C552 125 s.....................................vgCadCHdpk.dme...........Lritrptlkralealgvdevkkatrqekrtlv 170
                                                           v CadCH ++ + +             ++   l++ ++a+ ++  ++ + +  rt+ 
      CCG91952.1 350 LsassinllelhdkmfktnflkdynpnassnrlgsvgsVNCADCHGDNvSGNlqeprpgttgyKAVKARPLTESIHAVHANFLADMNDKAGRTVS 444
                     04444555555555555566666666666678999999*******8884555555556655533344445666666666677778889999**** PP

                     HCTTSS-- CS
  Cytochrom_C552 171 CaqCHveY 178
                     C  CH + 
      CCG91952.1 445 CQACHPTH 452
                     *****765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.014
                     S-HHHHB-TTTHHB- CS
  Cytochrom_C552 126 vgCadCHdpkdmeLr 140
                     ++C++CH++ + eL 
      CCG91952.1 534 LTCTNCHNQLSHELY 548
                     677777777776663 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.042
                     GGGTTT-THHHHHHHHHHHHHHCS....SBCCCCT.TT--S-S-HHHHB-TT CS
  Cytochrom_C552  89 aCltCkspdvprlieekgeedyfs....tkyaevg.keivnsvgCadCHdpk 135
                      C +C++      +e++g  +yf      ky+ ++ ++ + +++C  CH++ 
      CCG91952.1 654 KCASCHAAP---FVESMGG-KYFPvdqpRKYSLYRfSKAHGKIACQSCHESI 701
                     566666543...4577777.67752222355555412333559999999764 PP

>> Cytochrome_C554  Cytochrome c554 and c-prime
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.25   4.4e+02      48      58 ..     304     314 ..     289     349 .. 0.72
   2 ?    2.1   0.4      0.21   3.8e+02      75      84 .]     386     395 ..     367     395 .. 0.80
   3 !    6.8   2.9     0.007        13       2      66 ..     390     460 ..     389     470 .. 0.55
   4 ?    2.6   0.0      0.15   2.7e+02      74      83 ..     531     540 ..     516     568 .. 0.75
   5 ?    4.2   3.1     0.045        80      48      83 ..     652     698 ..     638     699 .. 0.75
   6 !    9.3   0.9    0.0011       2.1       1      60 [.     693     748 ..     693     762 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.25
                      -TTTGGGSBST CS
  Cytochrome_C554  48 apeClkCHatg 58 
                       p+C+ CH   
       CCG91952.1 304 IPNCVMCHSGE 314
                      57777777633 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.21
                      BSS-HHHHH- CS
  Cytochrome_C554  75 agVqCesCHg 84 
                        V+C  CHg
       CCG91952.1 386 GSVNCADCHG 395
                      5799*****8 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.007
                      HHHHTHHHH...........HHHTTSTGGGTTGGGSTTSSHHHHHHTT--TTS--TT-TTTGGGSBSTTTSTT--- CS
  Cytochrome_C554   2 CaeCHeeqy...........eswkkskhakaleslkkekkaeakkkakldpakdaeeapeClkCHatgagkdkgfv 66 
                      Ca+CH +++           + +k+ k   a    +++++ +a+  a  d++ +a ++  C +CH t + +++   
       CCG91952.1 390 CADCHGDNVsgnlqeprpgtTGYKAVK---ARPLTESIHAVHANFLA--DMNDKAGRTVSCQACHPTHWTNPNLNN 460
                      999998755333332222224444333...22233333333333333..4446677899********999988644 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.15
                      GBSS-HHHHH CS
  Cytochrome_C554  74 lagVqCesCH 83 
                      l+g +C +CH
       CCG91952.1 531 LRGLTCTNCH 540
                      5555666665 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.045
                      -TTTGGGSBSTT...........TSTT---SSS--GGGBSS-HHHHH CS
  Cytochrome_C554  48 apeClkCHatga...........gkdkgfvlkektkllagVqCesCH 83 
                      +p+C +CHa+ +           +++ +++l   +k+   + C+sCH
       CCG91952.1 652 EPKCASCHAAPFvesmggkyfpvDQPRKYSLYRFSKAHGKIACQSCH 698
                      799*****98875444444444447777788888888889******9 PP

  == domain 6  score: 9.3 bits;  conditional E-value: 0.0011
                      HHHHHTHHHHHHHTTSTGGGTTGGGSTTSSHHHHHHTT--TTS--TT-TTTGGGSBSTTT CS
  Cytochrome_C554   1 aCaeCHeeqyeswkkskhakaleslkkekkaeakkkakldpakdaeeapeClkCHatgag 60 
                      aC++CHe++   +   +  +    +   + ++ k++ +++p+ ++     C +CH+ +a+
       CCG91952.1 693 ACQSCHESIHGLYPVRAEGEENT-V---DLTTHKQALQYSPDGRYAGPVSCSACHTVNAK 748
                      7************7654333322.2...22334566778899999999*******98875 PP

>> CCP_MauG  Di-haem cytochrome c peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.5   2.8e+03      23      36 ..     306     318 ..     299     370 .. 0.63
   2 ?    5.1   4.1     0.019        34      14      82 ..     380     451 ..     378     511 .. 0.61
   3 ?    5.5   0.0     0.014        26      13      44 ..     525     557 ..     524     617 .. 0.69
   4 ?    1.3   0.0      0.28     5e+02      23      30 ..     654     661 ..     649     679 .. 0.78
   5 ?    5.7   0.7     0.012        22      19      34 ..     689     704 ..     683     735 .. 0.71
   6 ?    2.4   0.3      0.13   2.3e+02      21      34 ..     736     749 ..     733     763 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.5
                 -HHHHSGCCCTTS- CS
    CCP_MauG  23 sCasCHdpaagftd 36 
                 +C  CH+ + g + 
  CCG91952.1 306 NCVMCHSGE-GKAA 318
                 588888632.2222 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.019
                 GGGSTTSS--HHHHS..GCCCTTS-SSSSBBEGGGEBSSS----STTGGGSS..SBSTTEEBSSHHHHHHHHH CS
    CCP_MauG  14 krLSgngkisCasCH..dpaagftdglkvslgvegrlgarnaptllnaafnk..glfwdgraesleeqalgPl 82 
                 +rL++ g+++Ca CH  +++   +++++  +g  + + ar     + a +++  + + d   ++++ qa +P 
  CCG91952.1 380 NRLGSVGSVNCADCHgdNVSGNLQEPRPGTTGY-KAVKARPLTESIHAVHANflADMNDKAGRTVSCQACHPT 451
                 588999999999999433333334444455554.244444333333333311123333444446666666665 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.014
                 -GGGSTTSS--HHHHSGC.CCTTS-SSSSBBEG CS
    CCP_MauG  13 dkrLSgngkisCasCHdp.aagftdglkvslgv 44 
                 d+ +S+ +   C +CH++ ++   + +++  gv
  CCG91952.1 525 DQPISELRGLTCTNCHNQlSHELYKYDDLDNGV 557
                 7889999*********64244444434455555 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.28
                 -HHHHSGC CS
    CCP_MauG  23 sCasCHdp 30 
                 +CasCH  
  CCG91952.1 654 KCASCHAA 661
                 7*****64 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.012
                 TSS--HHHHSGCCCTT CS
    CCP_MauG  19 ngkisCasCHdpaagf 34 
                  gki+C+sCH+  +g 
  CCG91952.1 689 HGKIACQSCHESIHGL 704
                 689*******876665 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.13
                 S--HHHHSGCCCTT CS
    CCP_MauG  21 kisCasCHdpaagf 34 
                  +sC+ CH+++a++
  CCG91952.1 736 PVSCSACHTVNAKG 749
                 58******987665 PP

>> DUF1924  Domain of unknown function (DUF1924)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.9   5.2e+03      27      37 ..     305     315 ..     295     324 .. 0.75
   2 ?    4.0   0.1     0.035        63      26      39 ..     387     400 ..     376     411 .. 0.81
   3 ?    9.7   0.1   0.00058         1      12      41 ..     428     457 ..     419     478 .. 0.83
   4 ?   -0.8   0.1       1.1     2e+03      25      35 ..     532     542 ..     523     549 .. 0.77
   5 ?    2.9   0.3     0.078   1.4e+02      25      37 ..     651     663 ..     638     671 .. 0.80
   6 ?    2.0   0.9      0.15   2.6e+02      21      34 ..     686     699 ..     672     703 .. 0.75
   7 ?    4.5   0.5     0.025        45      23      37 ..     733     747 ..     712     753 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.9
                 SSTHHHH-SST CS
     DUF1924  27 lsCasCHgedp 37 
                  +C  CH+ + 
  CCG91952.1 305 PNCVMCHSGEG 315
                 48*****8764 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.035
                 -SSTHHHH-SSTTS CS
     DUF1924  26 elsCasCHgedptk 39 
                 +++Ca CHg++++ 
  CCG91952.1 387 SVNCADCHGDNVSG 400
                 689*******9875 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00058
                 HHHHH---SSS-TT-SSTHHHH-SSTTS-E CS
     DUF1924  12 ealfkkkvktkkgkelsCasCHgedptkeg 41 
                 +a f + ++ k g+++sC++CH ++ t++ 
  CCG91952.1 428 HANFLADMNDKAGRTVSCQACHPTHWTNPN 457
                 678899999*************99988765 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.1
                 T-SSTHHHH-S CS
     DUF1924  25 kelsCasCHge 35 
                 + l+C+ CH +
  CCG91952.1 532 RGLTCTNCHNQ 542
                 5578*****86 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.078
                 T-SSTHHHH-SST CS
     DUF1924  25 kelsCasCHgedp 37 
                 +e +CasCH++  
  CCG91952.1 651 AEPKCASCHAAPF 663
                 5779*****9865 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.15
                 SS-TT-SSTHHHH- CS
     DUF1924  21 tkkgkelsCasCHg 34 
                 +k + +++C+sCH 
  CCG91952.1 686 SKAHGKIACQSCHE 699
                 4555679******6 PP

  == domain 7  score: 4.5 bits;  conditional E-value: 0.025
                 -TT-SSTHHHH-SST CS
     DUF1924  23 kgkelsCasCHgedp 37 
                  +  +sC++CH+ ++
  CCG91952.1 733 YAGPVSCSACHTVNA 747
                 55678*******986 PP

>> Cytochrom_CIII  Class III cytochrome C family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.25   4.4e+02      77      89 ..     305     317 ..     276     326 .. 0.69
   2 ?    4.2   2.3     0.029        52      33      87 ..     389     453 ..     381     464 .. 0.50
   3 ?    3.6   0.5     0.046        83      21      41 ..     433     452 ..     412     480 .. 0.65
   4 ?    2.3   0.0      0.12   2.1e+02      78      88 ..     535     545 ..     521     563 .. 0.74
   5 ?    3.0   6.6     0.072   1.3e+02      34      87 ..     655     747 ..     648     754 .. 0.59

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.25
                     TCHHHHHHHHHHT CS
  Cytochrom_CIII  77 ksCvgCHkkkkke 89 
                      +Cv CH+ + k+
      CCG91952.1 305 PNCVMCHSGEGKA 317
                     4566666655443 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.029
                     THHHTSTT..CTTSCSTS-CTCTS-SSSTTTSTTCHHHHHHCSSTT............TCHHHHHHHHH CS
  Cytochrom_CIII  33 eCeeCHhk..eeekeeiekcstcHaeekekkekkslekavHkkkaa............ksCvgCHkkkk 87 
                     +C++CH      + +e ++ +t  +  k  +  ++  +avH+   +             sC+ CH ++ 
      CCG91952.1 389 NCADCHGDnvSGNLQEPRPGTTGYKAVK-ARPLTESIHAVHA---NfladmndkagrtVSCQACHPTHW 453
                     7888887743222333333333333332.2222222333333...112233444555688888887765 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.046
                     EEEEHHHHTTSHTHHHTSTTC CS
  Cytochrom_CIII  21 vefnHkaHaevkeCeeCHhke 41 
                     + +n ka ++v +C++CH ++
      CCG91952.1 433 ADMNDKAGRTV-SCQACHPTH 452
                     44555555555.677776553 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.12
                     CHHHHHHHHHH CS
  Cytochrom_CIII  78 sCvgCHkkkkk 88 
                     +C++CH++  +
      CCG91952.1 535 TCTNCHNQLSH 545
                     56666666554 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.072
                     HHHTSTT.......................CTTSCSTS-CTCTS-SSS......TTTSTTCHHHHHHCSSTT..........TCHHHHHHHHH CS
  Cytochrom_CIII  34 CeeCHhk.......................eeekeeiekcstcHaeek......ekkekkslekavHkkkaa..........ksCvgCHkkkk 87 
                     C++CH +                        ++ +   +c++cH++ +      +++e+++++ + Hk+  +           sC  CH+ ++
      CCG91952.1 655 CASCHAApfvesmggkyfpvdqprkyslyrFSKAHGKIACQSCHESIHglypvrAEGEENTVDLTTHKQALQyspdgryagpVSCSACHTVNA 747
                     555555555555555555555555444444222333335666776666666666666666666666765554666667777789999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 5308.43
//
Query:       CCG91953.1  [L=163]
Description: putative Starvation-inducible outer membrane lipoprotein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-26   92.1   0.0    2.7e-26   91.8   0.0    1.1  1  Slp       Outer membrane lipoprotein Slp family
  ------ inclusion threshold ------
      0.027   14.5   0.0       0.16   12.0   0.0    2.1  2  OB_Dis3   Dis3-like cold-shock domain 2 (CSD2)


Domain annotation for each model (and alignments):
>> Slp  Outer membrane lipoprotein Slp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0     3e-30   2.7e-26       4     129 ..      23     144 ..      20     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 3e-30
         Slp   4 Cas.vPeeirgesatelslsevkaapeaykgkevrlGGkivkvenkkdktrleivslpLdssgrPelsdeseGRflarvegFlDPaiykkgrlvTvvGt 101
                  as +P+eir+e+++++s++ + ++pe++k++ v lGG+i++ +  +d+t+l i +++L ssgrP+ s++++ Rf + +++FlDP+iy++gr++Tv+G+
  CCG91953.1  23 SASpIPKEIRKEAKNQPSFELLLKNPESFKNHLVLLGGVIIENTPLEDRTELLIEHRKLGSSGRPKYSTKNKKRFSVVTKDFLDPEIYAQGRFITVYGK 121
                 44559********************************************************************************************** PP

         Slp 102 lkgsetgkigeadytypvvevkgvklWp 129
                 + + ++gk      +  +v +k ++lWp
  CCG91953.1 122 VGSLQKGKE-----KQLLVYAKFIYLWP 144
                 *99999873.....23456666666665 PP

>> OB_Dis3  Dis3-like cold-shock domain 2 (CSD2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.13   1.2e+03      23      38 ..      42      57 ..      22      59 .. 0.78
   2 ?   12.0   0.0   1.7e-05      0.16      16      67 ..      76     127 ..      71     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.13
                TTHHHHTTTTTT--EE CS
     OB_Dis3 23 eeflenpeelegklfv 38
                e +l+npe ++++l++
  CCG91953.1 42 ELLLKNPESFKNHLVL 57
                6678999999999886 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.7e-05
                 EETTSSTTTHHHHTTTTTT--EEEEE----TT-SS-EEEEEEE-HHHHHHHH CS
     OB_Dis3  16 iptkelpeeflenpeelegklfvvkidsWsetsryPlGeivksLGeagdiea 67 
                 i+ ++l +  + +  + ++k+f+v  ++  + + y++G+++ + G++g+++ 
  CCG91953.1  76 IEHRKLGSSGRPKYSTKNKKRFSVVTKDFLDPEIYAQGRFITVYGKVGSLQK 127
                 55666655666667788899****************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1108.07
//
Query:       CCG91954.1  [L=33]
Description: hypothetical protein MFUM_270051 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 237.53
//
Query:       CCG91955.1  [L=73]
Description: hypothetical protein MFUM_270052 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 576.09
//
Query:       CCG91956.1  [L=47]
Description: hypothetical protein MFUM_270053 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-07   31.0   0.4    2.4e-07   30.9   0.4    1.0  1  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
  ------ inclusion threshold ------
      0.023   14.4   0.3      0.023   14.4   0.3    1.0  1  AAA_15    AAA ATPase domain


Domain annotation for each model (and alignments):
>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.4   2.7e-11   2.4e-07     241     281 ..       1      42 [.       1      46 [. 0.93

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.7e-11
      AAA_21 241 tkrllalltallralkkg.sllliDEpEngLHPkllrrllel 281
                 ++ +la+l+++l  ++ g  l++i+EpEn+LHP l++ l+e+
  CCG91956.1   1 MLICLAFLALILTPNELGaCLFCIEEPENFLHPYLIEGLVEV 42 
                 67899************999******************9986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.3   2.6e-06     0.023     324     346 ..      19      41 ..       1      45 [. 0.71

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.6e-06
      AAA_15 324 nvilliEEPEahLHpqaqkvlik 346
                   +++iEEPE+ LHp + + l++
  CCG91956.1  19 ACLFCIEEPENFLHPYLIEGLVE 41 
                 5689***********88777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 357.82
//
Query:       CCG91957.1  [L=83]
Description: hypothetical protein MFUM_270054 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 647.57
//
Query:       CCG91958.1  [L=76]
Description: hypothetical protein MFUM_270055 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   13.6   0.0      0.027   13.4   0.0    1.0  1  DUF5098   Domain of unknown function (DUF5098)


Domain annotation for each model (and alignments):
>> DUF5098  Domain of unknown function (DUF5098)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.5e-06     0.027     365     397 ..      21      54 ..      10      61 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-06
     DUF5098 365 piklk.dklvkLdkekreiiitekksntlksiFv 397
                 +++++ + l++L++ek+e+i++ kk+ tl+s+ +
  CCG91958.1  21 SVEVReEYLYRLEGEKKELIFKVKKQGTLESFII 54 
                 5665415699*********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 553.53
//
Query:       CCG91959.1  [L=83]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   13.0   0.0       0.14   12.6   0.0    1.1  1  STAT_int  STAT protein, protein interaction domain


Domain annotation for each model (and alignments):
>> STAT_int  STAT protein, protein interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.7e-06      0.14      44      97 ..      29      78 ..      16      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.7e-06
    STAT_int 44 eiapdnpedeslatalleelleeleekasrlseeenflqklklreiaknlqkky 97
                 ++   + de++at+++++l e +++++++ +++ + ++k k   ++k++q+ y
  CCG91959.1 29 IAD---VPDEQTATVIVSSLTETMKKRLEDGEQKTDAIEKPKKGGTTKSFQQ-Y 78
                333...569*****************************************87.6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 577.26
//
Query:       CCG91960.1  [L=49]
Description: hypothetical protein MFUM_270058 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 377.82
//
Query:       CCG91961.1  [L=468]
Description: Outer membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-42  145.7  36.5    1.4e-26   93.5  15.7    2.1  2  OEP       Outer membrane efflux protein
  ------ inclusion threshold ------
      0.046   13.7   0.2       0.16   12.0   0.2    1.9  1  DUF2322   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4  12.8   8.9e-20   7.9e-16       1     188 []      63     254 ..      63     254 .. 0.96
   2 !   93.5  15.7   1.6e-30   1.4e-26       1     188 []     279     462 ..     279     462 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 8.9e-20
         OEP   1 ldellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgtt.....svgltlsqplfdggkrrarvkaakaqlea 94 
                 l+e++++al+ np++ +a+++ie++e  + + ka+ +P  +l +  ++e+++   + ++  t           +++ q++++  +  +  +++k  +e+
  CCG91961.1  63 LEEVIQRALDANPEVVSARKAIEQQEGIKMQFKAKLYPHGGLVYRAQREQSSLLMFLPTIETYPLtrtswLGAVQIKQTILN-VESVKLARQQKELVEK 160
                 79***********************77777777778****************9999888887777*****************.9*************** PP

         OEP  95 aeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                 a +q  +++++++++v++a++  l  +e + ++ee+ ++++ +++ + ++ykaG+  +   l+aq++++ a+ +la+a++q+ +ar qL+++l+
  CCG91961.1 161 AIWQAMDVALKTTAQVKEAFYLTLFRQEVVGIREELTEASKAIADYTMKMYKAGEFPQYQALSAQAEYSTAQGDLAQARYQYVKAREQLRMILN 254
                 **********************************************************99******************************9986 PP

  == domain 2  score: 93.5 bits;  conditional E-value: 1.6e-30
         OEP   1 ldellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaql 99 
                 +de+l++al+++ dl+aa + + aa+a+++aa+a+++P+l++ ++y + +n +  + +++g +   +g++ ++++fd  +++ ++ka+ka  ++a+ + 
  CCG91961.1 279 YDEALKIALQKRTDLNAALHGLYAAHAAVAAAQASYYPNLDALLQYENISNVYILY-PKWGWT---AGVQGQWNFFDIMENNGKIKAQKALEDIAQVKV 373
                 59**********************************************99997544.444444...********************************* PP

         OEP 100 eqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                  q + ++ +e++++y+ql+ +ke+++++e+a++ aek + +a+++++ G+++ +  + a++ ll+a++ +aea++ +++a+a+Ley++g
  CCG91961.1 374 TQLKVDIPAELRELYQQLKRSKESFAFQENAVNDAEKGFYQARRLFESGETNWVQAVLARQALLKAKIGYAEAKYIYNAALARLEYAVG 462
                 *****************************************************999999999************************987 PP

>> DUF2322  Uncharacterized protein conserved in bacteria (DUF2322)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   1.8e-05      0.16      53      91 ..     291     327 ..     280     334 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
     DUF2322  53 ldakaAeeglelfaehtadakanpgkHPNidrLlaviee 91 
                  d +aA +gl  +a h+a a a++   PN+d Ll+  + 
  CCG91961.1 291 TDLNAALHGL--YAAHAAVAAAQASYYPNLDALLQYENI 327
                 5678888886..9*********************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3029.79
//
Query:       CCG91962.1  [L=441]
Description: putative Glycine/d-amino acid oxidases (Deaminating) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-47  161.9   0.0    3.5e-47  161.7   0.0    1.0  1  DAO             FAD dependent oxidoreductase
    3.3e-07   29.8   0.0     0.0046   16.2   0.0    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    5.3e-07   28.7   0.5      0.021   13.5   0.1    2.2  2  HI0933_like     HI0933-like protein
    1.8e-06   27.4   0.6     0.0018   17.6   0.1    2.2  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    3.3e-06   27.5   0.9      0.013   16.0   0.1    2.5  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    1.8e-05   24.2   0.0     0.0021   17.3   0.0    2.2  2  FAD_binding_3   FAD binding domain
    0.00014   21.1   0.3    0.00063   18.9   0.2    1.8  2  FAD_binding_2   FAD binding domain
    0.00017   21.0   0.0     0.0077   15.6   0.0    2.1  2  Amino_oxidase   Flavin containing amine oxidoreductase
    0.00071   19.8   0.5     0.0031   17.7   0.2    2.2  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0036   17.3   0.4        1.5    8.8   0.0    2.2  2  NAD_binding_9   FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.011   15.0   0.1      0.019   14.2   0.1    1.3  1  Thi4            Thi4 family
       0.18   11.3   0.0       0.34   10.4   0.0    1.4  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.0   2.3e-50   3.5e-47       1     351 [.      43     397 ..      43     398 .. 0.85

  Alignments for each domain:
  == domain 1  score: 161.7 bits;  conditional E-value: 2.3e-50
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS..........STHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl..........rylpeaselarlslealeelreleeelgididyrrtGll 87 
                 dv+iiG+G++Gl++   L ++g  V ++e++ ++g gaS rn+g++ sg+          + + +a el+  sl a++ ++e  ++++id+++  +G+l
  CCG91962.1  43 DVAIIGSGYTGLWASIILKEKGlnVHVFEAK-ELGYGASTRNAGFVGSGYklgvsklfkiYGKDKAVELYNISLKARKDIEETIRKENIDCGFVVPGHL 140
                 8*****************9999*********.******************7777777765444445599999999999997777777************ PP

                 EEESSHHHHHHHHHHHHHH.HHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEE CS
         DAO  88 slaadeeelealdkllall.leagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgvert 185
                 + a++++ l++l++ ++ll + + l+++lld++ + +    ++ ++g+lf  d++ ++pa++ ++++  a ++Gv+++++tev+ +e+++gk  +v  t
  CCG91962.1 141 VAAWKPRHLANLERTAELLeKYFSLKTRLLDKASLSACME-TDLYHGGLFLADGALLNPAHYYQGVLTLAINKGVNFHLQTEVQQIEQKRGK-FEV--T 235
                 ****9999****999999853345588*****87777775.44567*******9999*****************************988777.667..3 PP

                 CTEEE.EEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE.EEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCS CS
         DAO 186 tpgen.daadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpe.tdddgrgvyvtprkdgrvlvGgtadeesgdddpevd 281
                  +g + + a  v +a++ +++  +   +e++++i p+ ++++ ++p+++ l+++ +i +     d+ ++ +y++   dg++l+Gg    + ++++ +++
  CCG91962.1 236 LSGKKrTLASEVLIATNGYTSsSF---PEIQRRIIPLPSTIVLTEPIDQHLLER-LIHTKSAvYDTKNFLYYFRFLDDGKLLFGGRT--HLSFGS-SIT 327
                 33655232356********99777...99999***************9966555.5555444688999999999999******9985..899999.777 PP

                 HHHHHHHHHHHHHHSGGGCGEE..EEEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHH CS
         DAO 282 eedidellealrklfPqlgdvl..rkwaGlrp.lpdglpligetpgvkglylatGhsghGltlapatGkllae 351
                  e++ ell+++  +fP+l++++    w G  + + d lp  g+   ++g++++ G++ghG+ la   Gkl+a+
  CCG91962.1 328 -EAAKELLRSIYMVFPALKEIKirNVWEGKVCfTLDQLPHYGRL--TNGIHYCLGYCGHGVALASYLGKLTAY 397
                 .78999***********97755426****999668********5..68***********************97 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.1e-06    0.0046     143     174 ..      42      73 ..      24     132 .. 0.69
   2 !   11.5   0.0   8.4e-05      0.13     194     240 ..     210     257 ..     200     265 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.1e-06
                  SEEEEES-SHHHHHHHHHHHHHT-EEEEEESS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgkevtlvear 174
                   +++++G+Gy+G+  ++ l++ g +v++ ea 
   CCG91962.1  42 IDVAIIGSGYTGLWASIILKEKGLNVHVFEAK 73 
                  45556666666666666666656555555553 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 8.4e-05
                  HHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S.-EEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  Pyr_redox_2 194 ekeGvevklgtsvkeidgngeklevvledgeeidadlvvvav.Gvrps 240
                   ++Gv+++l+t+v++i+++  k ev+l+ +++  a+ v++a+ G++ s
   CCG91962.1 210 INKGVNFHLQTEVQQIEQKRGKFEVTLSGKKRTLASEVLIATnGYTSS 257
                  578**************9999999888888887777777666477665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   1.4e-05     0.021       2      32 ..      43      73 ..      42      79 .. 0.94
   2 !   13.4   0.0   1.6e-05     0.024     121     165 ..     211     254 ..     203     262 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 dv++iG G  Gl a+i ++++g +V ++e++
   CCG91962.1 43 DVAIIGSGYTGLWASIILKEKGLNVHVFEAK 73
                 89***************************87 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.6e-05
                  HHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 121 eagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGl 165
                  ++gv+++l+tev+++e+++++ f+v+++++++  a+++++At G 
   CCG91962.1 211 NKGVNFHLQTEVQQIEQKRGK-FEVTLSGKKRTLASEVLIATNGY 254
                  689************887766.*****999999999999999875 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1   0.00099       1.5       2      33 ..      46      76 ..      45      82 .. 0.92
   2 !   17.6   0.1   1.2e-06    0.0018      84     143 ..     199     262 ..     196     267 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00099
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkgnig 33
                 IiG G  Gl a i lk++gl ++ + E +++g
   CCG91962.1 46 IIGSGYTGLWASIILKEKGL-NVHVFEAKELG 76
                 9*******************.799***99876 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.2e-06
  Pyr_redox_3  84 leYlrevak...sfelpiklfeeVesvkkedegfevetske.tyeAkkviiAtGefdkPnklni 143
                  ++Y++ v +   ++ ++ +l++eV+++++++++fev+ s +    A++v+iAt  +    +++i
   CCG91962.1 199 AHYYQGVLTlaiNKGVNFHLQTEVQQIEQKRGKFEVTLSGKkRTLASEVLIATNGYTSSSFPEI 262
                  567777755333789**********************98764889********99988877776 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   8.7e-06     0.013       2      31 ..      44      73 ..      43      77 .. 0.94
   2 !    9.5   0.1   0.00094       1.4      51      78 ..     210     236 ..     202     241 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.7e-06
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                v+++G+Gy+gl +  +l+e g +V+v+e++
  CCG91962.1 44 VAIIGSGYTGLWASIILKEKGLNVHVFEAK 73
                89*************************987 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00094
                 HHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  51 ekngievllntkveeiegsedgvesvkl 78 
                  ++g++++l+t+v++ie++  ++e v+l
  CCG91962.1 210 INKGVNFHLQTEVQQIEQKRGKFE-VTL 236
                 578**************8887755.776 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.4e-06    0.0021       2      33 ..      42      73 ..      41      86 .. 0.90
   2 ?    4.6   0.0      0.01        16     116     171 ..     210     261 ..     197     281 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.4e-06
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekr 33
                   +dV+I+G+G +Gl ++ +L+e+G +v++ e  
     CCG91962.1 42 IDVAIIGSGYTGLWASIILKEKGLNVHVFEAK 73
                   69*************************99876 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.01
                    HHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHH CS
  FAD_binding_3 116 eerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrkt 171
                     ++g++++ +tev+ +eq   + + ++    +g+++t+ ++ l++  G+ S +  +
     CCG91962.1 210 INKGVNFHLQTEVQQIEQKRGKFEVTL----SGKKRTLASEVLIATNGYTSSSFPE 261
                    5789999999**998888777755555....56679*************9987655 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   4.2e-07   0.00063       1      36 [.      43      78 ..      43      88 .. 0.87
   2 ?   -0.4   0.0       0.3   4.5e+02     153     204 ..     211     256 ..     190     276 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.2e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36
                   Dv +iGsG  GL A++ ++e+Gl+v v e ++   g
     CCG91962.1 43 DVAIIGSGYTGLWASIILKEKGLNVHVFEAKELGYG 78
                   9****************************9886545 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.3
                    TCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 153 kagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgr 204
                    + gv f+ +te++++ ++ g+     v   + +++ r  a  v++at G+  
     CCG91962.1 211 NKGVNFHLQTEVQQIEQKRGKFE---V---TLSGKKRTLASEVLIATNGYTS 256
                    44577888888888866555443...2...2446667789999999999986 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.023        35       2      24 ..      52      74 ..      51      75 .. 0.93
   2 !   15.6   0.0   5.2e-06    0.0077     181     267 ..     167     261 ..     139     335 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.023
                   HHHHHHHHHHHTTEEEEEEESSS CS
  Amino_oxidase  2 aGLaaArqLlsaGfdVtvlEard 24
                   +GL a   L+++G++V v+Ea++
     CCG91962.1 52 TGLWASIILKEKGLNVHVFEAKE 74
                   79*******************85 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 5.2e-06
                    TTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHH.....TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-HHHHH...S CS
  Amino_oxidase 181 selsaklalpllwelegfggslllprgGlsqlpealae.....elrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvplgvlk...a 267
                      l+ k++l + +e+  ++g+l+l++g l +++++ +        +g++++l t+V +i++ +++  vtl+  + + a  V++++  ++ +    
     CCG91962.1 167 TRLLDKASLSACMETDLYHGGLFLADGALLNPAHYYQGvltlaINKGVNFHLQTEVQQIEQKRGKFEVTLSGKKRTLASEVLIATNGYTSSsfpE 261
                    5777888888888888999999998666555544444455554488************************999999************9995552 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   2.1e-06    0.0031       1      54 [.      46     100 ..      46     112 .. 0.76
   2 ?   -1.6   0.0       2.1   3.2e+03      11      37 ..     155     181 ..     155     206 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.1e-06
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE..TTCEECTS---EEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev..pgvrvdygahifhg 54 
                    I+G+G +Gl a   L+++g++v+++e+   lG  a++++    g  +++g++ +++
     CCG91962.1  46 IIGSGYTGLWASIILKEKGLNVHVFEAK-ELGYGASTRNAgfVGSGYKLGVSKLFK 100
                    9*************************96.787555555553345677777666655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.1
                    HHHHHHCC.TEEEEEE-SSSSSSGGG-E CS
  NAD_binding_8  11 aAylLaka.gfdvlllekrdrlGGraas 37 
                    +A lL k+  ++  ll+k+ +l+ ++ +
     CCG91962.1 155 TAELLEKYfSLKTRLLDKA-SLSACMET 181
                    6889999989999999997.55555555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1     0.005       7.4       1      40 [.      45      79 ..      45      85 .. 0.81
   2 !    8.8   0.0     0.001       1.5     104     153 ..     206     251 ..     199     253 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.005
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagr 40
                   ai+G G +Gl +   L ++      l++++f+ +e+g g 
     CCG91962.1 45 AIIGSGYTGLWASIILKEK-----GLNVHVFEAKELGYGA 79
                   8********9887766555.....7*********999665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.001
  NAD_binding_9 104 feellarlpegvtvevh.raevvdleeradgqavlladgaslaadaVvLAl 153
                    ++ ++++      v++h ++ev ++e+++++++v+l++++++ a +V +A+
     CCG91962.1 206 LTLAINK-----GVNFHlQTEVQQIEQKRGKFEVTLSGKKRTLASEVLIAT 251
                    4444433.....35565499****************************998 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.3e-05     0.019      17      54 ..      41      78 ..      33      89 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS.SS-- CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailers.vspG 54
                + Dv+i+G+G +GL a+ +l +k +l+v ++e++ + +G
  CCG91962.1 41 QIDVAIIGSGYTGLWASIILKEK-GLNVHVFEAKeLGYG 78
                57****************99999.********8625555 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00023      0.34       3      28 ..      44      69 ..      42      74 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00023
                    EEEE--STTHHHHHHHHHHCTSEEEE CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevig 28
                    +++iG+GY Gl  +++l e+g +v +
      CCG91962.1 44 VAIIGSGYTGLWASIILKEKGLNVHV 69
                    89*******************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3062.92
//
Query:       CCG91963.1  [L=43]
Description: hypothetical protein MFUM_270061 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       165  (0.00920297); expected 358.6 (0.02)
Passed bias filter:                      152  (0.00847788); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 334.39
//
Query:       CCG91964.1  [L=59]
Description: hypothetical protein MFUM_270062 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.30s 00:00:00.74 Elapsed: 00:00:00.47
# Mc/sec: 375.74
//
Query:       CCG91965.1  [L=348]
Description: hypothetical protein MFUM_270063 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-17   63.8   0.0    2.2e-17   63.2   0.0    1.3  1  Lipase_3       Lipase (class 3)
     0.0063   16.1   0.0      0.011   15.3   0.0    1.4  1  PE-PPE         PE-PPE domain
  ------ inclusion threshold ------
      0.054   14.1   0.0      0.073   13.7   0.0    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
       0.16   12.0   0.0       0.26   11.4   0.0    1.3  1  Thioesterase   Thioesterase domain


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   4.9e-21   2.2e-17       2     140 ..      63     217 ..      62     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 4.9e-21
                 EEE----.------------EEE-HHHH-G............TT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT-.EEEEEEEETHHHHHHHHHHHHH CS
    Lipase_3   2 vafRGte.sakdwltdldfslteakellek............eggkvhsgfleayeeslreqvlkelkrllekype.ysivvtGHSLGgalAlLaaldl 86 
                 +++RGt  s  ++l+dl   l + + +l+              + +vh gf   +   l    +  +++l+++ p+   i++tGHS G+a+A+L+  +l
  CCG91965.1  63 IVIRGTIlSFGSILEDLLSFLIKSDAQLNYkhqciaykfaphPQASVHAGFAIGALLLLLHPEKGLVNQLKRNVPSgSPIYITGHSQGAAVATLIRSYL 161
                 7889998888888888888888888776667788889999999********9999978888888888889999996589******************** PP

                 HHTT-SS---EEEEEES----B-HHHHHHHHT-TTE..EEEEEEETT--GGG-S-S CS
    Lipase_3  87 vengenekkkvtvvtfGqPrvgnkefaklvdsqlnk..kvlrvvntnDivPrlppl 140
                   +  n +++ + ++f+qP+ gn  +a  +d+ +++    +r++n+ D vP+lp+ 
  CCG91965.1 162 HYQPTNPSHNYKSYVFAQPKPGNDFYAYDFDHLFSNkgLAFRITNSLDWVPQLPFT 217
                 *******************************999988889**************86 PP

>> PE-PPE  PE-PPE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.4e-06     0.011      37      99 ..     129     190 ..     114     234 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.4e-06
      PE-PPE  37 eaairaelaagekvvvfGySqgalvasnekarlaalsepaa.pdqlsfvlvgnpnrpnggllar 99 
                  + ++++   g+++ + G Sqga+va+   ++l +  +p++ + + +  ++++p+  n + +  
  CCG91965.1 129 VNQLKRNVPSGSPIYITGHSQGAAVATLIRSYLHY--QPTNpSHNYKSYVFAQPKPGNDFYAYD 190
                 4556666779***********************88..888845566667778886554444433 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.6e-05     0.073      62      95 ..     130     180 ..      78     252 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.6e-05
                    .........TTSEEEEEETCHHHHHHHHHHCC............EE.EEES- CS
  Abhydrolase_6  62 a.......gggpvvlvGHSlGGalalaaapla..........lvvg.vlldp 95 
                    +       +g p+++ GHS+G+a+a++ ++++             + v+  p
     CCG91965.1 130 NqlkrnvpSGSPIYITGHSQGAAVATLIRSYLhyqptnpshnY-KSyVFAQP 180
                    1344477789999*************96665555566655431.22355555 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.8e-05      0.26      55      80 ..     128     154 ..     126     168 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.8e-05
                   HHHHHHHH-SSS.SEEEEEETHHHHHH CS
  Thioesterase  55 yaealrqiqpeg.PyalfGhSlGgllA 80 
                   ++++l++  p g P ++ GhS G+++A
    CCG91965.1 128 LVNQLKRNVPSGsPIYITGHSQGAAVA 154
                   5799**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2524.43
//
Query:       CCG91966.1  [L=239]
Description: hypothetical protein MFUM_270064 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-10   41.4   0.0    3.7e-10   40.1   0.0    1.7  1  TonB_C    Gram-negative bacterial TonB protein C-terminal
     0.0026   18.0   0.0     0.0049   17.1   0.0    1.6  1  TonB_2    TonB C terminal


Domain annotation for each model (and alignments):
>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   4.2e-14   3.7e-10       3      62 ..     158     217 ..     156     226 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 4.2e-14
                 ----HHHHHHTEEEEEEEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT.-EE-TT-- CS
      TonB_C   3 peYPeeArrrgieGtvtveftidpdGnvtnvkvvkssgseiLdkaAleavrk.wkfkpapk 62 
                 p YP  Ar ++++G+v++++t++ +G+v + ++vkssg+ +Ld+ A   v+  w+f+ ++k
  CCG91966.1 158 PPYPLLARLNHMQGKVVLRITVH-NGKVISSTIVKSSGYTLLDQTAKYWVEThWQFPEGIK 217
                 89********************8.8*******************************98876 PP

>> TonB_2  TonB C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   5.4e-07    0.0049      27      82 ..     172     225 ..     155     228 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.4e-07
      TonB_2  27 eavveitidpdGeivsvrlvksSgneafDkavkrAiekasplPpppekggapteik 82 
                 ++v +it++ +G+++s  +vksSg + +D+++k  +e   ++P+   k+   +ei 
  CCG91966.1 172 KVVLRITVH-NGKVISSTIVKSSGYTLLDQTAKYWVETHWQFPEG-IKKVFLEEII 225
                 345555553.9**99**********************99999975.3555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1755.39
//
Query:       CCG91967.1  [L=171]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-08   32.3   0.2    1.1e-07   31.4   0.2    1.4  1  Cupin_2       Cupin domain
      6e-05   22.7   0.3    9.6e-05   22.0   0.3    1.2  1  Cupin_1       Cupin
    0.00023   20.8   0.0    0.00048   19.8   0.0    1.4  1  Cupin_3       Protein of unknown function (DUF861)
     0.0008   19.2   0.2     0.0012   18.6   0.2    1.3  1  Cupin_6       Cupin
     0.0032   17.4   0.0     0.0062   16.4   0.0    1.5  1  AraC_binding  AraC-like ligand binding domain


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.2   3.1e-11   1.1e-07      13      59 ..      62     111 ..      53     119 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 3.1e-11
                 EECSSSEEEEEEEEESEEEEEEC...TEEEEEETTEEEEE-TT-EEEEEE CS
     Cupin_2  13 shrHpgedeffyVleGegeltvd...geeveleaGdsvyfpagtpHrfrN 59 
                  h H+ + e++ V++G+++++++   g+ +el+ Gd+v++pag+ H+ + 
  CCG91967.1  62 DHFHSTTHEVLAVVSGQAKVRLGgprGKGIELSVGDVVVIPAGVAHARIW 111
                 699******************99577779*****************8665 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.3   2.7e-08   9.6e-05      49      98 ..      63     108 ..      56     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.7e-08
                 EEESSS-EEEEEEESEEEEEEEETTSS.EEEEEE.EETTEEEEE-TT-EEE CS
     Cupin_1  49 hyhpnateiayvlqGegrvgfvvpgngnrdfhkk.lreGdvfvvPaglvhf 98 
                 h+h+ ++e++ v+ G++ v +  p       +   l+ Gdv+v+Pag++h+
  CCG91967.1  63 HFHSTTHEVLAVVSGQAKVRLGGPRG-----KGIeLSVGDVVVIPAGVAHA 108
                 9*****************88777775.....4446***************7 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.3e-07   0.00048      23      60 ..      66     105 ..      61     117 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.3e-07
                 ESSEEEEEEEECEEEEEETTTEE...EEEETTEEEEE-TTE CS
     Cupin_3  23 yeedEfcyileGevkvtpegget...velraGDlvvlpkgl 60 
                  +++E   +++G+ kv+  gg +   +el+ GD+vv+p+g 
  CCG91967.1  66 STTHEVLAVVSGQAKVRL-GGPRgkgIELSVGDVVVIPAGV 105
                 6779999**********9.6666666*************97 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2   3.4e-07    0.0012      33      72 ..      64     108 ..      36     115 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.4e-07
     Cupin_6  33 g....lalhvvlrGscwli.dpasgepvrLsagdvvllpggephv 72 
                       ++++v++G++ ++  +++g+ ++Ls gdvv++p g +h+
  CCG91967.1  64 FhsttHEVLAVVSGQAKVRlGGPRGKGIELSVGDVVVIPAGVAHA 108
                 133358899**********55556699***************995 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.7e-06    0.0062      18      59 ..      62     107 ..      51     113 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.7e-06
                   EETT-.SEEEEEEEEE-EEEEETTEE...EEE-TT-EEEE-TTS-E CS
  AraC_binding  18 phvhd.eyvihyvteGtgrlrlngrt...ydlgpGdlfLlppgepH 59 
                    h h+ ++++  v++G++++rl+g +    +l+ Gd++ +p g+ H
    CCG91967.1  62 DHFHStTHEVLAVVSGQAKVRLGGPRgkgIELSVGDVVVIPAGVAH 107
                   699**9********************9*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1255.04
//
Query:       CCG91968.1  [L=989]
Description: hypothetical protein MFUM_270066 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-20   71.1   0.0    8.2e-13   48.3   0.0    2.4  2  FtsK_SpoIIIE   FtsK/SpoIIIE family
    1.9e-09   37.9   1.2    2.5e-07   31.0   0.0    3.3  3  DUF87          Helicase HerA, central domain
      6e-08   32.8   0.0      0.066   13.1   0.0    3.7  3  NACHT          NACHT domain
    1.1e-05   25.5   0.5    3.3e-05   24.0   0.1    2.0  1  FtsK_alpha     FtsK alpha domain
    1.5e-05   25.3   0.0      0.044   14.1   0.0    3.1  3  AAA_22         AAA domain
    6.3e-05   23.4   0.0        1.3    9.4   0.0    3.7  3  AAA_16         AAA ATPase domain
    0.00035   20.1   0.3      0.013   15.0   0.0    2.9  3  Pox_A32        Poxvirus A32 protein
     0.0011   18.0   0.0     0.0031   16.5   0.0    1.7  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
     0.0031   17.5   0.4        3.2    7.8   0.1    3.3  2  AAA_14         AAA domain
  ------ inclusion threshold ------
      0.013   15.6   0.0        1.7    8.6   0.0    2.8  2  ResIII         Type III restriction enzyme, res subunit
      0.016   15.6   0.0       0.61   10.5   0.0    2.8  2  RNA_helicase   RNA helicase
       0.03   14.0   0.1      0.084   12.6   0.0    1.8  2  AAA_24         AAA domain
       0.04   13.0   0.0      0.085   11.9   0.0    1.5  1  T2SSE          Type II/IV secretion system protein
      0.057   12.9   0.0       0.58    9.6   0.0    2.1  2  AAA_7          P-loop containing dynein motor region
      0.074   13.2   0.3        8.7    6.5   0.2    3.6  3  AAA_33         AAA domain
      0.089   11.4   0.0       0.14   10.7   0.0    1.2  1  DUF853         Bacterial protein of unknown function (DUF853)
        8.7    6.8   8.7         18    5.7   1.2    3.5  3  Nnf1           Nnf1


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   7.8e-16   8.2e-13      30     158 ..     752     875 ..     732     876 .. 0.76
   2 !   22.6   0.0   5.3e-08   5.6e-05     192     241 ..     864     913 ..     857     915 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 7.8e-16
                   EEEEEGGGS-..........SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSSCGGGTT-TTBSS.S-B-SHHHHHHHHHHHHHHHH CS
  FtsK_SpoIIIE  30 plvldlkkma.........shllvaGatgsGKStalntLilSlatthtPeeVqliliDykgvelsalediphllsvavatdperalraleeLvkeme 117
                    + l+++++          +hllvaG+tgsGKS +l++Li ++++ + P++ + +liD+kg+ +  le i          + ++a  +l++ v+em+
    CCG91968.1 752 TIDLEQSEWVigdfmdsnfAHLLVAGTTGSGKSQFLKSLIGAILY-KFPKKARVFLIDFKGTDFFPLESIK---------SHKEAEDFLKKAVEEMN 838
                   44444455546666666678********************99998.99************99999987765.........45668899********* PP

                   HHHHHHHHTT-SSHHH.HHHHHHHHHHTT---B-TT-..... CS
  FtsK_SpoIIIE 118 eryalfreagvrsiaa.ydgeiaedpldifgdvflvlDnydd 158
                   +r + ++++  +++++ y+ + ++ p        +v+D+y+d
    CCG91968.1 839 SRNERLNKEMLNDLNSlYKTGKGDIPYW-----IIVIDEYAD 875
                   *******999999999544444443333.....467777765 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 5.3e-08
                   -EEEEEEC-HHHHHHHHHHH....HHHHHHHHHHHCGGGTEEEEEEES-- CS
  FtsK_SpoIIIE 192 pslvvivderieLrlaapkdssvlvedaivRlarkgraaglHlllatqrl 241
                   p+ + ++de ++++   +++ ++  e++i+R+a+kgr+ag+Hl++ tq++
    CCG91968.1 864 PYWIIVIDEYADMISGLRGNRRREFESYIQRIAQKGRSAGIHLIISTQSP 913
                   677889*******999999999*************************987 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.074        78      32      48 ..      56      72 ..      55     157 .. 0.94
   2 ?   -0.8   0.5       1.2   1.3e+03     113     150 ..     401     440 ..     328     479 .. 0.58
   3 !   31.0   0.0   2.4e-10   2.5e-07      25     127 ..     772     898 ..     766     936 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.074
       DUF87 32 TGsGKSntvavLleell 48
                +G+GK+++++ L++el 
  CCG91968.1 56 AGYGKTYLIGRLFQELK 72
                7**************98 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.2
       DUF87 113 aaav.qrsvleealdqaka.keekeklssdepveklleel 150
                 +++v  r++l++a ++ ++ +e +e   +de +ek+++e 
  CCG91968.1 401 QSKVgIRKFLQWAEREFEQiEETNELREGDEELEKIFNEE 440
                 2222244444444444444555555555555555555555 PP

  == domain 3  score: 31.0 bits;  conditional E-value: 2.4e-10
       DUF87  25 HlAilgsTGsGKSntvavLleelle..kkgatililDpHG.EYgkal........ekllsekvkvitpspsa.............kdkelkinpwsldp 99 
                 Hl++ g+TGsGKS + ++L+  +l    k+a++ ++D  G +++++         e+ l++ v+ ++ +++              k  +  i++w + +
  CCG91968.1 772 HLLVAGTTGSGKSQFLKSLIGAILYkfPKKARVFLIDFKGtDFFPLEsikshkeaEDFLKKAVEEMNSRNERlnkemlndlnslyKTGKGDIPYWIIVI 870
                 *********************9999888999******************998887666666666666666558899999999999999*********** PP

       DUF87 100 eelldlleeddkpaaavqrsvleealdq 127
                 +e++d++ +   + + + +s+++++ ++
  CCG91968.1 871 DEYADMISGLRGNRRREFESYIQRIAQK 898
                 *******995555555566666666554 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.022        23       8      27 ..      55      74 ..      49      89 .. 0.87
   2 !   10.2   0.0   0.00051      0.54      73     162 ..     283     376 ..     265     380 .. 0.90
   3 !   13.1   0.0   6.3e-05     0.066       3     138 ..     773     925 ..     771     940 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.022
                -TTTCHHHHHHHHHHHHCTS CS
       NACHT  8 eaGsGKTtLlqklalawaeg 27
                eaG GKT+L+ +l ++++ +
  CCG91968.1 55 EAGYGKTYLIGRLFQELKGK 74
                79*************99865 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00051
                 HHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE..........EEEE--TCCHHHHHHHHC CS
       NACHT  73 wavllelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeqleea........ivlevegfsesrrkqlvrky 162
                 + +l++ ++  ++ +D  ++  +d +    q+   ++++l+++  +++  ++lt+   a+++ + ++++a        + le+eg++ +++++l+++ 
  CCG91968.1 283 FCNLASFARPFVFCFDQTERYGEDKSL--CQKFGSVIGSLVNE--CKNHLIILTTNFHAWEQNRNYIQKAdleriayeKQLELEGLNIEQARELIEQR 376
                 567888999999*********999988..899999********..*****************999999999999999999************999875 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 6.3e-05
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC.....-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE...........E CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqga.....fklvFflslrelsrsgnarsladllfsqlpepaapvsevwavllelperlL...........l 85 
                 +++ G  GsGK+ +l++l+ a+  + +++ +     fk   f++l +++ +++a    d+l +   e +++ ++  +++l   ++l            +
  CCG91968.1 773 LLVAGTTGSGKSQFLKSLIGAILYKFPKKARvflidFKGTDFFPLESIKSHKEA---EDFLKKAVEEMNSRNERLNKEMLNDLNSLYktgkgdipywiI 868
                 6899*****************998888887674444555559999999999866...9*************99977888877777779999999***99 PP

                 EEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHH....HCTT CS
       NACHT  86 ilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrd....leeq 138
                 ++D + ++ + l+ +++++ +  ++++ +k    + +l++++++ + +     ++++
  CCG91968.1 869 VIDEYADMISGLRGNRRREFESYIQRIAQKGRSAGIHLIISTQSPRKEIvsglIKQC 925
                 9**998888888878999999999999999888888888887776665544444444 PP

>> FtsK_alpha  FtsK alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   3.1e-08   3.3e-05      19      80 ..     645     706 ..     632     723 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 3.1e-08
  FtsK_alpha  19 eeelekkaklieetleefgieakvveisvGPvvtqyevepapgvkvskiaaleddlalaLaa 80 
                 ++  +   ++++e +++ +i+a+v ++++ P  +++ ve +  v++++i+a+++d++l+L+ 
  CCG91968.1 645 NDPYRIYREKLNEFFSKNNIDANVRDYKIAPQFVRFLVEKDVRVRITNIVARKKDIQLHLGL 706
                 4445556789999*********************************************9975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0046       4.8      13      71 ..      55     111 ..      53     142 .. 0.75
   2 ?   -3.0   0.1       7.8   8.2e+03      48      70 ..     401     423 ..     364     449 .. 0.59
   3 !   14.1   0.0   4.1e-05     0.044       7     127 ..     772     908 ..     767     917 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0046
      AAA_22  13 esGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdllrellralglelka...e 71 
                 e+G GKT+l+ rl+++l+        +++++++++  ++   + +++ ++l +l+++ +     
  CCG91968.1  55 EAGYGKTYLIGRLFQELKG-------KATLIYFYAFIDSsrFWINIFDRILTELTQPEEFidiD 111
                 78***************74.......77777555444443589999999999999887776652 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.8
      AAA_22  48 psstsskdllrellralglelka 70 
                 +s+ + +++l++  r++++  ++
  CCG91968.1 401 QSKVGIRKFLQWAEREFEQIEET 423
                 44445666666666666654444 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 4.1e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevv.........fvtlpsstsskdllrellralglelkaerlsseellealeqalrarav...ie 93 
                 +l+v G +G+GK+  l+ l      +++++++r+ ++         +  ++s ++ +d+l++ ++++++++++    ++e+l+ l+   ++ +      
  CCG91968.1 772 HLLVAGTTGSGKSQFLKSLIGAI-LYKFPKKARVFLIdfkgtdffpLESIKSHKEAEDFLKKAVEEMNSRNER---LNKEMLNDLNSLYKTGKGdipYW 866
                 799*****************998.4667776555555333333112222333336777777777777765555...55556666665555555599999 PP

      AAA_22  94 lliiDEaqhlr...s....eealeeLrsllnl.srkgvqliL 127
                 +++iDE   ++   +     e  +++ +++   ++ g++li+
  CCG91968.1 867 IIVIDEYADMIsglRgnrrREFESYIQRIAQKgRSAGIHLII 908
                 ******999775661445577777777776656666666665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0017       1.8      32     103 ..      55     119 ..      46     308 .. 0.74
   2 ?   -1.3   0.1       2.4   2.6e+03      53     127 ..     328     398 ..     315     442 .. 0.63
   3 !    9.4   0.0    0.0012       1.3      25     126 ..     771     851 ..     751     907 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0017
      AAA_16  32 esGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawreklee 103
                 e+G GK+ l+ +l+++l+++ + +++  +         s  ++++++  ++l++l +++e  + ++   +  +
  CCG91968.1  55 EAGYGKTYLIGRLFQELKGK-ATLIYFYAFID-----SSRfWINIFD--RILTELTQPEEFIDIDRRNNRSYT 119
                 68*****************9.33333333333.....1243888883..588888777555444444444444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.4
      AAA_16  53 giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllellkrll 127
                  i l+++++  e+++ y   +q ++ e++  +   e+e  + e++re +e++++   +++ ++ + lle+l +++
  CCG91968.1 328 LIILTTNFHAWEQNRNY---IQKADLERIAYEKQLELEGLNIEQARELIEQRIK-RYPIEESKVRKLLEKLPSFF 398
                 44455555555555444...5666555566666666667778888888888777.22223333344444444444 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0012
      AAA_16  25 elvllsGesGvGKsslvrellralekd.....ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasr 118
                   +l+ G  G+GKs  +++l  a+  +     +++++  k +++    p+  + +  ++e++l++  +e +s++                       +r
  CCG91968.1 771 AHLLVAGTTGSGKSQFLKSLIGAILYKfpkkaRVFLIDFKGTDF---FPLESIKSHKEAEDFLKKAVEEMNSRN-----------------------ER 843
                 679**************999999999966543344466666666...555444444444444444444433322.......................33 PP

      AAA_16 119 llellkrl 126
                 l+ ++ + 
  CCG91968.1 844 LNKEMLND 851
                 33333333 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.24   2.5e+02      22      71 ..      56     105 ..      48     118 .. 0.85
   2 !   15.0   0.0   1.2e-05     0.013      15      47 ..     772     807 ..     759     844 .. 0.83
   3 ?   -0.9   0.0      0.87   9.1e+02      97     134 ..     937     975 ..     925     984 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.24
     Pox_A32  22 sGsGktvyLlsLlrtlvkkykhifLltpvknseYdkyvwPdhinkvtsee 71 
                 +G Gkt  +  L+++l  k   i+    + +s +   ++   ++++t+ e
  CCG91968.1  56 AGYGKTYLIGRLFQELKGKATLIYFYAFIDSSRFWINIFDRILTELTQPE 105
                 799*********************99999999988888776666666655 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.2e-05
     Pox_A32  15 rlalvGgsGsGktvyLlsLlrtlvkky..k.hifLl 47 
                 +l + G +GsGk  +L+sL+  + +k+  k  +fL+
  CCG91968.1 772 HLLVAGTTGSGKSQFLKSLIGAILYKFpkKaRVFLI 807
                 4566799********************842235654 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.87
     Pox_A32  97 aerfLlilDDlGdkqtksk.tLlellnvgRhlnvsiilL 134
                 +++ LlilD  G  q++ k  Ll  + +gR l+   +++
  CCG91968.1 937 DTESLLILDRGGAEQLRGKgDLLCNFQHGRFLRAQSAFI 975
                 5678************98734666778999998766665 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     3e-06    0.0031      15      54 ..     770     812 ..     766     818 .. 0.83
   2 ?   -2.9   0.0       2.2   2.4e+03     261     282 ..     892     913 ..     890     915 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3e-06
  TrwB_AAD_bind  15 tqhilivGttGsGKtqalekllrairarg...draivlDltGa 54 
                     +h+l++GttGsGK+q l++l+ ai  +     r+  +D++G+
     CCG91968.1 770 FAHLLVAGTTGSGKSQFLKSLIGAILYKFpkkARVFLIDFKGT 812
                    58**********************9875333388888999885 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.2
  TrwB_AAD_bind 261 lksllaegRkfGgavvlglqsi 282
                    +++++++gR+ G+ +++  qs 
     CCG91968.1 892 IQRIAQKGRSAGIHLIISTQSP 913
                    68899*************9986 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.012        13      13      56 ..      58     101 ..      57     121 .. 0.68
   2 !    7.8   0.1     0.003       3.2       5      90 ..     773     899 ..     769     928 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.012
      AAA_14  13 vGKTtllkqlikellvkkesilyi.nldderdkkladpeklleli 56 
                  GKT+l+ +l++el   k   +y+ ++ d +   ++ ++++l+++
  CCG91968.1  58 YGKTYLIGRLFQELK-GKATLIYFyAFIDSSRFWINIFDRILTEL 101
                 6************99.55555554378888887777775333333 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.003
      AAA_14   5 lvitGaRrvGKTtllkqlikell...vkkesilyinldderd......................kkladpekllelileklke................ 62 
                 l++ G   +GK+ +lk li   l    kk +++ i+++  ++                                       ++                
  CCG91968.1 773 LLVAGTTGSGKSQFLKSLIGAILykfPKKARVFLIDFKGTDFfplesikshkeaedflkkaveeM----------------NSrnerlnkemlndlnsl 855
                 68999999**********99888998889999999999999977766544433333332222210................112222222222222233 PP

      AAA_14  63 .......ekkty..lflDEiqev.........pewekalkslvdeg 90 
                            y  +++DE   +         +e+e++++++ ++g
  CCG91968.1 856 yktgkgdIP--YwiIVIDEYADMisglrgnrrREFESYIQRIAQKG 899
                 334433211..12366666666666666666666666666666655 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.056        59      25      56 ..      47      79 ..      26     125 .. 0.75
   2 ?    8.6   0.0    0.0016       1.7      22      64 ..     768     810 ..     726     874 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.056
                SEEEEEES.TTSTHHHHHHHHHHHH-S.....- CS
      ResIII 25 krglikma.TGtGKTlvaaklierllkkgkeek 56
                k +li  +  G GKT+++ +l ++l+ k+    
  CCG91968.1 47 KAYLISSPeAGYGKTYLIGRLFQELKGKATLIY 79
                5666655438***************99876544 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0016
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSH CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprk 64 
                  +  ++l++ +TG+GK+  + +li ++l k++++  +fl++ k
  CCG91968.1 768 SNFAHLLVAGTTGSGKSQFLKSLIGAILYKFPKKARVFLIDFK 810
                 77889***************************99999998865 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0       0.3   3.2e+02       6      28 ..      54      77 ..      49     111 .. 0.76
   2 ?   10.5   0.0   0.00057      0.61       2      36 ..     774     806 ..     773     829 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.3
  RNA_helicase  6 ps.geGKStlakeLakallkklkl 28
                  p+ g GK++l+ +L ++l +k  l
    CCG91968.1 54 PEaGYGKTYLIGRLFQELKGKATL 77
                  4459*************9977633 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00057
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvys 36 
                   ++ G +g GKS++ k+L+ a+l k+  +kk +v+ 
    CCG91968.1 774 LVAGTTGSGKSQFLKSLIGAILYKF--PKKARVFL 806
                   689*******************766..77777765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         7   7.4e+03      11      22 ..      56      67 ..      55      78 .. 0.73
   2 ?   12.6   0.0   7.9e-05     0.084       4      83 ..     772     882 ..     769     903 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7
      AAA_24 11 sgiGKTtlakel 22
                +g GKT+l+ +l
  CCG91968.1 56 AGYGKTYLIGRL 67
                799****98776 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 7.9e-05
      AAA_24   4 kiliyGpsgiGKTtlakel..........gpkplfidtekGlksldadkfpdie...swedfldevvel......................aaeladyk 67 
                  +l+ G  g+GK+ ++k+l          + ++++id+  G+   d+  +++i+     edfl+++ve                        + + +y 
  CCG91968.1 772 HLLVAGTTGSGKSQFLKSLigailykfpkKARVFLIDFK-GT---DFFPLESIKshkEAEDFLKKAVEEmnsrnerlnkemlndlnslyktGKGDIPYW 866
                 6899***********************766666666664.45...555555555444889999999888999999999999999999998766666799 PP

      AAA_24  68 tlviDtideleelcla 83 
                 ++viD + ++ +  + 
  CCG91968.1 867 IIVIDEYADMISGLRG 882
                 9999999888776665 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.1e-05     0.085     130     153 ..     771     794 ..     742     808 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.1e-05
       T2SSE 130 glilvsGgTgsGKttllyallkei 153
                   +lv+G+TgsGK+ +l +l+  i
  CCG91968.1 771 AHLLVAGTTGSGKSQFLKSLIGAI 794
                 569**************8887765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.38     4e+02      41      69 ..      55      83 ..      47      97 .. 0.82
   2 ?    9.6   0.0   0.00055      0.58      16      55 ..     752     792 ..     748     810 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.38
       AAA_7 41 ptGtGKtviikdllkkldkekylsltinf 69
                ++G GKt +i +l+++l+ + +l+ +  f
  CCG91968.1 55 EAGYGKTYLIGRLFQELKGKATLIYFYAF 83
                689**************977766665555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00055
       AAA_7  16 tvdtvrysyllelllknkk.pvllvGptGtGKtviikdllk 55 
                 t+d  + ++++  +++++  ++l+ G+tG+GK+  +k+l+ 
  CCG91968.1 752 TIDLEQSEWVIGDFMDSNFaHLLVAGTTGSGKSQFLKSLIG 792
                 8899999999999988775277788*********9999764 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.25   2.7e+02       9      25 ..      57      81 ..      55     141 .. 0.77
   2 ?   -1.3   0.0       2.1   2.2e+03      70     116 ..     325     378 ..     316     392 .. 0.81
   3 ?    6.5   0.2    0.0083       8.7       3      25 ..     774     793 ..     773     915 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.25
      AAA_33  9 GsGKstlaerllkklg........a 25
                G GK++l+ rl ++l+        +
  CCG91968.1 57 GYGKTYLIGRLFQELKgkatliyfY 81
                99************99774444444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.1
      AAA_33  70 grnvildatnlsrrer.......arflklarrlgvpvrivvvetdeetlkeRla 116
                 ++++i+  tn+ ++e+       a++ ++a +   + + + +e  +e++++R++
  CCG91968.1 325 KNHLIILTTNFHAWEQnrnyiqkADLERIAYEKQLELEGLNIEQARELIEQRIK 378
                 578899999999988877888877888888888888888888888888888876 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0083
      AAA_33   3 llvGlpGsGKstlaerllkklga 25 
                 l+ G  GsGKs+++++l+   ga
  CCG91968.1 774 LVAGTTGSGKSQFLKSLI---GA 793
                 688************998...44 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014      0.14      22      87 ..     771     843 ..     753     860 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
      DUF853  22 rhGliaGatGtGktvtLqvlaeslse...aGvpvfladvkGd....LsgiakaGevkdklaarleeiglddyq 87 
                  h l+aG tG Gk   L+ l  ++         vfl d kG     L +i    e++d l++ +ee++ ++ +
  CCG91968.1 771 AHLLVAGTTGSGKSQFLKSLIGAILYkfpKKARVFLIDFKGTdffpLESIKSHKEAEDFLKKAVEEMNSRNER 843
                 699***************998876431224679********44555899999999*********999977655 PP

>> Nnf1  Nnf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.7   1.8e+03      22      49 ..     144     171 ..     131     190 .. 0.74
   2 ?    5.7   1.2     0.017        18      18      51 ..     413     446 ..     405     460 .. 0.88
   3 ?    2.6   0.7      0.16   1.7e+02      79     105 ..     822     848 ..     817     851 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.7
                 HHHHHHHTTHHHHHHHHHHHHHHHHCCH CS
        Nnf1  22 feeIleerdvvekLneLDdlieeAkerr 49 
                  +e+++++ v+   neLD + +  k  +
  CCG91968.1 144 PQELIHQGLVRGVVNELDVVEALRKAPN 171
                 57899999999999***97765444333 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCHH- CS
        Nnf1  18 iraefeeIleerdvvekLneLDdlieeAkerree 51 
                 +++efe+I e ++++e   eL+++ +e k++  +
  CCG91968.1 413 AEREFEQIEETNELREGDEELEKIFNEEKKKTLS 446
                 799************************9998776 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Nnf1  79 akkeeqeeLearlqeleaenaelaeev 105
                 + ke+++ L++ ++e+++ n++l +e+
  CCG91968.1 822 SHKEAEDFLKKAVEEMNSRNERLNKEM 848
                 56899999***************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (989 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       946  (0.0527637); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 6461.86
//
Query:       CCG91969.1  [L=250]
Description: hypothetical protein MFUM_270067 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0076   16.2   0.3       0.08   12.9   0.0    2.7  3  TBPIP         TBPIP/Hop2 winged helix domain


Domain annotation for each model (and alignments):
>> TBPIP  TBPIP/Hop2 winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.28     5e+03      37      49 ..      49      61 ..      43      62 .. 0.79
   2 !   12.9   0.0   4.4e-06      0.08      14      60 ..     100     145 ..      96     146 .. 0.87
   3 ?   -1.9   0.0      0.18   3.2e+03      34      47 ..     165     178 ..     158     181 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.28
       TBPIP 37 kaLdeLvdegkii 49
                k  ++L +e+k+i
  CCG91969.1 49 KHFNQLIQENKVI 61
                5677899999986 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.4e-06
       TBPIP  14 nrPfsvqdvvanlqkklgKtavqkaLdeLvdegkiieKeyGKqkiYl 60 
                 ++P s++  ++    +  Kt  q+aLd+L    ++i   +GK+  Yl
  CCG91969.1 100 YKPISATQLYKKCL-NCPKTLFQEALDCLIIDSLLIPLRIGKTRYYL 145
                 88888888776554.689*************************9886 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.18
       TBPIP  34 avqkaLdeLvdegk 47 
                  + ka + L +e+k
  CCG91969.1 165 KIYKAYEDLLKENK 178
                 57899999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1040  (0.0580066); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2065.06
//
Query:       CCG91970.1  [L=479]
Description: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.3e-108  361.9   0.0   9.9e-108  361.0   0.0    1.4  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.0   0.0  5.5e-112  9.9e-108       1     451 []      25     453 ..      25     453 .. 0.92

  Alignments for each domain:
  == domain 1  score: 361.0 bits;  conditional E-value: 5.5e-112
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkT 99 
                 el++ + +ri+++++ ++a+ ++ ie+a ++A++l+k++ +g++ +pL+G+Pi++KD++d+   p+t+Gs  l++y+a++D  +v+rLk+a a+ilgkT
  CCG91970.1  25 ELIDLYAERINNIDPIIHAFTFLSIEAAKEKARALEKEILHGDTSSPLFGIPIAIKDHFDTVSTPSTYGSYLLKDYIAKEDHLLVKRLKEAKAIILGKT 123
                 78999********************************************************************************************** PP

                 --SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-....-SSTTT-EEEEEE CS
     Amidase 100 nmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv....alessldvvGpla 194
                 nm+ef++++++ n++f +trNPw++++t+GGSS+GsAAavA gl+pl++G+D+GGSiRiPAsfcg++G KP++gr++         +    ++++Gpl+
  CCG91970.1 124 NMPEFGFSATSHNPIFPATRNPWNLEYTSGGSSSGSAAAVATGLCPLSLGSDGGGSIRIPASFCGIFGYKPSRGRIPWPIGKgkdlENWELFSHAGPLS 222
                 *****************************************************************************755446767777899******* PP

                 SSHHHHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHH.CTT-EEEEEE-CCGGGHHHHHHHHH CS
     Amidase 195 rsvedlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLe.eaGhevvevelpsleealslyylil 292
                 r+ved++lll+v++g+dp d+ s++  ++++ ++  lk++ +gl+i++  ++g+a++dpev++ v+k ++  e ++G++++ev++ +++   ++++l++
  CCG91970.1 223 RTVEDAVLLLSVLSGPDPSDPYSLP--KAEFCWSDCLKEDIRGLKIAYSLDLGYARIDPEVKQIVTKSIELFEtDLGCKIEEVDPGWPDPSEAFSTLVY 319
                 ************************9..899******************************************84689**************99666666 PP

                 HHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCC CS
     Amidase 293 vaeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlge 391
                 + +                    vl++ ++++r++  +++++r +e+    ++ e+    + +a k+rr ++ e+ k++e++D+ l+P+++ p+++l  
  CCG91970.1 320 FGADL-----------------PVLKKAVSENRQKI-SSHITRFLER---SFKPED----FSQALKIRRKVIFEMSKLMEQYDLFLTPVTAVPPFPLYF 393
                 64433.................34556666555543.4444444433...344554....899***********************************9 PP

                 CCHHHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHHH CS
     Amidase 392 kdktidsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetlL 451
                 + ++i +      ll +++++ ++n++g+pa +vpag + +++PvG+q++g+++++ t+L
  CCG91970.1 394 QGPDIIDGERADPLLSWLPFTYIMNMTGQPAAAVPAGWTSKNVPVGLQIAGRHLDDLTTL 453
                 9999999999999999*99*************************************8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3558.35
//
Query:       CCG91971.1  [L=146]
Description: Cyanate lyase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-32  109.8   0.2    6.7e-32  109.2   0.2    1.3  1  Cyanate_lyase  Cyanate lyase C-terminal domain
    6.3e-05   22.9   0.0     0.0026   17.7   0.0    2.5  3  HTH_19         Helix-turn-helix domain
    8.4e-05   22.6   0.0    0.00029   20.8   0.0    1.9  2  HTH_3          Helix-turn-helix
     0.0044   17.3   0.0       0.01   16.2   0.0    1.5  2  HTH_31         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.045   14.2   0.0      0.082   13.4   0.0    1.4  1  HTH_26         Cro/C1-type HTH DNA-binding domain


Domain annotation for each model (and alignments):
>> Cyanate_lyase  Cyanate lyase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   0.2   1.9e-35   6.7e-32       2      69 .]      78     145 ..      77     145 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 1.9e-35
  Cyanate_lyase   2 avptdPliYRlyEivqvygealkelinEkfGdGimSaidfslkvekvedekgdrvkitldGKfLpykk 69 
                    ++p+dP++YR+yE++ vygea++eli EkfGdGimSa+d+++++ekve+++g r+ki ++GKfLpykk
     CCG91971.1  78 QIPNDPVLYRFYEAFGVYGEAMRELIWEKFGDGIMSAVDMEISIEKVESSAGPRIKIIMNGKFLPYKK 145
                    799***************************************************************96 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   7.2e-07    0.0026       3      61 ..       9      69 ..       8      73 .. 0.89
   2 ?    2.6   0.0      0.04   1.4e+02      33      54 ..      76      94 ..      73      99 .. 0.82
   3 ?   -2.5   0.0       1.5   5.5e+03      13      30 ..     119     136 ..     118     139 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7.2e-07
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidle...yllq 61
                ++  a e++ l+ eel++++gis  ++ a   gk  vp+ e    +++ lg+++e   yl++
  CCG91971.1  9 KILLAKEKKRLSWEELSKQTGISEVFLVAVCLGKA-VPKKEQAELLCHVLGLEPEiseYLQK 69
                566789*****************************.*****************998855554 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.04
      HTH_19 33 Engkkdvpsaelllkiaealgi 54
                E  k   p+ ++l++++ea+g+
  CCG91971.1 76 E--KQ-IPNDPVLYRFYEAFGV 94
                4..33.8999***********8 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.5
      HTH_19  13 ltqeelaerlgisrskis 30 
                 +++e++++ +g +++ i+
  CCG91971.1 119 ISIEKVESSAGPRIKIIM 136
                 688888888877666655 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   8.1e-08   0.00029       5      53 ..      14      62 ..      10      70 .. 0.94
   2 ?   -2.2   0.0       1.3   4.5e+03      33      50 ..      77      94 ..      76      96 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 8.1e-08
                HHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  5 RkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53
                 +++ ls eeL++ +G+s   + +   G++ P  e +++l+ +Lg++++
  CCG91971.1 14 KEKKRLSWEELSKQTGISEVFLVAVCLGKAVPKKEQAELLCHVLGLEPE 62
                47899****************************************9876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
                SSCSBHHHHHHHHHHHTS CS
       HTH_3 33 ernPsletlkklakaLgv 50
                +++P+  +l++  +a+gv
  CCG91971.1 77 KQIPNDPVLYRFYEAFGV 94
                578999999999999997 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.9e-06      0.01      10      59 ..      14      62 ..      12      67 .. 0.93
   2 ?   -2.3   0.0       1.7   5.9e+03      41      62 ..      79     100 ..      76     102 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.9e-06
      HTH_31 10 ReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpa 59
                 e+ +Ls ee+ +++g+se  l  +  G+  +p+ ++ e l+++lgl+p+
  CCG91971.1 14 KEKKRLSWEELSKQTGISEVFLVAVCLGKA-VPKKEQAELLCHVLGLEPE 62
                68899*************************.7***************986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
      HTH_31  41 rpspavlealaralgldpaera 62 
                 +p   vl ++ +a+g+ ++  +
  CCG91971.1  79 IPNDPVLYRFYEAFGVYGEAMR 100
                 5777888888899998555444 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.3e-05     0.082       8      55 ..      16      62 ..      10      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.3e-05
      HTH_26  8 drgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpg 55
                +++++  eL+++tgis+  l   + gk+  ++ +  + +C +Lg +p+
  CCG91971.1 16 KKRLSWEELSKQTGISEVFLVAVCLGKA-VPKKEQAELLCHVLGLEPE 62
                4555**********************95.899999*********9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1152.87
//
Query:       CCG91972.1  [L=327]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.057   13.4   0.1       0.16   12.0   0.1    1.7  1  DUF768    Protein of unknown function (DUF768)


Domain annotation for each model (and alignments):
>> DUF768  Protein of unknown function (DUF768)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   9.2e-06      0.16      29      60 ..     276     306 ..     275     309 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.2e-06
      DUF768  29 aeLteklfadAkaagikseeieeevesvyevi 60 
                 ++L+e+lfa+A++ g++  +++e    +   i
  CCG91972.1 276 KKLAEELFAEAEKFGFTH-KTDEQLHDLITKI 306
                 579*************98.9999987766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2622.80
//
Query:       CCG91973.1  [L=454]
Description: putative Nitrite reductase (NO-forming) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-13   48.5   0.0    4.2e-11   42.9   0.0    2.4  2  Cu-oxidase_3  Multicopper oxidase
    1.4e-07   31.4   0.0     0.0006   19.6   0.1    2.9  2  Cu-oxidase_2  Multicopper oxidase
    9.4e-05   22.5   0.0     0.0041   17.2   0.0    2.6  3  Cupredoxin_1  Cupredoxin-like domain


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0     7e-15   4.2e-11      11     116 ..     177     279 ..     167     281 .. 0.82
   2 ?    3.2   0.0     0.014        85      28     117 ..     337     431 ..     312     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 7e-15
                   TEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-SSS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE--TT..HHH CS
  Cu-oxidase_3  11 ggterevitvNgqfpgptievregdtvvvnvtNkldentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhshlsl..qqa 105
                   +g + + +t+Ng++pgp ++vr gdt+++++ N  +  +   +h ++ ++ +   G + vtq    pg++ +++f++ +  g ++Yh  + +  q+ 
    CCG91973.1 177 DGASFPYWTFNGKVPGPFLRVRVGDTLEIHLANDSTSRM---VHSVDFHAAWGFSGGAAVTQT--IPGQEKVFTFRALN-PGLYLYHCGTPMvaQHI 267
                   4555789**************************875554...566666666556677777776..49************.*******9999999666 PP

                   .TT-EEEEEEE- CS
  Cu-oxidase_3 106 .aGlaGaiiied 116
                    +G++G+i++e+
    CCG91973.1 268 aNGMYGLILVEP 279
                   6*********97 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.014
                   EEEEETT-EEEEEEEE-S.SS-B-EEEET--S-GG.....GSCSG......GG-B-TT-EEEEEEE--S-SEEEEEEE--TTHHHTT-EEEEEEE-H CS
  Cu-oxidase_3  28 tievregdtvvvnvtNkl.dentsihwhGlqqrktswmDGvpgvt......qcpiqpgesftyrftvkqqagtlwYhshlslqqaaGlaGaiiiedk 117
                    ++++ g+++++ + N+  + +  +h+ G  ++     DG    +      +  i++g     +ft k  +g +   +h+ ++  +Gl G +i+e +
    CCG91973.1 337 PLRAKVGEKIRIYFGNAGpNFSSNLHLLGAVLEHV-SPDGSVLSPlrentcSLFIPAGGAGFVEFTPKV-SGRYPLMDHFFARMEKGLGGELIVEGP 431
                   68889999999999999877788899999877766.788876554222111345888999999999999.999999999999988999999999877 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1     1e-07    0.0006      92     135 ..     233     279 ..     181     281 .. 0.89
   2 !    8.0   0.0   0.00036       2.2       4     134 ..     308     429 ..     305     432 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1e-07
                   EEEE-TTEEEEEEEES.S-EEEEEEESSH...HHHHTT-EEEEEEEC CS
  Cu-oxidase_2  92 tvqvppggwvairfkadnpGvwllHCHil...wHldqGmalqfvvrp 135
                   ++q+ pg++ +  f+a npG +l+HC      +H  +Gm++ ++v+p
    CCG91973.1 233 VTQTIPGQEKVFTFRALNPGLYLYHCGTPmvaQHIANGMYGLILVEP 279
                   6777899999****************876666********9999876 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00036
                   -SCCCCCCCEEEEEEEEEEEETCCTTTSSEEEEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE..-T CS
  Cu-oxidase_2   4 pklptllqltsgneeaseitngeefsentnvitlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqv..pp 97 
                   p++++++++  ++e++++ +ng+    ++++++++ ge ++i++ n ++     +Hl G   + ++ +++              p r +t ++  p+
    CCG91973.1 308 PQTSDITKIL-RSEPEYFVFNGSVGALSRHPLRAKVGEKIRIYFGNAGPNfSSNLHLLGAVLEHVSPDGSV-----------LSPLRENTCSLfiPA 392
                   5566667777.5666677779999999*********************99999*******99999777777...........788999988865588 PP

                   TEEEEEEEES.S-EEEEEEESSHHHHHTT-EEEEEEE CS
  Cu-oxidase_2  98 ggwvairfkadnpGvwllHCHilwHldqGmalqfvvr 134
                   gg   ++f+++  G++ l  H+   +++G+ ++++v+
    CCG91973.1 393 GGAGFVEFTPKVSGRYPLMDHFFARMEKGLGGELIVE 429
                   ***************9999999999999999998876 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.7     1e+04       2      22 ..     119     139 ..     117     141 .. 0.54
   2 !   17.2   0.0   6.9e-07    0.0041      38      97 ..     196     263 ..     189     270 .. 0.83
   3 ?    2.2   0.0     0.031   1.9e+02      68     104 .]     388     428 ..     331     428 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.7
  Cupredoxin_1   2 laalavllllsskaaaaaekt 22 
                   la+ ++++ ls++ +a +e+t
    CCG91973.1 119 LALFFFAFHLSAEPSATSEQT 139
                   345555555555555666655 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 6.9e-07
  Cupredoxin_1  38 evkagekvklkiknkdktp..eefesed......lgeekvlapgktttitiaplkpGeYeftcdmhmd 97 
                    v  g  +++++ n++++   +++ ++           ++  pg+++++t+++l+pG Y ++c+  m 
    CCG91973.1 196 RVRVGDTLEIHLANDSTSRmvHSVDFHAawgfsgGAAVTQTIPGQEKVFTFRALNPGLYLYHCGTPMV 263
                   6778888999999999984458888888888876556677789*********************8884 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.031
  Cupredoxin_1  68 kvlapgktttitiaplkpGeYeftcdmhm...d.akGkliV 104
                     ++ g +  ++++p+  G+Y++ + +     +   G+liV
    CCG91973.1 388 LFIPAGGAGFVEFTPKVSGRYPLMDHFFArmeKgLGGELIV 428
                   468899999999999******98887533112235666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3153.42
//
Query:       CCG91974.1  [L=587]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-18   64.5   0.0    1.4e-10   41.1   0.0    2.2  2  DUF799    Putative bacterial lipoprotein (DUF799)
      0.002   17.4   0.7      0.072   12.4   0.0    3.2  2  CsgG      Curli production assembly/transport component CsgG


Domain annotation for each model (and alignments):
>> DUF799  Putative bacterial lipoprotein (DUF799)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.6e-14   1.4e-10      40     127 ..     155     242 ..     150     279 .. 0.92
   2 !   21.1   0.0   2.1e-08   0.00019      47     129 ..     449     531 ..     434     556 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.6e-14
      DUF799  40 laeaGyYvlpvavveetfkqnGlteaediqevslaklreifgaDaalYlkvteyGtsYkvidsetevsasaklvDlrtGktlWegsat 127
                 la   + v+p ++++++++   + +   +q+++++ l + +gaDa +Y +v  y   Y+++ s  +v +s k++  rtGk+l++gs +
  CCG91974.1 155 LASREFEVVPLSIIDQVLQAKNIRTEVSLQSIKPEVLGKWLGADALVYGEVFPYQRFYMIMGSGIRVLLSIKIISSRTGKVLFSGSVN 242
                 6777789******************************************************************************976 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 2.1e-08
      DUF799  47 vlpvavveetfkqnGlteaediqevslaklreifgaDaalYlkvteyGtsYkvidsetevsasaklvDlrtGktlWegsatas 129
                 + +  +++ ++k  G ++ +d+ + ++  + + +g D+++Y kvt+  + Y+++ ++ +v +s k+v +++ ktl e s + +
  CCG91974.1 449 IQSLELTDSILKAHGWKKLSDMLATDPITVGDWLGVDCVIYGKVTSMMSIYSLMYAACTVGISVKFVSTKSSKTLVEVSGSRT 531
                 566778999******************************************************************88766554 PP

>> CsgG  Curli production assembly/transport component CsgG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0     8e-06     0.072      11     151 ..     107     244 ..     101     249 .. 0.78
   2 ?    0.4   0.2     0.037   3.3e+02     122     154 ..     502     534 ..     476     537 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8e-06
                 EEEEEEEEETT-...........-B--TTS.-TT-BSS-STHHHHHHHHHHHTTSEEEEE-TTHHHHHHHHHHHHHHHTTT.T-----S----SEEEEE CS
        CsgG  11 riaVldfsnqtg...........qykpqan.ssfstavgqglsdmLvqaLvksgwFvvlERedLqnlltErelirsgrkka.taaqlgkllgAdllveG 96 
                 riaVl+f ++++               + n +s++  + q +  ++   L+ s+ F v+  + ++++l+ +++      ++ + + lgk lgAd+lv G
  CCG91974.1 107 RIAVLPFLEKGSgkfsingvkidN-RDKDNlESWRWTIAQRVRRVFFGFLA-SREFEVVPLSIIDQVLQAKNIRTEVSLQSiKPEVLGKWLGADALVYG 203
                 566666644444456666666642.33444588888888888888887775.7889999999999999999997777778889999************* PP

                 EEEEEEEEEEEEEEEEEHHTEEEEEEEEEEEEEEEEEEEETTT-BEEEEEEEEEE CS
        CsgG  97 sitaydvnvktgGgGarylGigasskkreanvtvdlRlVdvstgevlasvtvegk 151
                  +  y +    +G G     i         +v + +++++++tg+vl+s +v+ +
  CCG91974.1 204 EVFPYQRFYMIMGSG-----I---------RVLLSIKIISSRTGKVLFSGSVNRN 244
                 ********9888777.....6.........7889999999999999999888766 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.037
                 EEEEEEEEEEEEEEETTT-BEEEEEEEEEEEEE CS
        CsgG 122 kkreanvtvdlRlVdvstgevlasvtvegkass 154
                 +++  +v + ++ V++++++ l+ v+++ ++ss
  CCG91974.1 502 MYAACTVGISVKFVSTKSSKTLVEVSGSRTESS 534
                 566677889999999999999999888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4016.94
//
Query:       CCG91975.1  [L=275]
Description: TPR repeats containing protein (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-40  133.7  22.1    9.7e-12   44.2   0.3    6.1  6  TPR_1          Tetratricopeptide repeat
    3.5e-36  122.6  15.6    1.1e-11   44.2   0.2    5.4  5  TPR_11         TPR repeat
      6e-36  119.6  17.1    1.9e-08   33.9   0.5    5.8  5  TPR_8          Tetratricopeptide repeat
    9.7e-35  115.9  21.0    4.1e-09   35.8   0.2    6.0  6  TPR_2          Tetratricopeptide repeat
    1.5e-25   87.7  11.7    4.1e-06   26.8   0.2    5.5  5  TPR_17         Tetratricopeptide repeat
    1.6e-24   86.0  10.9    3.1e-11   43.4   0.5    4.4  4  TPR_12         Tetratricopeptide repeat
    6.7e-23   81.1   0.7    1.5e-07   32.0   0.1    3.3  3  TPR_16         Tetratricopeptide repeat
    2.9e-22   77.0   3.0    0.00019   21.2   0.1    5.4  5  TPR_7          Tetratricopeptide repeat
    2.2e-21   74.7   1.7    0.00022   21.8   0.0    5.2  5  TPR_14         Tetratricopeptide repeat
    1.1e-18   67.4   4.6    3.6e-09   37.0   2.0    3.7  4  TPR_19         Tetratricopeptide repeat
    1.1e-15   57.5   0.1    1.4e-06   28.3   0.0    4.1  4  TPR_9          Tetratricopeptide repeat
    2.1e-15   56.2   6.4      0.011   16.3   0.0    5.4  5  TPR_6          Tetratricopeptide repeat
    3.5e-10   39.4   5.7     0.0031   17.3   0.1    5.0  5  TPR_10         Tetratricopeptide repeat
    3.7e-09   36.7  12.4    3.7e-05   23.9   3.6    3.3  3  ANAPC3         Anaphase-promoting complex, cyclosome, subunit
    6.8e-06   25.3   3.5      0.039   12.9   0.1    3.2  3  NARP1          NMDA receptor-regulated protein 1
    7.8e-06   25.3   5.1    2.5e-05   23.6   1.2    2.3  2  TPR_15         Tetratricopeptide repeat
    1.1e-05   24.6   1.4       0.21   10.6   0.1    3.1  3  ChAPs          ChAPs (Chs5p-Arf1p-binding proteins)
    0.00043   20.3   1.6        3.8    7.6   0.0    4.5  4  ANAPC5         Anaphase-promoting complex subunit 5
    0.00067   19.1   1.3        2.9    7.4   0.0    3.9  4  SHNi-TPR       SHNi-TPR
     0.0026   18.2   0.0        3.5    8.1   0.0    2.8  3  BTAD           Bacterial transcriptional activator domain
     0.0052   16.2   0.3       0.16   11.3   0.2    2.4  2  TPR_MalT       MalT-like TPR region
     0.0068   16.5   1.2        9.3    6.3   0.3    3.6  3  DUF3856        Domain of Unknown Function (DUF3856)
     0.0074   16.3  14.2      0.069   13.2   1.4    5.3  5  MIT            MIT (microtubule interacting and transport) do
     0.0086   15.8   5.1       0.74    9.5   0.6    3.5  2  RPN7           26S proteasome subunit RPN7
     0.0098   15.9   7.2         20    5.3   0.0    4.5  4  Fis1_TPR_C     Fis1 C-terminal tetratricopeptide repeat
  ------ inclusion threshold ------
      0.015   15.3   1.0        1.2    9.1   0.0    2.6  2  DUF627         Protein of unknown function (DUF627)
      0.016   14.7   2.7        2.1    7.8   0.4    2.8  2  DUF5112        Domain of unknown function (DUF5112)
      0.018   14.4   0.1       0.83    9.0   0.0    2.5  2  Coatomer_E     Coatomer epsilon subunit
      0.026   14.9   2.9       0.75   10.2   0.2    3.3  3  TPR_20         Tetratricopeptide repeat
      0.052   13.6   0.0        3.2    7.9   0.0    2.7  3  Ribosomal_S16  Ribosomal protein S16
       0.11   12.3   7.3        9.6    6.0   0.1    3.9  4  DUF5113        Domain of unknown function (DUF5113)
       0.12   11.9   5.6       0.14   11.6   1.6    2.5  2  DUF3829        Protein of unknown function (DUF3829)
       0.16   12.6   0.2    1.7e+02    3.3   0.0    4.0  3  TPR_4          Tetratricopeptide repeat
        2.4    8.2   7.9        3.9    7.5   2.6    3.0  2  SRP_TPR_like   Putative TPR-like repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.56     3e+02      21      32 ..      71      82 ..      71      84 .. 0.83
   2 !   30.5   2.2   3.8e-10     2e-07       1      34 []     104     137 ..     104     137 .. 0.94
   3 !   29.4   0.3   8.3e-10   4.4e-07       1      28 [.     138     165 ..     138     170 .. 0.96
   4 !   44.2   0.3   1.8e-14   9.7e-12       1      33 [.     172     204 ..     172     205 .. 0.97
   5 !   37.2   0.1     3e-12   1.6e-09       1      34 []     206     239 ..     206     239 .. 0.98
   6 ?    1.7   0.0       0.5   2.6e+02       3      17 ..     242     256 ..     241     258 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.56
                HHHHHHHHHHST CS
       TPR_1 21 leyyekALelnP 32
                l ++ kA++l+ 
  CCG91975.1 71 LHFFTKAIQLEQ 82
                578******986 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 3.8e-10
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 a a++ lG ay +lg y  A+e+y+kA+ l  ++
  CCG91975.1 104 AAAYFFLGIAYENLGHYSLAIEAYKKAIDLKKDF 137
                 789**************************98775 PP

  == domain 3  score: 29.4 bits;  conditional E-value: 8.3e-10
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekAL 28 
                 aka++nlG +y  lg+y +A e+++ AL
  CCG91975.1 138 AKAWCNLGTCYVFLGQYAKATEAFKHAL 165
                 89************************99 PP

  == domain 4  score: 44.2 bits;  conditional E-value: 1.8e-14
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 aka+ nlG++y +lg+y +A+++ +kA++l P+
  CCG91975.1 172 AKAWSNLGACYIQLGQYSQAIKALKKAISLKPD 204
                 89******************************8 PP

  == domain 5  score: 37.2 bits;  conditional E-value: 3e-12
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 a++++nlG ay + ++y +A e  +kA+el+Pn+
  CCG91975.1 206 AESWCNLGIAYGERKDYHKAMESLRKAVELRPNY 239
                 799*****************************97 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.5
                 HHHHHHHHHHHTT-H CS
       TPR_1   3 alynlGnayfklgky 17 
                 a+ nl+ +y k +++
  CCG91975.1 242 AWWNLAKIYEKTKNL 256
                 677********9986 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.023        12      25      42 .]     101     118 ..      98     118 .. 0.93
   2 !   30.4   0.3   4.2e-10   2.2e-07       7      36 ..     117     146 ..     116     149 .. 0.92
   3 !   21.5   0.4   2.7e-07   0.00014       4      38 ..     148     182 ..     145     182 .. 0.91
   4 !   44.2   0.2   2.1e-14   1.1e-11       4      39 ..     182     217 ..     181     219 .. 0.96
   5 !   33.2   0.1   5.6e-11   2.9e-08       4      40 ..     216     252 ..     215     254 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.023
      TPR_11  25 PdnaeayynLGlayykqG 42 
                 P+ a ay+ LG ay ++G
  CCG91975.1 101 PSEAAAYFFLGIAYENLG 118
                 78899**********998 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 4.2e-10
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGl 36 
                 +G y  AieaYkkA++l+ d+a a++nLG 
  CCG91975.1 117 LGHYSLAIEAYKKAIDLKKDFAKAWCNLGT 146
                 68899************************5 PP

  == domain 3  score: 21.5 bits;  conditional E-value: 2.7e-07
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGlay 38 
                 y+ +G+y +A ea+k Al+  P+ a a++nLG+ y
  CCG91975.1 148 YVFLGQYAKATEAFKHALADQPNLAKAWSNLGACY 182
                 5568****************************865 PP

  == domain 4  score: 44.2 bits;  conditional E-value: 2.1e-14
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGlayy 39 
                 y ++G+y +Ai+a+kkA+ l+Pd ae ++nLG ay 
  CCG91975.1 182 YIQLGQYSQAIKALKKAISLKPDLAESWCNLGIAYG 217
                 89*********************************6 PP

  == domain 5  score: 33.2 bits;  conditional E-value: 5.6e-11
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 y e+ +y +A+e+++kA++l+P++ ea++nL+++y k
  CCG91975.1 216 YGERKDYHKAMESLRKAVELRPNYMEAWWNLAKIYEK 252
                 66899******************************98 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   1.4   1.8e-09   9.4e-07       1      33 [.     104     136 ..     104     137 .. 0.95
   2 !   23.8   0.1   5.9e-08   3.1e-05       1      28 [.     138     165 ..     138     170 .. 0.95
   3 !   33.9   0.5   3.6e-11   1.9e-08       1      33 [.     172     204 ..     172     205 .. 0.97
   4 !   32.9   0.1   7.1e-11   3.8e-08       1      34 []     206     239 ..     206     239 .. 0.97
   5 !    7.9   0.0    0.0076         4       2      16 ..     241     255 ..     241     258 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.8e-09
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 a ay+ lg +y++lg y  A+e+y+ka++l++d
  CCG91975.1 104 AAAYFFLGIAYENLGHYSLAIEAYKKAIDLKKD 136
                 579***************************987 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 5.9e-08
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekal 28 
                 a+a++nlg +y  lg+y +A e++++al
  CCG91975.1 138 AKAWCNLGTCYVFLGQYAKATEAFKHAL 165
                 79************************98 PP

  == domain 3  score: 33.9 bits;  conditional E-value: 3.6e-11
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 a+a+ nlg +y++lg+y +A+++++ka++l+pd
  CCG91975.1 172 AKAWSNLGACYIQLGQYSQAIKALKKAISLKPD 204
                 79******************************7 PP

  == domain 4  score: 32.9 bits;  conditional E-value: 7.1e-11
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 ae+++nlg +y + +dy++A+e+++ka+el+p++
  CCG91975.1 206 AESWCNLGIAYGERKDYHKAMESLRKAVELRPNY 239
                 79******************************85 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.0076
                 CHHHHHHHHHHHTT- CS
       TPR_8   2 eayynlgsiylklgd 16 
                 ea++nl++iy+k+++
  CCG91975.1 241 EAWWNLAKIYEKTKN 255
                 79**********998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       3.5   1.8e+03      22      31 ..      72      81 ..      71      83 .. 0.83
   2 !   27.8   1.9     3e-09   1.6e-06       1      32 [.     104     135 ..     104     137 .. 0.93
   3 !   26.8   0.3   6.3e-09   3.3e-06       1      33 [.     138     170 ..     138     171 .. 0.96
   4 !   35.8   0.2   7.8e-12   4.1e-09       1      33 [.     172     204 ..     172     205 .. 0.97
   5 !   28.3   0.1   2.1e-09   1.1e-06       1      34 []     206     239 ..     206     239 .. 0.97
   6 !    7.5   0.0    0.0091       4.8       2      17 ..     241     256 ..     240     259 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 3.5
       TPR_2 22 eafekAleld 31
                ++f kA++l+
  CCG91975.1 72 HFFTKAIQLE 81
                689****996 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 3e-09
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldP 32 
                 a a++ lG ay++lg+y  A+ea++kA+ l  
  CCG91975.1 104 AAAYFFLGIAYENLGHYSLAIEAYKKAIDLKK 135
                 689*************************9976 PP

  == domain 3  score: 26.8 bits;  conditional E-value: 6.3e-09
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a+a++nlG +y  lg+y++A eaf+ Al+  Pn
  CCG91975.1 138 AKAWCNLGTCYVFLGQYAKATEAFKHALADQPN 170
                 79***************************9998 PP

  == domain 4  score: 35.8 bits;  conditional E-value: 7.8e-12
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a+a+ nlG +y++lg+y +A++a++kA++l P+
  CCG91975.1 172 AKAWSNLGACYIQLGQYSQAIKALKKAISLKPD 204
                 79*****************************98 PP

  == domain 5  score: 28.3 bits;  conditional E-value: 2.1e-09
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 ae ++nlG ay +++dy +A e ++kA+el Pn+
  CCG91975.1 206 AESWCNLGIAYGERKDYHKAMESLRKAVELRPNY 239
                 799*****************************96 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.0091
       TPR_2   2 ealynlGlayyklgdy 17 
                 ea++nl+++y+k +++
  CCG91975.1 241 EAWWNLAKIYEKTKNL 256
                 89***********997 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.017         9       4      34 .]      95     125 ..      94     125 .. 0.91
   2 !   26.8   0.2   7.7e-09   4.1e-06       1      32 [.     126     157 ..     126     159 .. 0.96
   3 !   21.7   0.4   3.3e-07   0.00017       2      34 .]     161     193 ..     160     193 .. 0.94
   4 !   22.6   0.1   1.7e-07     9e-05       2      32 ..     195     225 ..     194     227 .. 0.94
   5 !   13.6   0.1   0.00012     0.065       3      32 ..     230     259 ..     229     264 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.017
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtArq 34 
                 k ++  P+ a ay+ L+ +++++G +  A++
  CCG91975.1  95 KWIATFPSEAAAYFFLGIAYENLGHYSLAIE 125
                 789999*******************998875 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 7.7e-09
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtA 32 
                 +y+ka++l ++ a+a++nL++++  +G++++A
  CCG91975.1 126 AYKKAIDLKKDFAKAWCNLGTCYVFLGQYAKA 157
                 5****************************998 PP

  == domain 3  score: 21.7 bits;  conditional E-value: 3.3e-07
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 ++ al+  Pn a+a+ nL+ ++ ++G++ +A++
  CCG91975.1 161 FKHALADQPNLAKAWSNLGACYIQLGQYSQAIK 193
                 899***************************985 PP

  == domain 4  score: 22.6 bits;  conditional E-value: 1.7e-07
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 ++ka+ l P+ a++++nL+ ++ +++d+ +A
  CCG91975.1 195 LKKAISLKPDLAESWCNLGIAYGERKDYHKA 225
                 68**************************998 PP

  == domain 5  score: 13.6 bits;  conditional E-value: 0.00012
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtA 32 
                 +ka+el Pn+ +a+ nLA++++k ++l ++
  CCG91975.1 230 RKAVELRPNYMEAWWNLAKIYEKTKNLVEK 259
                 69********************99887754 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   1.5e-06    0.0008      43      76 ..     102     135 ..     101     136 .. 0.93
   2 !   43.4   0.5   5.9e-14   3.1e-11       2      75 ..     137     202 ..     136     204 .. 0.92
   3 !   43.2   0.4     7e-14   3.7e-11       2      76 ..     171     237 ..     170     238 .. 0.94
   4 ?   -0.5   0.0       2.9   1.5e+03       4      19 ..     241     256 ..     239     262 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.5e-06
      TPR_12  43 ltattlrnLgrlyralgryeeAlelleealaiae 76 
                  +a++++ Lg++y+ lg+y  A+e++++a+++++
  CCG91975.1 102 SEAAAYFFLGIAYENLGHYSLAIEAYKKAIDLKK 135
                 689***************************9987 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 5.9e-14
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                  a+a+ nl++++  lg+y++A e +++al         d p++a +  nLg +y +lg+y +A+++l++a+ ++
  CCG91975.1 137 FAKAWCNLGTCYVFLGQYAKATEAFKHAL--------ADQPNLAKAWSNLGACYIQLGQYSQAIKALKKAISLK 202
                 6899************************3........56778****************************9876 PP

  == domain 3  score: 43.2 bits;  conditional E-value: 7e-14
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +a+a++nl+a++ +lg+y +A++ l+ka+ +      pd   +a++ +nLg++y ++++y +A e l++a+++++
  CCG91975.1 171 LAKAWSNLGACYIQLGQYSQAIKALKKAISLK-----PD---LAESWCNLGIAYGERKDYHKAMESLRKAVELRP 237
                 6899************************8888.....76...9*****************************986 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 2.9
      TPR_12   4 talnnlaavlrrlgry 19 
                  a+ nla ++ + +++
  CCG91975.1 241 EAWWNLAKIYEKTKNL 256
                 4666888888887775 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   3.4e-07   0.00018      27      63 ..     100     133 ..      97     136 .. 0.90
   2 !   32.0   0.1   2.8e-10   1.5e-07       2      66 ..     143     204 ..     142     206 .. 0.93
   3 !   23.9   0.0   9.5e-08     5e-05       2      52 ..     211     258 ..     210     270 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.4e-07
      TPR_16  27 dpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 +   P  a+A+++lg a+  +g + +A+++y++a++ 
  CCG91975.1 100 F---PSEAAAYFFLGIAYENLGHYSLAIEAYKKAIDL 133
                 5...99***************************9975 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 2.8e-10
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 +l++ ++ +g+y++A +a++ al+++   P  a A+ +lg ++ ++g +  A+ ++++a+   pd
  CCG91975.1 143 NLGTCYVFLGQYAKATEAFKHALADQ---PNLAKAWSNLGACYIQLGQYSQAIKALKKAISLKPD 204
                 567778999*****************...*****************************9988887 PP

  == domain 3  score: 23.9 bits;  conditional E-value: 9.5e-08
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlae 52 
                 +l+ a+ +++dy +A + l+ a++++   P   eA+++l+ ++ + ++l e
  CCG91975.1 211 NLGIAYGERKDYHKAMESLRKAVELR---PNYMEAWWNLAKIYEKTKNLVE 258
                 799***********************...***************9999876 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   3.5e-07   0.00019       1      31 [.     106     136 ..     106     139 .. 0.89
   2 !   17.3   0.0   6.7e-06    0.0035       1      33 [.     140     170 ..     140     173 .. 0.92
   3 !   19.9   0.0   9.2e-07   0.00049       1      30 [.     174     203 ..     174     207 .. 0.84
   4 !   13.2   0.0   0.00014     0.072       1      32 [.     208     237 ..     208     239 .. 0.88
   5 ?    1.1   0.0      0.97   5.1e+02       1      11 [.     242     252 ..     242     258 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.5e-07
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 a++ L+ +y++lG+y+ Aie y++++ l kd
  CCG91975.1 106 AYFFLGIAYENLGHYSLAIEAYKKAIDLKKD 136
                 7999********************7777666 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 6.7e-06
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdpe 33 
                 a++nL+ +y+ lG+y++A e ++   al+++p+
  CCG91975.1 140 AWCNLGTCYVFLGQYAKATEAFKH--ALADQPN 170
                 79**********************..9999887 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 9.2e-07
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltk 30 
                 a++nL+ +y +lG+y++Ai+ +++++ l  
  CCG91975.1 174 AWSNLGACYIQLGQYSQAIKALKKAISLKP 203
                 799*********************554444 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 0.00014
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 +++nL+ +y ++ dy +A e +++  a++ +p
  CCG91975.1 208 SWCNLGIAYGERKDYHKAMESLRK--AVELRP 237
                 69**********************..666555 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.97
       TPR_7   1 aLlnLarlysr 11 
                 a+ nLa +y++
  CCG91975.1 242 AWWNLAKIYEK 252
                 678******97 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.019       9.9       8      42 ..      77     111 ..      73     113 .. 0.90
   2 !   20.7   0.0   8.9e-07   0.00047       2      43 ..     105     146 ..     104     147 .. 0.93
   3 !   13.2   0.1   0.00024      0.13      11      43 ..     148     180 ..     144     181 .. 0.88
   4 !   21.8   0.0   4.2e-07   0.00022       2      42 ..     173     213 ..     172     215 .. 0.92
   5 !   18.5   0.1   4.7e-06    0.0025       6      43 ..     211     248 ..     206     249 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.019
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawllla 42 
                 a  l+++ d+++ +   ++++a++P++a+a+++l+
  CCG91975.1  77 AIQLEQSKDWKGLVVFSKKWIATFPSEAAAYFFLG 111
                 678899999999999999**************997 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 8.9e-07
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +a+  l+ a+++lG +  Ai+++++a++l  d+a aw  l+ 
  CCG91975.1 105 AAYFFLGIAYENLGHYSLAIEAYKKAIDLKKDFAKAWCNLGT 146
                 68899********************************99985 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 0.00024
      TPR_14  11 llalGdpdeAiallrralalaPddaeawlllaq 43 
                 +  lG++++A ++++ ala++P+ a aw  l+ 
  CCG91975.1 148 YVFLGQYAKATEAFKHALADQPNLAKAWSNLGA 180
                 5669************************98875 PP

  == domain 4  score: 21.8 bits;  conditional E-value: 4.2e-07
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 +a+  l++ + +lG++ +Ai++l++a++l Pd ae w  l+
  CCG91975.1 173 KAWSNLGACYIQLGQYSQAIKALKKAISLKPDLAESWCNLG 213
                 689999****************************9998876 PP

  == domain 5  score: 18.5 bits;  conditional E-value: 4.7e-06
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                  l+ a+ ++ d+ +A++ lr+a++l P+  eaw  la+
  CCG91975.1 211 NLGIAYGERKDYHKAMESLRKAVELRPNYMEAWWNLAK 248
                 58899999*************************99998 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1     0.017       8.8      22      58 ..     101     137 ..      95     141 .. 0.84
   2 !   25.6   0.6   2.5e-08   1.3e-05       5      59 ..     118     172 ..     116     176 .. 0.92
   3 !   37.0   2.0   6.8e-12   3.6e-09       5      57 ..     152     204 ..     151     209 .. 0.95
   4 !   18.4   0.0   4.5e-06    0.0024       4      41 ..     219     256 ..     218     261 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.017
      TPR_19  22 pknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 p  a+a   L +a+ +lg++  A+++ +++ + ++d 
  CCG91975.1 101 PSEAAAYFFLGIAYENLGHYSLAIEAYKKAIDLKKDF 137
                 6778888899****************99999988884 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 2.5e-08
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdda 59 
                 g y  A++++++a++ + + a a+ +L  +++ lgq+++A ++ + +++++p+ a
  CCG91975.1 118 GHYSLAIEAYKKAIDLKKDFAKAWCNLGTCYVFLGQYAKATEAFKHALADQPNLA 172
                 67888***********************************************954 PP

  == domain 3  score: 37.0 bits;  conditional E-value: 6.8e-12
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 g+ya A ++++ al++ p+ a a+ +L  ++++lgq+ +A+++L+++   +pd
  CCG91975.1 152 GQYAKATEAFKHALADQPNLAKAWSNLGACYIQLGQYSQAIKALKKAISLKPD 204
                 9**********************************************999999 PP

  == domain 4  score: 18.4 bits;  conditional E-value: 4.5e-06
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgql 41 
                 ++dy  A++ l++a +  p++ ea+ +LA+++ ++++l
  CCG91975.1 219 RKDYHKAMESLRKAVELRPNYMEAWWNLAKIYEKTKNL 256
                 78*********************************997 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00025      0.13       7      60 ..      82     135 ..      76     140 .. 0.82
   2 !   11.2   0.0   0.00059      0.31      28      61 ..     137     170 ..     132     174 .. 0.87
   3 !   20.4   0.0     8e-07   0.00042      25      61 ..     168     204 ..     164     206 .. 0.93
   4 !   28.3   0.0   2.7e-09   1.4e-06       2      61 ..     179     238 ..     178     243 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00025
       TPR_9   7 reedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 +++dw  +   +   ++ +P ++  ++  G++++ lG++s A+++   +++l  
  CCG91975.1  82 QSKDWKGLVVFSKKWIATFPSEAAAYFFLGIAYENLGHYSLAIEAYKKAIDLKK 135
                 55666666666666777899999***********************99999865 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00059
       TPR_9  28 dpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                  +  +   G +++ lG++++A +++ ++la +p+
  CCG91975.1 137 FAKAWCNLGTCYVFLGQYAKATEAFKHALADQPN 170
                 5778999**********************99885 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 8e-07
       TPR_9  25 aPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                 +P+ +  +   G ++ qlG++s+A+++L  +++l pd
  CCG91975.1 168 QPNLAKAWSNLGACYIQLGQYSQAIKALKKAISLKPD 204
                 699999****************************998 PP

  == domain 4  score: 28.3 bits;  conditional E-value: 2.7e-09
       TPR_9   2 kaiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                  a++i+  ++++a++++   + l+Pd +e +   G+++ ++ ++++A++ L  +++l p+
  CCG91975.1 179 GACYIQLGQYSQAIKALKKAISLKPDLAESWCNLGIAYGERKDYHKAMESLRKAVELRPN 238
                 689*****************************************************9995 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.3    0.0001     0.053       2      28 ..     106     132 ..     105     133 .. 0.94
   2 !    9.6   0.0    0.0029       1.5       5      32 ..     143     170 ..     140     171 .. 0.92
   3 !   16.3   0.0   2.2e-05     0.011       5      28 ..     177     200 ..     173     204 .. 0.88
   4 !   12.6   0.0   0.00032      0.17       5      32 ..     211     238 ..     211     239 .. 0.94
   5 ?    2.5   0.0      0.53   2.8e+02       1      15 [.     241     255 ..     241     267 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlik 28 
                 A++ l+ +y++lg ++ A+ea+++ i+
  CCG91975.1 106 AYFFLGIAYENLGHYSLAIEAYKKAID 132
                 8999********************997 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0029
                 HHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYPd 32 
                 +l+ +y  lg+++kA ea++  + + P+
  CCG91975.1 143 NLGTCYVFLGQYAKATEAFKHALADQPN 170
                 69******99*********999999887 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 +l+ +y++lg++++A++al++ i+
  CCG91975.1 177 NLGACYIQLGQYSQAIKALKKAIS 200
                 799*****9************997 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 0.00032
                 HHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYPd 32 
                 +l+ +y + +d+ kA+e l++ ++  P+
  CCG91975.1 211 NLGIAYGERKDYHKAMESLRKAVELRPN 238
                 5899****99***************998 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgd 15 
                 +A ++la+ y+k+++
  CCG91975.1 241 EAWWNLAKIYEKTKN 255
                 799********9766 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.013       7.1       8      32 ..     110     134 ..     104     136 .. 0.91
   2 ?    4.5   0.0     0.062        33       7      30 ..     143     166 ..     142     168 .. 0.92
   3 !    9.9   0.0    0.0013      0.68       6      31 ..     176     201 ..     171     202 .. 0.92
   4 !   17.3   0.1   5.9e-06    0.0031       7      32 ..     211     236 ..     205     236 .. 0.93
   5 ?   -0.9   0.0       3.2   1.7e+03       7      26 ..     245     264 ..     245     272 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
      TPR_10   8 LanalrqrgrydeAealleealair 32 
                 L++a+ ++g y  A + +++a+++ 
  CCG91975.1 110 LGIAYENLGHYSLAIEAYKKAIDLK 134
                 9********************9875 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.062
      TPR_10   7 NLanalrqrgrydeAealleeala 30 
                 NL+  +  +g+y++A + +++ala
  CCG91975.1 143 NLGTCYVFLGQYAKATEAFKHALA 166
                 89999999**************98 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0013
      TPR_10   6 nNLanalrqrgrydeAealleealai 31 
                 +NL++ + q+g+y +A + l++a+++
  CCG91975.1 176 SNLGACYIQLGQYSQAIKALKKAISL 201
                 7**********************985 PP

  == domain 4  score: 17.3 bits;  conditional E-value: 5.9e-06
      TPR_10   7 NLanalrqrgrydeAealleealair 32 
                 NL++a+ +r++y++A++ l++a+++r
  CCG91975.1 211 NLGIAYGERKDYHKAMESLRKAVELR 236
                 ***********************986 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 3.2
      TPR_10   7 NLanalrqrgrydeAealle 26 
                 NLa ++ +++++ e ++  +
  CCG91975.1 245 NLAKIYEKTKNLVEKVKAEQ 264
                 89999999999988887755 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   2.6   1.5e-05    0.0079      17      81 ..      98     163 ..      61     164 .. 0.85
   2 !   23.9   3.6     7e-08   3.7e-05      29      82 .]     144     198 ..     138     198 .. 0.93
   3 !   11.6   0.2   0.00048      0.25      28      72 ..     211     256 ..     196     262 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.5e-05
                 .HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  17 aaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 a+ +  + + ++l+ ++ ++g y  A+e ++ka +l++   +++  ++ c++ L++y +A  a+++
  CCG91975.1  98 ATFPSEAAAYFFLGIAYENLGHYSLAIEAYKKAiDLKKDFAKAWCNLGTCYVFLGQYAKATEAFKH 163
                 4555566667778***********************************************999875 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 7e-08
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-SS CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLekl 82 
                 l+ c+  +gqy +A e ++ a   +++  +++  ++ c+++L++y +Ai+aL+k+
  CCG91975.1 144 LGTCYVFLGQYAKATEAFKHAlADQPNLAKAWSNLGACYIQLGQYSQAIKALKKA 198
                 789******************88888888***********************985 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00048
                 HHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-H CS
      ANAPC3  28 llAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkky 72 
                  l+ ++ ++++y++A+e lrka +l+++ ++++  +A+ + k k++
  CCG91975.1 211 NLGIAYGERKDYHKAMESLRKAvELRPNYMEAWWNLAKIYEKTKNL 256
                 566788899****************************999998876 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.2     0.002         1     194     252 ..     106     164 ..      77     168 .. 0.92
   2 ?    3.8   0.0     0.042        22     201     230 ..     181     210 ..     167     216 .. 0.86
   3 !   12.9   0.1   7.5e-05     0.039     201     249 ..     215     263 ..     210     272 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.002
                 HHHHHHHHHHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
       NARP1 194 vlyflAqhydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeea 252
                 +++fl   y++lg+++ A+e   kai+ +  +   + + ++ +   G+  kA+e+ ++a
  CCG91975.1 106 AYFFLGIAYENLGHYSLAIEAYKKAIDLKKDFAKAWCNLGTCYVFLGQYAKATEAFKHA 164
                 79***************************************************998887 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.042
                 HHHHHT-SHHHHHHHHHHHHH-TT-HHHHH CS
       NARP1 201 hydklgsrekAleyidkaiehtptlvelyl 230
                  y +lg++++A++ + kai+ +p l e + 
  CCG91975.1 181 CYIQLGQYSQAIKALKKAISLKPDLAESWC 210
                 577899******************999775 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 7.5e-05
                 HHHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHH CS
       NARP1 201 hydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevm 249
                  y + ++++kA+e + ka+e  p+ +e + + a+i++++ +l + +++ 
  CCG91975.1 215 AYGERKDYHKAMESLRKAVELRPNYMEAWWNLAKIYEKTKNLVEKVKAE 263
                 5888999*******************************99998776655 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   1.2   4.7e-08   2.5e-05     109     241 ..      70     199 ..      27     207 .. 0.89
   2 ?    3.5   0.3     0.067        35     149     179 ..     209     239 ..     193     271 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 4.7e-08
      TPR_15 109 sprlLssalellerakdydriaellksleeeeaaeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawk 207
                 +  ++++a++l e++kd++ ++ + k+    +++ ++aa ++ ++ +y++ g+   A+++y++A++l+ d +++  +l   ++ lg++a++ e+ k+  
  CCG91975.1  70 QLHFFTKAIQL-EQSKDWKGLVVFSKK--WIATFPSEAAAYFFLGIAYENLGHYSLAIEAYKKAIDLKKDFAKAWCNLGTCYVFLGQYAKATEAFKHAL 165
                 56678888885.789999999999888..556788888888888999***************************99999999***************** PP

      TPR_15 208 araesdasLwgplaaAlllLgrpkkALeylrkqa 241
                 a++ + a+ w  l+a +  Lg++++A + l+k  
  CCG91975.1 166 ADQPNLAKAWSNLGACYIQLGQYSQAIKALKKAI 199
                 **************************99888765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.067
      TPR_15 149 llaraelyrqegqtdaAlrdyreAlalapds 179
                 +  ++ +y ++ +  +A++ +r+A++l p+ 
  CCG91975.1 209 WCNLGIAYGERKDYHKAMESLRKAVELRPNY 239
                 5555556666667777777777777777763 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.031        17     249     287 ..     119     157 ..     106     161 .. 0.90
   2 !   10.6   0.1   0.00039      0.21     252     291 ..     156     195 ..     151     203 .. 0.90
   3 !    9.0   0.0    0.0011       0.6     246     283 ..     218     255 ..     210     260 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.031
                 --HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHH CS
       ChAPs 249 keelAlevakravksaPsefktWalLvkvYikledienA 287
                 +++lA+e+ k+a+++     k W  L  +Y+ l+++ +A
  CCG91975.1 119 HYSLAIEAYKKAIDLKKDFAKAWCNLGTCYVFLGQYAKA 157
                 5799************9999**************99887 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00039
                 HHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHH CS
       ChAPs 252 lAlevakravksaPsefktWalLvkvYikledienALltL 291
                  A+e+ k+a    P+  k W  L  +Yi+l+++++A+ +L
  CCG91975.1 156 KATEAFKHALADQPNLAKAWSNLGACYIQLGQYSQAIKAL 195
                 578888999999************************9988 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0011
                 HSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT- CS
       ChAPs 246 skkkeelAlevakravksaPsefktWalLvkvYikled 283
                 ++k+++ A+e  ++av++ P+  + W  L+k+Y k ++
  CCG91975.1 218 ERKDYHKAMESLRKAVELRPNYMEAWWNLAKIYEKTKN 255
                 567889999************************98876 PP

>> ANAPC5  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.9     2e+03      61      91 ..      71     101 ..      65     104 .. 0.79
   2 ?    4.8   0.2     0.054        29      37      67 ..     134     164 ..     104     167 .. 0.65
   3 !    7.6   0.0    0.0072       3.8      42      70 ..     173     201 ..     165     210 .. 0.85
   4 ?    1.7   0.0      0.53   2.8e+02      10      23 ..     218     231 ..     213     251 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.9
      ANAPC5  61 vkaleeairlArenkDkscLalalawlarll 91 
                 ++ ++ ai+l + +  k  + +   w+a + 
  CCG91975.1  71 LHFFTKAIQLEQSKDWKGLVVFSKKWIATFP 101
                 5678899999998888888889999999886 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.054
      ANAPC5  37 kksyqyalLnlaslhadfghneeAvkaleea 67 
                 kk +  a  nl +    +g++++A++a++ a
  CCG91975.1 134 KKDFAKAWCNLGTCYVFLGQYAKATEAFKHA 164
                 4566677777777777777777777777766 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0072
      ANAPC5  42 yalLnlaslhadfghneeAvkaleeairl 70 
                  a  nl     ++g++ +A+kal+ ai+l
  CCG91975.1 173 KAWSNLGACYIQLGQYSQAIKALKKAISL 201
                 56668888999****************87 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.53
      ANAPC5  10 rakdYqqaldsLhr 23 
                 ++kdY++a++sL +
  CCG91975.1 218 ERKDYHKAMESLRK 231
                 57899999999976 PP

>> SHNi-TPR  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.7   3.7e+02      19      31 ..     122     134 ..     114     136 .. 0.79
   2 ?   -2.1   0.0       5.1   2.7e+03       3      22 ..     147     166 ..     147     167 .. 0.58
   3 !    7.4   0.0    0.0054       2.9      15      31 ..     186     202 ..     183     207 .. 0.91
   4 ?    6.6   0.0      0.01       5.3      17      36 ..     222     241 ..     218     242 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.7
    SHNi-TPR  19 qAveDlrkaLeLr 31 
                  A+e ++ka++L+
  CCG91975.1 122 LAIEAYKKAIDLK 134
                 5888899999987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.1
    SHNi-TPR   3 vydlLGEislEnenFpqAve 22 
                 +y++LG     +e F+ A+ 
  CCG91975.1 147 CYVFLGQYAKATEAFKHALA 166
                 78888754445555665555 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0054
    SHNi-TPR  15 enFpqAveDlrkaLeLr 31 
                 ++++qA++ l+ka+ L+
  CCG91975.1 186 GQYSQAIKALKKAISLK 202
                 59*************98 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.01
    SHNi-TPR  17 FpqAveDlrkaLeLreqllp 36 
                 ++ A e lrka+eLr ++++
  CCG91975.1 222 YHKAMESLRKAVELRPNYME 241
                 7889999********99987 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.018       9.5      56     124 ..      65     132 ..      52     137 .. 0.87
   2 !    8.1   0.0    0.0066       3.5      60     122 ..     136     198 ..     132     208 .. 0.84
   3 ?    6.4   0.0     0.021        11      69     121 ..     179     231 ..     170     239 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
        BTAD  56 rleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrr 124
                 +++e+ l+ +++ +++e +  +++ ++   ++++a  P   +++  l  A+  +G  + A+e+Y+++ +
  CCG91975.1  65 AFQEDQLHFFTKAIQLE-QSKDWKGLVVFSKKWIATFPSEAAAYFFLGIAYENLGHYSLAIEAYKKAID 132
                 67888888888888844.55689999999***********************************99865 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0066
                 HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
        BTAD  60 lrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerl 122
                 ++ +a   l    + lG++++a +  + ++a +P   +++  l +++ ++G+ ++A+++ +++
  CCG91975.1 136 DFAKAWCNLGTCYVFLGQYAKATEAFKHALADQPNLAKAWSNLGACYIQLGQYSQAIKALKKA 198
                 55556666666667799***************************************9987765 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.021
                 HHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH CS
        BTAD  69 aeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYer 121
                  +  ++lG++++a++ l+++++++P   ++++ l  A+    +  +A+e  ++
  CCG91975.1 179 GACYIQLGQYSQAIKALKKAISLKPDLAESWCNLGIAYGERKDYHKAMESLRK 231
                 5566899******************9999999998888776666666665554 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.15        77      36      70 ..     100     134 ..      97     139 .. 0.87
   2 !   11.3   0.2    0.0003      0.16      43     149 ..     141     233 ..     134     250 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.15
    TPR_MalT  36 llariaatavlGeasllqGdleaAlqalqeaekla 70 
                 +++ +aa+++lG a+   G    A +a+++a++l 
  CCG91975.1 100 FPSEAAAYFFLGIAYENLGHYSLAIEAYKKAIDLK 134
                 567789***********************999875 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.0003
    TPR_MalT  43 tavlGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeA 141
                   +lG+ ++  G+ ++A++a++ a  la+q +  +  +++ l  +  +++ G+  +A++  ++a+ l ++  ++ ++  g+++ +       + d ++A
  CCG91975.1 141 WCNLGTCYVFLGQYAKATEAFKHA--LADQPNLAK--AWSNL--GACYIQLGQYSQAIKALKKAISLKPDLAES-WCNLGIAYGE-------RKDYHKA 225
                 5689**************999865..454555555..88877..9999999***************98887776.7777777555.......4444444 PP

    TPR_MalT 142 eqhlqeGi 149
                  + l++++
  CCG91975.1 226 MESLRKAV 233
                 44444444 PP

>> DUF3856  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0      0.02        11      82     129 ..      71     126 ..      41     136 .. 0.64
   2 ?    0.3   0.1       1.2   6.5e+02      56      82 ..     139     165 ..     129     168 .. 0.76
   3 ?    6.3   0.3     0.018       9.3      45      82 ..     158     199 ..     150     236 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
                 HHHHHHH--TTSTH...H.....HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
     DUF3856  82 lryfnrrGeleqde...G.....klWiaavfsravaleelGrkdealkafrmagem 129
                 l++f +  +leq +   G     k+Wia+  s a+a+  lG   e l ++  a e 
  CCG91975.1  71 LHFFTKAIQLEQSKdwkGlvvfsKKWIATFPSEAAAYFFLGIAYENLGHYSLAIEA 126
                 66666666666654223133333889998888888777777777777666666653 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
     DUF3856  56 lchaglsealaklgrydealesadkal 82 
                  +++ l   ++ lg+y +a e+ ++al
  CCG91975.1 139 KAWCNLGTCYVFLGQYAKATEAFKHAL 165
                 456778888888888888888888777 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.018
                 TS---HHHHH....HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
     DUF3856  45 eeafdheGfd....alchaglsealaklgrydealesadkal 82 
                  eaf h+  d    a +++ l   +++lg+y +a+++ +ka+
  CCG91975.1 158 TEAFKHALADqpnlAKAWSNLGACYIQLGQYSQAIKALKKAI 199
                 677888777755446678899999***********9999987 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.66   3.5e+02       7      19 ..      73      85 ..      61      88 .. 0.57
   2 !   13.2   1.4   0.00013     0.069       5      33 ..     105     133 ..     102     140 .. 0.85
   3 ?    2.5   0.1       0.3   1.6e+02      19      39 ..     153     166 ..     151     183 .. 0.67
   4 ?    2.1   0.0      0.38     2e+02      26      39 ..     187     200 ..     185     209 .. 0.74
   5 ?    1.6   0.4      0.56     3e+02      17      33 ..     219     235 ..     210     273 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.66
         MIT  7 lvkkAveeDnagn 19
                +++kA++++++++
  CCG91975.1 73 FFTKAIQLEQSKD 85
                4455566555555 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00013
         MIT   5 lelvkkAveeDnagnyeeAlelYkealel 33 
                  +++   + ++n g+y+ A+e+Yk+a++l
  CCG91975.1 105 AAYFFLGIAYENLGHYSLAIEAYKKAIDL 133
                 5555567899*****************97 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.3
         MIT  19 nyeeAlelYkealelLlqalk 39 
                 +       Y +a e +++al+
  CCG91975.1 153 Q-------YAKATEAFKHALA 166
                 4.......6666666666665 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.38
         MIT  26 lYkealelLlqalk 39 
                  Y++a++ L++a++
  CCG91975.1 187 QYSQAIKALKKAIS 200
                 58888888888886 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.56
         MIT  17 agnyeeAlelYkealel 33 
                 +++y +A+e  ++a+el
  CCG91975.1 219 RKDYHKAMESLRKAVEL 235
                 56666776666666665 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2     0.039        21      30      64 ..     132     166 ..     122     171 .. 0.85
   2 !    9.5   0.6    0.0014      0.74      35     105 ..     171     235 ..     166     270 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.039
                 T-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCC CS
        RPN7  30 lgkeeirrakldlaehYlkigdleeAlkaysrire 64 
                   k + ++a+ +l+  Y+  g++++A +a++ ++ 
  CCG91975.1 132 DLKKDFAKAWCNLGTCYVFLGQYAKATEAFKHALA 166
                 5688999**********************998765 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHHHHCT-HHHHHHHHHTCCCC--SHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHCSSS- CS
        RPN7  35 irrakldlaehYlkigdleeAlkaysrireyctslkhkidmllnlirvaiffndwdlvskylekakellek 105
                  ++a+ +l+  Y++ g++++A+ka++++       + k d+  ++  ++i++++ + + k +e +++ +e 
  CCG91975.1 171 LAKAWSNLGACYIQLGQYSQAIKALKKA------ISLKPDLAESWCNLGIAYGERKDYHKAMESLRKAVEL 235
                 578999*******************998......4556788888999999998888888888888777766 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.7     0.098        52       5      26 ..     108     129 ..     105     140 .. 0.83
   2 ?    2.6   0.0      0.28   1.5e+02      14      33 ..     151     170 ..     144     176 .. 0.88
   3 ?    5.3   0.0     0.038        20      10      33 ..     181     204 ..     177     207 .. 0.86
   4 ?    4.6   0.1     0.066        35       7      37 ..     212     242 ..     211     253 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.098
                 HHHHHHHHHHT-HHHHHHHHHH CS
  Fis1_TPR_C   5 YylAlGhyklgeYseArryvda 26 
                 ++l +++  lg Ys A +  + 
  CCG91975.1 108 FFLGIAYENLGHYSLAIEAYKK 129
                 89************99887665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.28
                 HT-HHHHHHHHHHHHHHTTS CS
  Fis1_TPR_C  14 lgeYseArryvdalLeiEPe 33 
                 lg+Y +A +  +  L+ +P+
  CCG91975.1 151 LGQYAKATEAFKHALADQPN 170
                 89*************99998 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.038
                 HHHHHT-HHHHHHHHHHHHHHTTS CS
  Fis1_TPR_C  10 GhyklgeYseArryvdalLeiEPe 33 
                  ++ lg+Ys+A + ++  +++ P+
  CCG91975.1 181 CYIQLGQYSQAIKALKKAISLKPD 204
                 5789************99999987 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.066
                 HHHHHHHHT-HHHHHHHHHHHHHHTTS-HHH CS
  Fis1_TPR_C   7 lAlGhyklgeYseArryvdalLeiEPenrQa 37 
                 l +++   ++Y +A++ ++   e+ P+ + a
  CCG91975.1 212 LGIAYGERKDYHKAMESLRKAVELRPNYMEA 242
                 678888889*****************99877 PP

>> DUF627  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2     0.078        41      58     105 ..     119     166 ..     116     168 .. 0.88
   2 ?    9.1   0.0    0.0024       1.2      61     104 ..     190     233 ..     183     260 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.078
      DUF627  58 yllasvecfseavelsrfyArsLfelasqlgsklyYkkavkkakraLs 105
                 +   ++e++++a  l++  A+  ++l+  +    +Y ka +  k aL+
  CCG91975.1 119 HYSLAIEAYKKAIDLKKDFAKAWCNLGTCYVFLGQYAKATEAFKHALA 166
                 55679***********************99999999999999888885 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0024
      DUF627  61 asvecfseavelsrfyArsLfelasqlgsklyYkkavkkakraL 104
                  +++++++a +l+   A+s ++l+  +g +++Y ka+++ ++a+
  CCG91975.1 190 QAIKALKKAISLKPDLAESWCNLGIAYGERKDYHKAMESLRKAV 233
                 58999*******************************99877765 PP

>> DUF5112  Domain of unknown function (DUF5112)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.4    0.0039       2.1      13      65 ..     114     165 ..     106     174 .. 0.88
   2 ?    6.0   0.1     0.014       7.5      22      73 ..     190     241 ..     181     275 .] 0.76

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0039
     DUF5112  13 YknldstklaAekalklaegysagkaeAlNnlaFvaiarmdyeeaekllkeve 65 
                 Y nl   + +A +a+k a + ++  a+A  nl+ + +   +y++a++ +k++ 
  CCG91975.1 114 YENLG-HYSLAIEAYKKAIDLKKDFAKAWCNLGTCYVFLGQYAKATEAFKHAL 165
                 66665.467899***********************************999875 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.014
     DUF5112  22 aAekalklaegysagkaeAlNnlaFvaiarmdyeeaekllkeveektdneie 73 
                  A kalk a + +   ae   nl+     r dy++a + l+++ e   n +e
  CCG91975.1 190 QAIKALKKAISLKPDLAESWCNLGIAYGERKDYHKAMESLRKAVELRPNYME 241
                 6778888888888888888888888888888888888888888877777666 PP

>> Coatomer_E  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0016      0.83     209     255 ..     146     192 ..     125     208 .. 0.85
   2 ?    2.8   0.0      0.12        63     215     245 ..     220     250 ..     210     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0016
                 HHHHHTT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT--HHHH CS
  Coatomer_E 209 vvslllgryeeAeslLkeaLdkdakdeetLiNlvvaaqhlgkdaevs 255
                  + + lg+y++A +  k aL  +++ + + +Nl  +  +lg+ ++++
  CCG91975.1 146 TCYVFLGQYAKATEAFKHALADQPNLAKAWSNLGACYIQLGQYSQAI 192
                 5788899*****************************99999985443 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.12
                 T-HHHHHHHHHHHHHH-TT-HHHHHHHHHHH CS
  Coatomer_E 215 gryeeAeslLkeaLdkdakdeetLiNlvvaa 245
                 ++y +A ++L++a +  +++ e+  Nl    
  CCG91975.1 220 KDYHKAMESLRKAVELRPNYMEAWWNLAKIY 250
                 6899*******************99996544 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       4.9   2.6e+03      16      50 ..      98     132 ..      94     142 .. 0.73
   2 ?   10.2   0.2    0.0014      0.75       6      50 ..     156     200 ..     151     208 .. 0.89
   3 ?    8.3   0.1    0.0054       2.9       6      55 ..     190     239 ..     189     261 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 4.9
      TPR_20  16 aanpddldarldlAlallaagryeeAleqLleilk 50 
                 a+ p++ +a + l  a+   g+y  A+e+  + + 
  CCG91975.1  98 ATFPSEAAAYFFLGIAYENLGHYSLAIEAYKKAID 132
                 66688888888888888888999888887555555 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0014
      TPR_20   6 pelaeleaalaanpddldarldlAlallaagryeeAleqLleilk 50 
                 + +++++ ala++p+  +a  +l   +++ g+y +A+++L + ++
  CCG91975.1 156 KATEAFKHALADQPNLAKAWSNLGACYIQLGQYSQAIKALKKAIS 200
                 678999*********************************987765 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0054
      TPR_20   6 pelaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkw 55 
                 + +++l++a+  +pd  +  ++l  a+ ++++y +A+e L + ++   ++
  CCG91975.1 190 QAIKALKKAISLKPDLAESWCNLGIAYGERKDYHKAMESLRKAVELRPNY 239
                 57899***********************************9988766655 PP

>> Ribosomal_S16  Ribosomal protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0061       3.2      26      58 ..     114     145 ..     111     147 .. 0.80
   2 ?   -2.3   0.0       9.4     5e+03      49      59 ..     170     180 ..     151     182 .. 0.67
   3 ?    2.5   0.0      0.28   1.5e+02      28      58 ..     184     213 ..     172     215 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0061
                    SEEEEEEETTTTSSTS.SEEE-HHHHHHHHHTT CS
  Ribosomal_S16  26 iEklGtYdPlakkkekkevelneerikyWlgvG 58 
                     E+lG+Y    +  +k  + l+++ +k W + G
     CCG91975.1 114 YENLGHYSLAIEAYKK-AIDLKKDFAKAWCNLG 145
                    69******84444443.5************998 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 9.4
                    HHHHHHHHTTE CS
  Ribosomal_S16  49 erikyWlgvGA 59 
                    + +k W + GA
     CCG91975.1 170 NLAKAWSNLGA 180
                    56788999998 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.28
                    EEEEEETTTTSSTS.SEEE-HHHHHHHHHTT CS
  Ribosomal_S16  28 klGtYdPlakkkekkevelneerikyWlgvG 58 
                    +lG Y    k  +k  ++l+ + ++ W + G
     CCG91975.1 184 QLGQYSQAIKALKK-AISLKPDLAESWCNLG 213
                    79999994444444.5***********9988 PP

>> DUF5113  Domain of unknown function (DUF5113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.72   3.8e+02      12      36 ..     108     132 ..     100     142 .. 0.59
   2 ?    2.8   0.0      0.18        94       7      35 ..     137     165 ..     132     167 .. 0.90
   3 ?    6.0   0.1     0.018       9.6       7      36 ..     171     200 ..     166     202 .. 0.91
   4 ?    4.7   0.1     0.046        24       7      50 ..     205     248 ..     203     274 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.72
     DUF5113  12 anlayylnvegeyeeALeyldsale 36 
                   l+ ++   g+y+ A+e  ++a++
  CCG91975.1 108 FFLGIAYENLGHYSLAIEAYKKAID 132
                 5555555555555555555555554 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.18
     DUF5113   7 iandYanlayylnvegeyeeALeyldsal 35 
                  a+++ nl++++ + g+y +A e +++al
  CCG91975.1 137 FAKAWCNLGTCYVFLGQYAKATEAFKHAL 165
                 688999******************99998 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.018
     DUF5113   7 iandYanlayylnvegeyeeALeyldsale 36 
                  a+++ nl+ ++   g+y++A++ l++a++
  CCG91975.1 171 LAKAWSNLGACYIQLGQYSQAIKALKKAIS 200
                 689999**********************96 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.046
     DUF5113   7 iandYanlayylnvegeyeeALeyldsaleylNahyekYakkka 50 
                  a+ + nl+ ++  +++y++A+e l++a+e+  ++ e + + ++
  CCG91975.1 205 LAESWCNLGIAYGERKDYHKAMESLRKAVELRPNYMEAWWNLAK 248
                 58889999*********************987777777665543 PP

>> DUF3829  Protein of unknown function (DUF3829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.37   1.9e+02     183     209 ..     173     199 ..     148     208 .. 0.52
   2 ?   11.6   1.6   0.00027      0.14      95     150 ..     215     272 ..     212     275 .] 0.91

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.37
     DUF3829 183 kneldlaklkkklddlekaleklekas 209
                 k+  +l + + +l ++++a+++l+ka+
  CCG91975.1 173 KAWSNLGACYIQLGQYSQAIKALKKAI 199
                 333444444445555555555544443 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00027
     DUF3829  95 aYYkqkdYkd..Ddfakgkelhaklltaykafasaskafsaalekvsderekeeleki 150
                 aY ++kdY +  + + k+ el + +++a+ ++a+++++ ++ +ekv+ e++ +e++  
  CCG91975.1 215 AYGERKDYHKamESLRKAVELRPNYMEAWWNLAKIYEKTKNLVEKVKAEQKIKEIAHQ 272
                 7999****98567899**********************************99998765 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1         2     1e+03       1      17 [.     104     120 ..     104     124 .. 0.85
   2 ?    3.3   0.0      0.31   1.7e+02       3      21 ..     140     158 ..     138     161 .. 0.86
   3 ?    2.8   0.0      0.45   2.4e+02       3      20 ..     174     191 ..     172     192 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 2
       TPR_4   1 arallaLArallalGdl 17 
                 a+a+ +L+ a+  lG++
  CCG91975.1 104 AAAYFFLGIAYENLGHY 120
                 679999****9999975 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.31
       TPR_4   3 allaLArallalGdldeAr 21 
                 a  +L+  +  lG+++ A 
  CCG91975.1 140 AWCNLGTCYVFLGQYAKAT 158
                 6789************996 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.45
       TPR_4   3 allaLArallalGdldeA 20 
                 a ++L+  + +lG++ +A
  CCG91975.1 174 AWSNLGACYIQLGQYSQA 191
                 789***********9887 PP

>> SRP_TPR_like  Putative TPR-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   2.2     0.019        10      22      41 ..     180     199 ..     107     231 .. 0.58
   2 ?    7.5   2.6    0.0073       3.9      23      81 ..     181     270 ..     166     274 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.019
  SRP_TPR_like  22 valiklekyeeaLkllkkgs 41 
                    ++i+l++y++a+k+lkk+ 
    CCG91975.1 180 ACYIQLGQYSQAIKALKKAI 199
                   35555555555555555544 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0073
  SRP_TPR_like  23 aliklekyeeaLkllkkgs............................alsedvrfEkaYvl..Yklkk.ykkalkilkkveaeekvkvlk 81 
                   ++i+l++y++a+k+lkk+                             +l + v+    Y++  + l k y+k+ ++++kv+ae+k+k+++
    CCG91975.1 181 CYIQLGQYSQAIKALKKAIslkpdlaeswcnlgiaygerkdyhkameSLRKAVELRPNYMEawWNLAKiYEKTKNLVEKVKAEQKIKEIA 270
                   9****************9867777666666666666666666666664555555555553211444433666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.52
# Mc/sec: 1587.54
//
Query:       CCG91976.1  [L=86]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 616.88
//
Query:       CCG91977.1  [L=174]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-33  115.7   0.0    2.5e-33  115.3   0.0    1.1  1  DUF488        Protein of unknown function, DUF488
      0.004   16.4   0.0     0.0049   16.1   0.0    1.2  1  DUF692        Protein of unknown function (DUF692)
  ------ inclusion threshold ------
      0.089   13.2   0.1       0.18   12.2   0.0    1.5  2  Phage_TAC_12  Phage tail assembly chaperone protein, TAC


Domain annotation for each model (and alignments):
>> DUF488  Protein of unknown function, DUF488
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.0   4.1e-37   2.5e-33       1     122 []      12     134 ..      12     134 .. 0.97

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 4.1e-37
      DUF488   1 slervydllkkdgvrvlvDVRlwPrSr.npgfskealkedlkeagiaYvwlkelgpsrelrkwfkhdprweefferYaaeleskeaakealeelkelak 98 
                 sle+++ +lk+++v+ l+DVR+ PrSr np+f+ke+++e+l++++i Y++l+e g+ r+ +k+ +++  ++e+f+ +a+++++ +++++al++++e  k
  CCG91977.1  12 SLEELISMLKEANVEALIDVRSIPRSRhNPQFNKETIAEALSKESILYIHLPEAGGLRHPKKDSPNKGWKNESFRGFADYMAT-ANFAAALDKIIEIGK 109
                 5899*************************************************************66679*************.99************* PP

      DUF488  99 kg.vaLlcaekdperchrvvlaeyl 122
                 ++  aL+cae  p+rchr+++a++l
  CCG91977.1 110 EKsAALMCAETLPWRCHRSLIADAL 134
                 **********************986 PP

>> DUF692  Protein of unknown function (DUF692)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   8.1e-07    0.0049     154     202 ..      17      67 ..       6     106 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.1e-07
      DUF692 154 aelvertgcglllDvnNvyvnavNhgfdpeayldalplervaeiHl..AGh 202
                  +++++++++ l+Dv  +  + +N +f+ e++ +al  e++ +iHl  AG+
  CCG91977.1  17 ISMLKEANVEALIDVRSIPRSRHNPQFNKETIAEALSKESILYIHLpeAGG 67 
                 57899****************************************966665 PP

>> Phage_TAC_12  Phage tail assembly chaperone protein, TAC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     3e-05      0.18      39      78 ..      14      53 ..       5      58 .. 0.89
   2 ?   -3.6   0.0       2.5   1.5e+04      16      30 ..      96     110 ..      93     113 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3e-05
  Phage_TAC_12 39 sllvpgLesgdpevLvevlyaalshkkkrpsrdeieeale 78
                  + l+  L++ ++e+L++v     s++++++ +++i eal 
    CCG91977.1 14 EELISMLKEANVEALIDVRSIPRSRHNPQFNKETIAEALS 53
                  567789********************************97 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.5
  Phage_TAC_12  16 kfvreidkelglkve 30 
                    f+  +dk +++ +e
    CCG91977.1  96 NFAAALDKIIEIGKE 110
                   567777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1190.83
//
Query:       CCG91978.1  [L=474]
Description: NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-36  124.0   0.4    5.3e-36  122.8   0.1    1.7  2  Fer4_20        Dihydroprymidine dehydrogenase domain II, 4Fe-
    7.9e-36  123.8   0.0      1e-35  123.4   0.0    1.1  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    5.7e-14   52.1   0.2    9.6e-06   25.1   0.2    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.3e-09   38.5   5.5     0.0002   21.9   0.2    3.9  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    5.4e-08   33.0   0.0    1.1e-07   31.9   0.0    1.5  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      8e-07   28.6   0.2    1.2e-06   28.0   0.2    1.2  1  FAD_binding_3  FAD binding domain
      8e-06   25.3   0.0    0.00014   21.2   0.0    2.3  2  Thi4           Thi4 family
    4.7e-05   22.6   0.4      9e-05   21.7   0.4    1.4  1  FAD_binding_2  FAD binding domain
    5.1e-05   23.0   0.3    0.00028   20.6   0.3    2.0  2  DAO            FAD dependent oxidoreductase
    7.1e-05   22.3   0.0    0.00015   21.3   0.0    1.5  1  FAD_oxidored   FAD dependent oxidoreductase
    7.2e-05   21.7   0.9    0.00014   20.7   0.3    1.7  2  HI0933_like    HI0933-like protein
     0.0003   20.3   0.0      0.066   12.6   0.0    2.3  2  PALP           Pyridoxal-phosphate dependent enzyme
      0.001   17.6   0.0       0.71    8.2   0.0    2.1  2  FMO-like       Flavin-binding monooxygenase-like
     0.0055   15.8   0.0     0.0093   15.1   0.0    1.4  1  GIDA           Glucose inhibited division protein A
  ------ inclusion threshold ------
      0.011   15.1   0.0       0.33   10.3   0.0    2.3  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      0.024   13.7   0.4       0.04   13.0   0.4    1.3  1  Lycopene_cycl  Lycopene cyclase protein
      0.025   13.9   0.0      0.086   12.1   0.0    1.8  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.025   15.1   2.9      0.096   13.3   0.3    2.6  2  Fer4_7         4Fe-4S dicluster domain
      0.027   14.0   0.0        4.2    6.9   0.0    2.2  2  DUF4147        Domain of unknown function (DUF4147)
      0.034   13.3   0.0        6.9    5.7   0.0    2.3  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
       0.04   13.8   0.0        2.1    8.2   0.0    2.2  2  YjeF_N         YjeF-related protein N-terminus
       0.09   12.8   0.3         12    6.0   0.1    2.5  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
       0.17   12.0   1.5       0.37   10.9   1.5    1.5  1  Fer4_11        4Fe-4S dicluster domain
       0.18   11.0   0.0       0.37   10.0   0.0    1.5  1  Amino_oxidase  Flavin containing amine oxidoreductase
        1.2    9.4   5.0        1.5    9.0   1.0    2.0  2  Fer4_9         4Fe-4S dicluster domain
        4.9    7.3   8.1         28    4.9   8.2    2.2  2  Fer4_10        4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   0.1   7.7e-39   5.3e-36       6     111 ..      50     155 ..      44     157 .. 0.94
   2 ?   -3.0   0.0       8.8   6.1e+03      60      79 ..     363     382 ..     354     384 .. 0.74

  Alignments for each domain:
  == domain 1  score: 122.8 bits;  conditional E-value: 7.7e-39
                 S-SB----HHHHHHHHTT----TT-HHHHCSTT---HHHHHHHHHTT-HHHHHHHHHHH-S-HHHHHHHS-GGGTGCCS-GGGTTB.----HHHHHHHH CS
     Fer4_20   6 kevalglteeealeeAsRClqCkkapcvkgCPveidipefikkiaegnleeaakiiketnslpavcgrvCpqeelCegaCvlekkgkepvaigklerfv 104
                 ke  l l+ ++a+ eAsRCl+C ++pcv++CP+ i+ip+f+k+i++g++++aa++i ++n l+ +cgrvCp eelCegaCvl+k +k +v+ig+l+rf+
  CCG91978.1  50 KESLLPLSLNAAIGEASRCLYCWNPPCVNACPTGIEIPKFVKRIETGDIRGAAEVILKANFLGGTCGRVCPVEELCEGACVLTKLKKPSVSIGRLQRFA 148
                 67777888999***********************************************************************999989*********** PP

                 HHHHHHT CS
     Fer4_20 105 adaaree 111
                 +d++ ++
  CCG91978.1 149 IDYFWAM 155
                 **99876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.8
                 HHHHH-S-HHHHHHHS-GGG CS
     Fer4_20  60 iiketnslpavcgrvCpqee 79 
                 i+ke++ ++  c rv p+++
  CCG91978.1 363 IVKENKLVGLKCQRVNPHSS 382
                 55666667888999999875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.0   1.5e-38     1e-35       1     294 []     170     462 ..     170     462 .. 0.80

  Alignments for each domain:
  == domain 1  score: 123.4 bits;  conditional E-value: 1.5e-38
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias...evvkklnqgielllgeevvkidpgkkkvklekkkegde 95 
                  k+v+++G+GpAGl++a tlaq g++ +++ +++ +++g  l ++++ +++e+ e+ +   e+vkkl+  i++ ++        gk ++ le+      
   CCG91978.1 170 KKVAIVGSGPAGLSCAATLAQLGIEAVIL-EKNRLPGG--LSTYVIPSFREPIEVSLkevEEVKKLGVTIHTEKE-------LGK-DFSLEE------ 250
                  58***********************9999.56656665..7779**********999555444444444444333.......555.777754...... PP

                  EEEEESEEEE---.EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.......SEEEEES-SHHHHHHHHHHHHHT-E.EEEEESSSSSS..TTS- CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx..xxxx RF
  Pyr_redox_2  96 ekiaydklvlAtG.ssprdlgipGvaenvgklvrtldsaealklkllp.......krivvvGgGyiGvElAaalaklgke.vtlveardrll..rald 182
                   + ayd+++lA+G +++  l+ipG+   +     +lds e l++ +l+       ++iv++G G++++++A +++k++ke v ++++ +r+   ra++
   CCG91978.1 251 LRTAYDAVFLAIGlGQSPQLQIPGE---A----YILDSLEFLSRTKLEpwslpdaNNIVIIGLGNTAIDCALVAKKIAKEkVSILYR-KRFEesRAYP 340
                  568**********8799999*****...2....35788888888777778888************************9997888877.666669**** PP

                  HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.........EEE.EEETTSCE.....EEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSB CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxx.xxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 183 kelsaaleealekeGvevklgtsvkeidgnge.........kle.vvledgee.....idadlvvvavGvrpstelleeklglelderggivvdeflr 265
                  ke+++ l+ea+  +  +++ ++ vke +  g          +l+ v+ +++       ++a+lv+ a G +     + +++ +el ++g+i+v+e+++
   CCG91978.1 341 KEIEKVLKEAVPIQSLAIVKEAIVKENKLVGLkcqrvnphsSLHsVEKKEQ-NgieffLPAELVIRASGQQKPL-WI-KTMAIEL-DNGFIKVNEKYE 434
                  ******999999999999988888844433335577777664443333333.3477*************99875.44.9******.************ PP

                  ESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 266 tnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  t+vp +ya GD++ +k+g+ ++++Av+ G
   CCG91978.1 435 TSVPRVYAGGDCI-RKKGMFSTVHAVEDG 462
                  *************.999999999999876 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.2   1.4e-08   9.6e-06       2      33 ..     174     204 ..     173     214 .. 0.86
   2 !   24.9   0.0   1.6e-08   1.1e-05     112     305 .]     244     444 ..     217     444 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.4e-08
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkgnig 33 
                  I+G GPaGl++a +l ++g+e  +ilEk+++ 
   CCG91978.1 174 IVGSGPAGLSCAATLAQLGIE-AVILEKNRLP 204
                  9*******************5.78****9875 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 1.6e-08
  Pyr_redox_3 112 egfevetsketyeAkkviiAtGefdkPnklnipGeek.....lvkhyskvkefhkyagqkvvViGgknSavDaAlelvrk.gaeVtvvtrgseiekee 203
                  + f++e  +  y A  v++A+G  + P++ +ipGe             k + ++    +++v+iG +n+a+D Al   +    +V++++r+   e++ 
   CCG91978.1 244 KDFSLEELRTAYDA--VFLAIGLGQSPQL-QIPGEAYildslEFLSRTKLEPWSLPDANNIVIIGLGNTAIDCALVAKKIaKEKVSILYRKRFEESRA 338
                  45666666666666..6677777679985.9****8422221233556678999999*****************9887754789******98655543 PP

  Pyr_redox_3 204 ..sdpsyslkpdienrleelvke....ekikvlfnaevkeikekeeeykvk..tedgkkvev.kddvvlatGykpdlsflkkslfeldedgrpvltee 292
                    ++++  lk  +  +  ++vke    e  + l   + ++++ +++ + v+  +++g ++    + v+ a G +  l  +k + +el ++g+++++e+
   CCG91978.1 339 ypKEIEKVLKEAVPIQSLAIVKEaivkE--NKLVGLKCQRVNPHSSLHSVEkkEQNGIEFFLpAELVIRASGQQKPL-WIKTMAIEL-DNGFIKVNEK 432
                  2233344444433322223333333212..23334466777776666666511555555555344455567777766.566588888.8999999976 PP

  Pyr_redox_3 293 teetnvpglflaG 305
                    et vp ++  G
   CCG91978.1 433 -YETSVPRVYAGG 444
                  .57889*999766 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.0   3.8e-05     0.026       1      60 [.     171     239 ..     171     244 .. 0.64
   2 !   21.9   0.2   2.8e-07    0.0002       1      65 [.     300     366 ..     300     378 .. 0.85
   3 ?   -1.4   0.0       5.3   3.7e+03      48      62 ..     387     401 ..     372     404 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.8e-05
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.......TTSSHHHHHHH..HHHHHHTTEEEECS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.......rllDeeaskil..qeklekngievlln 60 
                 kv++vG+G  gl +A++la+lg +  ++e +  +        + + e ++  l   e+++k+g++++++
  CCG91978.1 171 KVAIVGSGPAGLSCAATLAQLGIEAVILEKNRLPGglstyviPSFREPIEVSLkeVEEVKKLGVTIHTE 239
                 79********************99999998766652221112333333333332245555556666665 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 2.8e-07
                 EEEEECSSHHHHHHHHHHHHTTS.EEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgk.kVtvversdkll.rllDeeaskilqeklekngievllntkvee 65 
                 ++v++G G++++++A ++++++k kV+++ r+     r++++e++k+l+e +  +   ++ ++ v+e
  CCG91978.1 300 NIVIIGLGNTAIDCALVAKKIAKeKVSILYRKRFEEsRAYPKEIEKVLKEAVPIQSLAIVKEAIVKE 366
                 59******************99748888888865559************999888888888877776 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 5.3
                 HHHHHTTEEEECSEE CS
   Pyr_redox  48 eklekngievllntk 62 
                 ek e+ngie+ l ++
  CCG91978.1 387 EKKEQNGIEFFLPAE 401
                 677899**9998776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   1.6e-10   1.1e-07       1      36 [.     174     209 ..     174     223 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 1.6e-10
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36 
                    IvG+G +Gl++A++La+ g++ ++lek++ +GG ++
     CCG91978.1 174 IVGSGPAGLSCAATLAQLGIEAVILEKNRLPGGLST 209
                    9***************************99999654 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.2   1.8e-09   1.2e-06       3      34 ..     171     202 ..     169     206 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.8e-09
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    +V+IVG+GpaGl+ a  L++ G++ v++ek +
     CCG91978.1 171 KVAIVGSGPAGLSCAATLAQLGIEAVILEKNR 202
                    79***************************975 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     2e-07   0.00014      17      55 ..     169     206 ..     157     217 .. 0.91
   2 ?    1.1   0.0      0.27   1.9e+02      18      49 ..     299     330 ..     285     332 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2e-07
                 EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T CS
        Thi4  17 esDvvivGaGssGLtaayylakkpdlkvailersvspGG 55 
                 +  v+ivG+G++GL++a +la+  +++ +ile++  pGG
  CCG91978.1 169 KKKVAIVGSGPAGLSCAATLAQL-GIEAVILEKNRLPGG 206
                 5689******************9.*********999998 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.27
                 EEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4  18 sDvvivGaGssGLtaayylakkpdlkvailer 49 
                  ++vi+G G + + +a +  k  + kv il r
  CCG91978.1 299 NNIVIIGLGNTAIDCALVAKKIAKEKVSILYR 330
                 689***********997644446778888865 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.4   1.3e-07     9e-05       2      33 ..     172     203 ..     171     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.3e-07
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqe 33 
                    v ++GsG AGL++A+++a+ G + +++ek   
     CCG91978.1 172 VAIVGSGPAGLSCAATLAQLGIEAVILEKNRL 203
                    89**************************9765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.3     4e-07   0.00028       1      35 [.     171     206 ..     171     211 .. 0.92
   2 ?   -0.5   0.0       1.1   7.3e+02     155     223 ..     228     275 ..     218     353 .. 0.61

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4e-07
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsg 35 
                 +v+i+G+G +Gls+A  La+ g   ++lek++ +g g
  CCG91978.1 171 KVAIVGSGPAGLSCAATLAQLGieAVILEKNRLPG-G 206
                 59*****************************9999.6 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
                 HHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEE.EEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEE CS
         DAO 155 aaealGveilegtevtgleeedgkvwgverttpgen.daadavVnaaGawsdllgllkeldlpispvrgq 223
                 ++++lGv+i+++ e  +          +     +e  +a+dav +a G++  ++   ++l     ++ g+
  CCG91978.1 228 EVKKLGVTIHTEKELGK-------DFSL-----EELrTAYDAVFLAIGLG--QS---PQL-----QIPGE 275
                 44555555555533222.......2223.....11213678899999877..44...333.....23333 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.1e-07   0.00015       2      40 ..     172     210 ..     171     220 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.1e-07
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllts 40 
                   v +vG+gpaG+ +A + a+ G + +++e+++  GGl+t 
    CCG91978.1 172 VAIVGSGPAGLSCAATLAQLGIEAVILEKNRLPGGLSTY 210
                   89**********************************996 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.3     2e-07   0.00014       2      36 ..     171     205 ..     170     206 .. 0.93
   2 ?   -2.0   0.0       1.6   1.1e+03       2      29 ..     300     328 ..     299     332 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2e-07
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36 
                  +v+++G G+AGl +A+++a+ g + ++lek++ +g
   CCG91978.1 171 KVAIVGSGPAGLSCAATLAQLGIEAVILEKNRLPG 205
                  79****************************98665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
                  SEEEE--SHHHHHHHHHHHH.TT--EEEE CS
  HI0933_like   2 dviviGgGaAGlmaAisaak.rgkrVlll 29 
                  ++++iG G   + +A+ a+k ++++V +l
   CCG91978.1 300 NIVIIGLGNTAIDCALVAKKiAKEKVSIL 328
                  689*************9955266677766 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   9.6e-05     0.066      49      85 ..     163     203 ..     148     247 .. 0.77
   2 ?    5.1   0.0     0.018        13      54      90 ..     297     334 ..     279     348 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.6e-05
                 HHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEE....E CS
        PALP  49 lkegtgaktvveassGNhgralAaaaallGlkvtiv....v 85 
                 + +++++k v+  +sG +g+++Aa  a lG++++i+    +
  CCG91978.1 163 HIQTQKKKKVAIVGSGPAGLSCAATLAQLGIEAVILeknrL 203
                 5555799***************************9855553 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.018
                 TTSEEEEEBSSHHHHHHHHHHHHH.T-EEEEEEETTS- CS
        PALP  54 gaktvveassGNhgralAaaaall.Glkvtivvpadas 90 
                 +a ++v  + GN+++ +A++a+++ + kv i+  +   
  CCG91978.1 297 DANNIVIIGLGNTAIDCALVAKKIaKEKVSILYRKRFE 334
                 678899999*************9989999998776655 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0     0.001      0.71       1      40 [.     169     208 ..     169     216 .. 0.93
   2 !    7.2   0.0    0.0021       1.4     139     208 ..     255     323 ..     237     334 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.001
    FMO-like   1 akkvaviGaGvsGlasikccleegleptcfersddiGGlw 40 
                 +kkva++G+G +Gl+   +  + g+e + +e+    GGl 
  CCG91978.1 169 KKKVAIVGSGPAGLSCAATLAQLGIEAVILEKNRLPGGLS 208
                 69******************************99999985 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0021
    FMO-like 139 fdavmvctGhhvnphlplesfpGiek.fkGqyfhsrdykepevfkg.krvlviGlGnsggdiavelsrtaeq 208
                 +dav +  G    p+l     pG    +    f sr   ep  + +   +++iGlGn++ d a  + + a++
  CCG91978.1 255 YDAVFLAIGLGQSPQLQ---IPGEAYiLDSLEFLSRTKLEPWSLPDaNNIVIIGLGNTAIDCALVAKKIAKE 323
                 56666666655555443...344332034445778888888776542689*************999888864 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.4e-05    0.0093       1      47 [.     171     218 ..     171     241 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.4e-05
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE.ES-GGGTT--SSSSEEE-T CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi.thkldtiaelsCnpsiggi 47 
                 +v ++G G AG+ +A+++a+lG++ +++  ++l   ++    ps++ +
  CCG91978.1 171 KVAIVGSGPAGLSCAATLAQLGIEAVILeKNRLPGGLSTYVIPSFREP 218
                 699********************9888833333333344455666655 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00048      0.33      26      69 ..     159     202 ..     141     217 .. 0.85
   2 ?    2.1   0.0      0.15   1.1e+02      37      92 ..     299     350 ..     286     363 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00048
                   TCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSH CS
  2-Hacid_dh_C  26 ekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrsk 69 
                   +++ ++++ ++k+v+i+G G  G + a +l+++g++ ++ ++++
    CCG91978.1 159 PSQWHIQTQKKKKVAIVGSGPAGLSCAATLAQLGIEAVILEKNR 202
                   5677888999*************************988877665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.15
                   SEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTCEECSHHHHHHH- CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgvelvsleellaes 92 
                     + iiGlG+ +   a ++k++   kv +  r++ +     e +++  ++e++l+e+
    CCG91978.1 299 NNIVIIGLGNTAIDCALVAKKIAKeKVSILYRKRFE-----ESRAYPKEIEKVLKEA 350
                   5689*******9887777775443244444343222.....2233455666666665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   5.8e-05      0.04       2      32 ..     172     200 ..     171     212 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.8e-05
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvliea 32 
                    v+++G+GpAgls Aa l  a+ g++ v++e 
     CCG91978.1 172 VAIVGSGPAGLSCAATL--AQLGIEAVILEK 200
                    89***************..*******99986 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012     0.086      27      60 ..     168     201 ..     159     232 .. 0.91
   2 ?   -1.5   0.0       1.9   1.3e+03      30      53 ..     300     323 ..     296     370 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
                  ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESS CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakglgakVtvlDvr 60 
                  ++ kv ++G G aGl+ +at ++lg + ++l+++
   CCG91978.1 168 KKKKVAIVGSGPAGLSCAATLAQLGIEAVILEKN 201
                  6789***********************9999987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.9
                  EEEEESTSHHHHHHHHHHHHTT-E CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgak 53 
                  ++++iG G   +  + +ak++  +
   CCG91978.1 300 NIVIIGLGNTAIDCALVAKKIAKE 323
                  688899888888888888877543 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   0.00014     0.096      33      52 .]      63      84 ..      24      84 .. 0.78
   2 ?    1.3   0.2      0.76   5.2e+02      43      50 ..     114     121 ..     110     151 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00014
      Fer4_7 33 idpekClgCga..CvavCPtga 52
                +++++Cl+C +  Cv++CPtg+
  CCG91978.1 63 GEASRCLYCWNppCVNACPTGI 84
                46899****9999*******96 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.76
      Fer4_7  43 aCvavCPt 50 
                  C +vCP+
  CCG91978.1 114 TCGRVCPV 121
                 45555554 PP

>> DUF4147  Domain of unknown function (DUF4147)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.006       4.2      28      66 ..     161     198 ..     130     235 .. 0.76
   2 ?    4.9   0.0     0.023        16      29      67 ..     292     330 ..     271     365 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.006
                 -........-SEEEEEESTTHHHHHHHHH.HHHGEEEEEE CS
     DUF4147  28 e.eldlskkkrvvvvgaGKAaaamaaaleeealksgvvvv 66 
                 + +++++kkk+v +vg G A ++ aa+l+  +l+   v+ 
  CCG91978.1 161 QwHIQTQKKKKVAIVGSGPAGLSCAATLA--QLGIEAVIL 198
                 14788899*****************9999..455444444 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.023
                 .......-SEEEEEESTTHHHHHHHHH.HHHGEEEEEE.E CS
     DUF4147  29 eldlskkkrvvvvgaGKAaaamaaaleeealksgvvvv.k 67 
                  ++l + +++v++g+G+ a+  a +++ ++ k++v +  +
  CCG91978.1 292 PWSLPDANNIVIIGLGNTAIDCALVAK-KIAKEKVSILyR 330
                 4677899****************8888.444444433323 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.016        11       5      34 ..     172     199 ..     157     203 .. 0.63
   2 ?    5.7   0.0    0.0099       6.9     143     226 ..     251     332 ..     221     350 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.016
  K_oxygenase   5 ligiGiGpsnLsLailleevkkelkalfle 34 
                  ++++G Gp+ Ls a++l++    ++a+ le
   CCG91978.1 172 VAIVGSGPAGLSCAATLAQLG--IEAVILE 199
                  456666666666666666665..5555555 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0099
  K_oxygenase 143 eeeelearnlvlgvGtepkiPevleklegkervvHsseylerkee....llakkriaVvGsGqSaaeifedllrrqkkvelklvtrse 226
                   ++ + a  l +g G++p++      + g++ ++ s e+l+r++     l ++++i+++G G +a + +  ++++ +k +++++ r++
   CCG91978.1 251 LRTAYDAVFLAIGLGQSPQLQ-----IPGEAYILDSLEFLSRTKLepwsLPDANNIVIIGLGNTAIDCAL-VAKKIAKEKVSILYRKR 332
                  456788888999999998752.....2333444555555555544455489999**********998765.44556667788777765 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0     0.003       2.1      30      94 ..     172     245 ..     144     282 .. 0.75
   2 ?    3.5   0.0     0.085        58      22      70 ..     293     342 ..     275     370 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.003
      YjeF_N  30 lvlvGsgnnGgdglaaArhLaqegak.Vtv...........llleeeekldedaeralellkkaggkvveekpeedl 94 
                 + +vG   +G  gl +A+ Laq g++ V++           +++ + ++  e+  +++e++kk+g+++++ek+  ++
  CCG91978.1 172 VAIVG---SGPAGLSCAATLAQLGIEaVILeknrlpgglstYVIPSFREPIEVSLKEVEEVKKLGVTIHTEKELGKD 245
                 44444...58999*************666599999999888778787788888889999999999999988776554 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.085
      YjeF_N  22 nspaekkvlvlvGsgnnGgdglaaArhLaqegakVtv.llleeeeklded 70 
                 +s ++++ +v++G gn+  d+  +A  +a+e++++     +ee++ ++++
  CCG91978.1 293 WSLPDANNIVIIGLGNTAIDCALVAKKIAKEKVSILYrKRFEESRAYPKE 342
                 56777888999*****************9999988773223333333333 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.017        12       8      40 ..     165     197 ..     160     203 .. 0.86
   2 ?    4.3   0.0     0.057        40      12      69 ..     298     356 ..     287     367 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.017
                   S..TT-EEEEES-SHHHHHHHHHHHCCT-CEEE CS
  Shikimate_DH   8 eslkekkvlliGaGemaelvakhLlakgvkkvv 40 
                   ++ k+kkv ++G G  +   a  L++ g+++v+
    CCG91978.1 165 QTQKKKKVAIVGSGPAGLSCAATLAQLGIEAVI 197
                   56789**********************999876 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.057
                   T-EEEEES-SHHH...HHHHHHHHCCT-CEEEEEESS.HHHHHHHHHHHT.ET-EEEEGCGH CS
  Shikimate_DH  12 ekkvlliGaGema...elvakhLlakgvkkvvvaNRt.lerakelaeelkgeeiealkleel 69 
                    +++++iG G++a    lvak+++++   kv ++ R  +e  ++  +e++++  ea+++++l
    CCG91978.1 298 ANNIVIIGLGNTAidcALVAKKIAKE---KVSILYRKrFEESRAYPKEIEKVLKEAVPIQSL 356
                   5799********93334555555554...555666652566777777777776667776666 PP

>> Fer4_11  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.5   0.00053      0.37       8      37 ..      66      99 ..      62     129 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00053
     Fer4_11  8 eqCrhCleppCvasapse....aivkdeetGaVl 37
                + C  C +ppCv+++p++     +vk+ etG + 
  CCG91978.1 66 SRCLYCWNPPCVNACPTGieipKFVKRIETGDIR 99
                68**************999999999999999765 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00054      0.37       2      29 ..     180     207 ..     179     220 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00054
                    HHHHHHHHHHHTTEEEEEEESSSSSBTT CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGR 29 
                    aGL++A +L++ G + ++lE +  +GG 
     CCG91978.1 180 AGLSCAATLAQLGIEAVILEKNRLPGGL 207
                    9**********************99995 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.0    0.0022       1.5      33      49 ..      53      83 ..      31      85 .. 0.68
   2 ?    6.6   5.6     0.013       8.8       1      47 [.      67     120 ..      67     132 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0022
      Fer4_9 33 e............eaCigCga..CveaCpkg 49
                             ++C+ C    Cv+aCp+g
  CCG91978.1 53 LlplslnaaigeaSRCLYCWNppCVNACPTG 83
                1444555555556789999999999999998 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.013
      Fer4_9   1 kCtgCga..CveaCpagvvvedaaerkarlraase...........eaCigCgaCveaCp 47 
                 +C  C +  Cv+aCp+g+ +++ ++r+   +++++             C        +Cp
  CCG91978.1  67 RCLYCWNppCVNACPTGIEIPKFVKRIETGDIRGAaevilkanflgGTC------GRVCP 120
                 599999888************9999999999888888888776655333......22222 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   8.2     0.041        28       5      56 .]      64     120 ..      60     132 .. 0.67
   2 ?    1.1   1.1      0.65   4.5e+02      13      22 ..     113     122 ..     110     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.041
     Fer4_10   5 dddtCirCg..kCvkaCPadl.........tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 ++++C+ C    Cv+aCP+ +         ++ + +g+a+ + + +   + C +      +CP
  CCG91978.1  64 EASRCLYCWnpPCVNACPTGIeipkfvkriETGDIRGAAEVILKANFLGGTCGR------VCP 120
                 6789****8789*******99999666666555556666666666655556655......333 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.65
     Fer4_10  13 gkCvkaCPad 22 
                 g+C ++CP+ 
  CCG91978.1 113 GTCGRVCPVE 122
                 7899999994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 3448.32
//
Query:       CCG91979.1  [L=446]
Description: Dihydroorotate dehydrogenase fused to Fe-S-cluster domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-33  114.3   0.0    8.5e-33  113.8   0.0    1.2  1  DHO_dh        Dihydroorotate dehydrogenase
      6e-18   64.7  11.9    1.2e-17   63.7  11.9    1.5  1  Fer4_21       4Fe-4S dicluster domain
    1.5e-07   30.9   0.0    3.4e-07   29.7   0.0    1.5  2  Dus           Dihydrouridine synthase (Dus)
    4.4e-06   27.2   9.3    8.7e-05   23.0  10.5    2.3  2  Fer4_7        4Fe-4S dicluster domain
    3.1e-05   24.1   5.8      0.076   13.2   1.9    2.5  2  Fer4_9        4Fe-4S dicluster domain
      4e-05   23.5  12.0      0.023   14.8   3.3    2.6  2  Fer4_2        4Fe-4S binding domain
    9.9e-05   22.3   2.8    9.9e-05   22.3   2.8    2.8  2  Fer4_6        4Fe-4S binding domain
    0.00022   21.2  11.4      0.017   15.3   2.0    2.5  2  Fer4_10       4Fe-4S dicluster domain
    0.00033   20.4  17.8     0.0024   17.6   3.2    2.7  2  Fer4          4Fe-4S binding domain
    0.00047   19.6   0.6    0.00094   18.7   0.4    1.6  2  NMO           Nitronate monooxygenase
    0.00087   19.8   6.9     0.0026   18.3   6.9    1.8  1  Fer4_17       4Fe-4S dicluster domain
     0.0019   17.3   0.2      0.013   14.5   0.2    2.2  1  FMN_dh        FMN-dependent dehydrogenase
      0.009   15.0   0.0       0.27   10.2   0.0    2.3  2  IMPDH         IMP dehydrogenase / GMP reductase domain
  ------ inclusion threshold ------
      0.028   14.9  14.3      0.072   13.5   3.8    2.4  2  Fer4_8        4Fe-4S dicluster domain
      0.072   14.1  17.0       0.33   12.0   6.0    2.8  2  Fer4_3        4Fe-4S binding domain
      0.073   12.2   0.0      0.073   12.2   0.0    1.7  2  Glu_synthase  Conserved region in glutamate synthase
       0.11   13.5  10.3       0.19   12.7   9.2    2.1  1  Fer4_16       4Fe-4S double cluster binding domain
       0.13   13.1   9.5       0.14   13.0   1.7    2.4  2  Fer4_22       4Fe-4S dicluster domain
       0.24   11.6   7.0        3.7    7.8   2.6    2.4  2  Fer4_18       4Fe-4S dicluster domain
        3.5    8.4  16.3        3.5    8.4   2.7    2.7  2  Fer4_4        4Fe-4S binding domain
        5.2    7.7  12.1         12    6.5   2.2    2.6  2  Fer4_13       4Fe-4S single cluster domain of Ferredoxin I


Domain annotation for each model (and alignments):
>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   9.9e-36   8.5e-33       2     295 .]       4     304 ..       3     304 .. 0.80

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 9.9e-36
                 G-EEETTEEESSSEEE-TTSSTT.SSSHHHHHCTTSSEEEEEEE-SS-B--S-S--EEEETTCTEEEE---S-BS-H......HHHHHHHHHHHHHHHC CS
      DHO_dh   2 latkvlglkfknpiglAaGfdke.geeilkllklgfgaieigsvtpkpqeGnpkPrvfrlkedrsvlNslGlnneGl......davlekllkrrkeqee 93 
                 l+ +++g++ +np+ lA+G   + + ++++  ++gfg +  +++++     n   r+ + k+   +   lGlnn  l      +  l+++++ +k+   
  CCG91979.1   4 LSIEFAGIRSINPFWLASGPPTNsAAQVNAAFEAGFGGAVWKTIGTAVE--NVSSRYSSYKKWDRI---LGLNNLELisdrplELNLKEIQEIKKR--- 94 
                 6778999************8766156788899999*********98765..788888887775343...466665432210003444444444444... PP

                 C.CEEEEEEE-TTSS.HHHHHHHHHHHHG.GGESEEEEES-SCTCC....TSCCCGCHHHHHHHHHHHHHHHHSSEEEEEE-SSSSHHHHHHHHHHHH. CS
      DHO_dh  94 kkelginlskakktenavddyvevvrkig.pfadilelNvSsPntp....glrdlqekeelkaillkvvkevskvpvlvKlaPdltdeekkdiadvll. 186
                  ++ ++++s+  +       + e+v+k++   ad +elN  +P+       + ++++++ l +++++ vk  ++ p++vKl+P++td++++++a++   
  CCG91979.1  95 WPDRAVIVSIMEEY--DRKKWEELVKKVEaSGADGIELNFGCPHGMpergTGSKIGQDPTLCREVTSWVKRGTRLPLIVKLTPNVTDITQTAKAAMEGg 191
                 35678888888776..5678889999999889***********964344346899************************************99999887 PP

                 HHTECEEEE...BSEE--CTTCCGCCCCTT....SSEEEEEGGGHHHHH...HHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHH CS
      DHO_dh 187 elkldgiivtNttvqrlaidlkseknvkan....ktGGlsGkalkdial...kvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvf 278
                 +  l+ i+   t+  ++ +dl+++++        + GG sG+a+k+ial   + + ++  + +k++pi ++GGi++ +D +e +  GAs vq+ +a++ 
  CCG91979.1 192 ASALSLIN---TIQAITGVDLETFEVLPSIggksSYGGYSGEAIKPIALgltAKVASMEMVQEKQVPISAMGGISTWRDSVEFLLLGASSVQLCSAVML 287
                 77777776...8888888899998876554444589************722255777888899************************************ PP

                 HGTCHHHHHHHHHHHHH CS
      DHO_dh 279 egpkiakkikkeleelL 295
                 +g  i++++  +l++ +
  CCG91979.1 288 NGFRIIDDLLSGLKHWM 304
                 *************9976 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7  11.9   1.4e-20   1.2e-17       1      59 []     337     410 ..     337     410 .. 0.88

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 1.4e-20
     Fer4_21   1 AridedkCigCgkCliaCedtshqaieidaktvl...............kvvedeCvGCnlCssvCPvedciem 59 
                 A+id++kCi+C +C+i+C+d++h +i++++ + l               kv+ ++CvGC lC +vCPv+ ciem
  CCG91979.1 337 AQIDPQKCIHCFLCYIVCRDAAHRCIDLTDGKELytmippsgkhewifpKVRIEDCVGCSLCQHVCPVDSCIEM 410
                 89************************866554333667888888899989999********************9 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   3.9e-10   3.4e-07      64     155 ..     109     195 ..      72     197 .. 0.79
   2 ?   -3.3   0.0       4.2   3.6e+03     180     198 ..     250     268 ..     244     278 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.9e-10
                 -HHHHHHHHHHHHHTT-SCEEEEESSTTEEETTEEEGGGGGGSHHHHHHHHHHHHCCSSS-EEEEEESESSTTTC.HHHHHHHHHHCT-SEE CS
         Dus  64 dpallaeaAklvadlgadeIdlNvGCPskkvtrggaGaaLlrkpdlvaqivkavvkaveiPvtvkirigiddeeenalelakiveaaGaqal 155
                 d +   e +k+v+++gad+I+lN+GCP     ++g G+   ++p l  ++ + v++ + +P+ vk    + d      + ak++ + Ga al
  CCG91979.1 109 DRKKWEELVKKVEASGADGIELNFGCPHGM-PERGTGSKIGQDPTLCREVTSWVKRGTRLPLIVKLTPNVTDIT----QTAKAAMEGGASAL 195
                 566778999******************875.56789*****************************987777544....46777777777665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.2
                 HH-SS-EEEESS--SHHHH CS
         Dus 180 qavsipviaNGdIkdaeda 198
                 q+ ++p+ a G+I +++d 
  CCG91979.1 250 QEKQVPISAMGGISTWRDS 268
                 5667999999999999886 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   1.1   0.00013      0.11      29      49 ..     335     355 ..     321     358 .. 0.79
   2 !   23.0  10.5     1e-07   8.7e-05       1      51 [.     343     405 ..     343     406 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00013
      Fer4_7  29 ekveidpekClgCgaCvavCP 49 
                 + ++idp+kC++C  C  vC 
  CCG91979.1 335 QIAQIDPQKCIHCFLCYIVCR 355
                 56799***************6 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 1e-07
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenek.........gtekv...eidpekClgCgaCvavCPtg 51 
                 +Ci+C  C  +C   a +  + ++ k         g++++   +++ e+C+gC  C+ vCP++
  CCG91979.1 343 KCIHCFLCYIVCRDAAHRCIDLTDGKelytmippsGKHEWifpKVRIEDCVGCSLCQHVCPVD 405
                 7***********85555544443333233333333445556669999**************96 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1    0.0002      0.17      25      49 ..     336     357 ..     304     359 .. 0.75
   2 !   13.2   1.9   8.9e-05     0.076      34      49 ..     390     405 ..     361     417 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
      Fer4_9  25 karlraase...eaCigCgaCveaCpkg 49 
                 +a      +   ++Ci+C  C+ +C   
  CCG91979.1 336 IA------QidpQKCIHCFLCYIVCRDA 357
                 22......033369***********865 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 8.9e-05
      Fer4_9  34 eaCigCgaCveaCpkg 49 
                 e+C+gC  C ++Cp +
  CCG91979.1 390 EDCVGCSLCQHVCPVD 405
                 6788888888888764 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   1.5   9.1e-05     0.078       3      20 ..     337     354 ..     335     355 .. 0.93
   2 !   14.8   3.3   2.7e-05     0.023       9      21 ..     391     403 ..     385     404 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.1e-05
      Fer4_2   3 vvvdtdrCigCgaCvsaC 20 
                 +++d+++Ci+C  C+ +C
  CCG91979.1 337 AQIDPQKCIHCFLCYIVC 354
                 689************999 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.7e-05
      Fer4_2   9 rCigCgaCvsaCP 21 
                  C+gC+ C+++CP
  CCG91979.1 391 DCVGCSLCQHVCP 403
                 4************ PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   2.8   1.2e-07   9.9e-05       1      21 [.     336     356 ..     336     359 .. 0.89
   2 !    8.6   5.3    0.0024       2.1       6      21 ..     389     404 ..     384     411 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.2e-07
      Fer4_6   1 vveidpdkCigCgdCvrvCPe 21 
                 +++idp+kCi+C  C++vC  
  CCG91979.1 336 IAQIDPQKCIHCFLCYIVCRD 356
                 689****************65 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0024
      Fer4_6   6 pdkCigCgdCvrvCPe 21 
                  + C+gC  C  vCP 
  CCG91979.1 389 IEDCVGCSLCQHVCPV 404
                 577************7 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   2.2   0.00055      0.47       2      19 ..     337     354 ..     336     371 .. 0.86
   2 !   15.3   2.0   1.9e-05     0.017       7      24 ..     390     416 ..     385     445 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00055
     Fer4_10   2 vvidddtCirCgkCvkaC 19 
                 ++id+++Ci+C  C  +C
  CCG91979.1 337 AQIDPQKCIHCFLCYIVC 354
                 57999**********999 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.9e-05
     Fer4_10   7 dtCirCgkCvkaCPadl.........t 24 
                 + C++C  C+ +CP+d          +
  CCG91979.1 390 EDCVGCSLCQHVCPVDSciemitmeaQ 416
                 58*************665555444330 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   2.0   0.00012     0.099       2      18 ..     338     354 ..     337     358 .. 0.90
   2 !   17.6   3.2   2.8e-06    0.0024       5      21 ..     389     405 ..     385     406 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
                 EEETTTSSS-THHHHHS CS
        Fer4   2 videekCigCGaCvevC 18 
                 +id+ kCi+C +C+ vC
  CCG91979.1 338 QIDPQKCIHCFLCYIVC 354
                 79*************** PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.8e-06
                 TTTSSS-THHHHHSTTT CS
        Fer4   5 eekCigCGaCvevCPvg 21 
                  e+C+gC +C  vCPv+
  CCG91979.1 389 IEDCVGCSLCQHVCPVD 405
                 589************98 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.7   3.1e+03     147     159 ..      86      98 ..      69     130 .. 0.63
   2 !   18.7   0.4   1.1e-06   0.00094     166     227 ..     223     287 ..     168     289 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.7
         NMO 147 kearkvearGaDa 159
                 ke++++ +r++D 
  CCG91979.1  86 KEIQEIKKRWPDR 98 
                 4444455555542 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.1e-06
         NMO 166 eaGGhqG.tpevgdkglfaLvpqvldavd..iPviAaGGiidrrgvaaaLalGAsgvqigtrfLl 227
                   GG+ G   ++   gl+a v+++  + +  +P+ A GGi + r+    L lGAs vq+ ++ +l
  CCG91979.1 223 SYGGYSGeAIKPIALGLTAKVASMEMVQEkqVPISAMGGISTWRDSVEFLLLGASSVQLCSAVML 287
                 3499999533333489999999999888899*****************************99875 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   6.9     3e-06    0.0026       1      58 [.     343     404 ..     343     406 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3e-06
     Fer4_17   1 rCiqCgyClpeCpsyea..ydne.pkkllraakl.glleeaekeekaslCieCgeCerkCPq 58 
                 +Ci+C  C  +C   +   +d    k+l   + + g++e +  + ++++C++C +C+++CP 
  CCG91979.1 343 KCIHCFLCYIVCRDAAHrcIDLTdGKELYTMIPPsGKHEWIFPKVRIEDCVGCSLCQHVCPV 404
                 6***********9644433555404445555555244444444459***************6 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   1.5e-05     0.013     171     342 ..     104     316 ..      69     322 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
                 TTGGGSTSGSCCTTH.....................THHHHHHCCCHB-TC--HHHHHHHHHHHSSEEEEEEE-SHHH....HHHHHHTTESEEEE--G CS
      FMN_dh 171 llqelakpewaaeal...................kkasaaaefvgkqldpsltwddikwlreqtklplvvKGvltaed....akraveaGvdgivvSNH 246
                 +++e ++++w++ ++                   + ++++++ +g+  dp+l+ +  +w+++ t+lpl+vK   ++ d    ak a+e G++++ + N 
  CCG91979.1 104 IMEEYDRKKWEELVKkveasgadgielnfgcphgMPERGTGSKIGQ--DPTLCREVTSWVKRGTRLPLIVKLTPNVTDitqtAKAAMEGGASALSLINT 200
                 5555555666555556666666677777766643333333344444..99*********************875554433338999************9 PP

                 GGTSSTT---HHHCHHHHHHHH..............................SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHH CS
      FMN_dh 247 GGRqldgapatidvLpeiveav............................ggrievlvDgGirrGsDvlkAlalGAdavllGRpflyglaagGeeGver 317
                           t++vLp+i  +                             ++++++ + gGi++  D +  l lGA+ v l  +++      G     r
  CCG91979.1 201 IQAITGVDLETFEVLPSIGGKSsyggysgeaikpialgltakvasmemvqEKQVPISAMGGISTWRDSVEFLLLGASSVQLCSAVMLN----G----FR 291
                 999999999*********55555678888888999999999999999887669**************************988777543....2....25 PP

                 HHHHHHHHHHHHHHHHT-SBHHHHH CS
      FMN_dh 318 vleilraelertmallGvksvaeld 342
                 +++ l + l++ m+  G++s+a+ +
  CCG91979.1 292 IIDDLLSGLKHWMQAKGFRSIADFR 316
                 6666666666677777777776665 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00032      0.27     194     237 ..     240     283 ..     236     291 .. 0.89
   2 ?    2.3   0.0     0.078        66     302     328 ..     292     318 ..     286     324 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00032
                 HHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 194 tAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGs 237
                 tA ++ +e++++++vp+ a GGi++ +d v  l +Ga++v l s
  CCG91979.1 240 TAKVASMEMVQEKQVPISAMGGISTWRDSVEFLLLGASSVQLCS 283
                 7777889999*****************************98876 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.078
                 HHHHHHHHHHHHHHHHT-SSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 302 vveqlvgglrsgmgylGaktieelkek 328
                 +++ l++gl++ m+  G ++i++++ k
  CCG91979.1 292 IIDDLLSGLKHWMQAKGFRSIADFRGK 318
                 7899*******************9876 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  12.2   0.00011     0.093       3      64 ..     342     405 ..     340     406 .. 0.59
   2 ?   13.5   3.8   8.4e-05     0.072       3      29 ..     390     416 ..     388     445 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Fer4_8   3 ekCieCgaCqsaCp........vlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvg 64 
                 +kCi+C++C   C         +   +    + ++ ++ e          +  ++ C++c  C+ vCpv+
  CCG91979.1 342 QKCIHCFLCYIVCRdaahrcidLTDGKELYTMIPPSGKHEWIFP------KVRIEDCVGCSLCQHVCPVD 405
                 69********9994222221112222222333333333332333......556***************85 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 8.4e-05
      Fer4_8   3 ekCieCgaCqsaCpvlrrtkkhlldar 29 
                 e+C++C++Cq+ Cpv ++  +  ++a+
  CCG91979.1 390 EDCVGCSLCQHVCPVDSCIEMITMEAQ 416
                 78***********97666555444443 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.2     0.016        13       1      12 [.     344     355 ..     344     357 .. 0.95
   2 ?   12.0   6.0   0.00039      0.33       1      14 [.     392     405 ..     392     406 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.016
      Fer4_3   1 CtgCgaCvevCP 12 
                 C++C +C  vC+
  CCG91979.1 344 CIHCFLCYIVCR 355
                 ***********5 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00039
      Fer4_3   1 CtgCgaCvevCPvg 14 
                 C+gC++C  vCPv+
  CCG91979.1 392 CVGCSLCQHVCPVD 405
                 ************97 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.6e-05     0.073     254     308 ..     234     287 ..     223     289 .. 0.86
   2 ?   -3.8   1.4       6.1   5.2e+03     310     335 ..     393     419 ..     392     429 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.6e-05
                   -HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHH CS
  Glu_synthase 254 PlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigtaali 308
                   P+ l+l++ +  + e    ++v + a Gg+ t +d v  l+lGA +v++ +a ++
    CCG91979.1 234 PIALGLTAKVASM-EMVQEKQVPISAMGGISTWRDSVEFLLLGASSVQLCSAVML 287
                   8888888766665.4555789*****************************99996 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.1
                   TT--S--.-GGGT--TTSSS---HHHH CS
  Glu_synthase 310 lgCimar.vChtntCpvGvatqdpeLr 335
                   +gC  ++ vC  ++C   ++ + ++L+
    CCG91979.1 393 VGCSLCQhVCPVDSCIEMITMEAQKLE 419
                   799998647******999999998887 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   9.2   0.00023      0.19       1      66 [.     343     404 ..     343     405 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00023
     Fer4_16   1 rCgtCgkCaevCPtnaikekkekeiearecisy..ntaekkdlaedeekckkqeaitgCdiCqdvCPa 66 
                 +C+ C  C  vC  +a +      +   ++  +     +k++++  + +    e++ gC  Cq vCP+
  CCG91979.1 343 KCIHCFLCYIVCRDAAHRCI---DLTDGKELYTmiPPSGKHEWIFPKVRI---EDCVGCSLCQHVCPV 404
                 5***********99886555...233333332222334556666665555...59************7 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.2     0.089        76       1      23 [.     343     367 ..     343     381 .. 0.79
   2 ?   13.0   1.7   0.00017      0.14       2      26 ..     392     416 ..     390     432 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.089
     Fer4_22   1 rClsCgaCtlvCp..tCsCfdvede 23 
                 +C++C  C +vC   +  C+d++d 
  CCG91979.1 343 KCIHCFLCYIVCRdaAHRCIDLTDG 367
                 7***********6224568887775 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00017
     Fer4_22   2 ClsCgaCtlvCptCsCfdvedetke 26 
                 C++C+ C+ vCp  sC+++    ++
  CCG91979.1 392 CVGCSLCQHVCPVDSCIEMITMEAQ 416
                 ****************999877643 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.021        18      44      80 ..     327     367 ..     310     374 .. 0.64
   2 ?    7.8   2.6    0.0044       3.7      58      74 ..     389     405 ..     382     414 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.021
     Fer4_18  44 kkalkekeerkekgagdcidcescvkvcPtg....idirkG 80 
                 +k   + ++ ++ +  +ci+c  c  vc       id+ +G
  CCG91979.1 327 RKLEPTFKQIAQIDPQKCIHCFLCYIVCRDAahrcIDLTDG 367
                 55555556666677788999999999995321122666666 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0044
     Fer4_18  58 agdcidcescvkvcPtg 74 
                   dc+ c+ c +vcP++
  CCG91979.1 389 IEDCVGCSLCQHVCPVD 405
                 579************86 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.7    0.0041       3.5       1      15 [.     341     355 ..     341     357 .. 0.90
   2 ?    4.7   5.8     0.063        54       2      16 ..     390     404 ..     389     409 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0041
      Fer4_4   1 qerCigCgsCvaaCP 15 
                 +++Ci+C  C+++C 
  CCG91979.1 341 PQKCIHCFLCYIVCR 355
                 589***********5 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.063
      Fer4_4   2 erCigCgsCvaaCPq 16 
                 e C+gC  C  +CP+
  CCG91979.1 390 EDCVGCSLCQHVCPV 404
                 56************7 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.2     0.014        12       1      18 [.     339     356 ..     339     358 .. 0.92
   2 ?    5.7   2.5     0.025        21       4      17 ..     390     403 ..     389     404 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.014
     Fer4_13   1 VDrdtCiacgaCvelaPd 18 
                 +D ++Ci c +C+ ++ d
  CCG91979.1 339 IDPQKCIHCFLCYIVCRD 356
                 799***********9976 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.025
     Fer4_13   4 dtCiacgaCvelaP 17 
                 + C++c +C +++P
  CCG91979.1 390 EDCVGCSLCQHVCP 403
                 57***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3020.20
//
Query:       CCG91980.1  [L=470]
Description: Dihydroorotase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-21   77.0   0.0    3.3e-21   76.0   0.0    1.5  1  Amidohydro_1  Amidohydrolase family
    8.5e-18   65.1   0.0    2.9e-09   36.9   0.0    2.5  3  Amidohydro_3  Amidohydrolase family
  ------ inclusion threshold ------
      0.011   16.0   1.1      0.025   14.9   1.1    1.6  1  Urease_alpha  Urease alpha-subunit, N-terminal domain


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   5.5e-25   3.3e-21       1     343 [.      47     438 ..      47     439 .. 0.75

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 5.5e-25
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH.....HHHHHHHHHHT.....SSSEEEEEEESSEGG CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst.....giealleaaee.....lplglrilggkvsld 87 
                   +++PG+ID+H+Hle               +++ a  + sg   a+ +Gtt+ +++ + ++           l +  +       +++++++      
    CCG91980.1  47 YLIPGGIDVHTHLETV-----------FGGNQTADDFLSGHLGAIAGGTTSHINFCFPNPGqslhaT----LANWQQkvrskSLIDYGFHLV----- 123
                   589**********844...........679***************************8765854442....443333211143334444433..... PP

                   SGCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCC... CS
  Amidohydro_1  88 rgsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaes... 181
                    +++++ +++   l++g+  +ik          la +   ++ +e+  + +++ak+++l  ++Ha + + +   +++a ++  ++  +   a     
    CCG91980.1 124 IREESHLEELPMLLEKGV-SSIK--------CFLAYKDTLQIDEELFFKTVEKAKEHGLLTMVHAENGNIIDYLIKKALANQLIS--PIFHARTrpp 209
                   278899999999999997.4444........4589999***************************88888888999999988888..6666666678 PP

                   ......HHTTTHCCEE.EHCTCEEEHH......HHHHHHHHHHHHCEE.................................HHHHHHHHSEHHHHHH CS
  Amidohydro_1 182 ......lglldeikli.lahgvhltpt......eaellkerlkeagva.................................hcpfsnsilrsgreal 232
                         ++++ ++  +  a    ++++      e+++     ke g                                    ++++ ++ +++ +al
    CCG91980.1 210 elesqsIHFAASVASMlNAPLYIVHVSsikgleEIRRA----KERGTDlwaetcpqylffteadlerkghtpglehfegakWICSPPLRKQEDQMAL 302
                   99999966666665552555544554445544444444....44455555777777766666655555555555555555555555555******** PP

                   HHHHHHTSCEEEEEECT.................TSSCCGGHHHHHHHHHHHHHHCCTT.TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB CS
  Amidohydro_1 233 rkaldeGvkvglgtDga.................asgnslnlleelrlalklqrgllye.deegglslkealrmaTingAkalglddkvGsievGkd 311
                   ++ l+ G++ +++tD++                   + ++ + e+++l++      +y+ + + +l+ +++++++   +A  +gl+ ++G++++G+d
    CCG91980.1 303 WEGLRLGLIDVVSTDHCsfhfssqktrglsdfskIPNGVPGIEERMALLF------HYGcN-QRNLPMERFVSLTAEIPAFLFGLEGQKGRLAEGYD 392
                   *********************99999888777665555555655577777......45534.567******************************** PP

                   --EEEECC...CT...........CGGGTTTCTSEEEEEEEETTEE CS
  Amidohydro_1 312 ADlvvvdl...di...........laafvglkkdgnvkkvivkGkl 343
                   AD+v++++   +i           ++ ++g +  g   +v+++Gk+
    CCG91980.1 393 ADIVLWNPnkrQIlsvdshhiqldYNLYEGFTIEGGAEMVMLRGKI 438
                   ******9966522777778889999999999999999999999997 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.2   1.8e-09   1.1e-05       1      22 [.      39      60 ..      39      71 .. 0.88
   2 ?   -2.2   0.0      0.37   2.2e+03     251     290 ..     158     186 ..      61     216 .. 0.62
   3 !   36.9   0.0   4.9e-13   2.9e-09     400     473 .]     353     440 ..     330     440 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.8e-09
  Amidohydro_3  1 eviDakGrlvlPGFvDsHtHla 22
                  ++iDa+G++++PG++D+HtHl 
    CCG91980.1 39 KTIDANGKYLIPGGIDVHTHLE 60
                  68******************75 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.37
  Amidohydro_3 251 epyftgwpdfedea.laelvaaadergldvaihaigdaavd 290
                   e            + + + v++a+e+gl   +ha     +d
    CCG91980.1 158 E------------ElFFKTVEKAKEHGLLTMVHAENGNIID 186
                   2............2256778888888888888876655555 PP

  == domain 3  score: 36.9 bits;  conditional E-value: 4.9e-13
  Amidohydro_3 400 evlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvld...adpldvdppelaear...........vrltvvdGrvvy 473
                   ++    + l++e  + l+ + pA ++gle  kG+L++G+dAD+v+++   +++l vd  ++  +            +++++ +G+++y
    CCG91980.1 353 HYGCNQRNLPMERFVSLTAEIPAFLFGLEGQKGRLAEGYDADIVLWNpnkRQILSVDSHHIQLDYnlyegftieggAEMVMLRGKIIY 440
                   555567889**************************************99999999998877777699******************998 PP

>> Urease_alpha  Urease alpha-subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.1   4.1e-06     0.025      66      99 ..       1      34 [.       1      53 [. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.1e-06
  Urease_alpha 66 lDlvitnavilDatgivkadigikdgrivaiGka 99
                  +D+vi n ++++a g +  digi   +iva+Gk 
    CCG91980.1  1 MDVVIKNGILVNADGKTEMDIGIEAEKIVALGKN 34
                  69******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3417.26
//
Query:       CCG91981.1  [L=414]
Description: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-23   83.2   0.0    2.6e-23   82.8   0.0    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    8.9e-05   22.3   0.0    0.00051   19.8   0.0    2.0  2  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   2.9e-27   2.6e-23       2     206 ..      74     400 ..      73     401 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 2.9e-27
                    EEEES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.....THHHHHHHHHH.T.... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxx.x.... RF
  Peptidase_M20   2 lgsHlDvVpeeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.....gGakallegle.e.... 87 
                    +g+HlD+Vp    +g           G l+G         +la+le+lr++   +  p+ t+ l+ ++dEEg+r      G+ a+ ++l+ e    
     CCG91981.1  74 IGGHLDSVP----SG-----------GWLDGV------FDLLAGLEVLRTYTSVK--PPITLCLVDWADEEGSRfgrslFGSSAVSGSLKkEeifs 146
                    79*******....78...........999999......************99986..799***********9889999999999999888658999 PP

                    .............................TTCESEEEEEEEESSSBTCHSTETEEEE....................................... CS
                    .............................xxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................... RF
  Peptidase_M20  88 .............................rekvdavfelhieepgileagklaigvv....................................... 115
                                                 + k+ a++e+hie+++ile+  +  g v                                       
     CCG91981.1 147 lkdasglslaevleanglsankvgeaaklKNKAVAYLEVHIEQGPILEKLSVPLGAVlgtagverhrlvfrgktnhsgstpmwlrkdafvgaarlv 242
                    99999999*******************999999999************888888888*************************************** PP

                    ...................................................................EEEEEEEEEESHEEECCHHHHHHHHHHHH CS
                    ...................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 116 ...................................................................kvevelleggapvtlndsplvkalaeaae 144
                                                                                       + e e+l + +pv++  ++lv++++e++ 
     CCG91981.1 243 yflrsvanryqgvatagccelepgiptaipgvcrltieernldktnlekmweetvkeaqkiayeenlELEAEPLLRIEPVRFH-PQLVELCKESIL 337
                    ****************************************************************9877888888*********.************ PP

                    HHHTSCEEEEEESSSBHTHHHH..TTTEEEEEEESSG.GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 145 elfgekvelivsgpggtdarff..agiptvmifgpgs.glaHspnEyvdledlekgikvlarlle 206
                    e++  kv+   sg   +da+ +  agipt+m+f+ ++ g++Hsp+E+  +e+le ++ ++++ ++
     CCG91981.1 338 EVC-SKVHSLGSG-PLHDASEIakAGIPTAMMFVQSKeGISHSPKEDSVIEHLEMAVVAFEKWVK 400
                    *97.458888999.********99999*****996644*****************9999988765 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   5.7e-08   0.00051       1      83 [.      59     137 ..      59     189 .. 0.83
   2 ?   -0.2   0.0     0.075   6.8e+02     148     178 ..     352     382 ..     326     393 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.7e-08
                    EEEEEESTTCESEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSG.....SSHHHHHHHH CS
  Peptidase_M28   1 NviatlegkatdevlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEa.....gllGSkafak 83 
                    N+ a+++g+  +e l +g+H+Dsv+   +    G  D      a Le++r+ ++   +p  ++ ++ +  EE      +l+GS+a   
     CCG91981.1  59 NLWAKIQGQR-PEELWIGGHLDSVP---SG---GWLDGVFDLLAGLEVLRTYTS--VKPPITLCLVDWADEEGsrfgrSLFGSSAVSG 137
                    899*******.9*************...57...899999999***********7..58***************999999999998873 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.075
                    STTHHHHTTT--EEEECTSSS-TTT.TSTTSS CS
  Peptidase_M28 148 sDhspflkagvpvldlaetgfpevy.HtprDt 178
                     D+s ++kag+p++ + + + +e + H+p+ +
     CCG91981.1 352 HDASEIAKAGIPTAMM-FVQSKEGIsHSPKED 382
                    69999********999.777777777887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2847.11
//
Query:       CCG91982.1  [L=213]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-26   91.0   0.0    1.2e-12   48.1   0.0    2.2  2  TonB_C    Gram-negative bacterial TonB protein C-terminal
    7.5e-08   32.5   0.0     0.0049   17.1   0.0    2.3  2  TonB_2    TonB C terminal


Domain annotation for each model (and alignments):
>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   2.2e-14     2e-10      11      78 ..      49     115 ..      47     116 .. 0.90
   2 !   48.1   0.0   1.3e-16   1.2e-12      18      79 .]     136     197 ..     128     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 2.2e-14
                 HHTEEEEEEEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT-EE-TT--EEE......EEEEEEE CS
      TonB_C  11 rrgieGtvtveftidpdGnvtnvkvvkssgseiLdkaAleavrkwkfkpapkngkpvtvkitvpirFk 78 
                 r++++ +v + + i pdG v+n+++ kssg+++Ld+ Al  +rkwkf+   +  ++++ ki + +rF+
  CCG91982.1  49 RKREHRKVYILVEIAPDGLVKNATIYKSSGYPELDETALLSARKWKFSKEANHSNRIRRKI-ICVRFN 115
                 5666778999***************************************999988999998.888886 PP

  == domain 2  score: 48.1 bits;  conditional E-value: 1.3e-16
                 EEEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT-EE-TT--EEE......EEEEEEEE CS
      TonB_C  18 vtveftidpdGnvtnvkvvkssgseiLdkaAleavrkwkfkpapkngkpvtvkitvpirFkl 79 
                 + v   + ++G+v++ ++ kssg+ +Ld+ Al+av++wk+ pa+k+++pv+ k+ +p++F+l
  CCG91982.1 136 CYVLAEVLATGHVKSTALYKSSGDAELDRLALNAVKRWKLHPAKKGNRPVESKVIIPVQFHL 197
                 56777899****************************************************87 PP

>> TonB_2  TonB C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   8.1e-06     0.073      22      58 ..      50      86 ..      34      90 .. 0.84
   2 !   17.1   0.0   5.4e-07    0.0049      22      69 ..     130     177 ..     116     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.1e-06
      TonB_2 22 isgnleavveitidpdGeivsvrlvksSgneafDkav 58
                  +  ++++ + i+pdG + +  + ksSg +++D+++
  CCG91982.1 50 KREHRKVYILVEIAPDGLVKNATIYKSSGYPELDETA 86
                467899************99**************976 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 5.4e-07
      TonB_2  22 isgnleavveitidpdGeivsvrlvksSgneafDkavkrAiekasplP 69 
                 +++  +++v   +  +G++ s+ l ksSg++++D+ +++A+++ +  P
  CCG91982.1 130 QKEAVVCYVLAEVLATGHVKSTALYKSSGDAELDRLALNAVKRWKLHP 177
                 478889999999******99*********************9765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1565.23
//
Query:       CCG91983.1  [L=627]
Description: putative Peptidase S9, prolyl oligopeptidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-44  152.5   0.0    1.6e-44  151.9   0.0    1.3  1  Peptidase_S9    Prolyl oligopeptidase family
    1.3e-12   47.7   0.0    2.7e-12   46.7   0.0    1.5  1  DLH             Dienelactone hydrolase family
    3.3e-11   43.3   0.0    8.9e-07   28.8   0.0    2.3  2  Peptidase_S15   X-Pro dipeptidyl-peptidase (S15 family)
    2.2e-10   40.2   0.0    6.4e-06   25.6   0.0    2.2  2  Hydrolase_4     Serine aminopeptidase, S33
    1.1e-09   38.3   0.2    7.9e-08   32.3   0.2    2.2  2  Abhydrolase_1   alpha/beta hydrolase fold
    1.5e-06   28.3   0.2      0.069   13.0   0.0    2.8  3  Abhydrolase_3   alpha/beta hydrolase fold
    1.5e-06   29.0   0.0    3.2e-06   27.9   0.0    1.6  1  Abhydrolase_6   Alpha/beta hydrolase family
    1.6e-06   28.2   0.0      1e-05   25.6   0.0    2.1  1  BAAT_C          BAAT / Acyl-CoA thioester hydrolase C termina
    2.3e-06   27.5   0.0    9.5e-06   25.4   0.0    1.9  1  Esterase        Putative esterase
    1.1e-05   24.5   0.2      0.057   12.2   0.0    2.4  3  Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propel
    8.2e-05   21.4   0.0     0.0019   17.0   0.0    2.1  1  AXE1            Acetyl xylan esterase (AXE1)
    0.00056   19.3   0.0     0.0011   18.4   0.0    1.4  1  LIP             Secretory lipase
    0.00061   19.7   0.1       0.57   10.2   0.0    3.3  3  PD40            WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
      0.012   16.5   0.0       0.13   13.1   0.0    2.4  2  CelD_N          Cellulase N-terminal ig-like domain
      0.012   15.3   0.0      0.034   13.8   0.0    1.7  1  FSH1            Serine hydrolase (FSH1)


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9   0.0   1.3e-47   1.6e-44       1     210 [.     414     626 ..     414     627 .] 0.93

  Alignments for each domain:
  == domain 1  score: 151.9 bits;  conditional E-value: 1.3e-47
                   ----HHHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE CS
  Peptidase_S9   1 psfsselqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevp 97 
                   ++fs ++q+la+rGy v++ n+rGs+gyG++f++ag++++g++ +dD+++a +++++++y+++ ++ai+G SyGGy t+aal+  pd F++++ + +
    CCG91983.1 414 WEFSPVVQFLANRGYGVLQFNFRGSTGYGKDFYNAGNKQWGKKMLDDILDAKKWVIEQQYANPHKVAIMGFSYGGYATLAALAFYPDEFACGIDAMG 510
                   78999******************************************************************************************** PP

                   ---CCCHHCS.TTS...THH.HCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTT CS
  Peptidase_S9  98 vvdvlrydsd.tdl...lte.eymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvg 189
                    +++ +   + +     l+       g+p+ + e++   sp+  +d+  +++plL+ +G++D rv   e+ ++v+aL+kkg++v++l+f ++gH + 
    CCG91983.1 511 PSNLFTLFNSfPPYwepLKIlIKKRLGDPQTDSEYFTSSSPLFAADR--IKAPLLIGQGENDVRVKKMESDQIVEALRKKGQTVEYLVFQNQGHDFL 605
                   *999776555044444444444568899999****************..************************************************ PP

                   SSHHHHHHHHHHHHHHHHHCT CS
  Peptidase_S9 190 kprakveelarllaFlkealg 210
                   +p ++ + ++ +  Fl+++lg
    CCG91983.1 606 NPANRLQFFEAVEVFLNKYLG 626
                   *******************98 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   2.3e-15   2.7e-12      31     195 ..     418     610 ..     384     624 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 2.3e-15
         DLH  31 diserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevstkkvgvvGfCmGGalall.laaevpevdaavaf 128
                  +++ la+ GY +l   + +r+    ++ ++  +a ++ +     +k+ldd+ +a +++ ++++++++kv+++Gf  GG  +l+ la + +e+++ +  
  CCG91983.1 418 PVVQFLANRGYGVLQ--FNFRGS--TGYGKDFYNAGNKQW----GKKMLDDILDAKKWVIEQQYANPHKVAIMGFSYGGYATLAaLAFYPDEFACGIDA 508
                 566667777777764..334444..234444444443333....45688888899999999999***************999862566779******** PP

         DLH 129 YG...................................lspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFand 192
                  G                                    + +++l +a++ikap+l+  ge+D  +++ e +++ eal++++ ++e  v+++ gH F+n+
  CCG91983.1 509 MGpsnlftlfnsfppyweplkilikkrlgdpqtdseyFTSSSPLFAADRIKAPLLIGQGENDVRVKKMESDQIVEALRKKGQTVEYLVFQNQGHDFLNP 607
                 ************************************9999**********************************************************9 PP

         DLH 193 sre 195
                  ++
  CCG91983.1 608 ANR 610
                 887 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   7.5e-10   8.9e-07      11     140 ..     390     516 ..     379     521 .. 0.73
   2 !   12.1   0.0   8.9e-05      0.11     203     267 ..     534     602 ..     526     603 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 7.5e-10
                    EE..TTSSSEEEEE..EEESS-CCT.CCCCHTTCHHCCHGGGHHHHHTT-EEEEEE-TTSTT.S-S---TT....TTTHHHHHHHHHHHHHHC.TT CS
  Peptidase_S15  11 rPetkskeklPvll..trtPYgkndelasdkalaleelelqdkvfvarGYavVvqdvrGtgg.SeGeftvg....dsdeaedgadvidWlakq.pw 98 
                    +P  ++ ++lP +l  +  P++++           +     ++++++rGY v+  + rG+ g  + +++ g    +++  +d  d+ +W+ +q   
     CCG91983.1 390 LP-RENTKNLPFVLyvHGGPWTRDYWE------FSP----VVQFLANRGYGVLQFNFRGSTGyGKDFYNAGnkqwGKKMLDDILDAKKWVIEQqYA 474
                    55.444444444431144555543211......111....1234899************75414444444477779999*************9888 PP

                    EEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEECE-S-TCC CS
  Peptidase_S15  99 snGkVgmtGiSYlGttqllaaatgvpalkaivpeaaisdlyd 140
                       kV+ +G+SY+G+  l+a+a  +++ ++ + +++ s+l++
     CCG91983.1 475 NPHKVAIMGFSYGGYATLAALAFYPDEFACGIDAMGPSNLFT 516
                    889*************************99999999998876 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8.9e-05
                    HCCCC--SSSHHHHTT-HHHHHCT--S-EEEEEECCSSTTC.CHHHHHHHHHCCTT-...EEEEECECT CS
  Peptidase_S15 203 selletgdydafWkdrnlsedadkvkapvllvgGwnDwnvk.ngaiklyealkapgv...klilgpwtH 267
                    ++l + +  +++ ++ ++  +ad++kap+l+ +G nD  vk  ++ ++ eal+++g+   +l++ +  H
     CCG91983.1 534 KRLGDPQTDSEYFTSSSPLFAADRIKAPLLIGQGENDVRVKkMESDQIVEALRKKGQtveYLVFQNQGH 602
                    5566667888999999999999*******************99999*********99999999988877 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   5.4e-09   6.4e-06       7     109 ..     401     511 ..     396     537 .. 0.79
   2 !   12.4   0.0   5.8e-05     0.069     186     236 ..     554     606 ..     549     609 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 5.4e-09
  Hydrolase_4   7 vvlvHGl..aehsgryaelaeaLaaqGfavyalDhrGhGrse...gkrghvpsfddyvdDlaafvekvk.eehpel.plfllGhSmGGliallyllry 97 
                  v+ vHG   +  ++ ++ +++ La++G+ v+ ++ rG    +    + g  +  ++++dD+  + + v  +++ +  ++ ++G S GG+ +l++l+ y
   CCG91983.1 401 VLYVHGGpwTRDYWEFSPVVQFLANRGYGVLQFNFRGSTGYGkdfYNAGNKQWGKKMLDDILDAKKWVIeQQYANPhKVAIMGFSYGGYATLAALAFY 498
                  7778886335568999********************864443344666666677889999888887777355555589******************** PP

  Hydrolase_4  98 pdkva.glilsaP 109
                  pd++a g+  ++P
   CCG91983.1 499 PDEFAcGIDAMGP 511
                  **99978767776 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.8e-05
  Hydrolase_4 186 raakitlPllllhGeaDkvvdpeasrelyerlgsk..dktlklypglyHelln 236
                   a++i++Pll+ +Ge+D  v++ +s +++e+l++k   +++ ++++  H+ ln
   CCG91983.1 554 AADRIKAPLLIGQGENDVRVKKMESDQIVEALRKKgqTVEYLVFQNQGHDFLN 606
                  5889*****************************99656677788999998886 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.2   6.6e-11   7.9e-08       2     100 ..     400     504 ..     399     520 .. 0.90
   2 ?    3.7   0.0     0.033        40     207     252 ..     555     604 ..     531     605 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 6.6e-11
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTS.TTSSSTTTGB.CHHSHHHHHHHHH...HH..HHHCTTSSEEEEEETHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGv.gySspapacinddygtasvaddld...ri..ldalgddkltlvGhSmGGmialaya 91 
                     ++++hG+p + d+w    +++ La +g+ v+ ++ rG+ gy++   +  n+++g  ++ d+ld   ++  ++  + +k++++G+S+GG   la++
     CCG91983.1 400 FVLYVHGGPWTRDYWEFSPVVQFLANRGYGVLQFNFRGStGYGKDFYNAGNKQWGKKMLDDILDakkWVieQQYANPHKVAIMGFSYGGYATLAAL 495
                    699***********************************7577777777777999**9999999999977799999999999*************** PP

                    HHHGGGEEE CS
  Abhydrolase_1  92 aeyperVka 100
                    a yp+  ++
     CCG91983.1 496 AFYPDEFAC 504
                    ****98765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.033
                    THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS....EEEEEEETCSSSH CS
  Abhydrolase_1 207 lknvlaptlvisgtsDplvppkaledlaqllpk....krlvvisdagHla 252
                     + ++ap l+ +g++D  v+  +++++ ++l+k    ++++v+++ gH+ 
     CCG91983.1 555 ADRIKAPLLIGQGENDVRVKKMESDQIVEALRKkgqtVEYLVFQNQGHDF 604
                    334899***************999999999888889************85 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.6   1.9e+03       1      10 [.     401     410 ..     401     415 .. 0.89
   2 !   13.0   0.0   5.8e-05     0.069      48      88 ..     457     494 ..     453     510 .. 0.87
   3 !   11.9   0.0   0.00012      0.15     155     210 ..     549     605 ..     522     606 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.6
                    EEEE--STTT CS
  Abhydrolase_3   1 lvyfHGGGfv 10 
                    ++y+HGG ++
     CCG91983.1 401 VLYVHGGPWT 410
                    79*****997 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 5.8e-05
                    HHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHH CS
  Abhydrolase_3  48 avedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaav 88 
                     ++d+l+a +w+ eq   + a+p +++++G S GG  ++a+
     CCG91983.1 457 MLDDILDAKKWVIEQ---QYANPHKVAIMGFSYGGYATLAA 494
                    589************...69***************766554 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00012
                    TSGGGCS-.SST---EEEEEETT-TTHH..HHHHHHHHHHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 155 aspllaed.lsglpptlvvvaefDplrd..egeayaerlraagvevelieyegmvHgfa 210
                     spl+a+d ++  +p l+  +e+D+  +  e+ +  e+lr++g+ ve+ +++++ H+f+
     CCG91983.1 549 SSPLFAADrIK--APLLIGQGENDVRVKkmESDQIVEALRKKGQTVEYLVFQNQGHDFL 605
                    57888853366..99*********9766226779***********************97 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.7e-09   3.2e-06       1     126 [.     401     547 ..     401     611 .. 0.60

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.7e-09
                    EEEE--GC.....GCHHHHHHHHCCT.CEEEEE--TTS.TS-GGCS--HHH..........CHHHHHHHCCTT......TTSEEEEEETCHHHHHH CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaag.vhvlapDlpGh.Grsdpppldled..........ladlaalldelaa....gggpvvlvGHSlGGalal 80 
                    vl +HG++ +++ W ++p++ +la + + vl + ++G  G   +++  + +          l+d++++   +++    ++++v ++G S+GG+  l
     CCG91983.1 401 VLYVHGGPWTRDYWEFSPVVQFLANRgYGVLQFNFRGStG--YGKD--FYNagnkqwgkkmLDDILDAKKWVIEqqyaNPHKVAIMGFSYGGYATL 492
                    6889****9999996666655555555888******8875..3333..222112222224445554444444446666**************9777 PP

                    HHHHCC....EEEEES-..----TTTS----TTHH........HHHHTT-CCCCHC CS
  Abhydrolase_6  81 aaapla..lvvgvlldppptalpagllaaalelll........allallrllawls 126
                    aa++      +++ +d+++++  ++l++ ++++++        +l+++ ++ ++++
     CCG91983.1 493 AALAFYpdE-FACGIDAMGPSNLFTLFNSFPPYWEplkilikkRLGDPQTDSEYFT 547
                    744444742.4455555221333333333333333111111113333444444443 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   8.4e-09     1e-05       9     166 ..     464     607 ..     462     617 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 8.4e-09
                 HHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS.SEEEEEEES--SB--SSEEEETTE..EE----B-GGG-EE-TTS-EE-TT-B--TTTGGGCC CS
      BAAT_C   9 ainyllrhpkvkkdkigllGiSkGgelalllasflk.kisavvlingsavvvegklvykdeskvlpelklsmeklkvnknglldivdvlallkeklaek 106
                 a +++ ++ + +  k++++G S Gg  +l+  +f++ +  + +   g++  +       ++   +p+ ++  + l+++  g  ++           ++ 
  CCG91983.1 464 AKKWVIEQQYANPHKVAIMGFSYGGYATLAALAFYPdEFACGIDAMGPSNLF-----TLFN--SFPPYWEPLKILIKKRLGDPQTDSEYF-----TSSS 550
                 779*************************999999996777777666665554.....3444..688999999998776666554433322.....2345 PP

                 CB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB-S---ST CS
      BAAT_C 107 alipvekakgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGHliepP 166
                  l+ ++++k+p+l+ +ge+D  ++  es  +++e L+k+g+   v++l +++ GH +  P
  CCG91983.1 551 PLFAADRIKAPLLIGQGENDVRVKKMESD-QIVEALRKKGQT--VEYLVFQNQGHDFLNP 607
                 59*********************988876.9999********..899999*****76555 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0     8e-09   9.5e-06      14     227 ..     390     603 ..     383     606 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 8e-09
                 E.CC.GGTTTEEEEEEE--TTHHCCH.HHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCHCHHHHTHHHHHHHHHCS CS
    Esterase  14 LPedyspgrkypvvylldGltgwdqn.frakelleslaregeiaeviivvvprggessfysdwdlgarfyenategpgaeayetfltqeLlplldanfr 111
                 LP++  +++++p v++ +G   w+++ ++ + +++ la +g     ++ +  rg +         g+ fy++++++ g++ +++ l +    ++ ++  
  CCG91983.1 390 LPRE--NTKNLPFVLYVHG-GPWTRDyWEFSPVVQFLANRG---YGVLQFNFRGSTG-------YGKDFYNAGNKQWGKKMLDDILDA--KKWVIEQQY 473
                 5555..5555666666666.555544144445555555554...2222222222222.......335577777777666666666666..478888888 PP

                 EECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC.........HCHHHC.............TTCCHHHCC-CCCCHCHHCHTTSEEEEEE CS
    Esterase 112 tapdgravaGqSmGGlgALilalkhpdrFgsvssfSpivnps.........namWgq.............eekeawqendpvllakelsaslkalriyl 188
                  +p + a++G+S GG++ L + + +pd+F++ +  +  + ps         +++W +             +++e + +  p++      a++ +   ++
  CCG91983.1 474 ANPHKVAIMGFSYGGYATLAALAFYPDEFAC-GIDA--MGPSnlftlfnsfPPYWEPlkilikkrlgdpqTDSEYFTSSSPLFA-----ADRIKAPLLI 564
                 88999************************65.4444..4455666999999999999999999887765444444444444443.....4667788999 PP

                 EECTTBCCCHTSCHHHHHHHHHHHCCHHHHCCCCCCTT- CS
    Esterase 189 dvGtseddlgeqlsveilevlarnrelkeqlaargvege 227
                  +G+++ ++++  s +i e l+++ +  e+l+ ++++++
  CCG91983.1 565 GQGENDVRVKKMESDQIVEALRKKGQTVEYLVFQNQGHD 603
                 999999999999999999999999999999988888775 PP

>> Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.8e-05     0.057     130     192 ..      43     104 ..      39     146 .. 0.84
   2 !    9.7   0.1   0.00027      0.33     286     409 ..     234     354 ..     201     358 .. 0.76
   3 ?   -3.7   0.0       3.3   3.9e+03     253     291 ..     568     605 ..     565     610 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.8e-05
                     EE-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEESS-S CS
  Peptidase_S9_N 130 avsedgkllAyslsksGsdwytirvkdietgedlpdeledvkfsgivWaadekgffYtrydke 192
                     ++s+dg+ lAy + ++  + + +r+   ++ e +   le+  +  + W++d++ +fY + +k 
      CCG91983.1  43 KISPDGEKLAYLYPENRVRNVRVRFLG-QKNELTITHLEKRGIRHFFWHPDSNSIFYLEDQKG 104
                     69*************988888888887.666777899********************985543 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00027
                     ETTEEEEEE-TT-TT-EEEEEETTSSSGGGEEEEE--.SSCEEEEEEECTTEEE..EEEEETTEEEEEEEETTTS-.EEEEEB-SSSSEEEEEE- CS
  Peptidase_S9_N 286 egdrfliltndgapnfrlvsvdlndpspsewkelvperekvvleeitvfknylv..vsyrkdvlsrvqvvdlkngkvllfevplpgvgsvssasg 378
                     +++ +++l+ ++a   rl+s+ +++++    k+l +   ++v+  ++  k y +  v+++kd +++ q +d + ++ +   ++   +g+++ +s 
      CCG91983.1 234 DNKSLWLLSSKKANTTRLISMAIESTQ---RKVLYEDPRYDVAGIVENPKTYALeaVAIIKD-KTQWQFFDPQMEE-YFAYLKTIHSGTIEIISR 323
                     56789999*****************97...67899999999987666666664322444444.5667777745444.9999999999******** PP

                     -TT-SEEEEEEEETTCEEEEEEEETTTTCEE CS
  Peptidase_S9_N 379 ekedselfysfsSfltPstiykldlatgele 409
                     ++ed+  +++fsS + P+t y + +++ + e
      CCG91983.1 324 NYEDTVWTIRFSSDMDPGTYYLFYPKKMKAE 354
                     *********************9888877665 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3.3
                     --EEEEEEGGGTSS--EEEEESSSSS-EEEEEEETTEEE CS
  Peptidase_S9_N 253 tnelyvldlekeskkvlklvdnrfdaeysvehnegdrfl 291
                     +n+++v+++e+++  v++l ++    ey v +n+g++fl
      CCG91983.1 568 ENDVRVKKMESDQ-IVEALRKKGQTVEYLVFQNQGHDFL 605
                     5788888888886.5555555544448888888888886 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.6e-06    0.0019      59     149 ..     374     467 ..     364     504 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.6e-06
                 EEEEEGGGEEEEEEEEEES.SSSSEEEEEEEE-..TT--GGGHHHHHHH.HHTT-EEEEEE-TTTS..SSB-SSCCSS-SSSSTTTTTTSTTT- CS
        AXE1  59 ltfegvrgarikaklvlPkekeeklPavvefhG..Yegsrgeihdllny.aaaGyavvvmdvRGqggesedkvgskgnkakGfiirGlldkekl 149
                 + f++  +  i++ l+lP+e+ ++lP v+  hG  ++ + +e +  +++ a  Gy v++ + RG  g+ +d  +  +++    ++  +ld++k 
  CCG91983.1 374 IAFRARDNLLIEGYLTLPRENTKNLPFVLYVHGgpWTRDYWEFSPVVQFlANRGYGVLQFNFRGSTGYGKDFYNAGNKQWGKKMLDDILDAKKW 467
                 6788888999**********************95556678999999*994557*****************977766555544555555554443 PP

>> LIP  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     9e-07    0.0011      22      94 ..     423     500 ..     415     512 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9e-07
         LIP  22 lLkeGyyVvvpDyeGpks....tftv.grqsgkavLdsiraalksekvtgiksdakvalwGYSgGslAsawAaelqpe 94 
                 l ++Gy V    + G  +     +   ++q gk++Ld i  a k       ++  kva++G+S+G+ A+ +A +  p+
  CCG91983.1 423 LANRGYGVLQFNFRGSTGygkdFYNAgNKQWGKKMLDDILDAKKWVIEQQYANPHKVAIMGFSYGGYATLAALAFYPD 500
                 4578999999999999888887665416899************999999999********************988774 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00048      0.57       5      25 ..      33      53 ..      30      55 .. 0.79
   2 ?    5.4   0.0     0.015        18      14      32 ..      87     104 ..      83     111 .. 0.82
   3 ?   -1.4   0.1       2.1   2.5e+03      16      23 ..     231     238 ..     231     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00048
                -SSSS.EEEEEE-TTSSEEEE CS
        PD40  5 tntpgnegaPsfSPDGkrlaF 25
                ++++ +  aP +SPDG +la+
  CCG91983.1 33 LFSEPEAAAPKISPDGEKLAY 53
                44455599************9 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.015
                 EEE-TTSSEEEEEEECT.T CS
        PD40  14 PsfSPDGkrlaFsSdRgsG 32 
                 +++ PD +++ +  d++ G
  CCG91983.1  87 FFWHPDSNSIFYLEDQK-G 104
                 79**********99998.4 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.1
                 E-TTSSEE CS
        PD40  16 fSPDGkrl 23 
                 fSPD k+l
  CCG91983.1 231 FSPDNKSL 238
                 9***9987 PP

>> CelD_N  Cellulase N-terminal ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       1.4   1.7e+03      54      69 ..     217     232 ..     198     236 .. 0.79
   2 ?   13.1   0.0   0.00011      0.13      33      83 ..     295     349 ..     282     352 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.4
                 XXXXXXXXXXXXXXXX CS
      CelD_N  54 gsdessgenvhiiDFS 69 
                  +++  ++nv i+DFS
  CCG91983.1 217 LQWQLEEDNVKIVDFS 232
                 56778899*******9 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00011
                 .XXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXX CS
      CelD_N  33 qfelvdaktgkvvytgtlkkagsde....ssgenvhiiDFSdfttpGtYtikvdg 83 
                 q++  d + ++  +  ++  +g+ e      +++v++i FS+   pGtY++++++
  CCG91983.1 295 QWQFFDPQMEEYFAYLKTIHSGTIEiisrNYEDTVWTIRFSSDMDPGTYYLFYPK 349
                 577777777766666666666655566667799******************9986 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.8e-05     0.034     100     201 ..     475     603 ..     438     612 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.8e-05
        FSH1 100 ngpfdGiiGFSqGaalaallaslleellkea..shpslkfailvsGfkleepk.....................yeeyyeedkiqtptLhvlGelDtvv 175
                 n   + i+GFS G+  + + ++     +        + + + l+ +f +  +                       ++++  d+i+ p L   Ge+D  v
  CCG91983.1 475 NPHKVAIMGFSYGGYATLAALAFYPDEFACGidAMGPSNLFTLFNSFPPYWEPlkilikkrlgdpqtdseyftsSSPLFAADRIKAPLLIGQGENDVRV 573
                 444688999999976655555555544443355344445555555555533333466666666666666665544447789999*************** PP

        FSH1 176 deerseaLaeafkns....skvlkHpggHf 201
                 ++ +s +++ea +++    + +++ ++gH 
  CCG91983.1 574 KKMESDQIVEALRKKgqtvEYLVFQNQGHD 603
                 *************99877666667777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4236.28
//
Query:       CCG91984.1  [L=324]
Description: putative enzyme of poly-gamma-glutamate biosynthesis (Capsule formation) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-69  233.4   0.0    3.4e-69  233.2   0.0    1.1  1  PGA_cap     Bacterial capsule synthesis protein PGA_cap
  ------ inclusion threshold ------
       0.16   12.3   0.0       0.53   10.6   0.0    1.8  1  Mur_ligase  Mur ligase family, catalytic domain


Domain annotation for each model (and alignments):
>> PGA_cap  Bacterial capsule synthesis protein PGA_cap
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.2   0.0   3.8e-73   3.4e-69       2     257 .]       3     247 ..       2     247 .. 0.92

  Alignments for each domain:
  == domain 1  score: 233.2 bits;  conditional E-value: 3.8e-73
     PGA_cap   2 lafvGDvmlgralkqalkekeydfdpifaevkpllraaDlaivNlEtpvteegeplsg..k.plfrappevlaalkeagfdvvslAnNHalDygeeGll 97 
                 +++vGDvmlgr +++ l+   +d +++++++++l+r aD   +NlE+++t+++e ++   k + f++  +++++lk+ag++vvslAnNH+lD+g+++l 
  CCG91984.1   3 IILVGDVMLGRLVDELLEV--VDSSYPWGDLLSLFRCADWKGCNLECVFTDQTEFYELppKvFRFKSAVKNIEVLKDAGIRVVSLANNHVLDFGKKALC 99 
                 899************9886..6******************************9977764358************************************* PP

     PGA_cap  98 etlealdeagikhaGagrseaearkpailevkgirvallaytegtnstaeakagepnseeakeeeagaskerpgvaskdleklladirearkeadlviv 196
                 e l++ld+agi h+Gag +++e+r p+i +++++++++la+t  +           +s+ea+e eag+   + ++++ +++ l + ++e ++++d++iv
  CCG91984.1 100 EMLDHLDAAGILHSGAGVNLEESRLPVIDQIQRLKIGFLAFTDNE-----------PSWEASE-EAGIHYVPIQLDDPRAQTLFELVKETKTKVDFLIV 186
                 ******************************************433...........4444444.4466666666777788***********88****** PP

     PGA_cap 197 slHwgeeyqekpadeqrelaralidaGadvviGhhpHvlqgieiykgklifYSlGNfifdq 257
                 s+Hwg +++ ++++e+ ++a++li++Gadvv+Gh+pHv + iei +  li+YS+G+fi+d+
  CCG91984.1 187 SAHWGPNWGFEVPTEHIDFAHKLIEQGADVVFGHSPHVFRAIEIFRHSLILYSCGDFIDDY 247
                 **********************************************************996 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     6e-05      0.53      30      49 ..     204     223 ..     202     240 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6e-05
                 ESSHCHHHTT-EEEES-HGG CS
  Mur_ligase  30 dfieslialGaaavvghdaa 49 
                 df+ +li++Ga +v+gh+++
  CCG91984.1 204 DFAHKLIEQGADVVFGHSPH 223
                 99*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2121.76
//
Query:       CCG91985.1  [L=248]
Description: Predicted permease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-35  122.2  34.9    2.9e-35  122.0  34.9    1.0  1  TauE      Sulfite exporter TauE/SafE


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0  34.9   1.6e-39   2.9e-35       2     235 ..       4     241 ..       3     242 .. 0.90

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 1.6e-39
        TauE   2 llagllaGfvagllGiGggliavPlLlll.lppavavatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpse.....llkl 94 
                  ++g+++ f+ gl+G+Ggg+i+vPlL+l+ + p +a+++sl  +++ ++ +++ ++ +g++d ++ll+l+lg+++G++lG+l+l  + ++     +++l
  CCG91985.1   4 YIVGFFVAFLIGLTGVGGGTITVPLLILMgIEPTIAIGISLGFSALIKIPSSMIYFFKGHIDKKTLLYLSLGGIPGVVLGSLILRKIYQQdhlksIMLL 102
                 689*************************769*************************99***************************88866544445888 PP

        TauE  95 lfgvlllllallmllrkkrsrakgrerrptaillvligglvGllsGllGiGgGfllvpllllllglplkkavatslllilvislagalgyalagavdwp 193
                 l+gv++++++l  l+   +   +  ++ +  +ll+l+++l+G+  G ++ G+G+l++ lll+l+ l++  +v+t++++ l+ sl+g  +++++g  d +
  CCG91985.1 103 LIGVIIVISSLINLWHTIKDYRP--TTNKYTLLLPLCAFLIGFEVGTFSSGAGALGTLLLLSLTTLSPSDVVGTDIAFGLILSLIGGGIHLFQGLSDSS 199
                 88888888888888855533333..333444446666677*********************************************************** PP

        TauE 194 llllllpgallGallGarlarrlsertlrrlfallllvlgvk 235
                 +++ ++ g+++Ga+ Ga++  +++++  r++++++l+++gv 
  CCG91985.1 200 IIFKMVMGGIFGAIGGAYACMVFPKKPARIFLLIWLIFVGVM 241
                 9999************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1646.59
//
Query:       CCG91986.1  [L=291]
Description: phosphoribulokinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-74  250.2   0.0    1.6e-74  249.9   0.0    1.1  1  PRK         Phosphoribulokinase / Uridine kinase family
     0.0061   16.5   0.0     0.0096   15.8   0.0    1.3  1  APS_kinase  Adenylylsulphate kinase


Domain annotation for each model (and alignments):
>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.9   0.0   1.8e-78   1.6e-74       1     197 []       7     215 ..       7     215 .. 0.99

  Alignments for each domain:
  == domain 1  score: 249.9 bits;  conditional E-value: 1.8e-78
         PRK   1 vIgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleerkrakekevsflspeandfdllyevlkelkegkkvdkpiYsheteea 99 
                 +I+++gsSGaG++tv+ ++++if+rek++a  iegd+f+r+dr e+++++ee +++++ ++s+++pean f++l+  ++e++++++++ ++Y h++eea
  CCG91986.1   7 IISITGSSGAGTSTVKVAFQHIFRREKINAFIIEGDAFHRYDRQEMRAKMEEMEKKGNPHFSHFGPEANLFEELEALFREYGQTGRGKYRKYLHNEEEA 105
                 8************************************************************************************************** PP

         PRK 100 ap.........dkeeliegadvlviEGlhalyder...vaelldlkiyvdisidlelarklqRDiaeRGrsleavldsilrrkpdyvnyikpqfseadl 186
                 ap         ++ee++eg+d+l++EGlh++ +++   + ++ dl i+++++i+le+++kl+RD++eRG+  e+v+++ilrr+pdyvnyi+pqfs++ +
  CCG91986.1 106 APygqkpgtftPWEEIPEGTDLLFYEGLHGALVTDkvnIVQYTDLPIGIVPIINLEWIQKLHRDKKERGYAHEDVVHTILRRMPDYVNYICPQFSHTAV 204
                 **********************************9999************************************************************* PP

         PRK 187 iiqrvptvdvs 197
                 ++qrvp vd+s
  CCG91986.1 205 NFQRVPIVDTS 215
                 ********996 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.1e-06    0.0096       4      43 ..       7      46 ..       4      66 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.1e-06
                EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTT CS
  APS_kinase  4 vvwltGlsgsGKstianalekkLvekgisvylLdGdnvRh 43
                ++ +tG sg+G st+ +a+++  ++++i++ +++Gd   +
  CCG91986.1  7 IISITGSSGAGTSTVKVAFQHIFRREKINAFIIEGDAFHR 46
                6889********************************8755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.55
# Mc/sec: 1599.18
//
Query:       CCG91987.1  [L=356]
Description: fructose-1,6-bisphosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-53  180.8   0.0    2.4e-53  180.4   0.0    1.1  1  FBPase    Fructose-1-6-bisphosphatase, N-terminal domain
  ------ inclusion threshold ------
      0.088   13.1   0.0       0.17   12.2   0.0    1.4  1  NdhM      Cyanobacterial and plastid NDH-1 subunit M


Domain annotation for each model (and alignments):
>> FBPase  Fructose-1-6-bisphosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.4   0.0   2.7e-57   2.4e-53       2     189 .]       7     194 ..       6     194 .. 0.96

  Alignments for each domain:
  == domain 1  score: 180.4 bits;  conditional E-value: 2.7e-57
      FBPase   2 tltrfiveeqkeeanatgeltallsalklalkiisskvrkaelvnllGlagaeNvtGdeqkklDvladeiliealkaseevkvlvSEEeeelivl.ere 99 
                 tl++f++e+ ke a    el  l++ ++ a+k ++ +v ++ l n +    ++Nv+G+eqk lDv+a++i+ +  ++ ++++ +vSEE+e+  ++  ++
  CCG91987.1   7 TLSKFLLERRKEGA-IDPELASLINDIESACKYVAAAVSRGRL-NTMEVNVSVNVQGEEQKPLDVIANDIFLKICEEGDQLQGMVSEEMEQPYIIpPEH 103
                 9**********999.9**************************6.66788999***************************************99994456 PP

      FBPase 100 kegkyvvafDPlDGSSnidtnvsvGtifsiyrkksedeetti.dvlqpGkeqvAAgyvvYGsstmlVltlgaGvngFtlDpslgefiltke 189
                 k+gky ++fDPlDGSSn+d n++vG ifsi + +  +e+ ++  +l+pG+eqvAAg+++YG+  ml+lt+g+Gv+gFtlD++ g f+lt++
  CCG91987.1 104 KKGKYLLIFDPLDGSSNLDLNLTVGSIFSILKGPVGNEPLKEhHFLRPGREQVAAGFTLYGPTVMLILTVGNGVHGFTLDREVGIFTLTHP 194
                 89*********************************99999888*********************************************985 PP

>> NdhM  Cyanobacterial and plastid NDH-1 subunit M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.9e-05      0.17       6      94 ..     184     266 ..     181     270 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.9e-05
        NdhM   6 rhvrifaaevennelvesedkltldvdPdnefvWeeealkkvyekfdelvesyegedlteynlrriGsdlehfirkllqkGeisynles 94 
                 r v if+ +  n  +ves+++++  ++  ne  We      v+++ +e ++ ++g   +++n+r i s + ++ r l++ G   y  ++
  CCG91987.1 184 REVGIFTLTHPNMRIVESTKEFA--INASNERFWEPP----VKRYVEECIKGKTGPRGKDFNMRWIASMVAEVYRILIRGGLFMYPRDT 266
                 78889999989999999888875..678999999975....7888999******************************99999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2566.00
//
Query:       CCG91988.1  [L=535]
Description: Outer membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.1e-31  107.3   6.7    5.8e-23   81.7   0.5    2.7  2  OEP           Outer membrane efflux protein
  ------ inclusion threshold ------
       0.16   12.0   1.3       0.46   10.6   0.4    2.3  2  Exonuc_VII_S  Exonuclease VII small subunit


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   1.0   1.7e-10   1.5e-06       5     152 ..     111     277 ..     109     313 .. 0.87
   2 !   81.7   0.5   6.5e-27   5.8e-23       1     188 []     336     517 ..     336     517 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.7e-10
         OEP   5 lalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgtt...................svgltlsqplfdggkrrar 84 
                 +++ l++ p+lk+  a++  a a++++a + ++P+l+  +    ++n + g+ +  +  +                    ++gl + +p+fd  +++ +
  CCG91988.1 111 WKKILAHYPELKKKHAKLSEAIAQKALAESGYYPRLYGWADSLTSDNPILGFMMHLTERNFtaqdfnihnlnhpgtvsnqNAGLLAIFPIFDAMQTIDS 209
                 77899****************99999999999******9999999999987755544444499************************************ PP

         OEP  85 vkaakaqleaaeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlisl 152
                 vkaak  ++a e++ + +r +  l    a+ +ll a ++l  a  +l++++  l+ a ++ ++Gl+  
  CCG91988.1 210 VKAAKDAIKAREEEERYTRMEASLLSIDAWIGLLFADAELFKAMSQLEASKTDLNEALQLMEQGLVLG 277
                 ***************************************************************99765 PP

  == domain 2  score: 81.7 bits;  conditional E-value: 6.5e-27
         OEP   1 ldellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaql 99 
                 l+ +++ a+ +++dl+a++++i+ ++ ++k  k + +P+++  +s+  ++++ ++gg + +     vg+  ++ lfd ++r  ++k+aka+ e+   + 
  CCG91988.1 336 LSSWVQEAILYRSDLAALRHQIQVQRTEVKREKDSIMPNVNGFASGMLDSDNFTTGGRSYT-----VGVLGTMALFD-PSRDPKIKRAKAEEEQLIHEE 428
                 56799***************************************************99875.....99999******.********************* PP

         OEP 100 eqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                    ++++++++aqa  +l++a +  e++  +++ a +a+ +++++y+ G+ ++ d++qa+   lq++++++e+ + ++ ++a+L  l+g
  CCG91988.1 429 SVLKDNIQTKLAQAITDLETAYRDSEILYHSMNDAIQAIVMTRDLYREGRKTIADLIQARTYGLQVEISYLESVARYESSKAKLFFLSG 517
                 ***********************************************************************************988876 PP

>> Exonuc_VII_S  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   5.1e-05      0.46       6      35 ..     247     276 ..     245     278 .. 0.88
   2 ?   -2.8   0.0      0.76   6.8e+03      24      46 ..     500     522 ..     499     524 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_S   6 aeLeeIvekLEsgelsLeeslklyeeGvkL 35 
                   aeL +  ++LE  +++L e+l+l e+G  L
    CCG91988.1 247 AELFKAMSQLEASKTDLNEALQLMEQGLVL 276
                   57778889*******************765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.76
  Exonuc_VII_S  24 eslklyeeGvkLlkeCekkLdea 46 
                   es++ ye   + l +++ +Ld+ 
    CCG91988.1 500 ESVARYESSKAKLFFLSGQLDDY 522
                   79999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1088  (0.0606838); expected 358.6 (0.02)
Passed bias filter:                      688  (0.0383736); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.58
# Mc/sec: 2773.77
//
Query:       CCG91989.1  [L=1083]
Description: Cation/multidrug efflux pump [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.2e-141  470.9  11.5   2.3e-140  469.3  11.5    1.7  1  ACR_tran   AcrB/AcrD/AcrF family
    2.7e-05   23.7   9.2    2.7e-05   23.7   9.2    2.6  2  SecD_SecF  Protein export membrane protein


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  469.3  11.5  2.5e-144  2.3e-140       2    1020 ..      18    1062 ..      17    1063 .. 0.88

  Alignments for each domain:
  == domain 1  score: 469.3 bits;  conditional E-value: 2.5e-144
                  HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS- CS
    ACR_tran    2 ikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtd 98  
                  ikff + +i + +l l+ +llG +++ +lP ++ P+i  p  +v +s+pGasp++ve+++++  E+ + +++g++yv+S+   + +  ++ F+ g+d
  CCG91989.1   18 IKFFAHSKI-TPLLILASILLGSFALYQLPREEEPQIIVPIFDVFVSMPGASPQEVEKRIVTNGERIFWQISGVEYVYSTAAPNGALFIVRFKVGED 113 
                  566655555.55677888899************************************************************88888899******** PP

                  HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHHHC CS
    ACR_tran   99 idiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqklak 195 
                  +++   +   ++ +  + LP ++++p i+  + ++ +il l++ s   + ++ elr++++ n++d ++++  V++ ++iGg++++++i  dp+k+ak
  CCG91989.1  114 MEKSLIKLYTKIYSNLDYLPPGASTPLIKTRSIDDVPILALTFYSL--NRSPIELRKIVA-NLRDSINHLADVSETTIIGGRKRQFQIFFDPAKIAK 207 
                  **********************************************..899******986.8*********************************** PP

                  TT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEEETTSCEEEHHHCEEEEEEESSSSSEEEE........TTE......E CS
    ACR_tran  196 lgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivknqdgskvrlrDvAkVelgaeeerlaatf........ngk......p 278 
                    l+++++++ + + n ++++G++e + + ++++ ++ + s ed+e+++v+ ++g+ v+l+DvA++ +g ++e+  +++        + +      p
  CCG91989.1  208 RLLSPQEIFNLVLQTNIRMPSGHIETEPKLIDVEPNSFILSKEDLENLVVGVSQGQVVYLKDVANIVDGPDQEEKEVSLlpgpawdeK-EklsgevP 303 
                  *********************************************************************8877766543222222211.12333349 PP

                  EEEEEEEEETTSBHHHHHHHHHHHHHCCGGG.SSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  279 avllevkklpganaievakavkekleeLkes.lPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfa 374 
                  av l+  k++g+na   a+++  +++eL+ + lPe+v++v++ +  e+     +e  k   +aiv v + ++ F   +ra+l++ ia+P  l +t+ 
  CCG91989.1  304 AVTLSLAKRKGSNATFLANKILSTIKELQGKiLPEDVHYVITRNYGETAADKSNELLKHMGIAIVGVSILIW-FALGFRAALVVIIAIPTTLALTLL 399 
                  *****************************8769***************99999*******9**999998776.5556******************** PP

                  HHHHTT--BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HTS-H..HHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHH CS
    ACR_tran  375 vlkalgfslNlltLfgLvlAiGlvvDdAiVvvEnierklee.egekp..leaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltiv 468 
                    +++gf++N  tLf+L + iG++vDd iV +Eni+r+++  ++  +  l+ ++ +m+ei ++l+  ++ ++a+ lP++f+gG+ G   r++ +  +
  CCG91989.1  400 TFHLFGFTINRVTLFALIFTIGILVDDPIVGIENIVRHIHLaSNRGKllLNIVIGAMEEIVSPLILATMAVIAAILPMAFVGGLMGPYMRPIPIGAS 496 
                  ***************************************98433334779*********************************************** PP

                  HHHHHHHHHHHCCHHHHHHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH...HHHHHHHHHH..CS-BESS----TSE CS
    ACR_tran  469 laillsvlvaltltPalcallLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalv...llvlsvllfv..ripkeflPeedegv 560 
                   a++ s+lv+l +tP ++ llLk+ +e k+        +  + l+r Y+ +++ ++ +  +  l++l+   ll++s++l++   +  ++lP  ++ +
  CCG91989.1  497 AAMIFSMLVSLSVTPWAAHLLLKNIREAKD--------KGEDLLTRIYRTIMSPLIYNGFIRFLFLLLllaLLLGSIALIPlkVVRAKMLPFDNKNE 585 
                  ***************************997........567778888888888888876555554444000445566655322466789******** PP

                  EEEEEE-STTB-HHHHHHHHHHHHHHHHTTTTEEEEEEEECECS.SE...........ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTS CS
    ACR_tran  561 lvtsvqlppgvsleqtqkvlkqvekilkekpevesvfavtGfae.sgdt.........agpnsakvfisLkpekerkeeeksvealierlrkelkki 647 
                  +++++++p+g+++e+t++vl+q++k+  + +ev++v +++G++  ++++         ++p +++++++L ++++r   + ++++++e +rke+++i
  CCG91989.1  586 FQIILNMPEGTPVEKTREVLEQMAKVALNIKEVKNVEIQAGTHSpYNFNglvrhyflrENPYQGDLQVNLVDKHKR---KRQSHEIAESIRKEINAI 679 
                  ****************************************998766654333333333799*************99...888999*********999 PP

                  TSSEEEEEETTSSCCCSSSSCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHT CS
    ACR_tran  648 pganvellapiqlreletlsgvrselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalg 744 
                     + +  ++ ++        v s l   + g d ++ +++a +l +  +   +++d+ +  ++d p  +++id  k +  G+s + i + + tal 
  CCG91989.1  680 AWKEKAHAQVAEVPP---GPPVLSTLVLEVYGPDFKERRALALKLEQLFRDTAGITDIATYEEADRPLEKLDIDIVKSSLNGISSELIAQSITTALH 773 
                  988866666666655...667777777778******************************************************************* PP

                  TEEE..EEEEETTEEEEEEEEE-GGGSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HH..HHHHHHHHHC CS
    ACR_tran  745 gsyv..ndfieegrrvkvvvrleedlrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdsls..eaeeavekia 837 
                  gs     ++++e + v+++vrl+++ rs  +   ++ + +   +++p++++++   ++   si ++n ++++ ++++v + + +    + + ++k++
  CCG91989.1  774 GSSPglAHLQDEPEPVDIIVRLPKEDRSTDNPFLSISLLSRFMRLIPIDHLVTKVLGYQNLSIYHKNLMPVSYVLADVTNEVGSPvyAIIDFQKKLE 870 
                  *886226899999****************************************************************97654332112333333433 PP

                  TT..SSTT................EEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHH CS
    ACR_tran  838 kkvklpeg................vtiewtgqaeqeqeasnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsvia 918 
                   k++ p g                 +++w g+ +   e    l + +a+ l+l+f++    ++s++ p +++l +Pl+lvG l a +l+g+ +  ++
  CCG91989.1  871 -KITGPDGkpleilfthqpinplaWGVKWDGEWQVTYEVFRDLGTAFAIVLVLIFILVVGWFQSFKTPWAVMLPIPLSLVGILPAHWLTGMFFTATS 966 
                  .334444322222211112112216889********************************************************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  919 qvGlilliGlavkNaillvefakelrekegksleeaileaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPv 1015
                  ++G+i+  G++v+Nai+lv+f++   +  g +leea++ea+  R+rP+L+Ta ++i+G   +++       + q ++  ++ G + st+L+   vPv
  CCG91989.1  967 MIGMIAGAGIVVRNAIILVDFIELRLA-HGDKLEEAVIEAGAVRFRPMLLTASSVIVGSSVILF-----DPIFQGMALSLMAGEIASTILSRTAVPV 1057
                  **********************98888.6777**************************977776.....468999********************** PP

                  HHHHH CS
    ACR_tran 1016 lYvlv 1020
                  +Y+l+
  CCG91989.1 1058 FYYLI 1062
                  **997 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   9.2     3e-09   2.7e-05      32     171 ..     358     506 ..     338     524 .. 0.82
   2 ?   -1.4   7.7      0.14   1.3e+03      27     173 ..     906    1049 ..     901    1063 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3e-09
                 HHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHH..HHH--SS-HHHHHHHHH CS
   SecD_SecF  32 kavlallialvliliyvalrFewrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvren..lrkkkratlkeiinlsl 128
                 + +  ++ia+v++ i ++++   r al +iia+   + +t+  + l+g+ ++  t+ al+  iG  v+d +v  + +  +  l +++ + l +i+  ++
  CCG91989.1 358 ELLKHMGIAIVGVSILIWFALGFRAALVVIIAIPTTLALTLLTFHLFGFTINRVTLFALIFTIGILVDDPIVGIENIVRHihLASNRGKLLLNIVIGAM 456
                 5567789999**************************************************************9988877756888899999******** PP

                 HHHHHHHHHTTHHHHHHHHHHHHHHT.......TTTHHHHHHHHHHTSTT CS
   SecD_SecF 129 nqtLtrtiltslttllvvvallllgg.......dslkdfalallvGlivg 171
                 ++ ++  il+++ ++ +++ + ++gg        +  + ++a+++ ++v 
  CCG91989.1 457 EEIVSPLILATMAVIAAILPMAFVGGlmgpymrPIPIGASAAMIFSMLVS 506
                 ***********************999665444333334445555555544 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.14
                  HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHH.HHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHH CS
   SecD_SecF   27 kelaekavlallialvliliyvalrFewrvalaaiia.lvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlke 122 
                   e++++   a +i lvli+i v+  F+      a+++ +   ++ ++ +  l+g+ ++ +++++++   G  v + +++ d ++ +l +    +l+e
  CCG91989.1  906 YEVFRDLGTAFAIVLVLIFILVVGWFQSFKTPWAVMLpIPLSLVGILPAHWLTGMFFTATSMIGMIAGAGIVVRNAIILVDFIELRLAH--GDKLEE 1000
                  566777777888889999999998998876666666658899999**************************************988776..666777 PP

                  HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTT CS
   SecD_SecF  123 iinlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgty 173 
                  ++ ++    +   +lt  +  ++v + ++l + + +++al+l+ G i+ t+
  CCG91989.1 1001 AVIEAGAVRFRPMLLTASS--VIVGSSVILFDPIFQGMALSLMAGEIASTI 1049
                  7777776677666666555..344444555578888888888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1083 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1029  (0.0573931); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.49
# Mc/sec: 6653.92
//
Query:       CCG91990.1  [L=60]
Description: hypothetical protein MFUM_280010 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 426.57
//
Query:       CCG91991.1  [L=507]
Description: Prolyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-16   60.8   0.0    3.7e-16   59.1   0.0    1.9  1  ProRS-C_1       Prolyl-tRNA synthetase, C-terminal
    8.3e-14   52.0   0.0    1.7e-13   50.9   0.0    1.5  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    1.2e-11   44.6   0.1    2.3e-11   43.7   0.1    1.5  1  HGTP_anticodon  Anticodon binding domain


Domain annotation for each model (and alignments):
>> ProRS-C_1  Prolyl-tRNA synthetase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   6.2e-20   3.7e-16      11      69 .]     451     507 .]     443     507 .] 0.93

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 6.2e-20
                 T-EEEEEESSGHHHHHHHHHHHS-EEEEEESSB-SSCCCSB-TTT-SB-SEEEEEE-B- CS
   ProRS-C_1  11 kgfvlapWcgeeecEekIkeetgakslcipfdqepseegtkCivcgkpakkwvlfgrsY 69 
                 +gf+ a+W+g+ e+Eek+ke+ + +++cip+d  p+++   C ++g+p+k +vlf+++Y
  CCG91991.1 451 GGFAYAHWDGSRETEEKLKEDLKITIRCIPWD--PQNTPGICPFSGRPSKGRVLFAKAY 507
                 57*****************************8..4688899*****************9 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   2.8e-17   1.7e-13      10     176 ..     119     284 ..     113     287 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 2.8e-17
                   EEEE-SSSHHHHHHHHHHHEEEBGG.SSEEEEEEEEEEBTTTSTBCTTTB-SEEEEEEEEEEES.GGGHHHHHHHHHHHHHHHHHHTT.SCEEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  10 eyiLkPtneetfvelirdevlrskr.LPlklyqiqtkyRdEksdsrGLlRvreFhqkdgyvfha.easlddslrdlikaisriferlglefraiiel 104
                    ++++Pt+e+ + ++++ + ++s+r LPl + q   + R E +  r  lR  eF +++g+  ha  ++++++   ++k+++++ ++ +    +i + 
    CCG91991.1 119 PLVIRPTSETIIGAAFSRW-IQSYRdLPLLINQWANVVRWEMR-PRLFLRTTEFLWQEGHTAHAtREEAKEEALFILKLYEEFMRAYL-ALPVITGE 212
                   6899*************88.***766*****************.9*9*****************8899*************9888875.44566666 PP

                   ..GTTSCBTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEEEEEHHHHHHHHH CS
                   ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 105 ..msaksadykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksvimicaaigveRllsail 176
                      s+  + ++++  +ea+++  +k++++gt ++lg+++s++ ++++ld++++ ++  +   +++ +Rl++ ++
    CCG91991.1 213 kpESERFPGADNTFTLEALVQ-DRKAVQVGTSHFLGQNFSKANNIRFLDSQGKMEFAWTSSWGVS-TRLIGTLI 284
                   56555558999999******9.99*********************************99999988.99998765 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.1   3.8e-15   2.3e-11       1      87 [.     303     399 ..     303     409 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 3.8e-15
                     SEEEEESSSS...HHHHHHHHHHHHHHHHTTT.....SEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTC..EEEEEETT CS
  HGTP_anticodon   1 qvvviplnek...aeeleeyakklaeeLraag.....irvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtr..eqervsld 85 
                     qvv++pl +k   +++++++++ laee+++       irve+d+++   g k  e+ ++g+p+++++G +e+ +g +t+++rd++  e+e+++  
      CCG91991.1 303 QVVILPLFKKeeeKTKVLDVVNFLAEEIKKLSfaaepIRVEIDKREIGGGVKSWEWIKKGVPLRIEIGSQEVSSGLITLKRRDKGvkEKEQLPAH 397
                     8*********88866788************99***************************************************994444566555 PP

                     HH CS
  HGTP_anticodon  86 el 87 
                      +
      CCG91991.1 398 VF 399
                     55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3629.36
//
Query:       CCG91992.1  [L=95]
Description: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-13   50.8   0.2      2e-13   50.4   0.2    1.2  1  Glu-tRNAGln  Glu-tRNAGln amidotransferase C subunit
  ------ inclusion threshold ------
      0.079   11.5   0.0      0.079   11.5   0.0    1.0  1  AATase       Alcohol acetyltransferase


Domain annotation for each model (and alignments):
>> Glu-tRNAGln  Glu-tRNAGln amidotransferase C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.2   2.3e-17     2e-13       1      62 []      19      90 ..      19      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 2.3e-17
                 --HHHHHHHHHHHHHHHHHHTTCGCS--TT-.....---S......-EB-S--.....HHHHHTT-SSEETTEEEE CS
  Glu-tRNAGln  1 lseeEleklakelnsildyveqLqevdttgv.....eplthp....vlReDev.....reelLknApetedgyfvV 62
                 l+eeE++ + +++ sil+y+e+L+e+++++v     e          lReD +     +e++L+nAp+++++ f V
   CCG91992.1 19 LNEEEKKMFGEQFASILGYIEKLKELNIDDVvlkgeE----EgfknNLREDLPqeglaTEDVLRNAPHHANNLFIV 90
                 68**************************999555532....156679****4345889999*************98 PP

>> AATase  Alcohol acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.8e-06     0.079      58     108 ..      18      62 ..       8      87 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.8e-06
      AATase  58 kfpeheayyssdeyyskPfpkeDyvkviekiklddvvlneqpeyselleki 108
                   +e e+++ ++++ s       y+++++++++ddvvl    e   + +++
  CCG91992.1  18 SLNEEEKKMFGEQFASIL----GYIEKLKELNIDDVVLKGEEE--GFKNNL 62 
                 57999************9....9**************765555..444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 836.65
//
Query:       CCG91993.1  [L=483]
Description: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-153  512.2   0.0   1.5e-153  512.0   0.0    1.0  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  512.0   0.0  8.3e-158  1.5e-153       1     451 []      24     461 ..      24     461 .. 0.98

  Alignments for each domain:
  == domain 1  score: 512.0 bits;  conditional E-value: 8.3e-158
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkT 99 
                 e++ea+++ri++v++k+na++++  e a+++A++++ +        pL G+Pi++KDni+v+  p+ ++sk+le+y ++++atv+e+L kaGa+++g+T
  CCG91993.1  24 EVTEALFSRIAEVEPKINAYNYLNHERAIERAKNVNVDL-------PLGGIPIAIKDNINVRAEPCRCASKILEGYLSPYNATVIEKLTKAGAIPVGRT 115
                 79**********************************886.......9**************************************************** PP

                 --SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHH CS
     Amidase 100 nmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsve 198
                 nmdefamgsstens++g t+NPwd++r+pGGSSGGsAAavA++ +  a+G+DtGGSiR+PAsfcg+vGlKPtygrvSr+g++a++ssld++Gpl+++ve
  CCG91993.1 116 NMDEFAMGSSTENSATGLTKNPWDLQRVPGGSSGGSAAAVASHEAFCALGSDTGGSIRQPASFCGCVGLKPTYGRVSRYGLTAFASSLDQIGPLTKTVE 214
                 *************************************************************************************************** PP

                 HHHHHHHHHBS--TT-TTS----HHHHHHHHCTT-.--TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHHHHHH CS
     Amidase 199 dlalllrvilgedpkdstssvipeesedlaeelkk.slkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyylilvaea 296
                 d+alll+vi+g dp d ts ++p  ++ ++e l++ slk+++ Gv+ke++ + +d ev++a++ka+++ e++G++++ev+lp+ ++a+++yy++++aea
  CCG91993.1 215 DAALLLEVISGFDPYDNTSEKMP--VPRFSELLETlSLKNMVLGVPKEYFIEGIDGEVREAINKAIAHFESLGAKIEEVSLPHTPYAVATYYILATAEA 311
                 *********************77..6677776654389************************************************************* PP

                 HHHTTT-SSSSS.---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCCCCH CS
     Amidase 297 ssnlarylgvry.erlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlgekdk 394
                 s+nlar++g+ry +r ++ ++l +++ k+r+e++g+evkrri lg+y+ls++++++yyl+a kv++ ++++f  +f+++ +ll+Pt+p  a+r+gek+ 
  CCG91993.1 312 SANLARFDGIRYgRRSKHYEDLLDYYGKTRDEGFGSEVKRRILLGTYVLSSGYYDAYYLRALKVKEKIKQDFSSVFKKCQALLTPTSPFCAFRIGEKS- 409
                 *************************************************************************************************9. PP

                 HHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHHH CS
     Amidase 395 tidsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetlL 451
                   ++++ +y+ + ft   + vnlag   ls+p+g+s +glP+G+q+ig+a++ee +L
  CCG91993.1 410 --NDPLQMYLADIFT---IAVNLAGICGLSIPCGQSTEGLPIGLQIIGPAWKEEVIL 461
                 ..79***********...******************99***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3425.63
//
Query:       CCG91994.1  [L=485]
Description: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-108  362.2   0.0   2.2e-108  361.8   0.0    1.2  1  GatB_N     GatB/GatE catalytic domain
    4.2e-40  137.0   2.4      7e-40  136.3   2.4    1.4  1  GatB_Yqey  GatB domain
  ------ inclusion threshold ------
      0.023   14.7   0.1      0.052   13.6   0.1    1.5  1  PHD_like   Antitoxin of toxin-antitoxin, RelE / RelB, TA syst


Domain annotation for each model (and alignments):
>> GatB_N  GatB/GatE catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.8   0.0  3.7e-112  2.2e-108       2     272 ..       6     297 ..       5     298 .. 0.97

  Alignments for each domain:
  == domain 1  score: 361.8 bits;  conditional E-value: 3.7e-112
                 EEEEEEEEEB--SB-SSSSSBSSSSCESTTSS--TTTTTSTT..--EEHHHHHHHHHHHHHTTEEE-SEE-EEEEE-TCTTCTTSEEEEESSS.SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N   2 viGlEiHaqlktksKlFssasteeegeepnsevsevdlalPGtlPvlnkeavelaikaalalnceiaeeskfdRKnyfypdlpkgyQitqkeeplakeG 100
                 +iGlE+H+qlkt++KlF++++  e+g  pns+v++++l+lPG+lP +nk+a+ l+i+++l+l++eia++ kfdRKnyfypd+pk+yQi+q+++pl+k+G
  CCG91994.1   6 IIGLEVHVQLKTQTKLFCGCPV-EYGVLPNSRVCPICLGLPGALPSPNKQAIILTIQTGLMLGSEIAPRGKFDRKNYFYPDMPKNYQISQYDQPLCKGG 103
                 7********************6.59*9************************************************************************ PP

                 EEEE.................TEEEEEEEEEEEE---EEEEEETTEEEEETTSTT-EEEEEEE-STB-SHHHHHHHHHHHHHHHHHHTSB--SGGGTTE CS
                 xxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N 101 slel.................ekkvrierihlEeDaaksvheekeeslvdlnRaGvpLiEivtepdlrspeearavveklrellralgvsdgnmeeGsl 182
                 ++el                 +kk+r+ rihlEeD +ks h e+ +s +d+nRaG+pL+Eiv+e+d+rspeea a++++lr++lr+ +vsd++me+G+l
  CCG91994.1 104 AVELyplafpkdaqkdpqaqsRKKIRLVRIHLEEDVGKSFHFED-HSGIDFNRAGTPLMEIVSEADIRSPEEAFAYLTALRQILRYGNVSDCDMEKGQL 201
                 ******************9999999****************877.9***************************************************** PP

                 EEEEEEEECTSETTSSS..--EEEEEE-SHHHHHHHHHHHHHHHHHHH.......-EEEEEETTTTEEEEECC----...-EEE-TTS--EE--HHHH CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N 183 RcDvNvSvreeekgeee.gtrvEiKnlnslksiekaieyeierqiell.......qeTrkfdedkgetvslRskeeaedYryfpepdlppleiseeli 272
                 RcDvNvSv+  + ge + gt++EiKnlns+++++ka++yei+rqi++l       qeT ++d+ kg+t+ +R+ke a+dYryfp+pdl ++  + eli
  CCG91994.1 202 RCDVNVSVK--PIGEGKwGTKCEIKNLNSISAVRKALKYEIQRQIHILqlggeisQETLRWDDLKGQTFPMRTKEYAHDYRYFPDPDLLTILTEGELI 297
                 *********..5577778************************************************************************99888877 PP

>> GatB_Yqey  GatB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   2.4   1.2e-43     7e-40       1     148 []     337     481 ..     337     481 .. 0.98

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 1.2e-43
                 HHHHHHHHHSS.HHHHHHHHHTCHHHHHHHHTXXTTCSSTTHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHHTXXHHHHHHHCTXXXXXXSSXHHHHHH CS
   GatB_Yqey   1 dffeevvkegadaklaanwllnellgelnkegleieelkltpeqlaellkliaegkIskkiakevleelleegkspeeiieekgLkqisdeeeleklve 99 
                 dffe++++++a++ ++an l+n+ l+ + + + +i    ++pe + el +l+++gk+  k+ake+++ +++e+ksp  i+eekg+ qi++ + l ++++
  CCG91994.1 337 DFFEKAAAQSANKVSVANFLINDYLAVVSESETAIP---IPPEYFSELSNLVDQGKLHMKQAKEIVKLMVTEKKSPTLIVEEKGFAQITSLDTLDAICK 432
                 89*****************************97776...5*********************************************************** PP

                 HHHHTXHHHHHHHTTXXTTSTHHHHHHHHHTTSSXSXHHHHHHHHHHHS CS
   GatB_Yqey 100 eviaenpkavedyksgkekalkflvGqvMkktkGkadpklvnellkekL 148
                 e+i++npk+v+dy+sgk+ a++++ G vMkktkG+a+pk+v ell++kL
  CCG91994.1 433 EAIEANPKSVADYRSGKTAAINAIKGYVMKKTKGQANPKIVHELLEKKL 481
                 ***********************************************98 PP

>> PHD_like  Antitoxin of toxin-antitoxin, RelE / RelB, TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   8.6e-06     0.052      22      99 ..     404     478 ..     387     480 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.6e-06
                 HHT.--EEEEETT..EEEEEEEHHHHHHHT...TT--EEEEEEEETTEEEEEECCGTEEEEESSHHHHHHHHHHHHHH CS
    PHD_like  22 vkeykpvlvkrnrkkekvsiistdllkelldrgyklepeieeekdgevytltldelevyvegstkeeaaedLvedlld 99 
                  ++ +p+l+ +   k    i s d l+ +++++ + +p+   +  +   t+++++++ yv  +tk +a  ++v++ll+
  CCG91994.1 404 TEKKSPTLIVEE--KGFAQITSLDTLDAICKEAIEANPKSVADYRSGK-TAAINAIKGYVMKKTKGQANPKIVHELLE 478
                 333456666664..478899************************9999.**************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.47
# Mc/sec: 3092.84
//
Query:       CCG91995.1  [L=598]
Description: N-acetylglucosamine kinase fused to sugar phosphate isomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.2e-24   84.5   0.0    1.6e-23   83.5   0.0    1.4  1  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
    1.4e-08   34.8   0.1    2.7e-08   33.9   0.1    1.5  1  SIS_2        SIS domain
      2e-07   30.9   0.1    3.2e-06   27.0   0.0    2.2  2  SIS          SIS domain


Domain annotation for each model (and alignments):
>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0   2.7e-27   1.6e-23       1     236 [.       5     264 ..       5     273 .. 0.91

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 2.7e-27
                  EEEEE-SSEEEEEEEETTTE.EEEEEEE--TTS-HHH.........HHHHHHHHHHT--GGGECEE..EEESTTCCCTCTTBSEEE-........... CS
  BcrAD_BadFG   1 vGiDgGsTttkavlmdekge.vlgrgitnsanlesvrfeaaekvleealtealerageeeadieetylvgtgyGratlpekfekeiirs......... 88 
                  +Gi gG+T t+ ++++e++  v+++g  +  n++        + l+  ++ + e+ + e   i+++  +++g    +++ k+ +eiirs         
   CCG91995.1   5 LGIEGGGTHTRWIVLEEEKGgVVAKGSEGVGNVHLLT----TSELVSLFQSIKEKVRVE---IKQIGAGFAGCHSEKEK-KILEEIIRSvwpestkvi 94 
                  7***********9999888768888888888888665....68999***********99...66666789999888887.7999***********887 PP

                  .HHHHHHHHHHHH-TT--EEEEEETTEEEEEEEETTEEEEEEEESS--TTSHHHHHHHHHHHT--TTTHHHHHTT--..................... CS
  BcrAD_BadFG  89 .eilvhgdGavalypgtrtvldigGqdskgiqidkgkvenfqmndrcaageGrylgiiadelnmglreldglaekat..................... 164
                     ++ +  a a++p+++++l+i+G++s +i+++ g+ e+ +++++ +++ G++++i+++ l+    + d  ++ +                      
   CCG91995.1  95 iAEDTRTAYARAFAPDQEGILVIAGTGSNVIGYKAGIWEKAGGWGQ-LGDPGSGYRIGREGLERIYLDFDLTKNVSAlaqaflrqscrndmddflsyv 191
                  66677777789999*******************************8.7*********************98888888999****************** PP

                  .S-------SHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH CS
  BcrAD_BadFG 165 .kkarinstcavfaeaelrdalsggekaedIlaglhraialrvialisrsggvtdevtltGGvakneaavkel 236
                    + +++  +a fa+ +l++a++g e++ +I++  ++ + lrv  +++r+g +++ + l+GG+++n+ ++ +l
   CCG91995.1 192 lPSFAKKDFIASFAPIVLSMAEQGEESSFEIVNREASMLGLRVQIVARRLGLTNPRIALVGGLFENSSFYTTL 264
                  97778999**********************************************************9888766 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.1   4.6e-12   2.7e-08      10     133 ..     351     475 ..     344     479 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 4.6e-12
                 HHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST.....THHHHHTT-TTHHHHHHHHTT--TT- CS
       SIS_2  10 lerivetqaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaragglaeferialpalalhtda...eatkssalerdegyakqilrlvrlkpgD 105
                 ++++ e+   +i++a+++  + le+gg+++  G+G S  l    a ++   +++ + + +a++           +  + +  eg+ +++ r   + ++D
  CCG91995.1 351 VQQALEKCRREIAEAVAATSSILEKGGRLFYVGAGTSGRLGALDASEMPPTFNVSPEMVQAIMAGGADalwRSMEGIEDSSREGFKSIFNRG--VTSKD 447
                 6777899999***************************8887777888888999999888888886643344444445555679999999999..***** PP

                 EEEEE-SS--SHHHHHHHHHHHHHT-EE CS
       SIS_2 106 vLlviSnsGnnavvveaaeaakergmkv 133
                 +   i +sG+ + v++a+eaak++g+k+
  CCG91995.1 448 MVCGITASGRTPFVIAALEAAKTIGAKT 475
                 **************************97 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.047   2.8e+02       2      20 ..     373     391 ..     372     398 .. 0.84
   2 !   27.0   0.0   5.3e-10   3.2e-06      51     128 ..     443     522 ..     435     525 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.047
                 HCTSSEEEEEESHHHHHHH CS
         SIS   2 LakakriyvlGaGtsyaia 20 
                 L k  r++++GaGts+ ++
  CCG91995.1 373 LEKGGRLFYVGAGTSGRLG 391
                 56677**********9776 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 5.3e-10
                 -STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEEEECHC..SSSHCHHHHHHHHHHHHH CS
         SIS  51 ideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlalyinaepet..lvastksltaqlaaldal 128
                 ++++d v  i+ sg+t+ ++aa+e ak  gak++++ ++++ p + +adla++++++pe+  +   +k+ ta+ ++l++l
  CCG91995.1 443 VTSKDMVCGITASGRTPFVIAALEAAKTIGAKTLLLSCNPSRPPCPYADLAIDLPTGPEIiaGSTRLKAGTATKIVLNML 522
                 7899********************************************************55555567777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 3874.75
//
Query:       CCG91996.1  [L=691]
Description: DNA ligase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.6e-117  390.4   0.0   7.9e-117  389.9   0.0    1.2  1  DNA_ligase_aden  NAD-dependent DNA ligase adenylation domain
      7e-34  115.6   0.6    1.2e-33  114.8   0.6    1.4  1  DNA_ligase_OB    NAD-dependent DNA ligase OB-fold domain
    1.7e-24   85.7   0.3    2.1e-21   75.8   0.1    2.7  2  HHH_2            Helix-hairpin-helix motif
    1.2e-16   60.8   0.0    2.5e-16   59.8   0.0    1.5  1  BRCT             BRCA1 C Terminus (BRCT) domain
      5e-16   59.1   0.4      8e-09   36.0   0.2    2.5  2  HHH_5            Helix-hairpin-helix domain
    3.3e-06   27.0   0.0    8.3e-06   25.7   0.0    1.7  1  PTCB-BRCT        twin BRCT domain
    6.5e-05   22.6   0.0    0.00035   20.3   0.0    2.3  2  HHH              Helix-hairpin-helix motif
    0.00022   21.4   1.4     0.0027   17.9   0.1    3.2  3  HHH_3            Helix-hairpin-helix motif
      0.004   16.9   0.8       0.06   13.1   0.4    2.7  2  RNA_pol_A_CTD    Bacterial RNA polymerase, alpha chain C term
      0.007   16.4   0.3      0.016   15.2   0.3    1.7  1  DNA_ligase_ZBD   NAD-dependent DNA ligase C4 zinc finger doma


Domain annotation for each model (and alignments):
>> DNA_ligase_aden  NAD-dependent DNA ligase adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  389.9   0.0  4.4e-120  7.9e-117       2     318 .]      30     343 ..      29     343 .. 0.98

  Alignments for each domain:
  == domain 1  score: 389.9 bits;  conditional E-value: 4.4e-120
                      HHHHHHHHHHHHHHHHHHHHHCTT-SSC-HCHHHHHHHHHHHHHHHSGGG--TTSCCG-SSSS--CTS-EEE-SS-----EEE-SHHHHHHHHH CS
  DNA_ligase_aden   2 eakkeleelrellrkydyeYyvldePlvsDaeyDrllkelkelEekfPelitpdSPtqrvgaeleaefkkveHeapllSLdnafdedelkafle 95 
                      e+kk+ +el +l++kyd++Yyv++ Pl+sD eyD+l++el+++E+ +PelitpdSPtqr+g+++++ f++v+H++p+lSL+n+++++el afle
       CCG91996.1  30 EIKKRHDELVKLIQKYDHAYYVEARPLISDQEYDNLYHELETIEKLHPELITPDSPTQRIGESPLSGFSQVSHQVPMLSLENTYSKEELFAFLE 123
                      68999***************************************************************************************** PP

                      HHHHHSSS--S-EEEEEEEESSEEEEEEEETTEEEEEEE-TTSSEEEB-HHHHCT-TTS-SB-SSSS--SEEEEEEEEE--HHHHHHHHHHHHH CS
  DNA_ligase_aden  96 rieealgnkekvayvvelKiDGlavsllYengvlvraatRGdGttGedvtaNvktiksiPlklkvdnlpeelevRGEvylrkedFeklNeerle 189
                      ri+++l+ k+ + ++ve+K+DG+++s++Y+ng++  +atRG+Gt+G+d+t+N+kti+s+Pl+l+++n+pe le+RGE+y++ +dFeklN+er++
       CCG91996.1 124 RIRRSLPGKK-ISFTVEPKVDGISISVIYKNGLFSLGATRGNGTMGDDITQNLKTIHSLPLRLNMENPPELLEIRGEAYMSLKDFEKLNAEREK 216
                      ******9998.8********************************************************************************** PP

                      CT----SSHHHHHHHHHT-SSHHHHHTS--EEEEEEEEEEESS---.SBHHHHHHHHHHCT--B-TT-EEECSHHHHHHHHHHHHHHGGGSSS- CS
  DNA_ligase_aden 190 egeklfaNpRNaAaGslRqldpkitakrkLkliayglglvekeelevktqsealkvlkklglkvseelklvksieevleyieelekkRdeleye 283
                      eg++lfaNpRNa aGsl+qldp+i+a+r+L +++yg g++++   e+ktq e l +lkk+g+++  ++  +k+ +ev e   +l++ R++l+y 
       CCG91996.1 217 EGKPLFANPRNATAGSLKQLDPRIVAQRPLAVVFYGGGQLKG--FECKTQVEWLLFLKKIGIPIPVRFWHCKDENEVYEATCTLQEIRSDLPYP 308
                      **************************************9888..7888********************************************** PP

                      EEEEEEEESBHHHHHHH-EETSCESSEEEEE---C CS
  DNA_ligase_aden 284 iDGvVvkvdelalqeeLGftakaPrwAiAyKfpae 318
                      +DG  +kv+e +++  LG+takaPrwA AyK+ ae
       CCG91996.1 309 TDGAAIKVNEWEYYPILGYTAKAPRWAFAYKYGAE 343
                      ********************************885 PP

>> DNA_ligase_OB  NAD-dependent DNA ligase OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   0.6   6.8e-37   1.2e-33       2      78 ..     347     423 ..     346     424 .. 0.98

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 6.8e-37
                    --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  DNA_ligase_OB   2 tkledievqVGRtGaltpvAeLepvelaGttVsratLhnedeierkdirigdtVvvekaGdvIPevvgvvlekreee 78 
                    t+l ++ +qVGR+G +tpvAe++pv l+GttVsratLhn+d+i+r+d+++gd+V+vekaG+vIPevvgv++++r+++
     CCG91996.1 347 TRLIQVIFQVGRSGIITPVAEMDPVFLSGTTVSRATLHNFDQIKRLDVKVGDYVFVEKAGEVIPEVVGVDTSQRTGK 423
                    99************************************************************************986 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0028         5       5      62 ..     470     529 ..     466     530 .. 0.86
   2 !   75.8   0.1   1.1e-24   2.1e-21       1      62 [.     532     593 ..     532     595 .. 0.98

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0028
       HHH_2   5 aLGIrhVGektAklLakr..FksldaLkkasleeLlevddiGeeiAqsivefFeneknre 62 
                 aL I   Ge+   +L+ +   k++  L + ++++L++++  G++ Aq+  + +e++k r+
  CCG91996.1 470 ALDIQGLGESLVDQLVDKglVKDIADLYDLDEKTLVSLERMGKKSAQNLLQSLEESKKRD 529
                 5777888888888888764468999**************************999998876 PP

  == domain 2  score: 75.8 bits;  conditional E-value: 1.1e-24
       HHH_2   1 rllfaLGIrhVGektAklLakrFksldaLkkasleeLlevddiGeeiAqsivefFeneknre 62 
                 rl+f+LGI h+G+k++++La+ F+s+d+L++as+eeLl+++ iGe++A+siv++F++ knre
  CCG91996.1 532 RLIFGLGITHIGQKASEELARYFGSMDRLANASEEELLAIPFIGEIMAKSIVSYFRKAKNRE 593
                 79**********************************************************98 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   1.4e-19   2.5e-16       3      79 .]     614     687 ..     612     687 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 1.4e-19
                 TTTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT   3 ellfhgckfvitgvldnftrdeleelikehGGkvttevskktthlvvgepesrslkylealklnipivheewlldci 79 
                 + +++g++fvi ++  +++r+++  +i++ GG+v++ vs+kt++lvvg +   ++k+ ea+kl+ipi++e++l++++
  CCG91996.1 614 SGPLNGKTFVI-TGTLSEPRESIIAKINSKGGRVSNTVSRKTNYLVVGAN--PGSKLHEAKKLGIPIMSEQELFHLL 687
                 679********.999999********************************..99*******************9875 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.2   4.5e-12     8e-09       4      56 ..     470     523 ..     467     524 .. 0.94
   2 !   20.7   0.0   2.6e-07   0.00046       5      53 ..     537     584 ..     533     588 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 4.5e-12
                 HHTSTT--HHHHHHHHTTT.--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHHH CS
       HHH_5   4 LlsvsGiGpktAlallsaG.iesvedlaaadveeLakipGiGkktAeriilelk 56 
                  l+++G+G++++  l+++G ++ ++dl ++d+++L ++  +Gkk A++++++l+
  CCG91996.1 470 ALDIQGLGESLVDQLVDKGlVKDIADLYDLDEKTLVSLERMGKKSAQNLLQSLE 523
                 689***************98******************************9997 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 2.6e-07
                 HTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHH CS
       HHH_5   5 lsvsGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriil 53 
                 l++  iG k    l++  ++s + la+a++eeL +ip iG+  A++i+ 
  CCG91996.1 537 LGITHIGQKASEELARY-FGSMDRLANASEEELLAIPFIGEIMAKSIVS 584
                 67899************.*****************************96 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   4.6e-09   8.3e-06       5      60 ..     624     679 ..     621     681 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 4.6e-09
                 EECB-TTCHHHHHHHHHHTT-EEESSEETT-SEEEECSS-CHHHHHHHHCT-EEE- CS
   PTCB-BRCT   5 vtgysgddrkslqklieamGaeyskdltksvTHLicksgeGekyekAkkwgipvVs 60 
                 +tg  ++ r+s+   i++ G+ +s ++++++ +L++    G+k + Akk gip++s
  CCG91996.1 624 ITGTLSEPRESIIAKINSKGGRVSNTVSRKTNYLVVGANPGSKLHEAKKLGIPIMS 679
                 67777788**********************************************87 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.3   5.9e+03      11      28 ..     502     519 ..     497     520 .. 0.77
   2 !   20.3   0.0   1.9e-07   0.00035       2      30 .]     557     585 ..     556     585 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.3
                 HHHHTSTT-SHHHHHHHH CS
         HHH  11 eeLlalPGVGpktAeaIl 28 
                 + L++l+  G+k A+  l
  CCG91996.1 502 KTLVSLERMGKKSAQNLL 519
                 567777778999999766 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 1.9e-07
                 HHHHHTSSHHHHHTSTT-SHHHHHHHHHH CS
         HHH   2 leglipasreeLlalPGVGpktAeaIlsy 30 
                  ++l +as+eeLla+P +G+ +A +I sy
  CCG91996.1 557 MDRLANASEEELLAIPFIGEIMAKSIVSY 585
                 6899***********************98 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.1   3.7e+03      48      61 ..     472     485 ..     463     487 .. 0.75
   2 ?   -0.0   0.1      0.61   1.1e+03      15      34 ..     503     522 ..     499     554 .. 0.60
   3 !   17.9   0.1   1.5e-06    0.0027      10      53 ..     562     602 ..     559     604 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.1
       HHH_3  48 kvkglgpktfeqla 61 
                 +++glg+  ++ql 
  CCG91996.1 472 DIQGLGESLVDQLV 485
                 68888888888875 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.61
       HHH_3  15 eLqklpGlgpklAknIvayR 34 
                  L  l+ +g+k A+n+++  
  CCG91996.1 503 TLVSLERMGKKSAQNLLQSL 522
                 56666777777777766544 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 1.5e-06
       HHH_3  10 tAsaeeLqklpGlgpklAknIvay.ReknGpfksreeLlkvkglg 53 
                  As+eeL  +p++g+ +Ak Iv y R    + k+re L k +++g
  CCG91996.1 562 NASEEELLAIPFIGEIMAKSIVSYfR----KAKNRERLEKFRKIG 602
                 69********************9835....888999999988887 PP

>> RNA_pol_A_CTD  Bacterial RNA polymerase, alpha chain C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.4   3.4e-05      0.06      33      67 .]     490     524 ..     486     524 .. 0.93
   2 ?    0.5   0.0      0.29   5.2e+02      38      55 ..     559     576 ..     555     583 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.4e-05
                    --BHHHHHHS-HHHHTTSSS-SSHHHHHHHHHHHH CS
  RNA_pol_A_CTD  33 iktvgeLvklseeeLlkikNlGkKSleEIkekLee 67 
                    +k +++L +l+e+ L +++ +GkKS + + + Lee
     CCG91996.1 490 VKDIADLYDLDEKTLVSLERMGKKSAQNLLQSLEE 524
                    57799************************999986 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.29
                    HHHHS-HHHHTTSSS-SS CS
  RNA_pol_A_CTD  38 eLvklseeeLlkikNlGk 55 
                     L++ seeeLl+i+ +G+
     CCG91996.1 559 RLANASEEELLAIPFIGE 576
                    58999********98885 PP

>> DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.3   8.8e-06     0.016       2      27 .]     433     456 ..     432     456 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.8e-06
  DNA_ligase_ZBD   2 CPvCGsavvReegeaiyRCtnlsCpA 27 
                     CP+CG ++    ++  +RC n +CpA
      CCG91996.1 433 CPSCGEKLF--WEGIFLRCGNENCPA 456
                     ********6..55677*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4626.95
//
Query:       CCG91997.1  [L=223]
Description: LysM domain containing protein (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-12   46.4   0.0      6e-12   45.4   0.0    1.5  1  LysM          LysM domain
    0.00016   22.1   2.8     0.0003   21.1   2.8    1.5  1  ZapB          Cell division protein ZapB
    0.00053   19.6   0.4    0.00067   19.3   0.4    1.1  1  Exonuc_VII_L  Exonuclease VII, large subunit
     0.0011   19.0   1.1     0.0017   18.4   1.1    1.2  1  Rootletin     Ciliary rootlet component, centrosome cohesion
     0.0022   18.4   1.6     0.0041   17.6   1.6    1.5  1  NPV_P10       Nucleopolyhedrovirus P10 protein
     0.0042   16.2   4.1     0.0049   16.0   4.1    1.1  1  Atg14         Vacuolar sorting 38 and autophagy-related subun
     0.0085   16.6   2.9      0.015   15.8   2.9    1.4  1  AAA_23        AAA domain
      0.009   15.8   5.8       0.19   11.5   4.9    2.5  2  DivIC         Septum formation initiator
  ------ inclusion threshold ------
       0.01   16.2   4.7      0.024   15.0   4.7    1.5  1  FlaC_arch     Flagella accessory protein C (FlaC)
      0.018   14.9   0.6      0.025   14.5   0.6    1.2  1  DUF3877       Domain of unknown function, E. rectale Gene des
      0.023   14.7   2.5      0.039   14.0   2.5    1.4  1  DUF1664       Protein of unknown function (DUF1664)
      0.025   14.7   1.9      0.047   13.8   1.9    1.4  1  TssO          Type VI secretion system, TssO
      0.028   15.0   2.9      0.039   14.6   2.0    1.7  2  YabA          Initiation control protein YabA
      0.053   13.6   1.0        0.1   12.7   0.9    1.5  1  DUF2443       Protein of unknown function (DUF2443)
      0.088   10.6   3.7       0.11   10.3   3.7    1.0  1  Nup88         Nuclear pore component
        0.1   12.4   3.4       0.88    9.4   1.6    2.1  2  MCPsignal     Methyl-accepting chemotaxis protein (MCP) signa
       0.11   12.8   3.9       0.28   11.5   3.9    1.7  1  BLOC1_2       Biogenesis of lysosome-related organelles compl
       0.11   11.3   6.8       0.17   10.8   6.8    1.2  1  Spc7          Spc7 kinetochore protein
       0.12   12.7   5.1       0.22   11.9   5.1    1.4  1  CC2-LZ        Leucine zipper of domain CC2 of NEMO, NF-kappa-
       0.17   12.6   1.7       0.38   11.4   1.7    1.6  1  SlyX          SlyX
       0.28   11.1   4.6       0.21   11.5   2.4    1.9  2  AAA_lid_9     AAA lid domain
       0.33   11.4   3.7       0.31   11.5   0.8    2.4  2  LPP           Lipoprotein leucine-zipper
       0.59   10.2   2.5        1.3    9.1   1.4    1.9  2  MCU           Mitochondrial calcium uniporter
        2.8    8.3   7.5       0.49   10.8   2.2    2.1  2  CCDC-167      Coiled-coil domain-containing protein 167


Domain annotation for each model (and alignments):
>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0     8e-15     6e-12       1      44 []     151     199 ..     151     199 .. 0.99

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 8e-15
                 EEE-TT--HHHHHHHC.....TCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM   1 YtVkkGDTLwsIAkry.....gitveklleaNnlsspdkifpGqkLkiP 44 
                 Y+Vkk+DTL+sIA++y     ++t e++++ Nnlss+  +++G+kL iP
  CCG91997.1 151 YVVKKNDTLESIADAYrksgvNVTAEDIRKSNNLSSHSPLEVGSKLFIP 199
                 9***********************************************9 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   2.8   4.1e-07    0.0003       4      52 ..      71     119 ..      69     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 4.1e-07
        ZapB   4 elLeqLEskiqkaidtitlLqmeieeLkeeneelkeenreleeeneqlk 52 
                 ++L+qLE+ +++   +i++ ++ei++Lke++++l++ +++++   ++++
  CCG91997.1  71 DILDQLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKDIEKIKIATSKER 119
                 79*************************************9996666655 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.4     9e-07   0.00067     173     299 ..      52     178 ..      16     182 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 9e-07
  Exonuc_VII_L 173 klasrl..kspeellerkrqrldeleerleralkkqlkkkrerleelkerl.kekleekkerlkklkerlelleekkerleeleeklealsplkvLk 266
                   ++a++l  ++ +++l r+ + ld+le+++e+  + ++++ +e++++lke++ + + + +k ++++ kerl+  ++ k+  ++++ek +    +++ +
    CCG91997.1  52 TIAKKLegEEERKKLLRAVDILDQLEQNVEA-NSFNIQAIKEEIRKLKEQVnSLEKDIEKIKIATSKERLS-PSNPKKGNAAVSEKAHRGATTQLVE 146
                   4455553224444555666667777777766.455566666666666644422111222222344555666.55555555779999999999***** PP

  Exonuc_VII_L 267 rGyaivrkedgkvvtsakdlkkgdeleirladg 299
                   +Gy +v k ++ +++s++d+ +++ ++++ +d 
    CCG91997.1 147 KGYYYVVK-KNDTLESIADAYRKSGVNVTAEDI 178
                   *******8.699*********999999998885 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.1   2.3e-06    0.0017      62     129 ..      43     112 ..      30     124 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.3e-06
   Rootletin  62 eeeesadleealakLeeErqrseklaqvnsl..LreqleearqaneaLtedlqkltkdwerlreeleqke 129
                 +++++a++ ++ +kLe E +r + l +v  l  L +++e+ + + +a++e+++kl++++++l++++e+ +
  CCG91997.1  43 QDDQNAETPTIAKKLEGEEERKKLLRAVDILdqLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKDIEKIK 112
                 678999999*******999999988888754215555555555559******************998755 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.6   5.5e-06    0.0041      19      65 ..      69     115 ..      61     126 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.5e-06
     NPV_P10  19 kVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiL 65 
                  Vd l+q  ++v++n+ +++ ++e++ ++ +q+++le+ +e+I+   
  CCG91997.1  69 AVDILDQLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKDIEKIKIAT 115
                 699999999**********************************8554 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   4.1   6.5e-06    0.0049      36     102 ..      48     120 ..      40     197 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.5e-06
       Atg14  36 sekeslkkkiekalegke......eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkk 102
                 +e  ++ kk+e ++e+k+        +qle++++ ++ +++ +k +i++l+e+++ l++++++ k ++ + + 
  CCG91997.1  48 AETPTIAKKLEGEEERKKllravdILDQLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKDIEKIKIATSKERL 120
                 566677788888888888888888999**********************************999877766664 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   2.9     2e-05     0.015     132     200 .]      29     109 ..      11     109 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2e-05
      AAA_23 132 lnlilflgqerfeefelkdkkerleelekeleeledekkllekl..............eqekekekeleeleeeleeilkele 200
                 +++++f  +     f++ d++ +   + k+le +e++kkll+++               +++  ++e+ +l+e+ ++++k++e
  CCG91997.1  29 FPFLFFSSSAPL--FSQDDQNAETPTIAKKLEGEEERKKLLRAVdildqleqnveansFNIQAIKEEIRKLKEQVNSLEKDIE 109
                 455555555443..4444444444444444444444444444444444444445555879999999*************9997 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.18   1.4e+02       2      43 ..      26      67 ..      23      71 .. 0.66
   2 !   11.5   4.9   0.00026      0.19      20      56 ..      74     110 ..      70     115 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.18
                XXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  2 lllfllllifgkkgllaykqlkqeiaalqaelaklkaeneeL 43
                +++f +l++    +l+++ ++++e  ++ ++l+   ++++ L
  CCG91997.1 26 FIFFPFLFFSSSAPLFSQDDQNAETPTIAKKLEGEEERKKLL 67
                445555555556667777888888888888888777777665 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00026
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXX CS
       DivIC  20 kqlkqeiaalqaelaklkaeneeLeaevkdLksdedy 56 
                  ql+q+++a   +++++k+e+++L+++v+ L++d + 
  CCG91997.1  74 DQLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKDIEK 110
                 68999**************************888665 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   4.7   3.1e-05     0.024       3      39 ..      74     110 ..      73     112 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.1e-05
   FlaC_arch   3 delEnklsklsteletvkkeneelsksveelkenVkd 39 
                 d+lE+ ++  s +++ +k+e+ +l+++v+ l++++++
  CCG91997.1  74 DQLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKDIEK 110
                 89********************************987 PP

>> DUF3877  Domain of unknown function, E. rectale Gene description (DUF3877)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.6   3.3e-05     0.025      41     132 ..      87     180 ..      56     186 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.3e-05
     DUF3877  41 aeedaeelkealeefaeeakeklGevevtekkdrfcveipeegaeyvheeik...eneFlkeliellkkhectledilelFkkyskkvvvekiee 132
                 +++ +ee+ ++l+e+ ++ ++ + ++++ ++k+r+    p++g   v e+++   +++++++   ++ k++ tle i + ++k   +v+ e+i++
  CCG91997.1  87 IQAIKEEI-RKLKEQVNSLEKDIEKIKIATSKERLSPSNPKKGNAAVSEKAHrgaTTQLVEKGYYYVVKKNDTLESIADAYRKSGVNVTAEDIRK 180
                 22233333.346677888899**************************998761114566777777899****************99999999876 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   2.5   5.2e-05     0.039      74     121 ..      65     112 ..      52     117 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.2e-05
     DUF1664  74 kldeqkeiskeikeevtevredlseigedvesvkeaveglesklerie 121
                 kl    +i  +++++v++ + ++++i+e+++++ke v++le+ +e+i+
  CCG91997.1  65 KLLRAVDILDQLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKDIEKIK 112
                 445555666666666666666666666666666666666666666653 PP

>> TssO  Type VI secretion system, TssO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.9   6.3e-05     0.047      21     101 ..      24     104 ..      21     116 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.3e-05
        TssO  21 vlllflivffffkssplqekeillkelerkkkfeekqkelkkkvdsiykkIdsL.kpevnavfleneIkkdlndikntygkn 101
                 ++++f+   ff +s pl++++++ +e   ++k +e  +e kk +  +   +d+L + ++ ++f  + Ik++++++k++ +  
  CCG91997.1  24 LFFIFFPFLFFSSSAPLFSQDDQNAETPTIAKKLEGEEERKKLLRAV-DILDQLeQNVEANSFNIQAIKEEIRKLKEQVNSL 104
                 56677777788888*********777777777777766666666665.569***999999****************998764 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   2.0   5.2e-05     0.039       7      61 ..      70     129 ..      62     154 .. 0.70
   2 ?   -0.9   0.0       3.4   2.6e+03      28      52 ..     146     170 ..     132     190 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....XXXXXXXXX CS
        YabA   7 fdkleeleeqleelleeleelkeelaelleenaeLeleneklrerl.....eeeekkeke 61 
                 +d l++le+++e+ + +++++kee+ +l e+ ++Le + ek++        + ++ k+ +
  CCG91997.1  70 VDILDQLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKDIEKIKIATskerlSPSNPKKGN 129
                 466899******************************999999877744433222222222 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 3.4
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  28 keelaelleenaeLeleneklrerl 52 
                 ++  + ++++n++Le   +  r+  
  CCG91997.1 146 EKGYYYVVKKNDTLESIADAYRKSG 170
                 5556778888888887777777665 PP

>> DUF2443  Protein of unknown function (DUF2443)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.9   0.00013       0.1      48      71 ..      83     106 ..      69     113 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
                 -HHHHHHHHHHHHHHHHHHHHHHH CS
     DUF2443  48 dvafltqideevekLkeaidaLnk 71 
                 +  +++ i+ee+ kLke++++L k
  CCG91997.1  83 NSFNIQAIKEEIRKLKEQVNSLEK 106
                 5668899***************98 PP

>> Nup88  Nuclear pore component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.7   0.00015      0.11     591     691 ..      53     147 ..      45     152 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
       Nup88 591 lAekyeeikdkQeklvrrvkkvlkrlnsklpvlseaeremkkelekikeklkslknalkqvkkkldkqrkqiakskeeekksslelsekqkktikeiLk 689
                 +A+k+e  +++  kl+ r+ ++l +l++++   s   +++k+e++k+ke+++sl++ ++++k+ ++k r   +   ++ kk + ++sek ++  +  L 
  CCG91997.1  53 IAKKLEGEEERK-KLL-RAVDILDQLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKDIEKIKIATSKERLSPS---NP-KKGNAAVSEKAHRGATTQLV 145
                 677777655554.444.6778999999988888888899***********************99887765544...22.45566666666666666666 PP

       Nup88 690 ee 691
                 e+
  CCG91997.1 146 EK 147
                 65 PP

>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.6    0.0012      0.88     100     153 ..      64     117 ..      48     137 .. 0.84
   2 ?    3.0   0.0       0.1        77     111     157 ..     140     188 ..     125     196 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0012
                 ..........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 100 keindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaasee 153
                 k+  ++v++l++ +q+ve  s  ++  +e+++++ e+v+++++ ++ i+ a+++
  CCG91997.1  64 KKLLRAVDILDQLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKDIEKIKIATSK 117
                 556688999*************************************99877664 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHCCHHHHHHHHHHH..HHHHHHHHHHHHHHHHHH CS
   MCPsignal 111 etrqrveegselveetgealkeiveavae..vadlvqeiaaaseeqsas 157
                  t+q ve+g   v + +++l++i++a  +  v+ + ++i ++ +  s+s
  CCG91997.1 140 ATTQLVEKGYYYVVKKNDTLESIADAYRKsgVNVTAEDIRKSNNLSSHS 188
                 578999******************9976533566666777766655555 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.9   0.00037      0.28      40      89 ..      60     109 ..      46     116 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00037
     BLOC1_2  40 kdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeysk 89 
                 +++ ++l + ++ l++++++++ +  +i++i++++++L+e v+ L++ + 
  CCG91997.1  60 EEERKKLLRAVDILDQLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKDIE 109
                 56667788888888999999999999999999999999999999987555 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   6.8   0.00022      0.17     177     242 ..      51     114 ..      43     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00022
        Spc7 177 aeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeq 242
                  ++ ++le ++e+++ l ++d   L +l +++++++ +i++ k+e+ +l+eq+++le++ie++k  
  CCG91997.1  51 PTIAKKLEGEEERKKLLRAVD--ILDQLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKDIEKIKIA 114
                 567788888888888877765..67888899999************************99998754 PP

>> CC2-LZ  Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   5.1    0.0003      0.22      10      55 ..      66     112 ..      56     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0003
      CC2-LZ  10 kvk.keeieeLkaqlqaaeealaakqeeidelkeeikkkeeeletis 55 
                  ++  + +++L+++++a   +++a +eei +lke++++ e+++e+i+
  CCG91997.1  66 LLRaVDILDQLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKDIEKIK 112
                 33347889************************************997 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.7    0.0005      0.38      16      53 ..      70     107 ..      64     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0005
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX  16 edtieeLndvvaeqqqqidrlqrqlrllaerlkelees 53 
                  d +++L + v +    i+++++++r+l+e++++le++
  CCG91997.1  70 VDILDQLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKD 107
                 6899****************************999987 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.4   0.00028      0.21      48      96 ..      68     119 ..      48     127 .. 0.84
   2 ?   -1.4   0.0       2.9   2.2e+03       9      37 ..     159     186 ..     155     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00028
   AAA_lid_9  48 kAIDllDeaaarvrlkk...eskpeeleklekelaklekekealekeeekek 96 
                  A+D+lD+   +v+ ++   ++ +ee++kl++++++lek+ e+++ +++ke+
  CCG91997.1  68 RAVDILDQLEQNVEANSfniQAIKEEIRKLKEQVNSLEKDIEKIKIATSKER 119
                 59********999988733356778999999999999999999987766554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.9
   AAA_lid_9   9 LrglkekyekhHgvkisdealeaavklSk 37 
                 L+++++ y k  gv+++ e ++++ +lS+
  CCG91997.1 159 LESIADAYRK-SGVNVTAEDIRKSNNLSS 186
                 6677777765.489999999999988885 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.16   1.2e+02      17      36 ..      74      93 ..      71      95 .. 0.85
   2 ?   11.5   0.8   0.00041      0.31       2      27 ..      87     112 ..      79     119 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.16
         LPP 17 dqlssdvnsakaaaqaakeE 36
                dql+++v++ + ++qa+keE
  CCG91997.1 74 DQLEQNVEANSFNIQAIKEE 93
                89999999999999999998 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00041
         LPP   2 ldeLssqVsqLkskvdqlssdvnsak 27 
                 ++ + +++ +Lk++v++l++d++++k
  CCG91997.1  87 IQAIKEEIRKLKEQVNSLEKDIEKIK 112
                 34455556666666666666666555 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.4    0.0017       1.3      17      84 ..      47     115 ..      35     123 .. 0.72
   2 ?   -0.4   0.0       1.4   1.1e+03       5      22 ..     160     177 ..     128     201 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0017
                 XXXXXXXXXX....XXXXXXXXXXXXXXXXX-SSSSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCCCG CS
         MCU  17 vialstllee....eeakvllrvkqlvkalesalnveeeqlkkereleekleelreelepleekkeeidekA 84 
                    + t++++    ee k+llr   ++++le+ ++++   + + ++++e++++l+e++++le+  e+i+ + 
  CCG91997.1  47 NAETPTIAKKlegeEERKKLLRAVDILDQLEQNVEAN---SFNIQAIKEEIRKLKEQVNSLEKDIEKIKIAT 115
                 444444222244448899**************99666...66777888899999999999999888877554 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.4
                 XXXXXXXXXXXXXXXXXX CS
         MCU   5 ieaaavlsesgvvialst 22 
                 +++a ++ +sgv + +++
  CCG91997.1 160 ESIADAYRKSGVNVTAED 177
                 455666777777777766 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.8     0.024        18      11      70 ..      61     120 ..      52     123 .. 0.58
   2 ?   10.8   2.2   0.00065      0.49       2      36 ..      90     124 ..      89     169 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.024
    CCDC-167  11 eklascrerLeaverrlrkeelseeeResleeEeaslkeqleenekeLksLrkeNrksml 70 
                 e+ +++ + ++ +++  +++e  + + ++++eE ++lkeq+++ ek  ++++   +k++l
  CCG91997.1  61 EERKKLLRAVDILDQLEQNVEANSFNIQAIKEEIRKLKEQVNSLEKDIEKIKIATSKERL 120
                 444555555555555556666666666667777777777777777766666655555544 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00065
    CCDC-167   2 vaseIdkleeklascrerLeaverrlrkeelseee 36 
                 + +eI kl e++ s+++++e++     ke+ls+ +
  CCG91997.1  90 IKEEIRKLKEQVNSLEKDIEKIKIATSKERLSPSN 124
                 779*****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2010  (0.112109); expected 358.6 (0.02)
Passed bias filter:                     1036  (0.0577835); expected 358.6 (0.02)
Passed Vit filter:                       220  (0.0122706); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 1540.12
//
Query:       CCG91998.1  [L=502]
Description: Glycerol kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-60  204.9   0.0    1.8e-60  204.5   0.0    1.2  1  FGGY_N       FGGY family of carbohydrate kinases, N-terminal 
      2e-53  181.1   0.4    2.8e-53  180.6   0.4    1.2  1  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
  ------ inclusion threshold ------
       0.19   11.2   0.0         17    4.8   0.0    2.3  2  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.5   0.0   3.1e-64   1.8e-60       2     245 .]       5     253 ..       4     253 .. 0.97

  Alignments for each domain:
  == domain 1  score: 204.5 bits;  conditional E-value: 3.1e-64
                 EEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTT.EESSEEE-TT CS
      FGGY_N   2 ilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDknd.kpLynailwk 99 
                 i ++D+Gt++tk+ ++d++g+vv s+ +e+  + pkegw+eqd+ ei++ + + ++++ ++ ++  ++ +a+gi++qre++vl++k++  pL nai+w+
  CCG91998.1   5 IGVIDQGTSGTKFFLFDQQGHVVFSSFKEHRWYCPKEGWVEQDALEIYHNTLSLVEEAFAAKSLCRSDLVALGITNQRETTVLWEKKTgIPLANAISWQ 103
                 779*************************************************************************************9********** PP

                 --TTHHHHHHHHH.TTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHC....EEEEHHHHHHHHHCT.....--EEEHHHHCTTTSEETTTTEE CS
      FGGY_N 100 drrtaeiveklke.egnekklyektglvlstgftlsklkWlkenepevfekie....kflliddyLiwrLtg.....qfvtdvtnasesmlfnikklew 188
                 d rta  v++ ++   +  +   ktgl+l t+f+++kl Wl+e+ pe+++k+     +f++id++L w+ +g     ++ tdvtnas++ lfni++ +w
  CCG91998.1 104 DSRTADLVNEFSNtPAGLYRYHRKTGLPLATYFSGMKLLWLLEHIPEARKKASsgdlLFGTIDSFLLWKFSGgphggKHLTDVTNASRTLLFNIHTMQW 202
                 *************999999******************************************************************************** PP

                 -HHHHHHTT--GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 189 deellailgipeelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 d+e+l+ l ip  l+P++v+  +i  e       k+G  +g+  +g  gDqqaa++G
  CCG91998.1 203 DQEILEELTIPSILMPEVVPNDAILSE------GKVGCLKGITLAGLIGDQQAALVG 253
                 **********************99875......56788899**************98 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.6   0.4   4.6e-57   2.8e-53       2     197 ..     263     451 ..     262     452 .. 0.95

  Alignments for each domain:
  == domain 1  score: 180.6 bits;  conditional E-value: 4.6e-57
      FGGY_C   2 kvslGTssflll.vgtkpvisehglltpva..gedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpafsg 97 
                 k+++GT+ fll+ ++ +p+ s  gl t+++    +g   yalegs a ags+v wl + l+l    +d++e  e+la      +++d+gg++fvpaf g
  CCG91998.1 263 KCTYGTGAFLLMnTAGRPIFSDSGLITTIGykLRNGNISYALEGSSASAGSAVHWLKQLLKL----KDDQEL-ETLA-----LQASDNGGIYFVPAFCG 351
                 8***********999***************664447789********************888....666676.8999.....8**************** PP

      FGGY_C  98 lrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAav 196
                 l+apywdp ar++++gl+ +t+++h+arA+lea+a+q+r+  e ++k  g++++ l vdGG++kn+ +mq++Adil++++ +p++ e+ta+GaA + ++
  CCG91998.1 352 LFAPYWDPFARAAFFGLTLKTQACHLARAVLEATAFQVRDLFEGMQKACGMKMQGLKVDGGMVKNEWFMQFQADILNRKILTPENSETTAMGAAFITGL 450
                 **********************************************************************************************99887 PP

      FGGY_C 197 a 197
                 a
  CCG91998.1 451 A 451
                 6 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0028        17       3      26 ..       8      31 ..       5      95 .. 0.85
   2 ?    4.1   0.0    0.0046        27     191     265 ..     378     446 ..     361     448 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0028
                 EEE-SSEEEEEEEETTTEEEEEEE CS
  BcrAD_BadFG  3 iDgGsTttkavlmdekgevlgrgi 26
                 iD G++ tk+ l+d++g v+   +
   CCG91998.1  8 IDQGTSGTKFFLFDQQGHVVFSSF 31
                 8*****************986655 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0046
                  HHHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH.....HHHH-S-EE--GGGGGHHHHHHHH CS
  BcrAD_BadFG 191 aedIlaglhraialrvialisrsggvtdevtltGGvakneaavkelrklvkenygevkininpdsiytgalGAal 265
                  a+++l+ ++ ++ ++ + +++  g   + + + GG+ kne +++   + ++ +++       p+ + t a+GAa 
   CCG91998.1 378 ARAVLEATAFQVRDLFEGMQKACGMKMQGLKVDGGMVKNEWFMQFQADILNRKILT------PENSETTAMGAAF 446
                  67899999999999999999999999999**********99998886666666655......7777778888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3623.03
//
Query:       CCG91999.1  [L=254]
Description: Type III pantothenate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-47  162.5   0.0    1.4e-47  162.2   0.0    1.1  1  Pan_kinase  Type III pantothenate kinase


Domain annotation for each model (and alignments):
>> Pan_kinase  Type III pantothenate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.2   0.0   7.8e-52   1.4e-47       1     207 [.       1     190 [.       1     191 [. 0.88

  Alignments for each domain:
  == domain 1  score: 162.2 bits;  conditional E-value: 7.8e-52
                 EEEEEE-SSEEEEEEEETTCCEETEEEEEEEEESCHHHHHHHHHHCHCCCCEGCEEEEEEESSCHHHHHHHHHHHHHHSS-EEEES.CSSECTCEE-SS CS
  Pan_kinase   1 lLliDiGNtrikwalfegeellaswriastaasrtadelaellesllkaagleieaviissVvpaavaalleallkyfkveplvvrssaaklgltngyd 99 
                 ++l D+GN+ +k+al++++e+   +++  ta     +   +ll++++++     +++i++sVvp+ +  +++++l++    ++ ++ ++  lg+ ++y 
  CCG91999.1   1 MILADVGNSVTKIALCQNTEISLLRKV-PTA-----QLSYSLLREIIQNFPK--QDCILCSVVPKFNVYFENVFLDR----IYTID-PSLPLGIAIDYP 86 
                 5789************66665555555.433.....4444555555554444..479*******************9....56788.************ PP

                 SGGGS-HHHHHHHHHHHHHCTTSEEEEEEESSEEEEEEEETTSEEEEEEEEE-HHHHHHHHHHCSSS----HHCCHHSC.SSSBSSHHHHHHHHHHHHH CS
  Pan_kinase 100 npkelGaDRwvaavaarellpgkpllvvdfGTAttfdavsadgeylGGlIaPGlalmleaLaektakLprvelakpaeaesvigknTveaiqsGilygl 198
                 npke+GaDR+++a+a  + + g p++ +dfGTAttfd+v+ +g+y+GG+IaPGl+lm++ L+ekta Lp vel++p    ++i+++T+ea++ G ++g+
  CCG91999.1  87 NPKEIGADRLANAIALASFY-GYPAVAIDFGTATTFDIVNHHGAYCGGVIAPGLNLMRSYLHEKTALLPVVELKEP-L--RAIAQSTEEAMRVGAVLGY 181
                 ******************55.89*****************************************************.6..8****************** PP

                 HHHHHHHHH CS
  Pan_kinase 199 agliegiir 207
                  g++  +i+
  CCG91999.1 182 RGMVLYLIE 190
                 ****88776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1876.46
//
Query:       CCG92000.1  [L=515]
Description: Serine protease Do [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-30  105.0   0.4    1.3e-29  104.1   0.4    1.5  1  Trypsin_2      Trypsin-like peptidase domain
      2e-25   88.9   1.0    5.3e-16   58.7   0.0    3.0  3  PDZ_2          PDZ domain
    2.2e-22   78.6   5.9    5.4e-12   45.4   0.0    3.4  3  PDZ_6          PDZ domain
    1.3e-19   70.3   0.3    1.4e-10   41.3   0.0    3.3  3  PDZ            PDZ domain
    1.5e-14   54.3   0.0    2.7e-14   53.5   0.0    1.3  1  Trypsin        Trypsin
    6.1e-05   22.9   0.9      0.033   14.1   0.1    3.2  3  Tricorn_PDZ    Tricorn protease PDZ domain
    0.00038   19.2   0.0       0.26    9.9   0.0    2.1  2  Peptidase_S46  Peptidase S46


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.4   4.9e-33   1.3e-29       1     150 []     131     266 ..     131     266 .. 0.97

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 4.9e-33
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggeks 99 
                 GsG++v+++g+i+Tn+Hvvd a++  v         +g++++e+++k++++dp +D+Al+k+   e++glp + + +s+ +++g+ v ++G+p   +  
  CCG92000.1 131 GSGVIVSPEGYIVTNNHVVDVAEEIKV--------LVGEQKKEFAGKIIGKDPLTDIALVKI---EASGLPSIVFTDSDLVEVGDIVLAIGNPFALTQ- 217
                 9**************************........8****************777*******...*******************************99. PP

   Trypsin_2 100 gsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                  +v+ Givsg  + ++   +e e+f+qtdaa++pG+SGG+l+d +Gr+vG+
  CCG92000.1 218 -TVTMGIVSGKGR-KDIGIEEYEDFIQTDAAINPGNSGGALVDIQGRLVGI 266
                 .9***********.999999999999************************8 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.84   2.2e+03      32      43 ..     200     211 ..     193     217 .. 0.84
   2 !   58.7   0.0   2.1e-19   5.3e-16       1      77 [.     306     392 ..     306     397 .. 0.96
   3 !   27.2   0.1   1.4e-09   3.6e-06      13      60 ..     442     492 ..     422     499 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.84
                 --TT-EEEEETT CS
       PDZ_2  32 lkagDvilkvdg 43 
                 ++ gD++l++++
  CCG92000.1 200 VEVGDIVLAIGN 211
                 789******975 PP

  == domain 2  score: 58.7 bits;  conditional E-value: 2.1e-19
                 ....XX------............-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEE CS
       PDZ_2   1 pylGvsvsdeed..........tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkkt 77 
                 ++lGv++s++++          ++g+lv +V +g+Pa++ag+kagDvil+ +g+kv++ ++l+ +++++ pG++ +l++ Rdgk+k 
  CCG92000.1 306 GFLGVTISEVTPdlaqafklpeATGALVEQVSPGTPADQAGMKAGDVILEYNGQKVTDPRSLRLAVSQTPPGSKATLKIWRDGKEKI 392
                 689*********************************************************************************985 PP

  == domain 3  score: 27.2 bits;  conditional E-value: 1.4e-09
                 ..-EEEEEE-TTSGGGGT....--TT-EEEEETTB--SSHHHHHHHHHTS- CS
       PDZ_2  13 tggvlvvsVkeggPaakag...lkagDvilkvdgkkvksledlislllkkk 60 
                  +gv++vsV++++Paa+ g   l++gDvil+v +++v + ++  +++ +++
  CCG92000.1 442 VQGVVIVSVDPESPAARPGrnsLQPGDVILEVQHRPVRTVQEALQAVKGTS 492
                 579*************876668***************99999888877655 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.4      0.17   4.4e+02      16      27 ..     200     211 ..     198     211 .. 0.87
   2 !   45.4   0.0   2.1e-15   5.4e-12       2      56 .]     333     386 ..     332     386 .. 0.94
   3 !   33.4   0.2   1.1e-11   2.9e-08       1      54 [.     446     500 ..     446     502 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.17
       PDZ_6  16 lrvGDiilsvNG 27 
                 ++vGDi+l++++
  CCG92000.1 200 VEVGDIVLAIGN 211
                 689******975 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 2.1e-15
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallr.gsagesvvlvvrr 56 
                 V++V pg+PAd+AG+++GD+il+ NGq v  +++  ++ ++  +++g++ +l+++r
  CCG92000.1 333 VEQVSPGTPADQAGMKAGDVILEYNGQKV--TDPRSLRLAVSqTPPGSKATLKIWR 386
                 99***************************..**99999999999999999999987 PP

  == domain 3  score: 33.4 bits;  conditional E-value: 1.1e-11
       PDZ_6   1 vVtaVdpgsPAdr...AGlrvGDiilsvNGqpveglsladvaallrgsagesvvlvv 54 
                 v+ +Vdp+sPA+r     l++GD+il+v  +pv  ++++++ ++++g  g  +  v+
  CCG92000.1 446 VIVSVDPESPAARpgrNSLQPGDVILEVQHRPV--RTVQEALQAVKGTSGNVLLRVW 500
                 689**********86545***************..***********77776665555 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.27   6.8e+02      44      55 ..     200     211 ..     195     222 .. 0.77
   2 !   41.3   0.0   5.6e-14   1.4e-10       7      82 .]     302     385 ..     296     385 .. 0.91
   3 !   24.1   0.1   1.3e-08   3.4e-05      24      81 ..     441     499 ..     422     500 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.27
                 SSTTEEEEEETT CS
         PDZ  44 lkvGDkIlsvNg 55 
                 ++vGD++l++++
  CCG92000.1 200 VEVGDIVLAIGN 211
                 689*******98 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 5.6e-14
                 S.TTSESSEEEEEETTSS.......SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEEE CS
         PDZ   7 e.grgglGfslkggsdqr.......gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLtil 82 
                 +  rg+lG+++++ + +        +++g+ v +v+pg +a+++g k+GD+Il+ Ng++v++ + ++ +   +++++k tL+i+
  CCG92000.1 302 RvIRGFLGVTISEVTPDLaqafklpEATGALVEQVSPGTPADQAGMKAGDVILEYNGQKVTDPRSLRLAVSQTPPGSKATLKIW 385
                 44799**********999********************7777777***********************9999999999999985 PP

  == domain 3  score: 24.1 bits;  conditional E-value: 1.3e-08
                 SSSSEEEEEECTTSHHHH..HT.SSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ  24 gdkgifvsevlpggaaea..dg.lkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                 + +g+++ +v p ++a++   + l++GD+Il+v  ++v++v   ea qa+kg++g+v L +
  CCG92000.1 441 DVQGVVIVSVDPESPAARpgRNsLQPGDVILEVQHRPVRTV--QEALQAVKGTSGNVLLRV 499
                 458**********7777633358****************99..789999999999998876 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0     1e-17   2.7e-14      27     215 ..     131     288 ..     118     294 .. 0.77

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1e-17
                 EEEEEEETT.EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTSTTTEEEE CS
     Trypsin  27 CgGslisen.wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttclv 124
                  +G+++s++ +++T++H+v+ a+++kv +ge      ++  +++  + +    + +p t   Dial+k++++         i   + s+ ++vg  ++v
  CCG92000.1 131 GSGVIVSPEgYIVTNNHVVDVAEEIKVLVGE------QK--KEFAGKII----GKDPLT---DIALVKIEAS-----GLPSIVFTD-SDLVEVG--DIV 206
                 57999**999***********9999999997......22..33444442....468888...**********.....566666666.6655666..9** PP

                 EESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEESSSSCTTS..EEEEEEGG CS
     Trypsin 125 sGwgrtkekgksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswgkgcakgnr..pgvytkvs 215
                  ++g++++       q+v++ +vs  + +++++ +  e++++++a     ++++G+SGG+lv  +g lvGi+++  + ++ ++  +g++++ +
  CCG92000.1 207 LAIGNPFALT-----QTVTMGIVSG-KGRKDIGIEEYEDFIQTDA-----AINPGNSGGALVDIQGRLVGINTAIVSPGRVGNlgIGFAVPSN 288
                 ******9999.....6677777766.44444556678********.....***********************99444444443677777766 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.1   1.1e+04      40      50 ..     200     210 ..     200     222 .. 0.82
   2 !    5.9   0.0    0.0048        12      34      65 ..     343     372 ..     328     394 .. 0.73
   3 !   14.1   0.1   1.3e-05     0.033      29      79 ..     452     502 ..     426     510 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.1
                  -.TT-EEEEET CS
  Tricorn_PDZ  40 vreGdlilavd 50 
                  v++Gd++la+ 
   CCG92000.1 200 VEVGDIVLAIG 210
                  579****9995 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0048
                  GGGS---.TT-EEEEETTEE-BTTB-HHHHHH CS
  Tricorn_PDZ  34 aepGvnvreGdlilavdgepvskekgiaelLv 65 
                   + G++  +Gd+il+ +g++v+  +++  +  
   CCG92000.1 343 DQAGMK--AGDVILEYNGQKVTDPRSLRLAVS 372
                  566776..8************98777655544 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 1.3e-05
                  -B-GGGGGS--.-.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-S CS
  Tricorn_PDZ  29 arSPLaepGvn.vreGdlilavdgepvskekgiaelLvgkagkeveLtvkrk 79 
                   +SP a+pG n ++ Gd+il+v  +pv+++++  ++  g++g +v L+v +k
   CCG92000.1 452 PESPAARPGRNsLQPGDVILEVQHRPVRTVQEALQAVKGTSG-NVLLRVWSK 502
                  579999999874799**************************9.899998775 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0001      0.26      46      67 ..     128     149 ..     116     156 .. 0.91
   2 !    7.1   0.1   0.00069       1.8     627     651 ..     243     267 ..     211     271 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0001
                    TTTEE-EE-STT-EEEE-HHHH CS
  Peptidase_S46  46 lggCtasfVSpeGLvlTNHHCa 67 
                    +g  ++ +VSpeG ++TN H++
     CCG92000.1 128 TGLGSGVIVSPEGYIVTNNHVV 149
                    6889****************97 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00069
                    ES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 627 stnDitGGNSGSPvlngkgelvGla 651
                    +++ i  GNSG ++++ +g+lvG++
     CCG92000.1 243 TDAAINPGNSGGALVDIQGRLVGIN 267
                    6677889****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3811.56
//
Query:       CCG92001.1  [L=155]
Description: PIN domain containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-30  105.6   0.0    2.9e-30  105.4   0.0    1.0  1  NYN_YacP  YacP-like NYN domain
  ------ inclusion threshold ------
       0.22   11.8   0.8         25    5.2   0.2    2.4  2  DUF5616   Domain of unknown function (DUF5616)


Domain annotation for each model (and alignments):
>> NYN_YacP  YacP-like NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   3.2e-34   2.9e-30       1     135 [.      12     143 ..      12     154 .. 0.90

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 3.2e-34
                 EEEEHHHHHHHSHHHHT--.HHHHHHHHHHHHHHHHHHHHHH--EEEEEE-TTTS---TT----T.T-EEEE--TT--HHHHHHHHHHHC--TT--EEE CS
    NYN_YacP   1 llvDGYNvigawpelkklkekesleaaRekLieelanyqsfkgyevivVFDAqkvkgseeeeekaeglevvytkegetADsvIeklvaelrkekeevvV 99 
                 l++DGYNvi+aw++lk ++ ++sl +aRe Lie+l+  + ++ y+v++VFD+++ +        ++++ +v++ +g +AD +Iek+v+e    +++v+V
  CCG92001.1  12 LVIDGYNVIHAWNDLKVAQ-RQSLRKARELLIERLSILHDLEIYQVVLVFDGKSPEP-VAIPPVSDDFIIVFSPKGMSADGLIEKYVNESVA-RRQVMV 107
                 79*************9999.789*****************************66555.44455668************************98.9***** PP

                 E---CSSCTGGGGCTEEEE-HHHHHHHHHHHHHHHH CS
    NYN_YacP 100 vTSDraeqlvvfgkGAlrlsarelveevkeaekeik 135
                 vTSD +e++ v + GA ++s + l++e+   +++ k
  CCG92001.1 108 VTSDLEEKRQVESMGAFCMSPEWLQQELAYRQDDFK 143
                 ***************************998888776 PP

>> DUF5616  Domain of unknown function (DUF5616)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2    0.0027        25       9      18 ..      12      21 ..       6      28 .. 0.87
   2 ?    4.9   0.0    0.0034        31      55     124 ..      39     111 ..      25     119 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0027
     DUF5616  9 lliDGfNvli 18
                l+iDG+Nv+ 
  CCG92001.1 12 LVIDGYNVIH 21
                89******96 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0034
     DUF5616  55 ealelilellkelkvkkvifllDkpvSnSgel...aklireileeaglegevelvknvDkeLkeseeivatsD 124
                 e l   l++l++l++ +v++++D + ++   +      +  +++ +g++ +  ++k v++ +++ + +v+tsD
  CCG92001.1  39 ELLIERLSILHDLEIYQVVLVFDGKSPEPVAIppvSDDFIIVFSPKGMSADGLIEKYVNESVARRQVMVVTSD 111
                 4444556778888888888888887777766511134444456778999999999999999999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1181.32
//
Query:       CCG92002.1  [L=323]
Description: Tryptophanyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-54  183.6   0.0    6.5e-54  183.2   0.0    1.2  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.2   0.0   3.6e-58   6.5e-54       7     231 ..       4     222 ..       2     277 .. 0.90

  Alignments for each domain:
  == domain 1  score: 183.2 bits;  conditional E-value: 3.6e-58
                   EEEEEEETSSS-BGG.GHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHHHTTHHHHHH CS
  tRNA-synt_1b   7 rvysGidPTgklHlG.ylvplkklvelqkaghevffliaDlhAiigdpskaeerklrkreevlenaikaqlakgldpekaevvlqsewlehlelael 102
                   rv+sGi+P+g lH+G y++ +k  +e q ++ +++ +iaD hA++  ++   ++ l + +++ + a    la+gldp k+ ++ qs+++e  ela++
    CCG92002.1   4 RVLSGIQPSGFLHIGnYFGMIKRAIEWQ-DKAQTLYFIADYHALTSIKD---PQHLSQYVRKIAMA---FLACGLDPAKSIFFRQSAIPEVHELAWI 93 
                   89**************************.99******************...**************...**************************** PP

                   HHHHHTTCBHHHHHHHHHCCHHCSSSC--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHHHHHHHHHHH..STTSS-EEEEET...-BBST CS
  tRNA-synt_1b 103 lrdlgklgslnrmlqfksvkkrleegegislgeftYplLqaaDilllkadlvpgGsDQkqnielgrdlarrfnkk..evfkkpegltvp...lltgl 194
                   l++++++g l+r  +fk+   ++++g + ++++f+Yp+L++aDill+++++ p+G+DQkq++e++rd+a++fn +  evf++pe+ + +   +++g+
    CCG92002.1  94 LSSITPFGLLERSHSFKD---KVSKGLSPTVALFSYPVLMTADILLYQSEIIPVGQDQKQHLEIARDIAKKFNNTfgEVFRIPEPDIQEevaIIPGI 187
                   ******************...344433348******************************************************999999******* PP

                   TSSSBTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTC CS
  tRNA-synt_1b 195 dGekKmSKSagnsaIfLddekesvkkkiqkavtdsde 231
                   dG+ KmSKS +n ++ + ++ e+ k  + +++tds  
    CCG92002.1 188 DGQ-KMSKSYNN-TLEIFGDLEEFKRRVMSIKTDSTP 222
                   ***.********.*****************9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.34
# Mc/sec: 2849.08
//
Query:       CCG92003.1  [L=271]
Description: Chorismate mutase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-17   63.5   0.1    2.8e-17   62.8   0.1    1.3  1  CM_2      Chorismate mutase type II


Domain annotation for each model (and alignments):
>> CM_2  Chorismate mutase type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.1   1.6e-21   2.8e-17       1      74 [.       7      83 ..       7      84 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 1.6e-21
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSGSS-HHHHHHHHHHHHH...HHS-HHHHHHHHHHHHHHHHHHH CS
        CM_2  1 RkeIdeiDdeileLLaeRaelakevgeyKkeeglpvydpeReaevlerlee...galdeeaierifreiisasralq 74
                R+++++iD++il+ L+ R++la+e+ge Kk  g p++d+ Re+  l++l++   g+l ++ +e i+rei+s sr++q
  CCG92003.1  7 RTQLEKIDNRILKFLNLRMKLAQEIGEKKKSCGYPILDTYREDRYLKNLKAinrGPLRDNNLEGIYREIFSSSRSQQ 83
                99****************************9999*****************99999******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1884.04
//
Query:       CCG92004.1  [L=521]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.026   14.6   0.4      0.026   14.6   0.4    2.9  3  UPF0242       Uncharacterised protein family (UPF0242) N-term
       0.24   10.9  17.4       0.75    9.3   5.2    2.4  2  Vps5          Vps5 C terminal like
       0.43   10.9   8.5          1    9.7   0.7    3.0  3  E2R135        Coiled-coil receptor-binding R-domain of colici
       0.48   10.3   5.6      0.087   12.7   0.5    2.1  2  Sec8_exocyst  Sec8 exocyst complex component specific domain
        0.6   10.7  11.2       0.72   10.4   0.9    2.4  2  TipAS         TipAS antibiotic-recognition domain
        1.1    8.1  24.9       0.12   11.3   4.7    2.1  2  Spc7          Spc7 kinetochore protein
        1.8    8.9  27.6        2.2    8.6   9.8    2.8  2  OmpH          Outer membrane protein (OmpH-like)
          6    6.2  20.3          4    6.8   2.2    2.2  2  Golgin_A5     Golgin subfamily A member 5
        7.3    5.0   6.1        3.6    6.0   0.6    2.0  2  FUSC          Fusaric acid resistance protein family
        9.2    6.7  12.5       0.38   11.1   1.3    2.4  2  Ly49          Ly49-like protein, N-terminal region


Domain annotation for each model (and alignments):
>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.4   1.4e-05     0.026      74     151 ..     205     312 ..     148     321 .. 0.54
   2 ?   -2.2  14.8       2.1   3.9e+03      65     125 ..     371     437 ..     349     452 .. 0.75
   3 ?   -4.3   0.2       9.2   1.6e+04      32      39 ..     491     498 ..     489     508 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
     UPF0242  74 eaklteld..................eglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiae............dfeelklelee 142
                 + ++ + +                  e++++k+e+l++++ +   L+e+l   +++ +  + e q + ++ ++ a             ++++ + ele+
  CCG92004.1 205 IYLVYDFSgdikalrdnylttispcqEDIQNKKENLKKARTDITALNERLRLLKQQEHVAETEIQIVAKEYQEKADhiwknegvlldqEYDKKLAELED 303
                 333333332222233333333344448888888888888888888888877777777777777775544444444345557666666677777777777 PP

     UPF0242 143 qLaekqell 151
                 + +e+ ++l
  CCG92004.1 304 RFKERAQQL 312
                 777766654 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.1
     UPF0242  65 l......ekskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqek 125
                         k+  +e   k+++l+e++   +  +++++ e   L++e+++ e+el + +e + +++e+
  CCG92004.1 371 ReelkrmTKEIQSEVGPKIQALREQILRLQSRIKDSELELTPLEQEYANNERELLEAEETERKIKER 437
                 2334444556666667778888899999999999999999999999*********999999999987 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 9.2
     UPF0242  32 sWsllsiG 39 
                 +Wsl+s+ 
  CCG92004.1 491 WWSLFSFP 498
                 9****995 PP

>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.3    0.0019       3.4     130     193 ..     219     282 ..     214     311 .. 0.91
   2 ?    9.3   5.2   0.00042      0.75     134     185 ..     357     409 ..     350     447 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0019
        Vps5 130 RvklwqkwqsaeqelskkkeqleKlekaaksqqdklqqlkkeveelerkvqeaekeFeeiseti 193
                 R +   ++  ++++++ kke+l+K+++     +++l+ lk++ + +e+ +q + ke++e ++ i
  CCG92004.1 219 RDNYLTTISPCQEDIQNKKENLKKARTDITALNERLRLLKQQEHVAETEIQIVAKEYQEKADHI 282
                 6777888999************************************************988877 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00042
        Vps5 134 wqkwqsaeqelskkkeqleKlekaaksq.qdklqqlkkeveelerkvqeaeke 185
                  +kw+++e+e + k+e+l++++k+ +s+   k+q+l++++  l++++++ e e
  CCG92004.1 357 LKKWHTFEKENEAKREELKRMTKEIQSEvGPKIQALREQILRLQSRIKDSELE 409
                 589***********************99999****************998876 PP

>> E2R135  Coiled-coil receptor-binding R-domain of colicin E2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.7   0.00056         1      83     108 ..     230     255 ..     219     282 .. 0.85
   2 ?    4.7   0.1      0.02        36       8      69 ..     292     342 ..     281     352 .. 0.61
   3 ?   -0.5   0.3      0.79   1.4e+03      69     132 ..     379     443 ..     350     447 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00056
      E2R135  83 dkdiqnqneklkaaqtslnemnesls 108
                 + diqn++e+lk a+t +  +ne l 
  CCG92004.1 230 QEDIQNKKENLKKARTDITALNERLR 255
                 68*********************986 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.02
      E2R135   8 reydkakaeldaedkniatlnsriastekaipgaraavqeadkkvkeaeankddfvtynpph 69 
                 +ey          dk++a l+ r     +   g   ++  a+ +  ea  n  ++  ynpp 
  CCG92004.1 292 QEY----------DKKLAELEDRFKERAQQ-LGINFTISSAEARSPEAWVNAYNLALYNPPP 342
                 444..........55666666665443333.3555666666666666666666666666665 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.79
      E2R135  69 heygsgwqdqvryldkdiqnqneklkaaqtslnemneslsrdkaalsgame.srkqkekkakdae 132
                 +e  s    +++ l  +i   + ++k ++  l  +++  + +   l  a e  rk ke+  kd e
  CCG92004.1 379 KEIQSEVGPKIQALREQILRLQSRIKDSELELTPLEQEYANNERELLEAEEtERKIKERFLKDLE 443
                 44455555566666667777777777777777777776666666665555524777888777766 PP

>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   4.9e-05     0.087      77     125 ..     222     270 ..     210     277 .. 0.88
   2 ?   -0.9   0.5      0.77   1.4e+03      87     117 ..     388     418 ..     363     448 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.9e-05
  Sec8_exocyst  77 ilssiqesqekvselKesleeakkklstkkkeLkelnarsakykeviei 125
                    l +i+ +qe++++ Ke+l++a++++++ ++ L+ l+++    +  i+i
    CCG92004.1 222 YLTTISPCQEDIQNKKENLKKARTDITALNERLRLLKQQEHVAETEIQI 270
                   5789********************************9998888777776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.77
  Sec8_exocyst  87 kvselKesleeakkklstkkkeLkelnarsa 117
                   k+++l+e++   ++ +++ + eL+ l+++ a
    CCG92004.1 388 KIQALREQILRLQSRIKDSELELTPLEQEYA 418
                   4445555555555555555555555544443 PP

>> TipAS  TipAS antibiotic-recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.9    0.0004      0.72      26      88 ..     236     301 ..     224     319 .. 0.85
   2 ?    4.6   3.4     0.026        46      20      75 ..     350     405 ..     346     444 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0004
                 XXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXX CS
       TipAS  26 skedweelkaelkelfaklaaalaagkdpdseeaqelaeehralieefwge....cskeilaglgqm 88 
                 +ke+++++ +   +l+++l+ +  +++ ++  e+q +a+e+++ + ++w++     ++e+ + l+++
  CCG92004.1 236 KKENLKKARTDITALNERLRLLK-QQEHVAETEIQIVAKEYQEKADHIWKNegvlLDQEYDKKLAEL 301
                 789999*************9995.8888*********************954999888888888875 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.026
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TipAS  20 ekiaklskedweelkaelkelfaklaaalaagkdpdseeaqelaeehralieefwg 75 
                 +++a+ + ++w  +++e ++  ++l+++ ++ ++   +++q+l e++ +l +++++
  CCG92004.1 350 RQWAEEELKKWHTFEKENEAKREELKRMTKEIQSEVGPKIQALREQILRLQSRIKD 405
                 56777777777777777777777777777777777777777777777777776555 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.7   6.5e-05      0.12     198     288 ..     230     318 ..     213     334 .. 0.81
   2 ?    2.6  12.3     0.028        51     175     262 ..     349     436 ..     344     449 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.5e-05
        Spc7 198 keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleeltgwkivs 288
                 +e++++ +e+l+++ ++i +++++l  l++q    e++i+ ++++++e  + i + e vl  ++   ++ + +l++++k+  +++g++++ 
  CCG92004.1 230 QEDIQNKKENLKKARTDITALNERLRLLKQQEHVAETEIQIVAKEYQEKADHIWKNEGVLLDQE--YDKKLAELEDRFKERAQQLGINFTI 318
                 7889999999999999999999999999999999999999999999999999999999998555..4556889999999999998888874 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.028
        Spc7 175 ekaeleeeleklqeaaeelesidkeeLeelreela.elkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckg 262
                 e++  eeel+k  ++++e ++ ++eeL+ + +e++ e+  +i+++++++ +lq++++++e +++ l++++++ e e+ eae++ ++ k+
  CCG92004.1 349 ERQWAEEELKKWHTFEKE-NEAKREELKRMTKEIQsEVGPKIQALREQILRLQSRIKDSELELTPLEQEYANNERELLEAEETERKIKE 436
                 555667777777777776.5557777777766664256777888888888888888888888877777777777777777776655554 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  10.0     0.022        40      16      98 ..     214     309 ..     207     313 .. 0.63
   2 ?    8.6   9.8    0.0012       2.2      15      93 ..     348     427 ..     344     450 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHH......HHHHHHHHHHHHHHHH.........HHHHHHHHHHHHHHHHHH CS
        OmpH  16 egkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqe......lqkkeqelqqkqqqka.........qelqkkqqellkpildki 98 
                 + ka ++++ +++++ q+++++k+++l+k+++++ + ++ l +  k+qe      +q   +e+q+ ++            qe+ kk +el +++ +++
  CCG92004.1 214 DIKALRDNYLTTISPCQEDIQNKKENLKKARTDITALNERL-RLLKQQEhvaeteIQIVAKEYQE-KADHIwknegvlldQEYDKKLAELEDRFKERA 309
                 56778888888889999999999999999999996444433.33333334445668888888888.55555565554445555555555555554444 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHH CS
        OmpH  15 pegkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqka....qelqkkqqellkp 93 
                 +e++ a+e+l kk  ++++e eak++el+++ +e+q +    + ++ ++++ +++ ++++  + +     qe++++++ell+ 
  CCG92004.1 348 KERQWAEEEL-KKWHTFEKENEAKREELKRMTKEIQSEVGP-KIQALREQILRLQSRIKD-SELELtpleQEYANNERELLEA 427
                 6778899999.55569*******************965555.377777775555555555.3333335557777777777763 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   2.2    0.0023         4      90     174 ..     228     307 ..     205     320 .. 0.49
   2 ?    4.9  10.5    0.0086        15      86     174 ..     348     436 ..     342     458 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0023
   Golgin_A5  90 slreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlq...srikdrekeieklrnqlttkslsssseselesRlkq 174
                  ++       e +++++++ +++++++  l+e lr l+++ + + +++q   ++ +++ ++i k +  l   +  + + +ele+R k+
  CCG92004.1 228 PCQ-------EDIQNKKENLKKARTDITALNERLRLLKQQEHVAETEIQivaKEYQEKADHIWKNEGVL-LDQEYDKKLAELEDRFKE 307
                 333.......34444444444444444444444444444443333333300133344444444433333.333344466666666654 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0086
   Golgin_A5  86 aeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdrekeieklrnqlttkslsssseselesRlkq 174
                 +e + ++e+l++ ++  +e+++++ee++   ++++ e+    + l+++   lqsrikd e e+  l+++ ++++ +  + +e e ++k+
  CCG92004.1 348 KERQWAEEELKKWHTFEKENEAKREELKRMTKEIQSEVGPKIQALREQILRLQSRIKDSELELTPLEQEYANNERELLEAEETERKIKE 436
                 56677788888888888888888888888888888888888888888888888888888888888888888888888888888877764 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.6     0.002       3.6     213     306 ..     232     331 ..     229     337 .. 0.84
   2 ?    1.7   0.6     0.041        74     208     275 ..     362     428 ..     353     454 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.002
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaaleaaaaaealeaalaalrarlralrrale......adadtaallla 305
                 +i++  + l+ ++++++al  +l+ l ++ +   +e +  ++e ++  +++ + e   + ++++++la+l++r+++  ++l        + +++ +++ 
  CCG92004.1 232 DIQNKKENLKKARTDITALNERLRLLKQQEHVAETEIQIVAKEYQEKADHIWKNEGVLLDQEYDKKLAELEDRFKERAQQLGinftisSAEARSPEAWV 330
                 678888999*******************************999999999999989999****************9999998877777744444444444 PP

        FUSC 306 r 306
                 +
  CCG92004.1 331 N 331
                 4 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.041
        FUSC 208 ayesprirararalrrllsrml.allallsslarllarlraeeaaavpelaallaelaaleaaaaaeal 275
                 ++e+++  a  + l+r++ +++ ++ + +++l+++  rl+++ ++++ el +l +e a+  ++++ ea+
  CCG92004.1 362 TFEKEN-EAKREELKRMTKEIQsEVGPKIQALREQILRLQSRIKDSELELTPLEQEYANN-ERELLEAE 428
                 566666.55555566655555414667777777777777777777777777777777773.22222222 PP

>> Ly49  Ly49-like protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.3   0.00021      0.38      46     102 ..     223     279 ..     214     288 .. 0.88
   2 ?    0.1   4.1      0.54   9.6e+02      35      93 ..     364     424 ..     349     443 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
                 XXXXXXXXXXXXXXXXXXXXXXXXXX..HHHHHHHHHHHHHHHHHHHTTTSXSXXXX CS
        Ly49  46 sqnysimqndinlkeelLrnkslecsilkdlleslkreqkrlysktktvlkslqntG 102
                     s  q+di+ k+e L++   ++++l++ l  lk++ +   ++ ++v k  q+++
  CCG92004.1 223 LTTISPCQEDIQNKKENLKKARTDITALNERLRLLKQQEHVAETEIQIVAKEYQEKA 279
                 5567889******************************************99999876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.54
                 XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....HHHHHHHHHHHHHHHHHHHT CS
        Ly49  35 ekheleetlnlsqnysimqndinlkeelLrnkslecs..ilkdlleslkreqkrlysktkt 93 
                 ek+++ +  +l++  + +q+++  k + Lr++ l  +  i + +le    eq+  +++++ 
  CCG92004.1 364 EKENEAKREELKRMTKEIQSEVGPKIQALREQILRLQsrIKDSELELTPLEQEYANNEREL 424
                 4445555556667777888888888888888876654104445777777777777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1974  (0.110101); expected 358.6 (0.02)
Passed bias filter:                      799  (0.0445647); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:01.14
# Mc/sec: 1378.68
//
Query:       CCG92005.1  [L=246]
Description: 3-dehydroquinate dehydratase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-24   88.1   0.0    1.2e-24   87.9   0.0    1.0  1  DHquinase_I  Type I 3-dehydroquinase


Domain annotation for each model (and alignments):
>> DHquinase_I  Type I 3-dehydroquinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   6.7e-29   1.2e-24      21     227 ..      31     228 ..      17     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 6.7e-29
                  T.S-SEEEEEGGG-.TT.T.HHHHHHHHHHHHHHTTS-EEEE---GGGT-S.SSS-HHHHHHHHHHHHHCT-SEEEEEGG-.HHGHHHHHHHHHHHTT CS
  DHquinase_I  21 e.kaDlvElRlDllketse.aedvseeleelrstsdlpliftlrtkaeggrfkrkseeeylellrtaielgadyvDvElteapeeskkrlieekregg 116
                  +  +Dl+E RlD++  + + +e +    + l++ ++lp+++t+r+k+egg++ + s+ e+ el+++     +d vD+E+ e++  + +++ +  ++gg
   CCG92005.1  31 HlPIDLIEYRLDSILLELDfEEGIVALQRSLQE-RSLPVLLTIRSKKEGGML-ELSDCERSELFEKFFPY-VDCVDLEWQEYS--KISTIYSLYKNGG 123
                  4579**********8775533333333333333.6****************7.9**************95.9*******6433..77789999999** PP

                  -EEEEEEEESS----HHHHHHHHHHHHHTT-SEEEEEE--SSHHHHHHHHHHHHHHHHHT-SS-EEEEE-TTTTGHHHCHHHHHTB-EEEEESSS-.. CS
  DHquinase_I 117 tkvIvSyhdfegtpsaeelkallekmqalgaDivKiavmaksieDvlrllsltseakeekdeaplIamamGelGkiSRilgevfGspvtfasleeaka 214
                   k+I+S h  ++  + ++l+a l  ++ l+ D+vK+av  ++     +l +l +    +++++p   m +Ge   +SRi+  ++Gs + ++ ++++  
   CCG92005.1 124 KKIILSIHSLSEFIDLNKLIASLPDIKLLDPDFVKVAVRIENLGQLKQLTELFF----SYPKIPWSLMGIGEFSHLSRIVLSALGSRLVYGYIDKP-- 215
                  ******************************************999999999987....3577******************************9999.. PP

                  SSTT-EEHHHHHH CS
  DHquinase_I 215 sapGqltarelre 227
                  +a Gq+++ +l+e
   CCG92005.1 216 AALGQPSVLDLKE 228
                  ********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1841.11
//
Query:       CCG92006.1  [L=378]
Description: rod shape-determining protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.5e-153  508.5   6.6   6.5e-153  508.3   6.6    1.0  1  MreB_Mbl  MreB/Mbl protein
    5.8e-14   51.2   1.3    5.6e-13   48.0   0.1    2.1  2  HSP70     Hsp70 protein
    2.7e-12   47.0   1.3    7.9e-12   45.5   0.1    2.2  2  FtsA      Cell division protein FtsA
      2e-09   36.6   0.1    6.1e-05   21.8   0.1    2.1  2  Actin     Actin
    8.7e-09   34.8   0.1      0.011   14.8   0.1    3.1  3  PilM_2    Type IV pilus assembly protein PilM;
    0.00051   19.1   3.6      0.016   14.2   1.0    2.9  3  DDR       Diol dehydratase reactivase ATPase-like domain


Domain annotation for each model (and alignments):
>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  508.3   6.6  2.2e-156  6.5e-153       1     325 [.      45     369 ..      45     371 .. 0.99

  Alignments for each domain:
  == domain 1  score: 508.3 bits;  conditional E-value: 2.2e-156
                 SSEEEEEE-SSEEEEEETTTEEEEEEES-EEEETTT--EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEE CS
    MreB_Mbl   1 skdlgiDLGtantlvyvkgkgivlnepsvvAikkktkkvlavGeeAkkmlgktpgnikavrPlkdGviadlevaeellkyfikkvkkkkslskprvvic 99 
                 s+d+giDLGtantlvy++gkgiv++ep+vvA+ + tk+vlavGeeAk+mlg+tpgni+avrPlkdGvi+d++++e++lk fi+kv+++ +l++prvv++
  CCG92006.1  45 SNDIGIDLGTANTLVYIRGKGIVMREPTVVAVYQGTKNVLAVGEEAKRMLGRTPGNITAVRPLKDGVITDFHLTESMLKAFIHKVQSHFHLRRPRVVVA 143
                 589************************************************************************************************ PP

                 E-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHHHHHHHHHSEE--H CS
    MreB_Mbl 100 vPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevavislggivtsksvrvaGdeldeaiikyirkkynlliGe 198
                 vPsgiteverrAv+e+ak+aGarev+l+eep+aAAiG glpv+e+sgnm++diGggtteva+isl+giv+s+svrvaGde+deai++y+r+ ynl+iGe
  CCG92006.1 144 VPSGITEVERRAVQESAKHAGAREVFLVEEPMAAAIGVGLPVHEASGNMIIDIGGGTTEVAIISLSGIVYSRSVRVAGDEMDEAIVNYLRRAYNLMIGE 242
                 *************************************************************************************************** PP

                 HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH CS
    MreB_Mbl 199 rtaekikieigsavkeeeeekmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseet 297
                 rtae+iki+igsa++ e+e+ me++Grdlv glpk+++++s+evrea+ +p+s ive+v+ +Le++ppeL+ad+v+rgivl+GGgall+g+d+ll eet
  CCG92006.1 243 RTAEEIKIKIGSAYPLEKETIMEVRGRDLVAGLPKTLTITSQEVREAMMDPISVIVESVRVTLERCPPELSADLVERGIVLAGGGALLRGIDRLLAEET 341
                 *************************************************************************************************** PP

                 SS-EEE-SSTTTHHHHHHHHTTC-HHHH CS
    MreB_Mbl 298 glpvkvaedpltcvakGtgkvleklkkl 325
                  lpv++aedpl++va+Gtgk+le+++ l
  CCG92006.1 342 ALPVYIAEDPLSAVAEGTGKILEEYQYL 369
                 ***********************98765 PP

>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2     0.014        42       2      19 ..      48      65 ..      47     104 .. 0.68
   2 !   48.0   0.1   1.9e-16   5.6e-13     122     239 ..     126     237 ..     103     251 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.014
                EEEEEXSSEEEEEEEETT CS
       HSP70  2 iGiDLGttnsvvavmegg 19
                iGiDLGt n++v +  +g
  CCG92006.1 48 IGIDLGTANTLVYIRGKG 65
                8*********99875433 PP

  == domain 2  score: 48.0 bits;  conditional E-value: 1.9e-16
                 HHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSSXEEEEEEEEETTEEEEEEEEEETT CS
       HSP70 122 ketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGggtfdvSilelekGvfevkaTagDth 220
                  ++++++   +   +v++vP+  ++ +R+a+++ +k AG   + +v ep Aaa+  Gl  ++ + n +++D+Gggt++v i++l+  v+     +   +
  CCG92006.1 126 IHKVQSHFHLRRPRVVVAVPSGITEVERRAVQESAKHAGAREVFLVEEPMAAAIGVGLPVHEASGN-MIIDIGGGTTEVAIISLSGIVY-----SRSVR 218
                 555555555555689**********************************************96666.568**************86555.....44568 PP

                 XSHHHHHHHHHHHHHHHHH CS
       HSP70 221 lGGedfDealvehlveefk 239
                 + G+++Dea+v++l++ ++
  CCG92006.1 219 VAGDEMDEAIVNYLRRAYN 237
                 89************98875 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.52   1.5e+03       2      26 ..      49      74 ..      48     105 .. 0.74
   2 !   45.5   0.1   2.7e-15   7.9e-12       2     101 ..     193     356 ..     192     359 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.52
                EEEE-SSSEEEEEEETTEEEE.EEEE CS
                xxxxxxxxxxxxxxxxxxxxx.xxxx RF
        FtsA  2 lvDiGagktdvavaedgalvh.lrvi 26
                ++D+G+  t v +  +g ++   +v+
  CCG92006.1 49 GIDLGTANTLVYIRGKGIVMRePTVV 74
                79999999988887776644334444 PP

  == domain 2  score: 45.5 bits;  conditional E-value: 2.7e-15
                 EEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHHHHHHH......T--HHHHHHHHHHH--S--....................EEEEEHHHHH.... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxx....................xxxxxxxxxx.... RF
        FtsA   2 lvDiGagktdvavaedgalvhlrvigvggngitkdiakal......rtaveeAerikikyGsala....................ekeigrkels.... 70 
                 ++DiG+g+t+va+++ +++v++r++ v+g+ +++ i++ l       +   +Ae+ikik+Gsa++                    + +i+++e+     
  CCG92006.1 193 IIDIGGGTTEVAIISLSGIVYSRSVRVAGDEMDEAIVNYLrraynlMIGERTAEEIKIKIGSAYPleketimevrgrdlvaglpkTLTITSQEVReamm 291
                 8**********************************77777222222555789*************9888877777777777766633333333337777 PP

                 ..................................GGGGSTTHHHHHHHHH.T-..HH.HT-GGGHHH CS
                 ..................................xxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxx RF
        FtsA  71 ..................................ggsalpnleelaeral.spklee.vsdpeyasa 101
                                                   gg+ l+++++l+++ +  p  +  ++dp  a+a
  CCG92006.1 292 dpisvivesvrvtlercppelsadlvergivlagGGALLRGIDRLLAEETaLP--VYiAEDPLSAVA 356
                 89999999999999999999*************************99985223..444556655555 PP

>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1     2e-08   6.1e-05      30     190 ..      70     235 ..      47     267 .. 0.80
   2 !   12.9   0.0     1e-05     0.031     297     347 ..     289     339 ..     275     352 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2e-08
       Actin  30 ipslvgkprgrkveaklyvgde..alt..krpelevrspvedGvvedwdaveelwehvlkee.lkvdpeehpllltepplnppkqrekalEivfEkfkv 123
                  p++v++++g+k+   l vg+e   +     ++++  +p++dGv++d   +e +++  +++   + + +  +++++ p+  ++ +r  + E    + + 
  CCG92006.1  70 EPTVVAVYQGTKN--VLAVGEEakRMLgrTPGNITAVRPLKDGVITDFHLTESMLKAFIHKVqSHFHLRRPRVVVAVPSGITEVERRAVQES-AKHAGA 165
                 5999999999975..99****95523343367899999*******************99998455566677777777777777777777775.58999* PP

       Actin 124 palylaksavlsafasgks.....tglvvDsGasvtsvvpV.ldGyvLkkairrsdlgGkaLteqlkellssk 190
                   ++l+++++ +a   g+        +++D+G ++t v+ + l G+v ++++    ++G+ ++e + ++l++ 
  CCG92006.1 166 REVFLVEEPMAAAIGVGLPvheasGNMIIDIGGGTTEVAIIsLSGIVYSRSV---RVAGDEMDEAIVNYLRRA 235
                 *****************998888888************99955788777766...59*********9999984 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1e-05
       Actin 297 eekskllgiselivaainacdvdlrpeLlan.ivvtGGnsllpglteRleke 347
                 + ++ ++ i e ++ ++++c+++l ++L+++ iv++GG +ll+g+  Rl +e
  CCG92006.1 289 AMMDPISVIVESVRVTLERCPPELSADLVERgIVLAGGGALLRGID-RLLAE 339
                 336667789999*****************976************85.54443 PP

>> PilM_2  Type IV pilus assembly protein PilM;
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0033       9.8      26      74 ..     102     149 ..      79     162 .. 0.84
   2 !   14.8   0.1   3.6e-06     0.011     179     229 ..     188     242 ..     150     261 .. 0.80
   3 !   11.5   0.0   3.7e-05      0.11     278     306 ..     321     349 ..     313     372 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0033
      PilM_2  26 laieplekdavvdreikdieavsealkrvvkklktrvkevaiavpgsav 74 
                  a+ pl+ ++++d ++++   +++ +++v ++++ r  +v++avp+  +
  CCG92006.1 102 TAVRPLKDGVITDFHLTE-SMLKAFIHKVQSHFHLRRPRVVVAVPSGIT 149
                 689999******999987.579***********************8765 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 3.6e-06
      PilM_2 179 ekvvaivdigasrttlsvlrdgkivYtreqafGgeqltqeiv....rrYglslee 229
                 ++  +i+dig  +t++++++ + ivY+r     g+++ + iv    r Y+l   e
  CCG92006.1 188 ASGNMIIDIGGGTTEVAIISLSGIVYSRSVRVAGDEMDEAIVnylrRAYNLMIGE 242
                 55679**********************************9983333457776554 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 3.7e-05
      PilM_2 278 ilLaGGtaslpgleelleeelgisttvan 306
                 i+LaGG a l g+++ll+ee+ +++ +a+
  CCG92006.1 321 IVLAGGGALLRGIDRLLAEETALPVYIAE 349
                 9************************9995 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.024        71     178     203 ..     112     137 ..      99     145 .. 0.90
   2 !   14.2   1.0   5.4e-06     0.016     116     176 ..     171     232 ..     149     267 .. 0.66
   3 ?    1.1   0.0     0.054   1.6e+02     254     297 ..     296     340 ..     278     348 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.024
         DDR 178 ledrelaEdiKkyplakveslfhire 203
                 + d++l+E++ k  + kv+s fh+r+
  CCG92006.1 112 ITDFHLTESMLKAFIHKVQSHFHLRR 137
                 6899*******************996 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 5.4e-06
         DDR 116 vEaemAilGalttPGt.ekplailDlGaGstDaalieeegevkavhlAGAGemvtlliaseL 176
                 vE  mA+      P    +  +i+D+G+G+t+ a+i+ +g v +  +  AG+ +  +i + L
  CCG92006.1 171 VEEPMAAAIGVGLPVHeASGNMIIDIGGGTTEVAIISLSGIVYSRSVRVAGDEMDEAIVNYL 232
                 5555555444555544156789********************99888888887766665444 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.054
         DDR 254 vfvtnalRalkkvsptgnirdidf.vvlvGgsalDfEipelvtda 297
                 v+v+ +  +l++  p+ +   ++  +vl+Gg+al   i +l++++
  CCG92006.1 296 VIVESVRVTLERCPPELSADLVERgIVLAGGGALLRGIDRLLAEE 340
                 56666666788888888777776449********99999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2739.59
//
Query:       CCG92007.1  [L=303]
Description: Rod shape-determining protein mreC [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-32  111.4   0.0    5.2e-32  110.8   0.0    1.3  1  MreC            rod shape-determining protein MreC
    0.00097   19.5   0.7     0.0023   18.3   0.7    1.6  1  ZapB            Cell division protein ZapB
  ------ inclusion threshold ------
      0.027   15.1   0.6      0.055   14.1   0.6    1.4  1  YabA            Initiation control protein YabA
       0.92    9.7   7.2        1.1    9.4   0.8    2.5  2  NYD-SP28_assoc  Sperm tail C-terminal domain


Domain annotation for each model (and alignments):
>> MreC  rod shape-determining protein MreC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.0   1.1e-35   5.2e-32       1     149 [.     141     297 ..     141     298 .. 0.93

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 1.1e-35
                 EEEE-GCCTTTEEEES--GGGT..--TT-EEEETTEEEEEEEEE-SS-EEEEETTSCCE.EEEEEE.CTTEEEEEE...EETTTTEEEEEEE.CT-..- CS
        MreC   1 VisrspdnwnssltIdkGskdg..vkkgmpVvsgkglVGkVtevgknssrVllitdssssvsvkvkrtgergileg...kddekkeleleylpkeaadv 94 
                 Visr+p+nw++ l Id+G +d   +  + pVv++ g+VGk   v +++ +V+l+t++++++s++++ ++++g++ g   + ++k + ++ ylp++ ++v
  CCG92007.1 141 VISRDPTNWWNDLLIDVGWADDneLYSDLPVVTPRGVVGKTGIVARHTTEVILLTNENCKISAMTEVSKDQGLVVGagtNGENKPYSRMIYLPRN-SQV 238
                 9*****************887767***************************************8886777899988776445688889999*999.9** PP

                 -TT-EEEEE-TTSSS-CCEEEEEEEEEEE....-TTSSEEEEEEEESS--SS--EEEEE CS
        MreC  95 kkgdlvvTsglggvfpkglpvGtVekvee....dkeglfkkievkpavdfdkleeVlVi 149
                  +g++v+Tsglggvfp+gl++G V ++e+     + gl++++ +   vd+++l+e++Vi
  CCG92007.1 239 GVGERVLTSGLGGVFPPGLYIGSVIQLEPldasHNFGLYREVILDTGVDLTQLNEMFVI 297
                 ****************************9998777799********************8 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.7   5.1e-07    0.0023      16      53 ..      84     124 ..      80     148 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.1e-07
        ZapB  16 aidtitlLqmeieeLkeeneelkeenrele...eeneqlke 53 
                  + t+++ q e++eLk++n++l+ en  l+   +ene+lke
  CCG92007.1  84 SLKTLDQVQLELKELKAKNAQLAMENSYLThlrQENERLKE 124
                 57899999******************9999999******97 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.6   1.2e-05     0.055      20      60 ..      84     124 ..      71     139 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXX CS
        YabA  20 lleeleelkeelaelleenaeLeleneklrerleeeekkek 60 
                  l++l++++ el+el  +na+L +en+ l ++ +e+e+ ++
  CCG92007.1  84 SLKTLDQVQLELKELKAKNAQLAMENSYLTHLRQENERLKE 124
                 45556666666666666666666666666555433333332 PP

>> NYD-SP28_assoc  Sperm tail C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.8   0.00025       1.1      17      54 ..      70     107 ..      67     112 .. 0.94
   2 ?    3.2   1.0     0.022        97      43      56 ..     113     126 ..     107     128 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00025
  NYD-SP28_assoc  17 lWdalekaLekYhevLteRaklieetesLekqNeeLrn 54 
                     +Wd   k + +Y + L+   ++  e ++L+++N++L +
      CCG92007.1  70 IWDKTVKTIDDYTSSLKTLDQVQLELKELKAKNAQLAM 107
                     7**********************************975 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.022
  NYD-SP28_assoc  43 esLekqNeeLrnlL 56 
                     ++L+++Ne L+++L
      CCG92007.1 113 THLRQENERLKEML 126
                     68*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       966  (0.0538792); expected 358.6 (0.02)
Passed bias filter:                      726  (0.0404931); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2084.64
//
Query:       CCG92008.1  [L=182]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.007   16.4  25.1     0.0091   16.1  25.1    1.2  1  MreD      rod shape-determining protein MreD


Domain annotation for each model (and alignments):
>> MreD  rod shape-determining protein MreD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1  25.1   5.1e-07    0.0091       7     158 ..       5     155 ..       1     174 [. 0.72

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.1e-07
        MreD   7 wlllislfllalvlglipmpvstlvlrPhflllvllywvialpervgiitafvlGllyDvlygsllGvyalvlslilylvaklqkvlrlnr...rflpa 102
                 +ll++++ +l+++ ++i     +   +P+  +l+++y ++ +p  ++ ++++  G+l D+l  +++G ++l l+l+  +++ l+ ++ +      ++p+
  CCG92008.1   5 FLLFLFIGFLSIFGQMIMPDLPFFYAKPEVSALFVIYFTLRMPFFYAFGFSLYTGILSDLLIPGIFGTTTLSLILLFLFISILKPLFEK-IgnyWMFPL 102
                 334444334444444455556699*********************************************************99999998.333334443 PP

        MreD 103 vlqvll.lellvlvialliglaeldligfvvyrllPtlllnf.llailLvppvfkLlr 158
                      + + +++lv +ll+ l      + ++    +t  +++ +l++l+ +p+f+ ++
  CCG92008.1 103 YG--SVgIFFYSLVSYLLFELENH-QWYWSLEP--WTKCVSIsFLSALFSIPLFLIMD 155
                 33..33244445555555555544.56666666..77755542556667777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1419.36
//
Query:       CCG92009.1  [L=675]
Description: Cell division protein FtsI [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-79  266.1   0.0    4.8e-79  265.7   0.0    1.1  1  Transpeptidase  Penicillin binding protein transpeptidase dom
    2.1e-30  106.4   0.0    3.6e-30  105.6   0.0    1.4  1  PBP_dimer       Penicillin-binding Protein dimerisation domai


Domain annotation for each model (and alignments):
>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.7   0.0   5.4e-83   4.8e-79       1     306 []     294     621 ..     294     621 .. 0.95

  Alignments for each domain:
  == domain 1  score: 265.7 bits;  conditional E-value: 5.4e-83
                     EEEEEEETTT-BEEEEEEESE-TTTHHCC.............TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS.E CS
  Transpeptidase   1 gaavvldaktgevlamaskpsydpnakvg.............kneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqsi 82 
                     gaavv+d++tg++lam s p++dpn ++              + +pl nra  s y+PGStfK ++++aal++g+i+p+++++++ +   gg  +
      CCG92009.1 294 GAAVVVDPNTGDILAMCSVPNFDPNDFIPkisqenwqklttdPTNPLVNRA-ISSYPPGSTFKLLISLAALKSGAITPKTVINSPAAIDIGGHLF 387
                     79**************************99********************5.567*******************************99999999* PP

                     CTCCCC-SSSSEEEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--.B--SSH..........HHHHHHHHTTT...SB CS
  Transpeptidase  83 kdweqdnkgsegitlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaG.vptrkw..........legatisfgiG...lt 163
                      dw+++    ++itl + +++S+nt+f+++  ++g + ++++++  g+G+ tgi lpges G vp ++w          + + t++++iG   l+
      CCG92009.1 388 HDWTKTG--RGNITLYDGIRYSCNTFFYQVGIRTGIQNIEQMANVAGFGQLTGIPLPGESPGiVPGPEWmkqkypmerwSTAHTANVSIGqgfLQ 480
                     ******6..789**************************************************99999**88888888887788889999888*** PP

                     B-HHHHHHHHHHHHTTTEEE--BSEEEEEECTT..EEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCGTCTTS--EEEEEEEEECSSST CS
  Transpeptidase 164 vtplqlaqayaaiangGklvkPhlvkaivdpdg..vrkvkpkelnklpisketaekvkeglkgvvsrgsgtataavegykvagKTGTAevagkkg 256
                     vtplq+a ++aaiangG+l  P++v+++ +++g  ++ v ++++ +l+++++++e vk ++ gvv++g+g +++ +eg+kvagKTG A+  +k +
      CCG92009.1 481 VTPLQMALFVAAIANGGTLFYPRIVQGVSNNKGeiKIAVPSRVHSQLDVNPQDLEAVKSAMLGVVEEGTGANAK-IEGIKVAGKTGSAQATKKLN 574
                     ****************************99999999999*****************************888877.****************9999 PP

                     TSEEEEEEEEEEEEEESTTS-SEEEEEEECTCSSSSSCCHHHHHHHHHHH CS
  Transpeptidase 257 ngkkegakiswfvgyapadnpkyavavlieqpkeaaggkaaapiakkile 306
                     n+ ++ ++ +wfvg+ap++ p+ya+ +l+e +   +gg+ aapiakkile
      CCG92009.1 575 NKLYK-DTRAWFVGFAPYESPRYAFCILVEGGI--SGGATAAPIAKKILE 621
                     98776.459************************..*************96 PP

>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.0     4e-34   3.6e-30       3     178 ..      60     260 ..      58     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 4e-34
                 EE----EE-TTS-EEEEEEEEEEEEEEESSS-HHHHHHH..................HHHHHHHCHHHTTS-HHHHHH.................HHCC CS
   PBP_dimer   3 papRGeIyDrngrlLAtnrpsytltitpsklkkkkalek..................ikklaklleseenldderlee.................lalk 66 
                  ++RG I+D+ng+ LA+nr  +++ +  ++l ++   ++                  +       ++e ++ ++ +++                 + ++
  CCG92009.1  60 AGARGPILDKNGVGLAENRAMFEIDLYLDELVRDFPRRHkgktprievqrmmggnvvL-------RKEPDIYKIVMTDlspilkalrlavkldpkELQR 151
                 578*********************9999888887666667999*99966654444440.......5555555555555555555666666665544666 PP

                 CCTSSTTSCECCCCCEECHHHCCCHHHHHCSTT-EEEEEEEEEETTTSTTHHHH-EEEEC-HHHHHCCCCHTCCTTCEEEESHHHHHTHHHHHECCCEE CS
   PBP_dimer  67 knsykaykpvviaediseeevarikenakdlpGinievepkRyYpkgelaahvlGyvgkiteeelekykekgyssgdliGksGlEkqyEeeLrGkkGkr 165
                     ++++p  +++d+++++var++e++  +pGi+i+v+p+RyY +g+la+hv+Gyv +   ++ ek +  +  + d++Gk G+E++++ +L+Gk G r
  CCG92009.1 152 HYFTSPSVPYSLRTDLDYATVARFEEQNLGVPGIDIAVKPIRYYNYGALASHVIGYVAAP--DDKEKVSP-DGIALDMVGKWGIERYMDGQLQGKPGGR 247
                 77789999****************************************************..66666654.56789*********************** PP

                 EEEEECTSSCCEE CS
   PBP_dimer 166 qvkvdarGrilee 178
                 + kv+ rG i++e
  CCG92009.1 248 ILKVNYRGYIVNE 260
                 *********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4663.43
//
Query:       CCG92010.1  [L=393]
Description: Rod shape-determining protein rodA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-79  265.2  29.7    9.4e-79  265.0  29.7    1.0  1  FTSW_RODA_SPOVE  Cell cycle protein


Domain annotation for each model (and alignments):
>> FTSW_RODA_SPOVE  Cell cycle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.0  29.7   5.3e-83   9.4e-79       2     354 ..      30     387 ..      29     392 .. 0.93

  Alignments for each domain:
  == domain 1  score: 265.0 bits;  conditional E-value: 5.3e-83
  FTSW_RODA_SPOVE   2 allllvllllvilGlvmiysaslveslvlfgdsfvlfirqlvylllglivfvlllriplkfleklakllliislllLvlvkvplgssanGAkrW 95 
                      + l+l++l+l+++G+ +iysa + + +  f       + q+++l+lgl++f++++  +++fl k++ +ll+ ++ lLvlv + +g+++nGAk+W
       CCG92010.1  30 WFLFLIVLALSFFGIAVIYSATYSSPSAEFR---NAPFSQFLWLMLGLVIFFIVSFTDYHFLVKWSWILLLLTIPLLVLVLL-IGQTVNGAKSW 119
                      678899999999***********88888888...45668*******************************************.*********** PP

  FTSW_RODA_SPOVE  96 irlggisiqPsEfvkialilflAavlskkkkevksrlrellillv.ivllilvlillqpdlgtavllliillvvlflsglslklilaivlalil 188
                      +r+g i i P+E+ k+a+ilf +  l +    +k+r++  ++ l  +vl+++vlil qp lg+a +++ il++ lf+ gl+ +++++ ++++++
       CCG92010.1 120 LRFGPIGIEPAELCKLAFILFGSFWLDR----FKHRPTISFLTLCfVVLIPFVLILKQPALGSAGVFIPILFAQLFIGGLKKRYLAIPLILILA 209
                      ****************************....66666666666555999*********************************999887777777 PP

  FTSW_RODA_SPOVE 189 viaivll.........illedyqvkrvtslldpfkdplgsgYqviqsliAigsGGllGkGlgnsqq.kleyLPe..ahtDfIfavigEelGlvG 270
                      v+  +++           l++yq++r+ ++ dp  dplgsg+ + qsliAigsG + GkG+ +++q  l++LP+  a +DfIf+vigEe+G++G
       CCG92010.1 210 VLLYAYIgvshlgwdiPGLKPYQMNRIRTFFDPNLDPLGSGWTINQSLIAIGSGSFSGKGFLKGTQnMLGFLPKniAYNDFIFSVIGEEWGFIG 303
                      7777777878888887778999********************************************99*****733689*************** PP

  FTSW_RODA_SPOVE 271 vllllllffllivrglriarkakdrfgsllavgivllivvqsfinigmvlGllPvtGltlPflSyGGsSllalliligillnis 354
                        ++++  +++++  lr a+ akd +gsl+a g++++++ + f+nigm++ ++P+tG++lPf+SyGG+ l++ li++g++ +i 
       CCG92010.1 304 GSAVIIGEGIMLLLCLRAAFYAKDLVGSLVAGGVAAMLFTHIFVNIGMTIKVVPITGIPLPFISYGGTFLIICLIGLGLVESIW 387
                      ********************************************************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 2624.42
//
Query:       CCG92011.1  [L=523]
Description: Ribonuclease G and E [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-99  332.2   2.4    3.3e-99  331.7   2.4    1.2  1  RNase_E_G  Ribonuclease E/G family


Domain annotation for each model (and alignments):
>> RNase_E_G  Ribonuclease E/G family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.7   2.4  1.9e-103   3.3e-99       1     270 []     149     419 ..     149     419 .. 0.99

  Alignments for each domain:
  == domain 1  score: 331.7 bits;  conditional E-value: 1.9e-103
   RNase_E_G   1 slaGrylVllpegkkvgvSkkiedeeererlkelleelk.peevGlIvRtaaegaseeelekdleelkkkweeilekakkrkapsllyeeedlllrvlr 98 
                 +laGrylVl+p++++ g+S+kied +er rl+++l+el+ pe++GlI+Rt ++g+++  + +dl+ l +kw+ei++k+k+  ap lly e+dl++r++r
  CCG92011.1 149 TLAGRYLVLMPFNEQFGISRKIEDPKERVRLRKILNELRiPEGMGLIIRTVGAGQKTRYFIRDLAILLQKWNEIERKMKEYPAPILLYMEPDLIERTVR 247
                 69*********99999*******************9999999********************************************************* PP

   RNase_E_G  99 dllnedieeivvddkelyeeikeyleevapeleekvelyeeeeplfelysiekqiekalsrkvwlksGgylvIeqTEAltvIDVNsGkftgkknleetv 197
                 d+l++d+e+i+vd+++++++ik+ ++ ++++ ++k+ +y+e  plfe+++ie+qi++a+ rkv+l+sGgy++I++TEAl++IDVN+Gk++  k++++t+
  CCG92011.1 248 DFLTDDVEKIYVDNEQEVKRIKDLVAAISKRSQRKIIYYNEPIPLFEKLNIERQIDTAFMRKVELPSGGYIIIDETEALVAIDVNTGKAKVGKDQDNTI 346
                 ***************************************8888**********************************************99999***** PP

   RNase_E_G 198 lktNleAaeeiarqlrLRnlgGiIviDFIdmkeeenreevleelkealkkDraktqvleitklgLveitRkrv 270
                 lktN+eAa+ei rqlrLRn+gG++viDFIdmk++++++ v+e+lke+++kDrak+++l+i+++gLve+tR+rv
  CCG92011.1 347 LKTNIEAAKEISRQLRLRNIGGLVVIDFIDMKSRKEQHLVFEQLKECIRKDRAKINLLPISAFGLVEMTRQRV 419
                 ***********************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3669.18
//
Query:       CCG92012.1  [L=421]
Description: Seryl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-34  119.0   0.0    3.6e-34  118.3   0.0    1.3  1  tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, 
    8.1e-23   80.7   5.4    1.4e-22   80.0   5.4    1.4  1  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
  ------ inclusion threshold ------
      0.017   15.2   1.0      0.032   14.3   1.0    1.4  1  DUF1664       Protein of unknown function (DUF1664)
      0.035   14.0   0.7      0.074   12.9   0.7    1.5  1  PCRF          PCRF domain
       0.12   11.3   4.2       0.21   10.4   4.2    1.3  1  Spc7          Spc7 kinetochore protein
        1.4    9.0   9.7        3.5    7.7   9.7    1.7  1  TMF_DNA_bd    TATA element modulatory factor 1 DNA binding


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.0   1.2e-37   3.6e-34       7     179 .]     222     399 ..     217     399 .. 0.96

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 1.2e-37
                   TSEEEEE-SSSHHHHHHHHHHHEEEBGGSSEEEEEEEEEEBTTTS....TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SCE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   7 ndreyiLkPtneetfvelirdevlrskrLPlklyqiqtkyRdEks....dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglefr 99 
                   n++ ++L+Pt+e ++++l+r+e+l +  LPl+++++++++R E+     d+rG+lR+++F++ + + + ++++++  l++++k +++++++l l +r
    CCG92012.1 222 NNDGLYLIPTGEVPLTNLHREEILSESSLPLRYVAYTPCFRLEAGsagkDTRGILRLHQFDKVELVQITKPEDSYGALEEMVKHAENVLQALNLCYR 318
                   6799******************777777****************66999************************************************ PP

                   EEEEEGTTSCBTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEEE.EEHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  tRNA-synt_2b 100 aiielmsaksadykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksvimicaa.igveRllsaileqn 179
                   ++++  +++ + +++ +++e++   +++ +ei+++++l++ +++r++++++ + +++   ++++ +  ++ Rl++aile+n
    CCG92012.1 319 VVLLASEDMGFGAAKCYDIEVWAAGIQSWLEISSVSNLENFQARRMNLRYKSSSGKNILCHTLNGSgTALPRLVAAILENN 399
                   ***998888899****************************************************99999**********98 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   5.4   4.7e-26   1.4e-22       1     108 []       1     109 [.       1     109 [. 0.99

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 4.7e-26
                   ---HHHHHH-HHHHHHHHCCCT.CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   1 MLDiklirenpeavkeklkkRg.edkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleae 96 
                   MLDi+lir n+ ++k kl +R  + + +vd+++ ld+k+r+lq+e+e+ +a rN+ sk+Ig +k ++e+ ee     ke++ +++++e+el++le +
    CCG92012.1   1 MLDINLIRYNLLETKHKLSSRAkNLAPLVDQVYTLDSKKRNLQTEIEKWRALRNKQSKAIGLKKLQGEKVEEEFGALKEIGFKIEEKEKELANLEIQ 97 
                   *********************989999********************************************************************** PP

                   HHHHHCTS---- CS
  Seryl_tRNA_N  97 leklllaiPNip 108
                   l++lll++PN+p
    CCG92012.1  98 LNSLLLSLPNLP 109
                   **********98 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.0   1.1e-05     0.032      35     120 ..      14     101 ..      10     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.1e-05
     DUF1664  35 TkrslsdavesvskqleqvseslaatkrhLssridr...vdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleri 120
                 Tk+ ls+  ++++  ++qv+ +l + kr+L+ +i++   + +k+ + + ++k   e+v+e  + l+eig ++e+ ++   +le +l+++
  CCG92012.1  14 TKHKLSSRAKNLAPLVDQVY-TLDSKKRNLQTEIEKwraLRNKQSKAIGLKKLQGEKVEEEFGALKEIGFKIEEKEKELANLEIQLNSL 101
                 9******************9.69***********973347788888889999999****************************999986 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.7   2.5e-05     0.074      21      91 ..      29     103 ..      10     116 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
                 GGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT......-S-..-GG..GTHHHHHHHHHH..HHHHHT- CS
        PCRF  21 qekakklskelaeleeivealeeleealedleeakell.e.edeelaelaee..eleelekeleeleeelkklLl 91 
                  +++ +l ++ ++l++ +e++++l+++++++  +k+l  e  +ee+ +l+e   ++ee ekel +le +l++lLl
  CCG92012.1  29 VDQVYTLDSKKRNLQTEIEKWRALRNKQSKAIGLKKLQgEkVEEEFGALKEIgfKIEEKEKELANLEIQLNSLLL 103
                 457778899999************************9853566777766544446*****************998 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.2     7e-05      0.21     154     232 ..      14     101 ..       6     111 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7e-05
        Spc7 154 dkelLekqeeeldellpe...leeekaeleeeleklqe......aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleel 232
                  k +L+++ ++l  l+++   l+++k +l+ e+ek ++      +a  l++++ e++ee   +l+e+  +ieek+kela+l+ ql++l
  CCG92012.1  14 TKHKLSSRAKNLAPLVDQvytLDSKKRNLQTEIEKWRAlrnkqsKAIGLKKLQGEKVEEEFGALKEIGFKIEEKEKELANLEIQLNSL 101
                 566777777777777665222789999999999999995333333333445888888888899*********************9987 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   9.7    0.0012       3.5      16      71 ..      41      99 ..      35     101 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
  TMF_DNA_bd 16 qLmeEGekLskkelklnnti..kkLrkknkele.keikelkkkleklekeleeleerlk 71
                +L++E ek+++  +k++++i  kkL+ +  e e   +ke   k+e++ekel++le  l 
  CCG92012.1 41 NLQTEIEKWRALRNKQSKAIglKKLQGEKVEEEfGALKEIGFKIEEKEKELANLEIQLN 99
                79*****************8778999776666669999999**************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 2858.42
//
Query:       CCG92013.1  [L=725]
Description: Periplasmic protease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-54  182.6  11.0    9.7e-54  182.6  11.0    2.3  2  TSP_NTD        Tail specific protease N-terminal domain
    1.5e-43  148.3   0.0    2.9e-43  147.3   0.0    1.5  1  Peptidase_S41  Peptidase family S41
    9.1e-33  113.6   5.5    9.1e-33  113.6   5.5    2.7  2  DUF3340        C-terminal domain of tail specific protease (D
    3.8e-09   36.8   1.5    8.4e-09   35.7   0.9    1.9  2  PDZ            PDZ domain
     0.0046   16.8   0.6      0.027   14.3   0.6    2.2  1  PDZ_6          PDZ domain
  ------ inclusion threshold ------
      0.054   13.0   0.0       0.11   12.0   0.0    1.6  1  UCH            Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> TSP_NTD  Tail specific protease N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.6  11.0   3.2e-57   9.7e-54       2     193 .]      43     227 ..      42     227 .. 0.95
   2 ?    2.1   2.6     0.069   2.1e+02      85     134 ..     604     652 ..     567     698 .. 0.58

  Alignments for each domain:
  == domain 1  score: 182.6 bits;  conditional E-value: 3.2e-57
     TSP_NTD   2 vekLereHykkkklddelskkvfdrYlkqLDpqklyflqsDidefe.kyreklddalkngdlsfaeeiynlyqkrieerkeyikellkkpfdfskdetl 99 
                 ++ L+++H+++k+ d++ls+ +++ Yl+ LD ++++flqsDidef+ ky +kl d++ ++dl++a++iy++y +r+ er+++i+ ll+ p+df+kde++
  CCG92013.1  43 ASLLQQAHFSQKPADEKLSQVFLKDYLDALDFSHMVFLQSDIDEFNeKYGKKLFDYIYQEDLTPAFDIYSKYIHRLTERESLIEGLLAMPHDFTKDEYY 141
                 6789*********************************************************************************************** PP

     TSP_NTD 100 eldrekapwakneaelkelwrkrlkneilaelklkskkdkeikkskeelekryeeqlkrlsqrlekkksedvfelflnalassfDPHTsYfspk 193
                 ++dr+k+pw+k+e+e+k+lwrkr+k+e+l + kl+++k ++   +k+++++ry + lk++ +     +se++++ +lnal++++DPH++Y sp+
  CCG92013.1 142 QTDRSKMPWPKTEEEAKDLWRKRIKFELL-QGKLANEKPEQ---TKKTISRRYARLLKEMRE----ADSEEILDYYLNALTHAYDPHSDYQSPS 227
                 *****************************.77777544444...445999999999999999....**************************95 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.069
     TSP_NTD  85 ellkkpfdfskdetleldrekapwakneaelkelwrkrlkneilaelklk 134
                 +l++ +    k+e+ e+   k+++ + +ae+k    k ++++i  ++k+ 
  CCG92013.1 604 KLVSLNEAQRKKEKEEFALLKKNYETARAEQKSSYDKIYEYDIE-SVKNH 652
                 22222222223344444444445555555555555555555555.44444 PP

>> Peptidase_S41  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.3   0.0   9.8e-47   2.9e-43       2     165 ..     360     530 ..     359     531 .. 0.93

  Alignments for each domain:
  == domain 1  score: 147.3 bits;  conditional E-value: 9.8e-47
                    EEEEEES-BCCTHHHHHHHHHHHHHHTTSSEEEEE-TTB-EBEHHHHHHHHHCCSSSSEEEEEECTTSEEEEEEHTCSS-STT-BSSEEEEEE-TT CS
  Peptidase_S41   2 iGyiripsfsektkeelakalkelkkknvkglilDlRnNgGGlldeavelaslflddglivstrgrdgkkkkksktekaseevqykgplvvLvneg 97 
                    +G+i++p f e++++++a  +k+l+k++++gl+lDlR+NgGG l+eav+++ lf++dg++v++++ +g+ +      + + ++ y gplvvL+++ 
     CCG92013.1 360 LGVIQLPGFYEHASDDVALLIKRLEKEKISGLVLDLRKNGGGMLEEAVNMTALFIKDGPVVQVKDFRGRVQ--PFLISSN-RYCYGGPLVVLISRF 452
                    79**************************************************************9999999..3344444.678************ PP

                    BBTHHHHHHHHHHHTTSEEEEES-.-SB-EEEEEEEE-TT.........SSEEEEEEEEEEETTSBCTTTTS---SEE CS
  Peptidase_S41  98 saSaseifagalkdngratlvGer.tfGkgtvqsvvelnd.........gsalkltiakyltpdgrsiekkGvePdie 165
                    saSasei+a+al+d+gra++vG++ ++Gkgtvq++++l+d          + lk+t++k+++  g  ++++Gv+ di+
     CCG92013.1 453 SASASEIVAAALQDYGRAIIVGDQvSHGKGTVQTLISLSDfmpwdfhgdPGRLKVTVQKFYRITGLTTQQHGVASDIV 530
                    **************************************7777777777699*************************96 PP

>> DUF3340  C-terminal domain of tail specific protease (DUF3340)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.8      0.12   3.6e+02      40      90 ..     155     205 ..     130     235 .. 0.73
   2 !  113.6   5.5     3e-36   9.1e-33       2     154 ..     536     708 ..     536     709 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.12
     DUF3340  40 kksekRiakdpeFklleediawlkerkekktvsLnekkrkaereeqeakrl 90 
                 ++ +    k  +F ll+ ++a  k ++ kkt+s +++   +e+ e+++++ 
  CCG92013.1 155 EEAKDLWRKRIKFELLQGKLANEKPEQTKKTISRRYARLLKEMREADSEEI 205
                 444555556678999999999999999999999999999999997776654 PP

  == domain 2  score: 113.6 bits;  conditional E-value: 3e-36
     DUF3340   2 dyeeiGEssldnALpWDkIspanykkygki.aallpkLkkksekRiakdpeFklleediawlkerkekktvsLnekkrkaereeqeakrlarenerek. 98 
                 dy eiGEssl+n+Lp D+I+p+n++k+++  + ++p L+++s++Ri+++ +F +l+++i+ lk+++++k vsLne++rk+e+ee    +++ e +r + 
  CCG92013.1 536 DYLEIGESSLPNYLPADQINPMNFQKVNTGlSTIVPVLQRRSAQRISSSIDFIHLNSEIEVLKKKMSEKLVSLNEAQRKKEKEEFALLKKNYETARAEq 634
                 899************************99999***************************************************6666666666655559 PP

     DUF3340  99 ................akglkplksllleknlekeeelekedekeaeedd..pkdkekkDiylrEaanIlaDli 154
                                 +++++++ +++ ek  +  ++ +++ + ++e+ d   ++++k+D+++ E++n+l+D+i
  CCG92013.1 635 kssydkiyeydiesvkNHKEPKIITNTVEKTSPATDNSLEDTKILDEKFDdsLNSSPKNDFVMLETLNVLKDYI 708
                 99*************999999999996666555555555555555555555699******************98 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.9   2.8e-12   8.4e-09       8      81 ..     240     315 ..     234     316 .. 0.91
   2 ?   -2.6   0.0       2.4   7.2e+03      24      41 ..     652     670 ..     644     674 .. 0.64

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 2.8e-12
                 TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHT.SSTTEEEEEETT.....EETTTSHHHHHHHHHHTTTS.EEEEEE CS
         PDZ   8 grgglGfslkggsdqrgdkgifvsevlpggaaeadg.lkvGDkIlsvNg.....vdvenvsheeavqaikgskg.kvtLti 81 
                 +  g+G+ lk+++         + +++pgg+a+ d+ lk++D+I++v +     vdv+++ + ++v++i+g kg kvtL +
  CCG92013.1 240 SLTGIGAVLKSEEG-----YPKIVSLVPGGPADLDKrLKPNDRIVAVQQekgepVDVVDMKLNKVVEMIRGEKGtKVTLIV 315
                 56788999998777.....88999***********************99999***************************87 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.4
                 SSSSEEEEEECTT.SHHHH CS
         PDZ  24 gdkgifvsevlpg.gaaea 41 
                 ++++ ++++++++ ++a  
  CCG92013.1 652 HKEPKIITNTVEKtSPATD 670
                 4567788888888566654 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.6     9e-06     0.027       2      54 ..     257     315 ..     256     316 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9e-06
       PDZ_6   2 VtaVdpgsPAdrAG.lrvGDiilsvN...Gqpve..glsladvaallrgsagesvvlvv 54 
                 + + +pg+PAd    l+++D+i++v    G+pv+   ++l+ v++++rg  g++v+l v
  CCG92013.1 257 IVSLVPGGPADLDKrLKPNDRIVAVQqekGEPVDvvDMKLNKVVEMIRGEKGTKVTLIV 315
                 56789********99**********6444666542267777999999999999999876 PP

>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.6e-05      0.11      70     146 ..     171     539 ..     115     656 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.6e-05
                 SH-CCEE--HHHHHHHHHHSGG.GTSSSTCEHHHHHHHHHHHHHHHHCC......HCCCHHHHHHCCCTTSHHHHHH-EEEEE................ CS
                 xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
         UCH  70 kskskavsPkklkktlsklaks.fsgykqqDaqEflaflLdqlhedlnr......evaeekwkkhlkrndslitdlfegqlks................ 145
                 + k ++ +P++ kkt+s+ + + ++ ++  D++E+l + L+ l ++ +               ++++ + + i+  +                      
  CCG92013.1 171 QGKLANEKPEQTKKTISRRYARlLKEMREADSEEILDYYLNALTHAYDPhsdyqsP------SEAKNFEINSIKLSLT----Gigavlkseegypkivs 259
                 44566779********998888688*********************9993333330......3322222222222222....12222333444444444 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
         UCH 146 ................................................................................................... 145
                                                                                                                    
  CCG92013.1 260 lvpggpadldkrlkpndrivavqqekgepvdvvdmklnkvvemirgekgtkvtlivipadspddsvrksvtlvrdevklneqrakafvyektekdgkme 358
                 444444444444444444444444444444444444444555555555555555555555555555555555555555555555555555555566666 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
         UCH 146 ................................................................................................... 145
                                                                                                                    
  CCG92013.1 359 rlgviqlpgfyehasddvallikrlekekisglvldlrkngggmleeavnmtalfikdgpvvqvkdfrgrvqpflissnrycyggplvvlisrfsasas 457
                 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 PP

                 .................................................................................E CS
                 .................................................................................x RF
         UCH 146 .................................................................................k 146
                                                                                                  +
  CCG92013.1 458 eivaaalqdygraiivgdqvshgkgtvqtlislsdfmpwdfhgdpgrlkvtvqkfyritglttqqhgvasdivfpslddylE 539
                 5555555555555555555555555555555555555555555555555555555555555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1231  (0.0686597); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 4898.96
//
Query:       CCG92014.1  [L=91]
Description: protein chain initiation factor IF-1 (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-22   77.3   0.0    6.8e-22   77.1   0.0    1.1  1  eIF-1a    Translation initiation factor 1A / IF-1
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.025   14.3   0.0    1.2  1  RsgA_N    RsgA N-terminal domain
       0.13   12.6   0.0       0.19   12.1   0.0    1.3  1  S1        S1 RNA binding domain


Domain annotation for each model (and alignments):
>> eIF-1a  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   1.1e-25   6.8e-22       1      64 []       7      70 ..       7      70 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 1.1e-25
                EEEEEEEEEEETTTEEEEEE.SSSSBEEEEE-HHHH.CT----TT-EEEEEE-TT-TTEEEEES- CS
      eIF-1a  1 gevigkViealgnnlfrVelpdngkevlaeipgkfR.nkiwikrGdyVlVelspydltkGrIvyr 64
                +e +g+++ +l++ +frVel dn+++vla+i+gk+R n+++   Gd+V  e+sp dltk+rI yr
  CCG92014.1  7 IELEGTIVAILPGTMFRVEL-DNKHQVLAHISGKMRkNFVRLTYGDRVKLEMSPHDLTKARILYR 70
                5889****************.7******************************************8 PP

>> RsgA_N  RsgA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.2e-06     0.025       1      47 [.      10      58 ..      10      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.2e-06
      RsgA_N  1 eGlIikal.sgfYyVk.eegeiyecRaRGkFRkkkisplVGDrVefele 47
                eG+I+  l + ++ V+ ++++ + + + Gk Rk+ ++   GDrV+ e  
  CCG92014.1 10 EGTIVAILpGTMFRVElDNKHQVLAHISGKMRKNFVRLTYGDRVKLEMS 58
                67888777356899*9677799**********************99865 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.2e-05      0.19       8      70 ..       9      67 ..       7      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.2e-05
                EEEEEEEEET.TEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEE CS
          S1  8 veGeVtsvtk.gGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrri 70
                +eG+++ + +   ++Vel+n+++++ ++s  +r+     +  +l+ Gd+vk++    d +++ri
  CCG92014.1  9 LEGTIVAILPgTMFRVELDNKHQVLAHISGKMRK-----NFVRLTYGDRVKLEMSPHDLTKARI 67
                799999999966788**************99988.....9999999999999888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 830.93
//
Query:       CCG92015.1  [L=291]
Description: Zn-dependent hydrolase of the beta-lactamase fold [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-41  140.2   0.0    7.3e-41  139.9   0.0    1.1  1  Lactamase_B_2  Beta-lactamase superfamily domain
    5.4e-30  104.4   0.0    6.6e-30  104.1   0.0    1.1  1  Lactamase_B_3  Beta-lactamase superfamily domain
    1.4e-06   28.5   2.8    3.4e-06   27.2   2.8    1.7  1  Lactamase_B    Metallo-beta-lactamase superfamily
    0.00018   21.0   0.0    0.00025   20.5   0.0    1.2  1  Lactamase_B_6  Metallo-beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.9   0.0   1.6e-44   7.3e-41       1     201 []      63     250 ..      63     250 .. 0.90

  Alignments for each domain:
  == domain 1  score: 139.9 bits;  conditional E-value: 1.6e-44
                    SEEEES--TTHHHHHTCGGS--S.SS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSE CS
  Lactamase_B_2   1 rriLiDagpdlrqqalralqPve.lrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvheldwges 95 
                    ++iLiD+ ++      r+l+++  ++d lp+id+Vl+thaH+DHl +  tl+ +++ + p+++pkgv   ++           +++++ e++w+e+
     CCG92015.1  63 HNILIDPNWSNWMLIIRRLKRAGiALDALPSIDLVLITHAHFDHL-NKKTLKMIAK-NQPIIVPKGVKNLVRGI---------GFEKILEMNWWER 147
                    8*********666645555566679********************.4577777543.479*********99999.........4778999****** PP

                    EEECSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEECTTEEEEEESS-S---..HHHHHHHCT-SEEEEE-S-SSTTHHHHHHT---STSHHHHCT CS
  Lactamase_B_2  96 felgdggleitatparhksgrrldrnagdtlGlriegggkrvyyigDtgyip..eeigerlggadllllditayeddemirhmgHltpeeaveaaa 189
                    +e++  g eit+tpa+h+++r l++ +    G++++ +g++vy++gDt+y++   eigerl+ ++++l++i+ y++ +   +++H++pe+av+a++
     CCG92015.1 148 IEID--GTEITFTPAKHWGARVLADFHRGYGGYCLKFDGRSVYHCGDTAYFEkfSEIGERLH-PEVVLMPIGSYDPPS--GRDVHINPEKAVQAFQ 238
                    ***8..679************999****************************999*******.899999*******66..48************** PP

                    TSSSSEEEEESB CS
  Lactamase_B_2 190 dlgakrlvliHi 201
                    +l+ k+++++H+
     CCG92015.1 239 ELRGKIMIPMHF 250
                    ***********7 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.0   1.5e-33   6.6e-30       2     163 .]      48     249 ..      47     249 .. 0.89

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 1.5e-33
  Lactamase_B_3   2 ltwlghnsflletagarilvDPf........kanlgyeppa...........eeaDlvlisqaledHahletlkqlaenvkvlee........... 67 
                    ltw+gh+sfll+t   +il+DP         +        +           +++Dlvli++a+ dH + +tlk +a+n +++ +           
     CCG92015.1  48 LTWVGHASFLLQTHKHNILIDPNwsnwmliiR--------RlkragialdalPSIDLVLITHAHFDHLNKKTLKMIAKNQPIIVPkgvknlvrgig 135
                    8*********************9666666651........233444455558************************99999999889999999999 PP

  Lactamase_B_3  68 .........geslevggleiravatshdavggs..ergenngflleqdgltiyhlGhlahelsseelkelgrvDvvltPvgg.......pltlgqe 145
                             +e +e++g+ei+ ++++h++        +++ g+ l+ dg ++yh G++a+  +++e+ e  +++vvl+P+g         + +++e
     CCG92015.1 136 fekilemnwWERIEIDGTEITFTPAKHWGARVLadFHRGYGGYCLKFDGRSVYHCGDTAYFEKFSEIGERLHPEVVLMPIGSydppsgrDVHINPE 231
                    999999999999***************87754422447799**************************9999****************9999***** PP

  Lactamase_B_3 146 ealelakrLkpklvlPmh 163
                    +a+++ ++L+ k+++Pmh
     CCG92015.1 232 KAVQAFQELRGKIMIPMH 249
                    *****************9 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   2.8   7.5e-10   3.4e-06       2     162 ..      49     204 ..      48     273 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 7.5e-10
                  CCCSSEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSG...GGGEEEEE-SBSSHHHHT..TGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHC CS
  Lactamase_B   2 gpdpvnsyliegdggviLiDtGtsteaaraalelaalglk...pkdvdavilTHlHlDHiG..glgglveatdvpvgavaeeapalfmeeaddaasrk 94 
                  +++++ s+l+++ +++iLiD+ +s+ ++++ ++l+++g+    +  +d v++TH+H+DH     l+ +++  ++ v +  + +  ++++e+       
   CCG92015.1  49 TWVGHASFLLQTHKHNILIDPNWSN-WMLIIRRLKRAGIAldaLPSIDLVLITHAHFDHLNkkTLKMIAKNQPIIVPKGVKNLVRGIGFEKIL----- 140
                  5678899**************6655.555555566666651115689*************633788888888888888888888888888855..... PP

                  CHHTTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC CS
  Lactamase_B  95 glllagvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridl 162
                      +  ++   ++d  e +++ + +++  v   +  g g++++ ++g++v  +GD+ + ++  +i++
   CCG92015.1 141 ----EMNWWERIEIDGTEITFTPAKHWGARVLADFHRGYGGYCLKFDGRSVYHCGDTAYFEKFSEIGE 204
                  ....3478999***********************************************9888777776 PP

>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   5.6e-08   0.00025       1      87 [.      57     139 ..      57     163 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5.6e-08
  Lactamase_B_6   1 lLeldnvkiLlDvGwdeskvslesalkelek...viptvdliLLshatlehlGayallyakfksklllnipvyatlpvvkLGrvslldly 87 
                    lL+  + +iL+D+ w+++ + + + lk       ++p++dl+L++ha  +hl       +k  + + +n p+  ++ v++L r   ++++
     CCG92015.1  57 LLQTHKHNILIDPNWSNWMLII-RRLKRAGIaldALPSIDLVLITHAHFDHLN------KKTLKMIAKNQPIIVPKGVKNLVRGIGFEKI 139
                    6888899**********96643.3444333223368***************99......3445567788888888888888876666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2182.06
//
Query:       CCG92016.1  [L=355]
Description: Zn-dependent hydrolase of the beta-lactamase fold (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-28  100.1   0.0    1.6e-28   99.7   0.0    1.2  1  Lactamase_B_3  Beta-lactamase superfamily domain
     0.0066   16.0   0.0      0.011   15.2   0.0    1.3  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.0   1.8e-32   1.6e-28       2     163 .]     141     304 ..     140     304 .. 0.95

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 1.8e-32
  Lactamase_B_3   2 ltwlghnsf.lletagarilvDPfka.nlgyeppa.eeaDlvlisqaledHahletlkqlaenvkvleegeslevggleiravatshdavggserg 94 
                    ++w+gh+ + l+++ g+r+++DP+ + +++y+ p   +aD+vlis++ ed  + e+l +  ++++ ++  +  +++g  +++++t  d+++gs  g
     CCG92016.1 141 VRWYGHAFVyLISSTGVRVAIDPYGEdTVKYKFPDrLQADVVLISSESEDRSAGEKLFGTPQIFRSITAVGPNNARGHIFKGIQTFRDKSQGSLHG 236
                    78*****76155557*********9999999988758**********************99999******************************** PP

  Lactamase_B_3  95 enngflleqdgltiyhlGhlahelsseelkelgrvDvvltPvggpltlgqeealelakrLkpklvlPmh 163
                    +n++f+++ d ++++hlG+lah+l++++l+e+grvDv+++P+g + tl++ee  ++a  L +++++P++
     CCG92016.1 237 KNTAFVFKLDRVNFAHLGDLAHPLNQDQLAEFGRVDVLFLPIGNE-TLSNEELDKIALDLGARIIIPIA 304
                    ******************************************999.99*******************85 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-06     0.011     117     165 ..     230     279 ..     204     303 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-06
                    TCCE-TTTSEEEEEECTTEEEEEESS-S---.HHHHHHHCT-SEEEEE-S CS
  Lactamase_B_2 117 rldrnagdtlGlriegggkrvyyigDtgyip.eeigerlggadlllldit 165
                     +++ +g++ +++++ ++ +++++gD+++   ++  +++g +d+l+l+i+
     CCG92016.1 230 SQGSLHGKNTAFVFKLDRVNFAHLGDLAHPLnQDQLAEFGRVDVLFLPIG 279
                    56678999********************755566677***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2625.13
//
Query:       CCG92017.1  [L=433]
Description: Phosphoribosylamine-glycine ligase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-64  215.2   0.0    1.1e-63  214.6   0.0    1.3  1  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
    3.9e-33  114.1   0.0    8.1e-33  113.1   0.0    1.6  1  GARS_N           Phosphoribosylglycinamide synthetase, N doma
    8.6e-26   90.0   0.0    2.5e-25   88.6   0.0    1.8  1  GARS_C           Phosphoribosylglycinamide synthetase, C doma
    1.2e-05   24.9   0.0      2e-05   24.2   0.0    1.3  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    9.4e-05   22.1   0.0    0.00016   21.3   0.0    1.3  1  ATP-grasp_2      ATP-grasp domain
    0.00094   18.8   0.0     0.0022   17.6   0.0    1.6  1  ATP-grasp        ATP-grasp domain
     0.0015   18.2   0.0     0.0032   17.1   0.0    1.5  1  ATP-grasp_4      ATP-grasp domain
     0.0027   17.3   0.0     0.0051   16.4   0.0    1.4  1  RimK             RimK-like ATP-grasp domain
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.023   14.8   0.0    1.5  1  ATP-grasp_3      ATP-grasp domain
      0.052   13.0   0.0       0.09   12.2   0.0    1.4  1  ATP-grasp_5      ATP-grasp domain
      0.078   12.5   0.0       0.14   11.7   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus


Domain annotation for each model (and alignments):
>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.6   0.0   6.6e-67   1.1e-63       1     194 []     101     293 ..     101     293 .. 0.99

  Alignments for each domain:
  == domain 1  score: 214.6 bits;  conditional E-value: 6.6e-67
                 HBHHHHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---SEEEEEEEE CS
      GARS_A   1 asKsfakdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleGeEvsllal 99 
                 +sK+++k+l+ +++iptae + f++p +a ++ ++++++  V+Kadgla+gKgv ++++ ++a + +++++++k fG a +k++iEe+leG+E+sl++l
  CCG92017.1 101 GSKAWTKELMVHYKIPTAEARIFENPIDAIHFSKSFHFPQ-VIKADGLASGKGVLIVHDPTQAENSIRKLMDQKIFGAACKKILIEEFLEGIELSLFVL 198
                 69**************************************.********************************************************** PP

                 ECTTEEEE---BEEEEEEECCCEEEEECECEEEES-TTS-HHHHHHHHHHTHHHHHHHHHCTT---EEEEEEEEEEETTEEEEEEEESS--TTCH CS
      GARS_A 100 vdgktvkplplaqdhkrvlegDkgpnTGGmGayspapvvteellekikeeileptveglkkegipfkGvLyaglmlvedgpkvlefnvRfgDpet 194
                  dg++ + l++ +d+k++++ Dkg+nTGGmGa+ p p++  +l+++i+++i+ p +e+++ke+i +kG+Lyaglm+++ gp+vlefn+R gDpe+
  CCG92017.1 199 LDGRNYRILAAIHDYKKAFDFDKGLNTGGMGAFFPSPIFDASLQSSIEKKIILPLLEAFQKEQIIYKGILYAGLMITRFGPAVLEFNIRLGDPEA 293
                 *********************************************************************************************97 PP

>> GARS_N  Phosphoribosylglycinamide synthetase, N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.0     5e-36   8.1e-33       1      90 []       1     100 [.       1     100 [. 0.95

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 5e-36
                 EEEEEEESSHHHHHHHHHHTTSTTESEEEEEE--CGG...........TTHHHHHHHHHHCTESEEEE-SHHHHHTTHHHHHHHHHT-EEES--CCCCH CS
      GARS_N   1 mkvLvvGsGGRehalawklaqspkvekvyvapgNagt...........edlealvefakeekidlvvvGpeapLvaGvadaleeekgikvfGpskeaAq 88 
                 mkvL+vG+GGRehal+w+++++p+v+k++vapgNagt            d+++l ++a+e++ dl+vvGpe pL++G+ad++e+  g+k++Gp+k+aA+
  CCG92017.1   1 MKVLIVGGGGREHALCWSFKKDPTVKKIFVAPGNAGTeefctnlpigiYDMDNLFHWARENRPDLTVVGPEVPLCDGIADKFESI-GLKIVGPKKRAAR 98 
                 9************************************9888888888877789*****************************655.************* PP

                 HH CS
      GARS_N  89 lE 90 
                 lE
  CCG92017.1  99 LE 100
                 *9 PP

>> GARS_C  Phosphoribosylglycinamide synthetase, C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0   1.5e-28   2.5e-25       2      79 ..     330     422 ..     329     423 .. 0.96

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 1.5e-28
                 EEEEEEETTTTSS--ST-EEBS..........TTEEEEESSEE.....EEE-SSEEEEEEEEESSHHHHHHHHHHHHTTCB-TTEE--STTTH CS
      GARS_C   2 vgvvlaskGYPgsyekgkeitg..........egvkvfhagtk.....lvtsGGRvlavvavgetleeArakayeavkkikfeglfyRkDIGa 79 
                 vgvv+a++GYP+++e gkeit           ++  +fh+gtk     lv+s+GRvl+ v+ +++leeA++ ay+ +++i+feg+fyRkDIG+
  CCG92017.1 330 VGVVVAAQGYPEHFEIGKEITLnekdlteeerKQSLLFHSGTKkidgrLVSSSGRVLCSVGWAQSLEEAKKMAYRRIDTIHFEGMFYRKDIGQ 422
                 89******************8799*******97778********************************************************6 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.2e-08     2e-05       5     101 ..     106     199 ..     102     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.2e-08
                  HHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEE CS
  CPSase_L_D2   5 akealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlr 101
                   ke++ + ++p++++ +   e+  +a++++k++ +P +ika     GkG  ++++  + +++++k +++     + k++l+e++l+g  e+ + vl 
   CCG92017.1 106 TKELMVHYKIPTAEARIF--ENPIDAIHFSKSFHFPQVIKADGLASGKGVLIVHDPTQAENSIRKLMDQKIFGAACKKILIEEFLEGI-ELSLFVLL 199
                  677888888899888888..9999********************************************998667789********986.44455555 PP

>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     1e-07   0.00016       7     114 ..     106     200 ..     104     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1e-07
                  HHHHHHCTT----SEEEESSHHHHHHHHHHHTSSSEEEEE--SSSTCCCTTCEEEESSHHHHHHHHHCCTTSEEE-TTS-TT-EEE--EEEEE---EC CS
  ATP-grasp_2   7 akeilakygvkvpegevaesaeeaeeaakklgekelvvKaQvlaGGRGKagGvklvkskeeakeaakellgkelvtkqtgkeGkkvekvlveealdik 104
                  +ke++ +y ++++e+++ e++ +a +  k++   + v+Ka  la G+    Gv +v+++++a++ +++l+ +++        G  ++k+l+ee l+  
   CCG92017.1 106 TKELMVHYKIPTAEARIFENPIDAIHFSKSFHFPQ-VIKADGLASGK----GVLIVHDPTQAENSIRKLMDQKIF-------GAACKKILIEEFLEG- 190
                  599******************************99.****9999876....7***********************.......**********98763. PP

                  EEEEEEEEEE CS
  ATP-grasp_2 105 kElYlsivlD 114
                   El l ++lD
   CCG92017.1 191 IELSLFVLLD 200
                  3555555555 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.3e-06    0.0022       4      80 ..     113     195 ..     110     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.3e-06
                 TT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEE CS
   ATP-grasp   4 lglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsv 80 
                  ++p+++  + e+  ++ ++ +++ +p v+K + +  +GkG  +v+++ ++e+ ++ l        + +k+++Eef +   Els+
  CCG92017.1 113 YKIPTAEARIFENPIDAIHFSKSFHFPQVIK-ADGLASGKGVLIVHDPTQAENSIRKLmdqkifgaACKKILIEEFLE-GIELSL 195
                 578999999999999999*************.566678**************99999988888888788999999986.455555 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     2e-06    0.0032       2      89 ..     137     214 ..     136     224 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2e-06
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilkkefa 89 
                  ++P viK    ++  GV +++++++ ++ ++++ ++     + +       +++l+Ee++eG E ++ +++d   + ++++i  ++++
   CCG92017.1 137 HFPQVIKADGLASGKGVLIVHDPTQAENSIRKLMDQ-----KIFG---AACKKILIEEFLEGIELSLFVLLDGRNYRILAAI--HDYK 214
                  6899***9999999**********999977777755.....2233...34689******************99988888888..4444 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.1e-06    0.0051       4     122 ..     103     229 ..     101     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.1e-06
                 HHHHHHHHHHTT-----EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH.........GGG--EEEEE--SS-SEEEEEE CS
        RimK   4 KlkslklLakakikvpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlea.........lkeailvqeyieeaenediRvl 93 
                 K+ + +l+++ ki++ ++++ +++ da ++ + +  +fP v+K      G +v++ +++ ++++ +             ++il+ e++e  e   + ++
  CCG92017.1 103 KAWTKELMVHYKIPTAEARIFENPIDAIHFSKSF--HFPQVIKADGLASGKGVLIVHDPTQAENSIRKlmdqkifgaACKKILIEEFLEGIE---LSLF 196
                 66677899999****************9998876..8******************9987766554444322266555666779999997654...4444 PP

                 EE....TTEEEEEEEEE--SSS----TTTT-EE CS
        RimK  94 vv....ddevvaalrrvskeGdFRsnlhrGgva 122
                 v+    +  + aa++   k  dF   l+ Gg++
  CCG92017.1 197 VLldgrNYRILAAIHDYKKAFDFDKGLNTGGMG 229
                 442222447889999998888999999888875 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.4e-05     0.023      30      92 ..     130     210 ..     103     289 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.4e-05
                  -......SSSEEEEESS-------B--SS--TTE...................EEEE---SEEEEEEEEE.SSSEEEEEEE CS
  ATP-grasp_3  30 e......ekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefieGkplSvsllsdgekvlvlavn 92 
                           + v+K    a g++v++v++  +ae++i ++             l+ ef+eG +lS+ +l dg + ++la  
   CCG92017.1 130 IhfsksfHFPQVIKADGLASGKGVLIVHDPTQAENSIRKLMdqkifgaackkiLIEEFLEGIELSLFVLLDGRNYRILAAI 210
                  04444455567888777788888999988888888888877888899999999********************99999865 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.5e-05      0.09      13      54 ..     104     145 ..      94     196 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.5e-05
  ATP-grasp_5  13 aeakelleaygipvvetrlassaeeaveaaeeigypvvlKiv 54 
                  a +kel+  y ip++e r+ +++ +a++  +++++p v+K +
   CCG92017.1 104 AWTKELMVHYKIPTAEARIFENPIDAIHFSKSFHFPQVIKAD 145
                  5689************************************75 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.4e-05      0.14      31     115 ..     132     221 ..     110     261 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.4e-05
                      HHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-......SCEEEEE--ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHH CS
  Dala_Dala_lig_C  31 veeelgypvfVKpareGSSvGvskveseeelkeaieeafkyd......ekvlvEeaiegreievavlgneklevsevgeivvkkgfydyea 115
                        +++ +p ++K+  + S  Gv  v+   + ++ i++ +         +k+l+Ee++eg e+   vl +++ +   + +i   k+ +d+++
       CCG92017.1 132 FSKSFHFPQVIKADGLASGKGVLIVHDPTQAENSIRKLMDQKifgaacKKILIEEFLEGIELSLFVLLDGR-NYRILAAIHDYKKAFDFDK 221
                      567899*******************999999888888775433333338*****************99655.3444455555566667765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2956.70
//
Query:       CCG92018.1  [L=301]
Description: membrane-associated Zn-dependent endopeptidase; self-cleaved [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-42  144.2   0.0    5.9e-42  143.7   0.0    1.2  1  Peptidase_M48  Peptidase family M48
    1.1e-05   24.8   1.1     0.0068   15.6   0.0    2.2  2  Peptidase_M56  BlaR1 peptidase M56
  ------ inclusion threshold ------
      0.029   14.0   0.0      0.048   13.2   0.0    1.2  1  Peptidase_M1   Peptidase family M1 domain
       0.04   13.7   0.0      0.059   13.1   0.0    1.2  1  BSP            Peptidase of plants and bacteria
      0.073   13.2   0.0       0.13   12.4   0.0    1.4  1  P5-ATPase      P5-type ATPase cation transporter
      0.082   12.8   0.2      0.082   12.8   0.2    2.4  2  DUF2062        Uncharacterized protein conserved in bacteria 
      0.094   13.2   0.1      0.094   13.2   0.1    2.9  2  TraL           TraL protein
        0.8    9.6   6.9        1.3    8.9   0.6    3.1  3  CoxIIa         Cytochrome c oxidase subunit IIa family
        7.4    7.1   5.9         55    4.3   1.9    2.9  3  DUF4231        Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   0.0     3e-45   5.9e-42       3     195 ..      81     298 ..      79     299 .. 0.97

  Alignments for each domain:
  == domain 1  score: 143.7 bits;  conditional E-value: 3e-45
                    -SSHHHHHHHHHHHHTT-..-EEEEEEE-GGGT-EEEEESSS-E.EEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHH.HHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Peptidase_M48   3 reaelkevveelakeaglpkpltkvyvvnspkrNAFalgggknk.rivltdgLlkqllseeelaaVlGHElGHikhrhsvvs.livsllasillll 96 
                     e++l e+v+ela++a++  p+++v +++sp++NAFa+g + ++  +++++g+l   ++++++a+VlGHE+ Hi ++++v++ l+++++++++ +l
     CCG92018.1  81 AERWLLETVSELANRANI--PMPEVGIYESPEVNAFATGPSRSNaLVAVSTGIL-AQMNKKQIAGVLGHEITHISNGDMVTMtLLQGVVNTFVVFL 173
                    5799**************..*********************9999*********.99*************************999*********** PP

                    HHHHHTT-SHHHHHTT--S---HHHHHHHHHHTT...........HHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHH..... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
  Peptidase_M48  97 glallisraeedaagafldalavliglliillfl...........alSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrs..... 176
                     +++ +   +++ ++   +++++ +++ ++++++           ++SR rE++AD+ g++l+  ++++++al kl++ +e+++ + ++rs     
     CCG92018.1 174 SRIIGFFIDRLFSRNDERESIGIGFYMGMFISEIvlgllasfivaWYSRMREFRADAGGAHLAG-KEAMLSALKKLKQIMEGESAFVDERSpalna 268
                    *******************************999******************************.********************99999999*** PP

                    ...........HHS-SS--HHHHHHHHHH- CS
                    ...........xxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 177 ...........ellstHPplleRiqalkel 195
                               +ll+tHPpl+eRi+al++l
     CCG92018.1 269 fkingrpggilALLATHPPLEERIKALENL 298
                    ***************************975 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   1.4    0.0017       3.3      10      83 ..      13      87 ..       4     108 .. 0.61
   2 !   15.6   0.0   3.4e-06    0.0068     181     220 ..     125     164 ..     112     173 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0017
  Peptidase_M56 10 aaiavllvlllr.rilrrllsai.aaYalWlivllallipfipesavs..lpvkfetskinsaaskaplasaaskvld 83
                    a++vll l++  + l r+l+a    Y  W++ l++l+++f   s +s  ++  + + + n++  k p+++a +  l+
     CCG92018.1 13 IAVIVLLTLFISiFHLDRWLNAYgIDY--WSLFLFSLVVGFTG-SFISlaISKWMAKMAYNIQVIKQPSNEAERWLLE 87
                   233444444443156778877641566..************76.8888555555666666666667777766655444 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 3.4e-06
  Peptidase_M56 181 IvlPadflkklsdeeleyillHElaHlkrkDllvnllvav 220
                    + +++ +l ++++++++ +l HE +H+ ++D++   l++ 
     CCG92018.1 125 VAVSTGILAQMNKKQIAGVLGHEITHISNGDMVTMTLLQG 164
                    567888999************************9988775 PP

>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.4e-05     0.048      53      87 ..     126     160 ..     119     165 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.4e-05
                   -SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEES CS
  Peptidase_M1  53 lvdpenssesdkrsvaeviaHElaHqWfGnlVtmk 87 
                   +v  +  ++ +k+++a v  HE+ H   G++Vtm 
    CCG92018.1 126 AVSTGILAQMNKKQIAGVLGHEITHISNGDMVTMT 160
                   45556677889**********************96 PP

>> BSP  Peptidase of plants and bacteria
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     3e-05     0.059      21     109 ..      65     151 ..      57     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3e-05
         BSP  21 rlvpdaesvlsdasrkvlklLykspserippvrsVtl....llrdidgvaytsGldddhkeIhlslsyiekasaekdakaevtgvLthelvhv 109
                   +++  +v+++ s++ ++ L +++se   +  ++ +    ++++ ++ a+++G +  +  + +s+  +++++     k++++gvL he++h+
  CCG92018.1  65 AKMAYNIQVIKQPSNEAERWLLETVSEL-ANRANIPMpevgIYESPEVNAFATGPSRSNALVAVSTGILAQMN-----KKQIAGVLGHEITHI 151
                 5567778899999999999999987775.666666667777889999999****99999999******99976.....479***********8 PP

>> P5-ATPase  P5-type ATPase cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.3e-05      0.13      10      64 ..      35      90 ..      31     132 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.3e-05
   P5-ATPase 10 yrtsrwrlalyilgciltlGlllL.lfrWlPewrvkltgkpcpLkeadvvliedef 64
                y   +w l+l++l++ +t+ ++ L + +W+ ++  +++ ++ p +ea+  l+e+  
  CCG92018.1 35 YGIDYWSLFLFSLVVGFTGSFISLaISKWMAKMAYNIQVIKQPSNEAERWLLETVS 90
                77889*****************996789********************99999433 PP

>> DUF2062  Uncharacterized protein conserved in bacteria (DUF2062)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.2      0.44   8.8e+02     116     143 ..      42      65 ..       8      71 .. 0.65
   2 ?   12.8   0.2   4.1e-05     0.082       2      52 ..     175     222 ..     144     230 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.44
     DUF2062 116 lllGslilglilallgYflvlllwrlyr 143
                 l    ++++l+++++g f++l + +++ 
  CCG92018.1  42 L----FLFSLVVGFTGSFISLAISKWMA 65 
                 4....44445555555555555544443 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.1e-05
     DUF2062   2 rllrylllrllrlhlsprsvarGvaiGvfigflPifglqmllaallalllr 52 
                 r+++ ++ rl+  +++++s+  G+++G+fi+ +    l  l+ +++a+  r
  CCG92018.1 175 RIIGFFIDRLFSRNDERESIGIGFYMGMFISEI---VLGLLASFIVAWYSR 222
                 667777778888888888888888888888776...366666666666655 PP

>> TraL  TraL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   1.0      0.22   4.3e+02      15      54 ..      25      67 ..      22      86 .. 0.75
   2 ?   13.2   0.1   4.7e-05     0.094      18      66 ..     188     235 ..     183     242 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.22
        TraL 15 fwelDealvillllvvgillgqfviglv...lglllvlllrkl 54
                ++ lD  l ++++  ++++l ++v+g++   ++l++++++ k+
  CCG92018.1 25 IFHLDRWLNAYGIDYWSLFLFSLVVGFTgsfISLAISKWMAKM 67
                6888888888888888888888888885444555555555554 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.7e-05
        TraL  18 lDealvillllvvgillgqfviglvlglllvlllrklkkgrgdgfllhl 66 
                  De   i +++ +g++++++v+gl l+ ++v +++++++ r+d    hl
  CCG92018.1 188 NDERESIGIGFYMGMFISEIVLGL-LASFIVAWYSRMREFRADAGGAHL 235
                 577778999***************.555666678888887777666665 PP

>> CoxIIa  Cytochrome c oxidase subunit IIa family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.6   0.00067       1.3       8      21 ..      13      26 ..      12      35 .. 0.88
   2 ?    2.8   0.1     0.051     1e+02      24      32 ..     167     175 ..     156     175 .. 0.78
   3 ?   -1.3   0.0      0.98     2e+03       2      11 ..     273     282 ..     272     284 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00067
                HHHHHHHHHHHHHH CS
      CoxIIa  8 LavivvLtatILvF 21
                +aviv+Lt++I +F
  CCG92018.1 13 IAVIVLLTLFISIF 26
                69*********999 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.051
                 HHHHHHHHT CS
      CoxIIa  24 gvFyvFlsR 32 
                  +F vFlsR
  CCG92018.1 167 NTFVVFLSR 175
                 69******9 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.98
                 -STHHHHHHH CS
      CoxIIa   2 erPtGaLavi 11 
                 +rP G La+ 
  CCG92018.1 273 GRPGGILALL 282
                 79***99986 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.9     0.028        55      19      66 ..       7      58 ..       1      70 [. 0.76
   2 ?   -1.3   0.1       1.5     3e+03      58      66 ..     126     134 ..     106     180 .. 0.52
   3 ?    3.5   0.0      0.05        99       7      37 ..     189     227 ..     183     259 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.028
     DUF4231 19 llrlitivlgallpilvs....sklgagvsvlkiltallsalvailaaleef 66
                ll l+ i + +ll++++s    + +     +  ++ +l s++v ++ +++++
  CCG92018.1  7 LLILTNIAVIVLLTLFISifhlDRWLNAYGIDYWSLFLFSLVVGFTGSFISL 58
                4555555555566666666777999999999999999999999999999886 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
     DUF4231  58 ailaaleef 66 
                 a+++++ + 
  CCG92018.1 126 AVSTGILAQ 134
                 333333322 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.05
     DUF4231   7 ekkasrakrrfrllrlitivlgallpilvs........s 37 
                 +++ s+   +++++ + +ivlg l++++v+        +
  CCG92018.1 189 DERESIGIGFYMGMFISEIVLGLLASFIVAwysrmrefR 227
                 5666667778999**************999666554431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2218.22
//
Query:       CCG92019.1  [L=481]
Description: succinate-semialdehyde dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-157  525.0   0.0   1.5e-157  524.8   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.036   13.5   0.0      0.071   12.6   0.0    1.4  1  DUF1487   Protein of unknown function (DUF1487)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  524.8   0.0  1.7e-161  1.5e-157       1     461 [.      21     475 ..      21     476 .. 0.97

  Alignments for each domain:
  == domain 1  score: 524.8 bits;  conditional E-value: 1.7e-161
                 EET-SSSEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH CS
      Aldedh   1 wvesesetievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlry 99 
                 wv++  +++e i+P++g+vi+ +++++++++ +a++a++eaf+ w+++++ +R +iL  +a+l+ e+k++lae+++le+Gkp++e ++ev++a++++ +
  CCG92019.1  21 WVDTL-DSFELISPIDGRVIGLIADCGPKEALQAIDASEEAFELWKATSVDTRYQILSHWARLIVEEKNQLAEIMALEMGKPIKEGKKEVDYAASFVWW 118
                 56554.479****************************************************************************************** PP

                 HHHHHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SS.TCCH CS
      Aldedh 100 yaelaeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgs.gsev 196
                 yae+a++++g ++p   ++k+++v +eP+G v+aItPWNfP++++++k+a a+aaG+t+++KPae++pl+a+ la l+++ag P+gvl+v+++   + +
  CCG92019.1 119 YAEEAKRIYGVTIPApVPSKRIVVLYEPVGPVLAITPWNFPAAMVTRKAASAIAAGCTIIIKPAERSPLTATFLASLWDKAGGPPGVLQVLPTAnPERL 217
                 ***************66**************************************************************************77636779 PP

                 HHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT CS
      Aldedh 197 gealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakk 295
                  + + ++ +++k+sftGs +vg+ i+k+aak+lk v+lElGG++p+iv++daD+d a+++++++ f+naGQ C+a++rl+v+++i + f +klve++kk
  CCG92019.1 218 CKVFFDDFRIRKISFTGSIPVGKAIYKEAAKTLKGVLLELGGNAPMIVFADADIDTAIREAIQAKFRNAGQACVAVNRLYVEKKISEPFCSKLVEETKK 316
                 999************************************************************************************************ PP

                 --BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSS CS
      Aldedh 296 lkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdte 394
                 l +gdp+ ++td+GPl+ e++l+k+++++++  e+g k+l+Gg      +++g +++Pt++   +p++ri++eEiFGPVl+vi f++e e+i++ N+t+
  CCG92019.1 317 LVLGDPFLPSTDIGPLVGEQSLQKIHSLLADVLEKGGKILCGG------ESQGLYFAPTIVWVSDPSARILNEEIFGPVLPVIHFETEREVISWSNATN 409
                 *******************************************......689*********************************************** PP

                 EESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEE CS
      Aldedh 395 yGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevkt 461
                 yGLa++v+t+dl+ra+r++e+l++G v+iNd   +  +a pfgG+k+Sg+Gregg++g++e++e+k 
  CCG92019.1 410 YGLASYVMTSDLKRAFRLSESLRFGIVGINDGRPSCCQA-PFGGIKESGIGREGGQWGIKEFLETKY 475
                 ********************************7777777.*************************95 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.9e-06     0.071       8      60 ..     263     317 ..     259     319 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.9e-06
     DUF1487   8 mvifedgDlnsalealves.lke.Pfaegavatvlveesirdefvervrsklkpl 60 
                 m++f+d+D+++a++  +++ +++   a+ av  + ve++i + f+ ++ ++ k+l
  CCG92019.1 263 MIVFADADIDTAIREAIQAkFRNaGQACVAVNRLYVEKKISEPFCSKLVEETKKL 317
                 9***********988777624441467788889************9988887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3311.41
//
Query:       CCG92020.1  [L=272]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2067.35
//
Query:       CCG92021.1  [L=76]
Description: hypothetical protein MFUM_290024 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 505.54
//
Query:       CCG92022.1  [L=141]
Description: Conserved membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-40  137.8  10.5    2.9e-40  137.6  10.5    1.0  1  DUF420          Protein of unknown function (DUF420)
  ------ inclusion threshold ------
      0.013   15.6   0.4      0.013   15.6   0.4    2.4  2  Fumarate_red_C  Fumarate reductase subunit C
      0.016   15.0   1.7        2.1    8.2   0.2    2.1  2  DUF2976         Protein of unknown function (DUF2976)
      0.017   13.4   5.4      0.019   13.3   5.4    1.0  1  DUF2070         Predicted membrane protein (DUF2070)
       0.33   10.4   2.7        4.2    6.8   2.7    1.9  1  DUF1129         Protein of unknown function (DUF1129)
        1.7    8.9   9.6        2.9    8.1   0.3    2.2  2  RDD             RDD family
        4.4    6.9   9.1        3.2    7.4   1.0    2.1  2  DUF4131         Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF420  Protein of unknown function (DUF420)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6  10.5   1.1e-43   2.9e-40       1     132 []       6     134 ..       6     134 .. 0.98

  Alignments for each domain:
  == domain 1  score: 137.6 bits;  conditional E-value: 1.1e-43
      DUF420   1 lpalnavlnalaavllllglvaikkgkieaHrklmllafvlsalFlvlYllkhalagetkfggpeeegvirpvYlaiLitHivLavvvvplvlvtlvla 99 
                 lpa+na+lnal++++ll+g++ ik+g+ ++H+ +ml+a++ls++Fl +Yl++h+ +g t f  ++   + rpvY+ iL+tH++La+v++p +++++++a
  CCG92022.1   6 LPAINASLNALTFCFLLFGYISIKRGRQDLHKWMMLIAVGLSIAFLTCYLIYHYYHGATPFPRHD---WSRPVYFSILTTHTILAIVNLPAIFFAVYYA 101
                 799***********************************************************555...8****************************** PP

      DUF420 100 lkgkfekHrkiaritvpiwlyvavtGvvvYllL 132
                 l+g+f+kH +i+++ +p w yv++tGv+vY++L
  CCG92022.1 102 LTGQFRKHTRITKLLWPSWAYVSITGVLVYFML 134
                 ********************************8 PP

>> Fumarate_red_C  Fumarate reductase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.4     5e-06     0.013      32      86 ..      13      66 ..       8      71 .. 0.89
   2 ?    0.4   1.2      0.26   6.6e+02      78     119 ..      97     124 ..      69     134 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5e-06
  Fumarate_red_C 32 vlvalfalvlllgllaLaqgeaayeafleflqnPlvlllniiaLaaallhavTwf 86
                    + ++ f+ +ll+g +++++g +  ++++ +++  l++++    L+   +h +T f
      CCG92022.1 13 LNALTFC-FLLFGYISIKRGRQDLHKWMMLIAVGLSIAFLTCYLIYHYYHGATPF 66
                    4455555.7899***************************************9977 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.26
  Fumarate_red_C  78 allhavTwfelaPkavkivvkgeklpeevivkalwaalvvvs 119
                     a++ a T              g+  +++ i+k lw  ++ vs
      CCG92022.1  97 AVYYALT--------------GQFRKHTRITKLLWPSWAYVS 124
                     3333333..............333444555555555555555 PP

>> DUF2976  Protein of unknown function (DUF2976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0029       7.3      51      82 ..      25      56 ..      13      60 .. 0.90
   2 ?    8.2   0.2   0.00082       2.1      28      78 ..      83     134 ..      68     141 .] 0.80

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0029
     DUF2976 51 fneisegkaewgkfgltlvvGvvllvvviwLl 82
                +  i++g++++ k  ++++vG  + +++ +L+
  CCG92022.1 25 YISIKRGRQDLHKWMMLIAVGLSIAFLTCYLI 56
                77789************************997 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00082
     DUF2976  28 villgLvlaavaflaVakaalkkfnei.segkaewgkfgltlvvGvvllvvv 78 
                  ++l++v   + f+aV +a+ ++f+   +  k  w + + + + Gv++ ++ 
  CCG92022.1  83 HTILAIVNLPAIFFAVYYALTGQFRKHtRITKLLWPSWAYVSITGVLVYFML 134
                 678999999999************9886888999999999888887665543 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   5.4   7.6e-06     0.019       8     124 ..       3     136 ..       2     141 .] 0.70

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.6e-06
     DUF2070   8 ifrlPswkvsllliillalligllaflssk.....lfgillfglpalvaflltlpvlrilggr.....ltykrslflalltelivviisllaillsall 96 
                 ++ lP++  sl ++ ++ ll+g++++  +      ++ ++++gl+  +afl  + +  +++g       +++r +++++lt+  +++i+ l+++++a+ 
  CCG92022.1   3 VKDLPAINASLNALTFCFLLFGYISIKRGRqdlhkWMMLIAVGLS--IAFLTCYLIYHYYHGAtpfprHDWSRPVYFSILTTHTILAIVNLPAIFFAVY 99 
                 5679********************9988889*9887777777777..9999999999999999776444455557777777777777777787777665 PP

     DUF2070  97 .........qalvllalvls.........lalvfalrllvlvavsd 124
                                    +         +a v +  +lv++++ +
  CCG92022.1 100 yaltgqfrkH---------TritkllwpsWAYVSITGVLVYFMLYH 136
                 3444444333.........144444444477777777777777665 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   2.7    0.0016       4.2      81     184 ..       8     123 ..       2     140 .. 0.46

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0016
     DUF1129  81 alDnsLlllalfallfgilalfskkkqtas..iGlitl.llvalvgGlamvlvyrlltre.kkkkkrpplwkrllillll.l....vvwlvlftlval. 169
                 a+  sL  l +  llfg +  +++  q  +  + li++ l++a++  ++++ +y+  t+   +  +rp  + +l+  ++l +    +++++++++++  
  CCG92022.1   8 AINASLNALTFCFLLFGYIS-IKRGRQDLHkwMMLIAVgLSIAFLTCYLIYHYYHGATPFpRHDWSRPVYFSILTTHTILaIvnlpAIFFAVYYALTGq 105
                 67777777777777777777.444444444464444443667777777777777777777544445555444433322220200002233333332221 PP

     DUF1129 170 ..lpaviNpvL.pplvli 184
                     + i+  L p+++++
  CCG92022.1 106 frKHTRITKLLwPSWAYV 123
                 122233444442334443 PP

>> RDD  RDD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.3    0.0011       2.9      21      75 ..      16      66 ..       9      68 .. 0.65
   2 ?    4.4   3.7     0.015        39      16      67 ..      84     137 ..      71     141 .] 0.51

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0011
         RDD 21 islllallivallnakasaneavagslllllllvlllvllvyqllllskkgqTlG 75
                +++ + l+++++      ++ ++ + +++l+++ l +++l ++l++ +++g+T++
  CCG92022.1 16 LTFCFLLFGYIS----IKRGRQDLHKWMMLIAVGLSIAFLTCYLIYHYYHGATPF 66
                444455555553....356666666677777777777777888888888888875 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.015
         RDD  16 vllliislllallivall..nakasaneavagslllllllvlll..vllvyqllll 67 
                 ++l+i++l++++++v+       +++  +  + ll+  ++++ +  vl++++l+ +
  CCG92022.1  84 TILAIVNLPAIFFAVYYAltG--QFRKHTRITKLLWPSWAYVSItgVLVYFMLYHW 137
                 688888888888888855532..333333333333333333333113333333333 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.0    0.0013       3.2      11      53 ..      15      58 ..       7      76 .. 0.54
   2 ?    3.8   1.4     0.015        39       9      51 ..      91     135 ..      82     141 .] 0.52

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0013
     DUF4131 11 alllllllllllllrr.rprrrvllllllllllallgfalrapq 53
                al +++ll+ ++  +r r+  + +++l+++ l +++  ++  ++
  CCG92022.1 15 ALTFCFLLFGYISIKRgRQDLHKWMMLIAVGLSIAFLTCYLIYH 58
                33444444444444446666666666666666555554444333 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.015
     DUF4131   9 llalllllllllllllrr..rprrrvllllllllllallgfalra 51 
                 l a++++++ +l  ++r+  r ++  + +++++ ++++l+++  +
  CCG92022.1  91 LPAIFFAVYYALTGQFRKhtRITKLLWPSWAYVSITGVLVYFMLY 135
                 334444444444444433455555556666666666666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 971.79
//
Query:       CCG92023.1  [L=225]
Description: Cu2+-binding oxygen sensor (SCO1/SenC/PrrC family) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-27   95.1   0.0    4.1e-27   94.7   0.0    1.1  1  SCO1-SenC  SCO1/SenC
    3.9e-05   23.4   0.0    0.00011   21.9   0.0    1.7  1  Redoxin    Redoxin
    6.2e-05   22.9   0.0    0.00012   22.0   0.0    1.6  1  AhpC-TSA   AhpC/TSA family


Domain annotation for each model (and alignments):
>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   6.9e-31   4.1e-27       2     133 ..      55     191 ..      54     192 .. 0.93

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 6.9e-31
   SCO1-SenC   2 gpFelvdqdgeavteedlegkpslvffgFthCpdvCpttlanmaevldalgeeaekvqplfiTvDPerDtpevlkeyleafdpriig...ltGskeeia 97 
                  pF++v +dg ++t +dl+gk++++ +++thCp  C t++ +m+++++ lg+  e v++++i++DPe+Dt +vl++y+e ++++ +    +tG+++ei+
  CCG92023.1  55 PPFSFVRSDGVTITANDLKGKIWVADLIYTHCPGPCSTETLRMSQLQSILGKI-EGVRLVSISIDPEEDTGAVLRKYAEGYHADPSFwffVTGKPQEIQ 152
                 59**************************************************9.*****************************9999999********* PP

   SCO1-SenC  98 kaake.frvyvekvedees..dytvdHsssvyLvdpdgr 133
                 +++ +   + + ++++++   +  + Hs++++Lvd+dg 
  CCG92023.1 153 EFVVKgLALGMGENPKDKVqaEGKFFHSTQFVLVDQDGF 191
                 **9886777766666666666899*************96 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.9e-08   0.00011       5     138 ..      53     203 ..      45     211 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.9e-08
                 BB---ECCEETTCEEEEEHHHHTTSEEEEEEESTTT-HH.HHHTHHHHHTH.HHHHHCSTTTEEEEEESSSHHHHHHHHH......TT-TSEE.EE-TT CS
     Redoxin   5 kaPdftlplaatdgnsvslsefkgkkvvvnfvpgafcPt.Csaehpylekl.aellkekgvdvvavvadndafvkefwgk......eglkfpv.lsDgs 94 
                 ++P f++  + +dg +++  ++kgk  v     + +cP  Cs+e++ + +l + l k +gv  v +++d ++   +++ k       +++f + ++   
  CCG92023.1  53 QIPPFSF--VRSDGVTITANDLKGKIWVADLIYT-HCPGpCSTETLRMSQLqSILGKIEGVRLVSISIDPEEDTGAVLRKyaegyhADPSFWFfVTGKP 148
                 5899999..66***********************.99955***********55566779*************966666666668995556665488854 PP

                 SHHHH....HTT-TTEEE.GGG.......EEE-EEEEEEETTEEEEEEESSSCHT CS
     Redoxin  95 aaftk....alGlrleedaseg.......lrtpryavidedgkvvylevepepet 138
                 +++++     l l + e  ++        + +  ++++d+dg +++++ + + +t
  CCG92023.1 149 QEIQEfvvkGLALGMGENPKDKvqaegkfFHSTQFVLVDQDGFIRKYYDGLNQKT 203
                 444432222344447777777788999999***************9998877754 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0     2e-08   0.00012       4      81 ..      53     131 ..      51     204 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2e-08
                 B----EEESTTCEEEECHHHTTSEEEEEEESTST-C.CHHHHHHHHHHCHHHCCC.TTEEEEEEESSSCHHHHHHHHH-H CS
    AhpC-TSA   4 kapdfelknadgetvslsdykgkpvvlffypkdwcp.vCttelpalaklyeefke.rgvevigvsvdspeshkkfiekes 81 
                 ++p f+  + dg t++ +d+kgk+ v   + + +cp +C te  ++++l   + + +gv ++ +s+d++e+  +  +k+ 
  CCG92023.1  53 QIPPFSFVRSDGVTITANDLKGKIWVADLIYT-HCPgPCSTETLRMSQLQSILGKiEGVRLVSISIDPEEDTGAVLRKYA 131
                 7899******************9999999999.88857**********999887526*************8888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1477.40
//
Query:       CCG92024.1  [L=264]
Description: ABC-type multidrug transport system, permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-28   97.1  18.0    9.2e-28   97.1  18.0    2.0  2  ABC2_membrane    ABC-2 type transporter
    2.9e-16   59.5  28.6    3.6e-16   59.2  28.6    1.1  1  ABC2_membrane_3  ABC-2 family transporter protein
    3.1e-05   24.0   4.3    3.1e-05   24.0   4.3    2.6  2  ABC2_membrane_4  ABC-2 family transporter protein
    8.5e-05   22.0  20.8    0.00016   21.1  20.5    1.4  1  ABC2_membrane_2  ABC-2 family transporter protein
     0.0061   16.1  21.1       0.32   10.5  21.0    2.2  1  ABC2_membrane_5  ABC-2 family transporter protein
  ------ inclusion threshold ------
       0.12   12.4  11.2       0.06   13.3   7.8    2.1  2  Cytochrom_B_N_2  Cytochrome b(N-terminal)/b6/petB


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1  18.0   3.1e-31   9.2e-28       3     206 ..      15     220 ..      13     223 .. 0.94
   2 ?    1.7   4.5     0.049   1.5e+02      55     122 ..     235     255 ..     222     261 .. 0.57

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 3.1e-31
  ABC2_membrane   3 ikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnr.....pgllffsvlflafsaltsvapvferergvlerelvsplysl 93 
                    i++l++re+ +++r+++ + +  l +pl++ l++g+  g+  +s+++ n+     pg+l  ++lf+a  ++++++++ +r++g+l+  l +p+ s+
     CCG92024.1  15 IYTLWMREVVRFLRQKNRI-IGALGTPLVFWLLIGSGVGKSFHSSNEPNYllyffPGMLLLILLFTA--IFSTISIIEDRKEGFLQGVLCAPI-SR 106
                    899*************999.*******************8555555555566789************..8888888*****************.** PP

  ABC2_membrane  94 sayvlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpk 187
                    s++v++k+l+   ++llq+l++ +++++l g++ s  r + + ++l+l+++a++++g +++  + s++ +  l++l+l+pl llsG+++p +   +
     CCG92024.1 107 SSIVFSKLLGGTSLGLLQSLLVYFLSLPL-GIPFSmeRLLGVAVTLFLLGMAMTAVGYILAWPLDSVQGYHALMNLFLMPLWLLSGALFPAEGAYG 201
                    ****************************9.****99999*******************************************************55 PP

  ABC2_membrane 188 wlqwiaylnPltyavealr 206
                    w++ +  lnPl+y++e+lr
     CCG92024.1 202 WIKTLIFLNPLYYGLEMLR 220
                    ******************9 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.049
  ABC2_membrane  55 llffsvlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelpvsllqalifllivyfl 122
                    +++f ++f++f+++t++                                               ++++
     CCG92024.1 235 VMYFVITFIFFVLVTAI-----------------------------------------------SIWV 255
                    45566666665555555...............................................4333 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2  28.6   1.2e-19   3.6e-16     153     344 ..      57     250 ..      26     254 .. 0.84

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 1.2e-19
  ABC2_membrane_3 153 eeelsnvasflvgliliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilll..afglgipfg..nlglll 242
                      ++ ++n+  ++++ +l++++++ta+f + si+e+++ + +++ l++++s++++++sk+lg   ++llq+ll+ +l   +g  ipf+   l+ + 
       CCG92024.1  57 SSNEPNYLLYFFPGMLLLILLFTAIFSTISIIEDRKEGFLQGVLCAPISRSSIVFSKLLGGTSLGLLQSLLVYFLslPLG--IPFSmeRLLGVA 148
                      45568888888887777778888888999****************************************99888732566..777775888888 PP

  ABC2_membrane_3 243 llfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapglgllrlitgdplweil..lsliilal 334
                      + ++l g+a++a+gy l    ++     +l+ +++++l++++g+lfp e   +++k++ +++P+++  ++l   ++  p ++++  + +++ ++
       CCG92024.1 149 VTLFLLGMAMTAVGYILAWPLDSVQGYHALMNLFLMPLWLLSGALFPAEGAYGWIKTLIFLNPLYYGLEMLRFWLS--PHSTLAlhTLVMYFVI 240
                      ***********************9999999********************************************96..3344332244444445 PP

  ABC2_membrane_3 335 favvylllal 344
                      ++++++l+++
       CCG92024.1 241 TFIFFVLVTA 250
                      5555554443 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   4.3     1e-08   3.1e-05      11     149 ..      28     159 ..      21     172 .. 0.66
   2 ?   -1.8   7.2      0.84   2.5e+03     101     155 ..     228     251 ..     164     262 .. 0.57

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1e-08
  ABC2_membrane_4  11 rskivwllvlaallvpllallyfnllgktgldpaefyslsvfgftlllllplilgiiasylifrEeqndtlknLltiPvsrtklllaKlivlll 104
                      r+k  +++ l++ lv +++l+ +   ++   +++  y+l+ f+ ++lll+ l ++i+++++i + ++++ l   l+ P+sr +++++Kl+    
       CCG92024.1  28 RQKNRIIGALGTPLV-FWLLIGSGVGKSFHSSNEPNYLLYFFP-GMLLLILLFTAIFSTISIIEDRKEGFLQGVLCAPISRSSIVFSKLLGGTS 119
                      555555555555543.555556554333445556667777777.556677788899**********************************9999 PP

  ABC2_membrane_4 105 lsvllmlvtflitvlfallsgfvgfsvklvlellkkclelgllvf 149
                      l +l +l+ +++++ ++     ++fs++ +l + + +++lg+ ++
       CCG92024.1 120 LGLLQSLLVYFLSLPLG-----IPFSMERLLGVAVTLFLLGMAMT 159
                      99988888655554444.....45555554444333333333332 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.84
  ABC2_membrane_4 101 vllllsvllmlvtflitvlfallsgfvgfsvklvlellkkclelgllvffavlpi 155
                      +l                                l++l+++++++ + f++v++i
       CCG92024.1 228 TL-------------------------------ALHTLVMYFVITFIFFVLVTAI 251
                      33...............................3334444443333333333333 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1  20.5   5.4e-08   0.00016      81     280 ..      71     249 ..      54     256 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 5.4e-08
  ABC2_membrane_2  81 mavlipviaalfgadaiagEkergTlkllLskPvsRdeillgKfigglaiglaiavallatvllalaiilalgivlaledllllvvasvlllll 174
                      m +li ++ a+f+  +i +++ +g l   L  P+sR++i+++K++gg  +   +++  l +     +++l lgi++++e ll ++v   ll++ 
       CCG92024.1  71 MLLLILLFTAIFSTISIIEDRKEGFLQGVLCAPISRSSIVFSKLLGGTSL---GLLQSLLV----YFLSLPLGIPFSMERLLGVAVTLFLLGM- 156
                      66788889***************************************999...55444444....46689*************9999999999. PP

  ABC2_membrane_2 175 vvflalglllSsvarssreaaalalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdlnalgstatnllil 268
                       +++a+g+ l+  +  s++   +   lf++ + l +++l++     a+ a+   +  +l +l+p  +   +l+  l+  +    +++  +l++ 
       CCG92024.1 157 -AMTAVGYILAWPLD-SVQGYHALMNLFLMPLWLLSGALFP-----AEGAY--GWIKTLIFLNPLYYGLEMLRFWLSPHS----TLALHTLVMY 237
                      .77************.8888888889999999999999977.....44444..588999999999999999999999996....5555555555 PP

  ABC2_membrane_2 269 llllavllvlgy 280
                       +++ +++vl++
       CCG92024.1 238 FVITFIFFVLVT 249
                      555556665554 PP

>> ABC2_membrane_5  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5  21.0   0.00011      0.32      35     159 ..      64     208 ..      39     263 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
  ABC2_membrane_5  35 svllifsilslvisiililttls..yDekskwnkylltLPvtrkeiVksKYlfvlililiailitlllliiavlikgnvtisevllsiliglvi 126
                       ++++ ++l l+++++ i++t+s   D+k+++ + +l  P++r+ iV sK l+++ l+l+ +l++++l++    +  ++ ++ +l +++  +++
       CCG92024.1  64 LLYFFPGMLLLILLFTAIFSTISiiEDRKEGFLQGVLCAPISRSSIVFSKLLGGTSLGLLQSLLVYFLSL---PLGIPFSMERLLGVAVTLFLL 154
                      4556666777777777777777766799************************************988885...566678888999999999999 PP

  ABC2_membrane_5 127 aliflaivlPlyfkfgvekgrivliiiifg.....................iif 159
                      +++++a+ + l   +    g  +l+ ++++                     +if
       CCG92024.1 155 GMAMTAVGYILAWPLDSVQGYHALMNLFLMplwllsgalfpaegaygwiktLIF 208
                      999999888888777777776655555554333333333333333222222222 PP

>> Cytochrom_B_N_2  Cytochrome b(N-terminal)/b6/petB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.41   1.2e+03      28      44 ..      67      83 ..      38      95 .. 0.65
   2 ?   13.3   7.8     2e-05      0.06      30     111 ..     147     246 ..     141     260 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.41
  Cytochrom_B_N_2 28 WiiGvllllltllegfl 44
                     +  G+lll+l  ++ f 
       CCG92024.1 67 FFPGMLLLILLFTAIFS 83
                     33344444444444443 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2e-05
  Cytochrom_B_N_2  30 iGvllllltllegflGysLpddllsvtalrvgagiiss.........vPvvg..twlvellfGgelpgeallsrl.......yalHilllpall 105
                      + v+l+ll +++  +Gy+L + l sv++ + ++++            +P  g   w+++l+f ++l+    + r+       +alH l++ +++
       CCG92024.1 147 VAVTLFLLGMAMTAVGYILAWPLDSVQGYHALMNLFLMplwllsgalFPAEGayGWIKTLIFLNPLYYGLEMLRFwlsphstLALHTLVMYFVI 240
                      5799*****************************999988999999*9888876689*********99999888884344334467776666666 PP

  Cytochrom_B_N_2 106 laliva 111
                        ++++
       CCG92024.1 241 TFIFFV 246
                      555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 1874.74
//
Query:       CCG92025.1  [L=339]
Description: ABC-type multidrug transport system, ATPase component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-30  106.3   0.0    3.2e-30  105.4   0.0    1.5  1  ABC_tran     ABC transporter
    4.5e-11   43.1   5.3    3.6e-05   23.7   0.6    2.3  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00021   20.8   0.0    0.00053   19.5   0.0    1.7  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00054   20.5   1.9     0.0014   19.1   1.8    1.9  2  AAA_23       AAA domain
     0.0015   18.4   0.0       0.16   11.7   0.0    2.2  2  AAA_15       AAA ATPase domain
     0.0041   16.8   0.3     0.0097   15.6   0.3    1.6  1  AAA_29       P-loop containing region of AAA domain
     0.0042   17.4   1.4      0.085   13.1   0.3    2.8  3  AAA_22       AAA domain
  ------ inclusion threshold ------
      0.034   14.8   0.0      0.097   13.4   0.0    1.8  1  DUF4162      Domain of unknown function (DUF4162)
      0.035   14.5   0.0       0.24   11.8   0.0    2.3  1  AAA          ATPase family associated with various cellular a
      0.066   13.8   0.1       0.16   12.5   0.1    1.9  1  AAA_18       AAA domain
       0.08   12.9   0.0       0.34   10.9   0.0    2.0  2  AAA_5        AAA domain (dynein-related subfamily)
      0.081   12.8   0.0       0.19   11.6   0.0    1.6  1  RsgA_GTPase  RsgA GTPase
       0.12   12.3   0.0       0.37   10.7   0.0    1.8  1  NTPase_1     NTPase
       0.13   12.0   0.1       0.28   10.9   0.1    1.5  1  ATP_bind_1   Conserved hypothetical ATP binding protein
       0.15   10.7   0.0       0.19   10.3   0.0    1.2  1  AAA_13       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   2.7e-33   3.2e-30       1     136 [.      38     181 ..      38     182 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 2.7e-33
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 l+nvs++++eg + +i+G+nG+GK+tL+++l+ ll   +G++++ g +  e e  s+r+ +g+++q p+l+++ltv+en             e +++i+
  CCG92025.1  38 LNNVSFEVSEGMIAGILGPNGSGKTTLFRILSTLLPLSSGTVNISGFSYPE-ESASARAIMGIVFQSPSLDKKLTVEENllhqghlynlhgkELRNRID 135
                 79****************************************999988888.999************************************999999** PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++l+ + l+e k++ v    ++LSgG ++rv++a+ +l +p++l+lDEp+
  CCG92025.1 136 ELLKLFHLSERKKDLV----ETLSGGLQRRVEVAKGILHRPEVLILDEPS 181
                 ***************9....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.6   3.1e-08   3.6e-05       1      33 [.      50      79 ..      50      99 .. 0.74
   2 !   21.4   0.4   1.5e-07   0.00018     233     297 ..     150     212 ..     105     214 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.1e-08
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdveglt 33
                ++++ GpNgsGK++L+++l+ l    + + g+ 
  CCG92025.1 50 IAGILGPNGSGKTTLFRILSTLL---PLSSGTV 79
                6789***************9994...3333333 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 1.5e-07
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ellkelsrngaQviltTH 297
                  +  lS G +r   ++  +l ++    +l++DEp +g++P++ r ++  l+ + ++ +  +++tTH
  CCG92025.1 150 LVETLSGGLQRRVEVAKGILHRP---EVLILDEPSTGIDPAARRDIWnYLFTLRKELNLTILVTTH 212
                 45555666666666666777777...9********************666655555579******* PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.5e-07   0.00053      19     208 ..      42     223 ..      22     231 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.5e-07
                 EEETTSSE.EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTE CS
                 xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  19 ilpfsksf.taivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingk 116
                 + ++s+++   i+GpNGSGK+ l+  ++ +L  +s       ++s   +   e++++ +a + i+f+ ++ +     ++++++ ++ ++g+  y + gk
  CCG92025.1  42 SFEVSEGMiAGILGPNGSGKTTLFRILSTLLPLSSG----TVNISGFSY--PEESASARAIMGIVFQSPSLD-----KKLTVEENLLHQGH-LYNLHGK 128
                 55555554156**************99999997666....455555555..4788889999*****999887.....89*********999.9****** PP

                 EE-HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SC CS
                 xxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
       SMC_N 117 evtkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadk 207
                 e ++  + ell+  ++s+       +LSgG +  v +a        ++  + +lDe    +D + ++ + ++l + +k+    ++v+++  +  e++dk
  CCG92025.1 129 ELRN-RIDELLKLFHLSERkkdlveTLSGGLQRRVEVAKG----ILHRPEVLILDEPSTGIDPAARRDIWNYLFTLRKElnLTILVTTHLMDEAERCDK 222
                 9986.566666666665544556669****8877766643....3444456799*******************99888732455666665555555554 PP

                 E CS
                 x RF
       SMC_N 208 l 208
                 +
  CCG92025.1 223 V 223
                 4 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   1.8   1.2e-06    0.0014      11      43 ..      39      72 ..      22     148 .. 0.86
   2 ?   -1.2   0.1       2.1   2.5e+03     149     174 ..     128     153 ..      86     168 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.2e-06
      AAA_23 11 rdqeidFskg.ltlItGpNGaGKTTildAiklaL 43
                ++++++ s g +  I GpNG+GKTT+++ +   L
  CCG92025.1 39 NNVSFEVSEGmIAGILGPNGSGKTTLFRILSTLL 72
                45556666662558*************9887655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.1
      AAA_23 149 kdkkerleelekeleeledekkllek 174
                 k+  +r++el k +   e +k+l+e+
  CCG92025.1 128 KELRNRIDELLKLFHLSERKKDLVET 153
                 34445555555555555555555555 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00013      0.16      26      87 ..      51     107 ..      36     156 .. 0.55
   2 ?    4.6   0.0     0.019        23     320     364 ..     168     212 ..     157     213 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
      AAA_15  26 tvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdvefaek..e 87 
                   + G+N+sGK+++ ++l  +l  +    + +++i   ++ +   +s s +    + f+++  +
  CCG92025.1  51 AGILGPNGSGKTTLFRILSTLLPLS----SGTVNISGFSYPE---ESASARAIMGIVFQSPslD 107
                 4588****************99988....3344443333333...3555555555555333432 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.019
      AAA_15 320 keeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 +  ++ +l+++EP + + p a + ++++l  l ++ +  +++tTH
  CCG92025.1 168 ILHRPEVLILDEPSTGIDPAARRDIWNYLFTLRKELNLTILVTTH 212
                 55678899************************************* PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   8.1e-06    0.0097      15      46 ..      41      72 ..      36      83 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.1e-06
      AAA_29 15 htieidlkg.atlltGpsGsGKSTllDAiqalL 46
                 ++e++ +g +  + Gp+GsGK+Tl+  +++lL
  CCG92025.1 41 VSFEVS-EGmIAGILGPNGSGKTTLFRILSTLL 72
                556666.455888************96666655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.3   7.1e-05     0.085       9     112 ..      52     196 ..      45     213 .. 0.60
   2 ?    4.3   0.0     0.038        45      36      98 ..     165     227 ..     150     244 .. 0.71
   3 ?   -2.5   0.0       4.8   5.8e+03      46      67 ..     280     301 ..     271     322 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.1e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee..........................erpevvfvtlpsstsskdllrellralglelka........... 70 
                  + G+ G+GKTtl r l   l+  +   +                           ++ +v                          +           
  CCG92025.1  52 GILGPNGSGKTTLFRILSTLLPLSSGTVNisgfsypeesasaraimgivfqspslDKKLTV--------------------------Eenllhqghlyn 124
                 589*****************98644444466677777665555555555555555333333..........................032233333322 PP

      AAA_22  71 ..................erlsseellealeqalrarav........ielliiDEaqh.lr...seealeeL 112
                                      ++++l+e+l   l++r          +e+li+DE    ++   + +++++L
  CCG92025.1 125 lhgkelrnridellklfhLSERKKDLVETLSGGLQRRVEvakgilhrPEVLILDEPSTgIDpaaRRDIWNYL 196
                 333333344443333444446777777777777777777777789989999999966655554446666666 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.038
      AAA_22  36 ee...erpevvfvtlpsst....sskdllrellralglelkaerlsseell.ealeqalraravielliiD 98 
                 ++   +rpev+  + ps +     ++d+++ l+   +      +l++  l+ ++l + ++++++  +li+D
  CCG92025.1 165 AKgilHRPEVLILDEPSTGidpaARRDIWNYLFTLRK------ELNLTILVtTHLMDEAERCDK--VLILD 227
                 3345588999999999998755444444444433333......488999999999999999999..99999 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4.8
      AAA_22  46 tlpsstsskdllrellralgle 67 
                 + ++++s+++ll+  +  l++ 
  CCG92025.1 280 ESKKDESPQTLLQFAADLLERH 301
                 4444445555555444444433 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.1e-05     0.097      38      80 ..     275     322 ..     239     323 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.1e-05
                 S-EEEEE-----------------E.....EEEEEEE---HHHHHHHH CS
     DUF4162  38 gelelkledeeaanellkaltsgve.....irsFeeeePsLndIFiek 80 
                 g ++++ +++e++++ll+ +++ +e     i+ ++  + sL+d+F+++
  CCG92025.1 275 GAIVVESKKDESPQTLLQFAADLLErhqsyITAMTIAKTSLEDVFLHL 322
                 557777788999999998764444444455***************987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0002      0.24       4      38 ..      54     142 ..      52     224 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
                 ESSTTSSHHHHHHHHHHHH..THE............................................EEEEETTTCSSS........S CS
         AAA   4 yGppGtGKTllakavakel..gve............................................fleisgsellsk........y 38 
                  Gp G GKT+l + + + l  ++                                             ++++ g+el++         +
  CCG92025.1  54 LGPNGSGKTTLFRILSTLLplSSGtvnisgfsypeesasaraimgivfqspsldkkltveenllhqghLYNLHGKELRNRidellklfH 142
                 7***************9974433311222233333333333444444444444444444444444444444444444443666666662 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00014      0.16       3      24 ..      53      74 ..      52     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
      AAA_18  3 ltGtpGvGKttlakeLskrlgf 24
                + G+ G+GKttl + Ls +l +
  CCG92025.1 53 ILGPNGSGKTTLFRILSTLLPL 74
                89**************988744 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00028      0.34       4      34 ..      53      83 ..      52     103 .. 0.85
   2 ?   -1.8   0.0       2.4   2.9e+03      65      73 ..     171     179 ..     136     225 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00028
                EE--SSSSHHHHHHHGGGGBS--EEEEE--T CS
       AAA_5  4 LvGppGtgKselaerlaaalnreveyvqltr 34
                ++Gp G+gK++l + l+ +l  +  +v+++ 
  CCG92025.1 53 ILGPNGSGKTTLFRILSTLLPLSSGTVNISG 83
                58******************88888887765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.4
                 G-SEEEEES CS
       AAA_5  65 egeilvlDE 73 
                 ++e+l+lDE
  CCG92025.1 171 RPEVLILDE 179
                 566666665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00016      0.19      65     123 ..      13      72 ..       3      83 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00016
                  HHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  65 leelkeelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpel 123
                   +e  ++ ++l+++ l+ s  ++ +l++++ ++++  ++ ++G+ G GK+tL   l   l
   CCG92025.1  13 RTEKIKQRTKLEVKNLTFSYGERLALNNVSFEVSEgMIAGILGPNGSGKTTLFRILSTLL 72 
                  3455667789999*****************9999978889************99887654 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00031      0.37       4      38 ..      53      89 ..      51     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00031
                EE--TTSSHHHHHHHHHHHH.....GGGEEEEEEEEE CS
    NTPase_1  4 iTGppGvGKtTlvkkvlell..kssgvkvgGfyteev 38
                i Gp G+GKtTl++ ++ ll  +s  v+++Gf  +e 
  CCG92025.1 53 ILGPNGSGKTTLFRILSTLLplSSGTVNISGFSYPEE 89
                669*********9988887622566899****98885 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00024      0.28       1      31 [.      53      80 ..      53      83 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00024
  ATP_bind_1  1 vvGpaGsGKttfvgalseilelrgrsvavvN 31
                ++Gp GsGKtt+ + ls +l+l+   + +vN
  CCG92025.1 53 ILGPNGSGKTTLFRILSTLLPLS---SGTVN 80
                68*****************9998...55565 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00016      0.19      21      39 ..      53      71 ..      49     154 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
      AAA_13 21 iYGwNGaGKTtLSrllrsl 39
                i G NG+GKTtL r+l+ l
  CCG92025.1 53 ILGPNGSGKTTLFRILSTL 71
                77**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 2438.14
//
Query:       CCG92026.1  [L=470]
Description: 3-deoxy-D-manno-octulosonic-acid transferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-54  182.4   0.0    1.1e-53  181.5   0.0    1.5  1  Glycos_transf_N  3-Deoxy-D-manno-octulosonic-acid transferase
    3.3e-06   26.7   0.1    4.8e-05   23.0   0.1    2.5  2  Glycos_transf_1  Glycosyl transferases group 1
    0.00021   21.6   0.0    0.00041   20.7   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1
  ------ inclusion threshold ------
       0.24   11.8   0.0       0.44   11.0   0.0    1.3  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> Glycos_transf_N  3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.5   0.0   2.5e-57   1.1e-53       3     177 ..      52     231 ..      50     232 .. 0.95

  Alignments for each domain:
  == domain 1  score: 181.5 bits;  conditional E-value: 2.5e-57
  Glycos_transf_N   3 lkerlglak.....kekekliwiHaaSvGEveaalpLiealrerkpelkillTttTptGaevakkllaervdhvylPlDlpaavrrfldavkPd 91 
                      +++rlgl++     +e+   +wiH++SvGEv   + ++++l + +p++k+ ++ttT+tG+++a +  +e+  ++y+PlD+p+avrr +  ++P+
       CCG92026.1  52 IDQRLGLYPkrelsNEQGVDLWIHGVSVGEVMIGKVILKELWKIDPKIKVAFSTTTATGFRLALSEPKEKCFVFYFPLDFPWAVRRTFSYLHPK 145
                      789*****976543222244***********************************************9999999******************** PP

  Glycos_transf_N  92 llilvetElWpnllaaakkrgipvilvnArlserslrryrrfkallrsllskfdlilaqseedaerlralgapeervevtgnlKfd 177
                      l++l+etE+Wpn+la+a++r+ipv+l+nArlser+ r+y+ f+++++++l+k++lil+ ++ + er+ ++g+p+er+  +g++Kfd
       CCG92026.1 146 LVVLIETEIWPNFLAEASERKIPVLLCNARLSERTERWYKVFSWFMKPYLNKLSLILVTDDSEIERFVKVGFPPERIFRLGSMKFD 231
                      *************************************************************************************9 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.57   2.5e+03     101     124 ..     151     174 ..     141     185 .. 0.78
   2 !   23.0   0.1   1.1e-08   4.8e-05      81     170 ..     333     425 ..     254     427 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.57
                      SSBSS-HHHHHHHHTT--EEEETT CS
  Glycos_transf_1 101 isEgfGivllEAmaaglpviasna 124
                      ++E ++  l EA + ++pv+  na
       CCG92026.1 151 ETEIWPNFLAEASERKIPVLLCNA 174
                      568888889999999999998875 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 1.1e-08
                      CHSSSHHHHHHCESEEEE.EESSBSS-HHHHHHHHTT--EEEET.TTTHCHHCHTTT.SEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHH CS
  Glycos_transf_1  81 vsredleellknadifvl.psisEgfGivllEAmaaglpviasn.aggpaevvkdge.tGllvkpnnaealaeairklledeelrerlgenar 170
                       s  +l +l+++ad++++ +s +   G + +EA +ag+++i+   ++ ++ +++  + + ++v   n e+++ ++++l+ +e++r+ lge+a+
       CCG92026.1 333 DSTGELRSLYEKADLVFVgKSLTAKGGQNFIEAAKAGKAIIVGPnMQNFKLLLNLFVdQRAIVVVQNKEEFSYHLKSLIAEEKTRKLLGERAK 425
                      44789*******99776626777********************978888888888878778888889***********************998 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   9.2e-08   0.00041      15      82 ..     362     433 ..     349     443 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 9.2e-08
  Glyco_trans_1_2  15 lfEaaacGafaltdda....egleelftpgkevilfedleelaekiryllanpeerraiaeaarervlaeht 82 
                      + Eaa +G  +++ +     + l +lf +++ ++++++ ee+ ++++ l+a+++ r+ ++e+a+  +l+++ 
       CCG92026.1 362 FIEAAKAGKAIIVGPNmqnfKLLLNLFVDQRAIVVVQNKEEFSYHLKSLIAEEKTRKLLGERAKSLFLQNLG 433
                      6799999999999977899999999****************************************9999975 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.9e-05      0.44      56     154 ..     128     222 ..     107     226 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.9e-05
  Glyco_trans_4_4  56 dlaalralrrllrqrrerpdvvhahspt..aglaarlarrrrgiplvvtlhglllrrgsgavrrlyralerrllrradavlvvseaeaeelral 147
                       l++++a+rr++     +p +v++ +     +++a  a+  r+ip+++    l  +r  ++ + ++ ++ +  l+   ++lv+ ++e e+++  
       CCG92026.1 128 PLDFPWAVRRTF--SYLHPKLVVLIETEiwPNFLA-EAS-ERKIPVLLCNARL-SERTERW-YKVFSWFMKPYLNKLSLILVTDDSEIERFVKV 215
                      47899******9..888888888776541133333.355.78***98866554.4444566.67789*************************** PP

  Glyco_trans_4_4 148 gvpadrv 154
                      g+p++r+
       CCG92026.1 216 GFPPERI 222
                      ******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3488.60
//
Query:       CCG92027.1  [L=315]
Description: Site-specific recombinase XerD [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-36  124.9   0.0    4.2e-36  124.3   0.0    1.4  1  Phage_integrase  Phage integrase family
    2.2e-12   47.1   2.5    6.6e-12   45.6   0.9    2.4  2  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
    4.3e-09   36.7   2.1    8.4e-09   35.8   2.1    1.4  1  Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
  ------ inclusion threshold ------
      0.018   14.0   0.0      0.029   13.3   0.0    1.3  1  DUF3435          Protein of unknown function (DUF3435)
       0.15   12.5   5.9       0.44   10.9   2.5    3.0  2  Phage_int_SAM_5  Phage integrase SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   1.2e-39   4.2e-36      20     171 ..     155     300 ..     120     301 .. 0.89

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 1.2e-39
                      HHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTSBSSBETTSSB--HHHHHH CS
  Phage_integrase  20 kirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaeksellfaskrgkplsrqtvrk 113
                        rd++ le+ly+ G+R++El++L+ k++ +  + +l+   +gK++ker   ++e a+ ++ ++l+++     +s++lf+s rgkpl+ + ++ 
       CCG92027.1 155 WKRDQAWLETLYGGGIRVGELCALKKKNF-FPAELALL--VKGKRKKERFCIIGEVATAAICDYLNVC---PYESDFLFVSSRGKPLTPRFFQL 242
                      4689999**********************.66666666..6***************************...999******************** PP

                      HHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCCH CS
  Phage_integrase 114 afkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthvak 171
                      a+k++   ag+++ ++pH+lRh+fat+Lle g+dlr +q+llGHs++sttqiYt v++
       CCG92027.1 243 ALKEYLMIAGLDQSISPHKLRHTFATHLLEGGADLRSIQELLGHSHLSTTQIYTSVSA 300
                      ******************************************************9875 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.9   1.9e-15   6.6e-12       1      82 [.      18      96 ..      18      98 .. 0.95
   2 ?   -0.2   0.0      0.34   1.2e+03      25      46 ..     276     296 ..     255     312 .. 0.62

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 1.9e-15
                     HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS-----.-----HHHHHHHHHHHHHHHHH CS
  Phage_int_SAM_1  1 leqfleyLikerglspnTlraYrrdLrrflkflaergkesleqlttedvraflaeleeeg.lsatslarrlsalrsFfqflvr 82
                     l+ f  yL+ e+++s  Tlr+Y ++L +f+ + +    +s+++++ e++r++l  l ++  l+ +s+++r++alrsFf+f ++
       CCG92027.1 18 LKKFILYLS-EKNFSSYTLRNYGQALTEFFSWGKW---QSCREIGKEECRSYLYFLSKKPdLKNSSIRLRFAALRSFFKFYYQ 96
                     578999999.**********************999...******************99989******************9875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.34
                      HHHHHHHHHHH.TS--TTT--H CS
  Phage_int_SAM_1  25 dLrrflkflaergkesleqltt 46 
                      dLr++++ l +    s +q+ t
       CCG92027.1 276 DLRSIQELLGH-SHLSTTQIYT 296
                      67777777777.3333344433 PP

>> Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   2.1   2.3e-12   8.4e-09       2      80 ..      18      96 ..      18     100 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2.3e-12
  Phage_int_SAM_4  2 lerfrealrlaglserTiksYlsaikrflrflkkkapeeltkedieaYlnyLanerklsastqknalnalsffykkvle 80
                     l++f+ +l  +++s  T ++Y +a+++f  + k ++++e++ke+ ++Yl  L +++ l+ s+++  ++al++f+k + +
       CCG92027.1 18 LKKFILYLSEKNFSSYTLRNYGQALTEFFSWGKWQSCREIGKEECRSYLYFLSKKPDLKNSSIRLRFAALRSFFKFYYQ 96
                     689999***************************9****************************************98765 PP

>> DUF3435  Protein of unknown function (DUF3435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.2e-06     0.029     169     239 ..     231     299 ..     222     315 .] 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.2e-06
     DUF3435 169 kdealtastlnsrlkrlgeiagfeepitpYklRrgaakalneSgevseaqrnlilqHassrtFlkhYlsqk 239
                 + ++lt++ ++ +lk+   iag+++ i+p+klR   a +l e g +   + + +l+H+  +t  + Y s+ 
  CCG92027.1 231 RGKPLTPRFFQLALKEYLMIAGLDQSISPHKLRHTFATHLLE-GGADLRSIQELLGHSHLSTT-QIYTSVS 299
                 6799*********************************99999.67777777788999888876.5565555 PP

>> Phage_int_SAM_5  Phage integrase SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.5   0.00012      0.44      12      81 ..      24      92 ..      16     107 .. 0.83
   2 ?   -0.8   0.1      0.56     2e+03       7      25 ..     135     153 ..     129     155 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                     HHHTTS.-HHHHHHHHHHHHHTTTS-..S---TTT--HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHH CS
  Phage_int_SAM_5 12 kkkkkg.skgtlrnykstlkhlkkFlkkkditfeeidkefleeFedYLkkkkglsentiskyfkklkavln 81
                       ++k+ s  tlrny ++l+ +  +   k  + +ei ke ++++ ++L+kk  l++++i+  f  l+ +++
       CCG92027.1 24 YLSEKNfSSYTLRNYGQALTEFFSWG--KWQSCREIGKEECRSYLYFLSKKPDLKNSSIRLRFAALRSFFK 92
                     44444447788999999999998888..779999**************9899***************9987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.56
                      HHHTHHHHTTS-HHHHHHH CS
  Phage_int_SAM_5   7 keyiekkkkkgskgtlrny 25 
                      ++  ek+k+kg+k++++ +
       CCG92027.1 135 RQKWEKEKEKGTKSKWKEW 153
                      5666777777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2495.64
//
Query:       CCG92028.1  [L=71]
Description: hypothetical protein MFUM_290032 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 541.74
//
Query:       CCG92029.1  [L=927]
Description: Phosphoenolpyruvate carboxylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-264  880.0   0.0   1.8e-264  879.7   0.0    1.1  1  PEPcase   Phosphoenolpyruvate carboxylase


Domain annotation for each model (and alignments):
>> PEPcase  Phosphoenolpyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  879.7   0.0  9.9e-269  1.8e-264       2     795 .]     147     927 .]     146     927 .] 0.97

  Alignments for each domain:
  == domain 1  score: 879.7 bits;  conditional E-value: 9.9e-269
                 --EEEEE---TT--SSS--HHHHHHHHHHHHHHT-SS--HHHHHHHHHHHHHHHHHHHH---B-SS---HHHHHHHHHHHHHHTHHHHHHHHHHHHHHH CS
     PEPcase   2 leielVlTAHPteivRrtilkkqrriaelleqldeaelteeereeleeqleeeiallwrtdelrqekptvldEvenglsyfeevlfeavPellreleea 100
                 +ei lV+TAHPtei+R+til+k  +i++ll++   + +     +++e+++e+ ia+lw t++ r+++p+vldEv++gl+yfe++l++++Pel++e+++ 
  CCG92029.1 147 MEIVLVFTAHPTEIKRQTILNKLCEISSLLKKAFGNVK---LPQSIETEIERLIASLWLTERSRSKNPQVLDEVRTGLWYFEHTLWDVIPELHNEFKRV 242
                 89*****************************9877544...447899**************************************************** PP

                 HHHHTS.----T---EEEEE-TTTB-TT-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---....----HHHHHTT-SSS..............T CS
     PEPcase 101 lkesfpelelpaasflrfgsWiGgDRDGNpnVtaevtrevlllqrelalekylkeveeLieeLslslelvevseellesleedkekleevyeelaeryk 199
                 l+ ++p ++l+  ++++fgsWiGgDRDGN++Vt+ +t  +l+lqr+lal+k+ +++ +L e +s+s++ +  s+++l +lee+ +  ++ +ee+ e y 
  CCG92029.1 243 LHIYYPGVSLKP-RWISFGSWIGGDRDGNFQVTTVTTAATLILQRNLALKKIAQSLLQLSEIFSVSSQHIAPSKNVLGLLEEKLKVYPSLKEEY-ESYP 339
                 ******999988.9***************************************************************************99998.8899 PP

                 TSHHHHHHHHHHHHHHHHHHHHHHHHHT-.-----TT---SHHHHHHHHHHHHHHHHHTT-HHHHTTHHHHHHHHHHHTTTTSSEEEEEEEHHHHHHHH CS
     PEPcase 200 eepYRlklaelrkrLentrerleelaekeeeeleeeeayesaeelledLelikesLketgaklladgeledlirqvevfGlhLaklDiRqeserheeal 298
                 +epYRl l +l+k +e + ++++e++  +   +e+     + + + + Le+i+e++k+ +++++ +ge+++l +++evfGlh+++lDiRq+s++h+ea+
  CCG92029.1 340 NEPYRLLLLALKKEVEMAIDTITEKDLLD-FFTEPLPRCFTLNTINTVLEAIEENFKASNTRIFLEGEFQKLKQRIEVFGLHIFSLDIRQHSSMHQEAI 437
                 ************************99999.678999999999********************************************************* PP

                 HHHHHHTTS..--GGGS-HHHHHHHHHHHHH-SS--S-T.T----HHHHHHHHHHHHHHHS.-...TTSEEEEEEET--SHHHHHHHHHHHHHTT-..- CS
     PEPcase 299 aeileylgl.ekdYaelseeervelLlreLeskrplipk.elelseeteevldvlrviaelqeefgkeiietyviSmaeeasdvLevllLakeaglldk 395
                 +eil+  +   k+Y++l+eee+velL++  +++ p +p+ + ++se+ +e+l  + v+++  + +gke++++y+iSm++ +sd+Levl+L+  + +   
  CCG92029.1 438 EEILQLNSNgIKSYTTLKEEEKVELLNSLFQKPFPSLPSlYSHASERLKEILGPILVFSRSIRILGKEACGCYLISMTSGLSDILEVLYLCEICDC--- 533
                 ****9988888***********************9666526799************************************************9999... PP

                 ....S---EEEEE-SHHHHHHHHHHHHHHHHSHHHHHHTTT...EEEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEE-SSTGGGS- CS
     PEPcase 396 aegaaelrvvPLfEtvedLknapevleellslplyrelvkksgelqevMlGYSDSnKdaGfltsnWelykaqealvkvaeeagvklrlFHGrGGsvgRG 494
                       ++++PLfEt++dLk+ap++le+ll +plyr++++k++++q vMlGYSDSnKd+G++tsnW ly+ qe+l++v++++gv+l lFHGrGG+++RG
  CCG92029.1 534 -----FIDIAPLFETLSDLKSAPKILEDLLCHPLYRNYLQKRHNKQIVMLGYSDSNKDCGYMTSNWWLYHIQEKLHEVCQSHGVDLILFHGRGGTIARG 627
                 .....589******************************************************************************************* PP

                 HHHHHHHHHTS-TTTTTT-EEEEE-GGGHHHHHSSHHHHHHHHHHHHHHHHHHHHS------..HHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHH CS
     PEPcase 495 GgpayeailaqPpgtvngrikiTeQGEviaskyslpelalrnLelvtaavleaslleeaeekk.eeweeimeelsevsreaYrklvyeepdfveyFrea 592
                 Ggpa++ailaqP+g ++g+i+iTeQGEv++++y++ ++a+r Le+++ +vl a  ++++ + + ++w++i+e+++e s+ aY +lv++e df+++++e+
  CCG92029.1 628 GGPAAKAILAQPKGLLDGKIRITEQGEVLSTRYHDFDIAFRILEQTAYGVLLAIYKSRKRSIIrKSWKNIIESIAENSYVAYTQLVQNEVDFLRFWQEV 726
                 *****************************************************988777766569********************************** PP

                 S-HHHHHHSS-SSS---------GGSS-HHHHHHHHHHTT--GGGTTTHHHHHHHH..HTTTTHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHH CS
     PEPcase 593 TPieeiskLnigSRPakRkkkkglesLRAIPWvFsWtqsRlllpaWyGvgtalkevlekeeeklelLremykkwpffrtliskvemvlaKadleiakeY 691
                 TPi+ei++L+i+SRP  R ++k++e+LRAIPWvFsW+q+R+++p+WyG+g++lk ++e+++e+l++Lr+my+kwpff+t+i+++++ laK+d++iak Y
  CCG92029.1 727 TPINEIGSLKIASRPIFRFQSKSFEDLRAIPWVFSWMQTRFVIPGWYGIGSSLKIAIESSPESLSILRQMYDKWPFFQTVIDNAQLSLAKTDIDIAKLY 825
                 *************************************************************************************************** PP

                 HHHHS-GG.GHHHHHHHHHHHHHHHHHHHHHHT-SSTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..TT----HHHHHHHHHHHHHHHHH CS
     PEPcase 692 vqllvdkelrerlfeeireelertvelvleitgqkelldknpvlqrsvelRnayidPlnllQvelLkrlRqaeeekseeeeeellrdallltinGiaaG 790
                  +l+++++l +++f+ i++e+++tve++l+it+q+++ld++p+lqrs++lRn+y+dPln++Qve+++r+R+ +   ++ +e +++r+++ ltinGi+aG
  CCG92029.1 826 CSLATNRSLSDKIFAIIESEYKQTVETILKITNQNSILDHEPILQRSIRLRNPYVDPLNYIQVEMIRRNRSGSI--TDPNEIDKIRSVIELTINGISAG 922
                 ***********************************************************************998..6899999**************** PP

                 H---- CS
     PEPcase 791 lrntG 795
                 lrntG
  CCG92029.1 923 LRNTG 927
                 ****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       887  (0.0494729); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.48
# Mc/sec: 5790.97
//
Query:       CCG92030.1  [L=70]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        1.4    9.4   3.4        1.9    8.9   3.4    1.1  1  FeoB_associated  FeoB-associated Cys-rich membrane protein


Domain annotation for each model (and alignments):
>> FeoB_associated  FeoB-associated Cys-rich membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.4   0.00011       1.9       4      18 ..      32      46 ..      27      50 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00011
  FeoB_associated  4 IVgliiaaavafvir 18
                     IV++ii+++v+fvi+
       CCG92030.1 32 IVLAIIIGYVLFVIF 46
                     9************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 532.40
//
Query:       CCG92031.1  [L=504]
Description: 2-isopropylmalate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-98  327.2   0.2    1.2e-97  326.7   0.2    1.3  1  HMGL-like   HMGL-like
    2.1e-30  105.3   0.8    3.9e-30  104.5   0.8    1.4  1  LeuA_dimer  LeuA allosteric (dimerisation) domain


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.7   0.2  1.3e-101   1.2e-97       2     264 .]       6     276 ..       5     276 .. 0.99

  Alignments for each domain:
  == domain 1  score: 326.7 bits;  conditional E-value: 1.3e-101
                 -EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B..--EE-SSHHHHHHHHH....TT.-SEEEEEEES CS
   HMGL-like   2 vkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkarilalvrarekdikaavealkgag.akrvhvfiat 99 
                 ++i+dttLRDGeq+++a++++ +kl++ak+L+++gvd+iE+gfp+ s++d ++vr+ia++vk ++i++l r+  kdi+aa++al++ag a+r+hvf+at
  CCG92031.1   6 LIIFDTTLRDGEQCPGASMTARQKLEVAKQLARLGVDVIEAGFPVISQGDYQSVREIASQVKGPKICGLSRCLPKDIEAAASALEPAGsAARIHVFLAT 104
                 78*************************************************************************************95689******* PP

                 -HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-ETTT-BTTTBS--HHHHHHHHHHHHHHT-SEEEEEETTS---HHHHHHHHHHHHHHS-...GGGEEE CS
   HMGL-like 100 selhlkaklkkdreevakkaeeavkaarslgkdvelsledasrtdleflaevveaaeeaGatriniaDtvGvltPneaaelisalkervk..dkvilsv 196
                 s++h+++kl kd ee++++a++ v++a+s+ +dve+s+edasrt++efla+++++++eaGat++ni+DtvG++ P+e+a li++l e+v+  +k+i+sv
  CCG92031.1 105 SQIHRRYKLAKDEEEIIQIAVNGVRLAKSFVEDVEFSAEDASRTEPEFLARILQQVIEAGATTVNIPDTVGYAVPEEFASLIRYLFENVPniHKAIVSV 203
                 *************************************************************************************************** PP

                 EEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT.....-B----HHHHHHHHHHH CS
   HMGL-like 197 HcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealg.....vdtgldlqklrsiaalv 264
                 HcHndlGlAv n+laA++aGa++v+gt+nG+GeraGna+lee+++a+++++     ++ g++l+++ ++++lv
  CCG92031.1 204 HCHNDLGLAVSNSLAAIKAGARQVEGTINGIGERAGNASLEEIIMAIHTRPdffgkMELGIQLKEILRTSRLV 276
                 **********************************************************************997 PP

>> LeuA_dimer  LeuA allosteric (dimerisation) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.8   4.3e-34   3.9e-30       2     133 .]     373     503 ..     372     503 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 4.3e-34
                 XXXXXXXXXXXXXXXXXX--EEEEEEEEEEETTCEEEEEEEEEE.TTEEEEEEEE-SSHHHHHHHHHHHHHHHT-EEEEEEEE--TT-TT--EEEEEEE CS
  LeuA_dimer   2 vtdedlealvkdelleaeerlkleklqvssgedelstatvklevkdgeekeasaeGnGpvdAllnAlrkalgvdikLldYsvhaitegtdaqaevrVel 100
                 ++d+dl alv+ ++ + +e ++le ++v   +++ ++at+kl+  ++e  + +++G+G+vdA+++A+++++g + +L +Y+v+++teg+da +ev+V++
  CCG92031.1 373 IYDDDLIALVEGQISRIKETYQLEYMAVADCSGGIPMATIKLRR-GQELLVDASTGDGAVDAAMKAVDRITGLHGHLVEYEVRSVTEGKDAIGEVTVKV 470
                 789*****************************************.9999************************************************** PP

                 E--GGGEEEEEEEESSHHHHHHHHHHHHHHHHS CS
  LeuA_dimer 101 evddgkkvsgvGvdsdiveASlkAlisalnrll 133
                 ++d ++ v+g ++++d+ eAS++A+++a+n++l
  CCG92031.1 471 NFDSKHLVTGKAASTDVFEASIRAYLNAVNKAL 503
                 *999999***********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:01.27
# Mc/sec: 1201.64
//
Query:       CCG92032.1  [L=342]
Description: acetohydroxy acid isomeroreductase and 2-dehydropantoate 2-reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-68  229.5   0.0    2.6e-68  228.8   0.0    1.4  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
    5.7e-63  211.5   0.2    7.4e-63  211.1   0.2    1.1  1  IlvC            Acetohydroxy acid isomeroreductase, catalytic
    1.3e-10   41.7   0.0    3.1e-10   40.5   0.0    1.7  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    2.6e-08   33.4   0.0    4.7e-08   32.6   0.0    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    1.6e-05   25.1   0.0      6e-05   23.3   0.0    1.8  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
     0.0019   18.3   0.0      0.004   17.2   0.0    1.5  1  AdoHcyase_NAD   S-adenosyl-L-homocysteine hydrolase, NAD bind
     0.0031   16.5   0.0     0.0056   15.7   0.0    1.4  1  PDH             Prephenate dehydrogenase
  ------ inclusion threshold ------
       0.01   15.5   0.2      0.037   13.7   0.2    2.0  1  ApbA            Ketopantoate reductase PanE/ApbA
      0.011   15.5   0.0      0.022   14.6   0.0    1.4  1  Rossmann-like   Rossmann-like domain
      0.027   14.6   0.0      0.079   13.0   0.0    1.7  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
      0.071   13.1   0.3        7.7    6.5   0.2    3.0  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
      0.084   13.6   0.1       0.27   11.9   0.1    1.9  1  CoA_binding     CoA binding domain


Domain annotation for each model (and alignments):
>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.8   0.0   1.8e-71   2.6e-68       2     165 .]      16     179 ..      15     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 228.8 bits;  conditional E-value: 1.8e-71
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT-EEEESSSHHHH CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliPDelqkevyeeeiepnlkegkalafahGfnih 100
                 lk k+i viG+GsqGha+alnlrdsg++v++gl+ +sks++ Ak++g+evlt +e+vk+adv+++ +PD +  e+y ++i pnl+ gk+l fahGf ih
  CCG92032.1  16 LKTKTIGVIGFGSQGHAHALNLRDSGMNVIIGLHPQSKSIDIAKKHGLEVLTNSEVVKRADVIFLATPDLVIPEIYADQILPNLTPGKILGFAHGFVIH 114
                 899************************************************************************************************ PP

                 TTSS---TTSEEEEEEESS-SHHHHHHHHTT----EEEEEEE-SSS-HHHHHHHHHHHTTHHHH- CS
        IlvN 101 fglikppkdvdvvlvAPkgpGhlvreeyeegkGvpaliaveqdasgkakelalayakgiGatraG 165
                 ++l++pp +vdv+lvAPkgpGhlvr+e+ +g+Gvpalia +qd sgka+++ala+akgiG+tr G
  CCG92032.1 115 YKLVVPPPEVDVILVAPKGPGHLVRREFIQGRGVPALIAAYQDRSGKARDIALAWAKGIGSTRVG 179
                 ***************************************************************98 PP

>> IlvC  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.1   0.2     5e-66   7.4e-63       1     144 []     185     328 ..     185     328 .. 1.00

  Alignments for each domain:
  == domain 1  score: 211.1 bits;  conditional E-value: 5e-66
                 HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT--HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHS-HHHHHHHHHHHHHH CS
        IlvC   1 FkeEtetDlfgEqavLcGgvselveagFetlveaGyspelAyfeclhelklivdliyegGiakmresiSdtaeygdltagprviteevkeemkeileei 99 
                 FkeEtetDlfgEqavLcGg+++l++agFetlv+ Gy pe+Ayfec+he+klivdliye Gi++mr siS+ta++gd ++gp+vi+e+vke+m+++le+i
  CCG92032.1 185 FKEETETDLFGEQAVLCGGLTSLITAGFETLVNSGYAPEMAYFECVHEMKLIVDLIYESGISGMRFSISETAKWGDVSVGPKVIDEHVKENMRKVLENI 283
                 9************************************************************************************************** PP

                 HTTHHHHHHHHHHHTTSHHHHHHHHHHHTSHHHHHHHHHHHCHTT CS
        IlvC 100 qsGefakevieenkagrpelkklrkeeaeheiekvgkklralmpw 144
                 q+G+fake+iee k+g++++kkl ++ aeh+iekvg+++ral+pw
  CCG92032.1 284 QNGTFAKEWIEEVKSGKQRYKKLLAQGAEHQIEKVGAEIRALFPW 328
                 ******************************************998 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   2.1e-13   3.1e-10       1      90 [.      20     104 ..      20     105 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 2.1e-13
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHC.GHHHHTTSE CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlsel.akdalkgkl 90 
                    +ig+iG+G++g+a a++l  +g    +++++ +++ +++  +a++ g +v +  n+e++++adv++la +  +++e+ ++   +++  gk+
     CCG92032.1  20 TIGVIGFGSQGHAHALNLRDSG---MNVIIGLHPQSKSI-DIAKKHGLEVLT--NSEVVKRADVIFLATPDLVIPEIYADQiLPNLTPGKI 104
                    69********************...****9977766666.777887867777..****************999999865432777777776 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   3.1e-11   4.7e-08      32     100 ..      14      83 ..       4      86 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 3.1e-11
                   S-GTTSEEEEES-SHHHHHHHHHHHHTT-EEE.EESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S- CS
  2-Hacid_dh_C  32 kelsgktvGiiGlGrIGqavakrlkafgmkvi.aydrskkkeeeeeelgvelvsleellaesDivslhlp 100
                   + l+ kt+G+iG+G+ G+a a  l+  gm+vi +  ++ k+ + ++++g+e+ +  e+++++D+++l++p
    CCG92032.1  14 SLLKTKTIGVIGFGSQGHAHALNLRDSGMNVIiGLHPQSKSIDIAKKHGLEVLTNSEVVKRADVIFLATP 83 
                   56899************************8752688888888899999*******************998 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     4e-08     6e-05       1      86 [.      20     105 ..      20     106 .. 0.89
   2 ?   -1.3   0.0       1.5   2.2e+03      67      85 ..     270     288 ..     254     320 .. 0.62

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4e-08
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EE CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdeviegllealkkgdil 86 
                    +ig+iG G  G+  alnl ++g++v++  + ++k  ++++++   + + +e+v+++dv+++  ++    +   +++l++l +g+il
     CCG92032.1  20 TIGVIGFGSQGHAHALNLRDSGMNVIIGLHPQSKSIDIAKKHGLEVLTNSEVVKRADVIFLATPDLVIPEIYADQILPNLTPGKIL 105
                    69***********************99988888888888887667777789*************99888888888********986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
                    HHHHHHHHSHCCC--TT-E CS
  NAD_binding_2  67 kavdeviegllealkkgdi 85 
                    ++v+e ++++le++++g++
     CCG92032.1 270 EHVKENMRKVLENIQNGTF 288
                    4555555555555555543 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.7e-06     0.004      19      86 ..      14      82 ..       4      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.7e-06
                   S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHH.HHCTT-EE--HHHCTTT-SEEEE-S CS
  AdoHcyase_NAD 19 vllaGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalq.aameGfevvtleevvkkadivvttt 86
                    ll  k++ v+G+G  G   a  l+  G  vi+       ++  a  +G+ev t  evvk+ad++  +t
     CCG92032.1 14 SLLKTKTIGVIGFGSQGHAHALNLRDSGMNVIIGLHPQSKSIDiAKKHGLEVLTNSEVVKRADVIFLAT 82
                   57899**************************99865556677636789***************998877 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.8e-06    0.0056       2      61 ..      34      90 ..      33     105 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.8e-06
                HHHHHHTT--SEEEEE-SSHHHHHHHHHTTSSSEEES-GGGGCCGSEEEE-S-GGGHHHH CS
         PDH  2 aralrrkgfkvtvigydideekaeaalelglvdeatddieavkeadivvlavPvevilev 61
                a+ lr +g+   +ig   + ++++ a++ gl+   +   e vk ad+++la+P  vi e+
  CCG92032.1 34 ALNLRDSGM-NVIIGLHPQSKSIDIAKKHGLEVLTNS--EVVKRADVIFLATPDLVIPEI 90
                889*****5.56789999999999999****988877..7*************7776655 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   2.5e-05     0.037       1      50 [.      21      71 ..      21     110 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.5e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH..HHHHHHHHCEEEEETTCEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr..rlealkknGlrltseggee 50
                i ++G+G++G   a +L   g +v++ l+ +   ++  kk+Gl++ +++ e+
  CCG92032.1 21 IGVIGFGSQGHAHALNLRDSGMNVIIGLHPQskSIDIAKKHGLEVLTNS-EV 71
                78***************99******999999734445899999998888.22 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.5e-05     0.022      12      87 ..      20      93 ..      14     112 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.5e-05
  Rossmann-like 12 svGiisaGrvGtalgaaleraghv.vvgisaisaasreraerrlPdvpvlevedvaaraellllavPdaelpglvkg 87
                   ++G+i+ G  G a +  l  +g   ++g+   s+ s + a+    + +vl+  +v++ra+++ la Pd  +p++ ++
     CCG92032.1 20 TIGVIGFGSQGHAHALNLRDSGMNvIIGLHPQSK-SIDIAK--KHGLEVLTNSEVVKRADVIFLATPDLVIPEIYAD 93
                   589*********9999998887650455555554.444554..56999*********************99998765 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.3e-05     0.079       9      83 ..      15      82 ..       9      88 .. 0.87
   2 ?   -3.4   0.0       6.2   9.3e+03      75      93 ..     123     141 ..     122     144 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.3e-05
                  ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-S CS
  Shikimate_DH  9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisat 83
                   lk+k++ +iG G  ++  a +L ++g++ v++    +++  ++a++++ e   +l+    +e++++adv++ at
    CCG92032.1 15 LLKTKTIGVIGFGSQGHAHALNLRDSGMN-VIIGLHPQSKSIDIAKKHGLE---VLT---NSEVVKRADVIFLAT 82
                  5899************************9.9999999***********655...433...356789******999 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.2
                   T-SEEEE-SSSSS-SB-HH CS
  Shikimate_DH  75 eadvvisataseepileke 93 
                   e+dv+++a + + +++++e
    CCG92032.1 123 EVDVILVAPKGPGHLVRRE 141
                   789***9999999999887 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2    0.0052       7.7       2      42 ..      21      61 ..      20     110 .. 0.74
   2 ?   -0.4   0.0      0.66   9.9e+02      94     131 ..     161     201 ..     149     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0052
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHS CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvreeelieeineeh 42
                    i+v+G Gs G a A  l + g +v +  + +    +i ++h
      CCG92032.1 21 IGVIGFGSQGHAHALNLRDSGMNVIIGLHPQSKSIDIAKKH 61
                    78899999999999999999888877666555555555544 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.66
                     -TT-EEEE---SEET.TTEEHHHHHHHHH-S--...EEEEE CS
  NAD_Gly3P_dh_N  94 kkkailvsliKGieegtlkllsevieeelkeek...vavls 131
                     k++ i++  +KGi   ++ ++++  +ee++++     avl 
      CCG92032.1 161 KARDIALAWAKGIGSTRVGVIETTFKEETETDLfgeQAVLC 201
                     5677888999***9999999999999999887655555665 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00018      0.27       2      71 ..      17      83 ..      16      95 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
                 TTEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEET...TEEEESCHHHHHHHCTTTEEEEES- CS
  CoA_binding  2 kdtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevl...glpvyksvdeleektevdvavitvP 71
                 k++ ++viG+g +g+a +++ ++    g+++++g  p+  + ++    gl+v  + +e++++  +dv  +++P
   CCG92032.1 17 KTKTIGVIGFGSQGHAHALNLRDS---GMNVIIGLHPQSKSIDIAkkhGLEVL-TNSEVVKR--ADVIFLATP 83
                 577899999999988777776665...99*********5554444777*****.99999999..776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2255.83
//
Query:       CCG92033.1  [L=157]
Description: acetolactate synthase isozyme III, small subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-30  102.8   0.7    6.6e-29   99.9   0.2    2.2  2  ALS_ss_C        Small subunit of acetolactate synthase
    1.3e-16   60.1   0.4    7.1e-16   57.8   0.1    2.1  2  ACT_5           ACT domain
    7.8e-16   57.6   0.4    1.4e-15   56.8   0.1    1.6  2  ACT             ACT domain
    7.3e-06   26.5   1.5    8.3e-06   26.3   0.4    1.7  2  ACT_4           ACT domain
  ------ inclusion threshold ------
      0.015   15.7   0.1      0.033   14.6   0.1    1.6  2  Saccharop_dh_N  LOR/SDH bifunctional enzyme conserved region
      0.031   14.6   0.3        9.1    6.7   0.0    2.2  2  YbbR            YbbR-like protein
      0.036   13.9   0.1        1.9    8.4   0.0    2.7  3  NIL             NIL domain
      0.077   13.3   0.0      0.098   12.9   0.0    1.1  1  THOC7           Tho complex subunit 7
        0.1   12.6   0.3        7.4    6.6   0.1    2.4  2  ACT_6           ACT domain
       0.12   12.9   0.0        0.2   12.3   0.0    1.4  1  Mga             Mga helix-turn-helix domain


Domain annotation for each model (and alignments):
>> ALS_ss_C  Small subunit of acetolactate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.34   6.1e+02      36      57 ..      45      66 ..      36      74 .. 0.58
   2 !   99.9   0.2   3.7e-32   6.6e-29       1      73 [.      84     156 ..      84     156 .. 0.99

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.34
                EEEEEEEE-HHHHHHHHHHS-G CS
    ALS_ss_C 36 sliieltgteekidaliellkp 57
                 ++i + g+ + +d++ + l++
  CCG92033.1 45 RMTIVVKGDDQVLDQVTKQLNK 66
                4555555555555555555543 PP

  == domain 2  score: 99.9 bits;  conditional E-value: 3.7e-32
                 EEEEEEEEE.-SCHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHS-GGGEEEEEEEEEEEEES CS
    ALS_ss_C   1 RElaLiKVkaekeerseileiaeifrakivdvspdsliieltgteekidaliellkpfgilevvRtGrvAleR 73 
                 REl+L+KV++++++r+e+++i++ifrakivdv+p+ ++ie+tg+e+ki ++i l+++fgil+++RtG++Al R
  CCG92033.1  84 RELVLVKVATSNKSRAELMQICDIFRAKIVDVEPKNMTIEVTGDESKISKFIFLMQDFGILDLSRTGKIALPR 156
                 9**********************************************************************88 PP

>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.1     4e-19   7.1e-16       4      62 .]      14      73 ..      11      73 .. 0.96
   2 ?    0.2   0.0      0.39   6.9e+02      33      42 ..     117     126 ..      99     132 .. 0.53

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 4e-19
       ACT_5  4 gvLeRvlrvvrrrgFevkslnmsttedggtvrieltVes.ersvelLsnQleKLidVlkV 62
                gvL R+  +++ rg+++++ln+ +t+d++ +r++++V++ +  ++++++Ql+KLidVl V
  CCG92033.1 14 GVLTRIAELFSGRGYNIDTLNVGPTHDESVSRMTIVVKGdDQVLDQVTKQLNKLIDVLAV 73
                9********************************************************987 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.39
       ACT_5  33 tvrieltVes 42 
                 + +++++V++
  CCG92033.1 117 PKNMTIEVTG 126
                 3334444443 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.1   7.7e-19   1.4e-15       1      66 [.       3      68 ..       3      69 .. 0.98
   2 ?   -3.5   0.0       5.2   9.3e+03      31      42 ..     122     133 ..     120     140 .. 0.52

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 7.7e-19
                EEEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT  1 tvlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkle 66
                ++l+++v++r G+L r++ +++ rg+Nid +++++++d+ ++++++v+++d+++l++v ++l+kl+
  CCG92033.1  3 HTLSILVANRFGVLTRIAELFSGRGYNIDTLNVGPTHDESVSRMTIVVKGDDQVLDQVTKQLNKLI 68
                789*************************************************************97 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.2
                 EEEEEESTTECE CS
         ACT  31 ieqrssedkvag 42 
                 ie++ +e k+ +
  CCG92033.1 122 IEVTGDESKISK 133
                 555555554333 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.4   4.6e-09   8.3e-06       8      79 ..       4      74 ..       1      74 [. 0.86
   2 ?   -1.9   0.0       2.9   5.2e+03      22      35 ..     100     113 ..      87     127 .. 0.53

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4.6e-09
       ACT_4  8 rleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdveh.LsrviakLraipgVisVe 79
                +l++ + +r g+L++i++++s  + ni  +n+  ++++     ++t+ Vk  ++ L++v ++L+++ +V  V+
  CCG92033.1  4 TLSILVANRFGVLTRIAELFSGRGYNIDTLNVGPTHDE--SVSRMTIVVKGDDQvLDQVTKQLNKLIDVLAVQ 74
                799*******************************9855..5567777777555549*************9996 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.9
       ACT_4  22 ditqviseekaniv 35 
                 +++q++   +a+iv
  CCG92033.1 100 ELMQICDIFRAKIV 113
                 33444333344444 PP

>> Saccharop_dh_N  LOR/SDH bifunctional enzyme conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   1.8e-05     0.033      27      71 ..      25      69 ..      13      99 .. 0.73
   2 ?   -1.3   0.0       1.7     3e+03      51      64 ..      93     106 ..      72     133 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-05
                    TXEEEEEEEEXXSSTT.SXEEEEEEEEESSHHHHHHHHHHHHHHHH CS
  Saccharop_dh_N 27 ggsfevlefevGkkkk.dtSyaelevsaedeevLeeileeltelga 71
                    g  +++ +++vG +++ + S  ++ v+++d +vL+++ ++l++l +
      CCG92033.1 25 GRGYNIDTLNVGPTHDeSVSRMTIVVKGDD-QVLDQVTKQLNKLID 69
                    5569********876514566666777766.89******9999844 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.7
                     EEESSHHHHHHHHH CS
  Saccharop_dh_N  51 vsaedeevLeeile 64 
                      s +++++L +i +
      CCG92033.1  93 TSNKSRAELMQICD 106
                     44444555555544 PP

>> YbbR  YbbR-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.3    0.0085        15      22      51 ..      42      70 ..      38      96 .. 0.82
   2 ?    6.7   0.0    0.0051       9.1      18      39 ..     112     133 ..     109     148 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0085
                -.-EEEEEEEE-HHHHHHHTTS----EEE- CS
        YbbR 22 tpepvtVtvtGpesvldkieevkaevyvDl 51
                +++  t+ v+G+ +vld+++++  ++ +D+
  CCG92033.1 42 SVSRMTIVVKGDDQVLDQVTKQLNKL-IDV 70
                677789*************9987777.776 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0051
                 EEE--.-EEEEEEEE-HHHHHH CS
        YbbR  18 vvsgtpepvtVtvtGpesvldk 39 
                 +v++ p+  t++vtG+es ++k
  CCG92033.1 112 IVDVEPKNMTIEVTGDESKISK 133
                 789999999********87765 PP

>> NIL  NIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0     0.001       1.9      34      66 ..      34      66 ..      15      71 .. 0.90
   2 ?   -1.5   0.0       1.3   2.3e+03      53      72 ..      97     116 ..      88     117 .. 0.77
   3 ?    2.4   0.0     0.077   1.4e+02      46      62 ..     120     136 ..     119     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.001
                EEEEETTEEEEEEEEEEES-HHHHHHHHHHHHH CS
         NIL 34 sveriqgtpfGqlvielsgsqesiaaalqylrk 66
                +v+  +++ + +++i ++g+++ ++++ + l+k
  CCG92033.1 34 NVGPTHDESVSRMTIVVKGDDQVLDQVTKQLNK 66
                6788899********************999987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
                 -HHHHHHHHHHHHHTT-EEE CS
         NIL  53 sqesiaaalqylrkrnvdvE 72 
                 s++++ ++ + +r + vdvE
  CCG92033.1  97 SRAELMQICDIFRAKIVDVE 116
                 66788889999999999998 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.077
                 EEEEEES-HHHHHHHHH CS
         NIL  46 lvielsgsqesiaaalq 62 
                 ++ie++g++ +i + + 
  CCG92033.1 120 MTIEVTGDESKISKFIF 136
                 99**********99875 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.5e-05     0.098       6      81 ..      44     123 ..      41     133 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.5e-05
       THOC7   6 sRLlnv...eerplkrltkrllklltsla.esteeeleqlkedllldfaafelsierlqllakanerereryeaekeeie 81 
                 sR+++v   +++ l ++tk+l+kl+++la ++  + +  ++e +l+++a+ + s + l+ +++  + ++  +e ++++ie
  CCG92033.1  44 SRMTIVvkgDDQVLDQVTKQLNKLIDVLAvQDFRDGEYIDRELVLVKVATSNKSRAELMQICDIFRAKIVDVEPKNMTIE 123
                 799999999******************99978888999999999999999999999999999999999999998888887 PP

>> ACT_6  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0041       7.4      10      66 ..      10      68 ..       5      74 .. 0.82
   2 ?    3.9   0.0     0.029        52      17      34 ..      99     116 ..      86     128 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0041
       ACT_6 10 pdrpGltasLtsvlaefgvnilDieqavihgrls..LgllvsgpedalarlekaLlfla 66
                ++r G++ +++++ +  g ni ++++   h++ +   +++v+g+++ l ++ k+L +l 
  CCG92033.1 10 ANRFGVLTRIAELFSGRGYNIDTLNVGPTHDESVsrMTIVVKGDDQVLDQVTKQLNKLI 68
                6899************************9999983356677777889999999998875 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.029
       ACT_6  17 asLtsvlaefgvnilDie 34 
                 a+L++++  f+++i+D+e
  CCG92033.1  99 AELMQICDIFRAKIVDVE 116
                 79**************97 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011       0.2      23      85 ..      69     137 ..      54     139 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
                 HHHHHHSEEEHHHHHHHCT.--HHHHHHHHHHHHHHCHCCT-EE.....ETTCCEEES-HHHHHHHHHH CS
         Mga  23 kflfeeeevsieelaqely.iSestlkrkikelnklLkefdlel.....tkknlklrGdEeqiRyfyae 85 
                 + l  +++ + e + +el+ +  +t +++ +el +    f  ++     ++++++++GdE++i  f+++
  CCG92033.1  69 DVLAVQDFRDGEYIDRELVlVKVATSNKSRAELMQICDIFRAKIvdvepKNMTIEVTGDESKISKFIFL 137
                 5555666666677766665246788899999999999999999999999999**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1179.34
//
Query:       CCG92034.1  [L=91]
Description: Acylphosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-21   76.2   0.0    2.1e-21   76.1   0.0    1.0  1  Acylphosphatase  Acylphosphatase
  ------ inclusion threshold ------
      0.043   13.9   0.0      0.062   13.4   0.0    1.1  1  DUF1115          Protein of unknown function (DUF1115)


Domain annotation for each model (and alignments):
>> Acylphosphatase  Acylphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0   2.4e-25   2.1e-21       2      85 .]       6      89 ..       5      89 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 2.4e-25
  Acylphosphatase  2 rllvtGrVQgvgFRkfvrrlAkelglkGyvrNlsdgsVeivaegeeekvekfleelksgppkarvdeveveeleeeeefkdFei 85
                     +++ +G VQgvgFR++++r+A++  l G vrNl+dg+Ve+ +egee+++++f++el+++  ++ ++ +++ + e e++++ F i
       CCG92034.1  6 KAYFSGFVQGVGFRATAKRIAQRYALGGLVRNLKDGRVELIVEGEEQAIKEFIRELTHSYLQSYISHMDFLWGEPEGKYNHFYI 89
                     67899**************************************************************************99976 PP

>> DUF1115  Protein of unknown function (DUF1115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.9e-06     0.062      18      57 ..      23      63 ..      18      65 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.9e-06
     DUF1115 18 dknAkqlsltGvvllg.pkfnlvvveGgekaikkYkklmlr 57
                ++ A+ ++l G+v    +    ++veG+e+aik++ + +++
  CCG92034.1 23 KRIAQRYALGGLVRNLkDGRVELIVEGEEQAIKEFIRELTH 63
                67899******6655543346689***********999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 711.31
//
Query:       CCG92035.1  [L=58]
Description: hypothetical protein MFUM_290039 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 475.88
//
Query:       CCG92036.1  [L=374]
Description: Beta-glucosidase-related glycosidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-52  178.8   0.0    2.2e-52  178.4   0.0    1.0  1  Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.4   0.0   1.2e-56   2.2e-52      12     298 ..      20     304 ..      11     323 .. 0.91

  Alignments for each domain:
  == domain 1  score: 178.4 bits;  conditional E-value: 1.2e-56
                    -B-SE-S--HHHHHHHHHH--SEEE--GGGTSSHHHHHHHHHHHHHH-SS....S--EEEE---BTTB---SSS.---S-HHHHHHHT-HHHHHHH CS
  Glyco_hydro_3  12 vevseekkseeaaellkkyqvGgiilfaenledtkqleelieaarqaseksrlgiPlllavDqegGlvqrlgeg.tlfPsalalaatssldlikel 106
                    v   ++k  +e+ e +++ q +g i f++nle+++  ++l++ +r   ++       +l++DqegG+v+r++      Psa  l+++ +  l+ + 
     CCG92036.1  20 VGLPGTKLTQEQIETIRDVQPAGFIFFSRNLENPVGFRNLVDTLRSLLNH-----EPILTIDQEGGRVSRFKVFgSEPPSAKDLGEKGDIALLWAH 110
                    55556889999**********************************99998.....34689************9989999***************** PP

                    HHHHHHHHHHHT--EE---B----..-STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHTT-EEEEEEETTGTT-SSETTTSEEB----HHHHHHTT CS
  Glyco_hydro_3 107 griiakelralgididfaPvvdvn..rdprngigvrsFsedpelvaalaaamvkGlqgagvaatvKHFpghGdgavdshkelptvdhseeelrevd 200
                    g+ ++k lr  g++ ++aPv+d +  ++ +n+   r+F +dp+ v  +a+a+++G++++g++ ++KHFpg+   + d h+elp+v ++++el++ +
     CCG92036.1 111 GELTGKLLRLFGLNYNLAPVLDFEttEQEHNSLKGRTFASDPHSVCSFAKAFIEGMHSQGILCCGKHFPGYSFAQCDPHLELPQVFKTKKELEASE 206
                    **********************8611456778**************************************************************** PP

                    HHHHHHHHHTT-SEEEE---B-TTT---..BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SGHHH CS
  Glyco_hydro_3 201 lvpfqaaieagvdsVMtaHvqfpaldgt..patgskklltdvLRkelGFdGvvvsDalamkeiadrggkeeavvlaLkAGvDilLvpeertseika 294
                     +pf+++ ++  ds M aH+   +ld++  pa++s   ++dvLRke+++  + vsD++ m++i+ +++ ++  +l+LkAGvDilL+++     i +
     CCG92036.1 207 WLPFKNL-QNLCDSFMIAHIRNLNLDPEglPASLSFRTIQDVLRKEWNYTKLLVSDDIDMGAIIHHYSLKNTLELSLKAGVDILLLCHRFP-LIRE 300
                    ****975.9*****************9999*********************************************************9884.4444 PP

                    HHHH CS
  Glyco_hydro_3 295 lkka 298
                     ++ 
     CCG92036.1 301 AASI 304
                    4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2680.72
//
Query:       CCG92037.1  [L=722]
Description: Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-61  206.6   0.0    7.1e-61  206.1   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    6.3e-05   23.9   0.0    0.00016   22.6   0.0    1.7  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.1   0.0   7.9e-65   7.1e-61       7     416 ..     188     593 ..     181     600 .. 0.82

  Alignments for each domain:
  == domain 1  score: 206.1 bits;  conditional E-value: 7.9e-65
                  HSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE..... CS
  AMP-binding   7 ktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli..... 99 
                  ++++ + ++d+ +++tlT + l   + ++A+++ + +v  ++rV++llp ++  v++ l+++ aG ++v  n t +++     +e+s++k+++     
   CCG92037.1 188 ERKNLPIFIDGYSQKTLTGKVLLGIALKVASWISR-NVH-EQRVGVLLPIGAGAVIVNLGVVFAGKIPVNFNLTVGSAMNLVSIEKSKVKTVFtakmi 283
                  56677888888889*******************98.776.568**************************************************44433 PP

                  ....ETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.........-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHH CS
  AMP-binding 100 ....atvdselleklleaaakleavklvivldadellkeeelkeeeeseekae.........kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnl 184
                      +            + +  ++++++i +  ++++k + + +   +++                ++++  +  a++++TSG+ G+PKGV lsh+n+
   CCG92037.1 284 keklQ------------DFPW-PQRTIEIESLLQSFSKLSLFFHIFLADH--LstkalttlwG---VPKVGGNREAILLFTSGSFGEPKGVPLSHKNI 363
                  32220............2222.1222222222223333322222222222..02234443321...446889999*********************** PP

                  HHHHHHHH..HHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHC CS
  AMP-binding 185 vanvaslk..letrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkak 280
                  +an+a++k  l+ +    + +++l  lp++h+fg +++l++++l G + v + +   l+ + l+ lie++++ ++ ++P++l++ l++ +++      
   CCG92037.1 364 LANIAQIKsiLS-TI---PIKKLLGALPIFHSFGSTTCLWWPILGGPQTVTYVNP--LEIDKLASLIEQYQIDLLITTPTFLRQYLKKVPPE------ 449
                  ******987433.32...33689***********************999998844..4455699***********************65666...... PP

                  CGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE..........CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEE CS
  AMP-binding 281 dlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtv..........lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGell 368
                  +  sl++v++g e+l+++l+  f+++fg +v egYG TE+++v++              +++++k+gsvG+  +g+ ++i D+et +++p    G l 
   CCG92037.1 450 KIRSLKIVIVGSEKLQRQLAADFESKFGIPVCEGYGTTEAAPVISSnvvdpfqppgSIANTKRNKPGSVGQLSAGMSIRIFDQETRKELPLSARGILS 547
                  6889****************************************555789999999455677799********************************* PP

                  EEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEEC CS
  AMP-binding 369 vrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRk 416
                  ++g++++ gYl +p +ta +f  e +w+ + D+g+ld +G ++i +R+
   CCG92037.1 548 FKGANIFNGYLDDPLRTAASFQ-E-GWYLSADIGTLDNEGFIFIEDRA 593
                  *********************8.6.7*********************8 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.8e-08   0.00016      13      76 .]     625     685 ..     615     685 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.8e-08
                    EEEEEE-----TTS---EEEEEE---.---HHHHHHHHH.HHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C  13 aeaaVvGvpdevkGealvafVvlkdg.sealeeeLkahv.rkelgpyavpkkvvfvdelpktrsGK 76 
                     e a+vG+pd +kGeal+ ++    + +     ++++++ ++ +  ++ pk+v+f+++lpkt  GK
     CCG92037.1 625 IEMAIVGIPDLKKGEALALLINK--QvH---NWQIRKYLlAQGFSRLWIPKQVIFLESLPKTPLGK 685
                    589***********999988876..423...49*****9999*********************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5302.73
//
Query:       CCG92038.1  [L=184]
Description: Recombinational DNA repair protein RecO [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-08   32.8   0.0    7.8e-08   32.3   0.0    1.3  1  RecO_C    Recombination protein O C terminal
    2.2e-07   30.8   0.0    3.5e-07   30.1   0.0    1.3  1  RecO_N    Recombination protein O N terminal


Domain annotation for each model (and alignments):
>> RecO_C  Recombination protein O C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   8.7e-12   7.8e-08       1      63 [.      89     151 ..      89     153 .. 0.96

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 8.7e-12
                 GGSHHHHHHHHHHHHHHHHHS-SSS--HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHTT CS
      RecO_C   1 redlerlaaasylaElldrllpeeepnpeLFdlllatLdaLdeasdaalallvfelrlLallG 63 
                 r+d+ ++++ +y++El+ +  +e+ p pe + ll+++L  +++++ +  +++++e rlL+  G
  CCG92038.1  89 RKDWATFLCSTYFIELVVQTAEERTPIPECYTLLQKALAFIQKKPVSLKVIDRYEERLLSIHG 151
                 6899*******************************************************9988 PP

>> RecO_N  Recombination protein O N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0     4e-11   3.5e-07       5      79 ..      10      84 ..       5      85 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 4e-11
                EEEEEEEEEEEETTSEEEEEEEETT.EEEEEEEET-..TTSTTTTTS-TT-EEEEEEE.SSS-SSEEEEEEEEEE- CS
      RecO_N  5 kteaiVLksrkygEsdlivtlfTrehGkvsalargarksksrlrallqpftllevqlr.kkgrgLktlkqaeliks 79
                 t +i  ++ +y+Es+ i+   +   G ++ la+gark+ ++  a + +f + e++++  k ++L+ lk++++i++
  CCG92038.1 10 STTGIAFRKYPYSESSSILYWISSL-GCIKTLAKGARKTGKSSFAPIDLFYECELTFYvPKISDLYLLKEYQIIDP 84
                689********************88.**********8887666666*************9*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1212.29
//
Query:       CCG92039.1  [L=110]
Description: putative metalloprotease Minf_1752 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-20   71.0   0.0    9.8e-20   70.7   0.0    1.1  1  UPF0054   Uncharacterized protein family UPF0054


Domain annotation for each model (and alignments):
>> UPF0054  Uncharacterized protein family UPF0054
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   5.4e-24   9.8e-20      26     127 ..      10     102 ..       2     103 .. 0.93

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 5.4e-24
     UPF0054  26 evsvllvdneeirelnkeyrgkdkpTDVLSFpleeeeeeeelGDivisvekakeqaeeyghslerelafllvHgllHllGYDHeeeeeekeMeekeeei 124
                 ++  +l++ +e+ e+++++++  +pTDV+SF         + G+i+i++  a+++a+     + +e+ ++ +Hg+lHl+G D+++ee++++Me ++  i
  CCG92039.1  10 KLFFVLLSSKEMSEVHARFFNDPTPTDVISF---------DYGEILICPFIAEKEANARAIPVIKEVLLYGIHGMLHLCGLDDQTEEDRQKMEWMQSSI 99 
                 66678999***********************.........36********************************************************* PP

     UPF0054 125 lee 127
                 le+
  CCG92039.1 100 LES 102
                 986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 736.87
//
Query:       CCG92040.1  [L=539]
Description: Predicted membrane-associated HD superfamily hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-26   91.6  23.7    5.1e-26   91.6  23.7    1.8  1  7TM-7TMR_HD  7TM receptor with intracellular HD hydrolase
    3.4e-19   69.3   0.1    6.3e-19   68.4   0.1    1.5  1  HD           HD domain
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.019   15.1   0.0    1.4  1  HD_6         HD domain
        7.8    6.7  13.3       0.62   10.3   0.4    2.7  2  HPP          HPP family


Domain annotation for each model (and alignments):
>> 7TM-7TMR_HD  7TM receptor with intracellular HD hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6  23.7   1.1e-29   5.1e-26       6     193 .]      65     256 ..      62     256 .. 0.95

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 1.1e-29
  7TM-7TMR_HD   6 gllllvlllllilllflrrfrkelrernkkllllslllllvlllsklvvlis......siesiiylvplaavalLlsllldsrlalvvsvllsllisi 97 
                  +l++l l+l+ +  ++l+   ++++ +n+klll+++++++ ll++k v+  s      +  +i++ v  a+++lL++ l++   +++v+vl s++is+
   CCG92040.1  65 SLVFLSLILTSCTAMVLNLSLPKIFYSNSKLLLVFAVIAINLLIAKSVYVWSihqpglESRAIYFYVSTAVAPLLVTALINVHAGVIVVVLSSVFISL 162
                  689999*****************************************65544458***9999999999****************************** PP

  7TM-7TMR_HD  98 lfgnnlellllalvsglvgallvrklrsRsdllragllvalvnvlvilalsliqssnlswleiltllvlafisgllssilaigllPllEslFgilT 193
                  l++ ++ ll+  l+sg+vg+++++++ +R d+l+ag+ v+l+++++++ +++i++++ +   ++++++l ++ gl++++l+  llP+lE +F++ T
   CCG92040.1 163 LVNPSIPLLASNLLSGIVGVYFIQRICQRRDILKAGIAVGLTSLVCAVGFGIINGGDTD--VLIQQAFLSIGIGLFTAVLVNTLLPVLEEIFQLNT 256
                  *********************************************************98..999****************************9865 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.1   1.4e-22   6.3e-19       1     120 [.     281     437 ..     281     439 .. 0.91

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 1.4e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHH.......HHH......CTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          HD   1 rleHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekk.......eee......fekflaHekvgaeilrevekrlgldledvaklir 86 
                 ++ Hsl+Va++a+  a+ +g  e+  l++++a++HDiGk++++++f ++       +        + ++ +H+k+g+ ++ e+ +r+      ++++i 
  CCG92040.1 281 TYHHSLMVANIAEAAANAIG--ENGSLCRVMAYFHDIGKVVNPQYFVENqgadnphT-RltpsmsALIIISHIKDGVDLALEHHLRR-----PIIDAIQ 371
                 699*****************..***************************99888651.156777899********************.....9****** PP

                 TTCCHHHHHHHH.............................H...HHHCCTSCHHHHHHHHHHHHH CS
          HD  87 ehheswegkkrp.............................r...glaerqlslearivklaDrla 120
                 +hh+ +  ++++                             +   + +++++++e  i++laD+++
  CCG92040.1 372 QHHGTSLVYYFYrkalqniedckmgvkllkmgeedvpeldeSrfrYPGPKPQTKEIGILMLADSIE 437
                 *******99999**************9999999888877661577******************987 PP

>> HD_6  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   4.3e-06     0.019      48     123 ..     300     377 ..     272     442 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.3e-06
                 HHHHHHHHHHHHCCCGGGSSH.HHHTTS----TTS-.....-GGGT----HHHHHHHHHH..HHHHHHHHHHHTTTS-- CS
        HD_6  48 ealrrllaflaalHDlGKasp.aFqakvpelaekleeaglelekelekarHdslgaalle..evarslaaavggHHGkp 123
                  +  +l+ ++a  HD+GK+ + ++  ++ + a++ + +  +  ++l  ++H + g  l    + +r++++a+  HHG+ 
  CCG92040.1 300 GENGSLCRVMAYFHDIGKVVNpQYFVEN-QGADNPHTRLTPSMSALIIISHIKDGVDLALehHLRRPIIDAIQQHHGTS 377
                 45568999**********8651444444.4555555444555556689999999988844568999***********43 PP

>> HPP  HPP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   7.3       0.3   1.4e+03      31     114 ..      72     161 ..      51     169 .. 0.68
   2 ?   10.3   0.4   0.00014      0.62      26      65 ..     170     209 ..     163     246 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.3
         HPP  31 lisalvGvaiaklfgl......sllwlaaalavalaialmlltrtlhPPagAtaliavlgkeikelgwafllvpvllgslllvlvallln 114
                 ++++++++++   +++      +ll + a +a+ l ia  +++  +h P+  +  i+++ +++ +  +  +l++v +g++++vl +++++
  CCG92040.1  72 ILTSCTAMVLNLSLPKifysnsKLLLVFAVIAINLLIAKSVYVWSIHQPGLESRAIYFYVSTAVAPLLVTALINVHAGVIVVVLSSVFIS 161
                 3444444443333333666676677779999*******************8665555555553444455555669999999999888775 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00014
         HPP  26 vvgGhlisalvGvaiaklfglsllwlaaalavalaialml 65 
                 +++++l+s +vGv + + + ++  +l+a++av+l+ ++ +
  CCG92040.1 170 LLASNLLSGIVGVYFIQRICQRRDILKAGIAVGLTSLVCA 209
                 7899**********755555667779********998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1142  (0.0636957); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 3853.83
//
Query:       CCG92041.1  [L=323]
Description: phosphate starvation-inducible protein (PhoH-like) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-89  299.0   0.0    2.1e-89  298.4   0.0    1.3  1  PhoH             PhoH-like protein
    4.3e-10   39.6   0.0    2.8e-09   37.0   0.0    2.0  2  AAA_30           AAA domain
    1.4e-05   25.5   0.2    0.00011   22.6   0.0    2.3  2  AAA_19           AAA domain
    5.6e-05   23.0   0.0    0.00015   21.5   0.0    1.7  2  IstB_IS21        IstB-like ATP binding protein
    0.00031   20.6   0.0      0.014   15.2   0.0    2.4  2  DEAD             DEAD/DEAH box helicase
    0.00055   20.2   0.0     0.0022   18.3   0.0    1.9  1  AAA_22           AAA domain
     0.0041   16.7   0.0     0.0078   15.8   0.0    1.7  1  AAA_25           AAA domain
     0.0071   16.7   0.1      0.035   14.5   0.0    2.0  2  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.011   15.3   0.4        2.6    7.5   0.0    2.7  3  UvrD-helicase    UvrD/REP helicase N-terminal domain
      0.013   14.2   0.0      0.021   13.5   0.0    1.2  1  SNF2_N           SNF2 family N-terminal domain
      0.015   15.0   0.0      0.055   13.2   0.0    1.8  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.031   14.1   0.0        2.4    7.9   0.0    2.3  2  AAA_11           AAA domain
      0.042   13.9   0.1       0.11   12.6   0.1    1.7  1  SurA_N           SurA N-terminal domain


Domain annotation for each model (and alignments):
>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.4   0.0   1.5e-92   2.1e-89       2     204 ..     110     312 ..     109     313 .. 0.99

  Alignments for each domain:
  == domain 1  score: 298.4 bits;  conditional E-value: 1.5e-92
                 ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHHHH CS
        PhoH   2 ikpktkeQkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpaveageelGflpgdleekvdpylrplydaLkdllgaekvekll 100
                 + p+t +Qk+y+ea+k++++vf++GpaGtGKt+lava+a++a++++++k+iiltrpaveageelGflpg+leek+ pylrplydaL+++l+ e+++k+l
  CCG92041.1 110 VIPRTLNQKKYIEAIKEHELVFGLGPAGTGKTFLAVAAALAAFRDEEIKKIILTRPAVEAGEELGFLPGELEEKIFPYLRPLYDALEEMLDPEELRKML 208
                 679************************************************************************************************ PP

                 HTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------------THHHHHHTTT-TTEEEEE--GGG----HHHHH CS
        PhoH 101 ekgkievaplaymRGrTlndafvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlpkgkksGlaealevlknvegieivelkkkdvvRhplvkk 199
                 ekg ie+apla+mRGrTl+ +f+ilDEAQntt eqm mfltRlG+ s+ v+tGd+tq+dlpk+++sGl ea+++lk+v+gi ++e+++kdvvRh+lv+ 
  CCG92041.1 209 EKGIIELAPLAFMRGRTLSGSFIILDEAQNTTAEQMLMFLTRLGQRSRCVITGDPTQVDLPKHRSSGLFEAISALKSVSGICFCEFDEKDVVRHKLVRD 307
                 *************************************************************************************************** PP

                 HHHHH CS
        PhoH 200 ivkay 204
                 iv+ay
  CCG92041.1 308 IVEAY 312
                 ***99 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.48   6.6e+02      51      82 ..      18      52 ..       5      81 .. 0.75
   2 !   37.0   0.0     2e-12   2.8e-09       5     128 ..     116     266 ..     114     287 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.48
      AAA_30 51 glAptgkaAkvLaeelgieastiakllkrlk...g 82
                ++A + k  + L+e +g++  t + +l+  +   +
  CCG92041.1 18 LFANEIKNVRLLEERFGVKVTTRDGWLRIDGapdN 52
                67888888999999999999999999955555431 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 2e-12
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKttalkal.reaweaa.ggrviglAptgkaAkvLa....................eelgieastiakllkrlk 81 
                 +Q++ +ea+ +++  +++  GpAGtGKt++  a+  +a++++  +++i+  p  +a ++L+                     e  ++ + + k+l   +
  CCG92041.1 116 NQKKYIEAIKEHE--LVFGLGPAGTGKTFLAVAAaLAAFRDEeIKKIILTRPAVEAGEELGflpgeleekifpylrplydaLEEMLDPEELRKML---E 209
                 5899998776555..9************97655526666666459999999**********6665555444444444442213335666666666...1 PP

      AAA_30  82 ...........grarlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQl 128
                             r r  +g+ +i DEa  + ++q+  +l+++ +   ++++ GD+ Q 
  CCG92041.1 210 kgiielaplafMRGRTLSGSFIILDEAQNTTAEQMLMFLTRLGQ-RSRCVITGDPTQV 266
                 45799*9**9944567778***********************99.9***********6 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.1   8.4e+03      99     129 ..      36      67 ..      16      77 .. 0.56
   2 !   22.6   0.0   7.8e-08   0.00011       5     141 ..     121     266 ..     117     268 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.1
      AAA_19  99 klqeee.llivDEfqdvdelqyrLlkallgek 129
                 k++ ++ +l +D + d      +++++l + +
  CCG92041.1  36 KVTTRDgWLRIDGAPDNVRKTRKVIDQLQDAR 67 
                 33355557777776666666666666666444 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 7.8e-08
      AAA_19   5 ve.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae........atTiHrlalldfddlltealelle.. 92 
                 +e   ++++++ ++++GtGKT + +++   + + +  + ++i+l  ++  A +el     +l+++         + + ++  ld ++l     ++le  
  CCG92041.1 121 IEaIKEHELVFGLGPAGTGKTFLAVAAALAAFRDE--EIKKIILTRPAVEAGEELGFLPGELEEKifpylrplYDALEEM--LDPEELR----KMLEkg 211
                 55334566777799*******98766554444444..5589999999999999988666455555555544443333333..3333322....223344 PP

      AAA_19  93 .......eaeeekklqeeellivDEfqdvd.elqyrLlkallgekkklllvGDpdQl 141
                           + ++l ++  +i DE+q+++ e++  +l +l  ++ + ++ GDp Q 
  CCG92041.1 212 iielaplAFMRGRTL-SGSFIILDEAQNTTaEQMLMFLTRLG-QRSRCVITGDPTQV 266
                 445666644456777.999***********999999999998.66669******995 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.1e-07   0.00015      30      75 ..     110     155 ..      89     166 .. 0.79
   2 ?   -2.7   0.0         3   4.2e+03     106     135 ..     252     281 ..     231     285 .. 0.56

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.1e-07
   IstB_IS21  30 ldkrkvkeLatlsfiekkenivllGpsGvGKshlaialgveavrag 75 
                 + +r++++    + i+++e +  lGp+G+GK++la+a + +a r++
  CCG92041.1 110 VIPRTLNQKKYIEAIKEHELVFGLGPAGTGKTFLAVAAALAAFRDE 155
                 45555555566666788999999*******************9965 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3
   IstB_IS21 106 llkvdllilDdlgllpldqaeaellfevie 135
                  ++++ +i  d   ++l ++ ++ lfe i+
  CCG92041.1 252 GQRSRCVITGDPTQVDLPKHRSSGLFEAIS 281
                 234456666666666666666666666665 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   9.9e-06     0.014       3      54 ..     116     164 ..     114     172 .. 0.83
   2 ?    2.8   0.0     0.064        88     123     146 ..     229     252 ..     200     267 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.9e-06
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalive 54 
                  Q++ i++i + + v++ ++ G+GKT  ++ ++l+++   ++++ +k+++  
  CCG92041.1 116 NQKKYIEAIKEHELVFGLGPAGTGKTFLAVAAALAAF---RDEEIKKIILTR 164
                 69********************************999...344444555555 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.064
                 EEEEEETHHHHHHTTTHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 123 rflVlDEadrlldqgfsdfinril 146
                 +f++lDEa++   +++  f+ r+ 
  CCG92041.1 229 SFIILDEAQNTTAEQMLMFLTRLG 252
                 79*******999988888877754 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.6e-06    0.0022      12     117 ..     134     253 ..     126     266 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.6e-06
      AAA_22  12 GesGtGKTtllrrlleqldeeakaee.........erpevvfvtlpsstsskdllrellralglelka..........erlsseellealeqalrarav 91 
                 G++GtGKT+l+   +  + +++++++         +                + l  l  +l+++             e l+ eel+++le+ + + a 
  CCG92041.1 134 GPAGTGKTFLAVAAALAAFRDEEIKKiiltrpaveA---------------GEELGFLPGELEEKIFPylrplydaleEMLDPEELRKMLEKGIIELAP 217
                 9********998888887665555555643333321...............222222222222222222223333454567889999999999988888 PP

      AAA_22  92 ..........ielliiDEaqhlrs.eealeeLrslln 117
                            +++i+DEaq+  + e++l +L +l  
  CCG92041.1 218 lafmrgrtlsGSFIILDEAQNT-TaEQMLMFLTRLGQ 253
                 88899999999**********8.54999999977655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.6e-06    0.0078      30      65 ..     124     159 ..      98     244 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.6e-06
      AAA_25  30 lpagelallaGapgtGKttlaldlalavatGkpwlg 65 
                 + ++el+   G+ gtGKt+la+  ala  ++++  +
  CCG92041.1 124 IKEHELVFGLGPAGTGKTFLAVAAALAAFRDEEIKK 159
                 48999999******************9988876655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.4   1.9e+03     140     154 ..      59      73 ..      47      83 .. 0.85
   2 !   14.5   0.0   2.5e-05     0.035      25     139 ..     128     259 ..     118     287 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.4
      AAA_16 140 vlDdlqwadeaslql 154
                 v+D+lq+a+++ l++
  CCG92041.1  59 VIDQLQDARDQGLEI 73 
                 899999999998876 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.5e-05
      AAA_16  25 elvllsGesGvGKsslv.rellralekd................ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala 106
                 elv+  G++G+GK+ l+  ++l a++++                +  fl g+ ++         +  +l r  l+ +l+++++  el+   ek   +la
  CCG92041.1 128 ELVFGLGPAGTGKTFLAvAAALAAFRDEeikkiiltrpaveageELGFLPGELEEK--------IFPYL-R-PLYDALEEMLDPEELRKMLEKGIIELA 216
                 567778***********655555555556766666666666665566666666666........55555.4.666666666555555555554444444 PP

      AAA_16 107 avpelagaea...........srllellkrllallsrderplvl 139
                 + + ++g              +  +e++  +l +l +++r  v+
  CCG92041.1 217 PLAFMRGRTLsgsfiildeaqNTTAEQMLMFLTRLGQRSR-CVI 259
                 2222222222333334444445555555555544444344.555 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.64   8.9e+02     128     181 ..      53     103 ..      20     130 .. 0.60
   2 ?    5.0   0.1     0.011        15       5      44 ..     117     158 ..     113     173 .. 0.73
   3 ?    7.5   0.0    0.0019       2.6     259     294 ..     230     265 ..     222     266 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.64
                    HCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCH CS
  UvrD-helicase 128 dlkqqellkelleksaddslnldkkkleklikelsksrnikkeelslskskaee 181
                      k+++++ +l + + d+ l++ kk++ + +  +++++ +     +l+ksk+e 
     CCG92041.1  53 VRKTRKVIDQLQD-ARDQGLEIGKKDFHNAM--EFVEKDNGVALSDLQKSKLET 103
                    5566666666665.66666777777777553..344444444444444444433 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.011
                    HHHHHHS-SSEEEE..EE-TTSSHHHHHHHHHHHHHHTSSST CS
  UvrD-helicase   5 qreaiaslggpilv..eAsAGsGKTfvlaerilrlikeeeie 44 
                    q++ i+  +++ lv  +  AG+GKTf  ++  l   + eei+
     CCG92041.1 117 QKKYIEAIKEHELVfgLGPAGTGKTFLAVAAALAAFRDEEIK 158
                    5566666555555523457*******9999999888888543 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0019
                    EEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase 259 eiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294
                    +i  DE+Q T   Q+ ++ +   +++  ++ GDp Q
     CCG92041.1 230 FIILDEAQNTTAEQMLMFLTRLGQRSRCVITGDPTQ 265
                    7999**********9999888888889*******99 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.5e-05     0.021     178     220 ..     228     268 ..     224     286 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.5e-05
                 -SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 178 wkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsl 220
                   +++lDE+++    + ++ +++ +L ++ r ++tG P+q +l
  CCG92041.1 228 GSFIILDEAQNTT--AEQMLMFLTRLGQRSRCVITGDPTQVDL 268
                 579*******754..5678899999**************9755 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.3   1.7e+03       5      20 ..     134     149 ..     133     170 .. 0.75
   2 ?   13.2   0.0     4e-05     0.055      62     127 ..     227     292 ..     218     311 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.3
  Viral_helicase1   5 GvpGcGKStlirkllr 20 
                      G +G GK+ l + ++ 
       CCG92041.1 134 GPAGTGKTFLAVAAAL 149
                      679*****98777665 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4e-05
  Viral_helicase1  62 kgkililDEylllhaGyill.laalskaklvilfGDplQipfhsrnasfllahlpsslshrvgrrtt 127
                      +g ++ilDE++  +a ++l+ l +l + + ++++GDp Q    ++++s l    +s l +++g + +
       CCG92041.1 227 SGSFIILDEAQNTTAEQMLMfLTRLGQRSRCVITGDPTQVDLPKHRSSGLFEA-ISALKSVSGICFC 292
                      5889*********99988888******************98887666655554.4445566655555 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.034        47      13      38 ..     123     148 ..     114     170 .. 0.72
   2 ?    7.9   0.0    0.0017       2.4     220     253 ..     230     265 ..     218     268 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.034
      AAA_11  13 alseseitliqGPPGtgKTktivell 38 
                 a++e+e++   GP GtgKT+  v+  
  CCG92041.1 123 AIKEHELVFGLGPAGTGKTFLAVAAA 148
                 444555566679*******8766544 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0017
      AAA_11 220 vviIDEAaqavEpstliPlrlga..kkvvLvGDpkQ 253
                  +i DEA   +  ++l+ l +    +++v+ GDp Q
  CCG92041.1 230 FIILDEAQNTTAEQMLMFLTRLGqrSRCVITGDPTQ 265
                 689****9999999998884433469*********9 PP

>> SurA_N  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   8.1e-05      0.11      56      93 ..      62      99 ..      56     106 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.1e-05
      SurA_N 56 qlqeaektgirvddeelnqaiaeiAkeNkltldqlraa 93
                qlq a+ +g+++  ++ ++a++ + k+N++ l++l+++
  CCG92041.1 62 QLQDARDQGLEIGKKDFHNAMEFVEKDNGVALSDLQKS 99
                789********************************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2013.04
//
Query:       CCG92042.1  [L=206]
Description: Predicted flavoprotein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-24   85.8   0.0    3.4e-24   85.4   0.0    1.1  1  FMN_red       NADPH-dependent FMN reductase
    1.6e-09   37.7   0.0    2.2e-09   37.3   0.0    1.2  1  Flavodoxin_2  Flavodoxin-like fold


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   3.8e-28   3.4e-24       3     144 ..      25     159 ..      23     167 .. 0.93

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 3.8e-28
                 EEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEETTTS.--..---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-. CS
     FMN_red   3 ilvisGSlrkgsntrklaewaaealkeagaevelidladlilpcalcdkdlesegqtsddvaellekiaaadaliivtPeYngsysgllKnalDrlsrt 101
                 i +++G++r gs++r +a ++a+   + + +v++idl+ +++   ++ ++    ++t++ +  ++++ +++ +l++v PeYngs++g+lK  +D+l+r 
  CCG92042.1  25 IGIVVGTNRVGSKSRLVAAQLARIYSKLEQKVTIIDLGLMPKE--AWSGTAF--KKTPQSFLPIIRQTRDCQGLVFVFPEYNGSIPGPLKQYIDLLPR- 118
                 7899*********************9999**********9888..7876664..579***************************************96. PP

                 SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHHHHHHHTT-EEEE CS
     FMN_red 102 rgkkelrgKpvalvavgggrrgglraeeqlrqvlaelgaivvp 144
                   +++l++Kpv lv+v  g+ g++ra  +l ++l + +a + p
  CCG92042.1 119 --QEALEKKPVCLVGVTRGNFGTMRASMHLESILFYRRALIFP 159
                 ..*********************************98888766 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   2.5e-13   2.2e-09       5     103 ..      27     116 ..      24     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 2.5e-13
                   EEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCCT-----CCCCHCCHHHHTTCHHHHHHH.HHHHHCSSEEEEEEE-BTTB--HHHHHHH CS
  Flavodoxin_2   5 iinahprpeksfssalaqafvealekagphevtvrdLyadflpvlttrdlaaklayeekpadveseq.iekllaadaivlqfPlwwfgvPailKgwi 100
                   i+++  r  +s+s+ +a+++++ + k + ++vt++dL  ++    + + ++    +++          i + ++++ +v++fP ++ ++P  lK++i
    CCG92042.1  27 IVVGTNRV-GSKSRLVAAQLARIYSKLE-QKVTIIDLGLMPKEAWSGTAFK---KTPQ-----SFLPiIRQTRDCQGLVFVFPEYNGSIPGPLKQYI 113
                   78888888.6******************.9**********99999999998...6666.....3334445579************************ PP

                   HHH CS
  Flavodoxin_2 101 Drv 103
                   D  
    CCG92042.1 114 DLL 116
                   *86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1564.67
//
Query:       CCG92043.1  [L=368]
Description: Alanine dehydrogenase 2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-74  248.2   0.1    6.5e-74  247.8   0.1    1.2  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    2.3e-41  141.3   0.0    3.8e-41  140.6   0.0    1.3  1  AlaDh_PNT_N    Alanine dehydrogenase/PNT, N-terminal domain
    0.00014   21.3   0.0    0.00029   20.3   0.0    1.5  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    0.00055   20.3   0.0     0.0015   19.0   0.0    1.7  1  NAD_binding_7  Putative NAD(P)-binding
  ------ inclusion threshold ------
      0.051   13.6   0.0      0.095   12.8   0.0    1.3  1  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
      0.071   13.3   0.0       0.13   12.5   0.0    1.4  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
      0.071   13.7   0.1       0.18   12.4   0.1    1.7  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.44    9.9   2.8       0.96    8.7   1.5    2.1  2  ThiF           ThiF family


Domain annotation for each model (and alignments):
>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.8   0.1   2.9e-77   6.5e-74       1     213 [.     139     350 ..     139     351 .. 0.99

  Alignments for each domain:
  == domain 1  score: 247.8 bits;  conditional E-value: 2.9e-77
                  HHHHHHHHCSCGCTSEEETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEEHCHHHHHHHHHHHH-SEEEE CS
  AlaDh_PNT_C   1 AvleaakalekffggkgtlaGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvevlksqeellaeavkeadvvig 97 
                  A+++aa++le+ +gg+g+l+Ggvpgvepa+v ++GgG++G++A+++a glga+ tv+D+  ++l+ l++ +g+k +++++++  +++e++++ d++ig
   CCG92043.1 139 AIQHAARILERNHGGMGILLGGVPGVEPARVAIVGGGTVGTNALKMALGLGADLTVFDICLKKLRLLDDlFGGK-IKTIMANPYTIEERISSFDLLIG 235
                  89*******************************************************************99999.*********************** PP

                  ---BTTSS---SC-HHHHHTS-TTEEEEETTGGGT-SBTT-.-TBBTTSEEEEETTEEEEEBSTGGGGSHHHHHHHHHHHHHHHHHHHCHHHTCCHHH CS
  AlaDh_PNT_C  98 tvlipGkkaPkLvteemvksMkpgsVivDvAidqGGnvets.rltthgepvveekgvvhygvanlpgavprtasalltnntlpyleelladkglkkal 194
                  +vl pG+k+Pk+++++m+++M+pgsV++D++idqGG++et+ ++tth++p++ + g++hy+van+p+avprta+++ltn+t+ +++ l a++gl  a 
   CCG92043.1 236 AVLNPGAKSPKVISKQMIEKMRPGSVVMDISIDQGGCIETIdKPTTHDNPTFIKSGIIHYAVANIPAAVPRTATYALTNATFYWINLL-ANHGL-IAT 331
                  ****************************************************************************************.*****.99* PP

                  CTSHHHHCCEEEETTEESS CS
  AlaDh_PNT_C 195 kedealrkglvvkkGkvtn 213
                  k d+a+++++++ +G++t 
   CCG92043.1 332 KYDPAIKTAINTIRGELTC 350
                  ****************986 PP

>> AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.0   1.7e-44   3.8e-41       1     136 []       4     135 ..       4     135 .. 0.98

  Alignments for each domain:
  == domain 1  score: 140.6 bits;  conditional E-value: 1.7e-44
                  EE---SSTT----SS-HHHHHHHHHTT-EEEEETTTTGGGTC-HHHHHHTTEEEESCHHHHCTTSSEEEESS--.CHCGGGS-TTCEEEEE--GGCHH CS
  AlaDh_PNT_N   1 gvpkEikagErRvaltPatvkkLvkaGhevlVesgaGegagfsdeeYeeaGaeivesaeevlaeadlilkVkepseeelellkegqtlisflhlaanp 98 
                  g+pkEik+gE+Rv+l+Pa v++Lv++Gh+vlVe +aG ++gf++eeY +aGa +v+++ e++  +dl++kVkep   e++ +++  +l++flhlaan+
   CCG92043.1   4 GIPKEIKEGENRVSLSPACVRSLVESGHTVLVELDAGRESGFTNEEYLKAGALLVSAE-EAWG-SDLVVKVKEPLGTEYRFFRKSMILFTFLHLAANR 99 
                  89*****************************************************766.****.********************************** PP

                  HHHHHHHHCTEEEEEGGG-BSSGCCGGGTHHHHHHHHH CS
  AlaDh_PNT_N  99 ellealaekgvtaialElvprisraqsldaLssmaeia 136
                   l+eal+ek+vtaia+E+++   ++ +l++L +m+eia
   CCG92043.1 100 RLTEALLEKEVTAIAYETLKLP-DG-TLPLLIPMSEIA 135
                  *********************5.99.9*********98 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.3e-07   0.00029      35     127 ..     165     266 ..     158     276 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.3e-07
                   TTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH........CHHHHTCEECSHHHHHHH-SEEEE-S.--STTTTTSBSHHHHHCSTTTEE CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee........eeeelgvelvsleellaesDivslhl.pltpetrhlinaeelakmkkgai 122
                   +  +v+i+G G +G+++ k++ ++g++++++d   kk +        + ++  ++  ++ee +++ D ++ ++ +  ++  ++i++++++km++g++
    CCG92043.1 165 EPARVAIVGGGTVGTNALKMALGLGADLTVFDICLKKLRllddlfggKIKTIMANPYTIEERISSFDLLIGAVlNPGAKSPKVISKQMIEKMRPGSV 261
                   5679******************************9976677778888899999999***********98865516788999***************9 PP

                   EEESS CS
  2-Hacid_dh_C 123 liNta 127
                   ++ ++
    CCG92043.1 262 VMDIS 266
                   98765 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   6.6e-07    0.0015       7      72 ..     166     240 ..     163     257 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.6e-07
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvapevkeele............elvklaeeelekdlegadlviaatddr 72 
                      +v +vGgG+v+++ ++  l  ga++tv + ++k   +            +++ +++ ++e+ ++ +dl+i a+ ++
     CCG92043.1 166 PARVAIVGGGTVGTNALKMALGLGADLTVFDICLK---KlrllddlfggkiKTIMANPYTIEERISSFDLLIGAVLNP 240
                    679**************************999952...22356688887667777889999*********99998776 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.3e-05     0.095      11     112 ..     165     266 ..     160     269 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.3e-05
                   TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.E.T-EEEEGCGHHHHHHT-SEEEE-SSSSS-....SB-HHHHHCCHHH. CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkge.eiealkleelkellaeadvvisataseep....ilekeeveealkkr 102
                   + ++v ++G G +++ ++k+ l  g++ ++v+   l++ + l + ++g+ ++ + +   ++e+++++d++i a+  + +    +++k+++e++    
    CCG92043.1 165 EPARVAIVGGGTVGTNALKMALGLGAD-LTVFDICLKKLRLLDDLFGGKiKTIMANPYTIEERISSFDLLIGAVLNPGAkspkVISKQMIEKMRPG- 259
                   6789*********************99.**************999966614455566689*************95543311127777777766543. PP

                   S..EEEEE-- CS
  Shikimate_DH 103 kkplllvDia 112
                       +++Di+
    CCG92043.1 260 ---SVVMDIS 266
                   ...6888887 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.6e-05      0.13       2      90 ..     169     266 ..     168     292 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.6e-05
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.......EEE-SSHHHHHHHCSEEE.E-SSSHHHHHHHHHS.HCCC--TT-EEEE CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.......akaaesieelvasldvvi.tmvkagkavdevieg.llealkkgdilid 88 
                    ++++G G+ G+n  +  l  g +++v++   +k++ l +         +   ++iee ++s d+ i  +++ g++  +vi++ ++e++++g++++d
     CCG92043.1 169 VAIVGGGTVGTNALKMALGLGADLTVFDICLKKLRLLDDLFggkiktiMANPYTIEERISSFDLLIgAVLNPGAKSPKVISKqMIEKMRPGSVVMD 264
                    899*************************9988876665553457887766678999999999876625667789999999999************* PP

                    -S CS
  NAD_binding_2  89 gs 90 
                     s
     CCG92043.1 265 IS 266
                    98 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   8.2e-05      0.18       1      42 [.     168     209 ..     168     220 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.2e-05
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHH CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeea 42 
                 +v++vGgG++g  + +++  lg++ tv++   k lrllD+ +
  CCG92043.1 168 RVAIVGGGTVGTNALKMALGLGADLTVFDICLKKLRLLDDLF 209
                 79*************************998777777777655 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.5   0.00043      0.96      17      49 ..     165     196 ..     149     207 .. 0.82
   2 ?   -0.7   0.0      0.32   7.2e+02     147     198 ..     259     312 ..     216     345 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00043
                 HTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  17 rdskvllvGaGglGsellknLalsGvgkltlvD 49 
                 + ++v++vG G++G ++lk+  ++G   lt++D
  CCG92043.1 165 EPARVAIVGGGTVGTNALKMALGLGA-DLTVFD 196
                 5689***************9888885.455555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.32
                 EEEEEEEE.CCS-ECTSS-TGGS.EECCCCEEHHHHHHCT.........E-B-HHHHHHHHH CS
                 xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxx RF
        ThiF 147 gqvvviip.gktgcyeCldpsstedptekkvplctsiagn.........ipaiatttavvag 198
                 g vv+ i+ ++ gc+e  d     +pt +  p++   ++          ipa  + ta  a+
  CCG92043.1 259 GSVVMDISiDQGGCIETID-----KPTTHDNPTF---IKSgiihyavanIPAAVPRTATYAL 312
                 5666665667888888885.....6777777777...2222355555557777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2599.29
//
Query:       CCG92044.1  [L=224]
Description: Lipoate-protein ligase A [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-13   50.5   0.0    3.3e-13   49.7   0.0    1.3  1  BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family


Domain annotation for each model (and alignments):
>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   1.8e-17   3.3e-13      19     126 ..      55     167 ..      47     170 .. 0.91

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.8e-17
                    GG--TT-EEEEEEESS-B-B--B-TTSEEEEEEEEESS...-CCGTHHH..HHHHHHHHHHHH..........HHTT-TTEEEE.TTTEEEETTEE CS
  BPL_LplA_LipB  19 selesgglvvvrrqtgGrnvwhspkgeltyslllspeqktfqnrvlely..vsllvlavlealg..y.rd.skpgiegipvfik.wpnDlyvngrK 107
                    ++  s+ +++vrr tgG +v h+   +  y+l++ ++++  + + +  y  +++ +  ++ +lg  +  +  ++++eg+ +f k  + Dl+ + +K
     CCG92044.1  55 WKEVSPDTKFVRRYTGGGAVQHG--KDCVYALIVPKDHSFCKIAATDTYfsIHRAIGVGISKLGleTtLYgGEKKQEGAFCFQKpVKHDLMWGAEK 148
                    55568999***************..9999*******************999************985243369************************ PP

                    EEEEEEEEEETTS-EEEEE CS
  BPL_LplA_LipB 108 laGiavtstrgktlhhivi 126
                    +aG a++++r + lh+++i
     CCG92044.1 149 IAGAAQRRNRKGLLHQGSI 167
                    *****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1596.99
//
Query:       CCG92045.1  [L=148]
Description: Peptidyl-prolyl cis-trans isomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-34  118.1   0.0    2.6e-34  117.4   0.0    1.4  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.0   1.4e-38   2.6e-34       5      94 .]      57     145 ..      53     145 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 1.4e-38
                 B-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   5 akegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 +++g+++t++y+gkledgk+fdss+sr+kp++f++G  ++ikG+ee++++mk G+kr+l+ipp+l+Yg +g+ + vippnatL+F++e+l
  CCG92045.1  57 VAPGKRITLNYVGKLEDGKIFDSSLSRGKPFSFVLGVSRMIKGWEEGVSTMKEGGKRRLIIPPDLGYGTEGV-EDVIPPNATLIFDIEVL 145
                 5789********************************************************************.88*************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       199  (0.0110993); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1151.97
//
Query:       CCG92046.1  [L=299]
Description: Geranylgeranyl pyrophosphate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-56  190.1   0.0    4.5e-56  189.8   0.0    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.8   0.0   2.5e-60   4.5e-56       2     230 ..      35     265 ..      34     282 .. 0.90

  Alignments for each domain:
  == domain 1  score: 189.8 bits;  conditional E-value: 2.5e-60
                      HHHHHHHHHHHHSSS--HHHHHHHHHHHHHSCGHHHHHHHHHHHHHHHHHHHHHHHHHHH..HTT-SEETTEE-HHHCTCHHHHHHHHHHHHHH CS
  polyprenyl_synt   2 elleealeylveagGKrlRpllvllaaealkeeeeelekaavlawivellhaasLvhDDi..mDdsetRRGqpcahrlvGnklAindgdfllar 93 
                      ++l+ea++y + +gGKrlRp+l+l+ a+ +      ++ a+ +a++ve++h++sL+hDD+  mD++++RRG+p+ h+++G+++Ai++gd+lla+
       CCG92046.1  35 RILHEAIDYSLFSGGKRLRPILCLAGAHTVCM---ATDCALPMACAVECIHTYSLIHDDLpsMDNDDFRRGKPSLHKIYGEAMAILTGDALLAL 125
                      57999**************************3...4599******************************************************* PP

                      HHHHHHHHH...STT...HHHHHHHHHHHH.HHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHHHHHHHHHH CS
  polyprenyl_synt  94 afellaklf...eks...lellelfsevll.qtveGqlldleeekdddlskfsleeyleivkyKTaylfalpvalaallagasdeelealkdig 180
                      afe+ + +    +++   + + el + +    +v Gq+ dle+e  +++    l++ + i+ +KTa+l+ ++++l+a+ a+a++++l+ ++++g
       CCG92046.1 126 AFEIASLCSplgSSYplsTMIWELARAAGSrALVAGQVADLESE-GKEIG---LTQLRYIHCRKTAALITVALRLGAMSANADEKTLRLITKYG 215
                      ****99887887555553555666655544699********666.68888...99***************************99********** PP

                      HHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HH CS
  polyprenyl_synt 181 lelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelaspe 230
                      + lGlaFQi+DD+lD+++++e lgK ag+D + +k+t+p +  le+++++
       CCG92046.1 216 RSLGLAFQIIDDILDVTQTTEILGKSAGKDQKAKKATYPRIMGLEYSKKA 265
                      *********************************************77655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2129.26
//
Query:       CCG92047.1  [L=111]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.048   13.8   0.0      0.086   13.0   0.0    1.4  1  ABM       Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.8e-06     0.086       3      44 ..      20      58 ..      19      68 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.8e-06
                EEEEEEEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEE CS
         ABM  3 iviaeirvkpgqaeafldafaeavesllaeepGclgyellrs 44
                +vi+e++++p++ + f++a++ a++ l  ++  +l+++l+++
  CCG92047.1 20 TVIIEVEADPEKSHRFAEALRVAAG-L--SMHPFLSVSLVLK 58
                79*********************99.4..6666888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 853.37
//
Query:       CCG92048.1  [L=82]
Description: hypothetical protein MFUM_30001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 602.42
//
Query:       CCG92049.1  [L=80]
Description: hypothetical protein MFUM_30002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.31s 00:00:00.71 Elapsed: 00:00:00.47
# Mc/sec: 513.50
//
Query:       CCG92050.1  [L=87]
Description: hypothetical protein MFUM_300001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       160  (0.00892409); expected 358.6 (0.02)
Passed bias filter:                      151  (0.00842211); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 667.10
//
Query:       CCG92051.1  [L=54]
Description: hypothetical protein MFUM_300002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      131  (0.0073066); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 424.96
//
Query:       CCG92052.1  [L=377]
Description: ABC-type phosphate transport system, periplasmic component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-56  190.1   0.0    7.8e-56  189.8   0.0    1.0  1  PBP_like_2  PBP superfamily domain
    1.4e-09   38.4   0.0    1.3e-08   35.1   0.0    2.1  1  SBP_bac_1   Bacterial extracellular solute-binding protein
    1.4e-09   37.4   0.0    4.2e-09   35.8   0.0    1.7  1  PBP_like    PBP superfamily domain


Domain annotation for each model (and alignments):
>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.8   0.0   1.3e-59   7.8e-56       6     281 ..      30     314 ..      27     315 .. 0.86

  Alignments for each domain:
  == domain 1  score: 189.8 bits;  conditional E-value: 1.3e-59
  PBP_like_2   6 atsvgeifgaGsttpapalrkladafekaapgakvnyastGSgagikalrngdvdfagsdrplteseiaagwaangaggliqvpvaigaialvvnkd.n 103
                 ++    ++gaG ++p+p++ k+   + k  p +++ny++ GSg+gi +l++ ++dfagsd+p+ +s i    ++ + ++ i++p + ga+++++n+   
  CCG92052.1  30 SPPI--LNGAGGSFPYPLYSKWYFEYTKIDPSIRFNYQPIGSGGGIHQLLSHTIDFAGSDSPIPDSLI----TGSS-REVIHIPTVAGAVVIAYNVAnI 121
                 5556..89**********************************************************55....4555.9*****************6545 PP

  PBP_like_2 104 pln.lsreaLakIfsgkItnWnd........vlglpadgpIkvvhrsdgsgttflfstalaeq.............gpwt.asgigasgsegvasavsn 179
                 pl  l++e++++If g+It Wnd         ++lp d pI v+hrsdgsgtt  f+++l++                   + giga+g+ gva a+++
  CCG92052.1 122 PLLnLDKETISGIFLGEITRWNDprivslnpQATLP-DLPIVVIHRSDGSGTTYIFTEYLSKIsqrwailagkgtsV--RwQIGIGAKGNAGVAAAIKT 217
                 5555**************************866665.***********************97787776666555552..05679*************88 PP

  PBP_like_2 180 .ngaigyvsvaywlavkgysladvtngagkfvlptaataasalkvakias.nplawslqpveeniadgayPlsrftyiivyqpyayhgnnaalakaFld 276
                  ng igy+++ay+l++ g ++a+++n +g++v+p+  ++++a +     s +  +   +++ +++ +gayP+ + t+i+ + + +++    + + +Fl+
  CCG92052.1 218 iNGSIGYIELAYALQN-GFPMAAIQNQTGQYVAPSMDSVTKAFPR----SfD-HKDFRISLTDSAEEGAYPIAGLTWILLNINSTPP-LRLECLIKFLS 309
                 8***************.******************9999999999....533.3333566777888*************99865444.44777888888 PP

  PBP_like_2 277 yllsd 281
                 ++l+d
  CCG92052.1 310 WALTD 314
                 88775 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   2.3e-12   1.3e-08      19     313 ..      54     316 ..      33     318 .. 0.67

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.3e-12
                 HHHHTTEEEEEEEECHHHHHH...HHHHHHHTTS...SSCSEEEECGGHHHHHHHT..TSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCEEEESE CS
   SBP_bac_1  19 ekehpgikVeiesvgsgslaq...kltlaiaaGd...gpaDviavdndwiarlaka..glllpldpyvkaylapgvkdaadklsssvlpkildskvlyv 109
                 +k  p i ++++++gsg+++      t+++a++d   ++  +i+++++       +    ++  +++v+ay++   +   ++l++++  +i+       
  CCG92052.1  54 TKIDPSIRFNYQPIGSGGGIHqllSHTIDFAGSDspiPD-SLITGSSR-------EviHIPTVAGAVVIAYNVANIP--LLNLDKETISGIFL------ 136
                 555555555555555555444455455555555544322.44444222.......2224555555555555444433..55555555555555...... PP

                 EEEEEEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCT.HCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT..................... CS
   SBP_bac_1 110 PlyaargliYNkdlfekagldppwtWdelveaakklkekgkkp.iggarggsasgtayyfalalakslggkvfdkdgg..................... 186
                       g                + W+++ ++  ++ +  +   i++++++++sgt+y+f+++l+k +  ++                           
  CCG92052.1 137 ------GE--------------ITRWNDPRIVSLNPQATLPDLpIVVIHRSDGSGTTYIFTEYLSKISQ-RW-----Ailagkgtsvrwqigigakgna 209
                 ......44..............55*********************************************.22.....233334677888899**99998 PP

                 HHCSHHHHS..HHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE CS
   SBP_bac_1 187 gldnpegvt..aatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi 283
                 g+++ +     +++y++ +ya +n   + +++  +n++g+ +++ +    +  a+  +            ++f ++  +  ee ++++           
  CCG92052.1 210 GVAAAIKTIngSIGYIELAYALQN---GFPMAAIQNQTGQYVAPSMD--SVTKAFPRS---------FDHKDFRISLTDSAEEGAYPI----------- 283
                 655555555699********9999...99999999999999999886..222222222.........335677777777777777777........... PP

                 EEEEEEEEBTTCSTHHH....HHHHHHHHTSHHH CS
   SBP_bac_1 284 lgayglaipkgsknpea....AkkFldfllspea 313
                   + ++++++ ++ p        kFl ++l++++
  CCG92052.1 284 -AGLTWILLNINSTPPLrlecLIKFLSWALTDGQ 316
                 .777777777777777777777777777777766 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   7.1e-13   4.2e-09       6     149 ..      55     224 ..      51     242 .. 0.65

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 7.1e-13
                 HH-TTCEEEEEES-HHHHHHHHHTTS-SEEEESS---CCCH.......HCCCCCEEEEEEEEEEEE-CC-HCHCCCCHCCHHHS............... CS
    PBP_like   6 eknpgvrvavanvGsggGlkalrageadiagshlldketee.......ynapalrkaldgievvlvnlarreqglvvakgnpkk............... 82 
                 +  p++r++++ +GsggG+++l   ++d ags+ +++++         + +p++           v  a+  + + +   ++                 
  CCG92052.1  55 KIDPSIRFNYQPIGSGGGIHQLLSHTIDFAGSDSPIPDSLItgssrevIHIPTVA--------GAVVIAYNVANIPLLNLDKETisgiflgeitrwndp 145
                 556999*****************************87664422222223333332........223333333333333332221223334443333333 PP

                 ....--BGGGC-S-B-EEEEE-TTSHHHHHHHHHHC-CEECT..........E-SSTTSEEESSHHHHHCCHCCETTCCEC CS
    PBP_like  83 ....itnwkdladaplrlvnRetGSGtrdlfdellkkegisk..........ssikgyaqearshlavaaaVaagradvgv 149
                     ++  + l+d p++++ R  GSGt + f+e l+k  is+          s + + +  a+ +  vaaa+++ ++ +g+
  CCG92052.1 146 rivsLNPQATLPDLPIVVIHRSDGSGTTYIFTEYLSK--ISQrwailagkgtSVRWQIGIGAKGNAGVAAAIKTINGSIGY 224
                 33334444555999*********************77..666677777766655555566777777778888887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2356.63
//
Query:       CCG92053.1  [L=341]
Description: ABC-type phosphate transport system, permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-16   58.5  17.0    4.1e-15   56.0  16.9    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.036   6.5e+02     143     178 ..      22      56 ..      11      61 .. 0.84
   2 !   56.0  16.9   2.3e-19   4.1e-15       1     180 [.     108     323 ..     104     325 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.036
  BPD_transp_1 143 eailgydyseisnggvlalviavlllnlvadilqrl 178
                   +++ g+ + e+  +++l++ +a++l +l++++ ++l
    CCG92053.1  22 HINRGQKFKENV-FTLLVYCCAFILPTLLVFAAYEL 56 
                   667788888888.99999999999999999998876 PP

  == domain 2  score: 56.0 bits;  conditional E-value: 2.3e-19
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf....................vilsilg.hlilpviillllsaapyvrlirraal 76 
                   g+++++++  ++ ++l+k l +li++++++Ps+v+++  ++ +                    ++++ ++  + l++ ++++++++p+++ ++ +++
    CCG92053.1 108 GLGTALFLTEFSPRWLQKPLIILIQIISAIPSVVWGLWALFELipwlqkyvvpflkdhlgflpFFQGNFYgVSLLSGSLVVAIMILPIMISVTIEMI 204
                   4566667779999*********************777755333667799999999999999997777777467777********************* PP

  BPD_transp_1  77 rslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG...lgtllleailgydyseis............nggv 158
                   +s+p+ ++ea  alG ++w+ +r  vlP +   ++  +il +g+++g+a+++ +++++ +   l++l    +l++ +++              + ++
    CCG92053.1 205 KSVPSIYKEAIFALGSTHWESIRIGVLPFIRKGLLGVAILGLGRAIGEAMAVTMVIGNRPeisLSLLSPAYTLSSVLANEFaestselhisalYEIA 301
                   ********************************************************88888884444444444444444446666888877777999 PP

  BPD_transp_1 159 lalviavlllnlvadilqrlld 180
                   l l+++++++nl+a ++   l+
    CCG92053.1 302 LLLGAITIVVNLLAQLFIHGLE 323
                   9999999999999998877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2473.79
//
Query:       CCG92054.1  [L=279]
Description: ABC-type phosphate transport system, permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-24   84.5   5.2    7.4e-24   84.5   5.2    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.094   12.7   0.3         15    5.6   0.0    3.3  3  UcrQ          UcrQ family
        1.1    9.8  23.0       0.73   10.3   1.2    3.8  3  FtsX          FtsX-like permease family


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   8.4     0.054   3.2e+02      11      61 ..      10      82 ..       2      86 .. 0.82
   2 !   84.5   5.2   1.2e-27   7.4e-24       2     176 ..      84     275 ..      83     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.054
  BPD_transp_1 11 nrnkkldkllrpliivllslPsfvlaillvlvf......................vilsilghlilpviilll 61
                  +  ++l kll  +  ++  lP++++++ l+++                       + +si+g+lil++++ l+
    CCG92054.1 10 KLENFLVKLLCAFASFFVILPFVLILVYLIVAGassinfdfitqlpkpigekgggMANSIVGTLILMGLTFLI 82
                  5567777889999999999999999999998779999999999999999999999888888988888776655 PP

  == domain 2  score: 84.5 bits;  conditional E-value: 1.2e-27
  BPD_transp_1   2 illGilaa....lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasr 94 
                   +++Gil++     + n kl+k++r+  ++l ++Ps+v++il++ ++ ++   g++++++ i+l l ++p+v++++++ l  +pk+l+ aa+alG ++
    CCG92054.1  84 TPIGILSGvfvsEYGNEKLRKIVRFSADLLNGTPSIVIGILVYGWI-VSPMHGFSVMAASIALSLIFIPLVLRTTEESLLLVPKELRDAALALGIRK 179
                   6677777777669****************************99763.33345699999*************************************** PP

  BPD_transp_1  95 wqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..................nggvlalviavlllnlvad 173
                   w+++++v++  a+  i++g+++a++++ g+++ l+f++    +g++ ++  l  ++s+                    ++g+l+l+++++ll l+++
    CCG92054.1 180 WKVVCYVLIETAKQGILSGILVALARIAGETAPLLFTA----FGNQYWTYRLDEPISALPlqifeyaispyeqwhrdaWAGALVLLLLIFLLHLSVR 272
                   **************************************....***************999****************999999999999999999999 PP

  BPD_transp_1 174 ilq 176
                   il 
    CCG92054.1 273 ILL 275
                   986 PP

>> UcrQ  UcrQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.22   1.3e+03      46      60 ..      25      41 ..      15      47 .. 0.60
   2 ?    2.6   0.0     0.022   1.3e+02      39      62 ..     106     129 ..      98     135 .. 0.88
   3 ?    5.6   0.0    0.0026        15      13      23 ..     238     248 ..     235     260 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.22
                HHHHHHHH..HHHHHHH CS
        UcrQ 46 lyvlppfi..iayliyk 60
                ++v++pf+  ++yli++
  CCG92054.1 25 FFVILPFVliLVYLIVA 41
                45555554114455554 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.022
                 CTTTTTHHHHHHHHHHHHHHHHHH CS
        UcrQ  39 rRtksqvlyvlppfiiayliykwa 62 
                  R+++ +l   p ++i++l+y w 
  CCG92054.1 106 VRFSADLLNGTPSIVIGILVYGWI 129
                 599999***************996 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0026
                 EEEEEE-GGGB CS
        UcrQ  13 iitYslSPfeq 23 
                 i +Y++SP+eq
  CCG92054.1 238 IFEYAISPYEQ 248
                 899*******9 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   2.3      0.06   3.6e+02      67      88 ..      25      45 ..      10      52 .. 0.55
   2 ?    7.6   4.7   0.00086       5.1      25      79 ..      76     130 ..      62     156 .. 0.61
   3 ?   10.3   1.2   0.00012      0.73       8      95 ..     173     278 ..     171     278 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.06
        FtsX 67 itvliiivlllllallagllsi 88
                + v++ +vl+l+ +++ag +s+
  CCG92054.1 25 FFVILPFVLILVYLIVAG-ASS 45
                233333333333333333.333 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00086
        FtsX  25 illitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllll 79 
                 + l++l++++iG++ g++++++ + +l ++v  s+  ++  +++v+ i+v ++++
  CCG92054.1  76 MGLTFLIGTPIGILSGVFVSEYGNEKLRKIVRFSADLLNGTPSIVIGILVYGWIV 130
                 567899************************8832222233333333333332222 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00012
        FtsX   8 ralGmkkkqvlllllteillitlvalviGlgl...................gllaaqllsdvllssvfsselkisidlitvliiivlllllallaglls 87 
                 +alG +k++v+  +l+e++  ++++ ++  ++                    + + +++s++ l+++   +++++ ++   + + +l+lll+++ + ls
  CCG92054.1 173 LALGIRKWKVVCYVLIETAKQGILSGILVALAriagetapllftafgnqywTYRLDEPISALPLQIFE-YAISPYEQWHRDAWAGALVLLLLIFLLHLS 270
                 69**********************99999666565555544444443333333333334444444444.555555555544444444444455555599 PP

        FtsX  88 iskilkke 95 
                 ++ +lkk+
  CCG92054.1 271 VRILLKKN 278
                 99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2380.20
//
Query:       CCG92055.1  [L=273]
Description: high-affinity phosphate transport protein (ABC superfamily, atp_bind) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-30  106.2   0.0    2.4e-30  105.8   0.0    1.2  1  ABC_tran      ABC transporter
    1.9e-11   44.3   0.0    2.1e-05   24.5   0.0    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    2.6e-06   27.0   0.0    7.8e-06   25.5   0.0    1.7  1  SMC_N         RecF/RecN/SMC N terminal domain
    6.8e-05   22.9   0.0    0.00011   22.2   0.0    1.3  1  Rad17         Rad17 P-loop domain
    8.4e-05   22.9   0.0     0.0002   21.7   0.0    1.8  1  AAA_22        AAA domain
     0.0011   19.4   0.0     0.0036   17.7   0.0    1.9  1  AAA_16        AAA ATPase domain
     0.0033   17.9   0.1     0.0072   16.8   0.1    1.5  1  AAA_23        AAA domain
     0.0043   17.0   0.0     0.0092   15.9   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.031   14.0   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
      0.014   15.1   0.0      0.065   13.0   0.0    1.8  2  AAA_30        AAA domain
      0.016   15.6   0.0       0.71   10.3   0.0    2.3  2  RNA_helicase  RNA helicase
      0.017   15.3   0.0      0.032   14.4   0.0    1.5  1  AAA_33        AAA domain
      0.034   13.0   0.1       0.06   12.1   0.1    1.3  1  Adeno_IVa2    Adenovirus IVa2 protein
      0.038   14.5   0.0      0.071   13.7   0.0    1.5  1  AAA_18        AAA domain
      0.056   13.2   0.0       0.11   12.2   0.0    1.4  1  AAA_15        AAA ATPase domain
      0.062   13.0   0.0       0.09   12.5   0.0    1.2  1  PRK           Phosphoribulokinase / Uridine kinase family
      0.069   12.9   0.0       0.19   11.4   0.0    1.7  2  AAA_24        AAA domain
      0.099   11.8   0.0       0.13   11.4   0.0    1.3  1  G-alpha       G-protein alpha subunit
       0.17   11.3   0.0        8.8    5.7   0.0    2.1  2  TniB          Bacterial TniB protein
       0.19   12.0   0.0       0.42   10.8   0.0    1.6  1  AAA_28        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0   2.7e-33   2.4e-30       2     136 ..      42     197 ..      41     198 .. 0.95

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 2.7e-33
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.....SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH.............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp.....teGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren.............. 79 
                  n+s+++   +++ai+G++G+GKSt+l++l ++++       eG+++l gk++     + +  r+++g+++q+++ fp+++++en              
  CCG92055.1  42 FNISMNIFYQQILAIIGPSGCGKSTFLRCLNRMHELspgvrVEGSVKLMGKEIYAadVDPTLIRRRVGMVFQKSTPFPTMSIEENvliglklagirnrs 140
                 59*****************************99887779999***********998788899********************************99988 PP

                 HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                   +e++e+ l+   l +  +++++  ++sLSgGq+qr+++ara++ +p++ll+DEp+
  CCG92055.1 141 FLEERLEQSLRMAALWDEVKDRLEAPGTSLSGGQQQRLCIARAIAVQPEVLLMDEPC 197
                 77888******************9999*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.4e-06    0.0021       2      26 ..      54      78 ..      53     124 .. 0.76
   2 !   24.5   0.0   2.4e-08   2.1e-05     200     299 ..     140     228 ..     117     230 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.4e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllarld 26
                 ++iGp g+GKS++L++l  ++ l 
  CCG92055.1 54 LAIIGPSGCGKSTFLRCLNRMHELS 78
                58****************9997763 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 2.4e-08
      AAA_21 200 sdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 s+l+e+ e++ + + +       + e +d+ e p ++lS G+++ l+++ a++ ++    +ll DEp + L+P +++ + el+ +l++ +  ++l+TH+
  CCG92055.1 140 SFLEERLEQSLRMAAL-------WDEVKDRLEAPGTSLSGGQQQRLCIARAIAVQP---EVLLMDEPCSALDPIATAQIEELIVSLKK-NYTIVLVTHN 227
                 4444444444444444.......4558999999999*********99999999999...9*************999999999988888.899******9 PP

      AAA_21 299 p 299
                  
  CCG92055.1 228 L 228
                 5 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   8.7e-09   7.8e-06      22     200 ..      49     229 ..      38     242 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 8.7e-09
                 TTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--....BTTCSSTTEEEEEEEEEETTEE.SSSSSSCEEEEEEEETTSEEEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  22 fsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk....skekasvkkaeveitfdnedkk.lkiekeevsisrrvkrkgeseyking 115
                 f +++ ai+Gp G+GKs +l  +   + e  +  +r e   +l+ k     +  + + + +v ++f+++    +   +e+v i  ++         i +
  CCG92055.1  49 FYQQILAIIGPSGCGKSTFLRCLN-RMHEL-SPGVRVEGSVKLMGKeiyaADVDPTLIRRRVGMVFQKSTPFpTMSIEENVLIGLKL-------AGIRN 138
                 678899*****************5.45543.347999998888777666578888899999*****999887322223334444333.......33344 PP

                 EEE-HHHHHHHHHCTT-STT..........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHH CS
                 xxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 116 kevtkkevsellesagiske..........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislree 200
                 ++  ++ +++ l++a +  e          +LSgG+++ + +a  +A+q   p+ + l+De  +aLD   ++++ el+ + +kn  ++ ++++ +
  CCG92055.1 139 RSFLEERLEQSLRMAALWDEvkdrleapgtSLSGGQQQRLCIARAIAVQ---PE-VLLMDEPCSALDPIATAQIEELIVSLKKNYTIVLVTHNLQ 229
                 4444444444444444444444444455559******999999888875...55.569***************************9999999865 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.2e-07   0.00011      43      70 ..      49      76 ..      28      87 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.2e-07
       Rad17 43 rkkriLLisGPsGCgkstvvkvLskelg 70
                  ++iL i GPsGCgkst ++ L + + 
  CCG92055.1 49 FYQQILAIIGPSGCGKSTFLRCLNRMHE 76
                4578*******************99875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.2e-07    0.0002       4      30 ..      50      76 ..      46     227 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.2e-07
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqld 30
                +++il+++G+sG+GK+t lr l + ++
  CCG92055.1 50 YQQILAIIGPSGCGKSTFLRCLNRMHE 76
                699*******************99985 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     4e-06    0.0036      25      52 ..      52     107 ..      41     237 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekd............................g 52 
                 +++ ++G+sG+GKs+ +r+l r  e +                            +
  CCG92055.1  52 QILAIIGPSGCGKSTFLRCLNRMHELSpgvrvegsvklmgkeiyaadvdptlirrR 107
                 6899****************984444444555444555555444444444444332 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1     8e-06    0.0072      17      40 ..      49      72 ..      35      74 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8e-06
      AAA_23 17 FskgltlItGpNGaGKTTildAik 40
                F + + +I+Gp G+GK+T+l+++ 
  CCG92055.1 49 FYQQILAIIGPSGCGKSTFLRCLN 72
                4677889***************85 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     1e-05    0.0092      97     123 ..      49      75 ..      27      86 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1e-05
                  CTTSEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallpel 123
                  + +++ +++G+SG GKSt++  l+  +
   CCG92055.1  49 FYQQILAIIGPSGCGKSTFLRCLNRMH 75 
                  44699***************9998654 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.5e-05     0.031      22      39 ..      51      68 ..      31      73 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.5e-05
      AAA_29 22 kgatlltGpsGsGKSTll 39
                +++  ++GpsG GKST+l
  CCG92055.1 51 QQILAIIGPSGCGKSTFL 68
                44789***********98 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.2e-05     0.065      19      51 ..      52      85 ..      45      99 .. 0.88
   2 ?   -0.3   0.0      0.84   7.5e+02      87     127 ..     185     229 ..     139     232 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.2e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaa.ggrvig 51
                ++ ++ Gp G GK+t l+ l++++e + g rv g
  CCG92055.1 52 QILAIIGPSGCGKSTFLRCLNRMHELSpGVRVEG 85
                57899********************998877765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.84
      AAA_30  87 epg.tllivDEagmv....dtkqlaallkaaekagakvilvGDerQ 127
                 + + ++l+ DE   +    +t+q+++l+ +++k + +++lv  + Q
  CCG92055.1 185 AVQpEVLLMDEPCSAldpiATAQIEELIVSLKK-NYTIVLVTHNLQ 229
                 334478888887666677789999999999988.888888877666 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00079      0.71       3      19 ..      56      72 ..      54      93 .. 0.84
   2 ?    3.0   0.0      0.15   1.3e+02      49      95 ..     187     234 ..     149     241 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00079
  RNA_helicase  3 lyGpsgeGKStlakeLa 19
                  + Gpsg+GKSt+ + L 
    CCG92055.1 56 IIGPSGCGKSTFLRCLN 72
                  89**********98765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.15
  RNA_helicase  49 gqevvvidDfgqvkdee.npsdlaelirlvsstpyplnmasleekgtl 95 
                   ++ev+++d+ ++  d   + ++++ ++ l +++++ l + +l+e g++
    CCG92055.1 187 QPEVLLMDEPCSALDPIaTAQIEELIVSLKKNYTIVLVTHNLQEAGKT 234
                   788999999999999998888******************999998754 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.5e-05     0.032       3      32 ..      55      87 ..      53     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.5e-05
      AAA_33  3 llvGlpGsGKstlaerllkklg...avllssdt 32
                 ++G++G+GKst+++ l + +    +v+++  +
  CCG92055.1 55 AIIGPSGCGKSTFLRCLNRMHElspGVRVEGSV 87
                589***********9985555444688887666 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   6.7e-05      0.06      80     115 ..      45      79 ..      36      83 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.7e-05
  Adeno_IVa2  80 slnyglqPviGviyGPtGsGksqllrnlissklisP 115
                 s+n+  q ++ +i GP G+Gks +lr l   + +sP
  CCG92055.1  45 SMNIFYQQILAII-GPSGCGKSTFLRCLNRMHELSP 79 
                 7788888888766.************9987777776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.9e-05     0.071       2      25 ..      55      83 ..      54     116 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.9e-05
      AAA_18  2 lltGtpGvGKttlakeLskrlgf.....g 25
                ++ G++G+GK+t+ + L++++++     +
  CCG92055.1 55 AIIGPSGCGKSTFLRCLNRMHELspgvrV 83
                589**************999877774442 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00012      0.11      25      48 ..      53      76 ..      39     126 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
      AAA_15 25 ltvliGkNnsGKSsilealdlFln 48
                +  +iG+ ++GKS++l+ l+ + +
  CCG92055.1 53 ILAIIGPSGCGKSTFLRCLNRMHE 76
                889****************98866 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0    0.0001      0.09       1      38 [.      53      88 ..      53     112 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0001
         PRK  1 vIgvagsSGaGkttvarklekifgrekvkaaeiegdsf 38
                ++++ g+SG+Gk+t+ r l+ + +    + + +eg + 
  CCG92055.1 53 ILAIIGPSGCGKSTFLRCLNRMHE--LSPGVRVEGSVK 88
                679**************9987755..444455665555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00021      0.19       5      25 ..      54      73 ..      51      91 .. 0.86
   2 ?   -2.5   0.0       3.8   3.4e+03      12      19 ..     230     237 ..     207     257 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
      AAA_24  5 iliyGpsgiGKTtlakelgpk 25
                ++i+Gpsg GK+t+++ l ++
  CCG92055.1 54 LAIIGPSGCGKSTFLRCL-NR 73
                79*************988.54 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.8
      AAA_24  12 giGKTtla 19 
                 ++GKT+  
  CCG92055.1 230 EAGKTSDY 237
                 34444444 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015      0.13      26      53 ..      54      83 ..      47     254 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
                EEEEESTTSSHHHHHHHHHHHC..S----H CS
     G-alpha 26 llllGqseSGKsTilkqlklly..kkgfse 53
                l ++G s++GKsT+l+ l +++   +g++ 
  CCG92055.1 54 LAIIGPSGCGKSTFLRCLNRMHelSPGVRV 83
                6789*****************944444444 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0098       8.8      37      61 ..      53      77 ..      45      89 .. 0.86
   2 ?    3.4   0.0     0.049        44      85     158 ..     154     224 ..     145     235 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0098
        TniB 37 nlllvGdsnnGKtmivekFarlhpp 61
                 l ++G+s +GK++ ++   r+h+ 
  CCG92055.1 53 ILAIIGPSGCGKSTFLRCLNRMHEL 77
                578************9999999975 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.049
        TniB  85 rlyaaiLealgaplkararvskleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipiv 158
                 +l++++ ++l+ap  ++ +  ++++ +++   +++++vL++DE  ++l   a++q  + +++ sL+ ++ i +v
  CCG92055.1 154 ALWDEVKDRLEAPG-TSLSGGQQQRLCIARAIAVQPEVLLMDEPCSALDPIATAQ--IEELIVSLKKNYTIVLV 224
                 67777778888884.7777778888888888999*********999886555544..34445555566666555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00047      0.42       3      22 ..      55      74 ..      53      95 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00047
      AAA_28  3 vitGgestGKTtlleaLaar 22
                +i+G++++GK+t l+ L+++
  CCG92055.1 55 AIIGPSGCGKSTFLRCLNRM 74
                79************999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 1932.79
//
Query:       CCG92056.1  [L=384]
Description: Predicted Na+-dependent transporter [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-18   67.4  13.5    1.8e-18   66.9  13.5    1.2  1  SBF_like  SBF-like CPA transporter family (DUF4137)
    6.2e-17   61.9   7.0    6.2e-17   61.9   7.0    1.7  2  SBF       Sodium Bile acid symporter family
  ------ inclusion threshold ------
       0.82    9.1   3.0        0.9    9.0   0.1    2.2  2  DUF3087   Protein of unknown function (DUF3087)


Domain annotation for each model (and alignments):
>> SBF_like  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9  13.5     3e-22   1.8e-18       2     311 ..      22     349 ..      21     351 .. 0.83

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 3e-22
    SBF_like   2 wfllllilvillAslvPvf..........akaggtikaeyvikygValiF...llsGlslsteellanlrnwrlhllvllisflltplivlalvsllka 87 
                 +f+++lil+ +lA l+P++              +++ ++  i++ ++ +F   +  G  ++ ++++++l++    +l ++++f++ p + + l+ l+++
  CCG92056.1  22 KFFFFLILAYVLAALFPETglelrditlfH--WNLLGVREEITFPIFQLFillFNGGFGVKIRDFITQLSKPLPLILGVFFNFIV-PCLFVSLYWLISS 117
                 79****************933333333221..222223333444455555322778****************9999999999986.7777777777774 PP

    SBF_like  88 .aldpe....lliGllllaalPtTvssnvvmtsqAgGnealalceavignllGvfltPalvqlll..sgs.......svsvdyaevlkklllsvllPlv 172
                  +++p+    l +Gl+l+ a+P +  s +   ++++ n +l+l  ++++ +l ++ tP+++q+    +gs       ++s+++   +  l+l +++P +
  CCG92056.1 118 pWHNPKerydLFVGLILIIAMPIA-GSTIGWSQNSNANIPLSLGLVFFSTFLSPLFTPMIFQAAKflGGSyepelfgHISHQINSQF--LILDIVIPSF 213
                 4777777999************97.899**********************************9776544456666667777777776..99******** PP

    SBF_like 173 vGqvlqkifpkl.vkrlkkllkkvdslvlllivytsfstafaqgaftsvshiillvifnvallLllvvlvillllarllklskedeiavlfcgsaKsla 270
                 +G+ ++ i +++ ++++ +l+k ++++ ll+++y+  +ta    ++++ ++  +l+i +v +lL l+ + +  ++ +l+++ ++ + +++++       
  CCG92056.1 214 LGMFARLISGNVlYEKVIRLIKPLNEINLLVLIYSNAATA-LPFIIHKPDTDFFLLIGIVVFLLCLIRFHAGQWIGSLFHFGEPTKRSLIYALGMNNNG 311
                 ********986505558999*******************9.5678888899999999999999999999999*************************** PP

    SBF_like 271 lgvplisvlfgsnpqlgllllPlllyhliqlvvaavlvsrl 311
                 +g+ l + + g++     ++lP++ly l+q ++aa++ s +
  CCG92056.1 312 MGLVLSNAVVGNQ---PSIILPIILYNLFQQIMAAAFYSSW 349
                 **********986...69***********988888776655 PP

>> SBF  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   7.0     1e-20   6.2e-17       3     193 ..      67     258 ..      65     260 .. 0.85
   2 ?   -2.3   0.1       0.5     3e+03      77     107 ..     312     342 ..     298     356 .. 0.65

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 1e-20
         SBF   3 lLilmmfpmglkveveklkellkrpkalllglvlqwvikPllmfilakillrdl...klepelavGlilvglapggamsnvwtylakGdlelsvvlval 98 
                  L++++f  g  v+++++ + l++p +l+lg++ ++++ P l + l +++ +     k    l vGlil+ ++p + + + w++ ++ + +ls++lv++
  CCG92056.1  67 QLFILLFNGGFGVKIRDFITQLSKPLPLILGVFFNFIV-PCLFVSLYWLISSPWhnpKERYDLFVGLILIIAMPIAGSTIGWSQNSNANIPLSLGLVFF 164
                 69**********************************99.*********7766654444555699*********************************** PP

         SBF  99 stllailltPl...llyllaksl.eqttlkvpieeivksvlivviiPliaGillryillkhkGrewfeskllpavspisligllltivvifalkgeliv 193
                 st+l++l+tP+    +++l +s+  +   +++ +   +++++ ++iP  +G+  r+i+ ++     + +k++++++p+  i ll++i+ ++a +   i+
  CCG92056.1 165 STFLSPLFTPMifqAAKFLGGSYePELFGHISHQINSQFLILDIVIPSFLGMFARLISGNV-----LYEKVIRLIKPLNEINLLVLIYSNAATALPFII 258
                 ***********666667777777634444555554555666779*************9994.....7789******************99988776665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.5
         SBF  77 msnvwtylakGdlelsvvlvalstllaillt 107
                 m +v+++ + G+++  +  ++l  l++ ++ 
  CCG92056.1 312 MGLVLSNAVVGNQPSIILPIILYNLFQQIMA 342
                 5556666666666666665555555555554 PP

>> DUF3087  Protein of unknown function (DUF3087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00015       0.9      31      56 ..      27      57 ..      17      70 .. 0.89
   2 ?   -0.4   0.5      0.12   6.9e+02      19      63 ..     269     321 ..     265     355 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00015
     DUF3087 31 llfstllialfgeeevs.....nfhlnllGv 56
                l+++ +l alf+e++ +      fh+nllGv
  CCG92056.1 27 LILAYVLAALFPETGLElrditLFHWNLLGV 57
                78999*******9999999999********9 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.12
     DUF3087  19 ivalvallavlsllfstllialfgeeevs........nfhlnllGvvlalvlt 63 
                 i ++v ll ++ +  ++ + +lf  +e +         ++ n +G vl+ +++
  CCG92056.1 269 IGIVVFLLCLIRFHAGQWIGSLFHFGEPTkrsliyalGMNNNGMGLVLSNAVV 321
                 56677888888899999999998865555567777776667777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2658.76
//
Query:       CCG92057.1  [L=253]
Description: Succinate dehydrogenase catalytic subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-22   78.9   1.4    3.8e-22   78.4   0.0    1.9  2  Fer2_3    2Fe-2S iron-sulfur cluster binding domain
    4.8e-09   36.5   2.5    4.8e-09   36.5   2.5    1.9  2  Fer4_8    4Fe-4S dicluster domain
    1.7e-08   34.9   3.3    1.7e-08   34.9   3.3    1.9  2  Fer4_7    4Fe-4S dicluster domain
      9e-06   25.6   2.1    0.00012   22.0   0.1    2.5  2  Fer2      2Fe-2S iron-sulfur cluster binding domain
    2.7e-05   24.2   6.3    2.7e-05   24.2   6.3    2.2  2  Fer4_10   4Fe-4S dicluster domain
    4.4e-05   23.6  17.6     0.0011   19.1   7.5    2.8  3  Fer4_9    4Fe-4S dicluster domain
     0.0001   21.9   3.2     0.0001   21.9   3.2    3.0  3  Fer4      4Fe-4S binding domain
    0.00011   22.4   1.8       0.19   11.9   0.1    2.4  2  Fer4_18   4Fe-4S dicluster domain
    0.00018   22.0   4.4    0.00018   22.0   4.4    2.3  3  Fer4_17   4Fe-4S dicluster domain
    0.00024   21.0   2.8    0.00024   21.0   2.8    3.3  3  Fer4_2    4Fe-4S binding domain
    0.00079   19.4   2.3    0.00079   19.4   2.3    2.8  2  Fer4_6    4Fe-4S binding domain
     0.0023   18.3   1.1     0.0023   18.3   1.1    3.0  3  Fer4_4    4Fe-4S binding domain
  ------ inclusion threshold ------
      0.019   15.7   3.0      0.034   14.9   0.1    2.3  2  Fer4_15   4Fe-4S single cluster domain
      0.027   15.3   0.5      0.027   15.3   0.5    2.5  2  Fer4_22   4Fe-4S dicluster domain
      0.047   14.6   4.6      0.047   14.6   4.6    3.0  2  Fer4_3    4Fe-4S binding domain
       0.35   11.0  15.3      0.033   14.3   8.4    2.4  1  Fer4_21   4Fe-4S dicluster domain
        3.2    8.8  15.2       0.34   11.9   8.8    2.4  2  Fer4_16   4Fe-4S double cluster binding domain


Domain annotation for each model (and alignments):
>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   3.6e-25   3.8e-22       2     107 ..       5     120 ..       4     122 .. 0.93
   2 ?   -2.1   0.0       3.7   3.9e+03      28      54 ..     196     222 ..     192     228 .. 0.75

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 3.6e-25
      Fer2_3   2 lkvkRfdprrdrgkqkvqeyeveae.eedtvldaLlkikeev....dptlafrasCregiCGscavainGkp......tlaCtatikdlakqkseiele 89 
                 lk++R++    ++k  +  y ++   +++++l++L+ ++e++    ++++af+++CregiCGsc+++inGkp       + C+  ++++++++ ei +e
  CCG92057.1   5 LKIWRQSS--RAAKGDFVFYALDGLnPNMSFLEMLDFLNEKLisegQEPIAFDSDCREGICGSCSLMINGKPhgpgfgITTCQLYMRQFKDDQ-EIIVE 100
                 89*****9..456899*******988***************99999**************************99999999*********9876.7**** PP

      Fer2_3  90 pl..pkfpvirDLvvDidem 107
                 p+  ++fpvi+DL+vD++++
  CCG92057.1 101 PFrsRAFPVIKDLIVDRSAL 120
                 **8889**********9975 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.7
      Fer2_3  28 edtvldaLlkikeevdptlafrasCre 54 
                 ++ vl+++ +  +e     +f + C++
  CCG92057.1 196 RKRVLQMVRQADKEGFGACSFTKACEA 222
                 567888888888888888888888864 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       2.2   2.3e+03       8      16 ..      63      85 ..      57      98 .. 0.61
   2 !   36.5   2.5   4.6e-12   4.8e-09       2      65 .]     156     228 ..     155     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.2
      Fer4_8  8 CgaCq..............saCp 16
                Cg C               ++C 
  CCG92057.1 63 CGSCSlmingkphgpgfgiTTCQ 85
                66666555555555555555555 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 4.6e-12
      Fer4_8   2 lekCieCgaCqsaCp.......vlrrtkkhlldargeaaedvqeeqvlee..eealwsCttcgaCtevCpvgi 65 
                 + +Ci+CgaC + C        v  + ++ +l ++g+ + +++  q++ +  +e++++C+ ++aC+ vCp+ i
  CCG92057.1 156 AAHCIGCGACVAVCKnssaslfVGAKIAHLSLLPQGQPERRKRVLQMVRQadKEGFGACSFTKACEAVCPKAI 228
                 679***********655555544444556667777776664444444444569*****************976 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2         7   7.4e+03      41      44 ..      63      66 ..      45      68 .. 0.69
   2 !   34.9   3.3   1.6e-11   1.7e-08       1      51 [.     158     227 ..     158     228 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7
      Fer4_7 41 CgaC 44
                Cg+C
  CCG92057.1 63 CGSC 66
                5555 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 1.6e-11
      Fer4_7   1 rCigCgaCvaaCpvkaield..............eeenekgtekveidpek.....ClgCgaCvavCPtg 51 
                 +CigCgaCva+C+++  +l               + e+ k++ +++ +++k     C++++aC+avCP+ 
  CCG92057.1 158 HCIGCGACVAVCKNSSASLFvgakiahlsllpqgQPERRKRVLQMVRQADKegfgaCSFTKACEAVCPKA 227
                 6***********87777766445555554543221222222223333333344555************86 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   1.1e-07   0.00012      26      77 ..      49      88 ..      40      89 .. 0.88
   2 ?    2.6   0.3      0.13   1.4e+02      38      48 ..     160     170 ..     131     182 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.1e-07
                TTTTTSTTSSSSSSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGGGSEE CS
        Fer2 26 nggidipysCggggCgtClvevlegevqsdetelegeeldegklrlaCqtiv 77
                ++ i++  +C++g Cg+C  +++            g++   g+ +++Cq ++
  CCG92057.1 49 QEPIAFDSDCREGICGSCSLMIN------------GKPHGPGFGITTCQLYM 88
                45899****************99............99999999******998 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.13
                 SSSSTTEEEEE CS
        Fer2  38 ggCgtClvevl 48 
                  gCg+C++ ++
  CCG92057.1 160 IGCGACVAVCK 170
                 57****98765 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       2.3   2.5e+03      45      51 ..      58      66 ..      42      69 .. 0.60
   2 !   24.2   6.3   2.6e-08   2.7e-05       4      56 .]     154     225 ..     151     225 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.3
     Fer4_10 45 Ctg..cgaC 51
                C +  cg+C
  CCG92057.1 58 CREgiCGSC 66
                443444444 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 2.6e-08
     Fer4_10   4 idddtCirCgkCvkaCPadl.....................tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 +d+  Ci+Cg+Cv++C  ++                      + +++  ++  +a++++ ++C +  aC ++CP
  CCG92057.1 154 FDAAHCIGCGACVAVC--KNssaslfvgakiahlsllpqgqPERRKRVLQMVRQADKEGFGACSFTKACEAVCP 225
                 68899***********..7789****************99877888899999999999***************9 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.6   1.7e+03      35      42 ..      57      66 ..      37      69 .. 0.67
   2 !   17.2   2.4   3.9e-06    0.0041      29      48 ..     152     171 ..     131     175 .. 0.71
   3 !   19.1   7.5     1e-06    0.0011       2      49 ..     159     227 ..     158     229 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.6
      Fer4_9 35 aCig..CgaC 42
                +C +  Cg+C
  CCG92057.1 57 DCREgiCGSC 66
                4544457777 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 3.9e-06
      Fer4_9  29 raaseeaCigCgaCveaCpk 48 
                 +a+++  CigCgaCv++C++
  CCG92057.1 152 KAFDAAHCIGCGACVAVCKN 171
                 2333368***********87 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 1e-06
      Fer4_9   2 CtgCgaCveaC...................pagvvvedaaerkarlraase............eaCigCgaCveaCpkg 49 
                 C+gCgaCv++C                   p+g  ++++                         aC + +aC+++Cpk 
  CCG92057.1 159 CIGCGACVAVCknssaslfvgakiahlsllPQGQPERRKR----------VlqmvrqadkegfGACSFTKACEAVCPKA 227
                 ***********77777777766666655554444444444..........044444455569999************97 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.4       2.2   2.3e+03      11      14 ..      63      66 ..      62      68 .. 0.86
   2 !   21.9   3.2   9.8e-08    0.0001       3      18 ..     154     169 ..     152     172 .. 0.89
   3 ?    4.4   1.3     0.035        37      13      20 ..     219     226 ..     212     228 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.2
                -THH CS
        Fer4 11 CGaC 14
                CG C
  CCG92057.1 63 CGSC 66
                9999 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 9.8e-08
                 EETTTSSS-THHHHHS CS
        Fer4   3 ideekCigCGaCvevC 18 
                 +d   CigCGaCv vC
  CCG92057.1 154 FDAAHCIGCGACVAVC 169
                 68899*********** PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.035
                 HHHHHSTT CS
        Fer4  13 aCvevCPv 20 
                 aC+ vCP 
  CCG92057.1 219 ACEAVCPK 226
                 8******5 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   0.00018      0.19      53      72 ..     151     170 ..     121     176 .. 0.79
   2 !    9.6   0.1   0.00096         1      42      77 ..     195     230 ..     189     236 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
     Fer4_18  53 rkekgagdcidcescvkvcP 72 
                 +k+ +a++ci c++cv+vc 
  CCG92057.1 151 EKAFDAAHCIGCGACVAVCK 170
                 34567899***********6 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00096
     Fer4_18  42 kekkalkekeerkekgagdcidcescvkvcPtgidi 77 
                 ++k++l+ + +  ++g g c   ++c +vcP  i +
  CCG92057.1 195 RRKRVLQMVRQADKEGFGACSFTKACEAVCPKAISV 230
                 556667777788899****************99976 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       5.1   5.4e+03       8      13 ..      63      67 ..      57      99 .. 0.62
   2 !   12.1   1.8   0.00021      0.22      41      58 ..     154     171 ..     136     174 .. 0.75
   3 !   22.0   4.4   1.7e-07   0.00018       2      60 ..     159     228 ..     158     229 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 5.1
     Fer4_17  8 ClpeCp 13
                C   C+
  CCG92057.1 63 CGS-CS 67
                333.33 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00021
     Fer4_17  41 ekaslCieCgeCerkCPq 58 
                   a  Ci+Cg C+++C +
  CCG92057.1 154 FDAAHCIGCGACVAVCKN 171
                 578889999999999975 PP

  == domain 3  score: 22.0 bits;  conditional E-value: 1.7e-07
     Fer4_17   2 CiqCgyClpeCpsyea...........ydnepkkllraaklglleeaekeekaslCieCgeCerkCPqgl 60 
                 Ci+Cg+C+++C    a               + ++ r+ ++ ++ ++ ++e ++ C+  + Ce++CP+ +
  CCG92057.1 159 CIGCGACVAVCKNSSAslfvgakiahlSLLPQGQPERRKRVLQMVRQADKEGFGACSFTKACEAVCPKAI 228
                 ************866633333333322222344555555553344445779****************976 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.5     0.012        12       1      16 [.      50      66 ..      50      68 .. 0.87
   2 !   21.0   2.8   2.2e-07   0.00024       4      21 ..     153     170 ..     150     171 .. 0.90
   3 ?    2.5   1.6      0.17   1.8e+02      13      21 ..     214     225 ..     212     226 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.012
      Fer4_2  1 apvvvdtdrCig..CgaC 16
                +p+++d+d C +  Cg+C
  CCG92057.1 50 EPIAFDSD-CREgiCGSC 66
                5899****.*988***** PP

  == domain 2  score: 21.0 bits;  conditional E-value: 2.2e-07
      Fer4_2   4 vvdtdrCigCgaCvsaCP 21 
                 ++d+++CigCgaCv +C 
  CCG92057.1 153 AFDAAHCIGCGACVAVCK 170
                 699**************5 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.17
      Fer4_2  13 Cg...aCvsaCP 21 
                 C+   aC  +CP
  CCG92057.1 214 CSftkACEAVCP 225
                 755559*****9 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   2.3   7.5e-07   0.00079       4      20 ..     154     170 ..     153     175 .. 0.89
   2 ?    5.5   0.4     0.019        20      14      21 ..     219     226 ..     217     233 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.5e-07
      Fer4_6   4 idpdkCigCgdCvrvCP 20 
                 +d+  CigCg+Cv+vC 
  CCG92057.1 154 FDAAHCIGCGACVAVCK 170
                 88888***********5 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.019
      Fer4_6  14 dCvrvCPe 21 
                 +C++vCP 
  CCG92057.1 219 ACEAVCPK 226
                 6******5 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.1       7.5   7.9e+03       7      10 ..      63      66 ..      63      67 .. 0.93
   2 !   18.3   1.1   2.2e-06    0.0023       4      15 ..     159     170 ..     151     179 .. 0.91
   3 ?    6.2   0.5     0.016        17       8      15 ..     218     225 ..     213     237 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 7.5
      Fer4_4  7 CgsC 10
                CgsC
  CCG92057.1 63 CGSC 66
                9**9 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 2.2e-06
      Fer4_4   4 CigCgsCvaaCP 15 
                 CigCg+Cva+C+
  CCG92057.1 159 CIGCGACVAVCK 170
                 ***********7 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.016
      Fer4_4   8 gsCvaaCP 15 
                 ++C+a+CP
  CCG92057.1 218 KACEAVCP 225
                 68****** PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   3.3e-05     0.034       3      20 ..     154     171 ..     153     204 .. 0.85
   2 ?    0.5   0.6         1   1.1e+03       7      22 ..     213     228 ..     212     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.3e-05
     Fer4_15   3 vDrdaCigcglCvaeape 20 
                 +D   Cigcg+Cva++++
  CCG92057.1 154 FDAAHCIGCGACVAVCKN 171
                 79999***********64 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1
     Fer4_15   7 aCigcglCvaeapevf 22 
                 aC    +C a++p+ +
  CCG92057.1 213 ACSFTKACEAVCPKAI 228
                 699999******9987 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.5   2.6e-05     0.027      73      94 ..     150     171 ..     139     173 .. 0.85
   2 ?    2.2   0.1      0.31   3.2e+02       2      16 ..     214     228 ..     189     244 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.6e-05
     Fer4_22  73 fkekfgesgCvGCgRCieacpv 94 
                  ++ f++ +C+GCg C+++c++
  CCG92057.1 150 AEKAFDAAHCIGCGACVAVCKN 171
                 567899**************86 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.31
     Fer4_22   2 ClsCgaCtlvCptCs 16 
                 C    aC +vCp  +
  CCG92057.1 214 CSFTKACEAVCPKAI 228
                 333445566665544 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   4.6   4.4e-05     0.047       1      12 [.     159     170 ..     159     174 .. 0.91
   2 ?    8.5   1.0    0.0042       4.4       4      13 ..     214     226 ..     212     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.4e-05
      Fer4_3   1 CtgCgaCvevCP 12 
                 C+gCgaCv vC 
  CCG92057.1 159 CIGCGACVAVCK 170
                 ***********6 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0042
      Fer4_3   4 Cg...aCvevCPv 13 
                 C+   aC+ vCP+
  CCG92057.1 214 CSftkACEAVCPK 226
                 666669******7 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   8.4   3.2e-05     0.033       3      52 ..     154     225 ..     152     232 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.2e-05
     Fer4_21   3 idedkCigCgkCliaCedtshqai............eidaktvl.............kvved...eCvGCnlCssvCP 52 
                 +d ++CigCg C+ +C+++s                +                    +  ++    C   + C +vCP
  CCG92057.1 154 FDAAHCIGCGACVAVCKNSSASLFvgakiahlsllpQ------GqperrkrvlqmvrQADKEgfgACSFTKACEAVCP 225
                 58899************99988875555555555552......03333334444332222332224555677888888 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.9   0.00053      0.55      46      64 ..     151     169 ..     136     172 .. 0.71
   2 ?   11.9   8.8   0.00033      0.34       1      65 [.     158     225 ..     158     227 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00053
     Fer4_16  46 ekckkqeaitgCdiCqdvC 64 
                 ek   + +++gC++C++vC
  CCG92057.1 151 EKAFDAAHCIGCGACVAVC 169
                 3444566888999999998 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00033
     Fer4_16   1 rCgtCgkCaevCPtnaikekkekeiearecisy..ntaekkdlaedeekckkq.eaitgCdiCqdvCP 65 
                 +C++Cg+C+ vC  +  +    ++i+      +   ++ k+ l+  ++++k++ +a+ + ++C++vCP
  CCG92057.1 158 HCIGCGACVAVCKNSSASLFVGAKIAHLSLLPQgqPERRKRVLQMVRQADKEGfGACSFTKACEAVCP 225
                 7*************99998877777766655553233444556655555554348889999******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1672.18
//
Query:       CCG92058.1  [L=651]
Description: Succinate dehydrogenase flavoprotein subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-51  173.6   0.0    8.3e-51  173.4   0.0    1.1  1  FAD_binding_2   FAD binding domain
    1.5e-34  118.7   0.0    2.3e-34  118.2   0.0    1.3  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
    0.00023   20.9   2.6     0.0063   16.1   2.0    2.7  2  DAO             FAD dependent oxidoreductase
    0.00037   19.8   1.5      0.013   14.8   1.3    2.9  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      0.002   17.3   2.2      0.026   13.6   0.6    2.3  2  GIDA            Glucose inhibited division protein A
  ------ inclusion threshold ------
      0.011   16.0   0.4      0.034   14.4   0.4    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
       0.15   11.3   0.0       0.26   10.6   0.0    1.3  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.4   0.0   3.2e-54   8.3e-51       2     417 .]      50     455 ..      49     455 .. 0.90

  Alignments for each domain:
  == domain 1  score: 173.4 bits;  conditional E-value: 3.2e-54
                    EEEE--SHHHHHHHHHHHHTTT-E..EEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHH CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkv..avvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavde 95 
                    +iV+G+GlAG aAA ++ e G +v   ++   ++ + +++++qGgi+a+ +  +    ++ds+   +++t+k++d +a ++ v  ++e + + +d 
     CCG92058.1  50 IIVVGTGLAGSAAASALGELGYNVesFCIQDSPR-RAHSVAAQGGINAAKNYRN----DGDSVYRLFYETIKGGDFRAREANVYRLAEISTKIIDH 140
                    79********************774366766665.***************4444....569*********************************** PP

                    HHHTT----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHH.HTCT...EEEEESEEEEEEEECTTEEEEEEEEETTTTCE CS
  FAD_binding_2  96 LeelgvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlvesa.rkag...vdfqerteadeLivedgrvtGavvenpesgre 187
                      +lgvpf r+ +g ++ r +Gg++   rt + +++       tg++ll + + ++ r+ +   v +++rte+++++  dg++ G++++++ sg++
     CCG92058.1 141 CVALGVPFAREYGGMLANRSFGGVQVS-RTFYARGA-------TGQQLLLATYGALcRQIAlgkVVVHPRTEILDIVLVDGHAKGVIARDLVSGEI 228
                    **********9999*************.****6666.......899999999988843333779******************************** PP

                    EEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTB..B--THHHHTT-EEE-.. CS
  FAD_binding_2 188 vrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgi..LitealrgeGgilvd.. 279
                     ++ a+avvlatgG+g+           +  +tn  +   +++  a+  gaa ++  + + q+hPt+++  +d +    L++e lr++G i+v   
     CCG92058.1 229 SAYSADAVVLATGGYGN----------IYYLSTNGRGSNATAIWRAFKRGAAFAN--PCFTQIHPTCIPVSGDYQSKltLMSESLRNDGRIWVPsr 312
                    *****************..........*************************999..***********97776555469**************976 PP

                    TTSSBTH...................GGGS-HHHHHHHHH.HHHHTTTS...CCBEEEE-TT.SSHHHHHHHSHHHHHHHHHCCT......S-TTT CS
  FAD_binding_2 280 kdGrrFm...................nelasrdvvsrailekeiaeggs...eanvyldashgldaegleatleaineeaangldkdfgrgidpad 353
                    kd +r +                   ++l +rd+ srai +   ++ g    ++ vyld+s+ +++ g++   e++   ++   d +   g ++++
     CCG92058.1 313 KDDKRSPeiipeserdyflerlypayGNLVPRDIASRAIKRICDEGRGVgpgGQGVYLDFSDTIKQRGIDYLKERYGNLFDIYRDIT---GENAYR 405
                    7778877********************************96666655559999*********9999999999999999999988844...566666 PP

                    SEEE.......EEEEEEEES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 354 rpipgpfyavkvvpaqhytmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                     p+        ++pa+hy mgG+ +d+ +        +ipGL+  Ge+   + hganrlg++ l
     CCG92058.1 406 TPMR-------IYPAVHYVMGGLWVDYYLMS------TIPGLFVLGEAN-FSDHGANRLGASAL 455
                    6666.......********************......************.999*******9765 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.0   8.9e-38   2.3e-34       1     128 []     516     650 ..     516     650 .. 0.99

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 8.9e-38
                     .HHHHHHHHHHSSSSB-HHHHHHHHHHHHHHHHH.HTTB--S---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH--S-BTTBEBTTS-S...... CS
  Succ_DH_flav_C   1 rkeLgkimqkkvgvfRteegLkealkelkelrer.lknvkvtdkskvaNqelvealelanllelAeaiaksAlaRkESrGaHaredfpe...... 88 
                     +keLg+i+++++g+ R+++gLkeal+++ elre+ +k+v+v + ++ +Nq+l+ a +l+++lelAe+++ +A  R+ES+G+H+re++++      
      CCG92058.1 516 HKELGAILWNRCGMIRNGSGLKEALSQIIELREQfWKDVNVGGANEGLNQSLEYASRLTDYLELAELMCMDAASREESCGCHFREEYQTpegegi 610
                     89*************************************************************************************9999**** PP

                     EETTT-SEEEEE...TT-SS-EEEEEE--GGG--S---SS CS
  Succ_DH_flav_C  89 rdDenwlkhtlasldaakeeveleyepveletlkpkeRsY 128
                     r+D+++++++++ ++ +++++ l  ep+ +e+ + + RsY
      CCG92058.1 611 RNDKDFAYVSVWFYRGKENTPLLVKEPLVYEETQFAIRSY 650
                     ***************************************9 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   2.0   2.5e-06    0.0063       2     296 ..      50     338 ..      49     374 .. 0.59
   2 ?   -2.6   0.0       1.2   3.1e+03      43     102 ..     489     543 ..     479     567 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.5e-06
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHH CS
         DAO   2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeelea 98 
                 ++++G G +G+++A +L + g  V  ++ +d + ++ S +++g + ++  y  ++  ++rl +e+++         g d+  r+  ++ la+       
  CCG92058.1  50 IIVVGTGLAGSAAASALGELGynVESFCIQDSPRRAHSVAAQGGINAAKNYRNDGDSVYRLFYETIK---------GGDFRAREANVYRLAE----I-- 133
                 99***************99999999999999999999********9977655556444455555543.........3356667778888983....2.. PP

                 HHHHHHHHHHTTTTE.EEEEHHHHHHHSTTSTTTS.EEEEETTEEEEEHHHHHHH..HHHHHHHTT-EEEESECEEEEEEEETCEEEEE..EECTEEEE CS
         DAO  99 ldkllallleaglda.elldaeevrelepalpgll.galfypdtgqvdpakltaa..laraaealGveilegtevtgleeedgkvwgve..rttpgend 191
                 + k ++ + ++g++  +   + ++++ +    g++    fy  +++ +   l+ +  l r+++ + v ++ +te+ ++   dg ++gv   +  +ge++
  CCG92058.1 134 STKIIDHCVALGVPFaREYGGMLANRSFG---GVQvSRTFYARGATGQQLLLATYgaLCRQIALGKVVVHPRTEILDIVLVDGHAKGVIarDLVSGEIS 229
                 22555666557777644566666777776...4443556777755533332222233566666566************999999999999633346663 PP

                 ..EEEEEEE--GGGHH...HH.HTTCTT..TSEE.EEEEEEEEEEEECCTHSTGSGCSEEEEE...EEETTTTEEEEE..ETTSEEEEEESSEEETTCS CS
         DAO 192 ..aadavVnaaGawsd...ll.gllkel..dlpi.spvrgqvlvlkplseklvspaailpvpe...tdddgrgvyvtp..rkdgrvlvGgtadeesgdd 276
                   +adavV+a+G + +   l+ ++         i ++++      +p         +i p+ +    d +++ + +    r dgr++v +    +++  
  CCG92058.1 230 aySADAVVLATGGYGNiyyLStNGR--GsnATAIwRAFKRGAAFANPCFT------QIHPTCIpvsGDYQSKLTLMSEslRNDGRIWVPSRK--DDKRS 318
                 357899********76543222111..11111221333333333334433......222222222123333332222233367777775543..34444 PP

                 STSCSHHHHHHHHHHHHHHS CS
         DAO 277 dpevdeedidellealrklf 296
                 +  ++e ++d++le+l   +
  CCG92058.1 319 PEIIPESERDYFLERLYPAY 338
                 44555556666555554444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
                 EEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHHHHH CS
         DAO  43 llhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeelealdkl 102
                 +++++ +  +++  +  ls ++ +   ++ +elg  i + r+G++  +++   +eal + 
  CCG92058.1 489 FIAQQKEAVEKN--KKLLSIQGKKTVSQFHKELGA-ILWNRCGMIRNGSG--LKEALSQI 543
                 555555444444..336888888888888888885.99999999887654..34555444 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.3     5e-06     0.013       1     123 [.      48     258 ..      48     273 .. 0.70
   2 ?   -0.3   0.0      0.19     5e+02     256     278 ..     419     441 ..     416     458 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5e-06
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEE..E..TTHCHHHCSHHHHCHHHHHHHHHHHHH..................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x..xxxxxxxxxxxxxxxxxxxxxxxxxxx..................................... RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlv..e..legtclnggcllskallgvaedaeias..................................... 57 
                  ++++v+G G AG aaa  l++ g++v  +      ++++        +a+ +++ d++ +                                      
   CCG92058.1  48 YRIIVVGTGLAGSAAASALGELGYNVESFciQdsPRRAHSVAAQGGINAAKNYRNDGDSVYrlfyetikggdfrareanvyrlaeistkiidhcvalg 145
                  689******************77777665443442222222222223445555555544446667777777777788889999999999999999999 PP

                  ............................................HHHHCHHHH.CCCCHCCTCEEEE...ESCEEEEETEEECTCEEEEEESEEEE-- CS
                  ............................................xxxxxxxxx.xxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ............................................evvkklnqg.ielllgeevvkid...pgkkkvklekkkegdeekiaydklvlAt 107
                                                              +   ++  g + +  ++e+++i      +k v  +++++g+   + +d++vlAt
   CCG92058.1 146 vpfareyggmlanrsfggvqvsrtfyargatgqqlllatygalcR---QIALGkVVVHPRTEILDIVlvdGHAKGVIARDLVSGEISAYSADAVVLAT 240
                  999999999999999999999999999999999999998885551...4444434444444455544331445777777888899999999******* PP

                  -EEE-BC..TCTTC.TTB CS
                  xxxxxxx..xxxxxxxxx RF
  Pyr_redox_2 108 Gssprdl..gipGvaenv 123
                  G+  ++    + G + n+
   CCG92058.1 241 GGYGNIYylSTNGRGSNA 258
                  987666544555665555 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.19
                  TEEE--TTSBESSTTEEE-GGGC CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 256 ggivvdeflrtnvpgiyaiGDva 278
                  gg+ vd +l +++pg++++G   
   CCG92058.1 419 GGLWVDYYLMSTIPGLFVLGEAN 441
                  7888****************876 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.6     1e-05     0.026       2      26 ..      50      74 ..      49     100 .. 0.87
   2 ?    2.6   0.0     0.022        56     119     153 ..     206     245 ..     196     261 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1e-05
                EEEE-SSHHHHHHHHHHHHTT--EE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvl 26
                +iV+G G+AG++AA a+ +lG++v 
  CCG92058.1 50 IIVVGTGLAGSAAASALGELGYNVE 74
                89********************997 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.022
                 EEEEECTTEEEEEEETT.....S-EEEECEEEE--TT-BT CS
        GIDA 119 eeliveekkvkgvvted.....getikakavviatGtflk 153
                  ++++ +++ kgv+ +d      ++++a+avv+atG + +
  CCG92058.1 206 LDIVLVDGHAKGVIARDlvsgeISAYSADAVVLATGGYGN 245
                 55555566666655443111115689999*******9765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.4   1.3e-05     0.034       1      25 [.      52      76 ..      52      98 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlll 25
                   +vG+Gl+G++aA++L + g++v+ +
     CCG92058.1 52 VVGTGLAGSAAASALGELGYNVESF 76
                   8*****************9999765 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0001      0.26      30      61 ..      49      80 ..      37     107 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0001
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrp 61
                 +++v+G G aG +A+++  +lg +V+ + ++ 
   CCG92058.1 49 RIIVVGTGLAGSAAASALGELGYNVESFCIQD 80
                 899**********************9875554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 4329.36
//
Query:       CCG92059.1  [L=229]
Description: Succinate dehydrogenase cytochrome b subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-05   22.9  18.0    0.00073   19.6   4.7    2.5  2  Sdh_cyt   Succinate dehydrogenase/Fumarate reductase transmem
  ------ inclusion threshold ------
       0.28   11.0   0.0       0.28   11.0   0.0    2.5  4  LapA_dom  Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   4.0   5.6e-05       0.5      28      89 ..      20      81 ..      16      92 .. 0.68
   2 !   19.6   4.7   8.2e-08   0.00073      16     116 ..      98     211 ..      83     219 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.6e-05
     Sdh_cyt 28 itGvallvglllllv...wlllalslsspesfarvvallas...piklilllllllallyHllnGiRh 89
                i+G++l++ +l++++   w ++++    p  ++ ++  l+s   + +++  l ll al+ H++  iR+
  CCG92059.1 20 ISGLVLFL-FLIVHMlgnWQVFLP----PYYMNVYAYYLKSnpvVLWSVR-LFLLGALIVHVSTAIRL 81
                8*******.555555225544444....4433333333333444889999.777888888******97 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 8.2e-08
     Sdh_cyt  16 lplgawlsilhritGvallv.glllllv.............wlllalsls.spesfarvvallas.piklilllllllallyHllnGiRhllwDlglgl 98 
                 ++ +++ s ++ ++G+++lv +l++l++             + l+ ls    p++  +v+ ++++ +++l++ +  l +l+ Hl + + ++l  lg+  
  CCG92059.1  98 PNQASFESRTMIFSGLIVLVfILFHLYHfsfkgppfgffknF-LFPLSKQmIPDVRTMVIVGFQNpWVTLFY-VFSLSVLFLHLRHALESFLNSLGFV- 193
                 45788899************9999999988888887777642.33333332666777779999996666777.555555555********99976663. PP

     Sdh_cyt  99 elesarksalavlalava 116
                 + +s    ++++ a+a++
  CCG92059.1 194 NSKSLPWEKIVAHAFALI 211
                 333333333333344444 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   1.8       1.1     1e+04      30      39 ..      21      30 ..      12      37 .. 0.50
   2 ?   11.0   0.0   3.1e-05      0.28      17      50 ..      56      89 ..      47      94 .. 0.89
   3 ?   -4.1   0.8       1.6   1.5e+04      23      27 ..     114     118 ..     108     123 .. 0.44
   4 ?   -4.1   0.4       1.6   1.5e+04      28      35 ..     213     220 ..     209     226 .. 0.56

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.1
    LapA_dom 30 Gallgwllsl 39
                  l+ +l+ +
  CCG92059.1 21 SGLVLFLFLI 30
                3333333333 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 3.1e-05
    LapA_dom 17 lpLsllllvafgiGallgwllslwsylrlrrelr 50
                 p++l+ +  f++Gal++ + ++++ ++ +re+r
  CCG92059.1 56 NPVVLWSVRLFLLGALIVHVSTAIRLWKINREAR 89
                59999999***********************998 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 1.6
    LapA_dom  23 llvaf 27 
                 ++++f
  CCG92059.1 114 IVLVF 118
                 22222 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 1.6
    LapA_dom  28 giGallgw 35 
                  +G+l++ 
  CCG92059.1 213 YVGFLIIP 220
                 46666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1642.63
//
Query:       CCG92060.1  [L=242]
Description: HAD superfamily hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-11   44.9   0.0    3.6e-11   43.5   0.0    1.6  1  HAD_2      Haloacid dehalogenase-like hydrolase
    0.00019   21.8   0.0      0.001   19.4   0.0    1.9  1  Hydrolase  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0     4e-15   3.6e-11       1     162 [.      26     209 ..      26     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 4e-15
       HAD_2   1 iiFDlDgTlldteeliiqafnelleey........................glselseeelrkliglslrellrklgeseeeeekieellrkyneekkk 75 
                 i+FDl gTll t   +  ++ +ll+ey                        + s +++ + +++ +   + +l+++g+    +  ++ + + y    +k
  CCG92060.1  26 IVFDLVGTLLQTALPVGVVYSKLLAEYgirsdpkvmhdnfikvfdffklrpQGSIPKDGDDKRFWEKIVKTVLQESGIPLG-SFFFDYFNKLYSYYSQK 123
                 89*************************888777777777777776666655333444445555555555555555555433.33555555555555666 PP

       HAD_2  76 kevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsp 162
                 +  kpy++v+++L ++++ g+ l ++++  ++ ++  l++ gi +yF  i  s + +  KP++  ++ +l k+  +++ v++v+D p
  CCG92060.1 124 EAWKPYPEVISALGKMSSLGFPLFVASN-WDSRARTVLREWGIRQYFLDIFLSAEWGVAKPEALFYHLVLLKTTKESSAVFFVEDDP 209
                 788*********************9876.6778899*************************************************86 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-07     0.001       3     199 ..      25     208 ..      24     210 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.2e-07
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH..HHHHHETTTE.........HHHHTHHHHHHHHHCHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgal..tgfatfigrg.........ayaigkpewltaldippdlgaai 90 
                 ++vfD+ GTL+++   v  v+ ++                   l+++     +++  ++f ++ ++          +   g  + + +  i + + ++ 
  CCG92060.1  25 AIVFDLVGTLLQTALPVGVVYSKL-------------------LAEYGIRSDPKVmhDNFIKVFDFFklrpqgsipK--DGDDKRFWEK-IVKTVLQES 101
                 799999999999997777777777...................3333333333334455555444445555556333..3333333333.456666677 PP

                 HHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  91 gsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqg 188
                 g   +     +++  +++ ++  ++ +k++pe+  a+ +  + g++++++++ ++  a+ ++++ G ++yf  ++ s + +vakp+   ++ ++ +   
  CCG92060.1 102 GIPLGSFFFDYFN--KLYSYYSQKEAWKPYPEVISALGKMSSLGFPLFVASNWDS-RARTVLREWGiRQYFLDIFLSAEWGVAKPEALFYHLVLLKTTK 197
                 7777777777777..8***********************************9998.6777******9999977777777889************99999 PP

                 TGGGEEEEESS CS
                 xxxxxxxxxxx RF
   Hydrolase 189 kpeevamVGDg 199
                 + + v +V+D 
  CCG92060.1 198 ESSAVFFVEDD 208
                 999******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1895.79
//
Query:       CCG92061.1  [L=441]
Description: Bifunctional folylpolyglutamate [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-14   54.6   0.0    2.7e-14   53.6   0.0    1.5  1  Mur_ligase_M  Mur ligase middle domain
      6e-08   32.8   0.0    1.3e-07   31.7   0.0    1.6  1  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0     3e-18   2.7e-14       1     191 [.      52     274 ..      52     275 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 3e-18
                   EESSS-HHHHHHHHHHHHHCTEEEEETTC..............................................SS-THHHHHHHHHHHHHTT-SE CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvg..............................................ttnneiglpktlaemekkeaey 51 
                   ++GtnGK +t+ +ia++l+++g ++g+                                                t+ + i++ + l+ ++  +++ 
    CCG92061.1  52 IAGTNGKGSTAAFIASALKRSGFKTGLYTsphlvtireriqinghpiskeqfshwvleiqekierikqrkkdfacTFFEIITMVAILEFFRC-KVDW 147
                   89*******************777777777779999***************************************************99999.**** PP

                   EEEE--HCHHHCTTTCCHCBESEEEE---TSTTHHHH.SSHHHHHHHHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEE CS
  Mur_ligase_M  52 avlEvsshglgekrlegllkpdvavitnispdHldfh.gtlenyaeaKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlr 147
                   +v E++    g     ++++p+  +itni+ dH +f+ +tle +ae+Ka +++    eg+ vi    p     +++l+  k ++++ g e  +  + 
    CCG92061.1 148 VVWETGLG--GRLDATNIVNPRLSIITNIDYDHTQFLgDTLESIAEEKAGIIK----EGVPVIVGKMP-----KEALAVIKKRALEKGAELID--IC 231
                   ********..44444555*******************889************8....34556666666.....33333333334444444433..22 PP

                   EE.EEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M 148 ak.nieeksegteiellevkggeleieipllGkhnvyNalaaiaa 191
                   ++ +i+  + ++e + + v+  ++ + ++l+G h++ Na++a+aa
    CCG92061.1 232 QSvEIKPLKMDYERQ-W-VEIANIPFCLGLTGIHQLDNAACAFAA 274
                   222444433333331.2.4667899******************98 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.5e-11   1.3e-07       1      78 [.     299     368 ..     299     381 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.5e-11
                   CTTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSE.EEEE CS
  Mur_ligase_C   1 vkgRlevvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasalads.lvvl 78 
                   ++gR++v+++  +++ i+D ahn+++++++++  ++i+ d+  +lvfg +++      ++++++++++++ ++s + ++
    CCG92061.1 299 WPGRFQVIRK--APLCIIDGAHNVAATKQLVANWEQIVGDEPYHLVFGVLQD------KNFPMMAEILKR-KASmVTLI 368
                   79*******9..99**********************************8555......669********9.55524433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3364.00
//
Query:       CCG92062.1  [L=451]
Description: Hemolysin or related protein containing CBS domains [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-37  128.5   8.7    3.2e-37  127.9   8.7    1.2  1  DUF21      Cyclin M transmembrane N-terminal domain
    3.1e-14   52.8   0.0    7.3e-14   51.5   0.0    1.7  1  CorC_HlyC  Transporter associated domain
    7.7e-12   45.5   0.0      4e-06   27.2   0.0    3.0  3  CBS        CBS domain
  ------ inclusion threshold ------
       0.13   12.4   0.0         15    5.8   0.0    2.2  2  p25-alpha  p25-alpha


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9   8.7   7.1e-41   3.2e-37       1     170 [.      12     204 ..      12     209 .. 0.97

  Alignments for each domain:
  == domain 1  score: 127.9 bits;  conditional E-value: 7.1e-41
       DUF21   1 liivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellae.............galav 86 
                 l+iv+l+l+++ff++aE+A+++++ ++l+ l ++++++   +lk+++np  +Ls+++ig+tl++++l+++a+++++ ++++             ++l+ 
  CCG92062.1  12 LLIVFLILANGFFVAAEFAIIKVRITELKLLLKTKDWRLPLALKIVQNPTLFLSATQIGITLSSLGLGWIAEPAMAGWIKAllfrlgishditlNSLSY 110
                 689****************************************************************************99****************** PP

       DUF21  87 viatvivtllilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil..........esesepavseeelkklveeseeeg 170
                 + a+ ++t+l + +gE++Pk lal+ya ki l+++p+l + ++l+yP++ +l+ ++n+ l          +++ ++ +s +el++++ +s+++ 
  CCG92062.1 111 LFALCLITFLSIALGELAPKFLALQYARKIILFTSPILTISSILFYPAISILNISANWALkllgfeppktTGRFGQSISMDELQQIIMHSAHAH 204
                 **********************************************************************999**************9998775 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   1.6e-17   7.3e-14       8      79 ..     367     436 ..     361     438 .. 0.94

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 1.6e-17
                 EEEETT-BHHHHHHHHTSTTHHCT-SBHHHHHHHHH-S---TT-EEEEEETTEEEEEEEEETTCEEEEEEEE CS
   CorC_HlyC   8 ylvdGslpldeleeelglelpeedyeTlgGlllellgriPkegesvevdleglrftVlemdgrrIkkvrvek 79 
                  +vdG+lpl++l+ e++++lp +  +T++ + +++++r Pk+ e + +d  g+ + V+e++ ++Ik+v++ +
  CCG92062.1 367 AVVDGDLPLRDLANETNWPLPTDTTQTVSEWCFDKIKRQPKKAEMFSID--GFNIVVEEVSPQKIKRVKLIR 436
                 589*****************************************99999..******************976 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     7e-06     0.032       5      52 ..     231     279 ..     225     280 .. 0.82
   2 !   27.2   0.0   8.8e-10     4e-06       7      56 ..     296     345 ..     291     346 .. 0.87
   3 ?   -1.9   0.0       1.1   4.7e+03       6      22 ..     363     379 ..     359     381 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7e-06
                 SBSSCEEEETTSBHHHHHHHHHHHTSSEEEEE.ETTT..BEEEEEEHHHHH CS
         CBS   5 mtrdvvtvppdttleealelmrekgvsrlPVV.dedg..klvGivtlrDll 52 
                 + ++vv++  ++++ e l++  ++g+sr+PV        +lvG+v l  ll
  CCG92062.1 231 PKDRVVVLWLNQPIQENLKIAQRSGYSRFPVCeG--SidNLVGMVLLQELL 279
                 44599***************99999*******52..2346*****998886 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 8.8e-10
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEEE.ETTTBEEEEEEHHHHHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPVV.dedgklvGivtlrDllrall 56 
                 r+ + ++p+t+l   le++r+++  +l +V d+++k++G+v+ +D+l+ l+
  CCG92062.1 296 RPALIFSPSTPLPVMLEKFRKART-HLAIVkDKNEKVIGLVSFEDVLEELV 345
                 5667899************77765.999**99999************9986 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.1
                 BSSCEEEETTSBHHHHH CS
         CBS   6 trdvvtvppdttleeal 22 
                 t+++ +v+ d +l++++
  CCG92062.1 363 TKEYAVVDGDLPLRDLA 379
                 78889999999999987 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0033        15      51      92 ..     324     363 ..     314     374 .. 0.84
   2 ?    4.4   0.0    0.0088        39      39      77 ..     390     430 ..     384     443 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0033
   p25-alpha  51 vkaksarkitfeqfkealeelaekkfkkkkkeeeleliekli 92 
                 vk+k+++ i + +f+++leel+ + ++++++ e+   i++l+
  CCG92062.1 324 VKDKNEKVIGLVSFEDVLEELVGD-IRDEFDIEKG-PIYELT 363
                 9*********************99.8888888887.555555 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0088
   p25-alpha  39 vtstdvDiiFsKvk..aksarkitfeqfkealeelaekkfk 77 
                  t+t  + +F K+k  +k+a   +++ f+ ++ee+  +k+k
  CCG92062.1 390 TTQTVSEWCFDKIKrqPKKAEMFSIDGFNIVVEEVSPQKIK 430
                 6899999******955567788999**********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3099.09
//
Query:       CCG92063.1  [L=222]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-19   69.6   0.0    2.2e-19   68.8   0.0    1.4  1  DUF374    Domain of unknown function (DUF374)


Domain annotation for each model (and alignments):
>> DUF374  Domain of unknown function (DUF374)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   1.2e-23   2.2e-19       3      68 ..      77     143 ..      75     144 .. 0.97

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 1.2e-23
      DUF374   3 rkkkklaaliSrsrDGeliarvlerlGiktirGSsskggaealremlral.kegesvaitpDgPrGP 68 
                 ++ +kl a++S s+DG++++r+l ++++ +  GSssk g +a++ +++a  keg+++a+tpDgPrGP
  CCG92063.1  77 FPSRKLIAMVSGSNDGKFLSRLLGQFNLFPASGSSSKRGISAFKRAIEAAkKEGCDIAVTPDGPRGP 143
                 6889**********************************************999************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1752.30
//
Query:       CCG92064.1  [L=124]
Description: hypothetical protein MFUM_300018 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-27   95.6   0.3    1.5e-27   95.3   0.3    1.2  1  Cas_csx3  CRISPR-associated protein (Cas_csx3)


Domain annotation for each model (and alignments):
>> Cas_csx3  CRISPR-associated protein (Cas_csx3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.3   8.5e-32   1.5e-27       5      78 ..      24      96 ..      20      97 .. 0.88

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 8.5e-32
                -SS--GGGGGT-----.--TTSEEEEEESS-HHHHHHHHHHTTTSSEEEEEETTT.EEEEEEES.S.SS-TT-EE CS
    Cas_csx3  5 ereiepedLkklelPeeidlkqgvvisGrgPiWlygylvhelhetawiavydprLegavvvash.trevrvGqvi 78
                ++++ep+ Lk+lelP+ +d ++gvv++GrgPiWlyg+lvh++h+++w++v+dpr+ g vvv+ h  ++ +vG+ i
  CCG92064.1 24 NGTVEPSVLKNLELPK-LDYTKGVVLHGRGPIWLYGHLVHQCHPARWVGVFDPRI-GGVVVERHhKEAPEVGETI 96
                6789************.**************************************.6666666505566899887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 875.90
//
Query:       CCG92065.1  [L=131]
Description: hypothetical protein MFUM_300019 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 933.83
//
Query:       CCG92066.1  [L=89]
Description: hypothetical protein MFUM_300020 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 661.82
//
Query:       CCG92067.1  [L=139]
Description: hypothetical protein MFUM_300021 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-06   27.6   0.2    3.1e-06   27.0   0.2    1.3  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain


Domain annotation for each model (and alignments):
>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.2   1.7e-10   3.1e-06      43      69 .]      86     112 ..      77     112 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.7e-10
  OrfB_Zn_ribbon  43 sgrtfkCpnCgfeadrDvnAaiNilkr 69 
                      g++f+C++Cg++ d+D ++a+N+ kr
      CCG92067.1  86 VGDKFVCRHCGYVSDADRVGAYNLKKR 112
                     5789********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1152.79
//
Query:       CCG92068.1  [L=328]
Description: General stress protein 69 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-70  238.0   0.0    1.4e-70  237.9   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
      0.093   12.9   0.0        1.5    9.0   0.0    2.6  2  PRE_C2HC      Associated with zinc fingers


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.9   0.0   1.5e-74   1.4e-70       2     293 ..      16     310 ..      15     311 .. 0.97

  Alignments for each domain:
  == domain 1  score: 237.9 bits;  conditional E-value: 1.5e-74
                   EEEE-SSS-ST...TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE...--SSSTTSSSS-HHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgsk..eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv...dlrdaeiksglskenireslees 93 
                   + lGtw +g+   + i+++ea++++ +a+e Gin +DtA++Yg g++ee++G+al    +k   ++iatK    ++  +ei+++ s+ +i +++e+s
    CCG92068.1  16 IALGTWVMGGWmwGGIDEKEAIQAIIKAVEGGINIIDTAPIYGFGKAEEIVGKALRL-IGKSHPIVIATKFgleWNQFGEIRRNSSPTRIKQEIEDS 111
                   788999888878889******************************************.9************999999999999************** PP

                   HHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBS CS
  Aldo_ket_red  94 lkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliays 190
                   l+rLg++ +D++++H+pd+++p  e ++++l  l+++GkiraiGvSnfs +q+e    kk  +i ++q  ynl++++ e++ll++c k+g+++ +y+
    CCG92068.1 112 LRRLGLSVIDIYQVHWPDSKVP-FEQTAECLLRLKEQGKIRAIGVSNFSTKQMELF--KKAAPIHTNQPPYNLFEREIEKELLPYCIKEGIATLTYG 205
                   **********************.*******************************88..*************************************** PP

                   TTGGGTTGTTTSS---SSSCCC-------..TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHH CS
  Aldo_ket_red 191 plggGlltgkyqseedkedkeprkdlkrd..ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseee 285
                   +l +Glltgk ++++ +++++ rk   ++  e++ + l+a+e+++ +a+ +g+slaq a  +al qp+v++v+ ga++++q+e+ ++a  ++l +e+
    CCG92068.1 206 VLCRGLLTGKFRPDSTFPNGDLRKIDPKFqgENFLRYLQAVEKFRPIAARYGKSLAQFAACWALMQPGVSVVLWGARRPSQIEEAFGATGWRLAQED 302
                   ******************999998877779******************************************************************* PP

                   HHHHHHHH CS
  Aldo_ket_red 286 vaeldell 293
                   ++ +d++l
    CCG92068.1 303 LRMIDKIL 310
                   *****985 PP

>> PRE_C2HC  Associated with zinc fingers
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00016       1.5       2      30 ..     106     134 ..     105     204 .. 0.76
   2 ?   -1.7   0.0      0.37   3.3e+03       2      13 ..     285     296 ..     284     299 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00016
    PRE_C2HC   2 aqIeeaLkkhgfevknihnmrkrntktPq 30 
                 ++Ie++L   g++v +i+ ++ ++ k+P 
  CCG92068.1 106 QEIEDSLRRLGLSVIDIYQVHWPDSKVPF 134
                 79*******************99666653 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.37
    PRE_C2HC   2 aqIeeaLkkhgf 13 
                 +qIeea+ + g 
  CCG92068.1 285 SQIEEAFGATGW 296
                 8******98885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2366.88
//
Query:       CCG92069.1  [L=606]
Description: GTP-binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-54  181.9   0.0    1.6e-53  181.2   0.0    1.4  1  GTP_EFTU      Elongation factor Tu GTP binding domain
    1.5e-48  163.4   1.0      3e-48  162.4   1.0    1.5  1  LepA_C        GTP-binding protein LepA C-terminus
    1.6e-20   72.9   0.0    3.6e-20   71.8   0.0    1.7  1  EFG_C         Elongation factor G C-terminus
    1.7e-12   47.5   0.1    4.1e-12   46.3   0.1    1.7  1  GTP_EFTU_D2   Elongation factor Tu domain 2
    6.4e-08   32.6   0.0    2.5e-07   30.7   0.0    1.9  1  EFG_II        Elongation Factor G, domain II
    0.00012   21.9   0.0    0.00023   21.0   0.0    1.4  1  RF3_C         Class II release factor RF3, C-terminal domain
    0.00015   21.9   0.0    0.00029   20.9   0.0    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
     0.0012   18.3   0.1     0.0086   15.5   0.1    2.2  1  SRPRB         Signal recognition particle receptor beta subun
     0.0035   17.0   0.0     0.0058   16.2   0.0    1.3  1  Ras           Ras family
  ------ inclusion threshold ------
      0.069   13.4   0.0       0.28   11.4   0.0    2.0  1  Roc           Ras of Complex, Roc, domain of DAPkinase
        0.1   12.7   0.0       0.43   10.6   0.0    2.1  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.2   0.0   9.6e-57   1.6e-53       2     193 ..       8     187 ..       7     188 .. 0.95

  Alignments for each domain:
  == domain 1  score: 181.2 bits;  conditional E-value: 9.6e-57
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE....TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SE CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle....ketkkylinliDtPGHvdFskevirglrvlDg 96 
                 rirn++ii+hvDhGKtTL+drLl+ tg++ +++ ++   ++lD+++ ErergiTik++ +++     ke++ y++nliDtPGHvdFs ev+r+l++++g
  CCG92069.1   8 RIRNFCIIAHVDHGKTTLSDRLLQITGTVVESKLQN---QMLDSMELERERGITIKAHPVTMTyfypKEKQYYQLNLIDTPGHVDFSYEVSRSLSACEG 103
                 89***************************9966655...59*********************9998889****************************** PP

                 EEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU  97 avlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvellp 193
                 a+lv+da++G+++qt  ++ la k+++ +i +iNK+D + a+ + + +++++ l        ++++++      + +S+++g g++++l+a+++ +p
  CCG92069.1 104 ALLVIDATQGIQAQTVSNVFLAEKHNLVLIPVINKIDLPTANPELVRKQLEEIL--------AIPADT-----AILASGKEGIGIDEILQAIIRQIP 187
                 ***************************************************888........566665.....7*******************9998 PP

>> LepA_C  GTP-binding protein LepA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.4   1.0   1.8e-51     3e-48       1     107 []     494     600 ..     494     600 .. 0.99

  Alignments for each domain:
  == domain 1  score: 162.4 bits;  conditional E-value: 1.8e-51
                 ESSCB-GGG-EEEETTTHHHHHHHHHHHHHHHS---SS-EEEEEEETTEEEEEEEE----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      LepA_C   1 ingekvdaLslivhrskaeergrklvekLkeliprqlfevaiqaaigskviaretikalrkdvlaklyggditrkkKllekqkegkkrlkkignveipq 99 
                 +nge+++aLs+ivh+skae+rgr++++kLke ipr+lf++a+qaaigsk+iare+i a+ k+v+ak+yggditrk+Kllekqkegkkr+k++g+v+ipq
  CCG92069.1 494 VNGEPIEALSCIVHTSKAESRGRAIIQKLKERIPRHLFKIALQAAIGSKIIAREDIGAIGKNVTAKCYGGDITRKRKLLEKQKEGKKRMKTFGKVDIPQ 592
                 7************************************************************************************************** PP

                 XXXXXXXX CS
      LepA_C 100 eaflavlk 107
                 eafl++lk
  CCG92069.1 593 EAFLEILK 600
                 ******96 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   2.2e-23   3.6e-20       2      88 ..     405     492 ..     404     493 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 2.2e-23
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-T.THHHCHHHCTTTS-EEEEEEEEEEE--HHHHHH CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeli.gfateLrslTkGegsfsmefsgYeevpgdklde 88 
                 + EP+v++ ++vp+e++g+ ++++s++rG +e++e+ ++++vi+++  Pl+e++ +f+++L+s+T+G+gs++++ +gY+ ++ +kld+
  CCG92069.1 405 IAEPLVNAYLIVPSENIGELMQLISEKRGSCETTETLDQNMVILHCIFPLNEILvDFNDKLKSITHGYGSMDYKPAGYRISDLVKLDI 492
                 78*******************************************************************************9999875 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.1   2.5e-15   4.1e-12       1      74 []     211     281 ..     211     281 .. 0.97

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 2.5e-15
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G++ ++r +sG++kkG+++ +  ++t+k+ +v +++     + +e+e+++g  +++i++ik+ ++ i++Gdt+t
   CCG92069.1 211 GVILYVRMFSGKIKKGEKILL--LSTKKSYEVKEVGIFNPKMVPEEELYEGNSGYIIANIKDPSE-IKIGDTIT 281
                  8899*****************..99*9999***********************************.******96 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.5e-10   2.5e-07       4      72 ..     299     370 ..     298     372 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.5e-10
      EFG_II   4 PvislaiepkskadedklskaLarlleEDptlrverdeeTketilsG.....mGelHleivverlkreykveve 72 
                 P+++  i p ++++ +kl++a+++l+  Dp ++++  +e+   + sG     +G lH+eiv erl+rey+v++ 
  CCG92069.1 299 PMVFSGIYPLNSSEFEKLKNAIQKLQINDPAITIS--QESSVALGSGfrcgfLGLLHMEIVQERLRREYGVDIL 370
                 899999************************99887..5666666666444457******************985 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.4e-07   0.00023       8      79 ..     298     372 ..     289     395 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.4e-07
                 --SEEEEEEESSGGGHHHHHHHHHHHH.HCTSSEEEEET.TS..S-EEEEESSTHHHHHHHHHHHHHH---EEEE CS
       RF3_C   8 aPElfarvrlkdplkrkqlrkgleqLa.eEGavqvfkeeeag..eelilgaVGqLQfeVveeRlknEYgvevrle 79 
                  P +f+ +   ++++  +l++++++L+ +  a+ + +e++    + +  g +G L +e+v+eRl++EYgv++ ++
  CCG92069.1 298 VPMVFSGIYPLNSSEFEKLKNAIQKLQiNDPAITISQESSVAlgSGFRCGFLGLLHMEIVQERLRREYGVDILTT 372
                 5889999*******************835567777766655564779************************8654 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.8e-07   0.00029       3     114 .]      13     138 ..      11     138 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.8e-07
                 EEEESTTSSHHHHHHHHHT...............STEEESSSTTSSSSEEEEEEE......ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltg...............ekaivsdkpgtTrdinegrvk......lkgkeielvDtpGliegaseekglgkaflalee.adli 79 
                 +i+ +   GK+tL  +l++               +  + +++ g T++    +++      ++  +++l+DtpG ++       ++ ++ +  + ++ +
  CCG92069.1  13 CIIAHVDHGKTTLSDRLLQitgtvvesklqnqmlDSMELERERGITIKAHPVTMTyfypkeKQYYQLNLIDTPGHVD-------FSYEVSRSLSaCEGA 104
                 56667788*********9666666666666544336788888899999988888877776333489********655.......3333333333289** PP

                 EEEEETTTTCSHHHHHHHHHHHHH..TTSEEEEEEES CS
    MMR_HSR1  80 llvvdaseeklkpldeeleellee..akkplilvlnk 114
                 llv+da+ ++++++  ++ ++     ++  li v+nk
  CCG92069.1 105 LLVIDAT-QGIQAQ--TVSNVFLAekHNLVLIPVINK 138
                 *****88.446444..444333220133334557776 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   5.3e-06    0.0086       5      89 ..      11     114 ..       7     161 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.3e-06
                 EEEEE-STTSSHHHHHHHHHHS...................S---B---SS-EEETTG......GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEE CS
       SRPRB   5 avllvGlsdsGKTslftrLttd...................svkktvtSqessaalkv...ksekgskltliDfPGheklrqklleklkaksslkglvf 81 
                 ++ ++   d GKT+l  rL++                    + ++  t  +  ++  +   k+++  +l+liD PGh+ + ++++ +    s   g + 
  CCG92069.1  11 NFCIIAHVDHGKTTLSDRLLQItgtvvesklqnqmldsmelERERGITIKAHPVTMTYfypKEKQYYQLNLIDTPGHVDFSYEVSRS---LSACEGALL 106
                 56777888899999999988766677777766666665554223333333333333336678888899***************9998...677888999 PP

                 EEETTS-H CS
       SRPRB  82 vvDStidp 89 
                 v+D+t   
  CCG92069.1 107 VIDATQGI 114
                 99998433 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.6e-06    0.0058      31     160 ..      58     186 ..      36     188 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.6e-06
                 TSSEEEEEEEEEET..TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG..G-SS-HH CS
         Ras  31 Tigvdfytkeievd..gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDlee..kravste 125
                 Ti +   t +  +   ++ ++l++ DT G  +f+   + +++ +eg+llv d t+    ++v++    +    ++n++++ v nK+Dl +   + v+++
  CCG92069.1  58 TIKAHPVTMTYFYPkeKQYYQLNLIDTPGHVDFSYEVSRSLSACEGALLVIDATQGIQAQTVSN----VFLAEKHNLVLIPVINKIDLPTanPELVRKQ 152
                 55555455555444447789******************************99998776666654....44555557999999******87435677777 PP

                 HHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 126 egeelakelglkfletSAktnenveeafeellrei 160
                   e la   +++ + +S k+  +++e++++++r+i
  CCG92069.1 153 LEEILAIPADTA-ILASGKEGIGIDEILQAIIRQI 186
                 777777777765.5589999999999999999987 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.28      30     120 .]      53     141 ..      12     141 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
                 TTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHHHHHHHCSSS-EEEEEE-TTT CS
         Roc  30 stigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWlkelkkvagkspvilvgnkiDl 120
                    g++++ + vt ++ +   k+++ ++ln+ Dt G+ +f+   +  l++ + a+lv+d+++  ++++  + + ++ ++ ++i v+nkiDl
  CCG92069.1  53 RERGITIKAHPVT-MT-YFYPKEKQYYQLNLIDTPGHVDFSYEVSRSLSACEGALLVIDATQGIQAQTVSNVFLAEKHNLVLIPVINKIDL 141
                 2334444444442.22.3345667789***************999**************9999998888888888888888999*****95 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00026      0.43      50     103 ..     124     185 ..     105     187 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00026
  MMR_HSR1_Xtn  50 egnrvYipclyvlNKiDl......isleeldelare..pnsvviSaekelnldeLkekiwee 103
                     ++  +  + v+NKiDl      +  ++l+e+     + ++  S ++++++de++++i ++
    CCG92069.1 124 LAEKHNLVLIPVINKIDLptanpeLVRKQLEEILAIpaDTAILASGKEGIGIDEILQAIIRQ 185
                   555555667889******77444433344444444354589999************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4401.91
//
Query:       CCG92070.1  [L=380]
Description: Signal peptidase I [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-09   35.3   0.2    1.5e-06   28.1   0.0    2.7  2  Peptidase_S24  Peptidase S24-like
    7.3e-07   29.1   0.0    5.9e-06   26.1   0.0    2.2  1  Peptidase_S26  Signal peptidase, peptidase S26


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0039        35       1      12 [.     114     125 ..     114     130 .. 0.90
   2 !   28.1   0.0   1.6e-10   1.5e-06      13      56 ..     222     283 ..     218     292 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0039
                    EXXSSTTCCTXX CS
  Peptidase_S24   1 rvpGdSMeptll 12 
                    ++p dSM+ptl 
     CCG92070.1 114 KIPTDSMKPTLY 125
                    69********95 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 1.6e-10
                    TTXEEEEECTS....---TTSEEEEEETTCE..............-EEEEEEEEETTEEEEE CS
  Peptidase_S24  13 dGdlilVdkfs....epkrGdivvfrlpgee..............eayiKrviglpgdrvll 56 
                     Gd +lV+k       pkrG+++vf++ g e              ++yiKr++g  gd++++
     CCG92070.1 222 TGDQVLVNKLIyhfrPPKRGEVIVFKTTGIEgieanlrlqgiegsQYYIKRCVGIWGDTLQI 283
                    69******6666666*******************************************9985 PP

>> Peptidase_S26  Signal peptidase, peptidase S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   6.5e-10   5.9e-06      91     132 ..     323     364 ..     218     369 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 6.5e-10
  Peptidase_S26  91 lpslqgcrvlaegelfllskevadSfDsRYfGpvpassvigv 132
                    l    +++++++  l++++++++dS+DsR++Gpvp ++++g+
     CCG92070.1 323 LVDPTETYTVPPLCLWAMGDNSPDSLDSRFWGPVPMQNIVGT 364
                    33344688999999*************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2832.38
//
Query:       CCG92071.1  [L=56]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.02   15.1   1.3      0.023   14.9   1.3    1.2  1  TrbC             TrbC/VIRB2 family
      0.035   14.4   8.0      0.036   14.3   8.0    1.1  1  DUF4064          Protein of unknown function (DUF4064)
       0.13   12.2   0.2       0.23   11.3   0.2    1.7  1  PetG             Cytochrome B6-F complex subunit 5
       0.15   11.7   4.2       0.16   11.6   4.2    1.0  1  Peptidase_M50B   Peptidase M50B-like
       0.35   11.3   2.7        0.3   11.6   1.5    1.5  2  DUF202           Domain of unknown function (DUF202)
        2.4    8.2   5.7       0.61   10.1   0.4    2.1  2  Gram_pos_anchor  LPXTG cell wall anchor motif
        3.6    7.5   6.4        1.8    8.4   0.2    2.1  2  LapA_dom         Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> TrbC  TrbC/VIRB2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.3   8.9e-06     0.023      54      88 ..      12      46 ..       6      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.9e-06
        TrbC 54 akviatiaiivaGimlafgrlswrtlvmvviGivi 88
                a +++ iai+++G++++  ++ +++l  +v++i+ 
  CCG92071.1 12 AAGVSSIAIAGLGFAVWSYYKKKKKLSFIVFFISA 46
                678999**************************985 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   8.0   1.4e-05     0.036      56     102 ..       5      51 ..       1      52 [. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
     DUF4064  56 flstllivlgvialiaivlgivgalllkknkkvsGilfiiaailslf 102
                   s+ + ++gv ++ ++ lg++   + kk+kk+s i+f+i+a+l l+
  CCG92071.1   5 LSSVCIGAAGVSSIAIAGLGFAVWSYYKKKKKLSFIVFFISALLALV 51 
                 555566688999********************************987 PP

>> PetG  Cytochrome B6-F complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   9.2e-05      0.23      15      35 ..      17      37 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.2e-05
        PetG 15 pVTlaGLFvaAYlQYkRgnql 35
                 + +aGL +a +  Yk+ ++l
  CCG92071.1 17 SIAIAGLGFAVWSYYKKKKKL 37
                689**************9987 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.2   6.3e-05      0.16      63     110 ..       4      51 ..       2      56 .] 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.3e-05
  Peptidase_M50B  63 glgqiltllaGYlgpallGlllillsasgkarlllvllvllllvllll 110
                     gl+++++ +aG    a++Gl++++ s+++k++ l ++++++ ++l l+
      CCG92071.1   4 GLSSVCIGAAGVSSIAIAGLGFAVWSYYKKKKKLSFIVFFISALLALV 51 
                     678999********************9999877776666665554444 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0043        11      48      63 ..      16      31 ..       2      36 .. 0.58
   2 ?   11.6   1.5   0.00012       0.3      17      54 ..      17      52 ..      15      56 .] 0.72

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0043
      DUF202 48 ivlgiltllvglvryl 63
                  ++i+ l++++++y+
  CCG92071.1 16 SSIAIAGLGFAVWSYY 31
                3444444444445444 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00012
      DUF202 17 slalialglallrffltgepsalgkilglilivlgilt 54
                s+a+++lg+a++     + +++l++i+ +i ++l++++
  CCG92071.1 17 SIAIAGLGFAVWSY--YKKKKKLSFIVFFISALLALVA 52
                9***********98..7777776566666666665555 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.4   0.00024      0.61      27      41 ..      18      36 ..      10      37 .. 0.59
   2 ?    0.4   0.7      0.25   6.4e+02      18      30 ..      40      52 ..      38      54 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00024
                     XXXXXXXX....XXXXXXX CS
  Gram_pos_anchor 27 allggllL....lvkrRKk 41
                     ++++gl++    ++k++Kk
       CCG92071.1 18 IAIAGLGFavwsYYKKKKK 36
                     33334444568*9999997 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.25
                     XXXXXXXXXXXXX CS
  Gram_pos_anchor 18 ifltaaGllallg 30
                     i++ + +llal++
       CCG92071.1 40 IVFFISALLALVA 52
                     6677888888875 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2   0.00071       1.8      20      49 ..       7      37 ..       3      39 .. 0.62
   2 ?    1.9   2.0     0.076     2e+02      24      39 ..      39      54 ..      37      55 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00071
    LapA_dom 20 sllllvafgiGa.llgwllslwsylrlrrel 49
                s+++ +a +  + ++g+ +++wsy +++++l
  CCG92071.1  7 SVCIGAAGVSSIaIAGLGFAVWSYYKKKKKL 37
                344444444444355555666*******998 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.076
    LapA_dom 24 lvafgiGallgwllsl 39
                +++f+i all++++ l
  CCG92071.1 39 FIVFFISALLALVANL 54
                5899999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 440.16
//
Query:       CCG92072.1  [L=154]
Description: hypothetical protein MFUM_300026 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-18   68.0   0.0    1.4e-18   67.8   0.0    1.0  1  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   7.7e-23   1.4e-18       1     141 []       1     148 [.       1     148 [. 0.98

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 7.7e-23
                 S-SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH.......HHHHHHCTTCEEEEEEEESSHH CS
         Usp   1 mykrIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada.......akaaaeaggvkvevvveegdpa 92 
                 myk Il+a+ ++e     + +  ela   +a+++llhv   +a++  +++ +++   e ++  +++e +         +++ +++g+++e+++  gd+a
  CCG92072.1   1 MYKSILLALENNERDLPIIAHVKELAFFLKAKVFLLHVMAGFAFPFPGYESWTVVSNETVENSMAKEMAInkekliaVARLFQEKGINTEIIIQYGDAA 99 
                 9********9999999************************************************9998779**************************** PP

                 HHHHHHHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp  93 eeilevaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 + i+e+  e+++dliV+Gs+ ++ +  ++ GS++  v ++a+ p l++r
  CCG92072.1 100 THIAEISLEKKVDLIVMGSHCHGLVGSIFWGSTAIPVRKKAKAPILLIR 148
                 *********************999999*******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1316.22
//
Query:       CCG92073.1  [L=562]
Description: Formate--tetrahydrofolate ligase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.5e-231  768.2   0.0   3.9e-231  768.1   0.0    1.0  1  FTHFS     Formate--tetrahydrofolate ligase
  ------ inclusion threshold ------
       0.15   11.9   0.1       0.46   10.4   0.1    1.9  1  HTH_25    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> FTHFS  Formate--tetrahydrofolate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  768.1   0.0  4.4e-235  3.9e-231       3     552 ..       9     560 ..       7     562 .] 0.99

  Alignments for each domain:
  == domain 1  score: 768.1 bits;  conditional E-value: 4.4e-235
                 HHHHHHCS----HHHHHHCTT--CCCEEEBSTTEEEE-CHHCCTCTTTS-.-EEEEEEESS--TT--SHHHHHHHHHHHHHHTT--EEEEE----SHHH CS
       FTHFS   3 dieiaqeaklkpieeiaeklglkeeelelyGkykakvslkvlerllkekkkgklilvtaitPtplGeGKttttigLaqalnklgkkavaalRepslGPv 101
                 d++ia+e+kl  ieeia++++++++++e+yG+  ak+s ++l++l ++ k+gklilvta tPtp+GeGKttt+igL++++n+lg+ka+++lReps+GP+
  CCG92073.1   9 DLKIAREKKLLAIEEIAKRIDIPSRSIECYGHFIAKISWQYLKELFAQPKRGKLILVTATTPTPAGEGKTTTAIGLTDGFNRLGHKAILCLREPSMGPI 107
                 99************************************************************************************************* PP

                 HCST--SCEETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTTTT-EECCCE---EEESS--GGGSSEEES-SSTTS---EEE-EEEGGGS CS
       FTHFS 102 fgiKGgAaGGGysqvvPmedinLhltGDihaitaannllaalidnrifheneldidpkkitwkrvlDvndraLRkivvglggkekgvpretgfditvas 200
                 fg+KG+A+G G +qvvP e+inLh+tGD+ a++aa+nllaalidn+++++n+l idp+k++w rvlD+ndr+LRki +gl ++ k +pr + fdi +as
  CCG92073.1 108 FGVKGAATGAGLAQVVPREEINLHFTGDFAAVAAAHNLLAALIDNHLYQGNTLGIDPRKVSWGRVLDLNDRSLRKILLGLESR-KSFPRVSFFDIVAAS 205
                 ********************************************************************************875.789************ PP

                 HHHHHHHH-SSHHHHHHHHHC-EEEEETTS-EEECCCCT-HHHHHHHTTTTTS-EEEEETT--EEEE-----SSSS--B--HHHHHHHHHH-SEEEEEB CS
       FTHFS 201 EimailaLakdledlkerlgrivvaytkdgepvtaedlkvagalavllkdaikPnlvqtlegtpalvHggPFAniahGcnsviatklalkladyvvtEa 299
                 E+mail+L++++ dl+erl++i v+ + ++++vtaedl++aga+ +ll +a+kPnlvqtle++p++vHggPF niahGc+svi+ ++al+l+d+vvtEa
  CCG92073.1 206 ELMAILCLSQSYMDLRERLANIQVGRRWNDTKVTAEDLEAAGAMSALLVHALKPNLVQTLENNPVFVHGGPFGNIAHGCSSVISLNTALRLSDWVVTEA 304
                 *************************************************************************************************** PP

                 SSSTTTHHHHHHHTHHHHHT---SEEEEEEEHHHHHHHTT--CCCTTS--HHHHHHHHHHHHHHHHHH.CTTT--EEEEEE--TT--HHHHHHHHHHHH CS
       FTHFS 300 GFgadlgaekfldikcrasglkpdavvlvatvraLklhggvekeelkeenlealekGlanlekhienv.kkfgvpvvvainkfktDteaelelvkelae 397
                 GFg+dlg ekf++i cr+sgl+pd++v+v+t+raLk+hgg+e  +l++++l+ lekGl nl +hie v + fgvp+v+ +n+f+ D+e+e++++ ++++
  CCG92073.1 305 GFGSDLGGEKFVNILCRQSGLSPDCAVIVTTIRALKYHGGMELGSLANKDLAFLEKGLPNLLRHIEIVeEGFGVPAVIGLNRFSVDSEEEIDWLGKKLA 403
                 ********************************************************************778**************************** PP

                 CTTSEEEEE-HHHHGGGGGHHHHHHHHHHCC..--.---SS-TTS-HHHHHHHHHHHTT--SEEEE-HHHHHHHHHHHHTTCTTS-EEEE--SSSSSSS CS
       FTHFS 398 akavevalsevwakGgeGalelaeavveale..ekefkflYdlelsieekietiakeiYgadgvelseeakkklkklekqgldklpvciaKtqySlsdd 494
                 +++ +++++++w++Gg Ga++la++v+e  +  ++ +kf Y +++++ eki++ia +iY+a +++++++a +++k++e +gl ++p+c+aKtqyS+s d
  CCG92073.1 404 DMGHSFVICNHWQQGGLGAMDLARKVIEKSSlhKSYCKFSYADSDTVVEKIRKIAFNIYKAGDLSFHPTAYDEIKRIEGEGLTHFPLCMAKTQYSFSVD 502
                 ****************************99974577*************************************************************** PP

                 TT--SS--S-EEEEEEEEEETTTTEEEEESST--SS----SS-GGGC-EE-TTSEEES CS
       FTHFS 495 pklkgapegftltvrevrlsaGagfivalageimtmPGlpkkpaaekidvdeegkieG 552
                 p+lkgapeg+++ vre+r+++Ga++i++++gei tmPGlpk p+  +id+d +g+i G
  CCG92073.1 503 PNLKGAPEGHHFYVREIRAATGAKYILVVCGEINTMPGLPKVPSSSHIDIDVDGNIIG 560
                 ********************************************************99 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   5.2e-05      0.46       2      28 ..      10      36 ..       9      37 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.2e-05
                HHHHHHTTT--HHHHHHHSS--HHHHH CS
      HTH_25  2 LraaRearglsleevaketkIrkdyle 28
                L+ aRe++ l +ee+ak++ I+ + +e
  CCG92073.1 10 LKIAREKKLLAIEEIAKRIDIPSRSIE 36
                899*******************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3824.04
//
Query:       CCG92074.1  [L=637]
Description: ResB protein required for cytochrome c biosynthesis [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-16   58.0  17.6    0.00091   18.1   0.0    5.1  5  ResB      ResB-like family


Domain annotation for each model (and alignments):
>> ResB  ResB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   7.7   3.5e-05      0.63       1      80 [.      35      95 ..      35      99 .. 0.90
   2 !   16.8   1.8   1.2e-07    0.0022     149     185 ..      98     134 ..      95     162 .. 0.87
   3 ?   -2.4   0.0      0.08   1.4e+03     271     320 ..     313     374 ..     300     402 .. 0.68
   4 !   15.6   0.0   2.9e-07    0.0052     192     254 ..     485     547 ..     467     549 .. 0.84
   5 !   18.1   0.0   5.1e-08   0.00091     429     461 ..     574     606 ..     560     608 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 3.5e-05
        ResB  1 mrlAlvLLlllaiaSiiGtvlpQnepsanyvqqyiaegpflaeildkLglfdvYsswWFllilalLvvSlvgCilprlpk 80
                +rlA++LLl +a+  +i t+++ +    ++v+q+                  +Y+s+WF   l+lL+++l + +l+r+p 
  CCG92074.1 35 LRLAIFLLLSIALGCAIATIVESR--LDTQVAQF-----------------YIYKSPWFFGWLILLCINLFAVTLTRIPW 95
                589999999999999999999999..77799999.................5************************9985 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.2e-07
        ResB 149 srlGnlvfHialvliligallgslfgfrgnvivpeGq 185
                 + +G +v+H +++++ligal+g   gf+g +++ +G 
  CCG92074.1  98 RHIGFIVTHYGIIILLIGALIGLQKGFEGFITLEAGG 134
                 679****************************999986 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.08
        ResB 271 lklvllkgksaqelelpgtv.slslra.lelane.......elrnvgpavqfkvrdpd...g 320
                  ++++l++  ++ ++lpg+   ++ ++ ++++ +       + ++ +pa+ + v +++   +
  CCG92074.1 313 KRAWPLNEVMQKVVDLPGEGkMEVAEYwPNFSIKegkptslSGEPLNPAILVHVYWQQnrtQ 374
                 45666666666667777777655555566655557788888999999999999999994322 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 2.9e-07
        ResB 192 ldsfrdGslvqelpfslrldkFtveyydtkgqpkeFesdvtvldkgk.eakektikVNhPlryk 254
                 l +++ G +v +lpf + l+kF+v + + +++p++F s++++ d+++ +    + + N P++y 
  CCG92074.1 485 L-QISYGFKVISLPFFVSLEKFEVPRNEGSDAPSDFISTLKFEDPKTkKIVIGKAHMNYPASYP 547
                 4.77889999******************988************988745577778888888875 PP

  == domain 5  score: 18.1 bits;  conditional E-value: 5.1e-08
        ResB 429 sgLqvsrdpgknlvllgalllvlGlvlslyvrh 461
                 s+Lqv +dpg ++ ++g+l++++G++ +++++ 
  CCG92074.1 574 STLQVLYDPGWPFKWIGSLMICIGILTMFFISP 606
                 78****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 3910.75
//
Query:       CCG92075.1  [L=349]
Description: Phenylalanyl-tRNA synthetase alpha chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-92  308.6   0.0    3.4e-92  308.3   0.0    1.1  1  tRNA-synt_2d     tRNA synthetases class II core domain (F)
    2.4e-17   62.6   0.7      4e-17   61.9   0.7    1.3  1  Phe_tRNA-synt_N  Aminoacyl tRNA synthetase class II, N-termin


Domain annotation for each model (and alignments):
>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.3   0.0   3.8e-96   3.4e-92       3     244 ..      96     344 ..      94     345 .. 0.96

  Alignments for each domain:
  == domain 1  score: 308.3 bits;  conditional E-value: 3.8e-96
                   -TSSCTSCTSHSB-SHHHHHHHHHHHHHHCTTCEESSTTSEEEHHHHTSTTTSTTTSHHHCHTTSEBTCTSSS-...ECESEEE-SSTHHHHHHHHT CS
  tRNA-synt_2d   3 dvtlpgkrieagklhpltkvleeikeiflelgfeevegpevesefynfdaLnvpqdhpaRdmqdtFylkkpeka...veekllLRthttavqirtle 96 
                   d tlpg++  +g+lhp++  l++i eif ++gf++  gpe+ese+ nfdaLn+p  hpaR+ qdtFy+k++ +       +llLR +t++vqir+++
    CCG92075.1  96 DSTLPGRPFLSGTLHPISIALKKIIEIFQRIGFTIECGPEIESEYNNFDALNIPVGHPARNEQDTFYIKENLSLednSPGRLLLRPQTSPVQIRVMK 192
                   7899****************************************************************9998773334568**************** PP

                   TS-SSEEEEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHHHCTSTEEEEEEECEETTEEEEEEEEEEE...CCSSSSEEEEE CS
  tRNA-synt_2d  97 kkkppikiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleellkklfgaevkvrfrpsyfpftePsaevdvyl...vekkkkwlEll 190
                   k+++pi++i++gr++Rrd++Dath+++F qveglvvd+++sladlkg+le ++++l g+++++rfrp+yfpftePs+evd  +     +  +wlEl+
    CCG92075.1 193 KNQLPIRMIAPGRCYRRDEIDATHSIVFWQVEGLVVDKGISLADLKGTLEYFFRELLGNQLQFRFRPHYFPFTEPSFEVDGAIatqEGEAPRWLELC 289
                   ********************************************************************************999765556779***** PP

                   EEEEE-HHHHHHTT-..TTSEEEEEEEEHHHHHHHHHT-SSGHHHHTT.HHHHGG CS
  tRNA-synt_2d 191 gaGmvrpevleavgid.eevsgfafGlGveRlamlkygieDiRelvendlrflrq 244
                   g+Gmv+p+v+ ++gid e +sgfafG+G+eR  m+ ++++D+R + end+rfl++
    CCG92075.1 290 GCGMVHPKVFLNMGIDpEIYSGFAFGFGIERYLMVVHKVPDLRLFSENDFRFLKN 344
                   ****************************************************986 PP

>> Phe_tRNA-synt_N  Aminoacyl tRNA synthetase class II, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.7   4.5e-21     4e-17       2      63 ..      21      82 ..      20      85 .. 0.95

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 4.5e-21
                     CCCCCCCCHHHHHCCCCCCCCCCCTTTTCCCCTTTHHHHCCHHHHCCCCCCCCCHHHCCHCC CS
  Phe_tRNA-synt_N  2 dleeLeelRvkyLGkkGeltellkelgklppeeRkeaGkliNelKqeieealeerkeeleaa 63
                     ++e++e lR+ky+G+kG ++ ll ++g+lp+e R+ +Gk++NelK +++e+l +++  l aa
       CCG92075.1 21 TKEAIESLRIKYFGRKGIVSTLLEKIGQLPKESRPIVGKKLNELKSKLQESLHKKEISLSAA 82
                     789****************************************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2568.26
//
Query:       CCG92076.1  [L=901]
Description: Isoleucyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.4e-179  595.5   0.0   1.2e-178  595.2   0.0    1.1  1  tRNA-synt_1    tRNA synthetases class I (I, L, M and V)
    5.5e-32  110.8   0.2    1.2e-31  109.7   0.2    1.6  1  Anticodon_1    Anticodon-binding domain of tRNA
    4.9e-17   61.8   0.0    3.7e-07   29.2   0.0    3.2  3  tRNA-synt_1g   tRNA synthetases class I (M)
     0.0028   17.2   0.0     0.0054   16.3   0.0    1.4  1  tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
  ------ inclusion threshold ------
      0.012   15.0   0.0       0.54    9.6   0.0    2.2  2  tRNA-synt_1e   tRNA synthetases class I (C) catalytic domain
       0.54   10.2   7.2        2.2    8.2   7.2    2.1  1  zf-FPG_IleRS   Zinc finger found in FPG and IleRS


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  595.2   0.0    4e-182  1.2e-178       1     601 [.      26     625 ..      26     626 .. 0.94

  Alignments for each domain:
  == domain 1  score: 595.2 bits;  conditional E-value: 4e-182
  tRNA-synt_1   1 klyekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgre 98 
                  ++ e We+e+v+   le +k+ ++fil+dgPP+++G+ H+G  l+k+lkdiv ++k+m G++ +y pGwD++Gl+ie+kv  +          +    
   CCG92076.1  26 QWIEIWEKEKVYAILLELRKNSPKFILHDGPPFANGKAHMGSGLNKILKDIVLKSKNMFGFQCPYIPGWDCHGLPIEHKVMSETPS------LSNDPP 117
                  6899**************************************************************************99887522......334567 PP

  tRNA-synt_1  99 efrekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkkdalihvafplad 196
                   +r+k++e+++  +e +++q+krlGv   +d++y+T+d+++e++  + f +l++k l+yrg ++v+ws  +ktal+e+Evey+ k+d +i+v+fp+++
   CCG92076.1 118 TIRKKCQEYAKGWIEVQKEQFKRLGVLGAWDNPYITMDPHYEANELRLFAELVEKKLVYRGLRPVFWSIGCKTALAEAEVEYQKKEDISIYVEFPVSE 215
                  89**********************************************************************************************99 PP

  tRNA-synt_1 197 kee........vklviaTTtPeTllgdtavavnpeldyv...itkeklilaeallkslvkkesekkiledergkeLegkevelplvnrkipiiaddyv 283
                  k++         ++ ++TTtP+Tl++++a+avnp+l y    +  ++li+ ++l  ++ k ++++ il   +gk+Leg+++ +pl  r   + a d+v
   CCG92076.1 216 KSCkegglpqgSSFLVWTTTPWTLPANLALAVNPDLSYElrrVGSKYLIVSSKLAPTIPKLSESTLILSFSKGKKLEGLQYVHPLLPRYGEVYAADFV 313
                  999999****9***************************988666777777888888888888999********************************* PP

  tRNA-synt_1 284 dkeaGtGvVkiaPahdedDyevgkkynlevinildedgtlteea..aefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkpiiyrateq 379
                   +e+G+G+V+iaP+h+ +Dy++g + +l v +++d+ g++t+e+  ++  g +vfda+ ++ + l+ekgll  ++   h +pfc+rsk+pii+r+++q
   CCG92076.1 314 SEETGSGIVHIAPGHGMEDYQLGVEKGLAVFSPVDDLGRFTKECgiEKIVGRNVFDANPILCDMLEEKGLLWAKKLYVHDYPFCWRSKTPIIFRSVPQ 411
                  *******************************************9999*************************************************** PP

  tRNA-synt_1 380 WfvrvkeladaalkavekvqfvpkskekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkalekeakdkl..kk 475
                  Wf+++++++ +al+++ekvq++pk++e+r++  +e ++dWciSRqr+WG +ip+f+ k+ e +    ++    a+++ee++++ +++ ++++     +
   CCG92076.1 412 WFINIERFKIQALHEIEKVQWIPKRGENRIKGAVESRKDWCISRQRYWGIPIPVFYRKDGEPLLD-PKIIRRFADMVEEQGTDLWFQLDSEELRkkLD 508
                  ***********************************************************776655.777777888**********9988764432113 PP

  tRNA-synt_1 476 ekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslgNvid 573
                      +ek  d+lDvW +Sgs++f++l  p           pad++leG+D++rgW+++++ll++a +g++Pfk+vl+hg+v+d +G+K+SKs g    
   CCG92076.1 509 VPTGYEKGMDTLDVWIDSGSSHFAVLV-PRG-------ENPADLYLEGSDQHRGWFQSSLLLGVASKGKAPFKSVLTHGFVVDLDGKKLSKSSGAKDL 598
                  34579*********************9.666.......359*****************************************************8766 PP

  tRNA-synt_1 574 pldvikkygadalRltlilsdvgrdinl 601
                  +++ i++ygad lRl++++ + ++d+ +
   CCG92076.1 599 SEQ-INEYGADLLRLWVASEEFSEDVPF 625
                  655.79*************999999865 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   0.2     4e-35   1.2e-31       1     151 [.     670     822 ..     670     823 .. 0.89

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 4e-35
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk.ra.aqevllevletllrllaPfmPfitEelwqreeeel 96 
                  dr++   +++l+k+++++y++y+f +++++l  f++ +l+++y+++ k+rly++ ++   r+ aq+vl+ ++e+l++llaP++Pf++Ee+w    + +
   CCG92076.1 670 DRYFDFCIDQLIKKTKASYANYEFPQVYQSLVRFCSVELSSFYIDILKDRLYCDGKNWLsRRsAQTVLHRAFESLVKLLAPIIPFTAEEAW----RVF 763
                  5666667899*******************************************998888*888****************************....9** PP

  Anticodon_1  97 gkkesimlaewpekaeel.ekel.e...eeevellkeivkairklrselkikpsselkvv 151
                  gkk+si+l+ +p  +++  e+++ e   ++ + l++ ++  ++k+r e+ i+++ e+kv+
   CCG92076.1 764 GKKNSIHLELFPT-EKDRqEGAHlEqrwQKILRLRDLANIELEKARREKRIGKNLEAKVI 822
                  ************5.44443555553577888888888999****************9997 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.2e-10   3.7e-07       8     136 ..      57     198 ..      52     202 .. 0.84
   2 !   14.6   0.1   3.4e-06      0.01     167     238 ..     395     464 ..     387     473 .. 0.85
   3 !   13.8   0.0   6.2e-06     0.019     309     373 ..     569     632 ..     551     642 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.2e-10
                   B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTT...........S-HHHHHHHHHHHHHHHHHHTT-..--SEEEET CS
  tRNA-synt_1g   8 pYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekeg...........vtpeelvekvheeikelfkklni..sfdkygrt 91 
                   p+angk H+G  l+ i  Di+ + k + g ++ ++ g D hG pie k  +e             + +e+++   e +ke+fk+l++  ++d+ + t
    CCG92076.1  57 PFANGKAHMGSGLNKILKDIVLKSKNMFGFQCPYIPGWDCHGLPIEHKVMSETpslsndpptirKKCQEYAKGWIEVQKEQFKRLGVlgAWDNPYIT 153
                   89********************************************99877642222112111133456666667789999***9996679999999 PP

                   TSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-E CS
  tRNA-synt_1g  92 tseehkelvqeifkklkekgliyekeieqlycpkderflpdryve 136
                    + + +    ++f +l ek+l+y++   ++++  +++ l++ +ve
    CCG92076.1 154 MDPHYEANELRLFAELVEKKLVYRGLRPVFWSIGCKTALAEAEVE 198
                   99999999999*****************************99987 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.4e-06
                   ..........EEE.EEEEEE-GGGGHHHHHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SSS-EET CS
  tRNA-synt_1g 167 pksaisgskpevketehlffklskfekklkewieeeekeleenvkkivkewlkegLkdlaisrdldwGipvP 238
                   p +  s++  ++++  ++f ++++f+ +  + i e+ +  +++ ++ +k  +++  kd++isr+  wGip+P
    CCG92076.1 395 PFCWRSKTPIIFRSVPQWFINIERFKIQALHEI-EKVQWIPKRGENRIKGAVES-RKDWCISRQRYWGIPIP 464
                   5566677777899999**********9999999.66657899999999999999.8**************** PP

  == domain 3  score: 13.8 bits;  conditional E-value: 6.2e-06
                   ----S-EEEE--E.EE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-HHHHHH CS
  tRNA-synt_1g 309 lklpkkvvaheyl.tvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDldfswedfve 373
                       k+v +h+++  ++gkKlSkS g   + +e ++++ adllR ++a+ +++++D+ fs e f +
    CCG92076.1 569 KAPFKSVLTHGFVvDLDGKKLSKSSGAK-DLSEQINEYGADLLRLWVAS-EEFSEDVPFSKEIFSR 632
                   44568899***97369*********987.8899999********99876.5689999999987765 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.8e-06    0.0054      84     136 ..     291     343 ..     224     360 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.8e-06
  tRNA-synt_1_2  84 ftglkaihPitgekipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpi 136
                     +gl+ +hP+  +  +++ a++v  e g+g v   P+h  +D++   + +l +
     CCG92076.1 291 LEGLQYVHPLLPRYGEVYAADFVSEETGSGIVHIAPGHGMEDYQLGVEKGLAV 343
                    68999**************************************9887777765 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.019        55      21     122 ..      61     176 ..      54     219 .. 0.71
   2 ?    9.6   0.0   0.00018      0.54     239     296 ..     574     630 ..     543     634 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.019
                   S--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB....--SHHHHHHHHHTTS-.......HHHHHHHHHHHHHHHHHHTT----SB--BGG...G CS
  tRNA-synt_1e  21 dashlGhaRslvafDilrrilqalgYdvqfvqnvt....DidDkiikrareeeks.......vkelaekfieefkkdleaLnvlkptleprvs...e 103
                    ++h+G + + +  Di+ +  +++g++  ++         i+ k++ +  + ++        ++e a+ +ie  k++++ L+vl +  +p ++   +
    CCG92076.1  61 GKAHMGSGLNKILKDIVLKSKNMFGFQCPYIPGWDchglPIEHKVMSETPSLSNDpptirkkCQEYAKGWIEVQKEQFKRLGVLGAWDNPYITmdpH 157
                   579**************************99765311225778887776655444555555588888888888888888888887766666552223 PP

                   GHHHHHHHHHHHHHTTSEE CS
  tRNA-synt_1e 104 kvdeiielvekliekgyaY 122
                   + ++  +l ++l+ek   Y
    CCG92076.1 158 YEANELRLFAELVEKKLVY 176
                   4444445555555555555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00018
                   EEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS-TTS-EEE-HHHH CS
  tRNA-synt_1e 239 kyflhnghlkiegekmsksLknfitikdvlkkfdprqlRllllsahyrsqldfkeell 296
                       h  ++ ++g+k+sks +    + + ++++ +  lRl ++s+++ + + f++e +
    CCG92076.1 574 SVLTHGFVVDLDGKKLSKSSGA-KDLSEQINEYGADLLRLWVASEEFSEDVPFSKEIF 630
                   3344555679*********986.5789999***********************99865 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.2   0.00074       2.2       2      30 .]     863     893 ..     862     893 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00074
                   SB-TTT--B..BEEEECTTEEEEE-TTTT.. CS
  zf-FPG_IleRS   2 epCpRCwry..iervgqagrstyfCprCqkv 30 
                    +CpRCw    ++    +++ +++C+rC kv
    CCG92076.1 863 GKCPRCWKFslFAQRNEDPEFPHVCERCLKV 893
                   59******966666666***********886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (901 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 6167.11
//
Query:       CCG92077.1  [L=298]
Description: Opacity protein or related surface antigen [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   15.5  19.1      0.032   14.3  19.1    1.7  1  OMP_b-brl  Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3  19.1   1.8e-06     0.032      22     157 ..      76     263 ..      69     287 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.8e-06
   OMP_b-brl  22 fyvg..gglglskvkv............dgvgsdsgfgfgvgagyef.....ndn.....vgvegglsy....sgdkdysgs................g 76 
                  y+g  gg+g+ ++++            ++ g+++ + +gv++gy++     +dn     + +++ + +     g +++sgs                 
  CCG92077.1  76 LYAGlyGGAGYMDTNNynsnfssgllgrGNLGGNWQWVGGVKVGYQWkgwelGDNlagkgWYLMPAAEFdgfyIG-NSQSGSgftgfatgpmtiaaasT 173
                 455444555555444322455556665433466669*********995555533344444777777765334333.23333357778898877776665 PP

   OMP_b-brl  77 ktdikinllsvpvnagyafnlsdsvlpyggaGlgytkvevdvsgng.........asdsdtdfglglgaGveyaladnwslkaeYrytdl 157
                 +t ++ n+  +++n  +++ ++ ++ py+g G+g +++  ++  +          as++d  f ++  aG+ey+++ ++sl +e++   +
  CCG92077.1 174 NTGMQLNMGIMTINGLLKLVTPWKLVPYIGMGVGGYYLSASNISQSvaghgivngASTTDGGFVFTPIAGAEYYFTRELSLFVEFKFLYM 263
                 55566666666777666665444488********555555544444555667777799999999999**************999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2227.68
//
Query:       CCG92078.1  [L=319]
Description: NADPH:quinone reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-21   75.1   0.2    9.2e-21   74.2   0.2    1.5  1  ADH_zinc_N    Zinc-binding dehydrogenase
    5.2e-16   59.9   0.0    1.5e-15   58.4   0.0    1.7  2  ADH_zinc_N_2  Zinc-binding dehydrogenase
      1e-10   41.4   0.0    1.2e-09   38.0   0.0    2.2  2  ADH_N         Alcohol dehydrogenase GroES-like domain
     0.0013   18.6   1.5     0.0036   17.2   0.4    2.2  2  YAcAr         YspA, cpYpsA-related SLOG family
  ------ inclusion threshold ------
      0.035   14.2   0.2      0.055   13.6   0.2    1.3  1  DapB_N        Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.2   2.6e-24   9.2e-21       1     116 [.     151     264 ..     151     278 .. 0.92

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 2.6e-24
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEEEH CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeefdl 99 
                 gvG+aavq+Ak  G +v a++++++  el+ + Ga+ v+n+ e+ +v +i e t+ +g+d+++e+++ ++ le+ ++ll+  G++ v+G + g+ e+d+
  CCG92078.1 151 GVGIAAVQWAKSRGLRVLATAGTAKGKELVLDVGAEKVFNHGEEGYVNKILEYTQNQGIDIILEMLA-NKNLENDFSLLANYGKILVIG-SRGKIEIDP 247
                 9****************************************6659**********************.*********************.677788*** PP

                 HHHHHTT-EEEEE-SSC CS
  ADH_zinc_N 100 rnlllkeksilGsllgs 116
                 rn+l+ke+s++G++l  
  CCG92078.1 248 RNILRKEVSVIGVNLFL 264
                 ************98766 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.5   5.5e+03      36      70 ..     128     162 ..     119     178 .. 0.54
   2 !   58.4   0.0   4.2e-19   1.5e-15       2     133 .]     184     317 ..     183     317 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.5
                   .HHHHHHE.EEEEEEEE----.S-EEE-CHHHCTTT CS
  ADH_zinc_N_2  36 leaslkvl.pggGrlvsiggpplsaallkpakkrkg 70 
                   ++a++++  +  G+ v + g +   +++++++ +k+
    CCG92078.1 128 YHALFQCAgAEAGQTVLVHGASGGVGIAAVQW-AKS 162
                   36677777766677655554443333333333.222 PP

  == domain 2  score: 58.4 bits;  conditional E-value: 4.2e-19
                   T-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHH CS
  ADH_zinc_N_2   2 GAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileela 94 
                   GA++v+++ +e ++    + t+++g+D++l+++++++l e+ +++l+++G++++ig++  + ++ +++  rk+ sv  + lf +++s+++ i++++ 
    CCG92078.1 184 GAEKVFNHGEEGYVnkilEYTQNQGIDIILEMLANKNL-ENDFSLLANYGKILVIGSR-GKIEIDPRNILRKEVSVIGVNLFLASSSQRKAIFAAIQ 278
                   99****9998888889**99*9****************.****************954.56677777777888999999999555557888899999 PP

                   HHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  95 alieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   a ++ + l p +  + ple+aa Ah+ +++g a+GKiVl
    CCG92078.1 279 AGLKNKSLWPIIRAEIPLEQAALAHKMIMEGGATGKIVL 317
                   9999999*******************************8 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   3.4e-13   1.2e-09       2      62 ..      28      88 ..      27      93 .. 0.94
   2 ?    1.5   0.0     0.075   2.7e+02      92     108 ..      91     107 ..      87     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 3.4e-13
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE- CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvve 62
                  vli vkaag++  D  +  g+  ++ +lp+i+G + +G++eevg++v+k+++G+ V+ +
  CCG92078.1 28 ASVLIAVKAAGVNPVDTYLRAGSFGYQSNLPFIPGIDGAGIIEEVGEGVSKFHKGQTVFFQ 88
                579*******************99**********************************976 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.075
                 -SSSBSEEEECGGGEEE CS
       ADH_N  92 dGgfaeyvvvpekklvk 108
                  G++a+y+v+pe+ +++
  CCG92078.1  91 LGSYAQYIVCPEDRVFE 107
                 69*********999876 PP

>> YAcAr  YspA, cpYpsA-related SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.4     1e-06    0.0036      26      59 ..     137     169 ..     128     172 .. 0.90
   2 ?   -0.5   0.0      0.34   1.2e+03      16      41 ..     289     313 ..     233     314 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1e-06
       YAcAr  26 aeapidmvlvhGgakGaDrlAarWAaergvelvr 59 
                 aea+ + vlvhG++ G+   A +WA++rg  +++
  CCG92078.1 137 AEAG-QTVLVHGASGGVGIAAVQWAKSRGLRVLA 169
                 6788.69**********************99875 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.34
       YAcAr  16 liwatLdklhaeapidmvlvhGgakG 41 
                 +i+a++   +a    + ++++Gga+G
  CCG92078.1 289 IIRAEIPLEQAALA-HKMIMEGGATG 313
                 45555544455555.56778888776 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   1.5e-05     0.055       3     100 ..     143     241 ..     141     260 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.5e-05
                 EEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS.--S-BEBSSHHHHHHH.-SEEEE-S-HHHHHHHHHHHHHTT-EEEE--S CS
      DapB_N   3 vavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglg.klgvavtddleevlek.advliDFTtpeavlenlklalekgvklViGTT 99 
                 v+v+GasG +G + v+ +++ ++l++ a   + + +    d+g    ++   +  v++ le + ++  d++++  + + + + ++l++++g+ lViG+ 
  CCG92078.1 143 VLVHGASGGVGIAAVQWAKS-RGLRVLATAGTAKGKELVLDVGAEKVFNhGEEGYVNKILEYTQNQgIDIILEMLANKNLENDFSLLANYGKILVIGSR 240
                 89****************99.7777777777766455556666544444244455666677766669******************************97 PP

                 S CS
      DapB_N 100 G 100
                 G
  CCG92078.1 241 G 241
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2089.17
//
Query:       CCG92079.1  [L=222]
Description: Thiamine-phosphate pyrophosphorylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-58  196.5   0.0    2.7e-58  196.3   0.0    1.1  1  TMP-TENI        Thiamine monophosphate synthase
     0.0017   17.8   0.0     0.0029   17.0   0.0    1.4  1  Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
     0.0031   17.0   0.1     0.0082   15.6   0.0    1.7  2  His_biosynth    Histidine biosynthesis protein
  ------ inclusion threshold ------
       0.13   11.5   0.0       0.37   10.0   0.0    1.7  1  ThiG            Thiazole biosynthesis protein ThiG


Domain annotation for each model (and alignments):
>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.3   0.0   5.9e-62   2.7e-58       2     181 .]      18     197 ..      17     197 .. 0.97

  Alignments for each domain:
  == domain 1  score: 196.3 bits;  conditional E-value: 5.9e-62
    TMP-TENI   2 ylvtdskldkneellevveealkggvtlvqlRekeldarellelaeklaalcrkygvpliindrvdlalavgadgvHlgqddlpvaearellgpdliiG 100
                 y + d + ++ e+l +  e++++g v+++qlR+k+l++r+++ela++++    ++++ +iind+ d+al++gadgvHlgq+d+p+++ar+ l ++ +iG
  CCG92079.1  18 YGILDLGYVPAEKLKAYSEQLAEGRVDILQLRAKNLEKRKIAELAREIQSSLVEKEILFIINDYPDIALEIGADGVHLGQEDMPIEQARKYLSEEFLIG 116
                 666777777889999999********************************************************************************* PP

    TMP-TENI 101 lSvhsleeaeeaealgadYigvGpifpTdtKkdaeplgleglkelaealeiPvvaiGGitlenvaevleagadgvavvsai 181
                  S+h+l++a++a+++ +dYi++Gpif+T+tK+d  p+g+e +++++e++++Pv+ iGGi++en+  vl agad++ +vsa+
  CCG92079.1 117 KSTHTLSQALAAAQEPVDYIAFGPIFKTPTKPDYLPVGIESIATIKERIKKPVFFIGGINKENISLVLSAGADRIVMVSAL 197
                 *******************************************************************************96 PP

>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   6.4e-07    0.0029     149     197 ..     154     197 ..     148     198 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.4e-07
                     HHHHHHHHHHHHHHHT---EEEEESS--TTTCHHHHHHT--EEEESHHH CS
  Ribul_P_3_epim 149 vlekikkvrklidekeldlkievDGGvkldnieqiaeagadvlVagsav 197
                      +e i +++++i++      ++  GG++++ni+ + +agad +V+ sa+
      CCG92079.1 154 GIESIATIKERIKK-----PVFFIGGINKENISLVLSAGADRIVMVSAL 197
                     56666667777766.....67777**********************997 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.87   3.9e+03      32      69 ..      28      66 ..      26      75 .. 0.57
   2 !   15.6   0.0   1.8e-06    0.0082      62     115 ..     155     210 ..     149     215 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.87
                  HHHHHHHHHHT-S.EEEEEEHHHHCTTHHHHHHHHHHHH CS
  His_biosynth 32 velakryeeegad.elhvvDldaakegreanldlveeia 69
                  +e +k+y+e+ a+ ++ ++ l a + ++++  +l +ei 
    CCG92079.1 28 AEKLKAYSEQLAEgRVDILQLRAKNLEKRKIAELAREIQ 66
                  555666666665534556666666555555555555554 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.8e-06
                   HHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHH...HHH-THHHHHH CS
  His_biosynth  62 ldlveeiaeevfipvqvGGGIrsledveelleagadkviigta...avknpelikel 115
                   ++ +++i e+++ pv   GGI++ + +  +l+agad++++ +a   a + pe+++++
    CCG92079.1 155 IESIATIKERIKKPVFFIGGINKEN-ISLVLSAGADRIVMVSAllgAKDIPEFCRQM 210
                   678999****************998.**************99944334456666555 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   8.4e-05      0.37     165     221 ..     156     211 ..     152     219 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 8.4e-05
                 HHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHH CS
        ThiG 165 ealkiiieeakvPvivDAGigspsdaaqamelGadavllntavaeakdpvamArafk 221
                 e + +i e++k Pv    Gi + +++  ++  Gad +++ +a+  akd+ +  r ++
  CCG92079.1 156 ESIATIKERIKKPVFFIGGINK-ENISLVLSAGADRIVMVSALLGAKDIPEFCRQMR 211
                 568999**************87.6899**********************99998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1632.81
//
Query:       CCG92080.1  [L=453]
Description: Pyruvate carboxylase subunit A [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-72  243.6   0.1    2.1e-72  243.0   0.1    1.2  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    1.3e-44  151.2   0.8    2.2e-44  150.5   0.0    1.8  2  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    6.4e-38  129.2   0.0    2.1e-37  127.5   0.0    1.9  2  Biotin_carb_C    Biotin carboxylase C-terminal domain
    1.2e-07   31.5   0.0      2e-07   30.7   0.0    1.3  1  ATP-grasp        ATP-grasp domain
      4e-07   29.8   0.0    9.1e-07   28.6   0.0    1.5  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
     0.0054   16.8   0.0      0.017   15.2   0.0    1.8  1  ATP-grasp_3      ATP-grasp domain
  ------ inclusion threshold ------
      0.028   14.0   0.0        1.6    8.3   0.0    2.4  2  RimK             RimK-like ATP-grasp domain
       0.12   11.8   0.0       0.21   11.0   0.0    1.3  1  ATP-grasp_5      ATP-grasp domain


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.0   0.1   9.4e-76   2.1e-72       2     209 ..     116     322 ..     115     324 .. 0.98

  Alignments for each domain:
  == domain 1  score: 243.0 bits;  conditional E-value: 9.4e-76
                  HHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEE CS
  CPSase_L_D2   2 kesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvev 99 
                  k  a+  ++k++vpv+p+s+++ve+++eal+i+++igyPviika +g+GG+Gmr+a+n+  l++ + +a  ea+ +fg+ ++++ek ++ p+++E+++
   CCG92080.1 116 KAMARFHARKVGVPVAPGSDGIVESEKEALKISHQIGYPVIIKAVAGGGGRGMRIAHNDVSLVQGFVAAKLEAEKSFGDGSLYIEKLIEDPRHVEFQI 213
                  566778899***************************************************************************************** PP

                  EEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HHH CS
  CPSase_L_D2 100 lrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvk 197
                  l+D+kg +++v+er++s+q+r+qk++e+ Ps+ ++++ r+++++++++++++v+++g gtve+l+d+  +++y+iE+N R++ve++++e++ G+dlvk
   CCG92080.1 214 LADTKGKIVHVGERDCSIQRRNQKLVEESPSPIMDPALRKRMGKTSIRLAESVDYEGVGTVEYLVDK-AGNFYFIEMNCRIQVEHPVTEEVYGVDLVK 310
                  ******************************************************************7.****************************** PP

                  HHHHHHTT--GC CS
  CPSase_L_D2 198 eaakialgekLe 209
                  e++ +a+g++++
   CCG92080.1 311 EQILVAAGYSIS 322
                  ********9976 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.0   9.9e-48   2.2e-44       1     109 [.       1     109 [.       1     110 [. 0.98
   2 ?   -3.2   0.2       5.6   1.2e+04       9      28 ..     395     414 ..     387     419 .. 0.67

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 9.9e-48
                    ---EEEE---HHHHHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHHHH CS
  Biotin_carb_N   1 kikkvlianrGeiAvriiravrelgietvavyseedanslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGflsEnaefaeave 96 
                    +++k+lianrGeiA+riira+r+lgi+t+avyse+d++slhv++adea+++g+++++esYl++++i++aa+  ++da+hpGyGfl+En++fae ++
     CCG92080.1   1 MFNKILIANRGEIALRIIRACRDLGIKTLAVYSEADEKSLHVQQADEAICIGSGPSTESYLRMDRIISAAEIGDVDAIHPGYGFLAENPHFAEICA 96 
                    799********************************************************************************************* PP

                    HTT-EESSS-HHH CS
  Biotin_carb_N  97 eagivfiGPsaea 109
                    + +i+fiGP+a++
     CCG92080.1  97 NCNIKFIGPKATT 109
                    *********9986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.6
                    --HHHHHHHHHHHHHTT-EE CS
  Biotin_carb_N   9 nrGeiAvriiravrelgiet 28 
                     r e+  r+ ra++e  ie 
     CCG92080.1 395 SRDEAIARMNRALNETIIEG 414
                    37778888888888876654 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.9   6.5e+03      65      98 ..      60      93 ..      50     103 .. 0.71
   2 !  127.5   0.0   9.3e-41   2.1e-37       1     107 [.     336     442 ..     336     443 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.9
                   HHHHHHHHHT-EEESS-BSHHHHHHHHH-HHHHH CS
  Biotin_carb_C 65 larlrraLaelrieGvktnieflrailedeefak 98
                     r++r+++  +i  v    + +  ++e+++fa+
     CCG92080.1 60 YLRMDRIISAAEIGDVDAIHPGYGFLAENPHFAE 93
                   5578888888888888888777777777777765 PP

  == domain 2  score: 127.5 bits;  conditional E-value: 9.3e-41
                    EEEEESEETTTTTEE--CE-SEEE---STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEESS-BSHHHHHHHHH-HHH CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelpegpgvRvdsgveegsevspyyDsllaKlivhgetreealarlrraLaelrieGvktnieflrailedeef 96 
                    e+R+n+Ed  ++f+ps+Gk++ l+lp+gpg+Rvds++++g e+spyyDs+laK+i+ g++r+ea+ar++raL+e+ ieGvkt+i++ ++++++++f
     CCG92080.1 336 EFRVNSEDGLQDFRPSAGKIDFLHLPGGPGIRVDSHLYQGIEISPYYDSMLAKIIAIGNSRDEAIARMNRALNETIIEGVKTTIPIGKSVFQNTDF 431
                    89********************************************************************************************** PP

                    HHT---TTTCC CS
  Biotin_carb_C  97 akgeldtkfle 107
                    ++g+++t++++
     CCG92080.1 432 KRGDYTTNLIN 442
                    ********997 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   9.1e-11     2e-07      13     159 ..     137     292 ..     123     294 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 9.1e-11
                 EECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-EEE-.-EEEEEEET CS
   ATP-grasp  13 aveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGetafy.pvvetvqed 102
                 +ves++e+ ++ +++g+pv++K ++ g  G+G  + +++ +l q + a+        +++++++E+ ++  + +   +  +++G+++ + +    +q++
  CCG92080.1 137 IVESEKEALKISHQIGYPVIIK-AVAGGGGRGMRIAHNDVSLVQGFVAAkleaeksfGDGSLYIEKLIEDPRHVEFQILADTKGKIVHVgERDCSIQRR 234
                 5889999***************.788889*********99988876666689999999**************************966551555567776 PP

                 TEEEEEEECEE.-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS CS
   ATP-grasp 103 gilrlsvapae.vsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapR 159
                 +   +   p++ ++ +  k+  ++  +++e++++ Gv +vE  v + g+ ++ E+  R
  CCG92080.1 235 NQKLVEESPSPiMDPALRKRMGKTSIRLAESVDYEGVGTVEYLVDKAGNFYFIEMNCR 292
                 65555555555156678888899999*******************9999999998777 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   4.1e-10   9.1e-07      25     173 ..     141     290 ..     128     292 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.1e-10
                      -HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHH.HHHHHHTT.....-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS CS
  Dala_Dala_lig_C  25 kellekveeelgypvfVKpareGSSvGvskveseeelke.aieeafky.....dekvlvEeai.egreievavlgneklevsevgeivvkkgfy 111
                      ++   k+ +++gypv++K++  G   G+  +++   l + ++++ ++      d +  +E+ i + r +e  +l + k ++ +vge+  +  + 
       CCG92080.1 141 EKEALKISHQIGYPVIIKAVAGGGGRGMRIAHNDVSLVQgFVAAKLEAeksfgDGSLYIEKLIeDPRHVEFQILADTKGKIVHVGERDCS--IQ 232
                      35567999**********************999888755234333332112348899******999********************8765..55 PP

                      -HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEE CS
  Dala_Dala_lig_C 112 dyeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvN 173
                      + ++k ++++ +      ++++ ++++ +++++  + +d +G++ v +++++ g++++ E+N
       CCG92080.1 233 RRNQKLVEESPS----PIMDPALRKRMGKTSIRLAESVDYEGVGTVEYLVDKAGNFYFIEMN 290
                      777888643332....2357788999999********************************9 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.6e-06     0.017      24     159 ..     145     294 ..     115     296 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.6e-06
                  -EESS--SSSEEEEESS-------B--SS--TTE...................EEEE---S.EEEEEEEEE.SSSEEEEEEEEEEEET.....TEEEE CS
  ATP-grasp_3  24 aeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefieG.kplSvsllsdgekvlvlavnrqliekaeke.fvyaG 107
                   +  ++  +++++K + G+gg ++r+++++ ++ + +   +             + + ie  +++  ++l+d++  +++ v +     ++++      
   CCG92080.1 145 LKISHQIGYPVIIKAVAGGGGRGMRIAHNDVSLVQGFVAAKleaeksfgdgslYIEKLIEDpRHVEFQILADTKG-KIVHVGERDCSIQRRNqKLVEE 241
                  33445559**********************999988887778899999**9987888888538899999998755.5555555444443333144445 PP

                  EEES----H.HHHHHHHHHHHHTTSTT--EEEEEEEEESS..SEEEEEEESS-- CS
  ATP-grasp_3 108 nvtpietel.keevvelaeevvekleglaGyvGvDlvlkd.eepyviEvNPRlt 159
                  + +pi     ++++ ++  ++ e++ +  G+  v+ ++ + ++ y+iE N R++
   CCG92080.1 242 SPSPIMDPAlRKRMGKTSIRLAESV-DYEGVGTVEYLVDKaGNFYFIEMNCRIQ 294
                  5566655446999999999999999.99999999988888799*********98 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00072       1.6      21      68 ..     135     180 ..     115     195 .. 0.81
   2 ?    3.0   0.0     0.029        65     135     181 ..     259     309 ..     249     315 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00072
                 EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHH CS
        RimK  21 talardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqv 68 
                   ++++e++a k+ ++i  + Pv++K v g  G ++ +a++  +l+q 
  CCG92080.1 135 DGIVESEKEALKISHQI--GYPVIIKAVAGGGGRGMRIAHNDVSLVQG 180
                 56777788888888888..7*******************999988875 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.029
                 HHHHHHHCT-SEEE.EE.EEEETTEEEEEEEESS--SHH..HHHHHT--HH CS
        RimK 135 AikaakamelvvaG.vD.llrakrgllvlEvnsspglek..iektlgidia 181
                  i+ a+ ++   +G v+ l+++  +++++E+n   ++e+   e   g+d+ 
  CCG92080.1 259 SIRLAESVDYEGVGtVEyLVDKAGNFYFIEMNCRIQVEHpvTEEVYGVDLV 309
                 556666665555553567899999*********999986325666677765 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.4e-05      0.21      21      55 ..     125     161 ..     111     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.4e-05
  ATP-grasp_5  21 aygipvvetr..lassaeeaveaaeeigypvvlKivs 55 
                   +g+pv++    +++s++ea+++  +igypv +K v 
   CCG92080.1 125 KVGVPVAPGSdgIVESEKEALKISHQIGYPVIIKAVA 161
                  6788888865226*********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2979.13
//
Query:       CCG92081.1  [L=41]
Description: hypothetical protein MFUM_310001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        91  (0.00507558); expected 358.6 (0.02)
Passed bias filter:                       84  (0.00468515); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 309.02
//
Query:       CCG92082.1  [L=66]
Description: hypothetical protein MFUM_310002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       133  (0.00741815); expected 358.6 (0.02)
Passed bias filter:                      111  (0.00619109); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 557.59
//
Query:       CCG92083.1  [L=249]
Description: hypothetical protein MFUM_310003 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-05   24.2   0.6    3.3e-05   23.6   0.6    1.3  1  HNH_3            HNH endonuclease
    6.2e-05   23.1   5.6    0.00013   22.1   5.6    1.6  1  HNH              HNH endonuclease
  ------ inclusion threshold ------
       0.02   14.9   1.8      0.045   13.8   1.8    1.7  1  Elf1             Transcription elongation factor Elf1 like
      0.042   13.8   0.0      0.074   13.0   0.0    1.3  1  Rad52_Rad22      Rad52/22 family double-strand break repair p
      0.075   13.4   0.6      0.075   13.4   0.6    1.8  2  Lar_restr_allev  Restriction alleviation protein Lar
      0.086   12.6   1.3         13    5.6   0.0    2.4  2  zinc_ribbon_10   Predicted integral membrane zinc-ribbon meta


Domain annotation for each model (and alignments):
>> HNH_3  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.6   1.1e-08   3.3e-05      19      45 ..      51      77 ..      33      78 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.1e-08
       HNH_3 19 lvVdHiDgdksnnrpeNLrlvTkeena 45
                l+++HiD d+sn  +eNL +v+++ ++
  CCG92083.1 51 LEIHHIDEDPSNTKIENLIVVCRNCHT 77
                68********************98775 PP

>> HNH  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   5.6   4.2e-08   0.00013       1      45 [.      40      80 ..      40      82 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.2e-08
         HNH  1 CeyCgrkfhksealevdHiipisqggaddieNlqllCksCHnkkh 45
                C  Cg  +  +  le++Hi++      + ieNl+ +C++CH+k +
  CCG92083.1 40 CPFCGVADVAV--LEIHHIDEDP--SNTKIENLIVVCRNCHTKIT 80
                88888888888..*******998..5556************9965 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.8   1.5e-05     0.045       3      58 ..      21      82 ..       4      97 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
        Elf1  3 RkkkakkrkkkkkkklptkFdCpfCnheksvevkldkkek........iaevsCkvCgesfetk 58
                Rk+   +    kk + +   +CpfC+  ++   ++++ ++        + +v C++C+++++++
  CCG92083.1 21 RKS--VSSLASKKLYQEADNRCPFCGVADVAVLEIHHIDEdpsntkieNLIVVCRNCHTKITCE 82
                333..2222233333577789*******99999999988889999999999*********9987 PP

>> Rad52_Rad22  Rad52/22 family double-strand break repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.5e-05     0.074      10      82 ..       6      80 ..       2      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.5e-05
  Rad52_Rad22 10 ekklgpeyvsqregksgkkvaylegskviqlaNevFgfnGWsseiesievdeieeeqegq....rysvkaealvrvt 82
                 +k+++++++ +r+ ++++ v+ l ++k++q a++ + f G   ++  +e+++i+e+ +++     + v+ +++ ++t
   CCG92083.1  6 DKPQHEDQAAKRPKQRKS-VSSLASKKLYQEADNRCPFCG-VADVAVLEIHHIDEDPSNTkienLIVVCRNCHTKIT 80
                 689999************.*******************99.678999999999999988845544445555555555 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       4.9   1.5e+04      46      56 ..       6      16 ..       4      17 .. 0.74
   2 ?   13.4   0.6   2.5e-05     0.075       5      48 ..      39      88 ..      37      98 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.9
  Lar_restr_allev 46 deaeaekeaie 56
                     d+ ++e++a++
       CCG92083.1  6 DKPQHEDQAAK 16
                     56688998886 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.5e-05
  Lar_restr_allev  5 pCPfCggravlersqrvvaeigq.......cvyCadCgastpwfkiaedea 48
                      CPfCg ++v + +  +  e           v C +C   + + +++++  
       CCG92083.1 39 RCPFCGVADVAVLEIHHIDEDPSntkienlIVVCRNCHT-KITCEEISPAD 88
                     6********99999888776555899****999999998.44555454444 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0045        13      30      52 ..      23      45 ..      19      46 .. 0.86
   2 ?    5.5   0.2    0.0047        14      21      32 ..      68      79 ..      56      89 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0045
  zinc_ribbon_10 30 shnGlapkeeleevkyrCpkCga 52
                    s++ la+k+ ++e   rCp+Cg+
      CCG92083.1 23 SVSSLASKKLYQEADNRCPFCGV 45
                    56778999999**********96 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0047
  zinc_ribbon_10 21 yalICskChshn 32
                    + ++C++Ch++ 
      CCG92083.1 68 LIVVCRNCHTKI 79
                    4568*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2020.23
//
Query:       CCG92084.1  [L=413]
Description: putative DNA modification methylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-10   40.1   0.0    1.2e-07   31.6   0.0    2.2  2  N6_N4_Mtase      DNA methylase
  ------ inclusion threshold ------
      0.014   15.1   0.1      0.039   13.7   0.0    1.7  2  UPF0020          Putative RNA methylase family UPF0020
      0.098   12.4   0.0       0.16   11.7   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
       0.11   13.3   0.0       0.23   12.2   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
       0.12   12.6   0.0        3.1    8.0   0.0    2.7  3  CxC1             CxC1 like cysteine cluster associated with K


Domain annotation for each model (and alignments):
>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   3.5e-11   1.2e-07     175     227 ..      64     115 ..      49     119 .. 0.82
   2 !    6.3   0.0    0.0019       6.7       2      58 ..     277     350 ..     276     393 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 3.5e-11
                  ---HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHH CS
  N6_N4_Mtase 175 qkPvallerlIklstkkgdivlDpFaGSGtTavaakelgrkfiGieieeeyve 227
                   +P++++ r +    +k+++vlDpF+G GtT+ aa+ lg  ++Gi+ ++ ++ 
   CCG92084.1  64 MFPLEFPLRRLT-NADKNEWVLDPFCGRGTTLFAARLLGLGCVGIDSNPIAAA 115
                  566666666554.3578*****************************9986655 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0019
                  EEEEE--SSSSSCS......................GCCGCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-C CS
  N6_N4_Mtase   2 dlivtdpPYntgkdy.................endeqyeeedsyeeyleflekvlkevrrvLkddgsifinidd 58 
                  + +vt+pPY+    y                   +++ + ++s + + e l +v+k v +  +++ +++i +++
   CCG92084.1 277 NWVVTSPPYFGMCTYrpdqwlrnwflggadavDYSQEGQISHSADRFTEELSNVWKSVAKRCSPGAILIIRFGY 350
                  679***********************999976555555566778899999**********99999999998875 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.1e-05     0.039      21      54 ..      72     105 ..      68     138 .. 0.83
   2 ?   -2.6   0.0         1   3.6e+03     119     131 ..     273     285 ..     256     288 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
                 HHHTT--TTS-EEETT-TTSHHHHHHHHHHTT-- CS
     UPF0020  21 vrlagwkpgepllDPmCGsGtilIEaallgania 54 
                  rl++++++e  lDP+CG Gt l  a llg  ++
  CCG92084.1  72 RRLTNADKNEWVLDPFCGRGTTLFAARLLGLGCV 105
                 58999****************9999988887776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1
                 TS---EEEE---- CS
     UPF0020 119 egevdvivtnpPY 131
                 +  ++ +vt pPY
  CCG92084.1 273 SYRFNWVVTSPPY 285
                 4468899*****9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.6e-05      0.16       2      54 ..      78     127 ..      77     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.6e-05
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld 54 
                      dk+  vlD+ CG G+ +f++  +lg     vGiD ++ a   A +++++  +d
       CCG92084.1  78 DKNEWVLDPFCGRGTTLFAAR-LLG--LGCVGIDSNPIAAAIAAAKLAQTTSD 127
                      68888***************9.665..4589*****99988888877776666 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.3e-05      0.23       1      51 [.      83     129 ..      83     158 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.3e-05
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefv 51 
                      vLd  cG+G++++a+   lg    +g+D ++ + ++a++++++     + v
       CCG92084.1  83 VLDPFCGRGTTLFAAR-LLG-LGCVGIDSNPIAAAIAAAKLAQT--TSDAV 129
                      89*******8777665.446.99***************999764..33333 PP

>> CxC1  CxC1 like cysteine cluster associated with KDZ transposases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.2   7.8e+03      42      61 ..     286     305 ..     284     308 .. 0.85
   2 ?    8.0   0.0   0.00087       3.1      44      73 ..     337     366 ..     329     375 .. 0.86
   3 ?    1.1   0.0      0.12   4.3e+02      23      49 ..     375     401 ..     369     406 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.2
        CxC1  42 fCkCtpdavrllalGylass 61 
                 f  Ct ++ + l++++l+++
  CCG92084.1 286 FGMCTYRPDQWLRNWFLGGA 305
                 678999999999***99986 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00087
        CxC1  44 kCtpdavrllalGylasspvkpqtaFslpl 73 
                 +C p a+ +++ Gyl+s pv  +    + l
  CCG92084.1 337 RCSPGAILIIRFGYLPSVPVDAREILQMSL 366
                 6*******************9987766654 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.12
        CxC1  23 tkrtvdlvdllgqkrekvefCkCtpda 49 
                  +r++d    ++ +r++ +fC+ ++ a
  CCG92084.1 375 IRRWIDAGSANNGRRQSEQFCRMMKAA 401
                 6899999999999********998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2938.96
//
Query:       CCG92085.1  [L=387]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2899.30
//
Query:       CCG92086.1  [L=714]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-20   73.8   0.0    4.7e-20   72.7   0.0    1.5  1  DUF87       Helicase HerA, central domain
  ------ inclusion threshold ------
      0.013   15.6   0.1      0.031   14.4   0.1    1.6  1  HAS-barrel  HAS barrel domain
       0.15   12.0   0.0       0.54   10.2   0.0    1.9  1  BPL_C       Biotin protein ligase C terminal domain


Domain annotation for each model (and alignments):
>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   7.9e-24   4.7e-20      16     227 .]     188     418 ..     177     418 .. 0.77

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 7.9e-24
       DUF87  16 ldlnklvtrHlAilgsTGsGKSntvavLleelle.........kkga....tililDpHGEYgkal.........ekllsekvkvitpspsa....... 85 
                 +++  lv r++++++++G GKSn+v++L+++l++                  ++i+Dp+GEY++ +          ++l +kv+v+tp+ ++       
  CCG92086.1 188 FHVLDLVARRTLVFARAGFGKSNLVKLLFANLYRntptvekrgG--KqvpvGTVIFDPDGEYFWPDdknrpglcdVPELLDKVVVFTPKAGPssfyqsf 284
                 566689*********************************86552..044669************************************9888******* PP

       DUF87  86 kdkelkinpwsldpeelldllee..ddkpaaav.qrsvleealdqakakeekeklssdepveklleelkkekeelrklknqaiarlldkledllrkggs 181
                  +  +++++++l+p ++++++    ++++++ + ++ + e  ++q+++  ++++    +  ++++         l +l +++ a++ +++ ++ +  + 
  CCG92086.1 285 VAGDIRLDIRRLRPSDVISIALPpeKQDQQNVRkLKGMNEADWHQLVD--LIHRDGNGADGQTVR--------RLIRLEDSQDAEMVAARANMTTIVRM 373
                 9*******************9996644444333355566666777763..333222222222222........44456666666666666666666666 PP

       DUF87 182 fsnsstdliallleklekegkitiidlsgvdelaqqlvvsvilrri 227
                  ++ s++++++l  ++ +eg+i +id+s++    + ++ ++il+ri
  CCG92086.1 374 LHDPSSQMMDML-LVALREGRICVIDVSQMRGMPALVLSGLILQRI 418
                 644455566666.7889************99999999999999876 PP

>> HAS-barrel  HAS barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   5.1e-06     0.031      22      90 ..      38     109 ..      17     111 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.1e-06
  HAS-barrel  22 dvkvGeyVeielp.dgeivlGmvtdirrgn....selsndlalvlsleeleeangddevalatedtgvkvlGev 90 
                  ++ G +++++l+ ++e vlG++t+i++ +    s  +++  +  s+e+ ++++    +++  + +  +vlG v
  CCG92086.1  38 APMHGQFLVVQLEdEDEAVLGRITSISSQGrlvsSAGEDYGIRAVSEERPIPEDLREQYLKYRVNM--RVLGVV 109
                 57889********99*************88887766666666666666666665555555555544..888876 PP

>> BPL_C  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0     9e-05      0.54       6      29 ..      47      70 ..      47      71 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9e-05
                EEEEETSCEEEEEEEEE-TTSEEE CS
       BPL_C  6 VtlededgkveGiavGIdddGaLl 29
                V leded+ v G+++ I+++G+L+
  CCG92086.1 47 VQLEDEDEAVLGRITSISSQGRLV 70
                899*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 4554.96
//
Query:       CCG92087.1  [L=470]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-15   56.8   0.0    9.7e-15   54.9   0.0    2.0  2  SIR2_2    SIR2-like domain


Domain annotation for each model (and alignments):
>> SIR2_2  SIR2-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.43   7.7e+03      41      67 ..     106     133 ..      85     145 .. 0.51
   2 !   54.9   0.0   5.4e-19   9.7e-15       2     115 ..     232     390 ..     231     416 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.43
      SIR2_2  41 esgrtllyklhGsl.srpesi.vltesdY 67 
                  + +  l+ +  s+ s +e++ ++t+s+ 
  CCG92087.1 106 APAWIELFYMIASVlS-REDFsYVTRSQL 133
                 4444444444444433.333334444444 PP

  == domain 2  score: 54.9 bits;  conditional E-value: 5.4e-19
      SIR2_2   2 liiTTNYDdllekaleesgkpvsd......................aavskedlerelseaesgrtllyklhGslsrp..................... 57 
                 +++T NYD+l+e+a   +g+   d                      a++++  ++r      ++  +lyklhGs++++                     
  CCG92087.1 232 NLFTLNYDTLIEQAGDAEGAVLVDgfvgtlrrvfrpesydidfyfpAQTTEGRVHR-----FDRALHLYKLHGSITWHrcepdwenpfgvyatfynqdc 325
                 589****************************9999999998876655555555655.....99************767788899999*******99999 PP

      SIR2_2  58 ...esi.vltesdYeella.rktpiptllk.allrskslLfl.GySfsDpnirelleellkesgn 115
                    + + + t  +Y ++l    +++ +++  a+ + +s Lf+ Gy+f+D++i++l++++l+  + 
  CCG92087.1 326 ctdDVLiYPTPLKYGQALGlPYSELFRRFGnAIAQPQSALFViGYGFGDDHINALIRQALAIPSF 390
                 9963334789999*99994344444444443777888**********************987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3245.70
//
Query:       CCG92088.1  [L=747]
Description: ATPase-like [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-24   85.0   0.0    3.7e-22   79.5   0.0    2.4  2  DUF87          Helicase HerA, central domain
      3e-09   36.6   0.0      1e-06   28.3   0.0    2.3  2  FtsK_SpoIIIE   FtsK/SpoIIIE family
    3.1e-09   36.2   0.0    5.7e-08   32.1   0.0    2.1  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
    2.6e-05   24.5   0.1        1.4    9.2   0.0    4.0  4  AAA_22         AAA domain
      8e-05   21.7   0.0     0.0012   17.9   0.0    2.1  2  AAA_10         AAA-like domain
     0.0018   16.9   0.0       0.21   10.2   0.0    2.1  2  DUF853         Bacterial protein of unknown function (DUF853)
     0.0023   18.3   0.0        3.9    7.8   0.0    2.7  2  AAA_16         AAA ATPase domain
     0.0091   16.4   0.0       0.39   11.2   0.0    2.5  2  AAA            ATPase family associated with various cellular
     0.0095   16.5   0.0      0.027   15.0   0.0    1.7  1  ABC_tran       ABC transporter
  ------ inclusion threshold ------
      0.013   15.9   0.0      0.032   14.6   0.0    1.6  1  AAA_19         AAA domain
      0.036   14.1   0.0      0.092   12.7   0.0    1.6  1  ResIII         Type III restriction enzyme, res subunit
      0.063   13.0   0.0        1.2    8.9   0.0    2.7  2  DEAD           DEAD/DEAH box helicase
      0.074   12.6   0.2       0.16   11.4   0.2    1.5  1  UvrD-helicase  UvrD/REP helicase N-terminal domain


Domain annotation for each model (and alignments):
>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0   2.7e-25   3.7e-22       2     151 ..     146     306 ..     145     371 .. 0.83
   2 ?    3.0   0.1     0.069        95     199     226 ..     524     551 ..     517     552 .. 0.86

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 2.7e-25
       DUF87   2 eiGrllsgsevpvyldlnklvtrHlAilgsTGsGKSntvavLleelle...kkgatililDpHGEYgkal..........ekllsekvkvitpspsakd 87 
                  iGr +  ++ +++++ + ++ +H Ai+gsTGsGKS t+a +++++++    k+++ +ilD +GEY + +              + k+ +i ++ s+++
  CCG92088.1 146 PIGRSAIFQDYDIKINPDAFFGKHAAIIGSTGSGKSCTIATIIQSIIKqasVKQTRFIILDTNGEYRTSFqkqnedkawaDADAAFKALYIPTD-STEK 243
                 68888889999************************************98877788***************888888888777777777777775.67** PP

       DUF87  88 kelkinpwsldpeelldlleeddkpaaavqrsvleealdqaka...keekeklssdepveklleelk 151
                 ++l i++w +d e++++l+      +  vqr vl +al++a++   ++e++    ++++ +++  l+
  CCG92088.1 244 EKLVIPYWFMDSEDFVRLFRA----SPGVQRPVLLNALSSARDseeGTENWLHVRQDIIMECRRILR 306
                 *********************....666899999999999998888888888888888888877777 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.069
       DUF87 199 kegkitiidlsgvdelaqqlvvsvilrr 226
                   ++++iidls + +++++ v+++i r 
  CCG92088.1 524 TRSNVVIIDLSLLASEVLENVTALIGRL 551
                 56789***************99999776 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   7.4e-10     1e-06      35      80 ..     158     208 ..     134     218 .. 0.81
   2 !    5.8   0.0    0.0054       7.5     164     202 ..     591     636 ..     555     654 .. 0.59

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 7.4e-10
                   GGGS-......SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT CS
  FtsK_SpoIIIE  35 lkkma.....shllvaGatgsGKStalntLilSlatthtPeeVqliliDyk 80 
                   +k ++      h  ++G+tgsGKS ++ t+i+S++  ++ ++ ++i++D  
    CCG92088.1 158 IKINPdaffgKHAAIIGSTGSGKSCTIATIIQSIIKQASVKQTRFIILDTN 208
                   33333447778**************************************86 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0054
                   ...................-----------B-----EEEEEEC-HH CS
  FtsK_SpoIIIE 164 e.......ritsLsnqgpsygvhvlvtagrelekrpslvvivderi 202
                   e           ++ +g +yg  ++v+++r +e  ++++++  ++i
    CCG92088.1 591 EedsisklVFERIAREGRKYGLGLVVASQRPSELSKTVLSQCNSFI 636
                   0443333222234455555555555555555555555555555555 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   4.2e-11   5.7e-08      16      66 ..     168     222 ..     162     231 .. 0.81
   2 ?    1.6   0.0     0.077   1.1e+02     261     288 ..     600     627 ..     593     649 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 4.2e-11
  TrwB_AAD_bind  16 qhilivGttGsGKtqalekll....rairargdraivlDltGafvsrfydegkdi 66 
                    +h++i+G+tGsGK+ ++  ++    +++  ++ r i+lD++G++   f ++++d 
     CCG92088.1 168 KHAAIIGSTGSGKSCTIATIIqsiiKQASVKQTRFIILDTNGEYRTSFQKQNEDK 222
                    7************9887666500005566667******************99985 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.077
  TrwB_AAD_bind 261 lksllaegRkfGgavvlglqsiaqlrev 288
                    +++++ egRk+G  +v++ q  + l ++
     CCG92088.1 600 FERIAREGRKYGLGLVVASQRPSELSKT 627
                    577899***************9999765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0015       2.1       6      29 ..     168     191 ..     167     225 .. 0.78
   2 ?   -0.6   0.0       1.1   1.5e+03      15      71 ..     267     350 ..     264     372 .. 0.54
   3 ?    0.5   0.0      0.48   6.6e+02      41      88 ..     409     463 ..     387     470 .. 0.73
   4 !    9.2   0.0     0.001       1.4      77     112 ..     546     598 ..     481     623 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0015
      AAA_22   6 gilvvtGesGtGKTtllrrlleql 29 
                 ++ +++G +G+GK+ +++++ ++ 
  CCG92088.1 168 KHAAIIGSTGSGKSCTIATIIQSI 191
                 6789*************9998876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.1
      AAA_22  15 GtGKTtllrrlleqldeeakaee..........erpevvfvtlpsst....sskdllrellralglelka.............e 71 
                 G+ + +ll+ l +  d e+  e+          e++++++ +   +t    s ++l+  l   +++++                
  CCG92088.1 267 GVQRPVLLNALSSARDSEEGTENwlhvrqdiimECRRILRLCYGTETknaqSIRQLCDGLIIHIEEPAIVdhlrllsqhypdiT 350
                 555556666666666665555556666666666788877444444442224555555555555555544455444444444444 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.48
      AAA_22  41 evv...fvtlpsstsskdl.lrellralglelka...erlsseellealeqalra 88 
                 +v+   + ++p   s + + +r+l +a++++  +   +r++ + ++ ++++ l++
  CCG92088.1 409 TVLstaSADCPRFFSKSAFrYRNLEHAMTRDEVSslqARDNCSTMIMRIYRLLED 463
                 33355589999999999999********999999776666666666667666665 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.001
      AAA_22  77 ell.ealeqalrarav..........ielliiDEaqh.lr..s...eealeeL 112
                 +l+ +++++ l++ ++          +++l++DEaq+ +r  +   e+ +++L
  CCG92088.1 546 ALIgRLIHEFLQRLSDpvsgvgrgeyPVVLVLDEAQNyIRegRkteEDSISKL 598
                 333344444444444444455559999**********7766523345444444 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   8.6e-07    0.0012      22      99 ..     168     256 ..     164     273 .. 0.75
   2 ?    1.3   0.0     0.096   1.3e+02     260     290 ..     598     628 ..     573     641 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 8.6e-07
      AAA_10  22 sasliiGdlGnGKSvlakllvl....yisllggkaliiDpkke.rekfketl..pe...iakkinvvtLdse.eenegvLdPlvllkee 99 
                  +++iiG++G GKS ++ +++     ++s+ + + +i+D   e r  f+++   ++       ++ + +  + +e+e +  P+ ++++e
  CCG92088.1 168 KHAAIIGSTGSGKSCTIATIIQsiikQASVKQTRFIILDTNGEyRTSFQKQNedKAwadADAAFKALYIPTDsTEKEKLVIPYWFMDSE 256
                 589************998876511116677789**********7777877764422433445688888844437777888899999887 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.096
      AAA_10 260 kllkelvRiGRsynaavylvtqsadDvlkee 290
                  + + + R GR+y   ++ ++q ++ ++k  
  CCG92088.1 598 LVFERIAREGRKYGLGLVVASQRPSELSKTV 628
                 4678899****************99998865 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0077        11      20      46 ..     166     192 ..     153     214 .. 0.83
   2 !   10.2   0.0   0.00015      0.21     234     322 ..     549     641 ..     525     655 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0077
      DUF853  20 anrhGliaGatGtGktvtLqvlaesls 46 
                   +h  i G+tG Gk  t+ ++ +s+ 
  CCG92088.1 166 FGKHAAIIGSTGSGKSCTIATIIQSII 192
                 568****************99999875 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00015
      DUF853 234 atfLlWllseLfeeLPevGdldkPklvfffdeahLLfndapkallekv.....eqvvrLirskGvGvyfvtqnPldlPdtvLaqLGnrvqhalr 322
                    +  +l  L + +  vG  + P  v+ +dea     +  k+  + +     e++ r  r  G G+   +q P++l +tvL+q  + + h l+
  CCG92088.1 549 GRLIHEFLQRLSDPVSGVGRGEYPV-VLVLDEAQNYIREGRKTEEDSIsklvfERIAREGRKYGLGLVVASQRPSELSKTVLSQCNSFIVHRLQ 641
                 5555555666666667778888884.7888999999999888877766222346666778899**********************999999875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0047       6.4      27      63 ..     170     202 ..     154     308 .. 0.73
   2 !    7.8   0.0    0.0028       3.9     107     146 ..     543     582 ..     517     609 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0047
      AAA_16  27 vllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                   ++G  G+GKs  + ++ +++ k+    ++ k +++
  CCG92088.1 170 AAIIGSTGSGKSCTIATIIQSIIKQ----ASVKQTRF 202
                 6799******************999....44444333 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0028
      AAA_16 107 avpelagaeasrllellkrllallsrderplvlvlDdlqw 146
                  v +l g + + +l+ l++ ++   r+e p+vlvlD++q 
  CCG92088.1 543 NVTALIGRLIHEFLQRLSDPVSGVGRGEYPVVLVLDEAQN 582
                 45556666669999999999*99999999*********94 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.13   1.8e+02       3      29 ..     172     205 ..     170     232 .. 0.68
   2 !   11.2   0.0   0.00028      0.39      38     128 ..     551     636 ..     519     640 .. 0.66

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.13
                 EESSTTSSHHHHHHHHHHHH.......THEEEEE CS
         AAA   3 lyGppGtGKTllakavakel.......gveflei 29 
                 ++G  G GK+ ++  +++++       +++f+ +
  CCG92088.1 172 IIGSTGSGKSCTIATIIQSIikqasvkQTRFIIL 205
                 6899******999999999643333322444443 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00028
                 STTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEE CS
         AAA  38 yvgesekkirelfkeakeka.......kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrki 128
                 ++ e  +++++                 p++l++DE+ + +++     +  ee+ +++L+ e    + ++  + +++a++rp++l++ +l + +++ i
  CCG92088.1 551 LIHEFLQRLSDP-------VsgvgrgeYPVVLVLDEAQNYIREG---RK-TEEDSISKLVFERIAREGRKYGLGLVVASQRPSELSKTVL-SQCNSFI 636
                 333444444444.......2344444478***********9999...44.4555555555555555555566*****************9.8888766 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.9e-05     0.027      11      38 ..     167     194 ..     158     229 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
                 TSEEEEEESTTSSHHHHHHHHTTSS--S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  11 gekvaivGenGaGKStLlkllagllkpt 38 
                 g+  ai+G++G+GKS  ++++++   ++
  CCG92088.1 167 GKHAAIIGSTGSGKSCTIATIIQSIIKQ 194
                 8999***********9999999877654 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.3e-05     0.032      10      48 ..     167     205 ..     160     222 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.3e-05
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillv 48 
                  k+ ++++  G+GK+ ++ +i++ ++++ +vk  +++++
  CCG92088.1 167 GKHAAIIGSTGSGKSCTIATIIQSIIKQASVKQTRFIIL 205
                 57889**************************98888876 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.6e-05     0.092      25      61 ..     168     204 ..     155     232 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.6e-05
                 SEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEE CS
      ResIII  25 krglikmaTGtGKTlvaaklierllkkgkeekflflv 61 
                 k++ i   TG+GK+ ++a +i+++ k+++ +++ f++
  CCG92088.1 168 KHAAIIGSTGSGKSCTIATIIQSIIKQASVKQTRFII 204
                 5788999*******************99998555543 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00086       1.2      10      53 ..     163     205 ..     155     558 .. 0.74
   2 ?    1.3   0.0      0.18   2.5e+02     124     141 ..     574     591 ..     532     609 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00086
                 HHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  10 lilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkaliv 53 
                  +  g++  + + TGsGK+   +  ++q+++++ + ++++ +i+
  CCG92088.1 163 DAFFGKHAAIIGSTGSGKSCT-IATIIQSIIKQASVKQTRFIIL 205
                 55568899999*******977.5667777777744444455444 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.18
                 EEEEETHHHHHHTTTHHH CS
                 xxxxxxxxxxxxxxxxxx RF
        DEAD 124 flVlDEadrlldqgfsdf 141
                 +lVlDEa+++  +g++ +
  CCG92088.1 574 VLVLDEAQNYIREGRKTE 591
                 69********99987655 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00012      0.16      11      50 ..     165     204 ..     157     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                    S-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEE CS
  UvrD-helicase  11 slggpilveAsAGsGKTfvlaerilrlikeeeiepdrilv 50 
                     +g++  ++ s GsGK+ ++a  i   ik+++++++r ++
     CCG92088.1 165 FFGKHAAIIGSTGSGKSCTIATIIQSIIKQASVKQTRFII 204
                    4788999***************************999665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 4817.06
//
Query:       CCG92089.1  [L=197]
Description: hypothetical protein MFUM_310010 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1324.84
//
Query:       CCG92090.1  [L=74]
Description: hypothetical protein MFUM_310011 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 482.62
//
Query:       CCG92091.1  [L=179]
Description: Phosphohistidine phosphatase SixA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-09   37.6   0.0    1.2e-07   31.6   0.0    2.0  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   6.6e-12   1.2e-07      21      77 ..      18      78 ..       7      79 .. 0.84
   2 !    4.1   0.0    0.0018        32     129     185 ..      87     140 ..      82     148 .. 0.71

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 6.6e-12
                ----B-HHHHHHHHHHHHH..HTTS---EEEE-SSHHHHHHHHHHHHCTT..--EEE-GGG CS
  His_Phos_1 21 tdvpLteeGreqAealaer..lagepidaiysSplkRarqTaeliaealg..lpveldegL 77
                 d pL ++Gre A +++++  +ag+++++i++Sp  R rqTae++a+al   ++++l +gL
  CCG92091.1 18 PDRPLAARGREVALQVGKFlkFAGISPKKIFHSPKDRSRQTAEIVAKALSrqIKLQLLKGL 78
                6899**************944456999999*******************966666666665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0018
                 HHHHHHHHTTTSEEEEEE-HHHHHHHHHHHH.T--GGGGGGB---TT-EEEEEE-SS- CS
  His_Phos_1 129 aleelaarhegetvlvVsHggvirallarll.glpleelrrleldnaslsvlefdegg 185
                  l+e+++ +e+   ++V H  ++  l+ rll + +++ +  +++++as  +l ++e++
  CCG92091.1  87 LLKEIKKIEED--SIIVGHEPTLSKLAVRLLvKSKVSPF--FQMEPASCLWLYYNEEE 140
                 55666666655..79*******99999998868888877..66677777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1333.00
//
Query:       CCG92092.1  [L=524]
Description: Permease of the major facilitator superfamily [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-58  198.5  35.9    1.4e-58  198.5  35.9    1.6  2  MFS_1     Major Facilitator Superfamily
    4.5e-19   68.6   4.6    4.5e-19   68.6   4.6    2.6  3  Sugar_tr  Sugar (and other) transporter
    0.00011   21.0   2.1    0.00011   21.0   2.1    3.4  4  MFS_2     MFS/sugar transport protein
    0.00095   17.7   9.9    0.00095   17.7   9.9    2.2  3  TRI12     Fungal trichothecene efflux pump (TRI12)
     0.0041   15.6  21.8      0.073   11.4   7.5    2.7  3  MFS_3     Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.5  35.9   3.9e-62   1.4e-58       1     352 [.      24     419 ..      24     420 .. 0.92
   2 ?   -1.3   0.1      0.22   7.9e+02     242     273 ..     489     520 ..     460     523 .. 0.64

  Alignments for each domain:
  == domain 1  score: 198.5 bits;  conditional E-value: 3.9e-62
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlg 98 
                 ++la+f+  l+ +il++alp ++a  l +s s++ ++lt y +  av  + + +l+  fGr+r+ll+++ lf ++++++    ++l +l+++rvlqG+g
  CCG92092.1  24 VMLATFMEVLDTTILNVALP-YIAGGLSASNSQATWVLTSYLVSNAVVLPMTDWLGRTFGRKRLLLACISLFTISSVMCGgA-PNLGALIFARVLQGAG 120
                 589*****************.******************************************************5555523.8888************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 +g+l p+++a++ + fp+e+rg+a+gl+++g+ +++ilgp++gg+l+++l+Wr++f+i+ +v+++a++    + +e+pp  +r+s+k++          
  CCG92092.1 121 GGGLQPISQAILLESFPPEKRGQAMGLFALGVVVAPILGPVFGGWLTDNLNWRWCFFINLPVGIFAIIA-SYFTVEDPPYLRRNSEKKLDilgfsflcl 218
                 ******************************************************************884.44445666666666666666********* PP

       MFS_1 189 ........................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllag 247
                                                         + + p plv+ +++++ +++  ++++ +++++++++++l+ lpl+lq+   ++ ++++g
  CCG92092.1 219 wlgclqvlldkgqednwfdaiwlrwmgglslfgmicfifrELKTPNPLVD-LRIFKDKNFT-VAVFEVFIVGVVLYATLSGLPLFLQTLISYT-AYQSG 314
                 **************************999999999999999999999999.7777777755.467777777789999****************.8**** PP

       MFS_1 248 lllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntags 346
                 l+++  +++++++a++agrl+  ++ r +  l++++l+++++ + ++++   ++ ++++ ++ G+g+ fvf++l+++a+  + +e+ g+a+glfn++++
  CCG92092.1 315 LAISPRGIGAVAGAMIAGRLLGLISGRLIVALGFIFLAISSFQIGFFNLEIAKLNIIIPNIINGIGAPFVFIPLTTAAVITLKQEQIGAATGLFNLFRN 413
                 **************************99999999999999999999999988888888***************************************** PP

       MFS_1 347 lggalg 352
                 +gg++g
  CCG92092.1 414 IGGSIG 419
                 *****9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.22
       MFS_1 242 glllaglllallalvgailallagrlsdrlgr 273
                 +++++  +++ +++++++la+l+++ s+++g+
  CCG92092.1 489 AYMEIFQVMGWICVFSIPLAFLLAKDSKKTGP 520
                 46666666666666777776666666666665 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   4.6   1.3e-22   4.5e-19      18     204 ..      37     206 ..      20     213 .. 0.88
   2 ?   -2.2   0.0      0.39   1.4e+03     328     361 ..     214     257 ..     201     265 .. 0.66
   3 ?    0.3  10.4     0.069   2.5e+02      45     175 ..     310     439 ..     277     514 .. 0.76

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 1.3e-22
                 CGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHH CS
    Sugar_tr  18 vigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigv 116
                 +++++l  ++     gls        s+++ ++++ ++lv  ++   ++ +lg +fGRk  ll+++ lf i++v+++ a+   ++ +li++Rvl G g 
  CCG92092.1  37 ILNVALPYIA----GGLSA-------SNSQATWVLTSYLVSNAVVLPMTDWLGRTFGRKRLLLACISLFTISSVMCGGAP---NLGALIFARVLQGAGG 121
                 4444444444....22222.......556668************************************************...9*************** PP

                 HHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-H CS
    Sugar_tr 117 GlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgke 204
                 G+ + ++   + E  p+++Rg+ ++l+ l++++  +++ +fg  l ++ n   wr+ ++++l   ++ +i+ +f  E P yl  + ++
  CCG92092.1 122 GGLQPISQAILLESFPPEKRGQAMGLFALGVVVAPILGPVFGGWLTDNLN---WRWCFFINLPVGIFAIIASYFTVEDPPYLRRNSEK 206
                 *********************************************99999...****************************9887755 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.39
                 HHHHHHHH..HHHHTTSS..............CHHHHHHHHHHHH CS
    Sugar_tr 328 aicfvilgivalllvaks...........kaasivaivfialfia 361
                 +++++ lg +  +l +k             +++++++++++ fi+
  CCG92092.1 214 SFLCLWLG-CLQVLLDKGqednwfdaiwlRWMGGLSLFGMICFIF 257
                 44444444.222222222234688888888999999999999986 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.069
                 ..HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS..-SCCHHHHHH CS
    Sugar_tr  45 svlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiA..pkklRgalvs 141
                 + +sgl  s   +Ga++G+++ag l   ++ + + + + +++ i+++ +++ + + +   +i+  ++ Gig+    v++P++++ +   +++  ga ++
  CCG92092.1 310 AYQSGLAISPRGIGAVAGAMIAGRLLGLISGRLIVALGFIFLAISSFQIGFFNLEIAKLNIIIPNIINGIGA--PFVFIPLTTAAVItlKQEQIGAATG 406
                 458899999999*****************************************99999999*******9865..5677888877766345556699999 PP

                 HHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHH CS
    Sugar_tr 142 lyqlaitfGilvaaifglgl.nktsnadgwrillg 175
                 l++l+  +G  +++ +   + ++  +    +i l 
  CCG92092.1 407 LFNLFRNIGGSIGTSMVQTFiQRLAQ--AHQIILV 439
                 99999999888776555555244444..4445554 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   2.1     3e-08   0.00011     227     339 ..      22     132 ..      14     136 .. 0.83
   2 ?   -0.5   0.0     0.098   3.5e+02     149     192 ..     150     193 ..     140     219 .. 0.49
   3 ?   -7.4  12.2         5   1.8e+04     220     377 ..     271     423 ..     266     432 .. 0.70
   4 ?   -0.8   1.9      0.12   4.4e+02     122     164 ..     391     480 ..     375     517 .. 0.62

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3e-08
       MFS_2 227 lillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviag 325
                 l ++l+ ++++l +++ln +l Y +     ++s+a+++l+   +s+++++p+  +l + +g+k++ l++++l  + +v++  +   nl +++++ v+ g
  CCG92092.1  22 LSVMLATFMEVLDTTILNVALPYIAGGLSASNSQATWVLTSYLVSNAVVLPMTDWLGRTFGRKRLLLACISLFTISSVMCGGA--PNLGALIFARVLQG 118
                 346777788899999***********9999************************************99999888888777666..67777777777777 PP

       MFS_2 326 fgvgvaallpwsml 339
                  g g+++ +  ++l
  CCG92092.1 119 AGGGGLQPISQAIL 132
                 77777777766665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.098
       MFS_2 149 laailafllvlilgglkserkgylifaliialLmllgviivvlg 192
                 l+ ++a++l  ++gg  +++ ++++  +i   + ++++i+++++
  CCG92092.1 150 LGVVVAPILGPVFGGWLTDNLNWRWCFFINLPVGIFAIIASYFT 193
                 33333333333333333344444444444444444444444333 PP

  == domain 3  score: -7.4 bits;  conditional E-value: 5
       MFS_2 220 vfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvv.tisallgiplwqplakrlgkkntyllgalltivllvlvlll.qpsnlll 316
                 +f+++ f + ++ ++++ + l+ + + l ++l+  +   +  s +++ +  i+a++g++++ +l   ++ + +++lg++++++ ++ + ++  +   l 
  CCG92092.1 271 IFKDKNFTVAVFEVFIVGVVLYATLSGLPLFLQTLISYTAYQSGLAISPrGIGAVAGAMIAGRLLGLISGRLIVALGFIFLAISSFQIGFFnLEIAKLN 369
                 788999998888888888889999999999999999988888888888889999999****99999999998888887776665544444412555555 PP

       MFS_2 317 flvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvs 377
                  ++  +i g+g + ++++p  ++a v+   +      + g +++++ ++ ++++ ig++++
  CCG92092.1 370 IIIPNIINGIG-APFVFIPL-TTAAVITLKQ-----EQIGAATGLFNLFRNIGGSIGTSMV 423
                 66667777776.44444443.3344444333.....3556666666666666666666665 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.12
       MFS_2 122 vpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgg...............................................l 164
                 ++v+t ++++   +t+  +++ ++gg +++ ++ +++++l++                                               +
  CCG92092.1 391 AAVITLKQEQIGAATGLFNLFRNIGGSIGTSMVQTFIQRLAQahqiilvgyytpdnlnylsrfsgiesylamhngsvqgasqalkvlysT 480
                 567788888888888888888888888888888888888887555555555555555555555555555555555555555555555444 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   9.9   2.6e-07   0.00095      58     229 ..      31     207 ..       8     353 .. 0.73
   2 ?   -2.1   0.8      0.25   9.1e+02      53     116 ..     284     349 ..     271     386 .. 0.65
   3 ?   -0.3   0.1     0.075   2.7e+02      63     102 ..     403     443 ..     373     482 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.6e-07
       TRI12  58 fvlqas..asalpnilqdvgqsensslf.stlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagaspl 153
                  vl+++    alp i   +  s+ ++ +  t + + +av + +   l   fgr+ ++++   l  + +++   a ++ +l+ a  l g   g  g  p+
  CCG92092.1  31 EVLDTTilNVALPYIAGGLSASNSQATWvLTSYLVSNAVVLPMTDWLGRTFGRKRLLLACISLFTISSVMCGGAPNLGALIFARVLQGAGGG--GLQPI 127
                 35555422579*********999987652689999************************99999999999999************9996655..44444 PP

       TRI12 154 fvgelm...s..nktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivv.wyyppsfaqlhgkk 229
                     l+      ++ + +gl+  ++ vvv   l+p +g  l+ + +wrw f+i + +   a++        pp +++   kk
  CCG92092.1 128 SQAILLesfPpeKRGQAMGLF--ALGVVVAPILGPVFGGWLTDNLNWRWCFFINLPVGIFAIIASYFtVEDPPYLRRNSEKK 207
                 333333111311345666766..5667888889********************99877766554332023455555544444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.25
       TRI12  53 vvatyfvlqasasalpnilqdvgq..sensslfstlwttgqavsilvmgrltdrfgrrpfvilthi 116
                 v    +vl a+ s lp  lq +    + +s+l  +   +g     ++ grl   +  r +v l  i
  CCG92092.1 284 VFIVGVVLYATLSGLPLFLQTLISytAYQSGLAISPRGIGAVAGAMIAGRLLGLISGRLIVALGFI 349
                 444456777777777777776533113345555566666766667777777766666666655555 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.075
       TRI12  63 sasalpnilqdvgqsensslfstlw.ttgqavsilvmgrlt 102
                 +a+ l n+++++g s  +s++ t+   + qa  i+++g  t
  CCG92092.1 403 AATGLFNLFRNIGGSIGTSMVQTFIqRLAQAHQIILVGYYT 443
                 46678888888888888888887641578888888888766 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   4.9   4.9e-05      0.18      15     182 ..      24     186 ..      11     198 .. 0.85
   2 !   11.4   7.5     2e-05     0.073     221     305 ..     278     362 ..     273     386 .. 0.89
   3 ?   -1.6   0.0      0.18   6.4e+02     106     164 ..     370     424 ..     362     436 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4.9e-05
       MFS_3  15 iWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlli 113
                 + +a+ +  l t i +va  ++   +sas+ +   v  +  +   ++  ++  l  +f r+++lla  +l  ++sv+      lg     +l+   +l 
  CCG92092.1  24 VMLATFMEVLDTTILNVALPYIAGGLSASNSQATWVLTSYLVSNAVVLPMTDWLGRTFGRKRLLLACISLFTISSVMCGGAPNLG-----ALIFARVLQ 117
                 557788888888899999999999999999999999888877766666678899999**************99999976655555.....688889999 PP

       MFS_3 114 giGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylal 182
                 g G    +P  qA++ e  + ++  +A+ L ++g+ +a   GP  gG l   +   + f +n    ++ 
  CCG92092.1 118 GAGGGGLQPISQAILLESFPPEKRGQAMGLFALGVVVAPILGPVFGGWLTDNLNWRWCFFINLPVGIFA 186
                 9999999******************************************99999999988886444333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 2e-05
       MFS_3 221 kavlvRaalFglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalas 305
                  +++   ++ g+   a l+ LPl  +  ++  a   G+ ++  G+GA++ga++  rL   +s   +v+l ++ lA+  +++++ +
  CCG92092.1 278 TVAVFEVFIVGVVLYATLSGLPLFLQTLISYTAYQSGLAISPRGIGAVAGAMIAGRLLGLISGRLIVALGFIFLAISSFQIGFFN 362
                 566777888999999**************************************************************99998865 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.18
       MFS_3 106 llaltlligiGaal.ndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlva 164
                 +++  ++ giGa +   P   A+v   +k++++ aA  L     n+ R +G  +g  +v 
  CCG92092.1 370 IIIPNIINGIGAPFvFIPLTTAAVIT-LKQEQIGAATGLF----NLFRNIGGSIGTSMVQ 424
                 66777788888875156777777764.6888999999885....5666666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3634.98
//
Query:       CCG92093.1  [L=424]
Description: enolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.6e-117  390.5   0.0   6.7e-117  389.9   0.0    1.1  1  Enolase_C  Enolase, C-terminal TIM barrel domain
      8e-57  191.0   0.3    1.4e-56  190.2   0.3    1.4  1  Enolase_N  Enolase, N-terminal domain
    9.7e-06   25.3   0.0    1.7e-05   24.5   0.0    1.3  1  MR_MLE_C   Enolase C-terminal domain-like
  ------ inclusion threshold ------
      0.074   12.2   0.0       0.14   11.3   0.0    1.4  1  MAAL_C     Methylaspartate ammonia-lyase C-terminus


Domain annotation for each model (and alignments):
>> Enolase_C  Enolase, C-terminal TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  389.9   0.0  1.5e-120  6.7e-117       2     287 ..     142     422 ..     141     423 .. 0.98

  Alignments for each domain:
  == domain 1  score: 389.9 bits;  conditional E-value: 1.5e-120
                 -EE-EE-EEEEE-GGGSSSS--SSEEEEE-TT-SSHHHHHHHHHHHHHHHHHHHHHCC.GGGG-B-TTS-B----SSHHHHHHHHHHHHHHCT-TC..T CS
   Enolase_C   2 lvlPvPalnvinGGshagnklalqefmilPvgassfkealrlGaevyhklksvlkkkygksatnvGdeGGfaPnlqsnkealdliveaiekaGykg..k 98 
                 ++lP+P+ nvinGG h++  l++qefmi+P ga+sfke lr G+e++h+lk +l++k     t +GdeGGfaP ++s+++a+dl+ ea e+aGy +  +
  CCG92093.1 142 ITLPIPFANVINGGVHSDAPLDFQEFMIVPKGAPSFKEGLRYGVEIFHTLKTLLQDKK--LGTGIGDEGGFAPVISSADQAFDLLIEATERAGYIPgkD 238
                 68*****************************************************998..99********************************98889 PP

                 BEEEEE--GGGCEETCTTEEECTTTTTT..GGCEEEHHHHHHHHHHHHHHS-EEEEES-S-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHH CS
   Enolase_C  99 vkialdvassefykekdkkydldfkeeesdkskkltseqladlykelvkkyPivsiedpldeddweawkklteelgdkvqivGddltvtnpkrlkeaie 197
                 v  a+d+a++e+++e+ k y ++  +     + kl +++l +ly+el+kkyP+vsied+++e+dw++wk+lt++lg  +q+vGddl+vtn + l+++i+
  CCG92093.1 239 VFYAMDAAATELFEESSKIYVFKKSQ-----HIKLPASHLIELYRELAKKYPLVSIEDGMAESDWDGWKQLTQQLGTSLQLVGDDLFVTNKEFLEQGIK 332
                 ****************9999987665.....7899**************************************************************** PP

                 CT--SEEEE-HHHH-SHHHHHHHHHHHHHTT-EEEEE--SC--S--HHHHHHHHCT-SEEE---S-SHHHHHHHHHHHHHHHHHGCC-EE CS
   Enolase_C 198 kkaanalllkvnqiGsltesleavklakeagygvvvshrsGetedttiadlavglsaGqiktGaparserlakynqllrieeelgekaky 287
                 +k+ana+l+kvnq+G+lte++++v+ ak+ gy v+vshrsGe+ed +iadl+v+l+aGqiktG+ +rs+rl kynqllrieeelge+a+y
  CCG92093.1 333 EKVANAILIKVNQVGTLTETFHTVETAKRHGYKVMVSHRSGESEDPFIADLSVALNAGQIKTGSFCRSDRLCKYNQLLRIEEELGESAIY 422
                 ****************************************************************************************99 PP

>> Enolase_N  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.2   0.3   3.1e-60   1.4e-56       1     131 []       6     136 ..       6     136 .. 0.99

  Alignments for each domain:
  == domain 1  score: 190.2 bits;  conditional E-value: 3.1e-60
                 EEEEEEEEEE-TTS-EEEEEEEEETTC-EEEEE--B-BSSSSSS-B----SSTTSGGGT--HHHHHHHHHTHHHHHTTSBTT-HHHHHHHHHHHH-STT CS
   Enolase_N   1 IkkvkareildSrGnpTvevevttedgalgraavpsGaStgekealelrDgdkkrylgkgvekavenvnekiapaligldvtdqeeiDkllielDgten 99 
                 I+kv ar++ldSrGnpTve+e+++e+g+ +ra+vpsGaStg++ealelrDg+k+ry+gk v+ka++n++++iap+lig+d+++q+eiD++li+lDg++n
  CCG92093.1   6 IRKVLARQVLDSRGNPTVEAEIHLESGIKARAIVPSGASTGSNEALELRDGNKERYGGKEVSKAIRNITKTIAPELIGKDAANQAEIDRILIDLDGSKN 104
                 899************************************************************************************************ PP

                 -TTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH CS
   Enolase_N 100 ksklGaNailavSlAvakaaAkakelplyryl 131
                 ks lGaNailavSl+va+aaA a+++plyr+l
  CCG92093.1 105 KSVLGANAILAVSLCVARAAAMAEGIPLYRHL 136
                 ******************************97 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   3.8e-09   1.7e-05      61     170 ..     272     386 ..     263     414 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 3.8e-09
                 HHHHHHHHHGG.GTESEEESSSSTTTHHHHHHHHHHHH..SSEEEESTTSSSHHHHH.HHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEB CS
    MR_MLE_C  61 tAirvarelee.ldllwlEEPvppeddleglaelrara..sipiaagEslysradfr.elleagavdivqpdvsrvgGitearkvaalaeafgvpvapH 155
                   i++ rel++ + l  +E+ +    d++g ++l+++   s++++++    + ++f  + ++++++ ++ ++v++vg +te+  +++ a+ +g++v++ 
  CCG92093.1 272 HLIELYRELAKkYPLVSIEDGMAE-SDWDGWKQLTQQLgtSLQLVGDDLFVTNKEFLeQGIKEKVANAILIKVNQVGTLTETFHTVETAKRHGYKVMVS 369
                 578999***888***********9.57********833569*******999977765288***********************************9877 PP

                 S.CS.SHHHHHHHHHHH CS
    MR_MLE_C 156 s.gs.gglglaaslhla 170
                 +  + +   ++a l++a
  CCG92093.1 370 HrSGeSEDPFIADLSVA 386
                 62222444455555554 PP

>> MAAL_C  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.1e-05      0.14     130     204 ..     302     377 ..     267     394 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.1e-05
      MAAL_C 130 reklkekgikvelvaDeWcntled.irefvdaeaadlvqiktPDlGginntieavlyckekgvgaylGGscnetdv 204
                 ++  ++ g++++lv D+   t ++ +++ + ++ a+++ ik+  +G++++t + v  +k++g ++++   + e + 
  CCG92093.1 302 KQLTQQLGTSLQLVGDDLFVTNKEfLEQGIKEKVANAILIKVNQVGTLTETFHTVETAKRHGYKVMVSHRSGESED 377
                 344456789999**99976665552788899********************************9998877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2938.36
//
Query:       CCG92094.1  [L=124]
Description: Septum formation initiator [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-15   55.0   0.0    7.6e-15   54.5   0.0    1.2  1  DivIC      Septum formation initiator
     0.0039   16.5   1.2     0.0049   16.1   1.2    1.1  1  DUF2046    Uncharacterized conserved protein H4 (DUF2046)
  ------ inclusion threshold ------
      0.022   14.7   0.0      0.031   14.3   0.0    1.2  1  FtsL       Cell division protein FtsL
       0.21   12.2   0.9        0.7   10.5   0.2    1.9  2  OAD_gamma  Oxaloacetate decarboxylase, gamma chain


Domain annotation for each model (and alignments):
>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   1.7e-18   7.6e-15       1      77 [.      22      98 ..      22     100 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 1.7e-18
                XXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       DivIC  1 llllfllllifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerARselglvkpgEtvyrv 77
                +l+lf+lll ++   ++++ ql+++ + l +e+a+   +n+eL  ++ +Lk+d+++ie++AR++l++ kpgE+++r+
  CCG92094.1 22 FLGLFALLLSIFIPIIRKIDQLEKKKELLAKEYAEAELKNKELSCKLHLLKHDPSFIERIARDRLNMGKPGEIIFRF 98
                7899***********************************************************************97 PP

>> DUF2046  Uncharacterized conserved protein H4 (DUF2046)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.2   1.1e-06    0.0049      83     124 ..      36      76 ..      32      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-06
     DUF2046  83 llkkiqalkkeketlalnyeqeeefltndlsrklsqlrqekv 124
                 +++ki++l+k ke la++y  e e+   +ls kl+ l+++  
  CCG92094.1  36 IIRKIDQLEKKKELLAKEYA-EAELKNKELSCKLHLLKHDPS 76 
                 689****************6.7889999*********99865 PP

>> FtsL  Cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     7e-06     0.031      11      87 ..      15      91 ..       8      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7e-06
        FtsL 11 svgkvlllllllvlvsavavvlithqtRqlvselekllserdkLeeewrnLlLEestls.ahsrvesiAreqLkMkrp 87
                +  k+l++l l++l+ ++ + +i  +  ql +++e l +e  + e ++++L    + l  ++s +e+iAr+ L+M  p
  CCG92094.1 15 QSTKLLIFLGLFALLLSIFIPIIR-KIDQLEKKKELLAKEYAEAELKNKELSCKLHLLKhDPSFIERIARDRLNMGKP 91
                567899999999999999999988.8899999999999999999999999*9999988636899***********887 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00016       0.7      18      53 ..      27      62 ..      19      84 .. 0.73
   2 ?    0.4   0.0      0.23     1e+03      32      49 ..     105     122 ..      94     124 .] 0.45

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
   OAD_gamma 18 LilLslvislfskiikkkakkkkkkakaaaaaaaaa 53
                 +lLs++i +++ki ++++kk+  +++ a+a+ +++
  CCG92094.1 27 ALLLSIFIPIIRKIDQLEKKKELLAKEYAEAELKNK 62
                357788888889988888888877777666665544 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.23
   OAD_gamma  32 ikkkakkkkkkakaaaaa 49 
                 +  k+  +k+++k++ ++
  CCG92094.1 105 PLNKKSVNKRENKEPVEK 122
                 444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1112  (0.0620224); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 785.43
//
Query:       CCG92095.1  [L=364]
Description: Coproporphyrinogen III oxidase or related Fe-S oxidoreductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-24   85.3   0.0      1e-23   84.5   0.0    1.4  1  Radical_SAM  Radical SAM superfamily
    9.2e-05   22.4   0.3    0.00025   21.0   0.3    1.8  1  HemN_C       HemN C-terminal domain
  ------ inclusion threshold ------
      0.016   15.5   0.0      0.028   14.7   0.0    1.4  1  Fer4_12      4Fe-4S single cluster domain
      0.017   15.3   0.0       0.03   14.4   0.0    1.4  1  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   2.3e-27     1e-23       3     165 ..       9     172 ..       7     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 2.3e-27
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHH..HHTTSEEEEEESSTGGGS.TTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelk..aekgvkevilgggeplly.pdfvellerlaklavpgiritvetngtlpdeeklerl 97 
                  ++++C+  C++C ++ t    ++   l +e +++ev++lk  ++ + k+v +ggg+p+l  +++++ l+ + +++ +  ++t+e+n+ +++e k+++ 
   CCG92095.1   9 HFPFCAIICPYCGFYVT-IGKRKDIALLTEALIREVEILKdyYSLDPKTVYIGGGTPSLAkSEEIKQLLSILRKE-NLQELTIEANPRTITEQKAAEW 104
                  789*************9.88999999999**********9955555***********997544455555555553.9********************* PP

                  HHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET.EEEEEEEBTTTSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  98 lelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikr.vvdrivglpGendeeleelle 165
                  +e gv+rvs+g+++ ++ + l l  r+h +++v++++ +lr+agi++ + d+i+g+pG+  + l++ l+
   CCG92095.1 105 KEVGVNRVSVGAQSMNEQDLLILG-RRHKPKDVVDSVYLLRKAGIENiNLDFIFGIPGQDLQSLKQSLQ 172
                  ******************777777.99********************************9999988776 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.3   5.7e-08   0.00025       8      66 .]     303     353 ..     296     353 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5.7e-08
      HemN_C   8 eEeiilgLRlreGldlaafeqrfgldleellaaaleklqeqGLLeldggrlrltprGrl 66 
                 +E i+lgLR+++G+ l+ f q          + ++++l  +GL  + g+r++lt+rG+l
  CCG92095.1 303 KEKIFLGLRTNQGVALSYFGQ----K----EREVIQWLVFEGLGRIVGERFVLTRRGLL 353
                 699**************9555....3....4899***********************85 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.3e-06     0.028      14     106 ..      12     106 ..       3     129 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.3e-06
     Fer4_12  14 gCnlsCkgCfnketwsfksgkeftkelleeiiedlkkesi...egltllGGEPllpenaeallelvkevkeekpekdiwlytgytleelskkekee 106
                  C + C++C    t   ++     +e+l + +e lk+++    + + + GG P+l ++ e++ +l+  +++e++++  ++ + +t+ e +++e++e
  CCG92095.1  12 FCAIICPYCGFYVTIGKRKDIALLTEALIREVEILKDYYSldpKTVYIGGGTPSL-AKSEEIKQLLSILRKENLQELTIEANPRTITEQKAAEWKE 106
                 59999****8777776666666655555555688989887788999999******.999***************9999**9999999988775555 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   6.7e-06      0.03       2     102 ..       7     105 ..       6     120 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.7e-06
     Fer4_14   2 fvrlsgCnlsCkgCdnketwkselgkpqteelleqilk.dlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletngtleielektp 99 
                 ++ +  C + C+ C    t  ++       e l ++++  ++++  +++ + + GG P   ++ +e+ +l++ l++e    + ++e n     e + + 
  CCG92095.1   7 YFHFPFCAIICPYCGFYVTIGKRKDIALLTEALIREVEiLKDYYSLDPKTVYIGGGTPS-LAKSEEIKQLLSILRKEN-LQELTIEANPRTITEQK-AA 102
                 566888********988888777777666666667776446667789999********7.4699***********999.34555555554443433.34 PP

     Fer4_14 100 dlk 102
                 ++k
  CCG92095.1 103 EWK 105
                 555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2599.70
//
Query:       CCG92096.1  [L=308]
Description: Predicted glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-27   96.1   0.0    2.8e-27   95.6   0.0    1.2  1  Glycos_transf_2  Glycosyl transferase family 2
    9.8e-24   84.5   0.0    1.6e-23   83.8   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    5.3e-10   39.3   0.0    1.6e-07   31.2   0.0    3.0  1  Glyco_tranf_2_5  Glycosyltransferase like family
      5e-09   36.3   0.0    6.4e-09   36.0   0.0    1.1  1  Glyco_trans_2_3  Glycosyl transferase family group 2
    7.8e-07   28.8   0.0      0.026   14.0   0.0    2.1  2  Glyco_tranf_2_2  Glycosyltransferase like family 2
    6.7e-06   25.7   0.0    1.3e-05   24.8   0.0    1.5  1  Glyco_transf_7C  N-terminal domain of galactosyltransferase
    7.2e-06   25.6   0.0    1.1e-05   25.0   0.0    1.3  1  Glyco_transf_21  Glycosyl transferase family 21
    9.3e-05   22.9   0.0    0.00022   21.7   0.0    1.6  1  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.0   1.3e-30   2.8e-27       1     169 [.      14     177 ..      14     178 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 1.3e-30
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      sv+i+t++ +k ++++le+l  q    ++ei+vvD++StD+t++ile+l+    ++ +i ++ n+G+a+a n+ l++a+g+++lfl+ D++++ 
       CCG92096.1  14 SVIIVTFQSQKVIKNCLEALFCQ-RGVRIEIFVVDNNSTDGTKAILEALS---TKIFFIENPSNEGFAKAANKPLSQAKGRFVLFLNPDVVIKN 103
                      8**********************.*************************7...5**************************************98 PP

                      T.HHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHC CS
  Glycos_transf_2  95 d.wleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrealeel 169
                        +l kl++ +++  + +++g   ++++++ + +  ++  + +  ++     +++gn++   g + ++r+e+l+++
       CCG92096.1 104 PyFLGKLAALFDESKTVGAIGPSLYYPDGKIQSTTSLQ--YPNQKWTLGSIPKYPGNIAALLGACLAIRKEILDQI 177
                      88********************************9998..89*******************************987 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   7.1e-27   1.6e-23       4     216 ..      13     219 ..      10     230 .. 0.85

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 7.1e-27
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDdD 97 
                       +v+++tf+ ++v+ ++le+l  q   r+e++vv+++s+++t + +e+    l++ ++  + n   ++  g++ a n  l+++k+++vl+++ D
       CCG92096.1  13 WSVIIVTFQSQKVIKNCLEALFCQRGVRIEIFVVDNNSTDGTKAILEA----LST-KIFFIEN---PSNEGFAKAANKPLSQAKGRFVLFLNPD 98 
                      58*********************999******************9998....677.7888855...5556677788****************** PP

  Glyco_tranf_2_3  98 tvv.ePdtlkrllqff.ltpkvgavgtpvfllnrstlvsalgalefaerhlrflaarralgvltlnGsgslirrevlkelegldp.lflltdDy 188
                      +v+  P++l +l+++f +++ vga+g p + + + + +s +   ++++  +  +   + +++++l G++++ir e+l++++g+d+  fl ++D 
       CCG92096.1  99 VVIkNPYFLGKLAALFdESKTVGAIG-PSLYYPDGKIQSTTSLQYPNQKWTLGSIPKYPGNIAALLGACLAIRKEILDQIGGFDEdYFLYGEDQ 191
                      ****************8888888886.44455566665544444455555556666677779******************************** PP

  Glyco_tranf_2_3 189 elglrlrragfrtayvpgaavrevfpss 216
                      +++lr+r+ gf  ay p+   ++v + s
       CCG92096.1 192 DICLRIRKLGFSLAYSPQIQAYHVGGHS 219
                      **********************996644 PP

>> Glyco_tranf_2_5  Glycosyltransferase like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   7.3e-11   1.6e-07      29     177 ..      62     204 ..      15     237 .. 0.69

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 7.3e-11
  Glyco_tranf_2_5  29 eveiiairna..ksiaeaynkalsasdakykvYlhqDvliinkdfikdlleiFkkdkkiGmiGvvGakslpesgvwweskkkvgkvietskeea 120
                      +  i+ i+n   +  a+a nk ls+++ +++++l+ Dv+i n+ f+ +l  +F++ k++G iG    +    +g +     ++ ++ ++    +
       CCG92096.1  62 STKIFFIENPsnEGFAKAANKPLSQAKGRFVLFLNPDVVIKNPYFLGKLAALFDESKTVGAIG---PSLYYPDGKIQ----STTSL-QY---PN 144
                      34455555558899***************************************9999998887...44444444332....11222.22...23 PP

  Glyco_tranf_2_5 121 kelraeeeeseyeeVeaidGllmatqydv.....pwredlftgfhfYdvsqslefekagykv 177
                      ++ + ++  + + ++ a+ G  +a+++++      ++ed     +  d + +l+++k g+  
       CCG92096.1 145 QKWTLGSIPKYPGNIAALLGACLAIRKEIldqigGFDED--YFLYGEDQDICLRIRKLGFSL 204
                      333336666777777777777777777777777777777..335666777777777777665 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   2.9e-12   6.4e-09       2     138 ..      92     233 ..      91     287 .. 0.66

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 2.9e-12
  Glyco_trans_2_3   2 illlDaDtvl.ppdclreiaaela.spevaivqgpvlvmnvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevggwdgd 93 
                      +l+l  D v+ +p +l ++aa+++ s  v+++ gp+l+++ +++ ++   l + ++ + +++  +++g+ + + G++ ++r + l+++gg+d d
       CCG92096.1  92 VLFLNPDVVIkNPYFLGKLAALFDeSKTVGAI-GPSLYYPDGKIQST-TSLQYPNQKWTLGSIPKYPGNIAALLGACLAIRKEILDQIGGFDED 183
                      67777788872445555667788844666666.77777655544444.44556455556789999***************************** PP

  Glyco_trans_2_3  94 essvsEDfdmglrlqrkGyrvrfvpeslvkeksplt........lraalrQrk 138
                       +  +ED d++lr++++G+ + + p+ + + ++  +        l   + ++ 
       CCG92096.1 184 YFLYGEDQDICLRIRKLGFSLAYSPQIQAYHVGGHSsenlsyklL---WDRKL 233
                      ************************999555443333345554442...22222 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.3e-05     0.052       2      96 ..      15     103 ..      14     138 .. 0.70
   2 !   14.0   0.0   1.1e-05     0.026     166     214 ..     165     211 ..     152     243 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
  Glyco_tranf_2_2   2 vviplraseerhyieervlqkakyydeeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfis 95 
                      v+i   +s++   i++ +     +    ie+ vvd+ S++ +   ++++  +   +   +++ +  + a+a N+  s+a++ +vlFl+ D  i 
       CCG92096.1  15 VIIVTFQSQKV--IKNCLEALFCQRGVRIEIFVVDNNSTDGTKAILEALSTKIFFI---ENPSN-EGFAKAANKPLSQAKGRFVLFLNPDVVIK 102
                      55544444444..555554444444559*************877777665554444...33333.2567777999*************998876 PP

  Glyco_tranf_2_2  96 s 96 
                       
       CCG92096.1 103 N 103
                      5 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.1e-05
  Glyco_tranf_2_2 166 ssilinrraflevGGyDErfrGhgaEDfdlllRlakaikslekmpvell 214
                        + i+++ + ++GG+DE +     ED d+ lR+ k   sl   ++++ 
       CCG92096.1 165 ACLAIRKEILDQIGGFDEDYFLY-GEDQDICLRIRKLGFSL-AYSPQIQ 211
                      56779**************9555.59*********999999.4555554 PP

>> Glyco_transf_7C  N-terminal domain of galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   5.7e-09   1.3e-05      17      66 ..     160     208 ..     151     244 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 5.7e-09
  Glyco_transf_7C  17 ekyfgGvlalrkedfekiNGfsntfwgWGgEDdelyaRlakkgleierpe 66 
                        + g  la+rke   +i+Gf++ ++ +G ED++++ R++k g+ +   +
       CCG92096.1 160 AALLGACLAIRKEILDQIGGFDEDYFLYG-EDQDICLRIRKLGFSLAYSP 208
                      6788999*********************8.*************9976633 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0     5e-09   1.1e-05      23     156 ..      81     216 ..      63     234 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 5e-09
  Glyco_transf_21  23 lqaleaakydllvisDsdvrvk.pdyLeellaaledpkvglVtslpvgsdakglaaaleaaflntlagvlqa.kl.sglgfavGksmalrreaL 113
                      ++ l++ak ++++++  dv++k p +L +l+a + ++k+    +++++++  ++ ++   ++ n  + + +  k  + +   +G+++a+r+e+L
       CCG92096.1  81 NKPLSQAKGRFVLFLNPDVVIKnPYFLGKLAALFDESKTVGAIGPSLYYPDGKIQSTTSLQYPNQKWTLGSIpKYpGNIAALLGACLAIRKEIL 174
                      577899999*********99972556889999999999999999*********999887666543333333343338999************** PP

  Glyco_transf_21 114 eaiGGfealadeLAeDyalgkllraaGlkvvlspapiaqtsvp 156
                      ++iGGf +      eD  +  ++r+ G++++ sp+  a  +v+
       CCG92096.1 175 DQIGGFDEDYFLYGEDQDICLRIRKLGFSLAYSPQIQA-YHVG 216
                      ********666679********************9644.3333 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0     1e-07   0.00022       5      81 ..      24      98 ..      21     113 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1e-07
  Glyco_tranf_2_4  5 diLpeflahh.lalgfd.rilvydndstDgtrailkel.pevkllhvdksyederrqvellkallaryaeadwvlvvDaD 81
                     ++++++l+++ ++ g++ +i+v+dn+stDgt ail++l  ++ +++++++     ++ ++ k l +  a++++vl++  D
       CCG92096.1 24 KVIKNCLEALfCQRGVRiEIFVVDNNSTDGTKAILEALsTKIFFIENPSNEG---FAKAANKPLSQ--AKGRFVLFLNPD 98
                     5677788765467777658******************945588888888654...44444444443..346666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2149.14
//
Query:       CCG92097.1  [L=248]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   11.7   0.0        1.5    8.5   0.0    2.0  2  GT-D      Glycosyltransferase GT-D fold


Domain annotation for each model (and alignments):
>> GT-D  Glycosyltransferase GT-D fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.015   2.7e+02       2      47 ..      26      78 ..      25     109 .. 0.67
   2 ?    8.5   0.0   8.2e-05       1.5     162     197 ..     176     213 ..     136     217 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.015
        GT-D  2 sRfGdGEleliegk......kikfQ.kydekLakrLkevlkseeenllvclpd 47
                sR+ dGE  +++++      + ++  +++ +++  L++ l+ ++ ++  ++p 
  CCG92097.1 26 SRYNDGEALILSNQkvgckgEWEYNpTKNLSFRADLRKSLQATDPRFFYGVPS 78
                89*****9999988555544445542445566677788887777777777775 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 8.2e-05
        GT-D 162 ilkiekdklvLlalGptatvlaydLake..gyqviDiG 197
                 + + + ++l+L+a Gp +++l + L++   ++  +DiG
  CCG92097.1 176 MATRSDHSLFLIAAGPLGKILIHALWEIspNNTYLDIG 213
                 34447899*****************9752257788888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1666.30
//
Query:       CCG92098.1  [L=219]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        0.2   11.6   0.0       0.33   10.9   0.0    1.3  1  Methyltransf_32  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.8e-05      0.33      33      61 ..      58      87 ..      34      91 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.8e-05
  Methyltransf_32 33 GaGkgYLsfvlal.kekeyklkvvgidake 61
                     G+  gYL++ l++ k+ + k+ ++gid+  
       CCG92098.1 58 GDSDGYLGRFLYSdKSLREKIDITGIDSTP 87
                     7778*********666679********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1556.87
//
Query:       CCG92099.1  [L=146]
Description: SHS2 domain protein implicated in nucleic acid metabolism [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-32  112.7   0.0    1.7e-32  112.5   0.0    1.0  1  Archease  Archease protein family (MTH1598/TM1083)


Domain annotation for each model (and alignments):
>> Archease  Archease protein family (MTH1598/TM1083)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5   0.0   9.5e-37   1.7e-32       1     138 []      13     146 .]      13     146 .] 0.97

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 9.5e-37
                 EEE---SSEEEEEEE-SSSHHHHHHHHHHHHHHHS--TT---S-EEEEEEEESSSHHHHHHHHHHHHHHHHHT--S----EEEE.E-SSSEEEEEEEE- CS
    Archease   1 yeyldhtADviieawGksleeafesaalalfeymtdlskvepkeekeieveaedledlLfdfLdellylfdteyfvfkevkvdeeeeeeeleleaearg 99 
                 +e++ h AD++i+++G+s eea+ ++ lal++++td +kv p+++++i ++ ++ + lL+d+L+ l++ + te+++f+ +    e+e +   l+++a+g
  CCG92099.1  13 WETFSHMADIGIRGFGNSPEEALIAVSLALISVITDPQKVSPTSSVSIICQDDSYDLLLYDWLNCLIFKMATENMLFSAF----EVELHLPFLRGTAWG 107
                 899*****************************************************************************....56667899******* PP

                 ---.-TT--------B--S---EEEEETTEEEEEEEEE- CS
    Archease 100 ekfdkekhevqtevKAvTyhelrieeeddgweayvvvDi 138
                 e++d+ekh+   evK++T++el + ++ ++w a+++vD+
  CCG92099.1 108 ETVDREKHNPAVEVKGATFTELFFGQNGNQWIAQCIVDV 146
                 ********999***************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 1268.28
//
Query:       CCG92100.1  [L=39]
Description: hypothetical protein MFUM_310021 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 316.77
//
Query:       CCG92101.1  [L=83]
Description: hypothetical protein MFUM_310022 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       154  (0.00858944); expected 358.6 (0.02)
Passed bias filter:                      136  (0.00758548); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 623.02
//
Query:       CCG92102.1  [L=59]
Description: hypothetical protein MFUM_310023 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       126  (0.00702772); expected 358.6 (0.02)
Passed bias filter:                      109  (0.00607954); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 435.58
//
Query:       CCG92103.1  [L=476]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-150  500.9   0.0   3.7e-150  500.7   0.0    1.0  1  RtcB      tRNA-splicing ligase RtcB


Domain annotation for each model (and alignments):
>> RtcB  tRNA-splicing ligase RtcB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.7   0.0    2e-154  3.7e-150       1     412 []      45     476 .]      45     476 .] 0.98

  Alignments for each domain:
  == domain 1  score: 500.7 bits;  conditional E-value: 2e-154
                 HHHHHTTSTTB-S-EEEEEEEE--SSS-EEEEEEE-....-EE-HHHC-SST.-EEEEEEEEEEHHHHGGGHHHHHHHHHHHS-------------HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        RtcB   1 qlknvaslpgivkhvaamPDvHlGkgapiGsViatk....gviiPaaVGvDI.CGvrllktnltaeeleeklkelvkelekavpvglgskkkvklskke 94 
                 q+ nvaslpgivk++++mPD+H+G+g+piG+V+a++    gvi++++VG+DI CGvr+l t l+++++e+  ++l++ l+k++p+g+gs++k++l+k+e
  CCG92103.1  45 QASNVASLPGIVKASFVMPDAHWGYGFPIGGVAAFDpdqdGVISAGGVGFDIsCGVRTLLTGLQEKDIEPIKNKLADLLFKEIPAGVGSHGKIHLDKNE 143
                 899************************************************************************************************ PP

                 HHHHHHHTHHHHHHTTSS-GGGGGGBGGGG--TT--GGGS-HHHHHHHGGGTT---STT-EEEEEEEEEES-HHHHHHHT--TTEEEEEEEE--HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        RtcB  95 leevleegakwaveeglgeeedlekieeegalkeadlekvskkakerarkqlGtlGsGNHFiEvqlveeildeeaakalgleegqvvvmlHsGSRglGh 193
                 ++++l  gakwa+e+g+g+eedl++iee g++ +ad+++vs+ aker++k++GtlGsGNH+ Evq+v +i+de++ak l+++eg++vv +H+GSRglGh
  CCG92103.1 144 MDKMLVGGAKWAIEQGYGKEEDLQRIEEGGCMPGADPQAVSNLAKERQAKEMGTLGSGNHYAEVQVVGKIFDEAIAKLLSIHEGDIVVSIHCGSRGLGH 242
                 *************************************************************************************************** PP

                 HHHHHHHHHHHCCHHHCT---SSGGG--EETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T--HHHH--EEEEEEESEEEEEEEE..T.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.. RF
        RtcB 194 qiaedylkiakkalkkkgiklpdrdLaylpagseegqaYlkamqaaanyAkaNRqvitervreilekvlkkekedlelelvvdvaHNiakkEehe.d.. 289
                 qi++dylk +   ++k +i+lp+r+La++p++s+ g++Yl am+a+ n+A aNRq++t+++r++++ ++     ++ + l++dv+HN++k Eeh+ +  
  CCG92103.1 243 QIGTDYLKEMVVCAQKLKIELPERELACAPIQSDLGKRYLGAMRAGINCALANRQILTHLIRKVFSYFFP----NIFMPLLYDVSHNTCKVEEHSiNgg 337
                 ***********89999999**************************************************5....57799****************9457 PP

                 .EEEEEEEES-EE-.............TT--EEEE--STTS-EEEEE--HHHH..SSSEE---S-----------------TTTTTCCCT-EEEE---- CS
                 .xxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        RtcB 290 .ekvlVhRKGAtrA.............kvgqpviipGsmgtkSyivkGkgnae..sfgStsHGAGRlmsRakakkkfkleevkkdleeqgigvearkke 372
                  +k++VhRKGAtrA             ++gqpv+i Gsmgt+Syi++G+ ++e  +f+S+ HGAGR+msR+ka k++k++e+ k+le++gi ++a +++
  CCG92103.1 338 sKKLFVHRKGATRAfgpghheipedlkEAGQPVLIGGSMGTHSYILVGTTQSErlAFSSAVHGAGRAMSRSKALKEWKGKEIIKSLEAKGILIRAVSER 436
                 9*************************************************99999******************************************** PP

                 --------------HHHHHHHHCTS-EEEEEEEEEEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        RtcB 373 gvleEapeaYKdideVveaqaeaglvevvarlkpvlvvkg 412
                 gv+eEap aYKd+++Vvea+++a+l++ +arl p++++kg
  CCG92103.1 437 GVAEEAPLAYKDVSDVVEAAHKAELAKLIARLDPLICIKG 476
                 ***************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3424.17
//
Query:       CCG92104.1  [L=367]
Description: Zn-dependent protease fused to CBS domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-20   71.5   0.1    6.1e-09   36.2   0.0    2.6  2  CBS             CBS domain
    1.5e-14   53.9  13.6    5.1e-09   35.8   3.6    2.8  2  Peptidase_M50   Peptidase family M50
    0.00047   19.8   0.1    0.00047   19.8   0.1    2.3  2  Peptidase_M50B  Peptidase M50B-like


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0     1e-12   6.1e-09       2      53 ..     236     286 ..     235     290 .. 0.91
   2 !   32.8   0.0   1.1e-11   6.8e-08       1      56 [.     297     351 ..     297     352 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1e-12
                 HHHSBSSCEEEETTSBHHHHHHH.HHHHTSSEEEEEETTTBEEEEEEHHHHHH CS
         CBS   2 gdimtrdvvtvppdttleealel.mrekgvsrlPVVdedgklvGivtlrDllr 53 
                 +++m r++++++p++tl++a+e+ +  +  + +PVV e++klvG++ + Dll 
  CCG92104.1 236 SHLMLREFHVLSPTDTLAKAIEItL-ATQQHDFPVV-ENNKLVGMLYRADLLM 286
                 689********************77.66699*****.899***********96 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 1.1e-11
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHT..SSEEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   1 Vgdimtrdvvtvppdttleealelmrekg..vsrlPVVdedgklvGivtlrDllrall 56 
                 V+++mtr++v+v  ++  ee++ ++      +  +PV+ e g+lvG++t++ ++++l+
  CCG92104.1 297 VEEVMTREFVVVESSDKAEEVFSKL--QSipYATIPVT-EKGELVGLLTKENIAEFLM 351
                 89***********************..66579999**9.9***************996 PP

>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   3.6   8.5e-13   5.1e-09       2     108 ..      48     119 ..      47     135 .. 0.91
   2 !   24.1   1.3     3e-09   1.8e-05     189     226 ..     137     174 ..     120     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 8.5e-13
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50   2 filllgilvvvHElGHflvAklcgvkveefsigfGpkllsfkkgeteYaiallpLGGyVkmageepeeelseeeakaflkkspwqrllivlAGpla 97 
                    f l+l++++v+HElGH+ +A+ +++  +                     i+llp+GG+ ++++                 ++p+q+l++++AGp++
     CCG92104.1  48 FTLALFFVIVLHELGHATAARFFKISTKD--------------------ITLLPIGGVARLEKIP---------------EDPIQELIVAIAGPAV 108
                    889************************98....................9************998...............5699************ PP

                    XXXXXXXXXXX CS
                    xxxxxxxxxxx RF
  Peptidase_M50  98 nfilailvfvv 108
                    n+ila++++++
     CCG92104.1 109 NIILALFLYLI 119
                    ********987 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 3e-09
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 189 ssflqllalisvnLgilNLlPipvLDGghllfalleai 226
                     ++l+ +++ +++L+ +NL+P +++DGg++l+ ll   
     CCG92104.1 137 GNILAQFFWTNIILAGFNLIPAFPMDGGRILRGLLGIK 174
                    4899999*************************998743 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   7.9e-08   0.00047      20      87 ..      51     119 ..      23     125 .. 0.85
   2 ?    0.4   1.0     0.069   4.1e+02      79     131 ..     167     214 ..     164     252 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 7.9e-08
  Peptidase_M50B  20 fkllvvffHElGHalaalLtGgrvkgielhsdesGvtvtrg..pgglgqiltllaGYlgpallGlllill 87 
                     +  +v+++HElGHa+aa  +  + k+i+l +  +Gv+  +   +  ++  ++++aG+    +l l+l l+
      CCG92104.1  51 ALFFVIVLHELGHATAARFFKISTKDITLLPI-GGVARLEKipEDPIQELIVAIAGPAVNIILALFLYLI 119
                     45689999*********************995.89****99988999***********999999998765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.069
  Peptidase_M50B  79 llGlllillsasgkarlllvllvllllvllllv..rnlfglvlllllgallllvl 131
                     l Gll+i + + + +r++++++ ++ l++ ++    n+f++++ l++       +
      CCG92104.1 167 LRGLLGIKMDFLHATRIAASVGQTIALAFGFIGlfTNPFLILIALFV-------W 214
                     56777777777777766666555555544333212555555444433.......2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2674.13
//
Query:       CCG92105.1  [L=397]
Description: Acetate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.5e-117  392.6   0.0   1.7e-117  392.4   0.0    1.0  1  Acetate_kinase  Acetokinase family


Domain annotation for each model (and alignments):
>> Acetate_kinase  Acetokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.4   0.0  9.7e-122  1.7e-117       2     390 .]       8     384 ..       7     384 .. 0.94

  Alignments for each domain:
  == domain 1  score: 392.4 bits;  conditional E-value: 9.7e-122
  Acetate_kinase   2 vLviNaGSsSlKfqlleaeakeevllkglveeilleeaellkkl.egekkeaektaiadheealklilntlkeekvikdlkeiaaighRvvhgge 95 
                     +L +N+GS+S+K++++++e +e   l+g +e+i++ ++ +  +  ege   +e ++ +dh+ea++ +++ lk+   +++ +++ a+ghR+vhgg+
      CCG92105.1   8 ILTVNSGSTSIKISIFDSE-TESLVLHGTIERIGITNSLFQFRNrEGEILAEELLQLKDHDEAIAKLFSFLKK---HRLESSLLAVGHRIVHGGQ 98 
                     899***************7.6667777*********9987766404555677889******************...689999************* PP

  Acetate_kinase  96 kftesvlitdevvekikdlielaplhNpanlegieaakkllpevknvavfDtafhqtlpeeaylyalpeelyeehgiRrygfHgtshkyvskraa 190
                      f+e+ l+t e++e++k+li+lap h p+++ +ie+++k +p++kn+  fDtafh+t+p++a+ yalp++l +++gi rygfHg+s +yv ++++
      CCG92105.1  99 LFQEPRLVTSEMLENLKELIPLAPDHLPSQILAIESFRKHIPQTKNICCFDTAFHKTIPHYARHYALPKSL-RNMGIVRYGFHGLSCEYVMEELQ 192
                     ***********************************************************************.55******************998 PP

  Acetate_kinase 191 kilgkpledlnlivcHlGnGaSvaavknGksvdtsmgltpLeGlvmgtRsGdidpailvylaeteglsadeventlnkksGllglsglssDlrev 285
                     +  +k+ +  ++i++HlG+GaS++av nG+s+dt+mg+ pL Gl+mgtR+Gd+dp++++yl +++g  a e++++lnk+sGllglsg s  ++++
      CCG92105.1 193 EK-EKEKAWGKIIIAHLGGGASLTAVYNGQSIDTTMGFSPLSGLIMGTRCGDLDPGAVLYLIKEKGFRATELYELLNKQSGLLGLSGKSPNMKDL 286
                     75.5666679*****************************************************************************99999998 PP

  Acetate_kinase 286 edaaeegdeeaelalkvyvhrlakyigeyaavlegkvDaivFTgGigenaalvrelvlkalevlglevdkeknknrsGedelisteqskvkvivv 380
                     ++    + +ea+ a++++v++ +k +g+++  l +++D +vFTgGigen+a++re+++k+l +  +++d+ kn+    ++e+iste+s  k+ +v
      CCG92105.1 287 LED---STKEAKEAVDTFVYQAKKFLGAFITIL-NGLDILVFTGGIGENSAQIREKICKNLDFWAIQLDPIKNQ---AHNEIISTEKSTAKIRIV 374
                     765...57899**********************.5*************************************96...7888************** PP

  Acetate_kinase 381 ptnEelaiaq 390
                     +tnEel+ia+
      CCG92105.1 375 KTNEELIIAR 384
                     ********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 2436.50
//
Query:       CCG92106.1  [L=441]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:00.58
# Mc/sec: 2291.12
//
Query:       CCG92107.1  [L=409]
Description: putative cysteine desulfurase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-139  465.5   0.0   1.3e-139  465.3   0.0    1.0  1  Aminotran_5      Aminotransferase class-V
     0.0012   17.9   0.0     0.0018   17.4   0.0    1.2  1  SelA             L-seryl-tRNA selenium transferase
  ------ inclusion threshold ------
      0.027   13.7   0.0      0.039   13.2   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
      0.046   13.0   0.0      0.065   12.5   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
       0.16   10.5   0.0        0.3    9.6   0.0    1.3  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  465.3   0.0  3.7e-143  1.3e-139       1     371 []      24     394 ..      24     394 .. 0.98

  Alignments for each domain:
  == domain 1  score: 465.3 bits;  conditional E-value: 3.7e-143
                  EEEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSH CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaeh 98 
                  iy+d+aAt+qkp +V++al++++ + nanvhr++h+l+++at+ +e+ r+++a++ina+s++ei+ft+Gtte+inlva sl+  +k+gd i++te+eh
   CCG92107.1  24 IYFDNAATSQKPLCVIEALSNFFLSTNANVHRGLHELSSRATELLEASRATIARFINARSQDEIVFTRGTTESINLVAASLGSLFKAGDGILLTEMEH 121
                  8********************************************************************************988************** PP

                  GGGTHHHHHHHHHHTEEEEEEEBE.TTSCBEGGGHHH.H--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESE CS
  Aminotran_5  99 hanlvpwqelakrtgakvkvipld.eegeldldelek.llnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDf 194
                  h+nl+pwq+lak+ g+++ ++p+d +eg+l +  le+ l+++++ + ++thvsn++G+i+pve+++++a+k g+++lvDaaq++gh+p+dv+k+g+Df
   CCG92107.1 122 HSNLIPWQQLAKKNGLRLFFLPIDgREGNLLWTSLEEfLIKNRIVIFSFTHVSNTLGVINPVESLCAIARKLGVITLVDAAQSAGHRPLDVQKIGCDF 219
                  ***********************945799999999772568********************************************************* PP

                  EEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC CS
  Aminotran_5 195 lafsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlk 292
                  lafsghK++gPtGiGvly+rkellek++p+++gg+mv + ++ e+ ++e+p+kfeaGT ++a++i l++a++yl +igle+i+ h+++ a+y++++++
   CCG92107.1 220 LAFSGHKMCGPTGIGVLYGRKELLEKMPPFQYGGNMVLDTDFFESRWKEPPHKFEAGTLPIAEAICLKTAIDYLCQIGLEKIALHDEQIASYAYNQIS 317
                  ************************************************************************************************** PP

                  TSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTTHHHHHHTT.S-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 293 slpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhcaqplmkrlalegtvRaSlyiynteeevdrl 371
                  slp +  +gp  +++ra+iv+f++kg+h++d+ t++d++g+a+r+Ghhc +pl++ l++++++RaS+y+ynt+ evdr+
   CCG92107.1 318 SLPCIIPLGP--TKKRAGIVTFAVKGLHPHDFITYCDRYGVALRGGHHCNKPLLSKLGINSAIRASFYFYNTKSEVDRF 394
                  *****99997..79***************************************************************97 PP

>> SelA  L-seryl-tRNA selenium transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     5e-07    0.0018     199     234 ..     212     247 ..     181     258 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5e-07
                 HHHTT-SEEEEETTSTT-SSS-EEEEE-HHHHHHHH CS
        SelA 199 alaeGvdlvsfsGDkllGgpqaGiivGkkelieklk 234
                 + + G+d ++fsG k+ G    G++ G+kel+ek+ 
  CCG92107.1 212 VQKIGCDFLAFSGHKMCGPTGIGVLYGRKELLEKMP 247
                 5567*****************************995 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.039      67     278 ..     107     324 ..      56     336 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
                      H--TTEEEEEETT...-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHH CS
  Beta_elim_lyase  67 llqrgeevivtep...ahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaia 157
                      l + g+++++te    ++ + + + a +      + +++++e G++   +le+ + +     ++i + s t   nt  G    ++ ++ + aia
       CCG92107.1 107 LFKAGDGILLTEMehhSNLIPWQQLAKKNGLRLFFLPIDGRE-GNLLWTSLEEFLIK-----NRIVIFSFTHVSNT-LGV---INPVESLCAIA 190
                      555666666655544466666665555555555567777777.99999999997766.....23444444444443.244...45566678999 PP

                      HHCT-EEEEEETTHHHHHHHHTS-CHHHH.TTSSEEEEESSSTT--SS-.EEEEE-HH...................HHHHHHHH..HHHHT-- CS
  Beta_elim_lyase 158 kkygiplhlDgARfanaakslgeivkemf.syvDsvtmslkKdllanvG.gvlafrddel...............edylaerveq..rkylggg 232
                      +k g+  ++D+A       s g+ + ++   ++D + +s+ K  + + G gvl +r++ l                d+ ++r++   +k  +g 
       CCG92107.1 191 RKLGVITLVDAAQ------SAGHRPLDVQkIGCDFLAFSGHKM-CGPTGiGVLYGRKELLekmppfqyggnmvldTDFFESRWKEppHKFEAGT 277
                      9***999999874......4455555555136**********7.6789*9********88***************9*******99889999999 PP

                      -SSTHHHHH..HHHHHHHHSSTTHH.HHHHHHHHHHHHHHHCT--EE CS
  Beta_elim_lyase 233 lrqagvlaaleagiraleeglasle.rdhktaeqlaeklelvrlaip 278
                      l  a+ ++ + a  + +++gl++++ +d + a+  +++++ ++++ip
       CCG92107.1 278 LPIAEAICLKTAIDYLCQIGLEKIAlHDEQIASYAYNQISSLPCIIP 324
                      99998888878888999999777653888899999999999998887 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.8e-05     0.065      78     152 ..     130     208 ..      74     227 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.8e-05
                      HHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTE....EEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-E CS
  DegT_DnrJ_EryC1  78 navlelgakpvfvDvdpdtynidpaaieaaitert....kaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGat 152
                      + + ++g++  f+ +d    n+   ++e+ + +++    +   + +++G ++ +++l aia+k g++ + DaA++ G +
       CCG92107.1 130 QLAKKNGLRLFFLPIDGREGNLLWTSLEEFLIKNRivifSFTHVSNTLGVINPVESLCAIARKLGVITLVDAAQSAGHR 208
                      567788999999999999999999999998888883333333456789***************************9976 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   8.4e-05       0.3      81     195 ..     101     223 ..      73     232 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 8.4e-05
                      HHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST..TSHHHHHHHCCT....TEEEEE.EESS-TTTT----HHHHHHHHHHTT CS
  Cys_Met_Meta_PP  81 aaailallkaGdeivvsddlYggtqrllkkvlkklgievkfvdt..sdleelekaike....ntklvy.lEtptnpllkvvDiekiaklakkag 167
                      aa++ +l+kaGd i++++  + +     ++++kk g++  f      + + l + ++e    n  +++ +  ++n l  +  +e+++++a+k g
       CCG92107.1 101 AASLGSLFKAGDGILLTEMEHHSNLIPWQQLAKKNGLRLFFLPIdgREGNLLWTSLEEflikNRIVIFsFTHVSNTLGVINPVESLCAIARKLG 194
                      45688999***********999999999******999998865522444444444433333244455515668888888899************ PP

                      -EEEEEGTTTHTTTS-GG...GGT-SEEEEE CS
  Cys_Met_Meta_PP 168 vlvvvDntfaspllqrpl...klgaDivvhS 195
                      v+++vD++ +++   rpl   k g+D    S
       CCG92107.1 195 VITLVDAAQSAGH--RPLdvqKIGCDFLAFS 223
                      *******999884..4441114566666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2714.98
//
Query:       CCG92108.1  [L=140]
Description: NifU-like protein involved in Fe-S cluster formation [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-23   83.3   0.0    1.8e-23   83.0   0.0    1.0  1  NifU_N         NifU-like N terminal domain
  ------ inclusion threshold ------
      0.029   14.3   0.0      0.037   14.0   0.0    1.2  1  HEPN_AbiA_CTD  HEPN like, Abia C-terminal domain
      0.086   13.1   0.3       0.15   12.3   0.3    1.4  1  TSCPD          TSCPD domain


Domain annotation for each model (and alignments):
>> NifU_N  NifU-like N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   3.1e-27   1.8e-23       2     128 ..       7     127 ..       6     128 .. 0.92

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 3.1e-27
                 SCHHHHHHHHSSSSBSS-TTSSS--EEEEEEETTTTEEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHCCCCHHHHHHHHTCS CS
      NifU_N   2 ysdkvldhyknPrnvGvleeedakvgvgevgapacGDavrLqikvdeetdriedakFktfGCgsaiAssslltelvkgktleealkitnkeiaeelggl 100
                 y++  ldh + Prn G+ e +      +e  +p cGD+++L i +++++++ie ++F + GC+++iAs+sl+te+v+ k++ee+  i+n+  +  l+  
  CCG92108.1   7 YQEILLDHSRYPRNFGKPEGQYL---EAEGTNPSCGDTIQLFISINDSNQIIERVQFLGRGCAISIASASLMTEIVQSKKVEEVIGIKNT-LQLFLT-- 99 
                 99999************999995...99********************************************************887775.344454.. PP

                 CSSSCHCSCHHHHHHHHHHHHHHHHCTH CS
      NifU_N 101 pkeklhcsvlaedalkaavkkYkakkke 128
                  ke ++ svl+e    ++v++++a+ k+
  CCG92108.1 100 SKETVDDSVLGELSCLKGVRHFPARVKC 127
                 79***********************987 PP

>> HEPN_AbiA_CTD  HEPN like, Abia C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.2e-06     0.037      70     118 ..      41      89 ..      10     103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.2e-06
  HEPN_AbiA_CTD  70 lkkfykeiddseeiiekahklrnanPlshssselldkentskelkesik 118
                     ++++  i+ds++iie+ + l     +s +s+ l+ +   sk++ e i 
     CCG92108.1  41 TIQLFISINDSNQIIERVQFLGRGCAISIASASLMTEIVQSKKVEEVIG 89 
                    5778899***********************************9999885 PP

>> TSCPD  TSCPD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   2.5e-05      0.15       6      49 ..      37      88 ..      33      95 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.5e-05
       TSCPD  6 vCsreieievd.dk...liknvkfvg.GCngnlkg...iskLvegmkveevi 49
                 C+ +i++ ++ ++   +i++v+f g GC+  + +   ++++v+ +kveevi
  CCG92108.1 37 SCGDTIQLFISiNDsnqIIERVQFLGrGCAISIASaslMTEIVQSKKVEEVI 88
                68877765444322245*******988**75554412267888999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1000.41
//
Query:       CCG92109.1  [L=133]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 965.40
//
Query:       CCG92110.1  [L=137]
Description: hypothetical protein MFUM_310031 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1064.19
//
Query:       CCG92111.1  [L=1055]
Description: Transcription-repair coupling factor mfd (Superfamily II helicase) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-22   79.6   0.0      6e-22   78.2   0.0    1.8  1  CarD_CdnL_TRCF   CarD-like/TRCF domain
    1.4e-21   76.9   2.6    4.5e-19   68.8   0.3    3.1  3  Helicase_C       Helicase conserved C-terminal domain
    2.3e-19   69.6   0.1    1.1e-18   67.3   0.1    2.2  2  TRCF             TRCF domain
    1.7e-17   63.7   0.2    7.1e-17   61.7   0.0    2.0  2  DEAD             DEAD/DEAH box helicase
    1.9e-15   56.8   0.0    7.1e-15   55.0   0.0    2.0  1  UvrB_inter       UvrB interaction domain
    9.6e-07   29.0   0.0    3.5e-06   27.1   0.0    2.0  3  ResIII           Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.11   12.4   0.1       0.38   10.7   0.0    1.9  2  Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
       0.12   12.4   0.0       0.47   10.5   0.0    2.1  2  UB2H             Bifunctional transglycosylase second domain
       0.14   12.3   0.2        9.2    6.4   0.1    2.5  2  RC-P840_PscD     Photosystem P840 reaction centre protein Psc


Domain annotation for each model (and alignments):
>> CarD_CdnL_TRCF  CarD-like/TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0     3e-25     6e-22       2      95 ..     406     497 ..     405     498 .. 0.95

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 3e-25
  CarD_CdnL_TRCF   2 kvGDyVvhedhGiGriegiekrevegaekeylvleyadkkgdklyvPvdqldlirkyiske..epkldklggkrwektkekakkgvkeeaaelvk 94 
                     k GDyVvh +hGi+r++gi+++  +g+++e++ le+ +  ++kl+vP+dq+ li++yi+    +pkld+lgg+rw ++k   +k+v + a++++k
      CCG92111.1 406 KDGDYVVHLQHGICRFRGIKSM--DGTNSEMIELEFDQ--KAKLFVPIDQAYLISRYIGGTkkQPKLDSLGGTRWLRAKIATEKAVSDLAERMLK 496
                     67*****************766..9*************..79****************988999****************************998 PP

  CarD_CdnL_TRCF  95 l 95 
                     +
      CCG92111.1 497 I 497
                     5 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.2   2.4e+03      11      43 ..     312     344 ..     303     352 .. 0.64
   2 !    6.5   0.0    0.0053        11       8      73 ..     567     636 ..     560     648 .. 0.85
   3 !   68.8   0.3   2.3e-22   4.5e-19      11     110 ..     730     832 ..     720     833 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.2
                 HHTTTTSEEEEEESSHH...HHHHHHHHHHHTTSTE CS
  Helicase_C  11 kleeeggkilifvntid...rlekvklllekkgikv 43 
                 +  e++ +i+ifvn+     rl   k +l+++gi +
  CCG92111.1 312 QWIEKKWEIVIFVNNEGeesRL---KEILSNQGIGI 344
                 455888899*****99854455...44445665544 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0053
                 HHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C   8 ellkleeeggkilifvntidrlek.vklllekk...gikvavlhgelpqnereeileqfnkgesdvLiat 73 
                 +++k    g+++ + ++t+  +++ ++ l e++    i++a l   ++++e +eil+  ++g++dv+i t
  CCG92111.1 567 AIFKAVMGGKQAALLAPTTVLAKQhFQTLSERFadyPIQTALLCRLIKNSEEKEILAGLKNGSIDVVIGT 636
                 4557777889999999999977767788888888778*******************************99 PP

  == domain 3  score: 68.8 bits;  conditional E-value: 2.3e-22
                 HHTTTTSEEEEEESSHHHHHH.HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.SSHHHHHHHH CS
  Helicase_C  11 kleeeggkilifvntidrlek.vklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.rnvtsyiqri 104
                  + ++gg+++   n+i+++ek ++ ++  +   ++k+a+ hg+++++e ee++e+f +g++dvL+at+++e+G+dip++n++i+  ++ ++++++ q +
  CCG92111.1 730 RELNRGGQVYFLHNRIRTIEKvASRIK--SllpSVKIAIGHGRMKKSELEEVMESFVNGQIDVLLATSIIENGLDIPNANTIIIDRADlFGLADLYQLR 826
                 44589**************98844442..23469******************************************************999******** PP

                 TTSSST CS
  Helicase_C 105 GRtgRa 110
                 GR+gR 
  CCG92111.1 827 GRVGRS 832
                 *****7 PP

>> TRCF  TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.6   9.1e+03      40      58 ..     594     612 ..     590     614 .. 0.84
   2 !   67.3   0.1   5.8e-22   1.1e-18       5      83 ..     942    1020 ..     939    1029 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.6
        TRCF  40 eLiDrFGklpeevenLlev 58 
                  L +rF ++p ++  L ++
  CCG92111.1 594 TLSERFADYPIQTALLCRL 612
                 6999******999988876 PP

  == domain 2  score: 67.3 bits;  conditional E-value: 5.8e-22
        TRCF    5 alipeeYipdeserlelYkriasieteeeldeleeeLiDrFGklpeevenLlevarlkllakklgiekikekkkkleit 83  
                  a+ip +Y++  +erl+ Y+++a++ +  el+e+++  +DrFG  pe+venL+ +++++l+ ++ gie+i+ +++kl++ 
  CCG92111.1  942 AFIPFTYMERREERLQAYRQLAEALSIGELEEIKKGWKDRFGAWPEPVENLFSITEIRLIGAAKGIERIESDQDKLKLM 1020
                  89************************************************************************99875 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   3.6e-20   7.1e-17       3     170 ..     530     685 ..     528     690 .. 0.82
   2 ?   -1.5   0.0       0.9   1.8e+03      64     132 ..     752     816 ..     724     823 .. 0.58

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 3.6e-20
                 HHHHHHHHHH......TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTT.T.STSEEE.EEETTSSHHHHHH CS
                 xxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxx.xxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplil......gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkk.y.idlrvl.liiggvaardqls 92 
                  Q +ai+++       +  d l+++++G GKT++++ +++++v       g++a +++Pt+ La+q++++l++++  y i+  +l  +i+++++++ l+
  CCG92111.1 530 DQLKAIEETKrdmeskRPMDRLICGDVGFGKTEVAIRAIFKAV-----MGGKQAALLAPTTVLAKQHFQTLSERFAdYpIQTALLcRLIKNSEEKEILA 623
                 6777777777444322226889******************999.....5799*******************99888335664444367999999***** PP

                 HHHTT.CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  93 kldng.vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                  l+ng +d+v+gt+  l   +      ++++ ++V+DE +r+    ++++++  ++ +            v+ lSAT+ 
  CCG92111.1 624 GLKNGsIDVVIGTHRLLSADVA-----FKDLGLIVIDEEQRFGVL-QKEKWKDTFRLI-------D----VLSLSATPI 685
                 **9999********77777554.....*****************9.899999989999.......2....999999986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.9
                 HHHHHHHTTTSTSEEEEEET.TSSHHHHHHHH....HTT.CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHH CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx....xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  64 lnnlkkfkkyidlrvlliig.gvaardqlskl....dng.vdivvgtpgrlddllstgklnlsqvrflVlDEadr 132
                 ++++k+++     +v+  ig g  ++++l+++     ng +d++++t      +  ++ l++ + +++++D ad 
  CCG92111.1 752 ASRIKSLLP----SVKIAIGhGRMKKSELEEVmesfVNGqIDVLLATS-----I-IENGLDIPNANTIIIDRADL 816
                 333333333....34433443555566666662111122344444443.....2.34566888888888888886 PP

>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   3.6e-18   7.1e-15       3      84 ..     160     240 ..     158     242 .. 0.95

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 3.6e-18
  UvrB_inter   3 lkvgqkidreellrkLvelqYerndvelkrGtFrvrGdtveifpasaeevairieffgdeiesireidpltgkslekleeit 84 
                 +  g++ dr  l+++L+e++Yer d++ +rG+ +vrG++v+ f  + +  ++r e++g++i s+r+++p+t++s++ lee+ 
  CCG92111.1 160 IVPGKTTDRFALIERLIEAGYERVDTVDNRGQLAVRGSIVDFFSWD-GVFPLRTEWEGNQIISLRQFHPITQRSFKPLEEAF 240
                 67899*****************************************.799*************************9998875 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         6   1.2e+04      36      54 ..     163     181 ..     163     183 .. 0.88
   2 !   27.1   0.0   1.8e-09   3.5e-06       5     169 ..     528     684 ..     524     686 .. 0.82
   3 ?   -2.9   0.0         3   5.9e+03      46      82 ..     729     763 ..     722     791 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 6
                 THHHHHHHHHHHH-S.... CS
      ResIII  36 GKTlvaaklierllkkgke 54 
                 GKT   ++lierl ++g+e
  CCG92111.1 163 GKTTDRFALIERLIEAGYE 181
                 999999*******999875 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.8e-09
                 -HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B--.... CS
      ResIII   5 reyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke...igkkvsgdkkka..ke 98 
                    Q +aie+++  ++skr    li    G GKT va+++i +    gk  ++ +l+p++ l +q  +++++ + ++  +    +  +++ ++k+    
  CCG92111.1 528 TADQLKAIEETKRDMESKRPMDRLICGDVGFGKTEVAIRAIFKAVMGGK--QAALLAPTTVLAKQHFQTLSERFADYPIQtalLCRLIKNSEEKEilAG 624
                 5679************************************999999766..9***************88888888776556776666666666555678 PP

                 .....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...TTTHHHHHT---SEEEEEESS- CS
      ResIII  99 kdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..kswreilekfkeavllglTATp 169
                  ++ ++++++ t   l+ad             +   +i+iDE  r+g    ++w+   + ++   +l l+ATp
  CCG92111.1 625 LKNGSIDVVIGTHRLLSADV----------AFKDLGLIVIDEEQRFGVLqkEKWKDTFRLID---VLSLSATP 684
                 88889999999999999999..........455556**********9953346666555555...9******9 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3
                 HHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.. CS
      ResIII  46 erllkkgkeekflflvprkslleqtleefkkflseay 82 
                 er l+ g+  ++ fl +r+  +e+  +++k++l++ +
  CCG92111.1 729 ERELNRGG--QVYFLHNRIRTIEKVASRIKSLLPSVK 763
                 44444444..899999999999999999999888764 PP

>> Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.3   6.5e+03      45     100 ..     576     633 ..     565     634 .. 0.53
   2 ?   10.7   0.0   0.00019      0.38      33     101 ..     724     792 ..     708     795 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.3
  Glyco_tran_WecB  45 lrvfllGgkpevlekaaerlrekypglriagthdgy..keeeeeaiieainaskpdll 100
                      ++ +ll  +   +++  ++l+e++ +  i ++      k++ee++i++ +++ + d++
       CCG92111.1 576 KQAALLAPTTVLAKQHFQTLSERFADYPIQTALLCRliKNSEEKEILAGLKNGSIDVV 633
                      4444444555556666666666665433333222222246777777777777777666 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00019
  Glyco_tran_WecB  33 ieelleraeeeglrvfllGgkpevlekaaerlrekypglriagthdgykeeeeeaiieainaskpdlll 101
                      i++ +er  ++g +v++l  +  ++ek+a+r+++ +p ++ia  h   k++e e+++e   + + d+ll
       CCG92111.1 724 IRQAIERELNRGGQVYFLHNRIRTIEKVASRIKSLLPSVKIAIGHGRMKKSELEEVMESFVNGQIDVLL 792
                      4455555555599****************************9755554789999999999988888887 PP

>> UB2H  Bifunctional transglycosylase second domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00024      0.47       3      44 ..     162     203 ..     160     224 .. 0.86
   2 ?   -3.8   0.1       7.1   1.4e+04      46      68 ..     506     532 ..     505     542 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00024
        UB2H   3 pGaalsaaqleqeLellgYrkvsnvtrpGeyavsgnriellr 44 
                 pG+  ++ +l++ L ++gY +v++v++ G+ av+g+ +++++
  CCG92111.1 162 PGKTTDRFALIERLIEAGYERVDTVDNRGQLAVRGSIVDFFS 203
                 8999999****************************9998876 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 7.1
        UB2H  46 gFdfpdgaeparrvrlrf....agnrv 68 
                 gF fp  ++ +r+++ +f      +++
  CCG92111.1 506 GFSFPKDDHWQREFEESFiyeeTADQL 532
                 699999999999888777443334444 PP

>> RC-P840_PscD  Photosystem P840 reaction centre protein PscD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.044        87      59     119 ..     614     677 ..     588     683 .. 0.78
   2 ?    6.4   0.1    0.0046       9.2      48      92 ..     761     805 ..     740     819 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.044
  RC-P840_PscD  59 klsptkeliekliegeielfvlttq...pdiai.dlkkkvldnenryvidfdkrgvkwtmrdipv 119
                   k s  ke++  l++g i++++ t +    d+a  dl   v+d+e+r+ + ++k   k t+r i v
    CCG92111.1 614 KNSEEKEILAGLKNGSIDVVIGTHRllsADVAFkDLGLIVIDEEQRFGV-LQKEKWKDTFRLIDV 677
                   667889*************99886433378886579999*******976.445555666666655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0046
  RC-P840_PscD  48 qleispasgrrklsptkeliekliegeielfvlttqpdiaidlkk 92 
                    ++i+   gr k s  +e++e  ++g+i++++ t+  + ++d+++
    CCG92111.1 761 SVKIAIGHGRMKKSELEEVMESFVNGQIDVLLATSIIENGLDIPN 805
                   57899999***********************99999888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1055 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.43
# Mc/sec: 7348.93
//
Query:       CCG92112.1  [L=329]
Description: Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-19   69.0   0.0    1.7e-18   67.4   0.0    1.9  2  Rotamase    PPIC-type PPIASE domain
    5.7e-19   68.8   0.0    1.3e-18   67.6   0.0    1.7  1  Rotamase_3  PPIC-type PPIASE domain
    3.2e-16   60.2   3.2    4.2e-16   59.9   0.1    2.7  3  Rotamase_2  PPIC-type PPIASE domain
      6e-15   55.4   1.9      6e-15   55.4   1.9    2.1  2  SurA_N_3    SurA N-terminal domain
    4.9e-07   29.7   0.4    4.9e-07   29.7   0.4    2.7  3  SurA_N_2    SurA N-terminal domain
     0.0006   19.9   3.2     0.0006   19.9   3.2    1.7  2  SurA_N      SurA N-terminal domain
      0.005   16.9   0.3      0.013   15.5   0.0    1.9  2  DUF5415     Family of unknown function (DUF5415)
  ------ inclusion threshold ------
      0.036   14.3   0.2         13    6.1   0.0    2.5  2  DUF2280     Uncharacterized conserved protein (DUF2280)


Domain annotation for each model (and alignments):
>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.9   8.8e+03      64      84 ..     132     154 ..     124     166 .. 0.56
   2 !   67.4   0.0   7.5e-22   1.7e-18      13      97 .]     202     284 ..     188     284 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.9
                 S-CC.CHHHHCCS-C.T-B-S-E CS
    Rotamase  64 lppe.fekaafslkk.Geisepv 84 
                 ++++ +e+++ ++ +  ++sepv
  CCG92112.1 132 YKQQiLEQIIVQAMRmKNVSEPV 154
                 44443444433333336777776 PP

  == domain 2  score: 67.4 bits;  conditional E-value: 7.5e-22
                 --HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEEEEEEEE- CS
    Rotamase  13 keraeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGfhiikled 97 
                 +e + ak+ a+e+l++l+ g+d F+elAr yS +++++ +gGdlgwv+k+ l+pe+++aafs+ +G+ s+++et  G+ ii+led
  CCG92112.1 202 EEYDPAKETATELLSKLQLGAD-FAELARTYS-EGPKRMDGGDLGWVTKDSLRPEIAEAAFSMYPGQTSGVIETVDGYYIIRLED 284
                 456779****************.*********.*************************************************985 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   5.9e-22   1.3e-18       3     116 .]     161     286 ..     159     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 5.9e-22
  Rotamase_3   3 lsklvdkks....akdsvkvshIlistkg.........kesrseeeakakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFeda 88 
                 + k+++       ++ +vk+++I ++ +           + ++ + ak+ a +ll++l+ gadFa+lA++yS+ p  +  GG+lgw+tk+ + +e  +a
  CCG92112.1 161 IEKYYHDHIsqffDPPQVKLRIIFLQKTSfkekratvdGQIEEYDPAKETATELLSKLQLGADFAELARTYSEGPK-RMDGGDLGWVTKDSLRPEIAEA 258
                 55555543344434559999999999888988888874334444557****************************9.********************** PP

  Rotamase_3  89 vfslkkgeiskvvktdfGyHiikvtdkk 116
                 +fs   g++s+v++t  Gy+ii+  dk+
  CCG92112.1 259 AFSMYPGQTSGVIETVDGYYIIRLEDKR 286
                 ***********************99985 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         3   6.7e+03      23      46 ..      35      59 ..      25      82 .. 0.70
   2 !   59.9   0.1   1.9e-19   4.2e-16       3     120 ..     158     297 ..     156     298 .. 0.75
   3 ?   -3.6   0.2         8   1.8e+04      41      58 ..     307     324 ..     303     327 .. 0.50

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3
  Rotamase_2 23 ktlelavvkdqva.aeaalalakag 46
                k+  +++v+ qv+ +ea+l++  +g
  CCG92112.1 35 KVITFSQVRKQVEpNEAVLRETYQG 59
                4556777777766567666665554 PP

  == domain 2  score: 59.9 bits;  conditional E-value: 1.9e-19
  Rotamase_2   3 eaevkayYeankdefskpegktlelavvkdqvaaeaalalakag..................aekdfaalakgnskkaadlg.....ifesasnlpeel 78 
                 + ++++yY +++++f +p ++ l +++ +    +e++     +                    ++dfa+la+ +s+ ++ ++     +++++s l +e+
  CCG92112.1 158 PYQIEKYYHDHISQFFDPPQVKLRIIFLQKTSFKEKRATVDGQIeeydpaketatellsklqLGADFAELARTYSEGPKRMDggdlgWVTKDS-LRPEI 255
                 5689****************8888777765555555533322223333333334444555555578888888888885555556666999999.999** PP

  Rotamase_2  79 akaafalkpgevsgpvetdngyyivkvtevkpakvppfeevk 120
                 a+aaf++ pg++sg++et +gyyi+++++++++k +p+ e +
  CCG92112.1 256 AEAAFSMYPGQTSGVIETVDGYYIIRLEDKRKGKLKPLSELR 297
                 **************************************9976 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 8
  Rotamase_2  41 alakagaekdfaalakgn 58 
                 ++ ++ +++++++l+ ++
  CCG92112.1 307 EQRQKLQQQWLNNLKAKA 324
                 444444444555555554 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   1.9   2.7e-18     6e-15      20     161 ..       7     145 ..       1     146 [. 0.84
   2 ?    0.8   0.1      0.17   3.8e+02      63      95 ..     294     324 ..     258     328 .. 0.60

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 2.7e-18
    SurA_N_3  20 liilaFvlwGvgsylsgsgns..vakVngekIsraefqqayrrqleqlrqqlggnldaellde.lglrqqvldqlidealllqeakklglsvsdeevak 115
                 +++l F    ++s++s+++n+  +a Vn++ I++++++++++     lr+ ++g   +el+d+ ++ r  +l+ lid++l+ q  k ++ +++d+ +++
  CCG92112.1   7 IVFLCFF-CFLQSLFSQTANDgiAAIVNDKVITFSQVRKQVEPNEAVLRETYQG---PELVDRiKEARLSALRALIDRELIIQDFKSKKYAIPDSFIES 101
                 2222222.566899999996668***************************9943...5566666889******************************** PP

    SurA_N_3 116 eiasipaFqedGkFdkerYkqlLaangltpeefeaslredlllqkl 161
                  i++i   q dG  d+ ++ ++L+ang+++e++++++ e++++q +
  CCG92112.1 102 RIRDIIRTQFDG--DRIAFIRTLQANGVSEEQYKQQILEQIIVQAM 145
                 *****8555444..5666*************************987 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.17
    SurA_N_3  63 eqlrqqlggnldaelldelglrqqvldqlidea 95 
                 ++lr+q++g l +e  ++++l+qq l++l ++a
  CCG92112.1 294 SELRSQIEGLLIQE--QRQKLQQQWLNNLKAKA 324
                 55555553333322..34678888888876665 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.4   2.2e-10   4.9e-07      15     121 ..       7     105 ..       1     135 [. 0.76
   2 ?    1.5   0.6      0.11   2.5e+02      78      98 ..     125     145 ..     115     153 .. 0.77
   3 ?   -1.9   0.2       1.2   2.8e+03      61      73 ..     306     318 ..     294     325 .. 0.64

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.2e-10
    SurA_N_2  15 iiglallaFilgdlfgvgsylfssssnevaeVnGekIslqefqqaveearqqlqqqlgenfdeseedeaqlreqvldqlvseklleqeaeklGltvsde 113
                 i++l ++ F+     + + +++ +++  +a Vn++ I++++ +++ve  ++ l+++++    e  ++ +++r ++l +l++++l+ q +++ +  + d+
  CCG92112.1   7 IVFLCFFCFL-----Q-SLFSQTANDGIAAIVNDKVITFSQVRKQVEPNEAVLRETYQGP--ELVDRIKEARLSALRALIDRELIIQDFKSKKYAIPDS 97 
                 2333333333.....3.32334459******************************96665..3344459*****************************9 PP

    SurA_N_2 114 elqdaiqg 121
                  + + i+ 
  CCG92112.1  98 FIESRIRD 105
                 99998887 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
    SurA_N_2  78 seedeaqlreqvldqlvsekl 98 
                 +  +e+q ++q+l+q++ +++
  CCG92112.1 125 NGVSEEQYKQQILEQIIVQAM 145
                 445679999999999999876 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.2
    SurA_N_2  61 eearqqlqqqlge 73 
                 +e+rq+lqqq  +
  CCG92112.1 306 QEQRQKLQQQWLN 318
                 5555656555433 PP

>> SurA_N  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   3.2   2.7e-07    0.0006       2     118 .]      26     146 ..      25     146 .. 0.81
   2 ?   -3.2   0.1       3.8   8.6e+03      41      55 ..     295     309 ..     284     319 .. 0.52

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.7e-07
      SurA_N   2 drivavvnddvvlqseldervkevkkqlakqgkqlPpeavLer...qvlerlilekiqlqeaektgirvddeelnqaiaeiAke.Nkltldqlraalae 96 
                 d i+a+vnd+v++ s+++++v+  ++ l++  +     + +++     l  li  ++ +q  +     + d+ ++  i++i +   + +   + ++l++
  CCG92112.1  26 DGIAAIVNDKVITFSQVRKQVEPNEAVLRETYQGPELVDRIKEarlSALRALIDRELIIQDFKSKKYAIPDSFIESRIRDIIRTqFDGDRIAFIRTLQA 124
                 779******************988777776544333333343311157889999**************************986514556667899**** PP

      SurA_N  97 dGlsydefreqiRkEiiisrlr 118
                 +G+s +++++qi + ii++ +r
  CCG92112.1 125 NGVSEEQYKQQILEQIIVQAMR 146
                 *****************99876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.8
      SurA_N  41 vLerqvlerlileki 55 
                 +L++q+   li e+ 
  CCG92112.1 295 ELRSQIEGLLIQEQR 309
                 444444444443332 PP

>> DUF5415  Family of unknown function (DUF5415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.8e-06     0.013      14      64 ..     120     170 ..     108     172 .. 0.80
   2 ?   -3.0   0.1       3.6     8e+03      46      58 ..     300     312 ..     297     319 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.8e-06
     DUF5415  14 kilerrGvseaqwkkevlekvqfdllrGkdkdleeyiyqrereklvfdeii 64 
                 + l+  Gvse q+k+++le++    +r k+      i   + ek   d i+
  CCG92112.1 120 RTLQANGVSEEQYKQQILEQIIVQAMRMKNVSEPVIISPYQIEKYYHDHIS 170
                 568899******************999998776666666666777777776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.6
     DUF5415  46 leeyiyqrerekl 58 
                 +e+ + q +r+kl
  CCG92112.1 300 IEGLLIQEQRQKL 312
                 6777888888887 PP

>> DUF2280  Uncharacterized conserved protein (DUF2280)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0072        16      60     102 ..     108     150 ..      95     151 .. 0.92
   2 ?    6.1   0.0    0.0059        13      40      59 ..     199     218 ..     171     237 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0072
     DUF2280  60 relFeetRkaFledtaeipianravRLraLerlaekaekkknl 102
                 r+ F   R aF+  +++ ++++  ++ + Le+++ +a ++kn+
  CCG92112.1 108 RTQFDGDRIAFIRTLQANGVSEEQYKQQILEQIIVQAMRMKNV 150
                 6789999**********************************97 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0059
     DUF2280  40 qqvesydPtkaagkdLskkw 59 
                  q+e ydP k+++++L  k+
  CCG92112.1 199 GQIEEYDPAKETATELLSKL 218
                 589********999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1015  (0.0566122); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2408.28
//
Query:       CCG92113.1  [L=294]
Description: Pyridoxal phosphate biosynthesis protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-88  295.2   0.0    5.8e-88  295.0   0.0    1.0  1  PdxA      Pyridoxal phosphate biosynthetic protein PdxA
  ------ inclusion threshold ------
      0.029   13.5   0.0       0.15   11.2   0.0    1.9  2  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> PdxA  Pyridoxal phosphate biosynthetic protein PdxA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.0   0.0   6.4e-92   5.8e-88      44     282 .]      42     284 ..      15     284 .. 0.93

  Alignments for each domain:
  == domain 1  score: 295.0 bits;  conditional E-value: 6.4e-92
                 S...BTTB--HHHHHHHHHHHHHHHHHHHTTSSSEEEE----HHHHHHTT---SSHHHHHHHHTTS..SGSEEEEEETTEEEEESS-SS-GGGHHHH-- CS
        PdxA  44 e..veagkvsaesGaaalaslekAvelakegevdalvtaPinKeaikaaglkfpGhtellaeltgt..kkvvmmlaseeLrvalvTthipLkevakait 138
                 +  +e+gk+s++s++aa ++le+A +l +++e++a+vt P++K ++ + g+++pG+te++a+++g+  +kv+m + s++L   l++th++L+e+++ait
  CCG92113.1  42 KtkFEPGKLSPSSAEAAWQALEEAFKLWEKKEIQAIVTSPVHKGNLFQIGFPYPGQTEFFASKLGVpkEKVIMAMSSPKLHLSLLSTHLSLQEAIQAIT 140
                 23369************************************************************96679***************************** PP

                 HHHHHHHHHHHHHHHHHTTT.SSSEEEEE-SSGGGGTTTTTSSHHHHTHHHHHHHHHHCTHEEEEEE-HHHHTSHHHHTT-SEEEESSHHHHHHHHHHH CS
        PdxA 139 kerllevlrllakalkrdfgiekpriaVaGLNPhaGenGllGrEEeeiiepaiekaraegievegplpaDtlFtkaalkkydavvamYHDqgliplKll 237
                 k++++ +  ll + lk+    ++ +ia+aGLNPh+Ge G++G+EE+e  epaie+++++g+ vegpl++D++F +a ++kyd vva YHDqglip+K++
  CCG92113.1 141 KDKIKLAAVLLLEFLKKLKSKSSLKIAIAGLNPHSGEMGHFGKEEHESYEPAIEELKRSGLLVEGPLSPDSVFKEALQGKYDGVVASYHDQGLIPFKIV 239
                 *****************66666789************************************************************************** PP

                 HTTTEEEEEESSSSEEEEESS-S-TTCTTTT---THHHHHHHHHH CS
        PdxA 238 afdegvnvtlGLpiirtSvDhGtafdiagkgkadekSlleAiklA 282
                 +f +gvnvtlGLp+irtS+DhG a diagk+kad++Sl++AiklA
  CCG92113.1 240 SFYSGVNVTLGLPLIRTSPDHGVAIDIAGKNKADPRSLIAAIKLA 284
                 *******************************************98 PP

>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.055     5e+02       7      23 ..      13      29 ..       7      85 .. 0.69
   2 ?   11.2   0.0   1.6e-05      0.15     274     300 ..     258     284 ..     244     293 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.055
                ESTTHHHHHHHHHHHHH CS
      Iso_dh  7 gdgiGpevveaalkvlk 23
                  giGpe+v++al+  k
  CCG92113.1 13 PAGIGPEIVSKALQCNK 29
                5699****999988644 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 1.6e-05
                 ESS---CCCTTSS-S-THHHHHHHHHH CS
      Iso_dh 274 avHGsapdiagkdkaNpiavilSaalm 300
                 + HG a diagk+ka p + i ++ l 
  CCG92113.1 258 PDHGVAIDIAGKNKADPRSLIAAIKLA 284
                 78*******************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1968.31
//
Query:       CCG92114.1  [L=427]
Description: Acetylglutamate kinase and N-acetylglutamate synthase family enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-25   89.1   0.5    4.4e-25   88.7   0.5    1.2  1  AA_kinase        Amino acid kinase family
    3.5e-09   36.9   0.0    7.5e-09   35.8   0.0    1.6  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.3e-08   34.9   0.3    4.4e-08   33.1   0.1    1.9  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
      2e-08   34.5   0.1    7.9e-08   32.6   0.1    2.1  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0016   18.6   0.1     0.0063   16.7   0.1    2.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.046   13.8   0.0       0.19   11.8   0.0    2.0  1  Acetyltransf_9   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.5   1.5e-28   4.4e-25       1     241 []      19     251 ..      19     251 .. 0.86

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 1.5e-28
                 TEEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHH.TCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTH CS
   AA_kinase   1 krvVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGggsftdgllal.ksglssgelaaglrstleeagevatrdalaslgerlvaallaagl 98 
                 k++V+++ G++ +  e+  + +l+ ++a l++  +k+v+VhG  ++  +l+ l   +ls++    g+  t++++ e+   +a  ++  ++++al a+ l
  CCG92114.1  19 KVFVIAIDGAIAA-SEN--FPNLVLDLAVLRSVAIKVVLVHGIAHQLKQLSLLlHTDLSDTT---GIGITDQKTHELSL-IASSKVTFQILEALSASDL 110
                 5789999999777.444..8***********************9999999999444444444...55688888777666.6677777788888888888 PP

                 GEEEE-GGGTCEECCCE....HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCT CS
   AA_kinase  99 pavglsaaaldateagr..degsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpd 195
                 +a+  +a   +++      d++ +g++ ++d   ie ll+++++pv++++ g+d eg+++r++sD +a + Ae l+A+kli+lt  +G++d+++     
  CCG92114.1 111 RACATNAIIAHPFGIVSgiDYQLTGRINKIDVPFIEYLLQKNIIPVIGPI-GFDGEGKSYRINSDAVAQCMAESLHAEKLIYLTTYPGILDNEG----- 203
                 88888888888776666********************************6.6****************************************98..... PP

                 TCECCEEEHHHCHH...CSSS.TTTHHHHCHHHHHHHHHCTT-EEEEEE CS
   AA_kinase 196 arllpeisvdeaee...saselatgGmkvkhpaalaaarrggipvvItn 241
                   l++e++v+ a+e   + s+      ++k++ a+ a+++g+ +v+I++
  CCG92114.1 204 -NLIRELDVQAAQEfhkNFSKSQPEQLRSKLEHAIHACKNGVNRVHIID 251
                 .66777777777777777777789***********************86 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   2.5e-12   7.5e-09      12      99 ..     296     381 ..     285     396 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2.5e-12
                     THHHHHHHHHHHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEE CS
  Acetyltransf_1  12 ffppnedaseeefeesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivl 99 
                     ++p ++d+ + + +    ++  +++v e d +++G++ ++++p   +  a++  l V++++ ++G+G++++ ++e+ a ++g+k ++l
      CCG92114.1 296 QEPIESDEILPRKAGDIARDLQSYYVFELDKQIVGCMAVYPYPK--TSQAELACLSVAKSHENQGIGRKMIHYAEKLASQQGFKQLFL 381
                     444444444444333322233478889***************99..89***********************************99977 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.74   2.2e+03       8      39 ..     212     243 ..     206     283 .. 0.57
   2 !   33.1   0.1   1.5e-11   4.4e-08      33     111 ..     319     401 ..     308     404 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.74
  Acetyltransf_10   8 egietfkefisp...ealrerieegealllvaeeg 39 
                      +++++f++  s+   e+lr+++   e+ ++++++g
       CCG92114.1 212 QAAQEFHKNFSKsqpEQLRSKL---EHAIHACKNG 243
                      5556664433441224444444...5555555554 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 1.5e-11
  Acetyltransf_10  33 llvaeeggkivGvielrdgs.....hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavge 111
                      ++v+e +++ivG+ +++        +++ l V++++  qGig+++++++e+ a+++g k +l + ++++ v f +k GFk+ ++
       CCG92114.1 319 YYVFELDKQIVGCMAVYPYPktsqaELACLSVAKSHENQGIGRKMIHYAEKLASQQGFK-QLFLLSTRAYVYFMQKGGFKEADP 401
                      789999********98444447789*******************************999.********************9876 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   2.7e-11   7.9e-08       4      75 ..     318     397 ..     315     398 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 2.7e-11
                     EEEEEEETTEEEEEEEEEEES....TCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEEEEEEEE.THHHHHH.HHHHTTEE CS
  Acetyltransf_7   4 evfVaeddgkivGfialslld....aeitrlaVdpeyrgkGiGraLleaae.....kgiileqlel.naekaik.fYeklGFe 75 
                     +++V e d++ivG++a++++     ae+ +l V++++ ++GiGr+++ +ae     +g++  ql l ++ +a   f +k GF+
      CCG92114.1 318 SYYVFELDKQIVGCMAVYPYPktsqAELACLSVAKSHENQGIGRKMIHYAEklasqQGFK--QLFLlST-RAYVyFMQKGGFK 397
                     6899****************9998888888*****************9733355566643..4455343.4444477888887 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   2.1e-06    0.0063      52     115 ..     319     380 ..     280     400 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.1e-06
  Acetyltransf_4  52 flvae.sdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienll 115
                     + v+e + +ivG +++  + +  k+ +ael  + + +  +++g+gr++i + e+ +++q++++l+
      CCG92114.1 319 YYVFElDKQIVGCMAVY-PYP--KTSQAELACLSVAKSHENQGIGRKMIHYAEKLASQQGFKQLF 380
                     778888999***99999.555..5777777777666889***********************997 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.2e-05      0.19       2     120 ..     280     389 ..     279     399 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.2e-05
                     EEEE-GGGHHHHHHHHHHHTT----H..HHHHHHHHHHTTSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHH CS
  Acetyltransf_9   2 irelteedldevlellkyaFqdeespleeireyfrklleesrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLla 96 
                     ir+++++d+ ++l+l ++  + +e      r++ +   + + +++ e + ++vg++a++p+  +        a ++  +va  h ++g+ +k+++
      CCG92114.1 280 IRPARKKDIGAILKLIQEPIESDEILP---RKAGDIARDLQSYYVFELDKQIVGCMAVYPYPKT------SQAELACLSVAKSHENQGIGRKMIH 365
                     899999999999999999888888875...455566666677777777*************854......4567778899999999999999999 PP

                     HHHHHHHHTT--EEEE--SSHHHH CS
  Acetyltransf_9  97 raleemreegqplsllfPssipiY 120
                     +a + + ++g +  +l  +++ +Y
      CCG92114.1 366 YAEKLASQQGFKQLFLLSTRAYVY 389
                     999888888877777776444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2947.19
//
Query:       CCG92115.1  [L=194]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-14   53.9   0.0      3e-14   53.2   0.0    1.3  1  Fer4_23   4Fe-4S iron-sulfur cluster binding domain
    1.1e-09   38.2   0.0    1.8e-09   37.4   0.0    1.4  1  DR2241    DR2241 stabilising domain


Domain annotation for each model (and alignments):
>> Fer4_23  4Fe-4S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   3.3e-18     3e-14       7      82 .]     112     184 ..     108     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 3.3e-18
     Fer4_23   7 tslretaeRQtGiYavvkkltdeqaervvealCadsvClkrrlWavekgeklevegaagelP..CaEaCslfvaaaRk 82 
                 +s++et+ RQ G+Y+v++k +d  a++ vealC + +Cl++ lW+    e l+ ++    +P  C EaC lf++++Rk
  CCG92115.1 112 VSFQETIGRQIGMYKVIEKEADSIADETVEALC-RVKCLRKNLWHGMYSE-LKEDA---SIPlvCLEACPLFLEHSRK 184
                 789******************************.899*******986655.33333...37777***********997 PP

>> DR2241  DR2241 stabilising domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0     2e-13   1.8e-09      37     108 ..      33     102 ..       4     105 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 2e-13
                 EGGGTT--GGGSEEE-SHHHHHHHTSB-TTS-B-SSTTBS---SSEE.EEE-TTTHHHHHHHHSTTHHHHHH CS
      DR2241  37 haddegadeeeletyddpedaRelvrldeegryRPlktaptlprGWrfavldeadlveavellYPAtvenwy 108
                 + +d+   +++l  +   +d++   r+de+g yRPlk+   + rGW++  +d + l  a+e++YP + ++w+
  CCG92115.1  33 NRKDQ--WNDSLVCLPSLLDLKLYLRQDEQGYYRPLKAEMGILRGWKYGPVDCQGLFYAIEAIYPFALTHWF 102
                 55553..345677777778999999**********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1387.34
//
Query:       CCG92116.1  [L=278]
Description: Sirohydrochlorin ferrochelatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-22   77.3   0.0    1.2e-11   44.9   0.0    2.1  2  CbiX      CbiX


Domain annotation for each model (and alignments):
>> CbiX  CbiX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   6.6e-16   1.2e-11       1     106 [.      20     123 ..      20     124 .. 0.90
   2 !   30.7   0.0   1.7e-11   3.1e-07       1     106 [.     149     260 ..     149     261 .. 0.85

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 6.6e-16
                 -ST.SSCCHHHHHHHHHHHHHHHCCSCCCEECESCCCECCSCCSSHHHHC-SBSEEEEEEESSSSSHHHHTHHHHHCT--SSSS-.TTEEEEE---CCC CS
        CbiX   1 HGS.rdpesneeveklaeelrekgpfkpvelgfleleepsleealrelaeqgvkrivvvPlflfaGvhvkeDIpeeleeaeeahp.kdveieytepLGt 97 
                 HGS  + e+  +v+  ae++r+k+ f+ v   f + eeps++++l ++     + i+vvP+fl++G++++++Ip+e++ +   +  ++  + y++++G+
  CCG92116.1  20 HGSlYNSEAALPVYINAEKIRNKKLFENVYETF-WKEEPSFHQTLLSI---PSSLIYVVPFFLSHGFFTTKVIPSEMGIEGPVTRmGKKMVSYCRAVGE 114
                 8997778999999999*****************.99*******99666...99************************9665555546788********* PP

                 SCCHHHHHH CS
        CbiX  98 hplvaevlk 106
                 +p+v e+++
  CCG92116.1 115 NPRVSELII 123
                 ******997 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 1.7e-11
                 -ST.SSCCHHHHHHHHHHHHHHHCCSCCCEECESCCCECCSCCSSHHHHC-SBSEEEEEEESSSSSHHHHTHHHHHCT--SSSS-.........TTEEE CS
        CbiX   1 HGS.rdpesneeveklaeelrekgpfkpvelgfleleepsleealrelaeqgvkrivvvPlflfaGvhvkeDIpeeleeaeeahp.........kdvei 89 
                 HG+ ++ +s+e+ + + + l++kg fk+ ++ fle eep++    + +   + k i++vP+f+++G h   D+p++++  ++            +++ +
  CCG92116.1 149 HGTkKNVHSKETTYLHWKILQQKGIFKECHVFFLE-EEPRISSWKEYV---RSKYIFTVPFFISEGDHSYVDVPKLMGIKKSLRTsaisypqdvEGRYV 243
                 99955589999999999******************.99***9977666...8999********************88855555555666665555777* PP

                 EE---CCCSCCHHHHHH CS
        CbiX  90 eytepLGthplvaevlk 106
                 +yt+++Gt + + +v+ 
  CCG92116.1 244 WYTKAVGTMEGMEQVIL 260
                 ************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1921.39
//
Query:       CCG92117.1  [L=324]
Description: Fructose-bisphosphate aldolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-81  271.7   0.0    1.3e-80  270.9   0.0    1.3  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II
  ------ inclusion threshold ------
      0.097   12.9   0.0       0.18   12.0   0.0    1.4  1  DUF4451        Domain of unknown function (DUF4451)
       0.18   11.3   0.2       0.33   10.5   0.2    1.3  1  DUF533         Protein of unknown function (DUF533)


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.9   0.0   2.2e-84   1.3e-80       3     279 ..       5     306 ..       3     307 .. 0.92

  Alignments for each domain:
  == domain 1  score: 270.9 bits;  conditional E-value: 2.2e-84
                    HHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHT...-EEEEEE----GHHHHHHHHHH CS
  F_bP_aldolase   3 lkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyaggaealaelvraaaeaykkasvpvalhlDHgakleglkkaiea 98 
                    + el+k A+ +++avga+n++n+e++++++++  +++sP I+q+s+ga++++  + ++l +++raa   y+  +   ++hlDHg++ e++ ++i++
     CCG92117.1   5 AAELFKVAY-GKFAVGAYNINNMEQTHGLFRGGIQSQSPFIIQISKGARKYA--DKRMLEAMIRAAEAIYP--EAVFVVHLDHGDE-ETCYDCIDS 94 
                    567777777.99************************************9555..89************999..7999*******76.********* PP

                    S.-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------TT-TT..TS--HHHHHHHHHHHH-EEEE--SS---SS--SS....- CS
  F_bP_aldolase  99 g.fsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgvvaeek..lyTdpeeaeefveetgvdalAvaiGnvHGvykpk.pk.L 189
                    g +sSvMiD+S++p+e+N+++t++vveraha gvsvEaElG +gg e++v++ee   ++Tdpe+a+efv+ tg+d+lA+aiG++HG+yk+k  + +
     CCG92117.1  95 GfYSSVMIDASHEPFEKNVEITRRVVERAHAKGVSVEAELGMLGGVEEDVKVEEGhaCLTDPEQAKEFVRLTGCDSLACAIGTSHGAYKFKgKQsI 190
                    83699******************************************9994444446*********************************96336* PP

                    -THHHHHHHHHH..--SEE-SGTTS-HH......................HHHHHHHTTEEEEEE-HHHHHHHHHHHHHG....GE-HHH-HHHHH CS
  F_bP_aldolase 190 dferlkeiqkav..vplVlHGgsgvpde......................eirkaiklGvvKiNidtdlrlaytkavkke....kenkkydprkll 257
                    +f++l++iqk +  +plV+HG+s+vp++                      e+  a+klGv+KiNidtd rl +t+  +++    +e++  d r   
     CCG92117.1 191 RFDVLEKIQKNLpgFPLVMHGSSSVPKSeimrinaaggkldpsacgvddnEYLPAAKLGVTKINIDTDGRLVWTRVHREYlrdhPEEF--DFRGPG 284
                    *****************************************************************************88876444555..888889 PP

                    HHHHHHHHHHHHHHHHHTT-SS CS
  F_bP_aldolase 258 keaeeamkevvkekiellgsag 279
                    +  + ++++ ++++ e lgsa+
     CCG92117.1 285 RVFMTEYANFIASRSEKLGSAN 306
                    9999999999999999999987 PP

>> DUF4451  Domain of unknown function (DUF4451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     3e-05      0.18      37      81 ..      11      56 ..       4     106 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
     DUF4451 37 ekflklknssye.khlsfeHGvlsngslvpePillrskkrrkakek 81
                + + k+  ++y+ ++++++HG++  g++ ++P++++ +k  +++ +
  CCG92117.1 11 VAYGKFAVGAYNiNNMEQTHGLFRGGIQSQSPFIIQISKGARKYAD 56
                55667888999999*********************77766655554 PP

>> DUF533  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   5.5e-05      0.33      36      84 ..      12      69 ..       5      69 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.5e-05
      DUF533 36 alGglAykayqnwqanqq.....eaapqsapk.f.q.e..eeeekaelllrAmiaAAkA 84
                a G  A+ ay+  + +q+         qs++  + q +  +++   +++l+Ami AA+A
  CCG92117.1 12 AYGKFAVGAYNINNMEQThglfrG-GIQSQSPfIiQiSkgARKYADKRMLEAMIRAAEA 69
                567788888884444444567742.333333323455346899999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2297.41
//
Query:       CCG92118.1  [L=99]
Description: RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-25   88.1   0.0    2.9e-25   87.9   0.0    1.1  1  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    1.9e-06   27.5   0.0    2.4e-06   27.2   0.0    1.1  1  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    0.00013   21.7   0.0    0.00023   20.9   0.0    1.3  1  RRM_occluded  Occluded RNA-recognition motif
      0.004   17.2   0.0      0.012   15.8   0.0    1.8  1  RRM_7         RNA recognition motif
  ------ inclusion threshold ------
       0.02   15.1   0.1      0.062   13.5   0.1    1.7  2  PHM7_cyt      Cytosolic domain of 10TM putative phosphate tra
      0.058   13.5   0.2       0.15   12.1   0.2    1.7  1  Limkain-b1    Limkain b1
      0.079   13.0   0.0       0.14   12.2   0.0    1.5  1  RNA_bind      RNA binding domain
       0.14   12.2   0.0       0.18   11.9   0.0    1.2  1  RRM_3         RNA binding motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   1.3e-28   2.9e-25       1      69 [.       6      75 ..       6      76 .. 0.99

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 1.3e-28
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69
                l+VgnLp+ ++e++L+elF+++G++++i+l+ d  tg+s+gfafV++e++ +A++A+++lng+ + gr++
  CCG92118.1  6 LYVGNLPFRISENDLRELFEQYGQVNEINLIVDkMTGQSRGFAFVTMETSQAAQSAIDSLNGTSISGRQI 75
                8*******************************************************************98 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.1e-09   2.4e-06      38     117 ..      14      95 ..       5      98 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.1e-09
       RRM_5  38 kvnldklFnlfclYgnvervkflktk.....ketalvqmgdasaveravqHLnnaklfgkrlevalSKqqavsekepfeleddsp 117
                 ++  + l  lf +Yg+v+ + ++  k     ++ a+v m  ++a++ a++ Ln++++ g+++ v   K ++   ++p+   ++s+
  CCG92118.1  14 RISENDLRELFEQYGQVNEINLIVDKmtgqsRGFAFVTMETSQAAQSAIDSLNGTSISGRQIVVNEAKPRE---ERPHRHRENSG 95 
                 566778889***********99887644434689******************************9999887...67777777665 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     1e-07   0.00023       6      70 ..       8      77 ..       4      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1e-07
  RRM_occluded  6 llplsDtvnkariralveekegeikkivLvpdheG......AivefkdekiagkasLaLdgsefegkklrc 70
                  + +l+ +++++ +r+l+e++ g++++i L  d+        A+v ++ +++a  a+ +L+g++++g+++ +
    CCG92118.1  8 VGNLPFRISENDLRELFEQY-GQVNEINLIVDKMTgqsrgfAFVTMETSQAAQSAIDSLNGTSISGRQIVV 77
                  568999**************.99999999988643244446**************************9976 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.2e-06     0.012       3      66 ..       5      61 ..       3      78 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.2e-06
       RRM_7  3 kvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaL 66
                +++vG lP  i+e++l + f+++g+v        e +    + + + +g++f+  e+ ++ ++ 
  CCG92118.1  5 RLYVGNLPFRISENDLRELFEQYGQVN-------EINLIVDKMTGQSRGFAFVTMETSQAAQSA 61
                689*********************984.......222222222233456666666666666655 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.24   5.4e+02       8      31 ..      10      32 ..       5      38 .. 0.71
   2 ?   13.5   0.1   2.8e-05     0.062     109     166 ..      32      80 ..      17      89 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.24
    PHM7_cyt  8 giPkelrseeklkeffeelypgkv 31
                ++P   + e++l+e+fe++ + ++
  CCG92118.1 10 NLPFRIS-ENDLRELFEQYGQVNE 32
                6666666.788******9976544 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.8e-05
    PHM7_cyt 109 eieeerekvkkkplgaaFvtfesersaaavakqakcaaqiqqssnptl.kpkkwtvelA 166
                 ei+   +k + + +g aFvt+e++++a+++++          s+n t  + ++++v+ A
  CCG92118.1  32 EINLIVDKMTGQSRGFAFVTMETSQAAQSAID----------SLNGTSiSGRQIVVNEA 80 
                 45555566677899**********99999974..........33333344555555544 PP

>> Limkain-b1  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   6.8e-05      0.15       5      82 ..       6      85 ..       2      93 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.8e-05
  Limkain-b1  5 lvvsnLPtnrdklkkaiknrLrrLsdncG.........GkvlsisgksavlrfanqeaaeralkrleneDvfGnritvsekprnkev 82
                l+v nLP          +n Lr L++  G          k+ + s + a + ++  +aa+ a+  l++  + G +i v+e  +++e 
  CCG92118.1  6 LYVGNLPFRIS------ENDLRELFEQYGqvneinlivDKMTGQSRGFAFVTMETSQAAQSAIDSLNGTSISGRQIVVNEA-KPREE 85
                77888887766......56666666666522111111134445566678899999999********************986.55544 PP

>> RNA_bind  RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.1e-05      0.14      16      63 ..      11      66 ..       1      77 [. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.1e-05
                --TT--HHHHHHHTTTSEEEE.EEEEETTE.......EEEEEEEE-HHHHHHHHHT CS
    RNA_bind 16 FPkeWktsDivqlFspfGsvy.vsWlddts.......AfvaLhrrdqasvvlktlk 63
                 P    ++D+ +lF+++G+v  ++ + d         Afv+++  ++a++++++l+
  CCG92118.1 11 LPFRISENDLRELFEQYGQVNeINLIVDKMtgqsrgfAFVTMETSQAAQSAIDSLN 66
                66667789***********9546665553212236669***********9999985 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     8e-05      0.18      13      60 ..      15      68 ..       8      87 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8e-05
                --HHHHHHHCHCCS-ECEEEE-TTSSEEE......EEESSHHHHHHHHHHHHHC CS
       RRM_3 13 lsredikellsklgevayvdyekgdkege......vrFkedeeakkalekatea 60
                +s +d++el++++g+v+ +++  ++ +g+      v  +++++a+ a++++  +
  CCG92118.1 15 ISENDLRELFEQYGQVNEINLIVDKMTGQsrgfafVTMETSQAAQSAIDSLNGT 68
                6789**********9987766666666651111225567777889888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 753.90
//
Query:       CCG92119.1  [L=262]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.5e-102  342.3   0.0   1.7e-102  342.1   0.0    1.0  1  YmdB         YmdB-like protein
    1.1e-05   26.0   0.0    1.4e-05   25.7   0.0    1.1  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> YmdB  YmdB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.1   0.0  1.9e-106  1.7e-102       2     253 .]       5     255 ..       4     255 .. 0.99

  Alignments for each domain:
  == domain 1  score: 342.1 bits;  conditional E-value: 1.9e-106
        YmdB   2 fiGDvvgkpGreavkeeLpklkkeykidfviangEnaaggkGltkkeaeellkagvdviTlGnhvwdkkeilelieeeerllrPaNypegapGkglvvv 100
                 f+GDvvg++Gre+++e++pk+k+ y++df+iangEnaagg+G+t+k++ e+l++g+dviTlG+h+wd+kei+++i++e+rllrP+Nyp+++pG+g+++v
  CCG92119.1   5 FFGDVVGETGREVLREAIPKIKSLYQPDFIIANGENAAGGNGITPKITYEFLRLGIDVITLGDHAWDQKEIVSFIQDEPRLLRPINYPPETPGEGYIIV 103
                 99************************************************************************************************* PP

        YmdB 101 evkgkkvaVinllGrvfmeekldnpFeaadelleklekekadiiivDfhAeaTsEKialglyldgrvsavvGTHthvqTaDerilpkgtayitDvGmtG 199
                 + +gkk+aV+  +Gr+fm +++dnpF + ++++++l+k ++++i+vDfhAeaTsEKia+g +ldg vsavvGTHthvqTaDe+i+p+gtayitDvG++G
  CCG92119.1 104 KGNGKKLAVLCAIGRTFMIPQTDNPFLISKKIITELHK-ETPCIFVDFHAEATSEKIAFGRFLDGSVSAVVGTHTHVQTADETIFPGGTAYITDVGFCG 201
                 ************************************66.67********************************************************** PP

        YmdB 200 pedsviGvekeevikrfltglperfevaegeatlngvlieideetgkatsieri 253
                 ++dsviG e   +i r++t lp++f  a+++ + ng+++ei+e++gka +ieri
  CCG92119.1 202 AHDSVIGREIGPIIYRYTTLLPTKFVLATNNPKANGIFVEIEEQSGKALKIERI 255
                 ****************************9999********************98 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.6e-09   1.4e-05       1     203 [.       1     179 [.       1     180 [. 0.76

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.6e-09
                  EEEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS..HHHHHHHHHHHHHHHHTSEEEEEC-TTSCHHH.HHHHHHHHHHHHHHHH CS
  Metallophos   1 lrilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrg..dlekellellaalvkypipvylllGNHegfee.ellnkygylgifsepw 95 
                  ++++++gD+    g+ + + l++++ ++++  +pd+++ +G +  +g    +k + e+l+  ++     +++lG H  +++ e+ ++ +++ +  +p+
   CCG92119.1   1 MKVVFFGDVV---GETGREVLREAIPKIKSLYQPDFIIANGENAAGGngITPKITYEFLRLGID-----VITLGDHA-WDQkEIVSFIQDEPRLLRPI 89 
                  89*******9...9999*****************************995444435555677777.....********.************99998888 PP

                  EHHHCEEETSEEEEEETTE.EEEEEEESECEEETHHHHHHHHHHHSCHHHHCC..HHHHHH..HHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHH CS
  Metallophos  96 rsdaevfnnlplaslgsgs.lkvlllhGgspellvsldklgslnleleapepg..dewlkd..lekrekadwvivlgHsplyrgsgylfgdealedll 188
                  +++ e+ +  ++++ g+g+ l vl++ G                + + +p+ +   ++ k+  +e  ++++ ++v +H   + +    fg+      +
   CCG92119.1  90 NYPPETPGEGYIIVKGNGKkLAVLCAIG----------------RTFMIPQTDnpFLISKKiiTELHKETPCIFVDFHAEAT-SEKIAFGR------F 164
                  7773333333344444444555555555................5666666665444444467779999*************.55555555......7 PP

                  HHTTESEEEEESSSS CS
  Metallophos 189 kkygvdlvisGHtHv 203
                   ++ v +v++ HtHv
   CCG92119.1 165 LDGSVSAVVGTHTHV 179
                  8889**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2063.27
//
Query:       CCG92120.1  [L=292]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.6   0.1       0.62   10.1   0.0    2.3  3  R3H       R3H domain


Domain annotation for each model (and alignments):
>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.1   1.8e+03       9      29 ..      74      96 ..      71      97 .. 0.70
   2 ?   10.1   0.0   3.5e-05      0.62       8      38 ..     103     133 ..      96     142 .. 0.85
   3 ?   -3.0   0.1      0.42   7.6e+03      34      44 ..     146     156 ..     144     158 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.1
                HHHHHHH-S..--EEE-----SH CS
         R3H  9 klaefvkdt..grslefppmssy 29
                k+a+ +k +  +++++++ ++s+
  CCG92120.1 74 KMAKVIKLSsfKEEVHLEKLNSQ 96
                55555655534699999999985 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 3.5e-05
                 HHHHHHHH-S--EEE-----SHHHHHHHHHH CS
         R3H   8 kklaefvkdtgrslefppmssyeRriiHela 38 
                 k++  fv   g +l ++ +s  eR+++H  a
  CCG92120.1 103 KDIHFFVGPGGDPLNLDKFSEKERKFVHSEA 133
                 788889966679****************866 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.42
                 HHHHHHHSSEE CS
         R3H  34 iHelaeaygle 44 
                  He++++++l+
  CCG92120.1 146 LHEAIHRFDLK 156
                 58888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2056.31
//
Query:       CCG92121.1  [L=122]
Description: Predicted permease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-24   87.4  19.1    1.2e-24   87.2  19.1    1.0  1  TauE      Sulfite exporter TauE/SafE
     0.0042   17.2   3.6      0.033   14.3   0.6    2.3  2  DUF3302   Protein of unknown function (DUF3302)


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2  19.1   1.4e-28   1.2e-24       1     110 [.       6     117 ..       6     122 .] 0.91

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 1.4e-28
        TauE   1 lllagllaGfvagllGiGggliavPlLll.l.lppavavatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpsellkllfg 97 
                 l+l+gl aGf +g++G+Ggg+++vP+L+l + +p +vav+tsl+++++ +l+g++ +   +++dw++++++l++++iGal+G++  + +p+++ k +f+
  CCG92121.1   6 LILLGLTAGFASGCFGVGGGIVIVPALILfFgIPYHVAVGTSLAVIIPIALAGSIFNGWLQKIDWSIVWVILIFGVIGALIGVWSIQKIPANIAKKIFS 104
                 689**************************4466*******************8776544456************************************* PP

        TauE  98 vlllllallmllr 110
                 ++ll++a+++++ 
  CCG92121.1 105 FFLLYSAYRLWIG 117
                 *********9875 PP

>> DUF3302  Protein of unknown function (DUF3302)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.1    0.0084        75      14      32 ..      26      44 ..      23      64 .. 0.87
   2 !   14.3   0.6   3.7e-06     0.033       4      33 ..      72     101 ..      68     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0084
     DUF3302 14 lvlvygiivlhdiPyeiak 32
                +v+v  +i+   iPy++a 
  CCG92121.1 26 IVIVPALILFFGIPYHVAV 44
                57888999999*****996 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 3.7e-06
     DUF3302   4 lalivlivvvlvlvygiivlhdiPyeiakr 33 
                 + +++li+ v+  ++g++ +++iP +iak+
  CCG92121.1  72 IVWVILIFGVIGALIGVWSIQKIPANIAKK 101
                 6799************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       895  (0.0499191); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 852.18
//
Query:       CCG92122.1  [L=414]
Description: putative enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-47  161.6   0.0    3.4e-47  161.4   0.0    1.1  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   0.0   1.9e-51   3.4e-47       2     334 ..      46     373 ..      45     400 .. 0.89

  Alignments for each domain:
  == domain 1  score: 161.4 bits;  conditional E-value: 1.9e-51
                    EEEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEE CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeil 97 
                    +++++g++e++  +     +e++k  +e  +a+ ++ +y ++   + l+ea a++++r  +++++++++++ + G +a++++l+++l +npgd +l
     CCG92122.1  46 ELLDFGVGEPDEPA----TKETVKILAE-EAAKAENRFYADNG-GQRLKEAAARYMQRVCGVTVDPQTEIIHSIGIKAALSILPAAL-INPGDYVL 134
                    5789******9995....5555555555.55669999999998.789****************************************.******** PP

                    EEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTC CS
  Aminotran_1_2  98 vpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagf 193
                    +  p y+ + + ++++gg+v+  +l++e+ f  dle + + + +      k kv++++ p+NPtG+vat+e  e+++++a k++l+++ D+aYag+
     CCG92122.1 135 MTVPGYPVFGTHAQYYGGQVFNLALRKENHFLPDLETVPKEILS------KAKVLVLNYPNNPTGAVATREFFEDVVRFAIKNRLVVIHDFAYAGL 224
                    ********************************************......99******************************************** PP

                    BSSSS..HTHHHHGGSTTSTT.EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 194 vfgsl..davatranveeepn.llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkr 284
                    vf+ +  ++ + +++++   +  + + s sK+f+++G+R+G+++gn+++v++   ++ +  s    + q a a  l++++     +e  +q++ +r
     CCG92122.1 225 VFEGKplSFLS-VPGAK---EvGIELHSASKNFNMTGWRCGFVVGNPKLVKAYGYVKDHTDSgqFLAIQNAYAYCLDHSE----ITERIAQKYSRR 312
                    ***87555444.33333...33599**********************************999777777788888888877....5799******** PP

                    HHHHHHHHHHSTEEEECCSCSSEEEEEETHH...........CHHHHHHHHHHTCTEEEEE CS
  Aminotran_1_2 285 rkelrdeLaelglkvlasqsgmflltdlsae...........takelskkLleevgvyvtp 334
                     + +++ L +lg+k  ++++ +fl+t+ ++            ta++l + L++e+ +  +p
     CCG92122.1 313 MDLMVETLGSLGFKAEKPKASFFLYTEAPKGvryhskeiwfqTAEDLTEWLIQEKLISTVP 373
                    ***************************9999999997788777777777799997666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2952.07
//
Query:       CCG92123.1  [L=694]
Description: Rad3-related DNA helicase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-39  135.6   0.0    4.4e-39  134.4   0.0    1.7  1  Helicase_C_2    Helicase C-terminal domain
    2.1e-09   37.6   0.7    2.8e-08   34.0   0.4    2.5  2  ResIII          Type III restriction enzyme, res subunit
    1.4e-08   34.7   0.1    5.1e-06   26.4   0.1    3.6  4  DEAD            DEAD/DEAH box helicase
    2.5e-06   27.8   0.0    6.8e-05   23.2   0.0    2.6  1  Helicase_C      Helicase conserved C-terminal domain
     0.0001   22.0   0.0     0.0003   20.5   0.0    1.7  2  DEAD_2          DEAD_2
     0.0026   17.2   0.0       0.02   14.4   0.0    2.1  2  PhoH            PhoH-like protein
     0.0053   15.9   0.0     0.0091   15.1   0.0    1.3  1  T2SSE           Type II/IV secretion system protein
  ------ inclusion threshold ------
      0.043   14.4   0.1         15    6.2   0.0    2.5  2  Host_attach     Protein required for attachment to host cells
       0.05   13.6   0.2       0.26   11.3   0.0    2.0  2  DNA_photolyase  DNA photolyase
       0.14   12.4   0.0        1.9    8.8   0.0    2.4  2  AAA_22          AAA domain
       0.27   11.0   0.1       0.69    9.6   0.0    1.7  2  AAA_30          AAA domain


Domain annotation for each model (and alignments):
>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.0   2.7e-42   4.4e-39       1     170 [.     523     687 ..     523     688 .. 0.98

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 2.7e-42
  Helicase_C_2   1 llellevvpggvlvffpSyklleevverlkeeleskkieifveekeesrekvleeykekkkkgaillavcrGklsEGidfsddllraviivglPfpn 97 
                   + +l++++ g +lv+f++ k+l ++ve+l+++  + +++++v++++ sr+k+l+ +ke   k++il+++   +++ Gid+++d+l++vii++lPf +
    CCG92123.1 523 IERLVKQTAGSALVLFTNRKTLANMVEALSSKFAELGFPLYVQDGKTSRHKLLKLFKE--AKHSILFGMD--SFWQGIDVPGDSLKNVIITKLPFSS 615
                   578999****************************************************..**********..************************* PP

  Helicase_C_2  98 pkdpeveakreyldekgkknsgkewylpealravnQaiGRliRhkdDygaivllDeRfakeeireklpkwlre 170
                   p+ p+v+ak e l+++g  n++ ++ lpea+ +++Q+iGRliR+k+D+g++ +lD+R+ ++++++ +++++++
    CCG92123.1 616 PDHPQVQAKCEKLEKQGL-NAFVHYSLPEAVLKFRQGIGRLIRSKEDKGIVAVLDSRILSKSYGKIFLNSIPN 687
                   ******************.*************************************************99986 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.4   1.7e-11   2.8e-08       2     146 ..      65     287 ..      64     304 .. 0.67
   2 ?   -4.1   0.0       8.4   1.4e+04      46      68 ..     524     546 ..     518     566 .. 0.56

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.7e-11
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHH.HHG......................... CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtl.eef......................... 74 
                 +e r+ Q+++ e++ ++l+  ++k+++++++TGtGK+l ++ ++  + +k+  ++ ++  ++++l +q+l +++                         
  CCG92123.1  65 FEYRPQQKQMAEAIYKSLQ--KRKHLIVEAPTGTGKSLAYLLAALCYCQKNA-QRGVISTHTLNLQDQLLhKDIpllkkifpkefsvvllkgrqnyicp 160
                 789***************5..9******************888888888755.699999***********73335554444555566666666555555 PP

                 ............GGGTGG....GEEEESSS-B--.......................................................-SEEEEEHHH CS
      ResIII  75 ............kkflseaykeigkkvsgdkkka................................................kekdstnkkilvttiqs 113
                                                  +                                                +  ++  + ++++ +qs
  CCG92123.1 161 krlekvlkhatdL--------------------FpsfemteimriydwsvrtqtgdieelhplpsfnlwsqicsepgichprNCANNPRCFYHLFREQS 239
                 5554444444320....................133333333333333333334455566677777777777777788887655555566777777777 PP

                 HHHTH.........................HHHTTT-SEEEEETGGGTTS CS
      ResIII 114 ldadseee.................eeeseellrdrfdviiiDEaHrlga 146
                 +++d+  +                 + ++ee l+  ++++i+DEaH + +
  CCG92123.1 240 AHSDL--TivnhalyfsllgrttdsQLQKEEGLPFGENFVIFDEAHTIEK 287
                 77777..3347777777776555444444444455555********8765 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 8.4
                 HHH-S.....-EEEEESSHHHHH CS
      ResIII  46 erllkkgkeekflflvprkslle 68 
                 erl k+   +  +++ +rk+l +
  CCG92123.1 524 ERLVKQTAGSALVLFTNRKTLAN 546
                 55555555555555555555543 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   3.1e-09   5.1e-06       3      74 ..      70     141 ..      68     171 .. 0.78
   2 ?    2.3   0.0     0.078   1.3e+02     123     135 ..     275     287 ..     236     301 .. 0.79
   3 ?   -1.0   0.0      0.79   1.3e+03     158     170 ..     456     468 ..     431     472 .. 0.82
   4 ?    0.1   0.0      0.36   5.9e+02      35     102 ..     522     587 ..     514     597 .. 0.66

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 3.1e-09
                 HHHHHHHHHH....TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTS CS
                 xxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplil....gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyi 74 
                  Q+++ ++i+    + ++++v+a+TG+GK+la+l+++l       +k++ + +i + t  L  q l++   ++k+i
  CCG92123.1  70 QQKQMAEAIYkslqKRKHLIVEAPTGTGKSLAYLLAALCYC----QKNAQRGVISTHTLNLQDQLLHKDIPLLKKI 141
                 56677677765555668*********************666....799999***********99998866666654 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.078
                 EEEEEETHHHHHH CS
                 xxxxxxxxxxxxx RF
        DEAD 123 rflVlDEadrlld 135
                 +f+++DEa+++ +
  CCG92123.1 275 NFVIFDEAHTIEK 287
                 69*******9875 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.79
                 TTSEEEEEESSBS CS
                 xxxxxxxxxxxxx RF
        DEAD 158 lqrqvivlSATlp 170
                 ++  vi+ SATl+
  CCG92123.1 456 KEVSVIMTSATLK 468
                 34569******97 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.36
                 HHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH.H.TTCSEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxx RF
        DEAD  35 vlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl.d.ngvdivv 102
                  +++++   ++t+  al++   r+   ++++ l++ + +++  +  +  g++ r++l kl + ++  i++
  CCG92123.1 522 WIERLV---KQTAGSALVLFTNRKTLANMVEALSSKFAELGFPLY-VQDGKTSRHKLLKLfKeAKHSILF 587
                 444443...577789999999999999999999999988885554.445555566665552213355555 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   4.2e-08   6.8e-05      12     109 ..     528     657 ..     517     659 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.2e-08
                 HTTTTSEEEEEESSHHHHHHHHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTST..TESEEEESSSSSSH........ CS
  Helicase_C  12 leeeggkilifvntidrlekvklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidip..kvnlVinfdlprnv........ 97 
                 ++  g+  ++f+n+++ +++v+ l +k+   g+   v +g   + +r + l+ f++ ++ +L   d   +Gid+p  ++++Vi+  lp++         
  CCG92123.1 528 KQTAGSALVLFTNRKTLANMVEALSSKFaelGFPLYVQDG---KTSRHKLLKLFKEAKHSILFGMDSFWQGIDVPgdSLKNVIITKLPFSSpdhpqvqa 623
                 4455556666777777665588998888655666666666...999*********99*****************965699********88545556666 PP

                 ......................HHHHHHHTTSSS CS
  Helicase_C  98 ......................tsyiqriGRtgR 109
                                        ++ q iGR +R
  CCG92123.1 624 kceklekqglnafvhyslpeavLKFRQGIGRLIR 657
                 6666666666666666666666666666666655 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.2   5.2e+03      26      48 ..     143     165 ..     129     173 .. 0.67
   2 !   20.5   0.0   1.8e-07    0.0003     105     172 ..     225     298 ..     217     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.2
                 HS---EEEE--CCCC-SCHHCCC CS
      DEAD_2  26 kekvkvviLgSRknlCineevkk 48 
                  +++ vv L++R+n+   ++++k
  CCG92123.1 143 PKEFSVVLLKGRQNYICPKRLEK 165
                 46788899999998755555554 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 1.8e-07
                 HHCT--HHHHHHHHHCCTSEEEEE...HHHHTSCCCHHHHH...T..GCGCEEEECTCCCHHHHHHHCC-EEEE CS
      DEAD_2 105 eklklCPYylsrelledadiiilp...YqyLldekireslk...gislknsivilDEAhNiedvceeaasveis 172
                  ++  C Y l re   + d+ i+    Y  Ll + + ++l+   g+   ++ vi+DEAh ie+++ + + ++ s
  CCG92123.1 225 ANNPRCFYHLFREQSAHSDLTIVNhalYFSLLGRTTDSQLQkeeGLPFGENFVIFDEAHTIEKIASNQLGFSTS 298
                 56778**************99986444788999999999998888999****************9999888766 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.2e-05      0.02       9      60 ..      75     125 ..      67     150 .. 0.67
   2 ?   -0.1   0.0      0.33   5.4e+02     117     132 ..     271     286 ..     263     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-- CS
        PhoH   9 QkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpave 60 
                  ++++++l+k + +++ +p+GtGK++  + +a+  + +k+ +r +++  +++
  CCG92123.1  75 AEAIYKSLQKRKHLIVEAPTGTGKSLAYLLAAL-CYCQKNAQRGVISTHTLN 125
                 234455566999************965555555.555556666555555555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.33
                 -B-SEEEEE-SGGG-- CS
        PhoH 117 TlndafvilDEAQntt 132
                  + + fvi+DEA  ++
  CCG92123.1 271 PFGENFVIFDEAHTIE 286
                 57789*******8776 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.6e-06    0.0091     113     156 ..      69     113 ..      55     127 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.6e-06
       T2SSE 113 alkekiaevlrkavrerglilvsGgTgsGKttl.lyallkeinks 156
                  +++++ae++ k++++r+ ++v  +Tg+GK+   l a+l + +k+
  CCG92123.1  69 PQQKQMAEAIYKSLQKRKHLIVEAPTGTGKSLAyLLAALCYCQKN 113
                 46799*************************974246666665555 PP

>> Host_attach  Protein required for attachment to host cells
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.015        24      98     128 ..     368     398 ..     338     404 .. 0.93
   2 ?    6.2   0.0     0.009        15      78     115 ..     519     556 ..     514     559 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.015
  Host_attach  98 ApPrflGlLrealskelkklvvkevdkdltk 128
                  A P++l+++ e+ls+++++l  ke++ ++t+
   CCG92123.1 368 ALPETLNTIVEKLSHAVANLPDKEIKEEITN 398
                  679***********************99997 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.009
  Host_attach  78 vadrLekaraagkferlvlvApPrflGlLrealskelk 115
                  +a ++e+++++++ ++lvl+ + ++l  + eals++ +
   CCG92123.1 519 LAFWIERLVKQTAGSALVLFTNRKTLANMVEALSSKFA 556
                  7889******************************9875 PP

>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.94   1.5e+03      94     116 ..      63      85 ..      62      93 .. 0.86
   2 ?   11.3   0.0   0.00016      0.26      46      93 ..     539     587 ..     521     591 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.94
                     EE---SHHHHHHHHHHHHHHHHC CS
  DNA_photolyase  94 anreyepdererdeavkealrka 116
                     a++ey p+++++ ea+ + l+k+
      CCG92123.1  63 AHFEYRPQQKQMAEAIYKSLQKR 85 
                     6789**************99975 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00016
                     HHHHHHHHHHHHHHHHHHHTT--EEEEESS.HHHHHHHHHHHCTECEEE CS
  DNA_photolyase  46 arvdfllesLadLdeeLrelgirLvvrrgd.padvlpelakelgasavv 93 
                     ++++ l+  +++L ++++elg +L+v  g+ ++  l +l+ke++ s ++
      CCG92123.1 539 TNRKTLANMVEALSSKFAELGFPLYVQDGKtSRHKLLKLFKEAKHSILF 587
                     56789999*********************87999********9988776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0012       1.9       4      33 ..      84     113 ..      79     168 .. 0.83
   2 ?    0.7   0.0      0.37   6.1e+02      92     106 ..     274     299 ..     228     322 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0012
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeea 33 
                 ++++l+v +++GtGK++ +   +  +++ +
  CCG92123.1  84 KRKHLIVEAPTGTGKSLAYLLAALCYCQKN 113
                 789**************9987777666554 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.37
      AAA_22  92 ielliiDEaqhlr...s........e 106
                   ++i DEa+ +    s        +
  CCG92123.1 274 ENFVIFDEAHTIEkiaSnqlgfstsK 299
                 6799******9965541333333443 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00043      0.69       2      36 ..      67     103 ..      66     131 .. 0.77
   2 ?   -3.4   0.0       4.2   6.8e+03     143     163 ..     171     191 ..     165     199 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00043
      AAA_30   2 lnaeQaaaveallts..gdrvavltGpAGtGKttalk 36 
                 ++++Q++++ea+ +s  +++  ++++p GtGK+ a  
  CCG92123.1  67 YRPQQKQMAEAIYKSlqKRKHLIVEAPTGTGKSLAYL 103
                 7889**9999999874356799***********8654 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.2
      AAA_30 143 aagigtaeLtevvRqkeseer 163
                 ++ +++ e+te++R+ + + r
  CCG92123.1 171 TDLFPSFEMTEIMRIYDWSVR 191
                 45678999******9764444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 5088.13
//
Query:       CCG92124.1  [L=118]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 928.83
//
Query:       CCG92125.1  [L=113]
Description: hypothetical protein MFUM_310046 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 861.92
//
Query:       CCG92126.1  [L=54]
Description: hypothetical protein MFUM_310048 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       161  (0.00897987); expected 358.6 (0.02)
Passed bias filter:                      122  (0.00680462); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 410.52
//
Query:       CCG92127.1  [L=43]
Description: hypothetical protein MFUM_310049 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       147  (0.00819901); expected 358.6 (0.02)
Passed bias filter:                      134  (0.00747392); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 308.22
//
Query:       CCG92128.1  [L=257]
Description: Pseudouridine synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-26   92.2   0.0    4.4e-26   91.9   0.0    1.1  1  PseudoU_synth_2  RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   2.4e-30   4.4e-26       2     159 ..      19     169 ..      18     170 .. 0.94

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 2.4e-30
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssrae.eekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeega 94 
                      + vv+KP    ++p++     k+++++  +   + +++  +kl+hRLD++tsGlll+Ak+ + a+ + +++e+r +rK Y a++ g+   ++ +
       CCG92128.1  19 FAVVDKPPFFLSHPTK-----KKRGFSLLEWLYNqNNQIPWKLIHRLDRETSGLLLVAKNNASAAYFGRQMEKRLIRKGYFAITWGELKADYLK 107
                      78**************.....77777777766553777889********************************************999999*** PP

  PseudoU_synth_2  95 ikkkiskd..tekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                      i++++  +    ++e+  r+  +++g++a+t + +l +g     +++sl+ ++++tG+ hQiRvhl+
       CCG92128.1 108 IEAPLGYLgvSSENEIVIRQGIQSNGSQAITEIYPLGYG-----GGHSLLWVKPQTGKLHQIRVHLS 169
                      *******999999**************************.....*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1862.54
//
Query:       CCG92129.1  [L=337]
Description: Zn-dependent alcohol dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-33  115.3   0.4    1.8e-33  114.7   0.4    1.3  1  ADH_N           Alcohol dehydrogenase GroES-like domain
    4.9e-20   71.8   0.2    7.5e-20   71.2   0.2    1.3  1  ADH_zinc_N      Zinc-binding dehydrogenase
    1.9e-08   35.5   0.0    2.8e-08   34.9   0.0    1.3  1  ADH_zinc_N_2    Zinc-binding dehydrogenase
    0.00034   20.0   0.3    0.00052   19.4   0.3    1.2  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    0.00066   20.3   1.2     0.0023   18.6   0.3    2.2  2  CoA_binding     CoA binding domain
     0.0022   17.4   0.0     0.0037   16.6   0.0    1.4  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
     0.0031   18.3   0.1      0.007   17.2   0.1    1.6  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
     0.0031   16.3   0.0     0.0045   15.8   0.0    1.2  1  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
  ------ inclusion threshold ------
      0.015   15.0   0.4      0.037   13.8   0.1    1.7  2  ELFV_dehydrog   Glutamate/Leucine/Phenylalanine/Valine dehydr
      0.053   13.2   0.1      0.087   12.5   0.1    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
      0.056   13.0   0.0      0.078   12.5   0.0    1.2  1  Peripla_BP_4    Periplasmic binding protein domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   0.4   1.1e-36   1.8e-33       2     109 .]      30     141 ..      29     141 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.7 bits;  conditional E-value: 1.1e-36
                 TEEEEEEEEEEE-HHHHHHHTTS...TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTSS-SSSB CS
       ADH_N   2 gevlikvkaagiCgsDlhilkgg...kelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvsldGgfa 96 
                 +evli+++a+g+C+s lh+++g+   + ++ klp+i+GHEivG++eevg++v+++k GdrV ++pl+s cg+C++C++g+e+lC+ ++++g ++dGg+a
  CCG92129.1  30 DEVLIRTEACGVCRSNLHMIEGDwikRGVPSKLPIIPGHEIVGKIEEVGSRVSHFKNGDRVGLQPLWSsCGRCPYCRTGREQLCPCKEITGETVDGGYA 128
                 89********************988888999*********************************99988****************************** PP

                 SEEEECGGGEEEE CS
       ADH_N  97 eyvvvpekklvkl 109
                 e vv +e++l+++
  CCG92129.1 129 EFVVGKEDFLYPI 141
                 *******999985 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.2   4.6e-23   7.5e-20       1     129 [.     182     301 ..     182     302 .. 0.91

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 4.6e-23
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEEEH CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeefdl 99 
                 gvG++avq+A+ +Ga+via +++++ l++ak+lGa+ +i++   + ++++++l +++++d ++ ++ s+a  ++a++l+kpgG++v+ G+  +  e+ +
  CCG92129.1 182 GVGHMAVQFARLAGATVIALSRNPRHLQIAKELGAHDCIDA---NDSQHLEKLNKEGDIDCAVVFAPSNAIAQQAISLVKPGGKIVL-GV--N-AELGA 273
                 9****************************************...6799999999988****************************97.54..2.32555 PP

                 HHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N 100 rnlllkeksilGsllgslreefkealdlla 129
                 +  + +ek ilG++ g  ree+ke+l+l+a
  CCG92129.1 274 FS-FVEEKVILGTVIGP-REEMKEVLRLAA 301
                 54.6899**********.*******99976 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.7e-11   2.8e-08       1     126 [.     214     328 ..     214     335 .. 0.78

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.7e-11
                   TT-SEEEETT.STTHHHHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfeaatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaal 96 
                   lGA+ +id   ++ +e+  +++ +D ++  + ++a+++++++++++gG++v   +    a+l++ ++ +   +v + +++      +++ ++e+++l
    CCG92129.1 214 LGAHDCIDANdSQHLEKLNKEGDIDCAVVFAPSNAIAQQAISLVKPGGKIVLGVN----AELGAFSFVE--EKVILGTVI---GP-REE-MKEVLRL 299
                   8******9998999986666778*********99999*******88799975334....4666666644..333333333...22.566.******* PP

                   HHHHH----EEEEEEGGGHHHHHHHHHSS- CS
  ADH_zinc_N_2  97 ieeGklrpvvdrvfpleeaaeAhrylesgr 126
                    +eGk++  ++++f+le+a eA+ +l+ g 
    CCG92129.1 300 AAEGKIKA-ISQTFTLEQASEALLKLKRGE 328
                   ******85.778*************99986 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3   3.2e-07   0.00052      30      94 ..     174     237 ..     160     273 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.2e-07
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SE CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadv 94 
                  +v ++G G +G  A++ a+  ga+V +l  +p+ l+  ++lga+ + + ++++++l++  ke d+
   CCG92129.1 174 RVAIFGIGGVGHMAVQFARLAGATVIALSRNPRHLQIAKELGAHDC-IDANDSQHLEKLNKEGDI 237
                  89*****************************************933.344555666666666665 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.3   1.4e-06    0.0023       4      91 ..     173     265 ..     172     269 .. 0.81
   2 ?   -0.7   0.0       1.4   2.4e+03      67      90 ..     283     308 ..     268     312 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.4e-06
                  EEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TT..TTTCEET.....TEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEEE CS
  CoA_binding   4 tkviviGagglgiaglyhfkeklkygikavfgvnpr..kvgtevl.....glpvyksvdeleektevdvavitvPaesaqeavdelveagikgiv 91 
                  ++v++ G+gg     + +++ +l   ++++   npr  ++++e +     +    +++++l ++ ++d av+++P++++++ ++ lv+ g k ++
   CCG92129.1 173 KRVAIFGIGGV--GHMAVQFARLAGATVIALSRNPRhlQIAKELGahdciDANDSQHLEKLNKEGDIDCAVVFAPSNAIAQQAISLVKPGGKIVL 265
                  589*******9..446677778888999********444557777666554444568888888867************************99876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.4
                  EEES..-HHHHHHHHHHHHHTT-SEE CS
  CoA_binding  67 vitv..Paesaqeavdelveagikgi 90 
                  + tv  P e+ +e+   ++e +ik i
   CCG92129.1 283 LGTVigPREEMKEVLRLAAEGKIKAI 308
                  44556699999999999999999988 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.3e-06    0.0037      34      80 ..     170     216 ..     162     264 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.3e-06
                   GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC CS
  2-Hacid_dh_C  34 lsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv 80 
                   l gk+v+i+G+G +G+ + + ++  g+ via +r++++ + ++elg+
    CCG92129.1 170 LLGKRVAIFGIGGVGHMAVQFARLAGATVIALSRNPRHLQIAKELGA 216
                   669********************************998776666655 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   4.3e-06     0.007       2      86 ..     174     260 ..     173     265 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.3e-06
                   EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE.EESS......HHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve.aysd......leelladpeidavivatpngtheelakaaleag 86 
                   rvai+G+G +g + ++ + +   ++ v+ +l ++++r+ ++a+++g++ +  d      le+l ++ +id+++v  p++  ++ a+ +++ g
    CCG92129.1 174 RVAIFGIGGVGHMAVQ-FARL-AGATVI-AL-SRNPRHLQIAKELGAHdC-IDandsqhLEKLNKEGDIDCAVVFAPSNAIAQQAISLVKPG 260
                   89********999983.3333.344444.34.4556888899******63.4447788677777777***********88888888777765 PP

>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.8e-06    0.0045     270     364 ..     170     257 ..     158     274 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.8e-06
                     HTT-EEEEECSSHHHHHHHHHHHHHT-EEEEEEESSS-HHHHHHHHHHS.TT.SEEEES.CHHHHHHHHHHHT-SEEEE-CCHHHHHHHTT--EE CS
  Oxidored_nitro 270 lagkrvaiygdpdrvvalarllkelGmevvaagtetahrddeerlkaeleegepeviddadleeleelikelkpdlllggskeryiaeklgiplv 364
                     l gkrvai+g +   +  +++ +  G++v+a++   +h +  ++l a       + id +d ++le+l ke   d  +     ++ia++  i lv
      CCG92129.1 170 LLGKRVAIFGIGGVGHMAVQFARLAGATVIALSRNPRHLQIAKELGA------HDCIDANDSQHLEKLNKEGDIDCAVVFAPSNAIAQQA-ISLV 257
                     669***************************99988888777765555......479******************9988888888888877.6665 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   2.3e-05     0.037      27      62 ..     168     202 ..     158     235 .. 0.86
   2 ?   -1.6   0.0       1.1   1.8e+03     112     142 ..     234     264 ..     208     268 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
                    TS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEE CS
  ELFV_dehydrog  27 ldslegkrvaisGsGnvgsyaallltelgakvvavs 62 
                    +  l gkrvai G G vg++a++++  +ga+v+a+s
     CCG92129.1 168 G-PLLGKRVAIFGIGGVGHMAVQFARLAGATVIALS 202
                    3.4889****************************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
                    S.S-SEEEE-SSTTSB-HHHHTHTHHTT-SEE CS
  ELFV_dehydrog 112 l.kvdilvPcAtqneideenakalikngvklv 142
                      ++d++v  A  n+i ++ ++ l+k g k+v
     CCG92129.1 234 EgDIDCAVVFAPSNAIAQQAIS-LVKPGGKIV 264
                    2488889988999999998888.888887776 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   5.3e-05     0.087       1      42 [.     175     217 ..     175     279 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.3e-05
                 EEEES-SHHHHHHHHHHHH.HTHCEEEE-SCH.HHHHHHHHCEE CS
        ApbA   1 iailGaGaiGsllaakLak.agadvtlilrsr.rlealkknGlr 42 
                 +ai G+G++G + a++ a+ aga+v+ + r++ +l+  k+ G +
  CCG92129.1 175 VAIFGIGGVGHM-AVQFARlAGATVIALSRNPrHLQIAKELGAH 217
                 69********86.7888888************999988888874 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.8e-05     0.078     126     243 ..     175     294 ..     159     305 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.8e-05
                   EEEE..TSCCCHHHHHHHHHHHHHH.HHH-T.TCEECCEEESTTTCHHHHHHHHHHHHH.TTT..ECEEEESSCCHHHCHHHHHHHTTTTSTEEEEE CS
  Peripla_BP_4 126 vvil..aGspgdpnaeeriegfrkv.lkeyp.gikivaevaganwdaekaqqaleallt.anp..ldgilaandgmaegalealeaaglagkvvvtg 215
                   v+i+   G+   + + +r++g++ + l   p  ++i +e  + +   ++  q le+l +   +  + +++a+++++a++a++ ++     gk+ v g
    CCG92129.1 175 VAIFgiGGVGHMAVQFARLAGATVIaLSRNPrHLQIAKELGAHDCIDANDSQHLEKLNKeG-DidCAVVFAPSNAIAQQAISLVKP---GGKI-VLG 266
                   4444424444455556888888887666688899999865555555555566677777743.4559************99999999...4455.*** PP

                   ES-HHHHHHHHHTTSSEEEEE--HHHHH CS
  Peripla_BP_4 216 qDatpealeaikdGtidatvaqdpyelg 243
                   + a+  a  ++++  i +tv  +  e+ 
    CCG92129.1 267 VNAELGAFSFVEEKVILGTVIGPREEMK 294
                   ********************98887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2162.54
//
Query:       CCG92130.1  [L=96]
Description: hypothetical protein MFUM_320001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 660.17
//
Query:       CCG92131.1  [L=126]
Description: hypothetical protein MFUM_330001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 924.10
//
Query:       CCG92132.1  [L=163]
Description: RNA-directed DNA polymerase (Reverse transcriptase) (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-25   89.0   0.0      4e-25   88.7   0.0    1.0  1  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.0   2.2e-29     4e-25       4     156 ..       5     157 ..       3     160 .. 0.91

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 2.2e-29
                 TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.... CS
       RVT_1   4 kgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptkli 102
                 ++ g+ Rp++++++++++ + + +  L +++e  l+e+q+++r+grs ldav+++++    +k+++ +++ Dl + Fds+p++ ll+ l++   + +++
  CCG92132.1   5 PD-GKQRPLGVPTIRDRVAQMAAVLVLAPIFEVDLPEEQYAYREGRSALDAVKQVHAL--LRKGYTEVIDADLCGYFDSIPHDPLLKSLARRISDGTML 100
                 56.99***********************************************999999..99************************************* PP

                 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T. CS
       RVT_1 103 nliksflstrsfsvrvnge...eskgryekkglpqGsvlSPllfnlfmnellrelrk 156
                  l+k++l+ +      +g+   +++ + + +g+pqG++lSPll+nl+m +++ ++++
  CCG92132.1 101 ALLKAWLEMAVEEEDEDGRkqrRTQAKDSGRGTPQGAPLSPLLANLYMRRFILDWKR 157
                 *******877766666444213556666779*******************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1101.16
//
Query:       CCG92133.1  [L=50]
Description: hypothetical protein MFUM_360001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 386.49
//
Query:       CCG92134.1  [L=80]
Description: hypothetical protein MFUM_360002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 569.51
//
Query:       CCG92135.1  [L=38]
Description: hypothetical protein MFUM_360003 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 295.15
//
Query:       CCG92136.1  [L=45]
Description: hypothetical protein MFUM_360004 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       133  (0.00741815); expected 358.6 (0.02)
Passed bias filter:                      126  (0.00702772); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 395.63
//
Query:       CCG92137.1  [L=59]
Description: hypothetical protein MFUM_360005 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 453.97
//
Query:       CCG92138.1  [L=59]
Description: hypothetical protein MFUM_360006 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       139  (0.0077528); expected 358.6 (0.02)
Passed bias filter:                      129  (0.00719505); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 454.29
//
Query:       CCG92139.1  [L=422]
Description: hypothetical protein MFUM_370001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-08   33.4   1.3    1.2e-06   28.2   0.1    2.9  3  Glycos_transf_1  Glycosyl transferases group 1
    1.6e-06   28.5   0.0    4.9e-06   27.0   0.0    1.8  2  Glyco_trans_1_4  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.1    0.0089        80      53      82 ..      62      90 ..      44     101 .. 0.82
   2 ?   -1.3   0.0      0.16   1.4e+03      30      54 ..     238     261 ..     234     270 .. 0.74
   3 !   28.2   0.1   1.4e-10   1.2e-06      11     140 ..     272     394 ..     262     411 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0089
                     ES.STTHHHHHHHHHHHCTTCGGGEEECCH CS
  Glycos_transf_1 53 aGngeeekelkklaeelelsdnviflgevs 82
                      G g  + + ++++++le ++++ifl++ +
       CCG92139.1 62 LG-GGANFYRQQWIQQLEKENQLIFLFYYN 90
                     55.566678899*************99876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.16
                      HHHHHHHHHCCCCCHCSCEEEEEES CS
  Glycos_transf_1  30 vdllikafallkkqlnpnvklviaG 54 
                      ++ll+ka+++l+k  +  +k + +G
       CCG92139.1 238 LSLLLKAYPTLEKS-QIVLKPHAIG 261
                      689********875.6666666555 PP

  == domain 3  score: 28.2 bits;  conditional E-value: 1.4e-10
                      TTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHC..ESEEEEEESS CS
  Glycos_transf_1  11 knekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellkn..adifvlpsis 102
                       ++++ i+  vg ++++   ++li+ + +  + ++ ++klv++G           +   el+++++++g   +e+l +l+++   ++ +lpsi+
       CCG92139.1 272 QPNEEVIVGIVGHIDTKAKGKVLIREMTQAIQLEKWPIKLVVIG----------TVGDQELEKKLHVYGPYRKEELVSLIESsmVNLCFLPSIW 355
                      56789999*********88899999998887779**********..........55667899999****9999********988899******* PP

                      .BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE CS
  Glycos_transf_1 103 .EgfGivllEAmaaglpviasnaggpaevvkdgetGllv 140
                       E f  v  E ma+g p  + + g  ae v+ ++ G ++
       CCG92139.1 356 pETFSYVTEELMAIGAPLAVFDLGAQAEKVRRYKLGHVI 394
                      *******************************99988776 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.19   1.7e+03      16      50 ..     237     272 ..     233     290 .. 0.67
   2 !   27.0   0.0   5.5e-10   4.9e-06       3     110 ..     278     388 ..     276     416 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.19
                      THHHHHHHHHHHH.HH..EEEEEES---..HHHHHHH CS
  Glyco_trans_1_4  16 gvdllleavpllrkkd..vrlvivGdgprpeeleela 50 
                       + lll+a p l k++  ++ + +G+  r+++l++  
       CCG92139.1 237 SLSLLLKAYPTLEKSQivLKPHAIGSF-RKAKLRAPQ 272
                      578999999*99988666899999954.666786433 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 5.5e-10
                      EEEEES---GG.GTHHHHHHHH.HHHH.HH..EEEEEES---..HHHHHHHTT-T.TEEEE---..THHHHHHHH-..SEEEE--...---SHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleav.pllrkkd..vrlvivGdgprpeeleelaagleerveftGfv..edlaellaaa..dvfvaPs...egfglk 86 
                      +++ vG ++ +    ++l++++ ++++ ++  ++lv++G    ++ele       ++ ++ G    e+l +l++++  +++ +Ps   e+f+++
       CCG92139.1 278 IVGIVGHIDTK-AKGKVLIREMtQAIQLEKwpIKLVVIGTV-GDQELE-------KKLHVYGPYrkEELVSLIESSmvNLCFLPSiwpETFSYV 362
                      57788999445.55589999998999955445*******54.445787.......5678888776788****9998335566788********* PP

                      HHHHHHTT-EEEE-TGGGTTT--..T CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvggiaevv..g 110
                      + E ma g p  ++d+g+ ae v   
       CCG92139.1 363 TEELMAIGAPLAVFDLGAQAEKVrrY 388
                      ****************8878866432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3075.91
//
Query:       CCG92140.1  [L=66]
Description: hypothetical protein MFUM_370002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      120  (0.00669307); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 533.97
//
Query:       CCG92141.1  [L=89]
Description: hypothetical protein MFUM_370003 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 617.56
//
Query:       CCG92142.1  [L=47]
Description: hypothetical protein MFUM_370004 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.07   13.1   0.0      0.074   13.1   0.0    1.1  1  DUF2375   Protein of unknown function (DUF2375)


Domain annotation for each model (and alignments):
>> DUF2375  Protein of unknown function (DUF2375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.1e-06     0.074      30      58 ..      12      40 ..       5      44 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.1e-06
     DUF2375 30 vsesGrviiPqeFkrGKsiiaVlEGeiki 58
                + + G+ i P + k GK i++ l  ++ki
  CCG92142.1 12 KRNGGQYIAPMSLKSGKKIVVALSANLKI 40
                5567999**************99998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 327.81
//
Query:       CCG92143.1  [L=52]
Description: hypothetical protein MFUM_370005 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       134  (0.00747392); expected 358.6 (0.02)
Passed bias filter:                      109  (0.00607954); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 432.34
//
Query:       CCG92144.1  [L=43]
Description: hypothetical protein MFUM_370006 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       137  (0.00764125); expected 358.6 (0.02)
Passed bias filter:                      122  (0.00680462); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.46
# Mc/sec: 280.48
//
Query:       CCG92145.1  [L=839]
Description: hypothetical protein MFUM_370007 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-24   84.9   0.0    1.3e-19   70.6   0.0    2.8  2  Glycos_transf_2  Glycosyl transferase family 2
    3.9e-13   49.8   0.0    8.4e-12   45.5   0.0    2.2  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    5.8e-08   32.6   0.0    1.5e-07   31.2   0.0    1.7  2  Glyco_tranf_2_2  Glycosyltransferase like family 2
    2.6e-06   27.5   0.0    4.6e-06   26.7   0.0    1.3  1  Glyco_trans_2_3  Glycosyl transferase family group 2
     0.0054   16.4   0.2      0.039   13.6   0.0    2.3  2  Glyco_transf_7C  N-terminal domain of galactosyltransferase
     0.0079   15.9   0.2      0.068   12.9   0.3    2.4  2  Glyco_tranf_2_5  Glycosyltransferase like family


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   7.5e-05      0.22       6      88 ..     308     392 ..     304     404 .. 0.77
   2 !   70.6   0.0   4.4e-23   1.3e-19       1     169 [.     558     735 ..     558     736 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.5e-05
                      ESS-...TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCH....C-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEES CS
  Glycos_transf_2   6 tyNe...ektlletlesllaqdpypdfeiivvDDgStDetveileelak....edprvrvirreenvGkagalnaglraatgdyilflDa 88 
                      +y     e+ + ++l s+ +q  y+++e+++   g   + v  ++++       +++++++ ++    ka aln+ l  ++gdy++++D 
       CCG92145.1 308 FYDQrwkEEDIYRVLSSCFSQ-FYSHWELWLCPYGA--GPVFSVQSFGYrwpgAKQKIHFLEKTA--TKAEALNCVLTLVQGDYVVLIDP 392
                      555556688899999999999.99999999999999..777777777556655666677666664..6*********************6 PP

  == domain 2  score: 70.6 bits;  conditional E-value: 4.4e-23
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES..-.SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDg..S.tDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDde 91 
                      s++ipt    ++++ ++es+l+  +y +fei++v +g  S   e +++l e+++  +++r++  +e + +a+  n+++++++g++++fl++D+e
       CCG92145.1 558 SIIIPTRLPLPYVKTCIESILSKSTYRKFEILLVINGygSlDQEQKAFLSEYCS-LKPLRLLWYDEPFNYAAINNWAAKEVNGELLAFLNDDVE 650
                      8***********************************976788899999999996.99999999999999***********************97 PP

                      .E-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS......EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHC CS
  Glycos_transf_2  92 .pdpdwleklvealekdgadvvlgqrprifgetdeiernkrv......generlyfkerkrslkgnlsfeigsaallrrealeel 169
                       ++pdw+e++++++ + ++++v ++ ++ +         +        g    l ++ +  +l +nl+++i  +al+rre++e++
       CCG92145.1 651 vISPDWIEEMAGHALRKEVGIVGAKLYYPNLTIQSDGMILWKdyrrfhGMSRELAGYLGLAKLCQNLTGVITACALMRRELFEQV 735
                      25999******************99999999999998887769999999999******************************975 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.058   1.7e+02      73     105 ..     369     401 ..     356     408 .. 0.87
   2 !   45.5   0.0   2.8e-15   8.4e-12       4     211 ..     557     772 ..     555     804 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.058
  Glyco_tranf_2_3  73 tgksralnealravksdlvllvDdDtvvePdtl 105
                       +k++aln +l  v++d+v+l+D  +++++++l
       CCG92145.1 369 ATKAEALNCVLTLVQGDYVVLIDPSVLISKEAL 401
                      479999*****************9999988875 PP

  == domain 2  score: 45.5 bits;  conditional E-value: 2.8e-15
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesllaqe.yprvevvvvvdesd...aetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvll 93 
                      +++++pt    +++  ++es+l+ + y  +e+ +v +++    +e+ +++ e    ++   +r++   +++  +++++  n a + v+++l+++
       CCG92145.1 557 VSIIIPTRLPLPYVKTCIESILSKStYRKFEILLVINGYGsldQEQKAFLSE---YCSLKPLRLLWY-DEPFNYAAIN--NWAAKEVNGELLAF 644
                      89********************7654999*******6643333999999998...699889998855.5587788888..999*********** PP

  Glyco_tranf_2_3  94 vDdDtvv.ePdtlkrllqffltpkvgavgtpvfllnrs....tlvsalgalefaerhlrflaar.........ralgvltlnGsgslirrevlk 173
                      ++dD+ v +Pd ++ ++  +l+++vg+vg++ +  n +      +  + +  + + h + + ++         +  + + + +++ l+rre+++
       CCG92145.1 645 LNDDVEViSPDWIEEMAGHALRKEVGIVGAKLYYPNLTiqsdG-MILWKD--YRRFHGMSRELAgylglaklcQ--NLTGVITACALMRRELFE 733
                      *****999**********99***********998765433323.334544..2233333333333455443221..345555699********* PP

  Glyco_tranf_2_3 174 elegldp.lflltdDyelglrlrragfrtayvpgaavre 211
                      +  g+d+   + + D++l+lrl+++g+ t++ p a+  +
       CCG92145.1 734 QVHGFDEeFAYNWNDLDLCLRLKERGYWTVWTPFAELIH 772
                      *******666778******************99887433 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       2.9   8.6e+03      65      97 ..     367     399 ..     364     401 .. 0.79
   2 !   31.2   0.0   4.9e-11   1.5e-07      13     202 ..     568     758 ..     558     773 .. 0.75

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 2.9
  Glyco_tranf_2_2  65 kayslaaarNrGaskaesdlvlFlDaDcfissD 97 
                      k+ ++a a N      ++d+v+ +D   +is +
       CCG92145.1 367 KTATKAEALNCVLTLVQGDYVVLIDPSVLISKE 399
                      556677888888888999999999999988875 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 4.9e-11
  Glyco_tranf_2_2  13 hyieerv...lqkakyydeeie.livvddgSs.....ekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaD.cfiss 96 
                      +y++  +   l k +y   ++e l+v++++ s     + fl+e  s++ l+ll y  de    +  aa  N  a++ +++l+ Fl+ D   is+
       CCG92145.1 568 PYVKTCIesiLSKSTY--RKFEiLLVINGYGSldqeqKAFLSEYCSLKPLRLLWY--DE---PFNYAAINNWAAKEVNGELLAFLNDDvEVISP 654
                      4555444332788777..6666256889886533222457777778888888888..44...7**********************9884589** PP

  Glyco_tranf_2_2  97 Dkfekilklitikklrenidaavvlpvvdlnkedsevlkdvedltassrvledllaakstlvkffapss.ssilinrraflevGGyDErfrGhg 189
                      D +e ++  +  +k   ++ a + +p   +  +     kd+      sr l   l   + l + +       +l++r+ f +v G+DE+f    
       CCG92145.1 655 DWIEEMAGHAL-RKEVGIVGAKLYYPNLTIQSDGMILWKDYRRFHGMSRELAGYLG-LAKLCQNLTGVItACALMRRELFEQVHGFDEEF-AYN 745
                      ********544.44457999******999888888888888888888887766666.4455556655544999*****************.899 PP

  Glyco_tranf_2_2 190 aEDfdlllRlaka 202
                       +D dl lRl  +
       CCG92145.1 746 WNDLDLCLRLKER 758
                      9********9865 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.5e-09   4.6e-06      10     137 ..     651     789 ..     642     792 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.5e-09
  Glyco_trans_2_3  10 vlppdclreiaaelaspevaivqgpvlvm....nvanwleelaalf....faedhgkdilvrealgrvvpsvGsgaflrrsalqevggwdgdes 95 
                      v++pd ++e a +  + ev+iv  + ++     + ++ +  +++++    +++  +     ++ + + + + +++a+ rr+++++v+g+d  + 
       CCG92145.1 651 VISPDWIEEMAGHALRKEVGIVGAKLYYPnltiQ-SDGMILWKDYRrfhgMSRELAGYLGLAKLCQNLTGVITACALMRRELFEQVHGFDEEFA 743
                      5899999999999999999999999888645543.4455567776633333445555555555666666688******************8888 PP

  Glyco_trans_2_3  96 svsEDfdmglrlqrkGyrvrfvpes....lvkekspltlraalrQr 137
                          D+d++lrl ++Gy++++ p +     +  ++  +  +  +Q+
       CCG92145.1 744 YNWNDLDLCLRLKERGYWTVWTPFAelihYCSVSVGQESIDKQQQW 789
                      999********************99865545455544444455555 PP

>> Glyco_transf_7C  N-terminal domain of galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.51   1.5e+03      29      44 ..     692     707 ..     685     707 .. 0.84
   2 !   13.6   0.0   1.3e-05     0.039      23      60 ..     724     760 ..     715     775 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.51
  Glyco_transf_7C  29 edfekiNGfsntfwgW 44 
                      +d+++ +G+s ++ g+
       CCG92145.1 692 KDYRRFHGMSRELAGY 707
                      79********988775 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.3e-05
  Glyco_transf_7C  23 vlalrkedfekiNGfsntfwgWGgEDdelyaRlakkgl 60 
                        ++r+e fe+++Gf+++f  + + D +l+ Rl++ g+
       CCG92145.1 724 CALMRRELFEQVHGFDEEFA-YNWNDLDLCLRLKERGY 760
                      5689************9984.7779********99886 PP

>> Glyco_tranf_2_5  Glycosyltransferase like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.1   6.2e+03      39      69 ..     369     399 ..     355     418 .. 0.63
   2 !   12.9   0.3   2.3e-05     0.068      41      90 ..     626     674 ..     620     799 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.1
  Glyco_tranf_2_5  39 ksiaeaynkalsasdakykvYlhqDvliink 69 
                         aea n  l+  +  y+v ++  vli ++
       CCG92145.1 369 ATKAEALNCVLTLVQGDYVVLIDPSVLISKE 399
                      4445666666666666666666666665554 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.3e-05
  Glyco_tranf_2_5  41 iaeaynkalsasdakykvYlhqDvliinkdfikdlleiFkkdkkiGmiGv 90 
                      +a+  n a+++ + + + +l++Dv +i++d+i+++  +    k++G++G 
       CCG92145.1 626 YAAINNWAAKEVNGELLAFLNDDVEVISPDWIEEMAGHA-LRKEVGIVGA 674
                      66777899999************************9998.8999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 6201.30
//
Query:       CCG92146.1  [L=490]
Description: Predicted O-methyltransferase (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-08   35.9   0.0    2.1e-08   35.1   0.0    1.4  1  Methyltransf_24  Methyltransferase domain
  ------ inclusion threshold ------
       0.18   11.7   0.0       0.45   10.4   0.0    1.6  1  NACHT            NACHT domain


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   2.4e-12   2.1e-08       1     106 []     315     415 ..     315     415 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.4e-12
  Methyltransf_24   1 vEiGvysGvstlwllralrrnga.grlvavdhdpgaeeaaalareaglddrvrlikadseealaslaagsiDllfiDgghaa...eavledlea 90 
                      +EiG  sG++t w   a  r+   ++lv++d++p   +++  ++++  +++ r +++   + +++l+    D+lfiDg h     +++  ++  
       CCG92146.1 315 LEIG--SGFTTRWAYGAKARYSPlTKLVSIDPHP---RVK--VDTLCHQAFRRPLHEVPLDIFEQLE--AGDILFIDGTHRIlqgSEATIFFLE 399
                      7***..********9998888889**********...655..6788889999999999999999999..56*********96665777777999 PP

  Methyltransf_24  91 llprlapggvvlfdDi 106
                      +lp+l+ g +++++Di
       CCG92146.1 400 ILPILKAGVIIHLHDI 415
                      ***************7 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0     5e-05      0.45      19      85 ..     152     217 ..     149     222 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5e-05
                 HHHHHHCTS-SCCCC-SEEEEEETTTTTTS-....-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEEE CS
       NACHT  19 klalawaegklpqgafklvFflslrelsrsgna.rsladllfsqlpepaapvsevwavllelperlLl 85 
                  ++  w+eg+ p+ +f+  F+l++ ++  + ++ +   +llf ql   ++ ++e  + ++  ++r+Ll
  CCG92146.1 152 FICYGWKEGRKPHPRFDPAFYLNQYKDVAEAAInPLSHYLLFGQLEGRISSPEE--EPVIDSQQRILL 217
                 5899*************************99988778899*********99999..889999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 3087.04
//
Query:       CCG92147.1  [L=398]
Description: Predicted O-methyltransferase (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-07   32.6   0.0    3.4e-07   31.2   0.0    1.8  1  Methyltransf_24  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.9e-11   3.4e-07       1     106 []     222     322 ..     222     322 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.9e-11
  Methyltransf_24   1 vEiGvysGvstlwllralrrnga.grlvavdhdpgaeeaaalareaglddrvrlikadseealaslaagsiDllfiDggha...aeavledlea 90 
                      +EiG  sG st +   a +r  + +++v++d+ p  +e    +++  +d++  l  +++  ++ +   +  D+lf+Dg+h    a++v  ++  
       CCG92147.1 222 LEIG--SGHSTRFAYLAKKRCSQsTKIVSIDPAP-RSE----IDQ-LCDEVYPLPLQQMGLLMFEQL-EAGDILFFDGSHRllqASDVTVFFLE 306
                      7***..*******999999988789*********.333....343.455566666666655444444.478*********955469******** PP

  Methyltransf_24  91 llprlapggvvlfdDi 106
                      +lp+++pg +++++Di
       CCG92147.1 307 VLPIIKPGVIIHLHDI 322
                      ***************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2842.32
//
Query:       CCG92148.1  [L=230]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.033   13.9   0.5      0.033   13.9   0.5    2.0  2  Doppel    Prion-like protein Doppel


Domain annotation for each model (and alignments):
>> Doppel  Prion-like protein Doppel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.5   1.8e-06     0.033      10      19 ..      16      25 ..       9      37 .. 0.83
   2 ?   -3.1   0.7      0.36   6.4e+03       7      14 ..     192     199 ..     188     200 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-06
                HHHHHHHHHH CS
      Doppel 10 lAivCvLLfS 19
                lAi+CvLLfS
  CCG92148.1 16 LAILCVLLFS 25
                9********9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.36
                 SCCHHHHH CS
      Doppel   7 tWwlAivC 14 
                 tW++ i++
  CCG92148.1 192 TWAMGILF 199
                 68888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1618.35
//
Query:       CCG92149.1  [L=522]
Description: Glucose-6-phosphate 1-dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-112  375.3   0.0   2.1e-112  375.0   0.0    1.1  1  G6PD_C    Glucose-6-phosphate dehydrogenase, C-terminal domai
    1.5e-59  201.6   0.0    2.4e-59  200.9   0.0    1.3  1  G6PD_N    Glucose-6-phosphate dehydrogenase, NAD binding doma
  ------ inclusion threshold ------
       0.13   11.9   0.0       0.21   11.2   0.0    1.2  1  Srg       Srg family chemoreceptor


Domain annotation for each model (and alignments):
>> G6PD_C  Glucose-6-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.0   0.0  3.6e-116  2.1e-112       2     289 ..     212     507 ..     211     508 .. 0.97

  Alignments for each domain:
  == domain 1  score: 375.0 bits;  conditional E-value: 3.6e-116
                 HHHHS-STTSTTSSTTTEEEEEEEEEESS--TTTHHHHTTTHHHHHTTTTHHHHHHHHHH----SSSSHHHHHHHHHHHHTTB----G...GG.EEEEE CS
      G6PD_C   2 vlRfaNalfeplwnrnyidhvqitvketlgvegrggYydeaGalrDvvqnHllqllalvamepPasldaedirdekvkvLkslrplkleevekkvvrGq 100
                  +Rf+N++feplw+r+yidhvqitv+et  +++rg+Yyd +Ga rD++qnHl+ql++l+amepPasl+ae+irdekvkvLks+   ++ee+ ++ vr+q
  CCG92149.1 212 YFRFGNSIFEPLWDRKYIDHVQITVAETQTIGSRGEYYDATGASRDMLQNHLMQLFSLIAMEPPASLEAESIRDEKVKVLKSVPIPSSEEWLHNSVRAQ 310
                 79************************************************************************************************* PP

                 E.....E--TGS-STTSTTS-TT----SEEEEEEEB-STTTTT-EEEEEEESSBSS-EEEEEEEE---SS-SS.---.....--EEEEEEESS-EEEEE CS
      G6PD_C 101 YaagavkgkevkgYreeegvakdSkteTfvalkleidnerwagVPfylrtGKrLnekkteiriqfkkvpsdlf.kkke....rneLviriqpdeaislk 194
                 Y  g + gk+ k+Yree++v+k+S teT+v++kleidn+rw+gVPfylrtGK+L+++ +ei i+f ++p+ lf ++ +    rn+L iriqp+e+i+l 
  CCG92149.1 311 YGPGILGGKTIKAYREEDKVSKNSLTETYVCVKLEIDNWRWSGVPFYLRTGKALAKQFSEICIVFNRPPCVLFaNS-TkkvaRNWLKIRIQPNEGIHLL 408
                 *************************************************************************633.24699***************** PP

                 EEEE-SSSE.....EEEEEEHHHHTT..---HHHHHHHHHHHT-GTTSB-HHHHHHHHHHHHHHHHHHHH...---EEEETTSSS-HHHHHHHHHHTX. CS
      G6PD_C 195 lnakkpgleleleeveldlsykerfk..lpeaYerLlldvlkgdqtlFvrsdeveaaWkivdpileawee...eklekYeagsrgPeeadellekdgrk 288
                 +n+k+p+l  +l+e+++d+ y++  +   peaYerLlld+l+g++tlF+rsdeve aW+++d + +aw+e   ++++ Y+ gs+gP eadell++dgr 
  CCG92149.1 409 FNTKVPNLP-ALQEAKMDFYYRRYGDhyFPEAYERLLLDALNGESTLFTRSDEVEYAWRVIDALRNAWSEeevDSIPLYAPGSMGPVEADELLRRDGRY 506
                 ********7.89*********98777899***************************************9899988***********************9 PP

                 X CS
      G6PD_C 289 w 289
                 w
  CCG92149.1 507 W 507
                 9 PP

>> G6PD_N  Glucose-6-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.9   0.0     4e-63   2.4e-59       1     177 []      24     209 ..      24     209 .. 0.97

  Alignments for each domain:
  == domain 1  score: 200.9 bits;  conditional E-value: 4e-63
      G6PD_N   1 vifGasGdLakrkllPaLyelaregllpeevrivgvarsklsdeefrekvkealkkekekeeldeekleeflkrleyvsgdleeeeeyekLkekleele 99 
                 vifGa+GdL++rk++Pa+y+l ++g+lp+++ ivg+ar+++ ++efr+ +k++l++ ++++ +d e ++ + +r+ y++gdl+++e+y kL++ l++l 
  CCG92149.1  24 VIFGATGDLTQRKIIPAFYHLRKHGRLPDHFVIVGFARRPYGEKEFRALLKQSLEDYSHTHPIDPEIWQWLEERIFYLQGDLANSEDYVKLAHLLNSLP 122
                 8*****************************************************99888889*********************************9977 PP

      G6PD_N 100 ......anrlfYlavppslfeevaeklkkaglake...eewkrvvvEKPfGkdlesarelneelkkvfkeeqiyrIDhYLGketvqN 177
                       +n+lfYla++p++f  v+e+l+kagl+ +   ++++r++vEKPfG dl+sareln+ l+k+f e++i+rIDhYLGketvqN
  CCG92149.1 123 eskyykDNHLFYLATAPKYFPIVSENLAKAGLNPQpgiSGQRRLIVEKPFGIDLKSARELNSILQKYFPEKSIFRIDHYLGKETVQN 209
                 6666666**************************99999999*********************************************9 PP

>> Srg  Srg family chemoreceptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.5e-05      0.21      92     126 ..     363     397 ..     340     416 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.5e-05
         Srg  92 rhakflsqillslnRmssVlfpvkyekiWskylkl 126
                  +ak +s i++++nR  +Vlf  + +k+ +++lk+
  CCG92149.1 363 ALAKQFSEICIVFNRPPCVLFANSTKKVARNWLKI 397
                 67999***********************9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3402.47
//
Query:       CCG92150.1  [L=225]
Description: 6-phosphogluconolactonase/Glucosamine-6-phosphateisomerase/deaminase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-58  196.7   0.0    5.8e-58  196.4   0.0    1.0  1  Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phospho


Domain annotation for each model (and alignments):
>> Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.4   0.0   3.2e-62   5.8e-58      14     225 .]      23     222 ..      13     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 196.4 bits;  conditional E-value: 3.2e-62
                      HHHHHHHHHHHHS-EEEEE--SHCHHHHHHHHHCSG.GGGGS-GGGEEEEESEEESS-TTSTT-HHHHHHHHTGGGS---GGGEE-S-TTSSTH CS
  Glucosamine_iso  14 ivealeealaergraslalsGGstpkalyealaeeeeaaaaldwskvhvflgDERfVpaddpdsNaklareallskvkipeanvhpikesaaea 107
                      + e +++ l+++  +++alsGGstp ++ye l +e+     l+w+k+ ++lgDER+Vp++dp+sN++++r++l      +e +++  +   +e+
       CCG92150.1  23 FKEIVKTSLSHKPICHVALSGGSTPVPFYERLCTEA-----LPWEKICFWLGDERWVPSEDPQSNEGMIRRTLGAT--NKEFQFYGWHL--SEE 107
                      56778888999999*******************644.....9*******************************995..55669999975..445 PP

                      HHHHHHHHHHHHHHHCCSSSSSESEEEE---TTS-BTTB-TTCHHHHCSSSSEEEESSBSTSSS-EEEE-HHHHTTCSEEEEEEESHHHHHHHH CS
  Glucosamine_iso 108 peaaaaayeeelkellakelpvfDlvlLGmGpDGHtaSLFPgspeleetdrlvvavedspkpppeRitlTlpvlnsarevlflvaGeeKaeale 201
                      p +aaa ye+ l e ++ + pvfDl+lLG+G+DGHtaSLFP+s++lee+++ ++a++ +p+  + R+t+T+p++n a++++flv+G++K++++e
       CCG92150.1 108 PSQAAALYEKMLLEKVG-NPPVFDLILLGIGEDGHTASLFPDSKALEEKEH-YTALSLQPSSGQIRLTFTFPLINMAHQIWFLVSGNKKQPIIE 199
                      9************9998.89*************************877755.6667779*********************************** PP

                      HHHTT..TTTSGGGGH-.-SSEEEE CS
  Glucosamine_iso 202 evlsgedpeelPaalve.gqgellw 225
                      +vls  +++e+Pa  v  ++++l+w
       CCG92150.1 200 KVLS--ASPEIPAGKVIaKNKKLIW 222
                      ***9..4689*****9659999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.53
# Mc/sec: 1280.77
//
Query:       CCG92151.1  [L=245]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-15   56.4   7.6    4.7e-08   33.4   1.8    3.0  3  TPR_19      Tetratricopeptide repeat
    2.4e-12   47.3  11.4    5.1e-07   30.2   0.6    3.5  4  TPR_16      Tetratricopeptide repeat
    1.9e-10   40.0  12.1     0.0011   18.9   0.2    4.6  4  TPR_2       Tetratricopeptide repeat
    7.6e-09   35.7   2.3    7.7e-06   26.1   0.0    2.6  2  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
    8.7e-08   32.0   0.5     0.0066   16.8   0.0    3.3  3  TPR_17      Tetratricopeptide repeat
    2.6e-07   30.3   4.8     0.0002   21.3   0.2    3.7  3  TPR_8       Tetratricopeptide repeat
      3e-07   30.0  15.6      0.075   12.9   1.3    4.6  4  TPR_1       Tetratricopeptide repeat
      7e-07   29.1   0.5    1.9e-06   27.7   0.6    1.6  1  TPR_21      Tetratricopeptide repeat-like domain
    4.2e-06   26.9   4.6    3.7e-05   23.9   0.2    3.2  3  TPR_12      Tetratricopeptide repeat
      4e-05   24.1   7.8      0.012   16.3   0.1    4.5  4  TPR_14      Tetratricopeptide repeat
    7.7e-05   22.3  10.7      0.076   12.7   1.2    4.3  4  TPR_11      TPR repeat
     0.0019   18.3   1.2       0.01   16.0   0.2    2.4  2  TPR_9       Tetratricopeptide repeat
     0.0053   17.1   0.2      0.011   16.1   0.2    1.6  1  TPR_20      Tetratricopeptide repeat
     0.0074   16.2   1.3        5.8    7.2   0.1    3.2  3  TPR_7       Tetratricopeptide repeat
       0.01   15.5   0.2        0.8    9.3   0.1    2.2  2  HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
  ------ inclusion threshold ------
      0.013   15.6   0.6       0.32   11.2   0.7    2.5  2  HemY_N      HemY protein N-terminus
      0.027   13.9   0.1      0.061   12.7   0.1    1.6  1  Coatomer_E  Coatomer epsilon subunit
       0.45   11.3   9.5        1.3    9.8   0.3    4.0  3  TPR_6       Tetratricopeptide repeat
        1.8    8.5   4.4        6.3    6.8   0.1    3.1  3  TPR_10      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   1.8     5e-11   4.7e-08       6      64 ..      71     130 ..      58     131 .. 0.94
   2 !   24.9   0.3   2.2e-08   2.1e-05       2      61 ..     135     194 ..     134     201 .. 0.89
   3 ?    0.8   0.0      0.76   7.2e+02      13      36 ..     186     206 ..     179     210 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 5e-11
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.aryasL 64 
                 +++eA+++ ++a++  p++++a  l A+++l++++++ Ae+ L ++ + +pd  ++y+ L
  CCG92151.1  71 KLEEAQKAISRAMELRPNDPRAIVLAARIYLKQKDYERAEKELYKVFKIQPDYgPAYQYL 130
                 6899************************************************88999866 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 2.2e-08
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddary 61 
                 +a +d+ eAl ++eqa  +dp n e++l  + + + lg+l  Ae+lL++l + d  ++ y
  CCG92151.1 135 FAKKDFKEALYRFEQAALHDPMNKEILLKRIYCEIGLGRLLGAENLLSELSAFDEASPGY 194
                 6789*********************************************99888776544 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.76
      TPR_19  13 lleqalqedpknaearllLAeall 36 
                 ++ +a   +p++  ar++L++++ 
  CCG92151.1 186 AFDEA---SPGYYFARAALCRVQK 206
                 44444...9999999999999986 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.7   2.4e-08   2.3e-05       4      59 ..      63     116 ..      60     123 .. 0.90
   2 !   30.2   0.6   5.4e-10   5.1e-07       3      61 ..      96     152 ..      94     159 .. 0.92
   3 !   12.3   0.2   0.00022      0.21       4      58 ..     131     182 ..     130     194 .. 0.86
   4 ?    2.2   0.5      0.31     3e+02      11      52 ..     172     210 ..     168     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.4e-08
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyra 59 
                 a+ a+++ + ++A++a  +a +++   P +++A  l ++++l+q+++++A+ +ly+ 
  CCG92151.1  63 ALVAFKRLKLEEAQKAISRAMELR---PNDPRAIVLAARIYLKQKDYERAEkELYKV 116
                 7889********************...88888*******************999986 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 5.4e-10
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraal 61 
                 +ar++l+++dy++A++ l  + k +   Pd   A+ +lg++++++++++eA+  + +aal
  CCG92151.1  96 AARIYLKQKDYERAEKELYKVFKIQ---PDYGPAYQYLGEVFFAKKDFKEALyRFEQAAL 152
                 79*************9999999999...************************99999998 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00022
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                 +  +++ +d+ +A+ ++e+a   d   P + e ll +  +   +grl +A+ l+ 
  CCG92151.1 131 GEVFFAKKDFKEALYRFEQAALHD---PMNKEILLKRIYCEIGLGRLLGAENLLS 182
                 77889999****************...***********************95544 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.31
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlae 52 
                 g+   A+++l ++ + d    + +  +++++ ++ +q+ +a+
  CCG92151.1 172 GRLLGAENLLSELSAFD---EASPGYYFARAALCRVQKKYAD 210
                 66677888887777777...555569************9997 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.2   0.00033      0.31       8      34 .]      63      89 ..      60      89 .. 0.92
   2 !   13.2   0.2   7.6e-05     0.072       6      33 ..      95     122 ..      90     123 .. 0.85
   3 !   18.9   0.2   1.2e-06    0.0011       3      32 ..     126     155 ..     124     157 .. 0.94
   4 ?    2.3   0.1      0.23   2.2e+02       3      18 ..     194     209 ..     192     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00033
       TPR_2  8 GlayyklgdyeeAleafekAleldPnn 34
                +l+++k+ ++eeA +a  +A el Pn+
  CCG92151.1 63 ALVAFKRLKLEEAQKAISRAMELRPND 89
                578899999****************97 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 7.6e-05
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPn 33 
                   +++y+k++dye+A++ + k+ ++ P+
  CCG92151.1  95 LAARIYLKQKDYERAEKELYKVFKIQPD 122
                 6799*************99888888887 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 1.2e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldP 32 
                 a+ +lG++ ++++d++eAl  fe+A  +dP
  CCG92151.1 126 AYQYLGEVFFAKKDFKEALYRFEQAALHDP 155
                 899************************999 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.23
       TPR_2   3 alynlGlayyklgdye 18 
                 ++++++ +++ +++y+
  CCG92151.1 194 YYFARAALCRVQKKYA 209
                 89*************7 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   8.1e-09   7.7e-06      26      79 ..      59     113 ..      25     116 .. 0.87
   2 !    9.1   0.2    0.0016       1.5      27      80 ..     128     182 ..     118     184 .. 0.71

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 8.1e-09
                 HHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  26 ayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79 
                 ay  Al+ +++ + ++A++ +++a +l+++++++ +l+A+ +lk+k ye A++ L
  CCG92151.1  59 AYQDALVAFKRLKLEEAQKAISRAmELRPNDPRAIVLAARIYLKQKDYERAEKEL 113
                 6666**********************************************99877 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0016
                 HHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  27 yllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                  +l+++++  +++k+A++ +++a   ++ ++++++    c + L+++  A+++L+
  CCG92151.1 128 QYLGEVFFAKKDFKEALYRFEQAaLHDPMNKEILLKRIYCEIGLGRLLGAENLLS 182
                 346********************44444444444444466677788777777776 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     7e-06    0.0066       4      34 .]      81     111 ..      78     111 .. 0.95
   2 !   11.8   0.0   0.00027      0.25       7      33 ..     118     144 ..     113     145 .. 0.90
   3 ?   -2.3   0.0       8.3   7.9e+03       2      14 ..     147     159 ..     147     175 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7e-06
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtArq 34 
                 +a+el Pn++ a  + A+++lk++d+++A++
  CCG92151.1  81 RAMELRPNDPRAIVLAARIYLKQKDYERAEK 111
                 89***************************86 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00027
      TPR_17   7 eldPnnadaynnLAelllknGdlmtAr 33 
                 ++ P++ +ay++L+e++  ++d+++A+
  CCG92151.1 118 KIQPDYGPAYQYLGEVFFAKKDFKEAL 144
                 789********************9997 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 8.3
      TPR_17   2 ylkaleldPnnad 14 
                 +++a+ +dP n +
  CCG92151.1 147 FEQAALHDPMNKE 159
                 6788888885544 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.012        12      16      34 .]      71      89 ..      63      89 .. 0.92
   2 !   21.3   0.2   2.1e-07    0.0002       2      34 .]      91     123 ..      90     123 .. 0.92
   3 ?    2.7   0.1      0.19   1.8e+02       3      20 ..     126     143 ..     124     151 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.012
                -HHHHHHHHHHHHHHHHH. CS
       TPR_8 16 dyeeAkeyyekaleldpdn 34
                ++eeA++++ +a el+p++
  CCG92151.1 71 KLEEAQKAISRAMELRPND 89
                68***************96 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 2.1e-07
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +a ++ ++iylk++dye A++ + k+ +++pd+
  CCG92151.1  91 RAIVLAARIYLKQKDYERAEKELYKVFKIQPDY 123
                 6778899************************85 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHTT-HHHH CS
       TPR_8   3 ayynlgsiylklgdyeeA 20 
                 ay+ lg + + ++d++eA
  CCG92151.1 126 AYQYLGEVFFAKKDFKEA 143
                 677788888888888888 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   0.00022      0.21       8      34 .]      63      89 ..      59      89 .. 0.91
   2 !   12.9   1.3   7.9e-05     0.075       9      34 .]      98     123 ..      96     123 .. 0.94
   3 !   12.7   0.2   9.3e-05     0.088       3      33 ..     126     156 ..     124     157 .. 0.91
   4 ?    0.6   0.2      0.61   5.8e+02       4      18 ..     195     209 ..     193     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00022
                HHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  8 GnayfklgkydeAleyyekALelnPnn 34
                +++ fk  k++eA ++ ++A el+Pn+
  CCG92151.1 63 ALVAFKRLKLEEAQKAISRAMELRPND 89
                788999*******************97 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 7.9e-05
                 HHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   9 nayfklgkydeAleyyekALelnPnn 34 
                  +y+k+++y+ A++   k+ +++P++
  CCG92151.1  98 RIYLKQKDYERAEKELYKVFKIQPDY 123
                 59**********************97 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 9.3e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                 a+  lG ++f +++++eAl  +e+A  ++P 
  CCG92151.1 126 AYQYLGEVFFAKKDFKEALYRFEQAALHDPM 156
                 8999***************999999988885 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.61
                 HHHHHHHHHHTT-HH CS
       TPR_1   4 lynlGnayfklgkyd 18 
                 ++ ++++++ ++ky 
  CCG92151.1 195 YFARAALCRVQKKYA 209
                 8899*********96 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.6     2e-09   1.9e-06      11     138 ..      25     149 ..      20     154 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 2e-09
      TPR_21  11 ilvgvvlalvglaGwqgwqdyqeeqaeeAsalYqqlqeaveakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakde 109
                 + ++++ +++ + G  gw++  e+q+e+    +q+ q+a+ a ++ k++ea +++  + +  +   +a  l+A+   +++d+++A+++L +v + ++d 
  CCG92151.1  25 VFWAATTIFIFWGGAWGWSEVLENQKEKDRVFFQAYQDALVAFKRLKLEEAQKAISRAMELRPNDPRAIVLAARIYLKQKDYERAEKELYKVFKIQPDY 123
                 7788999999999*********************************************************************************99998 PP

      TPR_21 110 elkalarlRLarvllaekkydeAlktLea 138
                      a   L +v +a+k+++eAl + e+
  CCG92151.1 124 ---GPAYQYLGEVFFAKKDFKEALYRFEQ 149
                 ...66889999999999999999988776 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.3   0.00026      0.24      10      74 ..      63     119 ..      59     122 .. 0.81
   2 !   23.9   0.2   3.9e-08   3.7e-05       7      71 ..      94     150 ..      89     151 .. 0.92
   3 ?    0.3   0.1      0.95   8.9e+02      12      38 ..     167     193 ..     159     218 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00026
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 a+v +++ +++eA++   +a+e++     p+     ++    +r+y+++++ye A++ l ++ +i
  CCG92151.1  63 ALVAFKRLKLEEAQKAISRAMELR-----PND---PRAIVLAARIYLKQKDYERAEKELYKVFKI 119
                 567777778899999999999999.....776...4578899999********999888777666 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 3.9e-08
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 +  a +++++++y+ A++ l k+  i+     pd+     +++ Lg++++a ++++eAl+++e+a
  CCG92151.1  94 VLAARIYLKQKDYERAEKELYKVFKIQ-----PDY---GPAYQYLGEVFFAKKDFKEALYRFEQA 150
                 45899**********************.....985...889***********************9 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.95
      TPR_12  12 vlrrlgrydeAlellekaleiarrllG 38 
                 ++  lgr+  A+ ll +  +  ++++G
  CCG92151.1 167 CEIGLGRLLGAENLLSELSAFDEASPG 193
                 566688888888888888777777744 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.6    0.0049       4.6      16      43 ..      71      98 ..      54      99 .. 0.83
   2 !   16.3   0.1   1.3e-05     0.012       1      43 [.      90     132 ..      90     133 .. 0.93
   3 !    7.5   0.1    0.0091       8.6       3      32 ..     126     155 ..     124     169 .. 0.86
   4 ?    3.4   0.1      0.18   1.7e+02       6      43 ..     163     200 ..     158     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0049
      TPR_14 16 dpdeAiallrralalaPddaeawlllaq 43
                +++eA ++  ra +l P+d++a  l a+
  CCG92151.1 71 KLEEAQKAISRAMELRPNDPRAIVLAAR 98
                4899******************999998 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.3e-05
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 p+a  ++a+++l + d+++A++ l ++ + +Pd   a+ +l++
  CCG92151.1  90 PRAIVLAARIYLKQKDYERAEKELYKVFKIQPDYGPAYQYLGE 132
                 5778899********************************9997 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0091
      TPR_14   3 allalaeallalGdpdeAiallrralalaP 32 
                 a++ l+e+++a  d++eA+  +++a  ++P
  CCG92151.1 126 AYQYLGEVFFAKKDFKEALYRFEQAALHDP 155
                 7899***************99999977777 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.18
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 ++   +  lG++ +A++ll ++ a + +++ ++++ a 
  CCG92151.1 163 KRIYCEIGLGRLLGAENLLSELSAFDEASPGYYFARAA 200
                 5555566789999***********99999999998886 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0081       7.7       9      30 ..      71      92 ..      59      93 .. 0.91
   2 !   12.7   1.2     8e-05     0.076       2      41 ..      98     137 ..      97     138 .. 0.95
   3 !   11.9   0.0   0.00014      0.13       1      33 [.     131     163 ..     131     164 .. 0.93
   4 ?    1.0   0.1      0.36   3.4e+02       8      36 ..     172     200 ..     165     201 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0081
      TPR_11  9 kyeeAieaYkkAlkldPdnaea 30
                k+eeA +a ++A +l+P++++a
  CCG92151.1 71 KLEEAQKAISRAMELRPNDPRA 92
                799999999***********87 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 8e-05
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 ++y +q +ye A +++ k  k+ Pd+  ay  LG++++++
  CCG92151.1  98 RIYLKQKDYERAEKELYKVFKIQPDYGPAYQYLGEVFFAK 137
                 79***********************************975 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00014
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayyn 33 
                 G +++++ +++eA+ ++++A   dP n e++++
  CCG92151.1 131 GEVFFAKKDFKEALYRFEQAALHDPMNKEILLK 163
                 889***********************9999876 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.36
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeayynLGl 36 
                 G++ +A + +++  ++d+ ++  y+++++
  CCG92151.1 172 GRLLGAENLLSELSAFDEASPGYYFARAA 200
                 6666677778888999********99985 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   1.1e-05      0.01      10      61 ..      71     122 ..      64     130 .. 0.87
   2 ?    0.5   0.0      0.75   7.1e+02      42      61 ..     137     156 ..     118     166 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-05
       TPR_9  10 dweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                 + e+a +++ r + l P+dp+ +   ++++ ++ +++ A ++L     ++pd
  CCG92151.1  71 KLEEAQKAISRAMELRPNDPRAIVLAARIYLKQKDYERAEKELYKVFKIQPD 122
                 678999*********************************9999777766665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.75
       TPR_9  42 lGclsaAladLeaylalapd 61 
                   ++++Al  +e+++ ++p 
  CCG92151.1 137 KKDFKEALYRFEQAALHDPM 156
                 45788888888888888884 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   1.1e-05     0.011       9      62 ..      77     128 ..      69     157 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-05
      TPR_20   9 aeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaark 62 
                 +++ +a++ +p+d  a +  A+ +l++++ye A ++L++++k + ++  + a +
  CCG92151.1  77 KAISRAMELRPNDPRAIVLAARIYLKQKDYERAEKELYKVFKIQPDY--GPAYQ 128
                 678889999*********************************99988..55544 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       7.2   6.8e+03      15      15 ..      75      75 ..      60      90 .. 0.55
   2 !    7.2   0.1    0.0062       5.8       3      19 ..      94     110 ..      92     113 .. 0.86
   3 !    6.6   0.0    0.0098       9.2       1      31 [.     126     154 ..     126     159 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7.2
       TPR_7 15 y 15
                 
  CCG92151.1 75 A 75
                2 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0062
       TPR_7   3 lnLarlysrlGdyeeAi 19 
                 +  ar+y ++ dye+A+
  CCG92151.1  94 VLAARIYLKQKDYERAE 110
                 6679************8 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0098
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 a+ +L++++++  d++eA+  +eq  a   d
  CCG92151.1 126 AYQYLGEVFFAKKDFKEALYRFEQ--AALHD 154
                 7899******************99..65544 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00085       0.8      21      74 ..      66     119 ..      58     141 .. 0.84
   2 ?    4.1   0.0     0.037        35      42      90 ..     155     206 ..     136     212 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00085
  HrpB1_HrpK  21 alasedtedaellLdalrvLrPevaeldllegvlliergrweeAlrlLreveae 74 
                 a +  + e+a++ +     LrP+ + + +l + ++++++++e A + L +v + 
  CCG92151.1  66 AFKRLKLEEAQKAISRAMELRPNDPRAIVLAARIYLKQKDYERAEKELYKVFKI 119
                 5567788999999999999*************************9998887655 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.037
  HrpB1_HrpK  42 PevaeldllegvlliergrweeAlrlLreve...aeasgtpyakaLlAlcLa 90 
                 P ++e+ l      i  gr+ +A  lL+e++   ++++g  +a a l  +++
  CCG92151.1 155 PMNKEILLKRIYCEIGLGRLLGAENLLSELSafdEASPGYYFARAALCRVQK 206
                 777788888888899***************9765666666666665555444 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   0.00033      0.32      40     102 ..      39      99 ..      22     104 .. 0.68
   2 ?    3.4   0.0     0.088        84      66      97 ..      97     130 ..      94     139 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00033
      HemY_N  40 llrlparvrrwrrrrrerkarealseGlialaeGdfarAekaaakaaklsea.pllayllaAqA 102
                  ++ ++ + +  ++ + r   +a +++l+a+     ++A+ka+++a +l ++ p  a +laA+ 
  CCG92151.1  39 AWGWSEVLEN--QKEKDRVFFQAYQDALVAFKRLKLEEAQKAISRAMELRPNdP-RAIVLAARI 99 
                 2232222222..3556667789****************************9945.999999986 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.088
      HemY_N  66 GlialaeGdfarAekaaakaaklsea..pllayl 97 
                 + i l + d++rAek++ k  k +++  p+  yl
  CCG92151.1  97 ARIYLKQKDYERAEKELYKVFKIQPDygPAYQYL 130
                 56788999*********99988886667777666 PP

>> Coatomer_E  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   6.4e-05     0.061     109     226 ..      63     183 ..      43     195 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.4e-05
                 HHHHHHTT-HHHHHHHHTT--SH...H..HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-HHHHHHHHHH.HHHH-TTHHHHHHHHHHHHHHHS---H CS
  Coatomer_E 109 aivflkegdfddalkllkksenL...e..avAlkvqillklhrvdlAekelkkmqdidedatltQLAqawv.klavggekiqdAyyifqelsekykstp 201
                 a+v +k  + ++a k++++   L   +  a  l   i+lk +  + Aekel k+ +i+ d      A  ++ +++ + + +++A+y f++ + + +++ 
  CCG92151.1  63 ALVAFKRLKLEEAQKAISRAMELrpnDprAIVLAARIYLKQKDYERAEKELYKVFKIQPDYGP---AYQYLgEVFFAKKDFKEALYRFEQAALHDPMNK 158
                 677777777778888877776663332224557789**********************99753...4444426788889**************99**** PP

                 HHHHHHHHHHHHTT-HHHHHHHHHH CS
  Coatomer_E 202 lllngkAvvslllgryeeAeslLke 226
                  +l  +  +++ lgr   Ae+lL e
  CCG92151.1 159 EILLKRIYCEIGLGRLLGAENLLSE 183
                 **********************987 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.66   6.3e+02      10      32 ..      66      88 ..      54      89 .. 0.63
   2 ?    9.8   0.3    0.0013       1.3       2      32 ..      92     122 ..      91     123 .. 0.86
   3 ?    4.0   0.1     0.098        93       2      26 ..     126     150 ..     125     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.66
                HHH.HHHHHHHHHHHHHHHHH-TT CS
       TPR_6 10 yrk.lgdtdkAlealerlikeYPd 32
                 +k l + ++A +a  r  +  P+
  CCG92151.1 66 AFKrL-KLEEAQKAISRAMELRPN 88
                33336.667777776666666665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPd 32 
                 A  ++a+ y+k++d+++A + l ++ k  Pd
  CCG92151.1  92 AIVLAARIYLKQKDYERAEKELYKVFKIQPD 122
                 66789**************988888888887 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.098
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerl 26 
                 A+ +l++ +++ +d  +Al  +e+ 
  CCG92151.1 126 AYQYLGEVFFAKKDFKEALYRFEQA 150
                 66789******88******999986 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       5.3     5e+03      13      30 ..      67      84 ..      63      86 .. 0.62
   2 ?    6.8   0.1    0.0067       6.3       9      31 ..      97     119 ..      96     120 .. 0.89
   3 ?    2.0   0.1      0.21     2e+02       5      28 ..     127     150 ..     126     151 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.3
      TPR_10 13 rqrgrydeAealleeala 30
                ++r +++eA +   +a++
  CCG92151.1 67 FKRLKLEEAQKAISRAME 84
                566777788766655555 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0067
      TPR_10   9 analrqrgrydeAealleealai 31 
                 a+++ ++++y++Ae+ l ++  i
  CCG92151.1  97 ARIYLKQKDYERAEKELYKVFKI 119
                 899************99988766 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.21
      TPR_10   5 lnNLanalrqrgrydeAealleea 28 
                 +  L+ + ++ ++++eA+  +e+a
  CCG92151.1 127 YQYLGEVFFAKKDFKEALYRFEQA 150
                 667999999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 1446.26
//
Query:       CCG92152.1  [L=254]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1639.77
//
Query:       CCG92153.1  [L=48]
Description: hypothetical protein MFUM_390004 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 335.80
//
Query:       CCG92154.1  [L=1012]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-74  249.7   0.0    7.6e-74  249.0   0.0    1.3  1  Tubulin_2       Tubulin like
    0.00048   20.4   0.0      0.063   13.5   0.0    3.1  3  Tubulin         Tubulin/FtsZ family, GTPase domain
     0.0061   16.5   0.9     0.0061   16.5   0.9    3.6  4  Prefoldin_2     Prefoldin subunit
     0.0096   15.9   0.6      0.041   13.9   0.6    2.1  1  SOAR            STIM1 Orai1-activating region
  ------ inclusion threshold ------
      0.032   14.5   0.8       0.16   12.3   0.7    2.3  1  DUF5082         Domain of unknown function (DUF5082)
      0.072   13.3   5.5       0.72   10.1   0.8    3.0  2  DUF3958         Protein of unknown function (DUF3958)
       0.14   12.4   4.3       0.21   11.8   0.2    3.1  3  WXG100          Proteins of 100 residues with WXG
       0.69    9.8  12.5        3.8    7.4   2.0    3.8  3  Apolipoprotein  Apolipoprotein A1/A4/E domain
       0.99    9.4   6.5        0.1   12.5   1.4    2.0  2  YscO            Type III secretion protein YscO


Domain annotation for each model (and alignments):
>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.0   0.0   3.8e-77   7.6e-74       1     346 [.       6     347 ..       6     349 .. 0.89

  Alignments for each domain:
  == domain 1  score: 249.0 bits;  conditional E-value: 3.8e-77
   Tubulin_2   1 lviGLGGtGgkvlaelrrrlreelgslelpdkvq..FlyiDtdeneknrlkdatdetaekageslksrekealsissaevdrilrnllreetasaypsi 97 
                 l+iGLGGtGgk+++++r+ +++e+ ++  p++v+  +ly+D++++ ++     +d+++++ g+s++   +++l+i+s+++++il++l      ++yp i
  CCG92154.1   6 LIIGLGGTGGKIIRAFRKTIFQEF-RKIDPPNVRlsYLYVDSSDELMRL----DDPSWKVLGQSVQIPPTSQLLIKSSNLASILEDL------PSYPGI 93 
                 89**********************.89999999889***********44....599*******************************......99**** PP

   Tubulin_2  98 eeWlppeleelrkapes...eGAGqiRtvGRlalfanleeirealrdaikrlrgsageeeglnvfVvgSLaGGTGSGiflDvayllrkilkeekqkvki 193
                 + W+ ++  ++++++++   +  Gq+R++GR++++++++e++++l +++++++++  +++ ++++V+++LaGGTGSGi++D++ ++rk ++++ q ++i
  CCG92154.1  94 QPWIGDKTIWRDILNSIigdAIGGQKRRLGRFLFASHADEFCRRLTHLVNEIQKG--GQQDVTFHVCCGLAGGTGSGILIDCVSQIRKNYPDTLQ-YRI 189
                 **************999998889*******************************3..6899*********************************8.99* PP

   Tubulin_2 194 iglvllPdvfplnkeggervkaNayaaLkELnalkdsdeetelevkypngdvtvvkrlst....PfdtcyLvsnkneegkeilersklmelvadnifls 288
                 i++ llP+ +p++++++ +++aN+yaaL ELna         + +k+ + d+++ +r+ +    Pf+ cy+++n ne+g +++  +++++++ad+++++
  CCG92154.1 190 ILYTLLPEEHPKPNWNTGNYHANGYAALLELNA--------LSIGKFYPCDIAGDGRKLEelktPFNGCYVFTNFNENGLAVDISEDIPNILADFLYQK 280
                 *********************************........77777777888888888777888******************99999************ PP

   Tubulin_2 289 lasef....apsgkgirdnisneeslnkekleqa...........ystfGlasieiPvdeiaeylakrlaaqa 346
                 +++           g+ +n  n  + n e+   +           ++tfG++++++P+ ei ey+a+++a+qa
  CCG92154.1 281 IVTVRninwE--SLGRAENAENG-DGNPET---LpgsndpvrskrFLTFGVKRLSVPESEISEYIAFQFARQA 347
                 ***9444331..33333322222.222222...133366688999**************************98 PP

>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.058   1.1e+02       3      26 ..       6      29 ..       4      53 .. 0.81
   2 !   13.5   0.0   3.2e-05     0.063     117     156 ..     153     192 ..     125     206 .. 0.79
   3 ?   -2.1   0.0       1.8   3.6e+03      80     112 ..     447     479 ..     442     481 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.058
                EEEEEHHHHHHHHHHHHH...HHH CS
     Tubulin  3 ivigvGqcGnqignelwellakeh 26
                ++ig+G+ G++i+ ++ +++ +e+
  CCG92154.1  6 LIIGLGGTGGKIIRAFRKTIFQEF 29
                78**************99988885 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.2e-05
                 SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE CS
     Tubulin 117 qgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvl 156
                   f ++ +l+GGTGSG+    ++ ++++yp++l + ++ +
  CCG92154.1 153 VTFHVCCGLAGGTGSGILIDCVSQIRKNYPDTLQYRIILY 192
                 3599**************************9998877655 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.8
                 CCCCTTC--TT-HHHHHHHHHHTHHHHHHHHTT CS
     Tubulin  80 kegagnngaggypevgkeaaeeileeirkevek 112
                 +e+ +++g+++ +e+ ++ ++e ++eir+++e+
  CCG92154.1 447 QEQYRGQGVKAFYETVSQSTRERAREIRQKLER 479
                 567789999999999999**********99985 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.9   3.1e-06    0.0061      62      99 ..     501     538 ..     496     541 .. 0.92
   2 ?   -2.3   0.0       2.2   4.4e+03      55      78 ..     591     614 ..     589     616 .. 0.60
   3 ?   -1.7   0.6       1.4   2.8e+03      74     104 ..     640     670 ..     637     672 .. 0.76
   4 ?   -2.4   0.6       2.3   4.6e+03      64      79 ..     958     973 ..     947     988 .. 0.37

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.1e-06
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  62 evkeeLeerketlekeiktlekqleklekeleelkeel 99 
                   ++++L++r +++e+ei++l+ q+e+l k+l+e+++e 
   CCG92154.1 501 ALIPHLKARFDRIEEEITKLKPQEEELAKKLSEQQKEW 538
                  6899*******************************986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.2
                  EEEE-HHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  55 lvkqdkeevkeeLeerketlekei 78 
                  l+k d++++ ++  e+++  e +i
   CCG92154.1 591 LLKADVDKAASMIAESIKAFEDQI 614
                  666666666666666666665555 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.4
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTS CS
  Prefoldin_2  74 lekeiktlekqleklekeleelkeelqkklq 104
                  ++ + k+l k +++  ++ + +++ + +kl+
   CCG92154.1 640 VKNVTKRLIKDQKEATTQTQRVRTAIAEKLG 670
                  5667788888888888888888888888877 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 2.3
                  HHHHHHHHHHHHHHHH CS
  Prefoldin_2  64 keeLeerketlekeik 79 
                  ++  e ++e   kei+
   CCG92154.1 958 LKSPEMKLEPKRKEIE 973
                  3333333333322222 PP

>> SOAR  STIM1 Orai1-activating region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.6     2e-05     0.041      45      95 ..     493     543 ..     436     547 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2e-05
        SOAR  45 kkrssllgslrlahssslddvdkkileakqaleevtkelkerqeRWqqiek 95 
                    ssllg+l      + d ++++i+++k + ee++k+l+e+q+ W ++  
  CCG92154.1 493 HEISSLLGALIPHLKARFDRIEEEITKLKPQEEELAKKLSEQQKEWAKVGV 543
                 5568999999999999******************************99865 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.7   7.8e-05      0.16      82     120 ..     502     540 ..     450     542 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.8e-05
     DUF5082  82 yvdkldelidaieeEIerLenqiseaqgvldtlqsqlns 120
                  + +l++  d+ieeEI++L+ q +e+ ++l+ +q+++ +
  CCG92154.1 502 LIPHLKARFDRIEEEITKLKPQEEELAKKLSEQQKEWAK 540
                 566788889*************************99975 PP

>> DUF3958  Protein of unknown function (DUF3958)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.8   0.00036      0.72      20      82 ..     417     480 ..     405     481 .. 0.90
   2 ?    4.1   0.3     0.026        51       4      50 ..     511     560 ..     508     565 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
     DUF3958  20 nekelkkqeqlkeeyeehfnqskrlfd.elletfrkdeeshlfeklrdevqrlsrklredLEee 82 
                 ++ +lk+  q ke+ +++  + k l+d +++e++r++    ++e++ + +++  r++r++LE+e
  CCG92154.1 417 VTTNLKEYVQGKETADKWLDRLKNLLDtRFQEQYRGQGVKAFYETVSQSTRERAREIRQKLERE 480
                 56778899999************999758*********************************86 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.026
     DUF3958   4 eelnqelrelaekqeenekelkkqeqlkee...yeehfnqskrlfdelle 50 
                 +++++e+ +l  ++ee+ k+l++q++  ++   + ++f +++rlfd++++
  CCG92154.1 511 DRIEEEITKLKPQEEELAKKLSEQQKEWAKvgvISDMFGKRRRLFDAAST 560
                 66777777777778888888777777666522246788889999988765 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00011      0.21      15      68 ..     423     478 ..     417     479 .. 0.89
   2 ?   -0.8   0.1      0.96   1.9e+03      53      76 ..     510     533 ..     505     542 .. 0.43
   3 ?   -0.8   0.1      0.95   1.9e+03       4      35 ..     635     666 ..     635     671 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHHHHHHHC.GCGCTHHHCHHHHHHHH.HHHHHHHHHHHHHH CS
      WXG100  15 rfqkqaeeledelqrlkaevdal.qsgWsGaaadafqaefe.ewkqaaqklvdaLe 68 
                 ++ + +e+   +l+rlk+ +d   q++++G+  +af ++     ++ a+++ ++Le
  CCG92154.1 423 EYVQGKETADKWLDRLKNLLDTRfQEQYRGQGVKAFYETVSqSTRERAREIRQKLE 478
                 6778899999************99****************9677788899999987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.96
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  53 feewkqaaqklvdaLeeisealkq 76 
                 f+++ ++++kl+ + ee++++l +
  CCG92154.1 510 FDRIEEEITKLKPQEEELAKKLSE 533
                 333444444444444444443333 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.95
                 SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100   4 vdpeelrqaaarfqkqaeeledelqrlkaevd 35 
                 +dpe +  + +r+ k ++e +++ qr++  ++
  CCG92154.1 635 YDPELVKNVTKRLIKDQKEATTQTQRVRTAIA 666
                 6899999999*************999998876 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.0    0.0019       3.8      69     158 ..     436     537 ..     414     540 .. 0.78
   2 ?   -0.6   0.3      0.52     1e+03      15      59 ..     626     671 ..     619     674 .. 0.66
   3 ?    6.9   0.1    0.0026       5.1      38      77 ..     950     989 ..     932    1000 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0019
                     HHHHHHCCHHHHHHHH..HHHHCHHCCHHCHCCHCHHHHHHHHHH...........HHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..---- CS
  Apolipoprotein  69 eelrqrlapyteelre..rlaadaeelqeqlavyaeelrerlerh...........vealkarlapyveelrqklaerleelkeslaphaeevee 150
                     + l++ l++  +e      ++a +e + ++ ++ a+e+r++ler+           + ++ + l++++  l++    r+ee   +l+p+ ee+  
      CCG92154.1 436 DRLKNLLDTRFQEQYRgqGVKAFYETVSQSTRERAREIRQKLERElfsdwingtksAHEISSLLGALIPHLKA-RFDRIEEEITKLKPQEEELAK 529
                     4455555554444322357788888999999999999999999999999999999999999999999999999.556788888899999999999 PP

                     -SSSHHHH CS
  Apolipoprotein 151 rlssrvee 158
                     +ls++ +e
      CCG92154.1 530 KLSEQQKE 537
                     99999877 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.52
                     CHHHCHHCHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH CS
  Apolipoprotein  15 eleeqlaplaq.elrdrlskeleelrarlraeleevrarlepyrde 59 
                     +l++q+ ++++ el+++++k+l + +++ +++++ vr ++++++ e
      CCG92154.1 626 DLRKQVIRFYDpELVKNVTKRLIKDQKEATTQTQRVRTAIAEKLGE 671
                     5666666666666677777777777777777777777666666554 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0026
                     HHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCH CS
  Apolipoprotein  38 lrarlraeleevrarlepyrdevqeqlgqnleelrqrlap 77 
                     l ++++a l++   +lep+r e++ ++ +++ +lr++++p
      CCG92154.1 950 LEQKVEALLKSPEMKLEPKRKEIESEIVKKVNNLRATIKP 989
                     4444555555555677777777777777777777777665 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.4   5.2e-05       0.1      36     131 ..     463     559 ..     449     564 .. 0.92
   2 ?   -3.5   0.3       4.4   8.8e+03      14      30 ..     649     665 ..     641     673 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  36 aresladyrawraqeearlyaeiigklvllkelekvk.qqvalLrekeaelekqveeakqqleaerealrqarkelqearraveKfaelarlvraea 131
                 ++++ ++ r+ r++ e  l+++ i+ + ++ e+  +  + + +L+++  + e+++ ++k q+e+ +++l +++ke ++     + f +  rl++a+ 
  CCG92154.1 463 SQSTRERAREIRQKLERELFSDWINGTKSAHEISSLLgALIPHLKARFDRIEEEITKLKPQEEELAKKLSEQQKEWAKVGVISDMFGKRRRLFDAAS 559
                 56788899***************************99899**************************************9999999999999998876 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.4
                 HHHHHHHHHHHHHHHHH CS
        YscO  14 raekalkrqeqalaear 30 
                 + +k++ +q q++++a 
  CCG92154.1 649 KDQKEATTQTQRVRTAI 665
                 45666666667776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1012 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1221  (0.068102); expected 358.6 (0.02)
Passed bias filter:                      780  (0.0435049); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.43
# Mc/sec: 7064.20
//
Query:       CCG92155.1  [L=532]
Description: Outer membrane protein or related peptidoglycan-associated (Lipo)protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-18   64.3   0.0      2e-17   63.4   0.0    1.5  1  OmpA        OmpA family
    1.4e-15   57.8   0.0    2.6e-15   56.9   0.0    1.5  1  PBP_like_2  PBP superfamily domain
  ------ inclusion threshold ------
      0.089   12.5   0.0       0.38   10.4   0.0    1.9  1  SBP_bac_11  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   3.3e-21     2e-17       2      95 .]     427     521 ..     426     521 .. 0.94

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 3.3e-21
                 B-TTS--B-GGGHHHHHHHHHHHHS-S--...EEEEE---S---HHHHHHHHHHHHHHHHHHHHHTTSSGGGEEEEE-TT--------------EE. CS
        OmpA   2 FapgsseLtpkaksaldkiaellkkpeqk...itveGhtdaagseernweLSqkRAeaVanylqnegvppsrisvsgyGaerpitanntaekkarnr 95 
                 F +gs eL++k   +++++a++l +p++k   + ++G+td+ g++ +n  LS +RA++Van+l++eg+      v g G+e p+++n+t++++++nr
  CCG92155.1 427 FRFGSKELDNKGIVDIKRLAQFLSEPANKdkgVLLIGFTDNVGNHTYNLGLSFERAQSVANALKKEGIIVVS--VAGAGEEMPVASNDTEAGREKNR 521
                 9***********************66666679************************************8775..5********************98 PP

>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   4.3e-19   2.6e-15      87     281 ..     200     368 ..     150     369 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 4.3e-19
  PBP_like_2  87 qvpvaigaialvvnkdnpln.lsreaLakIfsgkItnWndvlglpadgpIkvvhrsdgsgttflfstalaeqgpwtasgigasgsegvasav.snngai 183
                 ++ ++ +a++++vn++npln ls e+L+kIfsg+It+W++ l+lp +g I ++++   s++ + + + +    p + + +++ g e++++av  n+   
  CCG92155.1 200 EIVIGQSALTVMVNNQNPLNsLSLEQLEKIFSGNITHWKE-LNLPYQGEIILFVPDQRSSCSNQTLSSFFRHMPIDRTRVKTIGIEEMKKAVsDNPTSL 297
                 677778899******************************9.99999**************77766666666778999999999999999998688**** PP

  PBP_like_2 184 gyvsvaywlavkgysladvtngagkfvlptaataasalkvakias..nplawslqpveeniadgayPlsrftyiivyqpyayhgnnaalakaFldylls 280
                 g++++ +        + +         +++     +    +ki s   ++a+  +p+  +i+  +yPl   +y++v ++       + ++++F++y+ls
  CCG92155.1 298 GIADYPSVS------QPF---------GAN-----EN---VKILSlfMKGAEAFKPNRFTIGTEEYPLAFRLYLYVTDKN------SSWIQKFIHYVLS 367
                 **9998444......222.........222.....22...2223333456777999999999****************65......************9 PP

  PBP_like_2 281 d 281
                  
  CCG92155.1 368 T 368
                 6 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.4e-05      0.38      71     229 ..     198     379 ..     174     380 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.4e-05
                 GG-EEEEEEEEEEEESTT-TT---SHHHHHHS.................S--EEEE--T-TTTTHH.HHHHGGG..........--HHHHHHHHHTEEE CS
  SBP_bac_11  71 esavplassplviavpkgnpkkikgwadLlkp.................glklavadPttspsGlaalalleaa..........gaqellkalekkvvk 142
                 +++ ++  s l ++v+  np ++ ++++L k                  ++ l v+d ++s s +   +++++           g +e+ ka++++ + 
  CCG92155.1 198 DHEIVIGQSALTVMVNNQNPLNSLSLEQLEKIfsgnithwkelnlpyqgEIILFVPDQRSSCSNQTLSSFFRHMpidrtrvktiGIEEMKKAVSDNPTS 296
                 566666677777777777764433333333322233333333333365555667777666666666666666444444333333224566666666655 PP

                 EESSHHHHHHH.HHTTT.-SEEEEEHHHHH..HSTTSSEEEE--TTT--...EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT- CS
  SBP_bac_11 143 lgessrqllta.veage.adagivyeseakaaengdkleavylpeglnldpldypaavlkkaakreaAraFlafLrspeaqailrkyGf 229
                 lg ++ + +++ ++a+e + ++      a    + ++   +++  + +  pl++ + +  +++++   ++F+++++s ++q+ + + Gf
  CCG92155.1 297 LGIADYPSVSQpFGANEnVKILSLFMKGAE---AFKP-NRFTIGTEEY--PLAFRLYLYVTDKNSSWIQKFIHYVLSTQGQKCVSSMGF 379
                 555444444444555432343333333332...1222.2233333333..566666667777889***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      759  (0.0423336); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 3864.17
//
Query:       CCG92156.1  [L=521]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0041   17.1  24.9     0.0075   16.3  24.9    1.4  1  Gly-zipper_Omp   Glycine zipper
     0.0056   16.8   0.8       0.18   11.9   0.0    2.4  2  Ada3             Histone acetyltransferases subunit 3
  ------ inclusion threshold ------
      0.023   14.0   0.1      0.053   12.9   0.1    1.6  1  DUF4407          Domain of unknown function (DUF4407)
      0.084   12.6  37.2       0.14   11.9  37.2    1.4  1  Gly-zipper_YMGG  YMGG-like Gly-zipper
       0.14   12.1   2.5        2.1    8.2   1.0    2.5  2  Phage_Mu_Gam     Bacteriophage Mu Gam like protein
       0.28   10.8   4.5        9.6    5.9   0.8    2.4  2  DUF2312          Uncharacterized protein conserved in bacteri
       0.68    8.9   3.2        1.1    8.2   3.2    1.3  1  DUF3987          Protein of unknown function (DUF3987)
        1.2    7.6   3.7        1.8    7.0   3.7    1.3  1  Rrn6             RNA polymerase I-specific transcription-init
        1.7    8.5  36.1        3.2    7.6  36.1    1.4  1  Gly-zipper_OmpA  Glycine-zipper domain


Domain annotation for each model (and alignments):
>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3  24.9   3.7e-06    0.0075       2      41 ..     351     389 ..     350     397 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.7e-06
  Gly-zipper_Omp   2 GaaiGAaaGaliGgavggrgtGaliGAavGaavGgliGaa 41 
                     Ga+iGAa GaliGg +gg g+Ga  GA  G ++Ggl G +
      CCG92156.1 351 GAGIGAAGGALIGGLAGG-GAGAGWGALGGLILGGLGGGY 389
                     9*************9995.555555555555555554443 PP

>> Ada3  Histone acetyltransferases subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   9.3e-05      0.18      64     109 ..     295     346 ..     291     372 .. 0.72
   2 ?    0.0   2.9      0.44   8.8e+02      42      72 ..     404     434 ..     400     441 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.3e-05
        Ada3  64 elvkermayqeyqtiledlDkqvqqaYlK...rtrtlkkkkkkkrsga...a 109
                  l +e  ++ ++ + l+++Dkqv q+Y      + ++++k k  ++g+   +
  CCG92156.1 295 ALSQEDNQWTDLANRLKEIDKQVAQVYAEaksEISSPGRKPKYLQPGTggpT 346
                 57789999*******************9843444466777776666553331 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.44
        Ada3  42 rrlqaeLrevsliNgarkarLlelvkermay 72 
                     a Lr+ +++ +++k+rLle  ++++++
  CCG92156.1 404 AAHNAALRRAAAKAREEKERLLEQYSQELRQ 434
                 567889*****************99998865 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   2.7e-05     0.053     131     230 ..     292     436 ..     265     449 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.7e-05
     DUF4407 131 ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk........gtgttgvaGkgpaake.................................. 187
                 l + l+++++q ++l + +++ ++++++ +aea++e++           gtg + +        +                                  
  CCG92156.1 292 LATALSQEDNQWTDLANRLKEIDKQVAQVYAEAKSEISSPGrkpkylqpGTGGPTT--------Aaegagigaaggaligglagggagagwgalgglil 382
                 78999********************************9644767777663333333........223344455779999******************** PP

     DUF4407 188 .............kkaqldaaqaelaelkakldatarlaalraelaeleaeraker 230
                              k+a+ ++  a  a+l++   a+++++++++ l++  +e+++ +
  CCG92156.1 383 gglgggyysyekeKRAWRARVAAHNAALRRA--AAKAREEKERLLEQYSQELRQMA 436
                 ********97766666666666666666666..55555555555555555544433 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  37.2     7e-05      0.14       2      46 .]     347     389 ..     346     389 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7e-05
                      ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-H CS
  Gly-zipper_YMGG   2 gavrGAaiGAaaGAvvGaliGsgggkGAaiGAaaGalaGgaiGaq 46 
                       a+ GA+iGAa+GA++G+l+G  gg GA++GA  G + Gg+ G++
       CCG92156.1 347 TAAEGAGIGAAGGALIGGLAG--GGAGAGWGALGGLILGGLGGGY 389
                      5899*****************..999****************987 PP

>> Phage_Mu_Gam  Bacteriophage Mu Gam like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.07   1.4e+02      34      80 ..     297     342 ..     290     349 .. 0.76
   2 ?    8.2   1.0    0.0011       2.1      10      47 ..     402     439 ..     398     446 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.07
                   HHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH-..-----EE-SS-E CS
  Phage_Mu_Gam  34 ekleaeleplkkeieylesllkqYaeankdeLfkdgktKslklpfGk 80 
                    + +++   l+++ +++ +++ q + + k+e+ + + +K++ l  G+
    CCG92156.1 297 SQEDNQWTDLANRLKEIDKQVAQVYAEAKSEI-SSPGRKPKYLQPGT 342
                   56677888889999999998888777777788.68888888777766 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0011
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH CS
  Phage_Mu_Gam  10 kiaelkreleeieaeaneeiaaikekleaeleplkkei 47 
                   ++a++++ l ++ a+a ee++++ e++ +el ++++++
    CCG92156.1 402 RVAAHNAALRRAAAKAREEKERLLEQYSQELRQMAENR 439
                   6899****************************998765 PP

>> DUF2312  Uncharacterized protein conserved in bacteria (DUF2312)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.2     0.005        10      16      36 ..     307     327 ..     298     328 .. 0.86
   2 ?    5.9   0.8    0.0048       9.6      48      71 ..     409     432 ..     406     433 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.005
     DUF2312  16 eeEkkaiaedikdvyaeaKse 36 
                  +  k+i +++ +vyaeaKse
  CCG92156.1 307 ANRLKEIDKQVAQVYAEAKSE 327
                 556699*************96 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0048
     DUF2312  48 klrkkdkdereEeeallelYkaAl 71 
                 +lr+  ++ reE+e lle Y + l
  CCG92156.1 409 ALRRAAAKAREEKERLLEQYSQEL 432
                 6999****************9876 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.2   0.00056       1.1      77     127 ..     391     444 ..     389     448 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00056
     DUF3987  77 eyeaekkaweaelealekkaakak...eakaeealaeleaeepeePklprllvd 127
                 +ye+ek+aw+a+ +a  +++++a+   ++++e+ l++  +e  ++ +++rl ++
  CCG92156.1 391 SYEKEKRAWRARVAAHNAALRRAAakaREEKERLLEQYSQELRQMAENRRLALS 444
                 588888888888777777777776777999999999999999999999999876 PP

>> Rrn6  RNA polymerase I-specific transcription-initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.7   0.00088       1.8     744     826 ..     403     474 ..     390     517 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00088
        Rrn6 744 esaleaeeqrqrarrkrekrrrrkeklklasraeasssssssqssssksssssssqlpsssqvptlpdfslsmqissSQvvss 826
                 ++a+     + + rr+++k r +ke+l+ + ++e+ ++++++       s++s    pss+ +p++p   + m + sSQ+ ++
  CCG92156.1 403 VAAH-----NAALRRAAAKAREEKERLLEQYSQELRQMAENRRLAL---SGASPIFNPSSQ-SPQTPA--PYMPTASSQPLPP 474
                 3333.....4467888899999999988888999888887555544...333333333333.344444..4688889998765 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  36.1    0.0016       3.2       3      42 ..     347     385 ..     346     387 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0016
  Gly-zipper_OmpA   3 gAavGAalGAaaGAavGaitGsaGtGAaiGAasGavaGll 42 
                      +Aa GA++GAa+GA++G+ +   G+GA+ GA  G++ G+l
       CCG92156.1 347 TAAEGAGIGAAGGALIGGLA-GGGAGAGWGALGGLILGGL 385
                      7******************8.4677777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1649  (0.0919739); expected 358.6 (0.02)
Passed bias filter:                     1175  (0.0655363); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 3183.27
//
Query:       CCG92157.1  [L=252]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.15   11.5   0.0       0.19   11.1   0.0    1.1  1  RPN1_RPN2_N  RPN1/RPN2 N-terminal domain
       0.48   10.7  11.9       0.51   10.6   6.5    2.3  2  DUF1761      Protein of unknown function (DUF1761)
        3.4    7.8   9.8        2.1    8.5   6.4    2.0  2  DHHC         DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> RPN1_RPN2_N  RPN1/RPN2 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.3e-05      0.19      44     108 ..      41     101 ..      33     118 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.3e-05
  RPN1_RPN2_N  44 LrphyetlkeiyetlkkskakklladilsvlamtlsdegkresLkyrlegskedigsWGheYvrh 108
                  L +hy++l +   t+k + ++  ++ i s+  mt+   ++  +L +  ++ +++i++WG+e vr+
   CCG92157.1  41 LASHYTQLWNR--TFKVKLVHHFFCGIASL--MTFIFVSTFFCLGFTKTAGRDQINRWGYELVRN 101
                  45555555443..23333344445555555..4444455899*********************98 PP

>> DUF1761  Protein of unknown function (DUF1761)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   6.5   8.5e-05      0.51      44      99 ..      21      79 ..      12      85 .. 0.94
   2 ?    3.0   0.2     0.019   1.1e+02       2      90 ..     143     232 ..     142     248 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.5e-05
     DUF1761 44 alamglslvlslliayvlaallaalga...rtfkagallglllglgfiapaiisnalfe 99
                +l + l+l++s+++a +  +l  ++++   rtfk ++++ ++ g++  ++ i+++ +f+
  CCG92157.1 21 PLYFWLTLLFSFFLAGFCWWLASHYTQlwnRTFKVKLVHHFFCGIASLMTFIFVSTFFC 79
                678999***********************************************999986 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.019
     DUF1761   2 avllaalaafvvGflwYgpvFgkaWmkergmteekakeaenk...alamglslvlslliayvlaallaalgartfkagallglllglgfiap 90 
                  v+++ +++   +fl  +p++gk+     ++t+++  +++ +    +  g+++     i +  ++l+  l+++t   ++l+ +ll++ f ++
  CCG92157.1 143 TVATIYVSNATKSFLSMHPFLGKILD--LNITKAETLAKKDMdayFALGGTTYDDRRAIGLISSYLIWSLDQQTPRLSFLFRVLLVVLFLFT 232
                 57788888889999999999999998..5555555555555666544444444444555555555555556655555555555555555544 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.4   0.00035       2.1      51     120 ..      13      84 ..      10      97 .. 0.69
   2 ?   -0.3   0.1      0.18   1.1e+03      94     101 ..     225     232 ..     187     249 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00035
        DHHC  51 Fllfllylllllilalv..lllialvklveeekkseflavtllkkllsilllvlsllfllllgllllfhlyl 120
                 F+lfl    l+++l+l+  ++l ++++ + +++++ ++++++ k + ++++ + sl+ +++++ +++  ++ 
  CCG92157.1  13 FFLFLYQRPLYFWLTLLfsFFLAGFCWWLASHYTQLWNRTFKVKLVHHFFCGIASLMTFIFVSTFFCLGFTK 84 
                 556665444444443332245556666666777777777777777889****************99987765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.18
        DHHC  94 llsilllv 101
                 l++++l++
  CCG92157.1 225 LVVLFLFT 232
                 11222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1804.61
//
Query:       CCG92158.1  [L=193]
Description: Globin domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-16   59.3   0.0      5e-16   59.0   0.0    1.1  1  Protoglobin  Protoglobin


Domain annotation for each model (and alignments):
>> Protoglobin  Protoglobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   2.8e-20     5e-16      12     155 ..      20     160 ..      10     162 .. 0.94

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 2.8e-20
                  TT-SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSHHHHHHHCHHCHHHHHHHHHHHHHHHCCCSSCCHHHHHHHHHHHHHHCHCT--HHHHHHCHH CS
  Protoglobin  12 lglteedlaaLralapliealipavvdafYekllsfpetarifetssqierlkdflksyllklfsgpfdsayveyldkvGkmhtrlgleprwyiaalg 109
                  l+++++d+a+ ++ +p+ e+l ++ v+ fY+ l  +p t  if++ + +  +   l+++++++ +gpfd  y+ ++ +vG++h + +++   +i+  g
   CCG92158.1  20 LRFNAHDEAVFQKFKPFHEKLSEKFVKGFYDILFGYPTTQSIFKP-DERPLREPDLQRWWQRTITGPFDINYWSWQAAVGVIHIKRKVKNPMMISIWG 116
                  89*******************************************.66667777788999************************************** PP

                  HHHHHHHHHHCCCS.-SHHHHHHHHHHHHHHHHHHHHHHCGGGBXT CS
  Protoglobin 110 lvqevlleallekeklsaaektalvkalnKliwldndlaleaYvre 155
                  +++ +l +  + +   s+++ ++++ ++ +l+     l++e Y + 
   CCG92158.1 117 WILLTLQKEFSMNY--SLQDTFEAMDSWHRLAITVESLIAESYLHN 160
                  **************..***************999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1653.53
//
Query:       CCG92159.1  [L=458]
Description: pyridine nucleotide transhydrogenase, beta subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     1e-174  581.8   7.9   1.2e-174  581.6   7.9    1.0  1  PNTB          NAD(P) transhydrogenase beta subunit
  ------ inclusion threshold ------
      0.016   15.0   0.1       0.18   11.5   0.1    2.4  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain


Domain annotation for each model (and alignments):
>> PNTB  NAD(P) transhydrogenase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  581.6   7.9  1.3e-178  1.2e-174       2     458 ..       6     452 ..       5     454 .. 0.95

  Alignments for each domain:
  == domain 1  score: 581.6 bits;  conditional E-value: 1.3e-178
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        PNTB   2 elaylvaallfilglkglsspktarrgnllgavgmllavvatlllllkeaaseelalillalvigaviGlllakkvemtemPqlvallnslvGlAavlv 100
                 +++y+++a lfil+lk +s+ kt+r gn+ g++gm+la++at  ll+ e +  ++ +i++++viga iG+ +a  + mt++Pq  al +++++lAa +v
  CCG92159.1   6 QFVYIASASLFILSLKWMSEVKTSRWGNWAGTAGMALAILAT--LLKPEIH--SFLWIAIGIVIGASIGTPMAMLMPMTAVPQRTALSHAFGALAAGIV 100
                 789***************************************..5555553..4789****************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..X...........XXXXXXXXXX CS
        PNTB 101 alaelleeeaekaeealeavelvelvlgvliGavtftGslvAflKLqgllsskplklpgrkllnlllllalvvllvlfvla..asslllllllvlalll 197
                 + ae++ + a     +l++ +l+ l+++vl+G +tftGsl+Af+KLq++++++p+ +pgr+l++l +++ +++l++++v++  ++ +l+ ++++l+ll+
  CCG92159.1 101 GSAEYFLHGA-----NLSMPQLIVLCVEVLLGFLTFTGSLLAFGKLQEIIPTRPILYPGRNLVSLSVFVFSLFLIAYLVIKggSHPFLFGFIVCLSLLF 194
                 *****99865.....36899*******************************************************99999965555566899999**** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....X--S-EESHH CS
        PNTB 198 GvllvlpiggaDmpvvisllnsysGlaaaaaGfvlenklLiivGalvgasGaiLsyimckamNrsllnvllggfgaaassekaeeeekeekevkeisae 296
                 G+llvlpiggaDmp vis+ln+y+Gl+ +++Gf+l+nklLii+Gal g+sG+iLs  mckamNrs++nvl+gg+g+  + +   + +++ k vk+ s +
  CCG92159.1 195 GILLVLPIGGADMPTVISILNAYAGLSSSFMGFLLNNKLLIIAGALDGSSGLILSIQMCKAMNRSFTNVLFGGVGQILEVA---DPSRDGKIVKSLSPR 290
                 **************************************************************************5333333...334456699****** PP

                 HHHHHHHC-SEEEEEE-HHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSSTTHHHHHHHHCT--GGGEEEHHHHCCGGGG-SEEEEES-SCCC-C CS
        PNTB 297 dvaellkeakkviivPGYGlavaqAqhavaelaklLeekgveVkfaiHPvAGRmPGhmnVLLAeadvpydkvlemdeineefaetDvalViGAnDvvnp 395
                 ++  l+++akkv++vPGYG+a aqAqh v+el+++Le++++eVkfaiHPvAGRmPGhmnVLLAeadvpydk++em+ein+ f+etD++lV+GAnD++np
  CCG92159.1 291 EASILFEAAKKVVVVPGYGMAAAQAQHVVKELTDVLENRNIEVKFAIHPVAGRMPGHMNVLLAEADVPYDKLVEMEEINPLFPETDIVLVVGANDITNP 389
                 *************************************************************************************************** PP

                 HHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTT--S-GGGGSTTEEEEES-HHHHHHHHH CS
        PNTB 396 aakedpnspiagmPvlevekakkvivlkrslasGYagveNplFykentsmlfgdakksleell 458
                 aa+++p+sp++gmP+l+v+kak+++++krs+++G+ag++N+lFy+++t mlfgdakk+l+el+
  CCG92159.1 390 AARKNPGSPLYGMPILDVDKAKQILFIKRSMSTGFAGIDNDLFYSPKTIMLFGDAKKVLNELV 452
                 ************************************************************997 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     2e-05      0.18       6      90 ..     294     385 ..     290     451 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2e-05
                   HHHHH-SSEEEEE-CHHCHTTGHHHHHHH...HHHHT-EE.EEEGGGTTSS-TTSTTEEEESGGGS.........CHHHHHHHHH-SEEEEES-SSS CS
  TPP_enzyme_M   6 ellkaakrpvilvGggvarsgaseelrel...aeklgiPv.vttlmgkgvipedhplylgmlglhg.........skaanealeeaDlvlalGarfd 89 
                    l +aak++v++ G g+a ++a++ ++el   +e+ +i v +     +g +p     ++ +l   +          ++ n ++ e+D+vl++Ga+  
    CCG92159.1 294 ILFEAAKKVVVVPGYGMAAAQAQHVVKELtdvLENRNIEVkFAIHPVAGRMP----GHMNVLLAEAdvpydklveMEEINPLFPETDIVLVVGAN-- 384
                   57889************99987766655500055555555443333344444....333322222223334455588889999999999999954.. PP

                   T CS
  TPP_enzyme_M  90 d 90 
                   d
    CCG92159.1 385 D 385
                   4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3246.33
//
Query:       CCG92160.1  [L=95]
Description: pyridine nucleotide transhydrogenase (proton pump), alpha subunit (part2) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-30  106.0   2.1    1.1e-30  105.8   2.1    1.0  1  PNTB_4TM  4TM region of pyridine nucleotide transhydrogenase,
  ------ inclusion threshold ------
      0.015   14.1   2.5      0.016   14.0   2.5    1.0  1  TctA      Tripartite tricarboxylate transporter TctA family


Domain annotation for each model (and alignments):
>> PNTB_4TM  4TM region of pyridine nucleotide transhydrogenase, mitoch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   2.1   1.3e-34   1.1e-30       2      82 .]      10      93 ..       9      93 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 1.3e-34
    PNTB_4TM  2 ltvfvLalfvGyeviwkVtpaLhtPLmsvtnaisgiiivgallalg...stlakvlgaiavvlasinvvGGFlvtqrmLkmFkk 82
                l+vfvLa f+G e+i +V++ LhtPLms+tnais+i +vg+l ++g   +t++ vlg+ia++ +sin vGGFl+t+r+LkmF+k
  CCG92160.1 10 LYVFVLASFLGLELIRNVSRLLHTPLMSLTNAISSISLVGSLALTGegdKTWVIVLGTIAIIASSINAVGGFLITDRILKMFRK 93
                89********************************************99988999****************************97 PP

>> TctA  Tripartite tricarboxylate transporter TctA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   2.5   1.8e-06     0.016     338     401 ..      14      76 ..       2      83 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-06
        TctA 338 vlllvlgllliklfakllkipkelLlpiilvllvigayalnnslfdvlvmlifgvlGlllrrlg 401
                 vl+ +lgl li+ +++ll  p   L+ +i +++++g+ al++   d + ++++g ++++ + ++
  CCG92160.1  14 VLASFLGLELIRNVSRLLHTPLMSLTNAISSISLVGSLALTGE-GDKTWVIVLGTIAIIASSIN 76 
                 5667789************************************.99999999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 645.13
//
Query:       CCG92161.1  [L=381]
Description: pyridine nucleotide transhydrogenase (proton pump), alpha subunit (part1) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-71  239.7   0.3    2.7e-71  239.3   0.3    1.1  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
    5.6e-39  133.6   0.0    2.9e-36  124.8   0.0    2.2  2  AlaDh_PNT_N      Alanine dehydrogenase/PNT, N-terminal domain
    2.4e-06   27.0   0.5      0.065   12.6   0.0    3.5  4  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
     0.0015   17.8   0.1     0.0022   17.3   0.1    1.3  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
  ------ inclusion threshold ------
      0.021   14.8   0.1      0.066   13.2   0.1    1.8  1  ADH_zinc_N       Zinc-binding dehydrogenase
      0.027   13.6   0.1      0.039   13.1   0.1    1.4  1  GIDA             Glucose inhibited division protein A
      0.057   12.1   0.1       0.27    9.9   0.0    2.0  2  HI0933_like      HI0933-like protein
      0.059   13.6   0.5        0.2   11.9   0.6    1.9  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
       0.16   11.8   0.0       0.34   10.7   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
       0.19   11.0   0.0        0.3   10.3   0.0    1.2  1  Glyco_hydro81C   Glycosyl hydrolase family 81 C-terminal doma


Domain annotation for each model (and alignments):
>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.3   0.3   1.5e-74   2.7e-71       1     213 [.     144     369 ..     144     370 .. 0.99

  Alignments for each domain:
  == domain 1  score: 239.3 bits;  conditional E-value: 1.5e-74
                  HHHHHHHHCSCGCTSEEETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEE..................... CS
  AlaDh_PNT_C   1 AvleaakalekffggkgtlaGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvev..................... 77 
                  A ++aa++l+kf ++ +t aG++p   p+kv+viG+GvaGlqAiata++lga V+++D+rp ++eq+eslgakfv++                     
   CCG92161.1 144 ALIMAANTLPKFLPMLTTPAGTIP---PCKVFVIGAGVAGLQAIATARRLGALVEAYDIRPVAKEQVESLGAKFVNLpitaqdvedrsgyakaqseef 238
                  789*********************...*********************************************************************** PP

                  HCHHHHHHHHHHHH-SEEEE---BTTSS---SC-HHHHHTS-TTEEEEETTGGGT-SBTT--TBBTTSEEEEETTEEEEEBSTGGGGSHHHHHHHHHH CS
  AlaDh_PNT_C  78 lksqeellaeavkeadvvigtvlipGkkaPkLvteemvksMkpgsVivDvAidqGGnvetsrltthgepvveekgvvhygvanlpgavprtasalltn 175
                  +++q++l+ e++k+ad+vi+t+l+pG kaPkL+ +e v+ MkpgsVivD+A++qGGn+e   lt +g++vv+ + v++ g  n++++++ +as  +++
   CCG92161.1 239 YSKQRQLIIEQCKKADIVITTALVPGVKAPKLIAKEAVEMMKPGSVIVDLAAEQGGNCE---LTVPGKTVVQ-NHVIIHGPLNIASTMAPQASLFYSK 332
                  ***********************************************************...********99.9************************ PP

                  HHHHHHHHHCHHHTCCHHHCTSHHHHCCEEEETTEESS CS
  AlaDh_PNT_C 176 ntlpyleelladkglkkalkedealrkglvvkkGkvtn 213
                  n+ ++l+ ++++++l ++ +ede+++k+lv+++Gk++n
   CCG92161.1 333 NIQSFLSLFFKENKL-SIHWEDEIIQKTLVIQEGKIIN 369
                  ***************.********************97 PP

>> AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.0   1.6e-39   2.9e-36       1     135 [.       5     139 ..       5     140 .. 0.99
   2 !    6.7   0.1    0.0048       8.5      32      91 ..     224     288 ..     212     299 .. 0.83

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 1.6e-39
                  EE---SSTT----SS-HHHHHHHHHTT-EEEEETTTTGGGTC-HHHHHHTTEEEESCHHHHCTTSSEEEESS--.CHCGGGS-TTCEEEEE--GGCHH CS
  AlaDh_PNT_N   1 gvpkEikagErRvaltPatvkkLvkaGhevlVesgaGegagfsdeeYeeaGaeivesaeevlaeadlilkVkepseeelellkegqtlisflhlaanp 98 
                  gv+kE+ +gE+Rva++P+   +Lvk G++v VesgaG +ag+ de+Ye+ Ga+i ++a+evl++a++++ +++p++e+++++ e+++lis+l++  n 
   CCG92161.1   5 GVLKEKIPGENRVAIVPEVLPSLVKYGLQVCVESGAGINAGYFDEMYEDKGAKILPTAHEVLKNAHIVCLIHPPRKEDIAHFVENSMLISLLYPLLNL 102
                  799*********************************************************************************************** PP

                  HHHHHHHHCTEEEEEGGG-BSSGCCGGGTHHHHHHHH CS
  AlaDh_PNT_N  99 ellealaekgvtaialElvprisraqsldaLssmaei 135
                  +l+++la++++t+++l+l+prisraqs+d Lss++ +
   CCG92161.1 103 DLVKELAAQKLTVFSLDLIPRISRAQSMDPLSSQSTV 139
                  **********************************987 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0048
                  EETTTTGGGTC-HHHHHHTTEEEES..CHHHHCTTSSEEEESS--....CHCGGGS-TTCEEEEE CS
  AlaDh_PNT_N  32 VesgaGegagfsdeeYeeaGaeive..saeevlaeadlilkVkeps...eeelellkegqtlisf 91 
                  Ve   G + + s+e Y++    i+e  ++++++ + +l+ +Vk+p+   +e +e++k+g++++ +
   CCG92161.1 224 VEDRSGYAKAQSEEFYSKQRQLIIEqcKKADIVITTALVPGVKAPKliaKEAVEMMKPGSVIVDL 288
                  888999999999999998877777646667788889*********7676999********99866 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.058     1e+02      77     112 ..      53      90 ..      37      96 .. 0.68
   2 ?   -4.1   0.0       4.8   8.5e+03     136     154 ..     103     121 ..     103     133 .. 0.82
   3 !   12.6   0.0   3.6e-05     0.065      38      85 ..     170     217 ..     160     225 .. 0.91
   4 !    8.2   0.0    0.0008       1.4      76     127 ..     237     289 ..     224     293 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.058
                   HHTCEEC.SHHHHHHH-SEEEE-S-.-STTTTTSBSHH CS
  2-Hacid_dh_C  77 elgvelv.sleellaesDivslhlp.ltpetrhlinae 112
                   ++g++   + +e+l+++ iv+l  p  +++  h+++++
    CCG92161.1  53 DKGAKILpTAHEVLKNAHIVCLIHPpRKEDIAHFVENS 90 
                   44554444889*********986651556666666655 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 4.8
                   HHHHHHHTTSCCEEEES-- CS
  2-Hacid_dh_C 136 aLleaLksgkiagaalDvf 154
                   +L++ L ++k+  + lD +
    CCG92161.1 103 DLVKELAAQKLTVFSLDLI 121
                   6888899999999988865 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 3.6e-05
                   EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSH CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsl 85 
                   +v +iG+G  G +++ +++ +g+ v ayd ++ ++e++e+lg+++v+l
    CCG92161.1 170 KVFVIGAGVAGLQAIATARRLGALVEAYDIRPVAKEQVESLGAKFVNL 217
                   788******************************9999*****999987 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0008
                   HHHTCEECSHHHHHHH-SEEEE-S-.-STTTTTSBSHHHHHCSTTTEEEEESS CS
  2-Hacid_dh_C  76 eelgvelvsleellaesDivslhlp.ltpetrhlinaeelakmkkgailiNta 127
                   e +  + + + e ++++Div+ ++     +  +li +e+ ++mk+g++++  a
    CCG92161.1 237 EFYSKQRQLIIEQCKKADIVITTALvPGVKAPKLIAKEAVEMMKPGSVIVDLA 289
                   444445556667789999886654415668889****************9876 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.2e-06    0.0022       2      31 ..     170     205 ..     169     290 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.2e-06
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE......T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx......x RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve......l 31 
                  +v viG+G+AGl+a  t+++ ga v  ++      +
   CCG92161.1 170 KVFVIGAGVAGLQAIATARRLGALVEAYDirpvakE 205
                  799*****************9999999965555441 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.7e-05     0.066       3      90 ..     180     290 ..     178     329 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEET.................TTCHHHHHHHHHT..TTSSEEEEEESSC.....SHH.HHHHHH CS
  ADH_zinc_N   3 GlaavqlAkalGaeviavdsseeklelakklGadeviny.................keadlverikelt..ggegvdvvfecvG.....sga.tleaal 76 
                 Gl a++ A+ lGa v a d+ +   e++++lGa++v  +                 +  ++ ++ ++l   + +++d+v+ ++      +++   ++a+
  CCG92161.1 180 GLQAIATARRLGALVEAYDIRPVAKEQVESLGAKFVNLPitaqdvedrsgyakaqsE--EFYSKQRQLIieQCKKADIVITTALvpgvkAPKlIAKEAV 276
                 889*********************************999777665555544443321..2333333332443457777776643111221221345666 PP

                 HCEEEEEEEEECSC CS
  ADH_zinc_N  77 kllkpgGrlvvvGg 90 
                 +++kpg  +v  ++
  CCG92161.1 277 EMMKPGSVIVDLAA 290
                 66666666666666 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.1e-05     0.039       1      28 [.     170     197 ..     170     266 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.1e-05
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi 28 
                 +v ViG+G AG+ A ++a rlGa v  +
  CCG92161.1 170 KVFVIGAGVAGLQAIATARRLGALVEAY 197
                 699*******************998766 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.23   4.2e+02     254     293 ..     106     145 ..     101     160 .. 0.77
   2 ?    9.9   0.0   0.00015      0.27       2      48 ..     170     216 ..     169     256 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.23
                  .....-TT--EEEECSTTS-...HHHHHHHHHHHTTTSBH CS
  HI0933_like 254 kalekkeeetleidllPdldaeelkaalekekekeskksl 293
                  k+l++++ + +++dl+P +++++  + l+++ + +  k+l
   CCG92161.1 106 KELAAQKLTVFSLDLIPRISRAQSMDPLSSQSTVSGYKAL 145
                  67788899999*********99999999998877766665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00015
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-E CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKilisGgGrcN 48 
                  +v viG+G AGl a ++a++ g+ V  ++  + + + +   G   +N
   CCG92161.1 170 KVFVIGAGVAGLQAIATARRLGALVEAYDIRPVAKEQVESLGAKFVN 216
                  799*******************9999998777666666666655555 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   0.00011       0.2       1      29 [.     173     201 ..     173     203 .. 0.94
   2 ?   -2.9   0.0       4.6   8.3e+03      24      40 ..     285     301 ..     283     331 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    ++GaG++Gl a +++++ g+ v+ ++ r+
     CCG92161.1 173 VIGAGVAGLQAIATARRLGALVEAYDIRP 201
                    8************************9986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.6
                    EE-SSSSSSGGG-EECE CS
  NAD_binding_8  24 llekrdrlGGraasyev 40 
                    +++ +   GG++     
     CCG92161.1 285 IVDLAAEQGGNCELTVP 301
                    66677777888864433 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00019      0.34      41     116 ..     188     286 ..     170     303 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00019
  Methyltransf_23  41 rengfsvtgvDlspeaveiae.......................kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkp 111
                      r+ g+ v+++D++p+a e +e                       ka+  ++ + ++q + e+ +k d+++ + +   v+ p    + + +++kp
       CCG92161.1 188 RRLGALVEAYDIRPVAKEQVEslgakfvnlpitaqdvedrsgyaKAQSEEFYSKQRQLIIEQCKKADIVITTALVPGVKAPKLIAKEAVEMMKP 281
                      55577899************9**99999988888888776633333333333333334444666****************************** PP

  Methyltransf_23 112 gGyll 116
                      g +++
       CCG92161.1 282 GSVIV 286
                      *9886 PP

>> Glyco_hydro81C  Glycosyl hydrolase family 81 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00017       0.3      18      84 ..      32      98 ..      20     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00017
  Glyco_hydro81C 18 lkqdlsaesnldsmYfsGKalakfatlvyvvkellkdeelakaalkkLkealerflenkqklplvYd 84
                    l+  +++ + +++ Yf     +k a ++ +++e+lk+++++  +    ke +++f+en+   +l+Y 
      CCG92161.1 32 LQVCVESGAGINAGYFDEMYEDKGAKILPTAHEVLKNAHIVCLIHPPRKEDIAHFVENSMLISLLYP 98
                    55556677889999**************************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2424.02
//
Query:       CCG92162.1  [L=178]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1398.86
//
Query:       CCG92163.1  [L=557]
Description: Glucoamylase or related glycosyl hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-61  206.6   0.0      2e-60  204.9   0.0    1.7  1  Glyco_hydro_15  Glycosyl hydrolases family 15


Domain annotation for each model (and alignments):
>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.9   0.0   1.1e-64     2e-60       4     388 ..     170     520 ..     167     546 .. 0.96

  Alignments for each domain:
  == domain 1  score: 204.9 bits;  conditional E-value: 1.1e-64
                     HHHHHHCBCSTTSSBTTS-TT-B-S-S-BSSS.........B--SEEHHHHHHHHHHHH.......HHHHHTTT-HCCHHHHHH..HHHHHHHHC CS
  Glyco_hydro_15   4 ldlylrnvktlilleqnpvtGlliASpstsdp.........DYrytWvRDsvyvilavwglgyrdedrakayeleqslvklmrg..lleamvrqa 87 
                     +++++r++ tl+ll+ +p tG++iA+p+ts+p         DYr+ W+RDs+++i a+++lg+ +e++ +++ l++  +  +r+   l++m+ ++
      CCG92163.1 170 REMVYRSALTLKLLTFKP-TGAIIAAPTTSLPeeiggirnwDYRFSWIRDSAFTIYAFMRLGFTEEAQNYMEFLSKVYRGFSRKnpPLQIMYGID 263
                     789***************.***********************************************************999998668******** PP

                     TS-BTTB-TTSCGGGG--EE-TTS-B--S-..-S--BTTHHHHHHHHHHHHHCTTHCHCCCCHHHHTHHHHHHHHHHHTTS-EE-TTS--ECEEH CS
  Glyco_hydro_15  88 gkvekfketqstkgLhakyftktgstvvGddewghlQlDatslyllalaqmtasglqiistldevafvqnlvdYieaayktpdfglWEenqgese 182
                     g+  ++ke +++   h+ +++++ +++vG+ ++++lQlD++++ l a++   + g  i+++ +    v+ l+++++++++  d+g+WE+++ +++
      CCG92163.1 264 GR-HELKEMELN---HLDGYKGSRPVRVGNGAYQQLQLDIYGELLDAVYLCNKYGAPISFEEWLE--VKHLIEWVCENWQLEDEGIWEVRGKKRH 352
                     *9.889999***...**************************************************..**************************** PP

                     H..HHHHHHHHHHHHHHHHHHCT-HHHHCCHHHHHHHHHHHHHSTTT..GGGEETTCCECECSCH.....HHHTTS--S-BCHHHHHHHHCS-TT CS
  Glyco_hydro_15 183 lnassvgmakAlleaideadlfgakgdaqlvektkdeilnklqgkygckrgfwplfntylildgsfaedkeqvqeyrealdasllllpelyfvpa 277
                     + +s+++ ++Al++++++a++    +d + ++k ++ei+  +     +++g   ++  +++  gs            ealdas+l +p + f+++
      CCG92163.1 353 FIYSKLMCWVALDRGLRLAEKRSFPADISRWRKIRNEIYMFI-----MEKGWNAKKKAFVQSSGS------------EALDASILMMPLVFFISP 430
                     ******************************************.....******************............****************** PP

                     S-TT-TT-TTTSHHHHHHHHHHHHHHHHHSGGGTT-STTS--SBTT--CGSSSBSCT--BHHHHHHHHHHHHHHHHHHHHHTE-EEEECCCHHHH CS
  Glyco_hydro_15 278 ddvdeeyqnpqsprllaqslyildsllsegflavgeldplvrRysedvkpdklglsGrpyylctlwtvetlldelyekagkgrlwglvryalgll 372
                      d          p +l+++++i++s  + g+la++     v+Ry+  + +d+l+++++ + +ct+w     l e++++ag+ r  +l+++a  l+
      CCG92163.1 431 VD----------PMMLSTLQAIMRSSHEGGLLANNL----VYRYNLRKTDDGLEGKEGTFNICTFW-----LVEALTRAGQYR-PQLLEEAHLLF 505
                     **..........**********************96....**************************.....**********99.*********** PP

                     HHHTTTTTGGGSSEEE CS
  Glyco_hydro_15 373 eklveskqltvGlppe 388
                     e++    +  vGl++e
      CCG92163.1 506 ERMLGF-ANHVGLYAE 520
                     ***999.788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.36
# Mc/sec: 4623.97
//
Query:       CCG92164.1  [L=265]
Description: Methylase involved in ubiquinone/menaquinone biosynthesis [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-21   77.3   0.0    2.2e-21   76.3   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    5.8e-20   71.6   0.0    8.5e-20   71.1   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    2.3e-19   69.8   0.0    3.2e-19   69.4   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    2.3e-19   69.9   0.0    4.1e-19   69.1   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    8.9e-19   68.0   0.0    1.8e-18   67.0   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    4.4e-09   36.0   0.0    6.5e-09   35.5   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    7.1e-08   32.2   0.0      1e-07   31.7   0.0    1.2  1  MTS              Methyltransferase small domain
    8.6e-06   25.5   0.0    1.9e-05   24.3   0.0    1.5  1  MetW             Methionine biosynthesis protein MetW
    1.3e-05   24.7   0.0    1.8e-05   24.3   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    1.4e-05   25.0   0.0    5.5e-05   23.0   0.0    2.1  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      2e-05   24.0   0.0      3e-05   23.4   0.0    1.2  1  Methyltransf_2   O-methyltransferase domain
    3.8e-05   23.5   0.1      0.033   13.9   0.0    2.2  2  N6_N4_Mtase      DNA methylase
    0.00052   19.3   0.5     0.0021   17.3   0.1    1.9  2  N2227            N2227-like protein
    0.00066   19.2   0.0     0.0071   15.8   0.0    2.1  1  Methyltransf_4   Putative methyltransferase
    0.00073   19.2   0.0      0.001   18.7   0.0    1.2  1  NodS             Nodulation protein S (NodS)
    0.00092   18.6   0.0     0.0017   17.7   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
    0.00098   18.6   0.0     0.0015   18.0   0.0    1.3  1  TehB             Tellurite resistance protein TehB
     0.0024   18.0   0.0     0.0044   17.2   0.0    1.6  1  FtsJ             FtsJ-like methyltransferase
     0.0044   17.0   0.0     0.0075   16.3   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
  ------ inclusion threshold ------
      0.016   15.1   0.0        3.7    7.3   0.0    2.3  2  Methyltransf_8   Hypothetical methyltransferase
      0.016   14.8   0.0      0.036   13.7   0.0    1.6  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
      0.022   13.3   0.0      0.031   12.8   0.0    1.1  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
      0.049   12.7   0.0      0.098   11.7   0.0    1.4  1  RrnaAD           Ribosomal RNA adenine dimethylase
      0.061   12.5   0.0       0.61    9.2   0.0    2.1  2  DUF3419          Protein of unknown function (DUF3419)
      0.071   12.6   0.0        1.8    8.0   0.0    2.1  2  Methyltransf_5   MraW methylase family
      0.085   13.9   0.0       0.17   12.9   0.0    1.5  1  Methyltransf_24  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   3.1e-24   2.2e-21       1      94 [.      43     136 ..      43     138 .. 0.92

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 3.1e-24
                      EEET-TTSHHHHHHH..HTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaeala..krgarvvgvDlskemlklakekaseeglkvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+GcGtGrl++++    rg++++g+D+ ++ +k+akek  ++ +   f v+   +l  f++nsfD++++++v+h++e+ ++al++i+R+Lkpg
       CCG92164.1  43 LDIGCGTGRLTQYISelLRGGKIIGIDPLPYRIKIAKEKETKNLF---FEVGGTLDLhRFQENSFDCILLNSVFHWIENKAEALEQIKRILKPG 133
                      8**************55555****************999999864...78899999978*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCG92164.1 134 GRV 136
                      *86 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   1.2e-22   8.5e-20       4     123 ..      39     154 ..      36     191 .. 0.82

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 1.2e-22
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileei 97 
                         vlD+GCGtG+lt  +  el  +++++GiD  +  i+ A+e    ++ +n+ Fe+g   +l   +++++fD il n+v++ + +++++le+i
       CCG92164.1  39 SDFVLDIGCGTGRLTQYIS-ELLRGGKIIGIDPLPYRIKIAKE----KETKNLFFEVGGTLDLHR-FQENSFDCILLNSVFHWIENKAEALEQI 126
                      5569***************.88889******************....5788999********887.999************************* PP

  Methyltransf_31  98 ervlkpggilliedpr.....llaelpakve 123
                      +r lkpgg++ i++ +     + +el    e
       CCG92164.1 127 KRILKPGGRVGISTGDknyktTIRELV---E 154
                      ****************44333333332...2 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   4.6e-22   3.2e-19      21     163 ..      37     191 ..      18     193 .. 0.75

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 4.6e-22
  Methyltransf_23  21 raggrvLdiGcGtGillevlren..gfsvtgvDlspeaveiae............kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppe 100
                      +++  vLdiGcGtG+l+++++e   g +++g+D+ p  ++ia+            ++          +  ++++++fd+I l+ v++++++ +e
       CCG92164.1  37 KSSDFVLDIGCGTGRLTQYISELlrGGKIIGIDPLPYRIKIAKeketknlffevgGT---------LDLHRFQENSFDCILLNSVFHWIENKAE 121
                      556669**************8853277**************9665543333332222.........225555779******************* PP

  Methyltransf_23 101 llrqiatllkpgGylllseplasl.........kedrllldwlylvpagrhi...sffsarslkelleeaGlevv 163
                      +l qi+++lkpgG++ +s+ +++          ++ r++ ++++++     +    + s++++k l +++Gl + 
       CCG92164.1 122 ALEQIKRILKPGGRVGISTGDKNYkttirelveQSVRKYVKNAFEF-----SfspFLLSSEEIKSLINKSGLHIE 191
                      *******************999885544443322333333333333.....333477899***********9885 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0     6e-22   4.1e-19       1      99 []      43     136 ..      43     136 .. 0.91

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 6e-22
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L+iGcGtG+l++++ e l++ +++g+D+ p  i     k+ak+++ +n ++e+  + +l +++++sfD +++++v+h++++++e+l++i++ Lk
       CCG92164.1  43 LDIGCGTGRLTQYISELLRGGKIIGIDPLPYRI-----KIAKEKETKNLFFEVGGTLDLHRFQENSFDCILLNSVFHWIENKAEALEQIKRILK 131
                      8********************************.....666666666778888888888888889***************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgGr+
       CCG92164.1 132 PGGRV 136
                      ***85 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   2.6e-21   1.8e-18       1      97 []      42     134 ..      42     134 .. 0.92

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 2.6e-21
                      EEEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS.SSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeeglnvefvqgdaedlp.fedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      vLd+GcGtGrlt+++++ l g +k++g+D+ +  +++a+e+      n+ f++g   dl+ f+++sfD+++++ ++h+++  + ++al++i+r+
       CCG92164.1  42 VLDIGCGTGRLTQYISELLrG-GKIIGIDPLPYRIKIAKEKET---KNLFFEVGGTLDLHrFQENSFDCILLNSVFHWIE--NKAEALEQIKRI 129
                      9*****************955.******************994...48**********9769**********76699998..5569******** PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      LkpgG
       CCG92164.1 130 LKPGG 134
                      ****9 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   9.5e-12   6.5e-09      41     151 ..      32     138 ..      18     194 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 9.5e-12
                      HH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-.TTS-T-EEEEEEES-GGG-S-HH CS
  Ubie_methyltran  41 klvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeL.pfeddsfDvvtvsfGlrnvtDkl 133
                      ++   k++  vlD+ +Gtg l+  +s+ ++  gk++++D  +  +k++++k  ++    + f ++ + +L  f+++sfD++ +   +  + +k 
       CCG92164.1  32 NMLKIKSSDFVLDIGCGTGRLTQYISELLR-GGKIIGIDPLPYRIKIAKEKETKN----LFFEVGGTLDLhRFQENSFDCILLNSVFHWIENKA 120
                      45556777889**************99886.69*************999887655....5555677777736999******************* PP

                      HHHHHHHHHEEEEEEEEE CS
  Ubie_methyltran 134 kaLkeayrvlkpGGrlvv 151
                      +aL+++ r+lkpGGr+ +
       CCG92164.1 121 EALEQIKRILKPGGRVGI 138
                      ***************976 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.5e-10     1e-07      21     156 ..      28     156 ..      11     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.5e-10
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHH CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsNPPfhagkatelavae 119
                 k+L++ l+ + s+ vlD+GcG+G l+  + +     ++  +d   + +++ake  ++n +  ev  +  l+ ++e++fd+i+ N  fh  ++       
  CCG92164.1  28 KVLINMLKIKSSDFVLDIGCGTGRLTQYISELLRGGKIIGIDPLPYRIKIAKEKETKNLF-FEVGGTLDLHRFQENSFDCILLNSVFHWIEN-----KA 120
                 799******99999***************************************9999887.66666666677778*************9888.....45 PP

                 HHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS-- CS
         MTS 120 eliaeAkeaLkegGeLliVanrklgyeslleelfgnv 156
                 e +++ k++Lk+gG+  i      +y+++++el+++ 
  CCG92164.1 121 EALEQIKRILKPGGRVGI-STGDKNYKTTIRELVEQS 156
                 6678889*******9876.556668888888877754 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.8e-08   1.9e-05      11     102 ..      36     130 ..      27     141 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.8e-08
        MetW  11 ikpgsrvldlGcGdGellellkee.kqvdgrGleldeegvaecvakGlsviqgdl..dkdlenfedksfdyvvlsqtlqatrnpkevldellrig 102
                 ik+   vld+GcG G l +++ e  ++ +  G++     ++ + +k  + +  ++    dl+ f+++sfd ++l+  +  + n +e l+++ ri 
  CCG92164.1  36 IKSSDFVLDIGCGTGRLTQYISELlRGGKIIGIDPLPYRIKIAKEKETKNLFFEVggTLDLHRFQENSFDCILLNSVFHWIENKAEALEQIKRIL 130
                 455557************999874255566677777777777777766654444411678999***************************99985 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.6e-08   1.8e-05     159     260 ..      36     140 ..      28     170 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.6e-08
        PrmA 159 vkegeevlDvGtGSGiLai.aaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellkeekadvivaNILaevlie...laedikklvkeg 253
                 +k+ + vlD+G+G+G L+   + +L   k++++D  +  +k+ake  ++N   +   + l  + ++e+++d i+ N + + + +    +e+ik+++k+g
  CCG92164.1  36 IKSSDFVLDIGCGTGRLTQyISELLRGGKIIGIDPLPYRIKIAKEKETKNLFFEVGGT-LDLHRFQENSFDCILLNSVFHWIENkaeALEQIKRILKPG 133
                 567789**********985156778999**********************87764432.4445555699************97522267899******* PP

        PrmA 254 gllilSG 260
                 g++ +S 
  CCG92164.1 134 GRVGIST 140
                 **99985 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   7.9e-08   5.5e-05      58     131 ..      22      91 ..       8     176 .. 0.69
   2 ?   -1.8   0.0       3.2   2.2e+03     156     188 ..     205     240 ..     201     262 .. 0.59

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 7.9e-08
                 -HHHHHH.HHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES CS
        PCMT  58 aphmval.alellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvg 131
                 +   +++ ++++l++k  + vL++G+G+G lt  +++l++  g++++i+  +  ++ ak++    +++n+ + vg
  CCG92164.1  22 SQFFHGKvLINMLKIKSSDFVLDIGCGTGRLTQYISELLR-GGKIIGIDPLPYRIKIAKEK----ETKNLFFEVG 91 
                 445555415799*************************997.588*****999877777653....4445555555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.2
                 -HHHHHTEEEE..EEEE..EEESBSSSEEEEEEEEET CS
        PCMT 156 PealidQLkeG..Grlv..vPvgeeeeQvlklvdkka 188
                 Peali+ L++   G ++  +P++ +++Q l  ++++ 
  CCG92164.1 205 PEALITFLESSsfGNFLsqIPLE-HKSQILADIKRDL 240
                 56666666543224444224554.6666666666554 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   4.3e-08     3e-05      42     162 ..      18     136 ..       6     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 4.3e-08
                     HHHTTHHHHHHHHHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE.-HHHHHHHHHHS-----TTEEEEES-TTTS---..--SEEEE CS
  Methyltransf_2  42 glqessslvakkvleafdleglkslvDvGGGtGalakaivsayPtikvivfD.lpeVveaAkehlsageeervefvgGdffkdslP..eaDaill 133
                      +++s+   +k +++  ++++   ++D+G GtG l + i+++  + k+i  D lp  ++ Ake+   ++++ +  vgG +  ++    + D ill
      CCG92164.1  18 KFSDSQFFHGKVLINMLKIKSSDFVLDIGCGTGRLTQYISELLRGGKIIGIDpLPYRIKIAKEK---ETKNLFFEVGGTLDLHRFQenSFDCILL 109
                     456777888899999999*********************************99**********9...45555555777554444442278***** PP

                     ESSGGGS-HHHHHHHHHHHHHH--TT-EE CS
  Methyltransf_2 134 krvlhDwsdekcvklLkrvkkalpagGkv 162
                     ++v h w ++k  + L+++k+ l++gG+v
      CCG92164.1 110 NSVFH-WIENKA-EALEQIKRILKPGGRV 136
                     **988.887775.568************9 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0033       2.3     184     231 .]      30      80 ..      28      80 .. 0.82
   2 !   13.9   0.0   4.9e-05     0.033      28      81 ..     112     164 ..      96     245 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0033
                  HHHHHS-T.T-EEEETT-TTTHHHHHHHHT..T-EEEEEESSHHHHHHHHH CS
  N6_N4_Mtase 184 lIklstkk.gdivlDpFaGSGtTavaakel..grkfiGieieeeyvelaek 231
                  lI+++  k  d vlD  +G+G   ++  el  g k iGi+  ++++++a++
   CCG92164.1  30 LINMLKIKsSDFVLDIGCGTGRLTQYISELlrGGKIIGIDPLPYRIKIAKE 80 
                  6666655559****************999944457*****99999999985 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 4.9e-05
                  HHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCCHHTHHHHHHHHHTT-EEEEEE CS
  N6_N4_Mtase  28 yeeyleflekvlkevrrvLkddgsifiniddseikkelkaladeifggffllnv 81 
                  +  ++e   + l++++r+Lk++g + i+ +d+++k ++ +l++++    +++n 
   CCG92164.1 112 VFHWIENKAEALEQIKRILKPGGRVGISTGDKNYKTTIRELVEQSVR-KYVKNA 164
                  56799999***************************977777777766.666654 PP

>> N2227  N2227-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.71   4.9e+02      62      77 ..      43      58 ..      29      70 .. 0.81
   2 !   17.3   0.1     3e-06    0.0021     141     243 ..      80     195 ..      71     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.71
                EEET-TT-HHHHHHHH CS
       N2227 62 lvPGaGlGrlavelat 77
                l  G+G+Grl+  +++
  CCG92164.1 43 LDIGCGTGRLTQYISE 58
                5569******987765 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 3e-06
                 -TTS--EEEEES-HHHHH--SSHTT-EEEEEEES-TTSSS-HHHHHHHHHHHEEEEE.EEEEEE----TTT........TTTSEEEEE........... CS
       N2227 141 lkrkknlsmaagdflevykeeeaaesydvvvtcfFiDtaeNvleYletiekvlkpgg.lwiNlGPLlYhfe........dltvadevs........... 219
                  k++knl   +g  l++   +  ++s+d+++ +      eN  e le i+++lkpgg + i  G   Y +                 +           
  CCG92164.1  80 EKETKNLFFEVGGTLDLHRFQ--ENSFDCILLNSVFHWIENKAEALEQIKRILKPGGrVGISTGDKNYKTTirelveqsV-------Rkyvknafefsf 169
                 556667777777777777766..9*********8888999*****************999**********9776665540.......344445555778 PP

                 ..----HHHHHHHHHHS-EEEEEEEE CS
       N2227 220 ..ielsleeilalakkvgfkvlkeek 243
                   + ls+eei++l++k g ++++ + 
  CCG92164.1 170 spFLLSSEEIKSLINKSGLHIEQFRL 195
                 8999***************9999876 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     1e-05    0.0071       4     133 ..      41     156 ..      38     178 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1e-05
                     EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS-TTSEEEEEEES-----SGGGGGGSTTSHH CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllelledgslekifilFPDPwfKkrhhKrRllqpe 98 
                      vl+iGcG G+++  +++     +++Gi+    +    +k ++++e kNl    g  l+  l+ ++++s++ i ++    w++++         e
      CCG92164.1  41 FVLDIGCGTGRLTQYISELLRGGKIIGIDPLPYR----IKIAKEKETKNLFFEVGGTLD--LHRFQENSFDCILLNSVFHWIENKA--------E 121
                     589*************************976655....567788999**9988888654..479999*********9999**9987........9 PP

                     HHHHHHHHEEEEEEEEEEESHHHHHHHHHHHHHCS CS
  Methyltransf_4  99 llkelarvLkkgGvlelaTDveeyaeemlkvleee 133
                      l++++r+Lk+gG + + T +++y   + + +e+ 
      CCG92164.1 122 ALEQIKRILKPGGRVGISTGDKNYKTTIRELVEQS 156
                     9************************9999988876 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.5e-06     0.001      43     141 ..      38     135 ..      11     147 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.5e-06
        NodS  43 siadalevGcaaGalterlapyck..rltvvdvveeaiararervkes.shiswivsdvqqfstdekfdlivvaevlyyiedvaelraavrnlvsllap 138
                 s   +l++Gc +G lt+ ++ + +  ++  +d ++  i+ a+e+  +        + d+++f+  + fd i+   v+++ie++ae   a++ + ++l+p
  CCG92164.1  38 SSDFVLDIGCGTGRLTQYISELLRggKIIGIDPLPYRIKIAKEKETKNlFFEVGGTLDLHRFQE-NSFDCILLNSVFHWIENKAE---ALEQIKRILKP 132
                 44458***************98762266667889999999988755530333345789999975.58***************987...88888899999 PP

        NodS 139 dgq 141
                 +g+
  CCG92164.1 133 GGR 135
                 886 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.4e-06    0.0017      45     218 ..      21     196 ..      13     202 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHH.HHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGTS CS
        CMAS  45 eAqlaKldlileklelkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklak.krvdeldlerkvevklldyedldekvdrvvsvgafehvg 141
                 + q    +++++ l++k  + +LdiGcG G l+++  e   + k++g+     + k ak k+ ++l +e   +++l  +++  + +d +    +f  + 
  CCG92164.1  21 DSQFFHGKVLINMLKIKSSDFVLDIGCGTGRLTQYISELLrGGKIIGIDPLPYRIKIAKeKETKNLFFEVGGTLDLHRFQE--NSFDCILLNSVFHWI- 116
                 566777788999*********************99888643899***9866666666651456666666666666666654..589999988888877. PP

                 GGGHHHHHHHHHHHS-TT-EEEEEEEEE--HHHHHCTTCCC..HHHHHHT.ST.TS---BHHHHHHHHHHTT-EEEEEEE- CS
        CMAS 142 kenydtffkklkkllkedGllllhtitslhkkelaerglkl..kfidkei.FP.gGelpsieeieeeiseagftvvdvesl 218
                  en ++  +++k++lk++G++ + t  +  k+++ e   ++  k++++   F     l s+eei++ i++ g+++++++ +
  CCG92164.1 117 -ENKAEALEQIKRILKPGGRVGISTGDKNYKTTIRELVEQSvrKYVKNAFeFSfSPFLLSSEEIKSLINKSGLHIEQFRLF 196
                 .45567789999999999999998877666666555444434466655432221445778888888888888888887655 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.2e-06    0.0015      15     129 ..      22     135 ..      10     151 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.2e-06
                 -----HHH.HHHCCCS-S-EEEEES-TTSHHHHHHH..HTT-EEEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG----S-EEEEEEESSGGGS-G CS
        TehB  15 ltathsev.veavkivkpgkvldlgcgqgrnslyls..llgydvtawdknensiafleeikekenlknistalydineaklderydfilstvvlmflea 110
                     h++v ++  ki +   vld+gcg gr + y+s  l g ++  +d     i+  +e ke +nl      ++d+   + ++ +d il   v+ ++e+
  CCG92164.1  22 SQFFHGKVlINMLKIKSSDFVLDIGCGTGRLTQYISelLRGGKIIGIDPLPYRIKIAKE-KETKNLFFEVGGTLDLHRFQ-ENSFDCILLNSVFHWIEN 118
                 55578887347778888889***************95567999******9999987665.55556654445566776544.5569*********99998 PP

                 GGHHHHHHHHHHTEEEEEE CS
        TehB 111 eripsiienmqectkvggy 129
                 ++  + +e++++  k+gg 
  CCG92164.1 119 KA--EALEQIKRILKPGGR 135
                 74..667888888888885 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.3e-06    0.0044      24      57 ..      34      73 ..      10     166 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.3e-06
                E.......EEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS CS
        FtsJ 24 t.......vvDlgaaPGgwsqvllqrlgakgkvvavDlqpm 57
                        v+D+g+++G  +q++++ l  +gk++++D  p+
  CCG92164.1 34 LkikssdfVLDIGCGTGRLTQYISELLR-GGKIIGIDPLPY 73
                03344444******************97.5*******9887 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.1e-05    0.0075      21      70 ..      34      81 ..      23     102 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.1e-05
  Methyltransf_32 21 akesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekr 70
                      k +++ +v+D+G+G g L++ ++      + k++gid    +++ a++ 
       CCG92164.1 34 LKIKSSDFVLDIGCGTGRLTQYISE--LLRGGKIIGIDPLPYRIKIAKEK 81
                     45577899****************9..448********877777766655 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0054       3.7      62      93 ..      29      59 ..      26      78 .. 0.79
   2 ?    5.6   0.0     0.018        13     134     157 ..     116     139 ..      96     170 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0054
                    HHHHHHCTS-TTS-EEEES-TT-HHHHH--S- CS
  Methyltransf_8 62 viirklkkkkdnlvvadlGcGeakiaeavrek 93
                    v+i+ lk k +   v d+GcG  ++++ ++e 
      CCG92164.1 29 VLINMLKIKSS-DFVLDIGCGTGRLTQYISEL 59
                    56777776655.5678*********9888775 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.018
                     SS-HHHHHHHHHHHEEEEEEEEEE CS
  Methyltransf_8 134 gtnladflkeanrvlkvGGllkva 157
                      +n a+ l++++r+lk+GG + ++
      CCG92164.1 116 IENKAEALEQIKRILKPGGRVGIS 139
                     5788999************98876 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.2e-05     0.036       3      52 ..      33      81 ..      31     113 .. 0.76
   2 ?   -2.4   0.0       4.5   3.1e+03     116     138 ..     118     140 ..     110     159 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.2e-05
                     HH---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHH CS
  Methyltr_RsmB-F  3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaen 52
                     +L+ +  +++lD+ ++ G  T +i+el    g+++ +d    R+k  +e 
       CCG92164.1 33 MLKIKSSDFVLDIGCGTGRLTQYISEL-LRGGKIIGIDPLPYRIKIAKEK 81
                     79999**********************.67899********999977654 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.5
                      HHHHHHHHHCCCEEEEEEEEEEE CS
  Methyltr_RsmB-F 116 lqkellsaaidllkkgGvlvYsT 138
                       + e l+ +   lk+gG +  sT
       CCG92164.1 118 NKAEALEQIKRILKPGGRVGIST 140
                      55666677777777777665555 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.5e-05     0.031     114     223 ..      35     144 ..      22     165 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.5e-05
  Methyltransf_29 114 aggkvrtvlDvGCgvasfgayllsrdvltlslapkDeheaqvqfaLeRgvpai.lavlgtkrl.pyPsrsfdlihCsrCridwteedgilllev 205
                      + ++   vlD+GCg   ++ y+ s+ +    +   D    ++++a e+    +   v gt  l  +  +sfd i       +w e+++  l  +
       CCG92164.1  35 KIKSSDFVLDIGCGTGRLTQYI-SELLRGGKIIGIDPLPYRIKIAKEKETKNLfFEVGGTLDLhRFQENSFDCILLN-SVFHWIENKAEALEQI 126
                      44677889******99998876.44455666667788999********998861567778888459******99875.578************* PP

  Methyltransf_29 206 dRvlRpgGyfvlsappvy 223
                      +R+l+pgG   +s+ + +
       CCG92164.1 127 KRILKPGGRVGISTGDKN 144
                      ********8877765544 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014     0.098      23      53 ..      31      61 ..      15      70 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
                HHHH-GGTTSEEEEES-TTTCCHHHHHCC-S CS
      RrnaAD 23 ldklnleekltvleigpGkGilTeeLakrak 53
                ++ l+++ ++ vl+ig G+G lT+ + + ++
  CCG92164.1 31 INMLKIKSSDFVLDIGCGTGRLTQYISELLR 61
                5678999*****************9988775 PP

>> DUF3419  Protein of unknown function (DUF3419)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.25   1.7e+02      21      59 ..      29      69 ..      27      84 .. 0.82
   2 ?    9.2   0.0   0.00089      0.61     289     337 ..      96     142 ..      74     168 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.25
     DUF3419 21 vdeeaLklepddrvlaItSaGdNaLsYl..laspkrihaVD 59
                v  ++Lk++++d vl I  +  +  +Y+  l +  +i  +D
  CCG92164.1 29 VLINMLKIKSSDFVLDIGCGTGRLTQYIseLLRGGKIIGID 69
                56789***************999999996655667777777 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00089
     DUF3419 289 larlkkksltravllDhmDWledeeleeeiqelnralkpggrvllRsaa 337
                 l+r +++s++ + l   + W+  e+ +e +++++r lkpggrv + +  
  CCG92164.1  96 LHRFQENSFDCILLNSVFHWI--ENKAEALEQIKRILKPGGRVGISTGD 142
                 78999****************..77778899************776655 PP

>> Methyltransf_5  MraW methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0026       1.8      12      63 ..      30      81 ..      23     102 .. 0.90
   2 ?    2.4   0.0      0.13        90     219     258 ..     119     154 ..     106     167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0026
                    HHHHT---TT-EEEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT. CS
  Methyltransf_5 12 vvellepkedgvyiDaTlGaggHsealLeqlselrligidrDksalaraker 63
                    ++++l++k+  + +D   G+g  ++++ e l+  ++igid  +  +++ake+
      CCG92164.1 30 LINMLKIKSSDFVLDIGCGTGRLTQYISELLRGGKIIGIDPLPYRIKIAKEK 81
                    5899******************************************999984 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.13
                     HHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTT- CS
  Methyltransf_5 219 leelleaalellakggrlavisFhSledrivkkvfkeask 258
                       e+le++ ++l++ggr+ +    S  d+  k++++e+ +
      CCG92164.1 119 KAEALEQIKRILKPGGRVGI----STGDKNYKTTIRELVE 154
                     5689**************98....7788888888888776 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00025      0.17       2     101 ..      44     136 ..      43     138 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00025
  Methyltransf_24   2 EiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalareaglddrvrlikadseealaslaagsiDllfiDg.ghaaeavledleallpr 94 
                       iG+  G+ t+++ ++lr     +++ +d+ p      ++a+e++ ++ +  + ++++  l+++++ s+D++++    h  e  +e+le + ++
       CCG92164.1  44 DIGCGTGRLTQYISELLRGG---KIIGIDPLP---YRIKIAKEKETKNLFFEVGGTLD--LHRFQENSFDCILLNSvFHWIENKAEALEQIKRI 129
                      69999*********999854...59*******...88899999888888777777665..6789999*******9856888************* PP

  Methyltransf_24  95 lapggvv 101
                      l+pgg v
       CCG92164.1 130 LKPGGRV 136
                      ****966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 1810.63
//
Query:       CCG92165.1  [L=713]
Description: Glycogen operon protein glgX homolog [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-21   75.6   0.1    4.3e-20   71.9   0.0    2.8  3  CBM_48         Carbohydrate-binding module 48 (Isoamylase N-t
    9.3e-16   58.3   0.0      8e-07   28.9   0.0    2.2  2  Alpha-amylase  Alpha amylase, catalytic domain


Domain annotation for each model (and alignments):
>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   4.8e-24   4.3e-20       1      84 []      16     102 ..      16     102 .. 0.92
   2 ?   -1.4   0.0      0.34     3e+03      35      59 ..     474     502 ..     467     515 .. 0.66
   3 ?   -1.2   0.0      0.29   2.6e+03      27      56 ..     650     680 ..     648     699 .. 0.73

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 4.8e-24
                 TSEEEEESSCEEEEEEEE-TTSSEEEEEECGTTTEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEETT....S....CEEEE--TT- CS
      CBM_48   1 plGahvsedekgvnfrvwapnAekVslvldfnnwdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgps....g....ekklllDPya 84 
                 plGa+++++  gvnf++++++A+kV+l+l++   ++++ip + + t+++W++++p  l++g ++Y+yrv+gp+    g    + klllDPya
  CCG92165.1  16 PLGATWDGQ--GVNFALYSEHATKVELCLFDSAGKETKIPIT-DCTDYIWTVYIP-SLSPG-QLYGYRVHGPYepqaGhrfnPHKLLLDPYA 102
                 7*****988..**********************99*******.7***********.55558.6**********888846777*********8 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.34
                 EEECCB-EE....ECGGCEEEEEEETTST CS
      CBM_48  35 daeeiplkr....rrtggvWelflpgdlp 59 
                 +++e +l++    +++++ W + ++g  +
  CCG92165.1 474 KHNEANLEEnrdgNNDNNSWNCGIEGPTD 502
                 34455555444678899999999998555 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.29
                 EEECGTT.TEEECCB-EEECGGCEEEEEEET CS
      CBM_48  27 lvldfnn.wdaeeiplkrrrtggvWelflpg 56 
                 +++ fn+ ++   ++l  rr++  W+ +++ 
  CCG92165.1 650 ILICFNGsENDIVFKLPTRRNNRSWTRVIDT 680
                 667777778888899999999****999986 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0     9e-11     8e-07      10      81 ..     198     286 ..     187     303 .. 0.83
   2 !   27.0   0.0   3.5e-10   3.1e-06     144     333 ..     323     540 ..     308     545 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 9e-11
                    CCCCCCCT-SCEEE-B-CE..........-S-TTTTSS-SCECCE-CCC--CC.......CCCCHHHHHHCTT-EEEEEE--SC--TTS CS
  Alpha-amylase  10 LdYlkeLGvtaiwlsPifk..........spqadhgYdiadytkidpefGtne.......dlkeLiskahekgikvilDlVvNHtsdeh 81 
                    +d l +LG+ta+ l Pi +             ++ gY +  + + d++f   +       ++k++++++h+ gi +ilD+V NHt++ +
     CCG92165.1 198 IDHLLNLGITAVELMPIHQhiseehlirkGLVNYWGYNTISFFAPDQRFVASQtdldpitQFKTMVQALHAAGIEIILDVVYNHTAEGN 286
                    89999********************9998555799*******99999997644222222279***********************9865 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 3.5e-10
                    B-TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCC.........................................HCCHCCHHHHHHH CS
  Alpha-amylase 144 Lnteneevrkelkdvvkfwlekg.idGfRlDvvkhvskveal.........................................esngeflheftqa 197
                    +n++n+ v + + d +++w+e+  +dGfR D ++ ++ +                                             + +e+   ++ +
     CCG92165.1 323 FNMQNPRVIQLIMDSLRYWVETMgVDGFRFDLASALAREL-YevdklstffdailqdpilsqvkliaepwdvgdggyqvgnfpVRWAEWNGRYRDD 417
                    799******************988*********9999933.258999*****************************99866555555555566666 PP

                    HHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTCEEES--TTS--HH CS
  Alpha-amylase 198 lnetvasrkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeeavtflgnHDqeRil 293
                    + ++   + ++ t+ E+ +       +y + +r+ +    ++ ++  + ++    +l s++ k+ ++ l+++++  +++++++  + g  D + il
     CCG92165.1 418 VRKF--WKGDLGTLPEFANRLAGSSDLYEQSGRKPYA---SINFVTCHDGFT-LMDLVSYNQKHNEANLEENRDGNNDNNSWNCGIEGPTDDKSIL 507
                    6655..5999**************************9...556666666666.7799999*********************************999 PP

                    HHTTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCCCT--- CS
  Alpha-amylase 294 srlgddsaeaekklklaaillltlrGvpviYyGeEigmtg 333
                        +++       k++++ ll + Gvp+   G+E+g + 
     CCG92165.1 508 ELRTRQR-------KNFLATLLFSIGVPMLLAGDELGHSQ 540
                    9988888.......77777888889************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 5626.37
//
Query:       CCG92166.1  [L=81]
Description: hypothetical protein MFUM_40004 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 650.22
//
Query:       CCG92167.1  [L=77]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 584.70
//
Query:       CCG92168.1  [L=287]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.7e-103  343.7   0.0   6.5e-103  343.5   0.0    1.0  1  DUF692        Protein of unknown function (DUF692)
     0.0059   16.1   0.0      0.021   14.3   0.0    1.8  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> DUF692  Protein of unknown function (DUF692)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.5   0.0  7.3e-107  6.5e-103       1     261 [.      13     273 ..      13     275 .. 0.99

  Alignments for each domain:
  == domain 1  score: 343.5 bits;  conditional E-value: 7.3e-107
      DUF692   1 gvGlglrrelleelleekpevdflEvaaenylkaggkarkelealreryplvlHGvslslGsaepldeehlkrlkallerlepalvSeHlsfssaggve 99 
                 g+G+glr ++++++le+kp v+++Ev++en++++ggk++  l+++ e+y++v+HGv+l  Gs +pld+ehlkrlk+l++++++++vS+Hl++ s++g++
  CCG92168.1  13 GIGIGLRIPHYQHILEKKPGVSWFEVISENFMGNGGKPEILLDKILESYKVVPHGVGLYFGSVDPLDREHLKRLKKLIKKTKTPWVSDHLAWGSVDGTY 111
                 58*************999********************************************************************************* PP

      DUF692 100 lndllPlpyteealavvaerikqvqdiLerplllEnvssylafpeselsEaeFlaelvertgcglllDvnNvyvnavNhgfdpeayldalplervaeiH 198
                 ++dllP+pyt +a + +a++ik++qd+Le+p+ +En+ssy ++++s++ E+eFl+e+ve ++cg+llDvnN+yvn++Nhgfdp  yld++plerv ++H
  CCG92168.1 112 VHDLLPMPYTLAAAKLTAQKIKEAQDFLEVPIGVENISSYAQYRSSKMAEWEFLTEVVETADCGILLDVNNLYVNSQNHGFDPLVYLDHIPLERVIQFH 210
                 *************************************************************************************************** PP

      DUF692 199 lAGheekeelliDtHgapvadevwalleealarlgpvptllErDnnipplaellaelakarai 261
                 +AGh++  ++++DtH++pv+++vw l++e+++r gp+ptllE+D+ ip+++e+++e+ ka+a+
  CCG92168.1 211 IAGHSRLPKYILDTHDQPVSSAVWGLYSEVIRRSGPRPTLLEWDDAIPSFEEVYQEALKAKAF 273
                 ****99999**************************************************9987 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.4e-06     0.021      35     188 ..      56     211 ..      51     231 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-06
                   HHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCC.......GBCTTTSGHH.........HHHHHHHHHHHH CS
  AP_endonuc_2  35 kaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlhpGt.......agagpkgsee.........eawerlaeslne 115
                   k+l+++ +  +++ l+ ++ +p++          +++lkr  +l ++  +p +  h                             +a ++ a++++e
    CCG92168.1  56 KILESYKVVPHGVGLYFGSVDPLD----------REHLKRLKKLIKKTKTPWVSDHLAWgsvdgtyV--------HdllpmpytlAAAKLTAQKIKE 134
                   566666666666666666666654..........455555555555566666555544233333322........1233333335677788899999 PP

                   HHHHHHHHTSEEEEE--TTTTSSSTC..HHHHHHHHHHTTTTEEEEEEHHHHHHH....TTTHHHHHHHH.HGGEEEEEE CS
  AP_endonuc_2 116 ladyaekegvklalEtlagsgvelgd..eelarlldavdspnvgvclDtgHllia....eedvddalral.adrikhvHi 188
                   + d++e   v +++E++ +  ++     +e++ l + v+   +g+ lD+ +l+ +    ++d+   l+++  +r+  +Hi
    CCG92168.1 135 AQDFLE---VPIGVENISSYAQYRSSkmAEWEFLTEVVETADCGILLDVNNLYVNsqnhGFDPLVYLDHIpLERVIQFHI 211
                   999998...************999989888888888888777**************999999998888762455666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2109.76
//
Query:       CCG92169.1  [L=313]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-13   50.8   0.1    3.2e-13   49.7   0.1    1.6  1  DUF2063   Putative DNA-binding domain


Domain annotation for each model (and alignments):
>> DUF2063  Putative DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.1   1.8e-17   3.2e-13       5      85 .]      49     127 ..      20     127 .. 0.92

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.8e-17
                 XXXXXXX.......XXXXXX--HHHHHHHHHHHHHHHHHTTTGGGGS-HHHHHHHHHHHHHSGGGG-S-GGGHHHHHHHHH CS
     DUF2063   5 aFaaallspdadpglsaakrlavYrnlvfnnlieaLaaaFpvlrallGeerfdalarayirahpsrspllreyGeeFpefL 85 
                 a+a+ +++p+   ++++ +rl+vY+++++ ++ ea+ ++F  l  l+G++rf++l++ay+ ++p+rs  l ++G e+ +fL
  CCG92169.1  49 ALAQRIFEPS--RTMTSLERLEVYNQQYWFKMLEAFYQDFSGLSYLIGKRRFRKLVEAYLGKYPPRSARLGDIGSELEAFL 127
                 6677777555..5688889************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2113.19
//
Query:       CCG92170.1  [L=134]
Description: Glutaredoxin family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-16   60.2   0.0    2.9e-16   59.2   0.0    1.5  1  ArsC          ArsC family
    1.4e-09   38.0   0.6    7.6e-08   32.5   0.1    2.2  2  Glutaredoxin  Glutaredoxin
     0.0061   16.9   0.2       0.01   16.2   0.2    1.4  1  DUF836        Glutaredoxin-like domain (DUF836)
  ------ inclusion threshold ------
      0.099   12.9   0.0       0.14   12.5   0.0    1.3  1  DUF2757       Protein of unknown function (DUF2757)


Domain annotation for each model (and alignments):
>> ArsC  ArsC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   6.5e-20   2.9e-16       5      64 .]      52     125 ..      17     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 6.5e-20
                 T..............GCB-TTSHHHHHCTCCCTTSBHHHHHHHHHH-GGGB-S-EEEESSEEEESSSCCGGGGG CS
                 x..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ArsC   5 n..............ellskrgttyreLnldkedlsedellelilenpsLirRPivvdgkrlqiGfneeeiraf 64 
                                e+l+++++t+ eL ldk  +s+++l+e+++++p Li RPi+  ++++ +G+++e i++f
  CCG92170.1  52 EkwaellkkmgkkpiEILRTKEETFTELKLDKHPFSDEALIEIMAAHPELIQRPILEIEDKAILGRPPECIKEF 125
                 1555555556666779*******************************************************998 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   1.7e-11   7.6e-08       1      43 [.      14      59 ..      14      66 .. 0.82
   2 !    4.7   0.0    0.0079        35      16      45 ..      66      95 ..      56     114 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.7e-11
                  EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSH...HHHHHHHH CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkde...eireelke 43
                  v+++ kptC  C+ka+ +L+e++v++e id   ++   e  +el +
    CCG92170.1 14 VLIYIKPTCSTCRKAVGILDEMKVDYEKIDYFSHPlskEKWAELLK 59
                  89****************************9999955544444444 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0079
                  HHHHHHTTGGEEEEEGCCSHHHHHHHHHHH CS
  Glutaredoxin 16 krlLkelgvkfeeidvdkdeeireelkels 45
                  +++L+++   f+e  +dk++   e+l e++
    CCG92170.1 66 IEILRTKEETFTELKLDKHPFSDEALIEIM 95
                  6899999999*********96666666665 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   2.3e-06      0.01       1      78 [.      13      92 ..      13      96 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.3e-06
                -EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEETT.....T-CC...CHCCCCTTTTEEEECTTCGGB.TCCECGCCB-HHHHH CS
      DUF836  1 kltLyskpgChlCeqakekLkelkleegleleviDIa.....kdee...leakYgleipvlalegvkktsslleelswrldeeqLa 78
                k+++y kp C+ C +a  +L e+k++     e+iD       k e+   l +k+g +  +++  + ++t+++l+ +++++++e L 
  CCG92170.1 13 KVLIYIKPTCSTCRKAVGILDEMKVDY----EKIDYFshplsK-EKwaeLLKKMGKKPIEILRTK-EETFTELKLDKHPFSDEALI 92
                689******************887554....577766455432.222446667776644444444.36677899999999988886 PP

>> DUF2757  Protein of unknown function (DUF2757)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.1e-05      0.14       5      51 ..      20      68 ..      16      93 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.1e-05
                EEETTT--BTT-SSTTT---SS---..SSSSHHHHHHTSSS-TT-S-EE CS
     DUF2757  5 YrCrhCgkkigtlekkeieeealgf..nkLteeerqdmieyeengdikv 51
                 +C  C+k +g l++++++ e++ +  + L++e   +++++  +  i++
  CCG92170.1 20 PTCSTCRKAVGILDEMKVDYEKIDYfsHPLSKEKWAELLKKMGKKPIEI 68
                57********************997456699999999998877766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 895.40
//
Query:       CCG92171.1  [L=372]
Description: Serine-pyruvate aminotransferase/aspartate aminotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-39  135.5   0.0    2.4e-39  135.4   0.0    1.1  1  Aminotran_5      Aminotransferase class-V
     0.0059   15.8   0.0        2.2    7.4   0.0    2.1  2  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.065   12.5   0.0    1.8  2  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
       0.25   10.4   0.0       0.35    9.9   0.0    1.1  1  RmlD_sub_bind    RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.4   0.0   5.3e-43   2.4e-39       2     339 ..      14     337 ..      13     362 .. 0.90

  Alignments for each domain:
  == domain 1  score: 135.4 bits;  conditional E-value: 5.3e-43
                  EEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHH.HHHHHHHHCCCC-TTTSEEEEETTSH CS
  Aminotran_5   2 yldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtte.ainlvalslarslkpgdeivvteaeh 98 
                  +l+ ++++++ ++Vl++++             ++hl   + + +ee+++ +++++++++ e +  +sGt++ +++  + +l   ++p+d+++v+ ++ 
   CCG92171.1  14 LLMGPGPSPVHPSVLEKMSCA----------PIGHLDPFFLSLMEEIKTMLRAVFQTSN-EFTFPISGTGSaGMEFCLVNL---IEPQDRVLVGINGL 97 
                  588999999999999999988..........899************************7.99999******99********...************** PP

                  GGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--.TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEE CS
  Aminotran_5  99 hanlvpwqelakrtgakvkvipldeegeldldeleklln.ektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDfl 195
                   + +  +++la + ga+vk +++ +++++++++l+++++ ek+k+va+ h++++tG+++p+ee++ ++ ++gal+++D ++++g  p+ +++++vD  
   CCG92171.1  98 FGRR--IADLAIKLGAEVKTLEVPWGQSIEVEQLKEAISkEKPKVVALVHAETSTGICNPMEELAPIVAESGALFILDTVTSLGGSPVFIDQWKVDAT 193
                  ****..999999**************************879********************************************************* PP

                  EEETTT.TTSSTT-EEEEEEHHHHHTS....SS.STTSEEEEET.TEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH CS
  Aminotran_5 196 afsghK.llgPtGiGvlyvrkellekl..eplllggemveevsl.eettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeylle 289
                  ++ ++K +  P+G++ +++++++l  +  +++++++ ++++  l  +++     + +++ T ++++ +gl++ l+++ e gl++ ++++ +++ +l+e
   CCG92171.1 194 FSATQKcIGSPPGLSPVSFSPRALDVIakRKTKIPSWYFDCSLLyGYWG---HERLYHH-TAPINNNYGLHQSLRLILEEGLQNRWQRHYQAHLMLKE 287
                  ******7777***************998899**********99955555...7777888.************************************** PP

                  HHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE- CS
  Aminotran_5 290 rlkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGh 339
                  +l++l+   +   d+   + + ++++ ++ +a   ++lLd +gI++  G 
   CCG92171.1 288 GLSQLGLKFFTPEDRRLWQLNAITVPDEKTEAFLRKKLLDAYGIEIGPGL 337
                  *****988775566666677788888899999999**********98775 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00049       2.2     118     188 ..     114     174 ..      56     185 .. 0.85
   2 !    6.5   0.0   0.00088       3.9     274     363 .]     271     366 ..     259     366 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00049
                    EEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEE CS
  Aminotran_1_2 118 vryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDe 188
                     + +   + + ++ +e+l+ea+++      k+kv+++  +   tG   + eel  +   + + ++l ++D 
     CCG92171.1 114 KTLE--VPWGQSIEVEQLKEAISKE-----KPKVVALVHAETSTGICNPMEELAPI---VAESGALFILDT 174
                    4444..34678899*********95.....789***********************...999999999996 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00088
                    HHHHHHHHHHHHHHHHHHHHHSTEEEECCS.CSSEEE...EEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEEC.TTS.-HHHHHHHHHHH CS
  Aminotran_1_2 274 leemrqrlqkrrkelrdeLaelglkvlasq.sgmfll...tdlsaetakelskkLleevgvyvtpgtsftvpgrlRitv.Agl.teeeleelveal 363
                    l+++ qr+ + +  l+++L +lglk+++++   +  l   t+ +++t+  l kkLl+ +g+ + pg  + + +  Ri + A +  +e++e+l+eal
     CCG92171.1 271 LQNRWQRHYQAHLMLKEGLSQLGLKFFTPEdRRLWQLnaiTVPDEKTEAFLRKKLLDAYGIEIGPGLGPLKGKIWRIGLmAEGaRKENIERLLEAL 366
                    566778888889999999999999999998555554411044455577777777*****************999*****98652578899999886 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.5e-05     0.065      60     150 ..      84     179 ..      65     213 .. 0.81
   2 ?   -0.6   0.0      0.14   6.3e+02     237     292 ..     271     324 ..     263     333 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.5e-05
                      TTTT-EEEEESSS-TH..HHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTE.EEEEEB-G...GGB---HHHHHHHHHHCT-EEEEE-TT CS
  DegT_DnrJ_EryC1  60 vgpgdeVIvpsltFva..tanavlelgakpvfvDvdpdtynidpaaieaaitert.kaIlpVhl...yGqvadmdalkaiaakhglkvieDaAh 147
                      ++p d V+v  ++ ++   a  +++lga++  ++v      i+++++++ai ++  k + +Vh+    G ++ m++l  i a+ g  +i D+  
       CCG92171.1  84 IEPQDRVLVGINGLFGrrIADLAIKLGAEVKTLEVP-WGQSIEVEQLKEAISKEKpKVVALVHAetsTGICNPMEELAPIVAESGALFILDTVT 176
                      556677777777766622367889999999999996.6778**********98777999****744468888********************99 PP

                      -TT CS
  DegT_DnrJ_EryC1 148 AlG 150
                      +lG
       CCG92171.1 177 SLG 179
                      998 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.14
                      HHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSSSEEESCEEEEEHCCHH..HCHHH CS
  DegT_DnrJ_EryC1 237 ldelvarRreiaelykeeLaelegtaelttpketkkhawhlyavlveeeae..vkrde 292
                      l++  +r  +++ ++ke+L++l+ +    tp+++  + w l a++v++e++    r++
       CCG92171.1 271 LQNRWQRHYQAHLMLKEGLSQLGLK--FFTPEDR--RLWQLNAITVPDEKTeaFLRKK 324
                      6667777888889999999999953..4444444..699******9998553222444 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   7.8e-05      0.35       5      81 ..      91     167 ..      88     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 7.8e-05
                    EESTTSHHHHHHHHHCTTTSEEEEEE-TTT--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHH CS
  RmlD_sub_bind   5 vtGanGqlGseLakqlaeeglevlaltreeldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaea 81 
                    ++G nG+ G+ +a+++ + g+ev +l+ +  +  + e+++e++++ kp+vv  + A t    +   ee+a  v + +
     CCG92171.1  91 LVGINGLFGRRIADLAIKLGAEVKTLEVPWGQSIEVEQLKEAISKEKPKVVALVHAETSTGICNPMEELAPIVAESG 167
                    78*************************************************99999998877777777776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2758.41
//
Query:       CCG92172.1  [L=385]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-32  111.0   0.0    6.2e-32  110.5   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    2.1e-30  105.9   8.9    5.1e-30  104.7   4.7    2.4  3  Glyco_transf_4   Glycosyltransferase Family 4
    5.4e-26   91.9   0.2    2.3e-25   89.9   0.1    1.9  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    1.3e-25   90.4   0.0      2e-25   89.8   0.0    1.3  1  Glyco_trans_1_4  Glycosyl transferases group 1
    9.5e-22   77.9   0.4    9.3e-12   45.2   0.1    2.3  2  Glyco_transf_5   Starch synthase catalytic domain
    2.6e-06   27.5   0.1    9.1e-06   25.8   0.0    1.9  2  Glyco_trans_4_2  Glycosyl transferase 4-like


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.0   2.1e-35   6.2e-32      10     171 ..     205     362 ..     199     363 .. 0.97

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 2.1e-35
                      TTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSB CS
  Glycos_transf_1  10 gknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisE 103
                      g+   ++++l+ grl+++Kg+dll++a++ + k  n n+k+++aG+g  + +l++++ +l++++ v+f+g+    dl+ l+++ d++vlps++E
       CCG92172.1 205 GIGPMDPTFLFCGRLTHQKGPDLLLEAIPWVLKF-NGNAKFIFAGDGYLRSQLENRSWQLGIRHAVRFIGHRFGADLHDLFRAVDAVVLPSRNE 297
                      677789*************************987.*********************************************************** PP

                      SS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHHH CS
  Glycos_transf_1 104 gfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenark 171
                      +fGi++lE  aag+pvia+ +g  +e v +g +G+ v p+ +e++a +  +++++ e+++ +g+n+rk
       CCG92172.1 298 PFGIAVLEGWAAGKPVIATHNG--SEFVWHGINGYKVYPT-PESIAWGCCEIMKNFEHSRWMGQNGRK 362
                      ********************99..59**************.*************************98 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   4.7   1.7e-33   5.1e-30       1     168 [.      16     188 ..      16     189 .. 0.82
   2 ?   -1.5   0.0      0.71   2.1e+03     121     142 ..     275     295 ..     238     298 .. 0.71
   3 ?    2.8   0.1     0.035     1e+02      83     109 ..     298     325 ..     258     380 .. 0.74

  Alignments for each domain:
  == domain 1  score: 104.7 bits;  conditional E-value: 1.7e-33
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllr.slaflrr.lrrllkre....kpDvvHahspaalgaall 89 
                     vGG ++hv eLa +L rrGh+V+v+t++++  +++  +++v  +r  + +++++   +    r+ + +l+k+e    ++D++H+h++ + +a+ +
      CCG92172.1  16 VGGLAVHVTELAAGLSRRGHQVHVFTRRQNWMSHYDCIDGVHYHRCDFAFHPDFITeMHNLCRSfIGHLWKEEdyagGFDIIHSHDWLTSMAGKW 110
                     7******************************9999964444444444444444433022223331334444447889**************9999 PP

  Glyco_transf_4  90 alrrrlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDl 168
                     a +  +g ++V+t+H++++ r  + +++  s+++r le   ++ adr+iavS++++ e+++ y+  + ki VipnG+ +
      CCG92172.1 111 AKWG-RGRRFVFTLHSTEYGRCGNCHHGGNSARIRHLEGEGAHYADRIIAVSNQLKWEIVSIYHQWEGKIWVIPNGISV 188
                     9998.*************86666678899999999*****************************999*********975 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.71
  Glyco_transf_4 121 rllralerrllrradrviavSe 142
                     r+   l   l+r++d+v+ +S+
      CCG92172.1 275 RFGADL-HDLFRAVDAVVLPSR 295
                     333332.234788999998887 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.035
  Glyco_transf_4  83 algaallalrrrlgiplVltvHglye..k 109
                     ++g a+l  ++  g+p+++t  g++   +
      CCG92172.1 298 PFGIAVLEGWA-AGKPVIATHNGSEFvwH 325
                     45677888887.99999999999886551 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.1   7.6e-29   2.3e-25       1     160 []      17     185 ..      17     185 .. 0.89
   2 ?   -0.4   0.0      0.45   1.4e+03     124     138 ..     281     295 ..     217     313 .. 0.67

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 7.6e-29
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrpspla.dlaalralrrll...rqrrerpdvvhahsptaglaarl 90 
                      gG +++v ela++L +rGh+V+v+t+++   ++    dgv++hr+++  +p+  + ++  +r + + l   +  + ++d++h+h++++++a+++
       CCG92172.1  17 GGLAVHVTELAAGLSRRGHQVHVFTRRQNWMSHYDCIDGVHYHRCDFAFHPDFITeMHNLCRSFIGHLwkeEDYAGGFDIIHSHDWLTSMAGKW 110
                      8*************************99999997789**************966625668899999997765569******************* PP

  Glyco_trans_4_4  91 arrrrgiplvvtlhgll.lrrg...sgavrrlyralerrllrradavlvvseaeaeelra.lgvpadrvvvvpng 160
                      a+++rg ++v+tlh+++ +r g    g   + +r le   ++ ad++++vs+++  e++  +     ++ v+png
       CCG92172.1 111 AKWGRGRRFVFTLHSTEyGRCGnchHGGNSARIRHLEGEGAHYADRIIAVSNQLKWEIVSiYHQWEGKIWVIPNG 185
                      **************87754444555778888889**************************8778899*******8 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.45
  Glyco_trans_4_4 124 rrllrradavlvvse 138
                      + l+r +dav+ +s+
       CCG92172.1 281 HDLFRAVDAVVLPSR 295
                      367788888888887 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   6.6e-29     2e-25       2     134 .]     211     349 ..     210     349 .. 0.90

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 6.6e-29
                      EEEEEES---GG.GTHHHHHHHHHHHH.HH..EEEEEES---...HHHHHHH.T.T-T.TEEEE---..THHHHHHHH-SEEEE--..---SHH CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllrkkd..vrlvivGdgp.rpeeleela.a.gleerveftGfv..edlaellaaadvfvaPs..egfglk 86 
                      p++lf+Grl+ ++kg dlllea+p ++k +  ++++++Gdg  r+ +le++  + g+++ v+f G++  +dl +l++a+d +v+Ps  e fg++
       CCG92172.1 211 PTFLFCGRLT-HQKGPDLLLEAIPWVLKFNgnAKFIFAGDGYlRS-QLENRSwQlGIRHAVRFIGHRfgADLHDLFRAVDAVVLPSrnEPFGIA 302
                      799******5.56**************66556*********9665.**9988559**999**************************999***** PP

                      HHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                      +lE  aag+pv+at   g +e+v  g ng+ v p  pe++a  +++++++
       CCG92172.1 303 VLEGWAAGKPVIATHN-G-SEFVwhGINGYKVYP-TPESIAWGCCEIMKN 349
                      ***************9.8.89999*****99955.799999999888875 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   6.9e-11   2.1e-07       1      47 [.       2      48 ..       2      74 .. 0.87
   2 !   45.2   0.1   3.1e-15   9.3e-12     118     233 ..      76     172 ..      57     181 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 6.9e-11
  Glyco_transf_5  1 kilfvasEvaplaktGGLadvvgaLpkaLaklghdvrvilPrygaik 47
                    ki ++++E    + +GGLa +v++L+  L+++gh+v+v++ r + ++
      CCG92172.1  2 KIAMFSWETLHSIAVGGLAVHVTELAAGLSRRGHQVHVFTRRQNWMS 48
                    89**************************************9875555 PP

  == domain 2  score: 45.2 bits;  conditional E-value: 3.1e-15
  Glyco_transf_5 118 fsraalellekl.gwk..pdvihahDWhtalvpallkelykerglfkkiktvftiHNlayqgrfpkdel.aalglpaedfekldglefygkvnfl 208
                     ++r  +  l+k  ++   +d+ih hDW t++++ ++k+ +         ++vft+H+++y ++ + ++  +                 + ++  l
      CCG92172.1  76 LCRSFIGHLWKEeDYAggFDIIHSHDWLTSMAGKWAKWGR-------GRRFVFTLHSTEYGRCGNCHHGgN-----------------SARIRHL 146
                     555555555553445236*****************99975.......389**************9665422.................2367778 PP

  Glyco_transf_5 209 k.agivyadavttVSptyakEiltpe 233
                     +  g  yad++++VS++ ++Ei++ +
      CCG92172.1 147 EgEGAHYADRIIAVSNQLKWEIVSIY 172
                     879********************977 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0     3e-09   9.1e-06      11     110 ..      21     127 ..      14     160 .. 0.78
   2 ?   -2.2   0.0       1.3   3.8e+03      98     111 ..     310     322 ..     301     330 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3e-09
  Glyco_trans_4_2  11 vhtlrlakeLakrgyeVhvitpkkga.kdeleaegihvhrlkvd.rkg.pleyl.ka.f.klkklikki....kPDvvhahyakpygllgslaa 94 
                      vh+++la +L+ rg++Vhv+t+++   ++++  +g+h hr +   +    ++++ ++ +  +  l+k++    ++D++h h      ++g+ a 
       CCG92172.1  21 VHVTELAAGLSRRGHQVHVFTRRQNWmSHYDCIDGVHYHRCDFAfH-PdFITEMhNLcRsFIGHLWKEEdyagGFDIIHSHDW-LTSMAGKWA- 111
                      79********************77777**************86642.2444444233232456777776333368******95.446888886. PP

  Glyco_trans_4_2  95 rlsgvipvvlsvwGld 110
                      + ++  ++v++ + + 
       CCG92172.1 112 KWGRGRRFVFTLHSTE 127
                      777779*****99775 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
  Glyco_trans_4_2  98 gvipvvlsvwGldv 111
                      g +pv++++ G+ +
       CCG92172.1 310 G-KPVIATHNGSEF 322
                      4.89*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2946.07
//
Query:       CCG92173.1  [L=381]
Description: Alpha-amylase/alpha-mannosidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-30  104.5   0.7    1.5e-29  103.3   0.0    1.9  3  Glyco_hydro_57   Glycosyl hydrolase family 57
  ------ inclusion threshold ------
      0.023   14.6   0.0      0.071   13.0   0.0    1.9  2  Polysacc_deac_1  Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Glyco_hydro_57  Glycosyl hydrolase family 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.1   0.0    0.0051        45       1      61 [.       7      67 ..       7      75 .. 0.77
   2 !  103.3   0.0   1.6e-33   1.5e-29      78     322 ..      37     284 ..      30     287 .. 0.83
   3 ?   -3.6   0.1      0.54   4.9e+03     105     124 ..     322     341 ..     300     365 .. 0.51

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0051
                    EEEEEE-----TTS-SSSSSHHHHHHHHHHTHHHHHHHHHHHH.HTT----EEEEE-HHHHH CS
  Glyco_hydro_57  1 afvfhqHqplykkpgkgeytlpwvrehaaedYiklalilekfp.kvhvtfeLsgsLiaqLee 61
                    a+++h+Hqpl +       t++w  +++   Y   ++ l ++  k +v f +sg L++q  +
      CCG92173.1  7 ALGLHMHQPLGNLNL-LLDTNRWEAQQILLAYERPIHFLRRYGdKAKVHFGFSGTLLEQFLD 67
                    6889******97333.2235678888888899999999999961457889999999999876 PP

  == domain 2  score: 103.3 bits;  conditional E-value: 1.6e-33
                     HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH.....HHHHT.TT-HHHHHHHHH...HCTSEEEEEE-TT-B-GGG-S-HHHHHHHHHHHHHHH CS
  Glyco_hydro_57  78 lelieeglerctelkldlavlfnlaisgplle.....qiqkwlnkevlelfrelq...esgqvElltspyyHpllpllpdsedieaqvkkarely 164
                     +e++  +l+r+++        + + +sg+lle      iq++  +++l+l r l    +   +El++ +y Hp++p++p  ed+e+q+ ++r+++
      CCG92173.1  37 YERPIHFLRRYGDKA-----KVHFGFSGTLLEqfldpAIQQK-SQDILDLGRMLEaykQLPSIELVGMGYFHPVFPIIPI-EDWEEQLWLHRQCI 124
                     777788888888877.....799999******9999989999.99999999998843345568*****************.************** PP

                     HHHHSS--SBEE-GGG-B--SHHHHHHHTT--EEEE-C------------TTS-EE-TTS...-EEEE--CHH-TTTSGGG-............T CS
  Glyco_hydro_57 165 eeyfgqePrgfwlpElavspeileilaelGfeylftdelaeiledkskespyrpyllkngg..iavffRdreLsddigFryseqypleavddfin 257
                     e+ fg++P+gf++pE+ ++ e++++l e G++y+++d+ +   +d +   py +yl++ +g  ia+++R+r+Ls++      ++ p     ++ n
      CCG92173.1 125 EKVFGRKPKGFFPPEMGFTMEMIPYLVEVGYSYVIVDSAHIRRQDGQPTAPYQVYLAEWKGksIAIVPRERDLSNAQQS---GMDPVWFLGEAKN 216
                     ***************************************9999999999********999999***********99664...4555544444444 PP

                     TSB..........-TT---TTT-.-BB-TT-S---HHHHH....HHHHHHHHHHHHHHHHHHHHSS-EEE CS
  Glyco_hydro_57 258 wlkkvkkaksevvtialdgEnwg.hypetgkkeFleklye....eleenglielvtpsefikklkpkgli 322
                       k++  a + ++t+ +dgEn g  ++ +   +F  ++++    ++e +g +elv + e+i++++p++ +
      CCG92173.1 217 KTKSF--ASPVLITTWTDGENGGwFRNLSDSANFWGYFFSpyleKIEAQGDFELVFLAEYIEQHPPTEKV 284
                     44544..278899999*****885455455555666666662225555559***************9765 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 0.54
                     HHHHHHHHHT.TT-HHHHHH CS
  Glyco_hydro_57 105 gplleqiqkwlnkevlelfr 124
                      ++ e ++++  +  le  r
      CCG92173.1 322 AKYWEKAKEQQVNSGLEYTR 341
                     33333222222222223333 PP

>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.9e-06     0.071      66     124 .]     100     158 ..      36     158 .. 0.85
   2 ?   -1.6   0.0      0.26   2.3e+03      42      75 ..     273     308 ..     255     343 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.9e-06
                      SS--EGGGSHHHHHHHHHHHHHHHHHHHHS----EEE-GGGEE-HHHHHHHHHTT.EEE CS
  Polysacc_deac_1  66 inhsnlkrlseeevrreierakdalrkalgreprlfryPygsasatvlevarelgfayv 124
                      + h+ +     e+ ++++   ++ ++k++gr+p+ f +P   ++ +++ ++ e+g+ yv
       CCG92173.1 100 YFHPVFPIIPIEDWEEQLWLHRQCIEKVFGRKPKGFFPPEMGFTMEMIPYLVEVGYSYV 158
                      5566666666677788888899**********************************985 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.26
                      HHHCH-HHHHHHHHHTT.EEEEE--.SS--EGGGSH CS
  Polysacc_deac_1  42 glvedypdevremaasG.veignHt.inhsnlkrls 75 
                      +++e++p   +  ++ G + +g+ + ++ s+++  +
       CCG92173.1 273 EYIEQHPPTEKVHVQTGaWNVGSTSgYDFSQWTGSQ 308
                      467777777777888888888875445555553322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2741.12
//
Query:       CCG92174.1  [L=319]
Description: Glycosidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-22   79.5   0.0    3.2e-21   76.2   0.0    2.3  2  Alpha-amylase  Alpha amylase, catalytic domain
    1.3e-14   54.2   0.0    2.1e-14   53.5   0.0    1.2  1  hDGE_amylase   Glycogen debranching enzyme, glucanotransferas
     0.0071   15.3   0.0      0.014   14.3   0.0    1.5  2  Melibiase      Melibiase
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.025   14.7   0.0    1.4  1  GHL6           Hypothetical glycosyl hydrolase 6


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0   7.2e-25   3.2e-21      13     178 ..      32     171 ..      20     181 .. 0.86
   2 ?   -1.5   0.0      0.32   1.4e+03     273     295 ..     236     258 ..     205     264 .. 0.78

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 7.2e-25
                    CCCCT-SCEEE-B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGGCCC-E......E CS
  Alpha-amylase  13 lkeLGvtaiwlsPifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkrdyyiwkegkeek 108
                    +  +G++ ++l+Pi    ++   Y i + ++i pe+Gt e++++ ++ +h++g+kv +DlV+NH + ++      +k+    + d+ +w+ g  ++
     CCG92174.1  32 IIWMGFDILFLNPISPCGASGSIYSILNPKAIAPEYGTEEAFQRFLNLCHQQGLKVWVDLVANHIAIDSPL----IKE----HPDWIVWEGG--QP 117
                    6679*************************************************************999986....442....348****977..56 PP

                    SS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCCCCCCCCTTT-SEEEETTCCCT CS
  Alpha-amylase 109 eppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkdvvkfwlekgidGfRlDvvkhv 178
                    + p +      + +w               k+l++L+  ne+v+ + k v+k+wl+ g+dGfR D v  +
     CCG92174.1 118 KNPGCVD----NGQWI------------SWKDLAQLDFSNESVVDYQKSVIKYWLDLGVDGFRADYVYGI 171
                    6666653....33332............3567999******************************98666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.32
                    S-CCCTTCEEES--TTS--HHHH CS
  Alpha-amylase 273 leeaaeeavtflgnHDqeRilsr 295
                    +++++ +   f ++HD+ R +s+
     CCG92174.1 236 YSQESIKLIGFPESHDTVRCASF 258
                    55555666678899****99986 PP

>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   4.6e-18   2.1e-14       6     115 ..       7     108 ..       5     111 .. 0.91

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 4.6e-18
                   TS-EEEEE-GGGS-SHHHHHHHHHHHHHTT--EEEES--EEE-TT--TTSEEEEEEE-TTT-.....SSC.HHHHHHHHHHHHHH--EEEEEE--SE CS
  hDGE_amylase   6 dslsiqtvlskllGpleeWekvlkeikekgYnmiHftPlqelGesnSpYSiadqleldkelfeekdkeekeedveklvkklekeygllsltDvVlnH 102
                   +++ i  +  +llG++++We++l +i   g++++ + P+   G+s+S YSi +   + +e         +ee ++++++ ++ + gl   +D+V nH
    CCG92174.1   7 KKIWIYNIFPRLLGTIKDWESHLGRIIWMGFDILFLNPISPCGASGSIYSILNPKAIAPEYG-------TEEAFQRFLNLCH-QQGLKVWVDLVANH 95 
                   678899999**************************************************994.......4456888887665.579*********** PP

                   EETT-CCCCC-GG CS
  hDGE_amylase 103 tannskwleehPe 115
                   +a +s++++ehP+
    CCG92174.1  96 IAIDSPLIKEHPD 108
                   ************8 PP

>> Melibiase  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.2e-06     0.014     105     172 ..      72     149 ..      64     169 .. 0.70
   2 ?   -3.2   0.0       0.7   3.1e+03     267     294 ..     177     204 ..     171     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.2e-06
   Melibiase 105 gleelakevhekglkfGlWvePemvsadselyrehPdwvlqvedrsrtes...rnqlv.......Ldlsrpdvvdyii 172
                 +++ + +  h++glk  + +  + ++ ds l +ehPdw++   ++++  +     q +       Ld+s++ vvdy  
  CCG92174.1  72 AFQRFLNLCHQQGLKVWVDLVANHIAIDSPLIKEHPDWIVWEGGQPKNPGcvdNGQWIswkdlaqLDFSNESVVDYQK 149
                 5677888899999998888889*****************987776654431112222222222236666666666655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.7
   Melibiase 267 rlkiqygtslvyPisalgahvsavPneq 294
                 +  i yg s++  ++ +g+ ++  P++ 
  CCG92174.1 177 KELIAYGRSILLNVQFFGEALGCPPEQV 204
                 5569999**********99999999875 PP

>> GHL6  Hypothetical glycosyl hydrolase 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   5.6e-06     0.025      52      92 ..      77     118 ..      62     165 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.6e-06
        GHL6  52 vkachregikvvv..rvdfskaderiyeqhpeWaavkenGevi 92 
                  + ch++g+kv v   +++  +d+ ++++hp+W++  e+G++ 
  CCG92174.1  77 LNLCHQQGLKVWVdlVANHIAIDSPLIKEHPDWIV-WEGGQPK 118
                 567********98334577789***********85.5666764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2529.53
//
Query:       CCG92175.1  [L=137]
Description: Lactoylglutathione lyase or related enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-15   57.0   0.0    5.1e-15   55.8   0.0    1.6  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    1.9e-07   31.3   0.0    2.9e-07   30.7   0.0    1.3  1  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
     0.0042   17.0   0.0      0.092   12.7   0.0    2.4  1  Glyoxalase_2  Glyoxalase-like domain
  ------ inclusion threshold ------
      0.018   15.8   0.0      0.031   15.1   0.0    1.4  1  Glyoxalase_6  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   1.1e-18   5.1e-15       2     128 .]       7     131 ..       6     131 .. 0.77

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 1.1e-18
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGE CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvk 100
                 i+hv+l+v+dle+s++FYt+vLG+k + + +      +  +a+f +g++++ l+  ++p +   + +   ++ +hvaf+++++ +   al  lk +g++
  CCG92175.1   7 IHHVTLPVKDLERSIRFYTEVLGLKQIVRPP-----FSFPGAWFEVGNQQLHLTVVSSPIPNTESRWI-DTKARHVAFRVKNITE---ALTWLKGKGYS 96 
                 9***************************999.....66677899999999999998888776555533.2357899999998888...88888999955 PP

                 EEEEEECHHCTEEEEE........EEEETTSEEEEE CS
  Glyoxalase 101 vvaepgrhyfgalysf........yfrDpdGillei 128
                   ++ +  +  ++           +  DpdG+llei
  CCG92175.1  97 EEQT-DPAFRLKINLNsvagfpqiFLLDPDGHLLEI 131
                 4444.344444433336667778789*******997 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   6.5e-11   2.9e-07       1      95 [.       8      99 ..       8     107 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 6.5e-11
                  EEEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETTEEEEEE.EESSTT-THHHTS-EEEEEEEEES-HHHHHHHHCTTTEEEEE CS
  Glyoxalase_4  1 dQigivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgsvqieLi.eplegpeflaehgeglhhlaywvddldaavarleeqGfevvq 95
                  +++ + V+Dle+ +++++++lG++   ++  +p ++  a++++g++++++ ++ +p++++e+ +   ++  h+a++v+++ +a+ +l+ +G++  q
    CCG92175.1  8 HHVTLPVKDLERSIRFYTEVLGLK---QIVRPPFSFPGAWFEVGNQQLHLTVVsSPIPNTES-RWIDTKARHVAFRVKNITEALTWLKGKGYSEEQ 99
                  89********************85...45557788999999999988777766368888754.5578999*********************98555 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.1e-05     0.092       4      82 ..      10      93 ..       7     136 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.1e-05
                  ---EES-HHHHHHHHHHTT---EEE..E-SS.EEEETTS-.EEEEH.HHHHH-------S--SS-EEEEEES-HHHHHHHH..G CS
  Glyoxalase_2  4 illvvkdieeskkFYedvlelkikl..dfGe.nvsfetgf.alked.lkelinldesiaeqsnnfeLyFevedvdaflqklkea 82
                  + l vkd+e+s +FY +vl lk +    f      fe g  +l+   +++ i   es     +  ++ F v+++ ++l  lk +
    CCG92175.1 10 VTLPVKDLERSIRFYTEVLGLKQIVrpPFSFpGAWFEVGNqQLHLTvVSSPIPNTESRWIDTKARHVAFRVKNITEALTWLKGK 93
                  56789*************998844301332102334444323332213333333333333555556667777777777766644 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   6.8e-06     0.031       2     103 ..      10     128 ..       9     132 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.8e-06
  Glyoxalase_6   2 vvldaadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpe.........paknrvHldlavedldaevarlvalGArvlreprd 89 
                   v+l ++d ++ ++F+ ++lg++   ++    + ++++  ++++ +l +   p          + k   H+ ++v+++ ++   l   G ++ +++ +
    CCG92175.1  10 VTLPVKDLERSIRFYTEVLGLKQIVRPPFSFPGAWFEV-GNQQLHLTVVSSPIpntesrwidT-K-ARHVAFRVKNITEALTWLKGKGYSEEQTDPA 103
                   788899**************987666634444455554.445555555555546577666532.2.37******99999999988888766655444 PP

  Glyoxalase_6  90 gthgr..............vlaDPeGne 103
                       r               l DP+G+ 
    CCG92175.1 104 F---RlkinlnsvagfpqiFLLDPDGHL 128
                   3...223567777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1057.69
//
Query:       CCG92176.1  [L=117]
Description: VanZ like family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-10   40.4   1.3    6.1e-10   39.8   1.3    1.3  1  VanZ            VanZ like family
  ------ inclusion threshold ------
      0.013   15.8   0.1      0.013   15.8   0.1    2.3  3  Transgly_assoc  Transglycosylase associated protein
      0.029   13.2   0.5      0.035   13.0   0.5    1.1  1  MFS_1_like      MFS_1 like family


Domain annotation for each model (and alignments):
>> VanZ  VanZ like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   1.3     1e-13   6.1e-10      56     122 ..      37     105 ..       7     112 .. 0.78

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 1e-13
        VanZ  56 vgnvalfvplGfllplllkkk..flkvlllgfllslsiElhQlfvpgRsfdvdDvilntlGallGilly 122
                   ++++f+ + +l  l+ + +  +l+ +++++l+ +++E  Q ++pgR +d+ D++ ++lGa +G+++ 
  CCG92176.1  37 SDKILHFFGYSILGWLFCQAStkLLYGIAFAALFGMIDENYQRLIPGRQCDFYDWLADCLGATIGAIIS 105
                 679******66665555544455667999*************************************986 PP

>> Transgly_assoc  Transglycosylase associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.53   3.2e+03      10      18 ..       5      13 ..       4      27 .. 0.73
   2 ?   -1.6   0.2      0.56   3.3e+03      13      30 ..      51      64 ..      43      73 .. 0.47
   3 ?   15.8   0.1   2.1e-06     0.013      26      48 ..      91     113 ..      80     114 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.53
  Transgly_assoc 10 vGgfllgll 18
                    +G ++l ll
      CCG92176.1  5 IGKWVLALL 13
                    677777666 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.56
  Transgly_assoc 13 fllgllgigvgggelasl 30
                    +l+     + ++  l+++
      CCG92176.1 51 WLF----CQASTKLLYGI 64
                    332....23333444444 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 2.1e-06
  Transgly_assoc  26 elaslivaiiGAiILLfivrlvr 48 
                     +la  + a+iGAiI + i+rl++
      CCG92176.1  91 WLADCLGATIGAIISVGILRLFK 113
                     78899****************97 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.5   5.8e-06     0.035     298     370 ..      37     105 ..      26     116 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.8e-06
  MFS_1_like 298 layilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliG 370
                 +  il f++y+i+  +     + +L+gi+f++l++++ e  ++++p +       ++  l  +lG  +G++i+
  CCG92176.1  37 SDKILHFFGYSILGWLFCQASTKLLYGIAFAALFGMIDENYQRLIPGRQCD----FYDWLADCLGATIGAIIS 105
                 557999*******99999************************999988765....567888999******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 777.88
//
Query:       CCG92177.1  [L=109]
Description: hypothetical protein MFUM_40016 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.095   11.7   0.1       0.11   11.5   0.1    1.1  1  Potyvirid-P3  Protein P3 of Potyviral polyprotein


Domain annotation for each model (and alignments):
>> Potyvirid-P3  Protein P3 of Potyviral polyprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   6.2e-06      0.11     319     368 ..      13      62 ..       6      76 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.2e-06
  Potyvirid-P3 319 efeeyaeylkevdkklvqFaqaqlvedvrhqakddevknlekvvAsivLv 368
                   + e++++y+ + ++k++++++ + +++++ q+++d   n+   v  ++L 
    CCG92177.1  13 KVEDFIRYIFSDYRKRSSWQRRKGEDQITVQKSKDPFANISVHVGRMILN 62 
                   5689************************************9999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 749.00
//
Query:       CCG92178.1  [L=418]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-20   71.5   0.0    1.5e-19   70.3   0.0    1.7  2  FIST_C    FIST C domain
    8.9e-20   71.4   1.1    9.8e-17   61.5   0.2    2.1  2  FIST      FIST N domain
  ------ inclusion threshold ------
      0.065   13.5   0.0       0.12   12.6   0.0    1.4  1  AFP_2     Bacterial antifreeze protein repeat


Domain annotation for each model (and alignments):
>> FIST_C  FIST C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.6   9.3e+03     105     128 ..      50      71 ..      46      71 .. 0.73
   2 !   70.3   0.0   2.5e-23   1.5e-19       1     129 [.     252     392 ..     252     393 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.6
      FIST_C 105 elqavrealgdgvplaGfftyGEi 128
                 +++++++ l+   +l G+ + GE+
  CCG92178.1  50 VVSQIKKSLS--GHLWGLSSAGEF 71 
                 5677777764..589999999995 PP

  == domain 2  score: 70.3 bits;  conditional E-value: 2.5e-23
      FIST_C   1 Alevylellgeedeelaqsal..fplgleel.ggdflvrhllgvdpedgslaladdveeGqrlqlmlrdaealiedlerlleea....ak....egall 88 
                 A++vy el+  ++++ a +a   +plg++e  + + ++ ++ ++  +dgs+a+++++++G+ + l ++d ++ ie  + ++++a          ++++l
  CCG92178.1 252 AADVYMELTASSSWQEAFHAFnsHPLGIVEPvSHYWHIHSPAAIQ-KDGSMAFFSEIPQGSGVSLLEADSQSRIESTRLAVQRAiadaGYpqkiAAVVL 349
                 89*******889999999966666*****9898899999**9988.89***************************555555555332222433457*** PP

      FIST_C  89 fsCigR...glglgedadeelqavrealgdgvplaGfftyGEig 129
                 f+Ci +    + l+++ +e +qav++ +g++vpl+G+ tyGE g
  CCG92178.1 350 FNCILChqqSERLKTGRAE-IQAVKSLVGENVPLIGASTYGETG 392
                 ******7666667999967.**********************87 PP

>> FIST  FIST N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.2   1.6e-20   9.8e-17       2     172 .]      36     250 ..      35     250 .. 0.74
   2 !    8.8   0.1   0.00025       1.5      18      55 ..     369     411 ..     346     415 .. 0.67

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 1.6e-20
        FIST   2 lvlvfasaeasdleallealrealpgapliGcstageias.egleledgvvalalasa....................daageelakal.......... 69 
                 + ++f+s+ + +++++++++++ l   +l G s+age+ + e+    +g+ +l++  +                    +  +++    +          
  CCG92178.1  36 FTICFISSTF-NQQQVVSQIKKSLS-GHLWGLSSAGEFNGiEEAMTCGGIFLLSV--EplanvlksnvsygtigvdaeN-SAKA----Ivqkafeglqf 125
                 789****867.8999*********4.79**********54246667777777777..3445777776766655553321.2222....12222344455 PP

        FIST  70 ....................pkllllladglssneeellegldealaspdvpivGGl.agdgtlaf...ktyvlfnggvledgvvvvllsgeslevgta 144
                                     + + ll+a      ee+ l+g+ e+++  +v+i GG+ a +  l +   +ty++ ++++ +++++v+ l ++ l+ g++
  CCG92178.1 126 dpellylgfsgkkpadllkaTPFSLLIAHSQIGTEEKCLKGICEYVGR-GVRISGGSgADSLYL-ErvtETYCYADDKAEKNALSVLSLATT-LKNGVG 221
                 655556666666655554442236666777778999*******99987.9******83444444.36*66*******************999.9***** PP

        FIST 145 vsqgyrpi.gkpfvVTkaegnvileLdgk 172
                 +++ +rp+ gk   VT++ g+v+++L+++
  CCG92178.1 222 IANAFRPVpGKGAFVTESFGRVVYSLNHR 250
                 ********999****************97 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00025
        FIST  18 lealrealp.gapliGcstagei....ase.gleledgvvalal 55 
                 ++a+++ ++ ++pliG+st ge     a++ g+ + ++++++ l
  CCG92178.1 369 IQAVKSLVGeNVPLIGASTYGETgytiAGTvGH-HNQTTTVWLL 411
                 3679999988************95444324244.6666666655 PP

>> AFP_2  Bacterial antifreeze protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     2e-05      0.12       2      24 ..     177     199 ..     176     208 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2e-05
       AFP_2   2 vdGGtGtDSieLkgytkadyyan 24 
                 + GG+G DS++L+ +t    ya+
  CCG92178.1 177 ISGGSGADSLYLERVTETYCYAD 199
                 89***********9997655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2969.78
//
Query:       CCG92179.1  [L=854]
Description: Outer membrane receptor protein, mostly Fe transport [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00073   20.1   0.5     0.0019   18.7   0.5    1.8  1  Plug      TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.5   1.1e-07    0.0019      43     107 ..     147     207 ..      89     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.1e-07
                 STTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHCTTSSTGSSE CS
        Plug  43 gggassisiRGlgsnrvlvlvDGvpianggsgagdlssidpedierievlkGpasalyGsdaigG 107
                  g as  +iRG    + l+l++G++  + ++++ ++   + +++e+++++ Gp+ a +G+  + G
  CCG92179.1 147 YGIASAPTIRGR---NGLTLINGIEE-TLNNNSEQNIPWNYNMVESMDIVEGPSNAVFGATQVSG 207
                 566788999**8...89*******94.45666666667889******************998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 5668.83
//
Query:       CCG92180.1  [L=218]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.15   11.7   0.0       0.27   10.9   0.0    1.4  1  Phage_P2_GpU  Phage P2 GpU


Domain annotation for each model (and alignments):
>> Phage_P2_GpU  Phage P2 GpU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.5e-05      0.27       5      37 ..     181     213 ..     178     215 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.5e-05
  Phage_P2_GpU   5 Felntlafqelqrstsarwaeherlggrpalqf 37 
                   F l+   +q +  ++++rw++  r++++ + q+
    CCG92180.1 181 FRLEPPGYQRVGSTVNWRWSNIPRIDQKIRIQW 213
                   899999*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1496.10
//
Query:       CCG92181.1  [L=170]
Description: hypothetical protein MFUM_440001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1325.29
//
Query:       CCG92182.1  [L=47]
Description: hypothetical protein MFUM_450001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.045   13.5   0.0      0.045   13.5   0.0    1.1  1  DUF3719   Protein of unknown function (DUF3719)


Domain annotation for each model (and alignments):
>> DUF3719  Protein of unknown function (DUF3719)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.5e-06     0.045      32      52 ..      16      36 ..       6      46 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-06
     DUF3719 32 grqlvlPadEGfqyyptpaps 52
                gr+  +P +EG q++pt +++
  CCG92182.1 16 GRRRRHPITEGLQHEPTGMSV 36
                466679**********99843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       168  (0.00937029); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 360.07
//
Query:       CCG92183.1  [L=66]
Description: hypothetical protein MFUM_450002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       176  (0.0098165); expected 358.6 (0.02)
Passed bias filter:                      152  (0.00847788); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 559.06
//
Query:       CCG92184.1  [L=85]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 677.16
//
Query:       CCG92185.1  [L=261]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1913.57
//
Query:       CCG92186.1  [L=813]
Description: phosphoenolpyruvate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-112  376.2   0.0   2.1e-112  375.6   0.0    1.2  1  PPDK_N           Pyruvate phosphate dikinase, PEP/pyruvate bi
    1.8e-60  204.6   0.0    2.7e-60  204.0   0.0    1.2  1  PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
    3.3e-24   84.4   0.1    6.8e-24   83.4   0.1    1.6  1  PEP-utilizers    PEP-utilising enzyme, mobile domain
    6.3e-05   23.5   0.2       0.45   11.1   0.0    2.8  2  Phage_pRha       Phage regulatory protein Rha (Phage_pRha)


Domain annotation for each model (and alignments):
>> PPDK_N  Pyruvate phosphate dikinase, PEP/pyruvate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.6   0.0  4.6e-116  2.1e-112       3     320 ..      26     363 ..      24     370 .. 0.97

  Alignments for each domain:
  == domain 1  score: 375.6 bits;  conditional E-value: 4.6e-116
      PPDK_N   3 lvGGKganLael...lneagipvPpgfaitadafrefleengleekideelkeldvddvdelrkaskeirelilsaelPeeleeaikeayeelgkkfgd 98 
                  vGGK+a+L+e+   l+  gi++P+gfait+ a+++f+++n++++ id++l++++ +d++++++ask ir++i+++++P + ++ai +ay+ l+k+   
  CCG92186.1  26 EVGGKNASLGEMmkeLSPFGIKIPNGFAITSWAYEQFISYNNIRDIIDHKLQDINYSDINNVKEASKYIRNIIINSKFPYKYKKAIISAYNYLSKDSRI 124
                 79**********88888899******************************************************************************* PP

      PPDK_N  99 eelpvaVRSSataEDlpkasfaGqqdtyLnvggeeevleaikavfaSlfnerAilYrkekgldheevalavvvqkmvnsdlgasGVafsldpetGfkde 197
                 e+++vaVRSSa+ EDlp asfaGqqdtyLn++g+ ++l+aik ++aSl++erAi Yrke g++h +++++v+vq+mv+sdl+ sGV+f+ldpe+Gfk++
  CCG92186.1 125 EDVDVAVRSSANVEDLPLASFAGQQDTYLNIKGKANLLNAIKLCYASLYTERAIIYRKEMGYEHINISMSVGVQRMVRSDLACSGVMFTLDPESGFKKV 223
                 *************************************************************************************************** PP

      PPDK_N 198 vlinasyGlGeaVVaGrvtpdefvvekstrk.....ilekkigekeikivydekeeg......tkevevpeeereklaLsdeeveeLaeiakkiekhyg 285
                 +linasyGlGe++V+G vtpde+ v+kst       i++kk+g+k+ik+vyd ++e+      +k+v+vp e+r+k++Lsd+e+ +L ++a  ie+hy 
  CCG92186.1 224 ILINASYGLGENIVQGVVTPDEYCVFKSTLMkgykpIIQKKLGSKDIKLVYDIDGERlmkgtyVKNVPVPIEDRNKYVLSDSEILTLSRWACIIEEHYT 322
                 *****************************9999*******************9998777778899999******************************* PP

      PPDK_N 286 ......tpmdiEfaideeegklyllQaRpetrtsekkekka 320
                       tpmdiE+a+d+ +g+l++lQaRpet +  +++k++
  CCG92186.1 323 rknersTPMDIEWAKDGISGELFILQARPETIHRGQNKKTI 363
                 9******************************9988777654 PP

>> PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.0   0.0     6e-64   2.7e-60      19     290 ..     499     805 ..     487     809 .. 0.89

  Alignments for each domain:
  == domain 1  score: 204.0 bits;  conditional E-value: 6e-64
                      BCEEEEEESSCHHHHHHHHCTXSSEEEEEHHHHCTTSCC..HHHHHH..............................HHHHHHHHHHHTTTSEE CS
  PEP-utilizers_C  19 kikvlaNidtpedaekalengaeGiGLlRtEflfmaree..lpteee..............................qaeaykkvleamngrpv 80 
                      ++k+++N+++p++a      + +G+GL R Ef+ ++  +  + ++                                +ae +  +++a+ ++ v
       CCG92186.1 499 RTKIMMNVGNPHKAFDFSFLPNDGVGLARQEFILTNYVKvhPMALVHfdrlregpekmkirqltenypqktdyfvdkLAEGIGLIAAAFFPKDV 592
                      789*******************************9996632444444899******************************************** PP

                      EEEXXXSSCC..GGSGGC.HHHH.XSXGGGSSXTHHHHCCS..HHHHHHHHHHHHHHCC.CC..EEEEEESSXXSHHHHHHHHHHHHHHHHHHH CS
  PEP-utilizers_C  81 vvRtlDiggd..kelpel.keepeevNPmlGfRgirlglse..pelfetqlrAllrasa.ag..kleimlPmvasveeleeakkiieevkeele 166
                      +vR+ D++++   +l  + + ep e+NPmlGfRg +++ +   ++ f  +  Al++a++ +g  +++im+Pmv++v e    k++iee     e
       CCG92186.1 593 IVRLSDFKSNeySNLLGGtDFEPIERNPMLGFRGASRYYHPryQQGFALECLALKKAREtFGllNIKIMIPMVRTVTE---GKRVIEEL----E 679
                      *********955334333377899************999876699**************63367***********987...56677666....4 PP

                      HCTCTX.XTTXEEEEEEXSHHHHHTHHHHCTTSSEEEEXHHHHHHHHHTXXCCCHCHHHHSXTTTCHHCCCHHHHHHHHHHCCXEEEEESCCCC CS
  PEP-utilizers_C 167 kegvkk.kkkvkvGiMiEvpsaalladklakevdFfSiGtNDLtQytlavdRdneevaklydplepavlrlikevikaaeekglkvgiCGelag 259
                      k+g+++ ++++++ +M E+ps ++la+++++  d+fSiG+NDLtQ++l+vdRd+e +a lyd+ + av+rli+++i++a++++ k+giCGe+++
       CCG92186.1 680 KNGLRRgENGLEIFMMCEIPSNVILAEEFCEIFDGFSIGSNDLTQLVLGVDRDSEIIASLYDERNEAVKRLIASMIQIAKKNKRKIGICGEAPS 773
                      4444331789************************************************************************************ PP

                      .SCCCHHHHHHCTXSEEEEXGGGHHHHHHHHH CS
  PEP-utilizers_C 260 .dpsavellvglGldelSmsaasvpaaraala 290
                       ++  +e+l++ G+d++S++++s+  +  +++
       CCG92186.1 774 nYKDFLEFLIKEGIDSISVNPNSIYSTLLKAS 805
                      78999*******************98766655 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.1   1.5e-27   6.8e-24       2      73 .]     402     473 ..     401     473 .. 0.96

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 1.5e-27
                    --S-EEEEES---HHHHTTS-GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.HH--TEEEEEETTTT CS
  PEP-utilizers   2 leegvILvaeetspsdiagldkaaGivterGGmtSHaAivArelgiPaVvgvgeatielkegdlitvDgstG 73 
                    +++g++Lv e+t+p++ + ++kaa+ivt+rGG+t+HaAiv+relg+PaVvg+++at+ l++g  +tv +++G
     CCG92186.1 402 FQPGEVLVIEKTDPDWEPVIKKAAAIVTDRGGRTCHAAIVSRELGVPAVVGTENATKLLQNGSFVTVSCAEG 473
                    789*****************************************************888888******9998 PP

>> Phage_pRha  Phage regulatory protein Rha (Phage_pRha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0    0.0001      0.45      39      87 ..     351     400 ..     311     401 .. 0.79
   2 !    9.6   0.0    0.0003       1.3       2      44 ..     732     777 ..     731     789 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
  Phage_pRha  39 eseykdsng.retkvylltrdgftllvmgftgkkavefkaayidrFnele 87 
                  ++    ++ ++++vy+l  +g +l+  +  g+k+++ k+++i+  +++ 
  CCG92186.1 351 PETIHRGQNkKTIQVYQLKTKGKVLVEGKAVGEKIAQGKVRIIQDLQQMD 400
                 44444445548************************************997 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0003
  Phage_pRha   2 sSleiAelfgkrHknVlrdIrkliedleefgke...lnfeeseykd 44 
                 +S +iA l + r + V+r I ++i+ +++++++   +  + s+ykd
  CCG92186.1 732 DSEIIASLYDERNEAVKRLIASMIQIAKKNKRKigiCGEAPSNYKD 777
                 799***********************99999765553223666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 5704.93
//
Query:       CCG92187.1  [L=194]
Description: hypothetical protein MFUM_480004 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1178  (0.0657036); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1417.63
//
Query:       CCG92188.1  [L=413]
Description: Methane monooxygenase subunit alpha [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.9e-149  495.6   0.1   9.1e-149  495.4   0.1    1.0  1  Monooxygenase_B  Monooxygenase subunit B protein


Domain annotation for each model (and alignments):
>> Monooxygenase_B  Monooxygenase subunit B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  495.4   0.1  5.1e-153  9.1e-149       1     380 []      33     412 ..      33     412 .. 1.00

  Alignments for each domain:
  == domain 1  score: 495.4 bits;  conditional E-value: 5.1e-153
                      -SSSS-HHHHHSSEEEEEEEES-SEEETT-EEEEEEEEEE-TT--TTS--SSSEEEEEESSSTTEEEEEEEETTEE-SS-B---TT-EEEEEEE CS
  Monooxygenase_B   1 GeksqeaflrmrTiqfYDvkwskeevkvneeltitGkvhvledWPeavekpevsflnvgePgPvlvrkesvvngkfvprsvslelGedYefkvv 94 
                      Ge++qea+lrmrT qfYDv++s++++kv+e+l +tGkv++l+ WP+++ +++++++n++ePgP+lvrke+vvng++v++s+ ++lG++Y+fk v
       CCG92188.1  33 GERAQEAILRMRTAQFYDVRFSSNHLKVGEDLVVTGKVMILPIWPHELGFSGIAYINFFEPGPRLVRKETVVNGQPVFSSMIVKLGDTYDFKEV 126
                      9********************************************************************************************* PP

                      EEE-S-EEEEEEEEEEESSS-EEEEEEEEEEEES-GGG---EEE-TTS-EEETTTTTHHHHHHHHHHHHHHHHHHHHHHHSS--SHHHHHHHHS CS
  Monooxygenase_B  95 lkaRrpGtyhvhpmlnvedaGplvGpgkwvtiegdasdFtnpvklltGetvdletyglsrviawhllwlvlgvawllywvrrplflprllavea 188
                      l+aRrpGt++v++++n++d+Gp+vGp+ +vti+++   Ftn+v++l G+ ++le+yglsr+++w++lw++lg++wl+yw++ + + prl     
       CCG92188.1 127 LTARRPGTWPVGVTMNIKDIGPIVGPSIKVTIDPSSAPFTNTVQTLSGQSINLENYGLSRAMGWSFLWVLLGIGWLYYWLILKPTAPRLGLAYL 220
                      *********************************************************************************999********** PP

                      S-SSSSS-TTHHHHHHHHHHHHHHHHHHHHHHHCCSS---------B---------.--SEEEEEEEEEEESS-SEEEEEEEEEE-SSS-EEEE CS
  Monooxygenase_B 189 gkeeelitkkdrkvglvvlvlvllivlvgyavtekkypitvPlQaglkkieplplelkatvkvevekatykvpgralelklevtNkgdepvrlg 282
                      +ke+el+tk+d+k+g+++l++v+++v++g+ +t+k++pi++PlQ+++ +i+plp e +++v+++v+katy v++r+l+++l vtNkg+e+v+l+
       CCG92188.1 221 EKEDELVTKQDQKFGFLFLAIVIVLVFGGAFITSKQFPIVIPLQKTFVRINPLPKE-STFVEAKVSKATYYVQQRSLDFDLIVTNKGNEKVYLR 313
                      ********************************************************.************************************* PP

                      EEE-SS-EEE-TTT..----S---CCCEETT-EEES--S-B-TT-EEEEEEEEE-CHHHHTTGGGGGGSS--EEEEEEEEEETTS-EEEEEEEE CS
  Monooxygenase_B 283 efqtanvrflnpdv..keaesdypdellaeeglsvsdeepiapGetrtleveaqdaaweverLadliydadsrfgGLlffvdeegerqiseiag 374
                      +fqtanv+flnp++  +++ +d+p+  +++ +l+++++epi pGet++l+++aq+aaweverL+++++++ srfgGL+ff d+ g+r+i++ia+
       CCG92188.1 314 RFQTANVAFLNPAApdNQWPADSPE--VNGGELQITPNEPILPGETKQLHIKAQGAAWEVERLSTIYKESSSRFGGLIFFGDTAGNRNIIAIAD 405
                      **************99999******..******************************************************************* PP

                      E.-EEE- CS
  Monooxygenase_B 375 p.viPkF 380
                      + v+P+F
       CCG92188.1 406 QfVVPVF 412
                      *9***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2974.75
//
Query:       CCG92189.1  [L=249]
Description: Methane monooxygenase subunit beta [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.1e-105  350.5  13.4   5.8e-105  350.3  13.4    1.0  1  AMO       Ammonia monooxygenase


Domain annotation for each model (and alignments):
>> AMO  Ammonia monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.3  13.4  3.3e-109  5.8e-105       3     238 .]      12     247 ..      10     247 .. 0.99

  Alignments for each domain:
  == domain 1  score: 350.3 bits;  conditional E-value: 3.3e-109
                 -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSSSS-GGG--TTHHHHHHHHHHSHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTT CS
         AMO   3 skeealklsrkidlivlvilflvvlggyhihqmllaGdWdfWvdwkdrrlwpvvtpivsitfpaavqavlWekfrlplGatlcvlglllgeWlnryfnf 101
                  ++e l++ ++i+++++vi+ ++v++g++++q+ll+GdW+fW+dwkdrr++p++++i +++++++vqa++W+k+rlp+G+tlc++g++l++W++ry+n+
  CCG92189.1  12 LQKEGLEVGKRIQFVAWVIIGMTVTVGTFASQSLLEGDWSFWIDWKDRRYFPILGVISYMLMLVSVQAACWIKARLPMGMTLCAVGINLWQWFERYVNW 110
                 6899*********************************************************************************************** PP

                 TTTS---HHHH-----HHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHGGGG-EEEETTEEEEHHHHHHHHS-----------TTTTTTSS CS
         AMO 102 ygwtyfPvnlvfPstlipsalvldvvlllsksylltalvGglafgllfyPanWpllapfhlpveaegvllsladligfeyvrtgtPeyirlvekGtlrt 200
                 +gw+++P+n +fP+t+ip+a+++d+vllls+++llt+l+G++af+l+fyPanW+++apfh+p+ea g++lslad+igf+yvr+++Pey+r++e+Gtlrt
  CCG92189.1 111 WGWFSYPMNELFPETVIPCAIAADCVLLLSRKLLLTYLFGAYAFALTFYPANWVMIAPFHQPLEALGQTLSLADYIGFSYVRSAIPEYLRMIESGTLRT 209
                 *************************************************************************************************** PP

                 TTT---SCCCHHHHHHHCHCCCHHCCHHHHHHHHHB-X CS
         AMO 201 fgkdvvpvaaffsgfvsiliyllwwylGkvfstekyvk 238
                 f++++++ a+ffsg+v+i iy+++w++G++ +++++vk
  CCG92189.1 210 FEGGALGPAIFFSGVVGIFIYAIFWWIGDQCTRNRWVK 247
                 ************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1598.41
//
Query:       CCG92190.1  [L=287]
Description: Methane monooxygenase subunit gamma [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-97  325.7  24.5    1.8e-97  325.4  24.5    1.0  1  AmoC      Ammonia monooxygenase/methane monooxygenase, subuni
  ------ inclusion threshold ------
      0.088   13.5   2.4        0.2   12.4   2.4    1.6  1  DUF1691   Protein of unknown function (DUF1691)


Domain annotation for each model (and alignments):
>> AmoC  Ammonia monooxygenase/methane monooxygenase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.4  24.5    2e-101   1.8e-97       7     243 ..      19     256 ..      13     258 .. 0.97

  Alignments for each domain:
  == domain 1  score: 325.4 bits;  conditional E-value: 2e-101
        AmoC   7 aaaaekelldakalllglavllvfyvlvrlyervfayskGldsfspefqtyWmnlllvelvlevvaalvlvgylwkt.rdrnldkltpkeelkr.yltl 103
                   +++ke++++++++l+++++++fy +++ly+r+fa+skG+d++s++fqtyWmnl++  ++++v+++  ++g++w + rdr+l++l+p eelkr y+++
  CCG92190.1  19 ELVPKKEYFNNWRFYLYCILISLFYGACMLYQRAFAISKGIDYTSQDFQTYWMNLFWGITIMNVIIWGLTWGWIWFVyRDRHLEQLNPGEELKRwYSNW 117
                 456889*********************************************************************999****************999** PP

        AmoC 104 llwlvvyalavyWGasffteqdgtWhqtvirdtdftPshiiefylsyPiyiilgvaaflyaktrlPlfakglslpylvlvagplmilpnvglnewGhtf 202
                 l++l+vya+ ++W a+ff+eqdg+Wh+++irdt+ftPshi++fyls+Pi+i++gva +++++trlP++ k++ lp++++va+p+m++p +g newGh++
  CCG92190.1 118 LITLGVYAWCLVW-AVFFVEQDGVWHSSMIRDTEFTPSHIFNFYLSWPIFINFGVAGLMLTRTRLPVMGKKWLLPLVMEVAWPIMFIPLIGENEWGHSA 215
                 *************.************************************************************************************* PP

        AmoC 203 WfmeelfvaPLhwgfvvlgWaalavlGvalqvlarlsellk 243
                 W++ee+f+aPLhw+fv ++Waa+++lG+ +++++r++++lk
  CCG92190.1 216 WILEEWFAAPLHWTFVPFAWAAVWFLGNGFDMFPRIAAVLK 256
                 *************************************9987 PP

>> DUF1691  Protein of unknown function (DUF1691)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.4   2.2e-05       0.2      21      94 ..      55     130 ..      49     141 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.2e-05
     DUF1691  21 skvgllyvahglarspplslleyaaLvgsgvlHivsGlakwlgllrilkki...kkkkrrrrwliingiaaakaalg 94 
                 +++g++y ++ + +  ++ l++ + ++ ++++ +++G+++++   r l+++   ++ kr   +++i   + a   ++
  CCG92190.1  55 ISKGIDYTSQDF-QTYWMNLFWGITIMNVIIWGLTWGWIWFVYRDRHLEQLnpgEELKRWYSNWLITLGVYAWCLVW 130
                 678999******.999999********************55555577777777666666666666665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1902.67
//
Query:       CCG92191.1  [L=129]
Description: Lactoylglutathione lyase family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-13   50.4   0.0    3.3e-08   33.8   0.0    2.1  2  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
    5.5e-11   42.8   0.0    6.3e-11   42.6   0.0    1.0  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge


Domain annotation for each model (and alignments):
>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   3.7e-12   3.3e-08       2     109 .]       7     110 ..       6     110 .. 0.86
   2 !   20.8   0.1     4e-08   0.00035       1      58 [.      72     127 ..      72     129 .] 0.91

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 3.7e-12
                   EEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETTEEEEEEE.ESSTT-THHHTS-EEEEEEEEES-HHHHHHHHCTTTEEEEEEE CS
  Glyoxalase_4   2 QigivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgsvqieLie.plegpeflaehgeglhhlaywvddldaavarleeqGfevvqkg 97 
                   ++ + V +le+a+ +f + lG+++  r++++ ++ +l f+++ ++   +eL e p++g + +    + l hla+ v+dl+aa  ++++ G++++++ 
    CCG92191.1   7 HVRYRVSNLEKALFYFVNFLGLKEVGRITSP-RGSKLVFLQAPENGTLLELCEyPDSG-KVI--VPPDLTHLAFSVNDLEAARIKCKQMGWPFTDEI 99 
                   999************************9865.78899999999966888998834444.443..5899************************99975 PP

                   E-GGGTT-EEEE CS
  Glyoxalase_4  98 vragaagrrfay 109
                    ++ ++g++f++
    CCG92191.1 100 -QKAENGQYFTF 110
                   .55678999998 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 4e-08
                   EEEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETTEEEEEEEESST CS
  Glyoxalase_4   1 dQigivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgsvqieLiepleg 58 
                   +++++ V+Dleaa  ++++ +G+ ++++++  + +    f ++ +g  +ieLi+ +++
    CCG92191.1  72 THLAFSVNDLEAARIKCKQ-MGWPFTDEIQKAENGQYFTFIDAPDG-YEIELIQEDKK 127
                   59999************98.9**999***999999999*******9.8*****99876 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0     7e-15   6.3e-11       2     128 .]       5     121 ..       4     121 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 7e-15
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGE CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvk 100
                 + hv ++v++lek+l ++ + LG+k v ++   + +++l + +  ++g+ +el  ++  ++  ++          + ++a++v+d+++a  + k+ g +
  CCG92191.1   5 FLHVRYRVSNLEKALFYFVNFLGLKEVGRIT-SPRGSKLVFLQAPENGTLLELCEYPDSGKVIVPP--------DLTHLAFSVNDLEAARIKCKQMGWP 94 
                 57*****************************.8888999999999999999999999999999999........8************************ PP

                 EEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase 101 vvaepgrhyfgalysfyfrDpdGillei 128
                 +++e+++  +g+ ++f +  pdG+++e+
  CCG92191.1  95 FTDEIQKAENGQYFTF-IDAPDGYEIEL 121
                 **************99.*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 936.53
//
Query:       CCG92192.1  [L=191]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.024   14.9   0.1      0.076   13.2   0.1    1.7  1  Gluconate_2-dh3  Gluconate 2-dehydrogenase subunit 3
       0.05   13.1   1.4      0.096   12.2   0.3    2.0  2  KNOX2            KNOX2 domain
      0.071   13.1   0.3       0.41   10.6   0.2    2.4  1  SFTA2            Surfactant-associated protein 2


Domain annotation for each model (and alignments):
>> Gluconate_2-dh3  Gluconate 2-dehydrogenase subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.3e-05     0.076       3     136 .]      57     168 ..      55     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
  Gluconate_2-dh3   3 qaallaaladrIiPstdt.gpgakeagvaafidrqladaplppeqeayrkglaaldayaraeygksFveldgaqqdalLealekeaeakgtgea 95 
                      q++ l++  ++++P + +    a+ +  +++++   +++ + + +  +++ l+ l++ya++  +k+F  l+  + + ++++ e++ +       
       CCG92192.1  57 QQKNLQKFIAIVVPHQGEiFEKARNISYHNLLESWSTNTDSNK-KHKLEAYLDLLQKYAQELTKKDFYLLSLPDGTNIVKKTEDQ-K------- 141
                      6777888888888876556888888888888888888876666.88899999999999999999999999999999999988877.3....... PP

  Gluconate_2-dh3  96 leasaeahfFsllreltlegyftspigggnalgwrligfpG 136
                               F+ l++++l+ ++  + +      w+ ig+pG
       CCG92192.1 142 --------IFQDLLNQILSTFYNNKGV------WTAIGYPG 168
                      ........7999999999999999999......99999998 PP

>> KNOX2  KNOX2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       0.7   4.2e+03      36      44 ..      17      25 ..      14      28 .. 0.70
   2 ?   12.2   0.3   1.6e-05     0.096      12      28 ..     103     119 ..     101     120 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.7
       KNOX2 36 FlreieqqL 44
                F+ e +qqL
  CCG92192.1 17 FFVEKKQQL 25
                777777887 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.6e-05
       KNOX2  12 MeaYcdvLvkYkeeLtr 28 
                 +eaY+d+L kY +eLt+
  CCG92192.1 103 LEAYLDLLQKYAQELTK 119
                 79*************98 PP

>> SFTA2  Surfactant-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   6.8e-05      0.41      25      45 ..     114     134 ..      86     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.8e-05
       SFTA2  25 flelLeKlCllLhLPsGTnvT 45 
                 ++el +K  +lL LP GTn+ 
  CCG92192.1 114 AQELTKKDFYLLSLPDGTNIV 134
                 6888889999*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1208  (0.0673769); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 1545.72
//
Query:       CCG92193.1  [L=526]
Description: Glucose-methanol-choline (GMC) oxidoreductase:NAD binding subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-24   85.6   0.0    2.3e-23   83.3   0.0    2.2  2  GMC_oxred_C     GMC oxidoreductase
    1.7e-14   53.9   0.0    5.1e-14   52.3   0.0    1.8  1  GMC_oxred_N     GMC oxidoreductase
  ------ inclusion threshold ------
       0.14   11.0   0.0        0.2   10.5   0.0    1.1  1  Glyco_hydro_77  4-alpha-glucanotransferase
        0.2   10.9   0.0       0.37   10.0   0.0    1.3  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
       0.33   10.2   0.5        0.5    9.5   0.5    1.3  1  FAD_binding_3   FAD binding domain


Domain annotation for each model (and alignments):
>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.2   4.4e+03      57      97 ..     354     390 ..     327     392 .. 0.79
   2 !   83.3   0.0   6.4e-27   2.3e-23       4     143 ..     397     512 ..     394     513 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.2
                  EECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B- CS
  GMC_oxred_C  57 ltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMG 97 
                  l+pg++  t++a++   e l +++++    + H+ G    G
   CCG92193.1 354 LRPGPNTSTPQARALWGESLKNLMEN----YTHIAGMWIVG 390
                  67888888888888888877777776....77888876666 PP

  == domain 2  score: 83.3 bits;  conditional E-value: 6.4e-27
                  -EEEEEST..T-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-ST CS
  GMC_oxred_C   4 rGrvtlss..sdptgaplidpnylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGad 99 
                  ++ v+l +  +d  g+p++ +++ ++p+d+++  +a+k ar+i +aa           ga  e++d+  ++ +              H lGtcrMG++
   CCG92193.1 397 TNGVSLHKekKDRFGMPIPVITFNDHPNDKRMREYAWKRAREIYEAA-----------GA-IEVYDTPPYPAT--------------HNLGTCRMGNN 468
                  56778877779************************************...........33.667788899999..............*********** PP

                  CGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHH CS
  GMC_oxred_C 100 pkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAek 143
                  p++sV++s+++ h+v+nL++ D+S+fP+  + nptlti alA +
   CCG92193.1 469 PETSVTNSYGQCHEVKNLFISDGSLFPTGACENPTLTISALAIR 512
                  ******************************************86 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   1.4e-17   5.1e-14     111     295 ..     123     298 ..      30     299 .. 0.77

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 1.4e-17
  GMC_oxred_N 111 wssdevlpafkkvetaqalesdlhgvdgrlgvtekgkeespln...kallkaaeelGlp..........vprdlngk.hqcGvcllgvtcrtgarqst 194
                  ++++++lp+++k+e             + lgv+ +    +p n    ++ ++ae+lG++          +p d +   +qcG+c+ g  c   a++ +
   CCG92193.1 123 INYEDLLPYYEKAE-------------KALGVSGRVMPFQPGNtnfLVMKRGAEKLGIQatpgfmainsIPFDGRPPcDQCGFCFQG--CTIKAKWNV 205
                  3799**********.............88888777666655553237888**************99877666655445*********..********* PP

  GMC_oxred_N 195 arawLrpalerpnleiltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvdlp.vGknL 291
                    + +++a +  nl++  +++a +i   + +k+a +V + d++g+    + +ak++ va+ ++++  lL++S   k +h       +    + vGkn 
   CCG92193.1 206 LYEAIPKAEQTGNLDLRPQCQAIRIET-DSRKKASSVIYADSQGK--LHQLKAKVICVACNSIETARLLLNSESSKFPH------GLANGSGmVGKNY 294
                  *************************44.4899********99999..889999*******************8877777......5555666777777 PP

  GMC_oxred_N 292 qdHp 295
                    H+
   CCG92193.1 295 MRHL 298
                  7775 PP

>> Glyco_hydro_77  4-alpha-glucanotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.5e-05       0.2     307     370 ..     369     431 ..     332     439 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.5e-05
                     -HHHHHHHHHHHHHHCT-EEEE---SS--HHHHHHHHHTT-BEEEEGGGTTSTTTT.TTSGGGS CS
  Glyco_hydro_77 307 pgeelfevlkeelqkgkllviaEDLGvvpdevrelleelgilgmkvlqfafedeenefylphny 370
                      ge+l +++++  + + + +++EDL  +++ v+   e+ + +gm +  ++f+d+ n ++++++y
      CCG92193.1 369 WGESLKNLMENYTHIAGMWIVGEDLPQLTNGVSLHKEKKDRFGMPIPVITFNDHPN-DKRMREY 431
                     5678888999999889**********************************977754.5666655 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0001      0.37       2      32 ..      11      41 ..      10      69 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0001
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvele 32
                 dv+viG G++G ++ ++l  +g+kvt +e++
   CCG92193.1 11 DVCVIGTGAGGGNLIRELCLQGVKVTALEAG 41
                 7999999999999999999999999999743 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.5   0.00014       0.5       2      32 ..      10      40 ..       9      48 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00014
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   +dV+++G+G  G  l ++L+ +Gv+v+ +e 
     CCG92193.1 10 VDVCVIGTGAGGGNLIRELCLQGVKVTALEA 40
                   89************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.36
# Mc/sec: 4342.29
//
Query:       CCG92194.1  [L=463]
Description: Glycolate dehydrogenase subunit GlcD [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-68  230.4   0.0    3.9e-68  229.8   0.0    1.3  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    3.5e-38  130.5   0.0    5.1e-38  129.9   0.0    1.2  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.8   0.0   4.3e-72   3.9e-68       1     250 []     220     461 ..     220     461 .. 0.99

  Alignments for each domain:
  == domain 1  score: 229.8 bits;  conditional E-value: 4.3e-72
                    --SEEEEEEEEESSHHHHHHHHHHHHHHT---SEEEEE-HHHHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE. CS
  FAD-oxidase_C   1 lpearavalvafpsfeaavkavreiaqagiipaalelmdkkaldlveatkgakkglpdeeealllvefegddeeeaeeelealveaileatgaadv 96 
                    +p++r+v+l++fp++e a++a+++i++a++ip+ale++d+k+++++e++++a  g+p+e +a+ll+e +g   ++++ e++  + + l++ g  ++
     CCG92194.1 220 KPQERQVILASFPTLEVASEATSAIIKAALIPSALEFLDQKTIECIESYSPA--GFPKESQAVLLIESDGHP-QAVRDEIT-RISQVLKQYGPLEI 311
                    69**************************************************..******************.99999999.9************* PP

                    .........ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEEETTEEEEEEEEEEE..--TT--THHH CS
  FAD-oxidase_C  97 lvaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyglevvlfgHagdgnlhlyilfdladeaeeeraeklv 192
                    ++a++++++e+lw aRk a+     al+++ ++vl eD++vP+s la+++r+i+++ ++y +e+++++H+gdgnlh+ +l d+++++ +er+ +++
     CCG92194.1 312 RIAENPKQQEQLWSARKVAFS----ALARKAPTVLLEDVTVPRSSLAQMIRKIQQISKAYAVEIAVYAHMGDGNLHPVFLGDEKNKDLMERVFRAM 403
                    *********************....*********************************************************************** PP

                    HHHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT-- CS
  FAD-oxidase_C 193 devvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgkv 250
                    +e++  a++lgG+i+gEHGvGl+kk++l ++++ e+++l+++iK+ lDP+++LNPgk+
     CCG92194.1 404 KEIFLYAIKLGGTITGEHGVGLAKKEFLAYQYKSEEFQLLKNIKKILDPENLLNPGKI 461
                    ********************************************************96 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0   5.7e-42   5.1e-38       1     139 []      45     184 ..      45     184 .. 0.99

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 5.7e-42
                    EEEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTT CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsg 95 
                    p av++p+s+e++  +l++a+++++++l+rG+G+sl+g+av +++ +vl+++++n+ile d+ + t+ ve+G+t ++++e++a+  l+++++pgs+
     CCG92194.1  45 PLAVLFPSSIEDILWVLQWAKSNHACILPRGSGTSLSGAAVpQKNSIVLSMTKWNKILEADPYNLTLLVEPGITTQAVQEEAAKFSLFYPPDPGSY 140
                    789********************************************************************************************* PP

                    CGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEEE CS
  FAD_binding_4  96 ipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrls 139
                    + +t+GG++  n+gG +  kyG +r++vlg+evvl++G+v++l+
     CCG92194.1 141 KISTIGGNVGHNSGGIRGLKYGVTRNYVLGMEVVLPNGQVIWLG 184
                    *****************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.35
# Mc/sec: 3952.91
//
Query:       CCG92195.1  [L=443]
Description: Glycolate dehydrogenase, iron-sulfur subunit GlcF [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-26   90.3  15.6    1.8e-15   56.9   2.2    3.0  3  CCG       Cysteine-rich domain
    2.9e-12   46.9   4.6    2.9e-12   46.9   4.6    2.4  3  Fer4_8    4Fe-4S dicluster domain
    7.1e-11   42.5   5.9    7.1e-11   42.5   5.9    2.8  2  Fer4_17   4Fe-4S dicluster domain
      4e-09   36.9   5.5      4e-09   36.9   5.5    2.4  2  Fer4_7    4Fe-4S dicluster domain
    1.6e-05   25.7   4.2    1.6e-05   25.7   4.2    2.5  1  Fer4_16   4Fe-4S double cluster binding domain
    2.1e-05   24.6  19.5     0.0003   20.8  11.8    2.9  2  Fer4_10   4Fe-4S dicluster domain
    0.00027   20.9  18.5     0.0041   17.1   1.4    3.3  2  Fer4_2    4Fe-4S binding domain
    0.00072   19.6   7.8    0.00072   19.6   7.8    3.2  3  Fer4_21   4Fe-4S dicluster domain
    0.00089   19.4   8.2    0.00089   19.4   8.2    3.2  3  Fer4_9    4Fe-4S dicluster domain
     0.0087   15.8   3.3     0.0087   15.8   3.3    3.7  4  Fer4      4Fe-4S binding domain
  ------ inclusion threshold ------
      0.015   15.8  20.0      0.017   15.6   2.6    3.8  3  Fer4_4    4Fe-4S binding domain
      0.016   15.2   2.5      0.016   15.2   2.5    3.7  3  Fer4_6    4Fe-4S binding domain
       0.14   12.3   6.3        2.2    8.5   0.1    2.6  2  Fer4_18   4Fe-4S dicluster domain
       0.37   11.6   2.8        7.7    7.3   0.3    2.7  2  Fer4_15   4Fe-4S single cluster domain
        1.2   10.2  30.0          1   10.5   5.7    4.5  4  Fer4_3    4Fe-4S binding domain
        6.9    7.3   7.8         17    6.1   1.3    2.6  2  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I


Domain annotation for each model (and alignments):
>> CCG  Cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.8       3.1   3.5e+03      72      83 ..       4      15 ..       2      16 .. 0.84
   2 !   42.9   0.4   3.8e-14   4.3e-11       3      85 .]     181     262 ..     179     262 .. 0.96
   3 !   56.9   2.2   1.6e-18   1.8e-15       1      84 [.     313     397 ..     313     398 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.1
         CCG 72 aivtacpgCllq 83
                a+++ c +C + 
  CCG92195.1  4 AVIQKCIHCGMC 15
                6899*****985 PP

  == domain 2  score: 42.9 bits;  conditional E-value: 3.8e-14
         CCG   3 yfdgChllraaypevrkalkkllealgveleelekesCCGagggrsgkeelaealakrnvetaeetgadaivtacpgCllqlk 85 
                 + +gC +++   ++ ++ ++ +l  +g+e+  + ++ CCG+ + ++g+ e+ae+lak+ ++ +  ++ dai+t+++gC  +lk
  CCG92195.1 181 LLTGC-VQDLVFSKINRDTADVLLYNGCEVICPPEQGCCGSLHAHNGEMETAERLAKKLLAVFPIEELDAIITNSAGCGSHLK 262
                 678**.99999********************************************************************9985 PP

  == domain 3  score: 56.9 bits;  conditional E-value: 1.6e-18
         CCG   1 vayfdgChllraa..ypevrkalkkllealgveleelekesCCGagggrsgkee.laealakrnvetaeetgadaivtacpgCllql 84 
                 ++y+d Chl +++  + e+r +l  l++++++elee   + CCG++g++++ ++  a +l ++++e +++t+a +++ta+pgCll +
  CCG92195.1 313 ITYHDACHLCHGQkiKNEPRAILHSLPCVQFIELEES--DHCCGSAGIYNILQPeMAHKLLNKKIEKIKKTNASIVCTANPGCLLFI 397
                 69*********************************77..*************998999*************************9987 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   4.6   2.5e-15   2.9e-12       3      65 .]       7      74 ..       5      74 .. 0.83
   2 ?   -2.2   0.3       5.3   5.9e+03      57      62 ..     207     212 ..     204     241 .. 0.71
   3 ?   -2.4   0.0       6.1   6.8e+03      48      54 ..     316     322 ..     278     326 .. 0.71

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 2.5e-15
      Fer4_8  3 ekCieCgaCqsaCpvlrrtkkhlldargeaae.....dvqeeqvlee.....eealwsCttcgaCtevCpvgi 65
                +kCi+Cg+C  +Cp++++tk +++++rg+ +      +     ++++     ++ l+ C++c aC+++Cpvg+
  CCG92195.1  7 QKCIHCGMCLPSCPTYQETKIERNSPRGRISLmraiaE-----KRMDltasfAHELYFCLGCLACQTACPVGV 74
                79******************999******999654321.....222245678******************986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.3
      Fer4_8  57 CtevCp 62 
                 C++ Cp
  CCG92195.1 207 CEVICP 212
                 555555 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 6.1
      Fer4_8  48 lwsCttc 54 
                  ++C+ c
  CCG92195.1 316 HDACHLC 322
                 4455555 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   5.9   6.4e-14   7.1e-11       1      61 []       8      75 ..       8      75 .. 0.81
   2 ?   -2.2   0.3       5.9   6.6e+03      51      57 ..     206     212 ..     204     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 6.4e-14
     Fer4_17  1 rCiqCgyClpeCpsyeaydnepkkllraakl......glleeaeke.......ekaslCieCgeCerkCPqgld 61
                +Ci+Cg+Clp+Cp+y++++ e+++++ +++l      ++      +       ++   C++C  C+++CP g+d
  CCG92195.1  8 KCIHCGMCLPSCPTYQETKIERNSPRGRISLmraiaeKR------MdltasfaHELYFCLGCLACQTACPVGVD 75
                6**********************9999998865442222......2234456689***************9987 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.9
     Fer4_17  51 eCerkCP 57 
                 +Ce  CP
  CCG92195.1 206 GCEVICP 212
                 5777776 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   5.5   3.5e-12     4e-09       1      52 []       8      74 ..       8      74 .. 0.74
   2 ?   -1.4   0.5       3.4   3.8e+03       8      14 ..     207     213 ..     204     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 3.5e-12
      Fer4_7  1 rCigCgaCvaaCpvkaieldeeenekgt.........ekv......eidpekClgCgaCvavCPtga 52
                +Ci+Cg C + Cp++  +  e+++++g+         +++      +++   ClgC aC+++CP+g+
  CCG92195.1  8 KCIHCGMCLPSCPTYQETKIERNSPRGRislmraiaeKRMdltasfAHELYFCLGCLACQTACPVGV 74
                7************999999999999976555444433111333333556667*************96 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.4
      Fer4_7   8 CvaaCpv 14 
                 C++ Cp 
  CCG92195.1 207 CEVICPP 213
                 7888874 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   4.2   1.4e-08   1.6e-05       1      66 [.       8      72 ..       8      73 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.4e-08
     Fer4_16  1 rCgtCgkCaevCPtnaikekkekeiearecisyntaekkdlaedeekckkqeaitgCdiCqdvCPa 66
                +C+ Cg C+ +CPt   ++ ++++ + r +   + + +k++  ++   ++ + + gC +Cq++CP+
  CCG92195.1  8 KCIHCGMCLPSCPTYQETKIERNSPRGRISLM-RAIAEKRMDLTASFAHELYFCLGCLACQTACPV 72
                5*************886666444444444444.46666666666666666888************8 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8  11.8   2.7e-07    0.0003       7      56 .]       7      71 ..       4      71 .. 0.90
   2 !   16.5   0.9   6.1e-06    0.0069       8      23 ..      59      74 ..      52      96 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.7e-07
     Fer4_10  7 dtCirCgkCvkaCPadl...............tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56
                ++Ci+Cg C  +CP++                 +  a++  +  +   + ++ C gc aC+ aCP
  CCG92195.1  7 QKCIHCGMCLPSCPTYQetkiernsprgrislMRAIAEKRMDLTASFAHELYFCLGCLACQTACP 71
                59*************99*************8777777777777888888***************9 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 6.1e-06
     Fer4_10  8 tCirCgkCvkaCPadl 23
                 C++C +C++aCP+ +
  CCG92195.1 59 FCLGCLACQTACPVGV 74
                6*************44 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   3.4   4.2e-05     0.047       8      22 .]       7      21 ..       2      21 .. 0.91
   2 !   17.1   1.4   3.6e-06    0.0041       9      21 ..      59      71 ..      51      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.2e-05
      Fer4_2  8 drCigCgaCvsaCPa 22
                ++Ci+Cg C+ +CP+
  CCG92195.1  7 QKCIHCGMCLPSCPT 21
                69************7 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3.6e-06
      Fer4_2  9 rCigCgaCvsaCP 21
                 C+gC aC++aCP
  CCG92195.1 59 FCLGCLACQTACP 71
                7************ PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   7.8   6.4e-07   0.00072       6      53 ..       7      72 ..       4      76 .. 0.71
   2 ?   -3.4   1.1       9.9   1.1e+04      46      52 ..     206     212 ..     204     217 .. 0.72
   3 ?   -1.4   0.1       2.4   2.7e+03      38      47 ..     316     322 ..     303     326 .. 0.54

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.4e-07
     Fer4_21  6 dkCigCgkCliaCedtshqai.............eidaktvl......kvvedeCvGCnlCssvCPv 53
                +kCi+Cg Cl +C++   + i              i++k+ +      ++    C GC  C + CPv
  CCG92195.1  7 QKCIHCGMCLPSCPTYQETKIernsprgrislmrAIAEKR-MdltasfAHELYFCLGCLACQTACPV 72
                59************98888998877777777765233332.1233311444457************9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.9
     Fer4_21  46 lCssvCP 52 
                  C  +CP
  CCG92195.1 206 GCEVICP 212
                 5888898 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.4
     Fer4_21  38 edeCvGCnlC 47 
                 +d    C+lC
  CCG92195.1 316 HDA---CHLC 322
                 444...4444 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   8.2   7.9e-07   0.00089       1      49 [.       8      73 ..       8      75 .. 0.69
   2 !   10.4   2.0   0.00052      0.59       2      17 ..      60      75 ..      59      86 .. 0.78
   3 ?   -1.5   0.0       2.7     3e+03      34      40 ..     317     323 ..     298     342 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.9e-07
      Fer4_9  1 kCtgCgaCveaC....pagvvvedaaerkarlraase................eaCigCgaCveaCpkg 49
                kC+ Cg C ++C    +  + +e++++r +   + ++                  C+gC aC  aCp g
  CCG92195.1  8 KCIHCGMCLPSCptyqE--TKIERNSPRGRISLM-RAiaekrmdltasfahelYFCLGCLACQTACPVG 73
                7***********54431..233333333322222.22355888888889999978************87 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00052
      Fer4_9  2 CtgCgaCveaCpagvv 17
                C gC aC++aCp gv 
  CCG92195.1 60 CLGCLACQTACPVGVD 75
                8899999999998875 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.7
      Fer4_9  34 eaCigCg 40 
                 +aC+ C+
  CCG92195.1 317 DACHLCH 323
                 3677775 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   3.3   7.8e-06    0.0087       7      20 ..       8      21 ..       7      22 .. 0.95
   2 !   13.7   3.7   3.6e-05      0.04       8      22 ..      60      74 ..      58      75 .. 0.93
   3 ?   -1.7   1.6       2.8   3.1e+03      14      19 ..     207     212 ..     206     214 .. 0.91
   4 ?   -2.2   0.1       3.9   4.4e+03       6      11 ..     317     322 ..     314     323 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.8e-06
                TSSS-THHHHHSTT CS
        Fer4  7 kCigCGaCvevCPv 20
                kCi+CG C   CP+
  CCG92195.1  8 KCIHCGMCLPSCPT 21
                9************8 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.6e-05
                SSS-THHHHHSTTTE CS
        Fer4  8 CigCGaCvevCPvgA 22
                C gC aC  +CPvg+
  CCG92195.1 60 CLGCLACQTACPVGV 74
                *************95 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.8
                 HHHHST CS
        Fer4  14 CvevCP 19 
                 C+ +CP
  CCG92195.1 207 CEVICP 212
                 ****** PP

  == domain 4  score: -2.2 bits;  conditional E-value: 3.9
                 TTSSS- CS
        Fer4   6 ekCigC 11 
                 + C  C
  CCG92195.1 317 DACHLC 322
                 667777 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   2.6   1.6e-05     0.017       2      16 ..       7      21 ..       6      25 .. 0.92
   2 ?    9.7   1.0    0.0011       1.3       4      17 .]      60      73 ..      51      76 .. 0.94
   3 ?   -0.4   2.1       2.1   2.3e+03      10      15 ..     207     212 ..     205     222 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.6e-05
      Fer4_4  2 erCigCgsCvaaCPq 16
                ++Ci+Cg C  +CP+
  CCG92195.1  7 QKCIHCGMCLPSCPT 21
                79************6 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0011
      Fer4_4  4 CigCgsCvaaCPqg 17
                C+gC +C  aCP+g
  CCG92195.1 60 CLGCLACQTACPVG 73
                ************75 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2.1
      Fer4_4  10 CvaaCP 15 
                 C+ +CP
  CCG92195.1 207 CEVICP 212
                 9****9 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   2.5   1.5e-05     0.016       7      21 ..       7      21 ..       6      24 .. 0.91
   2 ?   10.4   3.4   0.00051      0.57       9      23 ..      60      74 ..      59      74 .. 0.94
   3 ?    0.5   1.8      0.65   7.3e+02      15      20 ..     207     212 ..     205     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-05
      Fer4_6  7 dkCigCgdCvrvCPe 21
                +kCi+Cg C   CP+
  CCG92195.1  7 QKCIHCGMCLPSCPT 21
                69************8 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00051
      Fer4_6  9 CigCgdCvrvCPega 23
                C+gC +C ++CP g+
  CCG92195.1 60 CLGCLACQTACPVGV 74
                ************985 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.65
      Fer4_6  15 CvrvCP 20 
                 C+++CP
  CCG92195.1 207 CEVICP 212
                 ****** PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   2.1     0.023        25      59      74 ..       7      22 ..       2      28 .. 0.81
   2 ?    8.5   0.1    0.0019       2.2      56      78 ..      55      77 ..      22      83 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.023
     Fer4_18 59 gdcidcescvkvcPtg 74
                 +ci+c++c+  cPt 
  CCG92195.1  7 QKCIHCGMCLPSCPTY 22
                5799999999999985 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0019
     Fer4_18 56 kgagdcidcescvkvcPtgidir 78
                ++   c+ c +c + cP+g+d +
  CCG92195.1 55 HELYFCLGCLACQTACPVGVDYK 77
                44556****************76 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.3    0.0069       7.7       7      23 ..       8      24 ..       6      35 .. 0.88
   2 ?    3.6   0.2     0.099   1.1e+02       8      29 ..      60      87 ..      58      97 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0069
     Fer4_15  7 aCigcglCvaeapevfe 23
                +Ci cg+C+  +p++ e
  CCG92195.1  8 KCIHCGMCLPSCPTYQE 24
                8************9866 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.099
     Fer4_15  8 CigcglCvaea......pevfeldedgl 29
                C gc +C +++      +++fe   +++
  CCG92195.1 60 CLGCLACQTACpvgvdyKTLFEASRQDI 87
                99*********76666666776666555 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.7    0.0009         1       1      13 [.       9      21 ..       9      22 .. 0.95
   2 ?    9.0   6.3    0.0026       2.9       1      14 [.      60      73 ..      60      74 .. 0.95
   3 ?    2.0   0.1      0.47   5.3e+02       7      13 ..     207     213 ..     199     216 .. 0.89
   4 ?   -0.4   0.3       2.7     3e+03       1       9 [.     319     342 ..     319     343 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0009
      Fer4_3  1 CtgCgaCvevCPv 13
                C++Cg C+ +CP+
  CCG92195.1  9 CIHCGMCLPSCPT 21
                ************6 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0026
      Fer4_3  1 CtgCgaCvevCPvg 14
                C+gC aC  +CPvg
  CCG92195.1 60 CLGCLACQTACPVG 73
                ************98 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.47
      Fer4_3   7 CvevCPv 13 
                 C++ CP+
  CCG92195.1 207 CEVICPP 213
                 ******6 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 2.7
      Fer4_3   1 CtgCg...............aCve 9  
                 C+ C                +Cv+
  CCG92195.1 319 CHLCHgqkikneprailhslPCVQ 342
                 888954677777776666666876 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   1.3     0.015        17       4      18 ..       7      21 ..       6      29 .. 0.89
   2 ?    4.1   0.7     0.061        69       6      17 ..      60      71 ..      58      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.015
     Fer4_13  4 dtCiacgaCvelaPd 18
                ++Ci cg C   +P 
  CCG92195.1  7 QKCIHCGMCLPSCPT 21
                58***********96 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.061
     Fer4_13  6 CiacgaCvelaP 17
                C +c aC  ++P
  CCG92195.1 60 CLGCLACQTACP 71
                9**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3513.42
//
Query:       CCG92196.1  [L=658]
Description: Transcriptional activator of acetoin/glycerol metabolism [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-61  206.4   0.0    3.3e-61  205.8   0.0    1.3  1  Sigma54_activat  Sigma-54 interaction domain
      6e-19   68.5   0.0    1.8e-18   67.0   0.0    1.9  1  Sigma54_activ_2  Sigma-54 interaction domain
    1.1e-10   41.1   0.1      2e-10   40.3   0.1    1.4  1  HTH_8            Bacterial regulatory protein, Fis family
    1.8e-06   27.5   0.0      0.001   18.5   0.0    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    6.6e-06   26.6   0.0    1.4e-05   25.5   0.0    1.6  1  AAA              ATPase family associated with various cellul
    2.8e-05   24.1   0.0      7e-05   22.8   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00025   20.8   0.1    0.00052   19.8   0.1    1.5  1  HTH_30           PucR C-terminal helix-turn-helix domain
    0.00028   20.6   0.0    0.00064   19.4   0.0    1.6  1  HTH_23           Homeodomain-like domain
    0.00042   20.3   0.0     0.0008   19.4   0.0    1.4  1  HTH_29           Winged helix-turn helix
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.029   14.5   0.0    1.6  1  HTH_28           Helix-turn-helix domain
      0.024   13.7   0.0      0.098   11.7   0.0    1.9  1  MCM              MCM P-loop domain
      0.037   13.5   0.0       0.07   12.6   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
      0.049   13.7   0.0       0.11   12.7   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
       0.07   13.3   0.0       0.15   12.3   0.0    1.5  1  HTH_17           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.8   0.0   2.6e-64   3.3e-61       1     168 []     337     505 ..     337     505 .. 0.98

  Alignments for each domain:
  == domain 1  score: 205.8 bits;  conditional E-value: 2.6e-64
                      ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE.HHHHHTT CS
  Sigma54_activat   1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk.Glfekad 93 
                      +ig+s+a+ +++e++k +a++dl+vl++Ge+GtGKe++a+ ih++s+r+++ f+a+ncaaip+el+ seLFG e G+FtG++ke + G+f  a+
       CCG92196.1 337 IIGKSPAFVSAMEEAKIAAQNDLPVLLLGETGTGKEIFAKFIHQNSRRAKETFLAINCAAIPKELVVSELFGFEGGTFTGSSKEGRkGKFLLAN 430
                      799*****************************************************************************9987655******* PP

                      TSEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEEE CS
  Sigma54_activat  94 gGtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnvieie 168
                      +Gt+fLDeigelple+Q  Llrvl+e e+ ++G++++i+vdvr+iaatn+dl+    +g fr+dL+yrln+++i+
       CCG92196.1 431 NGTIFLDEIGELPLEIQGTLLRVLEEFEIFPIGAKSPIPVDVRVIAATNKDLNLLSLQGAFRQDLFYRLNIFPIH 505
                      ***********************************************************************9985 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   1.4e-21   1.8e-18       1     138 []     338     509 ..     338     509 .. 0.90

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 1.4e-21
                      X---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-HHHHHHH........................TTT CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklpldlleq........................akg 70 
                      +g+s+a     e+ + aaq+ lpv+l+Ge G+gke++A+++h+ns +  e f  +++a++p++l+ +                        a++
       CCG92196.1 338 IGKSPAFVSAMEEAKIAAQNDLPVLLLGETGTGKEIFAKFIHQNSRRAKETFLAINCAAIPKELVVSelfgfeggtftgsskegrkgkfllANN 431
                      57888877778888999********************************************7777666666677777777777777777778** PP

                      SEEEEEE-TT--HHHHHHHHHHHHH...........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  71 gtLylkdiadlskaeqkeLlellak...........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      gt++l +i +l+ + q  Ll +l++             + ++r+++++ kdl+ l  +gaf + L+++L  + +h+PpL
       CCG92196.1 432 GTIFLDEIGELPLEIQGTLLRVLEEfeifpigakspI-PVDVRVIAATNKDLNLLSLQGAFRQDLFYRLNIFPIHLPPL 509
                      ********************************87543.89**************************************9 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1   1.5e-13     2e-10      13      42 .]     627     656 ..     621     656 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.5e-13
                 HHHHTTT-HHHHHHHHTS-HHHHHHHHHHT CS
       HTH_8  13 ALertgGnkskAArlLGisRrtLyrKLkkY 42 
                 ALe+tgGn skAA+lLG++R+tLyr Lkk+
  CCG92196.1 627 ALEKTGGNASKAAKLLGVHRSTLYRNLKKF 656
                 9***************************97 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0034       4.4      12      43 ..     348     379 ..     340     393 .. 0.89
   2 !   18.5   0.0   8.1e-07     0.001      91     157 ..     415     479 ..     410     481 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0034
  Mg_chelatase  12 kraleiaaaGgHnlllvGppGsGKtmlakrlp 43 
                    +  +iaa     +ll+G  G+GK + ak ++
    CCG92196.1 348 MEEAKIAAQNDLPVLLLGETGTGKEIFAKFIH 379
                   566789999999****************9876 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 8.1e-07
  Mg_chelatase  91 vGggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamN 157
                    G++++ ++G+  la+nG +fLDE+ e+  ++  +L + le+ e+    ak+    p ++ ++aa+N
    CCG92196.1 415 TGSSKEGRKGKFLLANNGTIFLDEIGELPLEIQGTLLRVLEEFEIFPIGAKS--PIPVDVRVIAATN 479
                   6888999**********************************99987655544..5588888888887 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.1e-08   1.4e-05       1     111 [.     361     480 ..     361     499 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.1e-08
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS.............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk.............yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeee 83 
                 vll G  GtGK ++ak + +++   + +fl i+++ + ++             + g s++  ++ f  a        +f+DEi +l  +          
  CCG92196.1 361 VLLLGETGTGKEIFAKFIHQNSrraKETFLAINCAAIPKElvvselfgfeggtFTGSSKEGRKGKFLLAN----NGTIFLDEIGELPLEI--------- 446
                 79*******************6333789******999866888886666666656666666666665553....477*********5555......... PP

                 HHHHHHHHHHHHTTTS........SSTEEEEEEESS CS
         AAA  84 rvvnqLlteldgvkkk........eskvivigatnr 111
                   + +Ll++l++++            +v vi+atn+
  CCG92196.1 447 --QGTLLRVLEEFEIFpigakspiPVDVRVIAATNK 480
                 ..**********************777********8 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   5.5e-08     7e-05       1     122 [.     360     480 ..     360     493 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.5e-08
                 EEEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--..........--------....G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik.ngttslvdsplvraar....egeilvlDEveraesevlnsLlslleerr 93 
                 +vlL+G++GtgK  +a+ + +   +++ +  +++    +++l+ +  +  +g+t    s+  r+++    +  +++lDE+ +++ e++++Ll++lee +
  CCG92196.1 360 PVLLLGETGTGKEIFAKFIHQNSrRAKETFLAINCAAIPKELVVSELFGfEGGTFTGSSKEGRKGKfllaNNGTIFLDEIGELPLEIQGTLLRVLEEFE 458
                 59***************999999744444444555556666666666667999999999999999999999999***********************99 PP

                 EE..-SSSEEE---......-EEEEEESS CS
       AAA_5  94 llleeggelvkaknddllerfrviatanp 122
                 + +   +  + ++       +rvia++n+
  CCG92196.1 459 IFPIGAKSPIPVD-------VRVIAATNK 480
                 9977777777665.......899999996 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   4.1e-07   0.00052      10      36 ..     630     656 ..     626     658 .] 0.90

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.1e-07
                 HTTT-HHHHHHHHTS-HHHHHHHHHHH CS
      HTH_30  10 enggnisatAkaLhvHrnTlryRLrri 36 
                 ++ggn+s++Ak L+vHr Tl+  L++ 
  CCG92196.1 630 KTGGNASKAAKLLGVHRSTLYRNLKKF 656
                 579******************999986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     5e-07   0.00064      16      41 ..     630     656 ..     618     658 .] 0.86

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5e-07
      HTH_23  16 e.GlsvreIAreLgvsrrTvyrwlkry 41 
                 + G + +++A++Lgv+r+T+yr lk++
  CCG92196.1 630 KtGGNASKAAKLLGVHRSTLYRNLKKF 656
                 46778899*****************99 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   6.3e-07    0.0008       8      37 ..     629     657 ..     627     658 .] 0.88

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 6.3e-07
      HTH_29   8 laeGvstvsqiAkllglsrrtvyrwlkrfe 37 
                  + G+ + s +Akllg++r+t yr lk f+
  CCG92196.1 629 EKTGG-NASKAAKLLGVHRSTLYRNLKKFH 657
                 56777.9********************996 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.2e-05     0.029      12      37 ..     632     657 ..     625     658 .] 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.2e-05
      HTH_28  12 GhsvreaArelgisrrtvyrWikrye 37 
                 G++++ aA++lg++r+t+yr +k++ 
  CCG92196.1 632 GGNASKAAKLLGVHRSTLYRNLKKFH 657
                 7799****************999985 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.7e-05     0.098      49     150 ..     350     459 ..     343     483 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.7e-05
                 SSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSS...HSSSEEEEESSSSSEEEEE.....THHHHTTTSEEEEESGGGSTCHHHH CS
         MCM  49 edktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaa...gLtaavvrdeetgefvlea.....GalvladkGvcciDefdkmkeedrs 139
                 e k+  + d  vll+g+ gt+K  + k++++++ ra  t  +   aa   +L+++     e g f+  +     G  +la++G + +De+ +   e + 
  CCG92196.1 350 EAKIAAQNDLPVLLLGETGTGKEIFAKFIHQNSRRAKETFLAINCAAipkELVVSELFGFEGGTFTGSSkegrkGKFLLANNGTIFLDEIGELPLEIQG 448
                 45677889999********************9999987766554443122777776666666665543222244999*************999999999 PP

                 HHHHHHHHSEE CS
         MCM 140 alhEamEqqti 150
                 +l+ ++E+ +i
  CCG92196.1 449 TLLRVLEEFEI 459
                 99999997655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.5e-05      0.07      29      71 ..     354     396 ..     345     406 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.5e-05
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkldkekylsltinfsa 71 
                   +n+ pvll G+tGtGK + +k + ++  + k ++l in+ a
  CCG92196.1 354 AAQNDLPVLLLGETGTGKEIFAKFIHQNSRRAKETFLAINCAA 396
                 678999***************9999999998998889888876 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.2e-05      0.11       6     105 ..     361     456 ..     357     476 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.2e-05
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-.HHHHTTS...........EEEEETGGG------------- CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgy.vgaeegG...........ivllDEidKihpkessgadvSr 92 
                 +lllg+tg+Gk++ ak + +  + + ++++  +++ ++ +    e +vs+l g + g  +g  ++G            ++lDEi               
  CCG92196.1 361 VLLLGETGTGKEIFAKFIHQNSR-RAKETFLAINCAAIPK----ELVVSELFGFEGGTfTGSSKEGrkgkfllanngTIFLDEIGELPL---------- 444
                 6899*******************.9***************....888999888777652566666677799999999********9999.......... PP

                 HHHHHHHHHHHH- CS
       AAA_2  93 egVqrdLLqileg 105
                  ++q  LL++le+
  CCG92196.1 445 -EIQGTLLRVLEE 456
                 .999999999997 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011      0.15       6      20 ..     637     651 ..     634     655 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
      HTH_17   6 EaAelLgvsrstvyr 20 
                  aA+lLgv+rst+yr
  CCG92196.1 637 KAAKLLGVHRSTLYR 651
                 69************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4843.19
//
Query:       CCG92197.1  [L=354]
Description: phospho-2-dehydro-3-deoxyheptonate aldolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-92  307.8   0.0    5.5e-92  307.5   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.5   0.0   3.1e-96   5.5e-92       8     273 ..      40     338 ..      25     340 .. 0.96

  Alignments for each domain:
  == domain 1  score: 307.5 bits;  conditional E-value: 3.1e-96
                   H..HHCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S.SSTTS-SHTTHHHTHHHHHHHHHHH............. CS
  DAHP_synth_1   8 a..adiliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKpRrstvgfkGlindpdlkilsrikkel............. 89 
                   +  + il+G+d+r+lv++GPCsi+dp+ a+eyA+rlk+++++++++l+i+mr+yfeKp r+tvg+kGlindp+l+++ +i+k+l             
    CCG92197.1  40 EiiQAILAGEDNRFLVVVGPCSIHDPKGAIEYAKRLKEIRKEVEKELFIVMRTYFEKP-RTTVGWKGLINDPELDGSCDIEKGLkiartilleivgm 135
                   255789****************************************************.9************************************* PP

                   T-EEEEEESSCCTHHHHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TT....HHHHHHHHHHHHHHHTTE.........EE--EEEEEEEE CS
  DAHP_synth_1  90 glpiatevldpisvqyladvvdiiqiGArttesqdllelasglskpvglKngtd....vaidemkaaaekilflgv.........etkgiilcergl 173
                   g+p+ate+ld  ++qy++d+v++ +iGArt esq ++e+asgls+pvg+Kngtd    +a+d++ aa  ++ flg+         +t+g+  ++++l
    CCG92197.1 136 GIPTATEFLDSTTPQYISDLVCWAAIGARTIESQYHREMASGLSMPVGFKNGTDgslqIALDALGAAMYPHSFLGIdeqgmtsiiRTTGNRWGHVIL 232
                   ************************************************************************************************* PP

                   EEST.SSSSSCHCHHHHHHHHHHCTSS.-EEEESCHHHTTCGGGGHHHHHHHHHHHHHTT...ESEEEEEBBSSCCC-SST.GGGGBBCTCBHHHHH CS
  DAHP_synth_1 174 rggk.ktnrdvedvaavkilkeetgkl.pvmvDvsHansrkdykrqkkvlklakaaiaaG...iaGvmiEshlnpgkalsd.gkqalkygksetdac 264
                   rgg+  tn+d e+++ +   ++e+g + ++m+D+sHan+ k+++ qk v  ++  +  +G   i+G m+Es+l +g+++++ + ++lkyg+s+td c
    CCG92197.1 233 RGGRtRTNYDPESIEDAVRRLKEAGLPpRLMIDCSHANCGKQHNIQKTVWYSILGQRIKGnlnIIGAMLESYLYEGNQKIPaDLSQLKYGVSITDPC 329
                   ****9***************99998779*************************99988888********************889************* PP

                   HHHHHHHHH CS
  DAHP_synth_1 265 ilkeltell 273
                   i++e+te l
    CCG92197.1 330 IGWEMTETL 338
                   ******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2686.77
//
Query:       CCG92198.1  [L=365]
Description: A/G-specific DNA glycosylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-15   57.6   0.0    2.8e-15   56.7   0.0    1.5  1  HhH-GPD        HhH-GPD superfamily base excision DNA repair p
      2e-07   30.9   0.1      6e-07   29.4   0.1    1.8  1  NUDIX_4        NUDIX domain
    1.3e-05   24.8   0.1    2.4e-05   23.9   0.1    1.5  1  HHH            Helix-hairpin-helix motif
  ------ inclusion threshold ------
      0.032   14.6   7.1      0.053   13.9   7.1    1.4  1  EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   6.2e-19   2.8e-15       1      94 [.      58     179 ..      58     193 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 6.2e-19
                 HHHHHHTTS-HHHHHHHHHHHHHHHSHCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF
     HhH-GPD   1 vsailsqqtsderanriierlferfgfptpedladadeekLrelirelGfyrrKakyikelArilv................................. 66 
                 vs+ + qqt+ +++ +++ +++erfg  + e+la+a+e ++ +++++lG+y  +a++++++A i+                                  
  CCG92198.1  58 VSEFMLQQTQAKTVIAYYLKWMERFG--DWEKLANASEGEVLKAWEGLGYY-ARARNLHKIAAIVFfekkgilpseptellklpgiglytanaiaslaf 153
                 7899********************98..***********************.*********************************************77 PP

                 S-SSS--TTSHHHHHHHHHHTTSSSSTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 gkpdvlivvDvhvrrilkrlrsikekkt 94 
                 gk  ++++ D +  r+l rl si++  +
  CCG92198.1 154 GK--KTVALDANGIRVLVRLLSIHQPIN 179
                 64..6899************99987544 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1   1.3e-10     6e-07       3     108 ..     256     351 ..     254     353 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.3e-10
                 EEEEECTEEEEEE--TT.SSSTT-EE-SEEE.-TTS-HHHHHHHHHHS-EEEEEEEEEEEEEETTEEEEEEEEEEEEE.S..---....EEEEEEGGGG CS
     NUDIX_4   3 llirddgrvllekRpek.gllggLwefPgge.eegeeleealareelgieveelepgtvkHvftHfrltltvylvrveegeeapa....elrwvtpeel 95 
                 +++r+++ ++l++  +k g  +g+w fP+ + ++ e+  +      +     +l p      ++++++ l+v ++++++++   +    +++w+++e++
  CCG92198.1 256 AILRKEDSIWLHQANSKtGRYQGMWLFPNFDpFAMEQ--K-----TIL---FSL-PAY----LSRYKIFLEVCEADWKQEKLV-QpnlsQGEWIKKEKI 338
                 577778*******999648*********955333222..1.....111...134.444....9*********99999844333.34799********** PP

                 GGS---CCCHCCH CS
     NUDIX_4  96 eeyalptavrkll 108
                 + ++lp+++rk++
  CCG92198.1 339 SFLPLPAPHRKIW 351
                 ************9 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   5.5e-09   2.4e-05       3      29 ..     124     150 ..     122     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 5.5e-09
                 HHHHTSSHHHHHTSTT-SHHHHHHHHH CS
         HHH   3 eglipasreeLlalPGVGpktAeaIls 29 
                 +g+ p  + eLl+lPG+G +tA+aI+s
  CCG92198.1 124 KGILPSEPTELLKLPGIGLYTANAIAS 150
                 567777788****************87 PP

>> EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   7.1   1.2e-05     0.053       1      17 []     216     232 ..     216     232 .. 0.98

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
  EndIII_4Fe-2S   1 CTARkPkCeaCPLaDlC 17 
                    C++  PkC +CPL ++C
     CCG92198.1 216 CKPLAPKCMICPLKEIC 232
                    999************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2614.81
//
Query:       CCG92199.1  [L=189]
Description: Ribonuclease HIII (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-17   64.0   0.0    1.9e-17   63.8   0.0    1.1  1  RNase_HII  Ribonuclease HII
    0.00093   19.3   0.0     0.0019   18.3   0.0    1.5  1  DUF3378    Domain of unknown function (DUF3378)


Domain annotation for each model (and alignments):
>> RNase_HII  Ribonuclease HII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   2.1e-21   1.9e-17       1     110 [.      50     163 ..      50     179 .. 0.75

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 2.1e-21
                 EEEEEE-TT-SBS-EEEEEEEECGHHHHHHHCTTGTTGTTS-HHHH.HHHHHHHHSEEEEEEE-HHHHH....HHTTTS-HHHHHHHHHHHHHHHHHHT CS
   RNase_HII   1 iGiDEaGrGpvlGplvvaavavekereeelkklgvkDSKkLskqkr.eeLaklikkkiekrklvaeeiky...aseneinlneikaaltlavikllekl 95 
                 +GiDE G+G+++Gplv+aav+v+++ ++ ++++g+kDSK  s+ +r ++La++ikkk++++ l++  ++y    +++  nln + a +++ v k+   +
  CCG92199.1  50 VGIDECGKGDLFGPLVIAAVFVDPQSAKDFTEMGIKDSKRISSIRRlNQLASAIKKKTKYALLSLPPLRYnelYEKKFKNLNLLLAWAHAWVYKKPSLE 148
                 6*****************************************9887579*******************9954333333455555555554444443333 PP

                 CEECCECCCE--SSH CS
   RNase_HII  96 gvkvdeilvdgvttp 110
                       +l d +++p
  CCG92199.1 149 LNDAPRVLCDRFAQP 163
                 333336666666665 PP

>> DUF3378  Domain of unknown function (DUF3378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.1e-07    0.0019      41      60 ..       2      21 ..       1      33 [. 0.83

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.1e-07
     DUF3378 41 ItaYtSgKVlFQGknaeaeA 60
                + +Y+SgKVl+QGk+a + +
  CCG92199.1  2 VQVYKSGKVLVQGKEALEFS 21
                789***********997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1499.08
//
Query:       CCG92200.1  [L=46]
Description: hypothetical protein MFUM_480017 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      166  (0.00925874); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 353.05
//
Query:       CCG92201.1  [L=47]
Description: hypothetical protein MFUM_480018 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 353.19
//
Query:       CCG92202.1  [L=251]
Description: putative Transcriptional regulator, Crp/Fnr family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-14   52.1   0.0    9.3e-14   51.3   0.0    1.5  1  cNMP_binding  Cyclic nucleotide-binding domain
    4.6e-10   39.3   0.2    1.1e-09   38.1   0.2    1.7  1  HTH_Crp_2     Crp-like helix-turn-helix domain
     0.0026   17.6   0.1      0.011   15.6   0.1    2.0  2  MarR_2        MarR family
  ------ inclusion threshold ------
      0.013   15.1   0.4      0.046   13.3   0.2    2.0  2  HTH_24        Winged helix-turn-helix DNA-binding
      0.015   15.2   0.3       0.83    9.6   0.1    3.1  3  MarR          MarR family
      0.024   14.1   0.2      0.039   13.4   0.2    1.3  1  RepL          Firmicute plasmid replication protein (RepL)
      0.029   14.2   0.0      0.057   13.2   0.0    1.5  1  HTH_23        Homeodomain-like domain
      0.034   13.8   0.1       0.08   12.6   0.1    1.6  1  Crp           Bacterial regulatory proteins, crp family
      0.043   14.2   0.2       0.18   12.2   0.1    2.0  2  Rrf2          Transcriptional regulator
      0.075   12.7   0.1       0.13   11.9   0.1    1.3  1  RP-C          Replication protein C N-terminal domain
      0.099   12.7   0.3         18    5.5   0.1    2.6  2  HTH_20        Helix-turn-helix domain
       0.12   12.6   0.3       0.33   11.2   0.1    1.9  2  Rota_NS6      Rotavirus non-structural protein 6


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   6.2e-17   9.3e-14       3      88 ..      59     143 ..      57     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 6.2e-17
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqq 88 
                    +++++++fr+ +p+ ++yi + G++ vyrl+++gke+ ++++ p + f+e  l+  + ++a++ A+  s++l +++ dfl+l+++
    CCG92202.1  59 FLEKDQILFREKQPVLGFYIMICGSIMVYRLTSEGKEQPIHIFYPPESFAEACLVS-DGYPANAKAVISSQVLLITKTDFLNLIRN 143
                   689************************************************88887.78************************986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.2   7.4e-13   1.1e-09      16      66 ..     193     245 ..     176     247 .. 0.76

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 7.4e-13
                 C.EEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ETEEEEES-HHHHH CS
   HTH_Crp_2  16 g.eielpltqeelAsmlGltretvsrilseLkreglis.rgrririldleaLr 66 
                 +  + l l ++ +A+ lG+t et+sril++L +e+li+   +ri++l+ e+L 
  CCG92202.1 193 SaIVPLLLPKKIIAAELGITSETLSRILAKLTNEQLIRnETKRIIVLSKEKLL 245
                 246788899*****************************53345*******996 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.6   3.8e+03      37      48 ..     154     165 ..     153     165 .. 0.84
   2 !   15.6   0.1   7.6e-06     0.011      27      54 ..     205     232 ..     201     235 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHT CS
      MarR_2  37 avsrilkrLvaa 48 
                 ++s++l++Lv++
  CCG92202.1 154 SMSNHLRKLVDK 165
                 68999****985 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 7.6e-06
                 HHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  27 larrlglsksavsrilkrLvaaGLverr 54 
                 +a++lg++  ++sril++L    L++ +
  CCG92202.1 205 IAAELGITSETLSRILAKLTNEQLIRNE 232
                 9***********************9866 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.5   2.2e+03      34      44 ..     155     165 ..     152     165 .. 0.79
   2 ?   13.3   0.2   3.1e-05     0.046      21      48 .]     203     230 ..     200     230 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.5
      HTH_24  34 vnrrlkrLeee 44 
                  + +l++L+++
  CCG92202.1 155 MSNHLRKLVDK 165
                 5789****986 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.1e-05
      HTH_24  21 reLAerlglSpstvnrrlkrLeeeGlIk 48 
                 + +A +lg+++ t++r l +L++e lI+
  CCG92202.1 203 KIIAAELGITSETLSRILAKLTNEQLIR 230
                 569*********************9996 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.4     6e+02      40      52 ..      15      27 ..      12      28 .. 0.88
   2 ?    0.2   0.0      0.48   7.2e+02      32      44 ..     153     165 ..     136     165 .. 0.89
   3 ?    9.6   0.1   0.00055      0.83      23      48 ..     205     230 ..     201     234 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.4
                HHHHTTSEEEEEE CS
        MarR 40 rLekkGlieRsks 52
                ++ekk ++++ +s
  CCG92202.1 15 KMEKKQFCSKARS 27
                8*******99876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.48
                 HHHHHHHHHHHHT CS
        MarR  32 stvtrvldrLekk 44 
                 +++++ l++L++k
  CCG92202.1 153 GSMSNHLRKLVDK 165
                 7899999999986 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00055
                 HHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  23 LakklgvskstvtrvldrLekkGlie 48 
                 +a  lg+++ t++r+l +L  + li+
  CCG92202.1 205 IAAELGITSETLSRILAKLTNEQLIR 230
                 8999*******************998 PP

>> RepL  Firmicute plasmid replication protein (RepL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   2.6e-05     0.039      42     122 ..     158     246 ..     151     250 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.6e-05
        RepL  42 wienliatldliG..nkktrlvyylidnlnsnnt......liatnRelaeetgislktvsetlkileeanilkkkanGvlvinPdllfk 122
                 ++++l++ ld +   +  tr ++++ +  + +        l+  ++ +a e gi  +t s+ l  l + ++++ +++ ++v+  + l+k
  CCG92202.1 158 HLRKLVDKLDSLSvkDAETRFIQWIHKHFHDDHLssaivpLLLPKKIIAAELGITSETLSRILAKLTNEQLIRNETKRIIVLSKEKLLK 246
                 5789999999765115689******9999855422222336678999**********************************99998887 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.8e-05     0.057      18      45 ..     200     227 ..     190     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-05
      HTH_23  18 lsvreIAreLgvsrrTvyrwlkryreeG 45 
                 l+++ IA+eLg++  T++r+l +  +e+
  CCG92202.1 200 LPKKIIAAELGITSETLSRILAKLTNEQ 227
                 57888****************9986666 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   5.4e-05      0.08       8      32 .]     205     229 ..     204     229 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.4e-05
                 HHHHHTS-HHHHHHHHHHHHHTTSE CS
         Crp   8 IAdylGlTrETVSRlLtrLrekGLI 32 
                 IA  lG T ET SR L +L  + LI
  CCG92202.1 205 IAAELGITSETLSRILAKLTNEQLI 229
                 56669**************999988 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.5   3.7e+03      37      50 ..     154     167 ..     142     170 .. 0.69
   2 ?   12.2   0.1   0.00012      0.18      29      57 ..     203     231 ..     197     233 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.5
                 S-HHHHHHHHHHHH CS
        Rrf2  37 ispsylekilakLr 50 
                    ++l+k++ kL 
  CCG92202.1 154 SMSNHLRKLVDKLD 167
                 45678888888875 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00012
                 HHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        Rrf2  29 eeiaerqnispsylekilakLrkaglvks 57 
                 + ia++ +i  + l++ilakL+++ l++ 
  CCG92202.1 203 KIIAAELGITSETLSRILAKLTNEQLIRN 231
                 67************************985 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   8.4e-05      0.13      30     101 ..     159     229 ..     146     234 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.4e-05
        RP-C  30 lralkeakaalgvsdralavLdaLlsftpeddlseearlivfpsNaqLsralglsestlrrhlaaLveaGli 101
                 lr+l      l v+d++++ ++++ +  ++d+ls+   ++  p  + ++ +lg++++tl+r+la+L +  li
  CCG92202.1 159 LRKLVDKLDSLSVKDAETRFIQWIHKHFHDDHLSSAIVPLLLPK-KIIAAELGITSETLSRILAKLTNEQLI 229
                 66777777899***********************9999999996.4567*****************998887 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.025        38      40      50 ..     154     164 ..     149     171 .. 0.89
   2 ?    5.5   0.1     0.012        18      30      58 ..     205     233 ..     204     235 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.025
                 HHHHHHHHHHH CS
      HTH_20  40 tlsyHLrvLee 50 
                 ++s+HLr+L++
  CCG92202.1 154 SMSNHLRKLVD 164
                 79*******87 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.012
                 HHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20  30 laerldlskntlsyHLrvLeeagLvevvr 58 
                 +a++l+++  tls+ L++L    L++ ++
  CCG92202.1 205 IAAELGITSETLSRILAKLTNEQLIRNET 233
                 899****************9988888665 PP

>> Rota_NS6  Rotavirus non-structural protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00022      0.33      53      85 ..     162     194 ..     143     201 .. 0.84
   2 ?   -2.9   0.0       5.4   8.1e+03      36      53 ..     215     232 ..     209     241 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
    Rota_NS6  53 pvfrldrmqlrqmqtlaclwihqhnhdlqvmsd 85 
                  v +ld + +++ +t    wih+h hd ++ s 
  CCG92202.1 162 LVDKLDSLSVKDAETRFIQWIHKHFHDDHLSSA 194
                 57799**********************876554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.4
    Rota_NS6  36 slqrildhlillqtihsp 53 
                 +l ril +l   q i   
  CCG92202.1 215 TLSRILAKLTNEQLIRNE 232
                 678888888777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1898.01
//
Query:       CCG92203.1  [L=160]
Description: Heme/copper-type cytochrome oxidase, subunit 2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-08   33.6   0.1    4.4e-08   33.0   0.1    1.2  1  COX2          Cytochrome C oxidase subunit II, periplasmic do
    0.00031   20.8   0.0    0.00053   20.1   0.0    1.4  1  Cupredoxin_1  Cupredoxin-like domain
  ------ inclusion threshold ------
       0.19   11.5   0.8         13    5.5   0.0    2.1  2  CbtA          Probable cobalt transporter subunit (CbtA)


Domain annotation for each model (and alignments):
>> COX2  Cytochrome C oxidase subunit II, periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1   7.4e-12   4.4e-08      47     114 ..      87     154 ..      75     159 .. 0.94

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 7.4e-12
        COX2  47 rvvlpvetkirllvtaedvlhsfavpslgvkvdavpGrlnqvsllidreGvfyGqcselcGvnhssmp 114
                 ++ +p+++ +r+  t+ d+ h f + +  v +  +pG ++ +s   ++ G +   c e cG++h +m 
  CCG92203.1  87 NIEIPINSLVRIKATSLDLQHGFYIAATPVNIMLIPGEISVTSYKFKKAGSYRIICNEYCGMLHHAMT 154
                 5779************************************************************9996 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   8.8e-08   0.00053      19     102 ..      70     157 ..      53     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 8.8e-08
  Cupredoxin_1  19 aektveitvkdggfePskievkagekvklkiknkdktpeefesedlgeekvlapgktttitiaplkpGeYeftcd....mhmd.akGkl 102
                   +e + +i+++  +f+P +ie++ +  v++k +  d   + f++    ++  l pg+ ++   + +k+G+Y+++c     m    + G +
    CCG92203.1  70 KEYELVIVAQAWAFNPTNIEIPINSLVRIKATSLDL-QHGFYIAATPVNIMLIPGEISVTSYKFKKAGSYRIICNeycgMLHHaMTGII 157
                   566778888899*************77777777765.4999999999999********999999********99875444334456655 PP

>> CbtA  Probable cobalt transporter subunit (CbtA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2    0.0043        26     143     163 ..       5      25 ..       2      36 .. 0.82
   2 ?    5.5   0.0    0.0021        13     185     229 ..      74     119 ..      67     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0043
        CbtA 143 aRqalylatvalsavalalav 163
                 +R +l++atv+l++++la+++
  CCG92203.1   5 ERIYLWIATVMLGIFMLAIIY 25 
                 688999999999998887764 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0021
        CbtA 185 lvlvavallalPhvveaPqpeaae..sgfpaallaqFrvaslltqav 229
                 lv+va a++  P+ +e+P        ++++ +l++ F +a++ ++++
  CCG92203.1  74 LVIVAQAWAFNPTNIEIPINS-LVriKATSLDLQHGFYIAATPVNIM 119
                 799***************754.44589*************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1191.07
//
Query:       CCG92204.1  [L=561]
Description: Heme/copper-type cytochrome oxidase, subunit 1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-76  258.5  49.8    1.1e-76  258.5  49.8    2.0  2  COX1      Cytochrome C and Quinol oxidase polypeptide I


Domain annotation for each model (and alignments):
>> COX1  Cytochrome C and Quinol oxidase polypeptide I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.5  49.8   6.1e-81   1.1e-76       3     431 ..      28     476 ..      26     477 .. 0.87
   2 !    1.9   1.5    0.0044        79     110     173 ..     460     545 ..     453     555 .. 0.51

  Alignments for each domain:
  == domain 1  score: 258.5 bits;  conditional E-value: 6.1e-81
                 HHHHHHHHHHHHHHHHHHHHHHHHHCT.......CT-HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSS-S-HHHHHHHHH.HHHHHHHHH CS
        COX1   3 gllylilalvlllvggllgllirlqla.......fpdletynqlrtlHgnlmiflfatpfilgfgnylvplllgardlafprlnalsfw.lvvlgvvll 93 
                 +l ++++++  l++g++lgll+++++a       +p l++y+  +tlHg+l  f+f +++  gf  + + + lg r+ ++     +s+  l++++++ +
  CCG92204.1  28 ILGMILVGFGSLALGVFLGLLQAFNYAgvglyqfLPGLKSYYHGLTLHGVLNGFVFPFAASNGFLSLTTIRSLGLRMPSSL--LLFSLLsLFLGTALSI 124
                 5668999*******************744443335799**********************999999999999999977776..4566662455555556 PP

                 HHHHHCSS-STTTTTTTC.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCGS-HHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHCT-SSSC CS
        COX1  94 llsllgaattgwteYaplsevdlwllglllvvvssllgainfivtilkrrapgmtvaklplfvwavlatailillalpvlalalllllldrslgkffsp 192
                    l+g+ ++++t+Y+p+ +++ ++lg++++vvs+++ ++  ++t+ k++++++   ++pl+++a + t+i++ ++ ++ +++ l+ ll++sl +++  
  CCG92204.1 125 YGILFGNSAVLYTFYVPMRAHWSFYLGIAFLVVSTWAISLAQLITLRKWKKNHP-TDRIPLLAYASILTYIMWDISSIGATVEDLFFLLPWSL-NLLPG 221
                 66666*********************************************9999.667**********************************9.46666 PP

                 E-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHCCCCGGGGTTTS.SS-HHHHHHHHHHHHHTHHHHHH...... CS
        COX1 193 gdplldqhlfWffgHpeVyililpalgivyyilpkfagrplfsyklsvlafililflsflvwaHHlftt.glpewlkalgsvfslliavPsgl...... 284
                  d++l ++lfWf+gHp+Vy+++lp+++ +y+ lp ++g ++fs+++++  f+++l+l  +v++HH++ + g+  + k+ ++v+++ ia Ps++      
  CCG92204.1 222 SDATLTRTLFWFTGHPIVYFWLLPVYVSWYFCLPAQVGGKVFSDQMVRSVFVAFLILV-PVGFHHQYSDpGIGLFYKWAAAVLTFGIAFPSLVtafsvv 319
                 ****************************************************999986.5*********************************555555 PP

                 .............CCCHHHHCCTTS-CHCHHHHHHH.HHHHHHHHHHHHHHHHHTSHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH.S CS
        COX1 285 .............kvfnwlatlwrgsirfktpmlff.lgfavlfiigGltGvllalpsvnyvvhntywvvaHfHlvllgavvfllfaaiyyllpklt.g 368
                              ++f+w+  l      +k+p +++ +++++ f+ gG+tG+++a++++++++hnt + ++HfHl++  av++ l+++ y+l+p l  +
  CCG92204.1 320 ysleigglsrggkGIFGWVKRL-----PWKDPSVCAqILAGIAFLPGGMTGIMHASVNMDLLLHNTSFLPGHFHLTVGAAVALSLVGIAYWLVPYLLrK 413
                 5555555555555555555555.....55666666614455666*****************************************************88 PP

                 B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHBSSSST--SCCCCHHHCHHHHHHHHHHHH CS
        COX1 369 rmlserlaklhfwllfiGlvlmflpmhilGllgmprraadyksfletvpelqplnvlrtiggv 431
                 +++   +a+++ w++f+G+++++  ++  G+lgmprr+a     +e +p ++   +l ++gg 
  CCG92204.1 414 KLWGSSIARWQPWIYFVGVLVFSSGQMSGGVLGMPRRTALALIPYEPLPGWKIAGILTAVGGS 476
                 899************************************422234568888888888888875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.0044
                 TC.....SHHHHHHHHHHHHHHHHHHHHHHHHHHHH....................HHHHTT-CCGS-HHHHHHHHHHHHHHHHCHHH CS
        COX1 110 pls....evdlwllglllvvvssllgainfivtilk....................rrapgmtvaklplfvwavlatailillalpvl 173
                 pl     ++ l  +g  l+ +s+l++++ +++ti+                      + p++ +   ++  w +l++a++++l+ p+l
  CCG92204.1 460 PLPgwkiAGILTAVGGSLMFLSFLIFFLVMVMTIFFgqkerepvdiplgqvihgpsLNGPQLIFD--KISYWVLLCFALIAFLYGPFL 545
                 55545554555566666666777778888888888865544444444443333322222222222..333444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3800.51
//
Query:       CCG92205.1  [L=43]
Description: hypothetical protein MFUM_480022 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 334.35
//
Query:       CCG92206.1  [L=71]
Description: hypothetical protein MFUM_480023 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 582.37
//
Query:       CCG92207.1  [L=50]
Description: hypothetical protein MFUM_480024 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       115  (0.00641419); expected 358.6 (0.02)
Passed bias filter:                       91  (0.00507558); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 411.85
//
Query:       CCG92208.1  [L=61]
Description: hypothetical protein MFUM_480025 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 467.10
//
Query:       CCG92209.1  [L=105]
Description: membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.012   15.8   0.4      0.023   14.9   0.4    1.4  1  DUF1324   Protein of unknown function (DUF1324)


Domain annotation for each model (and alignments):
>> DUF1324  Protein of unknown function (DUF1324)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.4   1.3e-06     0.023       2      21 ..      41      60 ..      40      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-06
     DUF1324  2 kctlvfqsrfcifPltfkss 21
                 ct+vfq++f  f l+f s+
  CCG92209.1 41 SCTIVFQAKFLAFSLAFGSA 60
                7****************885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 896.83
//
Query:       CCG92210.1  [L=53]
Description: hypothetical protein MFUM_480028 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 414.23
//
Query:       CCG92211.1  [L=211]
Description: hypothetical protein MFUM_490002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   15.7   2.2      0.023   15.1   2.2    1.4  1  SMI1_KNR4  SMI1 / KNR4 family (SUKH-1)


Domain annotation for each model (and alignments):
>> SMI1_KNR4  SMI1 / KNR4 family (SUKH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   2.2   1.3e-06     0.023       8     100 ..      65     164 ..      58     198 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.3e-06
                 HHHHHHHTS---HHHHHHHHHHTSEEEEETTSEEETTEEEEEE-THHHHS.......HHHCCCHHHHHHCHHCC...............SSTTEEEEEE CS
   SMI1_KNR4   8 qefekdlgikLPndyreflkltnGgelfgesnglifglkllsldeieeereesrssseeladdkekkkiprqra...............lphgwipfat 91 
                 ++f +++g+ +P+ y++fl   nG +++ ++         ++ +++  e+  s+++ eel  ++e+  ip +r+               +++++++f++
  CCG92211.1  65 RQFREEFGVPIPEFYKKFLAFSNGFRSDLYT------FFHIPDEDSPVEWLKSEEHDEELYFINEDFLIPHNRYyrvlkwddeeakemfFNPNYFIFGQ 157
                 5799********************5555555......22233333555555666666555444444445555555555555555566658889999988 PP

                 ETTCEEEEC CS
   SMI1_KNR4  92 dgggnyici 100
                     n++ i
  CCG92211.1 158 --HRNFLEI 164
                 ..4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1525.69
//
Query:       CCG92212.1  [L=41]
Description: hypothetical protein MFUM_490003 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       181  (0.0100954); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 321.25
//
Query:       CCG92213.1  [L=398]
Description: Formate dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-48  162.2   0.0    1.1e-47  161.6   0.0    1.2  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
      4e-16   58.9   0.0    5.8e-16   58.4   0.0    1.1  1  2-Hacid_dh    D-isomer specific 2-hydroxyacid dehydrogenase, 


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.6   0.0   1.3e-51   1.1e-47       1     177 [.     156     334 ..     156     335 .. 0.98

  Alignments for each domain:
  == domain 1  score: 161.6 bits;  conditional E-value: 1.3e-51
                   HHHHHHHHTTHHHHHHHHHTTCC.HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHHHH-SEE CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregew.ksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv.sleellaesDiv 95 
                   ++++l+l+r+   a+e+  +g w  ++ a++ ++l+g+ vG + +GrIG av +rlk+f++++ ++dr++ + e e+elgv+++ ++  ++ ++D++
    CCG92213.1 156 VMMILSLVRNYLPAHEWAVKGGWnIADCAVRAYDLEGMHVGTVAAGRIGLAVLRRLKPFDVHLHYTDRHRLPPEIERELGVTYHpDVYSMVPHCDVI 252
                   689********************888999*********************************************9******8888************ PP

                   EE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS- CS
  2-Hacid_dh_C  96 slhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHi 177
                   ++++pl+p+t+hl+n++ ++k+k+g++++NtaRG+++d++a+++a+ksgkia++a Dv+ ++p+p+d+p++++p   +tPH 
    CCG92213.1 253 TINCPLHPSTEHLFNDQLIEKCKRGVFIVNTARGKICDRDAVVRAVKSGKIAAYAGDVWFPQPPPSDHPWRTMPYNGMTPHY 334
                   *********************************************************************************7 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   6.4e-20   5.8e-16      14     129 ..      63     362 ..      59     366 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 6.4e-20
                 HHHHTTEEEEEES..CSSHHHCHHHHTTESEEEE-TTS..-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH...... CS
                 xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...... RF
  2-Hacid_dh  14 llkeegvevevkd..ellteellekakdadalivrsnt..kvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt...... 102
                 +l+e g+e+ v++  + ++    ++++ ad++i        +t + ++++++Lk+  +ag+G D+vD++aa e Gi+V++v +++++svAE++      
  CCG92213.1  63 YLEELGHEFIVTSdkDGPNSVFEKELPTADVVISQPFWpaYLTPDRIKKAKNLKLAITAGIGSDHVDIQAAIEAGITVAEVTYSNSISVAEHVvmmils 161
                 566633444444445777778888999999999877665579********************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  CCG92213.1 162 lvrnylpahewavkggwniadcavraydlegmhvgtvaagriglavlrrlkpfdvhlhytdrhrlppeierelgvtyhpdvysmvphcdvitincplhp 260
                 *************************************************************************************************** PP

                 ...........................................................................T-BHHHHHHHHHHHHHHHHHHHTT CS
                 ...........................................................................xxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ...........................................................................aaTeeaqeniaeeaaenlvaflkg 126
                                                                                            + T  aq + a+ + e l+ f++g
  CCG92213.1 261 stehlfndqliekckrgvfivntargkicdrdavvravksgkiaayagdvwfpqpppsdhpwrtmpyngmtphysGTTLSAQARYAAGTREILECFFEG 359
                 **************************************************************************999***********99999999999 PP

                 CCG CS
                 xxx RF
  2-Hacid_dh 127 esp 129
                 ++ 
  CCG92213.1 360 RPI 362
                 765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2921.47
//
Query:       CCG92214.1  [L=372]
Description: Uptake hydrogenase small subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-32  109.6   5.5    7.1e-32  109.6   5.5    2.1  2  NiFe_hyd_SSU_C  NiFe/NiFeSe hydrogenase small subunit C-termi
    2.8e-28   98.4   0.5    4.3e-28   97.8   0.5    1.3  1  Oxidored_q6     NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> NiFe_hyd_SSU_C  NiFe/NiFeSe hydrogenase small subunit C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2       0.5   4.4e+03      61      70 ..      60      69 ..      55      77 .. 0.73
   2 !  109.6   5.5   7.9e-36   7.1e-32       1      79 [.     228     309 ..     228     310 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.5
                    TS----TTST CS
  NiFe_hyd_SSU_C 61 gapCigCtep 70
                    g  C+ C+e 
      CCG92214.1 60 GLECTCCSES 69
                    6789988875 PP

  == domain 2  score: 109.6 bits;  conditional E-value: 7.9e-36
                     HSSBCGGC-TTHHHHHHT-B-SSTTSH....TSBSGGGT--GGG-BSSTTTC-BTTTTB-TTTTTS----TTSTTGGGGSSST CS
  NiFe_hyd_SSU_C   1 ygktihdnCerreyfdagefaeefgde....egClyklGCkGpvtyadcpkrkwnegvswpvkagapCigCtepgfpdkkspf 79 
                     y+++ihd+C+rr++fdag+f+e+++de    ++Clyk+GC+Gp+ty++c++++wn+gvs+p++ag++CigC+e gf+d + pf
      CCG92214.1 228 YSQRIHDKCYRRGHFDAGQFVEKWDDEgakkGYCLYKVGCRGPTTYNACSTTRWNGGVSFPIQAGHGCIGCSEDGFWD-NGPF 309
                     89****************************9**********************************************9.5555 PP

>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.5   4.7e-32   4.3e-28       1     130 [.      63     208 ..      63     209 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 4.7e-32
                  -SHHHHHH.T-TTTTHHHHH.HTEEEEEETTT-S--HHH......HHHTHTTTSEEEEEESBE...E.........EEHHHHHHHHGGGSSEEEEESH CS
  Oxidored_q6   1 CtGcsisl.laleedlldll.elielryhetlladskee......eieakekeadvlvveGavtrkp.........kealellkelaekakaviavGt 81 
                  Ct+cs+s+ ++ ++ + d++ ++i+l+y etl+a+s+ +      e+ +++k++++l veG  ++k          k+++e+l+ +a++akavia+G+
   CCG92214.1  63 CTCCSESFiRSGHPLVKDVIlSMISLDYDETLMAASGWQaekslkETVENYKGKYLLAVEGNPPTKEngmfcivggKPFIEQLRWAAKDAKAVIAWGS 160
                  *************************************88*****98889999***********88779****************************** PP

                  HHHH-TGGGSTT-TEE-HHHHHHHC.S-E.EEE-SSS--HHHHHHHHHH CS
  Oxidored_q6  82 CAafGGipaaannpsvgeevgellevvpvdinipGCPphpeailetlla 130
                  CA++G+++aa++np+  + ++++ +++p+ i +pGCPp +e +++++++
   CCG92214.1 161 CASNGCVQAAKPNPTGATPIHKIIQDKPI-IRVPGCPPIAEVMTGIITY 208
                  **************55455889*******.**************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2512.11
//
Query:       CCG92215.1  [L=599]
Description: Uptake hydrogenase large subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.1e-227  755.0   0.0   4.7e-227  754.8   0.0    1.0  1  NiFeSe_Hases  Nickel-dependent hydrogenase


Domain annotation for each model (and alignments):
>> NiFeSe_Hases  Nickel-dependent hydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  754.8   0.0  2.6e-231  4.7e-227       1     505 []      55     584 ..      55     584 .. 0.99

  Alignments for each domain:
  == domain 1  score: 754.8 bits;  conditional E-value: 2.6e-231
                   --HHHHTTTS-GGGHHHHHHTT-SSSTTHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTS-THGGGGS-HHHHHHHHH CS
  NiFeSe_Hases   1 RGlElilkgrdprdawalvqRiCGVCttvHalasvravedAlgikipknarlirnliaaalllhdhivhFYhLhalDwvdvvsalkadpkkaaelaq 97 
                   RG+Eli+kgrdprd+wa++qRiCGVCt vHalasvravedAlgi+ip+na++irn+++ a++++dh+vhFYhLhalDw+dvv alkad k+++e+aq
    CCG92215.1  55 RGIELIVKGRDPRDVWAFTQRICGVCTGVHALASVRAVEDALGITIPDNANCIRNIMHLAQMVQDHLVHFYHLHALDWIDVVCALKADSKATSEIAQ 151
                   9************************************************************************************************ PP

                   HHSTSSB-SHHHHHHHHHHHHHHHHTT--GGGTT-TTT-TT--S-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSSS--.EBTTBESSGBGS... CS
  NiFeSe_Hases  98 slskwpkssaeelkavqeklkkfvesgqlgifangYwghpayklppeanliavahYLeaLelqrkaakivaifggknPhpqslvvGGvtcaidl... 191
                   ++s++pkss+++++++q++ k+fvesgqlg+f+ngYwghpayklp+e+nl+a++hYLeaL++qr+++ki+++fggknPhp+ ++vGGv+cai++   
    CCG92215.1 152 KISSYPKSSPGYFSDIQNRFKQFVESGQLGLFKNGYWGHPAYKLPAEVNLLALSHYLEALDFQRQIVKIHTVFGGKNPHPN-WLVGGVPCAINIdet 247
                   *********************************************************************************.*************** PP

                   ......BSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGCS--GGGGT-EEEEEEEESSTT-STTGGEEEEEEEESTTETTSEBEE-...T CS
  NiFeSe_Hases 192 ......lnaerlaevkslikevkefveevylpDvlaiakaYkdwakigkglgkknflsvgefpeekseelkeslllpsGvilngdlskveevd...e 279
                         +n+++l+ v+s+i++  efve+vylpD+lai+++Ykdw  +g+gl++kn+ls+ge+pe++ ++++ +l++p+G+ilngdl++++evd   +
    CCG92215.1 248 mgagapVNMSQLNLVSSIIDRSIEFVETVYLPDILAIGSFYKDW-LYGGGLSSKNVLSYGEIPEQAGDHSSANLCFPRGAILNGDLKNIHEVDprdS 343
                   ********************************************.57889999***********999887899*******************76669 PP

                   TTEEEE-TTSSBS....TS-B-GGG---EB---...........EEE--TTSB-BSS-EEEETTB--BESHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  NiFeSe_Hases 280 ekitEevkhswYk....ekslhplegetepkyt...........leeldeegkYswikaPrykgkamevGplarvlvayakgkeevkelvdkllkkl 361
                   ++i+E+v hswYk    ++s+hp+eg tep +            +++lde+gkYswikaPr+kg++mevGplar+l++ya+g+ee+kel+++ l++l
    CCG92215.1 344 SQIQEYVFHSWYKypdpAESRHPWEGITEPYFVlgpntkgsgttIQQLDEQGKYSWIKAPRFKGEPMEVGPLARFLIGYASGREEFKELIERSLRQL 440
                   9*************998888**********888***********99*************************************************** PP

                   T-HGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTB---B--TT-SGGGS-SEEEEEEEEEETTEEEEEEEEEETTEEEEEEEE-HHHHH CS
  NiFeSe_Hases 362 glkvealfstlGRtaaRaleakliaellkewldelvenikkgdtetaneekldkkevpkeakGvglveapRGaLsHwikikdgkienYqavvPsTWn 458
                   +l++ealfstlGRt+aRalea+l+a+llk+++++l +ni++g+t+ta+++k+d++++p + kGvglveapRGaL+Hwi+ikdgkienYqavvP+TWn
    CCG92215.1 441 ELPLEALFSTLGRTLARALEASLCAKLLKRFYQRLLTNIQSGQTATADTSKWDPARWPIQSKGVGLVEAPRGALGHWIRIKDGKIENYQAVVPTTWN 537
                   **********************************************************99************************************* PP

                   H--S-TT----HHHHHHTT-B-SSTTS-HHHHHHHHHT--BHHHHH- CS
  NiFeSe_Hases 459 asPrdakgqkgayEaaLigtpvadpekPleilrtihSfDPClACavH 505
                    sPrd kg++ga+Ea+L++tp+a+pe+Pleilr++hSfDPClAC++H
    CCG92215.1 538 GSPRDPKGKMGAFEASLLNTPLAKPEEPLEILRILHSFDPCLACSTH 584
                   **********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 4800.91
//
Query:       CCG92216.1  [L=231]
Description: Ni,Fe-hydrogenase I cytochrome b subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-26   90.6  19.2      1e-25   90.4  19.2    1.0  1  Ni_hydr_CYTB  Prokaryotic cytochrome b561
    0.00057   20.4  26.5      0.006   17.1  15.2    2.5  2  DUF4405       Domain of unknown function (DUF4405)


Domain annotation for each model (and alignments):
>> Ni_hydr_CYTB  Prokaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4  19.2   1.1e-29     1e-25       2     182 .]      17     222 ..      16     222 .. 0.94

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 1.1e-29
                   ----TTHHHHHHHHHHHHHHHHHHHHHS------S-GGG-.....HHHHHHHHHHHHHHHHHHHHHHH...........------------STTTSS CS
  Ni_hydr_CYTB   2 yslvarllHWlnallvvllllsgllianlhprlywgdsgk.....aralHklaGlvllalllfrllwl...........kkakkpspriifrqikrd 82 
                   y +++rl+HW+na+++++l+lsg++ia+++ +   +++g+     +r +H++a+l++ + l++r++w+             + +++ +++ +  k +
    CCG92216.1  17 YEAPLRLWHWINAASIFVLALSGYFIAHPPQSIGGEAFGHynfafIRYVHFVAALLFDVGLMIRIYWAlagnrfgrdflLLPLFDRFWWAEVLKKIK 113
                   899*******************************999999****99999***************************999999999999999999*** PP

                   SSS----------------TTTHHHHHHHHHHHHHHHHHHHTHHHHHHHH............HTS-THHHHHHH.HHHHHHHHHHHHHHHHHHHHHH CS
  Ni_hydr_CYTB  83 ltlllrgrkpeagknnplqklvhlllyvllvvliltGlllsfaatagfpll.........lddkggaqlarelHellaaallafvvlHiaaallhgp 170
                   ++l+l +++ ++ + +pl++l+ +++++l  ++ +tGl+l+   + g++ +         l+ +g  q +++ H+l ++++++f++lH++ ++++ +
    CCG92216.1 114 WYLFLEKEPIKYVGADPLNRLATFFVFLLDWFMLITGLALFGE-MDGMGTWayylftiwvLPIFGSSQNLHTFHHLGMWVFVIFILLHVYVVIREDI 209
                   ****************************************763.4444444577888999************************************* PP

                   ---X.XXXXXXXX CS
  Ni_hydr_CYTB 171 vkkd.tlrrMitg 182
                   +++  +++ Mi+g
    CCG92216.1 210 LGRVsVIETMING 222
                   ***********97 PP

>> DUF4405  Domain of unknown function (DUF4405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   2.7   0.00017       1.6       7      56 ..      29      75 ..      23      83 .. 0.75
   2 !   17.1  15.2   6.7e-07     0.006       3      64 ..     136     203 ..     134     205 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00017
     DUF4405  7 llsflvlaiSGillsfavlpsgrgaywaflglskhqwrdiHeilgllfli 56
                + s++vla+SG  +     p+ +++++af + +  ++r +H++++llf +
  CCG92216.1 29 AASIFVLALSGYFIAH---PPQSIGGEAFGHYNFAFIRYVHFVAALLFDV 75
                67999*********93...55555555533336678***********955 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 6.7e-07
     DUF4405   3 dlllllsflvlaiSGillsfavlpsgrgaywa......flgl..skhqwrdiHeilgllflilvvlHlgl 64 
                 +++++l+  +++i+G+ l+     +g g +++       l++  s++ ++ +H++ +++f+i+++lH+++
  CCG92216.1 136 TFFVFLLDWFMLITGLALFGE--MDGMGTWAYylftiwVLPIfgSSQNLHTFHHLGMWVFVIFILLHVYV 203
                 5667777779*********99..445555555679887666699************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1652.62
//
Query:       CCG92217.1  [L=237]
Description: putative HupH hydrogenase expression protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-40  136.0   0.0    6.2e-34  116.2   0.0    2.1  2  HupH_C    HupH hydrogenase expression protein, C-terminal con


Domain annotation for each model (and alignments):
>> HupH_C  HupH hydrogenase expression protein, C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.1e-07    0.0019       7     101 ..      12      97 ..       8     101 .. 0.86
   2 !  116.2   0.0   3.4e-38   6.2e-34       1     116 [.     118     233 ..     118     235 .. 0.98

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHHHHHHHH---EEEEGGGS---HHHHHHHHHHH---SEEEEEE---EEEEEE-SSTTEEEEEEE-TTS-EEEEEEEESSS-GGGS--H CS
      HupH_C   7 ilaEiaealkalrpgeeahvinLtllPlseeDlelLdevLGegevtilsrgygncritetavrgvWrvryfnsedklildtlevakvPevalaaa 101
                 +l+ i     + ++g+e+  i L+    ++ D++ +++ L  gev+i++       i et++ g+W v   n+     l+ lev ++P+v+l ++
  CCG92217.1  12 LLEKIFYSFLKAKSGKESEKISLS----TPTDIKSVANFLSVGEVEITIDEPFPLLIFETQILGLWAVCLSNQ-----LQWLEVGQLPSVLLKTQ 97 
                 666777777777788888888886....89****************************************998.....78899999999988765 PP

  == domain 2  score: 116.2 bits;  conditional E-value: 3.4e-38
                 ..TCCHHHHHHHHHHHHHHHH---EEEEGGGS---HHHHHHHHHHH---SEEEEEE---EEEEEE-SSTTEEEEEEE-TTS-EEEEEEEESSS-GGGS- CS
      HupH_C   1 vmnapailaEiaealkalrpgeeahvinLtllPlseeDlelLdevLGegevtilsrgygncritetavrgvWrvryfnsedklildtlevakvPevala 99 
                 +mn+p++l Ei++ + +++ +++++vi+L+llPls +D+e+L+++LG g+  i+++gyg c i++++++++W++++fns++k +l+++e+ +vP++++a
  CCG92217.1 118 LMNSPYLLVEINRLATDYEIEKKPQVIQLSLLPLSLKDKEFLESTLGLGKTLIRIKGYGDCLIKNSQYKNIWWIEHFNSAGKSLLQAIEIDEVPAIVKA 216
                 69************************************************************************************************* PP

                 -HHHHHHHHHHH..... CS
      HupH_C 100 aaeDladsaerleelle 116
                 a+eDl+ s+ r+++l +
  CCG92217.1 217 AREDLDGSILRIQKLQQ 233
                 ***********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1751.09
//
Query:       CCG92218.1  [L=344]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2543.82
//
Query:       CCG92219.1  [L=629]
Description: Cation transport ATPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-35  120.1   0.9      1e-34  119.6   0.1    1.6  2  E1-E2_ATPase  E1-E2 ATPase
    7.4e-26   91.7   0.0    1.3e-25   90.9   0.0    1.4  1  Hydrolase     haloacid dehalogenase-like hydrolase
    0.00033   20.5   0.4      0.001   18.9   0.3    1.8  2  Hydrolase_3   haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       1.3   7.9e+03     120     160 ..      24      65 ..      11      73 .. 0.55
   2 !  119.6   0.1   1.7e-38     1e-34       4     181 .]     134     303 ..     131     303 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.3
                   HHHHHHHHHHHHHHHHS-STTTSSTTHHHHH.HHHHHHHHS- CS
  E1-E2_ATPase 120 kvlvpvvlliallvflialllgkslaeallr.alallvaaiP 160
                   + +++ +++ +++ +++ +ll+ ++++a l  +++  ++ iP
    CCG92219.1  24 ELIALSSFFSIIAYVVLRYLLKLDPFFATLPlFFSYGIGGIP 65 
                   444444455555555555555555555555445555555555 PP

  == domain 2  score: 119.6 bits;  conditional E-value: 1.7e-38
                   --EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTT CS
  E1-E2_ATPase   4 pptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkiarl 100
                   p+ a+  r+g++++id ke+  G  +++ ++++ paDg+++eg++ +des LTGE  +++k+ g++v sG+++ +  ++++V++  ed++++ki+++
    CCG92219.1 134 PTVAHQKRNGSIKDIDLKEVIEGIELIIYPHEICPADGVVIEGKTVMDESYLTGEPFMISKTVGSTVLSGAINGNSAIRIRVLRKPEDSRYAKIMEV 230
                   6677777****************************************************************************************** PP

                   S--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT CS
  E1-E2_ATPase 101 veeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrlakk 181
                   +++++++k+++ + ++++g++++p++++ia ++ ++          + lr+l+++v+a+Pc L la+p+a++ +++ +a++
    CCG92219.1 231 IRKSEEAKPRIRRLAEQIGAFYTPLSIFIATVAGMVS--------GSPLRFLSVMVIATPCPLLLAIPVAILGSISLCARR 303
                   *********************************9998........899************************999999885 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0   2.2e-29   1.3e-25       2     209 ..     320     530 ..     319     531 .. 0.79

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 2.2e-29
                 SEEEEESBTTTBCHH.HHHHHHHHHH.....CHHHHHHHHHHHHCHHHHHH.HHHHHHH..HHHHHHHHHETTTE...HHHHTHHHHHHHH.HCHHHHH CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxx.xxxxxxx..xxxxxxxxxxxxxx...xxxxxxxxxxxxx.xxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttge.psvedvivsa.....alalaaaletgsehpigkal.vaaakar..sgaltgfatfigrg...ayaigkpewltal.dippdlg 87 
                  t +fDk+GTLt g  + ve+ + s        +l a le  s+hp+++a+ ++aa++     +l+++++ +g+g    + + +++ +++    ++  g
  CCG92219.1 320 QTAIFDKTGTLTYGMpKLVEESYSSFfeprfVFDLVASLERYSKHPLAAAVlQKAAEKKieFMELSEVHEPPGKGlcgLFRKMSVRITARSkLSSDIKG 418
                 589************545555555557777777888888888*********76666666777778*****99999998555555544444431222233 PP

                 HHHHHHHHHCHHHHHH.TTHHHHHHHHHHTHHBHTTHHHHHHHHHHT.TE.EEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES.STTTSHHHHHHH CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
   Hydrolase  88 aaigsaqsqgrtvall.qaralavftiadplkvkpeaaeavasLkaa.gi.evvlltgdnpetaeraanqlGddyfdaviasdiet.vakpspegkvaa 182
                  +    +s+g + ++l +  + a f + d   +++e + ++a+L a+ g+ +v +++gd ++ +  +a+q+G           ++t  a  spe+k+++
  CCG92219.1 419 LEQMPRESEGLECVVLiDEVYAATFRFRDA--PREESKPFIAHLSAKhGFkKVLIVSGDRESEVSYLAKQVG-----------VSTlYAQCSPEQKLEI 504
                 33334445555555556779999*******..******************99********************...........9999************ PP

                 HHHHTSTGGGEEEEESSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 183 ireLqgkpeevamVGDgvnDaaalaaA 209
                 ++    + +++++VGDg+nDa+a+ aA
  CCG92219.1 505 VKNE-TSQAKTLFVGDGINDAPAMLAA 530
                 ***9.67779*************9887 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.57   3.4e+03      32      59 ..     467     494 ..     452     496 .. 0.83
   2 !   18.9   0.3   1.7e-07     0.001     202     246 ..     510     554 ..     504     559 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.57
                  SEEEEE-SS-HHHHHHHHHHCCCCSEEE CS
  Hydrolase_3  32 ikvviATGRslravlpvleelgldlpvi 59 
                   kv i +G   ++v+++++++g+++ + 
   CCG92219.1 467 KKVLIVSGDRESEVSYLAKQVGVSTLYA 494
                  479999**999********999987665 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1.7e-07
                  -GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--G CS
  Hydrolase_3 202 sleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksn 246
                  s+++++ +GDg ND + + aa +g+A+g+ se   +aA+ v+  n
   CCG92219.1 510 SQAKTLFVGDGINDAPAMLAATVGIAVGSNSEPTTEAAKIVIMEN 554
                  7899************************************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4640.55
//
Query:       CCG92220.1  [L=95]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-06   28.4   1.3    1.5e-05   25.1   1.3    2.0  2  DUF1640       Protein of unknown function (DUF1640)
  ------ inclusion threshold ------
      0.017   14.9   0.5       0.04   13.8   0.5    1.5  1  HSBP1         Heat shock factor binding protein 1
      0.049   13.9   1.2      0.049   13.9   1.2    2.0  2  ABC_tran_CTD  ABC transporter C-terminal domain


Domain annotation for each model (and alignments):
>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   1.3   2.5e-09   1.5e-05       1      70 [.       5      70 ..       5      75 .. 0.74
   2 !    4.9   0.3    0.0041        25     129     168 ..      49      88 ..      35      93 .. 0.61

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2.5e-09
     DUF1640  1 fDThalvrrLeekGftkeqAeaimsaltevlneslekvakslvskselekseylqkaalselrkevqise 70
                fDT++l +rLee+G+t++qAe+i ++l+e   e+ +k   s+      ++ e++ +  +++l +++++++
  CCG92220.1  5 FDTLKLSKRLEEAGLTQKQAEIISEVLVEGFLEENKKTD-SF---NAEQRLEMQLSLRMDKLESKIENLD 70
                9**********************9988876665555432.22...3345667777777777777777666 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0041
     DUF1640 129 qelnnkidrevsalrteiEsvKldvikyliglvvgilavg 168
                 q l+ +++  + +l ++iE++   + +y+  l+ +i+ +g
  CCG92220.1  49 QRLEMQLSLRMDKLESKIENLDKRLSQYFGLLMGSIVLLG 88 
                 4455556666666777777777777777666666666555 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.5   6.7e-06      0.04      19      45 ..      49      75 ..      49      77 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.7e-06
       HSBP1 19 qtmsdqilsriDdMssriDdLEksiad 45
                q+++ q+  r+D ++s+i++L+k +++
  CCG92220.1 49 QRLEMQLSLRMDKLESKIENLDKRLSQ 75
                677889999**************9886 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.15   8.8e+02      33      36 ..      16      19 ..       6      38 .. 0.55
   2 ?   13.9   1.2   8.3e-06     0.049       3      33 ..      44      75 ..      41      78 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.15
  ABC_tran_CTD 33 dpel 36
                  +++l
    CCG92220.1 16 EAGL 19
                  2222 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 8.3e-06
  ABC_tran_CTD  3 sykeqrele.eleaeIeaLEeeiaeleaelad 33
                  s++ +++le +l  ++++LE +i++l+++l++
    CCG92220.1 44 SFNAEQRLEmQLSLRMDKLESKIENLDKRLSQ 75
                  77888888878*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1265  (0.0705561); expected 358.6 (0.02)
Passed bias filter:                      715  (0.0398795); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 732.17
//
Query:       CCG92221.1  [L=160]
Description: Phosphohistidine phosphatase SixA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-12   45.8   0.0      1e-11   44.9   0.0    1.4  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   5.6e-16     1e-11       1      78 [.       3      80 ..       3      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 5.6e-16
                EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTT..S---EEEE-SSHHHHHHHHHHHHCTT..--EEE-GGGS CS
  His_Phos_1  1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlag..epidaiysSplkRarqTaeliaealg..lpveldegLr 78
                lyL+RH+  e +ae          L +eG+e+A+ +++ +++  +++d+i+sSpl Ra qTa+ ia++l+   +v + ++L+
  CCG92221.1  3 LYLIRHATAEPKAE----TDAQRNLVPEGKEEAKIVGKGFKKlgIKPDVIFSSPLNRALQTAKVIAQTLKfeNEVVIIPELE 80
                7**********999....788888******************88888899******************99877787777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1318.86
//
Query:       CCG92222.1  [L=371]
Description: Methylthioribose kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0023   17.9   0.0     0.0033   17.4   0.0    1.2  1  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.9e-07    0.0033      15     211 ..      71     285 ..      62     301 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.9e-07
                 EEEETT--EEEEE.........E-TTS-HHHHHHHHHHHHHHHHTT-...B--B-CTTBS-EEETTEEEEEEE----EE-SS.HHHHHHHHHHHHHHHH CS
         APH  15 lvttpagryvlrr.........npparaaeeirrevallrlLakagv...pvPevlagdtddeeigllfalieyvpgrsllr.klsaaqlpellealge 100
                 +v+t++++++l++         ++   +  +i +e++++ l +k ++   +v  +l+ d  +     + ++++ ++ ++ +  ++ ++ + + l  l +
  CCG92222.1  71 RVETSHRTFLLKQsrpwidccpSNR-APMSRILKEAEFYLLCSKDPIlrsYVSSLLYVDRTN-----YLLILSELGEKDCSAiYEKEPFSFDELTSLLD 163
                 6777777777777777777754444.48999**************99999899999842222.....245556666666666655699*********** PP

                 HHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHH.HHHHHHHH--S................SS-EEEE-SS-SGGGEEEC. CS
         APH 101 flaalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeq.vlaalaallpg................elptvllHgDlhpgNllvdp 182
                 fl  lh+  + + +   f+ q ++ + +++    + ++ + l    ++ e+  +++l++  ++                ++ ++l+Hg + p+  + + 
  CCG92222.1 164 FLSYLHSSFYKKKMIVKFENQAMRKYHWRNLFVIPMKQKKSLS---DCKENeSYDWLKRKFLTdwkfysamkqasyrylDQGPTLIHGNFLPPSWIRT- 258
                 ********99999999999887777766666655444433333...2333333444444444444448888888999999******************. PP

                 .TTEEEEE---TT-EEEECCHHHHCCHHH CS
         APH 183 ddgrvtGviDfedaglgpplyDlavllrs 211
                   + + G+ Dfe +  g p  D++ ll +
  CCG92222.1 259 -RTGI-GISDFESMICGRPEIDIGLLLSH 285
                 .9999.********************955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2862.53
//
Query:       CCG92223.1  [L=264]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00011   21.7   0.8       0.15   11.7   0.1    3.4  3  HTH_24           Winged helix-turn-helix DNA-binding
    0.00025   21.0   0.0         18    5.5   0.0    4.6  5  HTH_3            Helix-turn-helix
    0.00027   20.8   0.2        3.7    7.6   0.0    3.6  3  HTH_11           HTH domain
    0.00091   19.1   0.9        1.3    8.9   0.1    4.1  5  YdaS_antitoxin   Putative antitoxin of bacterial toxin-antito
     0.0013   18.6   0.1        1.5    8.8   0.0    3.5  3  MarR             MarR family
     0.0023   17.9   0.1        1.4    9.1   0.0    3.2  3  FeoC             FeoC like transcriptional regulator
     0.0047   16.7   0.1       0.12   12.2   0.0    2.7  2  HTH_AsnC-type    AsnC-type helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.7   0.4      0.095   12.7   0.1    2.5  3  Phage_terminase  Phage terminase small subunit
      0.013   14.9   0.1      0.022   14.2   0.1    1.4  1  RNA_pol_Rpc34    RNA polymerase Rpc34 subunit
      0.017   15.8   0.0       0.17   12.6   0.0    2.2  2  RPA_C            Replication protein A C terminal
      0.029   14.4   0.2         43    4.2   0.0    3.7  3  Put_DNA-bind_N   Putative DNA-binding protein N-terminus
      0.031   14.3   0.0        4.1    7.6   0.0    2.7  3  Phage_CI_repr    Bacteriophage CI repressor helix-turn-helix 
      0.052   13.3   0.1          7    6.5   0.0    3.1  3  HTH_IclR         IclR helix-turn-helix domain
      0.086   12.9   0.1         29    4.8   0.0    3.0  3  Dimerisation     Dimerisation domain


Domain annotation for each model (and alignments):
>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.15   1.9e+02       9      27 ..      63      83 ..      61      84 .. 0.83
   2 ?    4.6   0.0     0.018        23      12      36 ..     138     162 ..     136     166 .. 0.83
   3 !   11.7   0.1   0.00011      0.15       2      30 ..     193     222 ..     192     227 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.15
      HTH_24  9 LelLqk..nprisqreLAerl 27
                L+ +++  +++is  eL+++l
  CCG92223.1 63 LKMIEEagESGISLDELSDKL 83
                6777777789********997 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.018
      HTH_24  12 LqknprisqreLAerlglSpstvnr 36 
                 + k++ i + +LA +lg+ +s ++ 
  CCG92223.1 138 IVKEAPIHIDDLAAKLGVKSSSLRV 162
                 7789999***********9998765 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00011
      HTH_24   2 detdrkILelLqknpr.isqreLAerlglS 30 
                 ++ + k+L +L + ++ is+++LA +lg +
  CCG92223.1 193 NIRTEKVLAILAEAGGrISNKDLACKLGKT 222
                 567789*******5555*******999876 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.14   1.8e+02      30      46 ..      51      67 ..      47      72 .. 0.85
   2 ?    4.7   0.0     0.026        33       7      29 ..      71      93 ..      67      95 .. 0.90
   3 ?    2.4   0.0      0.12   1.6e+02      12      26 ..     146     160 ..     136     172 .. 0.86
   4 ?   -2.6   0.0       4.8   6.2e+03      31      45 ..     189     203 ..     189     211 .. 0.69
   5 ?    5.5   0.0     0.014        18      10      29 ..     210     229 ..     208     231 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.14
                HTTSSCSBHHHHHHHHH CS
       HTH_3 30 EnGernPsletlkklak 46
                E+   +Psl++l+k+ +
  CCG92223.1 51 ESKSPEPSLDVLLKMIE 67
                777789********987 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.026
                HTTHHHHHHHHHHTSSHHHHHHH CS
       HTH_3  7 qlglsqeeLAeklGvsrstisri 29
                + g+s+ eL++kl  ++ ti ++
  CCG92223.1 71 ESGISLDELSDKLRCPKDTIGKM 93
                579****************9986 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.12
                 HHHHHHHHTSSHHHH CS
       HTH_3  12 qeeLAeklGvsrsti 26 
                 + +LA+klGv+ s++
  CCG92223.1 146 IDDLAAKLGVKSSSL 160
                 579******998876 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 4.8
                 TTSSCSBHHHHHHHH CS
       HTH_3  31 nGernPsletlkkla 45 
                 +G+ n++ e++++++
  CCG92223.1 189 RGQDNIRTEKVLAIL 203
                 577777777777765 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.014
                 HHHHHHHHHHTSSHHHHHHH CS
       HTH_3  10 lsqeeLAeklGvsrstisri 29 
                 +s ++LA klG + ++is++
  CCG92223.1 210 ISNKDLACKLGKTTRQISNW 229
                 799***************99 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0097        12       5      32 ..      62      90 ..      59      94 .. 0.85
   2 ?    3.0   0.0     0.076        98       5      28 ..     135     157 ..     131     161 .. 0.72
   3 !    7.6   0.0    0.0029       3.7       1      32 [.     195     226 ..     195     228 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0097
      HTH_11  5 ilelLleargp.isgeeLAeeLnvSrrtv 32
                +l+++ ea +  is +eL+++L + + t+
  CCG92223.1 62 LLKMIEEAGESgISLDELSDKLRCPKDTI 90
                799999999999**********8866555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.076
      HTH_11   5 ilelLleargpisgeeLAeeLnv.S 28 
                  +e+++ea  pi +++LA +L+v S
  CCG92223.1 135 FIEIVKEA--PIHIDDLAAKLGVkS 157
                 55666333..499*********955 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0029
      HTH_11   1 RllqilelLleargpisgeeLAeeLnvSrrtv 32 
                 R++++l +L ea g is ++LA +L+ ++r +
  CCG92223.1 195 RTEKVLAILAEAGGRISNKDLACKLGKTTRQI 226
                 889******9***************9888766 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.2   1.6e+03       2      34 ..      67      99 ..      66     126 .. 0.72
   2 ?    1.2   0.0      0.27   3.4e+02      10      45 ..     105     140 ..      98     147 .. 0.84
   3 ?    3.7   0.0     0.045        58      12      31 ..     147     166 ..     132     178 .. 0.74
   4 ?    4.3   0.0     0.029        37      29      56 ..     188     215 ..     181     215 .. 0.86
   5 !    8.9   0.1     0.001       1.3      10      29 ..     211     230 ..     205     244 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.2
  YdaS_antitoxin  2 kkaieivGgqkaLAealgvsqqaVsqWlkgkkq 34
                    + a e+  +  +L ++l + + ++ ++l   +q
      CCG92223.1 67 EEAGESGISLDELSDKLRCPKDTIGKMLTVHSQ 99
                    556666667777888888888888888764444 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.27
  YdaS_antitoxin  10 gqkaLAealgvsqqaVsqWlkgkkqvpaervpeIek 45 
                     g  + A++  v+++ +  +l++++++++e  +eI+k
      CCG92223.1 105 GKERIARKKIVQPAVIPPFLRRRSRLTVEKFIEIVK 140
                     5567888888999999999999999*******9998 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.045
  YdaS_antitoxin  12 kaLAealgvsqqaVsqWlkg 31 
                       LA +lgv+++  + +l++
      CCG92223.1 147 DDLAAKLGVKSSSLRVFLSR 166
                     47*********998888764 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.029
  YdaS_antitoxin  29 lkgkkqvpaervpeIekatnGeVtreeL 56 
                      +g+ ++ +e v++I    +G+++ ++L
      CCG92223.1 188 RRGQDNIRTEKVLAILAEAGGRISNKDL 215
                     567778******************9998 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.001
  YdaS_antitoxin  10 gqkaLAealgvsqqaVsqWl 29 
                     + k LA +lg + +++s+W 
      CCG92223.1 211 SNKDLACKLGKTTRQISNWW 230
                     6799***************6 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.12   1.6e+02       8      38 ..      62      94 ..      60      95 .. 0.81
   2 ?    3.0   0.0     0.075        97      17      34 ..     143     160 ..     137     166 .. 0.86
   3 !    8.8   0.0    0.0012       1.5       7      42 ..     198     234 ..     196     243 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
                HHHHHHHSTT..EEHHHHHHHHTS-HHHHHHHH CS
        MarR  8 iLrilyeqgp..lsvseLakklgvskstvtrvl 38
                +L +++e g+  +s+ eL +kl + k t+ ++l
  CCG92223.1 62 LLKMIEEAGEsgISLDELSDKLRCPKDTIGKML 94
                7889999998445555********999999887 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.075
                 TEEHHHHHHHHTS-HHHH CS
        MarR  17 plsvseLakklgvskstv 34 
                 p+ + +La klgv++s++
  CCG92223.1 143 PIHIDDLAAKLGVKSSSL 160
                 78899**********986 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0012
                 HHHHHHHHSTT.EEHHHHHHHHTS-HHHHHHHHHHHH CS
        MarR   7 viLrilyeqgp.lsvseLakklgvskstvtrvldrLe 42 
                 ++L+il+e g+ +s+++La+klg ++  ++++ + L+
  CCG92223.1 198 KVLAILAEAGGrISNKDLACKLGKTTRQISNWWTSLI 234
                 589*******99**********999888888877776 PP

>> FeoC  FeoC like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0011       1.4      12      36 ..      71      95 ..      61      98 .. 0.82
   2 ?    1.0   0.0      0.35   4.5e+02      11      35 ..     140     164 ..     131     167 .. 0.84
   3 ?    3.5   0.0     0.057        73      10      32 ..     205     227 ..     199     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0011
        FeoC 12 rgrvslkeLsrhfkaspealeamLe 36
                +  +sl+eLs ++++ ++++ +mL 
  CCG92223.1 71 ESGISLDELSDKLRCPKDTIGKMLT 95
                5569*******************96 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.35
        FeoC  11 ergrvslkeLsrhfkaspealeamL 35 
                 ++  + +++L+ ++ ++++ l+  L
  CCG92223.1 140 KEAPIHIDDLAAKLGVKSSSLRVFL 164
                 6678999**********99998766 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.057
        FeoC  10 eergrvslkeLsrhfkaspeale 32 
                 e+ gr+s k+L++++  ++ ++ 
  CCG92223.1 205 EAGGRISNKDLACKLGKTTRQIS 227
                 4579***********99999886 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.22   2.9e+02      15      32 ..     141     158 ..     137     161 .. 0.80
   2 !   12.2   0.0   9.6e-05      0.12       7      31 ..     198     223 ..     197     228 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.22
  HTH_AsnC-type  15 daRisyaeLAervGlSes 32 
                     a i   +LA+++G+  s
     CCG92223.1 141 EAPIHIDDLAAKLGVKSS 158
                    5778889*******9766 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 9.6e-05
  HTH_AsnC-type   7 kILeaLqed.aRisyaeLAervGlSe 31 
                    k L++L e  +Ris+++LA ++G ++
     CCG92223.1 198 KVLAILAEAgGRISNKDLACKLGKTT 223
                    6799999999************9766 PP

>> Phage_terminase  Phage terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       7.1   9.1e+03      25      39 ..      76      90 ..      57     100 .. 0.60
   2 ?   -0.5   0.0      0.98   1.3e+03      23      40 ..     144     161 ..     133     170 .. 0.82
   3 ?   12.7   0.1   7.4e-05     0.095      11      42 ..     198     229 ..     189     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 7.1
  Phage_terminase 25 lkdIAkvLdvsestv 39
                     l ++ + L  ++ t+
       CCG92223.1 76 LDELSDKLRCPKDTI 90
                     444555555555555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.98
  Phage_terminase  23 lklkdIAkvLdvsestvr 40 
                      +++ d+A  L+v +s +r
       CCG92223.1 144 IHIDDLAAKLGVKSSSLR 161
                      567799******999887 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 7.4e-05
  Phage_terminase  11 kAyelykEsggtlklkdIAkvLdvsestvrkW 42 
                      k   +  E gg + +kd+A  L+   +++++W
       CCG92223.1 198 KVLAILAEAGGRISNKDLACKLGKTTRQISNW 229
                      6667889************************* PP

>> RNA_pol_Rpc34  RNA polymerase Rpc34 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.7e-05     0.022      79     124 ..      48      95 ..       8     116 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.7e-05
                    HHHHTSXHHHH..HHHHHHHHHXSSXEEHHHHHHTTGXXHHHHHHHHH CS
  RNA_pol_Rpc34  79 kkktslsedes..lVysiIeesGneGIwsrtiksklnLhksvvkkcLk 124
                    ++++s s ++s    +++Iee+G +GI   ++  kl+ +k  + k+L 
     CCG92223.1  48 ETLESKSPEPSldVLLKMIEEAGESGISLDELSDKLRCPKDTIGKMLT 95 
                    5566666666644799***************************99985 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00013      0.17      36      88 ..      43      94 ..      16     100 .. 0.80
   2 ?    0.6   0.0      0.71   9.1e+02      64      85 ..     140     161 ..     131     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00013
                XXXXXXXXX..XSXHHHHHHHHHHHH.SXSTTTEEHHHHHHHSTSXHHHHHHHH CS
       RPA_C 36 sgnqaklan.kgltalaqqvlnlikqspeseeGvhvdeiaqklrlsvndvkqav 88
                ++++ ++++ k+ ++  +++l +i +  ++e G+++de++ klr ++ ++ + +
  CCG92223.1 43 QNMSVETLEsKSPEPSLDVLLKMIEE--AGESGISLDELSDKLRCPKDTIGKML 94
                34444444466777788899999999..9********************99875 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.71
                 STTTEEHHHHHHHSTSXHHHHH CS
       RPA_C  64 seeGvhvdeiaqklrlsvndvk 85 
                 +e+ +h+d +a+kl++  ++++
  CCG92223.1 140 KEAPIHIDDLAAKLGVKSSSLR 161
                 66779*********99877766 PP

>> Put_DNA-bind_N  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.033        43      16      44 ..      62      90 ..      60      92 .. 0.87
   2 ?    2.7   0.0       0.1   1.3e+02      30      45 ..     146     161 ..     138     162 .. 0.87
   3 ?    2.8   0.0     0.097   1.2e+02      16      44 ..     199     226 ..     197     227 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.033
                    HHHHHHHTT--EE-HHHHHHHCTS-HHHH CS
  Put_DNA-bind_N 16 yLeelkeegveriSSteLaealgvtaaqv 44
                    +L+ ++e+g++ iS +eL+++l +   ++
      CCG92223.1 62 LLKMIEEAGESGISLDELSDKLRCPKDTI 90
                    58999****************99876665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.1
                     HHHHHHHCTS-HHHHH CS
  Put_DNA-bind_N  30 SteLaealgvtaaqvR 45 
                      ++La++lgv+++ +R
      CCG92223.1 146 IDDLAAKLGVKSSSLR 161
                     579**********998 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.097
                     HHHHHHHTT--EE-HHHHHHHCTS-HHHH CS
  Put_DNA-bind_N  16 yLeelkeegveriSSteLaealgvtaaqv 44 
                     +L  l e+g  riS ++La +lg t  q+
      CCG92223.1 199 VLAILAEAG-GRISNKDLACKLGKTTRQI 226
                     566777887.8************998887 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0032       4.1      15      60 ..      77     152 ..      60     157 .. 0.91
   2 ?    2.4   0.0      0.13   1.6e+02      17      35 ..     148     166 ..     144     170 .. 0.82
   3 ?    3.7   0.1      0.05        64       4      33 ..     201     230 ..     198     232 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0032
                    CHHHHCCTT--HHHHH...............................HHHHSSS--HHHHHHHHHHH---HHHHHC- CS
  Phage_CI_repr  15 qkeLAdlLgiakssvs...............................twvrRdffPgdvvvtcaletdtsLewLatG 60 
                    + eL+d L  +k ++                                 + rR++   ++ +++ +e  + +++La +
     CCG92223.1  77 D-ELSDKLRCPKDTIGkmltvhsqdiefvgkeriarkkivqpavippFLRRRSRLTVEKFIEIVKEAPIHIDDLAAK 152
                    4.99******************************************9999************************976 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.13
                    HHHCCTT--HHHHHHHHHS CS
  Phage_CI_repr  17 eLAdlLgiakssvstwvrR 35 
                    +LA+ Lg+  ss+    +R
     CCG92223.1 148 DLAAKLGVKSSSLRVFLSR 166
                    9*********999766655 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.05
                    HHHHHHHT-SSCHHHHCCTT--HHHHHHHH CS
  Phage_CI_repr   4 eRlmsaygvkmqkeLAdlLgiakssvstwv 33 
                      l +a g  ++k+LA  Lg     +s+w 
     CCG92223.1 201 AILAEAGGRISNKDLACKLGKTTRQISNWW 230
                    557788888899****************96 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.17   2.2e+02       8      32 ..      62      87 ..      61      95 .. 0.84
   2 ?    0.6   0.0      0.38   4.9e+02      20      36 ..     145     161 ..     139     166 .. 0.80
   3 ?    6.5   0.0    0.0055         7       7      29 ..     198     220 ..     195     223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.17
                HHCT-CTTBSS-.BHHHHHHHHTS-H CS
    HTH_IclR  8 iLdalaeapqel.tlselArrtglpk 32
                +L++++ea++   +l el++++  pk
  CCG92223.1 62 LLKMIEEAGESGiSLDELSDKLRCPK 87
                6899999999967*******998887 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.38
                 BHHHHHHHHTS-HHHHH CS
    HTH_IclR  20 tlselArrtglpkStvh 36 
                  + +lA+++g+  S+ +
  CCG92223.1 145 HIDDLAAKLGVKSSSLR 161
                 6779*******999976 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0055
                 HHHCT-CTTBSS-BHHHHHHHHT CS
    HTH_IclR   7 aiLdalaeapqeltlselArrtg 29 
                  +L +laea+++ ++++lA ++g
  CCG92223.1 198 KVLAILAEAGGRISNKDLACKLG 220
                 69*****************8887 PP

>> Dimerisation  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.023        29      11      38 ..      62      88 ..      59      94 .. 0.83
   2 ?   -2.3   0.0       3.7   4.8e+03      23      44 ..     144     165 ..     137     166 .. 0.62
   3 ?    4.6   0.0     0.026        33      11      34 ..     199     221 ..     198     229 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.023
  Dimerisation 11 lldiiakaggkplspsEiaskLptknpe 38
                  ll +i +ag + +s+ E+  kL  ++++
    CCG92223.1 62 LLKMIEEAGESGISLDELSDKLR-CPKD 88
                  4678999*999***********9.5554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.7
  Dimerisation  23 lspsEiaskLptknpeapvlld 44 
                   +   ++a+kL  k ++  v+l 
    CCG92223.1 144 IHIDDLAAKLGVKSSSLRVFLS 165
                   5556788888866666555655 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.026
  Dimerisation  11 lldiiakaggkplspsEiaskLpt 34 
                   +l i+a+ag   +s +++a+kL +
    CCG92223.1 199 VLAILAEAG-GRISNKDLACKLGK 221
                   6789****8.79*********983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 1958.20
//
Query:       CCG92224.1  [L=151]
Description: Starvation-inducible outer membrane lipoprotein (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-32  111.7   0.0    2.4e-32  111.4   0.0    1.0  1  Slp       Outer membrane lipoprotein Slp family


Domain annotation for each model (and alignments):
>> Slp  Outer membrane lipoprotein Slp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.0   1.3e-36   2.4e-32      16     129 ..      34     148 ..      24     151 .] 0.95

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 1.3e-36
         Slp  16 atelslsevkaapeaykgkevrlGGkivkvenkkdktrleivslpLds.sgrPelsdeseGRflarvegFlDPaiykkgrlvTvvGtlkgsetgkigea 113
                 +te+s+s+++a+peay g+++  GG+i++v+n +d++ +e+++ pL++  + P ++d s GRfl+ +++FlDP+iy++g+ vTv+G+l+ ++ g ig+ 
  CCG92224.1  34 KTEPSFSAIMAHPEAYIGTRLFIGGVIAQVQNLPDRSLIEVIHKPLSKsFKVPLTTDLSYGRFLVSTRKFLDPTIYTRGKSVTVIGRLSRVQPGIIGKR 132
                 56789*****************************************996789*********************************************** PP

         Slp 114 dytypvvevkgvklWp 129
                  y+ypv+++++++lW 
  CCG92224.1 133 FYKYPVISASHIHLWA 148
                 ***************3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1202.12
//
Query:       CCG92225.1  [L=418]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-08   32.5   0.0    1.1e-07   31.6   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    2.5e-05   24.7   0.0    5.5e-05   23.6   0.0    1.6  1  Glyco_trans_1_4  Glycosyl transferases group 1
     0.0061   16.9   0.0      0.051   14.0   0.0    2.3  2  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   1.8e-11   1.1e-07       6     160 ..     222     376 ..     218     388 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.8e-11
                      HHHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEE CS
  Glycos_transf_1   6 rkklgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlp 99 
                      +++ +k+  k i+ + g + ++K ++l+ k++++ +   ++   + i+G+    +++++la++++l++ v+++g++++e++ e+l+  d+ ++ 
       CCG92225.1 222 SFSVPKDRPKLIAATFGYVLPNKAYELVFKVLQSNPML-QKHMEYWIVGGTFFWYNIHSLAKKYKLQAIVKIFGYQEPEKVQEILSCVDLCIAL 314
                      677888889999999******************99986.**********99999*********************************9999999 PP

                      ESS..BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSH....H CS
  Glycos_transf_1 100 sis..EgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairkllede....e 160
                                +ll+ m + +pv++ n+g +ae+ +  +    +k  n+e++ ++++++l+ +     
       CCG92225.1 315 RDPtmGETSSSLLNQMLLSKPVVVLNVGWYAELPNTLV----FKL-NPESAEKELEEILKMSlfnrS 376
                      766889999***********************976655....333.477777777777776654334 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   9.1e-09   5.5e-05      15     128 ..     244     364 ..     230     370 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 9.1e-09
                      GTHHHHHHHH..HHHH.HHEEEEEES---....HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE...--.---SHHHHHHHHTT-E CS
  Glyco_trans_1_4  15 kgvdllleav..pllrkkdvrlvivGdgp..rpeeleelaa..gleerveftGfv..edlaellaaadvfva...Ps.egfglkllEamaaglp 96 
                      k+ +l+ + +    +++k+++ +ivG g+  +  ++++la+  +l++ v++ G+   e+++e+l+ +d+++a   P+   ++ +ll  m + +p
       CCG92225.1 244 KAYELVFKVLqsNPMLQKHMEYWIVG-GTffWY-NIHSLAKkyKLQAIVKIFGYQepEKVQEILSCVDLCIAlrdPTmGETSSSLLNQMLLSKP 335
                      66666655553222334679******.666754.67767755789888*******8667*************555445469************* PP

                      EEE-TGGGTTT--TTSSEE--TT-HHHHHHHH CS
  Glyco_trans_1_4  97 vVatdvggiaevvgengllvppgdpealaeai 128
                      vV+ +vg  ae+   n l+++  +pe+  +++
       CCG92225.1 336 VVVLNVGWYAEL--PNTLVFK-LNPESAEKEL 364
                      ******555773..3444443.3455444444 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.24   1.5e+03      34      62 ..     155     182 ..     142     189 .. 0.81
   2 !   14.0   0.0   8.5e-06     0.051      49      91 ..     361     403 ..     348     404 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.24
  Glyco_trans_1_2  34 eelftpgkevilfedleelaekiryllan 62 
                       +++ +  +++++   ee++ k  +l+ +
       CCG92225.1 155 KKIYVEH-SILWYPMNEEVISKASALVVH 182
                      5666665.9*****99***9999988766 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 8.5e-06
  Glyco_trans_1_2  49 leelaekiryllanpeerraiaeaarervlaehtydhraeqll 91 
                      ++el+e ++  l n+ e  +++++a+e vla+ht  h a++l+
       CCG92225.1 361 EKELEEILKMSLFNRSELIKMGNRAKEYVLAHHTPIHYAQKLM 403
                      5789999999999***************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3088.93
//
Query:       CCG92226.1  [L=61]
Description: hypothetical protein MFUM_50017 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 546.58
//
Query:       CCG92227.1  [L=126]
Description: transposase (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-05   25.1   2.0    2.4e-05   24.5   2.0    1.3  1  OrfB_IS605  Probable transposase
    2.1e-05   24.9   1.0    2.5e-05   24.6   1.0    1.1  1  GLTP        Glycolipid transfer protein (GLTP)
    0.00048   20.4   3.6    0.00065   20.0   3.6    1.2  1  DUF2992     Protein of unknown function (DUF2992)
  ------ inclusion threshold ------
      0.016   15.6   5.9        1.3    9.3   5.3    2.0  2  ICA69       Islet cell autoantigen ICA69, C-terminal domain
      0.039   12.3   0.9      0.039   12.2   0.9    1.0  1  RAP1        Rhoptry-associated protein 1 (RAP-1)
      0.061   13.4   2.1      0.077   13.1   2.1    1.1  1  RGS_DHEX    Regulator of G-protein signalling DHEX domain


Domain annotation for each model (and alignments):
>> OrfB_IS605  Probable transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   2.0     8e-09   2.4e-05      21      95 ..       1      69 [.       1      74 [. 0.91

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 8e-09
  OrfB_IS605 21 iDlGinnLatvvtedgtwflykgrrlksdykylakeiaelqsklkksknykkasrklarlhrkrsrrrkhllhkl 95
                +D+Gi   +t++++       k  +  +++ +l++ +++l +++++skn  k+++ l++ h++++++rk++++k+
  CCG92227.1  1 MDFGIDSKLTLSNGI------KIDFEWQEFTRLKRLQRKLTKLKNDSKNKSKVQNLLKKEHEEIRNKRKDAQNKT 69
                688888888888888......777888999*******************************************97 PP

>> GLTP  Glycolipid transfer protein (GLTP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   1.0   8.4e-09   2.5e-05      33      94 ..      32      89 ..      24     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.4e-09
                HHHHHHHHHTT....T-SBHHHHHHHHHHTT-TT..STT-HHHHHHHHHHHHHHHHHHHHHH CS
        GLTP 33 gniekleeaykknpeeystleslveaEkeeglakkkkkesatrallwLkRgLeflaeflekl 94
                ++++kl    k+++++ s++++l+++E ee ++k k++++ t a+l+L+Rg  f   fl+  
  CCG92227.1 32 RKLTKL----KNDSKNKSKVQNLLKKEHEEIRNKRKDAQNKTLAFLKLHRGVVFQEDFLKDW 89
                444444....444446678********9998888899**********************876 PP

>> DUF2992  Protein of unknown function (DUF2992)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   3.6   2.2e-07   0.00065      62     108 ..      22      68 ..       5      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.2e-07
     DUF2992  62 ekkknpKRlqReikkelkkkgvgtkAqqalklqleqrkkerkkkske 108
                 ++ +  KRlqR++ k +++++ ++k q+ lk+++e+ +++rk ++ +
  CCG92227.1  22 QEFTRLKRLQRKLTKLKNDSKNKSKVQNLLKKEHEEIRNKRKDAQNK 68 
                 567789***********************************988754 PP

>> ICA69  Islet cell autoantigen ICA69, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.3   0.00043       1.3       3      38 ..      23      57 ..      22      74 .. 0.65
   2 ?    6.6   0.1    0.0028       8.5     104     146 ..      61     100 ..      54     115 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00043
       ICA69  3 eFttLKdLqdpleklaekekkeekekeeeeededeq 38
                eFt LK+Lq +l kl +++k+++k ++  +++++ +
  CCG92227.1 23 EFTRLKRLQRKLTKLKNDSKNKSKVQNLLKKEHE-E 57
                8****************99986333333333222.2 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0028
       ICA69 104 legedaekddlsllneiLspssleegefsrewqaafGeeeasn 146
                 + +++++k  l++l+  L  + + +++f ++w+  fG++  ++
  CCG92227.1  61 KRKDAQNK-TLAFLK--LHRGVVFQEDFLKDWARLFGRQVHAS 100
                 45555566.888888..8999999*************987655 PP

>> RAP1  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.9   1.3e-05     0.039     221     268 ..      26      76 ..      13     110 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
        RAP1 221 sleklekeidilkneyd...kvkekeeeeydeieekakeekkkalekveke 268
                  l++l++++  lkn+ +   kv++  ++e++ei +k+k+ + k+l+ ++ +
  CCG92227.1  26 RLKRLQRKLTKLKNDSKnksKVQNLLKKEHEEIRNKRKDAQNKTLAFLKLH 76 
                 57899999******9752114555559*****************9976544 PP

>> RGS_DHEX  Regulator of G-protein signalling DHEX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.1   2.6e-05     0.077      31      93 ..      19      83 ..       5      89 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.6e-05
    RGS_DHEX 31 leeyekealnklqkllakkwefiimqaeeqlkvdkerkkadkaildsqer..afwkvhrppPGqa 93
                +e +e + l++lq++l+k  +   ++++ q  ++ke++ +  +  d+q++  af k hr +  q+
  CCG92227.1 19 FEWQEFTRLKRLQRKLTKLKNDSKNKSKVQNLLKKEHEEIRNKRKDAQNKtlAFLKLHRGVVFQE 83
                677899999**************************************9987789*****876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2597  (0.144849); expected 358.6 (0.02)
Passed bias filter:                     1117  (0.0623013); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 983.43
//
Query:       CCG92228.1  [L=61]
Description: hypothetical protein MFUM_50019 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-06   25.9   0.0    9.6e-06   25.7   0.0    1.1  1  Y1_Tnp    Transposase IS200 like


Domain annotation for each model (and alignments):
>> Y1_Tnp  Transposase IS200 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   5.4e-10   9.6e-06       1      38 [.      13      50 ..      13      55 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 5.4e-10
      Y1_Tnp  1 vsnlkyhivlvtkyRrkvltgeveerlkeiikeiaekk 38
                v+n+ y++++++kyRr+vl gev+   k  i++ ++k+
  CCG92228.1 13 VYNIGYQLIWCPKYRRPVLVGEVAAAAKRAIARESQKN 50
                68999********************9999998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 476.62
//
Query:       CCG92229.1  [L=421]
Description: Nucleotidyltransferase/DNA polymerase UmuC [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-35  122.3   0.0    2.4e-35  121.8   0.0    1.2  1  IMS       impB/mucB/samB family
    6.1e-10   39.8   0.0    2.9e-09   37.7   0.0    2.0  2  IMS_C     impB/mucB/samB family C-terminal domain
    1.8e-08   34.3   0.2    3.9e-08   33.3   0.2    1.6  1  DUF4113   Domain of unknown function (DUF4113)
    0.00028   21.0   0.0    0.00098   19.3   0.0    2.0  1  IMS_HHH   IMS family HHH motif
  ------ inclusion threshold ------
       0.12   12.6   0.0       0.29   11.4   0.0    1.6  1  Cdd1      Pathogenicity locus


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.0   6.6e-39   2.4e-35       1     150 []      10     153 ..      10     153 .. 0.95

  Alignments for each domain:
  == domain 1  score: 121.8 bits;  conditional E-value: 6.6e-39
                 EEETTHHHHHHHHHT.T-TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTHT.T.-EEEEEE-HHHHHHHHHHHHHHHHH-S..EEEEET CS
         IMS   1 iDmdaFyasverardpeLkgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklcp.d.livvkvdlekyrraskkileilkrfispkvekasi 97 
                 iD+d+Fy+s+er+ +p+L+gkPvvv ++++  g+v++ s+eA+a G+  g + ++ k+  + + li +++++++y ++s++++e+++   +p+ve +si
  CCG92229.1  10 IDCDNFYVSCERLFNPSLEGKPVVVLSNND--GCVVSRSKEAKALGIPMGAPFFQWKEFFQsHkLIALSSNYTLYGDISSRVMELVEAS-APLVEVYSI 105
                 8***************************77..***************************97556*************************.88******* PP

                 TEEEEE-HHHHHHHH-SHHHHHHHHHHHHHHHH---EEEEEESSHHHHHHHHH CS
         IMS  98 DEayldltgleelaesegaalakelrkaikeelgltvsiGiasnkllAKlase 150
                 DE ++dlt+  +    + +++a+elrk+i+  +g++v+iGi+++k+lAK+as+
  CCG92229.1 106 DETWVDLTDSPS----P-YEYARELRKKIWRWTGIPVTIGIGPTKTLAKVASK 153
                 *********644....4.778******************************96 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.79   2.8e+03      79      97 ..     119     137 ..      74     156 .. 0.74
   2 !   37.7   0.0     8e-13   2.9e-09       6     114 ..     243     354 ..     239     356 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.79
       IMS_C  79 leaalkLlrrlidepglpi 97 
                 +e a++L ++++++ g p+
  CCG92229.1 119 YEYARELRKKIWRWTGIPV 137
                 7888999999999866665 PP

  == domain 2  score: 37.7 bits;  conditional E-value: 8e-13
       IMS_C   6 pepksissektfpe.pydesk.lkkelreLaeelarrLrdkglvartitlklrysdfh...asrsatLprptsdtreileaalkLlrrlidepglpirl 99 
                 ++pk+i s++tf++  +   + lk+ + +++ e+  +Lr+ gl a ++t+++r  +f    +s +  + +p  dt ++l+   +Ll+++++ p++ +++
  CCG92229.1 243 KPPKQILSSQTFGKaLFQL-DeLKAAMANFVNEAGGKLRRFGLAAGSMTVFVRHGSFPgqvTSATLRFIEPVEDTITLLDKGESLLQSVYK-PNRTYTK 339
                 68***********965553.24888888************************96655575677777777799*******************.******* PP

       IMS_C 100 igvsasnlvekaesq 114
                  gv + +l++++++q
  CCG92229.1 340 SGVLLFDLQPRENHQ 354
                 *********887765 PP

>> DUF4113  Domain of unknown function (DUF4113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.2   1.1e-11   3.9e-08      15      51 .]     383     419 ..     369     419 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.1e-11
     DUF4113  15 GrgtvklaaqglkasWkmkrehlSprYTTrwdelpvV 51 
                  + +++++++ + ++W+++ e+++p+YT+rw+e+p+V
  CCG92229.1 383 SKPALRVGTELFSENWRLRAERKTPSYTSRWKEIPTV 419
                 45679999999************************98 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.7e-07   0.00098      11      32 .]     180     201 ..     171     201 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.7e-07
     IMS_HHH  11 lpitkipGiGgklgekLeklGi 32 
                 +++ +++GiG +l++kL+ l+i
  CCG92229.1 180 IDVEDVWGIGHRLAAKLKELKI 201
                 699****************998 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.2e-05      0.29       7      42 ..     181     216 ..     176     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.2e-05
        Cdd1   7 elqdiPniGkalaedlvelGirsveelkgedpeely 42 
                 + +d+ +iG++la++l el i+s  +l++ dp ++ 
  CCG92229.1 181 DVEDVWGIGHRLAAKLKELKIHSGLDLRNADPFHIR 216
                 678999**************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2967.80
//
Query:       CCG92230.1  [L=196]
Description: putative Repressor lexA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-11   43.6   0.0    4.7e-11   42.5   0.0    1.6  1  Peptidase_S24  Peptidase S24-like


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   2.6e-15   4.7e-11       3      57 ..     109     162 ..     107     169 .. 0.92

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 2.6e-15
                    XSSTT.CCTXXTTXEEEEECTS---TTSEEEEEETTCE-EEEEEEEEETTEEEEE. CS
  Peptidase_S24   3 pGdSM.eptlldGdlilVdkfsepkrGdivvfrlpgeeeayiKrviglpgdrvlla 57 
                     G+SM   ++++Gd+++Vd+ ++pk+G ivv+ ++ge  + +K++  ++g+ +ll+
     CCG92230.1 109 SGHSMeGEGIRNGDILVVDRAETPKNGSIVVAAINGE--LAVKKLRIEGGRAWLLS 162
                    69***65******************************..9**********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1413.56
//
Query:       CCG92231.1  [L=52]
Description: hypothetical protein MFUM_50023 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.31s 00:00:00.70 Elapsed: 00:00:00.46
# Mc/sec: 340.12
//
Query:       CCG92232.1  [L=58]
Description: hypothetical protein MFUM_50024 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 419.24
//
Query:       CCG92233.1  [L=67]
Description: hypothetical protein MFUM_500001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 509.89
//
Query:       CCG92234.1  [L=58]
Description: hypothetical protein MFUM_500002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 445.88
//
Query:       CCG92235.1  [L=157]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1209.42
//
Query:       CCG92236.1  [L=41]
Description: hypothetical protein MFUM_510002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.062   13.1   0.0      0.073   12.8   0.0    1.1  1  ubiquitin  Ubiquitin family


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.1e-06     0.073      25      51 ..      11      37 ..       8      40 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-06
                HHHHHHHHTSSGGGEEEEETTEEE-TT CS
   ubiquitin 25 KekiaekegipaeqqrLiysGkvLede 51
                K++ia+k+ +  + +++iy+G+ L+ +
  CCG92236.1 11 KKRIAWKQLFKDHLFKIIYNGQYLSFH 37
                99********************99755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 332.26
//
Query:       CCG92237.1  [L=71]
Description: hypothetical protein MFUM_530001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 624.05
//
Query:       CCG92238.1  [L=45]
Description: hypothetical protein MFUM_530002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 320.53
//
Query:       CCG92239.1  [L=112]
Description: hypothetical protein MFUM_530003 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0024   17.9   0.6     0.0028   17.7   0.6    1.1  1  Glyco_trans_4_2  Glycosyl transferase 4-like
  ------ inclusion threshold ------
      0.025   14.6   0.0      0.027   14.5   0.0    1.1  1  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.6   3.1e-07    0.0028      33      96 ..      31     100 ..       4     107 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.1e-07
  Glyco_trans_4_2  33 kkga..kdeleaegihvhrl.kvdrkgpleylk.af.klkklikkikPDvv..hahyakpygllgslaarl 96 
                      k+++  ++    eg+h ++l k++rk+p  +l+ ++  + k i k+k+D++  h +ya+  ++++ ++  +
       CCG92239.1  31 KEHHirDEWNSFEGYHWINLsKSNRKFPKFFLNaIRiDILKYIWKEKYDIIwiHGYYATT-NWVAIILQSI 100
                      555543333446899999997777999888887466799**********96226667776.5677776555 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     3e-06     0.027      19      88 ..      21      93 ..       8     109 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3e-06
  Glyco_transf_4 19 GheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflr....rlrrllkrekpDvvHahspaalgaal 88
                     +  tv+  + ++++++e ++  ++  +  +++ ++++   fl     ++ + + +ek+D++ +h+++a    +
      CCG92239.1 21 DISFTVIYYSKEHHIRDE-WNSFEGYHWINLSKSNRKFPKFFLNairiDILKYIWKEKYDIIWIHGYYATTNWV 93
                    566789999999999999.44444444443333333333333331111445667777*****888888764322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 918.60
//
Query:       CCG92240.1  [L=130]
Description: Glycosyltransferase (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-07   28.5   0.0    1.3e-06   28.1   0.0    1.1  1  Glycos_transf_1  Glycosyl transferases group 1
    2.4e-05   24.8   0.0      3e-05   24.5   0.0    1.2  1  Glyco_trans_1_4  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.4e-10   1.3e-06       2      65 ..      64     125 ..      63     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.4e-10
                      HHHHHHHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHH CS
  Glycos_transf_1   2 kekkrkklgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkkl 65 
                      +e +rk+ g+ +  ++il+ grl+++K + ll++af+ll k  + ++ l+++G+g+ +k+ kk+
       CCG92240.1  64 RESIRKSFGIFNHFPVILFCGRLVEMKCPFLLLDAFQLLVK--EFPCYLLVVGDGPLRKKWKKK 125
                      67889999999****************************97..588999999999999988876 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   3.3e-09     3e-05       2      50 ..      78     126 ..      77     130 .] 0.83

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 3.3e-09
                      EEEEEES---GG.GTHHHHHHHHHHHH.H.HEEEEEES---...HHHHHHH CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllrkk.dvrlvivGdgp.rpeeleela 50 
                      pvilf+Grl+ + k   lll+a++ll k+ ++ l++vGdgp r+ + ++++
       CCG92240.1  78 PVILFCGRLV-EMKCPFLLLDAFQLLVKEfPCYLLVVGDGPlRK-KWKKKL 126
                      79*******5.56**********99998877**********765.666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 991.76
//
Query:       CCG92241.1  [L=63]
Description: hypothetical protein MFUM_530006 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-13   48.7   0.0    6.3e-13   48.6   0.0    1.0  1  Glycos_transf_1  Glycosyl transferases group 1
    7.5e-07   29.7   0.0    8.1e-07   29.5   0.0    1.0  1  Glyco_trans_1_4  Glycosyl transferases group 1
      0.009   16.4   0.0     0.0092   16.3   0.0    1.0  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   1.1e-16   6.3e-13     105     165 ..       1      62 [.       1      63 [] 0.97

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 1.1e-16
                      S-HHHHHHHHTT--EEEET.TTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHH CS
  Glycos_transf_1 105 fGivllEAmaaglpviasn.aggpaevvkdgetGllvkpnnaealaeairklledeelrerl 165
                      +G+v+ EAm +gl +ias  +g + ++vk++e+Gl++++nn+ +lae ir +++de +r+++
       CCG92241.1   1 MGVVINEAMNFGLLIIASGlVGSIGDLVKHEENGLVFPANNVSKLAECIRTIIKDESKRKKM 62 
                      599********************************************************998 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.4e-10   8.1e-07      83     134 .]       1      55 [.       1      55 [. 0.91

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.4e-10
                      -SHHHHHHHHTT-EEEE-TG.GGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  83 fglkllEamaaglpvVatdv.ggiaevv..gengllvppgdpealaeailrLled 134
                      +g+++ Eam +gl ++a+ + g i ++v  +engl++p++++++lae i ++++d
       CCG92241.1   1 MGVVINEAMNFGLLIIASGLvGSIGDLVkhEENGLVFPANNVSKLAECIRTIIKD 55 
                      689***************762569****999*******************99987 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.5e-06    0.0092      15      69 ..       5      62 ..       1      63 [] 0.93

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.5e-06
  Glyco_trans_1_2 15 lfEaaacGafaltdda.egleelftpgkevilfe..dleelaekiryllanpeerrai 69
                     + Ea+ +G +++++    ++++l++ ++ +++f   ++  lae ir  ++++ +r+++
       CCG92241.1  5 INEAMNFGLLIIASGLvGSIGDLVKHEENGLVFPanNVSKLAECIRTIIKDESKRKKM 62
                     569***********889**************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.48
# Mc/sec: 391.72
//
Query:       CCG92242.1  [L=349]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-25   88.0   0.0    8.2e-25   87.3   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    3.2e-19   69.7   0.0    6.8e-19   68.6   0.0    1.5  2  Glyco_trans_1_4  Glycosyl transferases group 1
    2.9e-05   24.1   0.0    0.00075   19.5   0.0    2.6  2  Glyco_transf_4   Glycosyltransferase Family 4
     0.0001   22.6   0.0    0.00017   21.9   0.0    1.3  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.0   1.8e-28   8.2e-25      12     170 ..     159     315 ..     149     317 .. 0.93

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 1.8e-28
                      TTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS.BS CS
  Glycos_transf_1  12 nekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis.Eg 104
                       +++  il+vgr++ eKg+  ++ka+ llk+ ++ ++   ++G g+ee +l++ +++  l+  v +lg + ++++  l+k+ +i+v+ s + E+
       CCG92242.1 159 ENRPQDILFVGRMVSEKGPIDVLKALMLLKQ-EKIDLTASFVGYGPEEVNLRAFVKANDLEQWVDILGPKTQQEVADLMKKHKILVVLSLWnEP 251
                      456678*********************9976.5************************************************************* PP

                      S-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHH CS
  Glycos_transf_1 105 fGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenar 170
                      fGiv+lE +a+g+ vi s  gg+++ + +   Gl ++++++ +la +i+++++++el + l+  a+
       CCG92242.1 252 FGIVALEGIASGCVVIGSEGGGLKDAIGPC--GLTYPNGDVYQLASKIKEVIKNPELFHSLRMHAK 315
                      ***************************985..5999999****************99888877666 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.8   8.1e+03       4      36 ..       3      38 ..       2      47 .. 0.73
   2 !   68.6   0.0   1.5e-22   6.8e-19       2     134 .]     163     303 ..     162     303 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
                     EEEES--.-GG.GTHHHHHHHH.HHHH.HH.EEEEE CS
  Glyco_trans_1_4  4 ilfvGrl.eenvkgvdllleav.pllrkkd.vrlvi 36
                     +lf + l ++++ g + +++ + ++l kk+ + l +
       CCG92242.1  3 LLFACYLfWPRIGGTETFAHILaQELSKKEkISLSV 38
                     678888877888899999999988888774466655 PP

  == domain 2  score: 68.6 bits;  conditional E-value: 1.5e-22
                      EEEEEES---GG.GTHHHHHHHHHHHH.HH..EEEEEES---..HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--...---SHH CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllrkkd..vrlvivGdgprpeeleelaa..gleerveftGfv..edlaellaaadvfvaPs...egfglk 86 
                      ++ilfvGr++ + kg   +l+a+ ll++++  ++  +vG gp++ +l++ ++  +le+ v ++G    +++a+l+++++++v+ s   e fg++
       CCG92242.1 163 QDILFVGRMVSE-KGPIDVLKALMLLKQEKidLTASFVGYGPEEVNLRAFVKanDLEQWVDILGPKtqQEVADLMKKHKILVVLSlwnEPFGIV 255
                      689******655.**************88445999999999955689887756689877*****998788*************999*99***** PP

                      HHHHHHTT-EEEE-TGGGTTT--TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvggiaevvgengllvppgdpealaeailrLled 134
                      +lE  a+g+ v+ ++ gg+++++g  gl  p+gd+ +la +i +++++
       CCG92242.1 256 ALEGIASGCVVIGSEGGGLKDAIGPCGLTYPNGDVYQLASKIKEVIKN 303
                      *******************************************99876 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.7e-07   0.00075       1     168 [.      14     150 ..      14     152 .. 0.70
   2 ?   -3.1   0.0       1.5   6.9e+03      57      75 ..     176     194 ..     161     197 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.7e-07
  Glyco_transf_4   1 vGGverhvleLaraLar.rGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvv.Hahspaalgaallalrr 93 
                     +GG e++++ La++L +   +  +v+t ++ + +e                ++r  r++ ++  +   l   +  ++   h p+ l++a   +++
      CCG92242.1  14 IGGTETFAHILAQELSKkEKISLSVLTATPYEGEEPF--------------PYRVIRTINPYNPFSVFLVTLNAGIIlYNHLPIKLCWA---SAL 91 
                     69*************9966788999986544443333..............22233333333333333333445566355555555443...343 PP

  Glyco_transf_4  94 rlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDl 168
                      l++p+ + +H              ++ +   +++++l++a+ ++ vS+a+ d+l       ++k  +ipn+ D 
      CCG92242.1  92 -LNKPYGIIIHRYL----------SFKGIKGIFYKWILKKAKIIVGVSQAIVDHLPY-----KAKTIIIPNPYDD 150
                     .8************..........78999999999******************9988.....37899****9996 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.5
  Glyco_transf_4  57 slaflrrlrrllkrekpDv 75 
                      +  ++++  llk+ek+D+
      CCG92242.1 176 GPIDVLKALMLLKQEKIDL 194
                     5667788899999999997 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.8e-08   0.00017       9      86 ..     250     326 ..     234     332 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.8e-08
  Glyco_trans_1_2   9 espnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhr 86 
                      e +  + +E  a+G++++ ++  gl + + p   ++++   d+ +la ki+++++npe+ ++++ +a+e+ l++ht +  
       CCG92242.1 250 EPFGIVALEGIASGCVVIGSEGGGLKDAIGPC--GLTYPngDVYQLASKIKEVIKNPELFHSLRMHAKEH-LKKHTKQAC 326
                      4577899*************99******9666..9999999*****************************.999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2242.88
//
Query:       CCG92243.1  [L=285]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-11   44.3   0.0    5.3e-11   42.6   0.0    1.8  2  Glycos_transf_2  Glycosyl transferase family 2
     0.0032   18.0   0.1      0.023   15.2   0.0    2.3  2  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0     6e-15   5.3e-11       1     129 [.       4     126 ..       4     154 .. 0.83
   2 ?   -1.1   0.0      0.16   1.4e+03     121     169 ..     197     241 ..     191     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 6e-15
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SS..EEEEEESSEEE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgd..yilflDaDdep 92 
                      svvi tyN ekt+  t+es la+      ++ vvD  S+D+t +il ++     +v++ +++    +a+ +n+++++   +  + l lDaD   
       CCG92243.1   4 SVVILTYNSEKTIIPTIESSLAI----SNDVHVVDSYSSDGTIKILSSY-----PVHITQHPFE-NYAKQRNWAIENLPLKmpWELHLDADERL 87 
                      8**********************....**********************.....9*******88.************888888*********** PP

                      -TTHHHHHHHH..HHH.TTCEEEEEEEEEECCCCCCCHC CS
  Glycos_transf_2  93 dpdwleklvea..lekdgadvvlgqrprifgetdeiern 129
                      + + +e+l ++  + +d+ d+ + +r+++f ++  ++  
       CCG92243.1  88 TSELIEQLKKPslYLQDQFDGYYIARVVRFLGKILKHGG 126
                      *****9998752233446666666666666666555555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.16
                      CCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHC CS
  Glycos_transf_2 121 getdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrealeel 169
                      g++de++++      +++++k++ ++l+++ + +i ++ l+  +++ +l
       CCG92243.1 197 GKKDEYKWAP----GSPIKRKKELKQLYYKFPPFIRPFLLFFYRYFIKL 241
                      5677777775....59999999999999999999999999999999876 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.6e-06     0.023       2      87 ..      11      90 ..      10      97 .. 0.69
   2 ?   -0.7   0.0      0.23     2e+03       6      31 ..     172     200 ..     168     204 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.6e-06
  Glyco_tranf_2_4  2 neadiLpeflahhlalgfdrilvydndstDgtrailkelpevkllhvdksyederrqvellkallarya.eadwvlvvDaDEflvvp 87
                     n ++++  +++  la+  ++++v+d  s+Dgt +il+++p      +++++e+ + q++   +++++   +  w l++DaDE l+++
       CCG92243.1 11 NSEKTIIPTIESSLAI-SNDVHVVDSYSSDGTIKILSSYPVHI---TQHPFENYAKQRN---WAIENLPlKMPWELHLDADERLTSE 90
                     5666666677777788.788******************75433...3334444444444...44443321469*********99986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.23
  Glyco_tranf_2_4   6 iLpeflahhlalg...fdrilvydndstD 31 
                       L+e+++ h ++    +++i++   +++D
       CCG92243.1 172 ELKEWIQRHNRWSdleVEEIWLRAAGKKD 200
                      58889987766544447888887776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1925.30
//
Query:       CCG92244.1  [L=316]
Description: Methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-06   27.1   0.0    3.7e-05   24.3   0.0    2.2  1  Methyltransf_11  Methyltransferase domain
    5.4e-06   26.3   0.0      1e-05   25.4   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    5.4e-06   27.0   0.0    0.00021   21.9   0.0    2.4  2  Methyltransf_25  Methyltransferase domain
     0.0004   21.1   0.0     0.0011   19.6   0.0    1.8  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.025   14.4   0.0    1.5  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0     1e-08   3.7e-05      18      95 ..     120     204 ..      66     205 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1e-08
                      TSEEEEEES-HHHH..HHHHHHCCHHT-...EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  18 garvvgvDlskeml..klakekaseegl...kvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvLkpgGllv 95 
                      + r + +D++++ +  k+++ ++++  +   + e+  +da++l f ++ fDl++s  v++h+    ++k++ +++ +L p G+ +
       CCG92244.1 120 FIRFYLFDITERKIleKAVELRGKKLTFsfsQDELYICDASELDFDSHLFDLIISEDVFEHIeiSSLKKLIFKMVHWLDPSGIAL 204
                      46788888888888655555555555557787788***************************888*****************986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.8e-09     1e-05       9     118 ..      48     206 ..      37     266 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.8e-09
  Methyltransf_23   9 lsdklerllpklraggrvLdiGcGtGillevl.rengfsvtgvDlspeaveiae........................................ 61 
                      ++ +l+  ++k  ++ r+L+iG G   l  vl + +g+++ gvDl++ +                                             
       CCG92244.1  48 YKNLLLLYSGKPIENTRILEIGFGPRPLRMVLlKSYGAKIKGVDLDSPLL---Ygkiseviniwkkngferaiksfirfylfditerkilekav 138
                      4555666667788999**********8755554999*********75432...13445888999999999998888888888888888888888 PP

  Methyltransf_23  62 .......kakkaqkdqf..deqeaaepqgkfdlIvlrevlehvp..dppellrqiatllkpgGyllls 118
                             +++++q++ +  d++e ++++  fdlI++ +v+eh++  ++ +l+ ++  +l p G +l++
       CCG92244.1 139 elrgkklTFSFSQDELYicDASELDFDSHLFDLIISEDVFEHIEisSLKKLIFKMVHWLDPSGIALIR 206
                      88877664444444444113335666777***************988****************99986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.062   2.2e+02       1      32 [.      65      95 ..      65     104 .. 0.90
   2 !   21.9   0.0     6e-08   0.00021      22      97 .]     121     201 ..     111     201 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.062
                     EEEET-TTSHHHHHHHCTSTSSEEEEEESSHH CS
  Methyltransf_25  1 vLdlGcGtGrltlalakrlgkakvtgvDisee 32
                     +L++G G+  l + l+k +g ak+ gvD+++ 
       CCG92244.1 65 ILEIGFGPRPLRMVLLKSYG-AKIKGVDLDSP 95
                     89******999999****98.*******9875 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 6e-08
                      SEEEEEESSHHHH.HHHHHHHHHTTT.....TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  22 akvtgvDiseeml.eaareraeeegl.....nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                       +++ +Di+e+ + e+a e    ++l     + e++ +da++l+f+++ fDl++s  +++h++ + l+k++ ++  +L p G
       CCG92244.1 121 IRFYLFDITERKIlEKAVELR-GKKLtfsfsQDELYICDASELDFDSHLFDLIISEDVFEHIEISSLKKLIFKMVHWLDPSG 201
                      678888998766514444443.444523444555677999***************777*********************998 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.1e-07    0.0011      19      98 ..     119     202 ..      99     203 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.1e-07
  Methyltransf_12  19 pdieytgvDispsai.edakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhl..kdirevldnirklLkpgGr 98 
                      ++i+++  Di ++ i e+a e   k+   ++++ el  +d+++ld   + fDl+++ +v++h+    +++++ ++ ++L p G+
       CCG92244.1 119 SFIRFYLFDITERKIlEKAVELRGKKLTFSFSQDELYICDASELDFDsHLFDLIISEDVFEHIeiSSLKKLIFKMVHWLDPSGI 202
                      689************86666666666667899999999999999999999*************999999***9***99999985 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   7.1e-06     0.025      29     110 ..     121     206 ..     108     265 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.1e-06
  Methyltransf_31  29 aevvGiDiseeaielArenaqklgldnveFeq.....gdieeleklledekfDlilsnevl..naladpdkileeiervlkpggillie 110
                      ++++++Di+e+ i     +++ ++l+ ++F+q     +d+ el+  +    fDli+s +v+    +++++k + ++   l p gi li+
       CCG92244.1 121 IRFYLFDITERKILEKAVELRGKKLT-FSFSQdelyiCDASELD--FDSHLFDLIISEDVFehIEISSLKKLIFKMVHWLDPSGIALIR 206
                      56899****99885555556666665.66666665558888888..9999***********8888999999999999999999988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2377.77
//
Query:       CCG92245.1  [L=1361]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-06   28.1   0.0     0.0093   16.0   0.0    4.4  4  NHL       NHL repeat
    1.9e-06   27.9   0.2    0.00015   21.8   0.0    2.7  3  CBM9_1    Carbohydrate family 9 binding domain-like
    5.8e-06   26.1   3.1    2.3e-05   24.1   0.1    2.8  3  FlgD_ig   FlgD Ig-like domain
    1.7e-05   24.6   0.0       0.26   10.9   0.0    3.3  3  SGL       SMP-30/Gluconolactonase/LRE-like region
      0.002   18.1   0.0     0.0044   17.0   0.0    1.5  1  EB_dh     Ethylbenzene dehydrogenase
  ------ inclusion threshold ------
      0.041   13.0   0.0      0.097   11.8   0.0    1.6  1  DUF5128   6-bladed beta-propeller
       0.41   11.0   2.2         18    6.0   0.0    4.6  4  Reg_prop  Two component regulator propeller


Domain annotation for each model (and alignments):
>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         6   1.5e+04      15      26 ..     298     309 ..     298     309 .. 0.85
   2 ?    2.6   0.0     0.062   1.6e+02       2      16 ..     545     559 ..     545     560 .. 0.92
   3 !   16.0   0.0   3.6e-06    0.0093       4      28 .]     586     611 ..     583     611 .. 0.89
   4 ?    3.8   0.0     0.026        66       6      20 ..     643     657 ..     640     674 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6
                 EEEEECCCTEEE CS
         NHL  15 iyVaDsenhrvq 26 
                 +++ D++ +r++
  CCG92245.1 298 LVIEDNKGNRIR 309
                 6899*9999985 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.062
                 SSEEEEEEETTTEEE CS
         NHL   2 nyPhGvavdsnGdiy 16 
                 n P+G++  +nG++y
  CCG92245.1 545 NKPTGIVTAPNGQLY 559
                 68***********98 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 3.6e-06
                 EEEEEEETTTEEEEEE.CCCTEEEEE CS
         NHL   4 PhGvavdsnGdiyVaD.senhrvqvF 28 
                 P G+avd+ G+iy++D  + + v+vF
  CCG92245.1 586 PIGIAVDQKGQIYISDwGRAMNVKVF 611
                 99**************8888888877 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.026
                 EEEEETTTEEEEEEC CS
         NHL   6 GvavdsnGdiyVaDs 20 
                 G+++d+ ++++V + 
  CCG92245.1 643 GICIDKENRLWVVEW 657
                 9***********874 PP

>> CBM9_1  Carbohydrate family 9 binding domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   5.8e-08   0.00015      33     182 ..      76     254 ..      64     257 .. 0.70
   2 ?    3.0   0.0     0.032        81      32      63 ..    1170    1203 ..    1155    1212 .. 0.84
   3 ?   -2.7   0.0       1.8   4.6e+03     116     181 ..    1284    1359 ..    1267    1361 .] 0.55

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 5.8e-08
                 EEEEEEE-SSEEEEEEEEE-SS----SSSG.......GGSSEEEEEEETT---....-SS--TTEE...EEEEETT--EEE-TT-...-GGGEEEEEEE CS
      CBM9_1  33 gtfkvlwdekaLYvlvevtDdvlndssadp.......wedDsvEiflDennsk....tteynandf...qyrvnldneasvdegkkkliaegvtsaskk 117
                  ++  ++d+++LY+l   +D+   ++  dp       w+ D+v   l ++ +       +y+ ++     +++++ +eas + + ++  + g+++a kk
  CCG92245.1  76 VEVASMYDQNYLYFLFCFQDPTPMENWIDPlfdpqggWKGDAVQLRLKNESTIvhitSWYYTPKQLpwvSLHFGMWDEASQSADVNDGRKMGIQVAFKK 174
                 456679****************999999999****************9887653221347777764222689999888874444444445555555555 PP

                 ET..TEEEEEEEEE-SS-.---TTEE........EEEEEEEEEE-TTS-EEEEEE.SS-SSS-T....TT-GGGSEEEEE CS
      CBM9_1 118 se..ggYivEaaiplktiatpaegkv........iGfdlainddddggtregiig.wsdttgnn....yqdpsvfGkltL 182
                 ++   gY  E+aip+k ++ ++ ++v        +G+++    ++ ++  e++ +  ++++       +++p  +Gk++ 
  CCG92245.1 175 NKdaKGYCQEMAIPWKVLGISSLNDVsfeklnllCGLEFFWGSQKSKNWPEHRYAdLVNPEYPRrsffWTNPLAWGKIVF 254
                 44449**********65544444443334444449999999997777666665441444444446799999999999876 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.032
                  EEEEEEEE-SSEEEEEE.EEE-SS.----SSSGG CS
      CBM9_1   32 sgtfkvlwdekaLYvlv.evtDdv.lndssadpw 63  
                  ++ + +++d+++LYv   +v+Dd  + +++++p+
  CCG92245.1 1170 KASASLTFDQQYLYVGFkDVSDDTpMINNGKNPF 1203
                  5778899********7637*****9999999996 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.8
                  EEETTEEEEEEEEE-SS-....---TTEEEEEEEEEEEE-TTS-EEEEEESS-SSS-T........TT-GGGSEEEE CS
      CBM9_1  116 kkseggYivEaaiplkti...atpaegkviGfdlainddddggtregiigwsdttgnn........yqdpsvfGklt 181 
                  +k++  Y   aaiplk +     p +     f + + d ++g+t+  ++ ws+ ++           +dp+ +Gkl+
  CCG92245.1 1284 QKETDKYSFYAAIPLKELgfyFIPGKTYYGDFGIIYSD-KNGTTDALRMFWSNKNTGMindlsiesAIDPKEWGKLI 1359
                  55555666666666666642222222222335555555.67777777777766555444556666667777777766 PP

>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1         1   2.7e+03      66      76 ..      71      81 ..      68      84 .. 0.83
   2 !   24.1   0.1   9.1e-09   2.3e-05      18      71 ..     290     343 ..     272     344 .. 0.81
   3 ?    1.0   0.0      0.15   3.9e+02      25      50 ..     527     551 ..     525     553 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1
                SEEEEEEEEEE CS
     FlgD_ig 66 dGaYtvkvtat 76
                +G+Y+v+v+++
  CCG92245.1 71 KGTYSVEVASM 81
                7*******987 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 9.1e-09
                 .ESSSEEEEEEEE-SS--EEEEE.EEEESSSEEEEEEE-SB-TTS-B--SEEEEE CS
     FlgD_ig  18 lpeaadevtvtikDasGevVrti.dlgaqsaGvvsftWdGtdndGnkladGaYtv 71 
                 lp++  +v++ i+D +G+ +r++ +  + +aG +   WdG+d++G k+++G+Y +
  CCG92245.1 290 LPSD-GNVSLVIEDNKGNRIRNLiSDVPRKAGRNVDWWDGKDEAGIKVPSGEYYL 343
                 5544.469************88614457888**********************86 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.15
                 EEEEEE-SS--EEEEEEEEESSSEEE CS
     FlgD_ig  25 vtvtikDasGevVrtidlgaqsaGvv 50 
                 +++ i D++G++++t++  +++ G+v
  CCG92245.1 527 NKILIVDEEGNLINTLSI-NKPTGIV 551
                 6899***********998.6666665 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0    0.0001      0.26      11     102 ..     516     600 ..     509     601 .. 0.87
   2 !    7.6   0.0   0.00096       2.5     184     220 ..     584     621 ..     574     629 .. 0.83
   3 !    5.8   0.0    0.0034       8.8     186     220 ..     641     677 ..     622     685 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
         SGL  11 egaLlwvDilgqrihrldpatgketvldtpesvGaiaprkdgrlvvasksglalldlasgeletladeeedekpllrfNDgvvdpdGrlwfG 102
                 +++++++   +++i  +d++++  ++l+++++ G+++  ++g+l++ s +g++ +d ++g+++++++ e     l  +  ++vd++G++++ 
  CCG92245.1 516 GNRIYCSLFFENKILIVDEEGNLINTLSINKPTGIVTA-PNGQLYAISGRGVVKID-QEGNITPFISTE-----LEAPIGIAVDQKGQIYIS 600
                 567777778899**************************.****************9.99******9984.....345666788888888875 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00096
         SGL 184 gepDGlavDaeGnvwvAvw.gggkvvrfdpdGklieei 220
                 ++p G+avD++G++++  w ++  v +f+++G  ++ei
  CCG92245.1 584 EAPIGIAVDQKGQIYISDWgRAMNVKVFSKEGVFLREI 621
                 4577***************55569********999987 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0034
         SGL 186 pDGlavDaeGnvwvAvw..gggkvvrfdpdGklieei 220
                 p G+++D+e+++wv  w  +  ++++++ +G+ ++e+
  CCG92245.1 641 PFGICIDKENRLWVVEWdrSPRRISVWASNGDFLTEY 677
                 569**************55555999999999988876 PP

>> EB_dh  Ethylbenzene dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.7e-06    0.0044      27      55 ..      71     166 ..      45     198 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.7e-06
                 ----EEEEEEEE-SSEEEEEEEEE----.................................................................... CS
       EB_dh  27 eevkpvtVkAaydgeniyfrleWkdptk...................................................................s 55 
                 +++ +v+V+++yd+ ++yf++ ++dpt+                                                                    
  CCG92245.1  71 KGTYSVEVASMYDQNYLYFLFCFQDPTPmenwidplfdpqggwkgdavqlrlknestivhitswyytpkqlpwvslhfgmwdeasqsadvndgrkM 166
                 67899***********************88877777777777777777777777777666666666666666666666555554444444444432 PP

>> DUF5128  6-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.8e-05     0.097      61      92 ..     593     625 ..     582     633 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
     DUF5128  61 vdkrifvlDsak.nnlfvFdkkGkfvrkIgaqG 92 
                  +++i++ D+ +  n+ vF+k+G f r+Ig++G
  CCG92245.1 593 QKGQIYISDWGRaMNVKVFSKEGVFLREIGKKG 625
                 5689********667*****************9 PP

>> Reg_prop  Two component regulator propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1         2   5.1e+03       4      17 ..     292     306 ..     289     308 .. 0.76
   2 ?    0.2   0.0      0.56   1.4e+03       9      23 ..     588     602 ..     584     603 .. 0.85
   3 ?    6.0   0.0     0.007        18       9      20 ..     643     654 ..     637     655 .. 0.91
   4 ?   -3.0   0.0         6   1.5e+04       5      16 ..    1031    1042 ..    1028    1042 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2
                 SS.CEEEEEE-TTSC CS
    Reg_prop   4 sn.nvtaileDsdGr 17 
                 s+ nv+ + eD++G+
  CCG92245.1 292 SDgNVSLVIEDNKGN 306
                 4449999999**995 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.56
                 EEEE-TTSCEEEEES CS
    Reg_prop   9 aileDsdGrlWvGte 23 
                  i+ D++G ++++ +
  CCG92245.1 588 GIAVDQKGQIYISDW 602
                 6899********866 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.007
                 EEEE-TTSCEEE CS
    Reg_prop   9 aileDsdGrlWv 20 
                  i+ D+++rlWv
  CCG92245.1 643 GICIDKENRLWV 654
                 69*********8 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 6
                  SCEEEEEE-TTS CS
    Reg_prop    5 nnvtaileDsdG 16  
                   ++ +i++D +G
  CCG92245.1 1031 LYIGSIFKDARG 1042
                  356677777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.91u 0.26s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 9114.47
//
Query:       CCG92246.1  [L=332]
Description: VPS10 repeats containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-10   40.8   8.6    1.4e-05   24.1   0.0    4.5  4  Sortilin-Vps10  Sortilin, neurotensin receptor 3,
    2.2e-10   40.3  10.8    3.1e-06   26.7   0.1    3.1  4  PSII_BNR        Photosynthesis system II assembly factor YCF4
    2.2e-09   35.9  23.3        0.2   11.8   0.4    7.0  7  BNR             BNR/Asp-box repeat
    0.00011   22.1   1.5      0.044   13.8   0.0    4.1  5  CHB_HEX_C       Chitobiase/beta-hexosaminidase C-terminal dom
    0.00024   20.4   9.7     0.0013   18.0   0.3    4.1  4  DUF4185         Domain of unknown function (DUF4185)
  ------ inclusion threshold ------
        4.7    7.2   6.4         17    5.5   0.0    3.4  4  UCR_UQCRX_QCR9  Ubiquinol-cytochrome C reductase, UQCRX/QCR9 


Domain annotation for each model (and alignments):
>> Sortilin-Vps10  Sortilin, neurotensin receptor 3,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   4.1   0.00025      0.74     378     434 ..      58     116 ..      54     122 .. 0.78
   2 !    3.7   0.1    0.0072        22     422     436 ..     144     158 ..     136     168 .. 0.83
   3 !    5.7   0.0    0.0018       5.3     405     439 ..     175     208 ..     172     215 .. 0.77
   4 !   24.1   0.0   4.8e-09   1.4e-05       5     119 ..     192     300 ..     189     304 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00025
                     EEEEESSSSSS-EEEESS-EEEEEEGGG..TEEEEEE-SSS-B-EEEEESSTTSSEEEE CS
  Sortilin-Vps10 378 dtfiSrDaGltWkevlkgahkyefGDqG..siivavkdeeketkelsYSlDeGktWeey 434
                      ++ S+D+G +W++v+++   y +   G   i ++   ++k+  +l+ S++ G+ Wee+
      CCG92246.1  58 GVYKSKDGGKSWQKVKHEGGWYHVQLTGprEIWLLEGSHGKAWGRLWHSTNDGEIWEEI 116
                     58999999999999999998888888883234444444667899999999999999875 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0072
                     EEESSTTSSEEEEE- CS
  Sortilin-Vps10 422 sYSlDeGktWeeykf 436
                     ++S+D+Gk+W+e  f
      CCG92246.1 144 HWSVDQGKSWKERTF 158
                     589999999999887 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0018
                     GTEEEEEE-SSS-B-EEEEESSTTSSEEEEE--SS CS
  Sortilin-Vps10 405 GsiivavkdeeketkelsYSlDeGktWeeykfsde 439
                     G +i +   + ++t  l  SlD+G+tW+e+ ++  
      CCG92246.1 175 GFVIYLLGTK-RPTPYLLKSLDSGETWNEVLLPLI 208
                     5577777777.59999999*********9988755 PP

  == domain 4  score: 24.1 bits;  conditional E-value: 4.8e-09
                     EESSTTSS-EE-GGGGTTEEBE-EEE-STTS--EEEEEES-EEEEESSTTSSEEEEE-SS-BS...S--EEESSETTEEEEE.......BTTS-E CS
  Sortilin-Vps10   5 iSeDeGktwkkvkeklkgeaiqeivvhpfdkkkaylltdskklyvttDrGktwkkfklpfkpslsaeplsfhakdkdwlialgekkeskdckkka 99 
                      S D+G+tw++v   l ++   ++++ +  k  +    d++k+++t+D G++w+ ++lp+++   ++ l f++    +  +++   +     + +
      CCG92246.1 192 KSLDSGETWNEVLLPLINSYPYSLFFATSWKGWIG--LDGGKILYTEDGGENWQVYQLPTNRP--VTALWFDPLGRGYAAVQN--GNYLMLAESL 280
                     68899999999986444444435555554444333..479********************999..8********999999994..555567799* PP

                     EEESSTTSSEEEEESSEEEE CS
  Sortilin-Vps10 100 yystdggkswkklqesvkkc 119
                     ++++dggkswk++ + +k++
      CCG92246.1 281 FMTEDGGKSWKLVLSGAKQI 300
                     *************9988865 PP

>> PSII_BNR  Photosynthesis system II assembly factor YCF48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.4   2.1e-06    0.0063     228     270 ..      32      73 ..      12      97 .. 0.70
   2 !   12.5   7.2   2.2e-05     0.066      19     105 ..      39     123 ..      32     155 .. 0.71
   3 !   15.7   0.2   2.3e-06     0.007      32     137 ..     179     242 ..     130     243 .. 0.49
   4 !   26.7   0.1     1e-09   3.1e-06      32     142 ..     179     295 ..     161     304 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.1e-06
                 TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-G CS
    PSII_BNR 228 piksngyglldlayrdekeiwvaGGsgtllvskDgGktwkkdk 270
                 +++s +  lld+++ d++  w +G  g +++skDgGk+w+k k
  CCG92246.1  32 KERSFTGQLLDIQFWDDQIGWTCGY-GGVYKSKDGGKSWQKVK 73 
                 4444455677777777777776653.44677777777777644 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2.2e-05
                 -EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S--.--EEEEEEEET.TEEEEE....EET.TEEEEESSTTSS-EE----TT-SS CS
    PSII_BNR  19 tllDiaftdekhGflvGtkatlletlDGGktWeersldleeevnyrlesvsfkg.degwiv....GkP.slllhttdgGksWerikLsekLPG 105
                 +llDi+f d++ G+  G    ++ ++DGGk+W++ + +          +v+++g  e w++    Gk    l h+t++G+ We i L  kL G
  CCG92246.1  39 QLLDIQFWDDQIGWTCGYG-GVYKSKDGGKSWQKVKHEGG------WYHVQLTGpREIWLLegshGKAwGRLWHSTNDGEIWEEI-LPGKLQG 123
                 789***********99975.579999******97553332......345555553577775433344324689999999999988.4445555 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 2.3e-06
                 EEEETTT...EEEEESSTTSS-EE-----S--.--EEEEEEEETTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--E CS
    PSII_BNR  32 flvGtka...tlletlDGGktWeersldleeevnyrlesvsfkgdegwivGkPslllhttdgGksWerikLsekLPGePllitalgkkkaelvtdvgai 127
                 +l+Gtk+    ll +lD G+tW+e  l l ++                                              P+ +    + k  +  d g i
  CCG92246.1 179 YLLGTKRptpYLLKSLDSGETWNEVLLPLINS---------------------------------------------YPYSLFFATSWKGWIGLDGGKI 232
                 34455442223555555555555555555554.............................................4555544444455555555555 PP

                 EEESSTTSSE CS
    PSII_BNR 128 YrtedagknW 137
                   ted+g+nW
  CCG92246.1 233 LYTEDGGENW 242
                 5555555555 PP

  == domain 4  score: 26.7 bits;  conditional E-value: 1e-09
                 EEEETTT...EEEEESSTTSS-EE-----S--.--EEEEEEEETTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT... CS
    PSII_BNR  32 flvGtka...tlletlDGGktWeersldleeevnyrlesvsfkgdegwivGkPslllhttdgGksWerikLsekLPGePllitalgkkkaelvtdv... 124
                 +l+Gtk+    ll +lD G+tW+e  l l ++  y+l     +   gwi  +   +l+t+dgG++W+  +L ++ P + l    lg+  a +   +   
  CCG92246.1 179 YLLGTKRptpYLLKSLDSGETWNEVLLPLINSYPYSL--FFATSWKGWIGLDGGKILYTEDGGENWQVYQLPTNRPVTALWFDPLGRGYAAVQNGNylm 275
                 578998744469****************999955554..44456689**999999************************99999999988776544344 PP

                 ..--EEEESSTTSSEEEEE- CS
    PSII_BNR 125 ..gaiYrtedagknWkaqve 142
                    +++ ted+gk+Wk   +
  CCG92246.1 276 laESLFMTEDGGKSWKLVLS 295
                 44789**********97665 PP

>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.4   6.6e-05       0.2       1      12 []      60      71 ..      60      71 .. 0.90
   2 ?    2.5   0.3      0.08   2.4e+02       1      11 [.     104     114 ..     104     115 .. 0.87
   3 !    9.9   0.4   0.00029      0.86       2      11 ..     145     154 ..     144     155 .. 0.89
   4 !    5.8   0.0    0.0063        19       3      11 ..     193     201 ..     191     202 .. 0.88
   5 ?   -3.2   0.1       5.8   1.7e+04       5       8 ..     228     231 ..     227     231 .. 0.84
   6 !    9.9   0.0   0.00029      0.86       2      11 ..     234     243 ..     233     244 .. 0.92
   7 !    9.3   0.0   0.00046       1.4       2      12 .]     282     292 ..     281     292 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.6e-05
                EEESSTTSS-EE CS
         BNR  1 yyStDgGktWsk 12
                y S+DgGk+W+k
  CCG92246.1 60 YKSKDGGKSWQK 71
                67********96 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.08
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 ++St+ G+ W+
  CCG92246.1 104 WHSTNDGEIWE 114
                 78*****9987 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00029
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                 +S D+Gk+W+
  CCG92246.1 145 WSVDQGKSWK 154
                 8********8 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0063
                 ESSTTSS-E CS
         BNR   3 StDgGktWs 11 
                 S D G+tW+
  CCG92246.1 193 SLDSGETWN 201
                 89******7 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 5.8
                 STTS CS
         BNR   5 DgGk 8  
                 DgGk
  CCG92246.1 228 DGGK 231
                 9**7 PP

  == domain 6  score: 9.9 bits;  conditional E-value: 0.00029
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                 y+ DgG++W+
  CCG92246.1 234 YTEDGGENWQ 243
                 9********8 PP

  == domain 7  score: 9.3 bits;  conditional E-value: 0.00046
                 EESSTTSS-EE CS
         BNR   2 yStDgGktWsk 12 
                  + DgGk+W++
  CCG92246.1 282 MTEDGGKSWKL 292
                 689******85 PP

>> CHB_HEX_C  Chitobiase/beta-hexosaminidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.029        87      40      53 ..      62      75 ..      58      91 .. 0.83
   2 ?   -0.3   0.0      0.37   1.1e+03      39      51 ..     145     157 ..     143     171 .. 0.83
   3 ?   -1.6   0.0      0.93   2.8e+03      40      50 ..     193     203 ..     191     206 .. 0.87
   4 !   13.8   0.0   1.5e-05     0.044      32      55 ..     227     248 ..     224     259 .. 0.82
   5 ?   -2.6   0.0       1.8   5.4e+03      40      49 ..     283     292 ..     281     301 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.029
   CHB_HEX_C 40 sldggetwqkytay 53
                s dgg++wqk++++
  CCG92246.1 62 SKDGGKSWQKVKHE 75
                78********9965 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.37
   CHB_HEX_C  39 Ysldggetwqkyt 51 
                 +s+d+g++w++ t
  CCG92246.1 145 WSVDQGKSWKERT 157
                 699******9866 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.93
   CHB_HEX_C  40 sldggetwqky 50 
                 sld getw+++
  CCG92246.1 193 SLDSGETWNEV 203
                 79******875 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 1.5e-05
   CHB_HEX_C  32 lPGltieYsldggetwqkytayep 55 
                 l+G +i Y+ dgge+wq y+   p
  CCG92246.1 227 LDGGKILYTEDGGENWQVYQL--P 248
                 7899***************93..3 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 1.8
   CHB_HEX_C  40 sldggetwqk 49 
                 + dgg++w+ 
  CCG92246.1 283 TEDGGKSWKL 292
                 6799999974 PP

>> DUF4185  Domain of unknown function (DUF4185)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3   4.5e-07    0.0013     103     145 ..      33      75 ..      14      89 .. 0.83
   2 ?    0.8   0.5     0.076   2.3e+02     124     141 ..      98     115 ..      81     185 .. 0.78
   3 ?   -1.0   0.0      0.27   8.1e+02     129     142 ..     190     203 ..     186     206 .. 0.87
   4 !    4.9   0.0    0.0043        13     127     151 ..     230     254 ..     212     299 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.5e-07
     DUF4185 103 ggtqylsymsvrswgapgewttnysaiaksdDngetWekvpes 145
                 +++   +++ ++ w+++  wt  y++++ks+D+g++W+kv+++
  CCG92246.1  33 ERSFTGQLLDIQFWDDQIGWTCGYGGVYKSKDGGKSWQKVKHE 75 
                 5555556778899***888********************9876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.076
     DUF4185 124 tnysaiaksdDngetWek 141
                   ++++++s+++ge We+
  CCG92246.1  98 KAWGRLWHSTNDGEIWEE 115
                 557788888888888876 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.27
     DUF4185 129 iaksdDngetWekv 142
                 ++ks D+getW++v
  CCG92246.1 190 LLKSLDSGETWNEV 203
                 679********875 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0043
     DUF4185 127 saiaksdDngetWekvpesvrtnsd 151
                 ++i++ +D+ge+W++++  ++    
  CCG92246.1 230 GKILYTEDGGENWQVYQLPTNRPVT 254
                 589***********99876554444 PP

>> UCR_UQCRX_QCR9  Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.3     0.032        96      35      52 ..      58      75 ..      49      75 .. 0.84
   2 ?    5.5   0.0    0.0055        17      30      49 ..      97     116 ..      91     118 .. 0.85
   3 ?   -1.3   0.3      0.73   2.2e+03      40      47 ..     147     154 ..     144     155 .. 0.82
   4 ?   -2.2   0.0       1.4   4.2e+03      35      47 ..     279     291 ..     275     293 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.032
                    HHHHHHTTTTSHHHHTGG CS
  UCR_UQCRX_QCR9 35 kiWdsiNkGKlWkDIkhk 52
                     +++s   GK W+ +kh+
      CCG92246.1 58 GVYKSKDGGKSWQKVKHE 75
                    58999999********95 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0055
                     HHHHHHHHHHHTTTTSHHHH CS
  UCR_UQCRX_QCR9  30 DsatdkiWdsiNkGKlWkDI 49 
                      +a+ ++W s N G  W++I
      CCG92246.1  97 GKAWGRLWHSTNDGEIWEEI 116
                     678899***********998 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.73
                     HTTTTSHH CS
  UCR_UQCRX_QCR9  40 iNkGKlWk 47 
                     + +GK Wk
      CCG92246.1 147 VDQGKSWK 154
                     679****9 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.4
                     HHHHHHTTTTSHH CS
  UCR_UQCRX_QCR9  35 kiWdsiNkGKlWk 47 
                     +++ +   GK Wk
      CCG92246.1 279 SLFMTEDGGKSWK 291
                     667777789***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 2664.94
//
Query:       CCG92247.1  [L=448]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        8.4    6.3   8.3        1.9    8.4   2.3    2.3  2  EOS1      N-glycosylation protein


Domain annotation for each model (and alignments):
>> EOS1  N-glycosylation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.4     0.024   4.3e+02      29      94 ..     174     236 ..     145     254 .. 0.63
   2 ?    8.4   2.3   0.00011       1.9       4      81 ..     328     407 ..     325     410 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.024
        EOS1  29 WlvyYsilaaliRll.slqaiiwplvllllsvlsadkeqplaaWivisttltlseivqswvtSnlad 94 
                 Wl ++s l  l+ l+  l  i  p+ l++l +l+    + l  W + +++l   +i ++ +t nl++
  CCG92247.1 174 WLQTFSPLFRLVFLIiILYFIRYPVNLITLLSLDLV-AYGL-GWFLSGSFL--RKIQNRLLTNNLNS 236
                 555555444444332134445555555555555554.4554.588888775..56667777777764 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00011
        EOS1   4 yvlaslWslvs..aylayslldsLlvrWlvyYsilaaliRllslqaiiwplvllllsvlsadkeqplaaWivisttltls 81 
                 +++as++ ++s  +y +y +    +  ++  Y+ +  +  + ++  ii +l  ++ls+ ++++++++ +Wi+ + +l +s
  CCG92247.1 328 FFIASVYPFLSffLYGVYIIGSKHFHHYVFEYPNTFIIFLITAFFGIIYSLLDIILSSWGQANHRFISSWILAGKILIFS 407
                 77888888877224568999999999999*****999999*********************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3456.16
//
Query:       CCG92248.1  [L=403]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-40  137.7   0.2    4.6e-40  137.0   0.2    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    2.1e-29  102.7   0.0    3.1e-29  102.1   0.0    1.3  1  Glyco_trans_1_4  Glycosyl transferases group 1
    5.9e-15   55.7   0.0    1.2e-14   54.7   0.0    1.5  2  Glyco_transf_4   Glycosyltransferase Family 4
    2.3e-07   31.4   0.0    7.8e-07   29.7   0.0    1.8  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    4.8e-07   30.1   0.0    8.9e-07   29.2   0.0    1.4  1  Glyco_trans_1_2  Glycosyl transferases group 1
    1.7e-05   24.9   0.6    5.9e-05   23.1   0.6    1.9  1  Glyco_trans_4_2  Glycosyl transferase 4-like
     0.0016   17.4   0.0     0.0022   16.9   0.0    1.2  1  Epimerase_2      UDP-N-acetylglucosamine 2-epimerase
  ------ inclusion threshold ------
       0.01   15.4   0.3       0.21   11.1   0.1    2.5  3  Peripla_BP_4     Periplasmic binding protein domain


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.2     2e-43   4.6e-40      14     170 ..     212     368 ..     195     369 .. 0.95

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 2e-43
                      T-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES...STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS CS
  Glycos_transf_1  14 kkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG..ngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEgf 105
                      + ki+l+ gr++ +Kg++lli af ++ k+ +++v l++aG  n+ + k+++k++ e++l++nvif+g +  e++++ll  ad+f+lps++E f
       CCG92248.1 212 ESKILLFFGRINFKKGLNLLIPAFSQIIKK-HEDVTLILAGpdNEGYGKKVSKWINEYNLEKNVIFTGMITGEKKKALLADADVFILPSYTENF 304
                      689************************888.*************************************************************** PP

                      -HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHH CS
  Glycos_transf_1 106 GivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenar 170
                      Gi+++EAmaag+pvi+s+   +   vk+g  G++v  n ++++a+a ++ll+d+ lr+ +gen++
       CCG92248.1 305 GIAVVEAMAAGIPVIISDKVNIWREVKEGNAGIVVSCN-VQEIAKACIELLSDDTLRHTMGENGK 368
                      ******************99999999********9999.************************97 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.0   1.4e-32   3.1e-29       2     134 .]     214     356 ..     213     356 .. 0.87

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 1.4e-32
                      EEEEEES---GG.GTHHHHHHHHHHHH.H.H.EEEEEES---.....HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--..---S CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllrkk.d.vrlvivGdgprp...eeleelaa..gleerveftGfv..edlaellaaadvfvaPs..egfg 84 
                      +++lf+Gr++ + kg+ ll+ a+ ++ kk + v+l+++G ++ +   +++ + ++  +le++v+ftG +  e++++lla+advf++Ps  e fg
       CCG92248.1 214 KILLFFGRINFK-KGLNLLIPAFSQIIKKhEdVTLILAGPDN-EgygKKVSKWINeyNLEKNVIFTGMItgEKKKALLADADVFILPSytENFG 305
                      789******656.**********766666436*******543.23457888888679999*********9999****************99*** PP

                      HHHHHHHHTT-EEEE-TGGGT.TT--.TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  85 lkllEamaaglpvVatdvggi.aevv.gengllvppgdpealaeailrLled 134
                      ++++Eamaag+pv+ +d   i +ev  g++g++v+  +++++a+a+++Ll+d
       CCG92248.1 306 IAVVEAMAAGIPVIISDKVNIwREVKeGNAGIVVS-CNVQEIAKACIELLSD 356
                      ****************875544998899******6.58************98 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   5.2e-18   1.2e-14       2     169 ..      15     194 ..      14     195 .. 0.77
   2 ?   -3.5   0.0         4     9e+03      84     101 ..     304     320 ..     283     321 .. 0.53

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 5.2e-18
  Glyco_transf_4   2 GGverhvleLaraLarrGheVtvvtpgddgpleeev..........elvvrvprvpl.pllkrllrslaflrrlrrllkre..kpDvv..Hahsp 81 
                     GG  + +l+ araLa+rGh+Vt++t +d +++  +v          ++++++ ++ l +++  llr + f+  l++ l +   k+D++   + + 
      CCG92248.1  15 GGPTVACLNQARALADRGHKVTIYTTNDYDDSLLKVplnqtyqnikKDGYEISYFSLtFHSISLLRKYYFSIPLKQTLSETilKYDIIyiYSLYR 109
                     9999********************8877777777777*********7777777776515666788899999999999999899*****6433344 PP

  Glyco_transf_4  82 aalgaallalrrrlgiplVltvHglyekrllkarlkplsrllralerrl....lrradrviavSeatadelrerygvppekitVipnGvDle 169
                     ++    + ++r+ ++ip+V+  Hg+ ++ l k++++ + + +r     +    l++a ++  +S ++++ +   ++++ ++  +ip G+D++
      CCG92248.1 110 FPPTITAYYARK-YQIPYVINPHGSLDPFLFKKKRWIKFPHERL----FdfpnLNHASAIHFTSLEEQQLVTP-LKLK-SPGIIIPLGIDVK 194
                     444455555555.*************644444444444444443....24456********************.9999.7999*******86 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4
  Glyco_transf_4  84 lgaallalrrrlgiplVl 101
                     +g a++ +++  gip+++
      CCG92248.1 304 FGIAVVEAMA-AGIPVII 320
                     2344444444.7888775 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   3.5e-10   7.8e-07       1     140 [.      15     171 ..      15     182 .. 0.74
   2 ?   -1.7   0.0       1.5   3.4e+03      73     101 ..     291     320 ..     286     321 .. 0.65

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.5e-10
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapg..........apeleedgvrvhrlpvprrp.spladlaalralrrllrqrrerpdvvhahspt 83 
                      gG ++ + + araLa+rGh Vt++t++++ +           + +  dg ++  + +  ++ s+l+ + ++  l+++l+    ++d++++ s++
       CCG92248.1  15 GGPTVACLNQARALADRGHKVTIYTTNDYDDsllkvplnqtYQNIKKDGYEISYFSLTFHSiSLLRKYYFSIPLKQTLSETILKYDIIYIYSLY 108
                      89999********************9999997777776553223668888888877665544677778888889999977899*******9955 PP

  Glyco_trans_4_4  84 ...aglaarlarrrrgiplvvtlhglllrrgsgavrrlyral.er....rllrradavlvvseae 140
                           + a  ar +  ip+v+++hg l +     ++r+++   er      l++a a++ +s +e
       CCG92248.1 109 rfpPTITAYYAR-KYQIPYVINPHGSLDPF-LFKKKRWIKFPhERlfdfPNLNHASAIHFTSLEE 171
                      454668888889.9**********976543.4455566644423344447777777777777655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.5
  Glyco_trans_4_4  73 rpdvvhahspt..aglaarlarrrrgiplvv 101
                        dv ++ s+t   g+a++ a  ++gip+++
       CCG92248.1 291 DADVFILPSYTenFGIAVVEAM-AAGIPVII 320
                      5688888887764444444444.88999986 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0     4e-10   8.9e-07       3      90 ..     296     384 ..     294     386 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 4e-10
  Glyco_trans_1_2   3 LnpsrsespnlrlfEaaacGafaltddaegleelftpgkevilfe.dleelaekiryllanpeerraiaeaarervlaehtydhraeql 90 
                      + ps  e +   ++Ea+a+G++++ +d   + + +++g+ +i+++ +++e+a++  +ll+++ +r+ ++e+++  +++ ++ ++ a++l
       CCG92248.1 296 ILPSYTENFGIAVVEAMAAGIPVIISDKVNIWREVKEGNAGIVVScNVQEIAKACIELLSDDTLRHTMGENGKIIAENLFSIENTAKKL 384
                      5677788899999************************************************************9999999999998877 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.6   2.6e-08   5.9e-05      11     139 .]      19     168 ..       7     168 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.6e-08
  Glyco_trans_4_2  11 vhtlrlakeLakrgyeVhvitpkkga.kdeleaegihvhrlkvd...........rkgpleylka.......fklkklikk..ikPDvvhahya 83 
                      v +l+ a++La+rg++V++ t ++   +  ++  + + +++k+d           +  +++   +       + lk+ + +  +k+D+++++  
       CCG92248.1  19 VACLNQARALADRGHKVTIYTTNDYDdSLLKVPLNQTYQNIKKDgyeisyfsltfH--SIS---LlrkyyfsIPLKQTLSEtiLKYDIIYIYSL 107
                      4578889***************8887577778999999***999999644443221..333...13333433566777766446******9988 PP

  Glyco_trans_4_2  84 ..kpygllgslaarlsgvipvvlsvwGldv.lkfpkksklkkl....llkl.alkkatkvistn 139
                         p+ + ++ a r+ + ip+v++ +G+   + f+kk  + k+    l+ + +l++a+++ +t+
       CCG92248.1 108 yrFPPTITAYYA-RKYQ-IPYVINPHGSLDpFLFKKKR-WIKFpherLFDFpNLNHASAIHFTS 168
                      666667888776.6665.*********95567776666.3333344599999999999999986 PP

>> Epimerase_2  UDP-N-acetylglucosamine 2-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   9.6e-07    0.0022     197     327 ..     227     364 ..     159     386 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 9.6e-07
                  HHHHHHHHHHHHHHHHH.H--EEEEE--..HHHHHHHHHHHHH-T...TEEEE----HHHHHHHHHC-SEEEES-.....H.HHHHHHHHCT--EEES CS
  Epimerase_2 197 perlkeilealkalake.kdvevvvpvhnnprtrkrlleeleele...nvtlieplgyldflsllknaklvltdS.....g.GiqeEapslgvpvvnl 284
                     l+ ++ a++++ k+ +dv++++  + n+  +k++ + ++e++   nv+++  +  ++  +ll++a++ +  S     g  +  Ea++ g+pv+  
   CCG92248.1 227 G--LNLLIPAFSQIIKKhEDVTLILAGPDNEGYGKKVSKWINEYNlekNVIFTGMITGEKKKALLADADVFILPSytenfGiAVV-EAMAAGIPVIIS 321
                  4..777888999999999*******************99999997789*********************9985444443388888.***********9 PP

                  SSS-S-THHHHTTSEEE-TT-HHHHHHHHHHHCT-..--.... CS
  Epimerase_2 285 ReeteRpegveagtnvlvgtdkeeIvaaleklledkkelekma 327
                   +   + e  e ++ ++v+ + +eI +a+ +ll+d++  ++m 
   CCG92248.1 322 DKVNIWREVKEGNAGIVVSCNVQEIAKACIELLSDDTLRHTMG 364
                  66667777777777777****************9955554444 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.46     1e+03     198     246 ..      24      70 ..      18      73 .. 0.79
   2 ?    1.4   0.0     0.086   1.9e+02     177     229 ..     237     292 ..     234     309 .. 0.74
   3 ?   11.1   0.1   9.3e-05      0.21      68     153 ..     303     396 ..     285     402 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.46
                   HHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHH CS
  Peripla_BP_4 198 alealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaa 246
                    ++al++ g++  +  t++D+++  l+   + t++  + +d ye+ y +
    CCG92248.1  24 QARALADRGHKVTI-YTTNDYDDSLLKVPLNQTYQ-NIKKDGYEISYFS 70 
                   57899999976665.99999999999999999988.8888888888765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.086
                   HHHHTT.TECEEEESSCCHHHC..HHHHHHHTTTTSTEEEEEES-HHHHHHHHHTT CS
  Peripla_BP_4 177 alltan.pldgilaandgmaeg..alealeaaglagkvvvtgqDatpealeaikdG 229
                   ++++++ ++  ila  d+ ++g  + +++++ +l + v++tg+ + ++ +++++d 
    CCG92248.1 237 QIIKKHeDVTLILAGPDNEGYGkkVSKWINEYNLEKNVIFTGMITGEKKKALLADA 292
                   67777755888988555555544599999999999998777776666666666665 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 9.3e-05
                   HHHHHHHHHHHTT-EEEEESTT....GCTTT-CEEEEEC-HHHHHHHHHHHHHHHCTTH.....EEEEEETSCCCHHHHHHHHHHHHHHHHH-T CS
  Peripla_BP_4  68 alapalkkakaaGIpVvafdsd....dapsgerlayvgfdneaaGelqaeylaeklggk....kgkvvilaGspgdpnaeeriegfrkvlkeyp 153
                   +   a+ +a+aaGIpV+  d      + ++g+   +v+ + +++++++ e+l +    +     gk+++ + +   + a++ +e f++++k+y+
    CCG92248.1 303 NFGIAVVEAMAAGIPVIISDKVniwrEVKEGNAGIVVSCNVQEIAKACIELLSDDTLRHtmgeNGKIIAENLFSIENTAKKLEESFIEIIKKYK 396
                   55568889**********99999999889999999**************877766555555545888866655556666667888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2853.21
//
Query:       CCG92249.1  [L=463]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.2   0.3       0.14   12.2   0.3    2.9  3  DUF478    Protein of unknown function (DUF478)


Domain annotation for each model (and alignments):
>> DUF478  Protein of unknown function (DUF478)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.14   2.5e+03      39      64 ..      18      43 ..      16      47 .. 0.73
   2 ?   -2.6   0.2      0.34   6.1e+03      48      63 ..     245     260 ..     227     264 .. 0.67
   3 ?   12.2   0.3   7.9e-06      0.14       6      39 ..     410     443 ..     407     450 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.14
      DUF478 39 sgrervlkrssylvilnllllrGfle 64
                 g+++ l     ++i+ lll  G l 
  CCG92249.1 18 LGKKKQLLTRILIIIYVLLLTEGILR 43
                56777777777888999999888775 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.34
      DUF478  48 ssylvilnllllrGfl 63 
                 s    il +l+l+G l
  CCG92249.1 245 SRMAFILCFLVLVGSL 260
                 4455688888888865 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 7.9e-06
      DUF478   6 ytytnPvlfWGvfevrGtskGvGviltrffwvfs 39 
                 y++  P+lf G    +Gt+ G G i+t f  v s
  CCG92249.1 410 YSFVGPILFNGQITSQGTANGYGWIFTGFCLVAS 443
                 78999************************97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       917  (0.0511462); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 2716.21
//
Query:       CCG92250.1  [L=345]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-26   92.1   0.0    4.4e-26   91.5   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    3.5e-21   76.0   0.0    9.6e-21   74.6   0.0    1.7  2  Glyco_trans_1_4  Glycosyl transferases group 1
    6.9e-06   26.2   0.1    0.00019   21.5   0.1    2.6  2  Glyco_transf_4   Glycosyltransferase Family 4
     0.0056   17.0   0.0       0.01   16.2   0.0    1.4  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.0   9.7e-30   4.4e-26      12     167 ..     160     313 ..     150     325 .. 0.92

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 9.7e-30
                      TTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS.BS CS
  Glycos_transf_1  12 nekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis.Eg 104
                       +++k +l+vgr++  Kg   ++ka+ llk+ ++ ++   ++G g+ee++l + +++  l+ +v +lg + ++++  l+kn +i+v+psi+ E+
       CCG92250.1 160 ENRPKDLLFVGRMVSGKGAIDVLKALMLLKQ-EKIDLTASFVGYGPEEENLMAFIKANDLEQRVDILGPKTQQEVADLMKNHKILVVPSIYdEP 252
                      457889*********************9976.5************************************************************* PP

                      S-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHH CS
  Glycos_transf_1 105 fGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlge 167
                      fGiv+lE +a+g+ vi s  gg++e + +   Gl ++++++  la +i+++++++el + l+ 
       CCG92250.1 253 FGIVALEGIASGCVVIGSERGGLKEAIGPC--GLTYPNGDVYLLASKIKEVIKNPELFHSLRF 313
                      ***************************985..5999999****************88766654 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.71   3.2e+03       4      75 ..       8      38 ..       5      60 .. 0.63
   2 !   74.6   0.0   2.1e-24   9.6e-21       2     134 .]     164     304 ..     163     304 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.71
                     EEEES--.-GG.GTHHHHHHHH.HHHH.HHEEEEEES---..HHHHHHHTT-T.TEEEE---THHHHHHHH-SE CS
  Glyco_trans_1_4  4 ilfvGrl.eenvkgvdllleav.pllrkkdvrlvivGdgprpeeleelaagleerveftGfvedlaellaaadv 75
                     +lf++ + ++++ g++ +++ + ++l+kkd                                           +
       CCG92250.1  8 LLFTSYYfWPHIGGMETFAQVLaQELAKKD-------------------------------------------L 38
                     666666656667777777777766666554...........................................2 PP

  == domain 2  score: 74.6 bits;  conditional E-value: 2.1e-24
                      EEEEEES---GG.GTHHHHHHHHHHHH.HH..EEEEEES---..HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--...---SHH CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllrkkd..vrlvivGdgprpeeleelaa..gleerveftGfv..edlaellaaadvfvaPs...egfglk 86 
                      +++lfvGr++   kg+  +l+a+ ll++++  ++  +vG gp++e+l + ++  +le+rv ++G    +++a+l+++++++v+Ps   e fg++
       CCG92250.1 164 KDLLFVGRMVSG-KGAIDVLKALMLLKQEKidLTASFVGYGPEEENLMAFIKanDLEQRVDILGPKtqQEVADLMKNHKILVVPSiydEPFGIV 256
                      689******655.**************8844599999999995569988776679999******998788*****************99***** PP

                      HHHHHHTT-EEEE-TGGGTTT--TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvggiaevvgengllvppgdpealaeailrLled 134
                      +lE  a+g+ v+ ++ gg++e++g  gl  p+gd+  la +i +++++
       CCG92250.1 257 ALEGIASGCVVIGSERGGLKEAIGPCGLTYPNGDVYLLASKIKEVIKN 304
                      *******************************************99876 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   4.1e-08   0.00019       1     167 [.      19     150 ..      19     153 .. 0.83
   2 ?   -3.9   0.0       2.6   1.2e+04      59      75 ..     179     195 ..     163     196 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 4.1e-08
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvv.Hahspaalgaallalrrr 94 
                     +GG+e+++  La++La++   ++v+t++  ++ ++e               + +++ ++ +  +  ll  ++ Dv+ H h ++ l++a   ++  
      CCG92250.1  19 IGGMETFAQVLAQELAKKDLFISVLTST--PHVGKE---------------QFPYQVIRTINPFNILLVTFNADVIlHNHLSIKLCWA--SAL-- 92 
                     69****************9999999844..444444...............56788899999999999999*****999987777555..444.. PP

  Glyco_transf_4  95 lgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvD 167
                     l++p+ + + ++            ++ +   + +++l++a+ ++ vS+a+ d+l       ++k  Vipn  D
      CCG92250.1  93 LNKPYGIIIQNWL----------SFKGIKGIFHKWILKKAKITVGVSQAIVDHLPY-----KAKTIVIPNLFD 150
                     8****99999999..........688888999999*****************9988.....378899999777 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.6
  Glyco_transf_4  59 aflrrlrrllkrekpDv 75 
                       ++++  llk+ek+D+
      CCG92250.1 179 IDVLKALMLLKQEKIDL 195
                     55677888999999997 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.3e-06      0.01       5      82 ..     246     323 ..     237     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.3e-06
  Glyco_trans_1_2   5 psrses.pnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaeht 82 
                      ps +++ +  + +E  a+G++++ +++ gl e + p   ++++   d+  la ki+++++npe+ ++++ +a+e+ l+++t
       CCG92250.1 246 PSIYDEpFGIVALEGIASGCVVIGSERGGLKEAIGPC--GLTYPngDVYLLASKIKEVIKNPELFHSLRFHAKEH-LKKYT 323
                      566644488899*********************9666..999999999**************************9.77776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2502.07
//
Query:       CCG92251.1  [L=454]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3343.32
//
Query:       CCG92252.1  [L=322]
Description: ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-35  122.0  12.4    2.3e-35  122.0  12.4    1.7  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.022   14.8   0.9      0.022   14.8   0.9    2.7  3  Trep_Strep    Hypothetical bacterial integral membrane protei


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.18   1.6e+03      31      66 ..      14      25 ..       2      89 .. 0.64
   2 !  122.0  12.4   2.6e-39   2.3e-35       1     183 [.     114     318 ..     114     320 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.18
  BPD_transp_1 31 Psfv..laillvlvfvilsilghlilpviillllsaap 66
                  P ++                             ++ ++
    CCG92252.1 14 PLLLgvT--------------------------FMVFF 25
                  2222211..........................11111 PP

  == domain 2  score: 122.0 bits;  conditional E-value: 2.6e-39
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.......................vilsilghlilpviillllsaapyvrlirra 74 
                   +i++G+l+a ++ + ld+l+++l ++  s+P f la+l v+++                       ++ +i++hl+lp ++l++ + a ++r++r +
    CCG92252.1 114 AIPIGVLSAIYKDSLLDRLSSFLAYISISFPEFFLALLAVYFAartgwfpiggltsieypflspidKLVDIAYHLVLPTLVLGIGGVANMMRIMRGS 210
                   69**************************************988****************************************************** PP

  BPD_transp_1  75 alrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlv 171
                   +l+++  d+v +ara+G+++  +++++vl+na+ p+i++++++++gll g++l+e ++++pG+g+l+ +a++ +d    + g+v++  ++++l nl+
    CCG92252.1 211 FLDAIRADYVLTARAKGLPENAVMFRHVLRNAINPLISTFGYVIAGLLSGSLLVENIMNYPGIGQLIYSALMKQDQFVVL-GSVVFSCLLLVLGNLI 306
                   ********************************************************************************.**************** PP

  BPD_transp_1 172 adilqrlldprv 183
                   adil +++dpr+
    CCG92252.1 307 ADILLAWVDPRI 318
                   ***********8 PP

>> Trep_Strep  Hypothetical bacterial integral membrane protein (Trep_Strep)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3      0.11     1e+03      36      50 ..      10      24 ..       1      52 [. 0.65
   2 ?   -1.6   0.5      0.26   2.3e+03      72      72 ..     114     114 ..      83     158 .. 0.59
   3 ?   14.8   0.9   2.4e-06     0.022      18      96 ..     234     312 ..     231     317 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.11
  Trep_Strep 36 paivallagivymll 50
                 a+++ll+g+ +m++
  CCG92252.1 10 LALIPLLLGVTFMVF 24
                344444444444443 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.26
  Trep_Strep  72 l 72 
                 +
  CCG92252.1 114 A 114
                 2 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 2.4e-06
  Trep_Strep  18 vfvvgmlglispvlmlllpaivallagivymllvakvpkfgailimglllgllllltGhgwlvlllaiiggliaeliak 96 
                 +f   +  +i+p++  +  +i++ll+g   +  +++ p  g ++ ++l+    +++ G  ++++ll ++g lia+++++
  CCG92252.1 234 MFRHVLRNAINPLISTFGYVIAGLLSGSLLVENIMNYPGIGQLIYSALMKQDQFVVLGSVVFSCLLLVLGNLIADILLA 312
                 45555566789****************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.53
# Mc/sec: 1841.52
//
Query:       CCG92253.1  [L=355]
Description: ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-29  101.8  17.0    3.7e-29  101.8  17.0    1.5  2  BPD_transp_1  Binding-protein-dependent transport system inne
      2e-08   34.1   0.2      2e-08   34.1   0.2    2.8  3  OppC_N        N-terminal TM domain of oligopeptide transport 
  ------ inclusion threshold ------
       0.15   12.4   1.3       0.56   10.5   0.1    2.4  3  DUF5122       Domain of unknown function (DUF5122) beta-prope


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.5       1.5   9.2e+03     166     172 ..      24      30 ..      15      39 .. 0.40
   2 !  101.8  17.0   6.2e-33   3.7e-29       1     184 [.     157     348 ..     157     349 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.5
  BPD_transp_1 166 lllnlva 172
                   ll++ ++
    CCG92253.1  24 LLFLYLI 30 
                   1111111 PP

  == domain 2  score: 101.8 bits;  conditional E-value: 6.2e-33
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g+l+G l++ ++++++d+++++l+++l+++P + l++ l  +f v +s+++ ++l viil+++++ +++r+ir  +l+ +++ +v aa +lG s  +
    CCG92253.1 157 GLLIGGLSG-YYGGWFDNVVMRLTEFLMAVPALYLLLALRGIFgVKFSSAQVYFLIVIILSFIGWSGFARVIRGLVLSLRSQTFVDAAIVLGQSSVK 252
                   789******.******************************9999999************************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis............nggvlalviavlllnlvadilqrlldp 181
                   i+ k++lPn++++++ +++l+++g + g ++l+flg    lg +  +a++g ++++++             ++ +a++i v+++n + d+l +l+dp
    CCG92253.1 253 ILLKHLLPNLASYLLVSAALSIPGYILGEAALSFLG----LGIQEPSASWGLMLAQAQdmkvfmlnfwwlLTPGIAILITVVAFNMLGDVLRDLVDP 345
                   ************************************....********************************************************* PP

  BPD_transp_1 182 rvr 184
                   ++r
    CCG92253.1 346 KFR 348
                   *98 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.2   3.3e-12     2e-08       8      51 .]       9      54 ..       5      54 .. 0.86
   2 ?   -2.3   0.7      0.78   4.6e+03      23      31 ..     210     217 ..     205     227 .. 0.54
   3 ?   -1.7   0.1      0.51     3e+03      19      34 ..     322     337 ..     322     345 .. 0.68

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 3.3e-12
      OppC_N  8 rrFkrNklAvvglvilllllliaifaPliaPydp..qdliqnllpP 51
                + ++rN+  + +  ill+l+liai+aP++aPy p  qdl   + pP
  CCG92253.1  9 KELLRNPFGLSACLILLFLYLIAILAPFLAPYEPsdQDLKKTYHPP 54
                6799****************************99766665447777 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.78
      OppC_N  23 lllllliai 31 
                 l+++ ++++
  CCG92253.1 210 LIVI-ILSF 217
                 2222.2233 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.51
      OppC_N  19 glvilllllliaifaP 34 
                 g +il++++++  +++
  CCG92253.1 322 GIAILITVVAFNMLGD 337
                 5677777777765555 PP

>> DUF5122  Domain of unknown function (DUF5122) beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.28   1.7e+03      20      27 ..      63      70 ..      60      73 .. 0.82
   2 ?   -3.6   0.0       2.4   1.4e+04       5      13 ..      90      98 ..      90      99 .. 0.86
   3 ?   10.5   0.1   9.5e-05      0.56       6      27 ..     158     179 ..     157     180 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.28
     DUF5122 20 dfalvRLn 27
                +f ++R+ 
  CCG92253.1 63 RFVVARYK 70
                89****97 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.4
     DUF5122  5 KIlVaGsft 13
                K +V G+ +
  CCG92253.1 90 KWFVHGYAY 98
                78999*998 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 9.5e-05
     DUF5122   6 IlVaGsftsyngssdfalvRLn 27 
                 +l++G +++y+g+ d+ ++RL+
  CCG92253.1 158 LLIGGLSGYYGGWFDNVVMRLT 179
                 699*****99***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2463.17
//
Query:       CCG92256.1  [L=304]
Description: SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-21   76.6   0.0    2.2e-21   76.3   0.0    1.2  1  Methyltrans_SAM  S-adenosylmethionine-dependent methyltransfe
     0.0028   17.3   0.0      0.005   16.5   0.0    1.5  1  Cons_hypoth95    Conserved hypothetical protein 95


Domain annotation for each model (and alignments):
>> Methyltrans_SAM  S-adenosylmethionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   2.5e-25   2.2e-21      54     230 ..      55     243 ..      26     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 2.5e-25
  Methyltrans_SAM  54 lwaakqg...rslvlqhryadgaa.se...vlvgeld..espvvvesglkyqldigrnqnfglfldmrlgrdwvqenakdknvlnlfaytcgfs 138
                       w+ + g   r++ l++r++++++ se    l+ge +   + +  e+gl y + +      glf+d r+ r +++++  + ++lnlfa++c f 
       CCG92256.1  55 CWSRSHGlspRRVFLKKRFKKECPaSEgllQLYGEETlpLQTICHENGLSYSIRFHGGSSPGLFIDQRQNRLFLRKRKIG-KLLNLFAFSCSFG 147
                      566666644477999999999987245333356764411456789*****************************988665.69**********9 PP

  Methyltrans_SAM 139 v.aaiaggaskvvnvdmargslnkgrdnhrlnghdlrrvsflgydifkswgkikks.gpydlviidppsfqkg....sfaltkdykkilrrlpe 226
                      + aa+agg  +  nvd++   l+ g++n+rlng d +  +fl  d   s   ++k+  ++d +iidpp+f  g     f++ +d+  +l +  +
       CCG92256.1 148 LcAAVAGG--QSWNVDLSAKFLEWGKENYRLNGVDPTGHTFLAIDARESLKLLRKKhLRFDHIIIDPPTFSCGrhgkHFSFPRDFEAMLDQALD 239
                      63788998..668*************************************999865169***********987333448889999999888777 PP

  Methyltrans_SAM 227 llve 230
                      l +e
       CCG92256.1 240 LCSE 243
                      7665 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.6e-07     0.005      43     122 ..     134     213 ..     124     262 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.6e-07
                    -EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--T.TTEEEEES-HHHHCTS--SS-EEEEEEE--S CS
  Cons_hypoth95  43 arvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelklee.etaelkedaleallklakkkeefdivflDPP 122
                     ++L+lfa s++ gl A+  g  ++  v+ +++ ++  ken +  +++   ++ l  da e+l+ l kk+ +fd + +DPP
     CCG92256.1 134 GKLLNLFAFSCSFGLCAAVAG-GQSWNVDLSAKFLEWGKENYRLNGVDPtGHTFLAIDARESLKLLRKKHLRFDHIIIDPP 213
                    468*************99999.78899****************9998876677777888888988999999********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2171.59
//
Query:       CCG92257.1  [L=167]
Description: Methylated DNA-protein cysteine methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-27   95.1   0.0    2.6e-27   94.7   0.0    1.2  1  DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA b


Domain annotation for each model (and alignments):
>> DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   1.5e-31   2.6e-27       1      80 [.      82     162 ..      82     163 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 1.5e-31
                    HHHHHHHHHHTTS-TT-BEEHHHHHHHTT.TSCHHHHHHHHHTSSBTTTSGGGGEEBTTSBCCTT.TTCHHHHHHHHHHTT CS
  DNA_binding_1   1 afqqrVwellrqIpyGkvttYgeiAkllgkpkaaraVgqalaanplailvPcHRVvgadgklggy.agglerkralLeaEg 80 
                    +f++ V+e +++Ip+G+v tY+++A+++g+p a+raVg+ala+npl++l+PcHRV++++g++g+y  gg + k++lL+ Eg
     CCG92257.1  82 PFYKMVLERVKTIPKGTVKTYSQLAEEIGHPLAVRAVGSALAKNPLPLLIPCHRVIRKNGQIGHYsLGGKSMKEKLLKLEG 162
                    6999*************************************************************77899**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1142.83
//
Query:       CCG92258.1  [L=625]
Description: ABC-type dipeptide transport system, periplasmic component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-87  292.7   0.7    4.8e-87  292.4   0.7    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.4   0.7   2.7e-91   4.8e-87       2     369 ..     132     531 ..     131     538 .. 0.93

  Alignments for each domain:
  == domain 1  score: 292.4 bits;  conditional E-value: 2.7e-91
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTTTTTHCHHHHHHH CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnalfltllaavpasi 100
                 v+p+LA+  wev +D+kt++fkLRkg+ +sDG pltA+Dv+fsf  + dp  + ++a++l+++ ++ kve++dd+t+++ +++ +a+fl++++ +p  +
  CCG92258.1 132 VIPGLAKQ-WEVAPDNKTFRFKLRKGLSWSDGVPLTADDVIFSFACIYDPRFPNRNAYDLSVNGKPFKVEKIDDQTIQIQTPEIFAPFLRYMSGFPLMP 229
                 79******.7***************************************************************************************** PP

                 GC............CHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTST.....TTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTT CS
   SBP_bac_5 101 ak............kaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYw.....gggkpkldriefkvipdsdaraaalqsGeiddvaepp 182
                  +            ++++ ++   k+ ++  v +GP+ + +++pg++ivle+np Yw     + ++p++d++++k+++d++a + a+ sG+  d+++++
  CCG92258.1 230 KHilepyfkdgslqNQWNIST--AKKDPKSIVASGPFLILSYNPGERIVLEANPRYWkkadgDIRLPYIDYLIVKFVKDANASLIAFASGQT-DIEGIS 325
                 *********998865553333..4677777788************************9998555999*************************.****** PP

                 CCTHCHHHHHTTEEE...EEEEEEEEEEEEEETTT...............STGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSS.STTTSTTCCSC CS
   SBP_bac_5 183 psdieqlkeakglkv...lyespgggvtylafNtk...............kppfddkrvRqAlsyAiDreeivkavlegyatpansl.lppsspgadee 262
                 p++++ +++ +++++     ++p++ + +l+fN++                ++f++  +RqA+syAiDre i++ vl g +tp  ++ +p ++++++++
  CCG92258.1 326 PDNVAWVQKGENIYHytiYDRGPSTASSFLWFNQNpgknknndpyvlpykLKWFQNRLFRQAISYAIDREGIINGVLFGRGTPLWGPeTPANVKWYNPN 424
                 *****************999****************************99779********************************************** PP

                 HCCCSHHSHHHHHHHHHHHTT-BCSSTSCEETC...EEEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECT CS
   SBP_bac_5 263 ykpaykaydpekAkklLkeaGykdgdggglrek...klkltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgad 358
                  k++  +y+p  A +lL++aG+  +  g l ++   + ++tll+++++p ++a+a++++++lk+iGi+v ++ +d+ +  ++ +++ ++ + llg +++
  CCG92258.1 425 VKKY--PYNPSLALQLLEQAGFHRDATGRLFDQdnhPVSFTLLTNQENPIRTAMATIFKENLKQIGIEVLLQFIDFGTLVTKISDSYEYEACLLGLTGG 521
                 9998..78**************988765554448****************************************997888888***********99988 PP

                 TSTTHHHHHHH CS
   SBP_bac_5 359 ypdpdnflnpf 369
                  +dp + ++ f
  CCG92258.1 522 -GDPADGMSVF 531
                 .5555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4642.24
//
Query:       CCG92259.1  [L=434]
Description: UDP-3-O-acyl-N-acetylglucosamine deacetylase and (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-89  300.4   0.0    1.5e-89  300.0   0.0    1.2  1  LpxC             UDP-3-O-acyl N-acetylglycosamine deacetylase
    5.5e-36  123.2   0.2    2.4e-35  121.2   0.0    2.0  2  FabA             FabA-like domain
    4.4e-05   23.8   0.0    0.00016   22.0   0.0    2.0  2  4HBT             Thioesterase superfamily
     0.0034   17.0   0.0     0.0062   16.1   0.0    1.4  1  MaoC_dehydratas  MaoC like domain
  ------ inclusion threshold ------
      0.021   15.3   0.0      0.082   13.4   0.0    2.0  1  4HBT_2           Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> LpxC  UDP-3-O-acyl N-acetylglycosamine deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.0   0.0   4.3e-93   1.5e-89       1     269 [.       2     271 ..       2     272 .. 0.98

  Alignments for each domain:
  == domain 1  score: 300.0 bits;  conditional E-value: 4.3e-93
                 EEEESS-EEEEEE-TTT-SEEEEEEEE--TT-EEEEEETTSS.ETEEESSGGGEEEESSSEEEEETTEEEB--HHHHHHHHHTT--SEEEEESSSB--- CS
        LpxC   1 qrTlkksvslsGvGLhsGekvevtlkPaeantGivfrrtdlp.ekeipasienvsdtklsttlgkkgvkvstvEHllaAlaalgidnalievdgeEvPi 98 
                 qrT++++vs++G +Lh+G++v++ +kPaea++G+vf+r+dlp e ++++s++nv++t+++tt+g+ +vkv+tvEH+laAl+++g+dnalie++++E Pi
  CCG92259.1   2 QRTIREPVSVEGLSLHTGNPVRIVIKPAEADSGYVFKRVDLPdEPTVQVSVDNVRQTERATTIGEGNVKVHTVEHVLAALSGCGVDNALIELNANEPPI 100
                 99****************************************55566*****************99********************************* PP

                 TTSSSHHHHHHHHHHTEEEEEEE--EEEE-S-EEEEETT.EEEEEEE-SSEEEEEEEEESSTTCCCCEEEEETTCCHHHHHTTT--EEEEHHHHHHHHH CS
        LpxC  99 lDGSaaefveaieeagikeqeaerkvlrvkkpveveegd.kfvallPsdelklsveidfehpaigeqslslelseesfakeiapARTFgflkevealrk 196
                  DGS +  v++i ++g++eq+++ +++++++pv+ve +d +++a+ P++++++s++    h+ + +q +s++++ +sf++eiapARTF+f++e+  l +
  CCG92259.1 101 GDGSGMFLVNEILKVGTVEQDKAVSFFELREPVWVEGEDgAYIAAWPDQNFSISCTHVS-HTGLFTQYFSWKYDIKSFVTEIAPARTFVFYEELVPLIE 198
                 ***********************************98777***************9877.99************************************* PP

                 TTSSTT-STTTSEEEESSSBSSTT--SSTTHHHHHHHHHHHHHHGGGSSEEEEEEEEES--HHHHHHHHHHHH CS
        LpxC 197 aglakGgsldnavvideekvlneeglrfedEfvrHKiLDliGDLallgapllghvvaykagHalnnkllrall 269
                 +gl+kGgsldna+vi+ e v+++++lrfe+EfvrHKi+D+iGD+al+ ++l+++vva +++H ln+k++r++ 
  CCG92259.1 199 KGLIKGGSLDNAIVIRGEAVYSQQPLRFENEFVRHKIFDMIGDFALFPKRLKARVVAARPSHFLNVKFIREIQ 271
                 **********************************************************************996 PP

>> FabA  FabA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.28     1e+03     105     130 ..      47      72 ..      23      79 .. 0.75
   2 !  121.2   0.0   6.6e-39   2.4e-35       1     137 [.     303     425 ..     303     426 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.28
                 EEEEEEEEEEECCTCEEEEEEEEEET CS
        FabA 105 vleveikkvseekrviiiadaellvd 130
                 +++v++ +v++ +r ++i +++++v 
  CCG92259.1  47 TVQVSVDNVRQTERATTIGEGNVKVH 72 
                 45666666668888888888888875 PP

  == domain 2  score: 121.2 bits;  conditional E-value: 6.6e-39
                 ---TT.T---SEEEEEESTCTCTSS.EEEEEEE--TTSHHHHHSSTTS----HHHHHHHHHHHHHHHHHHCC---SCCEEE-EEEEEEECEEEE-S--- CS
        FabA   1 lpark.lllldrvleieeeggkfgkGlivaekdvtpnewfFqgHFpgdPvmPGvLgleamaQlvgfyllksggdegkgrarklvlfagvdevkfrgqvt 98 
                 lp+r+ +l+ldrvl ++ ++ k     ++++k+vt+ne +FqgHFpg+P+mPGvL +eamaQl++++ll++ g  +     kl +f++ d+vkfr++v+
  CCG92259.1 303 LPHRYpFLMLDRVLGFQ-DDVK-----AIGQKAVTMNEAYFQGHFPGHPIMPGVLQIEAMAQLASILLLRKAG--NA---GKLGYFMSADKVKFRKPVM 390
                 8****************.6666.....7*****************************************9866..33...35689************** PP

                 TT-.EEEEEEEEEEEEECCTCEEEEEEEEEETTEEEEEE CS
        FabA  99 Pgdkklvleveikkvseekrviiiadaellvdgklvyea 137
                 Pgd +l++eve++k   ++ +i++a ++ +v+ ++v+e 
  CCG92259.1 391 PGD-TLIIEVEMTK---ARGKIGKAFGKCYVNKETVCEG 425
                 ***.**********...*******************986 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.8   6.4e+03      44      61 ..      40      57 ..      37      58 .. 0.81
   2 !   22.0   0.0   4.4e-08   0.00016      12      65 ..     356     410 ..     352     424 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.8
                BBTTCEEEEEEEEEEEES CS
        4HBT 44 vrlgdeltvearvlrlgr 61
                v l+de tv+++v ++  
  CCG92259.1 40 VDLPDEPTVQVSVDNVRQ 57
                6788999******99875 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 4.4e-08
                 HHHHHHHHHHHHTTST.TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEE CS
        4HBT  12 llDeaagaalrslggr.gilvvvvelsidflrpvrlgdeltvearvlrlgrtsav 65 
                 +++ a  ++lr+ g + + +++ ++++++f++pv +gd+l +e++++++ +++ +
  CCG92259.1 356 MAQLASILLLRKAGNAgKLGYFMSADKVKFRKPVMPGDTLIIEVEMTKARGKIGK 410
                 666777777777777799*******************************998766 PP

>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.7e-06    0.0062      73     105 ..     371     405 ..     338     422 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.7e-06
                      T..EGGGEEEEEEEE-S--BTTCEEEEEEEEEEEE CS
  MaoC_dehydratas  73 n..vvarvgeikvrFtkpVlpgdtlkvelevvgkr 105
                            ++ ++kv+F kpV pgdtl  e+e +  r
       CCG92259.1 371 AgkLGYFMSADKVKFRKPVMPGDTLIIEVEMTKAR 405
                      3456778899***************9999988744 PP

>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.3e-05     0.082      42      76 ..     359     406 ..     257     433 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.3e-05
      4HBT_2  42 r.............giglilssahvryrrplkfpdrltvefrvidida 76 
                 +             + g+++s+++v++r+p+ ++d l +e+ +++   
  CCG92259.1 359 LasilllrkagnagKLGYFMSADKVKFRKPVMPGDTLIIEVEMTKARG 406
                 0433334444444466********************999988877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3162.44
//
Query:       CCG92260.1  [L=258]
Description: UDP-acetylglucosamine acyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-26   89.1  14.1    2.4e-12   46.1   1.6    5.5  6  Hexapep          Bacterial transferase hexapeptide (six repea
    1.6e-25   89.3   0.0    2.5e-25   88.8   0.0    1.3  1  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D
    1.4e-06   28.0  10.0    7.3e-05   22.4   2.1    4.0  4  Hexapep_2        Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   1.2e-07   0.00073       9      35 ..       4      30 ..       3      32 .. 0.87
   2 !   46.1   1.6   3.9e-16   2.4e-12       2      36 .]      15      49 ..      14      49 .. 0.96
   3 ?    1.2   0.0     0.058   3.5e+02      10      23 ..      53      66 ..      50      70 .. 0.45
   4 !    3.8   0.0    0.0085        51       3      35 ..      64      96 ..      62      97 .. 0.69
   5 !   28.0   0.0     2e-10   1.2e-06       2      36 .]     105     139 ..     104     139 .. 0.95
   6 !   14.7   0.8   3.2e-06     0.019       1      34 [.     140     173 ..     140     175 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.2e-07
                EE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  9 lIgpfaviggnVkIGdnvkIgagvvig 35
                 I+p av+ + ++IG +v Ig++++ig
  CCG92260.1  4 SIHPTAVVSEKAQIGAGVEIGPYAYIG 30
                589999999999999999999999997 PP

  == domain 2  score: 46.1 bits;  conditional E-value: 3.9e-16
                EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep  2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36
                ++IG +v Igp+a+ig++VkIGdn++I++++v++g
  CCG92260.1 15 AQIGAGVEIGPYAYIGEGVKIGDNCIIHPHAVLKG 49
                78******************************986 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.058
                E-TTEEEETTEEE- CS
     Hexapep 10 IgpfaviggnVkIG 23
                Igp   +++ ++IG
  CCG92260.1 53 IGPENEFYSFCVIG 66
                33333333334444 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.0085
                EEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  3 vIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35
                vIG++++  ++       kIG n +  ++++++
  CCG92260.1 64 VIGEKSQDLKYQGEPTYLKIGTNNVFREFSTVH 96
                555555555555555556899999999999987 PP

  == domain 5  score: 28.0 bits;  conditional E-value: 2e-10
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 t IGs+++  ++++i++++ IGd ++  ++++++g
  CCG92260.1 105 TEIGSHNHFLAYTHIAHDCRIGDWCVFSNNATLAG 139
                 78******************************976 PP

  == domain 6  score: 14.7 bits;  conditional E-value: 3.2e-06
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34 
                 ++v++++v+Ig  + ++  + IG+ + Ig ++ +
  CCG92260.1 140 HVVVEDHVTIGGLSAVHQFCRIGRFSMIGGCTKV 173
                 689**************************99876 PP

>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   0.0   4.1e-29   2.5e-25       1      82 []     176     257 ..     176     257 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.8 bits;  conditional E-value: 4.1e-29
                      BB-TTEEEETTTTEEEEE-HHHHHHTT--HHHHHHHHHHHHHHHSSSS-HHHHHHHHHHHTTTSCCHHHHHHHHHH-SS-B- CS
  Acetyltransf_11   1 DVpPfvlvagnparlrglNlvgLkRrgfseeeikalkkayrllyrsglsleealeeleeeaeespevqelldFieaskRGii 82 
                      DV+Pf lv+gnpa+lr+lNlvgLkR++fsee+ik+lk a +ll   gl++++aleele+  e+++e++++++Fi++s+RG+i
       CCG92260.1 176 DVIPFSLVDGNPAKLRSLNLVGLKRNHFSEEQIKSLKFALKLLLDGGLNISQALEELEKVTEKTQELMAIIRFIKDSERGVI 257
                      9*********************************************************99********************86 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   2.1   1.2e-08   7.3e-05       4      26 ..      17      41 ..      14      47 .. 0.91
   2 !   17.5   1.2   4.4e-07    0.0026       2      21 ..      33      54 ..      32      54 .. 0.89
   3 ?    2.7   0.2     0.018     1e+02       3      27 ..     124     150 ..     123     151 .. 0.75
   4 ?   -0.0   0.2      0.13   7.8e+02       8      17 ..     159     168 ..     159     178 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.2e-08
                E-TT-EE-TT-EE..SEEE-TT-EE CS
   Hexapep_2  4 IGdnCliGanagi..GvslGdncvv 26
                IG+ + iG+ a+i  Gv++Gdnc++
  CCG92260.1 17 IGAGVEIGPYAYIgeGVKIGDNCII 41
                9***********9889********9 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 4.4e-07
                EEE-TT-EE-TT-EE.S.EEE- CS
   Hexapep_2  2 viIGdnCliGanagi.G.vslG 21
                v+IGdnC+i++ a+  G +++G
  CCG92260.1 33 VKIGDNCIIHPHAVLkGeIEIG 54
                9*************88878887 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.018
                 EE-TT-EE-TT-EE.S.EEE-TT-EE- CS
   Hexapep_2   3 iIGdnCliGanagi.G.vslGdncvvg 27 
                 +IGd C++  na+  G v ++d +++g
  CCG92260.1 124 RIGDWCVFSNNATLaGhVVVEDHVTIG 150
                 588888888888844888888888776 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.13
                 -EE-TT-EES CS
   Hexapep_2   8 CliGanagiG 17 
                 C iG ++ iG
  CCG92260.1 159 CRIGRFSMIG 168
                 9999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1893.73
//
Query:       CCG92261.1  [L=305]
Description: putative enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-39  135.9   0.0      2e-39  135.6   0.0    1.1  1  DeoC      DeoC/LacD family aldolase


Domain annotation for each model (and alignments):
>> DeoC  DeoC/LacD family aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.0   1.1e-43     2e-39       2     235 .]      36     273 ..      35     273 .. 0.93

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 1.1e-43
                 EEEEECCSHHHHHHHHCTSS..HHHHHHHHHHHHHHGGGSSEEEEETTTHHHHHHCSCTTSEEEEETECSSCCTTSTTEEEE.....TTCHHHHHHHTT CS
        DeoC   2 vilavDqrvankddtasaqn..eqledlkalvkealtpgasavlldpgviasaskeyakdiallvkldkgtyllkskqrdvd.....evasveeakalG 93 
                 +++a Dq+v++ +d++  +   +  +d+++l+k a ++ ++a+++++g+ia++ ++y  ++ ++vkl+++t+l+k++qrd++      + ++  +++  
  CCG92261.1  36 MLMAGDQKVEHLNDDFYGPGisPEDADPEHLFKIASKARIGAFATQLGLIARYGMDYP-NVRYIVKLNSKTHLVKTAQRDPLsllwlSFEQLDYFLETK 133
                 7899*************999**************************************.9************************999999999****** PP

                 -SEEEEEEEEHTTTTCHHHHHHHHHHHHHHHHHHHTEEEEEEEEE-CTTBSSTTCHHHHHHHHHHHHTCCT-SEEEE--SSCC.B.HHHHHHHHHHHHH CS
        DeoC  94 AdavkvvvyyradgseeeqqklaeikrvkeacheeglplilelylrdeaikdekvdpdlvaeAarvsaelGaDiiKvevpkevvnateedaevfkdvik 192
                  + +  v y+++ gse e+q+l e +r   ++h+ gl  i++ y+r++a+++e  dp+lva Aa ++a+lGaD++Kv+ p  +v++++    + k++++
  CCG92261.1 134 PVPIVGVGYTIYPGSEFEAQMLTEAARLVFEAHQRGLIAIIWSYPRGKAVSNET-DPHLVAGAAGLGACLGADFVKVNPP--SVKEGDANL-ALKEAVA 228
                 ******************************************************.*************************..555555444.5666777 PP

                 CHSSTEEEEETTS..SHHHHHHHHHHHHHHHTHCEEEESHHHHTT CS
        DeoC 193 aapvpgvvlsGGv..seedfletvedAvkeagasGvlsGRaifqk 235
                 aa    ++++GG     +dfl+ ++ +++  g  G+++GR+i+qk
  CCG92261.1 229 AAGRTRLICAGGKetAVKDFLSRLHAQIHIGGTYGNATGRNIHQK 273
                 676666******987789**********66677**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1998.36
//
Query:       CCG92262.1  [L=552]
Description: Na+/proline symporter [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-29  101.5  23.3    6.4e-29  101.0  23.3    1.1  1  SSF       Sodium:solute symporter family


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0  23.3   3.6e-33   6.4e-29       3     390 ..      40     455 ..      38     467 .. 0.77

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 3.6e-33
         SSF   3 lagrsltgfvlglslaasnisaasfvGlaGava.asGlavvllelgalllvlllllllaerlrnagalTlpdylskRfkgkrilvylsalsll...lvi 97 
                 l+gr++ ++ +  s+ a + sa+ f+G ++ ++ +  +  + l+lg +l+ +++ +++++ + ++ +  + ++l+ Rf+    +++ sa+ ll   l++
  CCG92262.1  40 LGGRKMPWWSILGSIIAAETSAGAFLGTPAEGYvLQNYTYLQLALGTILARVIIAFFFIKPFFQLKVHSIYQFLELRFGPLT-QKIASAIFLLtrvLAM 137
                 89******************************9457899****************************************888.7777776665221444 PP

         SSF  98 tlklsvd....lvggaklielalG....ln.yetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevG...gleslveklkeaap 184
                  ++l v     +vg  +l++++l+    ++ y  +++l+   ta+Yt +GG+ Av++td +qa +ml+g +i   i + ++     + +l++kl     
  CCG92262.1 138 GTRLYVAaiilVVGTQILFQKTLSplqeVSlYFFSIVLISTFTAIYTTLGGIKAVIWTDLLQAAVMLLGGIIAFWILVEKLSfvyPFPTLFHKLIDRPW 236
                 44333322222678889*****98544433255689999999*******************************99999999876677788888776555 PP

         SSF 185 kvvdllt.pdslkllrdpltalslwlglvlGvagl........philvRflaakdakailkgvlkltivlilvligmisiilfaiklagavpkavgtev 274
                  ++ ++  ++ l+ l+  l+++      ++G +          + i++R+l+akd +  + +++ +    i + ++ +si+l    +   +     +  
  CCG92262.1 237 VTMGIIPsKGLLENLLVILAIDYTIWSALIGSTFTtmathgtdQDIVQRLLTAKDYQRSRLSLILSGFADIPIGFLFLSIGLLLSFFYSTHA--DSALP 333
                 445555535556778888888766555666666666889***************87776666665554444444555556665555544433..34455 PP

         SSF 275 gvsniaypeLvvkllpnllaGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvg........vsriivlvvislaillavqeeqkg 365
                 +++n ++   ++  lp++++G+++a+++A+   +l++ l++ +++f +D     +    a ek+ v         ++++++l+ i  ai ++  +e + 
  CCG92262.1 334 TNPNEIFSYFIITQLPSGIRGIVIAAIFATATGSLSAALNALATSFCQDWMHPPMNAI-ADEKKKVAslraativFAFLTSLIGIGTAIYVVYSPEAR- 430
                 789**********************************************887665555.455544440111111134445566666677777788887. PP

         SSF 366 vlklvelafaglasavlavillalf 390
                 +l ++  +++    + l v+ll+l 
  CCG92262.1 431 ILPIILGIIGFTYGPLLGVFLLGLL 455
                 9999999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3989.90
//
Query:       CCG92263.1  [L=642]
Description: Phosphomannomutase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-31  107.8   0.0    4.4e-30  104.2   0.0    2.6  2  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    7.8e-23   81.1   0.0      2e-22   79.7   0.0    1.7  1  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
    2.3e-16   60.0   0.0      1e-15   57.9   0.0    2.1  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
      3e-05   24.1   0.0    9.1e-05   22.6   0.0    1.8  1  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.0   9.8e-34   4.4e-30      13     136 ..      98     224 ..      62     226 .. 0.93
   2 ?   -2.7   0.0      0.97   4.3e+03      37      48 ..     329     341 ..     320     342 .. 0.70

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 9.8e-34
                 CCHCTBSCCHHHHHHHHHHHHCHHC..STS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE.EB-HHHHHHHHHHCCECEEEEE--TTS-TTCCC CS
   PGM_PMM_I  13 vgegeltpelveklgqaiaeylkae..akkkkvvvGrDtRvssrelaealaaglaanGvevillg.llptPavsfairklkadagimitaSHnppeyng 108
                 vg++ +++ +v++++ ++a+ylk++  ++  k+v+++D+R++sr +ae +a+ l + G e++l++  ++tP +sf++r lka +gimitaSHnpp +ng
  CCG92263.1  98 VGVNCMNDRNVRSAALGLANYLKRNfpGEPLKIVISHDSRHFSRYFAELCARELQKVGGEAFLFEsQRSTPQLSFTVRWLKAHGGIMITASHNPPYDNG 196
                 444459********************9999********************************************************************* PP

                 EEEEETTTCE--CHHHHHHHHHHCCT-E CS
   PGM_PMM_I 109 iKvylsnGgpispeveekIeaiiekeee 136
                 +K y ++G+++ +++++++ +++ek+e+
  CCG92263.1 197 FKAYFRDGCQLIEPHASEVIKEVEKIES 224
                 ***********************99976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.97
                 C.STS-EEEEEE- CS
   PGM_PMM_I  37 e.akkkkvvvGrD 48 
                    +++ +v+G D
  CCG92263.1 329 AkVENSDIVIGTD 341
                 236899*****99 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   4.6e-26     2e-22       2      99 ..     247     350 ..     246     356 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 4.6e-26
                 HHHHHGGGTS-...HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-..EEEES-----TT-TT.SS----TT-TTTTHHHHGGGGG-SEEEEE-TTS- CS
  PGM_PMM_II   2 aYiealkekvd...seaikksglkvvidplhGaggeilkellkelgv..dvvelnaepdpdfpt.kapnpeekealkllielvkkegadlglafDgDaD 94 
                 aY+ea+++ +      a ++++lkvv++plhG+g ei+++l+ + g+   +v+ ++ pd++fpt k+pnpe+++al+l+++ +k e+ d+++ +D+D+D
  CCG92263.1 247 AYMEAVETVCLdpkAFASAREKLKVVYTPLHGTGIEIIPKLFDRHGIhySLVQSQSVPDGSFPTvKTPNPEDPAALSLAVQQAKVENSDIVIGTDPDGD 345
                 6888887776675433445559*************************999999********************************************** PP

                 BEEEE CS
  PGM_PMM_II  95 Rlgvv 99 
                 R+g++
  CCG92263.1 346 RMGAA 350
                 ***99 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   2.3e-19     1e-15       2     104 ..     363     503 ..     362     513 .. 0.80

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 2.3e-19
                  HHHHHHHHHHHHHCH.........CSTTTCEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHT...............T...........E CS
  PGM_PMM_III   2 gdqllallakyllee.........klkpgagvvktvmtslalervakklgiklvetkvGdkyvleemkee...............g...........a 64 
                  g+q++al+a y  ++         ++++ a+++k+++t+++++++a+++++++vet +G+ky+++++ +                +           +
   CCG92263.1 363 GNQIFALFAYYRTSKlfqlgiltpENAHRAVIIKSFVTTDLIKKIAEHFQVRCVETLTGFKYIGAKLLKYemqsglvdydshpfeErravqlqrgtyF 460
                  9***********8888888865544444478***********************************99996776666666655550566666777889 PP

                  CEEEETTCEEEETTTBSS--HHHHHHHHHHHHH...HHTS-HH CS
  PGM_PMM_III  65 vlGgEeSghiifldeattkDGilaallvleila...etgksls 104
                   +GgEeS++ +++d++++kD+  aal ++e++     + ++l 
   CCG92263.1 461 ICGGEESYGTSCGDYVRDKDANSAALELVEVAGwaaMQSMNLL 503
                  ******************************9864433344555 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0     2e-08   9.1e-05      24      54 ..     574     604 ..     559     624 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2e-08
                 HCCCCCCCCGCCEEEE.EEEETTCCEEEEEE CS
  PGM_PMM_IV  24 sikeglkilledGrrlavRpSGTepllrvyv 54 
                 +   +l +l+e+   l+vR+SGTep++++y+
  CCG92263.1 574 PKEIMLHFLFENNNKLVVRASGTEPKIKFYL 604
                 55667889999999999*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 4530.01
//
Query:       CCG92264.1  [L=54]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 406.23
//
Query:       CCG92265.1  [L=327]
Description: Exopolyphosphatase-related protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-11   45.3   0.0    1.8e-11   44.6   0.0    1.3  1  DHHA1     DHHA1 domain
    1.5e-09   38.0   0.0    3.1e-09   37.0   0.0    1.5  1  DHH       DHH family


Domain annotation for each model (and alignments):
>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0     2e-15   1.8e-11      46     134 ..     238     318 ..     211     325 .. 0.82

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 2e-15
                 ECHCCHHHHHHHHHHHHHHTHGBT.TCEEEEEEEECT.EEEEEEEESSHSS-HHHHHHHHHHHTTCCEEEETCEEEEEEEHCHHHHHHHHH CS
       DHHA1  46 evgeewdagalgiaadklksklkk.pvivfvakeegd.kvkvsarskkdgvdagelakeaaaklgggGGGHdlAaGagipaekleealeal 134
                 +++++ ++g  ++   +l+    k +v++f ++e  +  +++s+rs+k ++d++ +a++      +gGGGH  AaGa+i+  +le+a + +
  CCG92265.1 238 YLKTGSNRGEAENFLYYLLM--VKsVVVAFMLEELSPnLIRLSLRSSK-DFDVRRIASK------FGGGGHIRAAGARIK-LDLEQAKKTV 318
                 45577788999999999999..777*********999***********.**********......**************7.5557766665 PP

>> DHH  DHH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   3.5e-13   3.1e-09       2     100 ..      24     163 ..      23     165 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 3.5e-13
                 EEEE-ECSSSHHHHHHHHHHHH............................................CECS--TCGGCGCCHHCCCSEEEEEEE-S---S CS
                 xxxxxxxxxxxxxxxxxxxxxx............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         DHH   2 ilivghknpDtDsigSaialan............................................llvDhneksqavegeakeeaedviiiDHHrlge 56 
                 ++i+ h +pD+D+ gSai+l                                              ++vD+++ ++        +    +  DHH  ++
  CCG92265.1  24 FVILSHCRPDGDAYGSAIGLGLvlknlgkkvdayieegllehfaflpgasilkaptevapdpqtkiITVDCSNIKRPGLFFESWNRPVDLNFDHHIDNT 122
                 7899*****************9777777777777777777777777777777777777777777766*********99986666777889*******86 PP

                 S---SS--EEEE-SSS-HHHHHHHHHHHTT----HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         DHH  57 efetlapilflnepvgstaeivaelleekkeeiskeiaellllg 100
                 +f tl    +++++++s +e++++++e+ +  ++ke a   ++g
  CCG92265.1 123 RFATL---NVVEPQASSSCEVIFRCIEKLSLPCPKEAAANFYVG 163
                 66666...79*****************98888888888776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2318.54
//
Query:       CCG92266.1  [L=237]
Description: tRNA pseudouridine synthase B [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-55  185.6   0.0      8e-55  185.3   0.0    1.1  1  TruB_N    TruB family pseudouridylate synthase (N terminal do
    5.8e-12   45.6   0.0    1.1e-11   44.7   0.0    1.5  1  TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain


Domain annotation for each model (and alignments):
>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.3   0.0     9e-59     8e-55       1     149 []      25     173 ..      25     173 .. 0.99

  Alignments for each domain:
  == domain 1  score: 185.3 bits;  conditional E-value: 9e-59
                 HHHTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE----------- CS
      TruB_N   1 krllkakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieqvppmySAvk 99 
                 ++++++kkvGh+GtLDp+atG+Lv+++g+aTk+ + l+++dK+Ye ++rlg++t+t+D++g+i+ee+ v+ l+ e+l++v+++f G+++q+ppm+SA+k
  CCG92266.1  25 RKKFNIKKVGHCGTLDPMATGLLVLVLGKATKIQDLLMSEDKRYEGVLRLGQSTTTQDSDGKIVEEKPVPPLSLEELKQVFDRFVGDFYQIPPMISAIK 123
                 799***************************************************************99******************************* PP

                 ----------------------EEEEEEEEEEEEEEEEEEEEEESTTTTH CS
      TruB_N 100 vnGkrlyelaregeeverkkrkvtiyelelleveepevelevecskGtYi 149
                  +G +ly+lareg+everk+r v++y++++ ++e+p v++ev c kG+Y+
  CCG92266.1 124 SHGVPLYKLAREGKEVERKPRLVHVYSYQIKKWEPPFVDFEVFCGKGFYV 173
                 *************************************************8 PP

>> TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   1.3e-15   1.1e-11       1      57 [.     174     226 ..     174     231 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 1.3e-15
                 HHHHHHHHHHTTS-EEEEEEEEEEETTEGG-..B-HHHHHHHHHHHHT--HHHHHEE CS
    TruB_C_2   1 RtLcdDiGeaLgcgAhveeLRRtrvgpfdeedmvtledLedavllykedeeLdrlll 57 
                 Rt c DiG+aLgcg+h+  L Rt++g+f+ ++++ ++ L+++++     +eL +++l
  CCG92266.1 174 RTYCYDIGQALGCGGHLFSLVRTQSGNFKLAQALPFDVLKSMLS----PKELLNHVL 226
                 9**************************************99777....666444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1836.83
//
Query:       CCG92267.1  [L=329]
Description: FAD synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-39  134.2   0.0    4.8e-39  133.8   0.0    1.2  1  FAD_syn          FAD synthetase
    5.5e-33  113.6   0.0      2e-32  111.8   0.0    1.9  2  Flavokinase      Riboflavin kinase
    1.2e-05   25.5   0.0    0.00014   22.1   0.0    2.2  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> FAD_syn  FAD synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0     8e-43   4.8e-39       3     157 ..      36     188 ..      34     189 .. 0.96

  Alignments for each domain:
  == domain 1  score: 133.8 bits;  conditional E-value: 8e-43
     FAD_syn   3 eedegavvtlGnFDGvHlGHqallkkaveaakekglpsvvvtFephPrevlakekaparLttleeklelleelgvdavlvvdFtkefaelsaeeFiekl 101
                 e+++   +++G FDG+HlGHq++l++++++ ++++  s+v+tFephP  ++a+e+ p +L +l++k +l+e +g++++l+++F++++ el+ae+Fi +l
  CCG92267.1  36 ENKQIENIAIGVFDGIHLGHQKILRNLLSLGSKEN--SLVITFEPHPLAIIAPERVPPKLVSLQQKKTLFEIYGLKHILFIRFDQRLRELTAEAFIIEL 132
                 56667789***********************8887..99***********************************************************7 PP

     FAD_syn 102 lveklkvkavvvGfdfrfGkkregdvellkelgaklgfevevvpkveleeekisst 157
                  +   ++k vvvG+dfrfG + eg+v+ll+e g+ lgfe+ vv ++  +++ isst
  CCG92267.1 133 KKAFPRLKRVVVGEDFRFGWNAEGNVRLLREKGHLLGFETIVVTPLLFQGQSISST 188
                 777779*************************************************9 PP

>> Flavokinase  Riboflavin kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.5     3e+03       7      28 ..     154     175 ..     150     186 .. 0.81
   2 !  111.8   0.0   3.3e-36     2e-32       1     111 []     206     328 ..     206     328 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.5
                  EEEEEES-SSCHTTTT--EEEE CS
  Flavokinase   7 lsgkVvkGkkrGrelgfpTaNl 28 
                   +g+V   ++ G+ lgf T+ +
   CCG92267.1 154 AEGNVRLLREKGHLLGFETIVV 175
                  67888888999999***99865 PP

  == domain 2  score: 111.8 bits;  conditional E-value: 3.3e-36
                  HTS-EEEEEEEES-SSCHTTTT--EEEEE-.S-B-GTSEEEEEEEE.......EEEEEEEETTTSSE....EEEEETT--S--TTSEEEEEEEEEEEE CS
  Flavokinase   1 LgrpyslsgkVvkGkkrGrelgfpTaNlel.ekllpkkGVYavrvk.......gvaniGvrptfknk....vEvhildfsedlygkelrvellkflRp 86 
                  Lgr+y+++g V +G+++G+++gfpTaNle   +llp  GVY ++v        gvan+G rpt++++    +E h++df+++lyg++l++   +flR+
   CCG92267.1 206 LGRSYRIEGIVGTGQGVGKTIGFPTANLEHiVQLLPPPGVYGCQVVynkeifiGVANYGRRPTVQEEgrlnLELHLIDFEGNLYGQTLSLFNFHFLRE 303
                  89***************************878899*****************************99778889************************** PP

                  ----SSHHHHHHHHHHHHHHHHHHH CS
  Flavokinase  87 ekkFdsleaLkaqikkDvekarell 111
                  ek+F s+e+Lk+qi+kD+ek+++++
   CCG92267.1 304 EKRFLSVEELKQQIAKDIEKTKSFF 328
                  ********************99875 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.3e-08   0.00014       1     143 []      43     193 ..      43     193 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.3e-08
                      EEEE--TT--HHHHHHHHHHHHHSSES...EEEEEESSTHCSST-...SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHH.....HHHHHTTT. CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleed...livgvpsdeppkkkk...kplasaeeRlemlelakevdevisvdpweltr.....evlkklkp. 82 
                      +a G+FD iHlGH ++l+++++l++++   +i + p +      +   ++l+s++++    e +   + ++ +++++  r      ++ +lk  
       CCG92267.1  43 IAIGVFDGIHLGHQKILRNLLSLGSKEnslVITFEPHPLAIIAPErvpPKLVSLQQKKTLFEIY-GLKHILFIRFDQRLReltaeAFIIELKKa 135
                      689***********************99843333333322222223447899999998888888.44444555555555544557333333332 PP

                      ....TEEEEEEEHHHHHHHHCHHHHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHHHHHH CS
  CTP_transf_like  83 ....dklylvigadvledfsewkeleeilgnvklvvvsrpekqanvllkaekrtngiSstkirer 143
                          +   +v+g+d     + + +++ + ++ +l +++       v+++   + + iSstkir++
       CCG92267.1 136 fprlK--RVVVGEDFRFGWNAEGNVRLLREKGHLLGFETI-----VVTPLLFQGQSISSTKIRKA 193
                      22344..789999988886555599999999999999666.....88999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2450.16
//
Query:       CCG92268.1  [L=176]
Description: Predicted small integral membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-50  169.7   3.5    5.4e-50  169.5   3.5    1.0  1  DUF2165   Predicted small integral membrane protein (DUF2165)


Domain annotation for each model (and alignments):
>> DUF2165  Predicted small integral membrane protein (DUF2165)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.5   3.5     3e-54   5.4e-50       2     154 ..      17     169 ..      16     171 .. 0.99

  Alignments for each domain:
  == domain 1  score: 169.5 bits;  conditional E-value: 3e-54
     DUF2165   2 rlakallvlalalfalLvafnNvtdyesnfafvrhVlsMdttfpdsalewRAitspalhraayvlIialEalaalllllGavallralkasaaafnrak 100
                 r++k+l++l++++++lL+a+nN++dye+n+++ rhVl Mdt+ ++s+l++RA++sp l +++y  +i++E l++ lll+G++ ll++  +s  af++ak
  CCG92268.1  17 RISKILILLFFSFYFLLIALNNLLDYETNYTYLRHVLLMDTIPKASHLHYRAWNSPFLFSLVYNSLILWEGLCGTLLLIGTFFLLKNFFKSPIAFQKAK 115
                 99************************************************************************************************* PP

     DUF2165 101 alailgltlgvllwfvgflvvGGewFlmWqskewNGqeaafrffviillvlill 154
                 ++ i+gl lg+++w+ +f++ +GewF+mWqs+++NG+ +afr+ ++il++l++ 
  CCG92268.1 116 SVGIVGLSLGLIQWLYFFILGAGEWFQMWQSSNYNGLPQAFRMSILILIFLVYY 169
                 ****************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1218.98
//
Query:       CCG92269.1  [L=591]
Description: Outer membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-51  175.4  12.4    5.3e-28   98.1   8.8    2.8  2  OEP        Outer membrane efflux protein
  ------ inclusion threshold ------
      0.027   14.5   0.9      0.027   14.5   0.9    1.8  2  Cep57_CLD  Centrosome localisation domain of Cep57
       0.45   10.9   0.0       0.45   10.9   0.0    3.9  5  DUF2564    Protein of unknown function (DUF2564)


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   8.8   8.9e-32   5.3e-28       1     188 []     139     357 ..     139     357 .. 0.96
   2 !   77.5   0.1   1.8e-25   1.1e-21       4     173 ..     381     549 ..     378     564 .. 0.90

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 8.9e-32
         OEP   1 ldellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgtt...............................svg 68 
                 l++l a a + n+++k+a a++  a+a + aa ++f+P  +++ sy++   ++  +      +++                               +v 
  CCG92269.1 139 LNQLEAEAEAANQQIKMAMANVIEARAGVGAALSAFFPHTNFTPSYQRWKLKTHLPWLPFILPEPifstvpinglpagsiigtthyygfqptlnmwQVY 237
                 7899********************************************87777766666666666********************************** PP

         OEP  69 ltlsqplfdggkrrarvkaakaqleaaeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqara 167
                 l+ +++l  +gk r++++aaka+ +a++a+le ar+++ ++vaqay+ l+++  qle+ e++++ +e++l+++e ryk Gl+++ld+++a+ +l++ ++
  CCG92269.1 238 LNSNWELDIWGKLRRQLEAAKAEAQASQAELEGARLTIHADVAQAYYLLRYLDSQLEVMERMIRVYEDNLKRVEIRYKSGLSNELDLARAKTDLSRIKS 336
                 *************************************************************************************************** PP

         OEP 168 elaeaeqqlqlaraqLeyllg 188
                 ++++ e+ +++ ++ +++llg
  CCG92269.1 337 QYIALESHRAKVENSIARLLG 357
                 *****************9998 PP

  == domain 2  score: 77.5 bits;  conditional E-value: 1.8e-25
         OEP   4 llalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqleqa 102
                 l +  le++pd+++ae e +a++a + +a a+++P+++l++ +g+ + +    +  + +++  +g  + +p+f gg+  a++ +a+a +e+a a ++++
  CCG92269.1 381 LPSEILEQRPDIAQAEREMAATNAMIGVAYAAYFPSVNLNAYFGFFNTDFGQLFTWPSNSW-IYGPLIDLPIFEGGRLLANLMQARAAYEKAVASYRET 478
                 567889***************************************9999888777777666.8************************************ PP

         OEP 103 rqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeae 173
                 +++  +ev++a+ +++l++e+ ++ +e++++a+k+++la +r++ Gl+ +++v+++++  l+a ++ ++ +
  CCG92269.1 479 VLTAFEEVENALIGVRLLEEEQKVEDELVESARKQYDLAMDRFQRGLSHYIEVDTTESLWLNAILTDIALR 549
                 *******************************************************9998887766655555 PP

>> Cep57_CLD  Centrosome localisation domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.9   4.5e-06     0.027      42     146 ..     255     355 ..     245     362 .. 0.75
   2 ?   -3.7   0.1       1.7     1e+04     102     111 ..     494     503 ..     466     522 .. 0.50

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.5e-06
   Cep57_CLD  42 qeeseekekekseeskqnqelesqLaaaesrcslLEkqLeymrkmvesaekerkavlekqaslekekkqesselqaklekLekLEkeylrLtatqklae 140
                 ++ + e++++++e + ++  +++++a a    + L+ qLe m +m++  e + k v  +     k+  +++ +l +   +L+++ ++y+ L++ +++ e
  CCG92269.1 255 EAAKAEAQASQAELEGARLTIHADVAQAYYLLRYLDSQLEVMERMIRVYEDNLKRVEIR----YKSGLSNELDLARAKTDLSRIKSQYIALESHRAKVE 349
                 4444455555555666667777778888888999*************998865444333....33334555788888899******************* PP

   Cep57_CLD 141 kkikeL 146
                 + i++L
  CCG92269.1 350 NSIARL 355
                 *99887 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.7
   Cep57_CLD 102 aslekekkqe 111
                   le+e+k e
  CCG92269.1 494 RLLEEEQKVE 503
                 3333333222 PP

>> DUF2564  Protein of unknown function (DUF2564)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.6e-05      0.45      14      44 ..      82     112 ..      79     129 .. 0.88
   2 ?   -2.4   0.3       1.1   6.4e+03      15      36 ..     149     158 ..     138     171 .. 0.52
   3 ?   -2.2   0.2      0.95   5.7e+03      30      46 ..     253     269 ..     250     293 .. 0.61
   4 ?   -1.2   0.1      0.46   2.7e+03      31      57 ..     324     350 ..     319     354 .. 0.80
   5 ?   -0.9   0.0      0.38   2.3e+03      29      51 ..     505     527 ..     499     534 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.6e-05
     DUF2564  14 tAqkmvGqATmsmdpdqlesAtqAiedAreq 44 
                 +A k+ Gq     dp+ ++s ++Aie+A+++
  CCG92269.1  82 SASKTAGQSKNPIDPQSVDSLKKAIEEAKKN 112
                 89***************************75 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
     DUF2564  15 AqkmvGqATmsmdpdqlesAtq 36 
                 A            ++q++ A +
  CCG92269.1 149 A------------NQQIKMAMA 158
                 2............333333333 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.95
     DUF2564  30 qlesAtqAiedAreqls 46 
                 qle+A++  ++ +++l+
  CCG92269.1 253 QLEAAKAEAQASQAELE 269
                 44444444444444444 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.46
     DUF2564  31 lesAtqAiedAreqlssaeehatgvde 57 
                 l  A++ +   ++q+   e+h ++v++
  CCG92269.1 324 LARAKTDLSRIKSQYIALESHRAKVEN 350
                 677888889999999999999988876 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.38
     DUF2564  29 dqlesAtqAiedAreqlssaeeh 51 
                 +++esA +  + A + +++  +h
  CCG92269.1 505 ELVESARKQYDLAMDRFQRGLSH 527
                 45555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 3701.26
//
Query:       CCG92270.1  [L=504]
Description: Inner membrane component of tripartite multidrug resistance system [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-26   90.9  37.4    1.1e-25   90.4  37.4    1.2  1  MFS_1     Major Facilitator Superfamily
    4.2e-14   52.3   7.8    4.2e-14   52.3   7.8    3.2  3  Sugar_tr  Sugar (and other) transporter
    0.00091   18.6   3.4    0.00091   18.6   3.4    2.3  3  MFS_4     Uncharacterised MFS-type transporter YbfB


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4  37.4   1.8e-29   1.1e-25       2     340 ..      15     403 ..      14     416 .. 0.82

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 1.8e-29
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 +l+++l +++++ ++ ++p + + +lg s s  ++  ++++lg++++ l++  +s  +Gr++ v+++++ll a++ l+++++++++l+lv+r +qG+++
  CCG92270.1  15 FLLQCLCFFQSGSYTDIIP-YATAELGQSQSHGSWTNGFFFLGQSFGLLIATQISLQYGRKKtVFFFSFLLAASS-LFCALSQNFYLFLVGRTIQGICC 111
                 899****************.*******************************************************.6666656666************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.....Wravfyilaivslla.fvlfllllpeepperkrkspkeee.... 188
                 g+l+ ++++l+ + +p++ r + + l ++++ l + +gp++gg+  +++g     W + f++ a+ +l++ f+l   l +e+ +er  k+p++ +    
  CCG92270.1 112 GVLILGSQSLVFEQSPDSWRLMPLMLGAVASVLPFTIGPVVGGYGKELVGresmsWKYWFVLSAACLLILsFLL--HLCLEDTKERIEKRPWDWKglil 208
                 *****************999999977777888888********7666666666669999999888888883445..555666666666666666678** PP

       MFS_1 189 ...........................................kgtgpaplvpawkallkdpvlwillialllfffgfsg.lltllplylqevlgls.. 241
                                                            + t + plv  + ++l+++    +li+ ++ +fgf + +  +++l l+   + s  
  CCG92270.1 209 lssmlgplqmifnmgddyewfispiidflfflvvisfvcfiyvETTTKEPLVR-IDLFLRKN----FLIGTFSLAFGFLLfYGLWTTL-LVRLQNQSlf 301
                 ******************************************99999999999.99999999....4444444444444424444444.3444444455 PP

       MFS_1 242 glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll....vlvliGfglgfvfpsllalasdlappeeagt 336
                    lag+l+  +al++ ++ +++ rl+ r++ r   ++ ++ll ++++ + ++ ++  + ++++    +++l G+ lg++f sl++l+ + ++p+++ +
  CCG92270.1 302 PPHLAGILFVSMALFSTPIVIWFPRLLGRISLRLSSFVVFFLLGIVYCWMGYFDFY-QKRWFWMqpsfSFILQGISLGLFFLSLTNLIISGLSPKNQLR 399
                 36999999********9999*******99776666666666666666666666666.88999999*988888999***********9999998888766 PP

       MFS_1 337 asgl 340
                 a+ l
  CCG92270.1 400 AIEL 403
                 6655 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   7.8     7e-18   4.2e-14      43     191 ..      41     188 ..      13     194 .. 0.88
   2 ?    0.6   2.6     0.033     2e+02     403     443 ..     217     256 ..     214     263 .. 0.87
   3 !    5.6   3.8     0.001       6.1     285     344 ..     300     360 ..     258     381 .. 0.78

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 7e-18
                 H...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHH CS
    Sugar_tr  43 essvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvs 141
                 +s++  +++ ++f++G+ +G l+a  ++  +GRkk+  ++++l+ ++++ +a+++   ++++++vgR + Gi++G+    +  ++ E +p+++R +  +
  CCG92270.1  41 QSQSHGSWTNGFFFLGQSFGLLIATQISLQYGRKKTVFFFSFLLAASSLFCALSQ---NFYLFLVGRTIQGICCGVLILGSQSLVFEQSPDSWRLMPLM 136
                 3777889************************************************...**************************************999 PP

                 HHHHHHHHHHHHHHHHHHHHHTSS-..TTHHHHHHHCCHHHHHHHHHHGGGS CS
    Sugar_tr 142 lyqlaitfGilvaaifglglnktsn..adgwrillglqlvpallllilllfl 191
                 l  +a ++ + ++ ++g   ++  +  +  w++ + l+++  l+l++ll+++
  CCG92270.1 137 LGAVASVLPFTIGPVVGGYGKELVGreSMSWKYWFVLSAACLLILSFLLHLC 188
                 999999999999999886666655558899*******999999999888766 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.033
                 HHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT- CS
    Sugar_tr 403 sllfpiiteaigggyvflvfaglavlfiifvfffvpetkgr 443
                 +++f + ++  + + + ++   + +++i fv+f ++et  +
  CCG92270.1 217 QMIFNMGDDYEW-FISPIIDFLFFLVVISFVCFIYVETTTK 256
                 578888888888.999999999***************9765 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.001
                 S-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTS CS
    Sugar_tr 285 glsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvak 344
                  + +  l+ i+++ +  ++t ++i++ + +GR  l l ++++ +++ ++++  + +++++++
  CCG92270.1 300 LFPPH-LAGILFVSMALFSTPIVIWFPRLLGRISLRLSSFVVFFLLGIVYCwmGYFDFYQKR 360
                 44444.8999*****************************************95555555544 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   3.4   1.5e-07   0.00091      11     169 ..      27     185 ..      25     202 .. 0.71
   2 ?   -2.0   0.1      0.28   1.7e+03     130     170 ..     207     247 ..     205     328 .. 0.60
   3 ?   -1.9   0.0      0.27   1.6e+03     279     301 ..     367     389 ..     363     404 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.5e-07
       MFS_4  11 sytpiLPallaegqlslsqagllaaaNylGYLvGallaa.falsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvla 108
                 syt i+P   ae++ s s+ ++ +   +lG   G l+a+ ++l+ g+++++   + l++ ++ l +al ++f +fl+ R + G+  +v +    slv++
  CCG92270.1  27 SYTDIIPYATAELGQSQSHGSWTNGFFFLGQSFGLLIATqISLQYGRKKTVFFFSFLLA-ASSLFCALSQNFYLFLVGRTIQGICCGVLILGSQSLVFE 124
                 7***********************************99513455556666555555555.5556699*****************988655555567787 PP

       MFS_4 109 haaaarrervgallfaGvG..lGiavsgllvllllqlglsasslWlalavlsavllllvalll 169
                 +     + r++ l+ + v   l   ++ ++   + +l   +s++W    vlsa+ ll++  ll
  CCG92270.1 125 Q--SPDSWRLMPLMLGAVAsvLPFTIGPVVGGYGKELVGRESMSWKYWFVLSAACLLILSFLL 185
                 7..455566777776666422334455555555555555666667777777777666665554 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.28
       MFS_4 130 iavsgllvllllqlglsasslWlalavlsavllllvalllp 170
                 i++s++l +l + ++++    W++  ++ ++ +l+v+  + 
  CCG92270.1 207 ILLSSMLGPLQMIFNMGDDYEWFISPIIDFLFFLVVISFVC 247
                 56666666666666666666677777777766666654443 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.27
       MFS_4 279 plglivssvllGltflaitalvl 301
                  ++ i+ ++ lGl+fl  t+l +
  CCG92270.1 367 SFSFILQGISLGLFFLSLTNLII 389
                 56889999********9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 3314.27
//
Query:       CCG92271.1  [L=444]
Description: Membrane fusion component of tripartite multidrug resistance system [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-14   53.4   0.2    6.5e-10   38.6   0.0    2.3  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    8.6e-13   48.9   0.4    5.4e-10   39.9   0.0    2.6  2  HlyD_3           HlyD family secretion protein
    4.7e-12   45.6   0.0    2.2e-10   40.3   0.0    2.4  1  HlyD             HlyD membrane-fusion protein of T1SS
    5.8e-11   42.0   1.8    4.1e-08   32.9   1.7    2.8  2  Biotin_lipoyl_2  Biotin-lipoyl like
    4.4e-05   23.2   0.1       0.15   11.9   0.1    2.5  2  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
      0.085   12.5   1.2       0.15   11.7   0.5    1.8  2  DUF4131          Domain of unknown function (DUF4131)
       0.15   12.4   1.9       0.56   10.6   0.5    2.2  2  kleA_kleC        Uncharacterized KorC regulated protein A
       0.24   11.2   1.6       0.24   11.2   0.3    1.6  2  DASH_Spc34       DASH complex subunit Spc34


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   2.3e-05     0.052      20     143 ..      88     122 ..      78     219 .. 0.77
   2 !   38.6   0.0   2.9e-13   6.5e-10     107     175 ..     240     308 ..     225     321 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  20 arvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalkakkklkkkelleaarerLrllgvseeqiaelektgkvqktvtvkapisGv 118
                   v+a+++G+v ++ v+   + Vkk+q L++l+s                                                                 
  CCG92271.1  88 IPVKAQTSGRVVEVLVE-STQYVKKNQVLVRLDS----------------------------------------------------------------- 120
                 44556666666666666.5566666666666655................................................................. PP

                 XXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 119 VteknvreGqyvqpgdtlftiadls 143
                                        l+
  CCG92271.1 121 -----------------------LN 122
                 .......................33 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 2.9e-13
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 107 ktvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgk 175
                  + ++ ap++G+V +++++ G+ v+p+  l++i  l+  Wv+a+  e++l+++k+gq+v+++ + +  +
  CCG92271.1 240 YRCQIVAPVAGYVARRSIQVGDEVTPDRLLMNIVPLDYYWVVANYRETELRKMKPGQPVKIRADIYGRR 308
                 57899*********************************************************9998776 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0053        12       2      30 ..      90     118 ..      89     130 .. 0.88
   2 !   39.9   0.0   2.4e-13   5.4e-10       2      96 ..     244     354 ..     243     364 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0053
      HlyD_3   2 lrApvdGvvvelnveegevvqagdellei 30 
                 ++A  +G+vve+ ve  ++v ++++l+++
  CCG92271.1  90 VKAQTSGRVVEVLVESTQYVKKNQVLVRL 118
                 79***********************9876 PP

  == domain 2  score: 39.9 bits;  conditional E-value: 2.4e-13
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkld.qgsdytlkgkierisp.........tvdaktg..... 85 
                 + Apv+G v+  ++++g+ v++   l+ i+p d ++v a   +++l+++k +gq+v++++d  g  y + g +e + p          +d+ tg     
  CCG92271.1 244 IVAPVAGYVARRSIQVGDEVTPDRLLMNIVPLDYYWVVANYRETELRKMK-PGQPVKIRADiYGRRYLYHGVVEGLEPgsgtvfallPPDNATGnyihv 341
                 89***********************************************5.**********989999*********99655433332223333334555 PP

      HlyD_3  86 ..aykvevslenp 96 
                   +++v+++l+++
  CCG92271.1 342 veRVPVRIRLDPK 354
                 5555577777776 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   9.6e-14   2.2e-10      12      78 ..     126     371 ..      59     373 .. 0.71

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 9.6e-14
                 E.................................................................................................. CS
                 x.................................................................................................. RF
        HlyD  12 a.................................................................................................. 12 
                 a                                                                                                  
  CCG92271.1 126 Afegakqnlamavrkvedlfnkakslrnkiaaqkailgrqrydlglyasgskagvvsvqdaidaqwkvqeiestirqledelhsteswiqkttvwdnpi 224
                 055555555555555555555555555555555555566666666666666666666666666666666666666666666666666666666666666 PP

                 .............................................................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSB CS
                 .............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  13 .............................................................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispd 50 
                                                                              et l+++++gqpv++r d ++++    ++gvV g  p+
  CCG92271.1 225 vlkaavdlknaylalyrcqivapvagyvarrsiqvgdevtpdrllmnivpldyywvvanyrETELRKMKPGQPVKIRADIYGRRY--LYHGVVEGLEPG 321
                 6666666667777777777777777777777777777777777777777777777777899***********************8..************ PP

                 ......................EEEEEEEEEEEETTEEEESSSS-TTEEE CS
                 ......................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  51 ......................rvpvrvvvekaqgpyyplriglkagalv 78 
                                       rvpvr+ ++++   ++plr gl+   +v
  CCG92271.1 322 sgtvfallppdnatgnyihvveRVPVRIRLDPKELIQHPLRLGLSVVTKV 371
                 ********************************************977666 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   1.7   1.8e-11   4.1e-08       2      50 .]      87     135 ..      86     135 .. 0.95
   2 !    6.2   0.0    0.0042       9.4       4      38 ..     243     277 ..     241     287 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.8e-11
  Biotin_lipoyl_2   2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50 
                      v++++a++sGrV++++V+  q+Vk+ +vL++lDs + ++a   a+++la
       CCG92271.1  87 VIPVKAQTSGRVVEVLVESTQYVKKNQVLVRLDSLNQRVAFEGAKQNLA 135
                      799*************************************999999985 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0042
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGdvLaelDsral 38 
                      +I apv+G Va+  ++ G++V    +L+ + + ++
       CCG92271.1 243 QIVAPVAGYVARRSIQVGDEVTPDRLLMNIVPLDY 277
                      7889*****************99888887766666 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   6.8e-05      0.15      43      73 .]      88     118 ..      86     118 .. 0.91
   2 !    8.8   0.0   0.00063       1.4      44      73 .]     243     272 ..     240     272 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.8e-05
                    EEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  43 meieapkaGvvkeilvkeGdtvevgdllaki 73 
                    ++++a+ +G+v+e+lv++ + v+ +++l+++
     CCG92271.1  88 IPVKAQTSGRVVEVLVESTQYVKKNQVLVRL 118
                    57999**********************9986 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00063
                    EEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtvevgdllaki 73 
                    +i ap+aG+v+   +++Gd+v+ + ll+ i
     CCG92271.1 243 QIVAPVAGYVARRSIQVGDEVTPDRLLMNI 272
                    799************************987 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.5   6.8e-05      0.15      26      86 ..      42     114 ..      32     144 .. 0.62
   2 ?   -3.0   0.0       2.3   5.1e+03     115     133 ..     287     305 ..     280     306 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.8e-05
     DUF4131  26 r......rprrrvllllllllllallgfalrapqpnandlsqlles......gqeviveGvvaslpeltgsgt 86 
                 r       +r+++ l ll+l++la+ +f++++ + ++nd +   +           +ve  v+s+  ++++++
  CCG92271.1  42 RdwrawqLTRNKYVLPLLFLFFLAGWWFFFSSNWVATNDAYVTGNVipvkaqTSGRVVEVLVESTQYVKKNQV 114
                 3455666899999************************865533332433333222224444555555554444 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.3
     DUF4131 115 spaeglrpGdrlrltgrlk 133
                  +  +++pG+ +++++ ++
  CCG92271.1 287 TELRKMKPGQPVKIRADIY 305
                 3444899999999998876 PP

>> kleA_kleC  Uncharacterized KorC regulated protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   0.00025      0.56      19      55 ..     127     163 ..     111     168 .. 0.84
   2 ?    0.5   0.0      0.36     8e+02      53      69 ..     182     198 ..     174     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
   kleA_kleC  19 lvarRdkiAaklaeAeeLvrqaeeLRakvyeesaaLe 55 
                 +   ++++A  +++ e+L  +a+ LR k+  ++a L 
  CCG92271.1 127 FEGAKQNLAMAVRKVEDLFNKAKSLRNKIAAQKAILG 163
                 6667889************************999885 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.36
   kleA_kleC  53 aLedrakkrWtleeveq 69 
                 + +d +  +W ++e+e 
  CCG92271.1 182 SVQDAIDAQWKVQEIES 198
                 6789999********97 PP

>> DASH_Spc34  DASH complex subunit Spc34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00011      0.24     154     253 ..     108     208 ..      77     217 .. 0.75
   2 ?   -2.7   0.1       1.8     4e+03     136     179 ..     384     429 ..     368     434 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
  DASH_Spc34 154 dfdvelllkvleelltkyplleakekieelreeYeelseeieeleaeiaeQkkqLeaqnkneses.sseddsesetskskdvdelirkEeeeIeeLerk 251
                  ++ +++l  l+ l ++   ++ak+++    ++ e+l ++ ++l+++ia Qk+ L +q+ +     s  +    + ++  d +  ++  e+ I++Le++
  CCG92271.1 108 YVKKNQVLVRLDSLNQRVAFEGAKQNLAMAVRKVEDLFNKAKSLRNKIAAQKAILGRQRYDLGLYaSGSKAGVVSVQDAIDAQWKVQEIESTIRQLEDE 206
                 45678999999999999**************************************99998876440333444455555566666666666666666666 PP

  DASH_Spc34 252 lk 253
                 l+
  CCG92271.1 207 LH 208
                 54 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
  DASH_Spc34 136 dsgssseka..nrrktafvedfd.velllkvleelltkyplleakek 179
                  ++++ + +  ++ +t f e+ + v++l+k++ e  ++yp +e k++
  CCG92271.1 384 ITEIPANAKtsDYTSTYFSEELSgVDDLIKTIIE-ENRYPQSESKDT 429
                 3333333223345566666655435555555544.356666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 2892.32
//
Query:       CCG92272.1  [L=135]
Description: Nucleotide-binding protein, UspA family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-32  110.6   0.1    1.2e-31  110.2   0.1    1.2  1  Usp        Universal stress protein family
  ------ inclusion threshold ------
       0.17   11.6   0.0       0.26   11.0   0.0    1.3  1  PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.1   1.3e-35   1.2e-31       3     140 ..       4     134 ..       2     135 .] 0.94

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 1.3e-35
                 SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHH CS
         Usp   3 krIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaee 101
                 ++IlV++Dgse+skkAl +Al+ ak++ +++++l v +++++ +  +   e e+  ++l+ a ++       a++++v+ ev++e+gdpa+ il++a+e
  CCG92272.1   4 EKILVGYDGSESSKKALSFALQIAKSFSSKVTILSVMHAPEFNQDMEFVLEREKIVSDLKWAMEK-------AAEEKVELEVKTEMGDPADRILKLAKE 95 
                 79************************************999999888888888888888888776.......579************************ PP

                 TTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEE CS
         Usp 102 edadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvV 140
                  + dl+V+G+rg+s++   l GSvse+vlrh+pc+ l+V
  CCG92272.1  96 GNFDLVVLGRRGLSRVGYWLTGSVSERVLRHSPCSILIV 134
                 **************************************9 PP

>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.9e-05      0.26      41      81 ..       4      44 ..       1      49 [. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.9e-05
                -EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEEEB-HHH CS
   PGM_PMM_I 41 kkvvvGrDtRvssrelaealaaglaanGvevillgllptPa 81
                +k++vG+D+  ss+++ + +++++ +   +v +l++++ P+
  CCG92272.1  4 EKILVGYDGSESSKKALSFALQIAKSFSSKVTILSVMHAPE 44
                79*****************************9999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1018.05
//
Query:       CCG92273.1  [L=137]
Description: Peroxiredoxin family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-22   77.6   3.9    3.2e-19   69.3   3.9    2.0  1  DrsE_2    DsrE/DsrF/DrsH-like family
    2.1e-05   24.8   0.3    5.3e-05   23.6   0.3    1.6  1  DrsE      DsrE/DsrF-like family
     0.0077   16.8   0.2      0.068   13.7   0.0    2.0  2  DUF5479   Family of unknown function (DUF5479)


Domain annotation for each model (and alignments):
>> DrsE_2  DsrE/DsrF/DrsH-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   3.9   5.4e-23   3.2e-19       2     150 ..       2     134 ..       1     137 [] 0.87

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 5.4e-23
                 T-EEEEEE----H.HHHHHHHHHHHHHHTT-EEEEEE-GGGGGGGB-GGG---TT--HHHHHHHHHS-SS--SSS-GGGHHHHHHHHHHHHCT---HHH CS
      DrsE_2   2 kkklaiifskgtldkalaalilAsgAaalglevtiFftFwGLnilrkeekkkvkkkslekmamkmvtrksklskmnmagigtkmmkkvmkekgvaslee 100
                 ++k++ii+++gt dk la   +AsgAaa+ ++v+iF tF+GL ++rk+  k+ +  s  k                +++++t+ mk  m+ek+v+s  +
  CCG92273.1   2 EDKISIILFSGTVDKLLAVATIASGAAAMQKKVQIFVTFYGLLAFRKDAWKTNRRLS--K---------------DFEDFATEAMK-AMEEKKVPSWLD 82 
                 57999******************************************9866543322..2...............45677778776.689999*99999 PP

                 HHHHHHHT.T-EEEEEHHHHHHHT--GGGB-TT-.EEE-HHHHHHHHHC-SE CS
      DrsE_2 101 Lleaakea.gvklvaCqmtmdlmglkkeelidgv.eiagaatylkeaeeadv 150
                  l+ a+e  +v++ aC +tmdl+ +k e+l + v  ++g+ t++++a+ +++
  CCG92273.1  83 TLKVAMEIgDVQVHACGLTMDLLAIKLEDLEPVVsDVVGVGTFVENASGGQI 134
                 9999998627************************************998776 PP

>> DrsE  DsrE/DsrF-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.3   8.9e-09   5.3e-05      21     105 ..      21     126 ..       4     135 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 8.9e-09
                 HHHHHHHHTTT-EEEEEE-GGGGGGGBS....................---TGGGTS---GGGGGGCGG.GT-EEEEEHHHHHHTT--GGGE-.T--EE CS
        DrsE  21 lelalaaaalghevsvffygdGvllllk....................gqtanpadeknlaellkalke.ygvklyvCgqaakargldededl.gvgve 97 
                   +a  aaa+  +v +f++  G l+++k                     +  ++++ ++  ++lk ++e  +v++++Cg +++   ++  edl  v   
  CCG92273.1  21 ATIASGAAAMQKKVQIFVTFYGLLAFRKdawktnrrlskdfedfateaMKAMEEKKVPSWLDTLKVAMEiGDVQVHACGLTMDLLAIK-LEDLePVVSD 118
                 46778889999*****************************99999999777788889999*********566****************.7788544555 PP

                 EE-HHHHH CS
        DrsE  98 vsglgela 105
                 v+g+g+++
  CCG92273.1 119 VVGVGTFV 126
                 66666665 PP

>> DUF5479  Family of unknown function (DUF5479)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.1   6.2e+02      55      84 ..      16      45 ..      10      55 .. 0.77
   2 !   13.7   0.0   1.1e-05     0.068      63     100 ..      83     122 ..      72     123 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.1
     DUF5479 55 kllaiaqltyrinlktkqlqikfcsmaalv 84
                klla+a ++       k++qi +     l 
  CCG92273.1 16 KLLAVATIASGAAAMQKKVQIFVTFYGLLA 45
                899999999999888888888655544444 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.1e-05
     DUF5479  63 tyrinlktkqlqikfc..smaalvfsledlesvvpevlgv 100
                 t ++ ++  ++q++ c  +m  l + ledle vv +v+gv
  CCG92273.1  83 TLKVAMEIGDVQVHACglTMDLLAIKLEDLEPVVSDVVGV 122
                 5677888889999999334678999**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1052.53
//
Query:       CCG92274.1  [L=80]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-17   63.4   0.0    1.4e-17   63.2   0.0    1.0  1  TusA      Sulfurtransferase TusA
  ------ inclusion threshold ------
       0.12   12.9   0.0       0.13   12.7   0.0    1.2  1  ILEI      Interleukin-like EMT inducer


Domain annotation for each model (and alignments):
>> TusA  Sulfurtransferase TusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   1.6e-21   1.4e-17       1      69 [.       8      77 ..       8      78 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 1.6e-21
                EEEEBTT-STTCCHHHHHHHHCCCGCT-EEEEEESSCHHHHHHHHHHHHHTEEEEEEE-.GCC-EEEEEE CS
        TusA  1 ielDlrGlvCPePllklkkalekleegevlevladdpaatediprfakklghelvevee.edgeyrivir 69
                +e+D+rG  CP+Pl++  + +++++ g+v+ v++ d+++++d+p++ kk +hel++ e  e+g  r++ +
  CCG92274.1  8 KEVDARGSFCPGPLMEMIRLIRSAQVGDVVAVISADEGTKKDLPAWIKKAKHELIAEEPvEGGATRFICK 77
                68***************************************************99998866677777655 PP

>> ILEI  Interleukin-like EMT inducer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.5e-05      0.13      30      55 ..      23      48 ..       5      68 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
        ILEI 30 rlveflksipdgsiVlvavkdeassn 55
                ++++ ++s + g +V+v++ de++++
  CCG92274.1 23 EMIRLIRSAQVGDVVAVISADEGTKK 48
                89*********************664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 582.56
//
Query:       CCG92275.1  [L=390]
Description: NAD(FAD)-dependent dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-16   59.2   0.0    1.4e-15   57.3   0.0    1.8  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0026   16.7   0.1     0.0037   16.2   0.1    1.2  1  Trp_halogenase  Tryptophan halogenase
  ------ inclusion threshold ------
       0.13   12.3   0.1         14    5.6   0.0    2.3  2  NAD_binding_9   FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   2.3e-19   1.4e-15       2     278 ..      13     297 ..      12     318 .. 0.77

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 2.3e-19
                  SEEEE--SHHHHHHHHHHHH....HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCE CS
                  xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq....agakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegde 95 
                  +++++GgG +G  +a  la+    + a +t++ +    +  ++   ++  g++++++ia+ + + l   + l+ + +v ++d ++++v+++     ++
   CCG92275.1  13 NILILGGGTGGSIVANILARslspQDASITVI-SASPQHIYQPYQLYIPFGYQDPRKIARSERSLLHRRVSLVVD-PVEELDVKNQTVVCR-----SH 103
                  799*****************99888*******.6666667778888999999*****999555667778999999.9********9**994.....45 PP

                  EEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..SEEEEES-S.......HHHHHHHHHHHHHT-......EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx.......xxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
  Pyr_redox_2  96 ekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp..krivvvGgG.......yiGvElAaalaklgk......evtlveardrll 178
                  +++ yd+lv+AtGs+    +ipG +e++ ++  t + a al +kl++    ++vvG G       +  +E++ +l ++        +  +++  +  l
   CCG92275.1 104 KSYPYDYLVIATGSTVDEQQIPGFKEGADHF-YTPEAAFALYEKLQNfnGGTIVVGIGglpykcpVAPIEFTFMLEEFLTkkgirqQSEIIYTFP--L 198
                  69**********************8888777.777777777777777886667777652232222233555555655543223333333444432..2 PP

                  .TTS-.HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EE.EETTEEE--TTS.BES.STTE CS
                  .xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xxx.xxxx RF
  Pyr_redox_2 179 .rald.kelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklglel.derggivvdefl.rtn.vpgi 271
                     ++ k +++++++ + k+++++ l  +  ei ++++  + +  +g+e+ +dl+v+    +  + l+    g e+ d +g+i++d+++ ++   +++
   CCG92275.1 199 nDVFNiKTAADYIKADFDKRNIKTELFFNLAEIHPEKK--TAESIEGTELSYDLLVMTPPHKGAPFLR----GHEIaDADGWIQTDRHSlKVAqLENV 290
                  34444699*****************************9..89999***********987777776665....6666589*******99977766**** PP

                  EE-GGGC CS
                  xxxxxxx RF
  Pyr_redox_2 272 yaiGDva 278
                  + +GD +
   CCG92275.1 291 WSLGDTT 297
                  *****98 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   6.3e-07    0.0037       1      33 [.      13      46 ..      13      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.3e-07
                    EEEEE--SHHHHHHHHHHHHHTTTS.SEEEEEE- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgk.levtlves 33
                    +i+i+GGGt G+++A++la+ l+ + +++t++ +
      CCG92275.1 13 NILILGGGTGGSIVANILARSLSPQdASITVISA 46
                    699*******************9889*****976 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0024        14       2      36 ..      16      49 ..      15      58 .. 0.82
   2 ?    4.4   0.0    0.0055        33     116     155 ..      80     117 ..      68     118 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0024
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsep 36
                   i G+G  G  v++ L+++  ++++ +it++  s+ 
     CCG92275.1 16 ILGGGTGGSIVANILARSL-SPQDASITVISASPQ 49
                   88******99999999997.9999****9987665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0055
  NAD_binding_9 116 tvevhraevvdleeradgqavlladgaslaadaVvLAlGh 155
                    +v+++ + v++l+ +++  +v+ ++ +s+ +d++v+A+G 
     CCG92275.1  80 RVSLVVDPVEELDVKNQ--TVVCRSHKSYPYDYLVIATGS 117
                    56777777777777655..68899***************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2732.44
//
Query:       CCG92276.1  [L=45]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 333.41
//
Query:       CCG92277.1  [L=183]
Description: Acetyltransferase, RimL family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-32  111.0   0.0      8e-32  110.8   0.0    1.0  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
      2e-09   37.7   0.0    2.4e-09   37.5   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    0.00043   20.0   0.0    0.00066   19.4   0.0    1.3  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
     0.0025   17.9   0.0     0.0029   17.8   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.066   13.1   0.0       0.13   12.1   0.0    1.5  2  NT5C             5' nucleotidase, deoxy (Pyrimidine), cytosol
       0.15   11.7   0.3       0.19   11.3   0.3    1.1  1  GNAT_acetyltran  GNAT acetyltransferase


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.0   2.7e-35     8e-32       1     138 []      13     153 ..      13     153 .. 0.91

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 2.7e-35
  Acetyltransf_3   1 RLlLrplteeDlealfelrsdpevmry....lpepltleeaeewlerawaeeseeegygwaivlkdtgv.iGsvglrdleeedeeaelgymlaps 90 
                     RL+Lrpl+++D e++++l+ dp+   +    ++ p +++ a +wl++++   +++e++ +ai+lk++   iG v l+ +e ++e+ae+g ++a+s
      CCG92277.1  13 RLILRPLEASDEERVVQLAGDPDSS-WgtrsITYPDSVDRAASWLREHMDMMKKGESLSLAIILKKNLTlIGAVILF-YELRHERAEIGCWIAKS 105
                     9**********************76.74344555*************9888888999*****99777656****999.6677777********** PP

  Acetyltransf_3  91 fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     +w kGy+tea+ra+l+yaf+ l+l+++ a + ++N aS r++eklG++
      CCG92277.1 106 YWSKGYGTEACRAVLHYAFNVLKLNKISAYCLARNIASLRLIEKLGMK 153
                     **********************************************97 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   7.9e-13   2.4e-09      33     117 .]      69     152 ..      27     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 7.9e-13
                     CEEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  33 egllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYeklGF 117
                      +l +  +++ +liG + l+       ++ + ++++++++y+ kG+G++  +a++++a++   ++ki +++ + n a+ rl eklG+
      CCG92277.1  69 LSLAIiLKKNLTLIGAVILFYELR---HERAEIGCWIAKSYWSKGYGTEACRAVLHYAFNVlKLNKISAYCLARNIASLRLIEKLGM 152
                     244445788889***998877776...455555****************************999*********************95 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.2e-07   0.00066      72     141 ..      88     156 ..      81     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.2e-07
                     CS---TT-EEEEEEESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  72 yydaepgdrGiHlligeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                     +y+ +     i ++i+ +++  kg++t+  ra++hy+f+  + +++ +   +rN +++rl+ek+G+++e+
      CCG92277.1  88 FYELRHERAEIGCWIA-KSYWSKGYGTEACRAVLHYAFNVLKLNKISAYCLARNIASLRLIEKLGMKFEG 156
                     5677777777888888.67889*******************************************99986 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   9.6e-07    0.0029      73     148 ..      91     166 ..      35     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 9.6e-07
  Acetyltransf_4  73 akdwkaelsvylaerdnnkeglgrelidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkng 148
                      + + ae+  ++a +   ++g+g e   a+  ++     ++++ a   + n++s  + ++lG +++g ++k+ k+ g
      CCG92277.1  91 LRHERAEIGCWIA-KSYWSKGYGTEACRAVLHYAfNVLKLNKISAYCLARNIASLRLIEKLGMKFEGCLRKHLKVRG 166
                     57899*******9.89*****************9999***********************************99887 PP

>> NT5C  5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.4e-05      0.13      90     133 ..      40      88 ..      15      98 .. 0.74
   2 ?   -2.8   0.0       1.7     5e+03      53      60 ..     158     165 ..     128     171 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.4e-05
        NT5C  90 aallqfydavkekveWldehlplipyrn.....lvlvkekdlvrgDvli 133
                 ++ + ++d+v+    Wl+eh+ ++++++     ++l k+ +l+++ +l+
  CCG92277.1  40 TRSITYPDSVDRAASWLREHMDMMKKGEslslaIILKKNLTLIGAVILF 88 
                 466789*******************987444335666666777777776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.7
        NT5C  53 lyrfltep 60 
                 l ++l+ +
  CCG92277.1 158 LRKHLKVR 165
                 33444555 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   6.2e-05      0.19     173     237 ..      87     155 ..      64     159 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.2e-05
  GNAT_acetyltran 173 sSysvyekgieieidTkedyrrkgLAtivaaalileclkrglyPsWDaa....neaSvaLaekLGYefe 237
                        y   ++ +ei  + ++ y  kg+ t ++ a +  +++  +  +  a     n aS++L ekLG +fe
       CCG92277.1  87 LFYELRHERAEIGCWIAKSYWSKGYGTEACRAVLHYAFNVLKLNKISAYclarNIASLRLIEKLGMKFE 155
                      445578999**************************998755555555555566************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1420.78
//
Query:       CCG92278.1  [L=225]
Description: Phosphate uptake regulator [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-37  128.2   9.3    1.2e-19   70.5   2.7    2.1  2  PhoU      PhoU domain
  ------ inclusion threshold ------
      0.049   13.7   1.2        1.2    9.2   0.0    2.8  3  ORF6C     ORF6C domain


Domain annotation for each model (and alignments):
>> PhoU  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   2.7   1.4e-23   1.2e-19       2      88 ..      12      98 ..      11      99 .. 0.97
   2 !   62.1   0.5   5.9e-21   5.3e-17       1      88 [.     114     198 ..     114     199 .. 0.92

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 1.4e-23
                HHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PhoU  2 rrmaeiveemlddalealeekdtelarevierddeidrlekeiersllealakrqplaedlrellsllriardlERigDhavniaer 88
                  ma+i+   l++al+al e+++ela+ vi+ d+++d le +i++++++ +a+++p+a d r +l + +i++dlERigD+av i+++
  CCG92278.1 12 LLMASIAARSLQLALKALIERNDELAKNVIKGDEDLDSLEVKIDDQIITFIATHSPVAIDCRLALVASKISSDLERIGDQAVTISRI 98
                67***********************************************************************************97 PP

  == domain 2  score: 62.1 bits;  conditional E-value: 5.9e-21
                 HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PhoU   1 lrrmaeiveemlddalealeekdtelarevierddeidrlekeiersllealakrqplaedlrellsllriardlERigDhavniaer 88 
                 +++maei+++m ++a++++ +++ +    v+++d+ +dr+ ke+   l++++  ++p    + + l+l+ ++r +ER +Dha+niae 
  CCG92278.1 114 IEKMAEITRKMYQEAIDSFITGNPKETLSVVREDKIVDRMNKELFGCLVKIMR-EDPD--AIPQGLNLMLVSRAIERAADHAKNIAEE 198
                 689*****************************************999888885.4554..3899**********************97 PP

>> ORF6C  ORF6C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.027   2.4e+02       2      28 ..      26      52 ..      25      64 .. 0.85
   2 ?    9.2   0.0   0.00014       1.2      77     100 ..     108     131 ..     104     142 .. 0.87
   3 ?   -0.8   0.0      0.18   1.6e+03       2      31 ..     178     207 ..     177     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.027
       ORF6C  2 lelllealkehdekieeidervkkLee 28
                l++l+e + e+ +++ + de++++Le 
  CCG92278.1 26 LKALIERNDELAKNVIKGDEDLDSLEV 52
                889999*******************93 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00014
       ORF6C  77 lkrefgVasYkdikkkdfdkAlef 100
                 lk +f++++  +i +k +++A++ 
  CCG92278.1 108 LKSYFNIEKMAEITRKMYQEAIDS 131
                 89*******************974 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.18
       ORF6C   2 lelllealkehdekieeidervkkLeenmp 31 
                 l+l  +a++++  + ++i+e+v +L + + 
  CCG92278.1 178 LMLVSRAIERAADHAKNIAEEVYYLYRAKD 207
                 677788899999999999999999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1693.66
//
Query:       CCG92279.1  [L=72]
Description: hypothetical protein MFUM_550032 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 547.27
//
Query:       CCG92280.1  [L=121]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-07   29.9   0.1    5.9e-07   29.5   0.1    1.2  1  Phage_CI_repr   Bacteriophage CI repressor helix-turn-helix d
    0.00051   19.8   0.1    0.00075   19.3   0.1    1.3  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
    0.00059   19.8   0.1     0.0015   18.6   0.0    1.7  2  HTH_3           Helix-turn-helix
     0.0048   17.3   2.1     0.0072   16.7   2.1    1.3  1  HTH_26          Cro/C1-type HTH DNA-binding domain
  ------ inclusion threshold ------
      0.022   14.5   0.1      0.086   12.7   0.0    2.0  2  HTH_23          Homeodomain-like domain
      0.026   14.6   0.1       0.11   12.6   0.0    2.0  2  HTH_19          Helix-turn-helix domain
      0.028   14.6   0.0      0.045   14.0   0.0    1.4  1  Phage_CII       Bacteriophage CII protein


Domain annotation for each model (and alignments):
>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   2.3e-10   5.9e-07       3      64 ..      15      76 ..      13      77 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2.3e-10
                   HHHHHHHHT-SSCHHHHCCTT--HHHHHHHHHSSS--HHHHHHHHHHH---HHHHHC-SS-S CS
  Phage_CI_repr  3 leRlmsaygvkmqkeLAdlLgiakssvstwvrRdffPgdvvvtcaletdtsLewLatGkgqm 64
                   ++   sa  +++q +LA++Lgi   ++  w +  +++ +    + +++d+s++wL +G g+m
     CCG92280.1 15 IKEALSARLCNKQLALAKELGIHECTICRWQQGKSISLKHAALLCEKLDISMDWLILGRGEM 76
                   55566777899**************************************************9 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   2.9e-07   0.00075       7      39 ..      23      54 ..      15      63 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.9e-07
  YdaS_antitoxin  7 ivGgqkaLAealgvsqqaVsqWlkgkkqvpaer 39
                    +++ q aLA++lg+++ ++++W +g k+++ ++
      CCG92280.1 23 LCNKQLALAKELGIHECTICRWQQG-KSISLKH 54
                    688999****************998.6667666 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   5.7e-07    0.0015      12      55 .]      27      69 ..      21      69 .. 0.95
   2 ?   -2.2   0.1       1.7   4.4e+03      12      18 ..     113     120 ..     108     121 .] 0.54

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.7e-07
                HHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3 12 qeeLAeklGvsrstisriEnGernPsletlkklakaLgvsldel 55
                q  LA++lG++  ti r+  G++ +sl+ + +l++ L++s+d+l
  CCG92280.1 27 QLALAKELGIHECTICRWQQGKS-ISLKHAALLCEKLDISMDWL 69
                678******************77.*******************8 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
                 H.HHHHHH CS
       HTH_3  12 q.eeLAek 18 
                 + +e+A++
  CCG92280.1 113 LlKEIAKR 120
                 33566655 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.1   2.8e-06    0.0072       1      55 [.      14      67 ..      14      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.8e-06
      HTH_26  1 kLrelmadrgi.tkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpg 55
                +++e++ +r + ++  La+ +gi++ t+ r+ +gk  ++sl++ + +C+ L+++++
  CCG92280.1 14 RIKEALSARLCnKQLALAKELGIHECTICRWQQGK--SISLKHAALLCEKLDISMD 67
                689999999999999*******************9..***************9986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.4e-05     0.086      23      39 ..      30      46 ..      26      48 .. 0.90
   2 ?   -2.6   0.0         2   5.2e+03      21      27 ..     115     121 .]     114     121 .] 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.4e-05
      HTH_23 23 IAreLgvsrrTvyrwlk 39
                 A+eLg+++ T++rw +
  CCG92280.1 30 LAKELGIHECTICRWQQ 46
                59*************75 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2
      HTH_23  21 reIAreL 27 
                 +eIA++L
  CCG92280.1 115 KEIAKRL 121
                 7999987 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.2e-05      0.11       1      64 [.      12      74 ..      12      75 .. 0.93
   2 ?   -0.9   0.0      0.68   1.7e+03      44      57 ..      92     105 ..      82     118 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.2e-05
      HTH_19  1 GerLkeaReelgl.tqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllqged 64
                G+r+kea + +   +q +la++lgi    i  +  gk   +s +    ++e+l+i+ ++l+ g +
  CCG92280.1 12 GKRIKEALSARLCnKQLALAKELGIHECTICRWQQGK--SISLKHAALLCEKLDISMDWLILGRG 74
                89********99999*******************997..599999***************98876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.68
      HTH_19  44 lllkiaealgidle 57 
                 +l+++ e+ +++++
  CCG92280.1  92 DLKDVDEFRKLPED 105
                 57888888888876 PP

>> Phage_CII  Bacteriophage CII protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05     0.045      11      46 ..      13      47 ..       4      68 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                HHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHHHH CS
   Phage_CII 11 driesdlLnkiailgqrkvaeaiGvdeskisrwktD 46
                +ri+ +l  ++    q  +a+ +G++e  i rw++ 
  CCG92280.1 13 KRIKEALSARLCN-KQLALAKELGIHECTICRWQQG 47
                6777777777754.57899**************864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 977.86
//
Query:       CCG92281.1  [L=227]
Description: hypothetical protein MFUM_560002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1763.62
//
Query:       CCG92282.1  [L=64]
Description: hypothetical protein MFUM_560003 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 504.55
//
Query:       CCG92283.1  [L=297]
Description: Methylase involved in ubiquinone/menaquinone biosynthesis (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-20   71.1   0.0    1.8e-19   70.2   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    6.4e-19   68.2   0.0    8.6e-19   67.8   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    6.4e-18   65.1   0.0    9.4e-18   64.6   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      1e-17   64.6   0.0    2.1e-17   63.6   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    2.9e-16   60.0   0.0    4.8e-16   59.3   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
      3e-13   49.6   0.0    4.3e-13   49.1   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      6e-11   42.5   0.0    3.4e-10   40.0   0.0    2.2  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    1.3e-07   31.4   0.0    1.9e-07   30.8   0.0    1.2  1  MTS              Methyltransferase small domain
    1.6e-05   24.4   0.0    2.1e-05   24.0   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
      3e-05   23.6   0.0    0.00012   21.6   0.0    1.9  3  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00017   21.2   0.0    0.00037   20.1   0.0    1.5  1  MetW             Methionine biosynthesis protein MetW
     0.0005   19.3   0.0     0.0029   16.7   0.0    1.9  2  DREV             DREV methyltransferase
    0.00068   19.1   0.0      0.017   14.6   0.0    2.2  1  Methyltransf_4   Putative methyltransferase
    0.00084   19.0   0.0     0.0015   18.2   0.0    1.4  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
     0.0011   18.7   0.0     0.0015   18.3   0.0    1.3  1  GCD14            tRNA methyltransferase complex GCD14 subunit
  ------ inclusion threshold ------
      0.011   14.9   0.0       0.02   14.0   0.0    1.4  1  Fibrillarin      Fibrillarin
      0.026   13.9   0.1        2.7    7.3   0.0    2.1  2  TehB             Tellurite resistance protein TehB
      0.037   14.0   0.0      0.064   13.2   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
      0.055   13.6   0.0       0.12   12.5   0.0    1.5  1  FtsJ             FtsJ-like methyltransferase
      0.073   12.8   0.0       0.33   10.7   0.0    1.9  2  DUF938           Protein of unknown function (DUF938)
      0.078   13.2   0.0        0.2   11.9   0.0    1.7  1  DRE2_N           Fe-S cluster assembly protein DRE2 N-terminu
      0.087   12.8   0.0        2.3    8.2   0.0    2.2  2  Methyltransf_18  Methyltransferase domain
       0.16   10.8   0.0       0.35    9.7   0.0    1.6  2  Methyltransf_9   Protein of unknown function (DUF1698)


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   2.3e-22   1.8e-19       1      94 [.      67     161 ..      67     163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 2.3e-22
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseeglkvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      Ld+GcG+G l+++ a+ +   + v+g+D+s++ ++la++k +++   ++f+ +   +l  +++n +D+v+++ v+h++ d ++al+ei R+Lkp
       CCG92283.1  67 LDIGCGSGELTAYTAQFVkpkGWVLGIDPSPYRIELANQKRNKN---LSFRIGGSDDLsSLPSNFYDVVYLNYVFHWIFDKNRALEEIFRILKP 157
                      8**************8888889***************8888876...799*******988********************************** PP

                      EEEE CS
  Methyltransf_11  91 gGll 94 
                      gG+l
       CCG92283.1 158 GGRL 161
                      **97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   1.1e-21   8.6e-19       2     127 ..      61     183 ..      60     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 1.1e-21
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkile 95 
                      + g +vlD+GCG+Gelt   a+ + pk+ v GiD s+  ielA++++     +n++F++g   +l++ l  + +D++  n v++ + d++ +le
       CCG92283.1  61 KAGEKVLDIGCGSGELTAYTAQFVKPKGWVLGIDPSPYRIELANQKRN----KNLSFRIGGSDDLSS-LPSNFYDVVYLNYVFHWIFDKNRALE 149
                      67899*****************999********************766....899****99999887.56689********************* PP

  Methyltransf_31  96 eiervlkpggilliedpr..llaelp....akveeesk 127
                      ei+r lkpgg+l +++ +            ++++e+ +
       CCG92283.1 150 EIFRILKPGGRLGLCSGDkeQ----HsknfKILSESIQ 183
                      *****************9332....2212244433333 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   1.2e-20   9.4e-18      14     162 ..      56     216 ..      39     219 .. 0.72

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 1.2e-20
  Methyltransf_23  14 erllpklraggrvLdiGcGtGillevlrengf...svtgvDlspeaveiaekakkaqkdqfdeqeaae....pqgkfdlIvlrevlehvpdppe 100
                      + ll+  +ag +vLdiGcG+G+l+ + +++++    v g+D+sp  +e+a + k +++ +f+    ++    p++ +d+++l++v++++ d  +
       CCG92283.1  56 H-LLK-IKAGEKVLDIGCGSGELTAYTAQFVKpkgWVLGIDPSPYRIELA-NQKRNKNLSFRIGGSDDlsslPSNFYDVVYLNYVFHWIFDKNR 146
                      3.553.78999******************988867799**********99.555555555533333336777999******************* PP

  Methyltransf_23 101 llrqiatllkpgGylllseplasl.....k.edrllldw.lylvpagrhi..sffsarslkelleeaGlev 162
                      +l  i+++lkpgG+l l+  ++++     k   ++++ + +  + + +++  + ++ ++l +l+ ++G+ +
       CCG92283.1 147 ALEEIFRILKPGGRLGLCSGDKEQhsknfKiLSESIQAVlGSTASK-DLVvpYHINKEELHNLVIKSGFII 216
                      *****************99777763443322333334442233333.333346667777777777777755 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   2.7e-20   2.1e-17       1      97 []      66     159 ..      66     159 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 2.7e-20
                      EEEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS.SSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeeglnvefvqgdaedlp.fedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      vLd+GcG+G+lt++ a+ + +k+ v+g+D+s+  +e a+++    + n++f+ g  +dl+ ++++ +D+v++++++h++   d  +al+ei+r+
       CCG92283.1  66 VLDIGCGSGELTAYTAQFVkPKGWVLGIDPSPYRIELANQKR---NKNLSFRIGGSDDLSsLPSNFYDVVYLNYVFHWIF--DKNRALEEIFRI 154
                      9***************999659******************99...459**********97579*********999**976..5569******** PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      LkpgG
       CCG92283.1 155 LKPGG 159
                      ****9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   6.2e-19   4.8e-16       1      99 []      67     161 ..      67     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 6.2e-19
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklL 93 
                      L+iGcG+G+l+++ ++   p   ++g+D+sp  i     +la +++n+n  +++   d+l++ +++ +D+v+++ v+h++ d++++l++i + L
       CCG92283.1  67 LDIGCGSGELTAYTAQFVkPKGWVLGIDPSPYRI-----ELANQKRNKNLSFRIGGSDDLSSLPSNFYDVVYLNYVFHWIFDKNRALEEIFRIL 155
                      8*************99997777777*********.....88888888999999999999999999***************************** PP

  Methyltransf_12  94 kpgGrl 99 
                      kpgGrl
       CCG92283.1 156 KPGGRL 161
                      ****97 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   5.5e-16   4.3e-13      38     184 ..      53     193 ..      41     214 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 5.5e-16
                      HHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TT.S-T-EEEEEEES-GGG-S CS
  Ubie_methyltran  38 fveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpf.eddsfDvvtvsfGlrnvt 130
                      ++++l   k g+kvlD+ +G+g+l++  ++ v+ kg v ++D ++  ++ +++k ++    n+ f  + + +L     + +Dvv + + +  + 
       CCG92283.1  53 KLIHLLKIKAGEKVLDIGCGSGELTAYTAQFVKPKGWVLGIDPSPYRIELANQKRNK----NLSFRIGGSDDLSSlPSNFYDVVYLNYVFHWIF 142
                      5667778899****************************************9998764....67787888888875156999************* PP

                      -HHHHHHHHHHHEEEEEEEEEEEE----SHHHHHHHHHHHH.HHHHHHHHHHS- CS
  Ubie_methyltran 131 DklkaLkeayrvlkpGGrlvvlefskvelpllsqayelyskevlPvlGkllakd 184
                      Dk++aL+e++r+lkpGGrl          +  s+ +++ s ++  vlG+  +kd
       CCG92283.1 143 DKNRALEEIFRILKPGGRLGLCSG---DKEQHSKNFKILSESIQAVLGSTASKD 193
                      ******************865443...334556667777777777777666555 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   4.3e-13   3.4e-10      54     119 ..      41     108 ..      26     190 .. 0.68
   2 ?   -1.8   0.0       2.7   2.1e+03      17     180 ..     230     257 ..     217     282 .. 0.54

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 4.3e-13
                 EEE--HHHH..HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHH CS
        PCMT  54 atiSaphmv..alalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlk 119
                 +  S+p+     +++ ll++k+g++vL++G+GsG lta +a++v++kg v++i+ ++  +e a+++ +
  CCG92283.1  41 QRLSQPQFQqgKKLIHLLKIKAGEKVLDIGCGSGELTAYTAQFVKPKGWVLGIDPSPYRIELANQKRN 108
                 4567776652247899**************************************99987777765432 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.7
                 --HHHHHHHHHS-GGGGSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHH CS
        PCMT  17 ksdkvaealeevdReefvpesfkekaYedaplsigynatiSaphmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeak 115
                   ++v+e le+ d                                                                                      
  CCG92283.1 230 SPKEVIEFLEASDF------------------------------------------------------------------------------------- 243
                 44444444444444..................................................................................... PP

                 HHHHHCTTCSEEEEES-GGGTTGGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEESBSSSEE CS
        PCMT 116 rnlkkldlenvivvvgDGrkGyeekaPYdaihvgaaapeiPealidQLkeGGrlvvPvgeeeeQv 180
                                                                    G +++ + ee++Q+
  CCG92283.1 244 ---------------------------------------------------GNFLAGITEEKRQR 257
                 ...................................................44444455444444 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   2.5e-10   1.9e-07      23     141 ..      54     167 ..      44     192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 2.5e-10
                 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHHH CS
         MTS  23 LletlpkelsgkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsNPPfhagkatelavaee 120
                 L++ l+ ++ +kvlD+GcG G l+a  a++ +    v  +d + + +e+a++  ++n l+ ++  sd l+ ++ + +d++  N  fh   + ++++ ee
  CCG92283.1  54 LIHLLKIKAGEKVLDIGCGSGELTAYTAQFVKPKGwVLGIDPSPYRIELANQKRNKN-LSFRIGGSDDLSSLPSNFYDVVYLNYVFHWIFD-KNRALEE 150
                 67788888999*****************986555549*************9987776.57***************************9998.5555566 PP

                 HHHHHHHHEEEEEEEEEEEET CS
         MTS 121 liaeAkeaLkegGeLliVanr 141
                 ++    ++Lk+gG+L +    
  CCG92283.1 151 IF----RILKPGGRLGLCSGD 167
                 65....689999999776544 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.7e-08   2.1e-05      42     162 ..      42     161 ..      18     183 .. 0.66

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.7e-08
                 -HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---...--SEEEEES-G CS
        CMAS  42 tLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde...kvdrvvsvgaf 137
                  L + q ++ + +++ l++k+G+++LdiGcG G+l+ ++++   vk  g  l  +   + + +++++  +++ + ++ +  dl+    ++  vv ++ +
  CCG92283.1  42 RLSQPQFQQGKKLIHLLKIKAGEKVLDIGCGSGELTAYTAQF--VKPKGWVLGIDPSPY-RIELANQKRNKNLSFRIGGSDDLSSlpsNFYDVVYLNYV 137
                 68899999999*************************999987..444444444333322.223333333444444444444444333366666666666 PP

                 GGTSGGGHHHHHHHHHHHS-TT-EE CS
        CMAS 138 ehvgkenydtffkklkkllkedGll 162
                  h  +++  +  ++++++lk++G+l
  CCG92283.1 138 FHWIFDKNRA-LEEIFRILKPGGRL 161
                 6655555333.45566666666665 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.5e-07   0.00012     159     258 ..      60     163 ..      52     186 .. 0.74
   2 ?   -1.9   0.0       2.2   1.7e+03     244     272 ..     203     231 ..     199     242 .. 0.80
   3 ?   -2.5   0.0       3.5   2.7e+03     258     279 ..     247     268 ..     232     273 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.5e-07
        PrmA 159 vkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.klevalseellk..eekadvivaNILaevli...elaedikklvk 251
                 +k+ge+vlD+G+GSG L+   a++   k   + iD+   ++  +N ++Nk  + ++    s++l +  ++ +dv+  N + + +    + +e+i +++k
  CCG92283.1  60 IKAGEKVLDIGCGSGELTAYTAQFVKPKGWVLGIDPSPYRIELANQKRNKNLSfRI--GGSDDLSSlpSNFYDVVYLNYVFHWIFdknRALEEIFRILK 156
                 6899*************998888887775555555555555566777776444344..34444443334889******9999996333678999999** PP

        PrmA 252 eggllil 258
                 +gg+l l
  CCG92283.1 157 PGGRLGL 163
                 *999864 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.2
        PrmA 244 edikklvkeggllilSGilkekaeevaea 272
                 e++ +lv ++g +i S +++ek++ v++ 
  CCG92283.1 203 EELHNLVIKSGFIIDSLMVEEKTNYVKSP 231
                 56778899999999999999999999874 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.5
        PrmA 258 lSGilkekaeevaealeqgfel 279
                 l Gi +ek++++ +  +q+++ 
  CCG92283.1 247 LAGITEEKRQRILSLFKQKLSA 268
                 6799999999999888877654 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.8e-07   0.00037      11     102 ..      60     155 ..      52     158 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.8e-07
        MetW  11 ikpgsrvldlGcGdGellellkeekqvdgr..Gleldeegvaecvak...Glsviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldellrig 102
                 ik+g +vld+GcG Gel  + ++  + +g   G++ +   +  + +k    ls   g   +dl+  +++ +d+v l+  +  + + ++ l+e++ri 
  CCG92283.1  60 IKAGEKVLDIGCGSGELTAYTAQFVKPKGWvlGIDPSPYRIELANQKrnkNLSFRIGG-SDDLSSLPSNFYDVVYLNYVFHWIFDKNRALEEIFRIL 155
                 899***************9998876666643378888888877777611145544444.469*********************************95 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.7e-06    0.0029      94     184 ..      62     161 ..      40     165 .. 0.80
   2 ?   -0.0   0.0      0.49   3.8e+02     100     143 ..     242     285 ..     209     296 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.7e-06
        DREV  94 edkklldlGaGdGeitkrvaptfee..........vyatelsetmrdrlkkkkynvlsalelqetdvkl.dlilclnlldrcfdplklledirsalepn 181
                   +k+ld+G G Ge+t   a++++            y  el+++ r+  k + +++ +  +l     ++ d++    ++   fd  + le+i  +l+p 
  CCG92283.1  62 AGEKVLDIGCGSGELTAYTAQFVKPkgwvlgidpsPYRIELANQKRN--KNLSFRIGGSDDLSSLPSNFyDVVYLNYVFHWIFDKNRALEEIFRILKPG 158
                 4579*******************999**9998888899999887665..6899********999888752666666688999****************9 PP

        DREV 182 grv 184
                 gr 
  CCG92283.1 159 GRL 161
                 985 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.49
        DREV 100 dlGaGdGeitkrvaptfeevyatelsetmrdrlkkkkynvlsal 143
                 d+G     it+  ++ +  ++   ls tm  +    ky+ l  +
  CCG92283.1 242 DFGNFLAGITEEKRQRILSLFKQKLSATMTSQGIPMKYRTLILI 285
                 45555567888889999999999999999999999999887665 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.2e-05     0.017       4     132 ..      65     180 ..      62     213 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.2e-05
                     EEEEET-TTSHHHHHHHH.HSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS-TTSEEEEEEES-----SGGGGGGSTTSH CS
  Methyltransf_4   4 vvleiGcGkGeflvalAk.knPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllelledgslekifilFPDPwfKkrhhKrRllqp 97 
                      vl+iGcG+Ge++   A+  +P+  +lGi+ +  +++ +++k +    kNl    g   + l ++l+ +  + +++++   w+  +         
      CCG92283.1  65 KVLDIGCGSGELTAYTAQfVKPKGWVLGIDPSPYRIELANQKRN----KNLSFRIGGS-DDL-SSLPSNFYDVVYLNYVFHWIFDKN-------- 145
                     589*************98469**********9999988877654....4554444433.344.444555555666666666654433........ PP

                     HHHHHHHHHEEEEEEEEEEESHHHHHHHHHHHHHC CS
  Methyltransf_4  98 ellkelarvLkkgGvlelaTDveeyaeemlkvlee 132
                       l+e+ r+Lk+gG l l + ++e + + +k l+e
      CCG92283.1 146 RALEEIFRILKPGGRLGLCSGDKEQHSKNFKILSE 180
                     34566666666666666666666666666666555 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.9e-06    0.0015       3      51 ..      57     105 ..      55     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.9e-06
                      HH---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHH CS
  Methyltr_RsmB-F   3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvae 51 
                      lL+ + +e++lD+ ++ G  T++ a+++k+kg v+ +d +  R++  ++
       CCG92283.1  57 LLKIKAGEKVLDIGCGSGELTAYTAQFVKPKGWVLGIDPSPYRIELANQ 105
                      79999**************************************987554 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.9e-06    0.0015      32      84 ..      54     106 ..      43     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.9e-06
       GCD14  32 iimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekaree 84 
                 +i+ L++k G +v++ G Gsg l+ + a+ v+P+G +  ++    r+e a ++
  CCG92283.1  54 LIHLLKIKAGEKVLDIGCGSGELTAYTAQFVKPKGWVLGIDPSPYRIELANQK 106
                 4678**********************************999999999988775 PP

>> Fibrillarin  Fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.6e-05      0.02      64     107 ..      56      99 ..      51     112 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
                  S--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHH CS
  Fibrillarin  64 kelpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprv 107
                  + l+ik g+kvL +G +sG   ++ +  v+++g v +++ sp  
   CCG92283.1  56 HLLKIKAGEKVLDIGCGSGELTAYTAQFVKPKGWVLGIDPSPYR 99 
                  5678**********************************999864 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0035       2.7      24      48 ..      56      80 ..      49     111 .. 0.85
   2 ?    4.8   0.0     0.022        17      24     120 ..     150     250 ..     127     278 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0035
                HHCCCS-S-EEEEES-TTSHHHHHH CS
        TehB 24 eavkivkpgkvldlgcgqgrnslyl 48
                +  ki    kvld+gcg+g  + y 
  CCG92283.1 56 HLLKIKAGEKVLDIGCGSGELTAYT 80
                556777788**********887775 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.022
                 HHCCCS-S-EEEEES-TTS.HHHHHHHHTT-EEEEEES-HHHHHHH.HHHHHHTT-TTEEEEE.--GGG----S-EEEEEEE.SSGGGS-GGGHHHHHH CS
        TehB  24 eavkivkpgkvldlgcgqg.rnslylsllgydvtawdknensiafl.eeikekenlknistal.ydineaklderydfilst.vvlmfleaeripsiie 118
                 e  +i+kpg  l l  g+  + s  +++l   ++a+     s   +    ++ke+l+n+  ++ + i+++ ++e+ +++ s   v+ flea    + ++
  CCG92283.1 150 EIFRILKPGGRLGLCSGDKeQHSKNFKILSESIQAVLGSTASKDLVvPYHINKEELHNLVIKSgFIIDSLMVEEKTNYVKSPkEVIEFLEASDFGNFLA 248
                 567899999999999997526799999999999999888888776515678999999987654288999**********99526889999887776665 PP

                 HH CS
        TehB 119 nm 120
                  +
  CCG92283.1 249 GI 250
                 55 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.2e-05     0.064      24      73 ..      61     109 ..      49     119 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.2e-05
  Methyltransf_32  24 sgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraek 73 
                      ++ ++v+D+G+G g L+   a+  ++ k  v+gid +  ++e a++ ++k
       CCG92283.1  61 KAGEKVLDIGCGSGELTAYTAQ-FVKPKGWVLGIDPSPYRIELANQKRNK 109
                      56789************99988.556799**********99988765443 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00015      0.12       8      58 ..      53     103 ..      48     126 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00015
                 HHHHHHHHHT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS....H CS
        FtsJ   8 KLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm....a 58 
                 KL++++   k +k g++v+D+g++ G  + + +q +++kg v+++D  p+    a
  CCG92283.1  53 KLIHLL---K-IKAGEKVLDIGCGSGELTAYTAQFVKPKGWVLGIDPSPYrielA 103
                 455543...3.45899********************999*******998855541 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00042      0.33      24      53 ..      61      90 ..      51     112 .. 0.81
   2 ?   -1.4   0.0       2.1   1.7e+03      55      84 ..     172     201 ..     168     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00042
      DUF938 24 kttervLEiasGtGqHAvffApalpnlkwq 53
                k++e+vL+i+ G+G+  ++ A+ +++  w 
  CCG92283.1 61 KAGEKVLDIGCGSGELTAYTAQFVKPKGWV 90
                45678********************99996 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.1
      DUF938  55 sdqdeelresiaawadelalsnlkpPleld 84 
                 s + + l esi+a + ++a++ l  P +++
  CCG92283.1 172 SKNFKILSESIQAVLGSTASKDLVVPYHIN 201
                 5555678899***99999999999999876 PP

>> DRE2_N  Fe-S cluster assembly protein DRE2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00025       0.2      41      97 ..     119     179 ..     118     236 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00025
                 HT-----SSS--SEEEE---..SS-S----HHHHHHHHTT--TT--EE---H............H CS
      DRE2_N  41 aglvsLpastYdlvllltdeeeeeeelliprkliqkivkaLkpgGklkgqdgkake........a 97 
                 ++l sLp++ Yd+v +l+      + +  +++ ++ i++ LkpgG+l   +g  ++        +
  CCG92283.1 119 DDLSSLPSNFYDVV-YLNYV---FHWIFDKNRALEEIFRILKPGGRLGLCSGDKEQhsknfkilS 179
                 67899*******87.56666...2367777999*************9877776555444555552 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0029       2.3      12      37 ..      60      85 ..      52     132 .. 0.74
   2 ?    2.3   0.1      0.19   1.5e+02      99     147 ..     177     227 ..     172     229 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0029
  Methyltransf_18 12 vekgsrvaDiGtDHgylpiylvkegk 37
                     ++ g++v+DiG+  g l++y ++  k
       CCG92283.1 60 IKAGEKVLDIGCGSGELTAYTAQFVK 85
                     78899**************9986443 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.19
  Methyltransf_18  99 ILeea.keklk..kikklilqpnseaeelRkylvengfkiedEelvkeegki 147
                      IL+e+ + +l     k l++  + ++eel + ++++gf i d  +v+e+ ++
       CCG92283.1 177 ILSESiQAVLGstASKDLVVPYHINKEELHNLVIKSGFII-DSLMVEEKTNY 227
                      666663222221134569999999*************965.56777766654 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00045      0.35     110     148 ..      56      97 ..      44     161 .. 0.76
   2 ?   -2.7   0.0       2.7   2.1e+03     209     234 ..     208     233 ..     201     243 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00045
                     GS.--T.T-EEEEET-TTSHHH.HHH.HHCT-SEEEEE---H CS
  Methyltransf_9 110 hlsdlk.grtildvGcgnGyhl.wrm.vgegaklvvGidPse 148
                     hl ++k g ++ld+Gcg+G    +     +    v+GidPs 
      CCG92283.1  56 HLLKIKaGEKVLDIGCGSGELTaYTAqFVKPKGWVLGIDPSP 97 
                     6656553789*********65413321345556899***986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.7
                     EEEEEEEEEEEE-BSS-TT-EE--SS CS
  Methyltransf_9 209 lvkgGelvletlvieGdenavlvPed 234
                     lv +  +++++l++e  +n+v  P++
      CCG92283.1 208 LVIKSGFIIDSLMVEEKTNYVKSPKE 233
                     45555578899999999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2229.08
//
Query:       CCG92284.1  [L=41]
Description: hypothetical protein MFUM_560005 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       175  (0.00976072); expected 358.6 (0.02)
Passed bias filter:                      128  (0.00713927); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 364.06
//
Query:       CCG92285.1  [L=44]
Description: hypothetical protein MFUM_560006 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 323.29
//
Query:       CCG92286.1  [L=42]
Description: hypothetical protein MFUM_560007 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       109  (0.00607954); expected 358.6 (0.02)
Passed bias filter:                      103  (0.00574488); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 345.08
//
Query:       CCG92287.1  [L=306]
Description: Mrr restriction system protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-35  120.2   0.0    6.5e-35  119.6   0.0    1.3  1  Mrr_cat    Restriction endonuclease
    9.5e-22   76.9   0.4      2e-21   75.9   0.0    1.7  2  Mrr_N      Mrr N-terminal domain
    1.5e-10   41.0   0.0    2.9e-10   40.1   0.0    1.4  1  Mrr_cat_2  Restriction endonuclease


Domain annotation for each model (and alignments):
>> Mrr_cat  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.0   1.1e-38   6.5e-35       3     115 .]     160     280 ..     158     280 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 1.1e-38
                 TT-TTCHHHHHHHHHHHHSSS.....EEE---B-TTSSB--EEEETTEEEEEEEEEEE--.T.S-B-HHHHHHHHHHCTTS..SEEEEEESS-B-HHHH CS
     Mrr_cat   3 kmspkeFeklvaellealGyk.....eveltgrsgDggiDliakkdplgserilvqaKry.k.nkvgvkeVqeligalkkrgadkgifvttsdftkaAr 94 
                 + sp+ Fe+l+ +ll a+Gy+       ++ grsgDgg+D+++++d+lg +r++vqaKry k ++vg++eVq+++g+l + ga+kgifvtts+f+++A 
  CCG92287.1 160 QNSPRAFESLIIDLLVAMGYGgsrrnAARQLGRSGDGGVDGVINEDALGLDRVYVQAKRYgKgSSVGRPEVQAFVGSLVGLGANKGIFVTTSTFSSQAV 258
                 669**********************9899*******************************64579********************************** PP

                 HHHHTT.--EEEE-HHHHHHHH CS
     Mrr_cat  95 eeaeel.nkieLldgdeLaell 115
                 ++++++ ++++L+dg++L el+
  CCG92287.1 259 DFVSRIpQRVILIDGKRLTELM 280
                 *****6269**********997 PP

>> Mrr_N  Mrr N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   3.4e-25     2e-21       8      86 ..       1      79 [.       1      80 [. 0.98
   2 ?   -2.8   0.0       1.2     7e+03      21      29 ..     136     144 ..     121     164 .. 0.49

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 3.4e-25
       Mrr_N  8 lLealadgsehrlkeirervaerfglseeeraellpsgkqtrfknrvgWartyLkkagllespkrgvwkiTekGrevlk 86
                +L+++ad +eh+l+e++e ++  f l++ e++ ll s  q++f+n v+War+y+k+agllesp+rg+++iT++G +vl+
  CCG92287.1  1 MLRFAADRQEHSLREAIEGLTVVFWLTQTEQKLLLLSRLQPIFDNHVSWARSYMKQAGLLESPRRGYFRITQRGLDVLA 79
                5999*************************************************************************97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
       Mrr_N  21 keirervae 29 
                 +ei+e++  
  CCG92287.1 136 EEIVEEAYI 144
                 444444332 PP

>> Mrr_cat_2  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   4.8e-14   2.9e-10      25     119 ..     191     285 ..     182     292 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 4.8e-14
   Mrr_cat_2  25 lgkkDtGIDlVake.rkegeywAIQcKfYaedekiqkedidsFlsasgkkkftkrliisTtdkwsknaeealknqkipvkridledLeeseidwsk 119
                   + D G+D V++e +   + + +Q+K+Y + +++ +++++ F+++       k++++ Tt+++s++a + ++   + v +id ++L e++i+ s 
  CCG92287.1 191 GRSGDGGVDGVINEdALGLDRVYVQAKRYGKGSSVGRPEVQAFVGSLVGLGANKGIFV-TTSTFSSQAVDFVSRIPQRVILIDGKRLTELMIEHSV 285
                 4588**********644446677*****************************999999.8888*****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2368.94
//
Query:       CCG92288.1  [L=104]
Description: hypothetical protein MFUM_570003 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0011   18.4   0.0     0.0011   18.4   0.0    1.1  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.2e-08    0.0011     271     308 ..      19      66 ..       4     102 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.2e-08
                 .....TTTCCCCHHHHHHHHHHHHHHHCTSSSEECCS..........C CS
  His_Phos_2 271 ipqEygigpeeklkiGllllnpllkkilndlqrtree..........a 308
                   +Ey  + e+ lki+ +++++llk +++d++r r+e          a
  CCG92288.1  19 AEREYEREAEISLKIAKRICQELLKAVEHDPNRSRDEmlfnagalraA 66 
                 568********************************8866655555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       986  (0.0549947); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 843.40
//
Query:       CCG92289.1  [L=58]
Description: hypothetical protein MFUM_570004 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 463.91
//
Query:       CCG92290.1  [L=44]
Description: hypothetical protein MFUM_570005 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.46
# Mc/sec: 289.62
//
Query:       CCG92291.1  [L=92]
Description: hypothetical protein MFUM_570006 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 685.87
//
Query:       CCG92292.1  [L=587]
Description: hypothetical protein MFUM_570007 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-11   43.7   0.0    6.9e-11   42.4   0.0    1.7  1  SIR2_2    SIR2-like domain
  ------ inclusion threshold ------
      0.078   12.8   0.5       0.41   10.5   0.1    2.3  2  HTH_IclR  IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> SIR2_2  SIR2-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   7.7e-15   6.9e-11       2      98 ..     127     217 ..     126     256 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 7.7e-15
      SIR2_2   2 liiTTNYDdllekaleesgkpvsdaavskedlerelseaesgrtllyklhGslsrpesivltesdYeellarktpiptllkallrskslLflGySfs 98 
                 +i+TTN+D+ll++al e+g++ + + +++e+++   s++ s r l++k+hG+++  ++i  tes+ +e+    ++i++ll+ +l +  l+ +G S +
  CCG92292.1 127 VILTTNFDRLLQTALSERGIEPT-MIYTNEQVSG-FSSLWSVRCLVWKIHGDYR-DSRILNTESELKEYP---EEINRLLDRILGEFGLIVCGWSAK 217
                 79*********************.8899999999.999***************8.8999******97777...89*********999******9965 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   4.6e-05      0.41      33      49 ..     110     126 ..     108     127 .. 0.93
   2 ?   -1.6   0.0      0.26   2.4e+03      23      39 ..     219     235 ..     219     236 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.6e-05
                 HHHHHHHHHHHHTTSEE CS
    HTH_IclR  33 StvhRlLqtLvelGyve 49 
                 S +hR ++ Lv+lGyv+
  CCG92292.1 110 SRAHRAIAELVHLGYVR 126
                 89**************8 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.26
                 HHHHHHTS-HHHHHHHH CS
    HTH_IclR  23 elArrtglpkStvhRlL 39 
                 ++A r +l +St hR++
  CCG92292.1 219 DIALRKALERSTNHRFT 235
                 68888899******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3960.46
//
Query:       CCG92293.1  [L=54]
Description: hypothetical protein MFUM_570008 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 401.46
//
Query:       CCG92294.1  [L=65]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 485.26
//
Query:       CCG92295.1  [L=228]
Description: DNA-binding response regulator, NarL family (REC-HTH domains) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-25   88.7   0.0    5.1e-25   87.8   0.0    1.5  1  Response_reg     Response regulator receiver domain
    1.8e-17   62.6   0.2    3.5e-17   61.7   0.2    1.5  1  GerE             Bacterial regulatory proteins, luxR family
    3.4e-06   26.6   0.2    7.4e-06   25.5   0.1    1.7  2  Sigma70_r4_2     Sigma-70, region 4
     0.0053   16.5   0.0      0.013   15.3   0.0    1.6  1  HTH_23           Homeodomain-like domain
  ------ inclusion threshold ------
      0.017   15.2   0.0      0.049   13.7   0.0    1.7  1  HTH_7            Helix-turn-helix domain of resolvase
      0.021   15.3   0.7      0.088   13.3   0.3    2.1  2  HTH_40           Helix-turn-helix domain
      0.032   14.0   0.5       0.12   12.2   0.1    2.1  2  HTH_38           Helix-turn-helix domain
      0.041   13.9   0.1      0.095   12.7   0.1    1.6  1  Phage_terminase  Phage terminase small subunit
      0.042   12.8   0.1      0.055   12.5   0.1    1.3  1  TnsD             Tn7-like transposition protein D
        0.1   12.0   0.0       0.21   11.0   0.0    1.5  1  HTH_Tnp_ISL3     Helix-turn-helix domain of transposase famil
       0.18   11.9   0.0       0.22   11.5   0.0    1.2  1  DUF3071          Protein of unknown function (DUF3071)


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0   3.1e-28   5.1e-25       1     111 [.      14     125 ..      14     126 .. 0.95

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 3.1e-28
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   v+ivdD+p+vre+++qll  e+++ +++ea+++ + +e++ +  +d+ +++++mpg +Glel++ ir   p++  +++++h+e+ +a++alkaga +
    CCG92295.1  14 VFIVDDHPIVREGIAQLLSkEKNIIVCGEASNAYDGFEKIGKTLPDVAIINLSMPGKNGLELIRDIRFAYPNVSNLVFSMHDEMIYAERALKAGARG 110
                   89*****************555554666********************************************************************* PP

                   EEESSG-HHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkal 111
                   +++K    e+L++a+
    CCG92295.1 111 YVMKTEGVEKLIEAI 125
                   ************997 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.2   2.1e-20   3.5e-17       2      57 .]     161     216 ..     160     216 .. 0.98

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 2.1e-20
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                  Ls+RE e+++l+ +G+   +IAe+l+iS kTV++++s+i +KL++ks  elv++a
  CCG92295.1 161 LLSNREFEIFQLIGKGLGIRQIAEQLHISIKTVESYRSSIKEKLKIKSTEELVHYA 216
                 69****************************************************98 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.1   8.4e+03       6      19 ..      25      38 ..      23      39 .. 0.65
   2 !   25.5   0.1   4.5e-09   7.4e-06      11      54 .]     162     204 ..     159     204 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.1
                  HHHTTS-HHHHHHH CS
  Sigma70_r4_2  6 ealaeLperqreif 19
                  e +a+L  +++ i+
    CCG92295.1 25 EGIAQLLSKEKNII 38
                  55777777777665 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 4.5e-09
                   S-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  11 LperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   L+ r+ eif l+  +gl +++IAe+l+is +tV+s+ s  ++kL
    CCG92295.1 162 LSNREFEIFQLI-GKGLGIRQIAEQLHISIKTVESYRSSIKEKL 204
                   999********7.8**********************98888776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.7e-06     0.013      10      39 ..     169     198 ..     165     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.7e-06
      HTH_23  10 illllaeGlsvreIAreLgvsrrTvyrwlk 39 
                 i +l  +Gl +r+IA++L++s  Tv  +++
  CCG92295.1 169 IFQLIGKGLGIRQIAEQLHISIKTVESYRS 198
                 6666667999***************98876 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     3e-05     0.049      13      38 ..     168     193 ..     161     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-05
                 GGGSSTTTT--STTTSSSS---SSSS CS
       HTH_7  13 rvvkLleeGisiskIAkevnisRsTv 38 
                 ++++L+ +G  i++IA+++ is  Tv
  CCG92295.1 168 EIFQLIGKGLGIRQIAEQLHISIKTV 193
                 799*******************9998 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.1   1.8e+03      36      62 ..     121     148 ..      98     164 .. 0.57
   2 ?   13.3   0.3   5.4e-05     0.088       6      43 ..     170     206 ..     166     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.1
      HTH_40  36 lieegeeidlerl.vseeeekeIeeaie 62 
                 lie+ ++++  ++ vs++  +eI++ i 
  CCG92295.1 121 LIEAIYKVSRGEIaVSPRVSNEIISNIS 148
                 3333333333222233344444444443 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 5.4e-05
      HTH_40   6 lelleeglsieeIAkerglkesTIegHLaelieegeei 43 
                 ++l+ +gl i +IA++ +++ +T+e++  ++ e+ + i
  CCG92295.1 170 FQLIGKGLGIRQIAEQLHISIKTVESYRSSIKEKLK-I 206
                 68999*********************9888777644.4 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.2     2e+03      10      22 ..      24      36 ..      24      37 .. 0.77
   2 ?   12.2   0.1   7.4e-05      0.12      12      37 ..     168     193 ..     162     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.2
      HTH_38 10 ReeIerllaeGls 22
                Re I++ll++ ++
  CCG92295.1 24 REGIAQLLSKEKN 36
                7889999988765 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 7.4e-05
      HTH_38  12 eIerllaeGlslreIArrLgrspsTI 37 
                 eI +l+ +Gl++r+IA +L+ s  T+
  CCG92295.1 168 EIFQLIGKGLGIRQIAEQLHISIKTV 193
                 89*****************9886665 PP

>> Phage_terminase  Phage terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   5.8e-05     0.095      13      45 ..     167     199 ..     163     211 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.8e-05
  Phage_terminase  13 yelykEsggtlklkdIAkvLdvsestvrkWKak 45 
                      +e+++  g+ l +++IA+ L +s +tv  ++  
       CCG92295.1 167 FEIFQLIGKGLGIRQIAEQLHISIKTVESYRSS 199
                      899************************998765 PP

>> TnsD  Tn7-like transposition protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.4e-05     0.055     193     227 ..     171     204 ..     119     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.4e-05
        TnsD 193 eLveeeglslkeiAkelgvdiktVlryakklgllk 227
                 +L+  +gl +++iA++l+++iktV +y ++ ++  
  CCG92295.1 171 QLIG-KGLGIRQIAEQLHISIKTVESYRSSIKEKL 204
                 3444.9*******************9988655443 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00013      0.21      20      46 ..     169     195 ..     166     196 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
  HTH_Tnp_ISL3  20 ilelllesrsvkavArqlgvSwtTVwr 46 
                   i++l  ++  ++++A+ql++S +TV+ 
    CCG92295.1 169 IFQLIGKGLGIRQIAEQLHISIKTVES 195
                   77888888999**************85 PP

>> DUF3071  Protein of unknown function (DUF3071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.22      42      90 ..     149     200 ..      78     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
     DUF3071  42 serqaeaeeess.lrpr..eIQariRaGasveevaeeagvsververyahPv 90 
                 s++q++++++++ l+ r  eI + i +G  + ++ae++++s++ ve y   +
  CCG92295.1 149 SKNQKSINNPTQlLSNRefEIFQLIGKGLGIRQIAEQLHISIKTVESYRSSI 200
                 2224455554443555533799**************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1696.96
//
Query:       CCG92296.1  [L=184]
Description: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-25   87.5   0.0    9.8e-25   87.1   0.0    1.1  1  Flavoprotein     Flavoprotein
  ------ inclusion threshold ------
      0.074   12.3   0.0        0.1   11.9   0.0    1.2  1  Glyco_trans_1_3  Glycosyl transferase family 1


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   1.1e-28   9.8e-25       1     125 [.       1     161 [.       1     173 [. 0.88

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 1.1e-28
                   EEEEEEE-SSCGGGCHHHHHHHHHHTTEEEEEEESCHHHHCCHHG...GS.............TCSSHHHHHHCTTESEEEEEEEEHHHHHHHHTT- CS
  Flavoprotein   1 kkillgiTGsvaaikalellekLkkegievqvvltkaAkkfiske...klklaa.........redpilhielrrwadllviaPasantlakianGi 85 
                   ++i++giTG+++ai+a +ll+ L + ++e++v++++ +k++i  e   +l+  +         ++ ++  ++ + ++d++vi+P+s+ t+++ia+Gi
    CCG92296.1   1 MRIVIGITGASGAIYAQRLLHFLSSTEHEIHVIISNRGKQVIGLElgrNLE--IpkkfglysdNTMEAPFVSGSSRFDAMVIIPCSMGTVGRIAQGI 95 
                   79*****************************************88644333..2447777666555555566677********************** PP

                   -SSHH..............................HHHHHTHCCTTEEEEE.--HHCCTCSTCHHHHHHH CS
  Flavoprotein  86 adnll..............................tlilratakkpiliaPamnpamyenpqtlknlekl 125
                   +++ +                              +++l   +++++li+P + p++y  p t+++l++ 
    CCG92296.1  96 SNSTItrsadvflkerrklilviretplhlihlrnLATL---TEAGALILP-ACPSFYGLPSTIEELVDS 161
                   ****************************99986665555...99*******.**************9986 PP

>> Glyco_trans_1_3  Glycosyl transferase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.1e-05       0.1       1      64 [.       1      64 [.       1      67 [. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.1e-05
  Glyco_trans_1_3  1 arilYgvsGeGaGhasRsrvvlehL.arghevkvvvsgraldvLekef.dvneivglsivyeenrv 64
                     +ri+ g++G     a+ ++ +l+ L   +he++v++s+r+++v+  e+    ei+     y++n +
       CCG92296.1  1 MRIVIGITGA--SGAIYAQRLLHFLsSTEHEIHVIISNRGKQVIGLELgRNLEIPKKFGLYSDNTM 64
                     7999999874..4466677788888455***************98776455666666666777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1329.89
//
Query:       CCG92297.1  [L=290]
Description: 4-hydroxybenzoate polyprenyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-51  174.5  22.5    3.2e-51  174.1  22.5    1.2  1  UbiA      UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.1  22.5   1.8e-55   3.2e-51       2     250 ..      24     267 ..      23     281 .. 0.97

  Alignments for each domain:
  == domain 1  score: 174.1 bits;  conditional E-value: 1.8e-55
        UbiA   2 lipalvglalaaggspdlllllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnpltallgllal 100
                 l++al ++++aa g p+l++l+ +ll++++a++ a+a+N+y+D e D++++rt+nR   s + +++++li++i++l++  + + + ln+l+++l+ +a 
  CCG92297.1  24 LPFALSSMMVAAWGLPSLRTLIGILLCMVAARTMAMAFNRYLDWEYDKQNPRTQNR---SKLATKRQVLILGIISLVIFEISA-ASLNFLCFALSPVAA 118
                 7888999*************************************************...************************.*************** PP

        UbiA 101 llyvvYtglrlKrrtllgtvvggiafglppllgwaavtgsl.sllalllalavflltwaialandlrdregDrkagiktlpvvlGrkaarillalllav 198
                 +l v+Y+  ++Kr++++ + v+g++  l+pl++w+av gs+ s+l++ll+lavf++t++++++++l+d+e Dr+ g+++lp+ +G+ +++ ++all ++
  CCG92297.1 119 FLIVFYS--FTKRFSPYSHAVLGVCLSLAPLGAWVAVKGSFaSMLPFLLSLAVFFWTFGFDIIYALQDVEFDRRFGLYSLPAQFGEGVSLKIAALLHFL 215
                 *******..**********************************************************************************99999999 PP

        UbiA 199 lllallllllalllllylllalllaalallraarlvrrrdakkaakfflfls 250
                 +++ ++++++ + l +++++al+++a +l  ++   r+r+++k++k f+ l+
  CCG92297.1 216 AWIGWAFFGFIGGLRWPYWIALVVVACILGSEHVMSRKREQAKIEKIFFELN 267
                 9999999****************************************96554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2052.71
//
Query:       CCG92298.1  [L=402]
Description: Thiamine biosynthesis enzyme ThiH or related uncharacterized enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-15   57.4   0.1    8.7e-15   55.5   0.0    1.9  2  Radical_SAM     Radical SAM superfamily
  ------ inclusion threshold ------
       0.09   11.9   0.0       0.14   11.3   0.0    1.2  1  N_Asn_amidohyd  Protein N-terminal asparagine amidohydrolase
       0.11   12.8   0.0       0.18   12.0   0.0    1.3  1  Fer4_12         4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   1.5e-18   8.7e-15       3     163 ..      76     245 ..      74     249 .. 0.85
   2 ?   -1.0   0.0      0.34     2e+03     123     149 ..     344     371 ..     328     373 .. 0.81

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 1.5e-18
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC....CCTEEEEEEECSSCHG..... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..... RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekg.vkevilgggepllypdfvellerlakla....vpgiritvetngtlpd..... 90 
                   ++ C l C fCa+++  ++ + + + s++++++e++e++++ g +++  +gg +p l + ++ +l r++k +      +  ++ve+ ++  +     
   CCG92298.1  76 YSNICILSCQFCAFYRR-ENQPGSFTESIDQLVNEAEEAAVN-GaTEVHCVGGLHPKLPYSYYLELVRAIKQRvpqmMMKAFTAVEIRHLAKRiakkp 171
                  5789************6.99*******************655.55**************************998777555556666666665588888 PP

                  .HHHHHHHHHTT-SEEE.EEEBSSSHHHHHHHHT.CTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHH CS
                  .xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  91 .eeklerllelgvdrvs.lgleaaddekvlklmn.rghtfeevlealeklreagikrvvdrivglpGendeeleel 163
                    e+l  l+ +g+d ++  g+e++d+e v++ ++ ++++ ee+le+ + ++++g k ++ +++ ++ e++ ++ ++
   CCG92298.1 172 iVEVLHDLASAGLDALTgGGAEIFDPE-VRRQIClGKESAEEWLEVHRHWHNLGKK-STATMLFGHVETFPQRIDH 245
                  8***********888872579*****9.****************************.7888888888887665554 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.34
                  CTSHHHHHHHHHHHHHHTTSET.EEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  Radical_SAM 123 rghtfeevlealeklreagikr.vvdri 149
                  +g+ +e++++a+e++ +  ++r +++ri
   CCG92298.1 344 PGQPVEALKKAIENAGKIPVRRdTYYRI 371
                  5677899999999999988888888877 PP

>> N_Asn_amidohyd  Protein N-terminal asparagine amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.3e-05      0.14      66     143 ..     102     174 ..      95     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.3e-05
  N_Asn_amidohyd  66 gvaemlksvqelseeskegrlelhlvGGFederglseklslkllealqkqkeeihletlcvlelnttvekgialPiiy 143
                     ++ +++++ +e    + +g  e+h vGG + +  +s  l  +l++a++++  ++ ++ +  +e+ +  ++  + Pi+ 
      CCG92298.1 102 SIDQLVNEAEE---AAVNGATEVHCVGGLHPKLPYSYYL--ELVRAIKQRVPQMMMKAFTAVEIRHLAKRIAKKPIVE 174
                     55555555555...88999*************9999976..89**********************9999999999986 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.1e-05      0.18       7     112 ..      72     177 ..      62     185 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.1e-05
     Fer4_12   7 rlslfvsgCnlsCkgCfn.ketwsfksgkeftkelleeiiedlkkesiegltllGG.EPllpenaeallelvkevkeekpekdiwlytgytleelskk. 102
                 r++ + + C lsC++C   +   ++ s +e  ++l +e+ e  + +  +++  +GG  P l   ++  lelv+ +k++ p+  + ++t + + +l k+ 
  CCG92298.1  72 RYLNYSNICILSCQFCAFyRRENQPGSFTESIDQLVNEAEEA-AVNGATEVHCVGGlHPKL--PYSYYLELVRAIKQRVPQMMMKAFTAVEIRHLAKRi 167
                 66778888*******963033333333333335666665444.367789999****77999..78899************999999***9999999888 PP

     Fer4_12 103 ekeellkeid 112
                 +k+++++ ++
  CCG92298.1 168 AKKPIVEVLH 177
                 8888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2556.11
//
Query:       CCG92299.1  [L=687]
Description: ATP-dependent zinc metalloprotease FtsH 2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-72  241.1   0.5    1.2e-71  240.5   0.5    1.3  1  Peptidase_M41    Peptidase family M41
    3.6e-45  153.6   0.0    1.4e-44  151.7   0.0    2.1  1  AAA              ATPase family associated with various cellul
    2.4e-11   43.3   0.1    5.1e-11   42.2   0.1    1.6  1  AAA_lid_3        AAA+ lid domain
    3.6e-06   26.4   0.0    8.3e-06   25.2   0.0    1.6  1  TIP49            TIP49 P-loop domain
    2.8e-05   24.1   0.0    0.00017   21.6   0.0    2.2  1  AAA_5            AAA domain (dynein-related subfamily)
    9.5e-05   22.2   0.0     0.0014   18.4   0.0    2.7  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00087   19.7   1.0      0.072   13.5   0.1    3.1  3  AAA_16           AAA ATPase domain
     0.0029   17.8   0.0      0.015   15.5   0.0    2.2  2  AAA_33           AAA domain
     0.0033   17.7   0.1       0.16   12.3   0.1    2.7  1  AAA_22           AAA domain
     0.0049   16.3   0.2       0.01   15.2   0.2    1.4  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.005   16.6   0.0      0.011   15.5   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
     0.0067   16.6   0.1      0.042   13.9   0.0    2.3  2  AAA_2            AAA domain (Cdc48 subfamily)
  ------ inclusion threshold ------
       0.04   13.2   0.5       0.17   11.2   0.1    2.1  2  Zeta_toxin       Zeta toxin
      0.054   13.7   0.4       0.59   10.4   0.0    2.7  3  AAA_28           AAA domain
      0.068   13.6   0.0       0.21   12.0   0.0    1.9  1  AAA_17           AAA domain
      0.068   12.7   0.0       0.11   12.0   0.0    1.2  1  LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
      0.074   13.6   0.1       0.27   11.8   0.0    1.9  1  ABC_tran         ABC transporter
      0.079   12.5   0.1       0.23   10.9   0.1    1.8  1  AAA_7            P-loop containing dynein motor region
      0.086   13.3   1.7       0.21   12.0   1.7    1.7  1  FumaraseC_C      Fumarase C C-terminus
      0.093   12.4   0.0        0.3   10.8   0.0    2.0  2  Sigma54_activat  Sigma-54 interaction domain
      0.093   12.2   0.5       0.15   11.5   0.5    1.3  1  Tenui_N          Tenuivirus/Phlebovirus nucleocapsid protein
       0.12   13.0   2.0       0.16   12.6   0.1    2.0  2  Rab5ip           Rab5-interacting protein (Rab5ip)
       0.16   11.4   1.3       0.28   10.6   0.2    1.9  2  PhoH             PhoH-like protein


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.5   0.5   1.5e-74   1.2e-71       2     191 .]     449     637 ..     448     637 .. 0.98

  Alignments for each domain:
  == domain 1  score: 240.5 bits;  conditional E-value: 1.5e-74
                    X--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS-----------TSS--BHHHHHHHHHHHHHHHHHHHHHHHS-BGGGHHHHHHHHHH CS
  Peptidase_M41   2 visekekklvAyHEaGHalvglllkeadpveKvtiiPRgqalGltlslPeedklsltkeellarlavllGGraaEelifgevttGasnDlekatki 97 
                     +se+e+k++AyHEaGHa++ +ll+++dp++KvtiiPRg alG+t++lP +dk++++k+e+l+ l+v++GGr+aEe+++g++++Gas D+++at  
     CCG92299.1 449 AMSEEERKTTAYHEAGHAVLNVLLENTDPIHKVTIIPRGPALGVTMMLPASDKYNARKKEVLDDLCVAMGGRVAEEVFLGDISSGASGDIRQATWY 544
                    589********************************************************************************************* PP

                    HHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE-HHHHHHH CS
  Peptidase_M41  98 arkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreelealaeaLlekEtldaeeieel 191
                    arkmv+e+Gms+klG+v+++++++  vflg+el +++ +se+ta++id+ev+++++ aye+ak+i+ e+++++eala+aLle+Etl+ae++ e+
     CCG92299.1 545 ARKMVCEWGMSEKLGMVHYSDDSS-MVFLGRELGTARGYSEATARAIDQEVQHFIQTAYEKAKRIILEHKDKVEALAQALLEYETLNAEQVIEI 637
                    ********************9888.69***************************************************************9875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   0.0   1.8e-47   1.4e-44       1     131 [.     235     367 ..     235     368 .. 0.97

  Alignments for each domain:
  == domain 1  score: 151.7 bits;  conditional E-value: 1.8e-47
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vl++GppGtGKTllaka+a e++v+f++isgs++++++vg +++++r++f++a+++a p+i+fiDEida++++r    g+ ++e+e+++n+Ll e+dg 
  CCG92299.1 235 VLMVGPPGTGKTLLAKAIAGEADVPFFSISGSDFVEMFVGVGASRVRDMFEQARRHA-PCIVFIDEIDAVGRARgtgLGGGHDEREQTLNALLVEMDGI 332
                 799*****************************************************9.****************9988899****************** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 +++e+ vivi+atnr d ldpallr gRfdr+++++
  CCG92299.1 333 ESQEG-VIVIAATNRKDVLDPALLRpGRFDREVRVN 367
                 **766.**************************9886 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.1   6.6e-14   5.1e-11       3      45 .]     392     434 ..     390     434 .. 0.96

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 6.6e-14
   AAA_lid_3   3 dlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfee 45 
                 dl +LA+ T+G+SGA+la+l++eAal A + g +++++ d+ee
  CCG92299.1 392 DLTALARGTPGFSGAELANLINEAALIAAKKGKESVDQPDLEE 434
                 899***********************************99997 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.1e-08   8.3e-06      25      89 ..     200     269 ..     187     299 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.1e-08
                 XXXXXXXXXXXXXXXXXXXXX....XXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  25 glvGqkkareaagvivelike....kklaGr...avLlaGpsgtGktalaiaiskelgedvpfvalsgsevy 89 
                  + G ++a+e +  +ve++k+    +kl+Gr   +vL++Gp+gtGkt la ai+ e  +dvpf ++sgs++ 
  CCG92299.1 200 DVAGVEEAKEEVQELVEFLKDpkkfQKLGGRipkGVLMVGPPGTGKTLLAKAIAGE--ADVPFFSISGSDFV 269
                 56677888888888888887643336788853338*******************98..57*********875 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.2e-07   0.00017       1     136 [.     234     356 ..     234     357 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.2e-07
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrllle 97 
                 +vl+vGppGtgK+ la+ +a     +++ + ++++ +    +g         s+v   +  +ar   ++i+++DE++ + ++    L    +er+  l+
  CCG92299.1 234 GVLMVGPPGTGKTLLAKAIAGEADVPFFSISGSDFVEMFVGVGA--------SRVRDMFE-QARrhAPCIVFIDEIDAVGRARGTGLGGGHDEREQTLN 323
                 59******************************998764444444........44455555.5555889*********9999999999999999999999 PP

                 -SSSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  98 eggelvkaknddllerfrviatanpldrslnelspalrs 136
                  +  +++  +    e + via++n+ d     l+pal++
  CCG92299.1 324 ALLVEMDGIES--QEGVIVIAATNRKD----VLDPALLR 356
                 88888877664..35599999999999....88888865 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.8e-06    0.0014      34      68 ..     233     267 ..     196     307 .. 0.69
   2 ?   -1.1   0.0       1.8   1.4e+03      15      38 ..     332     355 ..     318     359 .. 0.78
   3 ?   -0.8   0.0       1.5   1.2e+03      29      57 ..     388     416 ..     368     438 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.8e-06
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklkitsgPv 68 
                   vl++GpPG Gkt lak ia e +v + + sg  
  CCG92299.1 233 KGVLMVGPPGTGKTLLAKAIAGEADVPFFSISGSD 267
                 569***********************998888753 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.8
      RuvB_N  15 vkeklkifieaakkreealdhvll 38 
                 ++++  +++ aa +r++ ld  ll
  CCG92299.1 332 IESQEGVIVIAATNRKDVLDPALL 355
                 666777899999999999998887 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.5
      RuvB_N  29 reealdhvllyGpPGlGkttlakiiakel 57 
                  ++a    l  G PG+  + la++i +  
  CCG92299.1 388 SKSADLTALARGTPGFSGAELANLINEAA 416
                 3334345677899***9999999998754 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   9.2e-05     0.072      24      46 ..     226     254 ..     208     273 .. 0.72
   2 ?    2.7   0.0      0.18   1.4e+02     123     148 ..     280     304 ..     275     341 .. 0.66
   3 ?   -0.6   0.0         2   1.5e+03     110     156 ..     581     625 ..     561     636 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.2e-05
      AAA_16  24 p......elvllsGesGvGKsslvrellr 46 
                          vl +G++G+GK+ l+++++ 
  CCG92299.1 226 KlggripKGVLMVGPPGTGKTLLAKAIAG 254
                 444445699***************99985 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.18
      AAA_16 123 lkrllallsrderplvlvlDdlqwad 148
                 +++++++++r + p ++++D+++ + 
  CCG92299.1 280 VRDMFEQARR-HAPCIVFIDEIDAVG 304
                 5667778888.778********9443 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 2
      AAA_16 110 elagaeasrllellkrll.allsrderplvlvlDdlqwadeaslqlla 156
                   + a a+++ +++++++   +++ ++   ++l++ +++++  ++ll+
  CCG92299.1 581 GYSEATARAIDQEVQHFIqTAYEK-AK--RIILEHKDKVEALAQALLE 625
                 445555678888888888444444.44..3666666666666666655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.9e-05     0.015       2      32 ..     235     267 ..     235     348 .. 0.83
   2 ?   -1.4   0.0         3   2.4e+03      18      75 ..     553     610 ..     549     615 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.9e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdt 32 
                 vl+vG+pG+GK+ la+ ++ + +  ++ +s  +
  CCG92299.1 235 VLMVGPPGTGKTLLAKAIAGEADvpFFSISGSD 267
                 79**************99988776655565555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3
      AAA_33  18 rllkklgavllssdtlrrrlfgtdqqsktdytrvldr.lyqilnelarkalsagrnvil 75 
                 ++ +klg+v+ s d+ +  l  ++  + + y++++ r + q ++ +++ a ++++ +il
  CCG92299.1 553 GMSEKLGMVHYSDDSSMVFLG-RELGTARGYSEATARaIDQEVQHFIQTAYEKAKRIIL 610
                 667888999999887333333.3333445555555443666777777777777666665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1    0.0002      0.16       9      30 ..     236     257 ..     232     349 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0002
      AAA_22   9 vvtGesGtGKTtllrrlleqld 30 
                 + +G++GtGKT+l++ ++ ++d
  CCG92299.1 236 LMVGPPGTGKTLLAKAIAGEAD 257
                 569************9998875 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   1.3e-05      0.01      25      43 ..     235     253 ..     230     256 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.3e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +l+vGppG+GKt+lak+++
    CCG92299.1 235 VLMVGPPGTGKTLLAKAIA 253
                   89**************986 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-05     0.011      49      72 ..     234     257 ..     229     302 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgveav 72 
                 +++++Gp+G+GK+ la a++ ea 
  CCG92299.1 234 GVLMVGPPGTGKTLLAKAIAGEAD 257
                 689****************98875 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.7   3.7e+03      21      56 ..     183     218 ..     172     225 .. 0.77
   2 !   13.9   0.0   5.4e-05     0.042       6      83 ..     235     306 ..     232     336 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.7
                 HHHHHHTT-....-EEEEEGGG---.----THHHHHH CS
       AAA_2  21 kalaellfvkkekkliradaselle.eeevehlvsrl 56 
                 k+ a+ll+ + + k++ +d   + e +eev++lv+ l
  CCG92299.1 183 KSRARLLS-GGKTKVTFKDVAGVEEaKEEVQELVEFL 218
                 67788888.8999999999999988778888888655 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5.4e-05
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.....EEEEETGGG---- CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.....ivllDEidKihpk 83 
                 +l++gp g+Gkt+laka+a   +v    ++  +  s++ e   +       +ga+     +e+       iv++DEid + + 
  CCG92299.1 235 VLMVGPPGTGKTLLAKAIAGEADV----PFFSISGSDFVE---MF----VGVGASRVRDMFEQARrhapcIVFIDEIDAVGRA 306
                 6899*******************8....***********9...22....233444444444444444467********99885 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00022      0.17      14      40 ..     230     256 ..     218     282 .. 0.84
   2 ?   -1.0   0.1       1.1   8.9e+02      72     101 ..     582     611 ..     575     625 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdel 40 
                 + Pk +l++G pG GK+ la++++ e 
  CCG92299.1 230 RIPKGVLMVGPPGTGKTLLAKAIAGEA 256
                 679*******************99886 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
  Zeta_toxin  72 aseltqkdaselvekllqeaiengyniive 101
                 +se t +++ + v+  +q a+e+   ii+e
  CCG92299.1 582 YSEATARAIDQEVQHFIQTAYEKAKRIILE 611
                 678888888888888888888888888877 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00075      0.59       2      27 ..     235     261 ..     234     292 .. 0.77
   2 ?   -0.2   0.1       1.4   1.1e+03     120     155 ..     434     470 ..     426     475 .. 0.70
   3 ?   -2.7   0.0       7.6   5.9e+03      29      29 ..     603     603 ..     542     640 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00075
      AAA_28   2 ivitGgestGKTtlleaLa.argypvv 27 
                 + ++G+++tGKT l++a+a + ++p +
  CCG92299.1 235 VLMVGPPGTGKTLLAKAIAgEADVPFF 261
                 6789**************943466655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.4
      AAA_28 120 eidddgeRr..edleereaiderlrealrelgipviiv 155
                 e+ +d++R+  e+   ++  +er   a++e+g+ v+ v
  CCG92299.1 434 EA-RDKVRWgkERRSLAMSEEERKTTAYHEAGHAVLNV 470
                 44.89999722444456677778888999999988876 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 7.6
      AAA_28  29 E 29 
                 E
  CCG92299.1 603 E 603
                 1 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00027      0.21       1      46 [.     238     284 ..     238     348 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00027
                 EE-TTSSHHHHHHHHHHHHTEEEEEH.HHHHHHHHHTTTSHSSHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsa.Gdllreeakrgglakardem 46 
                 +G+PG GK+ +++ ++ + +++++s  G+ + e+    g+++ rd +
  CCG92299.1 238 VGPPGTGKTLLAKAIAGEADVPFFSIsGSDFVEMFVGVGASRVRDMF 284
                 7******************9999987555555666666665555555 PP

>> LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00014      0.11     145     230 ..      32     168 ..      20     169 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
  LPG_synthase_TM 145 vllllalallllavlalllllllrrrlarlarvlkrlarllarfarklasakr......................................... 197
                       +  ++++l+ +++++l+ +  + + +   ++ l+ l+rll + + k+  + r                                         
       CCG92299.1  32 NWKGFLFFLVSILFVVLAYYVSVNQGPGIEQKSLPQLTRLLDQGRVKSLVFIRdtstgqtflegrytrpagptenaeiivpfrtvvdlefnrdl 125
                      67888999999999999999999999999999*********9999999988889**************************************** PP

  LPG_synthase_TM 198 ..............klvlasprrlllafllslliwllealtlylllr 230
                                    k v     +++ + +ls+l +ll++l+ly+l+r
       CCG92299.1 126 kqflaskgfpeidvKVVH----NFWGQAFLSVLPFLLFILALYFLFR 168
                      **********88854444....5**********************97 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00034      0.27      14      36 ..     235     257 ..     231     267 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00034
                 EEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllk 36 
                 v +vG+ G+GK+ L+k++ag+ +
  CCG92299.1 235 VLMVGPPGTGKTLLAKAIAGEAD 257
                 679*****************976 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1    0.0003      0.23      34      58 ..     233     257 ..     227     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0003
       AAA_7  34 kpvllvGptGtGKtviikdllkkld 58 
                 k vl+vGp GtGKt+++k +  + d
  CCG92299.1 233 KGVLMVGPPGTGKTLLAKAIAGEAD 257
                 679*************998776665 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.7   0.00028      0.21      11      54 .]     602     645 ..     602     645 .. 0.98

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00028
                  HHHHHHHHHHHHHHT--HHHHHHHTT-.-HHHHHHHT-HHHHH. CS
  FumaraseC_C  11 YekAakIAkeAlkegktlreavlelgllteeeldelldpekMtg 54 
                  YekA +I  e   +   l +a le + l +e++ e+++  kMt+
   CCG92299.1 602 YEKAKRIILEHKDKVEALAQALLEYETLNAEQVIEIVKTGKMTN 645
                  9*****************************************96 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00038       0.3      22      44 ..     232     254 ..     207     302 .. 0.83
   2 ?   -2.8   0.0       5.8   4.5e+03       3      44 ..     373     414 ..     371     422 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00038
                      SS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat  22 dlsvlitGesGtGKellaraihe 44 
                      +  vl++G  GtGK+lla+ai  
       CCG92299.1 232 PKGVLMVGPPGTGKTLLAKAIAG 254
                      5679****************965 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.8
                      --SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat   3 gesealkelleqikkvaktdlsvlitGesGtGKellaraihe 44 
                      g+++ l+   ++ik   + dl+ l +G  G     la++i e
       CCG92299.1 373 GREQILRVHAQKIKLSKSADLTALARGTPGFSGAELANLINE 414
                      566777777888899999999999999999877777777766 PP

>> Tenui_N  Tenuivirus/Phlebovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5    0.0002      0.15       1      47 [.     593     640 ..     593     645 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
     Tenui_N   1 elqeiieeiskealkyitehkaeivefvne.ieYqgfdaakilkllke 47 
                 e+q++i+   ++a   i ehk+++++++++ +eY+  +a+++++++k 
  CCG92299.1 593 EVQHFIQTAYEKAKRIILEHKDKVEALAQAlLEYETLNAEQVIEIVKT 640
                 67999999999****************98637*************985 PP

>> Rab5ip  Rab5-interacting protein (Rab5ip)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00021      0.16      24      51 ..      32      58 ..      29      93 .. 0.73
   2 ?   -1.0   0.3       3.6   2.8e+03      30      48 ..     152     170 ..     140     199 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00021
      Rab5ip 24 slsGflfylllsllvsllfyalkvkgks 51
                ++ Gflf+l++ l+v+l++y+  v++ +
  CCG92299.1 32 NWKGFLFFLVSILFVVLAYYV-SVNQGP 58
                899****************93.555444 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3.6
      Rab5ip  30 fylllsllvsllfyalkvk 48 
                   l + l++ +l+++++ +
  CCG92299.1 152 SVLPFLLFILALYFLFRQQ 170
                 3333334444444433333 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00036      0.28      22      40 ..     235     253 ..     226     257 .. 0.89
   2 ?   -3.1   0.0       5.8   4.5e+03      62     119 ..     573     630 ..     569     637 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00036
                 EEEE--TTSSTTHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavala 40 
                 v ++Gp GtGKt+la a+a
  CCG92299.1 235 VLMVGPPGTGKTLLAKAIA 253
                 7899***********9988 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.8
                 T----SS---------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B- CS
        PhoH  62 geelGflpgdleekvdpylrplydaLkdllgaekvekllekgkievaplaymRGrTln 119
                 g+elG   g  e   + + + +   +++ ++++k   l +k+k+e +  a +   Tln
  CCG92299.1 573 GRELGTARGYSEATARAIDQEVQHFIQTAYEKAKRIILEHKDKVEALAQALLEYETLN 630
                 5555555554444444444444444444444444444445555665555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      703  (0.0392102); expected 358.6 (0.02)
Passed Vit filter:                       138  (0.00769703); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 4361.25
//
Query:       CCG92300.1  [L=89]
Description: hypothetical protein MFUM_580006 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       153  (0.00853366); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.46
# Mc/sec: 583.04
//
Query:       CCG92301.1  [L=241]
Description: SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-17   64.4   0.0    1.7e-17   64.0   0.0    1.2  1  Methyltransf_21  Methyltransferase FkbM domain
     0.0066   16.2   0.0     0.0096   15.7   0.0    1.3  1  Met_10           Met-10+ like-protein
  ------ inclusion threshold ------
      0.022   14.9   0.0      0.031   14.4   0.0    1.2  1  FtsJ             FtsJ-like methyltransferase
      0.035   13.4   0.0      0.057   12.7   0.0    1.4  1  V_cholerae_RfbT  Vibrio cholerae RfbT protein


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   3.9e-21   1.7e-17       1     172 [.      48     215 ..      48     217 .. 0.74

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 3.9e-21
  Methyltransf_21   1 dvGanigvwdsfanltarlcggggevlaiEPvpnslpkfeklranlltlavgndvglyelivegksg.gkyfpfavgdtngfsts...svlg.. 88 
                      d+Gan+g+++ +a    r+  + + ++a+EP+pn    ++  +a        +d+ ++ ++ +g +   ++fp++v+  + +s+    s l+  
       CCG92301.1  48 DIGANRGQFSLVA----RRYFPNALIYAFEPQPN---PAKVYKAL------FKDDPKVIFFTGGIGPvAGKFPMHVSLRDDSSSLlpiSWLQdn 128
                      9******666666....67999999*********...55555433......2333334444444444555555555555555555554333344 PP

  Methyltransf_21  89 ....gedaryievpvvtldsfleeikksridllkiDvEGaElevLeGaqkglkrcqpnlivvEvhkfk.efetelfdeirqflrecgyr 172
                             +++i v+   ld++l++ + + + llkiDv+G+ElevL+G +++l+ +q  +  vE ++ + + +++l d+i+ fl +  +r
       CCG92301.1 129 ffpgTAKKEEILVEIGPLDYWLKNVDLQSPALLKIDVQGYELEVLRGCENLLESFQYIY--VEASFYElYIGQALADQILYFLYSKHFR 215
                      5555588***********************************************66665..8******99999*********9554444 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.1e-06    0.0096      89     139 ..      31      81 ..      19     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.1e-06
                 HHHHHHHTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHH CS
      Met_10  89 aErerlaklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvky 139
                  E+e+l k +   e++vd+ A  G+f++++ +y  +  ++a + +P+  k 
  CCG92301.1  31 IEHETLLKNIPSCEIIVDIGANRGQFSLVARRYFPNALIYAFEPQPNPAKV 81 
                 69*****************************************99987765 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     7e-06     0.031      21      70 ..      42      99 ..       3     105 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7e-06
                TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS.........HHHTTEEEECS-C CS
        FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgdi 70
                  + +vD+ga  G++s v+ + + + + ++a+  qp+         +  p+v +++g i
  CCG92301.1 42 SCEIIVDIGANRGQFSLVARRYFPN-ALIYAFEPQPNpakvykalfKDDPKVIFFTGGI 99
                33569*****************975.**********98777753333337888777765 PP

>> V_cholerae_RfbT  Vibrio cholerae RfbT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.3e-05     0.057      82     220 ..      45     186 ..      27     228 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
  V_cholerae_RfbT  82 tyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnnplvefhhfgcaigenegenifevyefdnrvsslyfk..kntdiadkvk 173
                        +digan g f  +a r+  +  i a ep  +  + +   +  ++p v f  f   ig   g+  + v   d+  s l +   ++       k
       CCG92301.1  45 IIVDIGANRGQFSLVARRYFPNALIYAFEPQPNPAK-VYKALFKDDPKVIF--FTGGIGPVAGKFPMHVSLRDDSSSLLPISwlQDNFFPGTAK 135
                      569***************************987654.44556667888877..67779999999999999999888776544113344667788 PP

  V_cholerae_RfbT 174 nsqvlvrklssld.....isptnsvvikidaegaeieilnqiyeftekhngi 220
                      + ++lv  +  ld     +      ++kid +g e+e+l    ++ e ++ i
       CCG92301.1 136 KEEILVE-IGPLDywlknVDLQSPALLKIDVQGYELEVLRGCENLLESFQYI 186
                      8888885.44444111113334457899999999999999888877776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1761.91
//
Query:       CCG92302.1  [L=44]
Description: hypothetical protein MFUM_60001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 348.24
//
Query:       CCG92303.1  [L=132]
Description: hypothetical protein MFUM_60002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-12   44.7   0.0    1.3e-11   44.2   0.0    1.2  1  DUF302          Domain of unknown function DUF302
  ------ inclusion threshold ------
      0.083   13.0   0.0       0.11   12.6   0.0    1.2  1  SpoU_methylase  SpoU rRNA Methylase family


Domain annotation for each model (and alignments):
>> DUF302  Domain of unknown function DUF302
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   1.4e-15   1.3e-11       2      58 ..      41      97 ..      40     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1.4e-15
                EHHHHHHCTT-S--S-EEEEEEE-HHHHHHHHCC-GGGGGG-SEEEEEEE.ETTEEEE CS
      DUF302  2 DvqatlkkklgedlrpykilgaCnPklatealqadpeiglllPcrvvVye.kdgkttv 58
                D+++++ k++g++l+p+++++++nP ++te++ ++++++++lP ++++++  d ++ v
  CCG92303.1 41 DHSQAA-KEVGLELPPTVVIVFGNPLAGTELMLQSSTLAIDLPSKLLIRQnLDKTVDV 97
                99999*.*******************************************77777766 PP

>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05      0.11      58     107 ..      16      67 ..      10      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
                     EEEESSHHHHHHHHCCCTEEEEEESTT-SEGCCS..HHHTTEEEEEEBTTTB CS
  SpoU_methylase  58 lkvvdsleealkelkeegfalvatslkgkslsei..dlkekvalvfGnEdkG 107
                     +k  d++ ++ ++l  egf+l+at  +++  +e+  +l+  v++vfGn  +G
      CCG92303.1  16 YKFLDTILRLKSALMTEGFWLFATYDHSQAAKEVglELPPTVVIVFGNPLAG 67 
                     5667788888889999**********9999998766888********96666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1168.17
//
Query:       CCG92304.1  [L=191]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1530.55
//
Query:       CCG92305.1  [L=486]
Description: Lysyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-78  261.9   0.1    9.2e-78  261.5   0.1    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    1.3e-14   53.9   0.0    2.4e-14   53.1   0.0    1.5  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    3.9e-06   26.5   0.7       0.13   11.7   0.0    3.2  3  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.5   0.1   1.5e-81   9.2e-78       2     313 ..     145     480 ..     144     481 .. 0.93

  Alignments for each domain:
  == domain 1  score: 261.5 bits;  conditional E-value: 1.5e-81
                  CCHHHHTHHHHC.CSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEEE CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   2 eelrlknryldl.rtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqia 98 
                  +e r+++ryldl  +++v+kv+  rs+++k +r++l+++gfie+etP++++ +++++a++Fk+ +++    ++ L+++p+lyl++l+v+g+++vf+++
   CCG92305.1 145 VEARYRQRYLDLiMNPEVKKVFFNRSQIIKEIRHFLHQKGFIEVETPMMQTVAGGAAANPFKTFHEALGIPLY-LRIAPELYLKRLLVGGFEKVFELN 241
                  7899***********************************************************9888855888.************************ PP

                  EEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCC.CCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS............ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............ RF
  tRNA-synt_2  99 raFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessak.diefvirrnskdlkkpfkrltykeaieklnei............ 183
                  r+FR+E ++ ++++ EFt++ea++++ ++  + ++leeli ++++ v  + +    ++  ++++ dl+ p+++ +++e ++++ ++            
   CCG92305.1 242 RNFRNEGISRKHNP-EFTMLEAYCAYGDYRSMAKLLEELIVHVAQCVFGTLQFpASKHLAENKMVDLTPPWPQKPFREVLNEAIGKdwfaldeaekrk 338
                  **************.********************************666543145666677779*****************7777888888888888 PP

                  ..............-SS--HHHHHHHHHHS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCHHSSSG CS
                  ..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 184 ..............gkdldkaderalvkkeknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeeleeklkskgldeeae 267
                                + d+ +     lv+     p+fvt+ P  l p++++++ +  + ++ ++l++ng El+ G+++++dp +++e+l+++  + e++
   CCG92305.1 339 vamefeieveeeftESDIARHLFEKLVEARTIGPLFVTELPTDLVPLAKQNKVK-AEFVDVFELIVNGQELAPGYSELNDPIVQRERLEKQAGE-EKQ 434
                  8888888888888877888888888888***********************999.8**********************************9988.9** PP

                  GGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 268 ekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  + ++++l aleyG+pp gG+g+G+dRl+mll+g+esIrdvi+FP l
   CCG92305.1 435 KIDEEFLLALEYGMPPAGGIGMGIDRLTMLLTGQESIRDVILFPLL 480
                  ********************************************75 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0     4e-18   2.4e-14       1      76 []      51     128 ..      51     128 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 4e-18
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET....HHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr....eeatklaenlkeGdvvrvtGrvkrrpggelelkveeiell 76 
                      V++aGr+ si  r++gk +f+  +D ++++q+++++    +ea++++++l++Gd+++v+G+ + ++++e ++ v++++ll
       CCG92305.1  51 VRIAGRILSI--RDMGKSFFAHMQDQSAKMQIYANPqsvgQEAFNQLKHLDIGDIIGVEGECFLTKTKEKTVRVKSWQLL 128
                      89********..****************************************************************9986 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.038   2.3e+02      20      44 ..     170     194 ..     160     201 .. 0.89
   2 !    9.9   0.0   7.9e-05      0.47     103     154 ..     236     289 ..     233     297 .. 0.76
   3 !   11.7   0.0   2.2e-05      0.13     211     234 ..     451     474 ..     436     478 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.038
                   HHHHHHHHHHHHCTTCEESSTTSEE CS
  tRNA-synt_2d  20 tkvleeikeiflelgfeevegpeve 44 
                   +++++ei++++++ gf eve p ++
    CCG92305.1 170 SQIIKEIRHFLHQKGFIEVETPMMQ 194
                   5899****************99876 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 7.9e-05
                   EEEEEEEEEBSST-SSSB-SEEEEEEEEEE.ETT--HHHHH.HHHHHHHHHHCT CS
  tRNA-synt_2d 103 kiisigrvfRrdavDathlaeFhqveglvv.denvsladlk.gvleellkklfg 154
                   k++ ++r fR++ + ++h +eF+ +e  ++ ++  s+a+l+  ++ ++++ +fg
    CCG92305.1 236 KVFELNRNFRNEGISRKHNPEFTMLEAYCAyGDYRSMAKLLeELIVHVAQCVFG 289
                   8999**********************9876244556666541455566666665 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 2.2e-05
                   EEEEEEEHHHHHHHHHT-SSGHHH CS
  tRNA-synt_2d 211 gfafGlGveRlamlkygieDiRel 234
                   + + G+G++Rl+ml +g e iR++
    CCG92305.1 451 AGGIGMGIDRLTMLLTGQESIRDV 474
                   5678******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3540.19
//
Query:       CCG92306.1  [L=120]
Description: 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-29  100.8   0.0    5.3e-29  100.7   0.0    1.0  1  PTPS      6-pyruvoyl tetrahydropterin synthase


Domain annotation for each model (and alignments):
>> PTPS  6-pyruvoyl tetrahydropterin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0   2.9e-33   5.3e-29       2     123 .]       5     120 .]       4     120 .] 0.95

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 2.9e-33
                 EEEEEEEEEEE--TTTT..GGGGSTEEEEEEEEEEEEEC-STCTTBSS-HHHHHHHHHHHHHCTTTEECCCC-CCHHCCS.--HHHHHHHHHHHHHHHH CS
        PTPS   2 iskefeFdaaHrlrkhe..gkcrnlHGHnykvevtvegeeldetgmvvdfgelkealkeileelDhkflnaddpeleellspTaEnlaklifeelkerl 98 
                 +sk+f+F+aa  l++ +  +kcr++HGH++k++v v+ge+++ +g+++d ++++ea+  ++e+lDh++ln d++ l++   pT En+a +++++l+++l
  CCG92306.1   5 LSKDFDFEAAQALPSFPegHKCRRVHGHSFKLTVAVRGEVDPIRGILYDHAKISEAVIPLIEQLDHSYLN-DIEGLQN---PTIENMAGWFWKKLQDKL 99 
                 6899**********55556***************************************************.9999996...****************** PP

                 GCCCGCEEEEEEEEETTEEEEEEEX CS
        PTPS  99 qekevklskvrvwEtpnswaeyree 123
                     + l++++v Et++  + yr+e
  CCG92306.1 100 ----PGLYEITVQETARTRCIYRGE 120
                 ....9*****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 919.89
//
Query:       CCG92307.1  [L=310]
Description: Aldo/keto reductase family enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-38  132.8   0.0      3e-38  131.7   0.0    1.5  1  Aldo_ket_red     Aldo/keto reductase family
  ------ inclusion threshold ------
        0.3   11.2   0.9        5.2    7.2   0.2    2.8  3  Glyco_transf_8C  Glycosyl transferase family 8 C-terminal


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   0.0   3.4e-42     3e-38       1     291 [.      15     293 ..      15     295 .. 0.87

  Alignments for each domain:
  == domain 1  score: 131.7 bits;  conditional E-value: 3.4e-42
                   .EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE...--SSSTTSSSS-HHHHHHHHHHHH CS
  Aldo_ket_red   1 elglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv...dlrdaeiksglskeniresleesl 94 
                   +lg+Gt+ +g +  ++ + + ell  al++Gin++DtA+ Y   qseel+G+ +++   +r ++i++tK+   +   +e  + +ske i +s+++sl
    CCG92307.1  15 RLGIGTAEIGLE-HMQTAAVSELLLFALDHGINLIDTARGY--EQSEELIGKTVAH---RRRDFILVTKCgygEVEGKEFLPPWSKEKIAASVDQSL 105
                   59********97.****************************..*************...***********86666667777899************* PP

                   HHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBST CS
  Aldo_ket_red  95 krLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysp 191
                   k+L+td++D+ llH +  +  +  e+l+al   +++Gkir iG S+ + e + ++   +  +i +++++ n+ ++ + e++l  +k+k+v++ a  p
    CCG92307.1 106 KKLRTDHIDIMLLHTCSKEILEQGEALEALIVAKEKGKIRFIGYSGDNEEAIYAL---SLPEIDVLEMSLNVTDQKNLEKVLLEAKAKNVGVLAKRP 199
                   ******************999999999999999********************99...9999***********999999999999999********* PP

                   TGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG-.---HHHHH CS
  Aldo_ket_red 192 lggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalel.klseeeva 287
                   l++   +   + ++++ ++  ++     +r+++++++ e++       +++    +l+++ls p v +vi+g++++e+l +n++ l+  +l e+ ++
    CCG92307.1 200 LANCPWKDPTELSPSYAKEYGAEYR---KRFEQMQLKPEDFG----IEKKDWPKFFLSFVLSFPEVHSVIVGTTKLEHLFENIETLQEgPLEESILQ 289
                   ***6666666656555544444332...44555555555553....456678899******************************977788888777 PP

                   HHHH CS
  Aldo_ket_red 288 elde 291
                   +++e
    CCG92307.1 290 KVKE 293
                   6665 PP

>> Glyco_transf_8C  Glycosyl transferase family 8 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.13   1.2e+03      30      48 ..     118     136 ..     115     138 .. 0.86
   2 ?    7.2   0.2   0.00058       5.2      12      42 ..     201     231 ..     198     233 .. 0.92
   3 ?   -0.1   0.1      0.11     1e+03       5      16 ..     293     306 ..     290     308 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.13
  Glyco_transf_8C  30 mkkkaKhlfkqgkyisgii 48 
                      ++ ++K  + qg+ ++++i
       CCG92307.1 118 LHTCSKEILEQGEALEALI 136
                      689*********9998776 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00058
  Glyco_transf_8C  12 eaSpWkdvpllppktakemkkkaKhlfkqgk 42 
                      ++ pWkd   l+p  ake+   ++  f q +
       CCG92307.1 201 ANCPWKDPTELSPSYAKEYGAEYRKRFEQMQ 231
                      578************************9976 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.11
  Glyco_transf_8C   5 kyFkkaqea..SpW 16 
                      + F+ka ++  SpW
       CCG92307.1 293 EAFRKAEQNsaSPW 306
                      67899987622577 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2274.30
//
Query:       CCG92308.1  [L=99]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-21   73.9   0.5    1.2e-20   73.4   0.5    1.2  1  DUF167    Uncharacterised ACR, YggU family COG1872


Domain annotation for each model (and alignments):
>> DUF167  Uncharacterised ACR, YggU family COG1872
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.5   6.6e-25   1.2e-20       3      76 ..       5      74 ..       3      75 .. 0.93

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 6.6e-25
                EEEEES---SSS----...--TTTT-------TTIIIIIHHHHHHHHHHHHHS...SEEEE-S-GGGSEEEEEE CS
      DUF167  3 ilavrvkPgakkdaigleedaegrealkvrvaappvdGkANkalikfLakalgvpksdveivsGeksreKvvri 76
                +l ++v  +akk++++      ++ea+k++++appv+GkAN+ l++fL++ l+vpk  ++i++Geksr K++ i
  CCG92308.1  5 RLLIKVLANAKKTELV----GMHGEAIKIKLSAPPVEGKANELLLSFLSDRLEVPKGLLRIEKGEKSRLKTIVI 74
                788*************....455677**********************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 734.45
//
Query:       CCG92309.1  [L=284]
Description: PDZ domain containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.025   14.4   0.0    1.5  1  PDZ_6     PDZ domain
       0.14   12.5   0.0        0.2   12.0   0.0    1.3  1  PDZ_2     PDZ domain
       0.18   12.2   0.0       0.31   11.4   0.0    1.4  1  PDZ       PDZ domain


Domain annotation for each model (and alignments):
>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   4.2e-06     0.025       1      32 [.     189     220 ..     189     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.2e-06
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveg 32 
                 +V a + g+ +++ G++ GD+il++N++ ++g
  CCG92309.1 189 FVVALEVGGKGYEYGMKSGDQILAINDVGING 220
                 6888899*******************997754 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.4e-05       0.2      15      60 ..     187     233 ..     162     260 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.4e-05
                 -EEEEEE-TTSGGGGT.--TT-EEEEETTB--.SSHHHHHHHHHTS- CS
       PDZ_2  15 gvlvvsVkeggPaakaglkagDvilkvdgkkv.ksledlislllkkk 60 
                 ++ vv  + gg   + g+k+gD+il+++++ +   l+d+ s ++k k
  CCG92309.1 187 KIFVVALEVGGKGYEYGMKSGDQILAINDVGInGGLSDFLSIYRKEK 233
                 56666667777777889**************9434566666665555 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.1e-05      0.31      25      59 ..     185     219 ..     167     241 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.1e-05
                 SSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETT CS
         PDZ  25 dkgifvsevlpggaaeadglkvGDkIlsvNgvdve 59 
                 d  ifv  ++ gg     g k GD+Il++N+v ++
  CCG92309.1 185 DSKIFVVALEVGGKGYEYGMKSGDQILAINDVGIN 219
                 5578888888898888889************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2141.27
//
Query:       CCG92310.1  [L=248]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-05   24.4   2.3      0.032   14.8   0.5    3.1  1  FlgT_C           Flagellar assembly protein T, C-terminal dom
     0.0002   19.7  24.6    0.00027   19.3  24.6    1.2  1  FPP              Filament-like plant protein, long coiled-coi
    0.00066   19.7  17.7    0.00068   19.6  15.0    1.9  2  DUF1043          Protein of unknown function (DUF1043)
     0.0031   16.8   8.9     0.0031   16.8   8.9    2.0  2  HemX             HemX, putative uroporphyrinogen-III C-methyl
     0.0037   16.2   7.4     0.0043   16.0   7.4    1.1  1  LMBR1            LMBR1-like membrane protein
     0.0049   16.5  16.8     0.0068   16.0  14.6    1.9  2  Exonuc_VII_L     Exonuclease VII, large subunit
     0.0077   15.6  15.9     0.0099   15.2  15.9    1.1  1  ALIX_LYPXL_bnd   ALIX V-shaped domain binding to HIV
  ------ inclusion threshold ------
      0.013   15.6   4.5      0.013   15.6   4.5    2.3  2  BRE1             BRE1 E3 ubiquitin ligase
      0.024   13.5  30.6      0.055   12.3  30.6    1.6  1  Spc7             Spc7 kinetochore protein
      0.066   13.3  15.0       0.71    9.9   9.1    2.5  3  DUF1664          Protein of unknown function (DUF1664)
      0.068   13.1   8.1        1.3    8.9   8.0    2.6  1  SLATT_1          SMODS and SLOG-associating 2TM effector doma
       0.07   13.0   5.7       0.28   11.1   0.0    3.3  2  YajC             Preprotein translocase subunit
      0.079   10.9   6.9        0.1   10.5   6.9    1.2  1  Prominin         Prominin
       0.13   12.0   6.8      0.081   12.6   2.0    2.1  2  LUD_dom          LUD domain
       0.14   12.1   3.6        0.2   11.7   3.6    1.2  1  Neur_chan_memb   Neurotransmitter-gated ion-channel transmemb
       0.16   12.4  23.2       0.28   11.6  23.2    1.4  1  Fez1             Fez1
       0.16   10.1  25.0       0.51    8.5  25.0    1.6  1  EzrA             Septation ring formation regulator, EzrA
       0.21   10.9   8.7       0.33   10.3   8.7    1.3  1  Aminopep         Putative aminopeptidase
       0.27   11.3   0.1       0.27   11.3   0.1    2.7  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
       0.33   10.8   0.2       0.33   10.8   0.2    3.5  3  LapA_dom         Lipopolysaccharide assembly protein A domain
       0.35   10.9  27.8          6    6.8  27.8    2.1  1  Rootletin        Ciliary rootlet component, centrosome cohesi
       0.49   10.6  31.2        5.2    7.3  31.2    2.0  1  ATG16            Autophagy protein 16 (ATG16)
       0.49   10.4  21.3       0.44   10.5  12.8    2.2  2  Laminin_II       Laminin Domain II
       0.53   10.8  39.4       0.57   10.7  16.2    2.1  2  APG6_N           Apg6 coiled-coil region
       0.59    9.8  22.5       0.84    9.3  22.5    1.2  1  CAF-1_p150       Chromatin assembly factor 1 complex p150 sub
       0.59    9.5  30.7        3.9    6.8  30.6    1.8  1  Tropomyosin      Tropomyosin
       0.67    8.6  22.2        2.1    7.0  21.9    1.7  1  HAUS5            HAUS augmin-like complex subunit 5
       0.88    9.7  19.5        3.5    7.8  17.2    2.2  2  RasGAP_C         RasGAP C-terminus
          1    9.8  19.9       0.79   10.2   0.7    3.0  3  Snapin_Pallidin  Snapin/Pallidin
        1.1    7.5  27.3        1.4    7.2  27.3    1.1  1  MAD              Mitotic checkpoint protein
        1.2    9.5  20.5      0.046   14.0   9.9    2.4  2  KxDL             Uncharacterized conserved protein
        1.2    8.2  26.6       0.63    9.1  15.3    2.0  2  Atg14            Vacuolar sorting 38 and autophagy-related su
        1.3    8.2  25.6       0.25   10.6   5.3    2.1  2  DUF3450          Protein of unknown function (DUF3450)
        1.5    8.8  13.4      0.093   12.7   2.2    2.4  2  DUF4446          Protein of unknown function (DUF4446)
        1.7    9.0  13.1       0.67   10.2   0.3    2.9  2  WXG100           Proteins of 100 residues with WXG
          2    8.5  12.2        3.3    7.9  12.2    1.3  1  GIDA_assoc       GidA associated domain
          2    8.0  22.1       0.94    9.1  18.7    2.0  2  Syntaxin         Syntaxin
        2.2    8.6  13.1         10    6.4   0.9    3.2  3  DUF948           Bacterial protein of unknown function (DUF94
        2.5    7.4  34.3        1.9    7.8  14.0    2.0  2  GAS              Growth-arrest specific micro-tubule binding
        2.8    7.5   5.4         13    5.4   5.2    2.1  1  SLATT_6          SMODS and SLOG-associating 2TM effector doma
        2.9    7.6  28.1         70    3.1  28.2    2.1  1  DUF4201          Domain of unknown function (DUF4201)
        2.9    8.3  33.5        2.3    8.6  23.4    2.4  2  DUF4200          Domain of unknown function (DUF4200)
        3.2    8.0  28.0        1.8    8.8   5.5    2.8  2  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
        3.3    7.3  23.7        1.6    8.2   8.3    2.6  2  Fzo_mitofusin    fzo-like conserved region
        3.4    7.7  34.2        7.2    6.7  19.6    2.2  2  DHR10            Designed helical repeat protein 10 domain
        3.5    8.1   7.5        3.4    8.1   4.1    2.2  3  DUF3037          Protein of unknown function (DUF3037)
        3.9    7.2  21.0        3.6    7.4   2.9    2.0  2  SKA1             Spindle and kinetochore-associated protein 1
        4.5    7.3  36.9        5.2    7.2  15.1    2.3  2  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
        4.7    7.1   8.1       0.76    9.7   1.1    2.1  2  PepSY_TM_like_2  Putative PepSY_TM-like
        5.2    6.2  22.0         82    2.3  22.0    2.1  1  TMPIT            TMPIT-like protein
        5.5    6.9  19.1        2.8    7.8   7.6    2.7  3  Sec34            Sec34-like family
        6.2    6.4   9.3         24    4.5   9.2    2.0  1  FlgH             Flagellar L-ring protein
        6.9    6.2   9.9        6.2    6.3   8.6    1.5  1  DUF2347          Uncharacterized conserved protein (DUF2347)
        7.3    4.6  29.3         15    3.6  29.3    1.4  1  HOOK             HOOK protein
          8    5.8  27.5         16    4.9  26.7    1.7  1  Golgin_A5        Golgin subfamily A member 5
        8.7    6.1  34.9         19    4.9  35.0    1.4  1  ERM              Ezrin/radixin/moesin family
        9.1    6.5  22.1         22    5.3  22.1    1.5  1  zf-C4H2          Zinc finger-containing protein
        9.9    6.8  30.8         41    4.9  19.7    2.5  2  HIP1_clath_bdg   Clathrin-binding domain of Huntingtin-intera


Domain annotation for each model (and alignments):
>> FlgT_C  Flagellar assembly protein T, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.5    0.0001     0.032       4      74 ..     189     245 ..     187     248 .] 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 0.0001
      FlgT_C   4 vvinlGrkhGvkkGDklqlvrsasfidqlgetraelnkseatltVeqVyeetavltlvdensllniQvnDv 74 
                 vv+n+G+k G+ ++ +l ++r ++f+               ++++++  + tav+++v +++  niQ++D 
  CCG92310.1 189 VVLNIGEKDGLVENGELEVFRNKQFLG--------------KIKIVSTEPSTAVADIVMDSLKGNIQPGDD 245
                 788888888888888888888888875..............567888888888888888888888888885 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3  24.6   8.7e-07   0.00027     698     809 ..      30     142 ..      24     173 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8.7e-07
         FPP 698 eelksekenlevelksatenleslkaqlqesEqllaelkseLeslkeskslaetqlkcmkesyesletrateleaelnelkqkieaLeveLeeekkshe 796
                 ++ k+e      elk+ +e+le+ k+ l+ + + l+e+k+eL++ +e  ++++++lk+ +    +l+++++   +  n+ k++++aL+++Leeekk+ +
  CCG92310.1  30 NQFKAEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEEKKANQ 128
                 577888888899*************************************************************************************** PP

         FPP 797 eleakckel.qeql 809
                 e+  k+++l +e+l
  CCG92310.1 129 EASEKIENLvKEKL 142
                 *****999834444 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6  15.0   2.2e-06   0.00068       1      99 [.      11     125 ..      11     140 .. 0.75
   2 ?    1.0   2.1       1.3   3.9e+02      19      63 ..     116     160 ..     109     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.2e-06
     DUF1043   1 aliglvvGiiiGalilrltnsklkkqkklekelekakaeleeqkqele...dHfaqsaelLetlaedyqkLyqhlaksseeL............lp.el 83 
                 +++g+vv ++ G+li++  n+  ++ +++ +el+k+ ++lee k  le   +H+++ +  L++  e+ qkL + l++++++L            +  + 
  CCG92310.1  11 VFVGVVVSAVFGLLIVKQKNQFKAEYARTSEELKKTSEQLEESKVLLErtsKHLEEVKAELAQERERAQKLDNDLKETQSQLadlqqksessssMAnQH 109
                 689*******************9*********************88864448******************************55555444444322122 PP

     DUF1043  84 eeqelfqqkkleekka 99 
                 + +  ++++klee+k+
  CCG92310.1 110 KSELDALTAKLEEEKK 125
                 2222223333333333 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 1.3
     DUF1043  19 tnsklkkqkklekelekakaeleeqkqeledHfaqsaelLetlae 63 
                 +++kl+++kk ++e  ++ ++l + k  led +a+  + L+++++
  CCG92310.1 116 LTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNELNKFKQ 160
                 456777777777777777777777777777777777777777666 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   8.9     1e-05    0.0031      10     106 ..       7     102 ..       3     109 .. 0.61
   2 ?    4.3   8.1     0.068        21      28      94 ..      97     160 ..      95     171 .. 0.51

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1e-05
        HemX  10 lallvalavgag...lyylgqqqvqeltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlskvsgaerk 105
                 l ++v ++v ++   +  + +q+ ++ +   ae + + ++l+++++q+e++k   ++++++l++ + +l++ +++ ++l+++l+e+q+ql++++ ++++
  CCG92310.1   7 LSVVVFVGVVVSavfGLLIVKQK-NQFK---AEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSES 101
                 55566666443322222222332.2344...45555555555555555558888888888888888888888888888888888888888888777655 PP

        HemX 106 d 106
                 +
  CCG92310.1 102 S 102
                 4 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.068
        HemX  28 qqvqeltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqq 94 
                 q++++ ++++++++++l al ++l++   ek+ +qe +e++++l ++  ale +++ l+++l++ +q
  CCG92310.1  97 QKSESSSSMANQHKSELDALTAKLEE---EKKANQEASEKIENLVKEKLALEDSIARLTNELNKFKQ 160
                 33333333335555555555555555...66666665555555555555555555555555555444 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   7.4   1.4e-05    0.0043     175     331 ..       9     172 ..       1     193 [. 0.62

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.4e-05
       LMBR1 175 lilllGyGlvelPrslwr.eiksdldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklks......ne 266
                 ++++ G+   ++ ++l   + k + + e+ +++ e++k ++++ee++  le + k++++++ ++ ++ ++ + l++ lk++ +++a+  ++        
  CCG92310.1   9 VVVFVGVVVSAV-FGLLIvKQKNQFKAEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKsessssMA 106
                 556667766666.55544444555555666666666777777777777777777777777777766665556666666666666666644455455455 PP

       LMBR1 267 nkteeslaklekqlikalqkrertekqwkrllekalelediiknksskekefksses.srrgefak 331
                 n+ +++l  l+ +l ++ + +++ +++ ++l+++ l+led i   +++ ++fk+ ++   r+  ++
  CCG92310.1 107 NQHKSELDALTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNELNKFKQASPaVARAVSMR 172
                 556667777777777778888888888888888888888888888888888877665544444444 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0  14.6   2.2e-05    0.0068     137     261 ..      24     163 ..      19     181 .. 0.56
   2 ?    0.2   0.0       1.4   4.5e+02      13      34 ..     213     234 ..     209     241 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.2e-05
  Exonuc_VII_L 137 lvvpdkaeleeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkq.............lkkkrerleelker 220
                   l+v++k++++++ ++++++l+k  + +lee+k  le+++++l++ ++ l+++r+r ++l ++l++++++              +++++++l+ l+++
    CCG92310.1  24 LIVKQKNQFKAEYARTSEELKKTSE-QLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLadlqqksessssmANQHKSELDALTAK 119
                   6788899999999999998888775.56666677777777777777777777777777666666633322331111222233233333333333333 PP

  Exonuc_VII_L 221 lkekleekkerlkklkerle.......lleekkerleeleeklealsp 261
                   l    ee+k+  ++ +e++e        le++  rl++  +k +++sp
    CCG92310.1 120 L----EEEKKANQEASEKIEnlvkeklALEDSIARLTNELNKFKQASP 163
                   3....2222222222222222222333466666666666666666655 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.4
  Exonuc_VII_L  13 lpkrigvvtsptgaairDilrt 34 
                   +  +i +v+ + + a+ Di+ +
    CCG92310.1 213 FLGKIKIVSTEPSTAVADIVMD 234
                   6789***************975 PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2  15.9   3.2e-05    0.0099       9     138 ..      33     168 ..      31     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.2e-05
  ALIX_LYPXL_bnd   9 kaeevrsqgglqrlekllqdlqelkerneeiLdeieklLdeEesedeklrakygt........rWtrqpSseltaelraelqkyreileeAsesD 95 
                     kae+ r ++ l++  ++l++ + l+er  + L+e++++L++E++  +kl ++ ++        + ++++Ss+ + + ++el+ +   lee ++++
      CCG92310.1  33 KAEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKEtqsqladlQQKSESSSSMANQHKSELDALTAKLEEEKKAN 127
                     789999999**********************************9999999999987777876666666899999********************* PP

  ALIX_LYPXL_bnd  96 kivrqklqenkedlelLsgpeeeleaalpssssaaasesveeq 138
                     +  ++k+++  ++  +L+ + + l + l + ++  as++v ++
      CCG92310.1 128 QEASEKIENLVKEKLALEDSIARLTNELNKFKQ--ASPAVARA 168
                     ********9888888888888888888773322..34455554 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6  22.2       9.7     3e+03       6      94 ..      37     125 ..      32     126 .. 0.89
   2 ?   15.6   4.5   4.1e-05     0.013       3      54 ..     118     169 ..     116     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 9.7
        BRE1   6 vklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLkelekefvrklkelek 94 
                  + +++ +++seql++ +  l++  + +  ++ae a++++    ++++ +  + +l  L+++ + ss++ +q k    ++++kl+e +k
  CCG92310.1  37 ARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEEKK 125
                 6789999*********************************9999999999999999999999999999999999988888888888766 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 4.1e-05
        BRE1   3 kELvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrsk 54 
                 + L++ +ka +e+se+++++vke  +le+ ++rl++e +k +q   a+ r+ 
  CCG92310.1 118 AKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNELNKFKQASPAVARAV 169
                 67888899**********************************9988888876 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3  30.6   0.00018     0.055     143     281 ..      31     161 ..      24     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00018
        Spc7 143 gleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelke 241
                 + + +++   e+ ++ ++q ee + ll++++++ +e+++el++++e+a++l++    +L+e++++la+l+++ e+ + + ++ +++l++l++k+ee k+
  CCG92310.1  31 QFKAEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDN----DLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEEKK 125
                 55556666667777777788888888889999999999999999998888666....899999999999999999999999999999999999999988 PP

        Spc7 242 qkseleeeiaeaervleeckgwsesevsrlkeevkaleel 281
                   +e+ e+i++    l ++k   e+ + rl++e++++++ 
  CCG92310.1 126 ANQEASEKIEN----LVKEKLALEDSIARLTNELNKFKQA 161
                 88888888883....3345677777788888887777765 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   9.1    0.0023      0.71      38     122 ..      31     118 ..      19     120 .. 0.84
   2 ?    7.1   2.3     0.017       5.2      50     107 ..      95     152 ..      93     171 .. 0.69
   3 ?    6.1   0.2     0.036        11      54      91 ..     134     171 ..     124     201 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0023
     DUF1664  38 slsdavesvskqleqvseslaatkrhL...ssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                  ++   ++ s++l++ se+l++ k  L   s+++++v ++l +  e +++++++++e +++l+++++++es +++ ++ +s+l+ + +
  CCG92310.1  31 QFKAEYARTSEELKKTSEQLEESKVLLertSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTA 118
                 455667888999999999999999766333688999***********************************99999999999988765 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.017
     DUF1664  50 leqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvk 107
                 l+q ses ++  ++ +s++d + +kl+e k++ +e +e+++++ ++  ++++ +  + 
  CCG92310.1  95 LQQKSESSSSMANQHKSELDALTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLT 152
                 6666777777777777888888888888888888888888777666555555555544 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.036
     DUF1664  54 seslaatkrhLssridrvdkkldeqkeiskeikeevte 91 
                  e+l + k  L++ i+r+ ++l++ k++s ++++ v+ 
  CCG92310.1 134 IENLVKEKLALEDSIARLTNELNKFKQASPAVARAVSM 171
                 46778889999999999999999999999999998853 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   8.0    0.0043       1.3      54      99 ..       9      63 ..       3     150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0043
     SLATT_1 54 lvgvlaavaaallaWlelkqyeelaaaYslaaeeLeiiraalea.........ea 99
                +v ++ +v++a++  l +kq ++ +a+Y+++ eeL++ +++le+         ++
  CCG92310.1  9 VVVFVGVVVSAVFGLLIVKQKNQFKAEYARTSEELKKTSEQLEEskvllertsKH 63
                56778899***********************************876666433333 PP

>> YajC  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.21        66       5      37 ..      11      45 ..       7      48 .. 0.53
   2 ?   11.1   0.0    0.0009      0.28      41      67 ..     169     197 ..     159     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.21
        YajC  5 plv..lifvifyfllirpqqkkqk.ehkemlasLkk 37
                ++v  ++ ++f  lli +q+ + k e + + ++Lkk
  CCG92310.1 11 VFVgvVVSAVFG-LLIVKQKNQFKaEYARTSEELKK 45
                344214446664.55566666655155566666776 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0009
        YajC  41 VvtigGivGkvvkvddde..vtveigesa 67 
                 V +  Gi+Gkvv+v+ +   v++ ige++
  CCG92310.1 169 VSMRTGIHGKVVSVNRNWnfVVLNIGEKD 197
                 77889**********65346999998776 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   6.9   0.00033       0.1     178     281 ..      46     153 ..       4     185 .. 0.40

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00033
    Prominin 178 vkrgledlrtflkdvpqhidhv...lvqnyeelekhvsddLddagkhlgldladtlesn...vlpaLaelerllenlkeakeqLeqvnklekeLrksgs 270
                   ++le+ + +l+ +++h+++v   l q+ +e  +++ +dL++++++l  dl++++es+    ++  +el++l  +l+e k++ ++ ++  ++L k++ 
  CCG92310.1  46 TSEQLEESKVLLERTSKHLEEVkaeLAQE-RERAQKLDNDLKETQSQLA-DLQQKSESSssmANQHKSELDALTAKLEEEKKANQEASEKIENLVKEKL 142
                 11222233334444444444431111111.1222234444444444332.2333322220001111122222222222222222222222222222222 PP

    Prominin 271 qLrdglrgvkr 281
                  L+d++    +
  CCG92310.1 143 ALEDSIARLTN 153
                 22222222222 PP

>> LUD_dom  LUD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.0   0.00026     0.081       9      83 ..      28     100 ..      26     120 .. 0.85
   2 ?    2.1   0.2      0.46   1.4e+02      21      84 ..     127     214 ..     122     241 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00026
     LUD_dom   9 eangaevyyaktaeealelilellkeksvvseggstdlgeiglapalhsgreevldlfeekltreareelrekfl 83 
                 ++n++++ ya+t ee+ ++  e l+e +v +e  s  l+e+    a ++ r+++ld + +++ + +  +l +k++
  CCG92310.1  28 QKNQFKAEYARTSEEL-KKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKET-QSQLADLQQKSE 100
                 79**********6665.5567777888899**************************999999.666666666665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.46
     LUD_dom  21 aeealelilellkeksv.....................vseggstdlgeigl.apalhsgreevldlfeekl..treareelrekflt 84 
                  +ea e+i++l+kek +                     v+ ++s++ g  g   ++ ++ ++ vl++ e+++   + + e +r+k + 
  CCG92310.1 127 NQEASEKIENLVKEKLAledsiarltnelnkfkqaspaVARAVSMRTGIHGKvVSVNRNWNFVVLNIGEKDGlvENGELEVFRNKQFL 214
                 489999******9996667767777777777777777766666666654444355555555555555555555444445555555555 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.6   0.00066       0.2      76     181 ..      24     162 ..       2     193 .. 0.36

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00066
                     HHHHHHHHH-S-S---HHHHHHHTTHHHHHHC--------------..........................----------------------- CS
  Neur_chan_memb  76 vfVlnvhhrsprthtmpawvrkvfldklprllfmkrpsevkdnekkl.........................ssgasseaeelilskskseskka 145
                      +V + ++ + +  +++++ +k   +  +   +++r+s++ ++ k++                         +++++s++    ++ks+ +  +a
      CCG92310.1  24 LIVKQKNQFKAEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAElaqereraqkldndlketqsqladlQQKSESSSSMANQHKSELDALTA 118
                     22222222222223334444444444444444444444444444444444444444444333333333332222222222222233333333334 PP

                     ---------------SS---TTGGG--.............---- CS
  Neur_chan_memb 146 klseeqgsekastckckckegeeaspstqlsk........eels 181
                     kl+ee+++++++ +k+++  +e+ + +++  +        +++s
      CCG92310.1 119 KLEEEKKANQEASEKIENLVKEKLALEDSIARltnelnkfKQAS 162
                     44444444444444444333333333322222333333333333 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  23.2   0.00091      0.28      36     150 ..      32     161 ..      24     173 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00091
        Fez1  36 lkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa..............lesdea 120
                  ka+   ++++l+++ e+++e +  le  ++ le++++el++++++a+ l++ +++++++l++l+++ +++s+ +++++              ++ +  
  CCG92310.1  32 FKAEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKseldaltakleeekKANQ-- 128
                 3444445555666666666666666666666666666666666666666666666666666666555444443333333344444432211112222.. PP

        Fez1 121 kaqrqe........aeeleelkreverlraeLkeerqk 150
                      e         +e  +l+ +++rl +eL++ +q+
  CCG92310.1 129 -----EasekienlVKEKLALEDSIARLTNELNKFKQA 161
                 .....133344445555666777778888888777776 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  25.0    0.0016      0.51     303     427 ..      38     159 ..      26     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0016
                 HHTTTSSSSSHHHHT--HHHHTTGGG-TTTS-GGGSSTTTSTTHHHHHHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHHH CS
        EzrA 303 eveknlkelkeklehlekqnkelkeeldrlkqsYeLseeeleklrelekelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeeiles 401
                 +  ++lk+++e+le+ +  ++ +++ l+++k +  L  +e e++++l+++lke ++++ +l++k e+++    + ++el+ l+ klee ++  +e +e+
  CCG92310.1  38 RTSEELKKTSEQLEESKVLLERTSKHLEEVKAE--L-AQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEEKKANQEASEK 133
                 345566666677777777777777777777764..6.67889999999999999999999999999999999999999999999999999999999999 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EzrA 402 lkslrkdEkrAreqldeikkelkeik 427
                 +++l k+ +  +++++++ +el++ k
  CCG92310.1 134 IENLVKEKLALEDSIARLTNELNKFK 159
                 99999999999999999999999987 PP

>> Aminopep  Putative aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   8.7    0.0011      0.33     190     271 ..      61     142 ..      22     174 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0011
    Aminopep 190 aegsaaareeaaaekarreqfralvkatrerLealYasdlsaeekraakaeileelraeyaelkaeelkglagydewvakpl 271
                 ++  ++ ++e a+e++r +++ + +k+t+++L++l +++ s+++++++ +++l++l a+ +e+k+++ +++++ +++v+++l
  CCG92310.1  61 SKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEEKKANQEASEKIENLVKEKL 142
                 2233344899999999*************************************************99999999999999875 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00086      0.27      69     112 ..       9      50 ..       2      51 .. 0.61
   2 ?    1.5   1.2      0.97     3e+02      16      35 ..      61      80 ..      55      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00086
  Phage_holin_3_6  69 ali.vaavllvlagvlalvglkklkkakplpertieelkedvaal 112
                       ++ v++v+ ++ g+l++  ++++k+     +rt eelk++ + l
       CCG92310.1   9 VVVfVGVVVSAVFGLLIVKQKNQFKA---EYARTSEELKKTSEQL 50 
                      33334455555555555555555555...689********98876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.97
  Phage_holin_3_6 16 rteleLakaElkeeakrags 35
                      ++le +kaEl++e++ra +
       CCG92310.1 61 SKHLEEVKAELAQERERAQK 80
                     578999**********9976 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2    0.0011      0.33      19      64 .]       7      51 ..       6      51 .. 0.68
   2 ?   -0.8   2.4       4.6   1.4e+03      44      63 ..      73      92 ..      61     100 .. 0.70
   3 ?    2.2   0.4      0.53   1.6e+02      41      62 ..     105     126 ..     101     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0011
    LapA_dom 19 LsllllvafgiGallgwllslw...sylrlrrelrrlkkkikklekele 64
                Ls    v++++G+++  +++l+   ++ + + e  r  +++kk  ++le
  CCG92310.1  7 LS----VVVFVGVVVSAVFGLLivkQKNQFKAEYARTSEELKKTSEQLE 51
                44....4555555555555553111666899999999*******99986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 4.6
    LapA_dom 44 rlrrelrrlkkkikklekel 63
                + r ++++l++ +k+ + +l
  CCG92310.1 73 QERERAQKLDNDLKETQSQL 92
                55666666666666666665 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.53
    LapA_dom  41 sylrlrrelrrlkkkikkleke 62 
                 +  ++++el +l+ k+++ +k 
  CCG92310.1 105 MANQHKSELDALTAKLEEEKKA 126
                 4559999999999999998775 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  27.8     0.019         6      18     124 ..      64     161 ..      25     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.019
   Rootletin  18 vskLqaKvlqYkkrcseleqrllektselektkltlllssareleeeesadleealakLeeErqrseklaqvnslLreqleearqaneaLtedlqkltk 116
                 +++ +a + q ++r ++l++ l+e++s+l   ++  +++s ++++++++++l+ ++akLeeE++ +++         e++e+  ++  aL++++ +lt+
  CCG92310.1  64 LEEVKAELAQERERAQKLDNDLKETQSQLADLQQ--KSESSSSMANQHKSELDALTAKLEEEKKANQE-------ASEKIENLVKEKLALEDSIARLTN 153
                 45567779999***********997666655554..5567889*********************9999.......88999******************* PP

   Rootletin 117 dwerlree 124
                 ++++ ++ 
  CCG92310.1 154 ELNKFKQA 161
                 **999875 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  31.2     0.017       5.2      16     151 ..      32     160 ..      27     169 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.017
       ATG16  16 afaeliqaynrLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkl 114
                   ae+ ++  +L + +++le+ +  le+ +++ ++        k ++a+++++++k ++++++++++la l++  + +    +++++ l +l+++l++ 
  CCG92310.1  32 FKAEYARTSEELKKTSEQLEESKVLLERTSKHLEE-------VKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEE 123
                 44455566666666667777776666555444443.......22233333333446778899999999999999999999999999************* PP

       ATG16 115 eeklkedeerlaeleaeraaletklkdreeelrekek 151
                 ++  +e +e++++l +e+ ale+ ++++++el+  ++
  CCG92310.1 124 KKANQEASEKIENLVKEKLALEDSIARLTNELNKFKQ 160
                 ****************************999987655 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   2.0     0.056        17       8      48 ..      39      79 ..      32      83 .. 0.69
   2 ?   10.5  12.8    0.0014      0.44       3      83 ..      76     156 ..      74     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.056
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  8 anetakevleqlaplsqnlentkeklseinrsveetnekvk 48
                 +e +k++ eql++ ++ le+t++ l+e+++++++  e ++
  CCG92310.1 39 TSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQ 79
                56677777788888888888888888888777776665555 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0014
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHH CS
  Laminin_II   3 elaaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqlee 83 
                 e a++ ++ +ke+++qla+l+q+ e  ++ +++ +++++  ++k+++ +ka ++A++++ +L k+   L+d + +l +  +
  CCG92310.1  76 ERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNELN 156
                 678889999*****************************************************9998888888887765544 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  21.5      0.22        69      47     113 ..      34     100 ..      25     110 .. 0.42
   2 ?   10.7  16.2    0.0018      0.57      33      97 ..      93     161 ..      89     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.22
      APG6_N  47 eeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlell 113
                  e +++ eel+k++++ ee    L+++ k+ ee++aela+ +e +++l+++ ++  ++  +lq + +
  CCG92310.1  34 AEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSE 100
                 3444444444444444444444444444444444444444444444444444444444444333322 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0018
      APG6_N  33 kklkkekkeeek....qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeee 97 
                 + l+++++++++    +++el++l  +le+ +k+ +e+ e++++l ke+ +le+ +a l++el++ ++ 
  CCG92310.1  93 ADLQQKSESSSSmanqHKSELDALTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNELNKFKQA 161
                 5555555554446677************************************************99885 PP

>> CAF-1_p150  Chromatin assembly factor 1 complex p150 subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  22.5    0.0027      0.84      14     136 ..      28     157 ..      24     175 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0027
  CAF-1_p150  14 eklklekekerlrkkl.klerekeekkrlkeekkeekerakeearrkkeeek..ekkekerrekkekdekekaeklrlkeekrkeklealeakleekrk 109
                 +k + + e  r  ++l k +++ ee k l e++ ++ e +k e  +++e  +  +++ ke +  +  d ++k+e      +++k+ l+al aklee +k
  CCG92310.1  28 QKNQFKAEYARTSEELkKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQklDNDLKETQ-SQLADLQQKSESSSSMANQHKSELDALTAKLEEEKK 125
                 34444444444444441445556777778888888888888886655544430033334433.4557999999*9999********************* PP

  CAF-1_p150 110 keeekrlkeee...krikaek..aeitrflqk 136
                  ++e   k e+   +++  e   a +t  l k
  CCG92310.1 126 ANQEASEKIENlvkEKLALEDsiARLTNELNK 157
                 99998777776554333333211444444444 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  30.6     0.013       3.9       5     117 ..      38     154 ..      34     157 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.013
  Tropomyosin   5 qveeeldeaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaekaades....erarKvlEnrelkdeekleele 98 
                   + eel +++e+le+ k  le++ k+ e+ +aE a+ + r q+l+++l++t+++l++ ++k e  +  a+++    + +   lE+ + ++ e  e+ e
   CCG92310.1  38 RTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHkselDALTAKLEEEKKANQEASEKIE 135
                  57899999999999999999999999999999999999999999999999999999999998876666655533337778889999999999999999 PP

  Tropomyosin  99 aqlkeakeiaeeadrkyeE 117
                  + +ke   ++++ +r  +E
   CCG92310.1 136 NLVKEKLALEDSIARLTNE 154
                  9999988888877766666 PP

>> HAUS5  HAUS augmin-like complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  21.9    0.0068       2.1     286     418 ..      30     160 ..      26     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0068
       HAUS5 286 lrykyesnrllDvssdessdLpsvkqLlerqkehvqqflnkaaearkesqkLlkrLqglkdeveleslgagetsqndsllrqvleleleaaglkaslnt 384
                  ++k e  r  +  + +s++L++ k Ller ++h + + +++a+ r++ qkL ++L+ ++++  l+ l+++++s+++   ++  el++ +a+l+ + ++
  CCG92310.1  30 NQFKAEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQ--LADLQQKSESSSSMANQHKSELDALTAKLEEEKKA 126
                 56777777788887889999*************************************66665..44555455455555555567888888999999999 PP

       HAUS5 385 LrsevqrLeklaaerkealrsLqkkwkkIldFra 418
                  ++  +++e+l++e+  +++s      +   F++
  CCG92310.1 127 NQEASEKIENLVKEKLALEDSIARLTNELNKFKQ 160
                 9999999999999999999888887777777766 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.9     0.087        27     103     133 ..      28      58 ..      21      62 .. 0.77
   2 ?    7.8  17.2     0.011       3.5       2      94 ..      37     135 ..      36     161 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.087
    RasGAP_C 103 krelkksgklpkfgsykysakqLeekgVLle 133
                 ++++ k++  ++   +k + +qLee +VLle
  CCG92310.1  28 QKNQFKAEYARTSEELKKTSEQLEESKVLLE 58 
                 455555666677788999***********98 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.011
    RasGAP_C   2 velkkkalenlkeLeelgvi.srennyqellneIakdirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienvleqlkkkkgk...... 93 
                 ++  +++++  ++Lee++v+ +r  +    l+e+++++++ +++ +k  ++l+ +++ l++L++k++  +s  ++ k+ ++   ++l+++k++      
  CCG92310.1  37 ARTSEELKKTSEQLEESKVLlERTSK---HLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEEKKAnqease 132
                 56667788888999999999455544...49********************************************************888743333333 PP

    RasGAP_C  94 ..l 94 
                    
  CCG92310.1 133 kiE 135
                 330 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   3.6      0.32        99      34      89 ..      34      81 ..      25      83 .. 0.53
   2 ?    5.8  12.3      0.06        19       6      89 ..      55     137 ..      53     137 .. 0.88
   3 ?   10.2   0.7    0.0026      0.79      16      51 ..     128     163 ..     120     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.32
  Snapin_Pallidin 34 eqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlqklkkRaekL 89
                     ++  r +e+Lk+++        ++l+e +  L +  k++++++  l + ++Ra+kL
       CCG92310.1 34 AEYARTSEELKKTS--------EQLEESKVLLERTSKHLEEVKAELAQERERAQKL 81
                     34444455555444........5555555555555555555555555555555555 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.06
  Snapin_Pallidin   6 gllellepkldeldeklkelrqsQeeLleqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlqklkkRaekL 89 
                       lle  +  l+e++++l++ r+  ++L ++l++ +++L++l++  e ++ + +++++  L ++  ++++ ++  q++ +++e+L
       CCG92310.1  55 VLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSE-SSSSMANQHKSELDALTAKLEEEKKANQEASEKIENL 137
                      58888999***********************************999.6667778899999999999999888888888888887 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0026
  Snapin_Pallidin  16 deldeklkelrqsQeeLleqldrlnekLkeleeaqe 51 
                      +e  ek+++l ++  +L +++ rl+++L+++++a +
       CCG92310.1 128 QEASEKIENLVKEKLALEDSIARLTNELNKFKQASP 163
                      67889***************************9988 PP

>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  27.3    0.0045       1.4       6     129 ..      31     157 ..      26     173 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0045
         MAD   6 eskaaleqlknelkqkelehkrarielekkasal...krqleeesdrnqelqkrikllekreeekeealreqiElarlkkknlealnkkekekesklae 101
                 + ka++   ++elk+ + + ++ ++ le+ ++ l   k +l++e++r q+l++++k+ + + +  +++++    +a + k  l+al+ k++e ++ ++e
  CCG92310.1  31 QFKAEYARTSEELKKTSEQLEESKVLLERTSKHLeevKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEEKKANQE 129
                 556777777777777777777777777777654422256788888888888888888888887777777777777777777777777777777777777 PP

         MAD 102 arevisalknelaelkrqiekqelelse 129
                 a+e i++l +e  +l+ +i +   el++
  CCG92310.1 130 ASEKIENLVKEKLALEDSIARLTNELNK 157
                 8887777777777777777777666665 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   9.9   0.00015     0.046      19      79 ..      37     100 ..      30     103 .. 0.89
   2 ?    0.8   2.8       1.9   5.9e+02      14      49 ..     104     140 ..      99     164 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 0.00015
        KxDL  19 aqtsgrlnkknreLle...lnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkakla 79 
                 a ts +l+k++++L+e   l + ++++l++++a+++q  + ++++ +dL+ +++++  l++k +
  CCG92310.1  37 ARTSEELKKTSEQLEEskvLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSE 100
                 689***********9844466788899**********************************976 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 1.9
        KxDL  14 ilalQaqt.sgrlnkknreLlelnalsqerlaklrar 49 
                 ++a Q++  ++ l +k +e ++ n++++e+ ++l ++
  CCG92310.1 104 SMANQHKSeLDALTAKLEEEKKANQEASEKIENLVKE 140
                 4444544434555555555555555555555555444 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  15.3     0.002      0.63      70     153 ..      30     112 ..      26     115 .. 0.89
   2 ?    2.5   9.5       0.2        62      69     132 ..      99     162 ..      91     172 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.002
       Atg14  70 eelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiaklqdaikrieqklsslssk 153
                 ++ k++ a+++e+l++ +++l++ k  +e ++k+l++ +++l++ r+++++l n l+e + +q+a lq++   ++ + ++ +s+
  CCG92310.1  30 NQFKAEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQ-SQLADLQQKSESSSSMANQHKSE 112
                 7889999*************************************************9975.89999999999988888877766 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.2
       Atg14  69 leelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkq 132
                  e+  s   + +++l  l +kl++ kk+++e+++k++ l ++      +++ l+nel++ ++++
  CCG92310.1  99 SESSSSMANQHKSELDALTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNELNKFKQAS 162
                 4444455556677899999999999999999999999985554468888899999999888765 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  12.6      0.14        44      37     101 ..      31      95 ..      24     102 .. 0.65
   2 ?   10.6   5.3   0.00082      0.25      12      66 ..     107     161 ..      99     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.14
     DUF3450  37 kkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpl 101
                 + + ++++ ++el++  ++l+e +  le   ++le++ a++ qe+++ ++  ++++e++++l  l
  CCG92310.1  31 QFKAEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADL 95 
                 33445556666666667777777777777777777777777777777777777777777777654 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00082
     DUF3450  12 gal.aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevy 66 
                 +   +++ld++ ++ e+  +a +++++ki++l +ek  l++ + +l++el++ +  
  CCG92310.1 107 N-QhKSELDALTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNELNKFKQA 161
                 2.25899******************************************9987765 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.2    0.0003     0.093       4      81 ..       9      91 ..       6      95 .. 0.77
   2 ?    1.0   4.2       1.2   3.7e+02      49      79 ..     108     138 ..      88     171 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0003
     DUF4446  4 lvlavlvvillillivllvklkklkkkykklmk..gkdgkslee...llkekleeveelkeeseelekeieeleeklkkslqk 81
                +v++v vv+  ++ ++++ + +++k +y +  +  +k+ ++lee   ll+++ +++ee+k+e ++ +++ ++l+++lk++ ++
  CCG92310.1  9 VVVFVGVVVSAVFGLLIVKQKNQFKAEYARTSEelKKTSEQLEEskvLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQ 91
                566777777777778888888888888887777444566667663336999999***********************998765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 1.2
     DUF4446  49 ekleeveelkeeseelekeieeleeklkksl 79 
                 ++ +e+++l ++ ee +k  +e +ek+++ +
  CCG92310.1 108 QHKSELDALTAKLEEEKKANQEASEKIENLV 138
                 3333333333333333333333333332222 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3    0.0022      0.67      46      83 ..      29      66 ..      27      69 .. 0.93
   2 ?    1.4   7.1       1.3   3.9e+02       6      54 ..      85     135 ..      67     161 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0022
                CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100 46 adafqaefeewkqaaqklvdaLeeisealkqaanafed 83
                +++f+ae+++  ++++k  ++Lee    l+++++ +e+
  CCG92310.1 29 KNQFKAEYARTSEELKKTSEQLEESKVLLERTSKHLEE 66
                689*******************************9997 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCT..HHHCHHHHHHHH CS
      WXG100   6 peelrqaaarfqkqaeeledelqrlkaevdalqsgWs..Gaaadafqaefe 54 
                  +e ++  a++q+++e+ +++ ++ k+e+dal+++ +   +a ++  + +e
  CCG92310.1  85 LKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEeeKKANQEASEKIE 135
                 455566666777777777777777777777776665533444444444444 PP

>> GIDA_assoc  GidA associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  12.2     0.011       3.3      62     201 ..      39     175 ..      22     182 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHH.HHHT....EHHHHCTTST--HHHHHCCHHHHHHHSCHHHHHHHHHHHCHHHHHHHHHHCHHHHHHH CS
  GIDA_assoc  62 ryekfeekkeeieelkellkstklkseewkkllekkeskklslaellkrpevkledlleelpeeeeeseeeleqveieakYegyiekqeeeieklkkee 160
                 + e++++++e++ee k ll++t+ + ee+k++l+++++++++l + lk+++ +l+dl+++ +++++  ++  ++ e++a  +++ e+++++ e+ +k e
  CCG92310.1  39 TSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQ--HKSELDALTAKLEEEKKANQEASEKIE 135
                 3455566666666666666666666666665566666666677778999999999995555444333333..344444444444444444444444444 PP

                 TSB--TTS-CCC.STT--CHHHHHHHHH--SCHHHHTTSTTS CS
  GIDA_assoc 161 nlkipedldYsk.ikgLskearekLkkvrPetlgqAsrisGv 201
                 nl ++e+l  ++ i+ L++e  +k+k++ P+   ++s  +G+
  CCG92310.1 136 NL-VKEKLALEDsIARLTNEL-NKFKQASPAVARAVSMRTGI 175
                 44.666677666578887774.67888888766666555555 PP

>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  18.7     0.003      0.94       7     121 ..      28     141 ..      24     145 .. 0.94
   2 ?    1.3   0.2      0.75   2.3e+02       3      33 ..     136     166 ..     128     193 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.003
    Syntaxin   7 eveeikkeiekleeevkklkkqneesktstraksvklkkrmesdikeikkraesvkarLeaLdksnkenekksgegsavdRirksqtaaLrkklkevmt 105
                 + ++ k e++  +ee+kk ++q eesk   ++ s+   ++++++ ++ ++ra+++ + L++ + + ++ ++ks+++s+++ + ks  +aL+ kl+e  +
  CCG92310.1  28 QKNQFKAEYARTSEELKKTSEQLEESKVLLERTSK-HLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEEKK 125
                 667889999999**********************9.88999********************************************************** PP

    Syntaxin 106 eynelrekireeyker 121
                   +e+ eki++ +ke+
  CCG92310.1 126 ANQEASEKIENLVKEK 141
                 ********99998886 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.75
    Syntaxin   3 effkeveeikkeiekleeevkklkkqneesk 33 
                 ++ ke  +++++i+ l++e++k+k++   + 
  CCG92310.1 136 NLVKEKLALEDSIARLTNELNKFKQASPAVA 166
                 3333334444445555555555544443333 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.9     0.033        10       9      68 ..      14      72 ..       6      76 .. 0.64
   2 ?    5.5   5.3     0.066        20      22      79 ..      65     122 ..      55     138 .. 0.85
   3 ?    2.8   0.4      0.47   1.4e+02      26      69 ..     125     181 ..     119     187 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.033
      DUF948  9 AFvvLviflivvllklkktldeaaatieelekqvdpilkevedllakvnelledvnekle 68
                 +vv ++f   ++++ ++   e a+t eel+k   + l+e++ ll+ + + le+v+ +l+
  CCG92310.1 14 GVVVSAVFGLLIVKQKNQFKAEYARTSEELKKTS-EQLEESKVLLERTSKHLEEVKAELA 72
                3455555555555555666667777777776544.4457788888888888888888776 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.066
      DUF948  22 lklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavad 79 
                  ++k  l + +++ ++l ++++++  +++dl +k++   +  n++  ++d+lt+++++
  CCG92310.1  65 EEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEE 122
                 556677778889999999*******************9999999999***99998765 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.47
      DUF948  26 ktldeaaatieelekqvdpilkevedllakvne.............lledvneklek 69 
                 k  +ea++ ie+l k+  ++ + +++l+++ n+             +  ++++k+ +
  CCG92310.1 125 KANQEASEKIENLVKEKLALEDSIARLTNELNKfkqaspavaravsMRTGIHGKVVS 181
                 566788888888888888888888888888888544444444444455555555555 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  18.6     0.015       4.5      47     117 ..      27     101 ..      25     108 .. 0.73
   2 ?    7.8  14.0    0.0063       1.9      33     103 ..      90     160 ..      87     166 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.015
         GAS  47 kelseisqenkrlkepLkkaeeevee....Lrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfek 117
                 k+ ++ ++e  r +e+Lkk  e++ee    L++  k+ e+ k++l++ ++r ++l++ lk+++ +   l+q+ e+
  CCG92310.1  27 KQKNQFKAEYARTSEELKKTSEQLEEskvlLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSES 101
                 555666667777777777766666664444666777778889999999999999999999999999999999876 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0063
         GAS  33 eeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkd 103
                 +++++l++k e+ +   +++++e   l+ +L++ ++ ++e  ++++n  k+k +l+ + arl++  +++k+
  CCG92310.1  90 SQLADLQQKSESSSSMANQHKSELDALTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNELNKFKQ 160
                 799*******************************************************9999988777776 PP

>> SLATT_6  SMODS and SLOG-associating 2TM effector domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   5.2     0.041        13      60     123 ..      11      81 ..       1     144 [. 0.73

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.041
     SLATT_6  60 lsalliiigiialy.isayekdkekYekagkeltklfneLkelysevks......seeedlskleaelkei 123
                 + + +++ ++ +l+ +++ ++ k +Y+++ +el k +++L+e     +       + +++l++++++ +++
  CCG92310.1  11 VFVGVVVSAVFGLLiVKQKNQFKAEYARTSEELKKTSEQLEESKVLLERtskhleEVKAELAQERERAQKL 81 
                 4455677778886515778888******************9743333321001212233344444444444 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1  28.2      0.23        70      17     135 ..      38     162 ..      27     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.23
     DUF4201  17 slkhqlakiqeklek....keelgegLtli..dFeqlqienqalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlak 109
                 ++ + l+k++e+le+    +e+ + +L ++  +  q +   q+l++ + e + +L  l++k+ +++ + ++ k  l++l+++l+e kk  +e  e+++ 
  CCG92310.1  38 RTSEELKKTSEQLEEskvlLERTSKHLEEVkaELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEEKKANQEASEKIEN 136
                 44444444444444422227888888888722455666789********************************************************** PP

     DUF4201 110 lrkelykvklerdklrkqneklkqqg 135
                 l ke   ++   ++l ++ +k+kq +
  CCG92310.1 137 LVKEKLALEDSIARLTNELNKFKQAS 162
                 ***********************987 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  18.1      0.21        64      24      98 ..      31     101 ..      24     111 .. 0.67
   2 ?    8.6  23.4    0.0076       2.3       6     107 ..      62     159 ..      59     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.21
     DUF4200  24 rleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiek 98 
                 + + + ++  eel+k+ ++lee+ + +++  k+ ++ +a    + ++er++ ++ ++++k+ ++++++l+++ e 
  CCG92310.1  31 QFKAEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKA----ELAQERERAQKLDNDLKETQSQLADLQQKSES 101
                 445556667788888888888888777777777665554....45667777777777888888888888777665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0076
     DUF4200   6 remfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekle 104
                 + ++ev+ +l++ +e  q+l + lk+ + +l + +q+ e +      + ++++++      k eee+k+++e  ++i++l +e  +l+  i++l ++l+
  CCG92310.1  62 KHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSS----SMANQHKSELDALTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNELN 156
                 678899999999999999999999999999999888888888....55555666666666789999999999999999999999999999999999999 PP

     DUF4200 105 eyk 107
                 ++k
  CCG92310.1 157 KFK 159
                 987 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5  23.1       2.2   6.9e+02      19     106 ..      41     125 ..      26     129 .. 0.72
   2 ?    8.8   5.5    0.0058       1.8       5      70 ..     101     169 ..      99     209 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 2.2
  TMF_TATA_bd  19 seirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellGeksEeveELraDvaDlKe 106
                   e+++   +l+++k  ler ++  +e+    ++l +e e+ ++l+++l+e++++l++lq++ e++  +  + + e + L a +++ K+
   CCG92310.1  41 EELKKTSEQLEESKVLLERTSKHLEEV---KAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEEKK 125
                  444444444444444444444444444...4556788999999999999999999999999999999999999999999988887766 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0058
  TMF_TATA_bd   5 ssagpsvqlverlsseirrlEgElas...lkeelerleaerdeareeivklmkeneelkelkkeleele 70 
                  ss+++  q  ++l +   +lE E+++   + e++e+l +e+ ++++ i++l++e ++ k+++  ++   
   CCG92310.1 101 SSSSMANQHKSELDALTAKLEEEKKAnqeASEKIENLVKEKLALEDSIARLTNELNKFKQASPAVARAV 169
                  556666666666666667777776551115678899999*****************9999987776555 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   8.3    0.0053       1.6      98     158 ..      31      91 ..      16      94 .. 0.91
   2 ?    4.7   7.5     0.063        19     100     157 ..     103     160 ..      88     162 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0053
  Fzo_mitofusin  98 elsstfarlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLekfeeq 158
                    +++  +ar +++ ++t+++lee+   le++ ++leev+ ++ + r++a++l+++L++ ++q
     CCG92310.1  31 QFKAEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQ 91 
                    5677889999999*******************************************98876 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.063
  Fzo_mitofusin 100 sstfarlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLekfee 157
                    ss+ ++ +++ d  +++leee k+ ++  ek+e++ k+  +l +   +l++eL+kf++
     CCG92310.1 103 SSMANQHKSELDALTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNELNKFKQ 160
                    455677889999********************************************87 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  19.6     0.023       7.2      42     115 ..      40     113 ..      34     115 .. 0.91
   2 ?    6.5   7.8     0.026       8.2      44      91 ..     112     159 ..     109     162 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.023
       DHR10  42 leeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaakarleel 115
                  ee+++  ++lee+k  l++++++lee ++el++   + + l   l+  + +l+ l++++e     a++   el
  CCG92310.1  40 SEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSEL 113
                 68999999*****************************************************9999998887776 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.026
       DHR10  44 eieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenae 91 
                 e+ a +aklee+kk  +e+++++e++ +e+  le  ++rl+  l++ +
  CCG92310.1 112 ELDALTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNELNKFK 159
                 56667899********************************99999866 PP

>> DUF3037  Protein of unknown function (DUF3037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.1     0.015       4.6      23     114 ..      25     117 ..      13     122 .. 0.51
   2 ?    8.1   4.1     0.011       3.4      24      92 ..      61     127 ..      55     160 .. 0.75
   3 ?   -1.0   0.1       7.3   2.3e+03      39      70 ..     132     161 ..     123     174 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.015
     DUF3037  23 fskkegflkvrleldeaRlralfpel.....dlealeeelkaleeicegekaagpiakldlaerfrwltaprstviqtsevhtgltedpeaelerLf 114
                 + k+++++k++++++++ l++ +++l      le  +++l+++++ +++e++  ++  +d    +++ +++   + q se   +++++ ++el+ L 
  CCG92310.1  25 IVKQKNQFKAEYARTSEELKKTSEQLeeskvLLERTSKHLEEVKAELAQERERAQKLDND----LKETQSQLADLQQKSESSSSMANQHKSELDALT 117
                 457777777777777777777777665544445555555555555555554433333322....222222222333334444444444444444443 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.011
     DUF3037  24 skkegflkvrleldeaRlralfpeldlealeeelkaleeicegekaagpiakldlaerfrwltaprstv 92 
                 sk  +++k++l+++++R ++l++  dl++ +++l+ l++  e++++  +++k +l  ++ +l++++++ 
  CCG92310.1  61 SKHLEEVKAELAQERERAQKLDN--DLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEEKKAN 127
                 45667788999999999999997..66899999999999988888777777788888887777776654 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 7.3
     DUF3037  39 aRlralfpeldlealeeelkaleeicegekaa 70 
                 +++++l +e    ale+ +++l++ +++ k+a
  CCG92310.1 132 EKIENLVKEK--LALEDSIARLTNELNKFKQA 161
                 4444444322..23333333333333333333 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  18.6     0.084        26      18     121 ..      30     130 ..      18     139 .. 0.70
   2 ?    7.4   2.9     0.012       3.6      37      98 ..     111     172 ..     108     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.084
                 ......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  18 pallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlpkktaassaeeskssspeeeeeteskkekeeeaek 116
                 ++  k      ++e++   e+l++ k  l++ ++ ++++k+e+ + +++ +kl + ++++ s+l + +++s++++s +++ ++e ++ ++  k ee++k
  CCG92310.1  30 NQ-FKAEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTA--KLEEEKK 125
                 33.366677778899999*********************************999999999999999888888855555554444433332..2222222 PP

                 XXXXX CS
        SKA1 117 akkpk 121
                 a++++
  CCG92310.1 126 ANQEA 130
                 22222 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.012
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  37 ellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlpkktaassaeesksssp 98 
                 + l++l + l+ee++a++++ ++ie+ +k++  l+   + l + l+k ++as a+  + s++
  CCG92310.1 111 SELDALTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNELNKFKQASPAVARAVSMR 172
                 56889999999999999999999999999999999999999999999999988877666655 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  15.1     0.017       5.2      56     117 ..      26      87 ..      25      90 .. 0.92
   2 ?    4.2  15.6      0.14        43       2      71 ..      91     160 ..      85     170 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.017
  TPR_MLP1_2  56 vkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlne 117
                 vk+ +++++e++++ +e+++  +++e+ k  le+  +++ee k el +e + ++k  +dl+e
  CCG92310.1  26 VKQKNQFKAEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKE 87 
                 678899*********************************************99998888876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.14
  TPR_MLP1_2   2 elksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelka 71 
                 +l+ l+++ +s ++ +++++++l +l  +le++++  +ea +k e+ + ++ +  +++++l +eln+ k+
  CCG92310.1  91 QLADLQQKSESSSSMANQHKSELDALTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNELNKFKQ 160
                 4555666666666666666666666666666666666666666666666666666666666666666555 PP

>> PepSY_TM_like_2  Putative PepSY_TM-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.1    0.0025      0.76      14      92 ..       8      87 ..       3     107 .. 0.66
   2 ?    0.6   2.2       1.6   4.9e+02      46      85 ..     109     146 ..      89     186 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0025
  PepSY_TM_like_2 14 salflvglllFavtGitL.Nhaeqieaepsvtekelelpeellallkeeakkeelalpeelaqwlkkql.alsaakreaew 92
                     s++++vg+++ av G+++  + +q++ae ++t++el+ ++e l++ k  +++++ + +ee++++l+++  + ++++++ + 
       CCG92310.1  8 SVVVFVGVVVSAVFGLLIvKQKNQFKAEYARTSEELKKTSEQLEESKVLLERTS-KHLEEVKAELAQEReRAQKLDNDLKE 87
                     4677899********976256789999999999999988888877766666655.44555555555444033333333333 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.6
  PepSY_TM_like_2  46 kelelpeellallkeeakkeelalpeelaqwlkkqlalsa 85 
                      ++ el  +l+a+l+ee k+++ +  e++++ +k++lal++
       CCG92310.1 109 HKSEL-DALTAKLEEEKKANQ-EASEKIENLVKEKLALED 146
                      22222.233334444333333.344555555555544433 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3  22.0      0.27        82       3     125 ..      35     159 ..      24     191 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.27
       TMPIT   3 eweelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk.............eeeeeeveelkeelkerkkvlkevesl 88 
                 e ++ ++e+k+ +e+ +e k  le++sk+ ++++ e++++++r+++l+++lk++++++              +++++e++ l+++l+e+kk        
  CCG92310.1  35 EYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLAdlqqksessssmaNQHKSELDALTAKLEEEKKA------- 126
                 56677788888888888888999999999999999999999999999999999999865554344333333322333333333333333322....... PP

       TMPIT  89 lpkknglylklvlGnvnvsllnkqdkfkyKdeYekFk 125
                     n    + +   v+ +l  +++ +++ +e +kFk
  CCG92310.1 127 ----NQEASEKIENLVKEKLALEDSIARLTNELNKFK 159
                 ....333333344444445555555555555555555 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   8.3       2.1   6.5e+02      35      67 ..      56      88 ..      25     102 .. 0.43
   2 ?    7.2   8.9     0.014       4.4       3      65 ..      69     135 ..      67     136 .. 0.73
   3 ?    7.8   7.6    0.0092       2.8       4      79 ..      91     166 ..      88     176 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 2.1
       Sec34 35 svsektsslheaceqlleeqkrleelaeeieek 67
                  +  ++ l+e   +l +e++r ++l ++++e 
  CCG92310.1 56 LLERTSKHLEEVKAELAQERERAQKLDNDLKET 88
                223333333333333333333333333333332 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.014
       Sec34   3 dqLeskeeecdelleqtdealeqLeeleekfksvsektss....lheaceqlleeqkrleelaeeie 65 
                  +L +++e+ ++l ++++e+++qL++l++k +s s+  ++    l++ + +l ee+k  +e +e+ie
  CCG92310.1  69 AELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQhkseLDALTAKLEEEKKANQEASEKIE 135
                 579999************************9999887766111155555555566666666666664 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0092
       Sec34   4 qLeskeeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeeieekLkyFeeldpitr 79 
                 qL + +++ ++  + +++ +++L+ l+ k ++ ++  ++ +e+ e+l++e+  le+    ++++L+ F++  p+  
  CCG92310.1  91 QLADLQQKSESSSSMANQHKSELDALTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNELNKFKQASPAVA 166
                 66666677777777778888889999999999999999999****************************9988765 PP

>> FlgH  Flagellar L-ring protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   9.2     0.078        24      27     109 ..     113     201 ..      24     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.078
        FlgH  27 GDiltvvieestsasksastktsrsssas....kaskslgasssssfkgkgstsrsnsltgtitvtVvevlpnGnLvi..eGekevrvn 109
                  D lt ++ee+++a+++as+k ++  + +    +  + l+++ ++  +++ +++r  s+++ i  +Vv v  n n+v+   Gek   v+
  CCG92310.1 113 LDALTAKLEEEKKANQEASEKIENLVKEKlaleDSIARLTNELNKFKQASPAVARAVSMRTGIHGKVVSVNRNWNFVVlnIGEKDGLVE 201
                 499****************99998875555554444555555555556778999**********************9944477765554 PP

>> DUF2347  Uncharacterized conserved protein (DUF2347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.6      0.02       6.2      76     163 ..      13     111 ..       8     130 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.02
     DUF2347  76 vGvlvds.........snerlskawryaekLkellkkllese....dntsvLeeyfekeka...kkedeesssekksesrerslsdassleteeealss 158
                 vGv+v+          +n++  +  r  e+Lk++ ++l es+       + Lee+     a   ++++++++ +++ ++ +++l+d ++++++++ + +
  CCG92310.1  13 VGVVVSAvfgllivkqKNQFKAEYARTSEELKKTSEQLEESKvlleRTSKHLEEVK----AelaQERERAQKLDNDLKETQSQLADLQQKSESSSSMAN 107
                 56666666666666669999999***************999966644445555554....322233333444445677777777777777777766666 PP

     DUF2347 159 thlls 163
                 +h  s
  CCG92310.1 108 QHK-S 111
                 665.2 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  29.3     0.048        15     474     583 ..      44     157 ..      26     171 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.048
        HOOK 474 gseeekltelqelledanrrkneLetenrlanqrileLeaqveelqkalqeqgskaed....ssllkkkleehleklkevqeelqkkkeqleelepkls 568
                 ++++e+l+e + lle   ++++e++ e  ++++r ++L + + e q +l++ ++k+e+    + + k++l+++  kl+e ++ +q+ +e +e+l ++  
  CCG92310.1  44 KKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESsssmANQHKSELDALTAKLEEEKKANQEASEKIENLVKEKL 142
                 233455555555555555666666666666666666666666665555555555555521112246777888888888888888888888888877777 PP

        HOOK 569 snkqkieeleeaLkk 583
                 +    i+ l + L+k
  CCG92310.1 143 ALEDSIARLTNELNK 157
                 777778888777776 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  26.7     0.051        16      29     137 ..      42     155 ..      30     170 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.051
   Golgin_A5  29 sLkegs..geeglesstalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreq...lqeleeqleeerkakeeveaelerlkee 122
                 +Lk+ s   ee+  + +++s++l+e+k+e  + re  qkl + +++ +++l+dl+++ ++ ++ ++++   l  l  +leee+ka++e+++++e+l +e
  CCG92310.1  42 ELKKTSeqLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHkseLDALTAKLEEEKKANQEASEKIENLVKE 140
                 566543214444445677888999999999999999999999999999999999888877666555541114455678888888888888888888887 PP

   Golgin_A5 123 lryleeelvrskatl 137
                   +le+   r  ++l
  CCG92310.1 141 KLALEDSIARLTNEL 155
                 766666666554444 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  35.0     0.063        19      25     133 ..      30     141 ..      25     172 .. 0.53

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.063
         ERM  25 qeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekekler...klreaeleaarleeeserkeeeaerLkeeleeareaee 120
                 ++   e  +t+e+L++ ++++ee + lLe+  +++ee +++l++++e+ ++  ++l++   +l++ +++ +   +  ++ ++e + L ++lee ++a++
  CCG92310.1  30 NQFKAEYARTSEELKKTSEQLEESKVLLERTSKHLEEVKAELAQERERAQKLDNDLKEtqsQLADLQQKSESSSSMANQHKSELDALTAKLEEEKKANQ 128
                 444455666777777777777777777777777777777777766666554333333200022233333333333333345555555555555555555 PP

         ERM 121 eakekllealstp 133
                 ea+ek+ ++++++
  CCG92310.1 129 EASEKIENLVKEK 141
                 5555555555443 PP

>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  22.1     0.071        22       8     102 ..      60     154 ..      25     176 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.071
     zf-C4H2   8 ktleleklknklakevealekeekcleeykkelelLeqEkmaHveeLrlIhaDinalEsvikeaeeekekslekakklyeeykklkeevnelrse 102
                  +++le++k++la+e e  +k ++ l+e++++l  L+q  ++ +    + ++ ++al   ++e +++++++ ek+++l++e  +l +++ +l +e
  CCG92310.1  60 TSKHLEEVKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEEKKANQEASEKIENLVKEKLALEDSIARLTNE 154
                 33455555555555555555555555555555555555555555555555555555555555555555555555555555555555555555444 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  19.7      0.13        41       9      93 ..      34     117 ..      23     118 .. 0.80
   2 ?    3.8  16.0      0.29        89      31      98 ..      76     143 ..      72     144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.13
  HIP1_clath_bdg   9 AevtkqlsvarqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLq 93 
                     Ae ++     +++ e++e  k  le++ ++l+e  + +l++ +e  +kL ++l++++ +la l++  ess    +q++s+l+aL 
      CCG92310.1  34 AEYARTSEELKKTSEQLEESKVLLERTSKHLEE-VKAELAQERERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALT 117
                     777888888888888888888888887777655.445566677888999999999999999999999999999999999999986 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.29
  HIP1_clath_bdg  31 eleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLqaEkes 98 
                     e +++l++  +e++++l++ +++ e+  +  ++++ el+ l + Le++++++++ s+++++L +Ek +
      CCG92310.1  76 ERAQKLDNDLKETQSQLADLQQKSESSSSMANQHKSELDALTAKLEEEKKANQEASEKIENLVKEKLA 143
                     44567777777888888888888888888888899999999999999999999999999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3954  (0.220537); expected 358.6 (0.02)
Passed bias filter:                     1284  (0.0716158); expected 358.6 (0.02)
Passed Vit filter:                       297  (0.0165653); expected 17.9 (0.001)
Passed Fwd filter:                       135  (0.0075297); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 1.37u 0.40s 00:00:01.77 Elapsed: 00:00:00.55
# Mc/sec: 1362.29
//
Query:       CCG92311.1  [L=229]
Description: Organic radical activating enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-12   48.7   0.1    1.8e-12   47.9   0.1    1.4  1  Radical_SAM  Radical SAM superfamily
    3.5e-10   40.1   0.3    8.9e-10   38.7   0.1    1.8  2  Fer4_14      4Fe-4S single cluster domain
    1.5e-08   35.0   0.2    2.4e-08   34.3   0.2    1.3  1  Fer4_12      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.1     3e-16   1.8e-12       3      95 ..      41     122 ..      39     135 .. 0.90

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 3e-16
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpdeekle 95 
                   + gCnlrC++C++++       g+ l++e i+++++++     +  v ++ggepll+++   ll+ l+ l   g+ + +et+g l   ++++
   CCG92311.1  41 RLTGCNLRCRWCDTTY---AFSEGKLLPIEAIINQIQKFN----IPLVEVTGGEPLLQKNTLHLLRLLCDL---GYQVLLETSGALS-IRQVD 122
                  678************9...8*******************9....**************************9...**********996.55444 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.1   1.5e-13   8.9e-10       2      94 ..      39     119 ..      38     136 .. 0.78
   2 ?   -1.2   0.0      0.36   2.1e+03      19      47 ..     154     182 ..     129     189 .. 0.47

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.5e-13
     Fer4_14   2 fvrlsgCnlsCkgCdnketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletngtleie 94 
                 f+rl gCnl C++Cd++   +++ gk    e + +++     ++++i  + +tGGePL+    k+ l+l++ l + +  +++ let+g l i 
  CCG92311.1  39 FIRLTGCNLRCRWCDTTY--AFSEGKLLPIEAIINQI-----QKFNIPLVEVTGGEPLLQ---KNTLHLLRLLCDLG--YQVLLETSGALSIR 119
                 9**************865..77888888877777777.....555567789*******76...56666666677767..88899999998864 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.36
     Fer4_14  19 etwkselgkpqteelleqilkdlkkseik 47 
                 ++ k+  g+ ++++  ++ lk+ k++  k
  CCG92311.1 154 DELKFVIGNNEDYQWAKTKLKEEKERLTK 182
                 33333333333444444444433333333 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.2     4e-12   2.4e-08       8      76 ..      38     101 ..      26     115 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 4e-12
     Fer4_12   8 lslfvsgCnlsCkgCfnketwsfksgkeftkelleeiiedlkkesiegltllGGEPllpenaeallelv 76 
                 ++++++gCnl+C+ C    t  f++gk  + e+   ii++++k +i+ + ++GGEPll++n+  ll+l+
  CCG92311.1  38 AFIRLTGCNLRCRWCD--TTYAFSEGKLLPIEA---IINQIQKFNIPLVEVTGGEPLLQKNTLHLLRLL 101
                 3889**********97..999*********555...555666669*************99998888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1588.28
//
Query:       CCG92312.1  [L=394]
Description: NAD(FAD)-dependent dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-46  157.4   0.0    5.2e-46  157.2   0.0    1.0  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    2.1e-12   47.5   0.1    1.6e-11   44.6   0.0    2.4  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    4.8e-12   46.4   0.0    1.3e-05   25.5   0.0    2.3  2  AIF_C          Apoptosis-inducing factor, mitochondrion-assoc
    4.5e-10   39.3   0.0    7.3e-10   38.6   0.0    1.3  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0082   16.7   0.0      0.019   15.5   0.0    1.6  1  Reductase_C    Reductase C-terminal
     0.0097   15.1   0.0      0.025   13.7   0.0    1.7  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
  ------ inclusion threshold ------
       0.15   12.1   0.5         81    3.2   0.0    3.4  3  NAD_binding_9  FAD-NAD(P)-binding
       0.19   11.2   0.3         14    5.1   0.0    2.7  3  DAO            FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.2   0.0   2.3e-49   5.2e-46       3     294 .]       7     295 ..       5     295 .. 0.93

  Alignments for each domain:
  == domain 1  score: 157.2 bits;  conditional E-value: 2.3e-49
                  EEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH..HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEE CS
                  xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgvaedaeias..evvkklnqgielllgeevvkidpgkkkvklekkkegdee 96 
                  ++++GgG+ + aa + ++    +  + ++++e + ++ +++lsk l++ +  ++i    e     +++++l+lge+++++d  ++++       ++e+
   CCG92312.1   7 YLIVGGGMTADAAVRAIRSidENKAIGIISQEPYPPYLRPPLSKGLWKGRPVQRIWCrtE-----SKKVDLFLGETALALDLSNRRLYT-----DKEK 94 
                  78******9999999999987799999*********************999999777642.....457******99********99999.....6778 PP

                  EEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  Pyr_redox_2  97 kiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaaleea 192
                  ++ ++kl++AtG++pr+l+ +      +   r+l++  +l++   + +++ ++GgG+iG+E+A+ l++lgk+v ++   + +  r ++ els +l++ 
   CCG92312.1  95 TYSFEKLLIATGGRPRTLPFKDQ---SIIYYRNLADYYKLREITERaEHFGIIGGGFIGTEIASCLCELGKKVSMIFLEEGIGrRIFPLELSLRLNAF 189
                  9*****************99977...55566*********9999888*************************************************** PP

                  HHHTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGC.......TECC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxx RF
  Pyr_redox_2 193 lekeGvevklgtsvkeidgngekle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDva.......ggkg 282
                  +e++Gv+++ ++svk+ +++g   e  v ++g+e+  d+vv + G+ p+ +l+ +++g+++   +givv+e+l+t+++g+ya+GDva       g++ 
   CCG92312.1 190 FEQKGVRLYPNQSVKDYRKEGG-KEiIVSSTGQELVFDCVVAGLGIIPNVDLA-KEAGIKV--ENGIVVNEYLQTSCEGVYAAGDVAnfycpllGKRL 283
                  *********************9.4469**************************.*******..************************99999999999 PP

                  SS--HHHHHHHH CS
                  xxxxxxxxxxxx RF
  Pyr_redox_2 283 gpelaqaAvqqG 294
                  ++e+  +A ++G
   CCG92312.1 284 RVEHEDNARKMG 295
                  999999999887 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.6   3.5e+03       3      11 ..       8      16 ..       7      27 .. 0.87
   2 ?   -3.1   0.0       5.3   1.2e+04      50      70 ..      65      85 ..      61      89 .. 0.78
   3 !   44.6   0.0   7.2e-15   1.6e-11       3      76 ..     142     214 ..     140     220 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.6
                EEECSSHHH CS
   Pyr_redox  3 vvvGgGyig 11
                ++vGgG ++
  CCG92312.1  8 LIVGGGMTA 16
                79****987 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.3
                HHHTTEEEECSEEEEEEEEET CS
   Pyr_redox 50 lekngievllntkveeiegse 70
                 e +++++ l++++ +++ s+
  CCG92312.1 65 TESKKVDLFLGETALALDLSN 85
                678899999999998887655 PP

  == domain 3  score: 44.6 bits;  conditional E-value: 7.2e-15
                 EEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEE CS
   Pyr_redox   3 vvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsedgvesv 76 
                  ++GgG+ig E A+ l elgkkV+++  ++ +  r ++ e+s +l   +e++g++++ n++v+  ++++ +  ++
  CCG92312.1 142 GIIGGGFIGTEIASCLCELGKKVSMIFLEEGIGrRIFPLELSLRLNAFFEQKGVRLYPNQSVKDYRKEGGK--EI 214
                 69***************************************************************998875..34 PP

>> AIF_C  Apoptosis-inducing factor, mitochondrion-associated, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     4e-07    0.0009       2      45 ..     299     341 ..     298     345 .. 0.92
   2 !   25.5   0.0   5.9e-09   1.3e-05      95     130 ..     342     377 ..     341     378 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4e-07
       AIF_C   2 GenmtGakkpylhqsmfwsDlgPevgyeaiGivDssLptvgvfa 45 
                 G+ m+G+   y h   f+sD+  + +ye++Gi D +Lp ++ + 
  CCG92312.1 299 GKAMAGNPLVYDHIPSFYSDFF-NCSYESVGIADGTLPVISFWN 341
                 899*****************95.89***************9996 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 5.9e-09
       AIF_C  95 edygkGvvfylrddkvvGivlwnvfnrisiarkvik 130
                  d++kGv++y    k++G++lwn+ ++++ ar +++
  CCG92312.1 342 ADHSKGVLYYHDSSKLMGVLLWNIPGKVPEARAILS 377
                 5899******************************97 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   3.3e-13   7.3e-10     117     305 .]      89     269 ..      76     269 .. 0.78

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 3.3e-13
  Pyr_redox_3 117 etske.tyeAkkviiAtGefdkPnklnipGeek....lvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsys 209
                   t+ke ty+ +k++iAtG   +P++l ++ ++     +   y+k +e+   + +++ +iGg+  + ++A  l++ g++V+++  ++ i ++   +  +
   CCG92312.1  89 YTDKEkTYSFEKLLIATGG--RPRTLPFKDQSIiyyrNLADYYKLREI-TERAEHFGIIGGGFIGTEIASCLCELGKKVSMIFLEEGIGRRI--FPLE 181
                  5777669***********8..***998887763221122233334444.345899*******************************999984..4444 PP

  Pyr_redox_3 210 lkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvla.tGykpdlsflkkslfeldedgrpvlteeteetnvpglflaG 305
                  l+     rl++  +++ ++++ n++vk+ +++  +  + +++g+++    d v+a +G  p++++ k+++++  e+g++v  +e  +t  +g++ aG
   CCG92312.1 182 LSL----RLNAFFEQKGVRLYPNQSVKDYRKEGGKEIIVSSTGQELVF--DCVVAgLGIIPNVDLAKEAGIKV-ENGIVV--NEYLQTSCEGVYAAG 269
                  444....5566556666**************99998888899888653..555555***************99.666544..6788999*****999 PP

>> Reductase_C  Reductase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   8.6e-06     0.019       2      75 ..     315     388 ..     314     391 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 8.6e-06
                  EEEEETTEEEEEEE--TT--EEEEEEETTTTEEEEEEEETTEEEEEEEES-HHHHHHHHHHTTTT----HHHHH CS
  Reductase_C   2 fWSDqydlklQiaGlatgadevvvRgdpeerafsvfylrdgrlvaveavnrprdlmaarrliaagasvdpaala 75 
                  f SD +++  + +G+a+g   v+   ++++ + +++y +  +l++v   n p ++  ar ++++g++vdp+ l 
   CCG92312.1 315 FYSDFFNCSYESVGIADGTLPVISFWNADHSKGVLYYHDSSKLMGVLLWNIPGKVPEARAILSEGVAVDPQVLS 388
                  88******************999999999888888888********************************9885 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.68   1.5e+03     195     257 ..       8      69 ..       7      81 .. 0.62
   2 !   13.7   0.0   1.1e-05     0.025     132     250 ..      80     199 ..      64     221 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.68
  K_oxygenase 195 aVvGsGqSaaeifedllrrqkkvelklvtrsealeplddspfvneifsPeyvdyfyslpeekr 257
                  ++vG+G +a   ++ + +  +++ + ++++++ + p    p+ + + +   v++++ ++e+k+
   CCG92312.1   8 LIVGGGMTADAAVRAIRSIDENKAIGIISQEP-YPPYLRPPLSKGLWKGRPVQRIWCRTESKK 69 
                  58999998877766666556666666665544.445555566666666555555555555555 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.1e-05
  K_oxygenase 132 lltveskd.aegeeeelearnlvlgvGtepk.iPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtr..s 225
                  +l++++++  +++e++++ ++l++++G++p  +P   +++         ++y + +e +++++++ ++G+G  + ei+  l +  kkv++  +    +
   CCG92312.1  80 ALDLSNRRlYTDKEKTYSFEKLLIATGGRPRtLPFKDQSIIY---YRNLADYYKLREITERAEHFGIIGGGFIGTEIASCLCELGKKVSMIFLEEgiG 174
                  5777888888999**************998626655555553...444456666666799******************99999888665555443223 PP

  K_oxygenase 226 ealeplddspfvneifsPeyvdyfy 250
                  ++++pl+ s   n +f+ + v+ + 
   CCG92312.1 175 RRIFPLELSLRLNAFFEQKGVRLYP 199
                  5667777777777777666666555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.15   3.3e+02       2      63 ..       9      74 ..       8     100 .. 0.70
   2 ?    2.8   0.4     0.047   1.1e+02       2      20 ..     143     161 ..     142     175 .. 0.83
   3 ?    3.2   0.0     0.036        81     117     154 ..     195     233 ..     183     234 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.15
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepg.....agrvwrtdqseelllNvpasemslft 63
                   ivG+G+++ a+++++ +  ++ + + i   +p++p      +++ w+ +  ++ +  + ++++ lf 
     CCG92312.1  9 IVGGGMTADAAVRAIRSI-DENKAIGIISQEPYPPYlrpplSKGLWKGRPVQRIWCRTESKKVDLFL 74
                   99***9998888877766.577788888888876531111145666666666666666666666665 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.047
  NAD_binding_9   2 ivGaGprGlavlerLlara 20 
                    i+G+G+ G+ ++  L++  
     CCG92312.1 143 IIGGGFIGTEIASCLCELG 161
                    9************999984 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.036
  NAD_binding_9 117 vevh.raevvdleeradgqavlladgaslaadaVvLAlG 154
                    v+++ +++v d ++++++  ++ ++g++l +d Vv  lG
     CCG92312.1 195 VRLYpNQSVKDYRKEGGKEIIVSSTGQELVFDCVVAGLG 233
                    55554789*********999***************9887 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.92   2.1e+03     157     225 ..      66     119 ..      58     133 .. 0.67
   2 ?    1.8   1.4     0.063   1.4e+02       3      23 ..     142     164 ..     140     175 .. 0.77
   3 ?    5.1   0.0    0.0062        14     147     201 ..     181     233 ..     169     252 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.92
                 HHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEE CS
         DAO 157 ealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsdllgllkeldlpispvrgqvl 225
                 e++ v++++g+++ +l+  + ++++  +   + + +++++ +a+G              ++ p++ q++
  CCG92312.1  66 ESKKVDLFLGETALALDLSNRRLYTD-K---EKTYSFEKLLIATGGRP-----------RTLPFKDQSI 119
                 67789999999999997766566655.2...33335688999999652...........2355555555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.063
                 EEECTSHHHHHHHHHHHHTT..E CS
         DAO   3 viiGGGiiGlstAyeLarrg..V 23 
                  iiGGG iG  +A  L + g  V
  CCG92312.1 142 GIIGGGFIGTEIASCLCELGkkV 164
                 69********9998887666553 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0062
                 HHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEE.EEEEEEEE--G CS
         DAO 147 kltaalaraaealGveilegtevtgleeedgkvwgverttpgen.daadavVnaaG 201
                 +l   l + +e++Gv+++ +  v++ ++e+gk   v   t g++ + +d+vV   G
  CCG92312.1 181 ELSLRLNAFFEQKGVRLYPNQSVKDYRKEGGKEIIV-SST-GQElV-FDCVVAGLG 233
                 5666677779****************8887775555.433.66534.588887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2568.17
//
Query:       CCG92313.1  [L=286]
Description: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-07   29.7   0.0    1.2e-06   28.6   0.0    1.6  1  GHMP_kinases_N  GHMP kinases N terminal domain
  ------ inclusion threshold ------
      0.066   13.6   0.0       0.17   12.3   0.0    1.7  1  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.4e-10   1.2e-06       2      61 ..      91     143 ..      90     148 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.4e-10
                     EEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHHHHHHHHHHHHHHHHHHHSHHHHH CS
  GHMP_kinases_N   2 ivikseiPvgaGLGSSAAlavalvaAllallglsleeaklaleaerlaqggngsggDvaa 61 
                     i++++ iP+gaGLG+++++a++++  l +l+g       +   +  l+ ++   g Dv++
      CCG92313.1  91 IKLTKVIPPGAGLGGGSSDAATVLSSLKELFG-------IKDSIDTLFRLAAQLGSDVPF 143
                     88999**************************8.......455555555555556666655 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05      0.17      15      73 ..     207     258 ..     189     269 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
  GHMP_kinases_C  15 ellnlsqrselkavvgilppeleelleal.selGalgaklsGaGgGptvfalfkdkdeae 73 
                       ln+     l++vv++ + +l +l+++l ++       +sG+  G+++fal   +++ +
      CCG92313.1 207 HPLND-----LEQVVFSKYLWLGTLKNWLiRRFHPELCLMSGS--GSSLFALW-RQEDPQ 258
                     44443.....44499999999999999999999999999****..*******5.555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2105.02
//
Query:       CCG92314.1  [L=244]
Description: Orotidine 5'-phosphate decarboxylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-35  123.1   0.1    1.5e-35  122.9   0.1    1.0  1  OMPdecase    Orotidine 5'-phosphate decarboxylase / HUMPS fam
  ------ inclusion threshold ------
      0.082   13.3   0.1       0.12   12.7   0.1    1.2  1  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.1   1.6e-39   1.5e-35       4     219 ..       6     216 ..       4     222 .. 0.92

  Alignments for each domain:
  == domain 1  score: 122.9 bits;  conditional E-value: 1.6e-39
                 EEEE-SSSHHHHHHHHHHHGGGSSEEEEEHHHHHHHTHH.HHTHHHHHHHHHTSEEEEEEEE-S-HHHHHHHHHSTCHHHHTTESEEEEEGTGHHHHHH CS
   OMPdecase   4 clalDvatarelleladkvgpsivvlKthydlvegwgfegtgaklaalarkhgflifeDrKfaDIGntvekqatagsarikewadivtvhavaGkasvk 102
                 ++alD+++  e+l l+  + p i+++K++ +l+ + g     a++++++ + g+ +f+D+Kf+DI++tv +++     + k+++ ++tvh++ G+++++
  CCG92314.1   6 IVALDLSDVSEALNLVHLLRPLIDFFKVGSQLFMAGG-----ADIIKKIIDSGADVFLDLKFHDIPKTVFRAVS---EAVKLKVKFTTVHVLGGEEMLR 96 
                 79***********************************.....*******************************7...778******************* PP

                 HHHHHHHHTTS.EEEEEESTSSGGHHHHHH.H..SHHHHHHHHHHHHHHHTTESEEECCCHTH....HHHHH.TTCSCEEEHHHTTEEEEECTTCCGGG CS
   OMPdecase 103 alaeaaekwgnrgllilaqmsskgnlmlqe.k..gytqacveaarehkaedfvmGfvaqetln....ateed.addfihltpgigleqggdgkgqqynt 193
                 +++ aa+ +    ++ ++ ++s+++ +l++ +  +  ++ v  + + + e+++ G+v++ ++     ++  + ++d  +++pgi+  ++ +g++q+++ 
  CCG92314.1  97 EAVAAAAGSY-TEIIGVTVLTSAEQKTLERvGidRPVEEEVRLLTRLALEAGLKGIVCSGRELvtvrKL--EkQPD-YIVVPGIRW-EKLTGDDQKRTI 190
                 ******9995.9******************8568999999********9***********999764422..23355.5689****9.************ PP

                 HHHHHHHTTCSEEEESHHHHTSSSHH CS
   OMPdecase 194 pekligiagadiiivGRgIlkagdpv 219
                  ++++ + ga +i+vGR+Il+a d+ 
  CCG92314.1 191 GPQEAATLGATHIVVGRSILQAYDKL 216
                 **********************9986 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.4e-05      0.12      47     144 ..      46     150 ..      36     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
                  SEEEEEESSTGGGS...TTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHHHTT....-SEEEEEEBSSSHHHHHHHHT.CTSHHHHHHHHHHH CS
                  xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  Radical_SAM  47 vkevilgggeplly...pdfvellerlaklavpgiritvetngtlpdeeklerllelg....vdrvslgleaaddekvlklmn.rghtfeevlealek 136
                  +k +i +g +++l+    d+ + ++r++ +a  ++++ ++t ++l  ee+l++ + +     +  + +++ +  + k+l++++ +++  eev  ++++
   CCG92314.1  46 IKKIIDSGADVFLDlkfHDIPKTVFRAVSEA-VKLKVKFTTVHVLGGEEMLREAVAAAagsyTEIIGVTVLTSAEQKTLERVGiDRPVEEEVRLLTRL 142
                  8999999999999977777788888888887.999999999999998888888888888888*********************999999********* PP

                  HHHTTSET CS
                  xxxxxxxx RF
  Radical_SAM 137 lreagikr 144
                  + eag+k 
   CCG92314.1 143 ALEAGLKG 150
                  *****994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1717.86
//
Query:       CCG92315.1  [L=562]
Description: Proteasome-activating AAA-ATPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-34  116.7   0.0    1.8e-33  115.7   0.0    1.5  1  AAA             ATPase family associated with various cellula
    5.1e-14   51.7   0.0    4.7e-12   45.4   0.0    2.8  3  Prot_ATP_OB_N   Proteasomal ATPase OB N-terminal domain
    8.5e-06   25.6   0.2    0.00017   21.5   0.1    2.7  2  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
    0.00012   22.4   0.6     0.0024   18.1   0.3    2.7  2  AAA_22          AAA domain
     0.0041   17.5   0.0      0.014   15.8   0.0    1.8  2  AAA_16          AAA ATPase domain
     0.0053   16.8   0.0      0.035   14.1   0.0    1.9  2  ResIII          Type III restriction enzyme, res subunit
     0.0076   16.3   0.0      0.018   15.1   0.0    1.7  1  AAA_5           AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.013   15.9   0.0      0.026   14.9   0.0    1.5  1  RNA_helicase    RNA helicase
      0.015   15.1   0.0      0.034   13.9   0.0    1.6  1  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
       0.02   14.9   0.0      0.059   13.3   0.0    1.7  2  Rad17           Rad17 P-loop domain
      0.048   13.0   0.0      0.095   12.1   0.0    1.5  1  Mg_chelatase    Magnesium chelatase, subunit ChlI
      0.073   13.0   0.5        2.4    8.0   0.3    2.6  1  ATPase_2        ATPase domain predominantly from Archaea
       0.12   11.6   1.1        1.8    7.9   0.1    3.0  4  ATPase          KaiC


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.0   1.3e-36   1.8e-33       2     131 ..     256     401 ..     255     402 .. 0.89

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 1.3e-36
                 EEESSTTSSHHHHHHHHHHHH............THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS...TSEEEEEETGGGHHHHH.TTCCCHHHHH CS
         AAA   2 llyGppGtGKTllakavakel............gvefleisgsellskyvgesekkirelfkeakeka...kpsilfiDEidalaksr.sgseseeeer 84 
                 llyGppG+GKTl+ ka a +l              +f+ i+g+e+l+++vgese+++re+f++a+e a       +fiDE++++ ++r  g+ ++  ++
  CCG92315.1 256 LLYGPPGCGKTLIGKATAYNLtkklrektgeekREYFMHIKGPEILNMWVGESERQVREIFEQARELAkedYLPFIFIDEAESILGTRrAGRFNSILNT 354
                 9*******************95544444433322559*******************************98555***************88889999*** PP

                 HHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  85 vvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 +v+ + +e+dg ++  ++ ++i+a+nr d +dpa+lr gR+drki+++
  CCG92315.1 355 LVPMFCAEMDGIESM-RQAVIILASNRADLIDPAILRpGRIDRKIKVN 401
                 **************7.559**************************986 PP

>> Prot_ATP_OB_N  Proteasomal ATPase OB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   3.4e-15   4.7e-12       2      61 ..      84     142 ..      83     143 .. 0.96
   2 ?    3.2   0.0     0.051        71      29      48 ..     173     191 ..     163     204 .. 0.77
   3 ?   -2.6   0.0       3.3   4.5e+03      31      41 ..     383     393 ..     379     393 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 3.4e-15
  Prot_ATP_OB_N   2 yGtflavnsqdgtadVlvggrrmrVavsPlvdaeeLrpGqeVlLnEalvvVealgyertG 61 
                    +Gt+l +  + +   V +gg ++ + ++P+++ e+L  G++VlLnEa+++V++lg++++G
     CCG92315.1  84 VGTLLDLP-KSDVGLVAQGGSEFYCLIDPRLKGETLLIGTRVLLNEAYAIVGDLGFDASG 142
                    899****9.7999*********************************************99 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.051
  Prot_ATP_OB_N  29 sPlvdaeeLrpGqeVlLnEa 48 
                    sPl++ e+L+pG e++L+ +
     CCG92315.1 173 SPLMK-ERLKPGLEIRLDPS 191
                    55555.9**********855 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.3
  Prot_ATP_OB_N  31 lvdaeeLrpGq 41 
                    l+d++ LrpG+
     CCG92315.1 383 LIDPAILRPGR 393
                    79********6 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.34   4.6e+02      20      49 ..     101     129 ..      84     136 .. 0.83
   2 !   21.5   0.1   1.2e-07   0.00017       1      56 [.     144     199 ..     144     200 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.34
                     TS-EEEEEE-GGGSSST--TTEEEEEETTT CS
  Prot_ATP_ID_OB  20 sdeevvvslagavpremLrpgDlVavdkdt 49 
                     ++ e+++ +   ++ e+L  g++V+++  +
      CCG92315.1 101 GGSEFYCLIDPRLKGETLLIGTRVLLNE-A 129
                     677888888899999***********97.4 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.2e-07
                     EEEEEEE-TTSSEEEEE-TT.S-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE CS
  Prot_ATP_ID_OB   1 VatVsEvlddteraiVktss.deevvvslagavpremLrpgDlVavdkdtgfifEkL 56 
                     ++++ +vl+d +r+ +  ++   +++v +++++ +e+L+pg  +++d++ +++ E++
      CCG92315.1 144 IVKILDVLPD-NRLRISHEGsFGTFIVIRSSPLMKERLKPGLEIRLDPSHRVAIEVV 199
                     577889****.*******66489*******************************986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.3   1.8e-06    0.0024       9     113 ..     256     356 ..     251     378 .. 0.75
   2 ?   -3.0   0.0       5.8   7.9e+03      24      53 ..     440     469 ..     437     478 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.8e-06
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr. 104
                 +++G++G+GKT+  +  +++l++    e+  e+++ +f+ +++++        +l+ +  e ++   + +e++e+ ++ +++ +  +++ iDEa+ +  
  CCG92315.1 256 LLYGPPGCGKTLIGKATAYNLTKK-LREKtgEEKREYFMHIKGPE--------ILNMWVGESER---QVREIFEQARELAKEDYL-PFIFIDEAESILg 341
                 799****************99543.33335777777777777777........66666655555...999***************.**********544 PP

      AAA_22 105 ..s....eealeeLr 113
                   +    + +l++L+
  CCG92315.1 342 trRagrfNSILNTLV 356
                 642555666666664 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.8
      AAA_22  24 rlleqldeeakaeeerpevvfvtlpsstss 53 
                  l e+ +ee++a++ r ++++vtl s+++ 
  CCG92315.1 440 FLIEKVVEEQYARTDRNQFLEVTLRSGKKE 469
                 566777777788888999999999988754 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         5     7e+03     112     129 ..      59      76 ..      21      89 .. 0.54
   2 !   15.8   0.0     1e-05     0.014      19      69 ..     247     291 ..     237     376 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5
      AAA_16 112 agaeasrllellkrllal 129
                 ++++a++  e+l++++++
  CCG92315.1  59 TCDKARDAIEKLNEAVEK 76 
                 333333344444444422 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1e-05
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy 69 
                  + + p   ll+G++G+GK+ + ++ +  l+k+    lr+k+ + +++  y
  CCG92315.1 247 YKHNVPKGFLLYGPPGCGKTLIGKATAYNLTKK----LREKTGEEKRE--Y 291
                 555667899**************9999999999....77777777333..2 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.5e-05     0.035       7      55 ..     222     283 ..     219     301 .. 0.85
   2 ?   -1.1   0.0       1.2   1.7e+03     122     141 ..     317     336 ..     302     342 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.5e-05
                 HHHHHHHHHT...................TTSEEEEEESTTSTHHHHHHHHHHHH-S..... CS
      ResIII   7 yQeeaienlleklks.............krdkrglikmaTGtGKTlvaaklierllkkgkee 55 
                  Q++aie+++++++              +  k +l+  + G+GKTl+  +++++l+kk +e+
  CCG92315.1 222 GQKQAIEAIKDAVELpflyadifakykhNVPKGFLLYGPPGCGKTLIGKATAYNLTKKLREK 283
                 599******97776677777777777669999****************99999999998775 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.2
                 .....HHHTTT-SEEEEETG CS
      ResIII 122 eeeseellrdrfdviiiDEa 141
                 e+++e +++d+ ++i+iDEa
  CCG92315.1 317 EQARELAKEDYLPFIFIDEA 336
                 7788888899999******8 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.3e-05     0.018       2      91 ..     255     354 ..     254     390 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.3e-05
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--H.HHHH--B--...........--------......G-SEEEEESGGG--.HHHHHHHHHHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtte.edlkgrreik..ngttslvdsplvraar......egeilvlDEverae.sevlnsLlslle 90 
                 +lL GppG+gK+ + +  a  l++++ ++ + ++ ++  ++kg+  ++   g+ +++  ++ ++ar          +++DE e +  +  +++++s+l+
  CCG92315.1 255 FLLYGPPGCGKTLIGKATAYNLTKKLREKTGEEKREYfMHIKGPEILNmwVGESERQVREIFEQARelakedYLPFIFIDEAESILgTRRAGRFNSILN 353
                 89*********************9999999998877734555555555666677777777777777676654444677777777776777777777776 PP

                 S CS
       AAA_5  91 e 91 
                 +
  CCG92315.1 354 T 354
                 5 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.9e-05     0.026       2      52 ..     256     309 ..     255     332 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.9e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl....klkkkdsvysrnpeddfwdgYtgqev 52 
                   +lyGp+g+GK+++ k  a +l+kkl    +++k  +++++ +  ++++++ g+  
    CCG92315.1 256 LLYGPPGCGKTLIGKATAYNLTKKLrektGEEK-REYFMHIKGPEILNMWVGESE 309
                   69*********9988777777766655313333.444457777777777766655 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.5e-05     0.034      26      66 ..     245     285 ..     222     295 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.5e-05
      RuvB_N  26 akkreealdhvllyGpPGlGkttlakiiakelgvklkitsg 66 
                 ak +++     llyGpPG Gkt + k  a +l  kl+  +g
  CCG92315.1 245 AKYKHNVPKGFLLYGPPGCGKTLIGKATAYNLTKKLREKTG 285
                 56677777889***********************9998776 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.3e-05     0.059      25      76 ..     224     283 ..     213     300 .. 0.77
   2 ?   -2.4   0.0       2.8   3.9e+03     128     155 ..     407     440 ..     396     451 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.3e-05
       Rad17  25 kkkieevkew.....lkadvLesrkkr...iLLisGPsGCgkstvvkvLskelgiklrew 76 
                 k+ ie++k++     l ad+  + k++     L+ GP+GCgk+ + k  + +l+ klre 
  CCG92315.1 224 KQAIEAIKDAvelpfLYADIFAKYKHNvpkGFLLYGPPGCGKTLIGKATAYNLTKKLREK 283
                 6777777776222224567777778875555899*********99999999999999886 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.8
       Rad17 128 dlrtdkklilvedlP......nkfyrdsdalrev 155
                 +++   ++ l edlP      ++f++d++++ + 
  CCG92315.1 407 EAKEIFRIYLTEDLPydaslmERFEGDLKKVIDF 440
                 3455567889999998877666788887554443 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.9e-05     0.095      25      48 ..     255     278 ..     219     297 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.9e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllpp 48 
                   +ll+GppG+GKt++ k+ +  l++
    CCG92315.1 255 FLLYGPPGCGKTLIGKATAYNLTK 278
                   59************9987665554 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.3    0.0018       2.4      24      47 ..     256     279 ..     245     385 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0018
    ATPase_2  24 fiYGpegsGKtaLlkeiienledk 47 
                 ++YGp g+GKt + k  + nl +k
  CCG92315.1 256 LLYGPPGCGKTLIGKATAYNLTKK 279
                 689999999998888887777433 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.2   3.1e+03      69     118 ..      12      70 ..       8      77 .. 0.53
   2 ?    7.9   0.1    0.0013       1.8      22      46 ..     255     279 ..     249     285 .. 0.83
   3 ?   -1.3   0.0      0.84   1.2e+03     136     173 ..     308     347 ..     301     359 .. 0.79
   4 ?   -0.0   0.0      0.34   4.7e+02      99     130 ..     473     504 ..     446     510 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.2
      ATPase  69 slGwdlekleeegklaiidasesaeesaee.........kdkedleelieelaeaikei 118
                    + +ekl +   l i+d+  ++  + +          k+  dlee  ++ ++ai+++
  CCG92315.1  12 DTSMTFEKLDSLSTLQIVDLLGQSLVNDAFsreaffylrKRVGDLEETCDKARDAIEKL 70 
                 55566777777777777777666543222234445544444455555555555555554 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0013
      ATPase  22 vlitGepGtGKtifalqFlikgaek 46 
                  l++G pG+GKt++++  +++  +k
  CCG92315.1 255 FLLYGPPGCGKTLIGKATAYNLTKK 279
                 589************9988886665 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.84
      ATPase 136 keavaReilrqlvrvlkklgvTailvsekss..seeaagg 173
                 +e ++Rei+ q  +  k+ ++  i++ e++s  + ++ag+
  CCG92315.1 308 SERQVREIFEQARELAKEDYLPFIFIDEAESilGTRRAGR 347
                 6778999999998888999999999999877665555554 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.34
      ATPase  99 kdkedleelieelaeaikeikakrvviDsitg 130
                 ++  +  ++i+++ e  k + +kr++iD+++g
  CCG92315.1 473 RGDLNSGAIIASIVERAKGMAIKRTIIDPLQG 504
                 566677788999999999999*******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.49
# Mc/sec: 3465.83
//
Query:       CCG92316.1  [L=515]
Description: putative proteasome component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.1e-159  531.3   0.0   2.4e-159  531.1   0.0    1.0  1  Pup_ligase  Pup-ligase protein


Domain annotation for each model (and alignments):
>> Pup_ligase  Pup-ligase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  531.1   0.0  1.3e-163  2.4e-159       3     439 ..      13     466 ..      11     467 .. 0.97

  Alignments for each domain:
  == domain 1  score: 531.1 bits;  conditional E-value: 1.3e-163
                 EEEEEE-EEEECT-TTEEEE-HHHHHHHHHHHHGGGEE...--------------CHHHHHHHS-S--..................EEEETTS-EEEEE CS
  Pup_ligase   3 mGiEtEYgilvpaepeaeslspeelarelvaayaaaea...wdyeeesplrdargfelerararssql..................nvflanGarlYvd 80 
                 +G+EtE+gi+v +   +++++ +e + +lv++++++ +   wdy++e+p++dargf+ ++ r++++++                  + +l+nGarlY d
  CCG92316.1  13 FGLETEFGISVLE---NADIDVVEESIHLVRSASQLGSpnlWDYTKEDPHQDARGFRARELRQDADEAnffsqdrqrpysfeeiksDFVLRNGARLYND 108
                 8**********44...44679999******99999988999*****************999999998899***************************** PP

                 TTEEEEE---BSSHHHHHHHHHHHHHHHHHHHHHHHHCCC-EEEEESSSB-TTS-B--EEEEEEEETTS-HHHHHHCHHHHHHHCHHHH---EEEE..T CS
  Pup_ligase  81 gahpEystpEvtspldlvaydrAgdeilreaaeeaeeelggevklykNnvDskGasYGchENYlvrravpfeelakkLlpflvtRqiitGaGrvgl..g 177
                 ++hpEyst+E++++ +l+a+d+Ag++il+e+a++ +++ +++v +ykNn+D +G+sYGchENYl+ r +p+++l++ +lpfl+tRqi++GaG++g   +
  CCG92316.1 109 HTHPEYSTAECSTLIELIAQDKAGERILEECAKASSKKRRHTVCMYKNNTDFAGHSYGCHENYLIPRLIPWDRLVEGMLPFLITRQIYAGAGKLGWerE 207
                 ***********************************99999*******************************************************9444 PP

                 TTS-CEEEES-SSHHHCCCCCCSSSTTSEECEES-S--SS-TTTEEEEEE------SSHHHHHHHHHHHHHHHHHHHCT---S---BSSCCCCHHHHHC CS
  Pup_ligase 178 eegeeagFqlsqrAdfieeevslettleRpiintrdEphadaskyrRLhvivgDsnlsevatllkvgttalvLdlieagkelpdleladpvaalrevsr 276
                 ++g  +g+q+sqrAdf++e v+++t+++RpiintrdEpha+++ yrR+hvi+gD+nlse++t+lkvgttalvL++++ ++  +++ ladp+ a r++sr
  CCG92316.1 208 DHGMPGGYQISQRADFFTELVGIDTMNRRPIINTRDEPHANPKLYRRFHVILGDANLSEFSTWLKVGTTALVLEALQYERIPKRFFLADPLYAHRSISR 306
                 556789********************************************************************************************* PP

                 -TTS--EEEBTTS-EEEHHHHHHHHHHHHHHHHHHHHGGCSHHHHHHHHHHHHHHHHHC-SCCCTTT-HHHHHHHHHHHHHHHHT--TT-HHHHHHHHH CS
  Pup_ligase 277 dltlkatveladgreltaleiqrayleavrkfleeeeeeeeetkevlelWeevldaleedpqaladridWvaKlrLleelrereglswddpklkalDlq 375
                 d+++++++ela+g+++ta+e+q+ y++ v+++++ ++    e+++v ++W+e+l++l+++p al+dr+dW+aK +Ll+++re+++lsw+dp+l++lDl+
  CCG92316.1 307 DPKFRWEIELAHGGRATAIELQNDYADWVARYVDLDHP---EKEKVWKAWKETLHTLSSNPYALKDRLDWMAKFWLLQTFREDQNLSWEDPWLQSLDLE 402
                 **********************************9875...89******************************************************** PP

                 TTB-STTTSHHHHHHHCTSS--SS-HHHHHHHHHS--SSSTHHHHHHHHHHHHHHEEEEESSEE CS
  Pup_ligase 376 YhdirpekglfarLvargrverlvteeeieravtepPadtrAalRgelvrefaeevvavdWdsv 439
                 Yh +++++glf++L+++g + rl+t+e+i +a+++pP+++rA++Rg+++++f+++ ++v+Wd++
  CCG92316.1 403 YHLVDRSRGLFYALESAGDIIRLTTDEDICQAIQQPPSSSRAFVRGKCIQRFSKDLINVQWDYI 466
                 *************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3600.85
//
Query:       CCG92317.1  [L=61]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 484.30
//
Query:       CCG92318.1  [L=278]
Description: 20S proteasome, alpha subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-24   85.8   0.0    3.6e-24   85.3   0.0    1.1  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0     2e-28   3.6e-24       4     183 ..      57     243 ..      55     246 .. 0.92

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 2e-28
                 S-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTTT CS
  Proteasome   4 GttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgrr 102
                  tt++++ +k+gv++a+d+ratag+ ++ ++ +eK++ id+++++a+aG+ a a  ++r ++   + yr +  +p++v   v+ v+++l  +++ s ++
  CCG92318.1  57 STTILAFYYKEGVIVAGDRRATAGNLVIHER-AEKVISIDRNTILAIAGTPATAFEIARVLQHSFEFYRRSQLQPLSVAAKVRMVSKLLKDNMALSLQG 154
                 69*************************9999.7***************************************************************9*9 PP

                 TTSEEEEEEEEE..TTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHH..HHH....STTBSHHHHHHHHHHHHHHHHHHBTTSCS CS
  Proteasome 103 pfgvslliagvd..eeggpeLyqidpsGsyieekdavaiGsgseaaktale..key....kedltleeavelavkalkealerdklsgk 183
                   +v  l+a  d   ++gp +y  d  G+ ++  d++a Gsgs a++++l+  +++    + + ++eea++la++ l  a+e d+++g+
  CCG92318.1 155 IGIVVPLLALADpfGKEGPTIYFYDALGAQFQTVDFAASGSGSPAVRSILQyiNRWsgkpSIERNEEEAIRLALQLLDIAAESDTATGG 243
                 **********99443557***********999999***************94455689444456899*****************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2005.04
//
Query:       CCG92319.1  [L=255]
Description: 20S proteasome, alpha subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-07   28.8   0.0    1.3e-06   28.1   0.0    1.3  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   7.1e-11   1.3e-06      36     131 ..      47     145 ..      30     155 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 7.1e-11
                 STSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHS.SGTCHHHHHHHHHHHHHHHHHHCTT.TTTSEEEEEEEEETT.TEEEEEEEETTSEEE CS
  Proteasome  36 veKifkiddhigvafaGlaaDartlvrraraeaqlyrlryg.rpipverlvarvaaklqaytqrsgr.rpfgvslliagvdee.ggpeLyqidpsGsyi 131
                   Ki++i+dh+++++ G  aD++ +++ a + a+l+ ++   ++++ +r+v +  a  +++ +++ +  pf+ ++l++ + e+ ++ e + +d++Gsy+
  CCG92319.1  47 TPKIYEIYDHLAMGCIGHPADMEKIRQSAIELAHLEGFTRSrEDVSARRIVTYNLAVGLKNAFEQIFsAPFLFRCLFVELGEKlEKDEGWIVDYDGSYW 145
                 69***********************************98662667777777777777777776664438999999999998653678888899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2198.16
//
Query:       CCG92320.1  [L=463]
Description: putative proteasome component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.6e-120  400.9   0.0   8.7e-120  400.7   0.0    1.0  1  Pup_ligase  Pup-ligase protein


Domain annotation for each model (and alignments):
>> Pup_ligase  Pup-ligase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.7   0.0  4.8e-124  8.7e-120       1     439 [.       3     431 ..       3     432 .. 0.94

  Alignments for each domain:
  == domain 1  score: 400.7 bits;  conditional E-value: 4.8e-124
                 --EEEEEE-EEEECT-TTEEEE-HHHHHHHHHHHHGGGEE--------------CHHHHHHHS-S--EEEETTS-EEEEETTEEEEE---BSSHHHHHH CS
  Pup_ligase   1 rimGiEtEYgilvpaepeaeslspeelarelvaayaaaeawdyeeesplrdargfelerararssqlnvflanGarlYvdgahpEystpEvtspldlva 99 
                 ri+GiEtEYg+l   +++a   +p ++ +++ ++y        e++ +l d+++ + ++     +  + fl nG+rlY+d++h+Ey+t+E+++++dlva
  CCG92320.1   3 RIVGIETEYGCLF--NQGA---DPLSVPEQV-KDY-----LILEKKIGLIDIHDRDYDEP----AGNGGFLFNGGRLYIDMGHVEYCTSECKNLADLVA 86 
                 9************..4455...566665555.666.....67899********9888766....33478****************************** PP

                 HHHHHHHHHHHHHHHHHHCCC-EEEEESSSB-TT.S-B--EEEEEEEETTS-H.HHHHHCHHHHHHHCHHHH---EEEE........TTTS-CEEEES- CS
  Pup_ligase 100 ydrAgdeilreaaeeaeeelggevklykNnvDsk.GasYGchENYlvrravpf.eelakkLlpflvtRqiitGaGrvgl........geegeeagFqls 188
                  d Ag+++l++a++e+    +++v+++kNn+D+  Ga++GchENYl+rr+ p+ ++ +++Ll+fl+ R +++G+Grvg         +++g++++Fq+ 
  CCG92320.1  87 SDYAGERLLQTALDELGL--SESVSFIKNNIDHYtGATFGCHENYLIRRNAPLtQQNVESLLAFLAIRGLMVGSGRVGSvlpakkynKKDGKTVHFQIM 183
                 ***************955..599*********988***************776156789***************************9999********* PP

                 SSHHHCCCCCCSSSTTSEECEES-S--SS-TTTEEEEEE------SSHHHHHHHHHHHHHHHHHHHCT---S---BSSCCCCHHHHHC-TTS--EEEBT CS
  Pup_ligase 189 qrAdfieeevslettleRpiintrdEphadaskyrRLhvivgDsnlsevatllkvgttalvLdlieagkelpdleladpvaalrevsrdltlkatvela 287
                 qrAd+i++e+   ++++R++in+rdEp +d+ ++rRLh+++gDsn++ ++++lkvgtt+lvLdl+e  + +p++++ dpv+++++vs+  t +  +ela
  CCG92320.1 184 QRADYIQTEIYEWVQFNRALINARDEPLSDPCRFRRLHLLLGDSNILPFSQALKVGTTSLVLDLLEC-RMMPKIAFVDPVKTMQTVSHAATADCLIELA 281
                 *******************************************************************.89***************************** PP

                 TS-EEEHHHHHHHHHHHHHHHHHHHHGGCSHHHHHHHHHHHHHHHHHC-SCCCTTT-HHHHHHHHHHHHHHHHT--TT-HHHHHHHHHTTB-STTTSHH CS
  Pup_ligase 288 dgreltaleiqrayleavrkfleeeeeeeeetkevlelWeevldaleedpqaladridWvaKlrLleelrereglswddpklkalDlqYhdirpekglf 386
                 dgr++t +++ ++y+ +++k+ e++e    ++ ++l++W+evl+ l++++++l +++dW++K+ Lle++  +e+++wddp+l++lDl+Yh+i+++k+++
  CCG92320.1 282 DGRKWTPVDVLSEYYLQAEKLDEKDE----DALWILKAWKEVLEGLSGNQEKLIGKVDWITKRYLLESFCMQEKIAWDDPWLDSLDLEYHQIDRKKNFV 376
                 ********************998875....799****************************************************************** PP

                 HHHHHCTSS--SS-HHHHHHHHHS--SSSTHHHHHHHHHHHHHH..EEEEESSEE CS
  Pup_ligase 387 arLvargrverlvteeeieravtepPadtrAalRgelvrefaee..vvavdWdsv 439
                   L ++   +  + +   ++  +epP++trA++R+ l+r++a+e   + +dWd+v
  CCG92320.1 377 WLLPNTSYEDLALPAWPQNNYLAEPPRNTRAYVRSLLMRQLAKEnvSYVIDWDYV 431
                 ****999999999*****************************99877999***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3237.83
//
Query:       CCG92321.1  [L=437]
Description: Signal recognition particle GTPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-64  216.7   0.0    3.2e-64  216.2   0.0    1.2  1  SRP54            SRP54-type protein, GTPase domain
      2e-29  102.1   0.0    4.7e-29  100.9   0.0    1.7  1  SRP_SPB          Signal peptide binding domain
      2e-19   69.6   0.1      2e-19   69.6   0.1    3.5  4  SRP54_N          SRP54-type protein, helical bundle domain
    2.3e-07   31.2   0.1    5.3e-07   30.0   0.1    1.5  1  AAA_22           AAA domain
    5.1e-07   29.8   0.2      5e-06   26.6   0.1    2.3  2  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
      4e-05   23.0   0.0    7.2e-05   22.2   0.0    1.3  1  Zeta_toxin       Zeta toxin
     0.0006   20.0   0.0     0.0013   18.9   0.0    1.5  1  AAA_33           AAA domain
     0.0011   18.7   0.0     0.0026   17.5   0.0    1.6  1  AAA_24           AAA domain
     0.0021   17.6   0.0     0.0073   15.8   0.0    1.8  2  ParA             NUBPL iron-transfer P-loop NTPase
     0.0022   17.7   0.3      0.025   14.2   0.1    2.4  2  Thymidylate_kin  Thymidylate kinase
     0.0029   18.0   0.0      0.034   14.6   0.0    2.3  2  AAA_17           AAA domain
     0.0044   16.2   0.0     0.0067   15.6   0.0    1.3  1  G-alpha          G-protein alpha subunit
     0.0052   17.2   0.0      0.016   15.6   0.0    1.9  1  AAA              ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.017   14.6   0.1      0.042   13.3   0.0    1.7  2  KTI12            Chromatin associated protein KTI12
      0.027   14.9   0.9      0.092   13.1   0.7    2.0  2  AAA_16           AAA ATPase domain
      0.027   14.1   0.0      0.058   13.0   0.0    1.5  1  Zot              Zonular occludens toxin (Zot)
      0.039   13.1   0.0      0.088   12.0   0.0    1.6  1  ArsA_ATPase      Anion-transporting ATPase
       0.04   13.8   0.1       0.14   12.1   0.1    1.7  1  AAA_31           AAA domain
       0.04   13.9   0.0      0.084   12.9   0.0    1.6  1  ResIII           Type III restriction enzyme, res subunit
      0.042   14.4   0.0       0.11   13.1   0.0    1.9  1  AAA_18           AAA domain
      0.044   14.3   0.2       0.12   12.9   0.1    1.8  1  NBD_C            Nucleotide-binding C-terminal domain
      0.052   13.3   0.0      0.097   12.4   0.0    1.4  1  AAA_30           AAA domain
      0.065   12.6   0.0       0.12   11.7   0.0    1.4  1  ATPase           KaiC
      0.074   12.9   0.1       0.26   11.2   0.0    1.9  2  APS_kinase       Adenylylsulphate kinase
      0.075   12.5   0.0       0.21   11.1   0.0    1.7  1  Arf              ADP-ribosylation factor family
      0.081   13.4   0.0        0.4   11.2   0.0    2.1  2  ABC_tran         ABC transporter
      0.083   13.1   0.1       0.25   11.6   0.0    1.8  2  AAA_28           AAA domain
        0.1   12.1   1.0          1    8.9   1.0    2.2  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.16   11.8   2.0        1.1    9.1   2.0    2.3  1  NACHT            NACHT domain
       0.18   11.6   0.0       0.62    9.8   0.0    2.0  2  ATP_bind_1       Conserved hypothetical ATP binding protein
        0.2   11.1   0.2        1.6    8.1   0.2    2.1  1  Pox_A32          Poxvirus A32 protein
       0.21   11.2   1.2        1.2    8.7   1.2    2.1  1  AAA_25           AAA domain
          2    7.8   5.6        6.3    6.2   0.1    2.5  2  SRPRB            Signal recognition particle receptor beta su
        4.8    7.6   7.5         46    4.4   7.6    2.7  1  AAA_23           AAA domain


Domain annotation for each model (and alignments):
>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.2   0.0     6e-67   3.2e-64       3     195 ..     100     292 ..      98     293 .. 0.99

  Alignments for each domain:
  == domain 1  score: 216.2 bits;  conditional E-value: 6e-67
                 EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE--SSTTHHHH CS
       SRP54   3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakeavekakeekidvvlvDTaGrlqndkel 101
                  ill+Gl+G+GKTtt+aKLa ++kk++++v lvaaD +R+aA+eQL  la++++vpv++ ++e++  a++++a+e+ k+++  vv+ DTaGrl  d+el
  CCG92321.1 100 RILLCGLNGSGKTTTAAKLALWCKKNKERVGLVAADLMRPAAIEQLTKLASQIDVPVYAPEKEEKIEAFLSRALEQTKQDRLSVVIYDTAGRLDLDEEL 198
                 69************************************************************************************************* PP

                 HHHHHHHHHHHSSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEEE-SSSTTGEEE--HHHHHHHHH CS
       SRP54 102 meelkkikkvvkpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfigvGekiedleefdperlvsrll 195
                 ++el+   +vv p+evllv+d++tgq+ v  +kaF e++ ++g+il+k+Dgda+gGaa+s+++ ++l + f+g+Gek+e +e f++erlv+rl+
  CCG92321.1 199 LKELQLAYSVVLPQEVLLVIDSATGQKGVDIVKAFIEKIPVSGLILSKFDGDARGGAAFSVKKVTGLSVLFLGTGEKVEAFELFRAERLVDRLF 292
                 ********************************************************************************************98 PP

>> SRP_SPB  Signal peptide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0   8.9e-32   4.7e-29       1      98 [.     324     419 ..     324     420 .. 0.93

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 8.9e-32
                 SSCTHHHHHHHHHHHCCCCCCHHHHCCC.....H...CCCCCHHHHHHHHHTTSBHHHHHSGCG-..HHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH CS
     SRP_SPB   1 eftlrdlleqlqqikkmGplskllsmiPgmsaeakaeeeaekklkrieaiidSMTkeErdspekllkesRkrRiArGsGtsvqevnellkqfeqmkkm 98 
                 +f l+d+l q++++kk+Gpl++lls +Pg+  +++  e ++kklkrieai+ SMT+eEr++p+ l++ +Rk RiA+GsGt+v e+ne+l++f++++k+
  CCG92321.1 324 QFGLDDFLVQMRMLKKLGPLDQLLSYLPGFPGKGQ-IEIDDKKLKRIEAIVLSMTPEERKNPD-LINGKRKLRIAKGSGTTVPEINEFLRRFDSVRKL 419
                 699**************************997754.45669**********************.999**************************99986 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.1   3.7e-22     2e-19       1      75 []       5      82 ..       5      82 .. 0.96
   2 ?   -0.8   0.0       3.6   1.9e+03      11      31 ..     187     203 ..     178     205 .. 0.64
   3 ?   -2.1   0.0       8.6   4.5e+03      40      51 ..     226     237 ..     226     238 .. 0.90
   4 ?   -2.2   0.2       9.3   4.9e+03      47      60 ..     300     312 ..     297     324 .. 0.47

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 3.7e-22
                HHHHHHHHHHHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTS...S-HHHHHHHHHHHHH CS
     SRP54_N  1 LgkklnsalkklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekk...lkpkqqvkkivkdeL 75
                L +kl++++k+l+g++k++ee++  a++e++ aLl aDV ++vv++++e+vk+ka+g k    ++p++q++ki +d+L
  CCG92321.1  5 LQQKLQALFKNLRGYGKLSEENISGAIREIRLALLAADVHYQVVRDICEEVKQKALGTKVlesIRPGDQFIKIFHDAL 82
                679******************************************************55599999***********97 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 3.6
                 HHCCSSCGHHHHHHHHHHHHH CS
     SRP54_N  11 klsgkskideedleealkele 31 
                    g+  +dee+l+e    l+
  CCG92321.1 187 DTAGRLDLDEELLKE----LQ 203
                 555666788888888....65 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 8.6
                 -HHHHHHHHHHH CS
     SRP54_N  40 gvkvvkklienv 51 
                 gv++vk +ie++
  CCG92321.1 226 GVDIVKAFIEKI 237
                 7999*****997 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 9.3
                 HHHHHHHHHHCTTS CS
     SRP54_N  47 lienvkkkavgekk 60 
                 ++e+v +++++e+ 
  CCG92321.1 300 FVEKV-EAQIKEQS 312
                 45555.33444332 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1     1e-09   5.3e-07       8     114 ..     101     204 ..      96     224 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1e-09
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka..erlsseellealeqalraravielliiDEaqhlr 104
                 ++++G  G+GKTt++++l+ + ++    ++er+++v  +l  +   ++ l++l+++++++  a  ++ + e++l++  ++ ++ +  +++i D a +l+
  CCG92321.1 101 ILLCGLNGSGKTTTAAKLALWCKK----NKERVGLVAADLMRPAAIEQ-LTKLASQIDVPVYApeKEEKIEAFLSRALEQTKQDRL-SVVIYDTAGRLD 193
                 79*******************854....33688888888888885544.59**********9977777777777666666666666.8**********8 PP

      AAA_22 105 .seealeeLrs 114
                   ee+l+eL  
  CCG92321.1 194 lDEELLKELQL 204
                 88****99965 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       1.4   7.5e+02      87     121 ..      42      77 ..      25      81 .. 0.85
   2 !   26.6   0.1   9.4e-09     5e-06       9      89 ..     108     252 ..     104     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.4
                 ...-TTCHHHHHHHHHHC.TS-EEEEEE--CCHCCC CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
        CbiA  87 eneetllkealeelkqry.gvpvlgviprdeavaea 121
                 + +++  ++ +ee+kq+  g +vl +i+  ++++++
  CCG92321.1  42 DVHYQVVRDICEEVKQKAlGTKVLESIRPGDQFIKI 77 
                 5577888999999999999*****999988888776 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 9.4e-09
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH.HTTEB-HHHH.................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.................................................... RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlai.leglendiep.................................................... 54 
                 G+GKTt+aa+La   ++++ rV lv aD +++++   l +l  +i+                                                     
  CCG92321.1 108 GSGKTTTAAKLALWCKKNKERVGLVAADLMRPAAIEqLTKLASQIDVpvyapekeekieaflsraleqtkqdrlsvviydtagrldldeellkelqlay 206
                 9*******************************96424444444444499999*********************************************** PP

                 ...............CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS... CS
                 ...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ...............dlkrllellealgkkkalllkiagvvlnrvdgene 89 
                                + ++++ +++a+ +k    + + g++l ++dg+++
  CCG92321.1 207 svvlpqevllvidsaTGQKGVDIVKAFIEK----IPVSGLILSKFDGDAR 252
                 ************999888889999999999....889*********9964 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.4e-07   7.2e-05      13     119 ..      95     204 ..      84     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.4e-07
  Zeta_toxin  13 qerPklillgGqpGAGKselaellkdelerqgnvv.rldpDdlRel.hPeyeeilka.dpkkaseltqkdaselvekllqeaiengyniivegtlrspd 108
                 +erP  ill G  G+GK+++a++l+   +++++ v  + +D +R+  + +  ++  + d+  ++   ++ +  +  ++l+++ + + ++++  t    d
  CCG92321.1  95 SERPLRILLCGLNGSGKTTTAAKLALWCKKNKERVgLVAADLMRPAaIEQLTKLASQiDVPVYAPEKEEKIEAFLSRALEQTKQDRLSVVIYDTAGRLD 193
                 69**************************96655551678999**86255666666677999999999*********************99888877777 PP

  Zeta_toxin 109 vvkklaealkk 119
                   ++l ++l+ 
  CCG92321.1 194 LDEELLKELQL 204
                 77777777765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.4e-06    0.0013       2      76 ..     101     186 ..     101     209 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.4e-06
      AAA_33   2 vllvGlpGsGKstlaerl...lkklg..avllssdt....lrrrlfg..tdqqsktdytrvldrlyqilnelarkalsagrnvild 76 
                 +ll+Gl+GsGK+t a +l   +kk++  + l++ d     ++++l++  ++ + + + ++ ++++ ++l++ ++++ + + +v++ 
  CCG92321.1 101 ILLCGLNGSGKTTTAAKLalwCKKNKerVGLVAADLmrpaAIEQLTKlaSQIDVPVYAPEKEEKIEAFLSRALEQTKQDRLSVVIY 186
                 689**************977788888885566666511114444444433333444666667778888888888888888876664 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.9e-06    0.0026       2      77 ..      98     192 ..      97     203 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.9e-06
      AAA_24   2 klkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel......................aaeladyktlviDtidel 77 
                 +l+il+ G +g+GKTt+a++l   +l +  +k    l a+++ ++ ++e++ + + ++                      +++++++++++ Dt++ l
  CCG92321.1  98 PLRILLCGLNGSGKTTTAAKL---ALWCKKNKERVGLVAADLMRPAAIEQLTKLASQIdvpvyapekeekieaflsraleQTKQDRLSVVIYDTAGRL 192
                 689******************...99998888666777788888888888888888888889999999***********99*************9876 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.4e-05    0.0073      11      55 ..     105     150 ..      99     186 .. 0.76
   2 ?   -2.4   0.0       4.8   2.5e+03     102     147 ..     333     380 ..     326     396 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.4e-05
        ParA  11 gKGGVGKStvavnlAlaLakkglkvgllDaDiyGps.iprllgvee 55 
                 g  G GK+t+a++lAl  +k+  +vgl+ aD++ p  i +l+++ +
  CCG92321.1 105 GLNGSGKTTTAAKLALWCKKNKERVGLVAADLMRPAaIEQLTKLAS 150
                 66799***************************98862455555554 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.8
        ParA 102 qllkdvewgelDyLiiDlP..PGtgDeqltvaqklplagaviVttpqe 147
                 q+    + g lD L+  lP  PG g +++   +  +++++v+  tp+e
  CCG92321.1 333 QMRMLKKLGPLDQLLSYLPgfPGKGQIEIDDKKLKRIEAIVLSMTPEE 380
                 555556678899999999988888888887766667777776667765 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.65   3.4e+02      57      80 ..      35      58 ..      14      61 .. 0.80
   2 !   14.2   0.1   4.8e-05     0.025       3     100 ..     105     191 ..     103     225 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.65
                     HHHHHHHHHHHTTHHHHHHHHHTT CS
  Thymidylate_kin 57 eallfaadriehleekikpalkqg 80
                      + l+aad+++++++ i +++kq+
       CCG92321.1 35 RLALLAADVHYQVVRDICEEVKQK 58
                     567899***********9999996 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 4.8e-05
                      ESTTSSHHHHHHHHHHHHHHTTE.EEEESSSTTSHHHHHHHHHHH.TCS---HHHHHHHHHHHHHHTTHHHHHHHHHTT-EEEEES-HHHHHHH CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegikvvltrepggteiGekirelll.keeeleeqteallfaadriehleekikpalkqgktvivdRylfSslaY 95 
                      Gl+G+GKtt a++l+ ++k++++         g   ++++r +   + ++l++q  +  +a ++ e++e  + +al+q k        +S+++Y
       CCG92321.1 105 GLNGSGKTTTAAKLALWCKKNKE-------RVGLVAADLMRPAAIeQLTKLASQIDVPVYAPEKEEKIEAFLSRALEQTK-----QDRLSVVIY 186
                      9******************9994.......56666677777554446677777777777777777777777777777733.....334677777 PP

                      HHTTT CS
  Thymidylate_kin  96 qgake 100
                      ++a++
       CCG92321.1 187 DTAGR 191
                      77644 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.4e-05     0.034       2      94 ..     105     204 ..     104     222 .. 0.64
   2 ?    0.6   0.0       1.4   7.1e+02      46      76 ..     301     332 ..     278     349 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.4e-05
                 E-TTSSHHHHHHHHH....HHHTEEEEEHHHHHHHHHHTTTSHSSHHHHC.....TSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEES CS
      AAA_17   2 GgPGsGKgtqceklv....ekygfthlsaGdllreeakrgglakardemr.....klpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldg 91 
                 G+ GsGK+t ++kl+    ++ +   l a dl+r  a + +l k  ++++      +++e+ ++++ +a e+ +++ + + v+ d+  r++ ++++l++
  CCG92321.1 105 GLNGSGKTTTAAKLAlwckKNKERVGLVAADLMRPAAIE-QLTKLASQIDvpvyaPEKEEKIEAFLSRALEQTKQD-RLSVVIYDTAGRLDLDEELLKE 201
                 99************877644556666899*****65543.444556666654332334444455556666655554.3357899998888888777777 PP

                 SHH CS
      AAA_17  92 lpk 94 
                 l+ 
  CCG92321.1 202 LQL 204
                 665 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.4
                 HCTSHHHHHHHHHHHHHHHHHHHH.HSSEEEE CS
      AAA_17  46 mrklpleekkelqkeaaekiaeea.kkkgvlv 76 
                 ++k++ ++k++ ++e+++ki+ ++ + +++lv
  CCG92321.1 301 VEKVEAQIKEQSLAEIEKKIRSKQfGLDDFLV 332
                 56788888888888888888877655555655 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.3e-05    0.0067      11      78 ..      86     152 ..      78     233 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-05
                 XXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS----HHHHHC..CHHHHHHHHHHHHHHHHHHH CS
     G-alpha  11 lkaerkarkkkrevkllllGqseSGKsTilkqlkllykkgfseeelat..wraviqlnivrsiktileal 78 
                 l +e++   ++r++++ll+G ++SGK+T+  +l l +kk+   +e+      ++++   ++++ ++  ++
  CCG92321.1  86 LASEKQGLLSERPLRILLCGLNGSGKTTTAAKLALWCKKN---KERVGlvAADLMRPAAIEQLTKLASQI 152
                 5667777777899********************9988663...222220123344444444444444433 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     3e-05     0.016       1      66 [.     101     188 ..     101     205 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3e-05
                 EEEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSS.................STTHHHHHHHHHHHHHHHTS...TSEEEEEET CS
         AAA   1 vllyGppGtGKTllakavakelg..vefleisgsellsk.................yvgesekkirelfkeakeka...kpsilfiDE 66 
                 +ll+G  G GKT++a  +a  ++   e + + +++l+                   y  e+e+ki++++++a e+    + s+++ D 
  CCG92321.1 101 ILLCGLNGSGKTTTAAKLALWCKknKERVGLVAADLMRPaaieqltklasqidvpvYAPEKEEKIEAFLSRALEQTkqdRLSVVIYDT 188
                 69*****************9986333333333333332234444555788899999***************95555565568888775 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     8e-05     0.042       4      42 ..     101     142 ..      98     190 .. 0.74
   2 ?   -3.3   0.0       9.2   4.9e+03     221     252 ..     387     418 ..     360     427 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8e-05
                 EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH.... CS
       KTI12   4 vvltGlPssGKstrakeLakaleeekrsvvviddeslg...i 42 
                 ++l+Gl  sGK+t a++La   +++k +v ++  + ++   i
  CCG92321.1 101 ILLCGLNGSGKTTTAAKLALWCKKNKERVGLVAADLMRpaaI 142
                 89***************************9999998875551 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.2
                 .................HHHHHHHHHHHHHHHT CS
       KTI12 221 lpgsseslelpak.kltlaeLsrlrrqFvklnk 252
                 ++  + +l++++    t++e+++  r+F ++ k
  CCG92321.1 387 IN-GKRKLRIAKGsGTTVPEINEFLRRFDSVRK 418
                 22.333555555545788888888888866655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       3.1   1.7e+03      56      90 ..      48      91 ..      10     100 .. 0.62
   2 ?   13.1   0.7   0.00017     0.092      15     142 ..      89     219 ..      77     223 .. 0.54

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 3.1
      AAA_16 56 lrgkcdqlesa..........ipysalaqalareellrqlldeae 90
                +r  c++ +++          +p +++++++  + l++ l++e++
  CCG92321.1 48 VRDICEEVKQKalgtkvlesiRPGDQFIKIF-HDALIEYLASEKQ 91
                3333333322223322332225667788888.4488888877755 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00017
      AAA_16  15 alervrsgrpelvllsGesGvGKsslvrellralekd...ggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleealaavp 109
                   + + s rp  +ll G  G+GK++ + +l+  ++k+   ++ +++++  +  +ai+ ++ la++++   +++ +++e+ +a l+++ e+ ++   +v 
  CCG92321.1  89 EKQGLLSERPLRILLCGLNGSGKTTTAAKLA-LWCKKnkeRVGLVAADLMRP-AAIEQLTkLASQIDV-PVYAPEKEEKIEAFLSRALEQTKQDRLSVV 184
                 555677889999******************9.77777554444455555554.233333335555533.444444444444444444443333333444 PP

      AAA_16 110 elagaeasrllellkrllallsrderp..lvlvlD 142
                   + a++ +l e+l + l+l+ +   p  ++lv+D
  CCG92321.1 185 IYDTAGRLDLDEELLKELQLAYSVVLPqeVLLVID 219
                 44444444444444444433222222222666666 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00011     0.058       6      91 ..     104     191 ..     101     224 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00011
         Zot   6 tGapGsgKtsgavkkdllpalkegRkiitnidGlrlerieqvlgekvstarlirid..npegaetlkefakwat....idkgallviDEcqe 91 
                  G +GsgKt  a k  l  ++ ++R+     d +r  +ieq+++ + +    i++    pe++e++++f  +a      d+ +++++D +++
  CCG92321.1 104 CGLNGSGKTTTAAKLALWCKKNKERVGLVAADLMRPAAIEQLTKLASQ----IDVPvyAPEKEEKIEAFLSRALeqtkQDRLSVVIYDTAGR 191
                 699***********************99999999*******9999999....6666779*******99999987443344779999998876 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00017     0.088       4      38 ..     101     135 ..      99     146 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
                  EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase   4 ilvgGKGGVGKttvsaatavklsekgkkvllistD 38 
                  il+ G  G GKtt +a +a+++ +++++v l++ D
   CCG92321.1 101 ILLCGLNGSGKTTTAAKLALWCKKNKERVGLVAAD 135
                  7889999**********************999988 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00026      0.14      12      46 ..     108     142 ..     107     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00026
      AAA_31  12 GvGKTTtsvnlaaalaklgkkvLlvDlDpQanatt 46 
                 G GKTTt+ +la +  k++++v lv +D    a++
  CCG92321.1 108 GSGKTTTAAKLALWCKKNKERVGLVAADLMRPAAI 142
                 99***********************9997666665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00016     0.084      21      73 ..      84     148 ..      44     221 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00016
                 .............TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSH...HHHHHHHHH CS
      ResIII  21 s...........krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprk...slleqtlee 73 
                 +           +r  r+l+    G+GKT +aakl+  ++k+++  ++ +++  +   + +eq+ + 
  CCG92321.1  84 EylasekqgllsERPLRILLCGLNGSGKTTTAAKLALWCKKNKE--RVGLVAADLmrpAAIEQLTKL 148
                 04444555666578889999999*************99999744..777777644333555555544 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0    0.0002      0.11       1      19 [.     101     123 ..     101     220 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0002
      AAA_18   1 IlltGtpGvGKttlakeL....s 19 
                 Ill+G  G+GKtt a  L    +
  CCG92321.1 101 ILLCGLNGSGKTTTAAKLalwcK 123
                 99**************9944431 PP

>> NBD_C  Nucleotide-binding C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00022      0.12      10     114 ..     140     242 ..     107     251 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00022
                 HHHHHHHHHCTS.CTSEEEEEEHHHHH.SCCTCHHHHHHHHHHHHHCCTCCTSSEEEEEECTGHHHH..HH---HHCCC-HHHH.......HHHHHHHH CS
       NBD_C  10 kTtaQlaallkegesvpvleldveall.edeesaeaeieraleqaeeallaagkdvlvytsrepedvr.daleslqaelglera.......geriaaal 99 
                 ++ +Ql++l+         ++dv   + e+    e+ ie+ l++a+e+ ++++ +v++y ++++ d++ + l++lq ++ +           ++ ++  
  CCG92321.1 140 AAIEQLTKLAS--------QIDVPVYApEK----EEKIEAFLSRALEQTKQDRLSVVIYDTAGRLDLDeELLKELQLAYSVVLPqevllviDSATGQKG 226
                 55567777752........57777776334....445666666666663334789************74447777776665544556555544555555 PP

                 HHHHHHHHHC.TECEE CS
       NBD_C 100 aeiarrlver.gvrrl 114
                 ++i+++ +e+ +v++l
  CCG92321.1 227 VDIVKAFIEKiPVSGL 242
                 5555555555555555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00018     0.097      21     103 ..     101     195 ..      90     211 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00018
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLae......elgi......eastiakllkrlkgrarlepgtllivDEagmvdtk 103
                  +l G  G+GKtt+ ++l+   +++++rv ++A      +++++      ++++      + + i+ +l+r  ++++ ++ +++i D ag +d +
  CCG92321.1 101 ILLCGLNGSGKTTTAAKLALWCKKNKERVGLVAADLMRPAAIEQltklasQIDVpvyapeKEEKIEAFLSRALEQTKQDRLSVVIYDTAGRLDLD 195
                 567899*************999999****999988766555554111222333355556666777777766667667777799999999988766 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00023      0.12      14     114 ..      91     205 ..      74     234 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
      ATPase  14 gGipegr..vvlitGepGtGKtifalqFlikgaekygepgvfvtveepa....edlrenakslGwdlekleeegklaiidasesaeesaee........ 98 
                 +G+ ++r   +l++G  G+GKt+ a++ ++   +k  e++ +v+ +       e+l + a+++++ + + e+e+k+       s++ ++++        
  CCG92321.1  91 QGLLSERplRILLCGLNGSGKTTTAAKLALWC-KKNKERVGLVAADLMRpaaiEQLTKLASQIDVPVYAPEKEEKIEAF---LSRALEQTKqdrlsvvi 185
                 6666665224899**************99987.555999999**99877678888888888999888888888776433...22222222212344566 PP

      ATPase  99 ...kdkedl.eelieelaea 114
                     ++ dl eel++el+ a
  CCG92321.1 186 ydtAGRLDLdEELLKELQLA 205
                 65544444423455555444 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       6.2   3.3e+03      94     112 ..      66      84 ..      35      93 .. 0.62
   2 ?   11.2   0.0   0.00049      0.26       2      44 ..      98     140 ..      97     151 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6.2
                 HHHHCHTEEEEEEEE--HH CS
  APS_kinase  94 elleealkfievfvdtple 112
                 e ++ + +fi++f d+ +e
  CCG92321.1  66 ESIRPGDQFIKIFHDALIE 84 
                 3333345677777776665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00049
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTT CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhg 44 
                 ++ ++l Gl gsGK+t a +l+   ++++ +v l+  d +R  
  CCG92321.1  98 PLRILLCGLNGSGKTTTAAKLALWCKKNKERVGLVAADLMRPA 140
                 66799****************9999999999988888888865 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00039      0.21      11      35 ..      95     119 ..      86     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00039
                 .TTEEEEEEEESTTSSHHHHHHHHH CS
         Arf  11 kkkelrilllGLDnaGKtTilkklk 35 
                 +++ lrill GL ++GKtT   kl 
  CCG92321.1  95 SERPLRILLCGLNGSGKTTTAAKLA 119
                 48999**************998886 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00076       0.4      13      61 ..     100     152 ..      96     222 .. 0.71
   2 ?   -1.2   0.0         5   2.7e+03      38      53 ..     355     370 ..     347     424 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00076
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkei 61 
                 ++ + G nG+GK+t ++ la   k++++++ l  +dl +    ++l++l ++i
  CCG92321.1 100 RILLCGLNGSGKTTTAAKLALWCKKNKERVGLVAADLMRpaaiEQLTKLASQI 152
                 57799**********99998888888888766666665544444455555544 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 5
                 SEEEEEETTCEGGGB- CS
                 xxxxxxxxxxxxxxxx RF
    ABC_tran  38 teGeilldgkdlkeqe 53 
                  +G+i++d+k+lk++e
  CCG92321.1 355 GKGQIEIDDKKLKRIE 370
                 5799999999999822 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       7.9   4.2e+03      19      69 ..      39      88 ..      36      97 .. 0.61
   2 ?   11.6   0.0   0.00047      0.25       1      80 [.     100     188 ..     100     196 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7.9
      AAA_28 19 Laar.gypvvpEaareileeklakgedalpwvedllafaervleeqleeeaa 69
                Laa+  y+vv+++  e+ ++  a g++ l++ +   +f + + ++ +e +a+
  CCG92321.1 39 LAADvHYQVVRDICEEVKQK--ALGTKVLESIRPGDQFIKIFHDALIEYLAS 88
                55555666666666666533..555566777777778877777777766655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00047
      AAA_28   1 kivitGgestGKTtlleaLa.....ar.gypvv.pEaareileeklakgedalpwv...edllafaervleeqleeeaaaaankvlfcDr 80 
                 +i + G  ++GKTt++++La     ++  +  v ++ +r    e+l k   +++      ++ +  e++l  +le+ ++ +   v+++D+
  CCG92321.1 100 RILLCGLNGSGKTTTAAKLAlwckkNKeRVGLVaADLMRPAAIEQLTKLASQIDVPvyaPEKEEKIEAFLSRALEQTKQ-DRLSVVIYDT 188
                 68999***************99865222333444889888887777666655553321234444444455444444333.4556666666 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.0    0.0019         1       3     151 ..     101     248 ..      99     262 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0019
                 EEEEESTTCCHHHHHHHHH..CT--SS-EEEEESS-SSCHCCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHH..TT-SEEEEEECT.TTTH CS
        cobW   3 tvltGflGsGKTtLlnhll..enraglklavivNefgevsiDaellretgveivelenGciCctlredllkelealeere..erldviliEttG.laeP 96 
                 ++l+G  GsGKTt   +l    +++++++ ++  ++       + +++ ++ + ++         +e++ + l++ +e+   +rl+v++  t G l   
  CCG92321.1 101 ILLCGLNGSGKTTTAAKLAlwCKKNKERVGLVAADLMRP----AAIEQLTKLASQIDVPVYAPEKEEKIEAFLSRALEQTkqDRLSVVIYDTAGrLDLD 195
                 679999********99999888889999**999999842....33333334445555555555555555555544444433456888888888855555 PP

                 HHHHTTSHHH.HHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HH CS
        cobW  97 apvafteeel.ksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtD 151
                  ++ ++e +l  s +  + v+ v+D++   +++ +i + + +++ ++ l +l+K D
  CCG92321.1 196 EEL-LKELQLaYSVVLPQEVLLVIDSATG-QKGVDIVKAFIEKIPVSGL-ILSKFD 248
                 555.4544440456666778888888554.7888888888888888765.567776 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.0    0.0022       1.1       3      29 ..     101     127 ..      99     247 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0022
                 EEEEC-TTTCHHHHHHHHHHHHCTS-S CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegkl 29 
                 ++l G +GsGKTt ++klal  +++k 
  CCG92321.1 101 ILLCGLNGSGKTTTAAKLALWCKKNKE 127
                 7899**************998777764 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0012      0.62       2      33 ..     104     135 ..     103     154 .. 0.89
   2 ?   -2.5   0.0       6.6   3.5e+03      85     103 ..     172     193 ..     156     236 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrsvavvNLD 33 
                 +G  GsGKtt   +l+ ++++++ +v +v  D
  CCG92321.1 104 CGLNGSGKTTTAAKLALWCKKNKERVGLVAAD 135
                 7999********************99998655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.6
  ATP_bind_1  85 eleke.ed..dyllfDtPGQie 103
                 +le+  +d  + +++Dt G + 
  CCG92321.1 172 ALEQTkQDrlSVVIYDTAGRLD 193
                 3333322234556666655443 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2     0.003       1.6       9     119 ..      94     201 ..      88     217 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.003
     Pox_A32   9 LlkkpFrlalvGgsGsGktvyLlsLlrtlvkkykhifLltp.vknseYdkyvwPdhinkvtseeeleYsLsatkekieklakkeknqk.eaerfLlilD 105
                 L ++p r+ l G  GsGkt+    L     k+   + L+ + ++ ++       + ++k++s+ ++     +  ekie +  ++ +q  ++   ++i+D
  CCG92321.1  94 LSERPLRILLCGLNGSGKTTTAAKLALWCKKNKERVGLVAAdLMRPA-----AIEQLTKLASQIDVPVYAPEKEEKIEAFLSRALEQTkQDRLSVVIYD 187
                 678999*************9888887766666666666554333332.....23556677777777767777778888887777665514445577888 PP

     Pox_A32 106 DlGdkqtksktLle 119
                   G +++ ++ L e
  CCG92321.1 188 TAGRLDLDEELLKE 201
                 88888777776655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.2    0.0022       1.2      36     150 ..     101     220 ..      91     228 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0022
      AAA_25  36 allaGapgtGKttlaldlalavatGkpwlg................pvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfa 118
                 +ll+G  g+GKtt a  lal + + k+  g                +    q+ V +++ E  e  ++  l++++e+   ++rl v+ +++ ++l+L  
  CCG92321.1 101 ILLCGLNGSGKTTTAAKLALWCKKNKERVGlvaadlmrpaaieqltK-LASQIDVPVYAPEKEE-KIEAFLSRALEQT-KQDRLSVVIYDTAGRLDL-- 194
                 799****************9888777666777777777666664422.1367777777777777.7777777777774.556666665544433333.. PP

      AAA_25 119 kdrggtlltadvdaleaaieevegvrlvviDp 150
                    +++ll++   +l+  +   ++ +l+viD+
  CCG92321.1 195 ---DEELLKEL--QLAYSVVL-PQEVLLVIDS 220
                 ...55555554..56666555.5666666665 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.048        25       5      24 ..     100     119 ..      96     155 .. 0.86
   2 ?    6.2   0.1     0.012       6.3      43     102 ..     175     237 ..     161     245 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.048
                 EEEEE-STTSSHHHHHHHHH CS
       SRPRB   5 avllvGlsdsGKTslftrLt 24 
                 ++ll Gl  sGKT+   +L 
  CCG92321.1 100 RILLCGLNGSGKTTTAAKLA 119
                 69***********9988886 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.012
                 G...GGTT-SEEEETT-GCCSHHHHHHHHHHGGE...EEEEEEEETTS-HHHHHHHHHHHHHH CS
       SRPRB  43 vksekgskltliDfPGheklrqklleklkakssl...kglvfvvDStidpkevkevAEllyei 102
                  ++++  ++ + D  G   l  +ll++l+   s+   + ++ v+DS+  +k v  v  ++ +i
  CCG92321.1 175 QTKQDRLSVVIYDTAGRLDLDEELLKELQLAYSVvlpQEVLLVIDSATGQKGVDIVKAFIEKI 237
                 455667788899*************99876666323479************999888777665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   7.6     0.086        46      23      50 ..     102     127 ..     100     428 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.086
      AAA_23  23 lItGpNGaGKTTildAiklaLygetprl 50 
                 l++G NG+GKTT   A klaL+ +++++
  CCG92321.1 102 LLCGLNGSGKTTT--AAKLALWCKKNKE 127
                 89**********6..5577777764433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 3018.19
//
Query:       CCG92322.1  [L=85]
Description: 30S ribosomal protein S16 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-21   76.5   0.4    1.5e-21   76.2   0.4    1.1  1  Ribosomal_S16  Ribosomal protein S16


Domain annotation for each model (and alignments):
>> Ribosomal_S16  Ribosomal protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.4   8.6e-26   1.5e-21       1      62 []       9      68 ..       9      68 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 8.6e-26
                   EESCTTCEEEEEEEEETTSSTTSSESEEEEEEETTTTSSTS.SEEE-HHHHHHHHHTTEEEE CS
  Ribosomal_S16  1 RfGrknrPfYrivvadsrkprdgrpiEklGtYdPlakkkekkevelneerikyWlgvGAqpt 62
                   R G+k rP+Yrivva++r p +g+++E++G+Y+P+a++ +    +l+++r++yWl++GA+pt
     CCG92322.1  9 REGKKGRPVYRIVVAEKRWPANGKYLEEVGFYNPMAEEPN--FYRLKMDRVEYWLEKGAKPT 68
                   89********************************887655..69*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 658.95
//
Query:       CCG92323.1  [L=235]
Description: tRNA (guanine-N(1)-)-methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-65  218.4   0.0    8.1e-65  218.2   0.0    1.0  1  tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase


Domain annotation for each model (and alignments):
>> tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.2   0.0   4.5e-69   8.1e-65       2     195 .]      23     220 ..      22     220 .. 0.98

  Alignments for each domain:
  == domain 1  score: 218.2 bits;  conditional E-value: 4.5e-69
                  GGSHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEETSSHHHHHHHHHHHCCGH..HCGG-TTEEEESSCGGHHHHCCCHHHCGGGEEEEETTTSSBECC CS
  tRNA_m1G_MT   2 kkasekelvslevqllrdytanrrntvddelygggagmvlkaepelealesv..ntekwkvilltptGkkftqelaeeLsekeklvylcgdyegvder 97 
                  k+a++k+l++l  + lrdy+ ++++tvdd++yggg+gmvlk ep+++a+e++    ek +v++++p+G +f+q++a +L+++++l+++cg+yegvd+r
   CCG92323.1  23 KQAIKKGLLRLFIHQLRDYARDKHRTVDDRPYGGGPGMVLKCEPIFDAMEAIgyDKEKDTVVFPSPSGFQFSQKMAANLASQQRLIFICGQYEGVDQR 120
                  89**************************************************65448999************************************** PP

                  GGTTSSE.EEEEESSSSTTCSTTHHHHHHHHHHHHTTTC..EEB-S-CCC...CHCTS..CTTSEHHTEHHHHHHHHHCCCTTTHHHHHHHHHHHSCS CS
  tRNA_m1G_MT  98 vdddkvd.eysIGdfVlkggekgalvlidavkrllaGvl.ntaslpedsfsnrllekpnytrpltlrglkVpeiLlsgnhakienWrlkealertvpr 193
                  v+d+ vd e+++Gd++l++g +++lv+id+v+rl++Gvl n++s +++sf++ lle+p+ytrp+++r  +Vpe+Llsgnh++i+ Wr+  a e+t + 
   CCG92323.1 121 VIDQLVDfEICVGDYILSNGTIATLVIIDSVVRLIPGVLgNENSVIDESFKDMLLEAPQYTRPRKFRDWEVPEVLLSGNHKAINLWRKRLAEEKTEKF 218
                  ***********************************************************************************************998 PP

                  XS CS
  tRNA_m1G_MT 194 Rk 195
                  Rk
   CCG92323.1 219 RK 220
                  86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1816.99
//
Query:       CCG92324.1  [L=114]
Description: 50S ribosomal protein L19 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-42  142.2   2.8      6e-42  142.1   2.8    1.0  1  Ribosomal_L19  Ribosomal protein L19


Domain annotation for each model (and alignments):
>> Ribosomal_L19  Ribosomal protein L19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   2.8   3.3e-46     6e-42       1     107 [.       2     109 ..       2     113 .. 0.96

  Alignments for each domain:
  == domain 1  score: 142.1 bits;  conditional E-value: 3.3e-46
  Ribosomal_L19   1 nlikeiekeqlkkdlpefkvGdtvkVkvkikegkkeRiqafeGvviarkgkgisetftvRkisegvgvervfplhspkiekievvrr.gkvrrakL 95 
                    nli++ie++ql+kd+p+f+ Gd v+V +k++eg+keRiq+f+G+vi+rkg+gi+e+f+vRkis+g+g+er f+lhsp ieki + ++  k+rra+L
     CCG92324.1   2 NLIEKIESSQLRKDIPSFSRGDFVTVMTKVVEGEKERIQSFSGIVISRKGRGINESFIVRKISYGEGIERNFKLHSPAIEKIIIEKKaPKIRRARL 97 
                    689*********************************************************************************977369****** PP

  Ribosomal_L19  96 yYLrelkgkaar 107
                    yYLr++kgk+a 
     CCG92324.1  98 YYLRKQKGKEAM 109
                    *********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 767.91
//
Query:       CCG92325.1  [L=212]
Description: Ribonuclease HII [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-31  108.4   0.0    5.4e-31  108.0   0.0    1.1  1  RNase_HII  Ribonuclease HII


Domain annotation for each model (and alignments):
>> RNase_HII  Ribonuclease HII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0     3e-35   5.4e-31       1     196 [.      21     199 ..      21     202 .. 0.90

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 3e-35
                 EEEEEE-TT-SBS-EEEEEEEECGHHHHHHHCTTGTTGTTS-HHHHHHHHHHHHSEEEEEEE-HHHHH.HHTTTS-HHHHHHHHHHHHHHHHHHTCEEC CS
   RNase_HII   1 iGiDEaGrGpvlGplvvaavavekereeelkklgvkDSKkLskqkreeLaklikkkiekrklvaeeikyaseneinlneikaaltlaviklleklgvkv 99 
                 +GiDE+GrG+++Gp+v+aav+++ e      +  +kDSK   ++kre + + +     k+  +++ + + s++ei++ ++++a++la+++++  l v++
  CCG92325.1  21 AGIDEVGRGALAGPIVAAAVILPLELP---FHQSLKDSKCVGEKKRESVVRWLI----KEIEIKYGLGFSSVEEIEKCNVHKASLLAMRRAVCCLDVEP 112
                 6*********************99987...5789*******************9....66667777888999*************************** PP

                 CECCCE--SSHHHHHHHHHHHHCCEEEEETTGGGT-HHHHHHHHHHHHHHHHHHHHHHHHCS..H.--TTSSTTSHHHHHHHHHHHHHS--TTB-TTSH CS
   RNase_HII 100 deilvdgvttpeslkkkleqiikikvtvekkadekyllvaaASiiAkverdeelellkrkpg..tldkgsGyasdektrallkkgatsklpdivrlsfk 196
                 d  l+dg+ ++  ++     i +        +d+k++ +aaAS +Akv rd+ + +l   ++  ++dk++Gy++  + +a++ +g+ +    ++r sf 
  CCG92325.1 113 DLLLIDGIWKLPGIEITSIPIAQ--------GDAKVASIAAASLVAKVNRDLWMTKLGSLYRnyGWDKNKGYGTPSHFAAIKTNGFSP----FHRKSFF 199
                 ******99887766666666665........********************77777776666689***********************....9999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1474.80
//
Query:       CCG92326.1  [L=59]
Description: hypothetical protein MFUM_620001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 448.21
//
Query:       CCG92327.1  [L=156]
Description: hypothetical protein MFUM_630001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
          5    7.4  11.0       0.17   12.1   3.5    2.0  2  DDE_Tnp_1_6  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_6  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.9     0.064   1.1e+03      58      83 ..      29      53 ..      22      69 .. 0.63
   2 ?   12.1   3.5   9.6e-06      0.17      57      99 ..      69     111 ..      61     119 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.064
  DDE_Tnp_1_6 58 selaekarerikseegkaeykkRait 83
                 +e++++a++ ++ e+ ++e ++ + t
   CCG92327.1 29 HEYLRAAKAAVEEEQLQKEKQRER-T 53
                 455566666666665555544432.3 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 9.6e-06
  DDE_Tnp_1_6  57 lselaekarerikseegkaeykkRaitvEgvfaqikrnlglrr 99 
                  +se +++  +++k e+ +a  +kRa  vE+++a+i+++l++rr
   CCG92327.1  69 VSEQRAEPDKERKEEKQQASQSKRALSVEETVAKIYEELRIRR 111
                  57888888999****************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2384  (0.132969); expected 358.6 (0.02)
Passed bias filter:                      777  (0.0433376); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1119.01
//
Query:       CCG92328.1  [L=79]
Description: hypothetical protein MFUM_630002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 567.09
//
Query:       CCG92329.1  [L=205]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.53   10.3   6.7        7.8    6.5   6.7    2.4  1  DUF389    Domain of unknown function (DUF389)


Domain annotation for each model (and alignments):
>> DUF389  Domain of unknown function (DUF389)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.7   0.00044       7.8       4      55 ..      19      68 ..      18     197 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00044
      DUF389  4 sPlmgpilaiafglvigdrkllrrglknlliglllallvgflfglllplkvl 55
                 P mg ++++a++l  ++ + + r++++ll+g +l++   f+f+lll  +++
  CCG92329.1 19 NPAMGWLFSVALALQHNSFRWIIRSAIALLTGHFLSIGSYFAFFLLL--GKW 68
                599***********************************999999653..222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1472.66
//
Query:       CCG92330.1  [L=467]
Description: SBP56, 56kDa selenium binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-187  623.0   0.0   3.3e-187  622.8   0.0    1.0  1  SBP56     56kDa selenium binding protein (SBP56)


Domain annotation for each model (and alignments):
>> SBP56  56kDa selenium binding protein (SBP56)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  622.8   0.0  1.8e-191  3.3e-187       2     454 .]       4     465 ..       3     465 .. 0.97

  Alignments for each domain:
  == domain 1  score: 622.8 bits;  conditional E-value: 1.8e-191
       SBP56   2 kadPg.yasPkeaikapreklayvaaleant......eiekpDalavvdvdpesetyskvvhrvelpnlgdelhhfGWnaCss..cha.edaskerryl 90 
                 + dP+ y+s + a++ap+eklayv+a+++++      +++++D+lav+dvdp+s++ys++++ +e+p+ gdelhh GWnaCss  c++  +++ erryl
  CCG92330.1   4 TIDPTfYPSARLAMDAPPEKLAYVVAFNPKAlssdhpNKDRGDVLAVIDVDPDSKSYSQILSLLEVPYSGDELHHYGWNACSSalCPNaPHPHLERRYL 102
                 579***********************9987533322356789*******************************************99999********* PP

       SBP56  91 ivPglrssriyvvdtktdprkpklvkviepeevaektglsrphtvhClpegeilisalgdaeGegkggillldketfevkgrWekdrekqelaYDfwyq 189
                 ivPglrssriy++dtk+dp  p++ k+iepe+++++tg+srphtvhC+p+g i+isalg+++Geg+ggi+++d+ +fe+ g We+dr++q++aYDfw++
  CCG92330.1 103 IVPGLRSSRIYIIDTKPDPSFPSISKIIEPETLMKRTGYSRPHTVHCGPDG-IYISALGNNKGEGPGGIFVMDHFSFEPLGMWEIDRGPQYYAYDFWWH 200
                 ***************************************************.*********************************************** PP

       SBP56 190 lrkdvmvsseWgaPkafekGldledleegkyGkrlhvwdleerkllqtidlgeegqlvlevrflhdPkkaegfvgvv.....Lsssvfrfykeedekwe 283
                  ++d+++sseWg+P ++e+G+  + l +g+yG++lhvwdl++rk+l+++dlg+e q++levr++hdP++ +gf+gvv     Ls+sv+ ++k e+++w+
  CCG92330.1 201 INQDILLSSEWGTPPMIENGVVGSLLMDGQYGHSLHVWDLRKRKHLKALDLGNEYQMALEVRPAHDPRRLYGFLGVVisrkdLSASVWLWFK-EKNDWQ 298
                 ********************************************************************************************.999*** PP

       SBP56 284 aekvieipakkvegeelpel.......pglvtDillslDDrflyvsnWltGdlrqydisdpkkPkltgqvrlGGiirkaehpavkgrkleggPqmvels 375
                 ++kvieipa k+++e+lp+l       p+lvtDi+lslDD++lyvs+W+tG+l++yd+sdp++P+l g +++GGi+ +++hp+  ++ l ggPqmve+s
  CCG92330.1 299 IKKVIEIPALKADPEALPPLlqpfgmvPPLVTDIDLSLDDKYLYVSCWGTGELHKYDVSDPFHPVLEGCIKIGGIVDRTPHPKKPQKPLLGGPQMVEIS 397
                 *************************************************************************************************** PP

       SBP56 376 lDGkrlYvtnsLysawddqfypelvkkgsvllkidvdtekGglsldknflvdfgkepegparahevryegGDassDiyi 454
                 +DGkr+Y+tnsLy awd+qfyp ++  +++l+ki++++     +l+k+f+v+f        r+h+vr++gGD+s+D+++
  CCG92330.1 398 RDGKRIYLTNSLYWAWDEQFYPAGI--EGWLVKIKAESF----ELEKDFFVEFPG-----FRPHQVRLQGGDSSTDSFC 465
                 *************************..9******99876....9**********9.....9****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3205.79
//
Query:       CCG92331.1  [L=87]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 678.58
//
Query:       CCG92332.1  [L=42]
Description: hypothetical protein MFUM_670001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 332.13
//
Query:       CCG92333.1  [L=143]
Description: hypothetical protein MFUM_670002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-11   42.1   0.3    9.9e-11   41.7   0.3    1.1  1  UPF0102   Uncharacterised protein family UPF0102


Domain annotation for each model (and alignments):
>> UPF0102  Uncharacterised protein family UPF0102
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.3   5.5e-15   9.9e-11       3      79 .]      32     120 ..      30     120 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 5.5e-15
                 HHHHHHHHHTT-EEEEEEEEETTEEEEEEE..TTEEEEEEEEE-......-------HHHHHHHHHHHHHHH..........EEEEEEE CS
     UPF0102   3 elaaeyLekkgyeilernwrcragEiDiia..tevlvfvEVKtRssekfgspaeavtprKqrrlrraaeayl..........rfDvvav 79 
                 +la ++L+k g+ il rn+  +   +D+++  +++lvfv VK R  + f++    ++++ + rl++aa  yl          rfD v++
  CCG92333.1  32 KLATSFLRKIGFIILLRNITIEGYKLDLVCreKQTLVFVVVKGRYLAIFEEWHIRIDQKEKSRLIAAAYGYLkllkkasvpfRFDTVEI 120
                 5899***************99999********889*********988999***********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1122.11
//
Query:       CCG92334.1  [L=39]
Description: hypothetical protein MFUM_680001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       162  (0.00903564); expected 358.6 (0.02)
Passed bias filter:                      151  (0.00842211); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 315.84
//
Query:       CCG92335.1  [L=39]
Description: hypothetical protein MFUM_680002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.25s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 312.42
//
Query:       CCG92336.1  [L=32]
Description: hypothetical protein MFUM_680003 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        79  (0.00440627); expected 358.6 (0.02)
Passed bias filter:                       66  (0.00368119); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 259.04
//
Query:       CCG92337.1  [L=321]
Description: UDP-glucose 4-epimerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-59  200.6   0.0    3.2e-59  200.3   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.7e-54  185.5   0.0    1.6e-53  182.2   0.0    1.9  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.8e-12   46.9   0.0    1.2e-11   44.1   0.0    1.8  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    4.4e-12   45.7   0.0    2.1e-11   43.5   0.0    1.9  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    6.2e-12   45.2   0.0    8.4e-12   44.8   0.0    1.1  1  RmlD_sub_bind    RmlD substrate binding domain
    1.8e-08   34.2   0.0    5.3e-08   32.7   0.0    1.7  2  NmrA             NmrA-like family
    1.1e-06   28.7   0.0    1.7e-06   28.1   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
    7.6e-06   25.3   0.0      0.011   14.9   0.0    2.6  2  NAD_binding_4    Male sterility protein
    7.7e-05   22.2   0.0    0.00012   21.6   0.0    1.3  1  adh_short        short chain dehydrogenase
     0.0094   16.2   0.0      0.019   15.2   0.0    1.4  1  TrkA_N           TrkA-N domain
  ------ inclusion threshold ------
      0.029   14.3   0.8       0.11   12.5   0.8    2.0  1  KR               KR domain
      0.033   13.7   0.2      0.057   13.0   0.2    1.3  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.3   0.0   2.2e-62   3.2e-59       1     241 []       3     246 ..       3     246 .. 0.94

  Alignments for each domain:
  == domain 1  score: 200.3 bits;  conditional E-value: 2.2e-62
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnll 99 
                 +lVtG++G+iGs  v++l ++gy+vi+ld+ls+++ +a + ++ ++++d+ dr+ l  +f +e+p+avih+Aa + va+s+ dp+ ++++n+++  nll
  CCG92337.1   3 VLVTGGAGYIGSICVERLIDRGYQVIVLDNLSEGHIKAVESRALFIKGDIADRNLLLSIFMNEKPQAVIHFAAKALVAESMRDPSLYFQNNVAYGINLL 101
                 79*****************************999999999999******************************************************** PP

                 HHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT....S-TTSTTSHHHHHHHHHH CS
   Epimerase 100 eaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr....ngegevsrvipalirkil 194
                 +a+ ++g+kr++f s++++YG ++++p +e+    p +p +pY+ +K ++ek++e y++ +g++ +i+r+fn  G+     +++++++++ip++++ +l
  CCG92337.1 102 DAMVAYGLKRIVFSSTCSIYGSVTKVPIDENF---PANPENPYGESKFLFEKILEWYRKIHGISPVIFRYFNAAGATlyhgEHHRKETHLIPRILQAAL 197
                 ********************************...******************************************8876666678888887666655 PP

                 TTS.SSEEEET......TST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 195 egk.qevtllg......dgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                      +v ++g      dg+a Rd+++v D+++a++ +le++ +g    ++n+G
  CCG92337.1 198 G-IlSKVEIYGvdyptaDGSAIRDYIHVVDLVDAHIKALENPFEG----VFNLG 246
                 4.4599***********************************6664....67776 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.2   0.0   1.1e-56   1.6e-53       1     330 [.       4     307 ..       4     309 .. 0.84

  Alignments for each domain:
  == domain 1  score: 182.2 bits;  conditional E-value: 1.1e-56
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG+aG+iGs  +e+L+++gy+v++++++s+    g+i++++        ++  ++kgD+ D++ l +++ + +p++v+++AA+  V++s+ +P 
     CCG92337.1   4 LVTGGAGYIGSICVERLIDRGYQVIVLDNLSE----GHIKAVE--------SRALFIKGDIADRNLLLSIFMNEKPQAVIHFAAKALVAESMRDPS 87 
                    9***********************99988765....4566654........3557***************************************** PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEEST..TS-T CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesp..rrge 190
                     ++++nv   ++LL+a+ a+gl+   r++++St  +YG+v++vp++E+ p +P++PY+ +K   + i + yr+ +g+  v+ ++fn  +   ++ge
     CCG92337.1  88 LYFQNNVAYGINLLDAMVAYGLK---RIVFSSTCSIYGSVTKVPIDENFPANPENPYGESKFLFEKILEWYRKIHGISPVIFRYFNAAGAtlYHGE 180
                    *********************96...9***********************************************************6665223444 PP

                    T..SCCCHHHHHHHHHHTTS.-C-EECT......TTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH.... CS
  GDP_Man_Dehyd 191 t..fvtrkitravarialgk.qevlylG......nldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkge 277
                    +    t++i+r++ ++alg   +v ++G      +++a+Rd+ hv D v+a  ++l++     +++++ + +sv e++e+a + + +         
     CCG92337.1 181 HhrKETHLIPRIL-QAALGIlSKVEIYGvdyptaDGSAIRDYIHVVDLVDAHIKALENPFEGVFNLGSAKGYSVLEVIEAARAITAM--------- 266
                    3213344444444.3444431333334433444499999******************999999999999999999999965443332......... PP

                    ........TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHH CS
  GDP_Man_Dehyd 278 eevgrakesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvr 330
                                 ++     +r g+   l+++ +ka e  gWkp+++++ +++
     CCG92337.1 267 ------------PIPAVVCSRRTGDPPILVANFRKAFETFGWKPNYDLNAIIQ 307
                    ............34455567999*************************99987 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   8.3e-15   1.2e-11       1     156 [.       4     151 ..       4     160 .. 0.83
   2 ?    0.6   0.0      0.15   2.3e+02     204     230 ..     210     236 ..     178     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 8.3e-15
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleeal..egvdvvihlaslvdvag.kltedeimkvnvkGT 96 
                 +vtGgaG++G+  v++L++++   +v vlD   + ++  ++ +++   +i+gD+ d + l      e+ ++vih a+   va  +     + + nv   
  CCG92337.1   4 LVTGGAGYIGSICVERLIDRG--YQVIVLDNLSEGHI--KAVESRAL-FIKGDIADRNLLLSIFmnEKPQAVIHFAAKALVAEsMRDPSLYFQNNVAYG 97 
                 69*******************..59999998777777..44555444.9**********99886225568******999999845556667899***9* PP

   3Beta_HSD  97 rnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEkl 156
                  n+l+a v  g++++v+ S++++ g  +++ +i    E  + + +++++y esK l Ek+
  CCG92337.1  98 INLLDAMVAYGLKRIVFSSTCSIYGS-VTKVPID---E--NFPANPENPYGESKFLFEKI 151
                 **********************9999.5555554...4..56778899999999988876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.15
   3Beta_HSD 204 fkigdeevlsdrvYvgNvawahilAar 230
                 + ++d +++ d++ v  +++ahi A  
  CCG92337.1 210 YPTADGSAIRDYIHVVDLVDAHIKALE 236
                 6689999****************9875 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   1.4e-14   2.1e-11       1     156 [.       3     159 ..       3     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 1.4e-14
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      vlvtG++G iGs  v++++++  + i+l + +E ++ ++e++         l      + gd++d++ l +++ + k+++v+h AA   V    
       CCG92337.1   3 VLVTGGAGYIGSICVERLIDRGYQVIVLDNLSEGHIKAVESRA--------LF-----IKGDIADRNLLLSIFMNEKPQAVIHFAAKALVAESM 83 
                      8***************************99****999999875........32.....35********************************** PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE............GGG..SS--SHHHHHHHHHHHHHHHGGG-- CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliSt............DKA..vnPtnvmGatKrlaekllqalakes 156
                      + p   +++Nv    n+++a +++g k++v+ St            D    +nP n +G +K l ek+l  ++k +
       CCG92337.1  84 RDPSLYFQNNVAYGINLLDAMVAYGLKRIVFSSTcsiygsvtkvpiDENfpANPENPYGESKFLFEKILEWYRKIH 159
                      ********************************99444444433333221336888888888888888888887776 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   5.6e-15   8.4e-12       1     137 [.       1     153 [.       1     168 [. 0.94

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 5.6e-15
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre...............eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaea 81 
                    mk+lvtG+ G +Gs  +++l  +g++v+ l++                + d++d++ + +++ + kp++v++ AA   v +   ++ + ++ n+  
     CCG92337.1   1 MKVLVTGGAGYIGSICVERLIDRGYQVIVLDNLseghikavesralfiKGDIADRNLLLSIFMNEKPQAVIHFAAKALVAESMRDPSLYFQNNVAY 96 
                    89****************************77779********************************************999999*********** PP

                    HHHHHHHHHHCT-E.EEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHH CS
  RmlD_sub_bind  82 vealAeaaaavgal.LihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavl 137
                      +l +a  a+g + +++ St  ++   +k p  e+ + +P n YG++K + E+  +
     CCG92337.1  97 GINLLDAMVAYGLKrIVFSSTCSIYGSVTKVPIDENFPANPENPYGESKFLFEKILE 153
                    ***********98548999999*****************************999876 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   3.5e-11   5.3e-08       1     104 [.       3     119 ..       3     135 .. 0.85
   2 ?   -1.8   0.0       1.3   1.9e+03      39      85 ..     168     218 ..     162     229 .. 0.72

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 3.5e-11
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHH..TT-SEEEE---GG.............S-HHHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslveal..kgvdvvfsvtgfy.............skeiedgkk 84 
                 +lv+G++G++G+  v+ l+++g++v +l  ++++  +k+++++ + ++kgd+ d+++l +++  ++ ++v+   + +             ++++++g +
  CCG92337.1   3 VLVTGGAGYIGSICVERLIDRGYQVIVL-DNLSEGHIKAVESR-ALFIKGDIADRNLLLSIFmnEKPQAVIHFAAKAlvaesmrdpslyfQNNVAYGIN 99 
                 79**********************9765.67888888888776.7899*****9999999984434566666655556789999*************** PP

                 HHHHHHHHS-SEEEEEE--- CS
        NmrA  85 lvdAakeaGvkhfiySslgd 104
                 l dA ++ G k++++Ss  +
  CCG92337.1 100 LLDAMVAYGLKRIVFSSTCS 119
                 ****************9765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
                 HHHHSTTEEEES-TT..-HHHHHHHHTT-SEEEE---GG..S-HHHHHHHH CS
        NmrA  39 slkeaGvelvkgdld..dkeslvealkgvdvvfsvtgfy..skeiedgkkl 85 
                  +++aG++l +g+    +  ++ ++l+ + ++ s +++y  +  ++dg+++
  CCG92337.1 168 YFNAAGATLYHGEHHrkETHLIPRILQAALGILSKVEIYgvDYPTADGSAI 218
                 588899999999866225557888888888888888877665566666665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.1e-09   1.7e-06       1     108 [.       7     127 ..       7     160 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.1e-09
                     TTTSHHHHHHHHHHHHC-T-EEEEEETT..HHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-S..EEEES-.....--TCCHHHH......... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRn..peklaeleaeeglevvegdvtdvedlaealkgad..aVvsal.....ggggkdeeg......... 77 
                     G+ G +G+  v++l++rg ++v +l  n  + +++++e  +++  ++gd+ d + l + + +    aV+  +     +     e +         
      CCG92337.1   7 GGAGYIGSICVERLIDRG-YQVIVL-DNlsEGHIKAVE--SRALFIKGDIADRNLLLSIFMNEKpqAVIHFAakalvA-----ESMrdpslyfqn 92 
                     999**************5.**9666.553366888886..89*****************9765444776555244442.....222233345666 PP

                     ....HHHHHHHHHHCT--EEEEEEETTTTSGCGCH CS
  NAD_binding_10  78 ....aknivdaakeagvkRfvlvsaigvgdevpge 108
                          +n++da+ + g kR+v+ s+  ++ +v + 
      CCG92337.1  93 nvayGINLLDAMVAYGLKRIVFSSTCSIYGSVTKV 127
                     66889**********************99876543 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0     0.001       1.5       1      27 [.       5      29 ..       5      37 .. 0.87
   2 !   14.9   0.0   7.2e-06     0.011      55     203 ..      38     168 ..      25     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.001
                   EE-TTSHHHHHHHHHHHHHS-.TEEEE CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyl 27
                   +TG+ G++G++ +e+L+++    ++++
     CCG92337.1  5 VTGGAGYIGSICVERLIDRGY--QVIV 29
                   7****************9987..5555 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 7.2e-06
                    HHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--SS-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT- CS
  NAD_binding_4  55 lkelaerikvveGDlseprlGLseedlqelaeevdviihsaAtvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregev 147
                    +k +++r  +++GD+++ +l Ls        e+ +++ih aA+  + e++++    ++ Nv    ++l+   +   +  +++ ST  ++g  ++ v
     CCG92337.1  38 IKAVESRALFIKGDIADRNLLLSIFMN----EKPQAVIHFAAKALVAESMRDpslYFQNNVAYGINLLDAMVAYGLK-RIVFSSTCSIYGSVTK-V 127
                    346789999999999999999997655....45599********999999996666778888777777766656555.99****9666666662.2 PP

                    -SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE CS
  NAD_binding_4 148 eekvyeegekeekldederaklkglpntYeqsKalaEklvrearrrsglpvvivRp 203
                                     +++  ++ +n Y  sK+l Ek+++ +r+ +g+  vi+R 
     CCG92337.1 128 ---------------PIDENFPANPENPYGESKFLFEKILEWYRKIHGISPVIFRY 168
                    ...............3556777899*****************************96 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   8.2e-08   0.00012       3      62 ..       3      56 ..       1      64 [. 0.87

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 8.2e-08
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdre 62
                vlvtG+++ IG  ++++l+ +G++v+v+d+ +e        +k+ +++al+i++D++dr+
  CCG92337.1  3 VLVTGGAGYIGSICVERLIDRGYQVIVLDNLSEGH------IKAVESRALFIKGDIADRN 56
                9**************************99998866......45555579********986 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.3e-05     0.019       5      59 ..       8      62 ..       4      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.3e-05
                S-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTT CS
      TrkA_N  5 GlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgdatdeevLeeag 59
                G+G +G+  +e+L + g+ +v+v d+  e   ++ e  + +++gd +d+++L ++ 
  CCG92337.1  8 GAGYIGSICVERLIDrGY-QVIVLDNLSEGHIKAVESRALFIKGDIADRNLLLSIF 62
                89*************666.7********99999999999*************9875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.8   7.1e-05      0.11       3      31 ..       3      31 ..       2     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.1e-05
                EEEETTTSHHHHHHHHHHHHHHS-EEEEE CS
          KR  3 ylitGGlGgLGlelarwlaekgarhlvll 31
                +l+tGG+G +G   ++ l+++g + +vl 
  CCG92337.1  3 VLVTGGAGYIGSICVERLIDRGYQVIVLD 31
                69**********************99985 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   3.8e-05     0.057       3      44 ..       3      46 ..       1      56 [. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.8e-05
                    EEEE.--STTHHHHHHHHHHCTSEEEEE-S.-HHHHHHHCTTS- CS
  UDPG_MGDP_dh_N  3 isvi.GlGYvGlvtaavlaeighevigvDi.deekvdklnsgki 44
                    + v  G+GY+G ++   l  +g +vi++D+ +e ++++++s  +
      CCG92337.1  3 VLVTgGAGYIGSICVERLIDRGYQVIVLDNlSEGHIKAVESRAL 46
                    5555279**********************746778888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2033.28
//
Query:       CCG92338.1  [L=301]
Description: ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-25   89.9   9.8    1.6e-25   89.9   9.8    2.4  3  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2      0.08   1.4e+03     157     175 ..      22      40 ..      15      45 .. 0.57
   2 ?    0.8   0.2     0.019   3.4e+02     107     132 ..      72      97 ..      69     100 .. 0.89
   3 !   89.9   9.8   8.9e-30   1.6e-25       1     184 [.      97     301 .]      97     301 .] 0.94

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.08
  BPD_transp_1 157 gvlalviavlllnlvadil 175
                   +++ l ++++ll+l+  ++
    CCG92338.1  22 ITFSLFFLLVLLSLIGPWF 40 
                   3444445555555555555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.019
  BPD_transp_1 107 lppiitglilafggllggavlleflg 132
                   ++ i+ g++++fg  + g+++ +f+g
    CCG92338.1  72 FIRILFGARISFGVGFSGSLISLFIG 97 
                   667999******************98 PP

  == domain 3  score: 89.9 bits;  conditional E-value: 8.9e-30
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.............vilsilg.hlilpviillllsaapyvrlirraalrslpkdl 83 
                   g+  G++aa + ++k+d++++ l+++l+slP++v++i+l+++f               +   +   il ++ l+++ ++ ++r++r+++l   ++ +
    CCG92338.1  97 GVAYGSIAA-YAGGKIDRMMMQLVDLLYSLPVLVFVIVLIAIFenplrtflfhshlE-SLLPYsRIILLLVGLGFVEWLTMARVVRSRVLILKESLF 191
                   6888*****.*******************************************9742.333442566669999************************ PP

  BPD_transp_1  84 veaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis.............nggvlalviavll 167
                   v+aa++lG + ++i+ k+++Pn++  +i  l l+++ ++ + ++l+flg    lg    +++lg+ +s ++             +++ l l + ++ 
    CCG92338.1 192 VQAAKVLGQNSFKILLKHIFPNIAGLVIVYLTLTIPTVILEESFLSFLG----LGVEPPSSSLGSLLSDGAnainpvkiswwllFFPGLYLSLTLWS 284
                   *************************************************....***************999************************** PP

  BPD_transp_1 168 lnlvadilqrlldprvr 184
                   ln++  +l + ldp++r
    CCG92338.1 285 LNVFGEWLRDKLDPKTR 301
                   **************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2151.72
//
Query:       CCG92339.1  [L=305]
Description: ABC-type dipeptide/oligopeptide/nickel transport system, permease component (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-32  113.4  10.3      1e-32  113.4  10.3    1.6  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.3      0.48   8.6e+03     160     164 ..      16      20 ..       4      31 .. 0.44
   2 !  113.4  10.3   5.6e-37     1e-32       1     183 [.     112     302 ..     108     304 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.48
  BPD_transp_1 160 alvia 164
                    ++i+
    CCG92339.1  16 LFGII 20 
                   11111 PP

  == domain 2  score: 113.4 bits;  conditional E-value: 5.6e-37
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.........vilsilghlilpviillllsaapyvrlirraalrslpkdlveaar 88 
                   gi  G l+a++ nk++dk+ ++++ ++ s+Psfvla++ vlvf         + ++++   ilp++ l++ +   + rl+r+a+l++l +d++++a+
    CCG92339.1 112 GISSGCLSAFFWNKPFDKITQGITLMGISIPSFVLAPICVLVFaillrllppAGWGSIEKIILPAFCLGIPYGCVVSRLTRSAMLEVLHSDYIRTAK 208
                   566788889*******************************************9******************************************** PP

  BPD_transp_1  89 alGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   a+G+++  i++ + l++a++pii+  +  +++ll+g++++e +++ +G+g+++++  l++d+ + s g++l++ ++++l+nl+ad l  l+d+r+
    CCG92339.1 209 AKGLTESSILFVHGLKAAASPIIAYSGPLAANLLTGSMVIEQIFGISGMGSFFVDGVLNRDVFLVS-GVTLVYSLLLILFNLLADMLCLLFDKRI 302
                   ******************************************************************.**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2176.74
//
Query:       CCG92340.1  [L=117]
Description: Ribosome-binding factor A [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-20   72.3   0.0    4.5e-20   72.1   0.0    1.0  1  RBFA      Ribosome-binding factor A


Domain annotation for each model (and alignments):
>> RBFA  Ribosome-binding factor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   2.5e-24   4.5e-20       1     105 []       4     106 ..       4     106 .. 0.94

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 2.5e-24
                 TCHHHHHHHHHHHHHHHHHCT-HCCTGHHCEEEEEEESTTSSEEEEEEEESS-HHHHHHHHHHHHHTHHHHHHHHHHHC-SSSG-EEEEESSSTTTT-- CS
        RBFA   1 RqervaeliqrelseilqeelkdprlgklvtiteVkvsrDlskakVyvsvlgseeekeevlkaLkkaagflrrelakrlklrktPeLkFvlDesleqak 99 
                 R+ rv+e i+rels  +q+e++ + l   +ti+ V+ s+Dl+ a ++vs+++ +  +e++l  L++++++ ++ ++krl+ ++tP+L+F++D+sl++++
  CCG92340.1   4 RAIRVSEVIRRELSWCFQREVELEGL--VLTISAVETSADLKEASIFVSLFDASIPEENLLMILNRHRNEWQKWIGKRLQSKFTPRLTFKIDNSLDRGD 100
                 778**************999998888..8********************99975578899999************************************ PP

                 XXXXX. CS
        RBFA 100 eiekll 105
                 ++ +l+
  CCG92340.1 101 RVLRLI 106
                 *98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 797.18
//
Query:       CCG92341.1  [L=695]
Description: Translation initiation factor IF-2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-35  122.3   4.9    1.2e-34  119.5   1.2    3.0  3  GTP_EFTU      Elongation factor Tu GTP binding domain
    4.4e-34  116.8   2.4    4.4e-34  116.8   2.4    2.2  2  IF-2          Translation-initiation factor 2
    1.4e-11   44.5   1.9    2.1e-11   43.9   0.2    2.2  2  MMR_HSR1      50S ribosome-binding GTPase
    5.8e-07   29.2   0.0    1.8e-06   27.7   0.0    1.8  1  IF2_N         Translation initiation factor IF-2, N-terminal 
    2.8e-06   27.1   0.4    1.4e-05   24.9   0.1    2.3  2  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
    6.4e-06   25.7   3.6    6.7e-05   22.4   0.1    3.1  2  SRPRB         Signal recognition particle receptor beta subun
    4.6e-05   23.1   0.1    0.00012   21.8   0.0    1.7  2  Ras           Ras family
      7e-05   22.8   0.3       0.12   12.3   0.0    2.8  2  RsgA_GTPase   RsgA GTPase
    9.6e-05   22.0   0.2    0.00025   20.6   0.2    1.8  1  FeoB_N        Ferrous iron transport protein B
    0.00013   21.5   0.0    0.00028   20.4   0.0    1.5  1  Arf           ADP-ribosylation factor family
    0.00014   22.1   1.6       0.72   10.3   0.0    3.3  3  GTP_EFTU_D2   Elongation factor Tu domain 2
     0.0011   19.1   0.0     0.0024   18.1   0.0    1.6  1  Roc           Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.051   12.7   0.1       0.11   11.5   0.1    1.5  1  HypD          Hydrogenase formation hypA family
      0.065   13.3   0.5       0.24   11.4   0.0    2.2  2  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
       0.12   12.4   2.0        3.3    7.7   0.0    3.3  3  Dynamin_N     Dynamin family
       0.14   11.9   0.1        1.4    8.7   0.0    2.5  2  ATP_bind_1    Conserved hypothetical ATP binding protein
       0.19   12.2   5.8        1.8    9.0   0.0    3.2  3  AAA_23        AAA domain
       0.36   10.7   4.2       0.21   11.5   1.0    2.0  2  PapD_N        Pili and flagellar-assembly chaperone, PapD N-t


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   1.2   1.2e-37   1.2e-34       6     190 ..     200     356 ..     196     359 .. 0.90
   2 ?   -2.5   0.1       3.2   3.2e+03      37      75 ..     457     499 ..     447     506 .. 0.67
   3 ?   -3.2   0.0       5.1   5.1e+03     105     141 ..     530     566 ..     527     606 .. 0.67

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 1.2e-37
                 EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETT CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdav 104
                 ++++ghvDhGKt+L+d++ +++                   ++ ++ giT ++ a ++   ++ + i++iDtPGH+ F+    rg++++D++vlvv+a+
  CCG92341.1 200 VTFMGHVDHGKTSLLDAIRQTK------------------VAAGEAGGITQHIGAYTVV--KDGRSITFIDTPGHEAFTAMRARGASITDIVVLVVAAD 278
                 789***************9332..................3345688************..************************************** PP

                 TBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 105 eGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealve 190
                 +Gv+pqt e +++a++ +vpiiv+iNK+D ++a+  ++++++++        l   ++ g  ++ ++ +Sa+k+ g+++ll+++  
  CCG92341.1 279 DGVMPQTLEAINHARNAKVPIIVAINKIDLPGANPLRVKSQLQEIG------LVPEEYGG--DTIFCEVSAIKKIGIDNLLDMILL 356
                 *******************************************544......55555565..589******************975 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.2
                 HHH.HSTHCHSHHHHHHTSCSSCEEEEEE...TTCSSEEEEEE CS
    GTP_EFTU  37 aee.ervlDtlkeErergiTiksaaisle...ketkkylinli 75 
                 +e  ++ +  lk++re  +T k++  +++   +e++k+++n++
  CCG92341.1 457 KEIvQERIEALKKDREASLTPKVTLENIFqaiEEGQKKTLNIV 499
                 2222556888888888888888887777755557777777765 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.1
                 TBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHH CS
    GTP_EFTU 105 eGvepqteevlrlalkegvpiivfiNKmDrlkaelke 141
                 +Gv + +e  + la++ g  +i f +K D + a l +
  CCG92341.1 530 SGVGSISESDILLAKAAGGLVIGFNTKTDSAAAALAK 566
                 5666677777777777777788888888887554443 PP

>> IF-2  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       9.6   9.5e+03      19      54 ..     363     402 ..     361     403 .. 0.63
   2 !  116.8   2.4   4.4e-37   4.4e-34       1     105 []     481     586 ..     481     586 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 9.6
                 EEESSHHHHHH..HHHHHHCTT...SSTEEEECEEEESSB CS
        IF-2  19 ikaDvqGsleA..lkeaLekles..eevkvkvihsgvGai 54 
                 +ka+ +G + A  +++ +ek +     v ++  h +vG+i
  CCG92341.1 363 LKANYEGNAKArvIESQIEKGRGptATVIIQSGHLKVGDI 402
                 6777777766544777777765455566666667777766 PP

  == domain 2  score: 116.8 bits;  conditional E-value: 4.4e-37
                 CCCHHHCCCSCS.SCCEEEEEESSHHHHHHHHHHHHCTT.SSTEEEECEEEESSB-HHHHHHHHHSTEEEEEESSSCTHHHHHCCCCCTSEEEEESSHH CS
        IF-2   1 leelfeeikeeg.kelnviikaDvqGsleAlkeaLekleseevkvkvihsgvGaitesDvelasasnaiiigFnvkvskkakklaekegvkirlynvIY 98 
                 le++f++i+e + k+ln+++kaDvqGsleAl   L+k++s++v +++ihsgvG+i+esD+ la+a+ +++igFn+k++++a++la++egv+i+l +vIY
  CCG92341.1 481 LENIFQAIEEGQkKTLNIVLKADVQGSLEALIGQLKKISSQKVDLDIIHSGVGSISESDILLAKAAGGLVIGFNTKTDSAAAALAKREGVQIKLFSVIY 579
                 58999***98779*************************88*********************************************************** PP

                 HHHHHHH CS
        IF-2  99 kliddvk 105
                 +l+d+vk
  CCG92341.1 580 ELVDQVK 586
                 *****97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.2   2.1e-14   2.1e-11       2     114 .]     200     305 ..     199     305 .. 0.85
   2 ?   -2.0   0.0       3.6   3.6e+03      25      55 ..     472     506 ..     460     588 .. 0.66

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 2.1e-14
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeeleel 100
                 v ++G+   GK++L+ a+ ++k+ +++  g T++i  ++v ++g++i+++DtpG  e         +a  a + +d+++lvv a  +++ p+  e  + 
  CCG92341.1 200 VTFMGHVDHGKTSLLDAIRQTKVAAGEAGGITQHIGAYTVVKDGRSITFIDTPG-HE----AFTAMRARGASI-TDIVVLVVAAD-DGVMPQTLEAINH 291
                 789********************************999999899**********.44....334444444433.59999999877.7799998888888 PP

                 HHHTTSEEEEEEES CS
    MMR_HSR1 101 leeakkplilvlnk 114
                  ++ak p+i+++nk
  CCG92341.1 292 ARNAKVPIIVAINK 305
                 889*********98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.6
                 EESSSTTSSSSEEEEEEEETT.EE...EEEEECGG CS
    MMR_HSR1  25 ivsdkpgtTrdinegrvklkg.ke...ielvDtpG 55 
                 ++s +p +T++ ++  +++++ k    +  +D+ G
  CCG92341.1 472 EASLTPKVTLENIFQAIEEGQkKTlniVLKADVQG 506
                 55666777777777766633212222223345555 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.8e-09   1.8e-06       4      52 ..     112     158 ..     110     159 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.8e-09
       IF2_N   4 irVyeLAkeLgvkskevikkLfkelGievkshsssLDeetaeliaeefg 52 
                 ++V+eLA  +g+k+ ++i++L++ + i  +s+++ LDe +++ +++ +g
  CCG92341.1 112 VSVKELAALIGIKPFQLIHHLME-MNIF-ASMTQLLDEGVIQGVCQRLG 158
                 89*******************77.****.***********999999877 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.5   4.5e+03      93     110 ..     157     174 ..     141     177 .. 0.84
   2 !   24.9   0.1   1.4e-08   1.4e-05       4     141 ..     200     354 ..     198     356 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.5
   PduV-EutP  93 iGiitkidlaedeeniea 110
                 +Gii ++d+ e +++++a
  CCG92341.1 157 LGIIIQTDKKERHAQVHA 174
                 79******9999999876 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 1.4e-08
   PduV-EutP   4 illiGkvgsGKttLtqalkgeelkYkk....tqaiefsd........eviDtPGeylenrklysalivtsaeadvialvqdate...eesvfppgfasv 87 
                 + ++G+v+ GKt+L  a+++ ++        tq i  ++        ++iDtPG     + +    +  +  +d+++lv++a++   ++++ + + a+ 
  CCG92341.1 200 VTFMGHVDHGKTSLLDAIRQTKVAAGEaggiTQHIGAYTvvkdgrsiTFIDTPGH----EAFTAMRARGASITDIVVLVVAADDgvmPQTLEAINHARN 294
                 679*****************88876533334888876652222222246999994....3343333445556789999988876222455556678888 PP

   PduV-EutP  88 fnkeviGiitkidlaedeenieaveelLksaGa.......ekif.evsavekegieellkyl 141
                  + ++i  i kidl+   +n   v+++L++ G        ++if evsa++k+gi++ll+++
  CCG92341.1 295 AKVPIIVAINKIDLP--GANPLRVKSQLQEIGLvpeeyggDTIFcEVSAIKKIGIDNLLDMI 354
                 899***********9..44445556666655432222222899857************9876 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   6.7e-08   6.7e-05       3     137 ..     197     320 ..     195     330 .. 0.69
   2 ?    1.7   0.8      0.15   1.5e+02     123     155 ..     446     478 ..     444     506 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6.7e-08
                 --EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHH CS
       SRPRB   3 kpavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAElly 100
                 +p v ++G  d GKTsl+  + + +v    +    +++ + +  ++g ++t+iD PGhe +           +s+  +v +v  ++d+  + ++ E   
  CCG92341.1 197 APVVTFMGHVDHGKTSLLDAIRQTKVAAGEAGGiTQHIGAYTVVKDGRSITFIDTPGHEAFTAMRARG----ASITDIVVLV-VAADDGVMPQTLE--- 287
                 67899*****************9999988887645555444458999************997654444....4455554444.2333333444433... PP

                 HHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHH CS
       SRPRB 101 eilliteklkdavdiliACnKqelflakspklikdaL 137
                     i+  ++ +v+i++A nK +l  a  p  +k +L
  CCG92341.1 288 ---AINHARNAKVPIIVAINKIDLPGAN-PLRVKSQL 320
                 ...3455567788888888888887775.45566666 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.15
                 TSTT---HHHHHHHHHHHHHHHHHCHHHHHH-- CS
       SRPRB 123 elflakspklikdaLEkElnkiierrskalkel 155
                 el++ k +k++k+ + + ++ + + r+++l+  
  CCG92341.1 446 ELVVEKDEKKVKEIVQERIEALKKDREASLTPK 478
                 78899999******************9999765 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       7.6   7.6e+03     103     125 ..      43      65 ..      25      75 .. 0.66
   2 !   21.8   0.0   1.2e-07   0.00012       4     159 ..     202     357 ..     199     360 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7.6
                 TTSEEEEEEETTTGGGG-SS-HH CS
         Ras 103 envpivLvGnKvDleekravste 125
                 e+ p ++v++ vD ee+++ +++
  CCG92341.1  43 EKKPKAVVATTVDAEERKEKTKK 65 
                 45567777777777775544433 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 1.2e-07
                 EEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST CS
         Ras   4 lvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvae 102
                 ++G    GKtsll    + k        i       ++  dg++  ++  DT G e f+++r    + ++ ++lv + ++      + + +e i++  +
  CCG92341.1 202 FMGHVDHGKTSLLDAIRQTKVAAGEAGGITQHIGAYTVVKDGRS--ITFIDTPGHEAFTAMRARGASITDIVVLVVAADDGV----MPQTLEAINHARN 294
                 6889999*****99999999998888888545555555555555..5679****************9999999997777653....5688999999999 PP

                 TTSEEEEEEETTTGGGG-SS-HHHHHHHH....HHHT..SEEEEEBTTTTCTHHHHHHHHHHH CS
         Ras 103 envpivLvGnKvDleekravsteegeela....kelg..lkfletSAktnenveeafeellre 159
                  +vpi++  nK+Dl   + ++ ++  +      +e+g  + f+e+SA ++ +++++++++l +
  CCG92341.1 295 AKVPIIVAINKIDLPGANPLRVKSQLQEIglvpEEYGgdTIFCEVSAIKKIGIDNLLDMILLQ 357
                 99*************9777765544332224447777789***************99988755 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0026       2.6      96     162 ..     194     255 ..     162     260 .. 0.66
   2 !   12.3   0.0   0.00012      0.12      12      80 ..     263     335 ..     254     361 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0026
                  HCTTSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-SSS CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPGfr 162
                  +l+  +++++G+   GK++L++a+++++ ++ ++   +++ G  T  +       ++ + iDtPG +
   CCG92341.1 194 KLRAPVVTFMGHVDHGKTSLLDAIRQTKVAAGEAGGITQHIGAYTVVK-----DGRSITFIDTPGHE 255
                  6788899*****************998443322222222333333222.....22244566777755 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00012
                  TEES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH.....HHHHHHHHHHHTTSEEE CS
  RsgA_GTPase  12 kvaNvdqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeee.....eleelkeelealgyevl 80 
                  + a ++ ++++v ++++ + +++l+ ++ +a ++++++++++nKiDl   +      +l+e+    e++g +++
   CCG92341.1 263 RGASITDIVVLVVAADDGVMPQTLE-AINHARNAKVPIIVAINKIDLPGANPlrvksQLQEIGLVPEEYGGDTI 335
                  4455555555554554999999998.789******************988874444444444444455555554 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.2   2.6e-07   0.00025       3     126 ..     200     317 ..     198     354 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.6e-07
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnlernLyLtlql 101
                 v+++G  + Gkt+l++a+ ++k   g   G+t      ++  +g++++++D PG  +++a+       +d++      v+v  +d   + ++L  +   
  CCG92341.1 200 VTFMGHVDHGKTSLLDAIRQTKVAAGEAGGITQHIGAYTVVKDGRSITFIDTPGHEAFTAMRARGASITDIV------VLVVAADDGVMPQTLEAINHA 292
                 67899*****************************9999999899**********999888765554444443......34555677789999******* PP

                 HHTTSSEEEEEETHHHHHHTTEEE- CS
      FeoB_N 102 lelgvpvvlalnmideaekkgieid 126
                  + +vp+++a+n+id   ++ +++ 
  CCG92341.1 293 RNAKVPIIVAINKIDLPGANPLRVK 317
                 **************98766666554 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.8e-07   0.00028      19     171 ..     202     354 ..     192     358 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.8e-07
                 EEESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCT CS
         Arf  19 llGLDnaGKtTilkklkleelvt...tvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelk 114
                 ++G    GKt +l  +++ +++       T++    ++   + ++t+ D  G+e    +  +  + td v+ vv +     + +    L+a +++ +++
  CCG92341.1 202 FMGHVDHGKTSLLDAIRQTKVAAgeaGGITQHIGAYTVVKDGRSITFIDTPGHEAFTAMRARGASITDIVVLVVAAD-DGVMPQ---TLEA-INHARNA 295
                 6677778*********9999988443456999999*********************999999999999888888655.555554...4554.68999** PP

                 TSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS...SSSSEEEEEEBTTTTBTHHHHHHHH CS
         Arf 115 evallvlaNKqDlpealseeelrellgleelk...gkrkleiqkcsavkgeglkeglewl 171
                 +v+++v  NK+Dlp+a     ++++l+   l       +    ++sa+k+ g+++ l+ +
  CCG92341.1 296 KVPIIVAINKIDLPGANP-LRVKSQLQEIGLVpeeYGGDTIFCEVSAIKKIGIDNLLDMI 354
                 **************9954.55666666555553333334556678888888888888765 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00072      0.72       1      21 [.     385     405 ..     385     435 .. 0.84
   2 ?   -2.8   0.1       8.8   8.8e+03      16      42 ..     444     471 ..     443     500 .. 0.66
   3 !    9.5   0.0    0.0013       1.3       3      59 ..     618     672 ..     617     678 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00072
                  EEEEEEEEEESEEETTEEEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevri 21 
                  G +a++++ sG lk+Gd v  
   CCG92341.1 385 GPTATVIIQSGHLKVGDIVLC 405
                  6689*************9986 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 8.8
                  TEEEEEECTCTTSEE...EEEEEEEEEEET CS
  GTP_EFTU_D2  16 Gdevrilgndtskke...ivtrissletfh 42 
                  G+e+++   +++kk     ++ri +l + +
   CCG92341.1 444 GEELVV--EKDEKKVkeiVQERIEALKKDR 471
                  777777..4443443446666666665554 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0013
                  EEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEE CS
  GTP_EFTU_D2   3 valgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGviva 59 
                  va++ v sG + +G   r+l+ ++   +   ++i sl +f+ ++ e++ g  +G+ ++
   CCG92341.1 618 VAGCMVQSGRIIRGGLARVLRgKQPIYD---GEILSLKRFQDEVSEVRMGFECGIRLG 672
                  899****************887776666...***********************9887 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.4e-06    0.0024       2     120 .]     200     308 ..     199     308 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.4e-06
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWlk 100
                 v ++G    GKtsll+ + + k+   e   i   +   +v  +k      + +  ++ + Dt G+e f +++    +  ++++lv+ + ++  + + l+
  CCG92341.1 200 VTFMGHVDHGKTSLLDAIRQTKVAAGEAGGITQHIGAYTV--VK------DGR--SITFIDTPGHEAFTAMRARGASITDIVVLVVAA-DDGVMPQTLE 287
                 56889999***************99987766666655554..22......234..46789************9999999999998865.4445567788 PP

                 HHHHHCS.SS-EEEEEE-TTT CS
         Roc 101 elkkvag.kspvilvgnkiDl 120
                  +++ ++ k p+i+ +nkiDl
  CCG92341.1 288 AINHARNaKVPIIVAINKIDL 308
                 8876655267999999***95 PP

>> HypD  Hydrogenase formation hypA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00011      0.11      91     198 ..     512     618 ..     478     632 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
                 T--HHHHHHTT-EEEE-SSHHHHHHHHHH-TTSEEEEEEEE-HHHHHHHHHHHHHHHHHT-SSEEEEEEEE.-HHHHHHHHHHTT.---SEEEEEHHHH CS
        HypD  91 kksLleakaegadvrivyspldalkiakenpdkevvflavGFEttapatalalleakkeglknfsvlsshk.lvppalealleseelkidgfiapghvs 188
                  ++L+++ ++  d+ i++s + +++ ++    k    l +GF+t + + a+al++ +  ++k fsv+   + +v++a++ lle e    +++++ + v 
  CCG92341.1 512 IGQLKKISSQKVDLDIIHSGVGSISESDILLAKAAGGLVIGFNTKTDSAAAALAKREGVQIKLFSVIYELVdQVKEAMSGLLEPEL--RESIVGTAIVK 608
                 57899999999999999999999999999999999999***************************987754389999999998653..36777778888 PP

                 HHHTTHHHHH CS
        HypD 189 tviGlkayee 198
                  v  l++y+ 
  CCG92341.1 609 KVFELSKYKV 618
                 8887777765 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00024      0.24      46     100 ..     286     354 ..     269     360 .. 0.68
   2 ?   -1.9   0.1       3.3   3.3e+03      17      51 ..     453     490 ..     448     520 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
  MMR_HSR1_Xtn  46 idviegnr.vYipclyvlNKiDl..isleeldelare.............pnsvv..iSaekelnldeLkeki 100
                    ++i++ r   +p ++++NKiDl  +  + l+  ++                  +  +Sa k++++d+L+++i
    CCG92341.1 286 LEAINHARnAKVPIIVAINKIDLpgA--NPLRVKSQLqeiglvpeeyggdTI--FceVSAIKKIGIDNLLDMI 354
                   5566554426699**********652..444333322234666666775333..345**************98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.3
  MMR_HSR1_Xtn  17 eetvkkilkey...kihnaevliredvtvDdlidvieg 51 
                   e++vk+i++e         e  +  +vt++++ ++ie+
    CCG92341.1 453 EKKVKEIVQERieaLKKDREASLTPKVTLENIFQAIEE 490
                   56666666552110112334445556666666666655 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3       1.2   1.2e+03      35      88 ..      20      72 ..      13     122 .. 0.57
   2 ?    7.7   0.0    0.0034       3.3       1      34 [.     200     233 ..     200     245 .. 0.86
   3 ?    2.0   0.0       0.2     2e+02     101     140 ..     244     279 ..     232     307 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.2
                -EEEEECCT---CCS...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS--S CS
   Dynamin_N 35 plelqlgeeeeaseravkeelkekekkledfsevreeieketekiagankgisk 88
                p+ l+l++ ++++ ++++ +l  kekk + + + +   e+++ek +++ k++s+
  CCG92341.1 20 PNRLSLDKPKKST-KEADFSLTAKEKKPKAVVATTVDAEERKEKTKKEDKKDSS 72
                5555555544422.2333333333333333333333333333333333333333 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0034
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrr 34 
                 ++++G++ +GK+S+l+a+ + ++   +++ +T+ 
  CCG92341.1 200 VTFMGHVDHGKTSLLDAIRQTKVAAGEAGGITQH 233
                 6789****************99998888888865 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.2
                 -SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS CS
   Dynamin_N 101 kgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanh 140
                   +t++D+PG         ++  + +   di+++v++a+ 
  CCG92341.1 244 RSITFIDTPGHEAFT----AMRARGASITDIVVLVVAADD 279
                 679*******87633....333445555556666665555 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0014       1.4      92     169 ..     245     309 ..     203     354 .. 0.83
   2 ?   -0.2   0.1      0.72   7.1e+02     179     238 ..     459     518 ..     438     521 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0014
  ATP_bind_1  92 dyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDll 169
                 +   +DtPG   +  +++ +a i+        +v v+ +D  ++ ++ + i++         ++++P +v++nk+Dl 
  CCG92341.1 245 SITFIDTPGHEAFTAMRARGASIT------DIVVLVVAADDGVMPQTLEAINH-------ARNAKVPIIVAINKIDLP 309
                 56789****999999999999443......35667777777777776666666.......889*************94 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.72
  ATP_bind_1 179 ffedvealslllekee..ekykklaeaiaelleefalvlrflplssekeesiedllslidea 238
                  ++  e++++l+++ e    +k   e+i +++ee +  +  ++l+++ + s+e+l+ +++++
  CCG92341.1 459 IVQ--ERIEALKKDREasLTPKVTLENIFQAIEEGQKKTLNIVLKADVQGSLEALIGQLKKI 518
                 333..33333333333545566777999******9999999999999999999999998876 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   1.6       1.1   1.1e+03      75     109 ..      35      71 ..       3     109 .. 0.45
   2 ?    9.0   0.0    0.0018       1.8      14      40 ..     192     218 ..     188     233 .. 0.91
   3 ?    3.0   0.2      0.13   1.3e+02      69     132 ..     454     519 ..     410     537 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.1
      AAA_23  75 veltfenkdgry....trsiererelskkkgkttkkakl 109
                 ++++++ k ++      +++  + e++k+k+k+ +k++ 
  CCG92341.1  35 ADFSLTAKEKKPkavvATTV--DAEERKEKTKKEDKKDS 71 
                 33333332222234332222..33333333322222222 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0018
      AAA_23  14 eidFskgltlItGpNGaGKTTildAik 40 
                 +i +  +++ + G+   GKT++ldAi+
  CCG92341.1 192 NIKLRAPVVTFMGHVDHGKTSLLDAIR 218
                 58899999******************8 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.13
      AAA_23  69 gkvkayveltfenkdgry..trsiererelskkkgkttkkaklelleideleqfisellgskkiil 132
                 +kvk++v+ ++e  ++++    + + + e++ +  ++ +k++l+++ +++ +  ++ l+g+ k+i+
  CCG92341.1 454 KKVKEIVQERIEALKKDReaSLTPKVTLENIFQAIEEGQKKTLNIVLKADVQGSLEALIGQLKKIS 519
                 333333222222222222233333334444444444445555555555555555555555444444 PP

>> PapD_N  Pili and flagellar-assembly chaperone, PapD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.0   0.00022      0.21      13      72 ..      30      92 ..      20     106 .. 0.70
   2 ?   -1.0   0.1       1.6   1.6e+03      31      76 ..     459     501 ..     447     512 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00022
                TTSSEEEEEEEE-SS.S-EEEEEEEEC.TTSS.STCCSSCS.SEEEESSEEEE-TTEEEEEEE CS
      PapD_N 13 adekeasvtvkNtgk.epylvqswvdd.gdee.aedekakaspfvvtPPlfrlepgeeqvlRi 72
                +++kea ++++ ++k  +++v ++vd+ +++e +++e++k s + ++PPl + + ++  vl  
  CCG92341.1 30 KSTKEADFSLTAKEKkPKAVVATTVDAeERKEkTKKEDKKDSSLSILPPLEKENNKAIPVLEA 92
                5789999****99994556778888886334425555667778******98877666655554 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
                 EEEEEEECTTSSSTCCSSCS.SEEEESSEEE.E-TTEEEEEEEEE.S CS
      PapD_N  31 lvqswvddgdeeaedekakaspfvvtPPlfr.lepgeeqvlRivtag 76 
                 +vq ++++ +   +d++a+ +p v +  +f+ +e g++++l iv+ +
  CCG92341.1 459 IVQERIEALK---KDREASLTPKVTLENIFQaIEEGQKKTLNIVL-K 501
                 5566666622...33344444545555554337777777777765.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       989  (0.055162); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 4592.12
//
Query:       CCG92342.1  [L=418]
Description: Transcription elongation factor [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-34  116.8   4.2    7.1e-34  116.8   4.2    2.8  2  NusA_N         NusA N-terminal domain
    1.1e-26   92.7   1.7    4.2e-24   84.4   0.1    2.9  2  KH_5           NusA-like KH domain
      1e-05   25.2   5.0      2e-05   24.3   0.1    3.5  3  KH_2           KH domain
    0.00039   20.7   7.6    0.00054   20.3   0.2    3.5  3  S1             S1 RNA binding domain
     0.0049   17.4   0.3      0.039   14.5   0.0    2.6  3  HHH_5          Helix-hairpin-helix domain
     0.0092   15.9   0.0      0.024   14.6   0.0    1.7  1  MRP-S35        Mitochondrial ribosomal protein MRP-S35
  ------ inclusion threshold ------
      0.014   15.3   2.5      0.083   12.8   0.1    3.2  4  KH_4           KH domain
      0.053   13.6   0.2       0.61   10.2   0.2    2.6  3  Frataxin_Cyay  Frataxin-like domain


Domain annotation for each model (and alignments):
>> NusA_N  NusA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   4.2   3.2e-37   7.1e-34       1     121 []       4     124 ..       4     124 .. 0.97
   2 ?    1.5   2.2      0.16   3.6e+02      26      58 ..     285     320 ..     276     384 .. 0.57

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 3.2e-37
                 .CHCCCCCCCCCS---HHHHHHHHHHHHHHHHHCCT-SSS-EEEEE-TTT--EEEEEEEEEESS-S-TTTEEEHHHHHCCSTT--TTBEEEEE----SS CS
      NusA_N   1 EllealeelakekgiskevviealeeaLakaykknygedenveveidretgeikvyskktVveevedpekeIsleeakkidpkikvGdtveeevtpkdf 99 
                 E l ++e ++kekgi+++v iea+++aL++a+kk +g   + +vei ++tg i+v +k++Vve+v+++ ++Is++ ak+idp++k+Gd +e+evtpkdf
  CCG92342.1   4 EVLAIMEYMEKEKGINRQVFIEAMQSALLAAAKKSIGPARDLRVEIHPKTGRINVRAKLEVVEKVQNSHDQISIKRAKEIDPNVKLGDLIEVEVTPKDF 102
                 56789999****************************98899********************************************************** PP

                 CCHCHHHHHHHHHHHHHHHCCH CS
      NusA_N 100 griaaqtakqvivqkireaere 121
                 griaaq +kq+i q ++ +er+
  CCG92342.1 103 GRIAAQVFKQTINQALKGIERK 124
                 ******************9996 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.16
                 HHHHHHHHCCT-..SS.S-EEEEE-TTT--EEEEEE CS
      NusA_N  26 eaLakaykknyg..ed.enveveidretgeikvysk 58 
                 eaL+ a  k+++  ++ + v+v++d+e+  i + +k
  CCG92342.1 285 EALKPAKVKKVEvdQEhHRVKVTVDEENYSIALGRK 320
                 555555556555433325599999999988876555 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   0.1   1.9e-27   4.2e-24       1      69 []     229     297 ..     229     297 .. 0.98
   2 !    6.7   0.1    0.0035       7.8       3      57 ..     302     351 ..     300     357 .. 0.80

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 1.9e-27
        KH_5   1 aGertkvaVkshnpnvdpvGaivgkkGsrikavsseLkgekidvvewseDlaefianalsPaevlsVki 69 
                 +G rtk+aV  +np++dpvG++vg +G+r+k++++eL+ ekid+ +ws++++e+  +al+Pa+v++V++
  CCG92342.1 229 PGFRTKIAVWTNNPKIDPVGSCVGVRGARVKNIVRELHSEKIDLFKWSPNVEELTIEALKPAKVKKVEV 297
                 699****************************************************************86 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0035
        KH_5   3 ertkvaVkshnpnvdpvGaivgkkGsrikavsseLkgekidvvewseD.laefian 57 
                 +r+kv V ++n        ++g+kG++i  + s++ g  idvv++ +  + +f ++
  CCG92342.1 302 HRVKVTVDEEN-----YSIALGRKGKNIW-LASKIVGWDIDVVKEPSEaVDNFTQK 351
                 699********.....999*********7.667777*******9865525566555 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.4     3e+03      64      75 ..      58      70 ..      37      81 .. 0.71
   2 ?    1.0   0.2      0.17   3.8e+02      37      55 ..     248     266 ..     208     274 .. 0.71
   3 !   24.3   0.1   8.8e-09     2e-05      10      61 ..     287     338 ..     279     363 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.4
                TCEEEEEE.EETT CS
        KH_2 64 kkVklniv.kVkk 75
                 ++kl++v kV++
  CCG92342.1 58 VRAKLEVVeKVQN 70
                3455666666654 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.17
                 HHHHTGGGHHHHHHHHHHH CS
        KH_2  37 givIGkgGsnikkigkelr 55 
                 g  +G +G+++k+i  el 
  CCG92342.1 248 GSCVGVRGARVKNIVRELH 266
                 3478999999999988875 PP

  == domain 3  score: 24.3 bits;  conditional E-value: 8.8e-09
                 TECETEEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHH CS
        KH_2  10 ikkagvskveIertanrviiviresqpgivIGkgGsnikkigkelrkdiekl 61 
                 +k a v+kve++++++rv++++ e++  i++G++G+ni    k ++ di+++
  CCG92342.1 287 LKPAKVKKVEVDQEHHRVKVTVDEENYSIALGRKGKNIWLASKIVGWDIDVV 338
                 46788*********************************98888888877766 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3      0.35   7.9e+02      36      61 ..      74      98 ..      58     105 .. 0.84
   2 !   20.3   0.2   2.4e-07   0.00054       1      66 [.     131     188 ..     131     197 .. 0.93
   3 ?    2.1   0.1      0.11   2.6e+02      43      64 ..     291     312 ..     263     319 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.35
                GSSSSCEESCHHHCEETTEEEEEEEE CS
          S1 36 elsrdarvedpdevlkvGdevkvkvl 61
                ++s + r +++d  +k Gd ++v+v+
  CCG92342.1 74 QISIK-RAKEIDPNVKLGDLIEVEVT 98
                67777.88888999999999999997 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 2.4e-07
                 HSTTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETT CS
          S1   1 kpekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkd 66 
                 k++++++v+G++ ++++  ++++lg   eg  pa+e         p+e++ vG+++k++vl v+++
  CCG92342.1 131 KDRINNIVSGTIRRIERSDVIIDLG-RYEGVMPAKERV-------PTEEYVVGERIKAYVLSVEDT 188
                 57899********************.********9844.......9*****************986 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.11
                 ESCHHHCEETTEEEEEEEEEEE CS
          S1  43 vedpdevlkvGdevkvkvlkvd 64 
                 + ++ ev +++ +vkv v++ +
  CCG92342.1 291 KVKKVEVDQEHHRVKVTVDEEN 312
                 5677789999999999999876 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.1   1.4e+04       6      16 ..     117     127 ..     116     129 .. 0.77
   2 ?   -1.3   0.0       1.6   3.6e+03      26      46 ..     212     234 ..     201     236 .. 0.66
   3 !   14.5   0.0   1.8e-05     0.039      11      55 ..     366     411 ..     357     412 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.1
                 TSTT--HHHHH CS
       HHH_5   6 svsGiGpktAl 16 
                  ++Gi +k++l
  CCG92342.1 117 ALKGIERKMVL 127
                 57899999876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
                 HHHHHHS..-HHHHHTSTTS-HH CS
       HHH_5  26 vedlaaa..dveeLakipGiGkk 46 
                 v ++a++  +v+++a+ pG+  k
  CCG92342.1 212 VSEVADKivEVKAIAREPGFRTK 234
                 56677764467888888887655 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 1.8e-05
                 -HHHHHHHHTTT--SHHHHHHS-HHHHHT.STTS-HHHHHHHHHHH CS
       HHH_5  11 GpktAlallsaGiesvedlaaadveeLak.ipGiGkktAeriilel 55 
                   ++A  +++aG+  +e++a+ ++e+L + +p + + +  r+++++
  CCG92342.1 366 DQSVAEQIVRAGFINPEAVAESEEEDLMSaLPELDPQLIHRLKEAA 411
                 567899***************9998877769***********9987 PP

>> MRP-S35  Mitochondrial ribosomal protein MRP-S35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.1e-05     0.024       4      75 ..     115     186 ..     112     190 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
     MRP-S35   4 eksfasllrnsklvqlGdaegklvvGkifhiveddlyidfGlkfhcvckrpavngekyqrGarvrlrlkdle 75 
                 ++++  + r+ +l ++ d  +++v+G i +i   d+ id+G    ++  +  v +e+y+ G r++  ++ +e
  CCG92342.1 115 NQALKGIERKMVLSEFKDRINNIVSGTIRRIERSDVIIDLGRYEGVMPAKERVPTEEYVVGERIKAYVLSVE 186
                 5677778899999999999999*******************8877788899999**********98887666 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.7   3.7e+03      16      37 ..      60      81 ..      52      84 .. 0.76
   2 ?    0.5   0.1      0.26   5.8e+02      28      43 ..      90     105 ..      63     106 .. 0.74
   3 ?   12.8   0.1   3.7e-05     0.083      17      51 ..     294     324 ..     279     325 .. 0.77
   4 ?   -2.9   0.0       2.9   6.6e+03       4      24 ..     345     365 ..     343     384 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.7
        KH_4 16 eevevteeeeeeeveielnveg 37
                +++ev e+ ++++++i ++ ++
  CCG92342.1 60 AKLEVVEKVQNSHDQISIKRAK 81
                5678888888888888887655 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.26
        KH_4  28 eveielnvegedlGrv 43 
                 ++ ie++v ++d Gr+
  CCG92342.1  90 GDLIEVEVTPKDFGRI 105
                 5679999999999997 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 3.7e-05
        KH_4  17 evevteeeeeeeveielnvegedlGrvIGkrGrtl 51 
                 +ve     ++e+++++++v++e+  +  G++G+++
  CCG92342.1 294 KVE----VDQEHHRVKVTVDEENYSIALGRKGKNI 324
                 233....45679*********************97 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 2.9
        KH_4   4 vedilkalvddpeevevteee 24 
                 v ++ ++l +++ee+  t+++
  CCG92342.1 345 VDNFTQKLTKAAEEMASTLSI 365
                 566666666666666555553 PP

>> Frataxin_Cyay  Frataxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.7   1.6e+03       4      27 ..     108     133 ..     105     200 .. 0.74
   2 ?   10.2   0.2   0.00027      0.61      21      71 ..     284     332 ..     277     360 .. 0.81
   3 ?   -1.4   0.0       1.1   2.4e+03       9      28 ..     344     363 ..     336     379 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.7
                    HHHHHHHHHHHHHHHHHH...HHHHH CS
  Frataxin_Cyay   4 eeyhkladelldsleekl..eelaee 27 
                    + +++ ++++l+ +e+k+   e++++
     CCG92342.1 108 QVFKQTINQALKGIERKMvlSEFKDR 133
                    56888888888888877623444443 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00027
                    H.HHHHH--CTS.SEEEETTEEEEEETTS-EEEEEEEGGGTEEEEEES.SE CS
  Frataxin_Cyay  21 leelaeeaeedeldveyssgvLtiefekkgtyvinkqppnkqIWlsspisg 71 
                    +e+l+ ++  ++++v+ ++  +++++ ++++y i    + k IWl+s+i g
     CCG92342.1 284 IEALKPAK-VKKVEVDQEHHRVKVTV-DEENYSIALGRKGKNIWLASKIVG 332
                    45555554.33458888899999999.6699*****************977 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.1
                    HHHHHHHHHHHHH.HHHHH- CS
  Frataxin_Cyay   9 ladelldsleekleelaeea 28 
                    ++d++ ++l+++ ee+a + 
     CCG92342.1 344 AVDNFTQKLTKAAEEMASTL 363
                    55666666666666665553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       974  (0.0543254); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 2853.29
//
Query:       CCG92343.1  [L=280]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-44  151.4   0.0    1.8e-44  150.8   0.0    1.3  1  LpxI_C         LpxI C-terminal domain
    9.6e-37  125.8   0.1    1.5e-36  125.1   0.1    1.3  1  LpxI_N         LpxI N-terminal domain
  ------ inclusion threshold ------
      0.091   13.3   0.0        1.5    9.4   0.0    2.4  2  Biotin_carb_N  Biotin carboxylase, N-terminal domain


Domain annotation for each model (and alignments):
>> LpxI_C  LpxI C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   0.0     3e-48   1.8e-44       2     132 .]     149     277 ..     148     277 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.8 bits;  conditional E-value: 3e-48
      LpxI_C   2 egvltkkkpsaeelediefglevakalgslDiGqtvvvkqkavlAvEaieGTdaairrageliakgkggvlvKvakpsqdlrfDlPaiGlrTvetmaea 100
                 +g +++ + +++ +ed+efg+++ak++++lDiGq+vvvk+++vl+vEa+eGTd+a++r+gel  ++ +++lvKv+kp+qd rfD+P+iG++T+e++++ 
  CCG92343.1 149 SGQFGGPQIKKRYWEDVEFGFRIAKEIARLDIGQSVVVKNGTVLSVEAFEGTDEAMKRGGEL--GRGSAMLVKVSKPNQDFRFDVPVIGIKTIESAQRF 245
                 788999999*****************************************************..899******************************** PP

      LpxI_C 101 glkglaieagktlvldreevialadaaglfvv 132
                 g+ ++++e++ktl+l++e+v++lad+++++++
  CCG92343.1 246 GIGTIVCESAKTLILEKEKVVSLADQTKISLI 277
                 *****************************985 PP

>> LpxI_N  LpxI N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.1   2.6e-40   1.5e-36       1     128 [.      16     144 ..      16     145 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 2.6e-40
      LpxI_N   1 kigliAGsGrlPllvaeaakaagr.evvvvalegeadeelekivdevaevsvgqlgklikaLkregvtevvmaGkvekpklldlrpDlralkllaklkd 98 
                 ++g+iAG+G +Pllva++ak++g  +++ v++  e+d ++e  +++v++++vgql+kli+++k+++v+ ++maG++  ++l++lrpDlra+ llaklk+
  CCG92343.1  16 RLGIIAGRGVYPLLVAKGAKRSGVeKIFSVCFVSETDHQMETLSTAVEWIRVGQLSKLIQFFKKNEVNTAIMAGGIAPSHLFELRPDLRAILLLAKLKE 114
                 69*********************659************************************************************************* PP

      LpxI_N  99 rgddalLravveelekeGikvlgateilpe 128
                 r+ +++++a+++elek+G+ +l+at++l++
  CCG92343.1 115 RNAHTIFGAIAQELEKNGVILLSATTFLED 144
                 ***************************997 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00026       1.5       6      70 ..      19      86 ..      15      95 .. 0.85
   2 ?    0.9   0.0      0.11   6.5e+02      13      47 ..     234     271 ..     232     276 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00026
                   EE---HHHHHHHHHHHHHT...T-EEEEEEEGGGTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHH CS
  Biotin_carb_N  6 lianrGeiAvriiravrel...gietvavyseedanslhvreadeavelgpasasesYlniekivkaa 70
                   +ia rG   + +++ +++    +i +v+ +se+d++++ +++a e +++g+ s+  ++ + +++ +a+
     CCG92343.1 19 IIAGRGVYPLLVAKGAKRSgveKIFSVCFVSETDHQMETLSTAVEWIRVGQLSKLIQFFKKNEVNTAI 86
                   5899999999999999999666677899**********************999888888888776665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
                    HHHHHHHHHHHTT-EEEEEEEGG...GTTSHHHHHSSE CS
  Biotin_carb_N  13 iAvriiravrelgietvavysee...danslhvreade 47 
                    i ++ i++++++gi t++  s++    ++ + v++ad+
     CCG92343.1 234 IGIKTIESAQRFGIGTIVCESAKtliLEKEKVVSLADQ 271
                    77899999999999999998887444455556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1978.32
//
Query:       CCG92344.1  [L=308]
Description: Predicted dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-28   99.9   0.2    2.5e-28   99.3   0.2    1.3  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
    2.7e-07   30.1   0.1    4.6e-07   29.4   0.1    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
    0.00011   22.8   0.1    0.00022   21.8   0.1    1.5  1  CoA_binding      CoA binding domain
     0.0005   20.3   0.1     0.0021   18.2   0.1    2.1  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
     0.0012   17.8   0.0     0.0018   17.2   0.0    1.2  1  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
     0.0014   18.7   0.3     0.0031   17.6   0.1    1.8  2  DapB_N           Dihydrodipicolinate reductase, N-terminus
     0.0043   17.3   0.6       0.02   15.1   0.6    2.0  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0046   17.5   0.2      0.011   16.3   0.2    1.7  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.068   12.7   0.2       0.11   12.0   0.2    1.4  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
        0.1   12.5   0.3       0.19   11.6   0.1    1.6  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.2   1.4e-31   2.5e-28       1     120 []       4     120 ..       4     120 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 1.4e-31
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-S CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPlat 97 
                   ++ ++iG+G ig++h+r + +  ++ + v+ +d+++ +a ++ae+ g +++++leell+  e+dav++atp++th+ +  ++leag+hvl+EKP+++
    CCG92344.1   4 IKLGVIGIGHIGKHHARIYAQM-DGVHYVGCFDIKKDAAGRLAEAIGGKVFESLEELLK--EVDAVSIATPTSTHFTIGSKCLEAGVHVLIEKPITD 97 
                   588*************555555.************************************..************************************ PP

                   SHHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  98 tveeakelvelaekkgklvsvgy 120
                   ++ eak lve+a+k++++++vg+
    CCG92344.1  98 SLLEAKLLVEIAKKNDVILQVGH 120
                   *********************97 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1   2.6e-10   4.6e-07      38     106 ..       5      75 ..       1      85 [. 0.75

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2.6e-10
                   EEEEES-SHHHHHHHHHHHHTT-..EEEEESSSHHHHH.CHHHHTC.EECSHHHHHHH-SEEEE-S--STTTT CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlkafgm..kviaydrskkkee.eeeelgv.elvsleellaesDivslhlpltpetr 106
                   ++G+iG+G+IG++ a++ ++++    v ++d +k++    +e+ g   ++sleell+e D vs+++p +  t+
    CCG92344.1   5 KLGVIGIGHIGKHHARIYAQMDGvhYVGCFDIKKDAAGrLAEAIGGkVFESLEELLKEVDAVSIATPTS--TH 75 
                   79*****************9975444556777766555644444442777****************954..44 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   1.2e-07   0.00022       4      88 ..       4      88 ..       1      91 [. 0.90

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.2e-07
                 EEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEET..TEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-S CS
  CoA_binding  4 tkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevl..glpvyksvdeleektevdvavitvPaesaqeavdelveagik 88
                  k +viG+g+ g+  +   +++ +++ +  f+++ + +g+  +  g +v++s++el ++  vd+  i++P      +  +++eag+ 
   CCG92344.1  4 IKLGVIGIGHIGKHHARIYAQMDGVHYVGCFDIKKDAAGRLAEaiGGKVFESLEELLKE--VDAVSIATPTSTHFTIGSKCLEAGVH 88
                 6889***********************************77766699************..99999999999888888888888886 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.2e-06    0.0021       1      68 [.       5      75 ..       5     124 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.2e-06
                   EEEEE--SHHHHHHHHHH..HHTT-EEEEE-SSHHHHHHHHHT.TEEE-SSHHHHHHHCSEEEE-SSSHHH CS
  NAD_binding_2  1 kigfiGlGvMGsnmalnl..lkagykvavynrtkekveelvae.gakaaesieelvasldvvitmvkagka 68
                   k+g+iG+G +G++ a+    ++  + v +++ +k+++ +l+++ g k++es+eel++++d+v +  + +++
     CCG92344.1  5 KLGVIGIGHIGKHHARIYaqMDGVHYVGCFDIKKDAAGRLAEAiGGKVFESLEELLKEVDAVSIATPTSTH 75
                   68*************9983345668999*************9967**************999887776655 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     1e-06    0.0018     132     244 ..       6     116 ..       2     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1e-06
                      EEEE--SHHHHHHHHHHCCCS--SEEEEE-SSHHHHHHHHHHCCS.CTT-EEECSCHHHHTTSSEEEE----SS.-SB-GGGS-TT-EEE..E- CS
  OCD_Mu_crystall 132 laiiGaGvqaetqlealkavldikevriydrdeeaaekfaenlqefefevsackseeeavegadivvtvTaaka.pilkaewvkpGahin..av 222
                      l++iG G   + ++++  ++ +++ v  +d+++ aa ++ae + +     ++ +s ee  +++d v  +T++     +  + +++G+h++   +
       CCG92344.1   6 LGVIGIGHIGKHHARIYAQMDGVHYVGCFDIKKDAAGRLAEAIGG-----KVFESLEELLKEVDAVSIATPTSThFTIGSKCLEAGVHVLieKP 94 
                      89****************************************998.....8899***********99999887756677889******762257 PP

                      S--STT--SB-HHHHHCCEEEE CS
  OCD_Mu_crystall 223 gadapgkteLdddilkradifv 244
                        d   ++ L  +i k+ d++ 
       CCG92344.1  95 ITDSLLEAKLLVEIAKKNDVIL 116
                      8999999999999999999875 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.8e-06    0.0031       1      96 [.       4      91 ..       4     117 .. 0.86
   2 ?   -2.8   0.0       3.7   6.6e+03      82     112 ..     196     226 ..     177     232 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.8e-06
                EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSSHHHHHHH-SEEEE-S-HHHHHHHHHHHHHTT-EEEE CS
      DapB_N  1 ikvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevlekadvliDFTtpeavlenlklalekgvklVi 96
                ik++v+G+ G +Gk+ ++   + ++++ v+ +d k+       ag+l++   +g +v+++lee+l+++d +   T  +      + +le+gv++ i
  CCG92344.1  4 IKLGVIGI-GHIGKHHARIYAQMDGVHYVGCFDIKK-----DAAGRLAE--AIGGKVFESLEELLKEVDAVSIATPTSTHFTIGSKCLEAGVHVLI 91
                799****9.*************************98.....56666665..59**************99766666555556667888888888766 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.7
                 HHHHHHHHTT-EEEE--SS--HHHHHHHHHH CS
      DapB_N  82 enlklalekgvklViGTTGlseeelaeleel 112
                 +n+++ +++g  + i T  +s+e++ +++ +
  CCG92344.1 196 ANARIKFKNGAIANITTSRISPEKMRKIRIF 226
                 4555666666666677777777777777665 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.6   1.1e-05      0.02       2      97 ..       7      90 ..       6     103 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
                     EEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHH..HHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-E CS
  Sacchrp_dh_NADP  2 liiGaGsvGqavaellarhfdvdaeitvadrskek..lealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCietgvh 95
                      +iG G +G+  a+ +a+ + v     v +++ +k  + +l          a+a+  +  e+ L++llke d+v  ++p   + ++   C+e+gvh
       CCG92344.1  7 GVIGIGHIGKHHARIYAQMDGV---HYVGCFDIKKdaAGRL----------AEAIGGKVFES-LEELLKEVDAVSIATPTSTHFTIGSKCLEAGVH 88
                     59****************9999...4666666666003333..........56777778899.*********987777777*************** PP

                     EE CS
  Sacchrp_dh_NADP 96 yv 97
                     ++
       CCG92344.1 89 VL 90
                     97 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   5.9e-06     0.011       1      77 [.       5      78 ..       5     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.9e-06
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHH CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveev 77
                   k+g+iG G++g+  a+  ++ +   h +    + +++ a  lae++g kv++ + ee+++e d v +a +++ +  +
     CCG92344.1  5 KLGVIGIGHIGKHHARIYAQMD-GVHYVGCF-DIKKDAAGRLAEAIGGKVFE-SLEELLKEVDAVSIATPTSTHFTI 78
                   79**************999998.89999955.99******************.***************999876655 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   6.3e-05      0.11       2      59 ..       5      64 ..       4      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.3e-05
                    EEEEE--STTHHHHHHHHHHCT..SEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHC CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeig..hevigvDideekvdklnsgkipiyepgLeelvkkav 59
                    k+ viG G++G  +a ++a++   h v + Di + +   l +     + + Leel+k++ 
      CCG92344.1  5 KLGVIGIGHIGKHHARIYAQMDgvHYVGCFDIKKDAAGRLAEAIGGKVFESLEELLKEVD 64
                    689*****************977899********99999988877777777888887765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00011      0.19       1      51 [.       5      57 ..       5     114 .. 0.77
   2 ?   -3.2   0.0       3.8   6.8e+03     105     123 ..     203     221 ..     191     230 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
                EEEEE--SCCHHHHHHHHHHT.T.-EEEEE-S-HHHHHHHHHHHHHHHHCCTT CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasa.g.leVvlvdiseealekalekieksleklve 51
                k++viG G +G+  a + a+  g + V  +di+++a+ + +e+i  ++ +  e
  CCG92344.1  5 KLGVIGIGHIGKHHARIYAQMdGvHYVGCFDIKKDAAGRLAEAIGGKVFESLE 57
                579****************997536799*************999885544433 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.8
                 -TTSEEEE--SSS-HHHHC CS
     3HCDH_N 105 kpdailasnTSslsisela 123
                 k+ ai   +TS +s++++ 
  CCG92344.1 203 KNGAIANITTSRISPEKMR 221
                 4556666678888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2403.98
//
Query:       CCG92345.1  [L=394]
Description: Lipid-A-disaccharide synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-92  308.6   0.0      6e-92  308.4   0.0    1.0  1  LpxB      Lipid-A-disaccharide synthetase
  ------ inclusion threshold ------
      0.013   14.6   0.0      0.023   13.8   0.0    1.3  1  DUF354    Protein of unknown function (DUF354)
       0.16   12.6   0.2       0.36   11.5   0.1    1.6  2  SnAC      Snf2-ATP coupling, chromatin remodelling complex


Domain annotation for each model (and alignments):
>> LpxB  Lipid-A-disaccharide synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.4   0.0     1e-95     6e-92       2     361 ..      12     366 ..      11     378 .. 0.90

  Alignments for each domain:
  == domain 1  score: 308.4 bits;  conditional E-value: 1e-95
                 EEEE-SHHHHHHHHHHHHHHHHH-TT-EEEEEE-HHHHHTT-EEEEEGGGH------------HHHHHHHHHHHHHHHHH--SEEEEES-HHHHHHHHH CS
        LpxB   2 flsagevSgdllgaelikelkeeypelefvGvggekmeaeglealaemeeisvvGlievlkkllkllkirkkvvknllkkkadlliliDapdfnlrlak 100
                 +l+age+Sgdl+ga li++l++  pe+ f+Gvgg +m+a+g   l+e ++++vvGl+ev+k+l ++ ki k++++  + +k+d +iliD+p+fnlr a 
  CCG92345.1  12 LLVAGETSGDLYGALLIEALRKSFPEAVFLGVGGSRMAAAGQIQLYELSKLAVVGLVEVIKNLAEIRKIFKELLHCAIVEKPDCVILIDYPGFNLRFAS 110
                 699************************************************************************************************ PP

                 HHHHTT--..EEEES--TTT--SHHHHHHHHHH-SEEEESSHHHHHHHHHTT..--EEE---HHHHHS-SS--.HHHHHHHHT--TTS-EEEEE--SSH CS
        LpxB 101 klrkqgikkkiiyyvsPsvWawkpkrakkiakytdlllaiLPfEkefyqkkg..ldvryvGHplldaikkekk.eakakellgidedervlallpgsRk 196
                 klrk+ +  ki+yy+sP+vWaw  +ra+ + +  dl+++i+PfEk++++k +  l+v++vGHplld++ +++  + +    +        +allpgsR+
  CCG92345.1 111 KLRKELPTTKIVYYISPQVWAWNSQRAARFHQLFDLMVVIFPFEKPWFEKNAptLRVEWVGHPLLDRLLPNPLpNSQFSSNK--------IALLPGSRR 201
                 **************************************************9999**************99987566666666........9******** PP

                 HHHHHHHHHHHHHHHHHHHH-TT-EEEEEESSHHHHHHHHHHHHHH-TT---EEEES-HHHHHHH-SEEEESSTTHHHHHHHTT--EEE-----HHHHH CS
        LpxB 197 seirrllksllkaaqqlkkqlenlkllvplvnkkyeeqileikaeenldvqllllsgealealaaadlaliksGTaaLEaalaktPmvvayrvkpltff 295
                  ei r+l++l + a ++  ++++ ++l    n++  e+ l  + e++l   l +  g  l  +  + la+++sG ++LE+a++++P++v y+ +plt+ 
  CCG92345.1 202 MEIIRHLPILYQVAWKMVMKNQDYEFLWIAPNEELIELGLAHLGEKHLPEWLKIQIGYPLSHVSRCRLAILASGSVSLECAILGVPQIVIYKTNPLTYQ 300
                 ***************************99999998886555555544433333333577889999********************************** PP

                 HHHHHHHHS--SHHHHHHTS-SS----GGG-SHHHHHHHHHHHHTTS...HHHHHHHHHHHHHHHH CS
        LpxB 296 lakrlvkikyvslvNillnreivpeliqeesdaqleaaallllleneekakkekdkekkfeellre 361
                 ++krlvk++++s+vN+l+ ++ivpe++q ++++  +   +l l+e+ee +   k + k+++++l  
  CCG92345.1 301 VGKRLVKVPFLSIVNVLASEQIVPEFVQDNAHPDRIVPIALRLMEDEELRTWMKKRMKEVIDSLGS 366
                 ************************************999999999997766666666665555443 PP

>> DUF354  Protein of unknown function (DUF354)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.9e-06     0.023     248     285 ..     261     298 ..     254     317 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.9e-06
      DUF354 248 lsllkrsdlviGaGGtmnreaallGipvvscypqklls 285
                 ls + r+ l i a G++  e+a+lG+p +  y  ++l+
  CCG92345.1 261 LSHVSRCRLAILASGSVSLECAILGVPQIVIYKTNPLT 298
                 78899****************************99996 PP

>> SnAC  Snf2-ATP coupling, chromatin remodelling complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.8   1.7e+04      27      36 ..     245     254 ..     244     257 .. 0.80
   2 ?   11.5   0.1     6e-05      0.36      15      42 ..     332     359 ..     320     385 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.8
                 ---------- CS
        SnAC  27 eeseLPefye 36 
                  e+ LPe+++
  CCG92345.1 245 GEKHLPEWLK 254
                 58899***97 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6e-05
                 ......----SS----------------- CS
        SnAC  15 gser.kplpsRLleeseLPefyekdgvee 42 
                 +++r  p+  RL+e++eL  +++k  ++e
  CCG92345.1 332 HPDRiVPIALRLMEDEELRTWMKKR-MKE 359
                 4445567889*************95.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 2369.46
//
Query:       CCG92346.1  [L=352]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   13.8   0.0      0.039   13.2   0.0    1.2  1  DUF535    Protein of unknown function (DUF535)
       0.27   11.5   0.9          4    7.8   0.1    2.4  2  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DUF535  Protein of unknown function (DUF535)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.4e-06     0.039      51     125 ..      51     128 ..      38     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.4e-06
      DUF535  51 lrpYlsknlsakqrleaivdhytfleelltae.llqellek...kgltlaelegkeeeeleleLsinagqrkEGelsLe 125
                 lr+Y+++++s k+rl+a ++ +++ + l ++  +l+ +++k   k+ ++++ e+++ee+l++ +   +++++EGelsL 
  CCG92346.1  51 LRHYVFNQVSKKDRLTAANNSFKLPSFLSPKPpALPVIHSKelkKEASFLA-EENKEEKLDAFIKDAERFEREGELSLA 128
                 79********************97666555441444444445544677774.7888899******************96 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.03   2.7e+02      12      33 ..     120     141 ..     116     142 .. 0.87
   2 ?    7.8   0.1   0.00045         4       2      33 ..     144     175 ..     143     176 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.03
       TPR_2  12 yklgdyeeAleafekAleldPn 33 
                 ++ g++  A++a++ A e dP 
  CCG92346.1 120 EREGELSLARDALNNAEEVDPL 141
                 6889999***********9996 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00045
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 ++l ++++++++++d ++A  ++ k  eld +
  CCG92346.1 144 DVLVRQAQLAERQKDGQRAYTYWSKIAELDRK 175
                 57899************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2350.19
//
Query:       CCG92347.1  [L=204]
Description: DNA-directed RNA polymerase specialized sigma subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-14   53.4   0.1    3.1e-14   52.4   0.1    1.5  1  Sigma70_r4_2     Sigma-70, region 4
      3e-14   52.5   0.1    4.9e-14   51.8   0.1    1.3  1  Sigma70_r2       Sigma-70 region 2
      7e-14   51.1   0.9    1.3e-13   50.2   0.1    1.9  2  Sigma70_r4       Sigma-70, region 4
    3.5e-06   27.0   1.7     0.0002   21.3   0.4    2.1  2  Sigma70_ECF      ECF sigma factor
     0.0014   18.3   0.0     0.0035   17.1   0.0    1.7  1  HTH_23           Homeodomain-like domain
     0.0026   17.7   0.4      0.012   15.6   0.1    2.2  2  HTH_Mga          M protein trans-acting positive regulator (M
     0.0058   16.6   0.1      0.019   15.0   0.0    2.0  2  HTH_29           Winged helix-turn helix
     0.0069   16.1   0.0      0.016   15.0   0.0    1.6  1  HTH_38           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.012   15.6   0.4      0.092   12.7   0.1    2.1  2  Phage_antitermQ  Phage antitermination protein Q
      0.021   15.4   0.0      0.046   14.3   0.0    1.6  1  DUF134           Protein of unknown function  DUF134
      0.029   13.9   0.0      0.058   12.9   0.0    1.6  1  GerE             Bacterial regulatory proteins, luxR family
       0.11   13.0   0.2       0.45   11.0   0.0    2.0  2  HTH_40           Helix-turn-helix domain
       0.18   11.3   0.0       0.46   10.0   0.0    1.7  2  HTH_Tnp_ISL3     Helix-turn-helix domain of transposase famil


Domain annotation for each model (and alignments):
>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.1   2.3e-17   3.1e-14       4      53 ..     142     191 ..     140     192 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 2.3e-17
                   HHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHH CS
  Sigma70_r4_2   4 lrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkk 53 
                   l +al++L+e+ r++++l +le+ls+ EIA+++g+segt++srl+ A k+
    CCG92347.1 142 LNDALSKLSEKHRAVVVLFDLEELSHSEIAKIMGCSEGTIRSRLFYAHKQ 191
                   5689****************************************977666 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.1   3.6e-17   4.9e-14       1      69 [.      33      99 ..      33     100 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 3.6e-17
                HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSS CS
  Sigma70_r2  1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrr 69
                lvery+++++r+ + +l +++d  D++ e+f+++++++  f+   g sf +w++ria n+ai + Rk +
  CCG92347.1 33 LVERYQKRLYRVIYGVLLHHEDTNDVLMETFIKAYKNIGGFR--IGASFYTWIYRIAINTAISFKRKSK 99
                79****************************************..6669******************975 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       2.1   2.9e+03      35      47 ..     128     140 ..     127     141 .. 0.75
   2 !   50.2   0.1   9.3e-17   1.3e-13       1      50 []     145     194 ..     145     194 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHH CS
  Sigma70_r4  35 erVrqiekrAlrk 47 
                  +Vrq e + l+k
  CCG92347.1 128 QAVRQMEIKELNK 140
                 5799999887776 PP

  == domain 2  score: 50.2 bits;  conditional E-value: 9.3e-17
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 aL++L+e++r v++l  +e+l+++EI++++g S++++r+++++A ++L+k
  CCG92347.1 145 ALSKLSEKHRAVVVLFDLEELSHSEIAKIMGCSEGTIRSRLFYAHKQLQK 194
                 89********************************************9986 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.013        18       6      46 ..      17      58 ..      15      69 .. 0.81
   2 !   21.3   0.4   1.5e-07    0.0002     118     181 ..     130     194 ..     112     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.013
  Sigma70_ECF  6 elleqvkdGdaeaaeqllelvydeLrrlagskl.knerreet 46
                 el+  +k+G+ +a + l e+++++L r+    l ++e  ++ 
   CCG92347.1 17 ELILRMKSGELDAFDILVERYQKRLYRVIYGVLlHHEDTNDV 58
                 578899*******************99987766577766655 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 1.5e-07
  Sigma70_ECF 118 dspdelleLdealerlls.ldpeqarlvelrkleGlsveEiAeklgvskrtverrlalaRawler 181
                    + e+ eL+  l+  ls l+++ + +v l  le ls  EiA+ +g+s+ t++ rl +a + l++
   CCG92347.1 130 VRQMEIKELNKVLNDALSkLSEKHRAVVVLFDLEELSHSEIAKIMGCSEGTIRSRLFYAHKQLQK 194
                  455667788888876555489999999*****************************999988876 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.6e-06    0.0035       3      35 ..     150     182 ..     148     194 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.6e-06
      HTH_23   3 sereRlrillllaeGlsvreIAreLgvsrrTvy 35 
                 se++R+ ++l  +e ls +eIA+++g+s+ T++
  CCG92347.1 150 SEKHRAVVVLFDLEELSHSEIAKIMGCSEGTIR 182
                 788899866666678*****************9 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.1   1.6e+03      20      31 ..     132     143 ..     130     154 .. 0.70
   2 !   15.6   0.1   8.6e-06     0.012      13      50 ..     158     198 ..     147     204 .] 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.1
     HTH_Mga  20 sltldelakeLg 31 
                  ++++el k L+
  CCG92347.1 132 QMEIKELNKVLN 143
                 577777777776 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 8.6e-06
     HTH_Mga  13 lLteneksltldelakeLglseltlqsdi....seLnelFpe 50 
                  L++  ++l+ +e+ak +g+se t++s++     +L+ l++ 
  CCG92347.1 158 VLFD-LEELSHSEIAKIMGCSEGTIRSRLfyahKQLQKLLKN 198
                 6888.8999******************985554455555555 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       7.8   1.1e+04      16      24 ..     127     135 ..     124     137 .. 0.73
   2 !   15.0   0.0   1.4e-05     0.019      10      30 ..     163     182 ..     153     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 7.8
      HTH_29  16 sqiAkllgl 24 
                  q+++++ +
  CCG92347.1 127 EQAVRQMEI 135
                 688998887 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.4e-05
      HTH_29  10 eGvstvsqiAkllglsrrtvy 30 
                 e++s +s+iAk++g+s+ t++
  CCG92347.1 163 EELS-HSEIAKIMGCSEGTIR 182
                 5565.***************8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-05     0.016      19      37 ..     163     181 ..     147     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
      HTH_38  19 eGlslreIArrLgrspsTI 37 
                 e ls +eIA+++g+s +TI
  CCG92347.1 163 EELSHSEIAKIMGCSEGTI 181
                 789**************** PP

>> Phage_antitermQ  Phage antitermination protein Q
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.31   4.3e+02      56      78 ..      18      40 ..      15      63 .. 0.89
   2 ?   12.7   0.1   6.7e-05     0.092      59     110 ..     145     196 ..     134     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.31
  Phage_antitermQ 56 cvarLkkkrpeelellvdyYvfg 78
                      + r+k+ + +++++lv++Y ++
       CCG92347.1 18 LILRMKSGELDAFDILVERYQKR 40
                     68899999999*********886 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 6.7e-05
  Phage_antitermQ  59 rLkkkrpeelellvdyYvfgvskraiarklkisekevrkklqkaegfiegcl 110
                       L+k  +++  ++v + + ++s  +ia+ +++se+++r +l  a + ++  l
       CCG92347.1 145 ALSKLSEKHRAVVVLFDLEELSHSEIAKIMGCSEGTIRSRLFYAHKQLQKLL 196
                      4677778888899999999**********************99988777665 PP

>> DUF134  Protein of unknown function  DUF134
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.4e-05     0.046      42      84 ..     156     198 ..     125     204 .] 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.4e-05
      DUF134  42 airlvdyedlkqeeaaklmGiskatlwrlltearkkiakalve 84 
                  + l d e+l++ e ak+mG s+ t+ + l  a k++ k l +
  CCG92347.1 156 VVVLFDLEELSHSEIAKIMGCSEGTIRSRLFYAHKQLQKLLKN 198
                 46799****************************9999887765 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.2e-05     0.058      18      37 ..     165     184 ..     145     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
                 S-HHHHHHHHTS-HHHHHHH CS
        GerE  18 ksnkeIAeelniSekTVkvh 37 
                 +s  eIA+++++Se T+++ 
  CCG92347.1 165 LSHSEIAKIMGCSEGTIRSR 184
                 6889*************986 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         2   2.8e+03      59      78 ..     128     144 ..     111     155 .. 0.54
   2 ?   11.0   0.0   0.00033      0.45       8      40 ..     159     192 ..     152     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2
      HTH_40  59 eaiekvgseklkpikealpe 78 
                 +a+++++   +k++ + l++
  CCG92347.1 128 QAVRQME---IKELNKVLND 144
                 3333333...3333333333 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00033
      HTH_40   8 ll.eeglsieeIAkerglkesTIegHLaelieeg 40 
                 l+  e ls  eIAk+ g +e+TI + L  + ++ 
  CCG92347.1 159 LFdLEELSHSEIAKIMGCSEGTIRSRLFYAHKQL 192
                 6667999******************999888775 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         4   5.5e+03      16      30 ..      79      94 ..      78      95 .. 0.72
   2 ?   10.0   0.0   0.00033      0.46      25      48 ..     163     185 ..     157     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4
  HTH_Tnp_ISL3 16 leayilellles.rsv 30
                  +  +i++ ++++ +s+
    CCG92347.1 79 FYTWIYRIAINTaISF 94
                  5678888888886666 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00033
  HTH_Tnp_ISL3  25 lesrsvkavArqlgvSwtTVwril 48 
                    e  s +++A+++g+S+ T++ +l
    CCG92347.1 163 EEL-SHSEIAKIMGCSEGTIRSRL 185
                   455.999*************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1230  (0.0686039); expected 358.6 (0.02)
Passed bias filter:                      805  (0.0448993); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1447.75
//
Query:       CCG92348.1  [L=185]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   13.7   0.6      0.038   13.1   0.6    1.2  1  DUF1908   Domain of unknown function (DUF1908)


Domain annotation for each model (and alignments):
>> DUF1908  Domain of unknown function (DUF1908)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.6   2.1e-06     0.038     178     218 ..      23      63 ..       8      81 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.1e-06
     DUF1908 178 rdclekseaklitsryfyelsenlerllqea..kekspeaaae 218
                 +  lek  +kl t +yf ++ +nl r l  +  keks ++   
  CCG92348.1  23 KTHLEKQTEKLATPEYFEQMHQNLHRRLRVEmiKEKSFSE--M 63 
                 5679*********************998765236666333..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1020  (0.0568911); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1392.78
//
Query:       CCG92349.1  [L=372]
Description: Serine protease Do (Heat-shock protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-15   56.4   0.0    1.5e-14   55.2   0.0    1.7  1  Trypsin_2    Trypsin-like peptidase domain
    1.2e-12   48.0   0.3    2.8e-12   46.8   0.0    1.8  2  PDZ_2        PDZ domain
    4.9e-08   33.2   0.0    9.8e-08   32.2   0.0    1.5  1  PDZ          PDZ domain
    1.6e-05   24.7   0.0    3.1e-05   23.7   0.0    1.5  1  PDZ_6        PDZ domain
    0.00096   19.0   0.0       0.52   10.1   0.0    2.3  2  Trypsin      Trypsin
  ------ inclusion threshold ------
       0.11   12.5   0.4       0.41   10.7   0.0    2.2  3  Tricorn_PDZ  Tricorn protease PDZ domain


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   4.9e-18   1.5e-14       1     150 []      71     206 ..      71     206 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 4.9e-18
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggeks 99 
                 +sGf+++s+g+++T+     ++++ a+     + + +  + +++ akv++ d+++ +A+l+v ++ ++++p+l+l+  +++++g+pv+ +Gyp   +  
  CCG92349.1  71 CSGFFINSEGVLVTA-----PDSQLAD-----SLFYVDYNAQWHLAKVIGIDERSGVAVLQV-EEGPKPFPFLKLAYGQEIPTGTPVVGIGYPYNLPA- 157
                 69********99998.....4444444.....4566789*************999*******.**************999999*********988888. PP

   Trypsin_2 100 gsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                  + s+G v g +  e  + +  +++ + ++ ++pG+ GGpl++s+G vvG+
  CCG92349.1 158 -CPSFGLVVGKDC-EYLNHFFPTTHYRINTKVNPGQIGGPLINSRGLVVGM 206
                 .899999999999.66666666677799**********************8 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.8   1.4e+04      13      24 ..     114     125 ..     108     126 .. 0.73
   2 !   46.8   0.0   9.3e-16   2.8e-12       3      79 ..     243     322 ..     241     325 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.8
                 ..-EEEEEE-TT CS
       PDZ_2  13 tggvlvvsVkeg 24 
                  +gv v +V+eg
  CCG92349.1 114 RSGVAVLQVEEG 125
                 359999999886 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 9.3e-16
                 ..XX------.....-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEE CS
       PDZ_2   3 lGvsvsdeed...tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktve 79 
                  Gv v++  +   +g+v+v+   +++P +++gl+ gD++++++gkk++sl+d+  +  + + G+++ ++vlRdgk  ++e
  CCG92349.1 243 VGVAVTKIGReeaAGKVVVARLFPNTPVSGSGLREGDIVVSINGKKITSLSDVMDASFFVSVGQKIPVKVLRDGKPIQFE 322
                 577777666666689999999*****************************************************987765 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   3.3e-11   9.8e-08      10      81 ..     241     312 ..     233     313 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 3.3e-11
                 SESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ  10 gglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                 g++G+ +     ++++  ++v+++ p+ +   +gl++GD+++s+Ng++++++s+   + +  + ++k+++++
  CCG92349.1 241 GWVGVAVTKIGREEAAGKVVVARLFPNTPVSGSGLREGDIVVSINGKKITSLSDVMDASFFVSVGQKIPVKV 312
                 67777777777777889*************************************************999988 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0     1e-08   3.1e-05       7      54 ..     266     312 ..     260     314 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1e-08
       PDZ_6   7 pgsPAdrAGlrvGDiilsvNGqpveglsladvaallr.gsagesvvlvv 54 
                 p++P    Glr GDi++s+NG+ +  +sl dv ++    s+g+++ ++v
  CCG92349.1 266 PNTPVSGSGLREGDIVVSINGKKI--TSLSDVMDASFfVSVGQKIPVKV 312
                 66677778****************..**999977655555666666555 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0018       5.4      14      40 ..      57      85 ..      45      87 .. 0.75
   2 !   10.1   0.0   0.00017      0.52     171     203 ..     182     214 ..     114     227 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0018
                TEEEEEETTC.EEEEEEEEEETTEEE.EE CS
     Trypsin 14 wqvslsvksg.khlCgGslisenwvl.TA 40
                  v +++++g + +C+G+ i+++ vl TA
  CCG92349.1 57 VRVRIEHRNGgESFCSGFFINSEGVLvTA 85
                4566666666999**********777577 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00017
                 TSSSBCTTTTTTSEEEETTTEEEEEEEEESSSS CS
     Trypsin 171 eggkdacqGDSGGPlvcsdgelvGivswgkgca 203
                 + + + ++G  GGPl++s g +vG+++++ +++
  CCG92349.1 182 RINTKVNPGQIGGPLINSRGLVVGMITMSLKEE 214
                 45568899*******************995554 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.6   1.1e+04      60      80 ..      45      65 ..      42      68 .. 0.71
   2 ?   -2.5   0.0       1.8   5.2e+03      36      50 ..     109     123 ..     100     126 .. 0.77
   3 ?   10.7   0.0   0.00014      0.41      32      62 ..     269     297 ..     255     320 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.6
                 HHHHHHTTTTSEEEEEEE-ST CS
  Tricorn_PDZ 60 iaelLvgkagkeveLtvkrkd 80
                 +++++++++++ v++++++ +
   CCG92349.1 45 VNKIFEENKNAVVRVRIEHRN 65
                 667778888888888887765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.8
                  GS---.TT-EEEEET CS
  Tricorn_PDZ  36 pGvnvreGdlilavd 50 
                   G++ r G ++l+v+
   CCG92349.1 109 IGIDERSGVAVLQVE 123
                  588888888888886 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00014
                  GGGGGS---.TT-EEEEETTEE-BTTB-HHH CS
  Tricorn_PDZ  32 PLaepGvnvreGdlilavdgepvskekgiae 62 
                  P + +G++  eGd++++++g+++++ +++  
   CCG92349.1 269 PVSGSGLR--EGDIVVSINGKKITSLSDVMD 297
                  66666766..**************9988743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2791.03
//
Query:       CCG92350.1  [L=308]
Description: Flagellar motor protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-10   40.7   0.4    2.1e-09   37.6   0.0    2.4  2  OmpA          OmpA family
     0.0083   15.7   1.9      0.011   15.3   1.9    1.1  1  Exonuc_VII_L  Exonuclease VII, large subunit
  ------ inclusion threshold ------
       0.23   11.7   2.0       0.42   10.9   2.0    1.3  1  KAR           Kidney androgen-regulated
       0.93   10.3   5.3         19    6.1   5.3    2.5  1  YMF19         Plant ATP synthase F0
        1.1    9.7  15.1       0.11   12.9   8.0    2.2  2  TBCA          Tubulin binding cofactor A
        1.3    9.4   5.7        4.7    7.6   5.7    1.9  1  DUF4199       Protein of unknown function (DUF4199)
        2.4    8.5   4.6          7    7.0   4.5    1.8  1  DUF948        Bacterial protein of unknown function (DUF948)
        3.6    6.7  10.6        5.1    6.3  10.6    1.2  1  TMPIT         TMPIT-like protein
        6.5    6.6  10.2        2.3    8.1   6.1    2.3  2  DivIC         Septum formation initiator


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.6      0.57   1.1e+03      32      51 ..     107     128 ..      70     155 .. 0.60
   2 !   37.6   0.0     1e-12   2.1e-09       2      95 .]     166     272 ..     165     272 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.57
                 EEEE-..--S---HHHHHHHHH CS
        OmpA  32 tveGh..tdaagseernweLSq 51 
                  ve      a+gs+++n  L++
  CCG92350.1 107 AVESKkmEEANGSTKENSSLTK 128
                 4444444455555555555544 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 1e-12
                 B-TTS--B-GGGHHHHHHHHHHHH.....S-S--EEEEE---S---HHH.......HHHHHHHHHHHHHHHHHH.TTSSGGGEEEEE-TT--------- CS
        OmpA   2 FapgsseLtpkaksaldkiaellk.....kpeqkitveGhtdaagseer.......nweLSqkRAeaVanylqn.egvppsrisvsgyGaerpitannt 87 
                 Fa g  +L+++ k  l+k+ ++ k      +e ki+v  +td+++ +++       nwe+S+ R  aV ++l++   +p+  +s+ + G+++pi++n+ 
  CCG92350.1 166 FAYGGIKLSTQGKVLLSKFLSVTKpflvkTQESKIEVCSFTDNDPPAQEvqdiyptNWEISAIRSAAVIRALIQiGQLPEGMFSLAAGGETNPIADNGL 264
                 999999****************999998555566*********8888888888899******************999********************** PP

                 -----EE. CS
        OmpA  88 aekkarnr 95 
                  e+k++nr
  CCG92350.1 265 LEGKEKNR 272
                 ****9997 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.9   5.7e-06     0.011     168     281 ..      49     159 ..      17     168 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.7e-06
  Exonuc_VII_L 168 kqrleklasrlkspeellerkrqrldeleerleralkkq...lkkkrerleelkerlkekleekkerlkklkerlelleekkerleeleeklealsp 261
                      lek+ + lk+ +ell++++q+ + + ++l+++l+++   lk+++e le+++++lk  +e+     kk++e   +++e+++  +ele+kl+a+  
    CCG92350.1  49 YISLEKTIRVLKEEDELLKQENQKQRAVVDQLQAELSQTgslLKSQEELLEKTTQSLK-AVES-----KKMEEANGSTKENSSLTKELENKLKAALS 139
                   4556677777788888888888887777777777766666667777777777776664.1111.....22222222456666666666666666554 PP

  Exonuc_VII_L 262 lkvLkrGyaivrk.edgkvvt 281
                   ++ +++G + v+  ++g vv+
    CCG92350.1 140 EE-IQKGESTVMLqKNGVVVR 159
                   44.355655555545555555 PP

>> KAR  Kidney androgen-regulated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.0   0.00021      0.42      11      92 ..      70     151 ..      62     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
         KAR  11 kelqdsiidllnsvsdqlasyegskapledstddelstdseqimdttyakskqiselstdvetvsssfleevtetseitvki 92 
                 ++ q +++d l +   q +s   s+  l + t + l++   + m+ +   +k +s l+++ e    + l e  ++ e+tv +
  CCG92350.1  70 NQKQRAVVDQLQAELSQTGSLLKSQEELLEKTTQSLKAVESKKMEEANGSTKENSSLTKELENKLKAALSEEIQKGESTVML 151
                 566899*******************999999999999998999*******************99999999999999999976 PP

>> YMF19  Plant ATP synthase F0
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.3    0.0094        19      12      72 ..      29      92 ..      25     154 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0094
       YMF19 12 ffWlclf....FitlYivllknilpkiarilklrkkllsslssevsklkkeqknlivskdsalan 72
                ffW+ l       ++Y++     l+k++r+lk + +ll++ ++ ++    +q +   s++ +l +
  CCG92350.1 29 FFWVSLSvflaATAVYFYSQYISLEKTIRVLKEEDELLKQENQ-KQRAVVDQLQAELSQTGSLLK 92
                9**9998633323467777777899999999999999999774.444444444444444444443 PP

>> TBCA  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   8.0   5.4e-05      0.11      10      63 ..      57     111 ..      50     119 .. 0.84
   2 ?    0.8   0.5      0.32   6.3e+02      13      46 ..     121     154 ..     117     165 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.4e-05
        TBCA  10 RlvKEe.asYekEleeqearleklkadgdedeydlkkqeevleetkamipdlkkr 63 
                 R++KEe ++ ++E ++q+a +++l+a+ ++    lk qee+le+t + ++ ++++
  CCG92350.1  57 RVLKEEdELLKQENQKQRAVVDQLQAELSQTGSLLKSQEELLEKTTQSLKAVESK 111
                 7777763789****************9877799****************999754 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.32
        TBCA  13 KEeasYekElee.qearleklkadgdedeydlkkq 46 
                 KE++s  kEle+  +a l +  ++g++   +l+k 
  CCG92350.1 121 KENSSLTKELENkLKAALSEEIQKGES-TVMLQKN 154
                 889999999875145666666666633.6666665 PP

>> DUF4199  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.7    0.0024       4.7      69     134 ..      24      87 ..      11     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0024
     DUF4199  69 afgfgflislvagllsavfqyiyfnfidpdfienyiaeilekleeakeesae.eenaemseeeikea 134
                 +fg++f+ + ++ +l a + y+y ++i    +e++i  ++e+ e +k+e+++  ++  + ++e+ ++
  CCG92350.1  24 GFGAVFFWVSLSVFLAATAVYFYSQYI---SLEKTIRVLKEEDELLKQENQKqRAVVDQLQAELSQT 87 
                 89*************************...6777777777777766666666566666666666543 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.5    0.0035         7      18      73 ..      56     119 ..      31     132 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0035
      DUF948  18 ivvllklkktldeaaatieele.......kqvdpilkevedllakvnelledvne.klekvdpl 73 
                 i+vl++  ++l++ ++  + +        +q++++lk  e+ll+k+ + l+ v++ k+e+ +  
  CCG92350.1  56 IRVLKEEDELLKQENQKQRAVVdqlqaelSQTGSLLKSQEELLEKTTQSLKAVESkKMEEANGS 119
                 3344444444444444444444333366666666777777777777777766665355555555 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  10.6    0.0025       5.1       8      91 ..      53     136 ..      47     162 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0025
       TMPIT   8 ekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlkevesllpk 91 
                 ek ++ l+e+ + +kq+ ++  +  ++++ e+++    lk+ ++ l+k+++s+k+ e++++ee + ++ke ++  ke+e+ l +
  CCG92350.1  53 EKTIRVLKEEDELLKQENQKQRAVVDQLQAELSQTGSLLKSQEELLEKTTQSLKAVESKKMEEANGSTKENSSLTKELENKLKA 136
                 555555666666666666666666666666666666666666666666665555555555555555555555555555555433 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.1    0.0011       2.3       6      51 ..      36      81 ..      32     108 .. 0.82
   2 ?   -1.3   0.2      0.97   1.9e+03      37      49 ..     120     132 ..     100     151 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0011
                XXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  6 llllifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLk 51
                ++l+ + ++ +++y +l++ i  l++e + lk+en++  a v++L+
  CCG92350.1 36 VFLAATAVYFYSQYISLEKTIRVLKEEDELLKQENQKQRAVVDQLQ 81
                5667777788889999999999999999999999999999888884 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.97
                 HHHHHHHHHHHCC CS
       DivIC  37 kaeneeLeaevkd 49 
                 ++en +L++e+++
  CCG92350.1 120 TKENSSLTKELEN 132
                 4555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2374  (0.132411); expected 358.6 (0.02)
Passed bias filter:                      871  (0.0485805); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.39
# Mc/sec: 2356.43
//
Query:       CCG92351.1  [L=61]
Description: 30S ribosomal protein S21 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-19   69.0  10.4    2.3e-19   68.9  10.4    1.0  1  Ribosomal_S21  Ribosomal protein S21
  ------ inclusion threshold ------
      0.033   12.8   1.2      0.034   12.8   1.2    1.0  1  Flu_NP         Influenza virus nucleoprotein
       0.33   10.7   2.8        1.1    9.1   2.8    1.7  1  XAP5           XAP5, circadian clock regulator


Domain annotation for each model (and alignments):
>> Ribosomal_S21  Ribosomal protein S21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9  10.4   3.8e-23   2.3e-19       1      54 [.       3      56 ..       3      57 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 3.8e-23
  Ribosomal_S21  1 qVvVkdgenierALkrfkrkveragvirevrrrryyekpsekrkrkkkearrrr 54
                   +V+Vk+ge+i++AL+r+krk++r+g +re+r r+ +ekp+ +r+rk+kear ++
     CCG92351.1  3 EVKVKKGESIDKALRRLKRKLDREGTLREARLRKAFEKPCNRRRRKAKEARLKI 56
                   59*************************************************876 PP

>> Flu_NP  Influenza virus nucleoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.2   5.6e-06     0.034     207     255 ..       6      53 ..       1      58 [. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.6e-06
                 XXXXXXXXXSXXTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      Flu_NP 207 vkGvGtlvdelirlikraiadrnllrdikakiayekillilknkfsaaa 255
                 vk  G  +d+++r +kr ++  + lr+ + + a+ek ++  + k + a+
  CCG92351.1   6 VK-KGESIDKALRRLKRKLDREGTLREARLRKAFEKPCNRRRRKAKEAR 53 
                 54.4667899******************************999988776 PP

>> XAP5  XAP5, circadian clock regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.8   0.00018       1.1      56     109 ..       8      61 .]       1      61 [] 0.74

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00018
        XAP5  56 kkkkpnvdtsflpkaldkereekeaaereeLrkeflalqeavkaeeieitfvfy 109
                 k  + +  +  l++ ld+e   +ea+ r++  k   + + + k+  ++i  +fy
  CCG92351.1   8 KGESIDKALRRLKRKLDREGTLREARLRKAFEKPCNRRRRKAKEARLKIYSSFY 61 
                 335556666777888888888888888888888888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1007  (0.056166); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 449.26
//
Query:       CCG92352.1  [L=331]
Description: Zn-dependent alcohol dehydrogenase (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-33  112.4   0.1    1.7e-32  111.5   0.1    1.4  1  ADH_N         Alcohol dehydrogenase GroES-like domain
      2e-05   25.7   0.0    3.2e-05   25.0   0.0    1.3  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.033   14.2   0.0    1.6  1  ADH_zinc_N    Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.1   2.8e-36   1.7e-32       1     109 []      25     133 ..      25     133 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 2.8e-36
                 TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSE CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvsldGgfaey 98 
                 pge+l++v ++giC++Dlh+++g + ++ k++l++GHE+vG+v ++g + k++++G+rV v++l + cg+C+ C +g+enlC++ +++g++ldGg+ae 
  CCG92352.1  25 PGEILLEVLVCGICRTDLHVVDG-ELPNPKPNLVPGHEVVGIVRKLGAGAKRFSIGQRVGVPWLGKtCGQCKFCLSGKENLCDHPEFTGYTLDGGYAEW 122
                 589********************.8**************************************9988******************************** PP

                 EEECGGGEEEE CS
       ADH_N  99 vvvpekklvkl 109
                 + ++e++++++
  CCG92352.1 123 MKADERFCYPI 133
                 ********986 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   5.3e-09   3.2e-05      31     129 ..     232     321 ..     220     325 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 5.3e-09
                   HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS-- CS
  ADH_zinc_N_2  31 ggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGklrpvvdrvfpleeaaeAhrylesgra 127
                   g  +l+ ++l+++++gG++v+ g  + ++  + p k  +g  ++++ +  +  + ++d  ee ++  +  k++++v+ vfpl+ea+eA+++l++g++
    CCG92352.1 232 G--SLIPQALQAVEKGGKVVCAGIYM-TDIPSFPYKILWGE-RQIVSVANL--T-RQD-GEEFFKIASNFKIQTHVE-VFPLNEANEALERLRKGKV 319
                   4..4568999999777***9998433.33333333323332.233333212..2.556.789**************8.******************9 PP

                   SS CS
  ADH_zinc_N_2 128 rG 129
                    G
    CCG92352.1 320 QG 321
                   99 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.5e-06     0.033      62     110 ..     227     273 ..     221     292 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.5e-06
                 EEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEEEEHHHHHHTT-EEE CS
  ADH_zinc_N  62 vfecvGsgatleaalkllkpgGrlvvvGg.gkgeeefdlrnlllkeksil 110
                 +f  vG  + +++al+++ +gG++v+ G+ +++  +f+ + l+  e++i+
  CCG92352.1 227 IFAPVG--SLIPQALQAVEKGGKVVCAGIyMTDIPSFPYKILW-GERQIV 273
                 555566..99******************977776667777666.333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2284.79
//
Query:       CCG92353.1  [L=48]
Description: hypothetical protein MFUM_680020 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 319.70
//
Query:       CCG92354.1  [L=63]
Description: hypothetical protein MFUM_680021 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 479.78
//
Query:       CCG92355.1  [L=73]
Description: hypothetical protein MFUM_680022 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 573.93
//
Query:       CCG92356.1  [L=825]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-24   86.5   0.0    1.9e-21   76.9   0.0    2.5  2  Glyco_trans_1_4  Glycosyl transferases group 1
    3.8e-16   59.4   0.0    1.1e-15   57.8   0.0    1.9  2  Glycos_transf_2  Glycosyl transferase family 2
    6.3e-15   55.7   0.0    1.1e-14   54.9   0.0    1.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    1.2e-05   24.9   0.0    9.9e-05   21.9   0.0    2.5  2  Glycos_transf_1  Glycosyl transferases group 1
    0.00011   22.2   0.0    0.00026   20.9   0.0    1.6  1  Glyco_trans_2_3  Glycosyl transferase family group 2
    0.00011   22.5   0.0    0.00029   21.2   0.0    1.7  1  Glyco_trans_1_2  Glycosyl transferases group 1
     0.0049   16.4   0.0     0.0093   15.5   0.0    1.5  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
     0.0049   17.3   0.0      0.028   14.9   0.0    2.2  2  Glyco_tranf_2_4  Glycosyl transferase family 2
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.021   14.3   0.0    1.4  1  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0033       6.6      31      81 ..      28      85 ..       6     103 .. 0.67
   2 !   76.9   0.0   9.6e-25   1.9e-21       4     134 .]     651     787 ..     648     787 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0033
                     HEEEEEES.....---..HHHHHHHT.T-T.TEEEE---..THHHHHHHH-SEEEE--...- CS
  Glyco_trans_1_4 31 dvrlvivG.....dgprpeeleelaa.gleerveftGfv..edlaellaaadvfvaPs...e 81
                     + +++++G     +g+      ++++ + +++v f+  +  +d+++ +a+ad+ v P+   e
       CCG92356.1 28 NSKFYVCGwffdaEGK----AAKQIKvQSKKDVFFCHPMerTDIQKKYASADLSVDPMcgfE 85
                     4578888855522222....222343344578*****998889***************7764 PP

  == domain 2  score: 76.9 bits;  conditional E-value: 9.6e-25
                      EEEES--.-G..G.GTHHHHHHHH.HHHH.H.H..EEEEEES---..HHHHHHHTT-T.TEEEE---THHHHHHHH-SEEEE--...---SHHH CS
  Glyco_trans_1_4   4 ilfvGrl.ee..nvkgvdllleav.pllrkk.d..vrlvivGdgprpeeleelaagleerveftGfvedlaellaaadvfvaPs...egfglkl 87 
                      +lfvG + ee  n +g+ ++ + v p+l+kk +  ++++ +G+   + e+ e+++ l  +++f+G vedl++++++++vf+aP+    g+++k+
       CCG92356.1 651 FLFVGYMgEEspNTDGLSWFSHYVlPHLKKKiPssFEVLAIGQV-SE-EFVEQLSPL--GIKFLGLVEDLQPFFEKCRVFIAPTryaAGIPMKV 740
                      799999976688*****************9984689******54.44.555566544..6************************7655****** PP

                      HHHHHTT-EEEE-TGGGTTT--...TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  88 lEamaaglpvVatdvggiaevv...gengllvppgdpealaeailrLled 134
                       Ea+++glpvVa+++ + +++    ge+ ll++ ++pe++a  +++L++d
       CCG92356.1 741 HEAASYGLPVVASQLLA-KQLAwipGEE-LLAA-DSPEDFAVCCEKLYQD 787
                      **************943.4444447876.7776.46***********998 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   5.7e-19   1.1e-15       1     169 [.     183     353 ..     183     354 .. 0.92
   2 ?   -2.9   0.0       2.5     5e+03      94     123 ..     522     550 ..     520     568 .. 0.80

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 5.7e-19
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      s+vi t N++++l +++ s+la    + +e+iv+D++StDet+ +l +     ++++ +r++    +  ++n+++  a+  y+l+l+ D + +p
       CCG92356.1 183 SIVISTRNRAELLYQCFQSILAY-VGLPYELIVADNASTDETPLLLAKT----EGIKTFRNDTDLEYLLSVNKAALLAKAPYLLLLNNDIILSP 271
                      8*********************9.*************************....69*************************************** PP

                      THHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS.......EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHC CS
  Glycos_transf_2  95 dwleklvealekdgadvvlgqrprifgetdeiernkrv.......generlyfkerkrslkgnlsfeigsaallrrealeel 169
                      + + ++++ +e  ++ +++g+  +++++t +      +       + ++ +   + + +  +++ +++  + l+rre+ e+l
       CCG92356.1 272 QSVDQMIRTMESYPRCAAVGCKLVRPDGTLQEAGSIVWadgsalaYGRNDPDPMRSEYNFVREVDYCSAACLLVRRELWEKL 353
                      ************9999999999999999999888876699999998888888888888888889999999999999987765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.5
                      TTHHHHHHHHHHH.TTCEEEEEEEEEECCC CS
  Glycos_transf_2  94 pdwleklvealekdgadvvlgqrprifget 123
                       ++le+++++ ++  +d ++++r ++f+  
       CCG92356.1 522 SERLEDFLQERKD-YYDFIFVSRIHNFVPV 550
                      5778888888888.9999999999998765 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   5.4e-18   1.1e-14       4     227 ..     182     411 ..     180     413 .. 0.88

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 5.4e-18
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDdD 97 
                      l++++ t n+++ l  +  s+la+   ++e++v ++ s++et   +        ++++++ +n+ +l+   +  ++n a   +k  ++ll++ D
       CCG92356.1 182 LSIVISTRNRAELLYQCFQSILAYVGLPYELIVADNASTDETPLLLAK------TEGIKTFRNDTDLE---YLLSVNKAALLAKAPYLLLLNND 266
                      89*********************88899*************9886654......56899*99999999...4555699999************* PP

  Glyco_tranf_2_3  98 tvvePdtlkrllqff.ltpkvgavgtpvfllnrstl.......vsalgalefaerhlrflaarral.g.vltlnGsgslirrevlkelegldp. 180
                       +++P +++++ +++  +p+++avg +++++ + tl       ++   al +++++ + ++  + + + v++ + +++l+rre+++ l+g dp 
       CCG92356.1 267 IILSPQSVDQMIRTMeSYPRCAAVG-CKLVRPDGTLqeagsivWADGSALAYGRNDPDPMRSEYNFvReVDYCSAACLLVRRELWEKLGGYDPq 359
                      ***************7777777776.5678777777777777788889*********9888886664569***********************6 PP

  Glyco_tranf_2_3 181 .lflltdDyelglrlrragfrtayvpgaavrev....fpsslkayikqrnRw 227
                       +    +D +l+++l++ g+++ y+p a+v ++    +p ++ ++  ++nRw
       CCG92356.1 360 yAPAYYEDSDLCMSLWAMGYKVLYQPAALVFHYefgsRPLETIKAMMEKNRW 411
                      666677***************************9877778899999999**9 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.69   1.4e+03      49      97 ..      30      78 ..      26      82 .. 0.67
   2 !   21.9   0.0     5e-08   9.9e-05      75     123 ..     707     754 ..     674     799 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.69
                     EEEEES......STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEE CS
  Glycos_transf_1 49 klviaG.....ngeeekelkklaeelelsdnviflgevsredleellknadifv 97
                     k+ ++G     +g+  k++k      + +++v+f   ++r+d+ + + +ad+ v
       CCG92356.1 30 KFYVCGwffdaEGKAAKQIKV-----QSKKDVFFCHPMERTDIQKKYASADLSV 78
                     566666655444444444443.....3567889999999999999999999877 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 5e-08
                      GGEEECCHSSSHHHHHHCESEEEEEESS.BSS-HHHHHHHHTT--EEEET CS
  Glycos_transf_1  75 viflgevsredleellknadifvlpsis.EgfGivllEAmaaglpviasn 123
                      ++flg v+  dl  +++++ +f++p ++  g ++ + EA ++glpv+as+
       CCG92356.1 707 IKFLGLVE--DLQPFFEKCRVFIAPTRYaAGIPMKVHEAASYGLPVVASQ 754
                      58888888..**************************************97 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.3e-07   0.00026       2     130 ..     260     402 ..     259     444 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.3e-07
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaaelas.pevaivqgpvl.vm...nvanwleelaalf..f.aedhgkdilvrealgrvvpsvGsgaflrrsalqev 87 
                       lll  D  l+p+++ + ++ ++s p++a+v ++ + ++   + a  +++   +   +  +d   +++  +   +v  +  ++ ++rr++++++
       CCG92356.1 260 LLLLNNDIILSPQSVDQMIRTMESyPRCAAVGCKLVrPDgtlQEAGSIVWADGSAlaYgRNDPDPMRSEYNFVREVDYCSAACLLVRRELWEKL 353
                      6889999999999*********97799999999977454667555555555544421555666666555555555666889************* PP

  Glyco_trans_2_3  88 ggwdgdes...svsEDfdmglrlqrkGyrvrfvpes.lv.keksplt...l 130
                      gg+d  ++   +  ED d++++l++ Gy+v + p++ ++ +e++++    +
       CCG92356.1 354 GGYD--PQyapAYYEDSDLCMSLWAMGYKVLYQPAAlVFhYEFGSRPletI 402
                      **99..55556*************************755355544443342 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.5e-07   0.00029       3      85 ..     727     810 ..     725     817 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.5e-07
  Glyco_trans_1_2   3 Lnpsrs.espnlrlfEaaacGafaltdda.egleelftpgkevilfedleelaekiryllanpeerraiaeaarervlaehtydh 85 
                      ++p+r+  ++ +++ Eaa  G ++++++    +  +  pg+e++ ++++e++a   ++l ++  ++++i+e a ++v+ +++ ++
       CCG92356.1 727 IAPTRYaAGIPMKVHEAASYGLPVVASQLlAKQLAW-IPGEELLAADSPEDFAVCCEKLYQDAFLWKKIRESALNKVKIDCDPKR 810
                      66777756799****************875444444.5999***********************************987776665 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.7e-06    0.0093      30     216 ..     210     391 ..     183     448 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.7e-06
  Glyco_tranf_2_2  30 ielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfissDkfekilklitikklrenidaavvlpv 123
                       eliv d+ S++++   +    + ++   +++  d  y    + N+ a  a++ ++l l+ D   s+  ++++++ +++      +   +v p 
       CCG92356.1 210 YELIVADNASTDETPLLLA---KTEGIKTFRNDTDLEY--LLSVNKAALLAKAPYLLLLNNDIILSPQSVDQMIRTMESYPRCAAVGCKLVRPD 298
                      6788888888888433332...2333334455544444..4577999999*************************999999999999******9 PP

  Glyco_tranf_2_2 124 vdlnkedsevlkdvedltassrvledllaakstlvkffapss.ssilinrraflevGGyDErfrGhgaEDfdlllRlakaikslekmpvellyk 216
                        l ++ s v  d+  l a +r   d +     +v+ +   s   +l++r+   ++GGyD ++    +ED dl + l +   ++   p+ l ++
       CCG92356.1 299 GTLQEAGSIVWADGSAL-AYGRNDPDPMRSEYNFVREVDYCSaACLLVRRELWEKLGGYDPQYAPAYYEDSDLCMSLWAMGYKVLYQPAALVFH 391
                      99988888888877665.566777799999999999988888678889999999*********88889*****999977655554666666554 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.4e-05     0.028       1      62 [.     189     249 ..     189     279 .. 0.77
   2 ?   -1.3   0.0       1.6   3.1e+03      14      55 ..     391     437 ..     385     455 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-05
  Glyco_tranf_2_4   1 rneadiLpeflahhla.lgf.drilvydndstDgtrailkelpevkllhvdksyederrqvell 62 
                      rn a++L ++ + +la +g   +++v+dn stD+t  +l++ + +k +++d++ e   +  ++ 
       CCG92356.1 189 RNRAELLYQCFQSILAyVGLpYELIVADNASTDETPLLLAKTEGIKTFRNDTDLE---YLLSVN 249
                      79999*******98884666347***************************99874...444444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Glyco_tranf_2_4  14 hlalgfdrilvydndstDgtrailkel.pevkllhvdksy....ede 55 
                      h+++g + +  +  + + + +++l+++ ++++l h d+      +d+
       CCG92356.1 391 HYEFGSRPLETIKAMMEKNRWKFLEKWkQQLQLMHRDDGDvlkaRDK 437
                      56666666666666667778888888844488888875333332333 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     1e-05     0.021      29     166 ..     255     407 ..     245     412 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1e-05
  Glyco_transf_21  29 akydllvisDsdvrvkpdyLeellaaled.pkvglVtslpv....gsdakg..laaaleaafl.ntlagvlqa...klsglgfavGksmalrre 111
                      ak+++l+++  d++++p+ ++++ +++e+ p+++ V +  v    + +++g  ++a+  a+      +  + +   ++ +++ +  +++++rre
       CCG92356.1 255 AKAPYLLLLNNDIILSPQSVDQMIRTMESyPRCAAVGCKLVrpdgTLQEAGsiVWADGSALAYgRNDPDPMRSeynFVREVDYCSAACLLVRRE 348
                      999**************************99999997744313213333336777777666653333555555557789*************** PP

  Glyco_transf_21 112 aLeaiGGfea.ladeLAeDyalgkllraaGlkvvlspap.iaqtsvpr..rsslralla 166
                        e++GG+ +  a    eD  l + l a G+kv   pa+ +++ + ++   ++++a+++
       CCG92356.1 349 LWEKLGGYDPqYAPAYYEDSDLCMSLWAMGYKVLYQPAAlVFHYEFGSrpLETIKAMME 407
                      ********982344566****************99988834466666557667776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 5601.24
//
Query:       CCG92357.1  [L=48]
Description: hypothetical protein MFUM_680024 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       148  (0.00825478); expected 358.6 (0.02)
Passed bias filter:                      120  (0.00669307); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 330.01
//
Query:       CCG92358.1  [L=158]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1250.10
//
Query:       CCG92359.1  [L=172]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
       0.01   15.7   0.9      0.012   15.4   0.9    1.3  1  DUF3841         Domain of unknown function (DUF3841)
  ------ inclusion threshold ------
      0.043   13.9   0.5      0.043   13.9   0.5    2.2  2  Suppressor_APC  Adenomatous polyposis coli tumour suppressor 
       0.18   12.2   5.1       0.14   12.6   3.4    1.7  1  DUF1104         Protein of unknown function (DUF1104)


Domain annotation for each model (and alignments):
>> DUF3841  Domain of unknown function (DUF3841)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.9     2e-06     0.012      68     135 ..      90     159 ..      48     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2e-06
     DUF3841  68 rekallrksektvileLevpkeevllsdfdkWnki..LnesYipedeedekafeeelekygvneaeavts 135
                 r+k      +k   l L++++e++  ++ ++W+k   +++++i e+e+ +k+  +ele+   +e++   +
  CCG92359.1  90 RQKVRQLARSKARQLGLSLNEEQLNAFEKSYWHKRleIEKKFIEETENRRKELAKELEDALQKEFSNLST 159
                 56666677889999********************9555799****************9987655555444 PP

>> Suppressor_APC  Adenomatous polyposis coli tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.5   7.3e-06     0.043      28      65 ..      78     114 ..      72     119 .. 0.87
   2 ?   -0.6   0.3      0.23   1.4e+03       7      23 ..     131     147 ..     126     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.3e-06
  Suppressor_APC  28 aRdWylqqlrevqerqkslgkvetqfdlqtdliqerle 65 
                     ++ W+lq++  ++++ ++l+++++  +l   l++e+l+
      CCG92359.1  78 EKGWFLQRIAIMRQKVRQLARSKA-RQLGLSLNEEQLN 114
                     678********************9.8888888888886 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.23
  Suppressor_APC   7 rlkeLeqekdlLlqgLe 23 
                      ++e e +++ L ++Le
      CCG92359.1 131 FIEETENRRKELAKELE 147
                     56777777777777776 PP

>> DUF1104  Protein of unknown function (DUF1104)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.4   2.3e-05      0.14      26      67 ..     124     165 ..     110     171 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTTS-HHHHHHH CS
     DUF1104  26 kmevaKrlkslkekekkkfkkklkeaaeknlekmtvkefekl 67 
                 ++e++K+  + +e+ +k+  k+l++a +k++++++ k  ++l
  CCG92359.1 124 RLEIEKKFIEETENRRKELAKELEDALQKEFSNLSTKSVMEL 165
                 79**********************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1518  (0.0846673); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1346.97
//
Query:       CCG92360.1  [L=120]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.9   0.0       0.13   12.6   0.0    1.2  1  DUF3040   Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.1e-06      0.13      22      67 ..      21      72 ..      14      91 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.1e-06
     DUF3040 22 DPklaaal....rggaar.arrrslrrlavlavllfvaGllllvlG.vaaaa 67
                DP + +++    r+++ + ++rr+l +++   +l++v+ + ll +G +  ++
  CCG92360.1 21 DPYFLERFqarlRSEKIQnEKRRQLITYLASFCLVLVFSASLLAVGkICMQS 72
                66666666443378888844455454544445555555********888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 875.38
//
Query:       CCG92361.1  [L=337]
Description: Uncharacterized 37.6 kDa protein in cld 5'region [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-55  188.6   0.0    2.2e-55  188.4   0.0    1.1  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    2.4e-53  181.1   0.0    3.2e-53  180.7   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
      2e-18   66.4   0.0    2.5e-18   66.1   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    5.1e-14   52.1   0.0    5.5e-13   48.7   0.0    2.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    2.3e-13   49.9   0.0    3.9e-13   49.2   0.0    1.4  1  RmlD_sub_bind    RmlD substrate binding domain
    1.4e-06   27.7   0.5    0.00034   19.9   0.5    2.4  1  NAD_binding_4    Male sterility protein
    0.00029   20.8   0.0    0.00066   19.6   0.0    1.5  1  KR               KR domain
    0.00032   20.2   0.4     0.0016   18.0   0.0    2.0  2  adh_short        short chain dehydrogenase
     0.0055   16.6   0.0      0.015   15.2   0.0    1.7  1  NAD_binding_10   NAD(P)H-binding
  ------ inclusion threshold ------
       0.13   11.9   0.1       0.28   10.8   0.0    1.6  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
       0.14   12.7   0.0       0.31   11.7   0.0    1.6  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
       0.22   11.4   0.0        1.1    9.1   0.0    2.1  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4   0.0   1.5e-58   2.2e-55       1     329 [.       5     323 ..       5     326 .. 0.85

  Alignments for each domain:
  == domain 1  score: 188.4 bits;  conditional E-value: 1.5e-58
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    ++TG+aGf G  +a++Lle g++v+ i++++  ++++  e+     k    +  ++ ++Dl +++++e+++a  +p+ v+++AAq  V++s+++P 
     CCG92361.1   5 FVTGGAGFLGFSTAKRLLETGHQVVAIDNLNPYYSVKLKEARLAILK--QYSACQFERVDLMEKKKIEEIFAWFKPECVIHFAAQAGVRYSLTNPY 98 
                    59***************************998888776665554433..34689****************************************** PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS--.---SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS-TT CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpf.yPrsPYaaaKlyadwivvnyreayglfavngilfnhesprrget 191
                     ++e nv G++ +Le +r++g+    +f+ aS+s vYG  +++p++ + p  +P s Yaa+K +a+ i+++y + + ++++  ++f  ++p   ++
     CCG92361.1  99 SYVESNVSGMVPILESCRKYGVY---HFLLASSSSVYGMNRQIPFKVSDPAdHPVSIYAATKKAAELIAHAYSHLFSIPISCMRFFTVYGPWGRPD 191
                    *********************85...8******************99999648***************************************8777 PP

                    SCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---.EEE-TT-EEECHHCHHCCHHCCCHHHHHH............T CS
  GDP_Man_Dehyd 192 fvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkped.yviatgethsvrefvelaflelgktiewegkgeeevgrakes 286
                    +   k+   ++ i l+k ++ ++G+++ kRd+++v+D+vea+ +++ +  +++     +g + sv + +   + ++g++  +  +  + v+ +++ 
     CCG92361.1 192 MAYYKF---AQSIFLNK-SIDVYGEGKLKRDYTYVDDVVEAIIRLMDRAPQRQrESEIDGMNPSV-STAPFRIHNIGNRQPA--EVIDLVKLIEKY 280
                    666655...55566666.45569******************999998754433033334444444.3445556666654333..345666677788 PP

                    TGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHH CS
  GDP_Man_Dehyd 287 gkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelv 329
                      ++ ++++ +  pg+v+l+++d+s +++e+g+ p++s+ee++
     CCG92361.1 281 MGKKATIHYLPIPPGDVELTYADTSTLEKEIGYAPTTSLEEGI 323
                    88899************************************98 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.7   0.0   2.1e-56   3.2e-53       1     229 [.       4     236 ..       4     246 .. 0.95

  Alignments for each domain:
  == domain 1  score: 180.7 bits;  conditional E-value: 2.1e-56
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfie 89 
                 i+VtG++Gf+G  ++k+lle g++v+++d+l+     +++e            ++ ++dl++++++e++f+ ++p++vih+Aa++gv+ s ++p  ++e
  CCG92361.1   4 IFVTGGAGFLGFSTAKRLLETGHQVVAIDNLNPYYSVKLKEARlailkqysacQFERVDLMEKKKIEEIFAWFKPECVIHFAAQAGVRYSLTNPYSYVE 102
                 89*****************************88888887777799****************************************************** PP

                 HHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHH CS
   Epimerase  90 knlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgpl.kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvip 187
                 +n+ g++ +le +rk+gv  +l +sSs+vYG + ++p + +    p  +p s Yaa+K a+e +++ay + + +++ ++r f++yGp    g+++  + 
  CCG92361.1 103 SNVSGMVPILESCRKYGVYHFLLASSSSVYGMNRQIPFKVSD---PAdHPVSIYAATKKAAELIAHAYSHLFSIPISCMRFFTVYGPW---GRPDMAYY 195
                 ************************************977777...777****************************************...99****** PP

                 HHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHH CS
   Epimerase 188 alirkilegkqevtllgdgtalRdflyveDvaeaillvlehv 229
                 +++++i ++k ++ ++g+g+ +Rd+ yv+Dv+eai++++++ 
  CCG92361.1 196 KFAQSIFLNK-SIDVYGEGKLKRDYTYVDDVVEAIIRLMDRA 236
                 **********.****************************983 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   1.7e-21   2.5e-18       2     242 ..       6     246 ..       5     288 .. 0.80

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 1.7e-21
   3Beta_HSD   2 vtGgaGFlGralvkeLvrleelkevrvlD.......lrespelleelskvnvkkviegDvtdkdkleeale..gvdvvihlaslvdvag.kltedeimk 90 
                 vtGgaGFlG +  k+L+++++  +v ++D       ++ ++  l  l++    ++  +D+++k+k+ee     + ++vih a+   v+   ++  ++ +
  CCG92361.1   6 VTGGAGFLGFSTAKRLLETGH--QVVAIDnlnpyysVKLKEARLAILKQYSACQFERVDLMEKKKIEEIFAwfKPECVIHFAAQAGVRYsLTNPYSYVE 102
                 9*******************5..899999999999877777777888888888899***********976522778*******99999746777899** PP

   3Beta_HSD  91 vnvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkll 189
                  nv G   +le+c+k gv  ++  Ss +v g n ++ ++            ++++y+ +K+ aE l+ +a  + ++        ++R  ++yG+  +  
  CCG92361.1 103 SNVSGMVPILESCRKYGVYHFLLASSSSVYGMN-RQIPFK----VSDPADHPVSIYAATKKAAE-LIAHAYSHLFSI----PISCMRFFTVYGPWGRPD 191
                 *******************************94.344555....3344556899*******998.888998855554....5789*********76554 PP

   3Beta_HSD 190 vp..llkqlaklglalfkigdeevlsdrvYvgNvawahi.lAaralqdpkkkssva 242
                 ++   + q++ l++++  +g+ + + d++Yv+ v+ a+i l  ra q + ++s++ 
  CCG92361.1 192 MAyyKFAQSIFLNKSIDVYGEGKLKRDYTYVDDVVEAIIrLMDRAPQRQ-RESEID 246
                 44004456666788999*********************93333443433.444444 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   3.7e-16   5.5e-13       1     171 [.       4     183 ..       4     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 3.7e-16
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-.TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkk.kklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlv 93 
                      ++vtG++G +G +  +++l++  + + + + + +   ++++   + lk+ +  ++e      d+ +k+++e+++  +k+++v+h AA   V   
       CCG92361.1   4 IFVTGGAGFLGFSTAKRLLETGHQVVAIDNLNPYYSVKLKEARLAILKQySACQFE----RVDLMEKKKIEEIFAWFKPECVIHFAAQAGVRYS 93 
                      78*********************999999999999999999854444440334444....78******************************** PP

                      HHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE...............GGGSS--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EE CS
  Polysacc_synt_2  94 eenpleaiktNvlgtenvieaaieagvkkvvliSt...............DKAvnPtnvmGatKrlaekllqalakeseekktkfvvvRfGNV 171
                       +np++ ++ Nv g+  ++e + ++gv +++l S+               D A +P++++ atK++ae+++ a+++     +  +++ Rf  V
       CCG92361.1  94 LTNPYSYVESNVSGMVPILESCRKYGVYHFLLASSssvygmnrqipfkvsDPADHPVSIYAATKKAAELIAHAYSHLF---SIPISCMRFFTV 183
                      *******************************998544444444444444499999***************99998876...566666666555 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   2.6e-16   3.9e-13       2     156 ..       3     188 ..       1     246 [. 0.82

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 2.6e-16
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.........................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre.........................eldltdaeavaellkeakpdvvvnaAAytavDkaEseee 72 
                    ki vtG+ G lG   ak+l e g++v+a+++                          ++dl ++++++e+++ +kp++v++ AA   v    +++ 
     CCG92361.1   3 KIFVTGGAGFLGFSTAKRLLETGHQVVAIDNLnpyysvklkearlailkqysacqfeRVDLMEKKKIEEIFAWFKPECVIHFAAQAGVRYSLTNPY 98 
                    699**************************87789************************************************************** PP

                    HHHHHHTHHHHHHHHHHHHCT-.EEEEEEEGGGS-S-TTS-B-TTS--.--SSHHHHHHHHHHHHHHHH-SSEEE....EEE-SEESSSS CS
  RmlD_sub_bind  73 aayavnaeavealAeaaaavga.lLihvStDyVFdGekkrpYeeddet.sPlnvYGrtKlaGEqavlaagkkali....vRtswvygekg 156
                    +  + n+ +   + e ++++g+ +++  S+  V+  +++ p++ +d+  +P+++Y++tK a E    a+++ + i    +R+  vyg  g
     CCG92361.1  99 SYVESNVSGMVPILESCRKYGVyHFLLASSSSVYGMNRQIPFKVSDPAdHPVSIYAATKKAAELIAHAYSHLFSIpiscMRFFTVYGPWG 188
                    *********************8569999****************998638*************998887665444333378888887644 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.5   2.3e-07   0.00034      80     256 ..      68     228 ..       6     229 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.3e-07
                    HHHHH..HHH--EEEE--SS-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETT CS
  NAD_binding_4  80 dlqel..aeevdviihsaAtvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklk 170
                    +++e+  + + +++ih aA+  + +++ +    ++ Nv G++ +le ++k     ++l  S++ v+g ++ ++   ++           +  +  +
     CCG92361.1  68 KIEEIfaWFKPECVIHFAAQAGVRYSLTNpysYVESNVSGMVPILESCRKYGVY-HFLLASSSSVYGMNR-QI---PF-----------KVSDPAD 147
                    4444422336679******99999988875557899***************999.888888866666666.34...12...........2222333 PP

                    TCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE--SSST---TTSHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHHHH CS
  NAD_binding_4 171 glpntYeqsKalaEklvrearrrsglpvvivRpsiitgesktGwingsdlgirgllgliakgvlpeilgdkeavldlvpvDyvana 256
                         Y  +K +aE + +++++   +p++ +R  +++g    G ++     ++ +  +i  ++  +++g+ + + d++ vD v++a
     CCG92361.1 148 HPVSIYAATKKAAELIAHAYSHLFSIPISCMRFFTVYG--PWGRPDM---AYYKFAQSIFLNKSIDVYGEGKLKRDYTYVDDVVEA 228
                    34458****************9999****999999987..3333333...334455555555555566666666666666666665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.4e-07   0.00066       4     149 ..       5     140 ..       3     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.4e-07
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS...--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsa.aadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 ++tGG+G LG ++a+ l+e g + +++   ++  + + ++a++a l++    +++ ++D+ +k+++e++++ +k e      vih A  +  +     +
  CCG92361.1   5 FVTGGAGFLGFSTAKRLLETGHQVVAIDNLNPyYSVKLKEARLAILKQ-YSACQFERVDLMEKKKIEEIFAWFKPE-----CVIHFAAQAGVR----YS 93 
                 69*********************9999888863444555566666666.5679999*****************955.....599999876654....44 PP

                 HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHH CS
          KR 102 aedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanY 149
                   +  + +++ v+G+  + e +++  + +f+l SS ++++g++ q  +
  CCG92361.1  94 LTNPYSYVESNVSGMVPILESCRKYGVYHFLLASS-SSVYGMNRQIPF 140
                 55556677889999999999999999999988777.567898888765 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.1e-06    0.0016       1      70 [.       2      75 ..       2      89 .. 0.71
   2 ?   -0.3   0.2      0.42   6.2e+02     146     163 ..     150     167 ..     146     172 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.1e-06
                SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHH CS
   adh_short  1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalaiqvDvtdreevealvek 70
                k ++vtG+++ +G  +ak+l++ G +vv++d+ +      +ke + +     +   + +vD+ +++++e+++++
  CCG92361.1  2 KKIFVTGGAGFLGFSTAKRLLETGHQVVAIDNLNPYYSVKLKEARLAilkqYSACQFERVDLMEKKKIEEIFAW 75
                689**************************998654433333333322221134455566777777777777665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.42
                 BHHHHHHHHHHHHHHHHH CS
   adh_short 146 vaaYsAsKaavagltrsl 163
                 v+ Y+A+K a + ++++ 
  CCG92361.1 150 VSIYAATKKAAELIAHAY 167
                 689*******98887765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     1e-05     0.015       1     131 [.       8     163 ..       8     171 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1e-05
                     TTTSHHHHHHHHHHHHC-T-EEEEEETT..........HHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-S...EEEES---TCC......... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRn..........peklaeleaeeglevvegdvtdvedlaealkgad...aVvsalggggk......... 73 
                     G+ G  G   +k+ll+  gh+v+a+  n          +++la l++ ++++   +d++++++++e ++      ++ +a+ +g +         
      CCG92361.1   8 GGAGFLGFSTAKRLLET-GHQVVAID-NlnpyysvklkEARLAILKQYSACQFERVDLMEKKKIEEIFAWFKpecVIHFAAQAGVRysltnpysy 100
                     89999999999*****9.59999973.33344444443556666667789999999***999999999854433355566655555556555444 PP

                     .HHHH....HHHHHHHHHHCT--EEEEEEETTTTS...GCGCHHHHHHHHCCHHHHHHHHHHHHHH CS
  NAD_binding_10  74 .deeg....aknivdaakeagvkRfvlvsaigvgd...evpgefgewnkellkaylaakraaeell 131
                      +  +    ++ i++ +++ gv +f+l s+  v+    ++p ++++ +++ ++ y+a k+aae l+
      CCG92361.1 101 vE--SnvsgMVPILESCRKYGVYHFLLASSSSVYGmnrQIPFKVSDPADHPVSIYAATKKAAE-LI 163
                     42..05577*********************988752115555555555555555555555555.44 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00018      0.28       7      31 ..       9      33 ..       2      53 .. 0.83
   2 ?   -3.5   0.0       4.3   6.4e+03      95     112 ..     217     234 ..     214     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
                    --STTHHHHHHHHHHCTSEEEEE-S CS
  UDPG_MGDP_dh_N  7 GlGYvGlvtaavlaeighevigvDi 31
                    G+G++G  ta  l e gh+v+ +D+
      CCG92361.1  9 GAGFLGFSTAKRLLETGHQVVAIDN 33
                    79**********************6 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.3
                     B-THHHHHHHHHHHHHHH CS
  UDPG_MGDP_dh_N  95 aDlkyvesaarsiaealk 112
                      D +yv +++++i + ++
      CCG92361.1 217 RDYTYVDDVVEAIIRLMD 234
                     488999999999987665 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0002      0.31       6      77 ..       9      84 ..       3      94 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
                   TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.....-EEECECHHHHHH..H-SEEEE-S-HHHHHHH CS
  F420_oxidored  6 GaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.....vkvtavdneeaae..eadvvvlavkpedveev 77
                   GaG +g++ a++ll++g   h++v + + np    +l+e+        ++++ +  +++e  + + ++  +kpe v  +
     CCG92361.1  9 GAGFLGFSTAKRLLETG---HQVVAIDNLNPYYSVKLKEARLailkqYSACQFERVDLMEkkKIEEIFAWFKPECVIHF 84
                   9****************...****9999999988888876554556666666666666663333446666666666555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00074       1.1       6      44 ..       9      51 ..       3      88 .. 0.69
   2 ?   -0.8   0.0      0.83   1.2e+03     139     161 ..     266     288 ..     252     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00074
                --SCCHHHHHHHHHHTT-EEEEE-S....-HHHHHHHHHHHHH CS
     3HCDH_N  6 GaGtmGagiaavfasagleVvlvdi....seealekalekiek 44
                GaG +G + a+ ++++g++Vv +d      + +l++a+ +i k
  CCG92361.1  9 GAGFLGFSTAKRLLETGHQVVAIDNlnpyYSVKLKEARLAILK 51
                89**********************9555534444444444444 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.83
                 SSTTT--EEEEEE-TT--HHHHH CS
     3HCDH_N 139 nPpplmkLvEvvrgekTseetva 161
                  P++++ Lv ++++   +++t++
  CCG92361.1 266 QPAEVIDLVKLIEKYMGKKATIH 288
                 69999****99999988888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 2451.40
//
Query:       CCG92362.1  [L=495]
Description: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.4e-149  496.0   0.0   8.4e-149  495.8   0.0    1.0  1  UbiD      3-octaprenyl-4-hydroxybenzoate carboxy-lyase


Domain annotation for each model (and alignments):
>> UbiD  3-octaprenyl-4-hydroxybenzoate carboxy-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  495.8   0.0  4.7e-153  8.4e-149       1     404 [.      10     433 ..      10     435 .. 0.96

  Alignments for each domain:
  == domain 1  score: 495.8 bits;  conditional E-value: 4.7e-153
                 HHHCCCTTSEEEEESEB-TBTHHHHHHHHH..HHHT--EEEEEEBT...TB.TT-EEEE-TTS-HCHHHHHHTS-GHHHHHHHHHHHHHS..-...... CS
        UbiD   1 lealekagelvrikeevdpelEiaeiarrv..leeggpallFenvk...gkgskfpvltnlfgtrervalalglssleeileklaellepkpp...... 88 
                 +++le+agel+ri+e+v++elEi+ +a+r      gg all e++    gk s+fp+l+n+fg+++r++++lg ++l e++e++++ll+p+ p      
  CCG92362.1  10 IQKLEEAGELIRISEPVHTELEITVLADREmkSPGGGYALLIEKPIllkGKISRFPLLINAFGSWKRMEIVLG-RKLAELVEEIESLLKPEGPksifeg 107
                 789***************************98889999*******99976689********************.89*************988799**** PP

                 ............---EE--GCG-GGGSEE.ECCCCC--..HHHS---BSSTTSSS-EEECEEEEEE-TTTT-EEEEEEEEEEEETTEEEE--TTTHCHH CS
        UbiD  89 ............ippkvvesekapcqeev.vlegddvd..LskLPvltlwpgDgGpyitlglvitrdpetgkrnlgiyRmqvldknklglhwqihkgga 172
                              +p+ v    apcqeev +le++++   L +LPvl++wp+DgG+yitl++v++ dp tgkrn+g+yR+q++d++++++hwq hk ga
  CCG92362.1 108 wkmirkgidffkSQPRLVG--LAPCQEEVvLLEDENPPmgLLDLPVLKCWPKDGGAYITLPQVFSVDPYTGKRNVGMYRIQIFDQKTAAMHWQVHKVGA 204
                 ************9*****5..5*******87775444355*********************************************************** PP

                 HHHHHHHHCCT--EEEEEEES--HHHHHHCTS--TTT-TCHHHHHHHHTS--EEEE-SSSSSEEETT-SEEEEEEEECCEEEECTTTC-TTSCEEC--C CS
        UbiD 173 ehlrkakkkggeplpvavaiGvdPaltlaAvaplPeglsElefaGalrgepvelvkcetvdlevpadAEivleGeidpgetapEGPfgdhtGyysevrd 271
                 +h ++++k+g  ++pva+++G+dP++t+aA+aplP+g++E+ faG+lr+e +++vkc+t++levpa+++iv+eG++dp +++pEGPfgdhtG+y ++ d
  CCG92362.1 205 RHGQEYAKEG-IQMPVAICLGGDPLMTFAATAPLPDGVDEVVFAGFLRKEGIPMVKCKTIELEVPAESDIVIEGVVDPLDLRPEGPFGDHTGFY-TPID 301
                 **********.79*********************************************************************************.6779 PP

                 CEEEEEEEEEEE-TT-EEEE-SSSCCSHHHHCHHHHHHHHHHHHHHCCSTTEEEEEE-GGGTTTCEEEEECHHHTCCHHHHHHHHHHCCTTGGC-SEEE CS
        UbiD 272 efpvfkVtaithRkdpiypttvvgkppeedallgkalealflpllkkqvpevkdvhlpeeggfhllavvsikkrypghakkvmealwalkqqlsltKlv 370
                  +pvf+ +ait Rk++++p+t+vgkpp+ed++lg+   +lflpllk+++pe++++ lp+eg+fh+l++vsikk+yp +a kvm++lw+++q ++++K++
  CCG92362.1 302 LYPVFHAKAITFRKKAVFPATIVGKPPMEDYYLGTTSLKLFLPLLKMNFPEIVNIALPPEGVFHNLLFVSIKKQYPYQAYKVMHGLWGMGQ-MMFSKII 399
                 9******************999*******************************************************************88.******* PP

                 EEEETTS-TTSHHHHHHHHHHC--CCCCEEEECC CS
        UbiD 371 ivvDedvdvrdlkevlwaiatrvdpdrDlviieg 404
                 ivvDedvdv++ +evl +++ +vdp+rD+++++g
  CCG92362.1 400 IVVDEDVDVDNTSEVLFHLCANVDPERDFLFTRG 433
                 ******************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3554.55
//
Query:       CCG92363.1  [L=231]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-30  104.5   0.1    4.4e-30  104.1   0.1    1.2  1  Ysc84     Las17-binding protein actin regulator


Domain annotation for each model (and alignments):
>> Ysc84  Las17-binding protein actin regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.1   2.4e-34   4.4e-30       2     127 ..     107     224 ..     106     225 .. 0.94

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 2.4e-34
       Ysc84   2 gvgaGfqiGvdiydcvlvlntkealeaftkktrvslGgdlsvaaGpvgaggeaeaaaaaklkapvysysksrGlyaGvsldgtviterkdaNaafYgek 100
                 g+g+G+q+G + +++v+++ntk+a+++f+k+++++l g+++ +aGp+ ++           k+ +y+y +s+G+++G++l+g  i+e kd+N+++Y+++
  CCG92363.1 107 GMGFGLQAGGETSHYVIIMNTKKAVNTFAKGGKFKLKGEMEGVAGPTTESEHK-------PKSHIYVYKRSKGFFGGLALSGLDIAESKDTNKRYYHKD 198
                 89********************************************7766552.......3579*********************************76 PP

       Ysc84 101 gvsveqILrgevpwpaaakeLlevlka 127
                  +++++IL+g+v++p++ak+L+++l+a
  CCG92363.1 199 -LTASEILSGKVAVPQGAKKLINALNA 224
                 .***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1508.07
//
Query:       CCG92364.1  [L=94]
Description: putative 4Fe-4S ferredoxin [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-09   36.6   3.2    4.5e-09   36.4   3.2    1.1  1  ETF_QO    Electron transfer flavoprotein-ubiquinone oxidoredu
    4.6e-05   23.2  10.7       0.02   15.0   2.0    2.3  2  Fer4_2    4Fe-4S binding domain
    0.00031   21.3  12.2      0.012   16.2  12.7    2.1  2  Fer4_7    4Fe-4S dicluster domain
     0.0016   18.6  13.5      0.003   17.7  13.6    1.4  1  Fer4_9    4Fe-4S dicluster domain
     0.0052   16.9  15.4      0.021   14.9  15.7    1.7  2  Fer4_10   4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.022   15.2   9.0        0.3   11.5   0.8    2.2  2  Fer4_8    4Fe-4S dicluster domain
      0.024   14.7  14.2       0.19   11.9   3.9    2.3  2  Fer4_6    4Fe-4S binding domain
        1.3    9.7  16.5       0.55   10.9   3.6    2.4  2  Fer4_4    4Fe-4S binding domain
          2    8.6  16.2       0.75   10.0   3.9    1.9  2  Fer4_21   4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> ETF_QO  Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   3.2   2.3e-12   4.5e-09      23     103 ..      19      91 ..       4      92 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 2.3e-12
                 --SEEESSTTHHHHTHHHHHS-THHHH-TTS-EEEEETTTTSSEEEEE-CCC--S--HHHHH-T.T--EEE---STT-C--- CS
      ETF_QO  23 pvhLklkdaevavkvnlekyagpeqryCPagvyeivedeeakekklqinaqnCvhCktCdikdp.sqniewvvPeGggGPky 103
                 + h+k+k++e    +++  y++ ++  CPag y   e+e     ++++ +  C+ C tC+i    ++ni+w+ P Gg G  y
  CCG92364.1  19 RPHIKIKNRE----TCTLCYDKSCTVLCPAGCYRKNETE-----EVTLITDGCLECGTCQIICMeHKNIQWEYPRGGFGILY 91 
                 5566666654....55678**************988777.....46777899********98652689*********99777 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   2.0     1e-05      0.02       6      22 .]      26      44 ..      20      44 .. 0.80
   2 !   13.3   1.6   3.3e-05     0.066       4      20 ..      56      72 ..      53      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1e-05
      Fer4_2  6 dtdrCigCg..aCvsaCPa 22
                ++++C+ C   +C+  CPa
  CCG92364.1 26 NRETCTLCYdkSCTVLCPA 44
                69******556**888**8 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.3e-05
      Fer4_2  4 vvdtdrCigCgaCvsaC 20
                   td C++Cg+C+  C
  CCG92364.1 56 TLITDGCLECGTCQIIC 72
                567899*******9888 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   3.1   8.8e-05      0.17      20      51 ..      11      45 ..       4      46 .. 0.79
   2 !   16.2  12.7   5.9e-06     0.012       1      49 [.      29      73 ..      29      76 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.8e-05
      Fer4_7 20 deeenekgtekveid.pekClgCga..CvavCPtg 51
                + + +++g+++++i+  e+C+ C+   C   CP+g
  CCG92364.1 11 NRYRVDEGRPHIKIKnRETCTLCYDksCTVLCPAG 45
                455667789999996479*****9888******98 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 5.9e-06
      Fer4_7  1 rCigC..gaCvaaCpvkaieldeeenekgtekveidpekClgCgaCvavCP 49
                +C+ C  + C++ Cp+++ + +e       e+v++  + Cl Cg C+  C 
  CCG92364.1 29 TCTLCydKSCTVLCPAGCYRKNET------EEVTLITDGCLECGTCQIICM 73
                5999*878************9885......689*****************6 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7  13.6   1.5e-06     0.003       2      48 ..      30      74 ..      29      77 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.5e-06
      Fer4_9  2 CtgC..gaCveaCpagvvvedaaerkarlraaseeaCigCgaCveaCpk 48
                Ct C  ++C+  Cpag +++ + e+   ++      C++Cg+C  +C +
  CCG92364.1 30 CTLCydKSCTVLCPAGCYRKNETEEVTLITD----GCLECGTCQIICME 74
                ****6667************99999999866....5***********87 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9  15.7   1.1e-05     0.021       3      55 ..      24      72 ..      22      73 .. 0.86
   2 !   11.7   2.6   0.00011      0.22       4      21 ..      57      73 ..      54      84 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
     Fer4_10  3 vidddtCirCg..kCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaC 55
                +++++tC+ C    C+  CPa      + + ++e e+v    + C +cg C+ +C
  CCG92364.1 24 IKNRETCTLCYdkSCTVLCPA------GCYRKNETEEVTLITDGCLECGTCQIIC 72
                6799******9989*******......666677777777789***********99 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
     Fer4_10  4 idddtCirCgkCvkaCPa 21
                + +d C++Cg+C+  C +
  CCG92364.1 57 LITDGCLECGTCQIIC-M 73
                56789***********.5 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.8    0.0015         3      45      64 ..      24      45 ..       3      46 .. 0.69
   2 ?   11.5   0.8   0.00015       0.3      48      63 ..      59      74 ..      47      84 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0015
      Fer4_8 45 eealwsCttc..gaCtevCpvg 64
                 ++ ++Ct c  ++Ct+ Cp g
  CCG92364.1 24 IKNRETCTLCydKSCTVLCPAG 45
                455679****4456******86 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00015
      Fer4_8 48 lwsCttcgaCtevCpv 63
                 + C++cg C+  C +
  CCG92364.1 59 TDGCLECGTCQIICME 74
                5677777777777755 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.9   9.6e-05      0.19       5      23 ..      26      46 ..      22      47 .. 0.91
   2 ?    8.4   2.6    0.0012       2.3       9      21 ..      62      74 ..      59      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.6e-05
      Fer4_6  5 dpdkCigCgd..CvrvCPega 23
                +++ C+ C+d  C++ CP+g 
  CCG92364.1 26 NRETCTLCYDksCTVLCPAGC 46
                799*****999*******985 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0012
      Fer4_6  9 CigCgdCvrvCPe 21
                C+ Cg C ++C e
  CCG92364.1 62 CLECGTCQIICME 74
                99*********75 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   5.1     0.038        76       2      17 .]      28      45 ..      26      49 .. 0.89
   2 ?   10.9   3.6   0.00027      0.55       2      14 ..      60      72 ..      59      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.038
      Fer4_4  2 erCigCg..sCvaaCPqg 17
                e+C+ C   sC+  CP g
  CCG92364.1 28 ETCTLCYdkSCTVLCPAG 45
                78****9889******65 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00027
      Fer4_4  2 erCigCgsCvaaC 14
                + C++Cg C ++C
  CCG92364.1 60 DGCLECGTCQIIC 72
                67*********** PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   4.5     0.031        63      33      56 ..      21      46 ..      10      49 .. 0.73
   2 ?   10.0   3.9   0.00038      0.75       6      26 ..      60      78 ..      55      83 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.031
     Fer4_21 33 vlkvv.edeCvGC..nlCssvCPvedc 56
                ++k+   ++C+ C  + C+  CP  +c
  CCG92364.1 21 HIKIKnRETCTLCydKSCTVLCPA-GC 46
                455543789999966689999995.77 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00038
     Fer4_21  6 dkCigCgkCliaCedtshqai 26
                d C++Cg C i C +  h+ i
  CCG92364.1 60 DGCLECGTCQIICME--HKNI 78
                78***********97..5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 665.26
//
Query:       CCG92365.1  [L=432]
Description: Protein fixC [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-09   35.5   2.0     0.0029   17.2   0.0    2.7  3  DAO            FAD dependent oxidoreductase
    1.4e-08   34.4   0.0    5.1e-07   29.2   0.0    2.4  2  FAD_binding_3  FAD binding domain
    1.8e-08   34.2   0.0    2.6e-08   33.6   0.0    1.2  1  FAD_oxidored   FAD dependent oxidoreductase
    7.2e-08   31.9   0.7    2.6e-05   23.5   0.3    2.2  2  FAD_binding_2  FAD binding domain
    1.1e-07   31.4   0.6    4.1e-05   23.0   0.1    2.3  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.4e-07   30.6   0.5     0.0015   17.3   0.0    2.5  3  HI0933_like    HI0933-like protein
    2.1e-07   30.4   0.0    1.8e-06   27.3   0.0    2.1  1  Thi4           Thi4 family
    1.3e-06   27.8   0.5     0.0019   17.4   0.1    2.3  2  GIDA           Glucose inhibited division protein A
    3.8e-05   23.8   0.1    0.00012   22.2   0.1    2.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0048   16.2   0.3      0.013   14.7   0.2    1.8  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.021   13.4   0.0      0.041   12.4   0.0    1.5  1  GDI            GDP dissociation inhibitor
        0.1   13.2   0.0          9    6.9   0.0    2.6  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.22   10.5   0.2       0.29   10.1   0.2    1.4  1  Lycopene_cycl  Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.3   3.1e-06    0.0043       1      46 [.       6      51 ..       6      73 .. 0.83
   2 ?   -1.2   0.0      0.87   1.2e+03      17      44 ..      70      95 ..      67     106 .. 0.79
   3 !   17.2   0.0   2.1e-06    0.0029     150     210 ..     111     171 ..     100     202 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.1e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEES CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhs 46
                d +++G+G  G ++Ay La  g  V+ le+g +   g+    +++l++
  CCG92365.1  6 DCIVVGAGPGGTAAAYTLASNGlnVIQLERG-EYP-GSKNVQGAVLYA 51
                789****************999*********.555.566666666655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.87
                HHHHTTEEEEESSSSTTSSGGGSSEEEE CS
         DAO 17 eLarrgVtllekgdiagsgaSgrnsgll 44
                +La++ V +++k+     g+++r+++l 
  CCG92365.1 70 FLAEQRVWIIDKD-AYV-GTTHRTAALN 95
                688888******9.555.7999999875 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEEEEEEEEEE--GGGHHHHHTT CS
         DAO 150 aalaraaealGveilegtevtgleeedgkvwgve.rttpgendaadavVnaaGawsdllgll 210
                 +++ ++a+++Gv ++ +t+v +l +e ++v gv+ + ++ge    + v++a G+ s l++++
  CCG92365.1 111 RWFSKKAQEAGVLLICETTVLDLIKEKERVIGVRtDREDGELYG-EVVILADGVNSMLARKA 171
                 78899*****************8676789****75333355444.88*******99766332 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   3.7e-10   5.1e-07       2     177 ..       5     176 ..       4     195 .. 0.79
   2 ?    2.2   0.0     0.062        86     287     312 ..     299     324 ..     288     353 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 3.7e-10
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSS.CCSSS--EEEHHHHH.HHHHTT-H...HHHHHHSEECCCCEEEEEEECCCCCEEEEEHHC CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrstt.vvlpradglnqrtme.llrqlGle...drilaegapnelmgealynelsdtpkaradlel 92 
                    +d ++VGaGp G  +a  L++ G +v+ +e+ +   +++ ++ +l   ++e ++ +  ++   +r+lae ++  + ++a  ++     ++ a l+ 
     CCG92365.1   5 YDCIVVGAGPGGTAAAYTLASNGLNVIQLERGEYPgSKNVQGAVLYANSLEkIIPEFRMDaplERFLAEQRVWIIDKDAYVGT----THRTAALN- 95 
                    6889***************************987626777**********954555555411156666665555555554444....56667777. PP

                    HHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEE CS
  FAD_binding_3  93 esspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefe 177
                         + +++    ++r  +++a+e+g+ +  +t v+ l +++e v  + +d+e+ge      + ++ aDG++S  ++++g++ e
     CCG92365.1  96 -WDNADRYTILRAPFDRWFSKKAQEAGVLLICETTVLDLIKEKERVIGVRTDREDGEL---YGEVVILADGVNSMLARKAGFRKE 176
                    .44455555667789************99999999999***************99976...7899****************9854 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.062
                    EE-GGGTEEE-STTSHHHHHHHHHHH CS
  FAD_binding_3 287 flaGDAaHihpPtgGqGlNtaiqDav 312
                    +++GDAa  +   +  G+N+a++   
     CCG92365.1 299 MVVGDAAMFVNSIHREGSNLAMESGR 324
                    689*******************8665 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.9e-11   2.6e-08       1     135 [.       6     153 ..       6     173 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.9e-11
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdig..nkaeeqvvtgiareflerlrq....rgga....rlkkrskw.ntfep 86 
                   D +VvG+gp+G+aAA++ a +G +v+ +e+ ++ G    +g+v       + ++e+      ++fl++ r     ++++    +++++ +w n+   
    CCG92365.1   6 DCIVVGAGPGGTAAAYTLASNGLNVIQLERGEYPGSKNVQGAVLYANSleKIIPEFRMDAPLERFLAEQRVwiidKDAYvgttHRTAALNWdNADRY 102
                   89***************************************99666652233444666777777777776666545555776566688888878889 PP

  FAD_oxidored  87 evakavleeml....aeagvtvllntrlvevekegkriesvtveskegrktir 135
                   ++++a ++ +     +eagv ++ +t++ + +ke++r+ +v++ ++  + ++ 
    CCG92365.1 103 TILRAPFDRWFskkaQEAGVLLICETTVLDLIKEKERVIGVRTDRE--DGELY 153
                   9999999999999999******************99******9543..44444 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.3   1.9e-08   2.6e-05       1      36 [.       6      41 ..       6      54 .. 0.92
   2 !    6.8   0.0    0.0022         3     147     186 ..     113     150 ..      78     185 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.9e-08
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36
                   D iV+G+G +G aAA+++a +Gl+v+ +e +++ g+
     CCG92365.1  6 DCIVVGAGPGGTAAAYTLASNGLNVIQLERGEYPGS 41
                   89***************************9998766 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0022
                    HHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTC CS
  FAD_binding_2 147 lvesarkagvdfqerteadeLivedgrvtGavvenpesgr 186
                    + ++a++agv +  +t +++Li e++rv G+     ++ +
     CCG92365.1 113 FSKKAQEAGVLLICETTVLDLIKEKERVIGVRTD--REDG 150
                    567899999*********************8766..2222 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   2.9e-08   4.1e-05       1      41 [.       5      44 ..       5      93 .. 0.75
   2 !    6.2   0.0    0.0038       5.3     183     238 ..     107     164 ..      97     177 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.9e-08
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcl 41
                 +d++v+G+Gp+G+aaa tla +g++v+ + ++g+ ++ + +
   CCG92365.1  5 YDCIVVGAGPGGTAAAYTLASNGLNVIQL-ERGEYPGSKNV 44
                 689*************************9.66666665544 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0038
                  HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE..EEETTSCEEEESEEEE-S-EE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 183 kelsaaleealekeGvevklgtsvkeidgngekle..vvledgeeidadlvvvavGvr 238
                    + ++  ++ ++ Gv + ++t+v ++++++e++    ++ +  e+  + v++a Gv 
   CCG92365.1 107 APFDRWFSKKAQEAGVLLICETTVLDLIKEKERVIgvRTDREDGELYGEVVILADGVN 164
                  567889999***********************44433334444448888899998885 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.1e-06    0.0015       2      38 ..       6      42 ..       5      46 .. 0.95
   2 !   10.8   0.0    0.0001      0.14     115     167 ..     113     166 ..     106     173 .. 0.93
   3 ?   -2.7   0.1       1.3   1.8e+03     267     307 ..     379     418 ..     323     426 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.1e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HH CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrK 38
                 d iv+G+G+ G  aA ++a++g +V+ le+++ +g+K
   CCG92365.1  6 DCIVVGAGPGGTAAAYTLASNGLNVIQLERGEYPGSK 42
                 89*********************************99 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0001
                  HHHHHHHHT-EEE-S--EEEEECETTE.EEEEE..TTEEEEESEEEE----SS- CS
  HI0933_like 115 llkelkeagvklrletevksvekeedgkfrvkt.kseeeleadklvlAtGGlSi 167
                  + k+++eagv l  et+v ++ ke+++++ v+t ++++el  + ++lA G +S+
   CCG92365.1 113 FSKKAQEAGVLLICETTVLDLIKEKERVIGVRTdREDGELYGEVVILADGVNSM 166
                  67899****************************77999************9997 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.3
                  ECSTTS-...HHHHHHHHHHHTTTSBHHHHHTTTS-HHHHH CS
  HI0933_like 267 dllPdldaeelkaalekekekeskkslknalaellpkrlve 307
                     P++ +++l + l+ +    ++ + k++++++l+kr v 
   CCG92365.1 379 TTYPEIMNDSLFSLLKVDGV-DKRTKEKETIKNILKKRSVS 418
                  44455555555555554432.22234455555555555555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.3e-09   1.8e-06      18     137 ..       5     145 ..       2     152 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.3e-09
                 EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTB....SEEE....EETTTHHHHHHTT---EEESSEEEESEHHHHHH....... CS
        Thi4  18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlf....saiv....vrkpakelLdelgikyedegdyvvvkdaalfts....... 101
                  D ++vGaG+ G +aay+la + +l+v+ ler   pG     G  l+    ++i+    +  p + +L e  +   d++ yv   + + +         
  CCG92365.1   5 YDCIVVGAGPGGTAAAYTLASN-GLNVIQLERGEYPGSKNVQGAVLYanslEKIIpefrMDAPLERFLAEQRVWIIDKDAYVGTTHRTAALNwdnadry 102
                 699*******************.**************98888888772222466666557788999**************9988774333211111222 PP

                 HH........HHHHHTSTTEEEEESEEEEEEEEETBTEEEEEEE CS
        Thi4 102 tl........lskvlqlanvkllnavaveDlivregegvaGvvi 137
                 t+         sk  q a+v l+  ++v Dli  + e+v Gv +
  CCG92365.1 103 TIlrapfdrwFSKKAQEAGVLLICETTVLDLIKEK-ERVIGVRT 145
                 22111112225777778888888888888887665.88888766 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.4e-06    0.0019       1      26 [.       6      31 ..       6      59 .. 0.89
   2 !    8.6   0.0   0.00065       0.9      88     150 ..     100     163 ..      78     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.4e-06
                CEEEE-SSHHHHHHHHHHHHTT--EE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvl 26
                d+iV+G+G  G++AA+++a  G++v+
  CCG92365.1  6 DCIVVGAGPGGTAAAYTLASNGLNVI 31
                79*********************997 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00065
                 EEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETT.S-EEEECEEEE--TT CS
        GIDA  88 lraqvdrelyskevteklenepnleiieeeveeliveekkvkgvvted.getikakavviatGt 150
                  r  + r  + +++ +k ++   l i+e +v +li e+++v gv+t++ + ++  ++v++a G 
  CCG92365.1 100 DRYTILRAPFDRWFSKKAQEAGVLLICETTVLDLIKEKERVIGVRTDReDGELYGEVVILADGV 163
                 5666778889999999999999**********************997615689999*****996 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   8.9e-08   0.00012       1      32 [.       9      40 ..       9      77 .. 0.87
   2 ?   -2.7   0.0       5.2   7.2e+03      21      38 ..      75      92 ..      65     102 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 8.9e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   +vGaG +G +aAy+La +g++v  le+++++G
     CCG92365.1  9 VVGAGPGGTAAAYTLASNGLNVIQLERGEYPG 40
                   8*****************************99 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.2
                   EEEEE-SSSSSSGGG-EE CS
  NAD_binding_8 21 dvlllekrdrlGGraasy 38
                   +v +++k  ++G   +++
     CCG92365.1 75 RVWIIDKDAYVGTTHRTA 92
                   788999999999776665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   9.8e-06     0.013       1      31 [.       8      37 ..       8      42 .. 0.93
   2 ?   -2.1   0.0       1.3   1.8e+03     225     266 ..     121     162 ..      78     168 .. 0.50

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.8e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgn 31
                 i++GaGP G aaa++l  +gl +++ lE+g+
   CCG92365.1  8 IVVGAGPGGTAAAYTLASNGL-NVIQLERGE 37
                 89*******************.7999**996 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
  Pyr_redox_3 225 ekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatG 266
                  + + + +++ ++ ikeke+ + v+t++++     + v+la G
   CCG92365.1 121 GVLLICETTVLDLIKEKERVIGVRTDREDGELYGEVVILADG 162
                  434444444444455555544444444333222333333333 PP

>> GDI  GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     3e-05     0.041       1      74 [.       1      80 [.       1      84 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
                XXXEECEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG...-EE..-.HHHHHHHH-TTHHHHHHH--GGG--EE CS
         GDI  1 mdeeydvivlGtGlkecilsGllsvdgkkvlhldrndyyGges...asl..t.leqlyerfkleekpeeklGkdrdwnvd 74
                m+e+yd iv+G+G      +  l+ +g  v++l+r +y G++    a l  + le++  +f+ + + e  l ++r w +d
  CCG92365.1  1 MKEKYDCIVVGAGPGGTAAAYTLASNGLNVIQLERGEYPGSKNvqgAVLyaNsLEKIIPEFRMDAPLERFLAEQRVWIID 80
                89*************************************98752224343324889999999998888888999999998 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0066         9       3      35 ..       8      40 ..       6      75 .. 0.85
   2 ?    3.4   0.0     0.084   1.2e+02      43      78 ..     110     145 ..      99     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0066
                EEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  3 vvvGgGyiglElAgalaelgkkVtvversdkll 35
                +vvG+G  g  +A +la  g +V  +er++ + 
  CCG92365.1  8 IVVGAGPGGTAAAYTLASNGLNVIQLERGEYPG 40
                7***************************99887 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.084
                 HHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  43 skilqeklekngievllntkveeiegsedgvesvkl 78 
                  +++ +k ++ g+ ++ +t+v  + ++++ v +v++
  CCG92365.1 110 DRWFSKKAQEAGVLLICETTVLDLIKEKERVIGVRT 145
                 68999******************9988887888876 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00021      0.29       1      36 [.       6      39 ..       6     175 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00021
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   D +v+GaGp g + A  l  a  gl+v+ +e ++ +
     CCG92365.1  6 DCIVVGAGPGGTAAAYTL--ASNGLNVIQLERGEYP 39
                   89****************..**********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3317.54
//
Query:       CCG92366.1  [L=374]
Description: Protein fixB [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-39  133.3   0.0    1.3e-38  132.7   0.0    1.2  1  ETF             Electron transfer flavoprotein domain
      1e-33  115.2   1.4    1.9e-33  114.4   1.4    1.5  1  ETF_alpha       Electron transfer flavoprotein FAD-binding do
  ------ inclusion threshold ------
       0.26   11.2   1.5         11    5.9   0.0    3.0  3  L_biotic_typeA  Type-A lantibiotic


Domain annotation for each model (and alignments):
>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   0.0   2.2e-42   1.3e-38       1     176 [.      28     206 ..      28     210 .. 0.92

  Alignments for each domain:
  == domain 1  score: 132.7 bits;  conditional E-value: 2.2e-42
                 EEEEE-EC.CCCE-HHHHHHHHHHHHHHHHHT--EEEEEEES....S-..CHHHHHHCT-SEEEEEE-GGGSS--CCHHHHHHHHHHHHC--SEEEEES CS
         ETF   1 vlvlaehgvdgklnpvdlealeaArrlkekaggevtavvvGppeaeea..lrealaamGadkvilvddpalagydaeatakalaalikkedpdlvlaga 97 
                 ++v++e++ ++k++pv+ e+l++A  l++ +g +v avv+G +++++    ++a+a +Gad v+ v dp+la y++++ ++ l++l+kk++p++ l+ga
  CCG92366.1  28 IWVFIEQE-EAKVHPVSWELLGKACVLAKFLGVDVGAVVFGGNQEVVDtiSKDAIA-YGADIVYQVVDPSLADYRSDPFTECLVQLVKKYKPEILLLGA 124
                 59*****8.******************88899**********65555585556777.****************************************** PP

                 SCCHHHHHHHHHHHCT-EEEEEESEEEEETCC..EEEEEECCCCTEEEEEE-T.SSSEEEEE-TTSS----S-TT---EEEE CS
         ETF  98 taigkqvaprlAalLgvplitdvteleveggk..ltvtRpieggnglaevvea.dlpavltvrpgafepaaimaakkkevee 176
                 t+  +++a  +A  L+++l++d+tel+++ ++  l +tRp++gg+ l++++++  +p+++tvrpg+f+ + ++  +k+ + +
  CCG92366.1 125 TSLSRDLASSVATFLETGLTADCTELTINLENrsLEATRPTFGGSLLCTILTLnYRPQMATVRPGVFPIPLPNTDRKGMIIR 206
                 *************************999655567*******************9***************9999999988765 PP

>> ETF_alpha  Electron transfer flavoprotein FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   1.4   3.1e-37   1.9e-33       3      84 .]     234     315 ..     232     315 .. 0.98

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 3.1e-37
                 TTT-S-EEEE-GGGSSGGGHHHHHHHHHHHT-EEEE-HHHHTTTSS-CCCB-SSSS-----S-EEEES----HHHHGGGTT- CS
   ETF_alpha   3 LeeakvvvsgGrGlkskenlelleelaealgaavgasRavvdagwipeerqvGqtGktvaPklyiavGisGaiqhlaGmkes 84 
                 L++a+vv++gGrGlk++++++ll+ela  lg++vg +R+vv+agw+++erq+GqtGkt++Pk+yiavGisGa+qh +G++++
  CCG92366.1 234 LSQADVVIGGGRGLKQASHFSLLRELAMLLGGEVGGTRPVVQAGWLEAERQIGQTGKTIRPKVYIAVGISGAVQHRVGIEKA 315
                 89*****************************************************************************985 PP

>> L_biotic_typeA  Type-A lantibiotic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0019        11      23      38 ..      65      79 ..      63      83 .. 0.89
   2 ?   -1.3   0.1      0.33     2e+03      21      30 ..     238     246 ..     235     249 .. 0.85
   3 ?    2.5   0.1     0.022   1.3e+02      18      30 ..     257     269 ..     255     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0019
  L_biotic_typeA 23 ilGGkgsgvikTiShe 38
                    + GG  + v+ TiS++
      CCG92366.1 65 VFGG-NQEVVDTISKD 79
                    6799.9*********9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.33
  L_biotic_typeA  21 dqilGGkgsg 30 
                     d ++GG g+g
      CCG92366.1 238 DVVIGG-GRG 246
                     779***.988 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.022
  L_biotic_typeA  18 eELdqilGGkgsg 30 
                      EL ++lGG+ +g
      CCG92366.1 257 RELAMLLGGEVGG 269
                     7********7443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2736.12
//
Query:       CCG92367.1  [L=279]
Description: Protein fixA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-46  158.0   0.0    2.8e-46  157.7   0.0    1.1  1  ETF       Electron transfer flavoprotein domain


Domain annotation for each model (and alignments):
>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.7   0.0   1.6e-50   2.8e-46       1     178 [.      22     210 ..      22     214 .. 0.93

  Alignments for each domain:
  == domain 1  score: 157.7 bits;  conditional E-value: 1.6e-50
                 EEEEE-EC.CCCE-HHHHHHHHHHHHHHHHHT--EEEEEEES....S-CHHHHHHCT-SEEEEEE-GGGSS--CCHHHHHHHHHHHHC....--SEEEE CS
         ETF   1 vlvlaehgvdgklnpvdlealeaArrlkekaggevtavvvGppeaeealrealaamGadkvilvddpalagydaeatakalaalikke....dpdlvla 95 
                 ++++ ++gv+++lnp+dl ale+A++lk+  g  +t++++Gp +ae alr+al+ +Gad++il++d+a+ag+d++at++alaa+++k+    ++d+v+a
  CCG92367.1  22 TGTIMRQGVPAILNPYDLFALEKALELKDVYGSFLTVLSMGPLQAEAALRKALS-YGADEAILLSDRAFAGSDTLATSYALAAALRKIdsyrKIDIVFA 119
                 5799*************************99899***********999******.*********************************88888****** PP

                 ESSCC.H..HHHHHHHHHHCT-EEEEEESE...EEEETCCEEEEEECCCCTEEEEEE-TSSSEEEEE-TTSS--.....--S-TT---EEEE-- CS
         ETF  96 gatai.g..kqvaprlAalLgvplitdvte...leveggkltvtRpieggnglaevveadlpavltvrpgafep.....aaimaakkkeveeve 178
                 g+++i g  +qv+p +A +Lg++l+t+v e   ++ e++k+ v+R  e+  g+ +vv+++lp+++t+  g         +++ +a+k++v+ ++
  CCG92367.1 120 GKQTIdGdtGQVGPGVARRLGLQLLTYVQEikhIDYEKKKVLVHRKSEK--GI-QVVSSQLPCLMTILDGNSSIryaslPNMIRAAKAPVKIWN 210
                 *****98***********************4444445445*********..**.**************9999989999999999999*999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1910.02
//
Query:       CCG92368.1  [L=135]
Description: Nitrogenase-stabilizing/protective protein nifW [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-34  116.1   1.7      1e-33  115.8   1.7    1.1  1  NifW      Nitrogen fixation protein NifW
  ------ inclusion threshold ------
      0.028   14.5   0.1      0.065   13.3   0.1    1.6  1  HTH_16    Helix-turn-helix domain
      0.048   12.8   0.1      0.052   12.7   0.1    1.0  1  DUF5031   Domain of unknown function (DUF5031)


Domain annotation for each model (and alignments):
>> NifW  Nitrogen fixation protein NifW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8   1.7   1.7e-37     1e-33       2      98 ..      19     123 ..      18     124 .. 0.92

  Alignments for each domain:
  == domain 1  score: 115.8 bits;  conditional E-value: 1.7e-37
        NifW   2 lleelkelssaeeflefleveydpkvvnvnRLHILkrfsqylaeedeaeea.deeealakaralLerAYedfvessaleekvfkVfkeaak.......a 92 
                 +l+++++l++ae+f++++ev+yd +v++v+RLHIL+rf++y+a+++ + ++ ++ee+++++ +lL+rAYedfv+s+a++ekvfkVfke+ +       +
  CCG92368.1  19 ILKQMEKLEAAEDFFKLFEVPYDLRVLRVYRLHILQRFHDYIAAASLDISSkTDEEIKQSYAELLARAYEDFVHSNAQNEKVFKVFKEQGNpppqkaiQ 117
                 689****************************************9998765559999********************************98888998888 PP

        NifW  93 fVslde 98 
                 fVs+d+
  CCG92368.1 118 FVSIDT 123
                 888876 PP

>> HTH_16  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.1e-05     0.065      18      55 ..      52      81 ..      51      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
      HTH_16 18 iLkhYegyIrklSlrklydedgnvngyvdedlkqelei 55
                iL+++++yI+++Sl         ++ + de++kq    
  CCG92368.1 52 ILQRFHDYIAAASL--------DISSKTDEEIKQSYAE 81
                9*************........4999999999997655 PP

>> DUF5031  Domain of unknown function (DUF5031)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   8.8e-06     0.052      57     143 ..      47     130 ..      25     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.8e-06
     DUF5031  57 vyrLyvfssekGsndtflreeldlvlksssrlklslselrekdyrlLfvatPketPeievikkelnspfatGtefeeveiemikekL 143
                 vyrL++++      d+    +ld + k ++++k s +el  + y  ++++  +++   +v+k+++n p+    +f  ++  + kekL
  CCG92368.1  47 VYRLHILQRF---HDYIAAASLDISSKTDEEIKQSYAELLARAYEDFVHSNAQNEKVFKVFKEQGNPPPQKAIQFVSIDTLVGKEKL 130
                 4555555543...4688889999999*********************************************9999999888877777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1008.20
//
Query:       CCG92369.1  [L=290]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-26   92.8   0.1    5.8e-26   91.3   0.0    1.7  2  SIR2_2    SIR2-like domain


Domain annotation for each model (and alignments):
>> SIR2_2  SIR2-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.13   2.4e+03      62      85 ..      68      91 ..      59      96 .. 0.75
   2 !   91.3   0.0   3.2e-30   5.8e-26       2     141 ..     112     266 ..     111     268 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.13
      SIR2_2 62 ltesdYeellarktpiptllkall 85
                 + s+Y e ++ +++++tll++++
  CCG92369.1 68 WSASQYIENYRHRKTLKTLLSQIF 91
                578899888877777888887776 PP

  == domain 2  score: 91.3 bits;  conditional E-value: 3.2e-30
      SIR2_2   2 liiTTNYDdllekaleesgkpvsd...........aavskedler...elseaesgrtllyklhGslsrpesivltesdYeell...arktpiptllka 83 
                 l++  +YD  +  al+e+++   +            +v+  d+e+      +a  ++t+lyk+ Gs++  +++++++sdY+e+l   + +tpip+l+k+
  CCG92369.1 112 LVVDVWYDASFSVALKEERQSWGQiqgvsqaeypgNWVKAYDWEDrevGMEAAFAWQTVLYKPIGSVKPQKNFIISDSDYVEVLteiDIQTPIPDLIKE 210
                 78999**********76666666667777799999666667777677777999**************944666***********76446********** PP

      SIR2_2  84 llrskslLflGySfsDpnirelleellkesgnarrhyaflpedekeeeekllekknie 141
                 l+++k++LflG++f+ +  r+++++++k+s+    h+a+l ++ +++e+++l ++ni+
  CCG92369.1 211 LRKDKHFLFLGCRFQSQIERTWARQIIKRSSA--VHWAVLTSPLTKNEKRFLVEQNIK 266
                 ********************************..*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.33
# Mc/sec: 2631.91
//
Query:       CCG92370.1  [L=74]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 595.28
//
Query:       CCG92371.1  [L=382]
Description: Pyridoxal phosphate-dependent enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-74  251.6   0.0    1.6e-74  251.4   0.0    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    7.9e-05   22.0   0.0    0.00026   20.3   0.0    1.8  2  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
       0.13   11.9   0.0       0.24   11.1   0.0    1.4  1  HTH_33           Winged helix-turn helix


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.4   0.0   2.6e-78   1.6e-74       3     360 ..      14     368 ..      12     369 .. 0.96

  Alignments for each domain:
  == domain 1  score: 251.4 bits;  conditional E-value: 2.6e-78
                      HHHHHHHHHHHHTSS-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTT CS
  DegT_DnrJ_EryC1   3 keeeleaveevlksgwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdt 96 
                      +++ele + ++l s+ l++g+e+e FE+ fa+y++ k+ ++++s   A +l+L+alg+++g eVI  ++++    ++ l++ ++p +vD+d  +
       CCG92371.1  14 TNQELEVLYRILSSNELSEGSEIELFERSFAQYVNRKFGVSFCSSKVAFLLSLKALGLKKGSEVILSAASWRDLGQVLLWAELTPKYVDIDYWS 107
                      678999999************************************************************************************* PP

                      SSB-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS-SSS-EEEEESTHHH CS
  DegT_DnrJ_EryC1  97 ynidpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnlttGeGGavvtndeel 190
                      + idpa++ +a+ ++tka +  +  G++a+ ++l++ia++  l++ieDa +++G+ y+gk vG++g +++f F +   l tG G +vvt++eel
       CCG92371.1 108 MAIDPAKVVKALSPKTKALIGLNPNGHPANWSELEKIAKENSLYLIEDATESIGSVYQGKVVGSFGILSIFDFSQPSALVTGRGAMVVTDSEEL 201
                      ********************************************************************************************** PP

                      HHHHHHHHBTTCECCTCSSCECCSS---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSSSEEESCEEEEEHC CS
  DegT_DnrJ_EryC1 191 aekarvlrnhGlkrkaekryvgevelGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketkkhawhlyavlvee 284
                      a ++r++r    + +++  +++++ +     +++++AA+glaqL+r+d+++++R+++ + y+++L + eg+  + +++e+++  w+ y+v + +
       CCG92371.1 202 AFHLRMMRERTAE-ERKSVVKSRL-PSLGCSMSNLEAALGLAQLNRIDSILQKRKDVEAFYTQLLGGFEGIKDPYVSPEATEVHWFSYVVHLGT 293
                      ***********99.5777777777.999999************************************************999************ PP

                      CHH.HCHHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHHHH CS
  DegT_DnrJ_EryC1 285 eae.vkrdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVveal 360
                      ++   +rd+++e lk+e+i++ ++   plh  + +a + ++ +g+lp +er+a+r+++Lp y  l+ e+v  +v++l
       CCG92371.1 294 RFSrSSRDAIIEDLKRENIEAFPYC-YPLH-ISSWAMESGVHKGMLPMSERVADRTIALPFYGLLDFEQVACIVKTL 368
                      *99777******************9.6***.677788889999****************************999987 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   4.4e-08   0.00026      48     188 ..      38     156 ..      16     198 .. 0.85
   2 ?   -0.7   0.0       0.1   6.2e+02     263     291 ..     194     222 ..     173     246 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4.4e-08
                    HHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHH CS
  Aminotran_1_2  48 eleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeap 143
                     +e   a++++        r+  v ++s   a +  l++l  l +g+e+++++ ++    ++l ++ ++  ++ ++   ++ +d  ++ +al+   
     CCG92371.1  38 LFERSFAQYVN--------RKFGVSFCSSKVAFLLSLKALG-LKKGSEVILSAASWRDLGQVLLWAELTPKYVDID-YWSMAIDPAKVVKALSP-- 121
                    58888999999........9999******************.***************************9999965.77999***********9.. PP

                    CTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEE CS
  Aminotran_1_2 144 egnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDe 188
                        ktk ++     NP G  a+  elek+   ak++ l+l+ D 
     CCG92371.1 122 ----KTKALIG---LNPNGHPANWSELEKI---AKENSLYLIEDA 156
                    ....9999997...5788************...*******99884 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.1
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 263 alsdallkqseleemrqrlqkrrkelrde 291
                    ++ d+++ + +l  mr+r +++rk+++++
     CCG92371.1 194 VVTDSEELAFHLRMMRERTAEERKSVVKS 222
                    45566666669999999999999998865 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     4e-05      0.24      11      35 ..      44      70 ..      41      74 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4e-05
      HTH_33 11 aqlieerfgvsysvsgvyrlL..krlG 35
                aq++ ++fgvs+ +s v  lL  k lG
  CCG92371.1 44 AQYVNRKFGVSFCSSKVAFLLslKALG 70
                8****************9998555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2673.18
//
Query:       CCG92372.1  [L=69]
Description: Nitrogen fixation protein FixU [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-28   96.7   0.2    5.4e-28   96.6   0.2    1.0  1  NifT      NifT/FixU protein


Domain annotation for each model (and alignments):
>> NifT  NifT/FixU protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.2     3e-32   5.4e-28       1      64 []       1      64 [.       1      64 [. 0.99

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 3e-32
                --EEEEE-SS-E.EEEETTTTEEEEEEEESSSSS-SSEEEETTS-EEE----SSS-SS-EEE-- CS
        NifT  1 MkvmlrkneeGklsvYvpKkDLEekvveeekeekwGgevtLanGweleleelaedtkLPitveA 64
                Mk+mlrk+e+G++++Y++KkDLEe++++++k+e +Gg+vtLanG+++ l+e+++dtkLPit+eA
  CCG92372.1  1 MKIMLRKKEAGEITIYIAKKDLEEPIISSDKKELFGGVVTLANGMKFLLPEMPPDTKLPITLEA 64
                9**************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 459.84
//
Query:       CCG92373.1  [L=133]
Description: putative chaperone involved in Fe-S cluster assembly and activation (HesB-like) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-20   72.6   0.0    3.6e-20   72.2   0.0    1.2  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0     2e-24   3.6e-20       2     110 ..      23     124 ..      22     125 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 2e-24
                  EEEE-HHHHHHHHHHHHCTTEC...EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEE CS
  Fe-S_biosyn   2 kitlteaAaeklkkllaedkke...lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgL 96 
                  +i+lteaA++k+k+l++e++ +   lr+++  gg       Cs g++y++ +  e  ee d+  e +g++++++++s ++l  g ++d++e+l++ ++
   CCG92373.1  23 SIELTEAAVQKIKSLIEEEQDKelkLRIFITGGG-------CS-GYQYNFAFDREI-EEGDILYEMGGVSLVIDPQSHMYL-RGAQIDYEENLEGARF 110
                  699***************7777799999999999.......**.***********9.************************.9*************** PP

                  EEETCCEEEEEEEE CS
  Fe-S_biosyn  97 ksdngilddnvglg 110
                    +n+++ +++++g
   CCG92373.1 111 VIHNPNAGSTCSCG 124
                  *************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1114  (0.062134); expected 358.6 (0.02)
Passed bias filter:                      809  (0.0451224); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 977.36
//
Query:       CCG92374.1  [L=529]
Description: Nif-specific regulatory protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-72  240.3   0.0    1.4e-71  239.6   0.0    1.3  1  Sigma54_activat  Sigma-54 interaction domain
    1.1e-18   67.6   0.0    3.5e-18   66.1   0.0    1.9  1  Sigma54_activ_2  Sigma-54 interaction domain
    1.8e-14   53.2   0.3    5.5e-14   51.7   0.3    1.8  1  HTH_8            Bacterial regulatory protein, Fis family
    1.2e-09   38.3   0.0    3.7e-09   36.7   0.0    1.8  2  AAA_5            AAA domain (dynein-related subfamily)
      2e-08   35.0   0.0    3.3e-08   34.2   0.0    1.4  1  GAF              GAF domain
    6.6e-06   25.6   0.1      0.024   14.0   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    3.9e-05   24.1   0.1     0.0003   21.2   0.0    2.4  3  AAA              ATPase family associated with various cellul
    0.00015   22.2   0.1    0.00041   20.8   0.1    1.7  1  AAA_16           AAA ATPase domain
    0.00056   20.2   0.0      0.005   17.1   0.0    2.2  2  GAF_2            GAF domain
     0.0018   18.4   0.0     0.0039   17.3   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
     0.0025   17.1   0.0      0.004   16.4   0.0    1.2  1  TIP49            TIP49 P-loop domain
      0.005   17.2   0.0      0.011   16.1   0.0    1.5  1  AAA_19           AAA domain
     0.0083   16.2   0.1      0.023   14.8   0.1    1.7  1  HTH_28           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.044   14.1   0.0       0.42   11.0   0.0    2.7  3  GAF_3            GAF domain
      0.089   12.7   0.0       0.21   11.4   0.0    1.6  1  AAA_3            ATPase family associated with various cellul
       0.16   11.5   0.0       0.32   10.5   0.0    1.4  1  AAA_7            P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.6   0.0   1.2e-74   1.4e-71       1     167 [.     195     361 ..     195     362 .. 0.99

  Alignments for each domain:
  == domain 1  score: 239.6 bits;  conditional E-value: 1.2e-74
                      ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTT CS
  Sigma54_activat   1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadg 94 
                      +ig+s++++++l+ + +va+++++vl++GesGtGKe++ar+ih  s+rke+pf++vnc+a+pe+lleseLFGhekGaFtGA  e+kG+fe a+g
       CCG92374.1 195 VIGQSKQMQAVLDLVYHVAPSRSTVLLRGESGTGKEVIARTIHYLSPRKEGPFIKVNCSALPETLLESELFGHEKGAFTGALFERKGRFELAHG 288
                      689******************************************************************************************* PP

                      SEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEE CS
  Sigma54_activat  95 GtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnviei 167
                      GtlfLDeig++++++Q+kLlrvlqe+e+ervG++k+i+vdvr+i+atn++le+av +g+fr+dLy+r+nv++i
       CCG92374.1 289 GTLFLDEIGDISPAVQVKLLRVLQEREFERVGGNKTIRVDVRVITATNKNLEDAVLKGEFRADLYFRINVVSI 361
                      **********************************************************************987 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   3.1e-21   3.5e-18       1     138 []     196     366 ..     196     366 .. 0.89

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 3.1e-21
                      X---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-HHHHHHH.......................TTTS CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklpldlleq.......................akgg 71 
                      +g+s+ +q+  + +  +a s + v+l Ge G+gke++Ar++h  s ++  +f+  ++++lp  lle+                       a+gg
       CCG92374.1 196 IGQSKQMQAVLDLVYHVAPSRSTVLLRGESGTGKEVIARTIHYLSPRKEGPFIKVNCSALPETLLESelfghekgaftgalferkgrfelAHGG 289
                      699**********************************************************666666555555555555555555555558*** PP

                      EEEEEE-TT--HHHHHHHHHHHHH..........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  72 tLylkdiadlskaeqkeLlellak..........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      tL+l +i d+s+a q +Ll +l++            + ++r+++++ k+le  + +g+f + L++++  +++ +PpL
       CCG92374.1 290 TLFLDEIGDISPAVQVKLLRVLQErefervggnkTIRVDVRVITATNKNLEDAVLKGEFRADLYFRINVVSIFLPPL 366
                      *******************************9753399*************************************98 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.3   4.9e-17   5.5e-14       7      42 .]     487     522 ..     487     522 .. 0.98

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 4.9e-17
                 HHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHT CS
       HTH_8   7 kelIeaALertgGnkskAArlLGisRrtLyrKLkkY 42 
                 ke I++A+e++g++++kAArlL+i++r+L++ LkkY
  CCG92374.1 487 KEKIIQAMEKCGWVQAKAARLLNITPRQLGYALKKY 522
                 688********************************9 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   3.3e-12   3.7e-09       2     124 ..     219     339 ..     218     351 .. 0.83
   2 ?   -3.0   0.0         6   6.7e+03      49      75 ..     408     434 ..     393     439 .. 0.70

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 3.3e-12
                 EEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEveraesevlnsLlslleerrl 94 
                 vlL G++GtgK  +a+ +  +   +   +++ + + ++e+ l  ++ +  ++ +++   + r++r    +g +l+lDE+  ++++v+ +Ll++l er++
  CCG92374.1 219 VLLRGESGTGKEVIARTIHYLSprKEGPFIKVNCSALPETLLESEL-FGHEKGAFTGALFERKGRfelaHGGTLFLDEIGDISPAVQVKLLRVLQEREF 316
                 89********************974444554444445555554444.4677789999999999999999****************************** PP

                 E..-SSSEEE---......-EEEEEESS-- CS
       AAA_5  95 lleeggelvkaknddllerfrviatanpld 124
                     g++ ++++       +rvi ++n++ 
  CCG92374.1 317 ERVGGNKTIRVD-------VRVITATNKNL 339
                 *********996.......89999999875 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6
                 ........--------G-SEEEEESGG CS
       AAA_5  49 ngttslvdsplvraaregeilvlDEve 75 
                 +g+ +  +++l raa++++   ++Ev+
  CCG92374.1 408 PGNVRELENCLERAATNSKNNWIEEVD 434
                 555555667888999999999999987 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0     3e-11   3.3e-08       2     131 ..      24     157 ..      23     159 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 3e-11
                 HHHHHHHHHHHHHHHHTESEEEEEEEEETTEEECEEEEECCEEEET.....TSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEE CS
         GAF   2 leelldtvveelrellgadrvalylpdydGlhydipqasrwlfmkn.....grgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPl 95 
                 le+ll++ ++ l+  l++ r ++++++++    +   as  +f+++      ++++ q++++g p+vipd+   + +++ + +      ++ s+ ++P+
  CCG92374.1  24 LEKLLRESLKILSLNLKLLRTVIFIKEAQT---PKILASYGIFDPQehisfYQSFIEQIFKNGFPVVIPDLY-AELYSNEEIKPNECSENPLSLFCIPI 118
                 899********************9954444...244566666666644445666899************964.3333333334455677888******* PP

                 EETTEEEEEEEEEESSS...CSHHHHHHHHHHHHHHHHH CS
         GAF  96 vndgelwGllvlhnpsp...pftreelellqvladqvav 131
                 ++++e++G+lv+ ++++     ++e  ++l   a++ ++
  CCG92374.1 119 RSERECLGVLVCERKREsalDSLSETTQILSLAANLFGQ 157
                 **************8885343377777777777776665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00068      0.76       5      48 ..     195     242 ..     192     251 .. 0.72
   2 !   14.0   0.0   2.1e-05     0.024      96     157 ..     277     336 ..     267     341 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00068
  Mg_chelatase   5 vkGqeeakral.ei...aaaGgHnlllvGppGsGKtmlakrlpsllpp 48 
                   v+Gq+++ +a+ ++    a  +  +ll G +G+GK ++a+ ++ l p+
    CCG92374.1 195 VIGQSKQMQAVlDLvyhVAPSRSTVLLRGESGTGKEVIARTIHYLSPR 242
                   5666665555322211134556789*****************999886 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2.1e-05
  Mg_chelatase  96 kpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamN 157
                     ++G   lah G LfLDE+ +++  v   L + l+++e   +r   + +   ++ +++a+N
    CCG92374.1 277 FERKGRFELAHGGTLFLDEIGDISPAVQVKLLRVLQEREF--ERVGGNKTIRVDVRVITATN 336
                   5689*********************998888777777764..56666666666666666666 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.9   3.3e+03      34      67 ..      16      51 ..       7      53 .. 0.53
   2 !   21.2   0.0   2.6e-07    0.0003       1     120 [.     219     344 ..     219     356 .. 0.77
   3 ?   -1.8   0.0       3.6     4e+03      42      74 ..     410     440 ..     376     445 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.9
                CSSSSTTHHHHHHHHHHHHHHHTS.....TSEEEEEETG CS
         AAA 34 llskyvgesekkirelfkeakeka.....kpsilfiDEi 67
                +l +  ++ ek +re +k +   +       +++fi E+
  CCG92374.1 16 ILASSHSQLEKLLRESLKIL---SlnlklLRTVIFIKEA 51
                33333344444444444443...2334543499999886 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 2.6e-07
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS.....STTHHHHHHH.HHHHHHHHTS...TS.EEEEEETGGGHHHHHTTCCCHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk.....yvgesekkir.elfkeakeka...kp.silfiDEidalaksrsgseseeeervv 86 
                 vll G  GtGK  +a+ +   +   + +f+++++s l +      ++g+ +  +  +lf++    +   ++   lf+DEi  + ++            +
  CCG92374.1 219 VLLRGESGTGKEVIARTIHYLSprkEGPFIKVNCSALPETlleseLFGHEKGAFTgALFERK--GRfelAHgGTLFLDEIGDISPAV-----------Q 304
                 799**************99887554588*******998667778855555555551566653..22446566***********9999...........9 PP

                 HHHHHHHHHTTTS........SSTEEEEEEESSGGGSTHHHH CS
         AAA  87 nqLlteldgvkkk........eskvivigatnrpdkldpall 120
                  +Ll++l++ + +        + +v vi+atn+  +l++a+l
  CCG92374.1 305 VKLLRVLQEREFErvggnktiRVDVRVITATNK--NLEDAVL 344
                 999999999998899999999777********8..4555555 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH CS
         AAA  42 sekkirelfkeakekakpsilfiDEidalaksr 74 
                 + +++++++++a +++  +  +i+E+d  ++++
  CCG92374.1 410 NVRELENCLERAATNS--KNNWIEEVDVACRRN 440
                 5566777777776666..555899999888876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   3.6e-07   0.00041       3      63 ..     196     255 ..     195     318 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.6e-07
      AAA_16   3 vGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdg.giflrgkcdql 63 
                 +G  ++++++l+++  v+ +r + vll+GesG+GK  ++r+++ +l+ ++ g f++ +c  l
  CCG92374.1 196 IGQSKQMQAVLDLVYHVAPSR-STVLLRGESGTGKEVIARTIH-YLSPRKeGPFIKVNCSAL 255
                 68899**********998888.8********************.566664499999999887 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.5e-06     0.005      53     125 ..      70     146 ..      21     159 .. 0.62
   2 ?    0.5   0.0      0.62     7e+02      61     102 ..     420     464 ..     408     467 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.5e-06
                 ---TTHHHHHHHHTS-EEES-.GGG-S-HHHHH..HHHHTT--EEEEEE-TTS---EEEEES......--.HHHHHH CS
       GAF_2  53 plgeglvgealrtgrpvilnd.leedpdkkglp..aghaglrsflavPlisegrvvGvlnlyankppafd.eedlel 125
                 ++ ++ +++++++g pv++ d ++e ++       +  +++ s  ++P++se + +Gvl+  +++++a+d  ++ ++
  CCG92374.1  70 SFYQSFIEQIFKNGFPVVIPDlYAELYSNEEIKpnECSENPLSLFCIPIRSERECLGVLVCERKRESALDsLSETTQ 146
                 34456799*****************5555555533577777777*******99*******98777777743333333 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.62
                 HHHHHTS-EEES-..GGG-S-HHHHHHHHHTT--EEEEEE-T.TS CS
       GAF_2  61 ealrtgrpvilnd..leedpdkkglpaghaglrsflavPlis.eg 102
                 +a+ + +  +++   ++  ++++++p  + +  + ++ P+is  +
  CCG92374.1 420 RAATNSKNNWIEEvdVACRRNQCSSPILWKKDLHVVSTPIISsTE 464
                 6666666666666446669999******************98444 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.5e-06    0.0039       4     119 ..     217     328 ..     215     367 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.5e-06
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---.......----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHH CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselle.......eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregV 95 
                 +++ll g++g+Gk+ +a+++  l   +ke ++i +++s+l e           +   +  + +++g  + + gG ++lDEi  i+p            V
  CCG92374.1 217 STVLLRGESGTGKEVIARTIHYLSP-RKEGPFIKVNCSALPEtlleselFGHEKGAFTGALFERKGRFELAHGGTLFLDEIGDISP-----------AV 303
                 578999**************99999.9************99966654432233445555666677888888888************...........** PP

                 HHHHHHHHH--EE-----.--EE-T CS
       AAA_2  96 qrdLLqileggtltdkqg.rkvdtk 119
                 q  LL++l + + +   g ++++ +
  CCG92374.1 304 QVKLLRVLQEREFERVGGnKTIRVD 328
                 ********99888877775565554 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.5e-06     0.004      12      87 ..     181     254 ..     170     261 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.5e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXX CS
       TIP49  12 GldedgeaekeeeglvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelg..edvpfvalsgse 87 
                  l++d   +++++g++Gq k  +a+   ++l+ +   +  +vLl G+sgtGk  +a +i   l+  ++ pf++++ s 
  CCG92374.1 181 RLKHDSFKTRTANGVIGQSKQMQAV---LDLVYHVAPSRSTVLLRGESGTGKEVIARTIHY-LSprKEGPFIKVNCSA 254
                 5667777788999******998885...5666666666678***************99975.4335788998888875 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   9.4e-06     0.011      23     129 ..     188     315 ..     186     322 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.4e-06
      AAA_19  23 KTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal.......................ldfddlltealelle...... 92 
                 KTr+ ++++   ++++ v ++ ++ va+ +  +    e+ ++ ++ a+TiH+l+                                             
  CCG92374.1 188 KTRTANGVIGQSKQMQAV-LDLVYHVAPSRSTVLLRGESGTGKEVIARTIHYLSPrkegpfikvncsalpetlleselF-------------Ghekgaf 272
                 999999999999999988.799999999987777666777666666*******88999999988888877777665532.............0223333 PP

      AAA_19  93 .....eaeeekklqeeellivDEfqdvd.elqyrLlkallgek 129
                      e++ + +l ++ +l+ DE+ d++  +q++Ll+ l +++
  CCG92374.1 273 tgalfERKGRFELAHGGTLFLDEIGDISpAVQVKLLRVLQERE 315
                 33444778888897888********************998554 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   2.1e-05     0.023       2      36 ..     487     522 ..     487     524 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.1e-05
      HTH_28   2 RleiikllaaGh.svreaArelgisrrtvyrWikry 36 
                 + +ii+++ +++  ++ aAr+l+i++r++   +k+y
  CCG92374.1 487 KEKIIQAMEKCGwVQAKAARLLNITPRQLGYALKKY 522
                 679******99889999************9999988 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00037      0.42      80     122 ..     110     154 ..      23     160 .. 0.68
   2 ?   -2.7   0.0       6.1   6.8e+03       6      64 ..     202     263 ..     198     275 .. 0.49
   3 ?   -1.6   0.0       2.9   3.2e+03      52      70 ..     414     432 ..     395     484 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00037
       GAF_3  80 draalavPLvagrqviGvlalastkpra..fdaedlelleslArq 122
                   ++ ++P++++r+ +Gvl+ ++++++a   ++e+++ l+  A++
  CCG92374.1 110 PLSLFCIPIRSERECLGVLVCERKRESAldSLSETTQILSLAANL 154
                 456799*********************944455777777777765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.1
       GAF_3   6 lekllkllvkllgaevgalllldedgn..kl.qvaagwdgkpalsesld..edsalarralssg 64 
                 ++++l+l+ ++  + ++ +ll+ e g   ++ ++++++  +p+ +  +   ++sal  ++l+s+
  CCG92374.1 202 MQAVLDLVYHVAPS-RSTVLLRGESGTgkEViARTIHY-LSPRKEGPFIkvNCSALPETLLESE 263
                 56666665555554.44555655444311331444555.4444444443345555555555555 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.9
       GAF_3  52 edsalarralssgevvsep 70 
                  +++l r+a +s++ ++e 
  CCG92374.1 414 LENCLERAATNSKNNWIEE 432
                 5577777777777766653 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019      0.21       2     111 ..     219     336 ..     218     346 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
       AAA_3   2 vllegvPGlaktllvkalakald.lefkriqftpdllPsdilGtevfeekekefe....fkkGpv...fanllladeinrappktqsalleameerqvt 92 
                 vll+g  G++k ++++++       e   i++    lP  +l +e+f +++  f+     +kG         l+ dei   +p +q  ll +++er+  
  CCG92374.1 219 VLLRGESGTGKEVIARTIHYLSPrKEGPFIKVNCSALPETLLESELFGHEKGAFTgalfERKGRFelaHGGTLFLDEIGDISPAVQVKLLRVLQEREFE 317
                 789999999999998887655431334456677777888888888888888555422213445431113457899**********************98 PP

       AAA_3  93 vegethklpepflvlatqn 111
                   g ++++     v+++ n
  CCG92374.1 318 RVGGNKTIRVDVRVITATN 336
                 8777777766665554333 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00029      0.32      28      71 ..     211     254 ..     198     260 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00029
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsa 71 
                 ++  ++  vll G++GtGK vi++++    ++++  ++++n+sa
  CCG92374.1 211 HVAPSRSTVLLRGESGTGKEVIARTIHYLSPRKEGPFIKVNCSA 254
                 55678899***************998777777787888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3916.97
//
Query:       CCG92375.1  [L=285]
Description: putative thiosulfate sulfurtransferase sseA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-37  127.4   0.1    6.3e-19   68.5   0.0    2.1  2  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   1.1e-19     2e-15       3     105 ..      15     123 ..      13     125 .. 0.82
   2 !   68.5   0.0   3.5e-23   6.3e-19      12     106 ..     166     277 ..     158     278 .. 0.90

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 1.1e-19
   Rhodanese   3 kelkellekgkvallDvR..ppee....YekghIpgAvnvskdtlsrakkseapllelpeellel....gidnkktvvvycdgggr.aaaaaallkklG 90 
                 ++l+++l++ ++   D+R  +++e    Y++ghIpgAv++  d++++ + +  ++    e+++el    gi++++t+++y+d+++  a+ a ++++  G
  CCG92375.1  15 EWLAQNLNSLAP---DIRiiESNEdvllYDTGHIPGAVHI--DWRKDLQDPIIRDYISAEKFAELcsrnGITPNTTCIFYGDKSNWwACYALWAFELFG 108
                 8999***99865...6666533334669************..77777777777777777777777777******************88888889999** PP

   Rhodanese  91 yknvsvldGGfkawk 105
                 +kn ++l+GG ++w 
  CCG92375.1 109 HKNSKILNGGRDKWI 123
                 888***********6 PP

  == domain 2  score: 68.5 bits;  conditional E-value: 3.5e-23
   Rhodanese  12 gkvallDvRppeeY................ekghIpgAvnvskdtlsrakkseapllelpeellel.gidnkktvvvycdgggraaaaaallkk.lGyk 92 
                 +++ l+DvR+p eY                  ghIpgA +v+++t+ +++ + ++ +el + ++++ g+d++k+ vvyc+ g+r++ ++  lk+ lG+k
  CCG92375.1 166 KGP-LIDVRSPGEYsgellhmpeypqegvlRGGHIPGAKSVPWKTAVKEDGTFKSIAELRDIYEKQaGLDPEKETVVYCRIGERSSHTWFVLKYlLGHK 263
                 333.*********99999999999999996779********9999999999999999999999999999***************9999*****99**88 PP

   Rhodanese  93 nvsvldGGfkawke 106
                 nv+++dG++++w +
  CCG92375.1 264 NVKNYDGSWTEWGN 277
                 8***********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2179.66
//
Query:       CCG92376.1  [L=197]
Description: NifQ family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-43  146.6   1.4    2.3e-42  145.1   0.1    1.9  2  NifQ      NifQ


Domain annotation for each model (and alignments):
>> NifQ  NifQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2     0.042   7.5e+02     127     139 ..       5      17 ..       3      25 .. 0.85
   2 !  145.1   0.1   1.3e-46   2.3e-42      16     160 .]      54     195 ..      41     195 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.042
        NifQ 127 WKkFlyrqlcere 139
                 WKkF+    c ++
  CCG92376.1   5 WKKFMTMDTCLQN 17 
                 *****99999765 PP

  == domain 2  score: 145.1 bits;  conditional E-value: 1.3e-46
        NifQ  16 laealGlsaaelaeLlerlfpgaeaaleaaalaeeleeeraeeeedlralLlehaseeaeeerwlaaivarrsleedhLWqdLgLasraeLsallerhF 114
                 + + lGls++el++++  +  ++     + + +  +  e  ee ++l++l+l++++   e + w+a+++a++sl+++hLWqdLgL+sr+eL ++le  F
  CCG92376.1  54 FIPGLGLSKEELSKMAVFFEMSLI---CSRDGNLGTYLELYEEHKMLVQLFLRYRNYFGELSLWIAHLLATASLGDNHLWQDLGLESRKELGTILEAFF 149
                 667889999999998755444333...3445555566678999******************************************************** PP

        NifQ 115 peLaarNtknmkWKkFlyrqlcereglvvckaPsCeeCedyaaCFg 160
                  +L ++N+++m+WKkF+yr+lce+eg++vckaP+C++C+d   C+g
  CCG92376.1 150 LPLYSSNREDMRWKKFFYRKLCEEEGIFVCKAPNCKDCTDRPLCYG 195
                 *********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1338.97
//
Query:       CCG92377.1  [L=388]
Description: Cysteine desulfurase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-83  281.3   0.0    1.6e-83  280.7   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
      3e-10   39.8   0.0      1e-09   38.0   0.0    1.8  1  Aminotran_1_2    Aminotransferase class I and II
    9.3e-06   25.1   0.0    1.2e-05   24.8   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.012   14.2   0.0      0.045   12.3   0.0    1.8  2  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
      0.026   13.8   0.0      0.048   13.0   0.0    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.7   0.0   4.4e-87   1.6e-83       1     371 []      10     370 ..      10     370 .. 0.95

  Alignments for each domain:
  == domain 1  score: 280.7 bits;  conditional E-value: 4.4e-87
                  EEEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSH CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaeh 98 
                  +yld++Att++ +eV +a+   +++  +n+ +s h+ gkea++a+ ++r+k+a+++++++ eeiiftsG+te+i l++++++ +  ++++iv++++eh
   CCG92377.1  10 VYLDYNATTPLVEEVYEAMLPWLREKFGNP-SSSHREGKEAKEALFDCRKKIAQFLGTRT-EEIIFTSGCTESIGLALRGALLAAAHKNKIVISAVEH 105
                  7*****************************.99**************************7.************************************* PP

                  GGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEE CS
  Aminotran_5  99 hanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDfla 196
                   a +  ++ l+ ++g++ +++p++++g+l+l++lek l+  + ++++ +++n+tG+++p+e+i ++ak+kg+l++vD+aq vg+i+i +++lgvD+++
   CCG92377.1 106 PAVFSLMKLLE-KEGVQFTILPVERDGSLNLEQLEKSLDSSVGILSLLWANNETGVLFPIEQISRIAKAKGILFHVDGAQVVGKIKIHLAELGVDLFS 202
                  ****7777776.88************************************************************************************ PP

                  EETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCT. CS
  Aminotran_5 197 fsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlks. 293
                  fs+hK +gP+GiG lyvrk   ++l pl +g +        e+         ++GT+nvagi+g+++a e+  e ++ +   + ++l++++++++++ 
   CCG92377.1 203 FSAHKCYGPKGIGGLYVRK--GVSLAPLIPGHQ--------ERN-------RRGGTENVAGIVGMAKACELA-ESKIMRESGRIQKLRDWMEQKIEQe 282
                  *******************..999988877766........555.......789*****************9.4455556788999*********877 PP

                  STTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTT....HHHHHHTT.S.......-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 294 lpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhca....qplmkrlale.......gtvRaSlyiynteeevdrl 371
                  lpg+ ++  +++ r  ++ ++ f g ++e++ ++Ld++gIav++G++c     +p++++la+        +++R+Sl++ +t+ee++ +
   CCG92377.1 283 LPGIVIVA-KNKSRIWNTSNIIFSGTDSEELLNYLDQKGIAVSTGSACMsgsqEPSHVLLAMGfdrkeasSALRISLGFETTQEEIEIF 370
                  ****9966.7999*************************************************************************975 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   2.9e-13     1e-09      48     194 ..      55     188 ..      11     374 .. 0.69

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 2.9e-13
                    HHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHH..HHHHTTT-EEEEEESS-THHHHHHHHTTSE.EEEEEBEETTTTEE-HHHHHHHHT CS
  Aminotran_1_2  48 eleealakflgrseklklkreaavvvgsGagaliealif..llklnpgdeilvpdptyasyknilrlsgge.vvryplyseedfhldlealeealk 140
                    + ++++a+flg      + +e +++++sG+++ i ++ +  ll + ++ +i++++  ++ +    +l   e v+   l  e d +l+le+le+ l+
     CCG92377.1  55 DCRKKIAQFLG------TRTE-EIIFTSGCTESIGLALRgaLLAAAHKNKIVISAVEHPAVFSLMKLLEKEgVQFTILPVERDGSLNLEQLEKSLD 143
                    6799*******......5555.************9998633445899**************999999988844444445569************** PP

                    THHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCB CS
  Aminotran_1_2 141 eapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfv 194
                    +       + ++ +  ++N tG++++ e++  +   ak++++l  vD a  ++ 
     CCG92377.1 144 S------SVGILSLLWANNETGVLFPIEQISRI---AKAKGILFHVDGAQVVGK 188
                    *......889***********************...999999999997755555 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.3e-09   1.2e-05      70     200 ..      94     209 ..      14     298 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 3.3e-09
                      TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-E CS
  Beta_elim_lyase  70 rgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygip 163
                       +++++++   h        + e +gv+++ l+ +++G ++le+le+ ++        ++++sl  +nn   G   ++e   +++ iak++gi 
       CCG92377.1  94 HKNKIVISAVEHPAVFSLMKLLEKEGVQFTILPVERDGSLNLEQLEKSLDS------SVGILSLLWANNE-TGVLFPIE---QISRIAKAKGIL 177
                      4444555555666666666667779999**********************9......589*********6.88888866...667899****** PP

                      EEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT CS
  Beta_elim_lyase 164 lhlDgARfanaakslgeivkemfsyvDsvtmslkKdl 200
                      +h+DgA ++    +++ +++e+  +vD +++s+ K  
       CCG92377.1 178 FHVDGAQVVG---KIKIHLAEL--GVDLFSFSAHKCY 209
                      ******9875...567777776..6899999988854 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.2e-05     0.045      70     198 ..      70     207 ..      49     225 .. 0.74
   2 ?   -1.0   0.0      0.14   4.9e+02     359     381 ..     352     374 ..     338     375 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.2e-05
                      EEEESSHHH.HHHHHHHTTS-TTEE..EEEESTSSHHHHHHHHHTHHHTTCEEEEEST.....TSHHHHHHHCCTTEEEEEEESS-TTTT---- CS
  Cys_Met_Meta_PP  70 alavssGma.AiaaailallkaGde..ivvsddlYggtqrllkkvlkklgievkfvdt.....sdleelekaikentklvylEtptnpllkvvD 155
                       ++++sG + +i +a++  l a  +   +v + +  ++   l k+l+k g+++++  +      +le+lek +++ + ++ l    n +  +  
       CCG92377.1  70 EIIFTSGCTeSIGLALRGALLAAAHknKIVISAVEHPAVFSLMKLLEKEGVQFTILPVerdgsLNLEQLEKSLDSSVGILSLLWANNETGVLFP 163
                      5566666552334444443333322235555566666666667788888888888766445556899************9999999******** PP

                      HHHHHHHHHHTT-EEEEEGTTTHT.TTS-GGGGT-SEEEEETTT CS
  Cys_Met_Meta_PP 156 iekiaklakkagvlvvvDntfasp.llqrplklgaDivvhSaTK 198
                      ie+i+++ak++g+l  vD + + + + ++  +lg+D+   Sa K
       CCG92377.1 164 IEQISRIAKAKGILFHVDGAQVVGkIKIHLAELGVDLFSFSAHK 207
                      ********************999966677779****99999988 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.14
                      TEEEEE--SS-HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 359 dliRlsvGiEdvdDliaDlkqal 381
                      + +R+s G+E +++ i+ + qal
       CCG92377.1 352 SALRISLGFETTQEEIEIFLQAL 374
                      679*********99998888887 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.3e-05     0.048      30     182 ..      58     217 ..      45     236 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
                      HHHHHHHT..-SEEEEESSHHHHHHHHHHH..TTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-T..TTSSB-GGGCGGG--TTE...EE CS
  DegT_DnrJ_EryC1  30 kafaaylg..vkhaiavssGtaAlhlaLra..lgvgpgdeVIvpsltFvatanavlelgakpvfvDvdp..dtynidpaaieaaitert...ka 114
                      k++a++lg  ++  i +s +t+++ laLr   l + +++++++ ++   a  +    l  + v   + p   +  ++ +++e+ + +     + 
       CCG92377.1  58 KKIAQFLGtrTEEIIFTSGCTESIGLALRGalLAAAHKNKIVISAVEHPAVFSLMKLLEKEGVQFTILPveRDGSLNLEQLEKSLDSSVgilSL 151
                      6899999976788999*************87888899****************9999999999888876226899**********999877444 PP

                      EEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS.-SSS-EE CS
  DegT_DnrJ_EryC1 115 IlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnl.ttGeGGa 182
                        + +  G  + ++++ +ia+++g+ +  D A+ +G      ++ +lg +  fSF + K     G GG+
       CCG92377.1 152 LWANNETGVLFPIEQISRIAKAKGILFHVDGAQVVGKIKI--HLAELG-VDLFSFSAHKCYgPKGIGGL 217
                      45556799**************************996543..366666.77788888777666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2714.60
//
Query:       CCG92378.1  [L=93]
Description: NifZ domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-32  109.1   0.3    7.9e-32  108.9   0.3    1.1  1  NifZ      NifZ domain


Domain annotation for each model (and alignments):
>> NifZ  NifZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.3   4.4e-36   7.9e-32       2      72 ..      13      83 ..      12      84 .. 0.98

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 4.4e-36
        NifZ  2 pkfevgdkVraakdirNDGtfpgkeigelLvkkGdvGvvvsvGtflqnqeiYlVeFleeglvVGcleeELe 72
                p fe+g+kVr +k+irNDGtfpgkeige+LvkkG++G+v s+Gtflq+++iY V+F+e+g++VG+++eELe
  CCG92378.1 13 PVFEFGQKVRSRKNIRNDGTFPGKEIGEILVKKGEIGYVSSIGTFLQKYYIYGVDFIERGYLVGMKAEELE 83
                89********************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 722.06
//
Query:       CCG92379.1  [L=273]
Description: FeS4 cluster protein and leucine rich repeats [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-26   91.0   1.5    6.2e-26   90.2   1.5    1.5  1  LRV_FeS    LRV protein FeS4 cluster
    3.4e-13   48.6   0.2        1.8    9.0   0.0    7.8  8  HEAT       HEAT repeat
    4.5e-11   42.4   0.0       0.78   10.3   0.0    6.8  7  LRV        Leucine rich repeat variant
    6.8e-06   26.4   0.7       0.14   12.5   0.2    4.8  3  HEAT_2     HEAT repeats
  ------ inclusion threshold ------
      0.054   14.0   0.3         24    5.6   0.0    3.9  4  HEAT_EZ    HEAT-like repeat
        0.3   11.2   1.1       0.67   10.1   1.1    1.6  1  zf_CCCH_4  Zinc finger domain
       0.35   11.2   2.8       0.63   10.4   2.8    1.4  1  Opy2       Opy2 protein


Domain annotation for each model (and alignments):
>> LRV_FeS  LRV protein FeS4 cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   1.5   2.4e-29   6.2e-26       1      52 [.       8      59 ..       8      60 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 2.4e-29
     LRV_FeS  1 aldWqGeevdCasCehrellaeGrCelgkaCvadryarridRFfrwnpeLAd 52
                +ldW+G++vdC++C+h+el+++G+C+ g+aC++drya+ri+RFf++np+LA 
  CCG92379.1  8 CLDWEGKPVDCTQCPHKELKSKGKCKKGEACIQDRYAKRIERFFERNPTLAT 59
                69*************************************************7 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.59   1.5e+03       7      22 ..      59      75 ..      55      77 .. 0.75
   2 !    8.1   0.0    0.0014       3.5       7      22 ..      84      99 ..      83     102 .. 0.88
   3 ?    2.3   0.0       0.1   2.6e+02       5      24 ..     106     125 ..     104     128 .. 0.80
   4 !    6.2   0.0    0.0059        15       5      22 ..     130     147 ..     129     150 .. 0.87
   5 ?    4.5   0.0     0.021        53       8      25 ..     157     174 ..     154     175 .. 0.84
   6 ?    1.9   0.0      0.14   3.5e+02       9      22 ..     182     195 ..     178     198 .. 0.81
   7 !    9.0   0.0    0.0007       1.8       5      21 ..     202     218 ..     200     221 .. 0.82
   8 ?    4.4   0.0     0.022        56       6      20 ..     227     241 ..     224     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.59
                HH.HT-SSHHHHHHHHH CS
        HEAT  7 kl.lsDpspeVReaAak 22
                +  l++p  e+R+ A++
  CCG92379.1 59 TSyLMHPYFEIRAIALR 75
                443899******99986 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0014
                HHHT-SSHHHHHHHHH CS
        HEAT  7 kllsDpspeVReaAak 22
                ++ +Dp+  VR++Aa+
  CCG92379.1 84 RMSMDPDDTVRMSAAY 99
                6889**********97 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.1
                 HHHHHT-SSHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaL 24 
                 ll+l  D+s +VR  Aa  L
  CCG92379.1 106 LLRLRFDKSRDVRIRAAGLL 125
                 667668********999776 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0059
                 HHHHHT-SSHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAak 22 
                 l+ +l Dp+  VR+ +a+
  CCG92379.1 130 LVPMLIDPDYYVRQIVAR 147
                 5789**********9987 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.021
                 HHT-SSHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLg 25 
                 + sDp++ VR  +ak +g
  CCG92379.1 157 MVSDPEAAVRIEVAKRIG 174
                 789*******99999877 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.14
                 HT-SSHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAak 22 
                  +D + eVR +++ 
  CCG92379.1 182 ANDLNEEVRLTVVS 195
                 4999******9986 PP

  == domain 7  score: 9.0 bits;  conditional E-value: 0.0007
                 HHHHHT-SSHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAa 21 
                 l++ ++Dps++VR  ++
  CCG92379.1 202 LIRFINDPSWKVRFEVV 218
                 67788********8766 PP

  == domain 8  score: 4.4 bits;  conditional E-value: 0.022
                 HHHHT-SSHHHHHHH CS
        HEAT   6 lkllsDpspeVReaA 20 
                 +  ++D++++VRe A
  CCG92379.1 227 QIFCQDQDSFVREFA 241
                 5569********987 PP

>> LRV  Leucine rich repeat variant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.2      0.16   4.2e+02       2      25 ..      68      89 ..      67      90 .. 0.65
   2 ?    1.3   0.0      0.21   5.4e+02       2      24 ..      92     112 ..      91     114 .. 0.89
   3 ?   -1.3   0.3       1.5   3.9e+03       1      26 []     115     138 ..     115     138 .. 0.72
   4 ?    4.7   0.0     0.019        48       3      18 ..     141     154 ..     139     162 .. 0.78
   5 ?    4.6   0.0     0.019        50       2      24 ..     164     184 ..     163     185 .. 0.90
   6 !   10.3   0.0   0.00031      0.78       2      25 ..     188     209 ..     187     210 .. 0.90
   7 !    9.8   0.0   0.00041       1.1       1      26 []     211     234 ..     211     234 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.16
         LRV  2 eVRaaVArrPdlPpeaLerLahDP 25
                e+Ra++ r+   ++ +  r++ DP
  CCG92379.1 68 EIRAIALRH--VDGHHQIRMSMDP 89
                789999999..5555544555555 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.21
         LRV   2 eVRaaVArrPdlPpeaLerLahD 24 
                 +VR  +A++   P   L+rL  D
  CCG92379.1  92 TVRMSAAYY--VPKKFLLRLRFD 112
                 79999****..**999**99877 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.5
         LRV   1 reVRaaVArrPdlPpeaLerLahDPd 26 
                 r+VR  +A    l +  L+ ++ DPd
  CCG92379.1 115 RDVRIRAAGL--LEGMDLVPMLIDPD 138
                 5778777777..77777888888887 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.019
         LRV   3 VRaaVArrPdlPpeaL 18 
                 VR +VAr    P+e L
  CCG92379.1 141 VRQIVARK--IPVEWL 154
                 9*******..999966 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.019
         LRV   2 eVRaaVArrPdlPpeaLerLahD 24 
                 +VR  VA r     e L  La D
  CCG92379.1 164 AVRIEVAKR--IGEEGLNILAND 184
                 7********..999999999988 PP

  == domain 6  score: 10.3 bits;  conditional E-value: 0.00031
         LRV   2 eVRaaVArrPdlPpeaLerLahDP 25 
                 eVR++V++r  l++  L r   DP
  CCG92379.1 188 EVRLTVVSR--LDSNELIRFINDP 209
                 8********..*999999999998 PP

  == domain 7  score: 9.8 bits;  conditional E-value: 0.00041
         LRV   1 reVRaaVArrPdlPpeaLerLahDPd 26 
                 + VR  V+rr   +p+ L   ++D d
  CCG92379.1 211 WKVRFEVVRR--IHPGSLQIFCQDQD 234
                 89********..******99999987 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.66   1.7e+03      73      84 ..      87      98 ..      82     101 .. 0.54
   2 !   12.5   0.2   5.5e-05      0.14       5      60 ..     106     178 ..     102     191 .. 0.74
   3 !    7.8   0.0    0.0017       4.4      34      53 ..     200     219 ..     175     243 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.66
      HEAT_2 73 dddddvvReaAa 84
                 d+dd vR +Aa
  CCG92379.1 87 MDPDDTVRMSAA 98
                455555555443 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.5e-05
      HEAT_2   5 lqalendpdpevrraairaLg................rignpea......lpaLvellededpavRraaaeaLgaigd 60 
                 l +l+ d++ +vr++a+  L                 +     +      +++L+ +++d+++avR ++a+ +g+ g+
  CCG92379.1 106 LLRLRFDKSRDVRIRAAGLLEgmdlvpmlidpdyyvrQ-----IvarkipVEWLIFMVSDPEAAVRIEVAKRIGEEGL 178
                 44576799999999999999977777753333333322.....1444447*********************9998775 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0017
      HEAT_2  34 paLvellededpavRraaae 53 
                 + L+++++d+++ vR ++++
  CCG92379.1 200 NELIRFINDPSWKVRFEVVR 219
                 34566666666666666554 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0093        24      35      49 ..      84      98 ..      83      99 .. 0.88
   2 ?    2.2   0.0      0.11   2.8e+02      34      53 ..     106     126 ..     101     126 .. 0.70
   3 ?    0.7   0.0      0.32   8.3e+02      29      50 ..     130     147 ..     129     147 .. 0.80
   4 ?   -2.1   0.0       2.4   6.1e+03      33      45 ..     154     166 ..     154     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0093
     HEAT_EZ 35 alLnddsdeVRaaAa 49
                ++ +d++d+VR  Aa
  CCG92379.1 84 RMSMDPDDTVRMSAA 98
                689**********98 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.11
     HEAT_EZ  34 lalL.nddsdeVRaaAagaLg 53 
                 l +L  d+s +VR  Aag L+
  CCG92379.1 106 LLRLrFDKSRDVRIRAAGLLE 126
                 4456245555********995 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.32
     HEAT_EZ  29 ilpaLlalLnddsd.eVRaaAag 50 
                 ++p L+     d+d  VR+ +a+
  CCG92379.1 130 LVPMLI-----DPDyYVRQIVAR 147
                 788888.....888899999875 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 2.4
     HEAT_EZ  33 LlalLnddsdeVR 45 
                 L+ + +d++++VR
  CCG92379.1 154 LIFMVSDPEAAVR 166
                 6788899999999 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.1   0.00026      0.67       6      15 ..      29      38 ..      28      39 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00026
   zf_CCCH_4  6 qGtCkkGdkC 15
                +G+CkkG++C
  CCG92379.1 29 KGKCKKGEAC 38
                7********* PP

>> Opy2  Opy2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.8   0.00024      0.63       1      22 [.      18      40 ..      18      42 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00024
        Opy2  1 CVsCpdsapsCP.sCpsgeeCvl 22
                C +Cp ++++ + +C++ge C++
  CCG92379.1 18 CTQCPHKELKSKgKCKKGEACIQ 40
                99****9999999********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2078.61
//
Query:       CCG92380.1  [L=171]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.049   14.0   0.0       0.08   13.3   0.0    1.4  1  Radical_SAM  Radical SAM superfamily
      0.056   13.4   0.2      0.097   12.6   0.2    1.4  1  Pyr_excise   Pyrimidine dimer DNA glycosylase


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     9e-06      0.08      31     144 ..      23     154 ..      13     169 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9e-06
                  HHHHHHHHHHHH.HHTTSEEEEEE........SSTGGGSTTHHHHHHHHHHTC...........CCTEEEEEEECSSCHG.........HHHHHHHHH CS
                  xxxxxxxxxxxx.xxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxx.........xxxxxxxxx RF
  Radical_SAM  31 veeileevkelk.aekgvkevilg........ggepllypdfvellerlakla...........vpgiritvetngtlpd.........eeklerlle 99 
                  vee ++e+ke++ a+++++ v+++        g + ++   f+++++  +              +   ++         +         ee++e l+ 
   CCG92380.1  23 VEEAARELKEAArAYPNKEKVLFHlykafekaGKHITVLIGFYRFYFYQSDMLqsiywgrlcmeETAKKL---------RinenwmeltEEQIEMLKS 111
                  6777777777776666677777777788888877777777777777777776677555555533233333.........3333333455********* PP

                  TT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 100 lgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikr 144
                  +    v l l a++   v  l++r +++ee l+ l++l++ ++k+
   CCG92380.1 112 ADNPLVDLYLRAFHA--VAYLLGRVGNIEESLKMLQLLTRIDVKS 154
                  ***************..899999****************999885 PP

>> Pyr_excise  Pyrimidine dimer DNA glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   1.1e-05     0.097      35      98 ..      49     113 ..      27     128 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
                 GGGS---SS--SSTTTTGGGTTBHHHHHH.HHHHHHHHHHHTT---S--S----TTS-GGGB--- CS
  Pyr_excise  35 rgngkipkhftlgtGHvtfFynkleyLrk.rylllieEmlkRgynvneeekddisevekeyrgdw 98 
                 +  +k  kh+t+  G  +f++++ + L+  +   l+ E ++   ++ne++++  +e ++ +    
  CCG92380.1  49 KAFEKAGKHITVLIGFYRFYFYQSDMLQSiYWGRLCMEETAKKLRINENWMELTEEQIEMLKSAD 113
                 55678889*******************9735567888888889*******996666656665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1441.15
//
Query:       CCG92381.1  [L=113]
Description: Fe-S cluster assembly scaffold protein SufA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-08   33.6   0.0    4.3e-08   33.3   0.0    1.1  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis
  ------ inclusion threshold ------
       0.16   12.0   0.0        0.2   11.7   0.0    1.1  1  Phage_Gp17   Gene Product 17


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   4.8e-12   4.3e-08       1     109 [.       1     103 [.       1     105 [. 0.84

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 4.8e-12
                  -EEEE-HHHHHHHHHHHHCTTEC....EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEE CS
  Fe-S_biosyn   1 mkitlteaAaeklkkllaedkke....lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtl 94 
                  mki +t++A++ ++++++  +++    +rL v  gg       Cs g+  ++ +v+e+  + + ++  +g+++++ ++ l+++ e+  + f e+ ++ 
   CCG92381.1   1 MKISITPKAKQFISRMIRMCGGTksagMRLIVGEGG-------CS-GFTTDFSVVEEP--QQSDTIWEDGVRLFIPKECLPYF-EEAIVHFIETPTET 87 
                  9****************9966666899*********.......**.**********99..555567789**************.88999999888888 PP

                  EEEEETC.CEEEEEEE CS
  Fe-S_biosyn  95 gLksdng.ilddnvgl 109
                  +L   +g   ++++g+
   CCG92381.1  88 RLIVLSGrKNNNSCGC 103
                  8876665244556776 PP

>> Phage_Gp17  Gene Product 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.3e-05       0.2      89     120 ..      51      82 ..      42      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.3e-05
  Phage_Gp17  89 drvdyidkdgirfdvpretsphvdksivtfnd 120
                 ++ d i  dg+r+ +p+e  p+ + +iv f +
  CCG92381.1  51 QQSDTIWEDGVRLFIPKECLPYFEEAIVHFIE 82 
                 5779999*********************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 891.17
//
Query:       CCG92382.1  [L=74]
Description: Ferredoxin-like protein in nif region [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-10   40.3  17.3    5.1e-07   29.2   3.5    3.4  3  Fer4         4Fe-4S binding domain
    2.3e-09   37.7  23.7    3.1e-07   30.9  11.5    1.9  2  Fer4_7       4Fe-4S dicluster domain
    3.2e-07   30.1  12.7    0.00027   20.8   1.6    2.5  2  Fer4_2       4Fe-4S binding domain
      1e-06   28.7  23.4    1.1e-05   25.4  12.7    1.6  2  Fer4_10      4Fe-4S dicluster domain
      2e-06   27.8  10.5    2.2e-06   27.7   9.5    1.6  1  Fer4_9       4Fe-4S dicluster domain
      6e-06   26.1   7.9    6.6e-06   26.0   7.9    1.1  1  GF_recep_IV  Growth factor receptor domain IV
    1.2e-05   25.1  18.1     0.0029   17.6   3.5    2.8  2  Fer4_6       4Fe-4S binding domain
    1.9e-05   25.2  16.8      0.027   15.4   6.4    2.5  2  Fer4_3       4Fe-4S binding domain
     0.0042   17.6   4.4     0.0042   17.6   4.4    2.5  3  Fer4_17      4Fe-4S dicluster domain
     0.0053   17.2  19.6       0.26   11.9   3.3    3.2  2  Fer4_4       4Fe-4S binding domain
     0.0068   16.5  18.9      0.013   15.6   3.5    2.7  2  Fer4_21      4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.012   16.5  16.4      0.023   15.6   7.9    2.4  2  Fer4_16      4Fe-4S double cluster binding domain
      0.071   13.6   4.2      0.071   13.6   4.2    2.4  2  Fer4_8       4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   3.5   3.7e-10   5.1e-07       2      24 .]       4      26 ..       3      26 .. 0.92
   2 !   10.0   0.3   0.00045      0.62       3      11 ..      34      42 ..      32      42 .. 0.91
   3 !   10.1   1.1   0.00041      0.57      13      21 ..      50      58 ..      50      59 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 3.7e-10
                EEETTTSSS-THHHHHSTTTEEE CS
        Fer4  2 videekCigCGaCvevCPvgAIt 24
                +i  + C+gC aC+  CP+gAI+
  CCG92382.1  4 KIVASQCTGCSACEPECPNGAIY 26
                78899*****************6 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00045
                EETTTSSS- CS
        Fer4  3 ideekCigC 11
                id+ekC+ C
  CCG92382.1 34 IDPEKCTEC 42
                9******** PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00041
                HHHHHSTTT CS
        Fer4 13 aCvevCPvg 21
                +Cv+vCPv+
  CCG92382.1 50 QCVSVCPVD 58
                6******98 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   4.2   2.1e-06    0.0029      31      52 .]       3      24 ..       1      24 [. 0.88
   2 !   30.9  11.5   2.2e-10   3.1e-07       1      51 [.       9      58 ..       9      59 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.1e-06
      Fer4_7 31 veidpekClgCgaCvavCPtga 52
                ++i++++C+gC aC+ +CP ga
  CCG92382.1  3 YKIVASQCTGCSACEPECPNGA 24
                5788999************997 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 2.2e-10
      Fer4_7  1 rCigCgaCvaaCpvkaieldeeenekgtekveidpekClgC......gaCvavCPtg 51
                +C+gC aC++ Cp++ai+ +e          +idpekC+ C       +Cv+vCP++
  CCG92382.1  9 QCTGCSACEPECPNGAIYEKE-------GIFAIDPEKCTECigffdePQCVSVCPVD 58
                6*****************866.......489**********87776568******97 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   3.8   2.7e-05     0.037       4      22 .]       4      22 ..       2      22 .. 0.86
   2 !   20.8   1.6     2e-07   0.00027       3      21 ..      32      56 ..      30      57 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.7e-05
      Fer4_2  4 vvdtdrCigCgaCvsaCPa 22
                ++++  C+gC+aC   CP+
  CCG92382.1  4 KIVASQCTGCSACEPECPN 22
                677788************5 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 2e-07
      Fer4_2  3 vvvdtdrCigC.g.....aCvsaCP 21
                +++d+++C++C g      Cvs+CP
  CCG92382.1 32 FAIDPEKCTECiGffdepQCVSVCP 56
                789*********677778******* PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4  12.7   8.3e-09   1.1e-05       3      56 .]       4      56 ..       2      56 .. 0.74
   2 !   14.5   2.9     2e-05     0.028       4      24 ..      34      60 ..      31      72 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 8.3e-09
     Fer4_10  3 vidddtCirCgkCvkaCPadltsvgakgeaseeeavrkkvekCtgc...g...aCveaCP 56
                +i +++C++C +C   CP      ga++e++++ a+  ++ekCt+c   +   +Cv++CP
  CCG92382.1  4 KIVASQCTGCSACEPECPN-----GAIYEKEGIFAI--DPEKCTECigfFdepQCVSVCP 56
                577899*************.....555555555555..557777774433677******9 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2e-05
     Fer4_10  4 idddtCirCg......kCvkaCPadlt 24
                id+++C++C       +Cv++CP+d+t
  CCG92382.1 34 IDPEKCTECIgffdepQCVSVCPVDNT 60
                899999999888888899999999664 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   9.5   1.6e-09   2.2e-06       1      49 [.       9      58 ..       9      60 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.6e-09
      Fer4_9  1 kCtgCgaCveaCpagvvvedaaerkarlraaseeaCigCga......CveaCpkg 49
                +CtgC aC++ Cp+g++ e+++   +  +     +C++C        Cv +Cp +
  CCG92382.1  9 QCTGCSACEPECPNGAIYEKEGIFAIDPE-----KCTECIGffdepqCVSVCPVD 58
                6****************999988888864.....6****99999*********86 PP

>> GF_recep_IV  Growth factor receptor domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   7.9   4.8e-09   6.6e-06      49      95 ..      11      59 ..       2      73 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 4.8e-09
  GF_recep_IV 49 kkCvkChpeCek..lnesetCsgpgadeClkCahfkdgseCvseCPegv 95
                 + C +C+peC +  + e+e   + ++++C++C  f d+++Cvs CP + 
   CCG92382.1 11 TGCSACEPECPNgaIYEKEGIFAIDPEKCTECIGFFDEPQCVSVCPVDN 59
                 579*******65225678999*************************874 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   3.5   2.1e-06    0.0029       6      24 .]       7      25 ..       4      25 .. 0.90
   2 !   12.6   6.6   8.3e-05      0.11       2      21 ..      32      57 ..      31      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.1e-06
      Fer4_6  6 pdkCigCgdCvrvCPegai 24
                ++ C+gC +C+  CP gai
  CCG92382.1  7 ASQCTGCSACEPECPNGAI 25
                689*************998 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 8.3e-05
      Fer4_6  2 veidpdkCigC.gd.....CvrvCPe 21
                 +idp+kC+ C g      Cv+vCP 
  CCG92382.1 32 FAIDPEKCTECiGFfdepqCVSVCPV 57
                68***********************7 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   6.4     2e-05     0.027       1      15 []      10      24 ..      10      24 .. 0.98
   2 !   15.3   2.6   2.1e-05     0.029       1      14 [.      39      58 ..      39      59 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2e-05
      Fer4_3  1 CtgCgaCvevCPvgA 15
                CtgC+aC+  CP+gA
  CCG92382.1 10 CTGCSACEPECPNGA 24
                **************9 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.1e-05
      Fer4_3  1 CtgC.g.....aCvevCPvg 14
                Ct C g     +Cv vCPv+
  CCG92382.1 39 CTECiGffdepQCVSVCPVD 58
                99**7689999*******96 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   4.4   3.1e-06    0.0042      42      59 ..       6      23 ..       1      25 [. 0.87
   2 ?    6.1  14.5     0.012        17       1      20 [.       9      28 ..       9      60 .. 0.82
   3 ?    2.5   3.8      0.16   2.2e+02       2      18 ..      39      61 ..      37      73 .. 0.52

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.1e-06
     Fer4_17 42 kaslCieCgeCerkCPqg 59
                +as+C++C  Ce +CP+g
  CCG92382.1  6 VASQCTGCSACEPECPNG 23
                799*************97 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.012
     Fer4_17  1 rCiqCgyClpeCpsyeaydn 20
                +C++C++C+peCp +++y++
  CCG92382.1  9 QCTGCSACEPECPNGAIYEK 28
                58888888888888887766 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.16
     Fer4_17  2 CiqCgy......ClpeCpsyeay 18
                C++C        C+ +Cp  +  
  CCG92382.1 39 CTECIGffdepqCVSVCPVDNTC 61
                66665333444477777765554 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   3.3   0.00019      0.26       4      16 ..      10      22 ..       7      27 .. 0.91
   2 !   10.7   6.5   0.00047      0.64       2      16 ..      37      57 ..      36      59 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
      Fer4_4  4 CigCgsCvaaCPq 16
                C+gC +C+  CP 
  CCG92382.1 10 CTGCSACEPECPN 22
                ************5 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00047
      Fer4_4  2 erC......igCgsCvaaCPq 16
                e+C      ++ ++Cv++CP+
  CCG92382.1 37 EKCtecigfFDEPQCVSVCPV 57
                7884445555999*******7 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   3.5   9.6e-06     0.013      34      57 ..       3      25 ..       1      27 [. 0.87
   2 !    6.4   7.3    0.0073        10      33      56 ..      31      60 ..      24      63 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.6e-06
     Fer4_21 34 lkvvedeCvGCnlCssvCPvedci 57
                +k+v+++C+GC  C   CP +++i
  CCG92382.1  3 YKIVASQCTGCSACEPECP-NGAI 25
                578999*************.5777 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0073
     Fer4_21 33 vlkvvedeCvGC......nlCssvCPvedc 56
                ++++  ++C+ C        C+svCPv++ 
  CCG92382.1 31 IFAIDPEKCTECigffdePQCVSVCPVDNT 60
                55667788888854454448*******764 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   7.9   1.7e-05     0.023       1      31 [.       9      40 ..       9      47 .. 0.83
   2 ?    1.5   6.6      0.43   5.9e+02       7      15 ..      50      58 ..      36      74 .] 0.71

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.7e-05
     Fer4_16  1 rCgtCgkCaevCPtnaikek.kekeieareci 31
                +C++C +C   CP +ai ek   + i++++c+
  CCG92382.1  9 QCTGCSACEPECPNGAIYEKeGIFAIDPEKCT 40
                6*****************99445667777775 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.43
     Fer4_16  7 kCaevCPtn 15
                +C++vCP++
  CCG92382.1 50 QCVSVCPVD 58
                688888876 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   4.2   5.2e-05     0.071       3      63 ..       8      22 ..       6      36 .. 0.66
   2 ?    5.5   2.5     0.017        24      50      64 ..      38      58 ..      33      59 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.2e-05
      Fer4_8  3 ekCieCgaCqsaCpvlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpv 63
                ++C++C+aC+ +Cp                                              +
  CCG92382.1  8 SQCTGCSACEPECP----------------------------------------------N 22
                56666666666666..............................................3 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.017
      Fer4_8 50 sCttcga......CtevCpvg 64
                +Ct+c        C++vCpv+
  CCG92382.1 38 KCTECIGffdepqCVSVCPVD 58
                677776666677788888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 525.12
//
Query:       CCG92383.1  [L=522]
Description: FeMo cofactor biosynthesis protein nifB [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-30  107.1   0.7      2e-30  106.4   0.1    1.8  2  Radical_SAM    Radical SAM superfamily
    2.2e-20   72.7   1.7    2.7e-20   72.5   0.2    2.0  2  Nitro_FeMo-Co  Dinitrogenase iron-molybdenum cofactor
    0.00046   20.3   0.1     0.0017   18.5   0.0    2.0  2  Fer4_14        4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.014   15.7   0.0      0.046   14.0   0.0    1.8  2  Fer4_12        4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.1   4.5e-34     2e-30       3     163 ..      82     260 ..      80     264 .. 0.94
   2 ?   -4.0   0.1       3.7   1.6e+04      33      42 ..     370     379 ..     359     401 .. 0.54

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 4.5e-34
                  EESEESS--TTTSCCTT....HHHHHHHHHHHHHHHHHHHHHHH.HHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHH CS
                  xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpet....vrregrgrslsveeileevkelk.aekg.vkevilgggepllypdfvellerlaklavpgiritvetngtlpdeekl 94 
                  v ++Cn +C++C+r+++    +r++++++ l++ee +++v +++   ++ +   i g g+pl++pd+++++++l++++ p+i+++++tng+ + +e++
   CCG92383.1  82 VAPACNIQCNYCNRKYDcaneSRPGVVSERLTPEEAAKKVLAVAsLIPQmTVLGIAGPGDPLANPDKTFKTFELVAKKAPDIKLCLSTNGLAL-PEYV 178
                  789****************************************87666668888888************************************.**** PP

                  HHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHH................HHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  95 erllelgvdrvslgleaaddekvlklmnrghtf................eevlealeklreagikrvvdrivglpGendeeleel 163
                  +r+++ +vd+v+++++ +d+e v +++  ++ f                e++le+le+l++  i  ++++ v++pG nde+l e+
   CCG92383.1 179 KRIKDFNVDHVTITINMIDPE-VGEKI-YPWVFykhkrykgkeaakilsERQLEGLEMLTAEKIL-CKINSVMIPGINDEHLIEV 260
                  *********************.99999.77777999999999999********************.***************9986 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3.7
                  HHHHHHHHHH CS
                  xxxxxxxxxx RF
  Radical_SAM  33 eileevkelk 42 
                  e ++e+ke++
   CCG92383.1 370 EREKELKEIA 379
                  3333333332 PP

>> Nitro_FeMo-Co  Dinitrogenase iron-molybdenum cofactor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       2.2   9.7e+03      33      60 ..     362     390 ..     347     392 .. 0.54
   2 !   72.5   0.2   6.1e-24   2.7e-20       2      93 ..     396     490 ..     395     492 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.2
                    .GCCCTSSCSSTHHHHHHHH.TT-SEEEE CS
  Nitro_FeMo-Co  33 eeaadaegggggklaqllae.egvdvviv 60 
                    +e ++   ++++ l+++++e +  +++++
     CCG92383.1 362 QERQKRVAEREKELKEIAKEnSELKILVA 390
                    22344444666777777776666666665 PP

  == domain 2  score: 72.5 bits;  conditional E-value: 6.1e-24
                    TSCB-STCCC-SEEEEEEESSSCEEEEEEE.E.GCCCTSSCSSTHHHHHHHH.TT-SEEEESSSCHHHHHHHCTTTSEEEES.-SSBHHHHHHHH CS
  Nitro_FeMo-Co   2 gsrvdqhFGrapyFaiyeveegevkivenr.veeaadaegggggklaqllae.egvdvvivgkiGpralakleaagievykg.aggtveealkev 93 
                    g+++++hFG+a++F+iye+++++ k++ +r v+ +++++ g++++l+ ++ + +++ +v+v+kiG +++++le+agie +   a + +e+a   +
     CCG92383.1 396 GGKINEHFGHAKEFQIYELSTKGSKFIGHRrVDLYCQGGYGEEDALETVIRAiRDCVAVFVAKIGSCPKEALEKAGIETVDRfAYEYIEKAALSY 490
                    689******************************************************************************99999999987655 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.7e-07    0.0017       7      92 ..      85     174 ..      80     197 .. 0.72
   2 ?   -2.3   0.1       1.1   4.8e+03      30      30 ..     365     365 ..     331     397 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.7e-07
     Fer4_14   7 gCnlsCkgCdnketwks......elgkpqteelleqilkdlkkseikiqglvltG.GePLhyenkkellklvkrlkeeypekkiwletngtle 92 
                  Cn++C  C +k + ++       ++    ee  +++l  +     ++  l + G G+PL  +n ++ +k  + + ++ p++k  l tng++ 
  CCG92383.1  85 ACNIQCNYCNRKYDCANesrpgvVSERLTPEEAAKKVL-AVASLIPQMTVLGIAGpGDPL--ANPDKTFKTFELVAKKAPDIKLCLSTNGLAL 174
                 6******9997776666233332444444455555555.3333333445678999*****..99*************************9875 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.1
     Fer4_14  30 t 30 
                 +
  CCG92383.1 365 Q 365
                 2 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     1e-05     0.046      14     102 ..      85     180 ..      75     196 .. 0.78
   2 ?   -3.2   0.0         2     9e+03      18      45 ..     316     345 ..     314     355 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1e-05
     Fer4_12  14 gCnlsCkgCfnketwsfk.......sgkeftkelleeiiedlkkesiegltllG....GEPllpenaeallelvkevkeekp.ekdiwlytgytleels 100
                  Cn++C++C n++  + +       s++ +++e+++++++ +  + i+++t+lG    G+Pl+  n ++  + ++ v +++p  k +++++g  l e  
  CCG92383.1  85 ACNIQCNYC-NRKYDCANesrpgvvSERLTPEEAAKKVLAVA--SLIPQMTVLGiagpGDPLA--NPDKTFKTFELVAKKAPdIKLCLSTNGLALPEYV 178
                 6*******7.57777777455666566666799999999777..6667777776666******..*****************87899999999888776 PP

     Fer4_12 101 kk 102
                 k+
  CCG92383.1 179 KR 180
                 54 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2
     Fer4_12  18 sCkgCfnketw..sfksgkeftkelleeii 45 
                 +C+ C + ++     +++ eftke ++ i 
  CCG92383.1 316 HCRQCRADAVGllGEDRSSEFTKEKIASIE 345
                 788887665431144566667777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1557  (0.0868425); expected 358.6 (0.02)
Passed bias filter:                      833  (0.046461); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 3389.48
//
Query:       CCG92384.1  [L=550]
Description: Mercuric ion reductase, contains HMA domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-60  203.1   0.0    9.5e-60  202.3   0.0    1.4  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    4.1e-31  107.5   1.3    4.4e-31  107.4   0.2    1.7  1  Pyr_redox_dim   Pyridine nucleotide-disulphide oxidoreductase
    1.8e-18   66.8   3.3    2.1e-14   53.8   0.0    3.8  3  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    1.7e-13   50.5   1.2    2.5e-09   36.8   0.0    2.2  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    7.1e-06   25.4  11.5     0.0036   16.5   5.8    4.2  4  GIDA            Glucose inhibited division protein A
      1e-05   25.1   3.6      1e-05   25.1   3.6    2.4  3  FAD_oxidored    FAD dependent oxidoreductase
    2.8e-05   24.5   0.0    7.6e-05   23.1   0.0    1.8  1  HMA             Heavy-metal-associated domain
    3.9e-05   22.9   0.1      0.024   13.8   0.0    2.9  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    0.00019   21.4   0.0    0.00044   20.2   0.0    1.6  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
    0.00019   20.8   1.9       0.17   11.2   0.7    2.9  3  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    0.00045   19.6   1.8      0.014   14.6   0.0    2.2  2  FAD_binding_3   FAD binding domain
     0.0018   17.0  10.8       0.21   10.2   2.1    3.9  4  HI0933_like     HI0933-like protein
     0.0026   18.2   0.1        1.6    9.2   0.0    2.6  2  NAD_binding_7   Putative NAD(P)-binding
     0.0042   16.4   3.5       0.31   10.3   0.8    2.4  2  Thi4            Thi4 family
  ------ inclusion threshold ------
       0.01   16.0   7.4        1.2    9.5   0.0    2.6  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      0.017   14.5   0.2       0.11   11.8   0.0    2.2  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.026   13.6   6.8       0.38    9.7   0.2    2.3  2  Lycopene_cycl   Lycopene cyclase protein
      0.041   14.4   0.2        1.3    9.5   0.0    2.8  3  XdhC_C          XdhC Rossmann domain
      0.093   12.9   0.1       0.22   11.7   0.1    1.6  1  Tox-PL-2        Papain fold toxin 2
       0.14   11.2  13.3      0.054   12.6   6.2    2.7  3  FAD_binding_2   FAD binding domain
       0.28   10.0   1.5       0.47    9.2   1.5    1.3  1  Trp_halogenase  Tryptophan halogenase
        1.9    8.0   9.1        4.6    6.7   1.9    2.9  3  DAO             FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.3   0.0   1.2e-62   9.5e-60       1     290 [.      87     402 ..      87     406 .. 0.87

  Alignments for each domain:
  == domain 1  score: 202.3 bits;  conditional E-value: 1.2e-62
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH..........................HHHHCHHHH.CC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx..........................xxxxxxxxx.xx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias..........................evvkklnqg.ie 68 
                  +d++++GgG A++aaa+++++ gakv +ve    +gtc+n+gc++sk l ++ae +  a+                             + l+ + ++
   CCG92384.1  87 YDLLIVGGGSAAFAAAIKASELGAKVGIVEsgvIGGTCVNVGCVPSKFLIRAAEVYTMARnprfaglgscnmpldwaelidqkeklV--SLLRMQkYI 182
                  6899*************************999************************9999*****************8887776431..322222244 PP

                  CCHCCT.CEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT CS
                  xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  69 lllgee.vvkidpgkkkvklekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklg 165
                   ll++   +++++gk+++    +   ++++++  k++lAtGssp +++ipG++e++      lds+ al+ k lp +++v+GgG+iG+El +++a++g
   CCG92384.1 183 HLLDVYpNISLIEGKARLRAGIQLIVNNKTYTSRKILLATGSSPSIPPIPGLKETG-----FLDSTTALSVKTLPSSLAVIGGGAIGLELGQMFARFG 275
                  44444446777777766666444448889***********************6666.....47*********************************** PP

                  -EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.EEEEEETTSCE...EEESEEEE-S-EEES-HHCS.HCCT-EEEETTEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Pyr_redox_2 166 kevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgnge.klevvledgee...idadlvvvavGvrpstelle.eklglelderggi 258
                  ++v+++ea++ +  + ++e++++l  +l++e +e+ ++++v  +++ ge       ++ge+   + ++ ++v +G++p+t+ l+ e++g++  +rg i
   CCG92384.1 276 VRVHIIEALPSIAMSEEPEIREQLSLYLKEERIELFTNSQVRYVEKTGEnGCFISIQNGEKeigLRVEKILVTTGRSPNTAELGlEEVGVKKGSRGEI 373
                  *************99******************************9999744433333333368********************************** PP

                  E--TTSBESSTTEEE-GGGCTECCSS--HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 259 vvdeflrtnvpgiyaiGDvaggkggpelaqaA 290
                  +vd+flrt+ p+iya+GD+a   g p+ ++++
   CCG92384.1 374 LVDSFLRTTNPDIYAAGDCA---GLPQFVYVS 402
                  ********************...999988876 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   0.2   5.5e-34   4.4e-31       2     109 ..     427     534 ..     426     535 .. 0.98

  Alignments for each domain:
  == domain 1  score: 107.4 bits;  conditional E-value: 5.5e-34
                    EEEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTSBS CS
  Pyr_redox_dim   2 ptvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladtih 97 
                    p+v+ftdp++asvGlte++Ak++g+++ +  fp+k++ +a+++ +t+g++Klv + +tgk++Gah+++  ag+ iqe+ +ai+ glt++d+ d +h
     CCG92384.1 427 PRVTFTDPQIASVGLTEAQAKKEGLNVITSIFPVKEVPKAIISLDTRGLIKLVSETNTGKLVGAHVLAAAAGDFIQEAVLAIRHGLTIQDIVDAFH 522
                    99********************************************************************************************** PP

                    SSSSTGGGGHCH CS
  Pyr_redox_dim  98 ihPtlsealkea 109
                    ++ t+sea+k a
     CCG92384.1 523 PYLTMSEAIKLA 534
                    *********987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       2.1   1.7e+03      13      32 ..      56      75 ..      56      83 .. 0.82
   2 !    9.1   1.7    0.0023       1.9       2      30 ..      89     117 ..      88     119 .. 0.94
   3 !   53.8   0.0   2.6e-17   2.1e-14       2      71 ..     255     324 ..     254     332 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 2.1
                HHHHHHHHTTSEEEEEESSS CS
   Pyr_redox 13 ElAgalaelgkkVtvversd 32
                E+ +++ +lg + tv+er++
  CCG92384.1 56 EVLQTIEALGYQGTVIERMP 75
                56677899**********97 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0023
                 EEEECSSHHHHHHHHHHHHTTSEEEEEES CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvver 30 
                 +++vGgG  +  +A  ++elg+kV +ve 
  CCG92384.1  89 LLIVGGGSAAFAAAIKASELGAKVGIVES 117
                 69************************985 PP

  == domain 3  score: 53.8 bits;  conditional E-value: 2.6e-17
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETT CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsed 71 
                 ++v+GgG iglEl++++a++g +V+++e+ + +   +++e+++ l  +l+++ ie+ +n++v  +e++++
  CCG92384.1 255 LAVIGGGAIGLELGQMFARFGVRVHIIEALPSIAMSEEPEIREQLSLYLKEERIELFTNSQVRYVEKTGE 324
                 79***************************************************************98776 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   2.8   0.00047      0.38       1      35 [.      90     123 ..      90     135 .. 0.92
   2 !   36.8   0.0   3.1e-12   2.5e-09     112     305 .]     202     390 ..     163     390 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00047
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgnigns 35 
                  +I+G+G a  aaai++ ++g  ++ i+E g ig +
   CCG92384.1  90 LIVGGGSAAFAAAIKASELGA-KVGIVESGVIGGT 123
                  6********************.7*******99865 PP

  == domain 2  score: 36.8 bits;  conditional E-value: 3.1e-12
  Pyr_redox_3 112 egfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsys 209
                   g ++  +++ty+++k+++AtG    P  + ipG +++    s+     k+    ++ViGg+  + +    ++r g +V+++    +i  +e      
   CCG92384.1 202 AGIQLIVNNKTYTSRKILLATGS--SPSIPPIPGLKETGFLDSTTALSVKTLPSSLAVIGGGAIGLELGQMFARFGVRVHIIEALPSIAMSE------ 291
                  567888899*************9..***********99999999997778999*******************************99877776...... PP

  Pyr_redox_3 210 lkpdienrleelvkeekikvlfnaevkeikekeee.ykvktedgkk.vevkddvvla.tGykpdlsf..lkkslfeldedgrpvlteeteetnvpglf 302
                   +p i+++l  ++kee+i++ +n++v+ ++++ e+   ++ ++g+k +  + + +l+ tG +p++    l++ ++++ + g++++++    t  p+++
   CCG92384.1 292 -EPEIREQLSLYLKEERIELFTNSQVRYVEKTGENgCFISIQNGEKeIGLRVEKILVtTGRSPNTAElgLEEVGVKKGSRGEILVDSFLRTT-NPDIY 387
                  .8***************************988655256777776551555666677769*****8772455688888888888888776655.69999 PP

  Pyr_redox_3 303 laG 305
                   aG
   CCG92384.1 388 AAG 390
                  988 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.9     4e+03     311     346 ..      18      57 ..       6      64 .. 0.57
   2 !   16.5   5.8   4.4e-06    0.0036       1      71 [.      88     164 ..      88     250 .. 0.65
   3 !    5.7   0.0    0.0079       6.4       3      31 ..     256     283 ..     254     332 .. 0.84
   4 ?    2.7   0.0     0.065        53     350     388 ..     379     417 ..     371     420 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.9
                 HHHHHHHHTTSTT-TT--EEE-....-EEEEEEEE-GGGB CS
        GIDA 311 eevqkevlrsipGLenaeivrp....Gyaieydyvdprql 346
                 ++  k+ l++++G+e++ i+++    + ++  +  +++++
  CCG92384.1  18 ATHLKRALQKLQGIERVLITDWrskrASLVTTQQWNEQEV 57 
                 5556777777778777777665444444554444444444 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 4.4e-06
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE..ES-GGGTT--SSSSEEE-T...THHHHHHHHHHHT.-SHHHHHHHHE CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi..thkldtiaelsCnpsiggi...akgllvrEidalg.gliikaadkag 71 
                 d+ ++GgG A ++AA++a++lGakv ++      +t+++++C ps   i    ++++ r  +  g g +    d a+
  CCG92384.1  88 DLLIVGGGSAAFAAAIKASELGAKVGIVesGVIGGTCVNVGCVPSKFLIraaEVYTMARNPRFAGlGSCNMPLDWAE 164
                 5789************************7766789**********98884434455555555544444444444444 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0079
                 EEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLithk 31 
                  ViGgG  G+e     ar G++v +i + 
  CCG92384.1 256 AVIGGGAIGLELGQMFARFGVRVHII-EA 283
                 7***********************99.33 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.065
                 SBBSSSBTEEE-CGGGTB-SHHHHHH.HHHHHHHHHHHHH CS
        GIDA 350 LetkkvkgLflAGqinGteGYeEaaa.qGllAGinaarka 388
                 L+t +++++++AG+  G   ++   a +G +A+ na + a
  CCG92384.1 379 LRT-TNPDIYAAGDCAGLPQFVYVSAfTGGIAAENAINGA 417
                 455.499***********7766544447888888887665 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   3.6   1.2e-08     1e-05       1      42 [.      88     128 ..      88     141 .. 0.90
   2 ?   -2.2   0.1       2.5     2e+03       3      32 ..     256     285 ..     255     288 .. 0.90
   3 ?   -0.5   0.0      0.75   6.1e+02      95     127 ..     301     333 ..     288     343 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.2e-08
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsgl 42 
                   D+++vGGg+a +aAAi A + Gakv +ve +gv+GG+  + +
    CCG92384.1  88 DLLIVGGGSAAFAAAIKASELGAKVGIVE-SGVIGGTCVNVG 128
                   99**************************8.5899**987755 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
  FAD_oxidored   3 vVvGGgpaGvaAAiaAaraGakvlLveerg 32 
                    V+GGg+ G+      ar G +v ++e  +
    CCG92384.1 256 AVIGGGAIGLELGQMFARFGVRVHIIEALP 285
                   69***********************99765 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.75
  FAD_oxidored  95 emlaeagvtvllntrlvevekegkriesvtves 127
                     l+e+++++++n++++ vek+g++   + +++
    CCG92384.1 301 LYLKEERIELFTNSQVRYVEKTGENGCFISIQN 333
                   457999***************986655555543 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   9.3e-08   7.6e-05       2      29 ..       7      34 ..       6      67 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 9.3e-08
         HMA  2 vrvsgmhCagCaakvekvLselpgVesv 29
                ++++gm C+ Ca + +++L++l+g+e v
  CCG92384.1  7 LQIEGMKCEDCATHLKRALQKLQGIERV 34
                689**********************866 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.5   4.1e+02       3      21 ..      87     105 ..      43     115 .. 0.71
   2 !   13.8   0.0   2.9e-05     0.024     143     206 ..     209     267 ..     197     299 .. 0.82
   3 ?    5.0   0.0     0.013        11     290     339 ..     303     350 ..     294     352 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.5
  K_oxygenase   3 lDligiGiGpsnLsLaill 21 
                  +Dl ++G G ++ + ai +
   CCG92384.1  87 YDLLIVGGGSAAFAAAIKA 105
                  5555555555555555555 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.9e-05
  K_oxygenase 143 eeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaei 206
                  +++++++r+++l++G++p+iP++   l+ +  ++ s ++l+ k     + ++aV+G+G  + e+
   CCG92384.1 209 NNKTYTSRKILLATGSSPSIPPIPG-LK-ETGFLDSTTALSVK---TLPSSLAVIGGGAIGLEL 267
                  46899****************9866.66.36777777777776...7899********988876 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.013
  K_oxygenase 290 kgeerlrllpnrevesaeaegkgeveltlrneesgeeetlevdavvlATG 339
                   +eer++l +n++v+ +e++g++++ ++++n e  +e  l+v+ +++ TG
   CCG92384.1 303 LKEERIELFTNSQVRYVEKTGENGCFISIQNGE--KEIGLRVEKILVTTG 350
                  46889*****************9******9955..556788888888888 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.4e-07   0.00044       2      56 ..     255     309 ..     254     325 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.4e-07
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS- CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklk 56 
                 +aviG G +G ++ ++fa+ g++V++++  ++++ + + +i+++l+   ++++++
  CCG92384.1 255 LAVIGGGAIGLELGQMFARFGVRVHIIEALPSIAMSEEPEIREQLSLYLKEERIE 309
                 69*****************************************999998888876 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.7   0.00021      0.17      31      58 ..      89     116 ..      83     120 .. 0.91
   2 !    7.1   0.0    0.0035       2.9      23      61 ..     248     285 ..     237     340 .. 0.85
   3 ?   -1.9   0.0         2   1.6e+03      19      49 ..     388     419 ..     377     422 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
                  EEEESTSHHHHHHHHHHHHTT-EEEEEE CS
  AlaDh_PNT_C  31 vlviGgGvaGlqAiatakglgakVtvlD 58 
                   l++GgG a  +A+  a++lgakV +++
   CCG92384.1  89 LLIVGGGSAAFAAAIKASELGAKVGIVE 116
                  68**********************9986 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0035
                  ETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C  23 vpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrp 61 
                  v+ + p+   viGgG  Gl+  ++ +++g +V +++  p
   CCG92384.1 248 VK-TLPSSLAVIGGGAIGLELGQMFARFGVRVHIIEALP 285
                  55.678999************************998755 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2
                  TTCEETCB--.-EEEEESTSHHHHHHHHHHHH CS
  AlaDh_PNT_C  19 laGgvpgvep.akvlviGgGvaGlqAiatakg 49 
                  +aG + g  +   v  + gG+a  +Ai+ ak+
   CCG92384.1 388 AAGDCAGLPQfVYVSAFTGGIAAENAINGAKR 419
                  5666665533144566789********99986 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.4      0.03        25       2      31 ..      87     116 ..      86     118 .. 0.93
   2 !   14.6   0.0   1.7e-05     0.014       5      34 ..     256     285 ..     253     306 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.03
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlve 31 
                    +d lIVG+G a + +a   se G +v +ve
     CCG92384.1  87 YDLLIVGGGSAAFAAAIKASELGAKVGIVE 116
                    6889**********************9998 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.7e-05
                    EEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    +++G+G  Gl l+++ ++ Gvrv+++e   
     CCG92384.1 256 AVIGGGAIGLELGQMFARFGVRVHIIEALP 285
                    69*************************865 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   2.1   0.00026      0.21       2      32 ..      88     118 ..      87     126 .. 0.92
   2 ?   -0.2   0.0      0.39   3.2e+02     143     168 ..     202     229 ..     176     235 .. 0.76
   3 !    5.1   0.6    0.0092       7.5       3      35 ..     255     287 ..     253     290 .. 0.90
   4 ?    3.9   0.0     0.021        17     111     164 ..     295     351 ..     288     369 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00026
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVllleka 32 
                  d++++GgG A + aAi+a++ g++V ++e++
   CCG92384.1  88 DLLIVGGGSAAFAAAIKASELGAKVGIVESG 118
                  789************************9986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.39
                  EEEEE..TTEEEEESEEEE----S.S-G CS
  HI0933_like 143 frvkt.kseeeleadklvlAtGGl.SiP 168
                    +++  ++++++++k++lAtG+  SiP
   CCG92384.1 202 AGIQLiVNNKTYTSRKILLATGSSpSIP 229
                  444544599************9742555 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0092
                  EEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVlllekakkl 35 
                  ++viGgGa Gl      a+ g rV ++e+ +++
   CCG92384.1 255 LAVIGGGAIGLELGQMFARFGVRVHIIEALPSI 287
                  79**************************97766 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.021
                  HHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEE...EEESEEEE---- CS
  HI0933_like 111 ivdallkelkeagvklrletevksvekeedgkfrvktkseee...leadklvlAtGG 164
                  i + l   lke++++l ++++v+ vek+ ++   ++++++e+   l+ +k++++tG 
   CCG92384.1 295 IREQLSLYLKEERIELFTNSQVRYVEKTGENGCFISIQNGEKeigLRVEKILVTTGR 351
                  6677888899*****************999999888854432233789999999984 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0     0.002       1.6       7      40 ..      86     119 ..      83     167 .. 0.84
   2 ?    6.3   0.0     0.016        13      10      39 ..     255     284 ..     246     349 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.002
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvapev 40 
                    +   l+vGgG+ A   + k  e gakv +v   v
     CCG92384.1  86 DYDLLIVGGGSAAFAAAIKASELGAKVGIVESGV 119
                    5678***********************9997765 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.016
  NAD_binding_7  10 vlvvGgGevAarkvrklleagakvtvvape 39 
                      v+GgG ++++  + ++++g +v+++   
     CCG92384.1 255 LAVIGGGAIGLELGQMFARFGVRVHIIEAL 284
                    67************************6433 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.8   0.00038      0.31      17      67 ..      86     134 ..      77     142 .. 0.79
   2 !    6.0   0.1    0.0073       5.9      17      49 ..     252     283 ..     241     290 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00038
                 EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTBSEE CS
        Thi4  17 esDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlfsai 67 
                 + D++ivG+Gs+  +aa   ++  + kv i+e+ v +GG     G + s+ 
  CCG92384.1  86 DYDLLIVGGGSAAFAAAIKASEL-GAKVGIVESGV-IGGTCVNVGCVPSKF 134
                 579*************9998888.********998.566555555555555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0073
                 EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4  17 esDvvivGaGssGLtaayylakkpdlkvailer 49 
                  s ++++G+G+ GL  ++++a+  +++v i+e+
  CCG92384.1 252 PSSLAVIGGGAIGLELGQMFARF-GVRVHIIEA 283
                 57789*****************9.********7 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.5      0.01       8.3       1      35 [.      91     124 ..      91     128 .. 0.93
   2 ?    9.5   0.0    0.0014       1.2       1      31 [.     257     287 ..     257     294 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.01
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGra 35 
                    IvG+G ++ +aA  +++ g++v ++e++  +GG +
     CCG92384.1  91 IVGGGSAAFAAAIKASELGAKVGIVESG-VIGGTC 124
                    9*************************98.888876 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0014
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31 
                    ++G+G+ Gl + +  a+ g++v+++e+ +++
     CCG92384.1 257 VIGGGAIGLELGQMFARFGVRVHIIEALPSI 287
                    8*************************98876 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.73   5.9e+02      38      65 ..      88     115 ..      78     127 .. 0.74
   2 ?   11.8   0.0   0.00014      0.11      37      70 ..     253     286 ..     234     309 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.73
                   EEEEES-SHHHHHHHHHHHHTT-EEEEE CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlkafgmkviay 65 
                    + i+G G+ + a+a +++++g+kv ++
    CCG92384.1  88 DLLIVGGGSAAFAAAIKASELGAKVGIV 115
                   5678888888888888888888877554 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00014
                   SEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgmkviaydrskk 70 
                   + +++iG G+IG ++ ++++ fg++v +++  ++
    CCG92384.1 253 SSLAVIGGGAIGLELGQMFARFGVRVHIIEALPS 286
                   6799**********************99987766 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   2.1    0.0062       5.1       1      33 [.      88     118 ..      88     121 .. 0.93
   2 ?    9.7   0.2   0.00047      0.38       2      37 ..     255     288 ..     254     293 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0062
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieas 33 
                    D++++G+G A  + A +   ++ g kv+++e++
     CCG92384.1  88 DLLIVGGGSAAFAAAIKA--SELGAKVGIVESG 118
                    99********99999998..**********986 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00047
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsll 37 
                    ++viG+G+ gl l +    a+ g++v +iea ps+ 
     CCG92384.1 255 LAVIGGGAIGLELGQMF--ARFGVRVHIIEALPSIA 288
                    78***************..************99985 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.1   2.5e+03      12     110 ..      56      81 ..      47      87 .. 0.55
   2 ?    1.0   0.2      0.71   5.8e+02       1      28 [.      89     116 ..      89     121 .. 0.92
   3 ?    9.5   0.0    0.0016       1.3       1      36 [.     255     290 ..     255     343 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.1
                 HHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE-EEEE--S-HHHHHHHHHHHSSS--SEEEESS-HHHHHHHCTTS.--.......TTEESS-S--S- CS
      XdhC_C  12 alarlaaalgfrvtvvdpreefatkerfpeadetavvvlthdhklDaealeaalrkkaayigllGSrkkaarrlerlraaglseeelarlhaPiGldig 110
                 ++ +  +alg++ tv++                                                                          +PiG+d +
  CCG92384.1  56 EVLQTIEALGYQGTVIER-------------------------------------------------------------------------MPIGMDSE 81 
                 444444445555444444.........................................................................45555544 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.71
                 EEEE--STTHHHHHHHHHHHTEEEEEEE CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvd 28 
                 l+i+G+g  a a a  a++lg +v +v+
  CCG92384.1  89 LLIVGGGSAAFAAAIKASELGAKVGIVE 116
                 79*********************99886 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0016
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-G CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefatk 36 
                 l+++G+g ++ +l ++ a++g+rv+++++ +++a  
  CCG92384.1 255 LAVIGGGAIGLELGQMFARFGVRVHIIEALPSIAMS 290
                 789*************************99987733 PP

>> Tox-PL-2  Papain fold toxin 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00027      0.22       9      65 ..       5      62 ..       2      75 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00027
    Tox-PL-2  9 ivkrfklleCveCAaalekyLkeqgisGkrlklktksaedaasfilserlekqaa...is 65
                +  +++ ++C++CA+ l+++L+  +++G +  l t  + ++as ++ ++ ++q++   i 
  CCG92384.1  5 VLLQIEGMKCEDCATHLKRALQ--KLQGIERVLITDWRSKRASLVTTQQWNEQEVlqtIE 62
                66688999************95..678888888899888889999999888887655455 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   6.2   6.6e-05     0.054       1      31 [.      88     118 ..      88     125 .. 0.93
   2 ?    2.1   0.4     0.097        79       3      33 ..     256     286 ..     254     291 .. 0.90
   3 ?   -2.8   0.0         3   2.5e+03     391     403 ..     382     394 ..     373     397 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-05
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESS CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavveke 31 
                    D++++G+G A  aAA++a+e G+kv +ve +
     CCG92384.1  88 DLLIVGGGSAAFAAAIKASELGAKVGIVESG 118
                    89**************************976 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.097
                    EEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvekeqe 33 
                     ViG+G+ GL  +   a+ G +v ++e  ++
     CCG92384.1 256 AVIGGGAIGLELGQMFARFGVRVHIIEALPS 286
                    7*************************99876 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3
                    SSBTEEE-STCEE CS
  FAD_binding_2 391 pipGLYAaGevaa 403
                    + p+ YAaG +a+
     CCG92384.1 382 TNPDIYAAGDCAG 394
                    77999******94 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.5   0.00057      0.47       2      47 ..      89     131 ..      88     137 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00057
                     EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS-EE--T CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvGeatip 47 
                     ++ivGGG+a++ aA+  ++ +   ++v +ves  ig   v  + +p
      CCG92384.1  89 LLIVGGGSAAFAAAIKASELG---AKVGIVESGVIGGTCVNVGCVP 131
                     78***********99999998...89*********98777666666 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.9    0.0056       4.6       1      36 [.      88     123 ..      88     147 .. 0.91
   2 ?    4.2   0.4     0.033        27       2      29 ..     255     284 ..     254     291 .. 0.84
   3 ?   -0.6   0.0      0.96   7.8e+02     158     225 ..     305     374 ..     298     392 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0056
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSG CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsga 36 
                 d++i+GGG +  ++A  +++ g  V ++e+g  +g g+
  CCG92384.1  88 DLLIVGGGSAAFAAAIKASELGakVGIVESG-VIG-GT 123
                 789*****************999********.777.54 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.033
                 EEEECTSHHHHHHHHHHHHTT..EEEEESS CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekg 29 
                 +++iGGG iGl      ar g  V ++e+ 
  CCG92384.1 255 LAVIGGGAIGLELGQMFARFGvrVHIIEAL 284
                 58*********9999998889999999985 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.96
                 HTT-EEEESECEEEEEEEE..TCEEEEE.....EECT.EEEEEEEEEEE--GGGHH..HHHTT.CTTTSEEEEEEEEEE CS
         DAO 158 alGveilegtevtgleeed..gkvwgve.....rttp.gendaadavVnaaGawsd..llgll.keldlpispvrgqvl 225
                 +  +e++++++v+ +e+++  g     +      +++ g +  ++++ +++G   +  +l    +e+ ++ ++ rg++l
  CCG92384.1 305 EERIELFTNSQVRYVEKTGenGC----FisiqnGEKEiGLR--VEKILVTTGRSPNtaEL--GlEEVGVK-KGSRGEIL 374
                 56689999*****9988653344....34344555555554..799*****943332122..11222223.66666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 3753.36
//
Query:       CCG92385.1  [L=139]
Description: Copper resistance operon regulatory protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-17   64.0   0.9    2.2e-17   62.9   0.0    1.8  2  MerR_1         MerR HTH family regulatory protein
    4.3e-16   58.4   0.2    7.6e-16   57.6   0.2    1.4  1  MerR           MerR family regulatory protein
    1.3e-14   54.4   1.9    1.9e-14   53.9   1.9    1.3  1  MerR-DNA-bind  MerR, DNA binding
  ------ inclusion threshold ------
      0.018   14.5   0.0       0.31   10.6   0.0    2.4  2  Sigma70_r4     Sigma-70, region 4
      0.052   13.7   0.2       0.39   10.9   0.0    2.3  2  HTH_17         Helix-turn-helix domain
      0.083   12.7   0.1       0.15   11.9   0.1    1.4  1  SinI           Anti-repressor SinI
       0.12   12.1   0.0       0.23   11.3   0.0    1.4  1  DASH_Dam1      DASH complex subunit Dam1
       0.14   12.2   0.4        3.7    7.6   0.0    2.1  2  DUF1836        Domain of unknown function (DUF1836)
        1.6    8.7   5.8       0.28   11.2   2.4    1.4  2  Prefoldin_2    Prefoldin subunit


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   1.1e-20   2.2e-17       2      66 ..      11      76 ..      10      77 .. 0.94
   2 ?   -1.0   0.1      0.95   1.9e+03      42      51 ..     101     110 ..      90     116 .. 0.55

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 1.1e-20
                EHHHHHHHHTS-HHHHHHHHHHTT-S-EE.-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XX CS
      MerR_1  2 sigevakilgvtthtlrywekegllkpkr.teggrryYtdedierLklikyLlkrGltlkgikkll 66
                +ig+va+++gv + t+r++e++gll+ +  + +g+r+Y+++ ++++ +ik+ ++ Gl+l +ik+ll
  CCG92385.1 11 TIGKVANMAGVGVETIRFYERKGLLPKPArSLTGYRLYDQNALKTISFIKRAKELGLSLNEIKELL 76
                9***********************66555599********************************97 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.95
                 HHHHHHHHHH CS
      MerR_1  42 dierLkliky 51 
                  i+ L++ik+
  CCG92385.1 101 RIKDLRRIKE 110
                 3444444444 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.2   3.8e-19   7.6e-16       1      38 []      11      48 ..      11      48 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 3.8e-19
                EHHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                tIg vA ++Gv + t+R+YEr+GL+p+p R+ +GyRlY
  CCG92385.1 11 TIGKVANMAGVGVETIRFYERKGLLPKPARSLTGYRLY 48
                8************************************9 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   1.9   9.5e-18   1.9e-14       2      65 .]      54     115 ..      53     115 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 9.5e-18
                    HHHHHHHHHHHTT--HHHHHHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind   2 eRLkfIrrarrlGFsLdeIrelLalyddrappcqdvrallarklaeleeriaeLqalraeLaal 65 
                    + + fI+ra++lG+sL eI+elL l+++   +cq v++ +  k+++le+ri++L+++++ L++l
     CCG92385.1  54 KTISFIKRAKELGLSLNEIKELLFLPKE--GSCQRVLQKVMLKIEDLEKRIKDLRRIKESLETL 115
                    5689*******************99776..7******************************976 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00016      0.31      19      45 ..       8      34 ..       3      35 .. 0.92
   2 ?    0.9   0.0      0.16   3.2e+02      28      40 ..      63      75 ..      58      81 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
                TT--HHHHHHHHTS-HHHHHHHHHHHH CS
  Sigma70_r4 19 eglTleEIgerlgiSrerVrqiekrAl 45
                ++lT   ++++ g+  e++r  e+++l
  CCG92385.1  8 RPLTIGKVANMAGVGVETIRFYERKGL 34
                79******************9999987 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.16
                HHHTS-HHHHHHH CS
  Sigma70_r4 28 erlgiSrerVrqi 40
                ++lg+S+  ++ +
  CCG92385.1 63 KELGLSLNEIKEL 75
                5566665555544 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0002      0.39       2      29 ..      10      37 ..       9      56 .. 0.80
   2 ?    0.4   0.0      0.39   7.7e+02       9      22 ..      63      76 ..      62     111 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
      HTH_17  2 ltveEaAelLgvsrstvyrlirrgelpa 29
                lt+  +A++ gv++ t++ + r+g lp 
  CCG92385.1 10 LTIGKVANMAGVGVETIRFYERKGLLPK 37
                8*****************9999999975 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.39
      HTH_17  9 elLgvsrstvyrli 22
                + Lg+s + + +l+
  CCG92385.1 63 KELGLSLNEIKELL 76
                66777776666654 PP

>> SinI  Anti-repressor SinI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   7.4e-05      0.15       9      24 ..      59      74 ..      56      76 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.4e-05
                HHHHHHHT--SHHHHH CS
        SinI  9 ikEAkesGlskeEfRe 24
                ik Ake Gls +E++e
  CCG92385.1 59 IKRAKELGLSLNEIKE 74
                899***********98 PP

>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00011      0.23      11      35 ..      94     118 ..      85     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
   DASH_Dam1  11 sletLdknledLqqihesLsdfNeS 35 
                 ++e+L+k+++dL +i+esL+++  S
  CCG92385.1  94 KIEDLEKRIKDLRRIKESLETLANS 118
                 799*****************98776 PP

>> DUF1836  Domain of unknown function (DUF1836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0019       3.7      39      85 ..      25      77 ..       7      86 .. 0.81
   2 ?    2.8   0.1     0.057   1.1e+02      69      95 ..      97     123 ..      84     130 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0019
     DUF1836 39 minNYvKkkllekpek.....KkYskeqvarlilitilknv.lsieeikklLk 85
                +i  Y +k+ll+kp +     + Y+++ +  + +i+  k++ ls++eik+lL 
  CCG92385.1 25 TIRFYERKGLLPKPARsltgyRLYDQNALKTISFIKRAKELgLSLNEIKELLF 77
                56778888888888763222345****************987*******9985 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.057
     DUF1836  69 tilknvlsieeikklLklllksiekee 95 
                 +  k + ++  ik+ L++l +s +k+ 
  CCG92385.1  97 DLEKRIKDLRRIKESLETLANSCQKNR 123
                 344788899999999999999976654 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       5.5   1.1e+04      29      40 ..      63      74 ..      59      75 .. 0.55
   2 ?   11.2   2.4   0.00014      0.28      62      98 ..      86     122 ..      80     126 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.5
                 HHHHHHHHHHHH CS
  Prefoldin_2 29 kelelvleelel 40
                 kel l l+e+++
   CCG92385.1 63 KELGLSLNEIKE 74
                 555555556554 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00014
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  62 evkeeLeerketlekeiktlekqleklekeleelkee 98 
                   v++++  ++e+lek+ik l + +e+le+  +  +++
   CCG92385.1  86 RVLQKVMLKIEDLEKRIKDLRRIKESLETLANSCQKN 122
                  4556666666666666666666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1105  (0.061632); expected 358.6 (0.02)
Passed bias filter:                      743  (0.0414412); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 890.67
//
Query:       CCG92386.1  [L=192]
Description: Soluble inorganic pyrophosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-52  175.3   0.0    8.8e-52  175.1   0.0    1.0  1  Pyrophosphatase  Inorganic pyrophosphatase


Domain annotation for each model (and alignments):
>> Pyrophosphatase  Inorganic pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.1   0.0   4.9e-56   8.8e-52       1     159 [.      32     183 ..      32     184 .. 0.98

  Alignments for each domain:
  == domain 1  score: 175.1 bits;  conditional E-value: 4.9e-56
                      EEEEE-TTCSEEEEEETTTTEEEEEEE-SSSB-BSSEEEEETT--BTCCBEETSSSEEEEEESSS---TTEEEEEEEEEEEEEEETTEEEEEEE CS
  Pyrophosphatase   1 vvvEiprgsnaKyeidkeegklrldrvlftskgypanYGfipqTledtelkGDgDPlDvlvlgeeplspgevvevkvlGvlamiDegetDdKii 94 
                      +v+E+++gs++Kye+dke+g lrldrvl++++ ypanYGfipqTl++     D+DPlDvlvlg+ep+ p+++v+++ +G++ m+D+g+ D+Ki+
       CCG92386.1  32 AVIEVSKGSSNKYELDKETGLLRLDRVLYSAVYYPANYGFIPQTLAE-----DKDPLDVLVLGDEPVLPMTLVHARTIGLMVMEDQGQLDHKIV 120
                      69*********************************************.....****************************************** PP

                      EEETTSGGGTT-SSGGGSTHHHHHHHHHHHHHTTTTSCCT-SEEEEEEEEHHHHHHHHHHHHHHH CS
  Pyrophosphatase  95 avpvkdprlkkindiedlpgllleeiehfFetykdlegkkknvkveewkdkeeAekvieeahery 159
                      +v ++dp+++++ndi++lp + l+ i++fFe+yk+le+  k+v ve++   +eA  +iee+ +ry
       CCG92386.1 121 CVLTSDPEYSHLNDIHELPIHKLRVIRRFFEDYKALEH--KKVVVEDFLPSKEAFPIIEESLQRY 183
                      *************************************4..5799******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1303.06
//
Query:       CCG92387.1  [L=63]
Description: hypothetical protein MFUM_690033 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 505.47
//
Query:       CCG92388.1  [L=156]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-51  172.1   0.0    8.5e-51  171.1   0.0    1.4  2  DUF269    Protein of unknown function, DUF269
  ------ inclusion threshold ------
      0.031   13.7   0.0       0.05   13.0   0.0    1.3  1  TilS_C    TilS substrate C-terminal domain


Domain annotation for each model (and alignments):
>> DUF269  Protein of unknown function, DUF269
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.56     5e+03       3      16 ..       6      19 ..       5      27 .. 0.76
   2 !  171.1   0.0   9.5e-55   8.5e-51       1     121 []      33     153 ..      33     153 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.56
                TS-HHHHHGGGB-- CS
      DUF269  3 kksdeellkpfivt 16
                +k d+el+k+f+ +
  CCG92388.1  6 EKIDAELIKEFLTE 19
                56789999999865 PP

  == domain 2  score: 171.1 bits;  conditional E-value: 9.5e-55
                 TTTS-HHHHHGGGB--HHHHCCS-SSSS--HHHHHHHHHHHHHHHHHHHHHHS---EEEEEE-TTS-EEEEEEETTEEEEEEEE-SGGG--BSSHHHHH CS
      DUF269   1 yekksdeellkpfivtkekkreipiigdvdpetllrielfynavalaiEketgllaspviklsheGfGrvlliagrlvvvsktlrdvhrFgFeslekla 99 
                 +e+k++eellk++i++++k++eipiigd+dp++l+rielf+naval+iEk+tg+l+ p+++++heGfGrv+l+ grlvv++ktlrdvhrFg+ slekl 
  CCG92388.1  33 WEGKKNEELLKDYIIDAQKRKEIPIIGDPDPDILWRIELFFNAVALTIEKKTGVLVVPMMSMHHEGFGRVVLFGGRLVVINKTLRDVHRFGYPSLEKLG 131
                 99************************************************************************************************* PP

                 HHHHHHHHHHHHHHHH-HHHHT CS
      DUF269 100 eegeklvekaveliekypevak 121
                 e+g+k+ + ++e+i+++pe a+
  CCG92388.1 132 ETGAKYATLGIEMISRFPEAAR 153
                 *******************986 PP

>> TilS_C  TilS substrate C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.6e-06      0.05      21      70 ..      36      86 ..      28      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.6e-06
                EEHHHHHHHCT--HHHCCCSEEEEETT.EEEEETTTEEBCCCB-SSSSS-E CS
      TilS_C 21 rkLKklfqeagvPpwlRdriPLlfygd.elvavaglgvsaafsaqkkeagl 70
                +k  +l++++ + +++R++iP++ + d  +++ ++l+ +a   + +k++g+
  CCG92388.1 36 KKNEELLKDYIIDAQKRKEIPIIGDPDpDILWRIELFFNAVALTIEKKTGV 86
                5566899******************777*********99988888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1159.15
//
Query:       CCG92389.1  [L=132]
Description: Protein nifX [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-18   66.7   0.0    2.1e-18   66.4   0.0    1.1  1  Nitro_FeMo-Co  Dinitrogenase iron-molybdenum cofactor


Domain annotation for each model (and alignments):
>> Nitro_FeMo-Co  Dinitrogenase iron-molybdenum cofactor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   1.2e-22   2.1e-18       3      94 ..      11     104 ..       9     105 .. 0.91

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 1.2e-22
                    SCB-STCCC-SEEEEEEESSSCEEEEEEE.E.GCCCTSSCSSTHHHHHHHH.TT-SEEEESSSCHHHHHHHCTTTSEEEES.-SSBHHHHHHHHH CS
  Nitro_FeMo-Co   3 srvdqhFGrapyFaiyeveegevkivenr.veeaadaegggggklaqllae.egvdvvivgkiGpralakleaagievykg.aggtveealkevl 94 
                    +rvd+hFG a+++aiyev++++++ +++  ++ +   e g+++kl+  l++ +++++++v++iG++ +a++ a+gi+++k    ++++++l +++
     CCG92389.1  11 NRVDAHFGWAKNIAIYEVSQDGYQHLQTVsFDGEL-KEDGNEDKLEPKLEAiKDCSILYVAAIGGSGAARVVAKGIHPIKSnNCEPIKDILVKLQ 104
                    79***************************544444.5559****************************************99********99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 937.88
//
Query:       CCG92390.1  [L=447]
Description: Nitrogenase iron-molybdenum cofactor biosynthesis protein nifN [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.6e-112  376.2   0.0   1.8e-112  376.0   0.0    1.0  1  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.25   11.4   0.0    1.4  1  Diphtheria_T    Diphtheria toxin, T domain


Domain annotation for each model (and alignments):
>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.0   0.0  2.1e-116  1.8e-112       1     398 [.      19     425 ..      19     426 .. 0.98

  Alignments for each domain:
  == domain 1  score: 376.0 bits;  conditional E-value: 2.1e-116
                     -HHHHHHHHHTTBTTEEEEEES-HHHHHCCCCHHHCHHSS-HS-EEEE--HHHHSSSSHHHHHHHHHHHHHHC-TSEEEEEE-HHHHHTTTTHHH CS
  Oxidored_nitro   1 CaplGAalvllgikdalplvhGpqGCatyaralltrhfrepiplastdltekdavfGgeekLkeaikeivkrykpkaIgVittClteliGdDiea 95 
                     ++p+G+al+++gi +++p++hG+qGC+++   l+ rhfre ipl++t+++e+++++Gg e++++ai +i+kr kp +Ig+++t+lte+ GdD+e+
      CCG92390.1  19 SQPIGGALAFMGINRSMPVLHGSQGCTAFGLVLFVRHFREMIPLQTTAMNEVTTIMGGLENIEQAIVNIYKRAKPALIGICSTGLTETKGDDVES 113
                     79********************************************************************************************* PP

                     HHHHHHHHHTS...SEEEEEE--TTSSSHHHHHHHHHHHHHHHCTT-TT---SSEEEEEEETTCGHGHHHHHHHHHHHHTE.............. CS
  Oxidored_nitro  96 vareaeeelge...ipvipvstpgfggsqseGydaalealvrklvgkkgekeprkvnilgeynlgpgdlrelkelleklGl.............. 173
                      ++ ++++++e    ++++vstp+f+g + +G+ +a+ ++++ lv+++ e+ ++++nil++++l+++d++e+ke++e++Gl              
      CCG92390.1 114 YLKIVRQRHPEvedCQLVYVSTPDFVGAFQDGWGKAVSKMIEVLVEASSETVKGQINILPGSHLSAADIEEIKEMVEDFGLraiilpdisgsldg 208
                     *********************************************************************************************** PP

                     ....EEEEEECTSB-HHHHGGGGG-SEEEEESHHCHHHHHHHHHHHH---EEEEE-SSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH CS
  Oxidored_nitro 174 ....evnavftggtsleelraagraklnlvlcprsanyaaelleekfgvpyiklvspiGleatdaflrelakllgkevaperiaeerarlldala 264
                         ++ +++ ggt+le+l+++g++++++++++++++ aa +le k+gvp++ ++ ++Gl+++d f+++l+ +++k+v p++++++r++l+da++
      CCG92390.1 209 hvpeDFTPTTIGGTPLEKLKEMGKSEVTIAIGEQMRA-AAMALEIKTGVPFFIFERLTGLASVDLFIERLSIIAQKPV-PNKYRRQRSQLVDAML 301
                     ***********************************99.****************************************.**************** PP

                     HHHHHHTT-EEEEECSSHHHHHHHHHHHHHT-EEEEEEESSS-HHHHHHHHHHS.TT.SEEEES.CHHHHHHHHHHHT-SEEEE-CCHHHHHHHT CS
  Oxidored_nitro 265 dyheylagkrvaiygdpdrvvalarllkelGmevvaagtetahrddeerlkaeleegepeviddadleeleelikelkpdlllggskeryiaekl 359
                     d+++y++g  +a+ ++pd+++a+  +l e+G+++ +a+t+t+ + +   +++      + v ++ dle+le +  +++ dl+l++s++r ++++l
      CCG92390.1 302 DCQFYFGGLSIALGAEPDLLWAIGNFLVEMGAKITVAITTTE-SVLLPNMPC------DTVTIG-DLEDLETM--AKGTDLILTHSHGRGASRRL 386
                     *****************************************9.666779**9......689999.******75..5679**************** PP

                     T--EEE-TS-ECCTTTCSS---SHHHHHHHHHHHHHHHH CS
  Oxidored_nitro 360 giplvrvgfPildrhgyargpyvGYeGalnllddianal 398
                     gipl r+g P++dr+g+a+++ vGY+G+ n+l++i+n l
      CCG92390.1 387 GIPLYRIGLPMFDRVGAAHRLSVGYRGSRNILFEITNLL 425
                     ************************************987 PP

>> Diphtheria_T  Diphtheria toxin, T domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.7e-05      0.25      55     111 ..     119     175 ..     100     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.7e-05
                   HCTSGGGHHHHHHTSS-GGGSHHHHHHHHHHHHHH--HHHHT-HHHHHHHHCT-S-C CS
  Diphtheria_T  55 alehpelselktvtgtnpvfaganyaawavnvaqvidsetadnlekttaalsilpgi 111
                      hpe+ + + v  + p f ga    w   v+++i+       e     + ilpg 
    CCG92390.1 119 RQRHPEVEDCQLVYVSTPDFVGAFQDGWGKAVSKMIEVLVEASSETVKGQINILPGS 175
                   457***********************************999999*99********84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3351.74
//
Query:       CCG92391.1  [L=459]
Description: Nitrogenase iron-molybdenum cofactor biosynthesis protein nifE [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.8e-112  373.9   0.1   8.9e-112  373.7   0.1    1.0  1  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
     0.0035   17.7   0.1     0.0065   16.9   0.1    1.4  1  Radical_SAM     Radical SAM superfamily
  ------ inclusion threshold ------
      0.051   12.9   0.2      0.093   12.1   0.2    1.4  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase


Domain annotation for each model (and alignments):
>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  373.7   0.1  1.5e-115  8.9e-112       1     398 [.      45     444 ..      45     445 .. 0.96

  Alignments for each domain:
  == domain 1  score: 373.7 bits;  conditional E-value: 1.5e-115
                     -HHHHHHHHHTTBTTEEEEEES-HHHHHCCCCHHHCHHSS-H...S-EEEE--HHHHSSSSHHHHHHHHHHHHHHC-TSEEEEEE-HHHHHTTTT CS
  Oxidored_nitro   1 CaplGAalvllgikdalplvhGpqGCatyaralltrhfrepi...plastdltekdavfGgeekLkeaikeivkrykpkaIgVittClteliGdD 92 
                     Ca+ GA+++l++i+d+++lvhGp+ C   +++ ++++++        ++td++e d+++Gge++L +aike+v++y+p a++V++tC ++liGdD
      CCG92391.1  45 CAFDGAKIALQPITDVVHLVHGPIACEGNSWDNRGSKSSGSKlyrLGFTTDINEMDVIYGGEKRLFKAIKEVVEKYRPPAVFVYNTCIPALIGDD 139
                     ***************************************5444466************************************************* PP

                     HHHHHHHHHHHHTSSEEEEEE--TTSSSHHHHHHHHHHHHHHHCTT..-TT---SSEEEEEEETTCGHGHHHHHHHHHHHHTEEEEEEECTSB-H CS
  Oxidored_nitro  93 ieavareaeeelgeipvipvstpgfggsqseGydaalealvrklvg..kkgekeprkvnilgeynlgpgdlrelkelleklGlevnavftggtsl 185
                     +eav+++a+e+ g+ pv+p+++pgf+gs++ G + a eal+++++g  +++ + p ++ni+geynl+ g+l+++k l+++lG+++ a+++g++++
      CCG92391.1 140 LEAVCKAAKEKFGI-PVVPIQSPGFAGSKNLGNKLAGEALLDYVIGteEPEVTTPYDINIIGEYNLA-GELWQVKPLFDQLGIRIAACISGDSRY 232
                     ************99.******************************94333344455***********.*************************** PP

                     HHHGGGGG-SEEEEESHHCHHHHHHHHHHHH---EEEEE-SSSHHHHHHHHHHHHHHHT........CHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
  Oxidored_nitro 186 eelraagraklnlvlcprsanyaaelleekfgvpyiklvspiGleatdaflrelakllg........kevaperiaeerarlldaladyheylag 272
                     +e+++++ra++ +++c++++ ++a+++ee++g+p+++ +s++G+ ++++ lr++a ll          ++++  i+ e+++++++l+ y+++l+g
      CCG92391.1 233 KEIASCHRARAAMLVCSKAMINIARKMEERYGIPFFE-GSFYGISDMSEALRNIATLLVqrgaeeelLAKTEILIRHEEQKAWRKLETYKKRLSG 326
                     ******************9999***************.*********************999999995566889999****************** PP

                     -EEEEECSSHHHHHHHHHHHHHT-EEEEEEESSS-HHHHHHHHHHS.TT.SEEEES.CHHHHHHHHHHHT-SEEEE-CCHHHHHHHTT--EEE-T CS
  Oxidored_nitro 273 krvaiygdpdrvvalarllkelGmevvaagtetahrddeerlkaeleegepeviddadleeleelikelkpdlllggskeryiaeklgiplvrvg 367
                     krv++++++ ++++++++l+e+Gm vv++++++++++d++r+k++++e++ ++i++   +e+ +++k+ ++d+ll+g + +++a k         
      CCG92391.1 327 KRVLLITGGVKSWSVVSALQEVGMVVVGTSVKKSTEEDKQRIKKIMGEEA-HMIEEMTPKEMYKMLKDAQADILLSGGRSQFVALKA-------K 413
                     ************************************************95.9***********************************.......* PP

                     S-ECCTTTCSS---SHHHHHHHHHHHHHHHH CS
  Oxidored_nitro 368 fPildrhgyargpyvGYeGalnllddianal 398
                     +P+ld ++++++ y+GYeG++nl+d+i ++l
      CCG92391.1 414 VPWLDINQERHHAYAGYEGMVNLVDQIDRTL 444
                     ***************************9998 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.1e-06    0.0065      33     125 ..     280     377 ..     269     397 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
                  HHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC..CCTEEEEEEECSSCHGHHHHHHHHHTT-SEEEEEEBSSSHH...HHHHHHT.CT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxx.xx RF
  Radical_SAM  33 eileevkelkaekgvkevilgggepllypdfvellerlakla..vpgiritvetngtlpdeeklerllelgvdrvslgleaadde...kvlklmn.rg 124
                  e l+ +  l + +g++e +l   e l + ++++++++l   +   +g r+ ++t g++  + ++ +l e g+ +v  +++  ++e   +++k+m+   
   CCG92391.1 280 EALRNIATLLVQRGAEEELLAKTEILIRHEEQKAWRKLETYKkrLSGKRVLLITGGVKS-WSVVSALQEVGMVVVGTSVKKSTEEdkqRIKKIMGeEA 376
                  44444444546677888888899999999999999999998899**************8.*************************9998888886444 PP

                  S CS
                  x RF
  Radical_SAM 125 h 125
                  h
   CCG92391.1 377 H 377
                  4 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   1.6e-05     0.093      19      76 ..     310     366 ..     297     384 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.6e-05
                   HTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHH CS
  2-Hacid_dh_C  19 regewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeee 76 
                   +++ w ++ ++  k+lsgk+v +i  G    +v   l+++gm v++++++k++ee+++
    CCG92391.1 310 EQKAW-RKLETYKKRLSGKRVLLITGGVKSWSVVSALQEVGMVVVGTSVKKSTEEDKQ 366
                   45667.9999999*************************************98776322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3106.22
//
Query:       CCG92392.1  [L=526]
Description: Nitrogenase molybdenum-iron protein beta chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-121  406.2   0.0   1.4e-121  406.0   0.0    1.0  1  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
    1.5e-25   89.1   5.3    2.7e-25   88.4   5.3    1.4  1  DUF3364         Domain of unknown function (DUF3364)


Domain annotation for each model (and alignments):
>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.0   0.0  1.6e-125  1.4e-121       1     396 [.      77     502 ..      77     505 .. 0.96

  Alignments for each domain:
  == domain 1  score: 406.0 bits;  conditional E-value: 1.6e-125
                     -HHHHHHHHHTTBTTEEEEEES-HHHHHCCCCHHHCHHSS-HS-EEEE--HHHHSSSSHHHHHHHHHHHHHHC-TSEEEEEE-HHHHHTTTTHHH CS
  Oxidored_nitro   1 CaplGAalvllgikdalplvhGpqGCatyaralltrhfrepiplastdltekdavfGgeekLkeaikeivkrykpkaIgVittClteliGdDiea 95 
                     C+plGA +++ g++++lp+vhG+qGC +y+r +++rhf+ep  ++s+++te++avfGg +++ +++ + ++ ykpk+I+V ttC++e+iGdD++a
      CCG92392.1  77 CQPLGAIFAAVGFEGTLPFVHGSQGCVAYFRSHFSRHFKEPSSCVSSSMTEDAAVFGGLNNMIDGLANSFSLYKPKMIAVSTTCMAEVIGDDLNA 171
                     *********************************************************************************************** PP

                     HHHHHHHHHTS...SEEEEEE--TTSSSHHHHHHHHHHHHHHHCTT......-TT---SS.......EEEEEEETTCGH.GHHHHHHHHHHHHTE CS
  Oxidored_nitro  96 vareaeeelge...ipvipvstpgfggsqseGydaalealvrklvg......kkgekepr.......kvnilgeynlgp.gdlrelkelleklGl 173
                     ++++a+++ ++    +v +++tp+f+gs+++Gyd++++ ++ ++ +      +      +       ++ni+g++   + g++relk++l+ +G+
      CCG92392.1 172 FIKNARDKGSIpqdFDVPFAHTPSFVGSHITGYDNMMKGILSYFWDgkagtvP------PlerkpvdRINIIGGFDPYTvGNMRELKRILSLMGV 260
                     ********999*********************************985555441......34555667********99977*************** PP

                     ..................EEEEEECTSB-HHHHGGGGG-SEEEEESHHCHHHHHHHHHHHH---EEEEE-SSSHHHHHHHHHHHHHHHTCHHHHH CS
  Oxidored_nitro 174 ..................evnavftggtsleelraagraklnlvlcprsanyaaelleekfgvpyiklvspiGleatdaflrelakllgkevape 250
                                       ++++ + ggt+l+e+ +a  +k+++ ++ + ++++  ++ ek g + + ++ piG++atdafl+e++kl+gk++ pe
      CCG92392.1 261 nylilsdnsdvwdtptdgTFRM-YDGGTKLAEISDAIHSKATVSIQGFCTEKTISYINEK-GQQTVVFHCPIGVRATDAFLMEISKLTGKSI-PE 352
                     ****************955555.56***********************************.8888888************************.** PP

                     HHHHHHHHHHHHHHHHHHHHTT-EEEEECSSHHHHHHHHHHHHHT-EEEEEEESSS-HHHHHHHHHHS.TT.....SEEEES.CHHHHHHHHHHH CS
  Oxidored_nitro 251 riaeerarlldaladyheylagkrvaiygdpdrvvalarllkelGmevvaagtetahrddeerlkaeleeg....epeviddadleeleelikel 341
                     ++++er+rl+da+ad  ++++gkr+a++gdpd+ ++l+ +l elG+e+++++++++ +++ee++ka le++    +++v+ ++dl+++++l+ ++
      CCG92392.1 353 ELEKERGRLVDAIADSNAHIHGKRFALFGDPDMTLGLTGFLLELGAEPIHVLCTNGGKEWEEKAKALLEASpfgkNCNVYAGKDLWHMRSLLFTE 447
                     **********************************************************************9****9******************* PP

                     T-SEEEE-CCHHHHHHHTT--EEE-TS-ECCTTTCSS---SHHHHHHHHHHHHHH CS
  Oxidored_nitro 342 kpdlllggskeryiaeklgiplvrvgfPildrhgyargpyvGYeGalnllddian 396
                     ++d+l+g+++++y+++++g+pl+r+gfPi+drh+++r+p++GY+G ln l +i  
      CCG92392.1 448 PVDFLIGNTYAKYLERDTGTPLIRIGFPIFDRHHHHRYPIWGYQGGLNVLVWILD 502
                     ************************************************9988875 PP

>> DUF3364  Domain of unknown function (DUF3364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   5.3     3e-29   2.7e-25       2      56 .]       9      63 ..       8      63 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 3e-29
                ---TTS---HHHHTTSHHHHHHHHHHHH.TT----HHHHHHHHHHHTSHHHHHHH CS
     DUF3364  2 sqnadkildhseLFrepeYqellenKkeefEeahsaekvaevaeWTktwEYrEkN 56
                sqnad++ldh++LFr+p+Y +++e+Kk efE++++ae+v++++eWTktwEYrEkN
  CCG92392.1  9 SQNADNVLDHFNLFRQPQYLQMFEKKKCEFENPAPAEEVEKIREWTKTWEYREKN 63
                7*****************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3396.63
//
Query:       CCG92393.1  [L=491]
Description: Nitrogenase molybdenum-iron protein alpha chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.3e-110  369.1   0.0   2.7e-110  368.9   0.0    1.0  1  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase


Domain annotation for each model (and alignments):
>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.9   0.0  1.5e-114  2.7e-110       1     398 [.      68     475 ..      68     476 .. 0.95

  Alignments for each domain:
  == domain 1  score: 368.9 bits;  conditional E-value: 1.5e-114
                     -HHHHHH.HHHTTBTTEEEEEES-HHHHHCCCCHHHCHHS......S-H.S-EEEE--HHHHSSSSHHHHHHHHHHHHHHC-T..SEEEEEE-HH CS
  Oxidored_nitro   1 CaplGAa.lvllgikdalplvhGpqGCatyaralltrhfr......epi.plastdltekdavfGgeekLkeaikeivkrykp..kaIgVittCl 85 
                     Ca++G++ +v ++ikd++++ hGp+GC +y++a +++++       + +   ++td++e+d+vfGg++kL++a++e+ + + p  k I + + C+
      CCG92393.1  68 CAYAGSKgVVWGPIKDMIHISHGPVGCGQYSWASRRNYYIgttgvdTFVtMQFTTDFQERDIVFGGDKKLAKALEELQELF-PlnKGITIQSECP 161
                     ****************************************887774333679*****************************.66*********** PP

                     HHHTTTTHHHHHHHHHHHHTSSEEEEEE--TT.SSSHHHHHHHHHHHHHHHCTT-TT---SS......EEEEEEETTCGHGHHHHHHHHHHHHTE CS
  Oxidored_nitro  86 teliGdDieavareaeeelgeipvipvstpgf.ggsqseGydaalealvrklvgkkgekepr......kvnilgeynlgpgdlrelkelleklGl 173
                      +liGdDieava++ +++ g   ++pv+++gf g+sqs G+++a++++ + +++k  +k+++      +v+i+g+yn+g gd +  + lle++Gl
      CCG92393.1 162 IGLIGDDIEAVAKAKSKDFGGKTIVPVRCEGFrGVSQSLGHHIANDSIRDWVLEKMAGKKEEfvstpyDVAIIGDYNIG-GDSWASRILLEEMGL 255
                     ********************9*********************************77777777999999***********.*************** PP

                     EEEEEECTSB-HHHHGGGGG-SEEEEESHHCHHHHHHHHHHHH---EEEEE-SSSHHHHHHHHHHHHHHHT...CHHHHHHHHHHHHHHHHHHHH CS
  Oxidored_nitro 174 evnavftggtsleelraagraklnlvlcprsanyaaelleekfgvpyiklvspiGleatdaflrelakllg...kevaperiaeerarlldalad 265
                     +v+a  +g+ sl+el+++++ kln+++c rs+ny+ +++eekfg+p+++  +++G ++++++lr++a +++   ke   e+++++ + ++da+++
      CCG92393.1 256 RVVAQWSGDGSLKELERTPKVKLNILHCYRSMNYISRYMEEKFGIPWVE-YNFFGPTKIAESLRKIASFFDdkiKEG-AEKVIAKYQPMVDAVIA 348
                     *************************************************.*********************985444.67777777788888777 PP

                     .HHHHHTT-EEEEECSSHHHHHHHHHHHHHT-EEEEEEESSS-HHHHHHHHHHS.TT.SEEEES.CHHHHHHHHHHHT-SEEEE-CCHHHHHHHT CS
  Oxidored_nitro 266 .yheylagkrvaiygdpdrvvalarllkelGmevvaagtetahrddeerlkaeleegepeviddadleeleelikelkpdlllggskeryiaekl 359
                      y+++l+gk+v++++++ r  +++ + ++lGmev+++g+e++h+dd++r    +++g+  ++dd+  +e+e+++++l+pdl+ +g+ke+y+++k+
      CCG92393.1 349 kYRPRLEGKKVMLFVGGLRPRHVIGAYEDLGMEVIGTGYEFGHNDDYQRTTHYVKDGT-LIYDDVTGFEFEKFVEALQPDLVGSGIKEKYVFQKM 442
                     7********************************************************6.************************************ PP

                     T--EEE-TS-ECCTTTCS.S---SHHHHHHHHHHHHHHHH CS
  Oxidored_nitro 360 giplvrvgfPildrhgya.rgpyvGYeGalnllddianal 398
                            gfP+ ++h+ + +gpy+GY+G+  +++d+  a+
      CCG92393.1 443 -------GFPFRQMHSWDySGPYHGYDGFAIFARDMDMAI 475
                     .......****************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3573.65
//
Query:       CCG92394.1  [L=297]
Description: Nitrogenase iron protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.5e-138  460.8   1.3   1.7e-138  460.6   1.3    1.0  1  Fer4_NifH      4Fe-4S iron sulfur cluster binding proteins, N
    1.2e-10   41.6   0.0      2e-10   40.8   0.0    1.3  1  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain
    1.6e-10   41.2   0.1    8.3e-10   38.9   0.0    2.0  2  AAA_31         AAA domain
    1.6e-07   30.8   0.0    3.8e-07   29.6   0.0    1.6  2  ArsA_ATPase    Anion-transporting ATPase
      7e-06   25.7   0.0    0.00036   20.1   0.0    2.2  2  ParA           NUBPL iron-transfer P-loop NTPase
     0.0055   16.2   0.4        1.1    8.7   0.0    2.1  2  CBP_BcsQ       Cellulose biosynthesis protein BcsQ
      0.008   15.2   0.0      0.017   14.1   0.0    1.5  1  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me
     0.0086   15.4   0.0      0.017   14.4   0.0    1.5  1  MipZ           ATPase MipZ
  ------ inclusion threshold ------
      0.035   13.8   0.0      0.066   12.9   0.0    1.4  1  AAA_24         AAA domain
       0.19   10.6   0.1       0.33    9.8   0.1    1.3  1  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-


Domain annotation for each model (and alignments):
>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.6   1.3  9.4e-142  1.7e-138       1     271 []       5     276 ..       5     276 .. 0.99

  Alignments for each domain:
  == domain 1  score: 460.6 bits;  conditional E-value: 9.4e-142
   Fer4_NifH   1 rkiaiyGkGGiGksttsqnlsaalaemgkkvlivGCDPkaDstrlllggkaqetvldtlrekgavedvkvedvvkkGyggvkcvesGGPepGvGCaGrg 99 
                 r+ia+yGkGGiGksttsqn++aalaemg+++livGCDPkaDstrl+l++kaq+t+l++++++g+ved+++edv+k Gy++++cvesGGPepGvGCaGrg
  CCG92394.1   5 RQIAFYGKGGIGKSTTSQNTLAALAEMGQRILIVGCDPKADSTRLILHSKAQDTILHLAAQAGSVEDLEIEDVMKIGYRNIRCVESGGPEPGVGCAGRG 103
                 79************************************************************************************************* PP

   Fer4_NifH 100 vitaielleelgayddlDfvlyDvLGDvvCGGfalPiredkaqevyivtsgelmalyaanniakgiekyaksggvrlgGliinsrkvddereliekfae 198
                 vit+i++lee+gay+d+D+v+yDvLGDvvCGGfa+Pire+kaqe+yiv+sge+ma+yaanni+kgi kya+sggvrlgGli+n+rk+d+e +l++++a+
  CCG92394.1 104 VITSINFLEENGAYEDIDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAMYAANNICKGILKYANSGGVRLGGLICNERKTDREYDLADALAK 202
                 *************************************************************************************************** PP

   Fer4_NifH 199 elgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrelarkilenk.klviPkplsedeLeelleefela 271
                 +lg+k++++vPrd++v++aelr++tvieyap+s+qa+eyr+la+ki+en  k+viPkp+++deLe+ll+ef+++
  CCG92394.1 203 RLGSKLIHFVPRDNVVQHAELRRMTVIEYAPDSKQADEYRALAKKIHENAgKGVIPKPVTMDELEDLLMEFGIM 276
                 ************************************************9889*******************986 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   1.1e-13     2e-10       5     127 ..      10     227 ..       7     228 .. 0.90

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1.1e-13
                 ESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
        CbiA   5 stkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep................................................. 54 
                  +kGG GK+t++ n ++ala+ g r+l v +Dp a +++++  ++ +                                                    
  CCG92394.1  10 YGKGGIGKSTTSQNTLAALAEMGQRILIVGCDPKADSTRLILHSKAQDTIlhlaaqagsvedleiedvmkigyrnircvesggpepgvgcagrgvitsi 108
                 69*************************************75555555555799999999999999********************************** PP

                 .................................................CCHCCCHHHHHHCHCHHHH...EEEEEEEEESS...-TTCHHHHHHHHHH CS
                 .................................................xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .................................................dlkrllellealgkkkall.lkiagvvlnrvdgeneetllkealeelkqr 103
                                                                   +    ++++ + k  +   +++ g++ n  + + +e  l +al++++  
  CCG92394.1 109 nfleengayedidyvsydvlgdvvcggfampirenkaqeiyivmsgemmAMYAANNICKGILKYANSGgVRLGGLICNERKTD-REYDLADALAKRL-- 204
                 **********************************************999888888888888877555599*********7766.5666888888877.. PP

                 CTS-EEEEEE--CCHCCCCHHTS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA 104 ygvpvlgviprdeavaeapargep 127
                  g ++++++prd  v  a+ r ++
  CCG92394.1 205 -GSKLIHFVPRDNVVQHAELRRMT 227
                 .***********999988888765 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   4.6e-13   8.3e-10       4      76 ..       7      76 ..       4      87 .. 0.82
   2 ?   -0.6   0.0      0.58     1e+03      16     100 ..     190     273 ..     188     290 .. 0.51

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 4.6e-13
      AAA_31  4 IaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekneiektlyevlieeknikeaiikt 76
                Ia++  KGG+GK+Tts n  aala++g+++L+v +Dp a +t  +   +++++ t++++ ++  +++++ i++
  CCG92394.1  7 IAFY-GKGGIGKSTTSQNTLAALAEMGQRILIVGCDPKADSTRLIL--HSKAQDTILHLAAQAGSVEDLEIED 76
                5554.5************************************9554..5667789999987777777776643 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.58
      AAA_31  16 TTtsvnlaaala.klgkkvLlvDlDpQanattglgiekneiektlyevlieeknike..aiiktkvenl..dlipssidLaeaeielvel 100
                 T   + la ala +lg k  l+ + p  n  +++++    +  t++e   ++k+ +e  a+ k+ +en    +ip  + + e+e+ l+e+
  CCG92394.1 190 TDREYDLADALAkRLGSK--LIHFVPRDNVVQHAEL----RRMTVIEYAPDSKQADEyrALAKKIHENAgkGVIPKPVTMDELEDLLMEF 273
                 555566666666445555..3455555555554444....22344444322222222003333334444557777777777777777665 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   2.1e-10   3.8e-07       2      42 ..       5      46 ..       4      80 .. 0.85
   2 ?   -2.4   0.0       1.2   2.1e+03     204     233 ..     143     172 ..     139     204 .. 0.69

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.1e-10
                 EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-ST.TTH CS
  ArsA_ATPase  2 kvilvgGKGGVGKttvsaatavklsekgkkvllistDP.Ahs 42
                 + i + GKGG+GK+t s  t + l+e+g+++l++  DP A s
   CCG92394.1  5 RQIAFYGKGGIGKSTTSQNTLAALAEMGQRILIVGCDPkADS 46
                 67999*********************************5555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
                  TTTEEEEEEEESSHHHHHHHHHHHHHHHHT CS
  ArsA_ATPase 204 pertsfrlVvipEklslkEteRaikeLkky 233
                  ++   + +V+  E ++++  +  +k + ky
   CCG92394.1 143 NKAQEIYIVMSGEMMAMYAANNICKGILKY 172
                  566678899999999999887777666655 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     2e-07   0.00036      11      54 ..      11      54 ..       6      88 .. 0.82
   2 ?    3.3   0.0     0.026        46     192     245 ..     195     248 ..     180     249 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2e-07
        ParA 11 gKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgve 54
                gKGG+GKSt++ n  +aLa++g+++ ++  D    s   +l  +
  CCG92394.1 11 GKGGIGKSTTSQNTLAALAEMGQRILIVGCDPKADSTRLILHSK 54
                9************************9999997777666666555 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.026
        ParA 192 gggeklaeelgvpllgeipldpeireasdegkplvlkepeseaakaleeiaekv 245
                 + +++la++lg +l+  +p d+ +++a  +  ++++ +p+s++a++++++a+k+
  CCG92394.1 195 DLADALAKRLGSKLIHFVPRDNVVQHAELRRMTVIEYAPDSKQADEYRALAKKI 248
                 5678899**************99999999999999****************997 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1    0.0047       8.5       4      40 ..       7      42 ..       4      68 .. 0.81
   2 !    8.7   0.0    0.0006       1.1     195     231 ..     210     246 ..     186     248 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0047
    CBP_BcsQ  4 lalqGvRGGvGttsllaaLawalhelgesvlviDlsp 40
                +a+ G +GG+G+++ +     al e+g+++l++   p
  CCG92394.1  7 IAFYG-KGGIGKSTTSQNTLAALAEMGQRILIVGCDP 42
                55666.7*****999999999***********98766 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0006
    CBP_BcsQ 195 lvihrDealaEalaakqPlgeyrpdslaaeevktLan 231
                   + rD+ ++ a + +  + ey+pds  a e + La+
  CCG92394.1 210 HFVPRDNVVQHAELRRMTVIEYAPDSKQADEYRALAK 246
                 4577*******************************97 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   9.5e-06     0.017      32      71 ..       7      46 ..       3      56 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 9.5e-06
                EEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE------ CS
        MeaB 32 vGltGvPGaGkstlvealglelrrrGkrvavlavDPsspf 71
                + + G  G Gkst+ ++  + l++ G+r+ ++  DP +  
  CCG92394.1  7 IAFYGKGGIGKSTTSQNTLAALAEMGQRILIVGCDPKADS 46
                7788999*****************************8765 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   9.5e-06     0.017       9      45 ..      12      48 ..       7      83 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.5e-06
                STTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHH CS
        MipZ  9 kGGsGksttavhvavaLlkkGarvaaidldlrqrtla 45
                kGG Gkstt+     aL+++G+r+  +  d +  +  
  CCG92394.1 12 KGGIGKSTTSQNTLAALAEMGQRILIVGCDPKADSTR 48
                9***********************9999998776654 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.7e-05     0.066       4      34 ..       6      43 ..       5      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.7e-05
      AAA_24  4 kiliyGpsgiGKTtlakel.......gpkplfidtekG 34
                +i+ yG+ giGK+t+  +        g+++l++ ++  
  CCG92394.1  6 QIAFYGKGGIGKSTTSQNTlaalaemGQRILIVGCDPK 43
                5899***********99999999999999999999964 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00018      0.33      16      68 ..       5      60 ..       2      61 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00018
  TrwB_AAD_bind 16 qhilivGttGsGKtqalekllrairargdraivl..DltGafvsr.fydegkdill 68
                   ++i++ G  G GK+++ ++ l+a+ + g+r++++  D++ + ++   +++ +d++l
     CCG92394.1  5 RQIAFYGKGGIGKSTTSQNTLAALAEMGQRILIVgcDPKADSTRLiLHSKAQDTIL 60
                   689999*************************9964488877776513344456665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2185.51
//
Query:       CCG92395.1  [L=386]
Description: Homocitrate/citramalate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-70  237.0   0.0    3.2e-70  236.7   0.0    1.1  1  HMGL-like  HMGL-like
  ------ inclusion threshold ------
        0.1   12.5   0.0        0.3   10.9   0.0    1.7  2  DUF4032    Domain of unknown function (DUF4032)


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.7   0.0   3.5e-74   3.2e-70       2     260 ..       7     260 ..       6     264 .. 0.98

  Alignments for each domain:
  == domain 1  score: 236.7 bits;  conditional E-value: 3.5e-74
                 -EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B..--EE-SSHHHHHHHHH....TT-SEEEEEEES- CS
   HMGL-like   2 vkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkarilalvrarekdikaavealkgagakrvhvfiats 100
                 + + dttLRDGeq++++a+s ++k  iak L++ g++eiE+g p+ ++ ++e+  +i + + +ari+a+ r++e+d+ka  +     ga +v++ i+ s
  CCG92395.1   7 ILLADTTLRDGEQTPGVAFSPNQKDLIAKRLAQCGLREIEAGTPSIGKVEMEAFDKILSLGLSARITAWGRMTEEDLKAVKQ----SGASTVNLSIPLS 101
                 6689**************************************************************************9999....************* PP

                 HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-ETTT-BTTTBS--HHHHHHHHHHHHHHT-SEEEEEETTS---HHHHHHHHHHHHHHS-.GGGEEEEEB CS
   HMGL-like 101 elhlkaklkkdreevakkaeeavkaarslgkdvelsledasrtdleflaevveaaeeaGatriniaDtvGvltPneaaelisalkervkdkvilsvHcH 199
                 ++++++klk++r  v++k+++ v  a+++g +v+++ edasr+d +fl+e ve+ ++ Ga r++ aDtvG+l+P + +++is+lk+ ++  + l++H+H
  CCG92395.1 102 DIQISTKLKMTRSSVLEKIKKYVSKAKDMGLEVAMGGEDASRADEQFLMEAVEVSQQSGAFRFRYADTVGILDPIQTYKIISKLKKITP--MLLEFHGH 198
                 *****************************************************************************************..******** PP

                 -TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT.-B----HHHHHHH CS
   HMGL-like 200 ndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealg.vdtgldlqklrsi 260
                 +d+G+A+an++aA +aG+d ++ t  GlGeraGn +lee++  l  ++ vd g+dl+ l s+
  CCG92395.1 199 DDFGMATANSIAAWHAGVDSLSLTTCGLGERAGNGSLEEVAFFLSIREkVDCGIDLKALFSL 260
                 *********************************************9988********99875 PP

>> DUF4032  Domain of unknown function (DUF4032)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.49   4.4e+03      18      35 ..     118     135 ..     107     158 .. 0.72
   2 ?   10.9   0.0   3.3e-05       0.3      69     101 ..     335     367 ..     330     376 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.49
     DUF4032  18 yrieerirrlneLGFdve 35 
                  +i++ +++ +++G +v+
  CCG92395.1 118 EKIKKYVSKAKDMGLEVA 135
                 578888888888888875 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 3.3e-05
     DUF4032  69 GldveenQArrlLndlesyraelekeevdeevv 101
                 G+  +e+QArr+L++++ +  ++++++++ee++
  CCG92395.1 335 GIFLSEEQARRILDQIRDFAINNKRTPSKEELI 367
                 67789*****************99999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2689.42
//
Query:       CCG92396.1  [L=239]
Description: Phosphoadenosine phosphosulfate reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-46  158.2   0.0    2.6e-46  157.8   0.0    1.1  1  PAPS_reduct     Phosphoadenosine phosphosulfate reductase fam
  ------ inclusion threshold ------
      0.012   15.7   0.5        5.3    7.2   0.1    2.4  2  NYD-SP28_assoc  Sperm tail C-terminal domain


Domain annotation for each model (and alignments):
>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.8   0.0   2.9e-50   2.6e-46       2     173 ..      39     210 ..      38     211 .. 0.98

  Alignments for each domain:
  == domain 1  score: 157.8 bits;  conditional E-value: 2.9e-50
                  EEEE--SSCTCHHHHHHHHHHCTTHEEEEEE-STB-HHHHHHHHHHHHHTT-EEEEEE-SCHHHHHHHHHH-S-THHHC......HHHHHHTHHHHHH CS
  PAPS_reduct   2 lvvsvsgGkdslVllhLalkafkpvpvvfvdtghefpetiefvdeleeryglrlkvyepeeevaekinaekhgsslyee......aaeriaKveplkk 93 
                  +++s s+G++s+V+l+L+l++ +++pvv +dtg+ fpet++++d+l+e+++++lkvy+p  + a+ +++++   +l+e+      ++++i+Kvep+ +
   CCG92396.1  39 VILSSSFGAQSVVTLKLVLSVWPEIPVVVIDTGYLFPETYRYIDRLVEELKINLKVYRPALSPAWFEARYG---KLWEQgkegieKYNQIMKVEPMIR 133
                  789********************************************************************...9*********************** PP

                  HHHCTTECEEE----CCCTTTTTTSSSEEECTTT-SCEEE-CCCT--HHHHHHHHHHCT--B-CCCCTT-SS--BCTTB- CS
  PAPS_reduct  94 aLekldedalltGaRrdesksraklpiveidedfekslrvfPllnWteedvwqyilrenipynpLydqgfrsiGcvpctg 173
                   Le+ld+  +++G+Rr++s++r+++pi+    d     +++P+++Wt e++ ++i+++++p++pL ++g+ siG++++t+
   CCG92396.1 134 SLEELDAHCWISGLRREQSSTRKNIPILTWHWD---RAKLHPIADWTTEKINEFIYKHKLPMHPLAFEGYVSIGDIHTTS 210
                  ***************************999888...78***************************************997 PP

>> NYD-SP28_assoc  Sperm tail C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1   0.00059       5.3      20      40 ..       7      27 ..       3      33 .. 0.87
   2 ?    6.3   0.0    0.0012        10      15      33 ..     109     127 ..     103     132 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00059
  NYD-SP28_assoc 20 alekaLekYhevLteRaklie 40
                     l ++L++Y+++L+++ +l +
      CCG92396.1  7 ELFDSLQDYNRLLEKKDALER 27
                    6999***********998865 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0012
  NYD-SP28_assoc  15 lklWdalekaLekYhevLt 33 
                      klW++  +++ekY+++ +
      CCG92396.1 109 GKLWEQGKEGIEKYNQIMK 127
                     58**************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1800.42
//
Query:       CCG92397.1  [L=267]
Description: sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-45  154.0   0.0    4.8e-45  153.7   0.0    1.1  1  PAPS_reduct  Phosphoadenosine phosphosulfate reductase family


Domain annotation for each model (and alignments):
>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.7   0.0   2.7e-49   4.8e-45       2     174 .]      25     222 ..      24     222 .. 0.96

  Alignments for each domain:
  == domain 1  score: 153.7 bits;  conditional E-value: 2.7e-49
                  EEEE--SSCTCHHHHHHHHHHCTT...HEEEEEE-STB-HHHHHHHHHHHHHTT-EEEEEE-SCHHHHHHHHHH-S-THHHCHHHHHHTHHHHHHHHH CS
  PAPS_reduct   2 lvvsvsgGkdslVllhLalkafkp...vpvvfvdtghefpetiefvdeleeryglrlkvyepeeevaekinaekhgsslyeeaaeriaKveplkkaLe 96 
                  l++++s+Gkds Vll La kaf     +p++++dt +efp+++ef+   +e yg++l+v  ++e ++++i  ++h   ++++      K+++lk+aLe
   CCG92397.1  25 LAMLWSMGKDSNVLLWLAKKAFCGhipFPIIHIDTTYEFPQMLEFRSWAKEYYGFELIVKINQEAIERGISYKTHDPVTVTH----ELKTVALKQALE 118
                  79********************985445**********************************************98888888....89********** PP

                  CTTECEEE----CCCTTTTTTSSSEEECTTT-S......................CEEE-CCCT--HHHHHHHHHHCT--B-CCCCTT....-SS--B CS
  PAPS_reduct  97 kldedalltGaRrdesksraklpiveidedfek......................slrvfPllnWteedvwqyilrenipynpLydqg....frsiGc 168
                  +++ d l+tG+Rrde   rak+++++ +++  +                      ++r++Pll+Wte d+w yi+renip+ +Ly+ +    +rs+Gc
   CCG92397.1 119 EYKWDGLITGIRRDEDGVRAKERYFSPRNQSMEweyknqppefwnlflatlpnngHVRIQPLLDWTELDIWLYIKRENIPIPSLYFSKngkrYRSLGC 216
                  *****************************98889****************************************************988899****** PP

                  CTTB-S CS
  PAPS_reduct 169 vpctga 174
                  +p t++
   CCG92397.1 217 WPITHP 222
                  ****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1867.22
//
Query:       CCG92398.1  [L=638]
Description: Sulfate adenylyltransferase subunit 1 and adenylylsulfate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-58  196.6   0.0    4.9e-58  195.5   0.0    1.6  1  APS_kinase   Adenylylsulphate kinase
    2.1e-40  138.3   0.0    1.2e-39  135.9   0.0    2.0  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    1.1e-08   35.3   0.0    3.8e-08   33.6   0.0    1.9  2  AAA_33       AAA domain
    3.8e-08   33.4   0.3    1.7e-05   24.8   0.0    3.6  2  MMR_HSR1     50S ribosome-binding GTPase
    3.1e-05   23.5   0.1       0.17   11.3   0.0    3.3  3  SRPRB        Signal recognition particle receptor beta subuni
    3.8e-05   24.0   0.0    0.00013   22.3   0.0    1.9  2  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    6.3e-05   22.6   0.7       0.41   10.4   0.0    3.7  3  AAA_29       P-loop containing region of AAA domain
    0.00035   21.1   0.0     0.0028   18.2   0.0    2.3  2  AAA_18       AAA domain
    0.00065   19.5   0.0          1    9.1   0.0    3.0  3  ATP_bind_1   Conserved hypothetical ATP binding protein
    0.00078   19.1   0.0        3.6    7.1   0.0    3.3  3  cobW         CobW/HypB/UreG, nucleotide-binding domain
     0.0009   19.2   0.4        2.4    8.1   0.1    3.5  3  RsgA_GTPase  RsgA GTPase
    0.00091   18.8   0.0     0.0016   18.0   0.0    1.3  1  KTI12        Chromatin associated protein KTI12
     0.0067   16.1   0.0      0.011   15.4   0.0    1.2  1  SWI2_SNF2    SWI2/SNF2 ATPase
     0.0081   15.7   0.1       0.23   11.0   0.0    3.1  3  FeoB_N       Ferrous iron transport protein B
     0.0094   15.6   0.1      0.064   12.9   0.0    2.3  2  SRP54        SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
      0.025   14.8   0.0        7.6    6.8   0.0    3.1  2  Roc          Ras of Complex, Roc, domain of DAPkinase
       0.03   14.0   0.0      0.054   13.2   0.0    1.4  1  PRK          Phosphoribulokinase / Uridine kinase family
      0.032   14.3   0.1       0.41   10.7   0.0    2.3  2  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
      0.054   13.4   0.0       0.43   10.5   0.0    2.2  2  MobB         Molybdopterin guanine dinucleotide synthesis pro
      0.058   13.9   0.0       0.44   11.0   0.0    2.3  2  AAA_23       AAA domain
      0.064   12.5   0.1       0.52    9.5   0.0    2.2  2  Septin       Septin
      0.072   13.5   0.0       0.17   12.3   0.0    1.7  1  AAA_17       AAA domain
       0.11   13.0   0.0       0.28   11.6   0.0    1.7  1  GTP_EFTU_D2  Elongation factor Tu domain 2
       0.11   12.2   0.1       0.35   10.6   0.1    1.8  1  AAA_30       AAA domain
       0.12   11.6   0.0       0.29   10.4   0.0    1.6  1  Zeta_toxin   Zeta toxin
       0.14   12.6   0.0       0.49   10.7   0.0    2.0  1  AAA_16       AAA ATPase domain
       0.15   11.8   0.0        8.2    6.2   0.0    3.2  3  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
       0.15   12.0   0.0        1.7    8.5   0.0    2.3  2  NTPase_1     NTPase
       0.18   10.8   0.2        1.1    8.2   0.0    2.2  3  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
       0.18   10.4   0.0       0.31    9.6   0.0    1.3  1  PEPCK_ATP    Phosphoenolpyruvate carboxykinase


Domain annotation for each model (and alignments):
>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5   0.0   8.3e-61   4.9e-58       2     156 ..     446     601 ..     445     603 .. 0.97

  Alignments for each domain:
  == domain 1  score: 195.5 bits;  conditional E-value: 8.3e-61
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT-EEEEE----SHHHHHHHHHHHHCH. CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfseedRkenirrvaevaklladaglivlvafisPyreeReaarelleea. 99 
                 + v+w+tGlsgsGK+t++n+le+ L+++gi +y++dGd++R gL+kdLgf+++dRkenirr ae ak la++gl+v+va+isP++e+R++ar+++e+  
  CCG92398.1 446 SGVFWMTGLSGSGKTTLSNRLEQILFHRGILAYVIDGDELRGGLSKDLGFDAQDRKENIRRAAETAKTLAKSGLVVIVALISPFEEDRKNARSICEKDg 544
                 5689*******************************************************************************************9877 PP

                 TEEEEEEEE--HHHHHHHTTTSHHHHHHTTSSSSHTTTSS-----SS-SEEEETTTS CS
  APS_kinase 100 lkfievfvdtplevceerDpkglYkkareGeikeftGidspYeaPenpelvvdtdke 156
                 + f e+fvd+p+e+c++rDpk lY ka +Gei ++tG+dspYe+P++++l++ t++e
  CCG92398.1 545 ILFKEIFVDAPIEICKSRDPKFLYLKASKGEIPKMTGLDSPYEPPSHCDLHLLTAQE 601
                 99*************************************************998876 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.0     2e-42   1.2e-39       3     183 ..      11     207 ..       9     233 .. 0.83
   2 ?   -0.6   0.0       1.3   7.9e+02      13      23 ..     456     466 ..     449     476 .. 0.83

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 2e-42
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH.....HHHST..........HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHH CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgeka.....eeerv..........lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFske 86 
                 + ni+++ghvDhGK+TL++r+l++t  + k++++a     +              lD+l eEr + iTi+++ ++++  + ++++ +iD+PGH +F k+
  CCG92398.1  11 TFNIVFAGHVDHGKSTLIGRILWDTDSVPKEKKEAaiaycQ---KnriefeyaflLDSLLEERTQNITIDVTEVNFF--YGQRRFRIIDAPGHLEFLKN 104
                 68***************************977777665432...15669999999**********************..******************** PP

                 HHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTE.EEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHH.. CS
    GTP_EFTU  87 virglrvlDgavlvvdaveGvepqteevlrlalkegvp.iivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvk.. 182
                 +i g+ ++D avlv+d++ G+ +qt++++ l+  +g++ i+v++NK D ++ + +  +   ++ +    + lek +   +    v++ Sa++ge++   
  CCG92398.1 105 MISGATKADAAVLVIDSSVGIGEQTKRHAMLLALLGIKqIVVALNKFDLVHYSPQAYKILHNECI----QLLEKLELPCN---FVIPLSAKSGENIIer 196
                 **************************************************555544443333333....22555555543...6999999999987645 PP

                 ..........H CS
    GTP_EFTU 183 ..........t 183
                           +
  CCG92398.1 197 sthlswyegkP 207
                 55555555544 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.3
                 TSSHHHHHHHH CS
    GTP_EFTU  13 DhGKtTLtdrL 23 
                  +GKtTL+ rL
  CCG92398.1 456 GSGKTTLSNRL 466
                 58*****9998 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       7.5   4.5e+03       2      19 ..      14      31 ..      14      35 .. 0.82
   2 !   33.6   0.0   6.4e-11   3.8e-08       1     115 [.     448     563 ..     448     565 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 7.5
      AAA_33  2 vllvGlpGsGKstlaerl 19
                +++ G+   GKstl+ r+
  CCG92398.1 14 IVFAGHVDHGKSTLIGRI 31
                578888889*****9876 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 6.4e-11
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrerarflklarr 94 
                 ++++ Gl+GsGK+tl+ rl + l      a++++ d+lr  l ++   + +d    ++++++   e+a+  +++g  vi+     ++++r++ +++ ++
  CCG92398.1 448 VFWMTGLSGSGKTTLSNRLEQILFhrgilAYVIDGDELRGGLSKDLGFDAQD---RKENIRRAA-ETAKTLAKSGLVVIVALISPFEEDRKNARSICEK 542
                 689****************88887888****************966655544...455666664.9997777777777776666678************ PP

      AAA_33  95 lgvpvrivvvetdeetlkeRl 115
                  g  ++ ++v+++ e +k+R 
  CCG92398.1 543 DGILFKEIFVDAPIEICKSRD 563
                 ******************995 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   2.9e-08   1.7e-05       1     114 []      13     150 ..      13     150 .. 0.64
   2 ?    3.9   0.0     0.091        55       5      19 ..     452     466 ..     449     478 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2.9e-08
                 EEEEEESTTSSHHHHHHHHH...................T...........STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinalt...................g...........ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgka 69 
                 +++++G+   GKStLi +++                   +           +    ++++  T+d++e ++ +++++++++D pG +e       l++ 
  CCG92398.1  13 NIVFAGHVDHGKSTLIGRILwdtdsvpkekkeaaiaycqKnriefeyafllDSLLEERTQNITIDVTEVNFFYGQRRFRIIDAPGHLE------FLKNM 105
                 5899***************9666666555544444444404444444433334455666677777777777666799********777......67788 PP

                 HHHHHCTSEEEEEEETT...TTCSHHHHHHHHHHHHH.TTSEEEEEEES CS
    MMR_HSR1  70 flaleeadlillvvdas...eeklkpldeeleellee.akkplilvlnk 114
                 +    +ad+++lv+d+s        ++ ++ + ll     k+++++lnk
  CCG92398.1 106 ISGATKADAAVLVIDSSvgiG----EQTKRHAMLLALlGIKQIVVALNK 150
                 888889*********775541....333333333222123556667776 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.091
                 EESTTSSHHHHHHHH CS
    MMR_HSR1   5 vGrpNvGKStLinal 19 
                  G + +GK+tL n+l
  CCG92398.1 452 TGLSGSGKTTLSNRL 466
                 799**********98 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0       0.1        62       5      44 ..      13      52 ..       9      65 .. 0.75
   2 !   11.3   0.0   0.00029      0.17      48     107 ..      87     143 ..      60     167 .. 0.75
   3 ?    5.4   0.0     0.018        11       6      25 ..     449     468 ..     444     477 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.1
                EEEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG. CS
       SRPRB  5 avllvGlsdsGKTslftrLttdsvkktvtSqessaalkvk 44
                +++++G  d GK +l+ r++ d+        e+ +a+  k
  CCG92398.1 13 NIVFAGHVDHGKSTLIGRILWDTDSVPKEKKEAAIAYCQK 52
                699***************9999766655555666665554 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00029
                 GTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHHHHHHHH CS
       SRPRB  48 gskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeillite 107
                 + ++++iD PGh ++ ++++      +++ + v v+DS++   e ++   +l  +l i++
  CCG92398.1  87 QRRFRIIDAPGHLEFLKNMISG---ATKADAAVLVIDSSVGIGEQTKRHAMLLALLGIKQ 143
                 46799*******9998888888...67788999******987776666666666665554 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.018
                 EEEE-STTSSHHHHHHHHHH CS
       SRPRB   6 vllvGlsdsGKTslftrLtt 25 
                 + + Gls sGKT+l +rL +
  CCG92398.1 449 FWMTGLSGSGKTTLSNRLEQ 468
                 6689*************976 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       9.3   5.5e+03      58      84 ..     277     301 ..     266     304 .. 0.72
   2 !   22.3   0.0   2.1e-07   0.00013       5     110 ..     315     417 ..     311     419 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 9.3
                  SS-SSCCSTT-CEEEEEEECCEEEE-- CS
  GTP_EFTU_D3  58 ekkpefvkpGdnvivevelikpialek 84 
                  e++p++v  G+++ +++e  + i +e+
   CCG92398.1 277 ESSPQVVSAGKSTAIQLE--EEIFVER 301
                  457999999998877655..5566665 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 2.1e-07
                  ECCEEEEEEESSS..SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEEEECTTCE CS
  GTP_EFTU_D3   5 htkfeAqvyilekerhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFaiReggrT 102
                  +t+f A++  l    + +i a Y+  + + t +  ++v ++++ +d  t +  +  p+ vk+ ++++v  ++++pia++ +++ +  GrF   +++r 
   CCG92398.1 315 ATDFFARIFWLGD-HPLAIGAPYT--FRLTTQQSIARVLQIQRVIDATTLEDLQPVPMEVKKNETAEVIFRTSAPIACDLFENVQTTGRFVFADQNRI 409
                  5677788777776.5666666665..566677777788***********************************************************9 PP

                  EEEEEEEE CS
  GTP_EFTU_D3 103 vaaGvvte 110
                   + G++ +
   CCG92398.1 410 AGGGIILK 417
                  99999976 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.017        10      18      39 ..       6      28 ..       1      32 [. 0.82
   2 ?    1.9   0.0      0.32   1.9e+02      16      35 ..     233     250 ..     229     251 .. 0.81
   3 !   10.4   0.0   0.00069      0.41      20      38 ..     444     462 ..     435     474 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.017
      AAA_29 18 eidlkg.atlltGpsGsGKSTll 39
                ++ +k  +++++G+   GKSTl+
  CCG92398.1  6 PLGTKTfNIVFAGHVDHGKSTLI 28
                55666678999***********8 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.32
      AAA_29  16 tieidlkgatlltGpsGsGK 35 
                 ++++d++   ll+G+++sGK
  CCG92398.1 233 VFRFDER--RLLAGRIESGK 250
                 5677755..5*********9 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00069
      AAA_29  20 dlkgatlltGpsGsGKSTl 38 
                 +++g++ +tG sGsGK+Tl
  CCG92398.1 444 HRSGVFWMTGLSGSGKTTL 462
                 5678999***********9 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       2.7   1.6e+03      36      82 ..      31      79 ..      12     132 .. 0.53
   2 !   18.2   0.0   4.6e-06    0.0028       4     109 ..     452     562 ..     450     565 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.7
      AAA_18 36 glllevdpealdeskrldedkldklldaleenss....aleegknlvidgh 82
                 l +++  +  +e+k++ + +++k+  ++e +       +e  +n+ id  
  CCG92398.1 31 ILWDTDSVP--KEKKEAAIAYCQKNRIEFEYAFLldslLEERTQNITIDVT 79
                333333333..4444444444444444444433333333333334444433 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 4.6e-06
      AAA_18   4 tGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakdikk..... 96 
                 tG +G+GKttl+++L++ l f   +l  v+  ++l+ +  ++     + +d + ++++++   e +++l++ + +vi  +++ +e+++   +       
  CCG92398.1 452 TGLSGSGKTTLSNRLEQIL-FhRGILAYVIDGDELRGGLSKD-----LGFDAQDRKENIRRAAETAKTLAKSGLVVIVALISPFEEDRKNAR-Sicekd 543
                 9**************8876.4444444444444444444444.....666666666677777777777777888888888888887744433.246888 PP

      AAA_18  97 ......vvLtaspeelleR 109
                       ++++a+ e+++ R
  CCG92398.1 544 gilfkeIFVDAPIEICKSR 562
                 8888888888888888777 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0082       4.9      91     179 ..      88     165 ..      65     192 .. 0.75
   2 ?   -2.3   0.0       5.2   3.1e+03       6      24 ..     284     302 ..     282     307 .. 0.83
   3 !    9.1   0.0    0.0017         1       2      30 ..     452     480 ..     451     484 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0082
  ATP_bind_1  91 ddyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkek.lekelef 179
                 + + ++D PG +e+ + + s+a        + a  +v ++Ds +     +  +++l+al  + +     vv+lnkfDl+  + + +++ +
  CCG92398.1  88 RRFRIIDAPGHLEFLKNMISGA--------TKADAAVLVIDSSVGIGEQTKRHAMLLALLGIKQ----IVVALNKFDLVHYSpQAYKILH 165
                 57889***********999999........7889999999999877655555555666644433....5899******884444444443 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.2
  ATP_bind_1   6 GsGKttfvgalseilelrg 24 
                 ++GK+t ++   ei+ +rg
  CCG92398.1 284 SAGKSTAIQLEEEIFVERG 302
                 79******99999988876 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0017
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrsvavv 30 
                 +G  GsGKtt+ ++l +il  rg   +v+
  CCG92398.1 452 TGLSGSGKTTLSNRLEQILFHRGILAYVI 480
                 6999***************9999888877 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.44   2.7e+02       3      23 ..      14      38 ..      12      58 .. 0.76
   2 !    7.1   0.0    0.0061       3.6      98     162 ..      98     164 ..      93     177 .. 0.74
   3 !    6.7   0.0    0.0081       4.9       3      20 ..     449     466 ..     447     522 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.44
                EEEEESTTCCHHHHHHHHH....CT CS
        cobW  3 tvltGflGsGKTtLlnhll....en 23
                +v++G +  GK+tL+ ++l    + 
  CCG92398.1 14 IVFAGHVDHGKSTLIGRILwdtdSV 38
                678899999*********9776633 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0061
                 HHHTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEE.EE-HHHHCHC...HHHH CS
        cobW  98 pvafteeelksdltldavvavvDaknleaeeekieekaedqlaaadllv.lnKtDlldee.allekl 162
                  + f ++ ++ ++++da v v+D++    e++k +  +   l    ++v lnK Dl+ ++ +  + l
  CCG92398.1  98 HLEFLKNMISGATKADAAVLVIDSSVGIGEQTKRHAMLLALLGIKQIVVaLNKFDLVHYSpQAYKIL 164
                 555668889999************777667777777777777777766559******9996665554 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0081
                 EEEEESTTCCHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhl 20 
                 + +tG  GsGKTtL n+l
  CCG92398.1 449 FWMTGLSGSGKTTLSNRL 466
                 5689**********8776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.077        46     102     122 ..      14      34 ..       5      51 .. 0.84
   2 ?    3.0   0.1      0.15        88      37      64 ..     131     164 ..      86     199 .. 0.65
   3 !    8.1   0.1     0.004       2.4     101     121 ..     448     468 ..     428     475 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.077
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                  +v++G+   GKStLi ++l +
   CCG92398.1  14 IVFAGHVDHGKSTLIGRILWD 34 
                  79*************998755 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.15
                  HHHHHHHHTT-.EEEEEEE-GGG--HHH.....H CS
  RsgA_GTPase  37 rfLvlaeekgi.epvivlnKiDlleeee.....e 64 
                  r  +l+   gi ++v++lnK Dl++ +       
   CCG92398.1 131 RHAMLLALLGIkQIVVALNKFDLVHYSPqaykiL 164
                  4444444455547889999999998766333332 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.004
                  EEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallp 121
                  +  + G SG GK+tL n+l +
   CCG92398.1 448 VFWMTGLSGSGKTTLSNRLEQ 468
                  56789*************975 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.6e-06    0.0016       6      75 ..     451     521 ..     448     526 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.6e-06
                 EE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH..TTSS..S--GGGHHHHHHHHHHHHHHHHTT.SEEE CS
       KTI12   6 ltGlPssGKstrakeLakaleeekrsvvviddeslg.iekds..ykdsakekalRsslrsavkrdLskekvVI 75 
                 +tGl  sGK+t++++L++ l ++++  +vid + l+ + +++  ++ + + +++R    ++ ++ L k+ +V+
  CCG92398.1 451 MTGLSGSGKTTLSNRLEQILFHRGILAYVIDGDELRgGLSKDlgFDAQDRKENIRR--AAETAKTLAKSGLVV 521
                 89*****************************6666645666635555555555555..567778888887665 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.9e-05     0.011       9     118 ..     435     541 ..     428     554 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.9e-05
   SWI2_SNF2   9 avervkegdrkgGviWHt..qGSGKsltmvflakklleeelknpkvvvvtDRkdLdkQlsktfakageekpkqaesrkeLkellekesekiifttiqKf 105
                 av+r+k   +++Gv+W t   GSGK+  +  l + l +    +  +  v+D ++L   lsk +    +++++++++ +e  ++l+k+   +i+++i  f
  CCG92398.1 435 AVQRAKFLGHRSGVFWMTglSGSGKTTLSNRLEQILFH----RGILAYVIDGDELRGGLSKDLGFDAQDRKENIRRAAETAKTLAKSGLVVIVALISPF 529
                 44555555589******9667*****999999999888....6678899************99876777778999999******9989999******** PP

   SWI2_SNF2 106 eeeekeklevlse 118
                 ee++k+  + + e
  CCG92398.1 530 EEDRKN-ARSICE 541
                 976553.333333 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0         1     6e+02       2      20 ..      13      31 ..      12      38 .. 0.86
   2 !   11.0   0.0   0.00039      0.23      33     149 ..      74     193 ..      71     199 .. 0.63
   3 ?   -1.5   0.0       2.7   1.6e+03       6      21 ..     452     467 ..     449     472 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1
                EEEEEESTTSSHHHHHHHH CS
      FeoB_N  2 tvalvGnpnvGkttlfnal 20
                +++++G  + Gk+tl+ ++
  CCG92398.1 13 NIVFAGHVDHGKSTLIGRI 31
                6899***********9876 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00039
                 SSSEEEEEEEEETTEEEEEEE----SSS..SSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHH..TTEEE.. CS
      FeoB_N  33 vtvekkegklklkgkeveivDlPGiYsl..sayseeekvardflleeepdvvvnvvdatnlernLyLtlqllelgvpvvlalnmideaek..kgiei.. 125
                 +t++ +e+++ + +++++i+D PG  ++  + +s   k    +l+   +d  v + +    +r+ + +l ll + +++v+aln++d ++   + ++i  
  CCG92398.1  74 ITIDVTEVNFFYGQRRFRIIDAPGHLEFlkNMISGATKADAAVLV---IDSSVGIGEQ--TKRHAM-LLALLGI-KQIVVALNKFDLVHYspQAYKIlh 165
                 799*********************987722223333333333333...4444444443..444443.3455555.57999******9975124455522 PP

                 .-HHHHHHHHTS-...EEEEBTTTTBTH CS
      FeoB_N 126 .dlkkLsekLgvp...vvktsakkkegi 149
                  +  +L ekL++p   v+++sak++e+i
  CCG92398.1 166 nECIQLLEKLELPcnfVIPLSAKSGENI 193
                 2344678888887445578888888776 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.7
                 EESTTSSHHHHHHHHH CS
      FeoB_N   6 vGnpnvGkttlfnalt 21 
                  G   +Gkttl n+l 
  CCG92398.1 452 TGLSGSGKTTLSNRLE 467
                 677889*******986 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.6   9.7e+02     108     128 ..     106     126 ..      91     152 .. 0.64
   2 !   12.9   0.0   0.00011     0.064       3      56 ..     448     501 ..     446     521 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.6
                 HHHHHSSSEEEEEEETTBHTH CS
       SRP54 108 ikkvvkpdevllvldattgqe 128
                 i+ ++k+d  +lv+d+++g  
  CCG92398.1 106 ISGATKADAAVLVIDSSVGIG 126
                 445668888889999987743 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00011
                 EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTT CS
       SRP54   3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklg 56 
                 v+ + Gl G+GKTt   +L ++l ++g  + ++  D  R +  + L   a+  +
  CCG92398.1 448 VFWMTGLSGSGKTTLSNRLEQILFHRGILAYVIDGDELRGGLSKDLGFDAQDRK 501
                 6789********************************999988877777666655 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.013       7.6       2      42 ..      14      55 ..      13     153 .. 0.86
   2 ?    3.8   0.0      0.11        65       4      24 ..     451     471 ..     449     479 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.013
                EEEESSTTSSHHHHHHCHCT-CCC.-EEETTTTEEEEEEECG CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfs.ekekstigvdfltkevt 42
                +v+ G    GK++l+ r++ d+ s +kek+  ++ +++k+  
  CCG92398.1 14 IVFAGHVDHGKSTLIGRILWDTDSvPKEKKEAAIAYCQKNRI 55
                7899999**********9987765488899999999888654 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.11
                 EESSTTSSHHHHHHCHCT-CC CS
         Roc   4 lvGdsgvGKtsllkrfvedkf 24 
                 + G sg+GKt+l +r+ +  f
  CCG92398.1 451 MTGLSGSGKTTLSNRLEQILF 471
                 56999**********977555 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     9e-05     0.054       4      38 ..     451     485 ..     448     513 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9e-05
         PRK   4 vagsSGaGkttvarklekifgrekvkaaeiegdsf 38 
                 ++g SG+Gktt++++le+i+ + ++ a +i+gd++
  CCG92398.1 451 MTGLSGSGKTTLSNRLEQILFHRGILAYVIDGDEL 485
                 699*****************999999999988765 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.67     4e+02      73     116 ..     136     187 ..      52     197 .. 0.77
   2 ?   10.7   0.0   0.00069      0.41       6      87 ..     453     532 ..     448     547 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.67
                 H......EEEEEEEEESS...-TTCHHHHHHHHHHC....TS-EEEEEE--C CS
                 x....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx RF
        CbiA  73 l....lkiagvvlnrvdgeneetllkealeelkqry....gvpvlgviprde 116
                 l    +k + v ln++d  +++ + ++ l +++ ++    ++p+  vip + 
  CCG92398.1 136 LallgIKQIVVALNKFDLVHYSPQAYKILHNECIQLleklELPCNFVIPLSA 187
                 1444677889999999999999999988888886666655555555777665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00069
                 SSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHHCCHCCCHHHHHHCHCHHHH...EEEEEEEEESS. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiepdlkrllellealgkkkall.lkiagvvlnrvdge 87 
                 + +G+GKTtl+  L ++l  rg    ++D D  +  l+   ++ ++ ++d+k  ++ +++  k++a+  l ++  ++  ++++
  CCG92398.1 453 GLSGSGKTTLSNRLEQILFHRGILAYVIDGDELRGGLS---KDLGFDAQDRKENIRRAAETAKTLAKSgLVVIVALISPFEED 532
                 669********************999999998777666...788888887777777777777776655555555555555555 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.4   8.2e+02       2      20 ..      14      32 ..      13      37 .. 0.87
   2 ?   10.5   0.0   0.00071      0.43       2      28 ..     449     475 ..     448     484 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.4
        MobB  2 lgivgksgsGKTtLlekli 20
                + ++g+ + GK tL+ +++
  CCG92398.1 14 IVFAGHVDHGKSTLIGRIL 32
                5789***********9876 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00071
        MobB   2 lgivgksgsGKTtLleklipelkargl 28 
                 + ++g sgsGKTtL ++l ++l +rg+
  CCG92398.1 449 FWMTGLSGSGKTTLSNRLEQILFHRGI 475
                 6689******************99997 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       2.2   1.3e+03      23      46 ..      15      38 ..      12     131 .. 0.74
   2 ?   11.0   0.0   0.00073      0.44      18      46 ..     445     473 ..     437     544 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 2.2
      AAA_23 23 lItGpNGaGKTTildAiklaLyge 46
                ++ G+   GK+T++  i + +   
  CCG92398.1 15 VFAGHVDHGKSTLIGRILWDTDSV 38
                677888899999997777755554 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00073
      AAA_23  18 skgltlItGpNGaGKTTildAiklaLyge 46 
                  +g++  tG  G+GKTT+ + +  +L+++
  CCG92398.1 445 RSGVFWMTGLSGSGKTTLSNRLEQILFHR 473
                 57999***************999999984 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00087      0.52       4      70 ..      11      82 ..       8     104 .. 0.78
   2 ?    0.2   0.0      0.62   3.7e+02       9      24 ..     451     466 ..     448     476 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00087
                EEEEEEEEBTTSSCCCCCCT.TSSSS------------.------S-EEE...EEEEEETTCEEEEEEEE-- CS
      Septin  4 eftlmvvGesglGkttlint.lfetdlieeekleease.kkkktveikkk...kvvieedgvklnltviDtp 70
                +f+++ +G+   Gk+tli   l  td +++ek e a    +k+ +e++ +   ++++ee+ +++++ v + +
  CCG92398.1 11 TFNIVFAGHVDHGKSTLIGRiLWDTDSVPKEKKEAAIAyCQKNRIEFEYAfllDSLLEERTQNITIDVTEVN 82
                79****************752678888888877777665667777777542336788999888888887655 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.62
                 EEEBTTSSCCCCCCTT CS
      Septin   9 vvGesglGkttlintl 24 
                 + G sg Gkttl n l
  CCG92398.1 451 MTGLSGSGKTTLSNRL 466
                 5799********9987 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00029      0.17       1      64 [.     452     510 ..     452     575 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00029
                 EE-TTSSHHHHHHHHHHHH...T.EEEEEHHHHHHHHHHTT.TS.HSSHHHHCTSHHHHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky...g.fthlsaGdllreeakrg.gl.akardemrklpleekkelqkeaaek 64 
                 +G+ GsGK+t++++l + +   g + ++  Gd lr   +++ g  a++r+           e  ++aae+
  CCG92398.1 452 TGLSGSGKTTLSNRLEQILfhrGiLAYVIDGDELRGGLSKDlGFdAQDRK-----------ENIRRAAET 510
                 69*************997776651556666****9665555344222222...........222222222 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00048      0.28       5      39 ..     243     272 ..     240     285 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00048
                  EEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEE CS
  GTP_EFTU_D2   5 lgrvysGtlkkGdevrilgndtskkeivtrissle 39 
                   gr++sG+l+ G+ + +   +++kk   +++++++
   CCG92398.1 243 AGRIESGKLQQGELIAF--YPSGKK---SKVKAIH 272
                  59***************..778888...8888875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00058      0.35      13      81 ..     441     508 ..     434     524 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00058
      AAA_30  13 lltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkv.Laeelgieastiakllkrlk 81 
                 +l+++  v  +tG  G+GKtt+ + l++++ ++g  ++++   g   +  L+++lg++a+  ++ ++r +
  CCG92398.1 441 FLGHRSGVFWMTGLSGSGKTTLSNRLEQILFHRG--ILAYVIDGDELRGgLSKDLGFDAQDRKENIRRAA 508
                 5667777999*******************99998..4444444444444466666666655555554444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00048      0.29      20      56 ..     450     487 ..     437     519 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00048
  Zeta_toxin  20 llgGqpGAGKselaellkdele.rqgnvvrldpDdlRe 56 
                  + G +G+GK++l++ l++ l  r+  + ++d+D+lR 
  CCG92398.1 450 WMTGLSGSGKTTLSNRLEQILFhRGILAYVIDGDELRG 487
                 68999****************8444455689****996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00083      0.49      24      57 ..     446     479 ..     430     603 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00083
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggiflr 57 
                 +++   +G sG+GK++l ++l + l  +g+++  
  CCG92398.1 446 SGVFWMTGLSGSGKTTLSNRLEQILFHRGILAYV 479
                 4667789***************998888533322 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.88   5.3e+02       3      21 ..      13      31 ..      11      62 .. 0.86
   2 ?    0.3   0.0      0.91   5.5e+02      39      73 ..      91     121 ..      77     178 .. 0.62
   3 ?    6.2   0.0     0.014       8.2       6      23 ..     451     468 ..     447     475 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.88
   PduV-EutP  3 killiGkvgsGKttLtqal 21
                +i++ G+v+ GK tL  ++
  CCG92398.1 13 NIVFAGHVDHGKSTLIGRI 31
                6899**********98665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.91
   PduV-EutP  39 eviDtPGeylenrklysalivtsaeadvialvqda 73 
                 ++iD+PG       + + +i+ +++ad  +lv d+
  CCG92398.1  91 RIIDAPGHLE----FLKNMISGATKADAAVLVIDS 121
                 5789998543....444445555555555555443 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.014
   PduV-EutP   6 liGkvgsGKttLtqalkg 23 
                 + G +gsGKttL+++l++
  CCG92398.1 451 MTGLSGSGKTTLSNRLEQ 468
                 5699***********987 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.78   4.6e+02       2      20 ..      14      32 ..      13      39 .. 0.86
   2 ?    8.5   0.0    0.0028       1.7       3      39 ..     450     486 ..     448     522 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.78
                EEEE--TTSSHHHHHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvl 20
                ++  G+   GK+Tl+ ++l
  CCG92398.1 14 IVFAGHVDHGKSTLIGRIL 32
                7788999********9986 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0028
                 EEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE- CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellkssgvkvgGfyteevr 39 
                  +TG +G+GKtTl +++ + l ++g+    +   e r
  CCG92398.1 450 WMTGLSGSGKTTLSNRLEQILFHRGILAYVIDGDELR 486
                 68***************99998888766555555555 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.7   2.8e+03      30      49 ..      12      31 ..       4      35 .. 0.79
   2 ?   -1.6   0.0       1.7     1e+03      40      61 ..     285     306 ..     282     309 .. 0.87
   3 ?    8.2   0.0    0.0018       1.1      28      61 ..     445     478 ..     432     487 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.7
                EEEEEEE-TTSSHHHHHHHH CS
        MeaB 30 qvvGltGvPGaGkstlveal 49
                  + + G    Gkstl+ ++
  CCG92398.1 12 FNIVFAGHVDHGKSTLIGRI 31
                56778888899*****9886 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.7
                 SSHHHHHHHHHHHHHCTT--EE CS
        MeaB  40 aGkstlvealglelrrrGkrva 61 
                 aGkst+++   + +++rG+ +a
  CCG92398.1 285 AGKSTAIQLEEEIFVERGEIIA 306
                 8*******9999999*998765 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0018
                 -SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EE CS
        MeaB  28 raqvvGltGvPGaGkstlvealglelrrrGkrva 61 
                 r+ v  +tG+ G+Gk tl ++l + l +rG    
  CCG92398.1 445 RSGVFWMTGLSGSGKTTLSNRLEQILFHRGILAY 478
                 6667789*********************997555 PP

>> PEPCK_ATP  Phosphoenolpyruvate carboxykinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00053      0.31     215     233 ..     451     469 ..     434     473 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00053
                 EEE-TTSSHHHHH-BTTB- CS
   PEPCK_ATP 215 fFGLSGtGKTtLsadperk 233
                 + GLSG+GKTtLs+  e+ 
  CCG92398.1 451 MTGLSGSGKTTLSNRLEQI 469
                 35***********877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 4392.34
//
Query:       CCG92399.1  [L=132]
Description: Molybdopterin converting factor, large subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-26   93.1   0.0    1.4e-26   93.0   0.0    1.0  1  MoaE      MoaE protein


Domain annotation for each model (and alignments):
>> MoaE  MoaE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   7.9e-31   1.4e-26       2     112 ..       8     117 ..       7     118 .. 0.91

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 7.9e-31
                 ESS---HHHHHHHH--TT--EEEEEEEE------TS-EEEEEECC-HHHHHHHHHHHHHHHHCCCTTSEEEEEEE-EEEETTSEEEEEEEEESSHHHHH CS
        MoaE   2 teepldvaeiealvaspkaGAvvlFvGtvRdsfdgkkvteLeyeayepmaektleeiaeearerwelervavvHrlGelevgeasvvvavssahRkeaf 100
                 t+epl++a + +l  s + GAvv F G+vR  + g+k+++L+yeay  ma++ l eia+e+ ++++ +r+ v+Hr+G++ vge+sv+  + s hR eaf
  CCG92399.1   8 TDEPLKIAPL-RLPLSGESGAVVEFWGLVRSMEGGQKIAALHYEAYIAMAKRLLYEIAQELLKKYPCQRLEVCHRIGPVAVGEPSVFLRIYSTHRSEAF 105
                 5677777773.33447789***********7767***************************************************************** PP

                 HHHHHHHHHHHH CS
        MoaE 101 eaceylidelKk 112
                 + +++ i++lK+
  CCG92399.1 106 QLAQEFINRLKS 117
                 ***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 976.92
//
Query:       CCG92400.1  [L=92]
Description: Molybdopterin converting factor, small subunit (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-09   36.4   0.0    7.8e-09   36.0   0.0    1.1  1  ThiS      ThiS family


Domain annotation for each model (and alignments):
>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   4.4e-13   7.8e-09       3      77 .]      21      92 .]      19      92 .] 0.94

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 4.4e-13
                ETTCCHHHHT..CEEEEESSTSBHHHHHHHHHHHTCHHGTTTTEEEEETTEEEGCCTTTSB--TTCEEEEEESTTC- CS
        ThiS  3 lfaelrelag..eeelelaegstvaelleaLgerypelalerrvavavNgeivprlwldtelkdgDevailppVaGG 77
                 fa+++el g  e+ l+++  +t +e++ +++  +   + + + +va++++++++   d+++ +  e+ai+ppV+GG
  CCG92400.1 21 AFAQAKELLGfaEKMLLVDRSKTPREIVLEIEPSF--FEKIHGARVAIDQRYASW---DQPIEEAEEMAIIPPVSGG 92
                59*****************************9877..4478**************...******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 626.46
//
Query:       CCG92401.1  [L=336]
Description: Molybdenum cofactor biosynthesis enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.8e-28   96.8   0.0    1.8e-27   95.8   0.0    1.5  2  Mob_synth_C  Molybdenum Cofactor Synthesis C
    2.3e-24   86.7   0.0    3.5e-24   86.0   0.0    1.3  1  Radical_SAM  Radical SAM superfamily
    7.2e-06   26.3   0.1    2.1e-05   24.8   0.0    1.7  2  Fer4_12      4Fe-4S single cluster domain
    2.3e-05   24.5   0.0    9.3e-05   22.5   0.0    1.9  2  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Mob_synth_C  Molybdenum Cofactor Synthesis C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       3.1   1.4e+04      78      87 ..     103     112 ..     101     113 .. 0.85
   2 !   95.8   0.0     4e-31   1.8e-27       2     128 .]     193     321 ..     192     321 .. 0.96

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 3.1
                  EEE-TTSEEE CS
  Mob_synth_C  78 lRltadGklk 87 
                  +Rl+++G+l 
   CCG92401.1 103 VRLSTNGTLL 112
                  8******985 PP

  == domain 2  score: 95.8 bits;  conditional E-value: 4e-31
                  EEEEEE---B-TTSSB--SSB--HHHHHHHHHHHS-EEEE--SS.T-SSEEEEETTT--EEEEE-TTTS-.-GGG--EEEE-TTSEEESSSS-SS-EE CS
  Mob_synth_C   2 elrfIElmpvgegeewrekkvvsadeilerieerlalleakket.kgpakrykikdgkgeiglIapvsep.FCasCnRlRltadGklktCLfaeeeid 97 
                   +rfIElmp+  + + ++++++s +e+ +r+e++  l++ + +  +gpak++++k+ +  +g+I ++s+  FC++Cn++Rlt+dG +++CL+++ eid
   CCG92401.1 193 VIRFIELMPISYTGKISKENFLSVAELKKRLEKQDDLEPLDYKLgQGPAKYFRMKKRNAIVGFIGAISDFhFCDNCNKMRLTSDGFIRPCLGNHLEID 290
                  59**************************************95556*************99********977*************************** PP

                  HHHHHHTT--HHHHHHHHHHHHHT----HH. CS
  Mob_synth_C  98 lrdllregaseeeLkelikealarkkekhkl 128
                  ++++lr + +  ++ ++++ al+rk+++h++
   CCG92401.1 291 IKPFLRPSVDPFKVYQAFELALQRKPPEHSF 321
                  ****************************985 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.0   7.9e-28   3.5e-24       1     166 [.      25     186 ..      25     187 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 7.9e-28
                  EEEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpdeeklerll 98 
                  ++vt  Cn rC++C     +   +++  ls eei   +  ++ ++g k + ++ggepl+++  v ++e+l k+    ++++++tngtl+   ++++l+
   CCG92401.1  25 ISVTDRCNERCVYCFPQDLGFLSKKENLLSFEEIYWTIFHGALRHGFKDFRITGGEPLVRKGTVSFIEQLTKIS-GVRSVRLSTNGTLL-GLYARKLK 120
                  6899***********999899*****************99999999***************************6.**************.******** PP

                  HTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  99 elgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleellel 166
                  e+++  v+++l+ +++    k++  g+++  vle+++ + ++gi++v++++v+l+G n+ee+  l+e+
   CCG92401.1 121 EANIAGVNVSLDCLNPA-LYKKI-TGGDIAPVLEGIDECQKVGIESVKINTVLLRGINEEEFLPLIEW 186
                  *****************.77777.78************************************999998 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   4.6e-09   2.1e-05      12     113 ..      28     129 ..      14     135 .. 0.77
   2 ?   -1.9   0.0      0.84   3.8e+03      68      96 ..     176     209 ..     173     226 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 4.6e-09
     Fer4_12  12 vsgCnlsCkgCfnketwsfksgkef.t.kelleeiiedlkkesiegltllGGEPllpenaeallelvkevkeekp.ekdiwlytgytleelskkekeel 107
                 + +Cn +C +Cf +++   +++++  + +e+   i++ +  +  +++ ++GGEPl+   ++  +++++++ +      + ++++g+ l    +k ke  
  CCG92401.1  28 TDRCNERCVYCFPQDLGFLSKKENLlSfEEIYWTIFHGALRHGFKDFRITGGEPLV---RKGTVSFIEQLTKISGvRSVRLSTNGTLLGLYARKLKEAN 123
                 678***********998776655552459999999999999999************...8888888888888777677899999999988877655555 PP

     Fer4_12 108 lkeidv 113
                 ++ ++v
  CCG92401.1 124 IAGVNV 129
                 555555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.84
     Fer4_12  68 naeallelvkevkeek.....pekdiwlytgytl 96 
                 n e++l+l+++  e+k     +e   ++ytg + 
  CCG92401.1 176 NEEEFLPLIEWASEKKlvirfIELMPISYTGKIS 209
                 6777888888887776333323555666666665 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.1e-08   9.3e-05       5      92 ..      28     112 ..      25     134 .. 0.71
   2 ?   -1.3   0.0      0.53   2.4e+03      63      82 ..     176     193 ..     172     229 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.1e-08
     Fer4_14   5 lsgCnlsCkgCdnket.w.kselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletngtle 92 
                 + +Cn  C+ C+ ++  + +++ +  + ee+  +i++ +  + +  +   +tGGePL     k  + ++++l +     +++l tngtl 
  CCG92401.1  28 TDRCNERCVYCFPQDLgFlSKKENLLSFEEIYWTIFHGALRHGF--KDFRITGGEPLVR---KGTVSFIEQLTKISGVRSVRLSTNGTLL 112
                 679*********77741313344445667777899977777777..6689*******66...556667777777666679*******985 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.53
     Fer4_14  63 nkkellklvkrlkeeypekk 82 
                 n++e+l+l+++  e++  + 
  CCG92401.1 176 NEEEFLPLIEWASEKK--LV 193
                 7889999999988877..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2424.22
//
Query:       CCG92402.1  [L=126]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-18   65.4   0.6    6.1e-18   64.9   0.6    1.3  1  DUF1844      Domain of unknown function (DUF1844)
  ------ inclusion threshold ------
      0.061   13.5   0.1       0.08   13.1   0.1    1.2  1  GP3_package  DNA-packaging protein gp3


Domain annotation for each model (and alignments):
>> DUF1844  Domain of unknown function (DUF1844)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.6   6.8e-22   6.1e-18       3      73 .]      18      88 ..      16      88 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 6.8e-22
     DUF1844  3 FstlvlslassAlvaLGelpdpetgkkekdlelAkqsIdlLamLkeKtkgnLdeeEerlLeealyeLrlry 73
                F  lv++ +++Al+ LG++++p+++ ++ +le+A + Id L+ Lk Kt+gnL+ eE+r L+ +l+eLrl y
  CCG92402.1 18 FLALVMMKYHEALFLLGLIKAPGHELQSPKLEEAAEVIDQLEALKIKTQGNLSLEESRTLDGLLTELRLSY 88
                999******************************************************************98 PP

>> GP3_package  DNA-packaging protein gp3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   8.9e-06      0.08      31      86 ..      63     118 ..      41     124 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.9e-06
                  EE...EEEE-----HHHHHHHHT--.HHHHHHHGG..SHHHHHHHHHHHHHHHHHHH CS
  GP3_package  31 akegyevvgdraptvtGLalyLgis.rstlkeyekrkrefsetierikqivenqqie 86 
                  +k + +   +++ t++GL   L  s  +t+k++ek+k e  et ++i++  e+  ++
   CCG92402.1  63 IKTQGNLSLEESRTLDGLLTELRLSyLKTAKDWEKKK-EEPETEKKIEKPLETDPEK 118
                  3333367779999**********************88.7778888888877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       901  (0.0502538); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1005.13
//
Query:       CCG92403.1  [L=845]
Description: putative coenzyme PQQ synthesis protein F [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-53  179.4   0.0    6.8e-25   88.1   0.0    3.1  3  Peptidase_M16_C  Peptidase M16 inactive domain
      1e-44  152.1   0.0    1.5e-30  106.1   0.0    3.0  3  Peptidase_M16    Insulinase (Peptidase family M16)
  ------ inclusion threshold ------
       0.13   12.1   0.0       0.24   11.3   0.0    1.3  1  DUF1068          Protein of unknown function (DUF1068)
       0.17   10.7   0.0       0.33    9.8   0.0    1.3  1  DUF4554          Domain of unknown function (DUF4554)


Domain annotation for each model (and alignments):
>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0     3e-28   1.4e-24       2     180 ..     181     354 ..     180     357 .. 0.95
   2 ?   -0.2   0.0      0.19   8.7e+02      30     111 ..     400     494 ..     397     544 .. 0.59
   3 !   88.1   0.0   1.5e-28   6.8e-25       2     183 .]     603     779 ..     602     779 .. 0.89

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 3e-28
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHTT CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpskended 95 
                      ++r+ + ++y++ Y p n+ l++ G v++ee+ + + + +++ + +     + +++  +p++l+k+   ++    e   + + f++p++ ++ed
       CCG92403.1 181 IDRQAVLDYYQSRYVPQNVFLVVSGAVNPEEVYAKATEILSKEPMK---FCPLIDIADEPPQLSKRFASKEIAT-EIGRICMLFHVPGL-HHED 269
                      789*****************************************87...8889999999999999999999999.9*************.**** PP

                      HHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHHHHH CS
  Peptidase_M16_C  96 dlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeglteeelerak 180
                        al++++t L ++ +s L ++l ekeg+a+ + af+  ++  g+fgi a+++penve++ e il+elr + k g++eee++ + 
       CCG92403.1 270 APALQLFSTFLAQTRSSLLHQKLVEKEGIAQEIDAFFLTGSTMGVFGIEAKCIPENVEKLSERILEELRSFPKRGISEEEFTLSL 354
                      ************************************888889***************************************8765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.19
                      HHHHHHHHHHHHTTSTHHSH...CSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECT...............CTHTTHHHHHHHHHH CS
  Peptidase_M16_C  30 heelvkliekyfgdlkaska...ppakptgepltpatlkkppvvlkkldeeqahlslafegpsk...............endeddlalavlntl 105
                       e++++li +yf + + s     p+++ ++++ +    +k+p v++ +   ++ ++l ++ +++               e++e++   ++ + +
       CCG92403.1 400 KEKILELIPRYFREENLSQVqliPKEQKPNVFSS---TSKEPTVNHFEL--SNGIQLIYRSNELplqyfratfdggplwEPQEKSGISKLAAAI 488
                      6788889999998888887765533333333322...344444444444..4666666666666555555555555556666666666666666 PP

                      HHSSTT CS
  Peptidase_M16_C 106 Lgggme 111
                      L+ g  
       CCG92403.1 489 LLKGTR 494
                      666644 PP

  == domain 3  score: 88.1 bits;  conditional E-value: 1.5e-28
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHTT CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpskended 95 
                      +t+ed+++f+ + ++  +mvl i G v +e+ +k ie  f +++a++   +   ++p+  +  k+  v  k    eqa + + f+++++  d+d
       CCG92403.1 603 ITVEDIRNFILSVFQTGRMVLGIGGPVAPEKWLKRIESSFVSFPARS--IPSSFEFPVF-PLEKPLKVEQKIPGKEQAVVGISFRTKPI-ADPD 692
                      8*******************************************997..3344444443.4444444444444446*************.**** PP

                      HHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHH CS
  Peptidase_M16_C  96 dlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeglteeeleraknql 183
                      +++l+v++++L +   srL+ ++re++glay v+    ++   g f+i a +dp+  eev+++i+++l++++++g+ eeel+rak++l
       CCG92403.1 693 QIPLEVISEILSDL-GSRLFIKIREEKGLAYFVFPTRFIGWKGGAFSIIAGTDPKFKEEVEKLIFNVLEDICQHGFLEEELQRAKAKL 779
                      **************.*********************7777799******************************************976 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.0   3.3e-34   1.5e-30       2     146 ..      27     172 ..      26     174 .. 0.97
   2 !   42.6   0.0   1.3e-14   5.8e-11      17     148 ..     465     596 ..     455     597 .. 0.92
   3 ?   -3.7   0.0       2.4   1.1e+04      88     116 ..     756     783 ..     751     796 .. 0.61

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 3.3e-34
                    EEEEE-TSSSEEEEEEEES-SGGGSCTTT.TTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHH CS
  Peptidase_M16   2 valesdppaktsavglvvdaGSryepkdl.nGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfk 96 
                    v+  s+ +a+ +++  + ++GS++e k++ +G++H+leh++fkgT+++++++++  +++lGg+lnA+ts+++tvY+v+++s+  ++ald+l+d + 
     CCG92403.1  27 VLVDSNYQAEVVSLQFWCATGSIHEGKYIgSGISHFLEHLLFKGTAQRDGKRIVWDMQALGGHLNAYTSYDRTVYHVDLPSSCWKEALDILSDLVF 122
                    677889999*******************978***************************************************************** PP

                    SBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS CS
  Peptidase_M16  97 aplleesevererkvvekeveavdaepekvveenlhaaayrekalgrsll 146
                    ++++ ++ +e+e++v+++e+++v++ p+  +++   ++a++ ++l+ +++
     CCG92403.1 123 HAAIPPDSFEEEKEVIRREIAMVEDDPDSCLFQLAFETAFSYHPLKYPII 172
                    *********************************************99986 PP

  == domain 2  score: 42.6 bits;  conditional E-value: 1.3e-14
                    EEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBTTSHHHHHHHHHHH CS
  Peptidase_M16  17 lvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfkaplleesevererkvv 112
                     ++d G + ep++ +G++ l   +++kgT k+++++la+ +e lGg++ A +   +   y+e+ s++ e+ ++++++++ +p+  e e+e e+ + 
     CCG92403.1 465 ATFDGGPLWEPQEKSGISKLAAAILLKGTRKRSAEELAKGIELLGGTYGADSGNNTAGVYLESMSEAWESSFELFSEIIHEPACLERELEIEKRKQ 560
                    568899999*************************************************************************99999999988877 PP

                    HHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS-T CS
  Peptidase_M16 113 ekeveavdaepekvveenlhaaayrekalgrsllgp 148
                     + +  + + p ++++  l ++ ++ ++++r  lg+
     CCG92403.1 561 IHHIRLQMDDPVHILQSLLRKTLWQGHPYERDPLGT 596
                    7777777777789***************99988776 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.4
                    HHHHHHHHHSBTTSHHHHHHHHHHHHHHH CS
  Peptidase_M16  88 ldvladvfkaplleesevererkvvekev 116
                    ++vl d+ ++  + e+e++r + +++ e 
     CCG92403.1 756 FNVLEDICQHG-FLEEELQRAKAKLLSEE 783
                    56677766654.55666666566555554 PP

>> DUF1068  Protein of unknown function (DUF1068)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.2e-05      0.24      72     121 ..     742     789 ..     733     793 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.2e-05
     DUF1068  72 khdpevseemeknfvdllseelklreaeaeekqkradvalleakklasqY 121
                   dp+ +ee+ek + ++l++ +  ++   ee+ +ra+++ll   k+asqY
  CCG92403.1 742 GTDPKFKEEVEKLIFNVLED-I-CQHGFLEEELQRAKAKLLSEEKIASQY 789
                 689*************9965.5.45667789999**************** PP

>> DUF4554  Domain of unknown function (DUF4554)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   7.5e-05      0.33     317     383 ..     753     819 ..     744     834 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 7.5e-05
     DUF4554 317 tklhkifkeitqhrflkhcscevkqqltpekkdsaqntedahensslellaetsgqaenkrlkrgsl 383
                   + +++++i qh fl+   +  k +l +e k ++q  + +  +++++ l + +++ e+k++k+   
  CCG92403.1 753 KLIFNVLEDICQHGFLEEELQRAKAKLLSEEKIASQYPSSSIARATIDALLGLGWDYEEKKIKKIEQ 819
                 45678999******************************************************98653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 6143.77
//
Query:       CCG92404.1  [L=163]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1266.35
//
Query:       CCG92405.1  [L=286]
Description: Spermidine/putrescine-binding periplasmic protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-12   45.1   0.4      3e-06   26.8   0.1    2.1  2  SBP_bac_6  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   1.7e-10     3e-06       2      86 ..      46     130 ..      45     154 .. 0.88
   2 !   16.9   0.0   1.8e-07    0.0032     134     217 ..     161     247 ..     149     273 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.7e-10
   SBP_bac_6   2 plpdlilsfdkdflekfieeglfqpld..panlpnvnkdfaeeglkdpdgkyypygvgplvlavnkdrlkgrpvPksWaDLldPeyk 86 
                 ++ dl+    ++++  +++++l++pl+  ++ lp+v+++f ++ + +++++ +pyg+  l++ + k   + + +P+ W++L +P y 
  CCG92405.1  46 EKFDLVA-IPDRLVYTLQKQNLLAPLPidQKLLPRVDHKFLYHYYDQSNHYCWPYGWTLLGIGFPKAT-GSKVYPTHWSELHNPLYT 130
                 5678887.888999999*******99888***********99888888****************9888.55657**********994 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.8e-07
   SBP_bac_6 134 kaagslesgepavsvvpyffadilpekkkgknlkvvwPedGalvspifmlvkkg.kkkelakafidfllspe.vqailakagg..vfP 217
                 k ++++++  p + + ++  + +l+ ++k+k++ v  P++ +++ +  ++++++  + ++ k+ + fl sp+  +ai++ +++  v+P
  CCG92405.1 161 KLVAQNNPT-PPLHIRIDTISELLKTNEKEKKWTVYLPKEYSWITIFHWAIPRSaANMDRIKESLLFLCSPQeQAAIVSTNWLgaVSP 247
                 555555555.8899999*******************************************************5555566666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2089.74
//
Query:       CCG92406.1  [L=420]
Description: Tetraacyldisaccharide-1-P 4'-kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-86  287.8   0.0    5.7e-85  285.3   0.0    1.8  1  LpxK      Tetraacyldisaccharide-1-P 4'-kinase
  ------ inclusion threshold ------
      0.042   12.8   0.2      0.072   12.1   0.2    1.3  1  MeaB      Methylmalonyl Co-A mutase-associated GTPase MeaB
      0.047   13.3   0.1        1.5    8.4   0.0    2.2  2  cobW      CobW/HypB/UreG, nucleotide-binding domain
      0.056   13.5   0.4       0.14   12.2   0.4    1.6  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
       0.41   10.5   1.2       0.61   10.0   0.5    1.6  2  AAA_31    AAA domain


Domain annotation for each model (and alignments):
>> LpxK  Tetraacyldisaccharide-1-P 4'-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.3   0.0   1.6e-88   5.7e-85       2     324 ..      29     381 ..      28     384 .. 0.86

  Alignments for each domain:
  == domain 1  score: 285.3 bits;  conditional E-value: 1.6e-88
                 GGGGHHHHHHHHHHHHHHHHHHHTTSS--B--SS-EEEEEESBSS-HSHHHHHHHHHHHTTTS..-EEEEE--TSSSS-...............S.EEE CS
        LpxK   2 allLlplsllyglvvalrralyragllkserlpvpVivVGNitvGGtGKTPlvialvkllqarglkvgvlSRGYggksk...............gapvl 85 
                 +++L  ls+ly+ +v+lr +ly++ l++s++l++ Vi+VGN+tvGGtGKTP+v+ l+k l+++g kv++lSRGY++                    p++
  CCG92406.1  29 RWFLSFLSWLYNPIVRLRVWLYKKRLFQSHELGCLVISVGNLTVGGTGKTPVVEKLAKDLASAGRKVAILSRGYKSIPPplwqriisafkkdkeFIPRI 127
                 79************************************************************************9854422222222222111134666 PP

                 EEETT....-HHHH-HHHHHHHHHST.SEEEEESSHHHHHHHHHHHC--SEEEEET-SS-TTB--SEEEEEE..EHHHHC--BTTTSSBSS-GGGGGG- CS
        LpxK  86 vsaes....saaevGDEplllarrtg.vpvvVgsdRvaaarallakaeldviilDDGlQhyaLardleivvvdaergfgngrllPaGpLREplsrlkra 179
                 vs+++    ++++ GDEp++la++++ v+v+ g++Rv++   +++++++d++ilDDG+Q + L+  l+iv++d e +fgn++llP+G LREp ++lkra
  CCG92406.1 128 VSDGQkiylDPKHSGDEPYMLAKNLKgVAVITGKNRVKSGLWAIRNMQVDILILDDGFQYLPLKERLDIVLIDREAPFGNRHLLPRGMLREPKDHLKRA 226
                 666669********************************************************************************************* PP

                 SEEEE..........-TTTS....SSS-EEEEEEEE.EETTS-EE-GGG...GTTS-EEEEESSTTHHHHHHHHHHHT--EEEEEEE-TT---TT.... CS
        LpxK 180 dlvilngakaeeeeaekaee....ksipvlrmrlepkklallaaaeeea...lagkkvlavaGignPerFfktLealglevvetlafpDHhaftaedle 271
                 dl+ +++++ ++ +  k+e      + p++++ ++pk+l ++ ++++e+   l+g kv a++Gi++Pe+F k L++lg+e+v ++ f+DHh ft++++ 
  CCG92406.1 227 DLIFITKCDGSDLSSLKTEVrkfnGHAPIIECVHKPKYLFQIITRKKEPlefLKGLKVSAISGIAQPESFEKGLKKLGAEIVYSKYFADHHWFTEQEII 325
                 **9997777766665444335677899999******99966666666555679********************************************99 PP

                 ....----TT.-EEEE-HHHHTTSTT........EEEEEEEEEE...HHHHHHHHHG CS
        LpxK 272 eleeeakelg.allvtTeKDavklaalakenklelwvlpveael...eealeeallk 324
                 ++ e++k+++ + ++tTeKDav+++   ++  l +++l+ve+e+   +ea++++l +
  CCG92406.1 326 RFMERSKARNaKAVITTEKDAVRIPT-CRPFLLPFFFLRVEIEMlngKEAFQSTLFD 381
                 888887777769999*********96.455546699999999998888888887765 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2     2e-05     0.072      32      64 ..      67      99 ..      57     104 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2e-05
                EEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEE CS
        MeaB 32 vGltGvPGaGkstlvealglelrrrGkrvavla 64
                vG   v G+Gk  +ve+l+  l+++G++va+l+
  CCG92406.1 67 VGNLTVGGTGKTPVVEKLAKDLASAGRKVAILS 99
                6667789************************85 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.026        95      10      32 ..      74      98 ..      66     105 .. 0.88
   2 ?    8.4   0.0   0.00041       1.5     134     176 ..     218     256 ..     190     257 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.026
                TCCHHHHHHHHH..CT--SS-EEEE CS
        cobW 10 GsGKTtLlnhll..enraglklavi 32
                G+GKT ++++l     +ag+k+a++
  CCG92406.1 74 GTGKTPVVEKLAkdLASAGRKVAIL 98
                99**********8878899999997 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00041
                 HHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHHHHHHTTS-EE CS
        cobW 134 kaedqlaaadllvlnKtDlldeeallekleerlrqlnpeakvl 176
                 + +d+l+ adl+ ++K+D  d +    +l++++r++n +a+++
  CCG92406.1 218 EPKDHLKRADLIFITKCDGSDLS----SLKTEVRKFNGHAPII 256
                 56899*************87655....6799999999999987 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4     4e-05      0.14       7      32 ..      72      97 ..      69     101 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4e-05
                STTSSHHHHHHHHHHHHHHTT--EEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  7 kGGvGKTtlaanLaralarrglrVll 32
                 GG+GKT ++ +La+ la +g++V+ 
  CCG92406.1 72 VGGTGKTPVVEKLAKDLASAGRKVAI 97
                59**********************86 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.5   0.00017      0.61       3      34 ..      64      96 ..      62      99 .. 0.88
   2 ?   -3.4   0.0       2.2     8e+03     114     124 ..     190     200 ..     184     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00017
      AAA_31  3 vIaianqK.GGvGKTTtsvnlaaalaklgkkvL 34
                vI++ n   GG GKT  + +la+ la++g kv 
  CCG92406.1 64 VISVGNLTvGGTGKTPVVEKLAKDLASAGRKVA 96
                789999644**********************96 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.2
      AAA_31 114 vkdeYDyiiiD 124
                 +k++ D+++iD
  CCG92406.1 190 LKERLDIVLID 200
                 78999*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2751.47
//
Query:       CCG92407.1  [L=341]
Description: ADP-heptose:LPS heptosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-30  106.8   0.0    1.5e-30  106.4   0.0    1.1  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe
  ------ inclusion threshold ------
      0.044   13.6   0.0      0.072   12.9   0.0    1.2  1  UPF0254         Uncharacterised protein family (UPF0254)


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   1.6e-34   1.5e-30       6     245 ..      80     310 ..      75     313 .. 0.88

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 1.6e-34
                     HHTTT.TT-SEEEE-S--SGGGHHHHHTT-SEEEEE-TTT-.TTT-TEEE---TTT.--SHHHHHHHTT.S-GGGS-SS---------HHHHHHH CS
  Glyco_transf_9   6 kaLre.kayDlvidlqgllkSAllvralkapvriGldeesrelaslfysrkvdkak.gqhaVernraLf.aqaldlpkpeskpelalslkeraaa 97 
                     ++Lr+ k+  +++  + +++ Al  + +++p  +G+ +      s+f+++++ ++k +++  +  ++Lf +qal+ +++ s p l+l ++ r+ +
      CCG92407.1  80 RKLRKkKDIQMAVLFTRSFRTALECKLAGIPSVVGYGRTDQ---SIFLDKRIVIPKsKEPWHQAKTYLFfSQALGAKADLSLPPLQLPNHWRKTS 171
                     4555414577899999*********************9999...99999999999987887777777761566****999999888888877766 PP

                     HHHTT--SSS-EEEEE---TT.GGGS--HHHHHHHHHHHHHT.T-EEEE---GGGHHHHHHTTS-HHHHTTEEE-TTTS-HHHHHHHHHTSSEEE CS
  Glyco_transf_9  98 ldaagllaerpyivflpgask.daKrWpeekyaelaealqek.gyqvvLfgsaeaeeeeiaeriaagleekavnllgktsLeelaallakadlvv 190
                        +        + ++pga++ +aKrW  +++a + ++l+ek g+ + ++g++++  +   e+++++l  +a nl gkt+L+ + + ++   l +
      CCG92407.1 172 SPLI--------VSVCPGAEYgPAKRWFPSHFAWVCRKLKEKyGCHIQILGGEKD--RLPCEQLKKELP-EAENLSGKTTLAVFFEKIFSSHLLL 255
                     5555........68*************************99857***********..667777888877.788********************** PP

                     EESSHHHHHHHHTT--EEEEESSS-TTSS----TTEEEEESS--.---------- CS
  Glyco_transf_9 191 gnDSGlmHlAaAldrpviaLYgptdpkrtgplsksativsleeeaspelkkedsl 245
                     +nDSG mH+   l++p++a++g+tdp++t+p++   +i+  +  +sp++ ++++ 
      CCG92407.1 256 CNDSGAMHVGSLLQTPTVAIFGSTDPQKTAPIGGHCRIIYEKVDCSPCFLRKCPI 310
                     *************************************************999986 PP

>> UPF0254  Uncharacterised protein family (UPF0254)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     8e-06     0.072      58     130 ..      63     133 ..      53     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8e-06
                 HHHHHT------..SSESSSEE-BHHHHHHHHHHHHHHHHHHHT-SE.EEEEE-SEES-EEEEE-SS-EEEE-- CS
     UPF0254  58 vksllkielPlepkelikgiKvYneeeDkevallmakavkkitnadi.gigttAGiGrGaiaivtdkkelltts 130
                 v ++l++    + k+++++++  ++++D ++a+l++++ +  +++ + gi +  G Gr   +i  dk+ ++ +s
  CCG92407.1  63 VDEILEMT---NSKNIFENVRKLRKKKDIQMAVLFTRSFRTALECKLaGIPSVVGYGRTDQSIFLDKRIVIPKS 133
                 56777777...456789999999***********************846*********9999998888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2215.87
//
Query:       CCG92408.1  [L=544]
Description: putative Uncharacterized membrane protein,virulence factor [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.1e-101  338.2  37.9   8.3e-101  337.8  37.9    1.2  1  MurJ             Lipid II flippase MurJ
    1.2e-11   44.8  18.4    1.2e-11   44.8  18.4    4.4  4  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai
    3.7e-08   32.9   0.1    3.7e-08   32.9   0.1    2.7  3  Polysacc_synt_3  Polysaccharide biosynthesis protein
      1e-06   28.5   4.9      1e-06   28.5   4.9    3.9  3  MatE             MatE


Domain annotation for each model (and alignments):
>> MurJ  Lipid II flippase MurJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.8  37.9  1.9e-104  8.3e-101       1     438 [.      37     488 ..      37     521 .. 0.94

  Alignments for each domain:
  == domain 1  score: 337.8 bits;  conditional E-value: 1.9e-104
        MurJ   1 iaallGaglladaFnvAfklPnllrrlfaegalssaFvPvlaeak.kkdeekaaefvrkvltllilvlllvtligilaapllirllatgf..deetlel 96 
                 +a+l+Gag+l daF  Af++Pnllr lfaegals aF  v+++    + +++a  ++++++ l++++ll + ++gil+ap+l++++  gf   + ++el
  CCG92408.1  37 FASLFGAGTLLDAFLAAFQIPNLLRDLFAEGALSTAFTTVFSKTVeLEGNKRAFMLANRLFSLFFIFLLFLSFLGILLAPILVEITNFGFhkIPGKFEL 135
                 599******************************************667777788899*********************************77788**** PP

        MurJ  97 avsllrillpylllvslsavfgavLnarkkFfapafsPvllNvsvIltllllanklgeeail...........aLaiGvliGgvlqllvqlpalkkagl 184
                 +v+l+ri++p++l+vsl+a+++++Lna++ F++pa + + +N++ I++ +l+a  ++ +++            ++++Gvl+Gg++ql +q++a  k+g+
  CCG92408.1 136 TVQLTRIMFPFILFVSLAALVMGLLNAYHIFGLPASASSAFNLTSIFFGVLFAFLFDPQKDPfhphfgppslyGISLGVLMGGLVQLCIQFFAFPKIGF 234
                 **********************************************9999988888844444789999999888************************* PP

        MurJ 185 llkprfafrdeglkkflklllptllgvsvsqlnllvdtalAsflaegsvsilayadrilqlPlglfgvsistvlLPrlSrsakekdedevrdllsqair 283
                 + +  ++ rd++l ++ +ll pt+++ ++ q+n l++ ++As  + g+ s+l+ a r++qlP+g+fgv+i+tv LP++Sr  +++d +++ ++l+ ++r
  CCG92408.1 235 QYSWELNARDPKLLEIWNLLWPTMIAGAAIQVNVLINGMFAS-EINGARSWLNCAFRLMQLPIGIFGVAIATVTLPSVSRQDARNDRKAFGQTLESSLR 332
                 ******************************************.7789**************************************************** PP

        MurJ 284 ltllllipvsfgllvlskpivsllferGnFseedveataevLaayalgLipyalvklllrvfYAredtktPvkislislvlnillsllll..pplgvvg 380
                 l ++l++p+++gl++ls++i+ l++++G F ++d+ +ta++L+ayalgL  ya +k++ + f A +  + P+ ++li + +n++ +++l+  +++g+vg
  CCG92408.1 333 LAFFLTLPAAMGLIFLSDQIIALIYQHGRFLHSDTIQTAYALKAYALGLTGYAGIKVINPCFSALNKPQIPLRVTLIGIGINLVSNFILVklFSFGHVG 431
                 **************************************************************************************6665116789*** PP

        MurJ 381 lalatslsaliglvllyvllrkrlklteargiktflaklvvllalaavvilllssltq 438
                 lal tsl++l++++ l++l+ k  ++  ++ +++f+ k ++l+al ++  +l+++l  
  CCG92408.1 432 LALTTSLVSLLNFLQLFYLIGKYIEFGRFKNWLFFVFK-IGLCALCCGGSALFIALQL 488
                 **************************************.9999999888777777655 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.4      0.61   2.7e+03      22      51 ..      28      57 ..      15      79 .. 0.52
   2 ?    2.2  12.9     0.039   1.7e+02      42     130 ..      94     188 ..      89     191 .. 0.74
   3 ?    1.5   4.6     0.061   2.7e+02      49     120 ..     198     288 ..     197     309 .. 0.60
   4 !   44.8  18.4   2.8e-15   1.2e-11       2     140 ..     374     520 ..     373     523 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.61
  Polysacc_synt_C 22 Lqglgrqkialkalvigalvklilnlllip 51
                     L gl r+ i++  + +g l+   l  + ip
       CCG92408.1 28 LLGLARELIFASLFGAGTLLDAFLAAFQIP 57
                     444444444444444444455555544444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.039
  Polysacc_synt_C  42 klilnllli..plfgivGaaiatvlallvvavlnlyalrrllgikl..ellrrllkpllaalvmgiv.vylllllllgllllaal.alllavlv 129
                      + +++l++i   +++ +G+++a +l +++ + ++ +  + +l ++l   ++  +l + laalvmg++ +y+++ l  ++++  +l +++++vl+
       CCG92408.1  94 NRLFSLFFIflLFLSFLGILLAPILVEITNFGFHKIPGKFELTVQLtrIMFPFILFVSLAALVMGLLnAYHIFGLPASASSAFNLtSIFFGVLF 187
                      5555555553356688******************9999999999998844777779999999***99777777777766666666666666644 PP

  Polysacc_synt_C 130 g 130
                      +
       CCG92408.1 188 A 188
                      4 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.061
  Polysacc_synt_C  49 liplfgi...vGaaiatvlallvvavlnlyalrrllgikl............ellrrllkpllaalvmgivvylllllllglllla......a 120
                      + p+fg    +G++++ + + lv ++++++a  + +g+++            e+++ l+ +++a++++ + v+ ++ ++ + +++a      a
       CCG92408.1 198 FHPHFGPpslYGISLGVLMGGLVQLCIQFFAFPK-IGFQYswelnardpkllEIWNLLWPTMIAGAAIQVNVL-INGMFASEINGArswlncA 288
                      55888744449*****************999998.55555558899997666555556666666666555544.3333333332225555541 PP

  == domain 4  score: 44.8 bits;  conditional E-value: 2.8e-15
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllli..plfgivGaaiatvlallvvavlnlyalrrllgikl..ellrrl 91 
                      L  +al++  ++ + v +  + +l++++i+l++++ig+ ++l+ n++l+   +fg vG a+ t l  l+ ++ ++y++ +++ +    ++l  +
       CCG92408.1 374 LKAYALGLTGYAGIKVINPCFSALNKPQIPLRVTLIGIGINLVSNFILVklFSFGHVGLALTTSLVSLLNFLQLFYLIGKYIEFGRfkNWLFFV 467
                      7788999999999999*********************************777889******************************966666666 PP

  Polysacc_synt_C  92 lkpllaalvmgivvylllllllglllla...al.alllavlvgalvYllllll 140
                      +k+ l+al++g+ +++++l+l   l  +   +l ++ll++++++l+Y++ ++ 
       CCG92408.1 468 FKIGLCALCCGGSALFIALQLQHKLGQSflsLLiSTLLSIGFAILIYFFSTVG 520
                      6**********996655555544444336653359999*********998775 PP

>> Polysacc_synt_3  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.4       0.8   3.6e+03     123     129 ..     152     158 ..     133     188 .. 0.57
   2 !   32.9   0.1   8.3e-12   3.7e-08     213     284 ..     284     357 ..     205     360 .. 0.75
   3 ?   -3.6   2.2       1.1     5e+03     135     159 ..     492     516 ..     425     520 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.8
  Polysacc_synt_3 123 vvgviva 129
                      +++++++
       CCG92408.1 152 LAALVMG 158
                      2223333 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 8.3e-12
  Polysacc_synt_3 213 lYsvakrlaslpvaeitsviakVlfPalSr..lqddkkklrelylkvlrlialivlPiavglavvaellvkvll 284
                        + a rl++lp+ ++  +ia+V++P++Sr   ++d+k++ ++++ +lrl  +++lP+a+gl+++++ ++ +++
       CCG92408.1 284 WLNCAFRLMQLPIGIFGVAIATVTLPSVSRqdARNDRKAFGQTLESSLRLAFFLTLPAAMGLIFLSDQIIALIY 357
                      56789************************85579**************************************98 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 1.1
  Polysacc_synt_3 135 lglgvwALvigtllssllslvllwl 159
                      lg +  +L+i+tlls  + ++++++
       CCG92408.1 492 LGQSFLSLLISTLLSIGFAILIYFF 516
                      4567777777777777766666655 PP

>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8  11.8    0.0088        39      47     160 ..      68     185 ..      19     186 .. 0.76
   2 !   28.5   4.9   2.3e-10     1e-06      40     161 .]     295     420 ..     256     420 .. 0.91
   3 ?    3.2   0.9     0.014        64      73      95 ..     496     518 ..     490     523 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0088
        MatE  47 glstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilsl....ftqdeevlelakrylrililgipalalqlvlsgilrgagkt 141
                 +lsta tt+ ++ +  +  kra   +++ + l +++ l++++l++l++++++ +    f++ +   el+ ++ ri++++i++ +l  +  g l+++ ++
  CCG92408.1  68 ALSTAFTTVFSKTVELEGNKRAFMLANRLFSLFFIFLLFLSFLGILLAPILVEItnfgFHKIPGKFELTVQLTRIMFPFILFVSLAALVMGLLNAYHIF 166
                 4788889998888865555555555566666666666666666666666665553333888888**********************************9 PP

        MatE 142 kvplyislislllniplny 160
                  +p+ +s + +l  i +++
  CCG92408.1 167 GLPASASSAFNLTSIFFGV 185
                 9999988776688887765 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 2.3e-10
        MatE  40 llfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilslftqdee....vlelakrylrililgipalalqlvlsgi 134
                 ++++f+++++t + + v+++   +++k+++++l  +l l+++l l++a+ ++++s+qi+ l+ q+       + +++  l++++lg+ ++a   v++  
  CCG92408.1 295 PIGIFGVAIATVTLPSVSRQDARNDRKAFGQTLESSLRLAFFLTLPAAMGLIFLSDQIIALIYQHGRflhsDTIQTAYALKAYALGLTGYAGIKVINPC 393
                 3566888899999999***************************************************765544478889******************** PP

        MatE 135 lrgagktkvplyislislllniplnyl 161
                 + +  k+ +pl ++li++ +n++ n++
  CCG92408.1 394 FSALNKPQIPLRVTLIGIGINLVSNFI 420
                 ***********************9986 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.014
        MatE  73 rqglilllllsliiallvllfse 95 
                 + +l++++lls+ +a+l+++fs 
  CCG92408.1 496 FLSLLISTLLSIGFAILIYFFST 518
                 56899999*********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.58
# Mc/sec: 2823.65
//
Query:       CCG92409.1  [L=316]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-05   25.1   7.1      1e-05   25.1   7.1    2.5  1  DUF3552          Domain of unknown function (DUF3552)
    0.00019   21.5   5.5    0.00019   21.5   5.5    1.8  2  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
    0.00028   20.3   6.3    0.00028   20.3   6.3    3.1  4  HemX             HemX, putative uroporphyrinogen-III C-methyl
     0.0015   17.2  26.5      0.002   16.8  26.5    1.1  1  Macoilin         Macoilin family
     0.0084   16.1   6.6     0.0084   16.1   6.6    3.3  4  DUF1664          Protein of unknown function (DUF1664)
  ------ inclusion threshold ------
      0.024   14.7  14.4      0.024   14.7  14.4    3.6  3  ADIP             Afadin- and alpha -actinin-Binding
       0.04   14.1   2.1      0.061   13.5   0.1    2.3  2  DUF2852          Protein of unknown function (DUF2852)
      0.042   13.9   0.2      0.042   13.9   0.2    3.1  3  Halogen_Hydrol   5-bromo-4-chloroindolyl phosphate hydrolysis
      0.042   14.5   4.8      0.042   14.5   4.8    3.8  3  SlyX             SlyX
      0.061   13.4   3.7        0.1   12.7   0.0    2.5  2  Podoplanin       Podoplanin
      0.085   12.7   0.0       0.16   11.8   0.0    1.4  1  Nucleos_tra2_C   Na+ dependent nucleoside transporter C-termi
      0.087   12.4  23.8      0.023   14.3  12.1    2.1  2  Exonuc_VII_L     Exonuclease VII, large subunit
       0.12   12.8  17.6       0.11   13.0   2.3    4.1  4  NPV_P10          Nucleopolyhedrovirus P10 protein
       0.16   12.0   4.4      0.079   13.1   1.1    2.3  2  DUF2730          Protein of unknown function (DUF2730)
       0.21   10.2   3.8       0.36    9.4   3.8    1.3  1  Tweety           Tweety
       0.24   10.5   4.2       0.68    9.0   4.2    1.7  1  AI-2E_transport  AI-2E family transporter
       0.35   10.5   7.5          5    6.8   0.5    2.9  2  Nbl1_Borealin_N  Nbl1 / Borealin N terminal
        0.4   11.0   9.6        0.1   12.9   3.4    2.9  3  Rx_N             Rx N-terminal domain
       0.42   11.3   2.5        1.4    9.6   2.0    2.3  1  FOXP-CC          FOXP coiled-coil domain
       0.49   10.7   6.4         14    6.0   6.4    2.7  1  WXG100           Proteins of 100 residues with WXG
       0.52   10.3   3.6         15    5.6   0.1    2.4  2  T2SSF            Type II secretion system (T2SS), protein F
        1.1    8.6   6.0        2.1    7.7   6.0    1.4  1  YjcZ             YjcZ-like protein
        1.2    8.7   5.1       0.81    9.2   0.5    2.5  2  E1-E2_ATPase     E1-E2 ATPase
        1.9    8.4   6.0       0.85    9.6   2.5    2.4  1  ApoO             Apolipoprotein O
        2.3    8.7  10.5        4.7    7.7   7.7    2.7  1  MitMem_reg       Maintenance of mitochondrial structure and f
        2.3    8.5   9.6          2    8.7   1.6    3.4  3  DUF4806          Domain of unknown function (DUF4806)
        3.4    7.8  18.0        5.2    7.3   1.1    4.2  4  MetOD2           Metanogen output domain 2
        4.5    7.6   6.6        5.5    7.3   4.1    2.5  1  DUF948           Bacterial protein of unknown function (DUF94
        5.1    6.6   7.8        0.6    9.6   1.1    2.6  2  SieB             Super-infection exclusion protein B
        5.1    5.9   9.2       0.26   10.2   2.8    2.0  2  CSG2             Ceramide synthase regulator
        7.9    6.8  17.7        4.9    7.4   3.5    4.1  4  XhlA             Haemolysin XhlA


Domain annotation for each model (and alignments):
>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   7.1   1.8e-08     1e-05       5     138 ..     170     307 ..     166     311 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.8e-08
     DUF3552   5 laivalvvglvvgylvrkkiaekk..iaeAeee.AkkiieeAkkeAeakkkealleak.eeihklreelekelkerrnelqrlekRllqkeetLdrkee 99 
                 +  ++++++++ g+++ kki+++   i++  ++  ++i   A + +++ k+   le+  ++ih + +++ekel + +++++ le +l ++ ++L++  +
  CCG92409.1 170 FFSIVIILAVYGGMVIFKKIHAQDslITDVDRKvNNRIERMASQVSKQEKDIEELETSlNQIHSYLTDTEKELSKTKDQIETLESKLTNQSQSLQQIAS 268
                 5567888999999999999998862244544441556777899999999998888765499************************************** PP

     DUF3552 100 slekkeesleekekelkqkeqsleekeeeleelveeqrq 138
                 +l++  ++   +e+ l ++ + lee++++ ++  ++ ++
  CCG92409.1 269 DLKQEKQNRIIREEALLKRVSLLEETQKQNKNYPKKTKS 307
                 ***999999999999999999999999998887777665 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       6.3   3.6e+03      87      97 ..      45      55 ..      28      75 .. 0.62
   2 !   21.5   5.5   3.2e-07   0.00019      38     127 ..     194     282 ..     185     292 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 6.3
  Baculo_PEP_C 87 LtnlnsiltnL 97
                  L+ l+s+l nL
    CCG92409.1 45 LNFLESKLENL 55
                  33333333333 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 3.2e-07
  Baculo_PEP_C  38 tlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq...dtlrneLtnlnsiltnLlssvtNinstLnnllqalnnldlgalsqel 127
                   +l++++++++n+  e++ s +++++++++    +L+++ln++    ++ ++eL  ++ ++ +L s++tN  ++L+ + ++l+  +++ +  e 
    CCG92409.1 194 SLITDVDRKVNNRIERMASQVSKQEKDIE----ELETSLNQIHsylTDTEKELSKTKDQIETLESKLTNQSQSLQQIASDLKQEKQNRIIREE 282
                   34455555555544444444444444555....555555555555556799******************************999988887665 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   5.1       2.6   1.5e+03      47     111 ..      17      84 ..       3      98 .. 0.44
   2 ?   -3.2   0.5       6.6   3.8e+03      67      87 ..     138     151 ..     105     160 .. 0.40
   3 !   20.3   6.3   4.9e-07   0.00028      10     101 ..     171     261 ..     166     287 .. 0.63
   4 ?   -0.5   3.9         1   5.8e+02      40      87 ..     256     303 ..     254     312 .. 0.51

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.6
        HemX  47 leqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqq...lskvsgaerkdWlLae 111
                  ++q+++ +++k q q +  +     ++l+ le++le+l++  + l++q    s+++ +++++ +L++
  CCG92409.1  17 SKKQVSKRAKQKDQSQSFLLESTSPLTDLNFLESKLENLKEPASPLESQasqTSNIETEKKTEQRLSD 84 
                 44444443333333333333333333344444444444443333333330003333333444455544 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.6
        HemX  67 rlqqlaeklealekeleqlqk 87 
                  ++       +l+k++e+++k
  CCG92409.1 138 PVN-------HLKKTIEKQSK 151
                 222.......22222222222 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 4.9e-07
        HemX  10 lallvalavgaglyylgqqqvqeltaev..aelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlskvsg 101
                   +++ lav +g++ +++  +q+   +    +++++++ + +q+++   ++++ +ele++l+q ++ l ++ekel++++ q+e+l+++l++ s 
  CCG92409.1 171 FSIVIILAVYGGMVIFKKIHAQDSLITDvdRKVNNRIERMASQVSK---QEKDIEELETSLNQIHSYLTDTEKELSKTKDQIETLESKLTNQSQ 261
                 6799********9999998875554444466666666666666555...555666666666666666666666666666666666666655332 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1
        HemX  40 lqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqk 87 
                 l +q ++l+q ++ +++ek++    ee+l +  + le+++k+++++ k
  CCG92409.1 256 LTNQSQSLQQIASDLKQEKQNRIIREEALLKRVSLLEETQKQNKNYPK 303
                 455555666666554444444444445555555555555555554444 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8  26.5   3.5e-06     0.002     267     523 ..      15     304 ..       2     313 .. 0.51

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.5e-06
    Macoilin 267 sdskkkhehnesvdsklqekeym.enkskskrlsksessgsesellveesvkskss..ssssssnknskkasagsagssnssskkhsessksv.tssss 361
                 + skk+   +++ ++k q+++++ e++s  + l+    +++ ++l+   s  ++++  +s+ +++k++++  ++s g+ ++ sk++++    + +ssss
  CCG92409.1  15 ARSKKQ--VSKRAKQKDQSQSFLlESTSPLTDLNFL--ESKLENLKEPASPLESQAsqTSNIETEKKTEQRLSDSNGIEENPSKQKEAPLFIPpASSSS 109
                 222222..1222333333333321333333333322..2222333222222222210022222334444444444444444444444433333033334 PP

    Macoilin 362 sknskkqklpaGkssaalkdaaenslpnnql..........skkda...........................lvrLeadikkLkaeLqasrqteqelr 423
                 ++n+++q++ +  s  ++k +++n ++++ +          s   +                           +       kk++a+ +    ++++++
  CCG92409.1 110 ENNEERQNT-TNSSYPKHKTPMNNPVSSSPVnhlkktiekqS---KeqrsiqniltvflvgfifffsiviilaVYGGMVIFKKIHAQDSLITDVDRKVN 204
                 444444444.34444466667776666555533344433331...034455666666666666666666543222333345788888888888888888 PP

    Macoilin 424 skissltseerslkselqqlkkendllqtklhelvsakqkdkqtlqqlekrLkeekearaslekqLaeekkrkkeeeetaaravalaaasrsecteslk 522
                 ++i+ ++s+     +++++l+   +++ + l +  ++  k k ++++le +L ++ ++ +++ + L++ek+++   ee   + v+l   ++++  +  k
  CCG92409.1 205 NRIERMASQVSKQEKDIEELETSLNQIHSYLTDTEKELSKTKDQIETLESKLTNQSQSLQQIASDLKQEKQNRIIREEALLKRVSLLEETQKQNKNYPK 303
                 888888887777778888888888888888888888888888888888888888888888888888888888876666655556666666555555555 PP

    Macoilin 523 s 523
                 +
  CCG92409.1 304 K 304
                 5 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2       4.1   2.4e+03      61     100 ..      18      56 ..       9      78 .. 0.51
   2 ?   -0.8   0.0       2.6   1.5e+03      68      88 ..     139     159 ..     135     164 .. 0.67
   3 !   16.1   6.6   1.4e-05    0.0084      49     119 ..     188     258 ..     183     262 .. 0.91
   4 ?    0.6   1.5      0.93   5.4e+02      47      87 ..     260     307 ..     257     314 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4.1
     DUF1664  61 krhLssridrvdkkldeqkeiskeikeevtevredlseig 100
                 k++ s+r ++ d+++    e ++ +  +++ ++++l++++
  CCG92409.1  18 KKQVSKRAKQKDQSQSFLLESTSPL-TDLNFLESKLENLK 56 
                 5555555555544444433333322.23333333333333 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.6
     DUF1664  68 idrvdkkldeqkeiskeikee 88 
                 ++++ k++++q++ +++i++ 
  CCG92409.1 139 VNHLKKTIEKQSKEQRSIQNI 159
                 667777777777777777664 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 1.4e-05
     DUF1664  49 qleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskler 119
                 ++    + ++++ r+ ++ri+r+ +++ +q++ ++e++  ++++++ l+++++++++ k+ +e+leskl++
  CCG92409.1 188 KIHAQDSLITDVDRKVNNRIERMASQVSKQEKDIEELETSLNQIHSYLTDTEKELSKTKDQIETLESKLTN 258
                 5566667789999*******************************************************975 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.93
     DUF1664  47 skqleqvseslaatkrh.......Lssridrvdkkldeqkeiskeike 87 
                 s++l+q+ ++l++ k++       L +r+  ++++++++k+  k++k+
  CCG92409.1 260 SQSLQQIASDLKQEKQNriireeaLLKRVSLLEETQKQNKNYPKKTKS 307
                 455555555555555431111112777888888888777777777765 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   6.7       7.7   4.4e+03      50     103 ..      26      79 ..      10      96 .. 0.58
   2 ?   -1.2   0.2       3.3   1.9e+03      71      81 ..     141     151 ..     107     164 .. 0.58
   3 ?   14.7  14.4   4.2e-05     0.024      57     130 ..     202     275 ..     194     280 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7.7
        ADIP  50 rdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekk 103
                 + ++q +s+  +  +  +++  l+sk e lk+  + le+++++  + e++ +++
  CCG92409.1  26 KQKDQSQSFLLESTSPLTDLNFLESKLENLKEPASPLESQASQTSNIETEKKTE 79 
                 444444455555555556666666666666666666666666444433333333 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.3
        ADIP  71 rlqskierlkt 81 
                 +l+++ie+ ++
  CCG92409.1 141 HLKKTIEKQSK 151
                 33333333332 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 4.2e-05
        ADIP  57 slnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqikt 130
                 ++n +i+++ +  ++++++ie l+t+l q ++ l+  ++++ +++ +++tle+kl n++++lq   ++l+q k+
  CCG92409.1 202 KVNNRIERMASQVSKQEKDIEELETSLNQIHSYLTDTEKELSKTKDQIETLESKLTNQSQSLQQIASDLKQEKQ 275
                 6899999*********************************************************9999999876 PP

>> DUF2852  Protein of unknown function (DUF2852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   0.00011     0.061       9      73 ..     159     225 ..     150     250 .. 0.68
   2 ?   -1.9   0.0       5.9   3.4e+03      53      53 ..     265     265 ..     234     304 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00011
     DUF2852   9 eialivlgfilfWPlglallay..llwskrlaaak....aakeeveekvkelfskakrereaaraskraaa 73 
                  +++ ++gfi+f  + ++l +y  +++ k+++a++      +++v+++++++ s+++++++      ++ +
  CCG92409.1 159 ILTVFLVGFIFFFSIVIILAVYggMVIFKKIHAQDslitDVDRKVNNRIERMASQVSKQEK----DIEELE 225
                 578899**********999999666778999888844444455555555555555555554....333333 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5.9
     DUF2852  53 e 53 
                 +
  CCG92409.1 265 Q 265
                 1 PP

>> Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.7       1.7   9.7e+02      44      97 ..      26      79 ..      12      94 .. 0.78
   2 ?   13.9   0.2   7.2e-05     0.042      16      89 ..     159     233 ..     155     236 .. 0.70
   3 ?    1.8   2.5      0.36   2.1e+02     150     177 ..     237     264 ..     234     272 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.7
  Halogen_Hydrol 44 srknkkkkhlkksglsrkelkyiretlkeakekikrlekalkrvrslevikqvr 97
                    ++k++++++l +s    ++l+++++ l+  ke  + le +  +  ++e+ k+ +
      CCG92409.1 26 KQKDQSQSFLLESTSPLTDLNFLESKLENLKEPASPLESQASQTSNIETEKKTE 79
                    446667777777666667999999999999999999999999999999887765 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 7.2e-05
  Halogen_Hydrol  16 lvsffllgfsfflallia..ilggilvyvasrknkkkkhlkksglsrk...elkyiretlkeakekikrlekalkrvrs 89 
                     ++++fl gf ff++++i+  + gg++++  +   ++ +++   +++rk    ++ +++++++ +++i++le++l+++ s
      CCG92409.1 159 ILTVFLVGFIFFFSIVIIlaVYGGMVIFKKIH--AQDSLI--TDVDRKvnnRIERMASQVSKQEKDIEELETSLNQIHS 233
                     45677788888999666633555555555555..444444..4566666668899999*************99999976 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.36
  Halogen_Hydrol 150 etrealeetrqlLdelaealekdlqkll 177
                     +t+++l++t+  +++l+++l+++ q+l 
      CCG92409.1 237 DTEKELSKTKDQIETLESKLTNQSQSLQ 264
                     7889999999999****99999999875 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       3.8   2.2e+03      36      53 ..      48      65 ..      43      99 .. 0.61
   2 ?   14.5   4.8   7.3e-05     0.042       2      55 ..     204     257 ..     203     262 .. 0.92
   3 ?    5.0   6.0     0.064        37       9      43 ..     239     273 ..     231     310 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 3.8
                HHHHHHHHHHT-XXXXXX CS
        SlyX 36 lqrqlrllaerlkelees 53
                l+ +l+ l+e  + le++
  CCG92409.1 48 LESKLENLKEPASPLESQ 65
                344444444444333333 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 7.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX   2 eerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessg 55 
                 ++r+e++ ++++ qe+ ieeL   + + +  ++  +++l + ++++++le++  
  CCG92409.1 204 NNRIERMASQVSKQEKDIEELETSLNQIHSYLTDTEKELSKTKDQIETLESKLT 257
                 68***********************************************99865 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.064
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX   9 EiklafqedtieeLndvvaeqqqqidrlqrqlrll 43 
                 E +l+ + d+ie+L   +++q q ++++   l++ 
  CCG92409.1 239 EKELSKTKDQIETLESKLTNQSQSLQQIASDLKQE 273
                 55556666666666666666666666665555543 PP

>> Podoplanin  Podoplanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00017       0.1      52     150 ..      85     185 ..      47     194 .. 0.72
   2 ?   -0.5   2.0         2   1.2e+03      57     101 ..     202     246 ..     187     278 .. 0.40

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00017
                 XXXXXXXXXXXXXXXXXXXXXXX-----GGG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXX CS
  Podoplanin  52 ttgaseepyesglttlvptstesvtdlrledlptaestvkakeesqstttlnvvtshstekvgeetettvekdGLatvtLvgiiv..Gvllaigfiggi 148
                  +g  e+p++++ ++l    + s ++++ e + t++s+  ++++  + + ++   +h +++++++ +     + + tv Lvg i    +++ +++ gg+
  CCG92409.1  85 SNGIEENPSKQKEAPLFIPPASSSSENNEERQNTTNSSYPKHKTPMNNPVSSSPVNHLKKTIEKQSKEQRSIQNILTVFLVGFIFffSIVIILAVYGGM 183
                 3456667777788887766778888888888888888888888777777777777777777777777777778999******99533789999999998 PP

                 XX CS
  Podoplanin 149 ii 150
                 +i
  CCG92409.1 184 VI 185
                 76 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2
                 XXXXX.XXXXXXXXXXXXX-----GGG-XXXXXXXXXXXXXXXXXX CS
  Podoplanin  57 eepye.sglttlvptstesvtdlrledlptaestvkakeesqsttt 101
                 + +++ ++++++v+++ + + +l++  ++ + s   + e+  s t 
  CCG92409.1 202 KVNNRiERMASQVSKQEKDIEELETSLNQIH-SYLTDTEKELSKTK 246
                 3333334444444443333333332222221.11111111111111 PP

>> Nucleos_tra2_C  Na+ dependent nucleoside transporter C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00028      0.16     132     175 ..     140     184 ..     119     195 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00028
                     HHHGGGGSSS---HHH.HHHHHHHH-S--STHHHHHHHHHHHHH- CS
  Nucleos_tra2_C 132 qeLsklkkkgelsers.eliatyaLcgFanfssigiqiGglgala 175
                     ++L+k+++k++ ++rs + i+t++L+gF  f si i++++ g+++
      CCG92409.1 140 NHLKKTIEKQSKEQRSiQNILTVFLVGFIFFFSIVIILAVYGGMV 184
                     4566666666666665378***********************998 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   3.8     0.053        31     148     223 ..       9     107 ..       3     173 .. 0.48
   2 ?   14.3  12.1   3.9e-05     0.023     148     255 ..     198     304 ..     182     312 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.053
  Exonuc_VII_L 148 qleelerrlekaikrlleekkqrleklasrl.k.speellerkrqrldeleerleralkkq..lkkkrerleelkerlk.................. 222
                   +l++ ++r +k+++++ ++k q  + l ++  + +  + le+k ++l+e ++ le++ +++  +++++++ ++l+++                    
    CCG92409.1   9 NLSRKRARSKKQVSKRAKQKDQSQSFLLESTsPlTDLNFLESKLENLKEPASPLESQASQTsnIETEKKTEQRLSDSNGieenpskqkeaplfippa 105
                   5677778888888888887777777665444234555566666666666666666654444344444333333332221222222222222222222 PP

  Exonuc_VII_L 223 .e 223
                    +
    CCG92409.1 106 sS 107
                   20 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 3.9e-05
  Exonuc_VII_L 148 qleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlkekleekkerl...kklkerlel 241
                   ++++  ++  + ++++++++++ +e+l+++l++ ++ l++ +++l+++++++e+ l+++l+++++ l+++++ lk   +ek++r+   ++l +r++l
    CCG92409.1 198 DVDRKVNNRIERMASQVSKQEKDIEELETSLNQIHSYLTDTEKELSKTKDQIET-LESKLTNQSQSLQQIASDLK---QEKQNRIireEALLKRVSL 290
                   333333333344555668888899999999999999999999999999999999.99999999999999997775...3444444444555556667 PP

  Exonuc_VII_L 242 leekkerleeleek 255
                   lee++++ +++ +k
    CCG92409.1 291 LEETQKQNKNYPKK 304
                   77777776666555 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.66   3.8e+02      27      56 ..      45      74 ..      32      88 .. 0.74
   2 ?    0.6   0.0       1.3   7.8e+02      37      58 ..     139     160 ..     132     165 .. 0.66
   3 ?   13.0   2.3   0.00019      0.11      19      68 ..     188     237 ..     183     246 .. 0.55
   4 ?    5.3   2.2     0.049        28      29      58 ..     241     270 ..     237     281 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.66
     NPV_P10 27 vddvqenlpdvtelnekLdaqsaqLaelet 56
                ++ ++++l++++e  + L++q+ q  ++et
  CCG92409.1 45 LNFLESKLENLKEPASPLESQASQTSNIET 74
                445666677777777777777777777776 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.3
     NPV_P10  37 vtelnekLdaqsaqLaeletkv 58 
                 v++l++ +++qs++  ++++ +
  CCG92409.1 139 VNHLKKTIEKQSKEQRSIQNIL 160
                 5666777777777666666654 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 0.00019
     NPV_P10  19 kVdalqqqvddvqenlpd.vtelnekLdaqsaqLaeletkvenIqdiLnpd 68 
                 k+ a ++ ++dv+ ++++ ++ + +++ +q + ++elet++++I++ L+ d
  CCG92409.1 188 KIHAQDSLITDVDRKVNNrIERMASQVSKQEKDIEELETSLNQIHSYLT-D 237
                 4444444455555554433555566666666666666666666666666.2 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.049
     NPV_P10  29 dvqenlpdvtelnekLdaqsaqLaeletkv 58 
                 ++++   +++ l++kL +qs++L+++ + +
  CCG92409.1 241 ELSKTKDQIETLESKLTNQSQSLQQIASDL 270
                 566666778888888888888888887655 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       5.3   3.1e+03      49      76 ..      45      56 ..      19      82 .. 0.61
   2 ?   13.1   1.1   0.00014     0.079      37      91 ..     202     254 ..     167     277 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 5.3
     DUF2730 49 lteletkvenLPtakdlekLkllladlr 76
                l+ le+k+enL                +
  CCG92409.1 45 LNFLESKLENL----------------K 56
                33344444443................3 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00014
     DUF2730  37 klaekveendkrlteletkvenLPtakdlekLkllladlrgelkaleaevrqlsh 91 
                 k+++ +e++ +++++ e  +e+L t   l++++  l+d++ el++++ ++++l+ 
  CCG92409.1 202 KVNNRIERMASQVSKQEKDIEELET--SLNQIHSYLTDTEKELSKTKDQIETLES 254
                 3444444444444555555555433..3444555555555555555555544443 PP

>> Tweety  Tweety
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.8   0.00063      0.36      96     185 ..     187     277 ..     174     291 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00063
      Tweety  96 yslrkanhtlagikklvseteesleekleeeLtkleeifakrtdlletlrlvqeqveevvqqlselp.flkkkdvsltelaeqvelvelyR 185
                 + ++  + +++ ++++v++  e++ ++++++ + +ee+ ++ +++ + l  +++++++  +q++ l+  l +++ sl+++a++ ++  + R
  CCG92409.1 187 KKIHAQDSLITDVDRKVNNRIERMASQVSKQEKDIEELETSLNQIHSYLTDTEKELSKTKDQIETLEsKLTNQSQSLQQIASDLKQEKQNR 277
                 5566778899999*************99999999999999999999999999999999999999999888899999999999888766655 PP

>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.2    0.0012      0.68      48     125 ..     151     235 ..     136     280 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
  AI-2E_transport  48 krvlavllvlllllvllvllvlllvplliaqltqlvkslp.......ayidslqnilnelpslleelenliqalkqslskilsni 125
                      k   ++  +l+++lv +++++ +++ l++ +   ++k++        ++  +++n ++ + s + + e+ i++l+ sl++i s +
       CCG92409.1 151 KEQRSIQNILTVFLVGFIFFFSIVIILAVYGGMVIFKKIHaqdslitDVDRKVNNRIERMASQVSKQEKDIEELETSLNQIHSYL 235
                      5555666677777777777777777778888888888888777666633333333333333333333323444444444443333 PP

>> Nbl1_Borealin_N  Nbl1 / Borealin N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.5    0.0086         5       4      32 ..     194     222 ..     192     226 .. 0.88
   2 ?    6.3   1.4     0.013       7.4       1      33 [.     230     265 ..     230     280 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0086
  Nbl1_Borealin_N   4 alLenfdlEveeRirrlraelelllktlr 32 
                       l+ + d  v++Ri+r+ +++ ++ k+++
       CCG92409.1 194 SLITDVDRKVNNRIERMASQVSKQEKDIE 222
                      589999**************999877775 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
  Nbl1_Borealin_N   1 kkealLenfdlE...veeRirrlraelelllktlrn 33 
                      ++  +L + ++E    +++i+ l+++l+++ ++l++
       CCG92409.1 230 QIHSYLTDTEKElskTKDQIETLESKLTNQSQSLQQ 265
                      5678999999999999****************9975 PP

>> Rx_N  Rx N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       7.9   4.6e+03      22      41 ..     141     160 ..     135     161 .. 0.76
   2 ?   12.9   3.4   0.00017       0.1       8      54 ..     202     249 ..     195     272 .. 0.73
   3 ?    0.3   0.4       1.4   8.3e+02       7      30 ..     250     273 ..     248     301 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 7.9
        Rx_N  22 gvkeeleklkdeLesiqavL 41 
                 ++k+ +ek  +e +siq +L
  CCG92409.1 141 HLKKTIEKQSKEQRSIQNIL 160
                 67788888888888888766 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00017
        Rx_N   8 kLadllaeeakllkgvkeeleklkdeLesiqavLedaee......rqikdeav 54 
                 k+ + ++  a+++ + ++++e+l++ L++i+++L d e+            ++
  CCG92409.1 202 KVNNRIERMASQVSKQEKDIEELETSLNQIHSYLTDTEKelsktkD-----QI 249
                 7778888888999*************************95433321.....33 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1.4
        Rx_N   7 qkLadllaeeakllkgvkeelekl 30 
                 ++L+++l+++ ++l+++ ++l++ 
  CCG92409.1 250 ETLESKLTNQSQSLQQIASDLKQE 273
                 677888888888887777777654 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.0    0.0025       1.4      17      66 ..     219     268 ..     212     271 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0025
     FOXP-CC  17 edveeflkhlnseHalddkstaqlrvqmqvvqqlekqlvkEkerLqaMma 66 
                 +d+ee+   ln+ H+    +  +l   ++ ++ le++l++ ++ Lq   +
  CCG92409.1 219 KDIEELETSLNQIHSYLTDTEKELSKTKDQIETLESKLTNQSQSLQQIAS 268
                 788999999************************************98765 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.4     0.024        14       8      79 ..     206     275 ..     203     276 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.024
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100   8 elrqaaarfqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaan 79 
                 +++ +a++++kq++++e++ ++l++  ++l+++ +    ++ ++++e +  ++++  + L++i++ lkq ++
  CCG92409.1 206 RIERMASQVSKQEKDIEELETSLNQIHSYLTDTEKEL--SKTKDQIETLESKLTNQSQSLQQIASDLKQEKQ 275
                 68899*************************9985544..555799999999999999999999999999766 PP

>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.026        15      94     124 ..     147     177 ..     140     180 .. 0.75
   2 ?    4.7   0.9     0.049        28      28      99 ..     200     281 ..     190     290 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.026
                 HHHHHHHHHHTTXXXXXXXXXXXXXXXXXXX CS
       T2SSF  94 lrrkllaallepllllvvallvllillaill 124
                  ++ +  ++++ +l+++++++++++ ++i+l
  CCG92409.1 147 EKQSKEQRSIQNILTVFLVGFIFFFSIVIIL 177
                 5666777888888889998888888888887 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.049
                 SHHHHHHHHHHHHHHHTTSSHHHHHC...........T-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHH CS
       T2SSF  28 ngplaeelkriarrlraGgslseale...........rtpssefpelvvqlirageeggnLaevLerlaeyleeerelrrkll 99 
                 ++++  +++r+a +++  +   e le             +++e++++ +q+ ++ ++  n ++ L+++a++l +e ++r+ + 
  CCG92409.1 200 DRKVNNRIERMASQVSKQEKDIEELEtslnqihsyltD-TEKELSKTKDQIETLESKLTNQSQSLQQIASDLKQEKQNRIIRE 281
                 55666677777777777774444444444466666532.335889999999999999999999**********9999997555 PP

>> YjcZ  YjcZ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.0    0.0036       2.1      44     133 ..     206     299 ..     187     305 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0036
        YjcZ  44 inaevnaalelrLkllekLsreldpghLALttiaqrlallsqt....laekasaapklaqalaalaeefaarverkekaltqrellvqarrhse 133
                     ++ +++ + k +e+L   l++ h  Lt + ++l++ +++    ++++++ ++ l+q    l +e ++r+ r+e+ l+++ ll + +++ +
  CCG92409.1 206 RIERMASQVSKQEKDIEELETSLNQIHSYLTDTEKELSKTKDQietlESKLTNQSQSLQQIASDLKQEKQNRIIREEALLKRVSLLEETQKQNK 299
                 44455556666777888899999999988888888888765541111444445555455555557788899999*************9999865 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.5    0.0014      0.81      92     142 ..     137     187 ..     132     203 .. 0.67
   2 ?    0.6   0.1       0.6   3.5e+02      91     123 ..     204     236 ..     199     239 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0014
                   STTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTS CS
  E1-E2_ATPase  92 telgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgk 142
                   + ++++ + +e++++++ ++q++l+ +   ++++  ++++l++   ++++k
    CCG92409.1 137 SPVNHLKKTIEKQSKEQRSIQNILTVFLVGFIFFFSIVIILAVYGGMVIFK 187
                   566777788888888888888888888777666666655555555555444 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.6
                   TSTTTTTSTTS--------HHHHHHHHHHHHHH CS
  E1-E2_ATPase  91 dtelgkiarlveeakskktplqkkldklgkvlv 123
                   +++++++a++v++++++  +l+  l+++ ++l+
    CCG92409.1 204 NNRIERMASQVSKQEKDIEELETSLNQIHSYLT 236
                   67899*********************9998876 PP

>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.5    0.0015      0.85      12      61 ..     220     265 ..     193     280 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0015
        ApoO  12 ptdrLeegvrslRkslepytsavqdelnkvkskvetaeqsvtdtiasLke 61 
                 + ++Le++ +    ++++y++ +++el+k+k+++et+e+++t++ +sL++
  CCG92409.1 220 DIEELETSLN----QIHSYLTDTEKELSKTKDQIETLESKLTNQSQSLQQ 265
                 4444444444....467777777777777777777777777777777765 PP

>> MitMem_reg  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   7.7    0.0081       4.7      13      75 ..     205     263 ..     190     313 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0081
  MitMem_reg  13 psiqdasstlstglnrqyyslkilqerldlikdYlkkveegelpvnheilrnlqkllnllPhl 75 
                 ++i    + +++++++q++ ++ l++ l++i++Yl + e++  + +++i +  +kl n+   l
  CCG92409.1 205 NRI----ERMASQVSKQEKDIEELETSLNQIHSYLTDTEKELSKTKDQIETLESKLTNQSQSL 263
                 334....5999****************************663322222222222222222222 PP

>> DUF4806  Domain of unknown function (DUF4806)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       3.8   2.2e+03       8      34 ..     133     158 ..     126     164 .. 0.51
   2 ?    3.8   0.4      0.13        73      11      38 ..     217     244 ..     214     247 .. 0.77
   3 ?    8.7   1.6    0.0035         2      11      43 ..     245     277 ..     243     308 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.8
     DUF4806   8 PvsseeelerLEaavrtdekirqqyvn 34 
                 Pvss   ++ L +++++++k ++++ n
  CCG92409.1 133 PVSS-SPVNHLKKTIEKQSKEQRSIQN 158
                 4443.3455555555554444444433 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.13
     DUF4806  11 seeelerLEaavrtdekirqqyvnyLrk 38 
                 +e+++e+LE+++++  ++  +  ++L+k
  CCG92409.1 217 QEKDIEELETSLNQIHSYLTDTEKELSK 244
                 689**********877766666666665 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0035
     DUF4806  11 seeelerLEaavrtdekirqqyvnyLrkikgkk 43 
                 + +++e+LE +++++++  qq+ + L++ k+++
  CCG92409.1 245 TKDQIETLESKLTNQSQSLQQIASDLKQEKQNR 277
                 689************************999853 PP

>> MetOD2  Metanogen output domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.4       1.8   1.1e+03      41      83 ..      35      75 ..      21      80 .. 0.76
   2 ?    3.4   0.0      0.14        82      61      85 ..     137     161 ..     118     162 .. 0.82
   3 ?    7.3   1.1    0.0089       5.2      48      85 ..     192     229 ..     183     232 .. 0.82
   4 ?    6.2   1.6      0.02        11      57      86 ..     243     272 ..     231     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.8
      MetOD2 41 lLsqtydidddkaevseeieaalknlekkleaqeerlkqikke 83
                lL++t+++    +++ e   + lk+    le+q+++ ++i+ e
  CCG92409.1 35 LLESTSPLT--DLNFLESKLENLKEPASPLESQASQTSNIETE 75
                677777777..35777777788888888999999999999875 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.14
      MetOD2  61 aalknlekkleaqeerlkqikkele 85 
                   +  l+k +e+q ++ + i+++l+
  CCG92409.1 137 SPVNHLKKTIEKQSKEQRSIQNILT 161
                 557889***************9986 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0089
      MetOD2  48 idddkaevseeieaalknlekkleaqeerlkqikkele 85 
                  d     v ++ ++ ++ +  ++++qe+++++++ +l+
  CCG92409.1 192 QDSLITDVDRKVNNRIERMASQVSKQEKDIEELETSLN 229
                 5555567899999*********************9997 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.02
      MetOD2  57 eeieaalknlekkleaqeerlkqikkeles 86 
                 ++ ++ ++ le kl +q + l+qi   l++
  CCG92409.1 243 SKTKDQIETLESKLTNQSQSLQQIASDLKQ 272
                 566789******************999875 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.1    0.0095       5.5      12      86 ..     176     265 ..     166     276 .. 0.44

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0095
      DUF948  12 vLviflivvllkl...............kktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvse 86 
                 +L+++  +v++k                ++ ++++a+++ + ek+++++ + ++++ +   ++ +++++  +++++l +++ + ++s+++
  CCG92409.1 176 ILAVYGGMVIFKKihaqdslitdvdrkvNNRIERMASQVSKQEKDIEELETSLNQIHSYLTDTEKELSKTKDQIETLESKLTNQSQSLQQ 265
                 455555555554446666666444433322222222233333333333333333333333333333333334444444444444444433 PP

>> SieB  Super-infection exclusion protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.1     0.001       0.6      25      77 ..     152     205 ..     142     221 .. 0.71
   2 ?   -0.5   0.8       1.3   7.7e+02      51      77 ..     232     258 ..     224     298 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.001
        SieB  25 gkfleeyglwigl.vflisiayllaqvvskllaeikekikkkreqkkvekklkn 77 
                 ++   +++l+++l +f+++++++++ +v+ ++ ++k+  +++  ++ v +k++n
  CCG92409.1 152 EQRSIQNILTVFLvGFIFFFSIVIILAVYGGMVIFKKIHAQDSLITDVDRKVNN 205
                 556667777766527*****************8888877766666555555553 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.3
        SieB  51 vskllaeikekikkkreqkkvekklkn 77 
                  s+l ++ ke  k+k ++++ e+kl n
  CCG92409.1 232 HSYLTDTEKELSKTKDQIETLESKLTN 258
                 555556666666666666666666654 PP

>> CSG2  Ceramide synthase regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.5       1.4   8.2e+02      79     117 ..      68      76 ..      11     130 .. 0.53
   2 ?   10.2   2.8   0.00044      0.26      35     121 ..     143     229 ..     127     296 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.4
        CSG2  79 kssvsekesskenklesnsessleleekvesdeeleekt 117
                 +                              ++++e+++
  CCG92409.1  68 Q------------------------------TSNIETEK 76 
                 1..............................11111111 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00044
        CSG2  35 akekaadaeseeeeskaltvylt.fiyfaswllllPiarllkeatkssvsekess.........kenklesnsessleleekvesdeeleekteeek 121
                 +k+ +++++++ + +++ltv+l+ fi+f s +++l +   +  ++k +++++ ++              e+     +  ++++++++++ee +++ +
  CCG92409.1 143 KKTIEKQSKEQRSIQNILTVFLVgFIFFFSIVIILAVYGGMVIFKKIHAQDSLITdvdrkvnnrI----ERM----A--SQVSKQEKDIEELETSLN 229
                 24555577788888999***99669*******999986544444443333332222223222220....222....2..222222222222222111 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.52     3e+02       5      28 ..      44      67 ..      42      84 .. 0.74
   2 ?    4.9   3.0     0.051        29       9      40 ..     203     234 ..     195     242 .. 0.52
   3 ?    7.4   3.5    0.0085       4.9       5      43 ..     234     272 ..     230     278 .. 0.88
   4 ?    4.5   2.6     0.069        40       3      32 ..     246     277 ..     244     298 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.52
        XhlA  5 rlerietkldnleervdkleekaa 28
                +l+ +e+kl+nl+e  + le  a+
  CCG92409.1 44 DLNFLESKLENLKEPASPLESQAS 67
                577788888888886666666555 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.051
        XhlA   9 ietkldnleervdkleekaaeaeekiknleed 40 
                 ++++++ + ++v+k e++ +e e+++ +++  
  CCG92409.1 203 VNNRIERMASQVSKQEKDIEELETSLNQIHSY 234
                 34444444445555555555555554444444 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0085
        XhlA   5 rlerietkldnleervdkleekaaeaeekiknleedlkk 43 
                  l+ +e++l + ++++++le k +++ ++++++  dlk+
  CCG92409.1 234 YLTDTEKELSKTKDQIETLESKLTNQSQSLQQIASDLKQ 272
                 68999999*************************999997 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.069
        XhlA   3 kerlerietkldnleervdkl..eekaaeaee 32 
                 k+ +e++e+kl n ++ ++++  ++k++++  
  CCG92409.1 246 KDQIETLESKLTNQSQSLQQIasDLKQEKQNR 277
                 67788888888888885555411444555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3943  (0.219923); expected 358.6 (0.02)
Passed bias filter:                      983  (0.0548274); expected 358.6 (0.02)
Passed Vit filter:                       240  (0.0133861); expected 17.9 (0.001)
Passed Fwd filter:                        94  (0.0052429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 1.36u 0.41s 00:00:01.77 Elapsed: 00:00:00.63
# Mc/sec: 1522.00
//
Query:       CCG92410.1  [L=193]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1310.42
//
Query:       CCG92411.1  [L=47]
Description: hypothetical protein MFUM_690058 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 382.53
//
Query:       CCG92412.1  [L=192]
Description: Orotate phosphoribosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-10   40.3   1.5    1.4e-09   37.6   1.5    1.9  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.023   14.2   0.2      0.049   13.1   0.1    1.5  2  PRTase_2      Phosphoribosyl transferase
      0.073   13.4   0.0       0.37   11.1   0.0    1.9  2  DDE_Tnp_1_5   Transposase DDE domain


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   1.5   2.4e-13   1.4e-09       5     128 ..      46     155 ..      43     180 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 2.4e-13
                   TTT---EEEEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSH CS
  Pribosyltran   5 llenpaildavarlaaeileeyngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGg 101
                   ll+np + ++ a+ +a++++   ++p ++v  a gG+ +++++a+eL+++  y +k++                    +++  ++V++V+D+++tGg
    CCG92412.1  46 LLQNPSLCARYASCLAKRIQA--FRPQTIVSAAIGGILIGHEIAKELGIRHIYAEKSSNGMTLR------------RFKLKPLERVVVVEDVITTGG 128
                   689999888999999999999..*************************7777766655433333............45578889************* PP

                   HHHHHHHHHHCC-BSEEEEEEEEE-HH CS
  Pribosyltran 102 TllaalelLkekgpeevriavlvdkpa 128
                   T++ +l l++e+   +  +  lvd+++
    CCG92412.1 129 TVKDILSLVREQQGVVCAVSSLVDRST 155
                   ***********9995555555555554 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.34     2e+03      30      75 ..      51      90 ..      45     102 .. 0.61
   2 ?   13.1   0.1   8.2e-06     0.049     117     164 ..     110     156 ..      93     173 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.34
    PRTase_2 30 stvreagaaLaellaeakkeelpepvlvigfAEtAtaLghgvadal 75
                s   + ++ La++++      + +p ++++ A   + +gh +a++l
  CCG92412.1 51 SLCARYASCLAKRIQ------AFRPQTIVSAAIGGILIGHEIAKEL 90
                555555555666655......3345555666666666677666665 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 8.2e-06
    PRTase_2 117 llaaakelvLvDDEistGktalnliralqeklprkryvvvslvdwrse 164
                  l+  +++v+v D i+tG t+ ++++ ++e+ +    +v slvd ++e
  CCG92412.1 110 KLKPLERVVVVEDVITTGGTVKDILSLVREQ-QGVVCAVSSLVDRSTE 156
                 5566689****************99888775.4456778888887776 PP

>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.2   1.2e+03      58      86 ..      40      68 ..      33      83 .. 0.72
   2 ?   11.1   0.0   6.1e-05      0.37      35      75 ..     121     160 ..      95     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.2
  DDE_Tnp_1_5 58 fvqsllklaglellvpdystlsrraktle 86
                 f+q  l l + +l ++  s+l +r +   
   CCG92412.1 40 FLQCALLLQNPSLCARYASCLAKRIQAFR 68
                 55566666666666667799999998765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.1e-05
  DDE_Tnp_1_5  35 daaiqtcltvkvlfklplRqlqGfvqsllklaglellvpdy 75 
                  + +i+t  tvk +++l +R  qG+v ++++l++ ++   d+
   CCG92412.1 121 EDVITTGGTVKDILSL-VREQQGVVCAVSSLVDRSTESIDF 160
                  6689***********9.79************9876665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1651.04
//
Query:       CCG92413.1  [L=285]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-19   69.0   0.1      6e-19   68.5   0.1    1.3  1  LolA_like  Outer membrane lipoprotein-sorting protein


Domain annotation for each model (and alignments):
>> LolA_like  Outer membrane lipoprotein-sorting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.1   3.4e-23     6e-19      40     163 ..     122     249 ..     105     279 .. 0.91

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 3.4e-23
                 EEEE-GGGTTSECCTTC.EHHHHC--SCCCEEEEEEEEEEETTEEEEEEEEEESS.TTSSECEEEEEEETTT--EEEEEEEETTS-EEEEEEEEEEEEE CS
   LolA_like  40 vrrisssdksqsfmGsdfsyeDlssrevedythellgeeevggkdcyvleltpkdaadvsYskivlwvdketylplkvefydksgkllKtltvsdieki 138
                 ++ i++ ++++ ++++d+syeDl  ++++  +++ lg++++++ +c+ +++ p +   ++Ysk+++w+ +e y ++++e +++ ++l+K+l ++++++i
  CCG92413.1 122 WQPITGMNRTKHILNTDISYEDLCLDFIRWEKIKQLGTDSIKTLSCWAFDAYPGN-TPSAYSKVRYWIAEEYYALIRAEAFNSANQLVKRLDINSVQRI 219
                 678999*************************************************.7****************************************** PP

                 TTEEEEEEEEEEETTT-.....-EEEEEEE CS
   LolA_like 139 dgrwtptkmtmedlkkg.....hkTvleis 163
                 ++ ++ ++m++  + +g     +kT ++i+
  CCG92413.1 220 GDAYVIKEMQIATIPPGktlssSKTYIQIE 249
                 *********998877775555566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2288.72
//
Query:       CCG92414.1  [L=457]
Description: Phosphoglucosamine mutase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-40  137.4   0.0    6.4e-40  136.0   0.0    1.7  2  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    5.3e-29  100.7   0.1    9.8e-29   99.9   0.1    1.5  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    9.7e-15   55.1   0.0    2.3e-14   53.8   0.0    1.7  1  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
    3.2e-12   46.5   0.0    2.2e-11   43.8   0.0    2.2  2  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.0   0.0   1.4e-43   6.4e-40       3     133 ..       8     141 ..       6     145 .. 0.98
   2 ?   -3.0   0.0       1.2   5.4e+03       8      26 ..     220     238 ..     216     244 .. 0.50

  Alignments for each domain:
  == domain 1  score: 136.0 bits;  conditional E-value: 1.4e-43
                 GBBTTCEEEECCHCTBSCCHHHHHHHHHHHHCHHC...STS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEEEB-HHHHHHHHHHCCECEEEEE- CS
   PGM_PMM_I   3 kfgtsGlRgkvgegeltpelveklgqaiaeylkae...akkkkvvvGrDtRvssrelaealaaglaanGvevillgllptPavsfairklkadagimit 98 
                 +fgt+G+Rgk++  ++tp+ ++++g a+a++l+++   ++++++vvGrDtR ssr+l+ a+++g++++Gv+v+ lg+lp Pa+   ++ ++a +g+m++
  CCG92414.1   8 LFGTDGIRGKANLYPMTPQIALAAGVAAAKVLTNHcqsKNRHRIVVGRDTRLSSRMLEYAFISGVVSQGVDVYELGVLPSPALGSFTKVYEAIGGVMVS 106
                 8***********************************99999********************************************************** PP

                 -TTS-TTCCCEEEEETTTCE--CHHHHHHHHHHCC CS
   PGM_PMM_I  99 aSHnppeyngiKvylsnGgpispeveekIeaiiek 133
                 aSHnp  +ng+K+++ +G ++++e e++Ie++i++
  CCG92414.1 107 ASHNPFYDNGLKFFSFDGSKLDSELEKEIEKEIKQ 141
                 ********************************986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.2
                 CEEEECCHCTBSCCHHHHH CS
   PGM_PMM_I   8 GlRgkvgegeltpelvekl 26 
                 G+  +++ g ++p++++++
  CCG92414.1 220 GININFNCGSMNPQNIQQA 238
                 3444444455555555544 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.1   2.2e-32   9.8e-29       1     113 [.     268     379 ..     268     380 .. 0.94

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 2.2e-32
                  HHHHHHHHHHHHHHCH.CSTTTCEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETTCEEEETTTBSS--HHHHHHHHHHHHH CS
  PGM_PMM_III   1 dgdqllallakyllee.klkpgagvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeSghiifldeattkDGilaallvleila 97 
                  dgd +la+la ++l++  l++++ vv+tvm++l+l++ +++ gi++++t+vGd++v+e +k+eg++lGgE+Sghii   +++t DG+l+al +lei++
   CCG92414.1 268 DGDDILAILALDFLKKkALSKNT-VVATVMSNLGLDETLHEEGIRVIRTAVGDRNVAEVLKKEGLSLGGEQSGHIIPFAYSKTADGLLTALIILEIMS 364
                  79***********9987777776.************************************************************************** PP

                  HHTS-HHHHHHHHHHH CS
  PGM_PMM_III  98 etgkslselleellkk 113
                   tg+sl +l +  lk+
   CCG92414.1 365 STGNSLGSLKK-KLKR 379
                  *******9984.4555 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   5.2e-18   2.3e-14       3     103 .]     168     264 ..     166     264 .. 0.87

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 5.2e-18
                 HHHHGGGTS-HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-EEEES-----TT-TT...SS----TT-TTTTHHHHGGGGG-SEEEEE-TTS-BEEE CS
  PGM_PMM_II   3 YiealkekvdseaikksglkvvidplhGaggeilkellkelgvdvvelnaepdpdfpt...kapnpeekealkllielvkkegadlglafDgDaDRlgv 98 
                 Y + lk+ ++ + ++ +g++++id+++Ga+ e  ++ll+++g+ v +  +ep++   +   ++ np++      ++++v  +gadlg+a+DgD+DRl++
  CCG92414.1 168 YQNLLKSFFP-SEMSLKGMRIAIDTANGASFEAGPSLLESFGASVFPFGKEPNGININfncGSMNPQN------IQQAVLMTGADLGIALDGDGDRLVL 259
                 6666777776.66677789***********************************99888666666666......6666********************* PP

                 EETTE CS
  PGM_PMM_II  99 vderG 103
                 +de+G
  CCG92414.1 260 CDEKG 264
                 ***98 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.31   1.4e+03      23      42 ..     293     314 ..     274     316 .. 0.71
   2 !   43.8   0.0   4.9e-15   2.2e-11       3      68 ..     386     447 ..     384     453 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.31
                 H...HCCCCCCCCGCCEEEE.EE CS
  PGM_PMM_IV  23 a...sikeglkilledGrrlavR 42 
                 a   s+ ++ + l+e+G+r+ +R
  CCG92414.1 293 AtvmSNLGLDETLHEEGIRV-IR 314
                 1334777888999*******.99 PP

  == domain 2  score: 43.8 bits;  conditional E-value: 4.9e-15
                 CCCHCC-TT..EECCCCCTTHHCCCCCCCCGCCEEEE.EEEETTCCEEEEEEEESSHHHHHHHHHH CS
  PGM_PMM_IV   3 nvrveekakvvaalaallkvasikeglkilledGrrlavRpSGTepllrvyvEaksdeelarlaee 68 
                 n +v +k+  ++++++l+k     e+ + ++++Gr+l +R SGTep++r+ vEak++++++++ ++
  CCG92414.1 386 NLEVSQKKP-LDEIPGLKKL--MDEAQATFNGKGRIL-LRYSGTEPKIRLLVEAKDEDQVNKVGQK 447
                 788888766.**********..99*************.**********************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3238.12
//
Query:       CCG92415.1  [L=78]
Description: hypothetical protein MFUM_690062 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 595.63
//
Query:       CCG92416.1  [L=73]
Description: hypothetical protein MFUM_690063 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 565.05
//
Query:       CCG92417.1  [L=247]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-36  124.7   0.2      2e-36  124.1   0.2    1.2  1  DisA_N        DisA bacterial checkpoint controller nucleotide
  ------ inclusion threshold ------
      0.015   15.1   3.9      0.036   13.8   3.9    1.6  1  Oleosin       Oleosin
       0.58    9.7   3.9       0.98    8.9   0.1    2.2  2  E1-E2_ATPase  E1-E2 ATPase


Domain annotation for each model (and alignments):
>> DisA_N  DisA bacterial checkpoint controller nucleotide-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   0.2   3.4e-40     2e-36       2     119 .]     111     229 ..     110     229 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.1 bits;  conditional E-value: 3.4e-40
                 HHHHHHHHHT--EEEEEESSSCCCTTCCTSEEEEEE--HHHHHHHTSTTSTTCSSEEEEETTEEEEEEEEE--TT-TTS.ST-SHHHHHHHHHHHHSSS CS
      DisA_N   2 eaveelskkkiGaliviereeelkeiietgvkldaevskellkeifekksplhDGAviirdgrivaagviLplsenkel.kelGtRHraAlgiseetda 99 
                 +a+e l++++iGali ie+++      +tg+ l+a+vs++ll +if++++plhDG+viir+++iv a++i+pls+ +++ + lG RHraAlg+se+tda
  CCG92417.1 111 NAAEILQREHIGALIAIEQDDVYLPARDTGTILNAQVSADLLVTIFYPRTPLHDGGVIIRGDQIVVAAAIFPLSQVEQMeRLLGLRHRAALGLSEQTDA 209
                 68999****************99999*************************************************889977****************** PP

                 EEEEE-TTTS-EEEEETTEE CS
      DisA_N 100 lvivVSeetgkislakdgkl 119
                 +v+v+Se t+ is+a++gk+
  CCG92417.1 210 VVVVISEVTSVISIAYKGKM 229
                 ******************85 PP

>> Oleosin  Oleosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.9     6e-06     0.036      11      51 ..      36      76 ..      27      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6e-06
     Oleosin 11 vlggilLlLsGltLagtvigLavatPllvlfSPvlvPaaiv 51
                vl+g +++L GltL  +v  L v+t ll lfSP +  a +v
  CCG92417.1 36 VLTGLIVVLVGLTLFSSVFHLRVLTELLRLFSPSFFVALVV 76
                6788999**************************77665555 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.1     0.038   2.3e+02     122     160 ..      37      80 ..      14      84 .. 0.58
   2 ?    8.9   0.1   0.00016      0.98      69     132 ..     161     224 ..     147     231 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.038
                   HHHHHHHHHHHHHHS-STTTSSTT.....HHHHHHHHHHHHHS- CS
  E1-E2_ATPase 122 lvpvvlliallvflialllgksla.....eallralallvaaiP 160
                   l+ ++++++ l+++  +++ + l+     ++  +++al+v + P
    CCG92417.1  37 LTGLIVVLVGLTLFSSVFHLRVLTellrlFSPSFFVALVVLFQP 80 
                   33333333333333333333333345566777777777777666 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00016
                   EE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  69 mvfsGtvvvsgeakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliall 132
                    ++ G v+++g  ++v+ a+   ++++++ rl+   +++   l ++ d ++ v++ v  +i+++
    CCG92417.1 161 PLHDGGVIIRGDQIVVAAAIFPLSQVEQMERLLGLRHRAALGLSEQTDAVVVVISEVTSVISIA 224
                   5789********************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1677.16
//
Query:       CCG92418.1  [L=287]
Description: 7,8-dihydropteroate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-74  250.7   0.0    1.8e-74  250.5   0.0    1.0  1  Pterin_bind  Pterin binding enzyme


Domain annotation for each model (and alignments):
>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.5   0.0     1e-78   1.8e-74       1     244 []      25     265 ..      25     265 .. 0.98

  Alignments for each domain:
  == domain 1  score: 250.5 bits;  conditional E-value: 1e-78
                  EEEEETTTTTCHCCHHCTHHHHHHHHHHHHHHTT-SEEEEESS-TSTT--CCHHHHHHHHHHHHHHHHHHHCTSEEEEE-S-HHHHHHHHHTTSEEEE CS
  Pterin_bind   1 mgilNvtpdsfsdggkfedldkalaqarkmveeGAdilDiggestrPgaervdeeeelervvpvlealrdeadvpisiDttkaevaeaAlkagadivN 98 
                  mgi+N+tpdsfsdgg++++++ a ++a  m ++G d++D+g+estrPgae+v+e+ee++r++pvl++ r+++++p+siDt+k++v ++A+++gadi+N
   CCG92418.1  25 MGIINITPDSFSDGGQYLNPQVAADRAFWMQDSGVDLIDLGAESTRPGAEPVSEKEEMTRLLPVLKRCRAKLTIPLSIDTYKSKVCQMAIDHGADIIN 122
                  9************************************************************************************************* PP

                  ETTTTSSSTTHHHHHHHHT-EEEEESECSSTTTHCCCCCCCSSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHHTT CS
  Pterin_bind  99 dvsgeerdpkmlelvaeagaavvvmhmrgtpktmqeeegqyedvveeveaflearveaaeeaGvaperillDpgigfgkteehnlellrrldelreal 196
                  dvsg+  dp++l +va++ + +v+ h+rg pktmq+e+ qy+d+ve+v  +l+ +++++ +aG+++eri+ D+g+gf+k++ +nl llrrl+++ + l
   CCG92418.1 123 DVSGGGWDPELLAVVARSPVGYVLVHSRGMPKTMQKEA-QYHDIVEDVFNELSVKLDRCLQAGIDKERIICDVGFGFAKDKTQNLILLRRLSRF-HDL 218
                  **************************************.*******************************************************.*** PP

                  SSEBEEEGTTGHHHHHHHCTTCHGHHHHHHHHHHHHHHHTT-SEEEES CS
  Pterin_bind 197 evpvllGvSrksflgrllelgkaeeRdagtaaflalaaaaGadivrVh 244
                  + p+++GvSrksfl  + +  +  + +++++ + + a  +G++i rVh
   CCG92418.1 219 GRPLMIGVSRKSFLQVFAK-RHGVDVEMMNIIAQTVAFWQGVEIWRVH 265
                  **************98873.33589**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1982.07
//
Query:       CCG92419.1  [L=628]
Description: DNA polymerase IV fused to PHP phosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-21   74.2   1.0    1.9e-19   69.8   0.1    3.4  3  HHH_8            Helix-hairpin-helix domain
    1.4e-20   73.2   0.1    4.9e-20   71.5   0.0    2.0  2  DNA_pol_B_thumb  DNA polymerase beta thumb
    2.5e-13   50.4   1.9    9.5e-11   42.1   0.1    2.9  2  HHH_5            Helix-hairpin-helix domain
    1.3e-06   28.8   0.0    2.8e-06   27.7   0.0    1.6  1  PHP              PHP domain
     0.0011   18.8   0.5      0.037   13.9   0.1    2.8  2  HHH              Helix-hairpin-helix motif
     0.0016   18.6   0.0      0.004   17.3   0.0    1.6  1  DNA_pol_B_palm   DNA polymerase beta palm
     0.0097   15.7   0.0      0.031   14.1   0.0    1.9  1  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
  ------ inclusion threshold ------
      0.026   14.6   0.2        1.5    9.0   0.0    2.6  2  HHH_2            Helix-hairpin-helix motif
      0.069   13.4   0.0       0.66   10.2   0.0    2.4  2  Cdd1             Pathogenicity locus


Domain annotation for each model (and alignments):
>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.1   9.6e-23   1.9e-19       3      67 ..      35     101 ..      33     102 .. 0.94
   2 ?   -0.1   0.0      0.62   1.2e+03      47      61 ..     122     135 ..     110     141 .. 0.77
   3 ?   -0.7   0.1      0.96   1.9e+03      33      63 ..     144     172 ..     142     173 .. 0.78

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 9.6e-23
                 HHHHHHHHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHH.TT.HCTTSTT--HHHHHHHHHHH CS
       HHH_8   3 eiadaLeeladllelkgedpfrvraYrrAaraiealpeeitsl.ee.eltklpgiGkkiaakieeil 67 
                  +a +Le +a+llelkge+pf++raYr+Aara+++l+ee+ +l ++ +l +++giG++i +ki  ++
  CCG92419.1  35 TVATVLESIATLLELKGENPFKSRAYRTAARAVDSLTEELSDLiAQgRLDEIKGIGESIKEKIVTLV 101
                 6899***************************************9556****************9876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.62
                 THCTTSTT--HHHHH CS
       HHH_8  47 eeltklpgiGkkiaa 61 
                 e l  +pg+G+k a+
  CCG92419.1 122 E-LLNIPGLGPKRAK 135
                 4.899*****99876 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.96
                 CCCCC-SS-HHHHTTHCTTSTT--HHHHHHH CS
       HHH_8  33 raiealpeeitsleeeltklpgiGkkiaaki 63 
                 + ieal+++ ++ +  +  l g+G+k  + i
  CCG92419.1 144 TDIEALEKACKE-HR-IAGLAGFGPKSEENI 172
                 568888888888.65.999*****9987765 PP

>> DNA_pol_B_thumb  DNA polymerase beta thumb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   2.5e-23   4.9e-20       1      70 []     283     365 ..     283     365 .. 0.78
   2 ?   -2.2   0.0       2.4   4.9e+03      46      59 ..     430     443 ..     404     444 .. 0.72

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 2.5e-23
                      HHHHHHS-HHHHHHHHHHHHCTTEEEETTEEE................ETCCCE............EEC-SSHHHHHHHCTS----GGGTT CS
  DNA_pol_B_thumb   1 allyfTGsktFnrdlRrlakkkglkLnssglrd.....ek....gkaeddddge............lvevetErdvfelLglpyipPeeRe 70 
                      all+fTGsk++n++lR++a ++g kL+++gl++     e+    +                     ++ +++E+d++e Lgl yipPe+Re
       CCG92419.1 283 ALLHFTGSKEHNVALRQRAIAQGKKLSEWGLFRvhtqtERrledE--------SedmpkvsqplesKIICRAEKDIYESLGLCYIPPELRE 365
                      89******************************8654431133221........12234445555556689********************7 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.4
                      EEC-SSHHHHHHHC CS
  DNA_pol_B_thumb  46 lvevetErdvfelL 59 
                       +++ +E++v++ L
       CCG92419.1 430 QANGLSEERVMAQL 443
                      55678999999887 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.3    0.0056        11       3      52 ..      45      98 ..      43      99 .. 0.68
   2 !   42.1   0.1   4.8e-14   9.5e-11       3      53 ..     122     174 ..     120     177 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0056
                HHHTSTT--HHHHHHHHTTT--SHHHHHHS.....-HHHHHTSTTS-HHHHHHHH CS
       HHH_5  3 eLlsvsGiGpktAlallsaGiesvedlaaa.....dveeLakipGiGkktAerii 52
                 Ll+++G +p   +a   a  + v+ l ++     ++ +L +i+GiG+   e+i+
  CCG92419.1 45 TLLELKGENPFKSRAYRTA-ARAVDSLTEElsdliAQGRLDEIKGIGESIKEKIV 98
                5788888888888777777.555554444333335567*********98877775 PP

  == domain 2  score: 42.1 bits;  conditional E-value: 4.8e-14
                 HHHTSTT--HHHHHHHHTT.T--SHHHHHHS-HH.HHHTSTTS-HHHHHHHHH CS
       HHH_5   3 eLlsvsGiGpktAlallsa.Giesvedlaaadve.eLakipGiGkktAeriil 53 
                 eLl ++G+Gpk+A+ l++  Gi+ +e+l +a++e ++a + G+G+k  e+i+l
  CCG92419.1 122 ELLNIPGLGPKRAKFLYEElGITDIEALEKACKEhRIAGLAGFGPKSEENILL 174
                 8******************99**********98549***************98 PP

>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.4e-09   2.8e-06       2      74 ..     391     490 ..     390     585 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.4e-09
                 EEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTT............HHHHHHHHHHHHTTTTSEEEEEEE....................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF
         PHP   2 lHvHteyslldgalsieelvkkakelglkaiaiTDhgnlf............gyvefykaakkkykagikpiiGleayvaddse............... 73 
                 +H+Ht+ s   ++l  ee+vk+a e+g++ ++i Dh+               + +e +k+++  + +g+ +  G+e+++ ++++               
  CCG92419.1 391 FHCHTTESDGRSSL--EEMVKAAMEFGFEYLGIADHSKSSfqanglseervmAQLEKIKKLN-AQTKGFYVFSGIECDILKEGKldfhddllkeldyvv 486
                 799*9999444777..*********************99999*******6666666666664.4448************99998555555555555544 PP

                 .... CS
                 ...x RF
         PHP  74 ...k 74 
                    +
  CCG92419.1 487 aslH 490
                 4440 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.12   2.4e+02      13      27 ..      83      97 ..      83      99 .. 0.84
   2 !   13.9   0.1   1.8e-05     0.037       2      24 ..     112     134 ..     111     135 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.12
                HHTSTT-SHHHHHHH CS
         HHH 13 LlalPGVGpktAeaI 27
                L +++G+G++  e+I
  CCG92419.1 83 LDEIKGIGESIKEKI 97
                6689*****998888 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.8e-05
                 HHHHHTSSHHHHHTSTT-SHHHH CS
         HHH   2 leglipasreeLlalPGVGpktA 24 
                 l+ ++p ++ eLl +PG Gpk+A
  CCG92419.1 112 LKKEFPPTLLELLNIPGLGPKRA 134
                 67899*****************9 PP

>> DNA_pol_B_palm  DNA polymerase beta palm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     2e-06     0.004      13      52 ..     194     236 ..     187     265 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2e-06
                     HHHHHHHHH-TT...-EEEE-HHHHTT-SEESSEEEEEEBTTB CS
  DNA_pol_B_palm  13 lvkkaakeldpe...vevivcGSYRRgaessGDvDvlitkkda 52 
                     +v++ ++ l+++   ++++++GS+RRg+e   D+D+l t +d 
      CCG92419.1 194 TVEALLDYLKKNpaiIHLNIAGSFRRGKEIVKDLDFLCTSNDP 236
                     5555555665555558999*******************99875 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.5e-05     0.031       3      31 ..     123     154 ..     122     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
  DNA_pol_lambd_f   3 FtkvyGVGpktAkkwyak.Girtledlra..k 31 
                      ++++ G Gpk+Ak +y++ Gi+++e l +  k
       CCG92419.1 123 LLNIPGLGPKRAKFLYEElGITDIEALEKacK 154
                      899***********************998553 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.069   1.4e+02      36      53 ..      82      99 ..      71     105 .. 0.87
   2 ?    9.0   0.0   0.00076       1.5       5      47 ..     123     168 ..     119     174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.069
       HHH_2 36 eLlevddiGeeiAqsive 53
                 L e+++iGe i ++iv+
  CCG92419.1 82 RLDEIKGIGESIKEKIVT 99
                589*********999987 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00076
       HHH_2   5 aLGIrhVGektAklLakrFk..sldaLkkasle.eLlevddiGeei 47 
                  L I+  G k Ak L ++ +  +++aL+ka  e  ++ + + G++ 
  CCG92419.1 123 LLNIPGLGPKRAKFLYEELGitDIEALEKACKEhRIAGLAGFGPKS 168
                 589***************9988*******96552688888888876 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.35   6.9e+02       7      26 ..      82     101 ..      79     125 .. 0.68
   2 ?   10.2   0.0   0.00033      0.66       5      36 ..     120     152 ..     116     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.35
        Cdd1   7 elqdiPniGkalaedlvelG 26 
                 +l +i +iG+++ e++v l 
  CCG92419.1  82 RLDEIKGIGESIKEKIVTLV 101
                 68899*********999874 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00033
        Cdd1   5 lkelqdiPniGkalaedlv.elGirsveelkge 36 
                 l el +iP+ G++ a+ l+ elGi+++e l++ 
  CCG92419.1 120 LLELLNIPGLGPKRAKFLYeELGITDIEALEKA 152
                 67899*************989********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4346.21
//
Query:       CCG92420.1  [L=452]
Description: Glutamate-1-semialdehyde 2,1-aminomutase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-63  213.2   0.0    6.3e-63  212.8   0.0    1.0  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.8   0.0   3.5e-67   6.3e-63       8     358 ..      57     390 ..      52     420 .. 0.90

  Alignments for each domain:
  == domain 1  score: 212.8 bits;  conditional E-value: 3.5e-67
                  -SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHH CS
  Aminotran_3   8 nlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlK 105
                   +++ +++a+G+ l dvdg+ y D v+s+ ++++Gh+   vv a++e++++   +sfga    + ++la+ + +++p  ++k+ + nsG+eA +tA++
   CCG92420.1  57 RIPFYVSRAKGSKLFDVDGNCYTDYVCSWGALIHGHCYSPVVRAINEALQNG--TSFGANCPLE-IRLAQLIRSAMPS-IEKIRFLNSGTEACMTAIR 150
                  567899**********************************************..8888876665.6899999999999.******************* PP

                  HHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCET CS
  Aminotran_3 106 larkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqg 203
                  lar         +++ki++f+g++HG++   l  +gs     t+++++  +++    +++++l+ n+      +e+l +  kk   e+aA+i+Ep+++
   CCG92420.1 151 LARG------FSRREKIMKFEGCYHGHVDSLLVKAGS-GALTTGIPDS-EGIPASLSALTIILPWND------EEKLISAFKKYGRETAAIILEPVPA 234
                  ****......99*************************.7888888776.556666666789999999......3444455678999************ PP

                  TTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTT..TTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS...B--TTTT-HH CS
  Aminotran_3 204 egGvvvaspeflaklrelckkhdvllivDEvqtGf..GrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs...hgsTfgGnpl 296
                  + G ++++++fl+++ + ++ ++ l+i+DEv tGf  +  G   A + + ++pDl++l+K ++gGlp+ a  +++e+m+ l+p +   +++T +Gnpl
   CCG92420.1 235 NCGLIPPKEGFLEAIESQARAYGTLIIFDEVITGFrlSYGG---AQALFKIKPDLTVLGKIIGGGLPVGALGGKKEIMDSLSPLGkvyQAGTLSGNPL 329
                  ***********************************777777...88888**********************************99999********** PP

                  HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCET CS
  Aminotran_3 297 acavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaev 358
                  a+a  +a le +++ +  +  ++lg++l++g+ e+qkk  +  +  + G ++++ ++ +++v
   CCG92420.1 330 AMASGIAQLEELQKGHAYQYLENLGQQLETGMLEIQKKLSYPLQFHRFGSLFSF-FFTPKKV 390
                  **************************************9*************99.5555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2999.35
//
Query:       CCG92421.1  [L=600]
Description: SpoIVB-like peptidase, S55 family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-06   28.8   0.0    1.3e-05   25.3   0.0    2.1  2  Peptidase_S55  SpoIVB peptidase S55


Domain annotation for each model (and alignments):
>> Peptidase_S55  SpoIVB peptidase S55
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   7.3e-10   1.3e-05     114     202 ..      39     127 ..      21     137 .. 0.78
   2 ?    1.0   0.1      0.02   3.5e+02      13      54 ..     245     283 ..     241     328 .. 0.69

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 7.3e-10
  Peptidase_S55 114 lkeevkegkaki.ltvledeeveeyeieiekikkeskekeknlvi.kvtdeeLlektgGivqGmSGsPiiqngklvGavthvlvndptkGY 202
                     k+++k g   i +tvl++e++e  e ei  i k+      +l+i k++d++  ++  G v GmSGsP+  +gklvGa++  + +  + G+
     CCG92421.1  39 PKDKLKPGMRGItYTVLQGEKIEPLETEILGIAKNYIGPGLDLIIaKLVDPK--TAVIGAVHGMSGSPLYVDGKLVGALSRRIASFEKDGH 127
                    5677777766662678899*************99988777666553788988..46779*******************9987776666665 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.02
  Peptidase_S55  13 aaGiGtltfvdpetkkfgaLGHeisdvdtgelleikeGeive 54 
                    + G Gtlt+ +   ++  a+GH +     ++ l+++  e+++
     CCG92421.1 245 IGGTGTLTWRN--GTNVLAFGHPMFGFG-KSNLPMAMAEVIT 283
                    6799*****98..677899***998773.4455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4318.22
//
Query:       CCG92422.1  [L=343]
Description: Cytochrome c peroxidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-57  192.5   0.0    1.3e-53  181.7   0.0    2.1  2  CCP_MauG         Di-haem cytochrome c peroxidase
    8.4e-13   49.3   0.0    1.8e-07   32.2   0.0    2.5  2  Cytochrom_C      Cytochrome c
    6.8e-06   26.3   0.1      0.043   14.1   0.0    3.1  2  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
  ------ inclusion threshold ------
      0.012   15.6   0.1        4.2    7.4   0.0    2.3  2  Cytochrome_C7    Cytochrome c7 and related cytochrome c
      0.096   13.1   0.0        1.4    9.3   0.0    2.5  2  DUF1924          Domain of unknown function (DUF1924)
        0.1   12.9   0.0         17    5.8   0.0    2.5  2  PSCyt3           Protein of unknown function (DUF1588)
       0.13   12.1   1.4         12    5.7   0.3    2.3  2  Paired_CXXCH_1   Doubled CXXCH motif (Paired_CXXCH_1)


Domain annotation for each model (and alignments):
>> CCP_MauG  Di-haem cytochrome c peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.7   0.0   5.1e-57   1.3e-53       1     148 [.      52     200 ..      52     202 .. 0.98
   2 !    8.9   0.0   0.00088       2.3      22      79 ..     218     292 ..     211     321 .. 0.65

  Alignments for each domain:
  == domain 1  score: 181.7 bits;  conditional E-value: 5.1e-57
                 HHHHHHHHHHHC-GGGSTTSS--HHHHSGCCCTTS-SSSSBBEGGGEBSSS----STTGGGSSSBSTTEEBSSHHHHHHHHHHHTTTTH.SSHHHHHHH CS
    CCP_MauG   1 eekveLGkkLFfdkrLSgngkisCasCHdpaagftdglkvslgvegrlgarnaptllnaafnkglfwdgraesleeqalgPllnpvemgnaskeevver 99 
                 +ekv+LG+ LFf++rLS++ kisC+sCH++a+++ dgl++s+g++ + g+rnapt+lnaa+++++fwdgra+++eeqa+gP+lnp+em+ ++ke vv+r
  CCG92422.1  52 PEKVNLGRYLFFEPRLSKSAKISCNSCHSLANSGVDGLPTSIGHKWQIGPRNAPTVLNAALQFTQFWDGRAKDVEEQAMGPMLNPKEMA-STKELVVQR 149
                 589*************************************************************************************8.9******** PP

                 HHTSHHHHHHHHHHCT...SCCSHHHHHHHHHHHHTT--STTSHHHHHHTTS CS
    CCP_MauG 100 laaspeYaelfeaafg...ekitfaniakAiaayertlvsaeskfDrylkgd 148
                 l+++p+Y+e+f++af+   ++itf+n+akAiaa+ertl++  s+fDry+ gd
  CCG92422.1 150 LKSIPQYEEMFHKAFPedtDPITFENAAKAIAAFERTLLTL-SRFDRYMDGD 200
                 *****************99999**************99986.*******997 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00088
                 --HHHHSGCCCTTS-SSSSBBE...........GGGEBSS............S----STTGGGSSSBSTTEEBSSHHHHHH CS
    CCP_MauG  22 isCasCHdpaagftdglkvslg...........vegrlga............rnaptllnaafnkglfwdgraesleeqal 79 
                 + C +CH+ +  +     ++ g                 +             ++p+l n++    +f +gr+ slee ++
  CCG92422.1 218 TGCITCHNGTDIGGGM-FQKFGlvhkvewlqdlG-----RfevtknpadkyvFKVPSLRNVTKTAPYFNNGRVWSLEEAVK 292
                 67*****743332221.12222112222222220.....13333333444448**********99***********99774 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1     2e-05     0.051      11      67 ..      74     143 ..      58     187 .. 0.83
   2 !   32.2   0.0   7.2e-11   1.8e-07       3      91 ..     210     318 ..     208     319 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2e-05
                  TGGGTB-SSSBSSS.................--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGG CS
  Cytochrom_C  11 nCaaCHgvegggakqgg.............gptlsgaaerasaasigasvanpaavsaprddfekkklta 67 
                   C +CH+++  g+ + +             +pt  +aa + +++++g+ ++  +++  p  +++   +t+
   CCG92422.1  74 SCNSCHSLANSGVDGLPtsighkwqigprnAPTVLNAALQFTQFWDGRAKDVEEQAMGPMLNPKEMASTK 143
                  7************9877**********************************9998888877666666555 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 7.2e-11
                  -HHHHH.HTTGGGTB.-SSSBSSS.................................--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGG CS
  Cytochrom_C   3 rGkelf.tanCaaCH.gvegggakqgg.............................gptlsgaaerasaasigasvanpaavsaprddfekkkltaem 69 
                  +G + f +++C +CH g + gg   ++                             +p l++++++a+++++g++++  +av+ ++  + +k      
   CCG92422.1 210 EGLKTFiQTGCITCHnGTDIGGGMFQKfglvhkvewlqdlgrfevtknpadkyvfkVPSLRNVTKTAPYFNNGRVWSLEEAVKTMGYVQLGKN----- 302
                  6878899********777777777777*****************************************************9999999999999..... PP

                  GGG.TT--HHHHHHHHHHHHTT CS
  Cytochrom_C  70 parkerlteqeiadlaaYLksl 91 
                        l+++e+++++++L sl
   CCG92422.1 303 ------LSDEEVKKIVSFLGSL 318
                  ......*************886 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.2     0.001       2.6      11      33 ..      72      98 ..      66     133 .. 0.73
   2 !   14.1   0.0   1.7e-05     0.043       8      67 .]     213     315 ..     206     315 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.001
  Cytochrome_CBB3 11 kknCasCHg...kggag.pslagrdwe 33
                     k +C+sCH    +g  g p   g++w+
       CCG92422.1 72 KISCNSCHSlanSGVDGlPTSIGHKWQ 98
                     569*****9554444457666688887 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.7e-05
  Cytochrome_CBB3   8 alykk.nCasCHg.kggag...................................pslagr.dwep...dalvdiiknGkgaMp..afggqlsde 58 
                      +++ +  C +CH  ++ +g                                   psl++  +++p      v+++++ ++ M     g++lsde
       CCG92422.1 213 KTFIQtGCITCHNgTDIGGgmfqkfglvhkvewlqdlgrfevtknpadkyvfkvPSLRNVtKTAPyfnNGRVWSLEEAVKTMGyvQLGKNLSDE 306
                      4554448*****63332224788898999999998888888888888888888888887744444666777778888888777447778***** PP

  Cytochrome_CBB3  59 elwalvaYl 67 
                      e++++v +l
       CCG92422.1 307 EVKKIVSFL 315
                      ******997 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0053        14      12      23 ..      71      82 ..      62      98 .. 0.72
   2 ?    7.4   0.0    0.0016       4.2      44      57 ..     213     227 ..     192     244 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0053
  Cytochrome_C7 12 tgykCtdCHskl 23
                   ++ +C++CHs +
     CCG92422.1 71 AKISCNSCHSLA 82
                   345677777654 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0016
  Cytochrome_C7  44 eves.ltCgaCHdgk 57 
                    ++++ + C++CH+g+
     CCG92422.1 213 KTFIqTGCITCHNGT 227
                    333323499999987 PP

>> DUF1924  Domain of unknown function (DUF1924)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00054       1.4       8      35 ..      55      81 ..      49      88 .. 0.79
   2 ?    0.5   0.0      0.32   8.2e+02      26      35 ..     217     226 ..     207     236 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00054
                HHHHHHHHH---SSS-TT-SSTHHHH-S CS
     DUF1924  8 aerGealfkkkvktkkgkelsCasCHge 35
                ++ G+ lf +  + +k++++sC sCH+ 
  CCG92422.1 55 VNLGRYLFFEP-RLSKSAKISCNSCHSL 81
                56788888555.7888999*******85 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.32
                 -SSTHHHH-S CS
     DUF1924  26 elsCasCHge 35 
                 ++ C +CH  
  CCG92422.1 217 QTGCITCHNG 226
                 678*****64 PP

>> PSCyt3  Protein of unknown function (DUF1588)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.018        46      66      79 ..      70      83 ..      38      89 .. 0.78
   2 ?    5.8   0.0    0.0064        17      68      89 ..     217     238 ..     202     244 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.018
      PSCyt3 66 rsaeaCasCHelid 79
                +++ +C+sCH+l +
  CCG92422.1 70 SAKISCNSCHSLAN 83
                46678*****9877 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0064
      PSCyt3  68 aeaCasCHelidplGfalenfd 89 
                 ++ C +CH+  d  G ++++f 
  CCG92422.1 217 QTGCITCHNGTDIGGGMFQKFG 238
                 567**************99996 PP

>> Paired_CXXCH_1  Doubled CXXCH motif (Paired_CXXCH_1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.3    0.0048        12       8      20 ..      74      86 ..      68      95 .. 0.76
   2 ?    4.9   0.0    0.0084        21       7      14 ..     219     225 ..     206     229 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0048
  Paired_CXXCH_1  8 eClsCHnphgsdn 20
                    +C+sCH+   s  
      CCG92422.1 74 SCNSCHSLANSGV 86
                    6*****9877755 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0084
  Paired_CXXCH_1   7 geClsCHn 14 
                     g C +CHn
      CCG92422.1 219 G-CITCHN 225
                     3.666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2455.27
//
Query:       CCG92423.1  [L=719]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-05   24.0   0.0         12    6.6   0.0    5.8  6  PQQ_3        PQQ-like domain
     0.0002   21.2   0.3        3.9    8.0   0.0    5.5  6  Reg_prop     Two component regulator propeller
    0.00083   19.0   0.0       0.12   11.9   0.0    3.1  2  SGL          SMP-30/Gluconolactonase/LRE-like region
     0.0035   16.9   0.1       0.13   11.7   0.0    2.7  2  Tachylectin  Tachylectin
     0.0063   15.8   0.0       0.15   11.3   0.0    2.2  2  DUF5050      Domain of unknown function (DUF5050)
  ------ inclusion threshold ------
      0.012   15.9   0.2      0.034   14.5   0.1    1.8  2  DUF2098      Uncharacterized protein conserved in archaea (DU
      0.072   12.4   0.1       0.22   10.8   0.0    1.7  2  WD40_like    WD40-like domain
       0.16   11.6   0.0       0.39   10.4   0.0    1.6  1  Big_3_3      Bacterial Ig-like domain (group 3)


Domain annotation for each model (and alignments):
>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.047     1e+02      14      36 ..     115     139 ..     105     140 .. 0.76
   2 ?    2.5   0.0       0.1   2.3e+02      24      37 ..     167     181 ..     154     184 .. 0.82
   3 ?   -0.9   0.0       1.2   2.6e+03      20      34 ..     204     219 ..     186     221 .. 0.81
   4 ?    1.5   0.0       0.2   4.5e+02      12      27 ..     237     252 ..     231     256 .. 0.82
   5 !    6.6   0.0    0.0052        12       3      37 ..     313     357 ..     312     362 .. 0.77
   6 ?    0.0   0.0      0.59   1.3e+03      10      30 ..     369     389 ..     366     391 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.047
       PQQ_3  14 nsspavdg.glvyvgtg.dGtlyAl 36 
                  s++a+ + g ++vgt+ dG++y +
  CCG92423.1 115 ISALAMNNkGEIFVGTSpDGKIYKI 139
                 466677665779999999*****75 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.1
       PQQ_3  24 vyvgtg.dGtlyAlD 37 
                  yvgtg  G++y l 
  CCG92423.1 167 MYVGTGtGGRIYKLT 181
                 69****9*****885 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.2
       PQQ_3  20 dgglvyvgtg.dGtly 34 
                  +g++ +gt   G++y
  CCG92423.1 204 TEGTLLAGTAnRGSIY 219
                 5799999999888887 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.2
       PQQ_3  12 pvnsspavdgglvyvg 27 
                 ++ns +a+d ++vy++
  CCG92423.1 237 EINSLVAADHDTVYFS 252
                 68888899******97 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.0052
       PQQ_3   3 vlWsv...qlpgpvnssp.......avdgglvyvgtgdGtlyAlD 37 
                 ++W+    ++p+p++ss         + ++l+  +++ G +y++D
  CCG92423.1 313 EIWKIeknGVPYPIWSSKdfvfnilWFQNRLLIGSDSGGYVYSID 357
                 6788888899********998887544466666666699999988 PP

  == domain 6  score: 0.0 bits;  conditional E-value: 0.59
       PQQ_3  10 pgpvnsspavdgglvyvgtgd 30 
                 ++  n + a++g+ +++++++
  CCG92423.1 369 GSNQNNAFALSGRQLFIASSN 389
                 555566789*********987 PP

>> Reg_prop  Two component regulator propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.2   1.6e+04       1      16 [.      68      84 ..      68      89 .. 0.63
   2 ?    4.7   0.0     0.021        48       2      22 ..     110     130 ..     109     131 .. 0.91
   3 !    8.0   0.0    0.0018       3.9       5      23 ..     154     172 ..     150     173 .. 0.87
   4 ?   -3.0   0.0         7   1.6e+04       5      19 ..     175     189 ..     174     190 .. 0.78
   5 ?    0.8   0.0       0.4     9e+02       2      24 .]     192     214 ..     191     214 .. 0.87
   6 ?   -1.5   0.0       2.2   4.9e+03       4      18 ..     350     362 ..     347     362 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.2
                SBSSSCEEEEEE.-TTS CS
    Reg_prop  1 glpsnnvtaile.DsdG 16
                +lp+++ ++il    +G
  CCG92423.1 68 SLPAEQAWSILAeGMNG 84
                57888888555426666 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.021
                 BSSSCEEEEEE-TTSCEEEEE CS
    Reg_prop   2 lpsnnvtaileDsdGrlWvGt 22 
                 +p +n++a++  ++G + vGt
  CCG92423.1 110 FPEGNISALAMNNKGEIFVGT 130
                 5789****************9 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0018
                 SCEEEEEE-TTSCEEEEES CS
    Reg_prop   5 nnvtaileDsdGrlWvGte 23 
                  ++++i  D + +++vGt 
  CCG92423.1 154 KYIWSIICDDKSNMYVGTG 172
                 6899**************6 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 7
                 SCEEEEEE-TTSCEE CS
    Reg_prop   5 nnvtaileDsdGrlW 19 
                 ++++ +  D +G ++
  CCG92423.1 175 GRIYKLTPDGKGEVY 189
                 578889999999876 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.4
                 BSSSCEEEEEE-TTSCEEEEESS CS
    Reg_prop   2 lpsnnvtaileDsdGrlWvGteg 24 
                 l+ ++v+++l   +G+l  Gt +
  CCG92423.1 192 LNETHVRCLLFYTEGTLLAGTAN 214
                 678899*99999********975 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 2.2
                 SSCEEEEEE-TTSCE CS
    Reg_prop   4 snnvtaileDsdGrl 18 
                 +++v++i  Ds+G++
  CCG92423.1 350 GGYVYSI--DSNGKM 362
                 6788888..999975 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   5.4e-05      0.12     115     232 ..      93     202 ..      81     214 .. 0.72
   2 ?    2.8   0.0     0.032        73      21      60 ..     350     389 ..     335     452 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.4e-05
         SGL 115 galyrldpdgklervl.ddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkgegepDGlavDaeGnvwvAvwgggkvvrfdp 212
                 g+l+r++++++ ++++    +   +la+++ g+ +    s+ +ki++++ +   g   + +vf+d k++   + ++++D + n++v +  gg++ +++p
  CCG92423.1  93 GKLFRVQKNSSYQLIAkFPEGNISALAMNNKGEIFV-GTSPDGKIYKIKQN---G---QFEVFFDPKEKY--IWSIICDDKSNMYVGTGTGGRIYKLTP 182
                 777777777555555412233344677777776665.77888888887764...3...356897777775..999************************ PP

         SGL 213 dGklieeiklpakrvtscaF 232
                 dGk     +l +++v ++ F
  CCG92423.1 183 DGKGEVYATLNETHVRCLLF 202
                 *9976666777778888888 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.032
         SGL  21 gqrihrldpatgketvldtpe.svGaiaprkdgrlvvasks 60 
                 g+ ++ +d+++++++ l+t + ++ a+a+  + +l +as++
  CCG92423.1 350 GGYVYSIDSNGKMDKLLKTGSnQNNAFAL-SGRQLFIASSN 389
                 44445555555555555554433333333.44444444444 PP

>> Tachylectin  Tachylectin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0     6e-05      0.13      85     146 ..     128     193 ..      86     250 .. 0.80
   2 ?    1.9   0.0      0.06   1.3e+02     135     155 ..     347     367 ..     329     387 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6e-05
                  EEE-TTS-EEEEETT.EEEEE---SSTTS-H....HHH-EE.EESSSGGG-SEEEE-TT--EEEEE. CS
  Tachylectin  85 ivvdpkGvlYavtadGeLykgppPsdeetsW....eavatk.vidtgwkdfdslfadpdGvlYavts 146
                  +   p G++Y+++++G+++    P++++  W    + ++++ v++   +++ +l++d+ G +Ya  +
   CCG92423.1 128 VGTSPDGKIYKIKQNGQFEVFFDPKEKY-IWsiicDDKSNMyVGTGTGGRIYKLTPDGKGEVYATLN 193
                  4557899999999999999888887665.57789955555516666678999999999999999754 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.06
                  E-TT--EEEEE.TTEEEEES- CS
  Tachylectin 135 adpdGvlYavtstGrlvkrak 155
                  +d  G +Y++ s+G++ k  k
   CCG92423.1 347 SDSGGYVYSIDSNGKMDKLLK 367
                  344566666666666555443 PP

>> DUF5050  Domain of unknown function (DUF5050)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   6.5e-05      0.15     115     237 ..     130     259 ..      89     264 .. 0.75
   2 ?    2.0   0.0     0.046     1e+02     115     173 ..     347     406 ..     312     412 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.5e-05
                 SSS-EEEEEEETTS---EEE..ESS----SEEETTEEEEE-T.TT--EEEEETTT..TEEEEEE-S-EEEEEEEETTEEEEEGGGTT-EEEE-SSS--- CS
     DUF5050 115 ekdglklykikidgkektkl..sdeaieplsvkdgwiYytgesedhslykldtdg..ksiskvseenlyllvvegdyiYyidlsknyaLyrvklsgsek 209
                 ++ ++k+ykik +g+ +     ++++i +++++d+   y g+ +++++ykl  dg  +  +++ e ++ +l  + +      + +  ++y++   g++ 
  CCG92423.1 130 TSPDGKIYKIKQNGQFEVFFdpKEKYIWSIICDDKSNMYVGTGTGGRIYKLTPDGkgEVYATLNETHVRCLLFYTEGTLLAGTANRGSIYKIFPGGKSV 228
                 456778999999999998886677789999999999999999999999999988842345677777888888888888888889999999998888888 PP

                 EE-..S-S-E.EEEEEETTEEEEEE-SSS-E CS
     DUF5050 210 evl..tedkv.dnyNvtgnwiYyqkesdeek 237
                   +  +++++ +++  + +++Y++  +++++
  CCG92423.1 229 LFVdpEKEEInSLVAADHDTVYFSAVGKKKP 259
                 7774423333255778889999988777665 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.046
                 SSS-EEEEEEETTS---EEEES..S----SEEETTEEEEE-T.TT--EEEEETTTTEEEEE CS
     DUF5050 115 ekdglklykikidgkektklsd..eaieplsvkdgwiYytgesedhslykldtdgksiskv 173
                 ++ g+ +y+i+ +gk ++ l++  ++ + + +++ +++   +s+  ++y ++  +++++ v
  CCG92423.1 347 SDSGGYVYSIDSNGKMDKLLKTgsNQNNAFALSGRQLF-IASSNPVHIYVMEETQREREAV 406
                 44555556666666666655442123333333333333.3333555555555555555554 PP

>> DUF2098  Uncharacterized protein conserved in archaea (DUF2098)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       6.8   1.5e+04      11      27 ..     128     142 ..     126     147 .. 0.76
   2 ?   14.5   0.1   1.5e-05     0.034      10      46 ..     168     208 ..     163     220 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6.8
     DUF2098  11 inTgTvGkVvdikkeed 27 
                 ++T+  Gk+ +ik+  +
  CCG92423.1 128 VGTSPDGKIYKIKQ--N 142
                 6788899***9993..3 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.5e-05
     DUF2098  10 YinTgTvGkVvdikkeedgevwvkLdstd....LyYrvdtL 46 
                 Y++TgT G++ +++ + +gev++ L++t+    L+Y   tL
  CCG92423.1 168 YVGTGTGGRIYKLTPDGKGEVYATLNETHvrclLFYTEGTL 208
                 ***************************98555567766665 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.7e-05      0.22      23     110 ..      92     183 ..      83     222 .. 0.78
   2 ?   -2.2   0.0      0.92   2.1e+03      94     138 ..     342     379 ..     332     393 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.7e-05
   WD40_like  23 kctvlkleslesvsivesfedSvifvkllddd.lilvvt.lDGtillslleneeevenekieedi.stvkviddklliGtnk.Gsiyvfskd 110
                 + +++ ++ + s +++++f +  i +  ++++  i v+t  DG+i + + + ++ev     e  i s+++ ++ ++++Gt + G iy++  d
  CCG92423.1  92 EGKLFRVQKNSSYQLIAKFPEGNISALAMNNKgEIFVGTsPDGKIYKIKQNGQFEVFFDPKEKYIwSIICDDKSNMYVGTGTgGRIYKLTPD 183
                 56788999999999999999999998888887766666526****4444444448887777777769999999*******873589999887 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.92
   WD40_like  94 klliGtnkGsiyvfskdlqleevllgqsseIkeikiennkiysLs 138
                 +lliG++ G  yv+s d        g+  ++++  +++n +++Ls
  CCG92423.1 342 RLLIGSDSGG-YVYSID------SNGKMDKLLKTGSNQNNAFALS 379
                 5555555554.555555......2344444444444455555555 PP

>> Big_3_3  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00017      0.39       5      56 ..     592     647 ..     588     668 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00017
     Big_3_3   5 vtfdlkelpeGkynlvlaakdtfnnqvtksllst.....ilvdntpPtvsisegkki 56 
                 + +d    p+G y l + a+d+ +n++   l+ t     + vdntpP ++i ++ ++
  CCG92423.1 592 FSWDTTGWPDGFYVLKIEASDEKDNPIGMGLSATlesrpFFVDNTPPQIRILNK-ST 647
                 78999999*****************77666555411222689*********333.22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 4626.38
//
Query:       CCG92424.1  [L=62]
Description: hypothetical protein MFUM_690072 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 435.14
//
Query:       CCG92425.1  [L=77]
Description: hypothetical protein MFUM_690073 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 547.79
//
Query:       CCG92426.1  [L=100]
Description: Glycosyltransferase (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-17   61.8   0.0    6.3e-17   61.6   0.0    1.0  1  Glycos_transf_1  Glycosyl transferases group 1
    5.2e-16   59.3   0.0    5.6e-16   59.2   0.0    1.0  1  Glyco_trans_1_4  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.069   13.6   0.0      0.085   13.3   0.0    1.2  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   1.1e-20   6.3e-17      75     151 ..      24     100 .]      17     100 .] 0.96

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 1.1e-20
                      GGEEECCHSSSHHHHHHCESEEEEEESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHH CS
  Glycos_transf_1  75 viflgevsredleellknadifvlpsisEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaea 151
                       ++ g  sr+++ +++++a++fvlpsi +gf  v+ EAma+ lpvi++ + g++++v +g +G++v+  ++e +ae+
       CCG92426.1  24 FTYMGSCSRDKVYSYYHQASVFVLPSIGDGFSCVIPEAMASALPVITTTNNGASDLVDKGLNGYIVPIRSPERIAEK 100
                      68999*********************************************************************986 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   9.4e-20   5.6e-16      55     127 ..      22     100 .]       7     100 .] 0.90

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 9.4e-20
                      .TEEEE---..THHHHHHHH-SEEEE--..---SHHHHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHH CS
  Glyco_trans_1_4  55 erveftGfv..edlaellaaadvfvaPs..egfglkllEamaaglpvVatdvggiaevv..gengllvppgdpealaea 127
                       +++++G    +++ +++++a+vfv+Ps   gf+ ++ Eama++lpv++t+  g++++v  g ng++vp ++pe +ae+
       CCG92426.1  22 GSFTYMGSCsrDKVYSYYHQASVFVLPSigDGFSCVIPEAMASALPVITTTNNGASDLVdkGLNGYIVPIRSPERIAEK 100
                      4688999998566****************99*******************99999*****99************99985 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.4e-05     0.085       2      55 ..      45     100 .]      37     100 .] 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.4e-05
  Glyco_trans_1_2   2 vLnpsrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaek 55 
                      ++ ps  +++++++ Ea+a+  +++t+   g  +l+++g  + ++   ++e +aek
       CCG92426.1  45 FVLPSIGDGFSCVIPEAMASALPVITTTNNGASDLVDKGLNGYIVPirSPERIAEK 100
                      56688999*******************99**********99888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 727.19
//
Query:       CCG92427.1  [L=340]
Description: putative SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-19   69.0   0.0    6.2e-19   68.4   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    1.7e-13   51.0   0.0    2.8e-13   50.3   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    1.8e-12   47.9   0.0    2.9e-12   47.2   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
      5e-12   45.9   0.0      1e-11   44.9   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    1.9e-11   44.5   0.0    3.1e-11   43.8   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    2.9e-11   43.3   0.0    6.3e-11   42.2   0.0    1.5  1  MetW             Methionine biosynthesis protein MetW
    8.3e-07   28.2   0.0    1.3e-06   27.6   0.0    1.2  1  Methyltransf_9   Protein of unknown function (DUF1698)
    2.5e-05   23.7   0.0    7.7e-05   22.1   0.0    1.7  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00048   20.4   0.0    0.00086   19.6   0.0    1.3  1  DRE2_N           Fe-S cluster assembly protein DRE2 N-terminu
    0.00059   19.0   0.0    0.00097   18.3   0.0    1.2  1  DREV             DREV methyltransferase
     0.0074   15.7   0.0      0.013   15.0   0.0    1.3  1  TehB             Tellurite resistance protein TehB
  ------ inclusion threshold ------
      0.032   13.8   0.0       0.12   11.9   0.0    1.9  1  MTS              Methyltransferase small domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   4.2e-22   6.2e-19      20     148 ..     136     263 ..     121     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 4.2e-22
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkpg 112
                      + ++g++Ld+GcG G +l  ++e +++v+g++++p a  ++  + +k +++    +e + +++++d I+l++v+eh++dp + ++++ + lkpg
       CCG92427.1 136 EAKRGKILDVGCGNGQFLYFMKELQWEVEGIEPDPLAARKVIeNGIKVIQST--IEEVDLSKDTYDAITLSHVIEHLRDPVSIIKKLVSALKPG 227
                      57899*****************************988887644222222222..356677999******************************* PP

  Methyltransf_23 113 Gylllseplaslkedrllld.wlylvpagrhisffsa 148
                      G l+   p+     ++++l+ w+ l p  rh+ + s 
       CCG92427.1 228 GKLISISPNPTGTLAKRFLKsWRGLEPP-RHLVLVSP 263
                      *********9988777755538888888.89877665 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   1.9e-16   2.8e-13       1      95 [.     143     231 ..     143     232 .. 0.92

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 1.9e-16
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      LdvGcG+G+++  +++   +v g+++++ + + +   + e+g  ++++++++e++ + ++++D++++s+v++h+ dp +++k+++  LkpgG+l
       CCG92427.1 143 LDVGCGNGQFLYFMKELQWEVEGIEPDPLAARKV---I-ENG--IKVIQSTIEEVDLSKDTYDAITLSHVIEHLRDPVSIIKKLVSALKPGGKL 230
                      8**************999*******999988433...3.334..788*********************************************99 PP

                      E CS
  Methyltransf_11  95 v 95 
                      +
       CCG92427.1 231 I 231
                      7 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   1.9e-15   2.9e-12       1      99 []     143     230 ..     143     230 .. 0.82

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 1.9e-15
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++GcG+G++l  + e   ++e+ g++++p a        +k ++n  ++++ + ++++ +  ++++D++++s+v++hl+d+ ++++++ ++Lk
       CCG92427.1 143 LDVGCGNGQFLYFMKEL--QWEVEGIEPDPLAA-------RKVIENGIKVIQSTIEEVDLS--KDTYDAITLSHVIEHLRDPVSIIKKLVSALK 225
                      8****************..**************.......333333444444444443322..239**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG+l
       CCG92427.1 226 PGGKL 230
                      ***97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   6.7e-15     1e-11       5     114 ..     140     241 ..     136     274 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 6.7e-15
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeie 98 
                       ++lD+GCG+G++++ + e+   + ev Gi+ ++ a ++  en        +++ q+ iee +  l+++++D i+   v+ +l dp +i++++ 
       CCG92427.1 140 GKILDVGCGNGQFLYFMKEL---QWEVEGIEPDPLAARKVIEN-------GIKVIQSTIEEVD--LSKDTYDAITLSHVIEHLRDPVSIIKKLV 221
                      689***************55...67899******998888886.......788**********..889************************** PP

  Methyltransf_31  99 rvlkpggilliedpr....l 114
                      ++lkpgg l++ +p+    l
       CCG92427.1 222 SALKPGGKLISISPNptgtL 241
                      **************955543 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   2.1e-14   3.1e-11       1      97 []     142     228 ..     142     228 .. 0.93

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 2.1e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      +Ld+GcG+G+++  + +   + +v g+++++ + +++ e+       ++++q  +e++++ ++++D++++s++++hl   d   ++k++ ++Lk
       CCG92427.1 142 ILDVGCGNGQFLYFMKEL--QWEVEGIEPDPLAARKVIENG------IKVIQSTIEEVDLSKDTYDAITLSHVIEHLR--DPVSIIKKLVSALK 225
                      8**************988..4**********9988888887......***********************988***98..5669********** PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       CCG92427.1 226 PGG 228
                      **9 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   4.2e-14   6.3e-11      13      99 ..     138     221 ..     130     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 4.2e-14
        MetW  13 pgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldell 99 
                 ++ ++ld+GcG+G++l+++ke  q + +G+e d  +  ++++ G++viq  +++     + +++d + ls  +  +r+p +++++l+
  CCG92427.1 138 KRGKILDVGCGNGQFLYFMKE-LQWEVEGIEPDPLAARKVIENGIKVIQSTIEE--VDLSKDTYDAITLSHVIEHLRDPVSIIKKLV 221
                 5789***************77.9****************************986..3345689*******************99874 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   8.8e-10   1.3e-06     115     216 ..     138     231 ..     128     236 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 8.8e-10
                     TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T.---EEEEEEES-GGG-S-HHHHHHHHHCT CS
  Methyltransf_9 115 kgrtildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahllplgieqlpe.leafdtvfsmGvlyhrrsPldhllqlkdq 208
                     k  +ildvGcgnG +l+ m       v Gi+P  l      a rk++ +  +++    +ie+++   +++d++ +  v+ h r P+  + +l  +
      CCG92427.1 138 KRGKILDVGCGNGQFLYFMKE-LQWEVEGIEPDPL------AARKVIENGIKVI--QSTIEEVDLsKDTYDAITLSHVIEHLRDPVSIIKKLVSA 223
                     55579************9965.456689*****98......7899996666555..569****98789*************************** PP

                     EEEEEEEE CS
  Methyltransf_9 209 lvkgGelv 216
                     l+ gG+l+
      CCG92427.1 224 LKPGGKLI 231
                     ******98 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   5.1e-08   7.7e-05      50     152 ..     141     233 ..     123     240 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5.1e-08
                      EEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHE CS
  Ubie_methyltran  50 kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvl 143
                      k+lDv +G g + + + +    + +v+   i+++ L  + +k+ e+g   i+ +q+  ee++ ++d++D +t+s+ +  + D    +k++   l
       CCG92427.1 141 KILDVGCGNGQFLYFMKEL---QWEVE--GIEPDPL--AARKVIENG---IKVIQSTIEEVDLSKDTYDAITLSHVIEHLRDPVSIIKKLVSAL 224
                      6777777777765544332...23343..3445544..455666666...77899*************************************** PP

                      EEEEEEEEE CS
  Ubie_methyltran 144 kpGGrlvvl 152
                      kpGG+l+ +
       CCG92427.1 225 KPGGKLISI 233
                      *****9876 PP

>> DRE2_N  Fe-S cluster assembly protein DRE2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.7e-07   0.00086      43      93 ..     190     236 ..     186     249 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.7e-07
                 -----SSS--SEEEE---..SS-S----HHHHHHHHTT--TT--EE---H. CS
      DRE2_N  43 lvsLpastYdlvllltdeeeeeeelliprkliqkivkaLkpgGklkgqdgk 93 
                  v L+++tYd + l        e+l  p ++i+k+v+aLkpgGkl + +++
  CCG92427.1 190 EVDLSKDTYDAITLSHVI----EHLRDPVSIIKKLVSALKPGGKLISISPN 236
                 699********9987655....489********************988776 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.5e-07   0.00097      32     185 ..      75     231 ..      59     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.5e-07
        DREV  32 skklsanlfiqlyhalassilslfmsktdinGll.g...rGsmfvlseeqfrkllaiekespasdqedkklldlGaGdGeitkrvaptfeevyatelse 126
                  k  s  +f ql+h++  + l  +  k +++G   +    G+ f l +      l ++++    + +  k+ld+G G+G+    +++   ev   e   
  CCG92427.1  75 FKPQSMTFFSQLWHKIWIASLCSMGYKSQLEGKKlKssvVGNFFCLHPTV---NLEAKRQCRFLEAKRGKILDVGCGNGQFLYFMKELQWEVEGIEPDP 170
                 56678889999999998888888878888888531212258888888764...4666666666778999***************************999 PP

        DREV 127 tmrdrlkkkkynvl.sale.lqetdvkldlilclnlldrcfdplklledirsalepngrvi 185
                     ++   + +v+ s++e ++ ++  +d i+   +++   dp+ +++ + sal+p g+ i
  CCG92427.1 171 LAARKVIENGIKVIqSTIEeVDLSKDTYDAITLSHVIEHLRDPVSIIKKLVSALKPGGKLI 231
                 999999999999984233336666789*****************************99977 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.4e-06     0.013      30     129 ..     138     229 ..     126     240 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.4e-06
                 -S-EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG----.S-EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEE CS
        TehB  30 kpgkvldlgcgqgrnslylsllgydvtawdknensiafleeikekenlknistalydineakld.erydfilstvvlmfleaeripsiienmqectkvg 127
                 k gk+ld+gcg+g+   +++ l ++v+ ++ +  +       k +en  +i+     i+e++l+ + yd i  + v+  l+     sii+ +    k+g
  CCG92427.1 138 KRGKILDVGCGNGQFLYFMKELQWEVEGIEPDPLAAR-----KVIEN--GIKVIQSTIEEVDLSkDTYDAITLSHVIEHLRDP--VSIIKKLVSALKPG 227
                 679************************9987654333.....22333..3444444555555541468888666666666543..35677777777777 PP

                 EE CS
        TehB 128 gy 129
                 g 
  CCG92427.1 228 GK 229
                 75 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.9e-05      0.12      28      65 ..     136     170 ..     130     243 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.9e-05
                 HCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBH CS
         MTS  28 pkelsgkvlDlGcGaGvlgaalakespeaevtlvdvda 65 
                 ++ ++gk+lD+GcG+G     +++ + e  v+ ++ d 
  CCG92427.1 136 EA-KRGKILDVGCGNGQFLYFMKELQWE--VEGIEPDP 170
                 33.7899*********998888876655..55555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2104.87
//
Query:       CCG92428.1  [L=313]
Description: hypothetical protein MFUM_690077 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-20   71.9   0.0    8.8e-20   71.2   0.0    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
    2.6e-12   47.1   0.0    8.6e-12   45.4   0.0    1.7  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.082   12.4   0.0        0.3   10.5   0.0    1.8  1  Glyco_transf_21  Glycosyl transferase family 21
       0.13   12.2   0.0        0.2   11.5   0.0    1.4  1  Glyco_trans_2_3  Glycosyl transferase family group 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0     2e-23   8.8e-20       2     170 .]      15     191 ..      14     191 .. 0.92

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 2e-23
                      EEEEESS-TTTHHHHHHHHHHH.GGCCEEEEEEEEES-SSCHHHHHGGGCH...C-TTEEEEEESSS-HHHHHHHHHHHH--SS...EEEEEES CS
  Glycos_transf_2   2 vviptyNeektlletlesllaq.dpypdfeiivvDDgStDetveileelak...edprvrvirreenvGkagalnaglraatgd...yilflDa 88 
                      +++ tyN ek ++ +l s  +    ++  +i++vD +StD+tv++lee+ k   + + ++++r++ n+G++  ln+g+ a  ++   y+lf +a
       CCG92428.1  15 IIVGTYNSEKDIKPLLSSFQQLtFMHQIEKIVFVDSASTDKTVDLLEEYLKdtqNIHIIKILRLNTNKGYSYCLNQGIYAFGHNipdYVLFSNA 108
                      8999*************999999999*************************999999999***********************9********** PP

                      SEEE-TTHHHHHHHHHHH....TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHCH CS
  Glycos_transf_2  89 Ddepdpdwleklvealekd...gadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrealeell 170
                      D++++p +l +l e+l++    + ++v +++    ++++  e++ r    + l++++ k ++ + + +++g+ +l+++e+le+++
       CCG92428.1 109 DVIYPPYYLDDLFEELKDYqsyNIGIVGPSVLEPIDKENLQEHRPR--NLWGLPQYRDKDQKVYFVNYVHGCSFLVKKEVLEKIG 191
                      ****************998666777888888888888887777776..799999999999999999***************9985 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   1.9e-15   8.6e-12       3     211 ..      12     227 ..      10     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 1.9e-15
  Glyco_tranf_2_3   3 dlavlVptfneedvlgevlesllaqey.prvevvvvv.desdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravk...sdlv 91 
                      ++ ++V t+n e+++  +l s+   +  + +e +v+v   s+++t++ +ee  ++ +++  +++   r  + +g+s+ ln+++ a+    +d+v
       CCG92428.1  12 RIGIIVGTYNSEKDIKPLLSSFQQLTFmHQIEKIVFVdSASTDKTVDLLEEYLKDTQNI--HIIKILRLNTNKGYSYCLNQGIYAFGhniPDYV 103
                      4889*********************9658888777773569**********99999886..555555655889************8888999** PP

  Glyco_tranf_2_3  92 llvDdDtvvePdtlkrllqff...ltpkvgavgtpvfllnrs.tlvsalgalefaerhl.rflaarralg.vltlnGsgslirrevlkelegld 179
                      l+ ++D++  P++l+ l   +   ++ ++g+vg +v+   ++ +l+    +   + + l + +  ++ +  v +++G  +l+  evl+ ++ +d
       CCG92428.1 104 LFSNADVIYPPYYLDDLFEELkdyQSYNIGIVGPSVLEPIDKeNLQEHRPR---NLWGLpQYRDKDQKVYfVNYVHGCSFLVKKEVLEKIGYFD 194
                      ****************99999877777999999777664344144444444...5677732222333444379999***************9** PP

  Glyco_tranf_2_3 180 p.lflltdDyelglrlrragfrtayvpgaavre 211
                      +  fl++d ++ + r+r+agf +a+v+++ + +
       CCG92428.1 195 EdYFLFWDEIDFCTRARKAGFSIAIVNRLSILH 227
                      *99**********************99887665 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   6.8e-05       0.3      29     121 ..      98     195 ..      73     232 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.8e-05
  Glyco_transf_21  29 akydllvisDsdvrvkpdyLeellaaled...pkvglVtslpv.gsdakglaaaleaaflntlagvlqa.klsglgfavGksmalrreaLeaiG 117
                      +  d++++s +dv+ +p yL++l ++l+d    ++g+V   ++   d+++l  +  + + +  +++ +  k+  ++ + G s ++++e+Le+iG
       CCG92428.1  98 NIPDYVLFSNADVIYPPYYLDDLFEELKDyqsYNIGIVGPSVLePIDKENLQEHRPRNLWGLPQYRDKDqKVYFVNYVHGCSFLVKKEVLEKIG 191
                      5569************************943334455443333345555666666666665555555556777888888999999999999998 PP

  Glyco_transf_21 118 Gfea 121
                       f +
       CCG92428.1 192 YFDE 195
                      8876 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.5e-05       0.2       2     142 ..     103     245 ..     102     303 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.5e-05
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaaelas.p..evaivqgpvlvm.nvanwleelaalf.faedhgkdilvrealgrvvpsvGsgaflrrsalqevggw 90 
                      +l+  aD   pp +l ++ +el++ +  +++iv gp++ +   ++ l+e+     + +  ++d  + +++  v  ++G  +++  ++l+++g++
       CCG92428.1 103 VLFSNADVIYPPYYLDDLFEELKDyQsyNIGIV-GPSVLEpIDKENLQEHRPRNlWGLPQYRDKDQKVYF--VNYVHGCSFLVKKEVLEKIGYF 193
                      677778888888888888888886453344444.555544223444555554442566667777777776..55689***************** PP

  Glyco_trans_2_3  91 dgdessvsEDfdmglrlqrkGyrvrfvpeslvkekspl.tlraalrQrkRway 142
                      d d +   +  d++ r++++G+ +  v+      ++p+  +++ l+  k  +y
       CCG92428.1 194 DEDYFLFWDEIDFCTRARKAGFSIAIVNRL-SILHHPNvVIWDNLNKSKTLLY 245
                      **********************99998754.4455555345555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2294.35
//
Query:       CCG92429.1  [L=55]
Description: hypothetical protein MFUM_690078 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0013   18.6   1.3     0.0015   18.4   1.3    1.1  1  OEP       Outer membrane efflux protein


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.3   8.4e-08    0.0015     157     188 .]      18      49 ..      15      49 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.4e-08
         OEP 157 qaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                 +a++ ll+a++ ++ea++++++a+a+Ley++g
  CCG92429.1  18 SARQALLKAKIGYLEAKYNYNAALARLEYAVG 49 
                 6999*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 435.98
//
Query:       CCG92430.1  [L=116]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00015   22.5  12.8    0.00035   21.3  12.8    1.6  1  Tmemb_14     Transmembrane proteins 14C
  ------ inclusion threshold ------
      0.021   15.1   4.2      0.024   14.9   3.8    1.4  1  DUF4181      Domain of unknown function (DUF4181)
       0.11   12.3   2.2       0.11   12.4   1.4    1.3  1  Myelin_PLP   Myelin proteolipid protein (PLP or lipophilin)
       0.47    9.4   7.1       0.38    9.7   6.2    1.3  1  DUF3488      Domain of unknown function (DUF3488)
       0.62   10.0   6.4       0.69    9.8   2.0    2.2  2  DUF2975      Protein of unknown function (DUF2975)
       0.76   10.0   6.6        2.3    8.4   6.6    2.0  1  Oxidored_q4  NADH-ubiquinone/plastoquinone oxidoreductase, ch


Domain annotation for each model (and alignments):
>> Tmemb_14  Transmembrane proteins 14C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3  12.8   1.2e-07   0.00035       4      81 ..      10      97 ..       8     112 .. 0.61

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.2e-07
    Tmemb_14  4 iaygallavGGilgYlk..agSvpSLiaGlllGallllagyllsknkkakelslvislvlllvmgkrl.........lktrkfmpaglv 81
                i yg+ l++ G++gYl   ++ ++SL++G ++G+l ++ gy+++  +    +s+++ +++ l+ + r+          +++k++ a l+
  CCG92430.1 10 ILYGLTLLILGFVGYLSnpQKAKTSLFSGGGMGVLSIVLGYFSK-LPFVLPVSFILIILFSLMLLWRAvitwklvraGNKNKLFAASLL 97
                78**************8445899*******************62.22224444444444444444444000022111444455555554 PP

>> DUF4181  Domain of unknown function (DUF4181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   3.8   7.9e-06     0.024      43     105 ..      43     104 ..      17     110 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.9e-06
     DUF4181  43 iifiilsliiilsreyvdiiilifvflvvlelfRavmewkyereskrYilslaaailflilli 105
                 ++ i+l+++  l +      ++++++++++ l Rav  wk  r  ++ +l +a +++++++l 
  CCG92430.1  43 VLSIVLGYFSKLPFVLPVS-FILIILFSLMLLWRAVITWKLVRAGNKNKLFAASLLSIMLFLS 104
                 6777777777777666554.78999999*************9998887776555555555544 PP

>> Myelin_PLP  Myelin proteolipid protein (PLP or lipophilin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.4   3.6e-05      0.11      73     153 ..       5      89 ..       1     102 [. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.6e-05
  Myelin_PLP  73 laavffllgilllavgfyttgav..kellgefkstvggr..clsavfvvltYvltliWllvlaflavpvfiffnvwstCqsikvl 153
                 +++ ++l+g+ ll+ gf    +   k+ ++ f+   +g   ++ + f  l +vl + ++l+++f+++  +  +++w++ ++ +++
  CCG92430.1   5 ISTGLILYGLTLLILGFVGYLSNpqKAKTSLFSGGGMGVlsIVLGYFSKLPFVLPVSFILIILFSLMLLWRAVITWKLVRAGNKN 89 
                 56778899999999988654443225555667766666533568899*****************************998776655 PP

>> DUF3488  Domain of unknown function (DUF3488)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   6.2   0.00013      0.38      12      66 ..      52     108 ..      40     115 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00013
     DUF3488  12 allplalrlplwvlllaalllvwrlllarrraplpsr..wlllllallavallllsy 66 
                   lp +l +++++++l+ l+l+wr++++++  +  ++  +  + l+ ++++l ll++
  CCG92430.1  52 SKLPFVLPVSFILIILFSLMLLWRAVITWKLVRAGNKnkLFAASLLSIMLFLSLLTL 108
                 4589999999***************77665444444311444444444445555544 PP

>> DUF2975  Protein of unknown function (DUF2975)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.037   1.1e+02      60     109 ..       3      51 ..       1      54 [. 0.74
   2 ?    9.8   2.0   0.00023      0.69      20      53 ..      61      94 ..      51     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.037
     DUF2975  60 rriglaliaaalllaagivalallaelelapgvvllllgvafaslvigll 109
                  ri+  li++ l+l++++++ +l++  + a   +  ++g+ ++s+v+g +
  CCG92430.1   3 ERISTGLILYGLTLLILGFVGYLSNP-QKAKTSLFSGGGMGVLSIVLGYF 51 
                 57888888887777777777777776.55667788888888888888876 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00023
     DUF2975 20 vlllgvlallafvvalvqlwkLlrsirkgevFsp 53
                  +l++l+ l++++  v++wkL+r+ +k++ F +
  CCG92430.1 61 SFILIILFSLMLLWRAVITWKLVRAGNKNKLFAA 94
                45788999999*********************76 PP

>> Oxidored_q4  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   6.6   0.00078       2.3      39      93 ..      59     115 ..      13     116 .] 0.58

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00078
                  HCHHHHHHHHHHHHHHHHHHHHHHHHSST..HHHH..HHHHHHHHHHHHHHHHHHHH CS
  Oxidored_q4  39 svkfylvallFliFDvevvflfpwavslkelglfg..liemllFllillvglvYewk 93 
                  +v+f+l+ l+ l++   +v+ +  + + ++++lf+  l++++lFl +l++g++Y  +
   CCG92430.1  59 PVSFILIILFSLMLLWRAVITWKLVRAGNKNKLFAasLLSIMLFLSLLTLGYLYIAQ 115
                  44455444444444444444333333333344444449****************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       888  (0.0495287); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 836.62
//
Query:       CCG92431.1  [L=364]
Description: GTPase obg [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.8e-49  165.1   0.4    1.6e-48  164.3   0.4    1.4  1  GTP1_OBG     GTP1/OBG
    5.2e-22   78.1   0.0    7.2e-22   77.6   0.0    1.2  1  MMR_HSR1     50S ribosome-binding GTPase
    3.9e-11   42.7   0.0    1.7e-10   40.7   0.0    1.9  1  FeoB_N       Ferrous iron transport protein B
    8.1e-06   25.4   0.0    1.3e-05   24.7   0.0    1.3  1  Arf          ADP-ribosylation factor family
    0.00084   18.9   0.0       0.81    9.2   0.0    2.3  2  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0014   18.2   0.0     0.0038   16.8   0.0    1.6  2  Ras          Ras family
     0.0017   18.3   0.0      0.099   12.5   0.0    2.2  2  RsgA_GTPase  RsgA GTPase
     0.0037   16.3   0.0        0.6    9.0   0.0    2.2  2  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
  ------ inclusion threshold ------
      0.012   15.6   0.0        1.9    8.6   0.0    2.2  2  Dynamin_N    Dynamin family
      0.033   14.4   0.0        2.7    8.2   0.0    2.2  2  Roc          Ras of Complex, Roc, domain of DAPkinase
      0.035   13.9   0.2      0.063   13.1   0.2    1.4  1  NOG1         Nucleolar GTP-binding protein 1 (NOG1)
      0.056   13.2   0.2        6.1    6.5   0.0    2.3  2  ATP_bind_1   Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> GTP1_OBG  GTP1/OBG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.3   0.4     1e-51   1.6e-48       2     155 .]       4     176 ..       3     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 164.3 bits;  conditional E-value: 1e-51
                 EEEEEEEE----------BEEETTCCCEEB-S--------EEEEE-TT--SSGCCCTSSEEE-------BTTTB-------EEEEESTTEEEEETTTT. CS
    GTP1_OBG   2 devkikvkaGkGGdGcvsfrrekyvpkggpdGGdGGkGGdvileadeklntlldlkykkkikAenGenGkgknksGkkgkdlvikvPvgtvvkdeetg. 99 
                 d+v+i +kaGkGG+Gcvsf re + p+ggpdGGdGGkGGdvil++++++++l+ + ++++  Ae+G+ Gkgk+++G++gk+l +++P+g vv++ + g 
  CCG92431.1   4 DYVRILAKAGKGGNGCVSFCREAFRPHGGPDGGDGGKGGDVILKVNPQVSDLTPFFFSPHQFAEDGQAGKGKKRKGRDGKNLELEIPPGVVVYRLTAGh 102
                 99******************************************************************************************8744332 PP

                 ..................EEEEEE-STT-EEEEE-----EE-GGGC-CSSCSS--EEEE-----EEEEEEEECS CS
    GTP1_OBG 100 ..................evladltedgeevlvakGGkgGkGnaafksstnraprfaekGeegeereleLelkl 155
                                   + +++l e+g +++++kGG+gG+Gn +f+s  n+apr+ae+Geege+ ++ Lelk+
  CCG92431.1 103 llhsstdllpipkpgepmDKMVELLEPGMRFILCKGGRGGRGNFQFRSPINQAPRYAEEGEEGESGQFLLELKT 176
                 333333344444444333669***************************************************95 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   4.8e-25   7.2e-22       1     114 []     179     301 ..     179     301 .. 0.86

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 4.8e-25
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETTTTCSHH..... CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg.keielvDtpGliegaseekglgkaflalee.adlillvvdaseeklkp..... 92 
                 +++++G+pN+GKStL+++++ +k +++ +p+tT+ +  g v++++  +i ++D+pGli+ga+ +kglg  fl+++e + ++++v+d++ +++++     
  CCG92431.1 179 DIGFLGMPNAGKSTLLSKISSAKPKIAPYPFTTIRPHVGIVSYEDgLRISFADIPGLIQGAHLGKGLGFYFLRHIErSRILVYVLDLA-DQMTDsiavf 276
                 589***************************************77669**************************99989********98.3343322223 PP

                 ..HHHHHHHHHHH.TTSEEEEEEES CS
    MMR_HSR1  93 ..ldeeleellee.akkplilvlnk 114
                   l+ee+++++++  +kp+i+v nk
  CCG92431.1 277 ymLQEEIQKYNKKlLEKPFIVVGNK 301
                 33557888887778999***99997 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   1.1e-13   1.7e-10       3     155 ..     180     342 ..     178     343 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.1e-13
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT.EEEEEEE----SSSSSSSHHHHHHHHHHHC.TSSSEEEEEEE.GGGHHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg.keveivDlPGiYslsayseeekvardflle.eepdvvvnvvd.atnlernLyLt 98 
                 + ++G pn+Gk+tl+ +++ ak k++ +p +t+  + g +++++  ++++ D+PG    +     + +   fl + e+  ++v v+d a ++  ++ ++
  CCG92431.1 180 IGFLGMPNAGKSTLLSKISSAKPKIAPYPFTTIRPHVGIVSYEDgLRISFADIPGLI--QGAHLGKGLGFYFLRHiERSRILVYVLDlADQMTDSIAVF 276
                 6789**************************************9889*********95..4555555666666654245556666666445555555444 PP

                 HHHHH.........TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHH CS
      FeoB_N  99 lqlle.........lgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieellka 155
                   l e         l++p++++ n+id +  ++++ ++ ++++k g p +++sa++++gi+++l++
  CCG92431.1 277 YMLQEeiqkynkklLEKPFIVVGNKIDLLPIENTKQQAYEFEQKTGYPLLPLSAREGSGIHHFLQQ 342
                 444332223334446799******************************************998875 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   8.6e-09   1.3e-05      16     134 ..     179     311 ..     169     346 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 8.6e-09
                 EEEEEESTTSSHHHHHHHHHHSSCEE.CSS..SSSEEEEEEEE.TTEEEEEEEE-SSGG.......GGGGGGGGCTTESEEEEEEETT-CTTHHHHH.H CS
         Arf  16 rilllGLDnaGKtTilkklkleelvt.tvP..Tigfnveelei.knlkftvwDvGGqek.......lRplWknYfektdavifvvDsadreRleeak.e 102
                  i +lG+ naGK+T+l k+++ + +    P  Ti + v  +++  +l++++ D+ G  +       l  ++ +  e+   +++v+D ad++  + a   
  CCG92431.1 179 DIGFLGMPNAGKSTLLSKISSAKPKIaPYPftTIRPHVGIVSYeDGLRISFADIPGLIQgahlgkgLGFYFLRHIERSRILVYVLDLADQMTDSIAVfY 277
                 5679***************98775543333449**********4469*******99755111111133455555678899*********9854443213 PP

                 HHHHHCT..SGCCTTSEEEEEEE-TTSTTSS-HH CS
         Arf 103 eLkalle..eeelkevallvlaNKqDlpealsee 134
                  L++ ++  +++l e +++v++NK+Dl    +++
  CCG92431.1 278 MLQEEIQkyNKKLLEKPFIVVGNKIDLLPIENTK 311
                 3444444114566699**********97654444 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0019       2.8       2      30 ..     176     204 ..     175     208 .. 0.86
   2 !    9.2   0.0   0.00054      0.81     121     189 ..     291     344 ..     253     348 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0019
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSS CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgai 30 
                 +i  ig++g  ++GK+TL+ ++  ++ +i
  CCG92431.1 176 TIADIGFLGMPNAGKSTLLSKISSAKPKI 204
                 67889****************99877766 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00054
                 TTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHH CS
    GTP_EFTU 121 egvpiivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealv 189
                 ++ p+iv+ NK+D l +++ k+++ e                 ++++ +p+++ Sa +g g+ ++l+++ 
  CCG92431.1 291 LEKPFIVVGNKIDLLpIENTKQQAYEF----------------EQKTGYPLLPLSAREGSGIHHFLQQCR 344
                 334455555666655444444444444................444468999999999999999998875 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.9   2.8e+03       5      18 ..     183     196 ..     181     201 .. 0.83
   2 !   16.8   0.0   2.5e-06    0.0038      86     157 ..     272     344 ..     251     348 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.9
                 EESTTSSHHHHHHH CS
         Ras   5 vGdsavGKtslllr 18 
                 +G  + GK++ll +
  CCG92431.1 183 LGMPNAGKSTLLSK 196
                 789999*****976 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 2.5e-06
                 HHHTHHHHHHHHHHHST..TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHH CS
         Ras  86 sfenvkkwveeikrvae..envpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeell 157
                 s      + eei+++ +   + p+++vGnK+Dl    + +++++ e+ +++g++ l  SA++  ++++ ++++ 
  CCG92431.1 272 SIAVFYMLQEEIQKYNKklLEKPFIVVGNKIDLLP-IENTKQQAYEFEQKTGYPLLPLSAREGSGIHHFLQQCR 344
                 44555567788888888664579**********97.5557788999********************99888765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.041        62     104     122 ..     182     200 ..     158     210 .. 0.81
   2 !   12.5   0.0   6.6e-05     0.099      49     100 ..     295     346 ..     277     351 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.041
                  EECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 104 lvGqSGvGKStLinallpe 122
                  ++G   +GKStL+ ++ + 
   CCG92431.1 182 FLGMPNAGKSTLLSKISSA 200
                  7888899*******99875 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 6.6e-05
                  EEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTS CS
  RsgA_GTPase  49 pvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkdk 100
                   ++v nKiDll  e++ ++  e  +++gy++l +sa++++g+++  +++++ 
   CCG92431.1 295 FIVVGNKIDLLPIENTKQQAYEFEQKTGYPLLPLSAREGSGIHHFLQQCREM 346
                  45666**********88889999999*****************999998875 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0004       0.6      31      50 ..     179     198 ..     158     201 .. 0.86
   2 !    5.0   0.0    0.0068        10     143     228 ..     270     346 ..     262     358 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0004
                 EEEEEE-TTSSHHHHHHHHH CS
        MeaB  31 vvGltGvPGaGkstlvealg 50 
                  +G+ G+P aGkstl++++ 
  CCG92431.1 179 DIGFLGMPNAGKSTLLSKIS 198
                 59**************9986 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0068
                 -SEEEEEEESSTTTTTTT--CCCHHH-SEEEEE---HHHHHHHHHHHHHHHHHCSTTBTTB--EEEEEBCCCTBSHHHHHHHHHHH CS
        MeaB 143 vdtfvvlllpeaGDelqgikkGileiaDiivvnkaDkkeaekaarelraaleleeekekeWrpkvlktsavegeGidelvdaieeh 228
                 +d + v  + +  +e+q   k +le   i+v nk D+  +e+++++        +e+e++   ++l  sa eg Gi++++++ +e 
  CCG92431.1 270 TDSIAVFYMLQ--EEIQKYNKKLLEKPFIVVGNKIDLLPIENTKQQ-------AYEFEQKTGYPLLPLSAREGSGIHHFLQQCREM 346
                 55554444443..79*********************8887777653.......233344445578888999999998888887776 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.015        22       1      22 [.     180     201 ..     180     214 .. 0.83
   2 ?    8.6   0.0    0.0012       1.9     101     167 ..     225     301 ..     213     302 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.015
                 EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlged 22 
                 i ++G+ ++GKS++l ++  ++
  CCG92431.1 180 IGFLGMPNAGKSTLLSKISSAK 201
                 67899**********9998765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0012
                 -SEEEEE---B-SSSGTTS...HHHHHHHSTTEEEEEEEETTS-CCC-CHHH..HHHHHSTTBTT.....EEEEEE- CS
   Dynamin_N 101 kgltlvDlPGldsvnkrdq...elvkeyikkadiilavtsanhdlsnsealf..larevdpkgkr.....tivvltk 167
                  ++++ D PGl++ ++  +       ++i++++i+++v++   ++++s a f  l++e+++ +k+     +ivv +k
  CCG92431.1 225 LRISFADIPGLIQGAHLGKglgFYFLRHIERSRILVYVLDLADQMTDSIAVFymLQEEIQKYNKKllekpFIVVGNK 301
                 578899*******999999888888999******************9965443389999998888788777777666 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.038        57       3      22 ..     181     200 ..     179     213 .. 0.85
   2 ?    8.2   0.0    0.0018       2.7      79     120 .]     255     304 ..     245     304 .. 0.58

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.038
                 EEESSTTSSHHHHHHCHCT- CS
         Roc   3 vlvGdsgvGKtsllkrfved 22 
                  ++G  ++GK++ll+++ + 
  CCG92431.1 181 GFLGMPNAGKSTLLSKISSA 200
                 589***********998765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0018
                 TSCEEEEEEE...GHHHH.....CHHHHHHHHHHHCSSS-EEEEEE-TTT CS
         Roc  79 eaalailvyd...srsse.....nlkeWlkelkkvagkspvilvgnkiDl 120
                 ++ ++++v+d   + +++      l+e +++ +k+  ++p+i+vgnkiDl
  CCG92431.1 255 RSRILVYVLDladQMTDSiavfyMLQEEIQKYNKKLLEKPFIVVGNKIDL 304
                 555666666654322322111113344444455555578*********95 PP

>> NOG1  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   4.2e-05     0.063      15      58 .]     257     303 ..     248     303 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.2e-05
        NOG1  15 davlFllDpseecgysleeQlsLleeikelfan...kpvivvlnKiD 58 
                  + +++lD+  +   s++  + L eei++  ++   kp+ivv nKiD
  CCG92431.1 257 RILVYVLDLADQMTDSIAVFYMLQEEIQKYNKKlleKPFIVVGNKID 303
                 4789**********99999888888887543333339*********9 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.018        26       2      22 ..     183     203 ..     182     222 .. 0.86
   2 ?    6.5   0.0    0.0041       6.1     114     178 ..     249     315 ..     229     349 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.018
  ATP_bind_1   2 vGpaGsGKttfvgalseilel 22 
                 +G++ +GK+t+ +++s+  ++
  CCG92431.1 183 LGMPNAGKSTLLSKISSAKPK 203
                 7*************9987665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0041
  ATP_bind_1 114 iveeLesefalvvvyLvDs.qrltd..ptkfisgllsalsamlrlelPhvvvlnkfDllkek.lekele 178
                 +++++e+  + + vy++D    +td  ++ ++ +  +       le P++vv nk+Dll  + ++++  
  CCG92431.1 249 FLRHIER--SRILVYVLDLaDQMTDsiAVFYMLQEEIQKYNKKLLEKPFIVVGNKIDLLPIEnTKQQAY 315
                 5556664..34455555541345552244444443344444445788***********98664333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2965.72
//
Query:       CCG92432.1  [L=85]
Description: 50S ribosomal protein L27 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-36  122.2   1.4    7.1e-36  122.1   1.4    1.0  1  Ribosomal_L27  Ribosomal L27 protein
  ------ inclusion threshold ------
       0.06   12.9   0.0      0.071   12.7   0.0    1.1  1  GXGXG          GXGXG motif


Domain annotation for each model (and alignments):
>> Ribosomal_L27  Ribosomal L27 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   1.4     8e-40   7.1e-36       1      79 []       2      78 ..       2      78 .. 0.97

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 8e-40
  Ribosomal_L27  1 AhkkagGstkngrdskgkrlGvKkfggqlvkagnIivrQrgtkfhpGenvgiGkdhtlfAlvdGvVkfekkkkrkyvsv 79
                   Ahkk++Gst+ngrds++krlG+K ++g+ vkag+I++rQrgtkfhpG+nvg+G+d tl++lvdG+V ++   +r++v+v
     CCG92432.1  2 AHKKGQGSTRNGRDSHSKRLGIKEYSGEIVKAGHILLRQRGTKFHPGKNVGMGRDFTLYSLVDGKVFWD--GQRRVVHV 78
                   9*****************************************************************999..57899987 PP

>> GXGXG  GXGXG motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.9e-06     0.071      62     109 ..      25      72 ..      22      79 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.9e-06
                 STTTTT-ESSEEEEE--TT-SS-GGGSB-S-.SSTTTT--SEEEEESSB CS
       GXGXG  62 dyvGkglsgGkivikpskeskfkaeeniivG.nvvlygatgGklfirgk 109
                 +y G+ ++ G+i +++   +kf++ +n+ +G + +ly+  +Gk+f  g+
  CCG92432.1  25 EYSGEIVKAGHILLRQRG-TKFHPGKNVGMGrDFTLYSLVDGKVFWDGQ 72 
                 6999999******99988.9***********8899**********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       172  (0.0095934); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 578.73
//
Query:       CCG92433.1  [L=110]
Description: 50S ribosomal protein L21 (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-30  102.9   0.9    9.9e-30  102.8   0.9    1.0  1  Ribosomal_L21p  Ribosomal prokaryotic L21 protein


Domain annotation for each model (and alignments):
>> Ribosomal_L21p  Ribosomal prokaryotic L21 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.9   5.5e-34   9.9e-30       1     101 []       1     103 [.       1     103 [. 0.96

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 5.5e-34
                     XEEEEECSTEEEEESSSEEEEEESS..SSSTTCEEEESSEEE....EE.ECTSSSESSTCEEEEEEEEEE---EEEEEEETTTTEEEEEEE--EE CS
  Ribosomal_L21p   1 myAiietgGkqykVeegdvlkvekl..eaevgdkveldkVllvgskddvkvGaplvegakVeaevvehgkgkkiivfkkkrrknyrrkqghRqky 93 
                     m Aii+tgGkqy+V+eg+ l +e    + ++++++++++Vl+v++ ++ +vG+ +v ga Ve e++++ k++k++ fk++rrk+y+r+ ghRqk+
      CCG92433.1   1 MKAIIQTGGKQYWVSEGEQLSIELPsqQPTQENTIKIEEVLYVEDGQTKHVGTSFVPGAAVELECISEIKAPKVVAFKFRRRKGYHRTVGHRQKL 95 
                     89*********************66446679999************************************************************* PP

                     EEEEEEEE CS
  Ribosomal_L21p  94 tklrItkI 101
                       ++++kI
      CCG92433.1  96 LLVKVKKI 103
                     ******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 813.46
//
Query:       CCG92434.1  [L=447]
Description: Transaldolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-26   92.0   0.0    5.5e-26   91.6   0.0    1.1  1  TAL_FSA        Transaldolase/Fructose-6-phosphate aldolase
  ------ inclusion threshold ------
       0.15   11.7   0.0       0.28   10.8   0.0    1.4  1  Mso1_Sec1_bdg  Sec1-binding region of Mso1


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.0   6.2e-30   5.5e-26       1     259 [.      53     333 ..      53     347 .. 0.86

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 6.2e-30
                 EEEE---HHHHH..........HHHHTT---EEE--HHHHHH..T..TS.-HHHHHHHHHHH..................................... CS
     TAL_FSA   1 lvlDtadrelik..........klleekgiqgvTtNPsliekaik..ykalydeaieeikkegkkvkeaydkLavedilealdll.............. 73 
                 +++Dtad+++++          +++ ++ i+g TtN  l++k ++  y++  +e++e+  ke    k+a+ +L+++  + +l  +              
  CCG92434.1  53 IYVDTADFNELSdlivfsedqdQFVYNEEIDGNTTNQPLVAKIFEnfYREGSQESLEAWTKE---LKKATPSLSLSKAASILYTIingrigieatekyg 148
                 689***************************************999**999999***999988...899999999999999999889999999999999* PP

                 ..H-S-EEEE-S-...-SHHHHHHHHHHHHTT-T..TEEEEEESS...HHHHHHHHHHHHTT--EEEEEE-SHHHHHHHHHH.T-SEEEEBHHHHHTTT CS
     TAL_FSA  74 .gadgrvslEVdarlsddteatieeArrlialyerenvlIKiPat...eeGikAikeLkkeGinvnvTliFsleqalaaaea.gasviSpFvgRiddll 167
                  g++ ++slE  + l+ + e++ + +  l+a     n+++K+P t   + ++ +++eL+k+Gi vn T+ Fs++q++aaa   +     +F+gR+ + l
  CCG92434.1 149 vGRKWEISLELHTGLAASMEESFRAGWCLHASNP--NCFVKVPFTphfPHCFVIARELEKAGIAVNFTATFSARQVVAAALLaNPHRSNVFIGRLSQGL 245
                 ******************************7666..*********99999***************************999863688888********** PP

                 ............S-HHHHHHHHHHHHHHHT-S-EEEEBS--SHHHHHHHHT-SEEEE-HHHHHHHT--HHH...................... CS
     TAL_FSA 168 kkleekdklkgkddgvalvkeiynyykklgysTkvmaasfrnveeveelagcdtvTippkllealakhgkts.ekleeeeieklleklfrlgi 259
                      +++l g++   +  +++ ++   +g++T  + as+r ++     agcd+ T+p k l+++ +++++   +++++e +++le+l   + 
  CCG92434.1 246 -----ESELLGEHVVLEAQRQLRKIRSAYGVQTLNIVASMRRWQTFPITAGCDVYTAPYKALKDFLEQKEVLpGNITSQEQKSYLEELHLKEE 333
                 .....44455555555555555555556679*************************************9995455555555556666554444 PP

>> Mso1_Sec1_bdg  Sec1-binding region of Mso1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.1e-05      0.28       7      33 ..      78     104 ..      72     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.1e-05
  Mso1_Sec1_bdg   7 lssEkDGdteddTlvhraLvkYYdekg 33 
                     ++E DG+t +  lv + + ++Y e  
     CCG92434.1  78 YNEEIDGNTTNQPLVAKIFENFYREGS 104
                    57899******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3330.98
//
Query:       CCG92435.1  [L=487]
Description: Ribulose bisphosphate carboxylase large chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.4e-136  453.3   1.0   4.2e-136  453.0   1.0    1.1  1  RuBisCO_large    Ribulose bisphosphate carboxylase large chai
    7.3e-45  152.0   0.0    1.5e-44  151.0   0.0    1.5  1  RuBisCO_large_N  Ribulose bisphosphate carboxylase large chai


Domain annotation for each model (and alignments):
>> RuBisCO_large  Ribulose bisphosphate carboxylase large chain, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.0   1.0  4.7e-140  4.2e-136       1     299 []     157     464 ..     157     464 .. 0.99

  Alignments for each domain:
  == domain 1  score: 453.0 bits;  conditional E-value: 4.7e-140
                    .HHHHHHHH...T--EEEEE-SSSS---HHHHHHHHHHHHTT-.SEEE--TT-SSBTTB-HHHHHHHHHHHHHHHHHHHSS--EEEEE---SSHHH CS
  RuBisCO_large   1 giaverevlnkegrpilGtiiKPklGLspknyarvvyelllgglDfiKdDEnlnsqpfarlkdrieavaeaikraqdetGekklyalnitaddlee 96 
                    gi++ere+lnk+grp+lG+++KPklGLs+kny+rvvye+l+gglDf+KdDEn+nsqpf+r++dr+ +++ea+++a++etGe k+++ln+ta+++ee
     CCG92435.1 157 GIMMEREYLNKYGRPLLGATVKPKLGLSAKNYGRVVYEALRGGLDFTKDDENINSQPFMRWRDRWLFCMEAVNKAMAETGEIKGHYLNVTAATMEE 252
                    799********************************************************************************************* PP

                    HHHHHHHHHHHHGGEEEEEHHHH-HHHHHHHHHHSTTS..EEEEE-TTTHHHHST--SEE-HHHHHHHHHHHT-SEEE---TTSSSBS--GG.... CS
  RuBisCO_large  97 mlrraefvketggeivlvdvlviGfaaitslrkafrknelllHlHraghgaltrqskhGisfrvlakllRLlGvdhlhtgtvgvgklegdesvvkg 192
                    m++raef+ke+g+ i++vd l++Gf+ai+s++k++rkn++llHlHragh+++trq++hG++frv+ak++RL+Gvdh+h+gtv vgklegd + v+g
     CCG92435.1 253 MYERAEFAKELGSVIIMVD-LTAGFTAIQSMAKWCRKNGVLLHLHRAGHSTYTRQKTHGVNFRVIAKWMRLAGVDHIHAGTV-VGKLEGDLHSVQG 346
                    *******************.**************************************************************.************* PP

                    ..GHHHHHHHHSSEEE-SS-EEE-TT----EEEEESS--TTTHHHHHHHHS---SEEE-HHHHHTSTT-HHHHHHHHHHHHHHHH....HT--HHH CS
  RuBisCO_large 193 fkdtlrekmleedeaegiffeqdlaslkavlpvasgGihagqlpellenlgesdvilqaGGGilgHpdgaaaGakalrqaleaav....eGadlee 284
                    +++tlr++++e+d++ g +feqd+as+++v+pvasgGihagq++ ll +lge d+ilq+GGG++gHpdg+aaGa+a+r+a+e +v    eG+d+++
     CCG92435.1 347 YYKTLRTQYTEADPMLGLYFEQDWASMPGVMPVASGGIHAGQMHLLLTYLGE-DTILQFGGGTIGHPDGIAAGATANRVAVEVMVqarnEGKDILR 441
                    ****************************************************.********************************99999999999 PP

                    H........HTT-HHHHHHHHHX CS
  RuBisCO_large 285 y........AkehkeLarAlesw 299
                    +        +++++ La+A+e+w
     CCG92435.1 442 EgpeilekaCRWSPALAKAIETW 464
                    9999999999************9 PP

>> RuBisCO_large_N  Ribulose bisphosphate carboxylase large chain, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.0   0.0   1.7e-48   1.5e-44       2     120 .]      28     147 ..      27     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: 151.0 bits;  conditional E-value: 1.7e-48
  RuBisCO_large_N   2 yvdedyepketdllaafrvePaegvsveeaaaavAaeSStgtwtevsttkdellkklkakvyeieevee.ekelvkiAYplelFeegsipqlls 94 
                      y+++dy pk+td+laafr+ P+egv++ ea+aavA+eSSt+twt v+t++ ++++++++k+y++e+v++ +++++ iAY+l+lFeegsi+++ s
       CCG92435.1  28 YYNADYVPKDTDILAAFRFVPQEGVEPIEAGAAVAGESSTATWTVVWTDRLTAYEHYQGKCYRVEKVPGtNQYIAFIAYDLDLFEEGSIANMSS 121
                      99*****************************************************************99899********************** PP

  RuBisCO_large_N  95 siaGnifgmkavkalrleDirlPkay 120
                      si+Gn+fg+ka+k+lrleD+r+P++y
       CCG92435.1 122 SIIGNVFGFKALKSLRLEDLRIPPHY 147
                      ***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 3121.60
//
Query:       CCG92436.1  [L=138]
Description: Ribulose bisphosphate carboxylase small chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-41  139.4   0.1    3.7e-41  139.1   0.1    1.1  1  RuBisCO_small  Ribulose bisphosphate carboxylase, small chain
  ------ inclusion threshold ------
       0.19   10.3   0.0       0.23   10.0   0.0    1.1  1  DUF853         Bacterial protein of unknown function (DUF853)


Domain annotation for each model (and alignments):
>> RuBisCO_small  Ribulose bisphosphate carboxylase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1   0.1   4.1e-45   3.7e-41       1      97 []       5     103 ..       5     103 .. 0.99

  Alignments for each domain:
  == domain 1  score: 139.1 bits;  conditional E-value: 4.1e-45
                    -STTTTS----HHHHHHHHHHHHHTT-EEEEEEE-GGGTT-S--EEES---TT---HHHHHHHHHHHHHHSTTSEEEEEEEETTT..TEEEEEEEE CS
  RuBisCO_small   1 fetfsylpdltdeeiakqveyllsqgwapaiEfedkekarnryWtmwklpmfdlkdaaevlaeleecrkaypeeyvrligfDnkk..qsqvlsfiv 94 
                    ++tfsylpd+tdeeia+qv+y+++qgw+++iE++d++++rn+yW+mw+lp+fd+kd+a+v++el++crka+p++y+r+ g+++++  qs+++sfi+
     CCG92436.1   5 QGTFSYLPDFTDEEIAAQVQYIIDQGWSVMIEYTDDPHPRNTYWDMWGLPLFDIKDSAAVMQELNQCRKAFPNHYIRISGYNRQQgyQSTMISFIC 100
                    68**********************************************************************************999********* PP

                    E-- CS
  RuBisCO_small  95 qrp 97 
                    +rp
     CCG92436.1 101 NRP 103
                    **9 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   2.6e-05      0.23     140     175 ..      49      84 ..      46      97 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 2.6e-05
      DUF853 140 deeGllLldlkdLrallkevadnakelskqygnvsk 175
                 d  Gl+L+d+kd  a+++e+++  k + ++y  +s 
  CCG92436.1  49 DMWGLPLFDIKDSAAVMQELNQCRKAFPNHYIRISG 84 
                 778****************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 999.54
//
Query:       CCG92437.1  [L=316]
Description: Protein CbxX, chromosomal [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-18   65.1   0.0    1.8e-17   64.0   0.0    1.6  1  AAA              ATPase family associated with various cellul
    4.4e-12   46.0   0.5    1.4e-11   44.4   0.5    1.9  1  AAA_lid_6        AAA lid domain
    2.2e-05   24.8   0.2       0.15   12.4   0.2    2.5  2  AAA_22           AAA domain
    2.6e-05   23.7   1.0      0.024   14.0   0.4    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    3.6e-05   23.8   0.1    7.6e-05   22.7   0.1    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00056   19.7   0.7     0.0059   16.4   0.6    2.4  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00078   19.4   1.2     0.0013   18.7   0.4    2.0  2  NTPase_1         NTPase
     0.0016   18.8   0.1     0.0033   17.8   0.1    1.7  1  AAA_16           AAA ATPase domain
     0.0036   17.9   0.9       0.03   14.9   0.3    2.6  2  AAA_18           AAA domain
     0.0038   17.0   0.0     0.0073   16.1   0.0    1.5  1  AAA_30           AAA domain
     0.0051   16.9   0.0      0.012   15.8   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
     0.0075   16.6   0.5      0.026   14.8   0.3    2.0  2  AAA_19           AAA domain
     0.0075   16.4   0.0      0.034   14.2   0.0    2.0  2  Torsin           Torsin
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.041   14.0   0.0    1.9  1  AAA_33           AAA domain
      0.016   14.2   0.4      0.083   11.9   0.0    2.0  2  DUF3987          Protein of unknown function (DUF3987)
      0.017   14.9   0.0      0.037   13.8   0.0    1.6  1  AAA_11           AAA domain
       0.02   14.5   0.6        6.2    6.4   0.0    3.0  3  Zot              Zonular occludens toxin (Zot)
      0.024   14.4   0.0       0.46   10.2   0.0    2.3  1  Sigma54_activat  Sigma-54 interaction domain
      0.031   14.3   0.1       0.48   10.4   0.0    2.3  2  ResIII           Type III restriction enzyme, res subunit
      0.034   13.7   0.1       0.11   12.0   0.1    1.8  1  AAA_7            P-loop containing dynein motor region
      0.036   14.0   0.0      0.062   13.2   0.0    1.4  1  APS_kinase       Adenylylsulphate kinase
      0.037   14.0   0.0      0.084   12.8   0.0    1.6  1  ATPase_2         ATPase domain predominantly from Archaea
      0.043   13.1   0.1       0.12   11.6   0.1    1.6  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.045   14.1   0.0       0.12   12.8   0.0    1.7  1  RNA_helicase     RNA helicase
      0.071   12.8   0.0       0.12   12.0   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
       0.11   12.1   0.4       0.83    9.2   0.5    2.2  1  AAA_25           AAA domain
       0.11   12.7   3.4        0.6   10.3   1.1    2.9  2  AAA_28           AAA domain
       0.13   12.0   0.1       0.28   10.9   0.1    1.5  1  AAA_24           AAA domain
       0.17   11.9   0.3       0.48   10.5   0.1    1.8  2  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
       0.19   12.0   0.7        1.3    9.3   0.1    2.6  2  DUF4388          Domain of unknown function (DUF4388)


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0     3e-20   1.8e-17       2     131 ..      81     212 ..      80     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 3e-20
                 EEESSTTSSHHHHHHHHHHHH.......THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel.......gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLltel 93 
                  ++GppGtGKT++a  + k l       + ++++    +l+ +yvg+++ k++e++k+a  +    +lfiDE++al + +  se++ ++++++ Ll+++
  CCG92437.1  81 SFTGPPGTGKTTVAMKMGKILhrlgyvrKGHLVSATREDLVGQYVGHTAPKTKEVIKRA--MG--GVLFIDEAYALYRPE--SERDYGQEAIEILLQAM 173
                 689*****************96666555689*************************997..44..8**********9999..99*************** PP

                 HHTTTSSSTEEEEEEESS.....GGGSTHHHHSTTSSEEEETT CS
         AAA  94 dgvkkkeskvivigatnr.....pdkldpallrgRfdrkieie 131
                 ++ +k   +++vi a+++       +++p l+ +R++++i+++
  CCG92437.1 174 ENNRK---DLVVIFAGYQdrmelFFQMNPGLR-SRITHHIQFP 212
                 *****...588998888877555556677777.9999999987 PP

>> AAA_lid_6  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.5   2.3e-14   1.4e-11       2      62 .]     237     296 ..     236     296 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 2.3e-14
   AAA_lid_6   2 eAeevlrellerrrrdenfGNARfVRnllekairrqadRlattddseltredlmtLtaeDi 62 
                 + +++++e+l+ r++++ f NAR VRn +++ + rqa Rl++ +++++   +lm++  +Di
  CCG92437.1 237 ASRKAFEEYLRLRMQQPLFANARSVRNAIDRFKLRQAARLIE-KGGKIPATELMRIDVSDI 296
                 5688999***********************************.7***************98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2   0.00025      0.15       7      30 ..      79     102 ..      76     125 .. 0.83
   2 !   10.0   0.0    0.0013       0.8      84     132 ..     134     189 ..     108     194 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00025
      AAA_22   7 ilvvtGesGtGKTtllrrlleqld 30 
                 ++  tG++GtGKTt++ ++ + l+
  CCG92437.1  79 HMSFTGPPGTGKTTVAMKMGKILH 102
                 56789**********998877765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0013
      AAA_22  84 qalraravielliiDEaqhlr...s.....eealeeLrsllnlsrkgvqliLvGtpe 132
                 + +++++  ++l iDEa  l    s     +ea+e L + ++++rk++ +i++G ++
  CCG92437.1 134 EVIKRAMG-GVLFIDEAYALYrpeSerdygQEAIEILLQAMENNRKDLVVIFAGYQD 189
                 55677777.9*********98776267888*******888888**********9776 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.4   4.1e-05     0.024      24      49 ..      79     104 ..      60     108 .. 0.89
   2 !    8.1   0.0    0.0027       1.6      85     118 ..     115     152 ..     106     210 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.1e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllppl 49 
                   ++ ++GppG+GKt +a ++ ++l +l
    CCG92437.1  79 HMSFTGPPGTGKTTVAMKMGKILHRL 104
                   7889******************9876 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0027
  Mg_chelatase  85 askaalvGg...gs.kpkpGeislahnGvLfLDElpef 118
                   a++  lvG     +   ++  i +a  GvLf+DE+  +
    CCG92437.1 115 ATREDLVGQyvgHTaPKTKEVIKRAMGGVLFIDEAYAL 152
                   556666664331331444555789**********8533 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   1.3e-07   7.6e-05       4      93 ..      82     177 ..      79     205 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.3e-07
                 EE--SSSSHHHHHHHGGGGBS--EEEEE--.TT--HHHHH--B--.........--------......G-SEEEEESGGG--.HHHHHHHHHHHHSSE CS
       AAA_5   4 LvGppGtgKselaerlaaalnreveyvqlt.rdtteedlkgrreikngttslvdsplvraar......egeilvlDEverae.sevlnsLlslleerr 93 
                   GppGtgK+++a+++ + l r   +  ++  + t+edl+g++   + t+  ++ +++ra+       e+  l+  E er   +e++++Ll+ +e++r
  CCG92437.1  82 FTGPPGTGKTTVAMKMGKILHRLGYVRKGHlVSATREDLVGQYV--GHTAPKTKEVIKRAMGgvlfidEAYALYRPESERDYgQEAIEILLQAMENNR 177
                 68******************555555555526789*********..7888888888888885555555555555555555444566666666666655 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.6   9.8e-06    0.0059      34     117 ..      78     182 ..      52     197 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 9.8e-06
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklkitsgPvlek.agdlaall...........tnleekdvlfideihrlsr.........aveevlysamedf 111
                  h+ ++GpPG Gktt+a+ + k l+    +  g  ++    dl++              +   + vlfide + l r         ++ e+l +ame+ 
  CCG92437.1  78 LHMSFTGPPGTGKTTVAMKMGKILHRLGYVRKGHLVSAtREDLVGQYvghtapktkevIKRAMGGVLFIDEAYALYRpeserdygqEAIEILLQAMENN 176
                 5999**************9999888776666666665413466654311111111000223446799***99988652111121113457899999999 PP

      RuvB_N 112 rldivi 117
                 r d+v+
  CCG92437.1 177 RKDLVV 182
                 999875 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       6.5   3.9e+03      43      64 ..      26      47 ..      17      69 .. 0.58
   2 !   18.7   0.4   2.2e-06    0.0013       2      41 ..      80     119 ..      79     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 6.5
                ---EEEEEET.T--EEEEEETT CS
    NTPase_1 43 rrigFkivdlasgeegiLarve 64
                + + F+i d+ ++ e++L   +
  CCG92437.1 26 QLTQFRIEDVLNDLEKELIGLK 47
                5556666666666666666555 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 2.2e-06
                 EEEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE--- CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkvgGfyteevreg 41 
                 +  TGppG+GKtT+  k+ + l++ g+  +G +++  re+
  CCG92437.1  80 MSFTGPPGTGKTTVAMKMGKILHRLGYVRKGHLVSATRED 119
                 568****************************999999975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   5.5e-06    0.0033      10      88 ..      63     127 ..      60     255 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.5e-06
      AAA_16  10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 ++L+++ + + ++ +  + ++G++G+GK++++ +  + l +  g++ +g+ ++              +re+l+ q   +
  CCG92437.1  63 QRLRELAGVITEPPSLHMSFTGPPGTGKTTVAMKMGKILHRL-GYVRKGHLVSA-------------TREDLVGQYVGH 127
                 6677777655555559999*************9999888877.78877777776.............344444444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3     5e-05      0.03       4     102 ..      83     173 ..      81     179 .. 0.57
   2 ?   -2.2   0.0       9.6   5.7e+03      30      45 ..     239     258 ..     221     282 .. 0.50

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5e-05
      AAA_18   4 tGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakdikk....vv 98 
                 tG+pG+GKtt+a    k l    +   ++++++l+    ++       l+ +++     + +e ++ ++ g++l id   a +++e+ +d++     + 
  CCG92437.1  83 TGPPGTGKTTVAMKMGKIL----HRLGYVRKGHLVSATRED-------LVGQYVGHTAPKTKEVIK-RAMGGVLFIDEAYALYRPESERDYGQeaieIL 169
                 9***********9998876....555566666666666666.......222222222222222222.33345666666666666666666666666666 PP

      AAA_18  99 Ltas 102
                 L+a 
  CCG92437.1 170 LQAM 173
                 6655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 9.6
      AAA_18  30 dvakenglllevdpe....a 45 
                   a+e++l+l  +++    a
  CCG92437.1 239 RKAFEEYLRLRMQQPlfanA 258
                 33444444444444433333 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-05    0.0073      19     100 ..      78     152 ..      66     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-05
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmv 100
                 + +  tGp+GtGKtt+  ++ +++++ g+   g   +++  + +++ +g +a  +++++kr  g        +l +DEa  +
  CCG92437.1  78 LHMSFTGPPGTGKTTVAMKMGKILHRLGYVRKGHLVSATREDLVGQYVGHTAPKTKEVIKRAMG-------GVLFIDEAYAL 152
                 556789**********************888888888888888999999999999999966665.......78888888655 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     2e-05     0.012       5     105 ..      79     175 ..      76     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2e-05
                 -EEEE--TTSSHHHHHHHHHHHTT-......-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHHH CS
       AAA_2   5 silllgptgvGktelakalaellfv..kkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLq 101
                  + ++gp g+Gkt +a ++ ++l+     +k   ++  +    e+ v ++v +   + +  ++++ gG++++DE     + ++s++d  +e + ++LLq
  CCG92437.1  79 HMSFTGPPGTGKTTVAMKMGKILHRlgYVRKGHLVSATR----EDLVGQYVGHTAPKTKEVIKRAMGGVLFIDEAYALYR-PESERDYGQEAI-EILLQ 171
                 5789**********8888888887432223333333333....44459**************************998888.999999998876.79999 PP

                 HHH- CS
       AAA_2 102 ileg 105
                  +e+
  CCG92437.1 172 AMEN 175
                 9887 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   4.4e-05     0.026      11      51 ..      78     116 ..      69     119 .. 0.80
   2 ?   -1.4   0.0       4.4   2.6e+03     104     114 ..     140     152 ..     101     186 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.4e-05
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaft 51 
                  ++  t++pGtGKT+v +++ ++l +lg v  ++  lv+ t
  CCG92437.1  78 LHMSFTGPPGTGKTTVAMKMGKILHRLGYV--RKGHLVSAT 116
                 56788*******************999977..555555555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 4.4
      AAA_19 104 e..llivDEfqdv 114
                    +l++DE+  +
  CCG92437.1 140 MggVLFIDEAYAL 152
                 3357777776544 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   5.7e-05     0.034      13      82 ..      29     106 ..      19     118 .. 0.76
   2 ?   -2.6   0.0         9   5.4e+03      47      61 ..     173     187 ..     165     190 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.7e-05
                 ---HHHHHHHHHHH--S-HHHHHHHHHHHHHHHT-SS-SS.........-EEEEEEE-TTSSHHHHHHHHHHHHSTTGG CS
      Torsin  13 sanleeLekdlekklfGqhlvkklvvksvkaylenekpkk.........pLvlsfhGwtGtGknfvaeiiaenlyrdGl 82 
                 ++++e++ +dlek+l+G   vk+ v k + ++l  ++ +          +L +sf G +GtGk  va  + + l+r G 
  CCG92437.1  29 QFRIEDVLNDLEKELIGLKPVKQRV-KEIASFLMVQRLRElagviteppSLHMSFTGPPGTGKTTVAMKMGKILHRLGY 106
                 6788889999999999999998875.67888877665442222222222699***************999999999885 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9
                 -SS-SS-EEEEEEE- CS
      Torsin  47 nekpkkpLvlsfhGw 61 
                 +e+ +k Lv+ f G+
  CCG92437.1 173 MENNRKDLVVIFAGY 187
                 678999999999997 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.9e-05     0.041       4      27 ..      82     108 ..      80     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.9e-05
      AAA_33   4 lvGlpGsGKstlaerl...lkklgavl 27 
                 + G+pG+GK+t+a ++   l +lg+v+
  CCG92437.1  82 FTGPPGTGKTTVAMKMgkiLHRLGYVR 108
                 78************9855555666654 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014     0.083      31      62 ..      71     103 ..      56     105 .. 0.80
   2 ?    0.1   0.1      0.53   3.2e+02     272     294 ..     226     249 ..     210     274 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
     DUF3987  31 y.teplnLytlvvapsGerKSpvdklvlrplee 62 
                   tep++L++  ++p+G++K++v+  + + l++
  CCG92437.1  71 ViTEPPSLHMSFTGPPGTGKTTVAMKMGKILHR 103
                 348********************9888777765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.53
     DUF3987 272 elepitlrlsdeAkerfneffn.e 294
                  l+ ++++++d+ +++f+e+ + +
  CCG92437.1 226 MLKQQMYTFDDASRKAFEEYLRlR 249
                 345689999999999999997744 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.2e-05     0.037      22      43 ..      82     112 ..      66     182 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.2e-05
      AAA_11  22 iqGPPGtgKTktivellsqll.........s 43 
                 + GPPGtgKT++ +++ + l+          
  CCG92437.1  82 FTGPPGTGKTTVAMKMGKILHrlgyvrkghL 112
                 68*************9998865544444330 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.045        27       5      20 ..      82      97 ..      79     111 .. 0.88
   2 ?    6.4   0.0      0.01       6.2      74     110 ..     137     169 ..     106     185 .. 0.72
   3 ?   -0.2   0.0       1.1   6.8e+02      27      64 ..     256     295 ..     244     310 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.045
         Zot  5 vtGapGsgKtsgavkk 20
                +tG+pG+gKt +a+k+
  CCG92437.1 82 FTGPPGTGKTTVAMKM 97
                69***********987 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.01
         Zot  74 kwatidkgallviDEcqeifpvrakegrkdpevinaf 110
                 k+a    g++l+iDE+  ++  +++ +   +e i+ +
  CCG92437.1 137 KRA---MGGVLFIDEAYALYRPESERD-YGQEAIEIL 169
                 333...5*************9999853.344444444 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.1
         Zot  27 kegRkiitnidGlrlerieqvlgekvs..tarliridnpe 64 
                  + R++   id ++l+++++++++  +  + +l+rid  +
  CCG92437.1 256 ANARSVRNAIDRFKLRQAARLIEKGGKipATELMRIDVSD 295
                 4678888899999999999988765555588999999333 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00077      0.46      18     102 ..      71     149 ..      56     158 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00077
                      HCTSS..S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS.-BEHHHHHTTTSEEEEETG CS
  Sigma54_activat  18 vaktd..lsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAek.ekkGlfekadgGtlfLDei 102
                      v++ +  l++  tG  GtGK+++a ++ +  +r         ++a+ e+l+           + G ++ + k  +++a gG+lf+De 
       CCG92437.1  71 VITEPpsLHMSFTGPPGTGKTTVAMKMGKILHRLGYVRKGHLVSATREDLVG-----Q----YVGHTApKTKEVIKRAMGGVLFIDEA 149
                      4433335888999***********9986655554433222333455555543.....2....33333203336888899999998886 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0008      0.48      26      71 ..      79     125 ..      46     143 .. 0.79
   2 ?    0.8   0.0       0.7   4.2e+02       4      29 ..     158     182 ..     155     200 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0008
                 EEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHH CS
      ResIII  26 rglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtl 71 
                 ++ +  + GtGKT va+k+ + l++ g+ +   l+ + r++l+ q  
  CCG92437.1  79 HMSFTGPPGTGKTTVAMKMGKILHRLGYVRkGHLVSATREDLVGQYV 125
                 66788899***************999988745666677778887765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.7
                 E-HHHHHHHHHHT......TTSEEEE CS
      ResIII   4 lreyQeeaienlleklkskrdkrgli 29 
                  r+y +eaie ll++++ +++k +++
  CCG92437.1 158 ERDYGQEAIEILLQAME-NNRKDLVV 182
                 58999**********99.55554443 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00018      0.11      35     132 ..      79     175 ..      75     178 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpggkklvvFvDD...lnmpakekygaqppiellRqll 130
                 ++ ++Gp GtGKt++++++ k l++  y+ +   + + t    + + +      ++k+v   ++g   v+F+D+   l  p+ e+   q++ie+l q +
  CCG92437.1  79 HMSFTGPPGTGKTTVAMKMGKILHRLGYVRKGHLV-SATREDLVGQYVGHTAP-KTKEVIKRAMG--GVLFIDEayaLYRPESERDYGQEAIEILLQAM 173
                 7889**************99999966666555444.44555555555544444.44455544444..37777774445667777777777777777777 PP

       AAA_7 131 dy 132
                 ++
  CCG92437.1 174 EN 175
                 76 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0    0.0001     0.062       5      34 ..      80     109 ..      76     143 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0001
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EE CS
  APS_kinase   5 vwltGlsgsGKstianalekkLvekgisvy 34 
                 + +tG  g+GK+t+a+++ k L++ g+  +
  CCG92437.1  80 MSFTGPPGTGKTTVAMKMGKILHRLGYVRK 109
                 679********************9997554 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00014     0.084       8     124 ..      65     184 ..      62     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00014
    ATPase_2   8 lkeleeilerepneiyfiYGpegsGKtaLlkeiienledkdk..yviyyialreesiskldefieeeeekkklekalgiavpkaeleeilk..eksklv 102
                 l+el  ++ + p+  +  +Gp g GKt++ +++ + l+ +++  +   ++a re+   ++       + k+ +++a+g ++  +e+ +++   +++ + 
  CCG92437.1  65 LRELAGVITEPPSLHMSFTGPPGTGKTTVAMKMGKILHRLGYvrKGHLVSATREDLVGQYVGH-TAPKTKEVIKRAMGGVLFIDEAYALYRpeSERDYG 162
                 788889999999999999**************9999988888767788999999999998887.45556666799999999999999999996677777 PP

    ATPase_2 103 fkaielllekikkkgkkiiiii 124
                 ++aie ll+++++++k +++i+
  CCG92437.1 163 QEAIEILLQAMENNRKDLVVIF 184
                 999**************99998 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1    0.0002      0.12       7     130 ..      83     185 ..      80     193 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0002
     DUF2075   7 tGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrllt.ks 104
                 tG +GtGKt v++++   l       ++   ++ + lv + re+l ++      ++++ k +++i+++                v+ +DEA  l   +s
  CCG92437.1  83 TGPPGTGKTTVAMKMGKIL-------HRLGYVRKGHLVSATREDLVGQY----VGHTAPKTKEVIKRAM-------------GGVLFIDEAYALYRpES 157
                 799***********99888.......45555667889999999999988....9999999999999998.............89999999999988566 PP

     DUF2075 105 dqaekqseenqlkelmkrak..vvvalv 130
                 +++  q+  + l + m++++  +vv++ 
  CCG92437.1 158 ERDYGQEAIEILLQAMENNRkdLVVIFA 185
                 6666677777888888874456666555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0    0.0002      0.12       3      51 ..      82     128 ..      80     139 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.0002
  RNA_helicase   3 lyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqe 51 
                   ++Gp+g+GK+t+a + + ++l +l++ +k++++s ++++d + +Y g++
    CCG92437.1  82 FTGPPGTGKTTVAMK-MGKILHRLGYVRKGHLVS-ATREDLVGQYVGHT 128
                   79*************.666666777777677655.67777777777665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00021      0.12      51      76 ..      81     106 ..      60     175 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00021
   IstB_IS21  51 vllGpsGvGKshlaialgveavragl 76 
                  ++Gp+G+GK+ +a+ +g+   r g+
  CCG92437.1  81 SFTGPPGTGKTTVAMKMGKILHRLGY 106
                 689***************87655443 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.5    0.0014      0.83      38      53 ..      82      97 ..      75     183 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0014
      AAA_25 38 laGapgtGKttlaldl 53
                ++G+pgtGKtt+a+ +
  CCG92437.1 82 FTGPPGTGKTTVAMKM 97
                68***********987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.1     0.001       0.6       4      20 ..      82      98 ..      79     192 .. 0.90
   2 ?    0.9   0.0      0.81   4.8e+02      48      70 ..     214     237 ..     201     266 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.001
      AAA_28  4 itGgestGKTtlleaLa 20
                +tG+++tGKTt++ ++ 
  CCG92437.1 82 FTGPPGTGKTTVAMKMG 98
                8**********996554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.81
      AAA_28  48 wv.edllafaervleeqleeeaaa 70 
                 ++ e+l+a+ae++l++q+ +  +a
  CCG92437.1 214 YTfEELIAIAELMLKQQMYTFDDA 237
                 446799999999999999887776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00047      0.28       7      27 ..      82     101 ..      77     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00047
      AAA_24   7 iyGpsgiGKTtlakelgpkpl 27 
                  +Gp+g+GKTt+a ++  k+l
  CCG92437.1  82 FTGPPGTGKTTVAMKM-GKIL 101
                 68************99.7665 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       7.7   4.6e+03      33      56 ..      21      46 ..      18      73 .. 0.49
   2 ?   10.5   0.1    0.0008      0.48       9      28 ..      87     106 ..      80     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7.7
                EEEEESSCCCCHHTTEB-HHHH...CC CS
                xxxxxxxxxxxxxxxxxxxxxx...xx RF
        CbiA 33 vDaDpqannlaileglendiep...dl 56
                vD+D q +  + +e + nd+e+   +l
  CCG92437.1 21 VDVDEQLTQFR-IEDVLNDLEKeliGL 46
                45555544444.444444444433333 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0008
                 TSSHHHHHHHHHHHHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxx RF
        CbiA   9 GvGKTtlaanLaralarrgl 28 
                 G+GKTt+a +++++l r g+
  CCG92437.1  87 GTGKTTVAMKMGKILHRLGY 106
                 9**************99886 PP

>> DUF4388  Domain of unknown function (DUF4388)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0         3   1.8e+03      37      47 ..     106     134 ..      83     159 .. 0.69
   2 ?    9.3   0.1    0.0022       1.3      11      89 ..     168     262 ..     163     264 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 3
     DUF4388  37 ffrdGrivyA..................e 47 
                 ++r+G++v+A                  e
  CCG92437.1 106 YVRKGHLVSAtredlvgqyvghtapktkE 134
                 78888888887777777666666666663 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0022
     DUF4388  11 ellqllelsrktGvLeiespgeeariffrdGrivyA................ealfdllswkeGtFrfeqdaal.aeetirlslenllleglrrld 89 
                  llq +e++rk  v+   ++++++++ff+     +                  a+++l+ +k+  ++f++ + + +ee  rl++++ l+  +r ++
  CCG92437.1 168 ILLQAMENNRKDLVVIFAGYQDRMELFFQMNPGLRSrithhiqfpsytfeelIAIAELM-LKQQMYTFDDASRKaFEEYLRLRMQQPLFANARSVR 262
                 59**************************9543333334444999999996655555555.789999999999988999999999999988888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.51
# Mc/sec: 1848.58
//
Query:       CCG92438.1  [L=340]
Description: Phosphoribulokinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-39  134.1   0.0    7.3e-39  133.5   0.0    1.3  1  PRK         Phosphoribulokinase / Uridine kinase family
  ------ inclusion threshold ------
      0.017   14.4   0.0      0.034   13.4   0.0    1.4  1  Zeta_toxin  Zeta toxin
      0.018   15.6   0.0      0.036   14.6   0.0    1.5  1  AAA_18      AAA domain
      0.048   13.2   0.0      0.067   12.7   0.0    1.2  1  GTP_EFTU    Elongation factor Tu GTP binding domain
      0.057   13.6   0.1       0.17   12.0   0.1    1.9  1  AAA_33      AAA domain
       0.19   12.2   0.0       0.25   11.9   0.0    1.3  1  ABC_tran    ABC transporter
       0.21   11.4   0.1       0.36   10.6   0.1    1.3  1  AAA_29      P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.5   0.0   2.9e-42   7.3e-39       2     192 ..       7     183 ..       6     188 .. 0.96

  Alignments for each domain:
  == domain 1  score: 133.5 bits;  conditional E-value: 2.9e-42
         PRK   2 IgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleerkrakekevsflspeandfdllyevlkelkegkkvdkpiYsheteeaa 100
                 +g+ g+S+aGk+t++  l++++g                + ++ +d++  +rk++ +  +++l p+ n +d +++ l +l+ g  + kp+Y+h+++ ++
  CCG92438.1   7 LGIVGDSAAGKSTLTGGLVNLLGAD------------RVTHICTDDYHKYDRKERAQIGITALHPDCNYLDIMEQHLERLHYGLPILKPVYDHSNGTLV 93 
                 69*********************44............45599********************************************************* PP

         PRK 101 pdkeeliegadvlviEGlhalydervaelldlkiyvdisidlelarklqRDiaeRGrsleavldsilrrkpdyvnyikpqfseadliiqrvp 192
                 +  +e i +++ +++EGl+++y + ++++ d+k+y+ + ++l+ ++k++RD+++RG++ e+vl++++ r pd ++yi+pq + ad+i+   p
  CCG92438.1  94 R--PEYIMPKEFIIVEGLLGFYTRVMRQFYDVKVYLNPPEELRRIWKIKRDTTKRGYTAEQVLEELVKREPDSEAYIRPQREFADIIVTFYP 183
                 *..************************************************************************************98766 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.3e-05     0.034      14      58 ..       2      45 ..       1      55 [. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
  Zeta_toxin 14 erPklillgGqpGAGKselaellkdelerqgnvvrldpDdlRelh 58
                +rP+++ ++G ++AGKs+l   l + l+ +++v ++ +Dd+ ++ 
  CCG92438.1  2 RRPIMLGIVGDSAAGKSTLTGGLVNLLG-ADRVTHICTDDYHKYD 45
                58*************************7.9***********9985 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.4e-05     0.036       3     112 ..       9     138 ..       7     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldaleenss........................aleegknl 77 
                 + G +++GK+tl+  L ++lg  +++++++++++  +++ +    +  +   + + + ld++e++ +                          +  + +
  CCG92438.1   9 IVGDSAAGKSTLTGGLVNLLG-ADRVTHICTDDYHKYDRKER--AQIGITALHPDCNYLDIMEQHLErlhyglpilkpvydhsngtlvrpeYIMPKEFI 104
                 89**************99962.68899999999999999999..8888888888888888888888888889999999*99****99999766777777 PP

      AAA_18  78 vidghlaeleseaakdikkvvLtaspeelleRlek 112
                 +++g+l+ +   ++ ++  v ++++p e l+R+ k
  CCG92438.1 105 IVEGLLGFYTRVMRQFYD-VKVYLNPPEELRRIWK 138
                 999999999999999999.8888888888888754 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.6e-05     0.067       5      45 ..       6      46 ..       2      73 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.6e-05
                EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCH CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDt 45
                 +gi+g+  +GK+TLt+ L+  +ga++  +  +++ +  D+
  CCG92438.1  6 MLGIVGDSAAGKSTLTGGLVNLLGADRVTHICTDDYHKYDR 46
                689******************99998876665554434443 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   6.6e-05      0.17       4      44 ..       9      53 ..       6     162 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
      AAA_33  4 lvGlpGsGKstlaerllkklg...avllssdtlrr.rlfgtdqqs 44
                +vG +++GKstl  +l++ lg   ++++ +d++++   +++ q  
  CCG92438.1  9 IVGDSAAGKSTLTGGLVNLLGadrVTHICTDDYHKyDRKERAQIG 53
                6999*************9999888899999998885444444444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.7e-05      0.25      13      41 ..       6      34 ..       2     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.7e-05
                EEEEEESTTSSHHHHHHHHTTSS--SEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkpteGe 41
                +++ivG++ aGKStL   l +ll  +  +
  CCG92438.1  6 MLGIVGDSAAGKSTLTGGLVNLLGADRVT 34
                589************99888887654444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00014      0.36      27      49 ..       9      31 ..       2      36 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00014
      AAA_29 27 ltGpsGsGKSTllDAiqalLvpa 49
                ++G+s +GKSTl   +  lL ++
  CCG92438.1  9 IVGDSAAGKSTLTGGLVNLLGAD 31
                89**********98888888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2310.45
//
Query:       CCG92439.1  [L=679]
Description: Transketolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.8e-143  475.3   0.0   1.2e-142  474.9   0.0    1.1  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
      2e-46  157.9   0.0    9.1e-46  155.8   0.0    2.0  2  Transket_pyr     Transketolase, pyrimidine binding domain
    2.7e-10   40.2   0.0    5.2e-10   39.3   0.0    1.5  1  Transketolase_C  Transketolase, C-terminal domain
  ------ inclusion threshold ------
      0.041   12.8   0.0       0.27   10.1   0.0    2.0  2  E1_dh            Dehydrogenase E1 component
        0.1   11.5   0.1       0.16   10.9   0.1    1.2  1  PORR             Plant organelle RNA recognition domain


Domain annotation for each model (and alignments):
>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  474.9   0.0  3.2e-146  1.2e-142       2     334 .]      19     350 ..      18     350 .. 0.99

  Alignments for each domain:
  == domain 1  score: 474.9 bits;  conditional E-value: 3.2e-146
                      HHHHHHHHHHHHHHHHHHHT-S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-SS CS
  Transketolase_N   2 dkkavnaiRvLavDavekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrqlgskt 95 
                      ++ avn iR L++Dav+ka+sGhPG+p+glad+a vl++++l  +P++p+w dRDRfvLs Ghas+llYsll+L+Gy+l+ledlk+frq+gskt
       CCG92439.1  19 EQLAVNVIRGLSMDAVQKANSGHPGTPMGLADAAVVLWTRFLSFDPEAPDWPDRDRFVLSCGHASMLLYSLLFLSGYGLTLEDLKNFRQFGSKT 112
                      5789****************************************************************************************** PP

                      -SS--TTTSTT--S---STTHHHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTE CS
  Transketolase_N  96 pGhPelghtagvevttGPLGqGianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidG 189
                      +GhPe+ght+gve+ttGPLGqGi+navg+alae+ la++ynk + ++++h+tyv+++Dg+lmeG+s+e++slag+l+LgkLivlyDdn i+idG
       CCG92439.1 113 AGHPEYGHTPGVETTTGPLGQGISNAVGMALAERILASRYNKADIELFNHWTYVFASDGDLMEGISHESCSLAGHLGLGKLIVLYDDNGITIDG 206
                      ********************************************************************************************** PP

                      EGGGT--S-HHHHHHHTT-EEEEETTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTSTTTTTSGGGTSS---HHHHHHHHHHTTS-TT-TS CS
  Transketolase_N 190 eteisftedvakrfeaygWhvievedgedveaikaaieeakaekdkPsliklrtviGygspakagtedvhGapLgedevaalkkklGfdpeksf 283
                      +t+ +++++v++rf  ygW+v++  +g+d ++++aa  +ak++ dkP li  +t iGygsp k+++e++hG pLge+ev+ +k++lG+ p+ sf
       CCG92439.1 207 HTSLAYSDNVQERFLGYGWEVQQ-INGNDRKQVEAAFLRAKMSMDKPHLIIAKTHIGYGSPHKQDSEKAHGEPLGEEEVRLAKERLGLPPNVSF 299
                      *********************98.8999****************************************************************** PP

                      ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT--- CS
  Transketolase_N 284 evpeevydaykekvaegakaeeeWeekfaaykkkapeeaaelerrlsgelP 334
                      +vpeev + ++  +++g++++++W e++++y+kk+p+ea ele+ l++elP
       CCG92439.1 300 YVPEEVKEYFRVFAQKGKQRRKQWLELYESYSKKYPKEALELEKALKNELP 350
                      ************************************************998 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.8   0.0   2.5e-49   9.1e-46       2     176 ..     365     536 ..     364     537 .. 0.98
   2 ?   -1.0   0.0      0.35   1.2e+03      65     100 ..     642     676 ..     639     679 .] 0.82

  Alignments for each domain:
  == domain 1  score: 155.8 bits;  conditional E-value: 2.5e-49
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT...TEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHH CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg...egrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqa 95 
                   +ia+r+a++ +++++  + +++++++aD++ +++++ k+ ++  +   +gr+i++g++E+++++++ G+al+++  ++++++F+ F++    y+++ 
    CCG92439.1 365 PIATRAASGSVINAIFSKVDSLIGGSADLTPSNNTKPKEAKDITKgnyAGRYIHYGVREHGMAAIMSGMALHKG-IRPYGGTFLIFSD----YMRPT 456
                   799*****************************************99***************************6.*************....***** PP

                   HHCHHHHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  96 irsgeakgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                   +r ++a +kl+v+ ++t+++ig+gedGp+hq++e++  lr+ip+++v+rP+d+aet + ++ a++ ++++P++l+l++++l+
    CCG92439.1 457 MR-LAAMMKLPVIyIFTHDSIGLGEDGPTHQPVEQLTALRAIPNMTVFRPCDAAETVEGWKVALE-KTDGPTALILTRQALP 536
                   **.**************************************************************.678**********997 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.35
                   HHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHHHCHH CS
  Transket_pyr  65 vGaalagpllviveaqFgdFangAqiyadqairsge 100
                   vG+   g +  ++  ++ +F  +A+ ++++airs+ 
    CCG92439.1 642 VGLDHFG-ASAPYKVIYQQFGITAEKVMEAAIRSLG 676
                   5666677.688999******************9765 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   1.4e-13   5.2e-10       9     124 .]     561     667 ..     553     667 .. 0.93

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1.4e-13
                      TSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSSEEEEEEE- CS
  Transketolase_C   9 gkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdgldapvkrvggp 102
                        +v+l+++Gs+v+ aleA + L++++i ++Vv++++ + + ++  +     + + v+    + r+++++  + a+++  + gld++v+ +  +
       CCG92439.1 561 DFQVILIGTGSEVHIALEAQKLLAQKQIPTRVVSMPSWDLFLQQPAQ-----YIEEVIPSRIRARVAVEAGATLAWNK--WIGLDGEVVGLDHF 647
                      568**************************************999998.....99************************..89****99988555 PP

                      SSSSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C 103 dviepgsaeelekafgldaeki 124
                        + +++++ +++ fg++aek+
       CCG92439.1 648 --GASAPYKVIYQQFGITAEKV 667
                      ..99***************997 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   7.6e-05      0.27      96     208 ..     124     246 ..     101     272 .. 0.83
   2 ?   -0.3   0.0      0.12   4.2e+02     143     166 ..     456     479 ..     454     502 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.6e-05
                 BEEE-SSTTTHHHHHHHHHHHHH..........HHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--E.EEEEEEESEETTEEHHHH-S---GGG..T CS
       E1_dh  96 ilggngivgaqvplvaGialaak..........iegkkevailliGDgAanqGdvyealnlaalwklpv.ifvveNNkygisTeaekasaskeladrar 183
                 + ++ g++g   + + G+ala +          ie  ++ + ++  Dg   +G+ +e+  la   +l   i     N++ i  +++ a+ s+++ +r  
  CCG92439.1 124 VETTTGPLGQGISNAVGMALAERilasrynkadIELFNHWTYVFASDGDLMEGISHESCSLAGHLGLGKlIVLYDDNGITIDGHTSLAY-SDNVQERFL 221
                 6778899999988888999999999999888888888999**************************98758889999999987777665.688889999 PP

                 TTTS-EEEEETTSHHHHHHHHHHHH CS
       E1_dh 184 gvgipglrVdgnDplavyeAvkfAa 208
                 g+g    +++gnD   v +A   A+
  CCG92439.1 222 GYGWEVQQINGNDRKQVEAAFLRAK 246
                 **************99999976665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.12
                 HHHHHHHTT--EEEEEEEESEETT CS
       E1_dh 143 alnlaalwklpvifvveNNkygis 166
                 ++ laa++klpvi++     +g++
  CCG92439.1 456 TMRLAAMMKLPVIYIFTHDSIGLG 479
                 688**********99988888876 PP

>> PORR  Plant organelle RNA recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   4.4e-05      0.16     118     174 ..     283     343 ..     277     372 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.4e-05
        PORR 118 kiehlkrdlGLPdDfreslvpkypdlFrlveted...gkevLelvswdpe.lavsalekkk 174
                 +++  k+ lGLP +    + ++ +++Fr+  ++    +k++Lel +  ++  +  ale +k
  CCG92439.1 283 EVRLAKERLGLPPNVSFYVPEEVKEYFRVFAQKGkqrRKQWLELYESYSKkYPKEALELEK 343
                 688899************************99889999******87655548888888773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 5047.02
//
Query:       CCG92440.1  [L=200]
Description: Phosphoglycerate mutase, PhoE family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-41  140.8   0.0      5e-41  140.5   0.0    1.0  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.5   0.0   2.8e-45     5e-41       1     172 [.       4     178 ..       4     194 .. 0.94

  Alignments for each domain:
  == domain 1  score: 140.5 bits;  conditional E-value: 2.8e-45
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..H CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidaiysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeype 99 
                 lyL+RH +t+wn e+r+qgrtd+pL e G+e+A+    +l++ +i++iysSpl R rqTa + a al++p+e+++gL E+d+G+weg+t  e+ +  p 
  CCG92440.1   4 LYLARHCKTAWNLEHRIQGRTDIPLCEIGIEEAKMNVGFLEALKISKIYSSPLTRGRQTATIYATALEVPYETRDGLLEMDMGEWEGKTALELSALKPS 102
                 7************************************************************************************************** PP

                 SHHHHHHHHH-GGG-B..S-BHHHHHHHHHHHHHHHHHHTTTSE.EEEEE-HHHHHHHHHHHHT--GGGGGGB--- CS
  His_Phos_1 100 eleawlrdpadvrppg..gEsledvaaRvaaaleelaarheget.vlvVsHggvirallarllglpleelrrleld 172
                  + +w +dp +v+  +   E +   ++R+ +++ ++ +++++e+ vlv+ H+ +  +l ++l gl+l+++++  ++
  CCG92440.1 103 LYLQWIEDPRNVPLVPgsKEDVFTAQRRILSTILAIYKENDEEKnVLVIIHKYICSLLRCALQGLELNHFKKEIIE 178
                 ***********999887899****************999998888************************9987663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1309.55
//
Query:       CCG92441.1  [L=234]
Description: Phosphatase/phosphohexomutase HAD superfamily [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-18   66.6   0.0    3.7e-18   66.2   0.0    1.1  1  HAD_2           Haloacid dehalogenase-like hydrolase
    1.2e-05   25.8   0.0    2.1e-05   25.0   0.0    1.5  1  HAD             haloacid dehalogenase-like hydrolase
    0.00013   22.4   0.0     0.0013   19.1   0.0    2.0  1  Hydrolase       haloacid dehalogenase-like hydrolase
     0.0059   16.6   0.0      0.011   15.8   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   8.3e-22   3.7e-18       1     178 []       7     199 ..       7     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 8.3e-22
       HAD_2   1 iiFDlDgTll.dteeliiqafnelleeygls.elseeelrkliglslre.....llrklgeseeeee..kieellrkyneekkk....kevkpydgvke 86 
                 ii D+DgT++  ++e+++ a ne+++  g++ ++s ee+  l++l+ ++     ++r+l +s  eee  ki  l+ + +++++     ++ ++ +g+ke
  CCG92441.1   7 IILDFDGTIAfSEKEAHLPACNEAFRTLGIPiQWSWEEFIALLELPGNQarmehAYRQLYPSVAEEElkKISNLWAETKKKLYIekhvHKARLREGIKE 105
                 899******857789*****************************997661111156666666665558955555555555444343447999******* PP

       HAD_2  87 lLeeLkeagyklgivTsksreaveekleql..giesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikviav 178
                 l+e+  ++++ ++iv+ + +e++e +l ++  ++  +++ i+++   +k   d  +++k+le+l+l +e+vi ++Ds +++ +a kagik++av
  CCG92441.1 106 LIEQALQERIAIAIVSISIEEQIEAFLIRHlpELRPHIHPILGKRAGTKTASDSPLYRKCLEELGLGAEQVIAIEDSMNGLRCALKAGIKCVAV 199
                 ****99*******************99665347889********99999999999************************************997 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   4.7e-09   2.1e-05       1     187 [.       7     189 ..       7     190 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4.7e-09
         HAD   1 alfDfDgTL.ldgdsle.....lllrfllrrgaprlwralreklllal........frellrldraglaelleallaglseelaaelerfv........ 77 
                 +++DfDgT+ + +  ++     + +r l+   +++ w++  + l+l          +r+l  +  ++  + +++l                        
  CCG92441.1   7 IILDFDGTIaFSEKEAHlpacnEAFRTLGIPIQWS-WEEFIALLELPGnqarmehaYRQLYPSVAEEELKKISNL---------------Waetkkkly 89 
                 689******55556666776653333222222222.444444433333222422233333333222222222222...............133333334 PP

         HAD  78 ..aevirpklldpgalellaahraaGdrvvvvSgglrplvepll.aelg.....adevlatelevddrltgelglegkpvrgegkvaalrewlaaegeg 168
                    +v++ + l++g++el+++++++ + +++vS ++++ +e++l ++l      ++ +l+ +       t+    +++p ++    ++l+e       g
  CCG92441.1  90 ieKHVHKAR-LREGIKELIEQALQERIAIAIVSISIEEQIEAFLiRHLPelrphIHPILGKR-----AGTKT--ASDSPLYR----KCLEE------LG 170
                 422444444.77********************************999999989888889995.....66777..99999999....99999......88 PP

         HAD 169 idleevvayGDspsDlpll 187
                 +  e v+a+ Ds++ l ++
  CCG92441.1 171 LGAEQVIAIEDSMNGLRCA 189
                 8888899999998877665 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.8e-07    0.0013       2     210 .]       5     193 ..       4     193 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.8e-07
                 SEEEEESBTTTBCHH.....HHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttge.....psvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqs 95 
                 k++++D+dGT+  +e     p + ++                       +      ++++ ++f ++      + g++  +++   + +l   + +++ 
  CCG92441.1   5 KAIILDFDGTIAFSEkeahlPACNEA-----------------------FRTLGIPIQWSWEEFIAL----LELPGNQARMEHA--YRQLYPSVAEEEL 74 
                 89999999999977732222222222.......................233333446666777772....3344555555555..7777777777778 PP

                 HCHHHHHH.TTHHHHHHHHH.HTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHH.HHHHHTT..GGGESEEEEHHCESSTTTSHHHHHHHHHHHTST CS
                 xxxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  96 qgrtvall.qaralavftia.dplkvkpeaaeavasLkaagievvlltgdnpetae.raanqlG..ddyfdaviasdietvakpspegkvaaireLqgk 189
                 +  +  +   ++ l + + + ++ +++++++e++++  +  i +++++ + +e  e  ++++l   + +++ ++++   t    +   +++ ++eL+  
  CCG92441.1  75 KKISNLWAeTKKKLYIEK-HvHKARLREGIKELIEQALQERIAIAIVSISIEEQIEaFLIRHLPelRPHIHPILGKRAGTKTASDSPLYRKCLEELGLG 172
                 888888882233333333.258889***********8888899*****999999995555557778888888888888888888999************ PP

                 GGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 190 peevamVGDgvnDaaalaaAg 210
                  e+v++++D++n++  + +Ag
  CCG92441.1 173 AEQVIAIEDSMNGLRCALKAG 193
                 *************98887776 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.4e-06     0.011       8      53 ..     160     204 ..     157     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.4e-06
                     HHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS CS
  Hydrolase_like   8 emydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvt 53 
                     ++y+  le+lg+  e+v++i D+    +++A +aG+k+v+V    t
      CCG92441.1 160 PLYRKCLEELGLGAEQVIAIEDS-MNGLRCALKAGIKCVAVPNDYT 204
                     6899*******************.9***************977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 1700.25
//
Query:       CCG92442.1  [L=124]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-30  103.8   0.1    9.9e-30  103.6   0.1    1.0  1  DUF488    Protein of unknown function, DUF488
     0.0038   17.4   0.1      0.011   15.9   0.1    1.7  2  DUF3135   Protein of unknown function (DUF3135)


Domain annotation for each model (and alignments):
>> DUF488  Protein of unknown function, DUF488
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.1   1.1e-33   9.9e-30       2     121 ..       9     115 ..       8     116 .. 0.94

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 1.1e-33
      DUF488   2 lervyd.llkkdgvrvlvDVRlwPrSrnpgfskealkedlkeagiaYvwlkelgpsrelrkwfkhdp.rweefferYaaeleskeaakealeelkelak 98 
                 ++rvy+ ++ +dg+r+lvD RlwPr    g+ ke+lk d         w+k+ +ps+elrkwf hdp +we+f ++Y +el sk   ++a++e  + + 
  CCG92442.1   9 IKRVYEePSAQDGYRILVD-RLWPR----GVHKEQLKIDF--------WAKDWAPSDELRKWFAHDPqKWEAFSKKYIEELISK---ENAIKEHLSNCP 91 
                 79*****************.*****....***********........*******************99*************94...368888888887 PP

      DUF488  99 kg.vaLlcaekdperchrvvlaey 121
                 +  v+Ll+++kd+ ++++vvl+++
  CCG92442.1  92 SPtVTLLYSAKDTVHNQAVVLKSF 115
                 778******************987 PP

>> DUF3135  Protein of unknown function (DUF3135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.2e-06     0.011       5      35 ..      51      81 ..      47      90 .. 0.87
   2 ?   -1.9   0.0      0.46   4.1e+03      33      54 ..     100     121 ..      95     122 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-06
     DUF3135  5 fdeLvaLakedPealealrqelieelIesap 35
                 deL++  ++dP++ ea+ ++ ieelI++ +
  CCG92442.1 51 SDELRKWFAHDPQKWEAFSKKYIEELISKEN 81
                69*************************9875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.46
     DUF3135  33 sapeemqrrLrglqfqiDmqls 54 
                 sa+ +  ++   l++ i+ +l+
  CCG92442.1 100 SAKDTVHNQAVVLKSFIETKLK 121
                 6777777777888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 837.16
//
Query:       CCG92443.1  [L=127]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 951.57
//
Query:       CCG92444.1  [L=531]
Description: Phosphoglycerate dehydrogenase and ACT domains [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-59  200.8   0.0    1.8e-59  200.1   0.0    1.4  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    2.1e-35  121.3   0.0    3.6e-35  120.6   0.0    1.4  1  2-Hacid_dh      D-isomer specific 2-hydroxyacid dehydrogenase
    1.6e-08   34.2   0.9    4.6e-08   32.7   0.1    2.2  2  ACT             ACT domain
    4.8e-05   23.6   0.0    9.5e-05   22.6   0.0    1.5  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
  ------ inclusion threshold ------
      0.015   15.8   4.3       0.81   10.3   0.1    3.8  3  ACT_4           ACT domain
      0.078   13.4   0.0       0.28   11.6   0.0    1.9  2  NAD_binding_7   Putative NAD(P)-binding
        0.1   12.1   0.0       0.86    9.1   0.0    2.1  2  HIM1            HIM1
       0.11   12.9   0.0       0.75   10.3   0.0    2.3  2  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.1   0.0     8e-63   1.8e-59       2     178 .]     111     286 ..     110     286 .. 0.98

  Alignments for each domain:
  == domain 1  score: 200.1 bits;  conditional E-value: 8e-63
                   HHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHHHH-SEEEE CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv.sleellaesDivsl 97 
                   +lllal+r++++a+ ++++gew ++k++ g el gk +GiiGlGr+G +vakr+ afgmkv ++d++ ++++ +++l+velv +leel+ + D++sl
    CCG92444.1 111 SLLLALARNVPQAHVSMQRGEW-KRKNFEGVELFGKVLGIIGLGRVGMEVAKRALAFGMKVKCFDPYLSPTK-VKNLQVELVnNLEELFFDLDFLSL 205
                   79********************.99********************************************998.9999998887************** PP

                   -S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  98 hlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   h+plt et+++in+e+l+k+k+g  l+N+aRGgl+  e+Lle Lksg++agaalDv+++ep+p+d pl+ lpnviltPH+a
    CCG92444.1 206 HVPLTSETEGIINKENLKKCKQGIRLVNCARGGLIRIEDLLELLKSGWVAGAALDVYDPEPPPADFPLRGLPNVILTPHLA 286
                   *******************************************************************************98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   0.0   1.6e-38   3.6e-35       1     134 []       7     318 ..       7     318 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.6 bits;  conditional E-value: 1.6e-38
                 EEEEST.CHHHHHHHHHTTEEEEEES..CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   1 vlileplreeelellkeegvevevkd..ellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystes 97 
                 +li +p++++++  l+  g ++++ +   l + +ll+ ++++d++ivrs+tk++++v+ea +kLkvi+ragvG+DnvD++aa+e+Gi+V+n+pg +t++
  CCG92444.1   7 ILIADPISKKGILELETSG-QIRIDEkyGLKEPDLLSIISEYDGVIVRSQTKISRKVIEAGKKLKVIGRAGVGIDNVDVEAATENGIVVMNTPGGNTIA 104
                 6899999999999999944.66666666999******************************************************************** PP

                 HHHHH.............................................................................................. CS
                 xxxxx.............................................................................................. RF
  2-Hacid_dh  98 vAElt.............................................................................................. 102
                 +AE+t                                                                                              
  CCG92444.1 105 TAEHTfslllalarnvpqahvsmqrgewkrknfegvelfgkvlgiiglgrvgmevakralafgmkvkcfdpylsptkvknlqvelvnnleelffdldfl 203
                 *************************************************************************************************** PP

                 ...................................................................................T-BHHHHHHHHHHHHH CS
                 ...................................................................................xxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ...................................................................................aaTeeaqeniaeeaae 118
                                                                                                    a+T eaqen+++e+a 
  CCG92444.1 204 slhvpltsetegiinkenlkkckqgirlvncarggliriedllellksgwvagaaldvydpepppadfplrglpnviltphlaASTVEAQENVGTEIAG 302
                 *************************************************************************************************** PP

                 HHHHHHTTCCGTTBCS CS
                 xxxxxxxxxxxxxxxx RF
  2-Hacid_dh 119 nlvaflkgespanavn 134
                  +++f+  +  +navn
  CCG92444.1 303 MIIDFFCHGIIRNAVN 318
                 **************98 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.3   5.1e+03      16      37 ..      39      60 ..      39      64 .. 0.82
   2 !   32.7   0.1     2e-11   4.6e-08       3      65 ..     460     520 ..     458     522 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.3
                HHHHHHHHTTSEEEEEEEEEES CS
         ACT 16 rvfgaladrgiNidsieqrsse 37
                ++++++++++  i++ +++ s+
  CCG92444.1 39 DLLSIISEYDGVIVRSQTKISR 60
                5789999999999999888876 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 2e-11
                 EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTT CS
         ACT   3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkl 65 
                 l+++ +DrPG+ ++v+++l+++ +Ni+ ++ ++ +    + +++++  d  + +evl+++++ 
  CCG92444.1 460 LLLENKDRPGIVGKVGTILGEHAVNIAAMSLARAKA--QEKAISILNLDNIPSPEVLAQIRNT 520
                 67799*******************************..6******************999975 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   4.2e-08   9.5e-05       2      89 ..     147     234 ..     146     250 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.2e-08
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-..SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE- CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavyn..rtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidg 89 
                    +g+iGlG  G++ a++ l+ g+kv +++  +++ kv++l   ++++++++eel+ +ld+  + v+ +++++ +i++  l+++k+g  l+++
     CCG92444.1 147 LGIIGLGRVGMEVAKRALAFGMKVKCFDpyLSPTKVKNL---QVELVNNLEELFFDLDFLSLHVPLTSETEGIINKeNLKKCKQGIRLVNC 234
                    69**************************55555555555...599*****************************99878888888777766 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.27   6.1e+02      25      51 ..      70      96 ..      69      97 .. 0.89
   2 ?    3.1   0.1     0.066   1.5e+02      22      50 ..     392     418 ..     390     422 .. 0.86
   3 ?   10.3   0.1   0.00036      0.81      12      78 ..     463     526 ..     459     527 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.27
       ACT_4 25 qviseekanivsvnaktrkkdglaeik 51
                +vi  +++ i +v +++  ++g++ ++
  CCG92444.1 70 KVIGRAGVGIDNVDVEAATENGIVVMN 96
                799**************9889998876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.066
       ACT_4  22 ditqviseekanivsvnaktrkkdglaei 50 
                 +++ +i+  ++n+++v++++  + +++ei
  CCG92444.1 392 NVMFLINTLGINVKEVKMSS--AGEFTEI 418
                 57788999***********9..6778776 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00036
       ACT_4  12 eaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLsrviakLraipgVisV 78 
                 e +dr+g+++++ +++ e+ +ni ++++   k+++ a   i++   d     +v+a++r+++++++V
  CCG92444.1 463 ENKDRPGIVGKVGTILGEHAVNIAAMSLARAKAQEKA---ISILNLDNIPSPEVLAQIRNTEDIYNV 526
                 568************************9997765333...222222222335677777777777777 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.8   6.4e+03      25      38 ..      61      74 ..      39      98 .. 0.71
   2 ?   11.6   0.0   0.00013      0.28       7      92 ..     144     235 ..     140     237 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.8
  NAD_binding_7 25 klleagakvtvvap 38
                   k++eag+k++v+  
     CCG92444.1 61 KVIEAGKKLKVIGR 74
                   45556666655544 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00013
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvapevkeele........elvk.laeeelekdlegadlviaatddrelneriaeaakarrilvnva 92 
                    gk   ++G G+v+++ +++ l++g kv+  +p +   ++        elv+ l+e  ++ d+   ++ ++  ++  +n++  +++k+   lvn+a
     CCG92444.1 144 GKVLGIIGLGRVGMEVAKRALAFGMKVKCFDPYL---SPtkvknlqvELVNnLEELFFDLDFLSLHVPLTSETEGIINKENLKKCKQGIRLVNCA 235
                    66677************************88884...3311212223333322333334444455555555555567888888888666688876 PP

>> HIM1  HIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00038      0.86      75     140 ..     299     364 ..     286     383 .. 0.84
   2 ?    0.2   0.0      0.21   4.8e+02      46      67 ..     389     412 ..     377     418 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00038
        HIM1  75 eLnlklakeFantedKklvivTsfNnkllskvspYfrtKlklEndLktklepklkeLviLRPGPlv 140
                 e+   ++  F+++  ++ v v s+  k+ls +spY+    kl   +++ ++++++eLvi   G + 
  CCG92444.1 299 EIAGMIIDFFCHGIIRNAVNVPSVDPKVLSILSPYMALGEKLGIFMSQWIPNRIDELVIYFSGKIN 364
                 555667888999999999*****************************************8777665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.21
        HIM1  46 sdvetl..istLGstsaeekkskv 67 
                 ++v+++  i+tLG + +e k s++
  CCG92444.1 389 NEVNVMflINTLGINVKEVKMSSA 412
                 555554339******999998765 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00033      0.75      21      71 ..     158     204 ..     156     215 .. 0.86
   2 ?   -1.1   0.0       1.2   2.6e+03      29      42 ..     255     268 ..     243     291 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00033
                     HHHHHHHHCTSEEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEE CS
  UDPG_MGDP_dh_C  21 diieeLleegaevkiyDPkvkeeaveaeleekgvevvdsleealkgadaiv 71 
                     +++++ l+ g++vk +DP+ ++ +v++     +ve+v++lee + + d + 
      CCG92444.1 158 EVAKRALAFGMKVKCFDPYLSPTKVKN----LQVELVNNLEELFFDLDFLS 204
                     678889999****************98....589*******9988887765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.2
                     CTSEEEEE-SSTHH CS
  UDPG_MGDP_dh_C  29 egaevkiyDPkvke 42 
                     +ga +++yDP  ++
      CCG92444.1 255 AGAALDVYDPEPPP 268
                     5999******8655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3784.14
//
Query:       CCG92445.1  [L=217]
Description: Transcriptional regulator ArsR family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-07   30.9   0.0    2.7e-07   30.1   0.0    1.5  1  HTH_24    Winged helix-turn-helix DNA-binding
    1.3e-05   25.0   0.0    5.7e-05   22.9   0.0    1.9  2  MarR_2    MarR family
    0.00032   20.5   0.0    0.00073   19.4   0.0    1.6  1  MarR      MarR family
     0.0019   18.1   0.0     0.0041   17.0   0.0    1.5  1  HTH_11    HTH domain
     0.0074   16.2   0.0      0.018   15.0   0.0    1.6  1  PadR      Transcriptional regulator PadR-like family
     0.0079   16.3   0.0      0.017   15.3   0.0    1.5  1  HTH_34    Winged helix DNA-binding domain
  ------ inclusion threshold ------
      0.029   14.3   0.0      0.061   13.2   0.0    1.6  1  HTH_5     Bacterial regulatory protein, arsR family
      0.039   14.0   0.0      0.083   13.0   0.0    1.5  1  HTH_20    Helix-turn-helix domain
      0.043   13.8   0.0      0.095   12.7   0.0    1.6  1  HTH_45    Winged helix-turn-helix


Domain annotation for each model (and alignments):
>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.3e-10   2.7e-07       4      47 ..      12      55 ..       9      56 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.3e-10
      HTH_24  4 tdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                 +++IL +L+ np++s+ eL ++++lS   v+++   Le+eG++
  CCG92445.1 12 SRYNILFELKINPGLSIGELTKKINLSYMGVKQHCASLEKEGFL 55
                6789**************************************97 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.8e-08   5.7e-05       7      55 ..      13      59 ..       8      66 .. 0.92
   2 ?   -1.1   0.0      0.88   1.8e+03       9      24 ..     107     122 ..     103     130 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.8e-08
                HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2  7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrp 55
                 + +L++L  +pg  l++gel+++ +ls   v ++++ L++ G++e+r+
  CCG92445.1 13 RYNILFELKINPG--LSIGELTKKINLSYMGVKQHCASLEKEGFLETRK 59
                6789*********..********************************95 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.88
                 HHHHHHHCTTTSEEEH CS
      MarR_2   9 rvLaaLgrrpgrdltv 24 
                 r++++++r +g+ l++
  CCG92445.1 107 RLIHWIYRTDGESLSQ 122
                 6889999999985533 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.6e-07   0.00073       4      51 ..      12      59 ..       9      63 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.6e-07
                HHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR  4 tqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRsk 51
                +++ iL+ l+ +++ls+ eL kk+++s + v      Lek+G++e +k
  CCG92445.1 12 SRYNILFELKINPGLSIGELTKKINLSYMGVKQHCASLEKEGFLETRK 59
                6799****************************************9665 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.1e-06    0.0041       4      44 ..      15      54 ..      13      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.1e-06
      HTH_11  4 qilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                 il  L+ + g +s+ eL +++n+S + v +++++Le+ g+
  CCG92445.1 15 NILFELKINPG-LSIGELTKKINLSYMGVKQHCASLEKEGF 54
                68888977777.**************************994 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   9.2e-06     0.018      39      68 ..      47      76 ..      30      81 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.2e-06
                HHHHHTTSEEEEEE-STSSS-EEEEEESHC CS
        PadR 39 krLekeglveseweesgegpprkyYrlTda 68
                ++Lekeg++e++++++++g+p  +Y lT++
  CCG92445.1 47 ASLEKEGFLETRKRQKSVGRPEIVYCLTEK 76
                58**************************97 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   8.3e-06     0.017       3      64 ..      14      76 ..      13      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.3e-06
      HTH_34  3 lavlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYievdkefk.gkkprtllriTpe 64
                 ++l  L  +   +  el +++++++     h   Lek g++e +k  k  ++p +++ +T++
  CCG92445.1 14 YNILFELKINPGLSIGELTKKINLSYMGVKQHCASLEKEGFLETRKRQKsVGRPEIVYCLTEK 76
                56777777888889999**************************9997551689********98 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     3e-05     0.061       3      46 ..      12      56 ..      10      57 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3e-05
                HHHHHHHHHTTSS.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  3 tRlkILklLaege.lcvcelaeelglsqstvShHLkkLreaGLVe 46
                 R  IL+ L  ++ l+++el+++++ls   v +H + L+++G++e
  CCG92445.1 12 SRYNILFELKINPgLSIGELTKKINLSYMGVKQHCASLEKEGFLE 56
                6889**************************************987 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.2e-05     0.083      11      59 ..      12      60 ..       4      62 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.2e-05
                HHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECT CS
      HTH_20 11 vRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvre 59
                +R+ il +L+ + gl+ +el + + ls   + +H + Le+ g++e+++ 
  CCG92445.1 12 SRYNILFELKINPGLSIGELTKKINLSYMGVKQHCASLEKEGFLETRKR 60
                7999******************************************986 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.8e-05     0.095      15      62 ..      20      77 ..      10      88 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.8e-05
      HTH_45 15 is.egeakkTkimykanLsykllnkYLdmLvekgli.........kkskekYvlTekG 62
                ++ + + +  ++ +k nLsy  +++    L ++g++            +  Y+lTek 
  CCG92445.1 20 LKiNPGLSIGELTKKINLSYMGVKQHCASLEKEGFLetrkrqksvGRPEIVYCLTEKA 77
                333778888999***********************87766655546677889999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1547.86
//
Query:       CCG92446.1  [L=613]
Description: Transcription elongation factor GreA fused to uncharacterized associated domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-19   67.5   4.1    2.2e-18   66.1   4.1    1.7  1  GreA_GreB_N   Transcription elongation factor, N-terminal
    4.8e-17   61.6   0.2    9.9e-17   60.6   0.2    1.5  1  GreA_GreB     Transcription elongation factor, GreA/GreB, C-t
  ------ inclusion threshold ------
       0.15   11.9   0.0       0.32   10.8   0.0    1.5  1  Phage-tail_3  Putative phage tail protein


Domain annotation for each model (and alignments):
>> GreA_GreB_N  Transcription elongation factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   4.1   3.7e-22   2.2e-18       3      70 ..     455     522 ..     453     522 .. 0.95

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 3.7e-22
                  E-HHHHHHHHHHHHHHHHXHHHHHHHHHHHHHHHSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHTEE CS
  GreA_GreB_N   3 lTkegyekleeeLeelktverpeiaeaikeareeGDlsENaeYdaAkeeqaeiearIreLedkLanae 70 
                  ++ + +e+ ++eL+el +++ pe++++i+ ar+ GDl+EN eY+aAke qa + +r +eLe+++++a+
   CCG92446.1 455 VSWSSLEEKKRELDELVRKKIPENSKEIAHARSYGDLRENHEYKAAKEMQAVLMRRKAELESMISKAR 522
                  5667899**********************************************************996 PP

>> GreA_GreB  Transcription elongation factor, GreA/GreB, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.2   1.7e-20   9.9e-17       4      76 ..     532     605 ..     529     606 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.7e-20
                 SS--TT-EEEEE-.SS--EEEE----TTT-BS-SSB--TTSHHHHHHTT--TT-EE---BTTB.---EEEEEEX CS
   GreA_GreB   4 dvVtfGstVtledldtgeeetytiVgpdeadpskgkiSveSPlGkaLlgkkvGdevevkapsg.kikveIlkie 76 
                  vV +G++V +++++t+   ++ i+g+++++pskg+iS+++  G++Llg+k Gd+v+v + +g +++++I ki+
  CCG92446.1 532 SVVNIGTVVHYTNVKTNTPSSIAILGAWDSNPSKGIISYLAAFGQSLLGHKPGDVVQVSMEDGsTKEIRIDKIT 605
                 79*************************************************************9999***9997 PP

>> Phage-tail_3  Putative phage tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.4e-05      0.32     134     163 ..     575     605 ..     571     607 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.4e-05
  Phage-tail_3 134 ppeylalepGDvveltda.gragvvritrie 163
                   + + l ++pGDvv ++ + g+++++ri++i+
    CCG92446.1 575 GQSLLGHKPGDVVQVSMEdGSTKEIRIDKIT 605
                   567899**********99999*******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4075.55
//
Query:       CCG92447.1  [L=107]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-10   39.4   7.1    8.7e-10   38.6   7.1    1.4  1  Zn-ribbon_8  Zinc ribbon domain
  ------ inclusion threshold ------
      0.015   15.3   0.4      0.024   14.6   0.4    1.4  1  zf-C2H2_6    C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   7.1   9.7e-14   8.7e-10       1      31 [.       1      31 [.       1      33 [. 0.98

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 9.7e-14
  Zn-ribbon_8  1 MPiYeYrCeeCghefevlqsisdapltaCPe 31
                 MP+Y Y+C +Cg+efe++qsi+++pl +CPe
   CCG92447.1  1 MPTYLYECSKCGKEFEIFQSITEPPLLCCPE 31
                 ******************************6 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.4   2.7e-06     0.024       2      16 ..       6      20 ..       5      23 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.7e-06
   zf-C2H2_6  2 heCsvCsksFpslqa 16
                +eCs C+k+F+ +q+
  CCG92447.1  6 YECSKCGKEFEIFQS 20
                9*********98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 751.15
//
Query:       CCG92448.1  [L=80]
Description: Ferredoxin [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-10   40.1   0.0    2.8e-10   39.9   0.0    1.1  1  NIL       NIL domain


Domain annotation for each model (and alignments):
>> NIL  NIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.6e-14   2.8e-10       5      72 ..       8      71 ..       4      72 .. 0.93

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.6e-14
                EEEES-S-SS-HHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTT-EEE CS
         NIL  5 ltftgksavePllshlvrqlglevnIlqGsveriqgtpfGqlvielsgsqesiaaalqylrkrnvdvE 72
                l+  g   + Pl+ +l+r ++l +nI  +s+       +G + iel+g++e i++a+ +l++++v+vE
  CCG92448.1  8 LSLDGHLCKRPLIWELSRNFDLIFNIRNASIT----GEIGIIGIELEGNPEVIKEAVSWLESQGVHVE 71
                6677888899*********************7....99*****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 639.88
//
Query:       CCG92449.1  [L=96]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-17   62.3   0.0    6.1e-17   62.0   0.0    1.1  1  ThiS      ThiS family
  ------ inclusion threshold ------
      0.033   14.5   0.0      0.075   13.4   0.0    1.7  1  Urm1      Urm1 (Ubiquitin related modifier)


Domain annotation for each model (and alignments):
>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   6.8e-21   6.1e-17       1      77 []      10      96 .]      10      96 .] 0.97

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 6.8e-21
                EEETTCCHHHHTCEEEEESSTSBHHHHHHHHHHHTCHHG.........TTTTEEEEETTEEEGC.CTTTSB--TTCEEEEEESTTC- CS
        ThiS  1 vllfaelrelageeelelaegstvaelleaLgerypela.........lerrvavavNgeivpr.lwldtelkdgDevailppVaGG 77
                v++++ lr l++++e++  +g+t++ell +L+++ p++           +r+v+v++Nge++++ ++ldt+l+  Dev+i+p++aGG
  CCG92449.1 10 VRIPTPLRGLTQNKEVVYVSGKTIKELLLNLETQCPGILnricnekgeIRRFVNVYLNGEDIRFlNGLDTPLQQRDEVSIVPAIAGG 96
                789999999**99***********************************99**************88********************9 PP

>> Urm1  Urm1 (Ubiquitin related modifier)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.3e-06     0.075      50      96 .]      50      96 .]       4      96 .] 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.3e-06
                HHCBSTTSB-TTEEEEETTCEHHHCTCCCSB--TTEEEEEEETTT-- CS
        Urm1 50 evFlekdkvrPGilvLindaDwellgekdyelkdkDkivFistlhGG 96
                 +  ek+++r  + v +n  D+  l+ +d+ l+++D+++ + ++ GG
  CCG92449.1 50 RICNEKGEIRRFVNVYLNGEDIRFLNGLDTPLQQRDEVSIVPAIAGG 96
                34467999*********************************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 652.15
//
Query:       CCG92450.1  [L=412]
Description: Threonine synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-58  198.9   0.3    1.4e-58  198.7   0.3    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.7   0.3   7.6e-63   1.4e-58       3     294 .]      74     378 ..      72     378 .. 0.97

  Alignments for each domain:
  == domain 1  score: 198.7 bits;  conditional E-value: 7.6e-63
                 GCSSS--EEEECCTCCCCCCE.EEEEEGGGS.TTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHH CS
        PALP   3 lgigpTPlvrlprlskelgvp.lflKlEsln.ptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrl 99 
                 l+ g TPl++++rl+k lg++ l++K++  n p+ SfKdR ++ +l+r+ke    ++v +as+GN + +lAa aa+ G+k+++++pad  p+kv     
  CCG92450.1  74 LHTGMTPLLEAKRLAKILGIKeLYIKNDTVNfPSLSFKDRVVSVALSRAKEL-HYEVVSCASTGNLANSLAAHAAANGFKSYVLIPADLEPAKVIGSLV 171
                 57899**************************99*******************.********************************************** PP

                 TT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTT.TTEEEEEEE-SSSHHHHHHHHHHHH.......HSTT-EEEEE CS
        PALP 100 lGaevvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlg.gkpdavvvpvGgGgliaGiaaglke.......rrpdvrvigv 190
                 ++ +v+ ++g+yd   +++ e+a + + + +v+  + p+  eg +t+g+Eileq+g + pd+ v ++ +G+l++ i ++++e       +     + g+
  CCG92450.1 172 YNTRVIGIKGSYDKVNRLCSEIAGK-YRWAFVNVNFRPYYAEGSKTMGFEILEQMGwKIPDHTVICMASGSLLTKIDKAYQEailcglvEEKPYAIHGA 269
                 *************************.********************************************************999876533339***** PP

                 EECTTCGGTTCCS..S.SS..B...SSS.CCSTCS..CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCTT CS
        PALP 191 epegsdalarslragrrvtvpvs..dtiadglavg..spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelke 284
                 +++g++++++++++g  +  p +  +tia++la+g  +++ +a++ ++r+++++  v+d+e++e+++ la++eg+++e ++++ +  + kl ++g ++ 
  CCG92450.1 270 QASGCNPITAAFKKGTDLIRPIAnpNTIAKSLAIGtpADGYYAIQTIRRTGGYAEDVTDQEIIEGIKILAETEGVFAETAGGVTVGCAkKLIQKGYIPL 368
                 ************9999988887788***********9************************************************************** PP

                 CEEEEEEE-B CS
        PALP 285 gdrvvviltg 294
                 +++vv+ +tg
  CCG92450.1 369 ESQVVLCITG 378
                 *9***99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2949.92
//
Query:       CCG92451.1  [L=155]
Description: Cytosine deaminase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-16   58.7   0.0    5.3e-16   58.4   0.0    1.1  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    1.1e-14   54.3   0.0    1.3e-14   54.1   0.0    1.1  1  MafB19-deam      MafB19-like deaminase
     0.0012   18.9   0.0      0.003   17.7   0.0    1.6  2  SNAD4            Secreted Novel AID/APOBEC-like Deaminase 4
     0.0074   16.2   0.0      0.011   15.6   0.0    1.3  1  APOBEC4_like     APOBEC4-like -AID/APOBEC-deaminase
  ------ inclusion threshold ------
      0.032   14.3   0.0       0.31   11.1   0.0    2.0  2  NAD1             Novel AID APOBEC clade 1
       0.15   12.1   0.0       0.21   11.7   0.0    1.3  1  Bd3614-deam      Bd3614-like deaminase


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   1.8e-19   5.3e-16       6     100 ..      10     104 ..       5     105 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 1.8e-19
                      HHHHHHHHHHHHHHTTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.TSSCETTEEEEEEE--BHHHHHHHHHHT-SEEE CS
  dCMP_cyt_deam_1   6 kllelalkaakeaqkcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaakn.ggsklegatlyvtlePCsmCakaiiqsgikkvv 98 
                       + ++al++ak   ++  +++Ga++v +++++++g n++ + gs + H E+ ++ + ++  ++   ++a+ly+tl+PC mC+ ai   gikkvv
       CCG92451.1  10 PFWKIALEEAKIGFEEGGIPIGACLVYKDRVLGRGRNRRVQLGSVIRHGEMDCLENSGRYpPK-VYHNAILYTTLSPCWMCTGAILLYGIKKVV 102
                      57899999999998*************99*******************************445.4568************************** PP

                      EE CS
  dCMP_cyt_deam_1  99 vg 100
                      +g
       CCG92451.1 103 IG 104
                      98 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   4.5e-18   1.3e-14       7     135 ..      12     140 ..       6     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 4.5e-18
  MafB19-deam   7 frkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvygag.n 103
                   + al+e++++++ ++ +iga  v +++v++rg n++ +  ++  H+E++ l+        k   +a+ly+tl pC mC gai   g+kk+v g + n
   CCG92451.1  12 WKIALEEAKIGFEEGGIPIGACLVYKDRVLGRGRNRRVQLGSVIRHGEMDCLENSG-RYPPKVYHNAILYTTLSPCWMCTGAILLYGIKKVVIGENhN 108
                  567899************************************************95.55556699***************************997625 PP

  MafB19-deam 104 pkslnkLkvkekngrvelveddckeilkgffk 135
                   k+ +++ v++  + ++l +++ck +l +f++
   CCG92451.1 109 FKGPEEVLVQHGVEIIHLDDEECKRLLTSFIE 140
                  5668887777777777777*********9996 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     1e-06     0.003      21      61 ..      55      94 ..      38     101 .. 0.84
   2 ?   -2.2   0.0       1.5   4.4e+03      55      68 ..     130     143 ..     115     146 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1e-06
       SNAD4 21 kehaEllflekikseldpsqeyrvtwylswsPCaeCaekia 61
                 +h E+  le+   ++ p++  + ++y++ sPC+ C+ +i+
  CCG92451.1 55 IRHGEMDCLENS-GRYPPKVYHNAILYTTLSPCWMCTGAIL 94
                34*********9.8899*******************98885 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
       SNAD4  55 eCaekiaeflaehp 68 
                 eC + +++f++++p
  CCG92451.1 130 ECKRLLTSFIESNP 143
                 46666667766666 PP

>> APOBEC4_like  APOBEC4-like -AID/APOBEC-deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.8e-06     0.011      11      76 ..      32      96 ..      22     111 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.8e-06
  APOBEC4_like 11 iyllyeiqwggrgkiyrnrteksklehaevnflekirserkkvsctivwylsispCaecskrllef 76
                  ++l+y  +  grg+  r + + s  +h e+  le+     +kv  + ++y   spC+ c +++l +
    CCG92451.1 32 ACLVYKDRVLGRGRNRRVQLG-SVIRHGEMDCLENSGRYPPKVYHNAILYTTLSPCWMCTGAILLY 96
                  677888788888888877744.5569*********99999**********************9955 PP

>> NAD1  Novel AID APOBEC clade 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.31      59      89 ..      63      93 ..      36     100 .. 0.78
   2 ?    1.2   0.0      0.11   3.4e+02     123     150 ..     116     143 ..     105     153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
        NAD1 59 ikslklldpsqkykvtwylswSPCseCaskl 89
                +++++ + p+   + ++y++ SPC+ C+  +
  CCG92451.1 63 LENSGRYPPKVYHNAILYTTLSPCWMCTGAI 93
                344466688889999************8665 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.11
        NAD1 123 LasagvklsimkyeefeycwetfVenee 150
                 L + gv++  ++ ee++ ++++f+e++ 
  CCG92451.1 116 LVQHGVEIIHLDDEECKRLLTSFIESNP 143
                 7888999999999999999999998763 PP

>> Bd3614-deam  Bd3614-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     7e-05      0.21      76      97 ..      75      96 ..      52     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7e-05
  Bd3614-deam 76 egarllvtlqcCkmCAalvvaa 97
                  +a l+ tl +C mC + ++ +
   CCG92451.1 75 HNAILYTTLSPCWMCTGAILLY 96
                 6899************998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1118.70
//
Query:       CCG92452.1  [L=235]
Description: Uracil-DNA glycosylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-29  103.1   0.0    1.8e-29  102.7   0.0    1.2  1  UDG       Uracil DNA glycosylase superfamily


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0     1e-33   1.8e-29       1     152 [.      50     227 ..      50     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 1e-33
                 HHC-CTT-SEEEEESSTCHH.HHHHSSSS.-.STT--HHHHHHHCCCCCCCHHG........CTEEEEESSS....SECGCTTCCCCTCCHHHHHHHHH CS
         UDG   1 pgegppdakvvivGeaPgae.edatglpFsg.ragnllrkllneaglkrdlese........qgvyitnvvkcrppgnrdtptsaeikacaplleeeie 89 
                 pg+g+ +ak++ivG aP a+ +++tg+ F+g r+g+ l ++l+++g ++ + s         ++vyit +v+c+pp n+  p  +ei +c+p+l ee++
  CCG92452.1  50 PGFGDSSAKLLIVGLAPAAHgGNRTGRIFTGdRSGDFLFDALYRFGYSNSPLSIgkndslvlNKVYITATVRCAPPNNK--PLLEEIINCRPYLIEELN 146
                 79***********************************************77666*********************9988..****************** PP

                 HHH.SSEEEEESHHHHHH...HHHHS.CESCCCSCT................SEEEEES-SSTTTTTTTTSHHHHHHHHHH CS
         UDG  90 llk.prlivllGktaakall.geklg.klrgklleak...............irvlplphPsplnrnffksnpelkaeawe 152
                 +lk  ++i++lG++a++ ++   k++ k +g+l+  k                 +++++hPs +n+ +++ ++++ +++++
  CCG92452.1 147 ILKnIHVILALGRIAFDGIFkTLKIMaKEKGELFPVKkpsfshgieltlpdgKILVASFHPSQQNTFTGRLTKSMFDAVLK 227
                 ***8888***********875336664555666666445555667777889988*************99999988887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1768.46
//
Query:       CCG92453.1  [L=409]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-32  111.3   0.0    6.8e-32  110.4   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    9.5e-27   94.0   0.0    1.8e-26   93.2   0.0    1.5  1  Glyco_trans_1_4  Glycosyl transferases group 1
    2.5e-09   37.4   0.0    5.8e-09   36.2   0.0    1.6  1  Glyco_trans_1_2  Glycosyl transferases group 1
    5.3e-05   23.3   0.1    0.00035   20.6   0.3    2.2  2  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   1.5e-35   6.8e-32      12     170 ..     209     360 ..     202     362 .. 0.92

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 1.5e-35
                      TTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS CS
  Glycos_transf_1  12 nekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEgf 105
                       +kk  +l+vg+++++Kg+  l++a+++lk    +n+ l++ G     + l k + + + +d  ++ g+ s+++++ ++++a++fvlpsi +gf
       CCG92453.1 209 SSKKFKVLCVGQITPRKGQIDLLEAWKRLK---LKNAELILLG---SIDPLMKPILS-QYKDCFTYMGFCSWDKVPYYFQQASVFVLPSIEDGF 295
                      568999***********************7...78********...44556666554.4569999***************************** PP

                      -HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHH CS
  Glycos_transf_1 106 GivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenar 170
                      G v+ EAma+glpvi++ + g+++vv +g +G++++  ++e+lae+++ l +++ lre++++na 
       CCG92453.1 296 GCVISEAMASGLPVITTTNTGASDVVDEGINGYIIPIRSPEKLAEKLEILYKNQSLREEMSKNAL 360
                      ***************************************************************96 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0     4e-30   1.8e-26       2     134 .]     213     348 ..     212     348 .. 0.89

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 4e-30
                      EEEEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---..HHHHHHHTT-T.TEEEE---..THHHHHHHH-SEEEE--..---SHHHHHHH CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllrkkdvrlvivGdgprpeeleelaagleerveftGfv..edlaellaaadvfvaPs..egfglkllEam 91 
                      +++l+vG+++ ++kg+  llea+++l+ k+++l++ G+  +p  ++  ++++++ ++++Gf   ++++ ++++a+vfv+Ps   gfg ++ Eam
       CCG92453.1 213 FKVLCVGQIT-PRKGQIDLLEAWKRLKLKNAELILLGSI-DP-LMKPILSQYKDCFTYMGFCswDKVPYYFQQASVFVLPSieDGFGCVISEAM 303
                      579******5.66**************999*******65.44.333223356699*******9888****************55********** PP

                      HTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  92 aaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                      a+glpv++t+  g+++vv  g ng+++p ++pe+lae+++ L+++
       CCG92453.1 304 ASGLPVITTTNTGASDVVdeGINGYIIPIRSPEKLAEKLEILYKN 348
                      *********99899*****99******************999876 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   1.3e-12   5.8e-09       2      84 ..     286     370 ..     285     378 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.3e-12
  Glyco_trans_1_2   2 vLnpsrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtyd 84 
                      ++ ps  +++ ++++Ea+a+G +++t+  +g  + +++g  + ++   ++e laek++ l +n  +r++++++a e++++ ++++
       CCG92453.1 286 FVLPSIEDGFGCVISEAMASGLPVITTTNTGASDVVDEGINGYIIPirSPEKLAEKLEILYKNQSLREEMSKNALEKARKLLNWE 370
                      5679999********************99**********988888888*****************************99998887 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.3   7.9e-08   0.00035     102     170 .]     127     197 ..      47     197 .. 0.71
   2 ?   -1.5   0.0      0.47   2.1e+03      92     108 ..     303     318 ..     294     363 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 7.9e-08
  Glyco_transf_4 102 tvHglye...krllkarlkplsrllralerrl...lrradrviavSeatadelrerygvppekitVipnGvDler 170
                     + H+l         +  +  l r ++++ +++   + + d ++a+S ++++ +++ +g+p eki ++p GvDl+r
      CCG92453.1 127 HPHTLTSlldE---EHERLILPRQNHWWKKWMldeIEQIDFLLAPSLWVKNSYVA-HGFPTEKIFILPYGVDLKR 197
                     56666643332...2223334444555555557779*******************.****************987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.47
  Glyco_transf_4  92 rrrlgiplVltvHglye 108
                     + ++g+p+++t  + + 
      CCG92453.1 303 M-ASGLPVITTTNTGAS 318
                     3.489999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3267.63
//
Query:       CCG92454.1  [L=492]
Description: putative Lipid A core-O-antigen ligase or related enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-12   46.7   4.1    2.4e-12   46.7   4.1    3.4  4  Wzy_C      O-Antigen ligase
     0.0097   15.6   1.1     0.0097   15.6   1.1    2.6  3  CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like


Domain annotation for each model (and alignments):
>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0  12.1      0.13   1.2e+03      10      62 ..      33      85 ..      24     150 .. 0.75
   2 ?   -0.7   0.0      0.11   9.4e+02      17      43 ..     213     239 ..     207     244 .. 0.81
   3 !   46.7   4.1   2.7e-16   2.4e-12       2     155 .]     268     418 ..     267     418 .. 0.78
   4 ?   -3.1   0.1      0.58   5.2e+03      78      78 ..     441     441 ..     420     481 .. 0.52

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.13
       Wzy_C 10 lflstsRsgiigllvalivlliifykrripfllllg.ilvgvilliilfvlstn 62
                lf++    + + l+ +++++ +i+++++  +l+l++ + +++++l+ilf+l   
  CCG92454.1 33 LFGAVETWAKVFLFCLILFGAFIWWRQKT-KLVLSFsFPLITVVLLILFWLFLE 85
                45555555555566666666666666666.556666688888888898886544 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.11
       Wzy_C  17 sgiigllvalivlliifykrripflll 43 
                 +g++ l+++l+++++++++++ + + l
  CCG92454.1 213 GGLLLLFIPLGIGFLLYKNQLNSSKTL 239
                 688899999999999999998865555 PP

  == domain 3  score: 46.7 bits;  conditional E-value: 2.7e-16
       Wzy_C   2 alllsllalflstsRsgiigllvalivlliifykrri......pfllllg.ilvgvilliilfvlstnletlknitkafgkldkkkgkdksgssRlyiw 93 
                 +ll+++  +++s sR++++++l+a+ +  +++           +++ll+g ++v+ i++++ ++ +  + + ++ +         ++ d  +ssR+++w
  CCG92454.1 268 LLLIISSGILISRSRGAMVSMLLAISLMGLWLSLSSKekkmgrKHALLVGsFIVASITMALWMASDIFIGATQRLVE--------EAVDIKTSSRIALW 358
                 67888999*************77777777666666666889997777777688888888888886666666666654........899*********** PP

       Wzy_C  94 kralplikdspilGtGvfdfpqgdligkyyaydtpnivvdkaHNlyLqilvetGiiGlvlfl 155
                 k+a++l++  p++G G   f++g +             v++a + y+++l + G++G++lfl
  CCG92454.1 359 KEAMELWRMFPLTGSGLGTFEEGFNLV--RTVFPGAMRVTHAESDYVELLTDSGLVGFLLFL 418
                 ****************22222222222..2223467789*********************96 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 0.58
       Wzy_C  78 k 78 
                 k
  CCG92454.1 441 K 441
                 1 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8   4.9       1.8   1.7e+04     148     193 ..      41      83 ..      21      87 .. 0.65
   2 !   15.6   1.1   1.1e-06    0.0097      76     158 ..     240     325 ..     228     350 .. 0.67
   3 ?   -2.8   0.2      0.45   4.1e+03     102     128 ..     416     449 ..     406     476 .. 0.63

  Alignments for each domain:
  == domain 1  score: -4.8 bits;  conditional E-value: 1.8
   CPP1-like 148 tlvgLvvGlllGsllasllqvdvalsglsseellvslvtlvllwlv 193
                 + v+L++ +l+G+++  +++++  l +++s   l ++v l+l+wl+
  CCG92454.1  41 AKVFLFCLILFGAFI--WWRQKTKLVLSFSFP-LITVVLLILFWLF 83 
                 455555555555555..333444444445665.7777888888875 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.1e-06
   CPP1-like  76 kspawvkklqesldtPsse....dlliraavflvlavltlvapaesvpalllalglgasiyflnrKekklgravlltlvgLvvGlll 158
                 k+p+   ++ +sl+  s +    +l  + ++ ++ +++++  +  +++++lla++l+   ++l  Kekk+gr  +l +++++v+ + 
  CCG92454.1 240 KLPKK-DSMVKSLQYLSIKdlfeKLFFPFLLLIISSGILISRSRGAMVSMLLAISLMGLWLSLSSKEKKMGRKHALLVGSFIVASIT 325
                 34433.3444444444444000045555555555555666666666**************************999999999887764 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.45
   CPP1-like 102 vflvlavltlvapaes.......vpalllalglg 128
                 +fl+l++++l+ + ++        +++lla g +
  CCG92454.1 416 LFLGLILIVLYKGWKNiifekdqKTKFLLAGGYF 449
                 4455555555444444444444455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3497.63
//
Query:       CCG92455.1  [L=393]
Description: putative Rhs family protein fused to TPR repeats [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0032   18.0   0.2       0.51   10.9   0.1    2.5  2  TPR_19    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.044   13.5   0.1        3.3    7.4   0.0    2.2  2  HAUS2     HAUS augmin-like complex subunit 2


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   5.7e-05      0.51       9      59 ..     109     167 ..     108     171 .. 0.85
   2 !    5.3   0.0    0.0033        29      26      46 ..     168     188 ..     165     191 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.7e-05
      TPR_19   9 eAlalleqalqe.......dpknaearllLAeallalgqldeAealLdalpeedpd.da 59 
                  A+ ll++++ +       d ++++++  + e+ l+ g l+eA+++ d++ + ++d ++
  CCG92455.1 109 TAIYLLKSIYGDnarklliDKNDLYIQSSYLEIALKEGWLEEAKEIWDRISKNKKDiEP 167
                 5889999998776666666888******************************9999445 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0033
      TPR_19  26 earllLAeallalgqldeAea 46 
                 ++  +++e  ++ g+++eA++
  CCG92455.1 168 RLFRNYVETFIQKGNYQEARR 188
                 6778899************97 PP

>> HAUS2  HAUS augmin-like complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00037       3.3      30      77 ..      46      95 ..      26     117 .. 0.81
   2 ?    3.9   0.0    0.0042        38      85     116 ..     147     178 ..     132     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00037
       HAUS2 30 akkka..ekndalisvLrelsavqrelaklnlElqlrkddkdvadlthvs 77
                 k+k   +k ++ +++L+ ++++   +  + lE+  +  + d +dl+ ++
  CCG92455.1 46 VKEKInqDKKEDAFQILQWVMKISGPISSKRLEIAELLIECDKTDLIIPE 95
                4444335788899***************************9999999765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0042
       HAUS2  85 alqrvtthLkavikeKdriiaRLqqPysldnl 116
                  l++  ++ + ++k+K++i  RL + y+   +
  CCG92455.1 147 WLEEAKEIWDRISKNKKDIEPRLFRNYVETFI 178
                 57778888899**************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1129  (0.0629706); expected 358.6 (0.02)
Passed bias filter:                      704  (0.039266); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 2620.28
//
Query:       CCG92456.1  [L=773]
Description: Capsular polysaccharide synthesis enzyme cpsD fused to Mrp family ATPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-13   50.5   2.4    6.8e-13   48.4   0.0    3.1  4  GNVR          G-rich domain on putative tyrosine kinase
    2.4e-08   33.7   0.0      1e-07   31.7   0.0    1.9  2  ParA          NUBPL iron-transfer P-loop NTPase
    7.1e-08   32.6   0.0    3.7e-06   27.0   0.0    2.7  2  CbiA          CobQ/CobB/MinD/ParA nucleotide binding domain
    3.5e-06   27.2   0.2    1.1e-05   25.7   0.2    1.8  1  Wzz           Chain length determinant protein
    4.1e-05   23.6   0.0    0.00011   22.2   0.0    1.7  1  AAA_31        AAA domain
     0.0019   18.1   0.8        1.8    8.3   0.0    3.2  3  AAA_26        AAA domain
  ------ inclusion threshold ------
      0.074   11.6   7.6      0.063   11.9   5.0    1.9  2  FapA          Flagellar Assembly Protein A
        0.1   12.2   7.6       0.14   11.8   0.9    2.3  2  CENP-F_N      Cenp-F N-terminal domain
        2.6    8.1  21.1      0.023   14.7   9.7    2.7  3  TPR_MLP1_2    TPR/MLP1/MLP2-like protein
        6.9    6.7   9.2        2.6    8.1   5.8    2.0  2  P4Ha_N        Prolyl 4-Hydroxylase alpha-subunit, N-terminal 


Domain annotation for each model (and alignments):
>> GNVR  G-rich domain on putative tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       3.1   5.5e+03      59      80 ..      52      73 ..      49      74 .. 0.81
   2 ?   -2.3   0.0       2.5   4.4e+03       8      31 ..     365     387 ..     359     395 .. 0.70
   3 !   48.4   0.0   3.8e-16   6.8e-13       4      78 ..     400     473 ..     397     476 .. 0.95
   4 ?   -0.2   0.0      0.53   9.4e+02      48      71 ..     557     580 ..     555     587 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.1
        GNVR 59 alivvlalllGlllgvalvllr 80
                + +vv+++ll ll+ +++++ +
  CCG92456.1 52 KAVVVISFLLILLFTILFTFTQ 73
                5689999999999999998865 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.5
        GNVR   8 rLtrDvevnteiYtqLlnkaqele 31 
                 +L+ D+e+++  Y +L ++ +e +
  CCG92456.1 365 KLEADYEAAKRHYESLEEEWKE-A 387
                 7999**********99444333.3 PP

  == domain 3  score: 48.4 bits;  conditional E-value: 3.8e-16
        GNVR   4 qeilrLtrDvevnteiYtqLlnkaqelevakagtvgnVrivDeavvpekpvkPkkalivvlalllGlllgvalvl 78 
                 q +l L+r++++++e+Yt Ll++ +e ++++a + gn++++ +  +p+ pvkP+k   ++ al++G l +++l+l
  CCG92456.1 400 QYAL-LKREADTDREMYTGLLKRLKETDITSALNSGNIEVIETSPIPKVPVKPQKIRNILFALVFGSLTSCGLAL 473
                 5566.9******************************************************************997 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.53
        GNVR  48 vvpekpvkPkkalivvlalllGll 71 
                 ++ + p+  k + iv la++lG  
  CCG92456.1 557 ITSTYPSEGKSSTIVNLATVLGQQ 580
                 566778899999999999999965 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         1   1.8e+03     194     210 ..     485     501 ..     482     540 .. 0.72
   2 !   31.7   0.0   5.6e-11     1e-07       5     197 ..     554     751 ..     551     766 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1
        ParA 194 geklaeelgvpllgeip 210
                  e++ ++lg+p+lg+ip
  CCG92456.1 485 KEEIEKQLGIPVLGSIP 501
                 5788999*********9 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 5.6e-11
        ParA   5 viavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeekpeqs...ekkliPvea.kgikvmSigfllesedeavvwr.Gpmksk 98 
                  ia++S+    GKS++ vnlA+ L ++g+ v ++D D+  ps+ + lg++ + p  s   + + + +e   +++++     ++   +a +     + s+
  CCG92456.1 554 LIAITSTYPSEGKSSTIVNLATVLGQQGT-VLIIDGDLRKPSLHKSLGLRPR-PGLSeilT-GQVNIEEaLQLSTIPNVWAIS-GGRAAIHPtDLLGSE 648
                 68888888889*************99995.89******************95.55541322.222222224444444444455.444444440444456 PP

        ParA  99 aikqllkdvewgelDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcp......kcgekteifgk 191
                  ++ l++ v+ +   y++iD+PP  g    +++ ++ ++g + V    ++  +d  ++++++ +v++++lGvv N ++   +        +ek ei +k
  CCG92456.1 649 SMHSLIQLVR-QYFCYILIDTPPMHGMPDAAIIGSV-TDGLIYVIQAGRIERKDFLQNLQILATVNARILGVVLNKTTTSYQsyysyyAYKEKNEIQNK 745
                 6666666655.5688********9999999999999.59************************************866555411111133444444444 PP

        ParA 192 gggekl 197
                 +++++l
  CCG92456.1 746 NQTQSL 751
                 444444 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.093   1.7e+02      94     115 ..     485     503 ..     472     509 .. 0.74
   2 !   27.0   0.0   2.1e-09   3.7e-06       1      92 [.     555     729 ..     555     745 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.093
                 HHHHHHHHHHCTS-EEEEEE-- CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  94 kealeelkqrygvpvlgviprd 115
                 ke +e+++   g+pvlg+ip  
  CCG92456.1 485 KEEIEKQL---GIPVLGSIPDI 503
                 45555555...********975 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 2.1e-09
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 iai+st   +GK+++ +nLa+ l + +  Vl +D D   ++l+   gl+++                                                
  CCG92456.1 555 IAITSTYPSEGKSSTIVNLATVLGQ-QGTVLIIDGDLRKPSLHKSLGLRPRPGLseiltgqvnieealqlstipnvwaisggraaihptdllgsesmhs 652
                 799**********************.889**************65555554444888889999999********************************* PP

                 .........................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TT CS
                 .........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .........................................dlkrllellealgkkkalllkiagvvlnrvdgeneetl 92 
                                                          +++  + +l++l++   ++ +i+gvvln+   +  +++
  CCG92456.1 653 liqlvrqyfcyilidtppmhgmpdaaiigsvtdgliyviqaGRIERKDFLQNLQILATVNARILGVVLNKTTTS--YQS 729
                 *****************************************66666899999999888889*********8776..444 PP

>> Wzz  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.2   5.9e-09   1.1e-05       6      91 ..      42     131 ..      41     132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 5.9e-09
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EEEEEEEES--CHHHHH.HHHHCCHHHHHH....HHHHHHHHHHHSSSS--EEEEE CS
         Wzz   6 ieLlsvLwkrkklIilvtllfallaviyaflatpkYtataqilvpekkqvea.ssltaqdvqanl....qlasteieilkSrdvlekvise 91 
                 +e ++++ + k ++++  ll +l+ ++++f+++p+Y   a+i ++ +k+ e  +  t+++ qa+l    + ++t+ eilkSr++ ++v++ 
  CCG92456.1  42 KERFNEIYRYKAVVVISFLLILLFTILFTFTQKPVYRGVATIKINFNKS-EVlPYKTVGEDQAGLfdfeNFFKTQVEILKSRSLAQRVVER 131
                 5668899999*************************************99.54455555555555566669****************99875 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     6e-08   0.00011      11     152 ..     562     696 ..     553     719 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 6e-08
      AAA_31  11 GGvGKTTtsvnlaaalaklgkkvLlvDlDpQa.nattglgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielvelekk.eeil 107
                    GK+ t vnla +l ++g  vL++D D  + ++  +lg++       l e+l+ ++ni+ea++ +++ n+  i      ++    +  ++    e +
  CCG92456.1 562 PSEGKSSTIVNLATVLGQQGT-VLIIDGDLRKpSLHKSLGLRP---RPGLSEILTGQVNIEEALQLSTIPNVWAI------SGGRAAIHPTDLLgSESM 650
                 5569**************996.*******88724555677644...45899**99**********5555555444......444444433333224456 PP

      AAA_31 108 kellekvkdeYDyiiiDcpPsLglltenaL.vasdsviipvqaeay 152
                 ++l++ v++ + yi+iD+pP  g+    ++  + d +i ++qa   
  CCG92456.1 651 HSLIQLVRQYFCYILIDTPPMHGMPDAAIIgSVTDGLIYVIQAGRI 696
                 7889****************99987766663356667767776655 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0084        15     172     194 ..     484     506 ..     452     509 .. 0.84
   2 ?    0.5   0.3      0.26   4.7e+02       3      29 ..     555     581 ..     553     584 .. 0.86
   3 !    8.3   0.0     0.001       1.8     126     170 ..     682     726 ..     666     757 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0084
      AAA_26 172 nvetlekksgipvlGvvPylpdl 194
                   e++ek+ gipvlG++P ++ +
  CCG92456.1 484 SKEEIEKQLGIPVLGSIPDIELI 506
                 5689**************98765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.26
      AAA_26   3 ifvtgtdtgvGKTvvslgLvralkrkg 29 
                 i +t+t ++ GK++++  L+  l ++g
  CCG92456.1 555 IAITSTYPSEGKSSTIVNLATVLGQQG 581
                 789****************99886665 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.001
      AAA_26 126 nlgapvilVargglgtinqllltiealrqknvrvlGvilNkvrnp 170
                 +     i V+++g+   ++ l ++++l + n r+lGv+lNk++  
  CCG92456.1 682 SVTDGLIYVIQAGRIERKDFLQNLQILATVNARILGVVLNKTTTS 726
                 55555677888888888899999******************8655 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.27   4.8e+02     315     381 ..     210     272 ..     171     304 .. 0.64
   2 ?   11.9   5.0   3.5e-05     0.063     307     411 ..     295     394 ..     291     417 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.27
        FapA 315 klGselgtkteievgldepelkeklkeleeeleeleeeleklkkk..ikklpklkaekqlesekkeqlk 381
                  ++  l+ k+e ++  + + l ++l+ ++++l   ee+l + +++  i k+p    +++     +++l+
  CCG92456.1 210 FIAFGLDRKLEANQHAR-HFLAQQLDSMRKKLALAEEKLATFTEQtgIVKFPGVDRSPA-----EQELN 272
                 44455666666666666.67777788888888888888888888777555554333222.....22333 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.5e-05
        FapA 307 alkevkakklGselgtkteiev.gldepelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkel 404
                 a+  ++a+kl++  ++ +++ +  +  ++ ++k++ele+ ++e   ++ +l+ +i+ l+k     ++++ek+ +++kl+ ++e+ k+ +e+leee ke 
  CCG92456.1 295 AKAAMDAGKLAAIPDSPFTVDLkKIL-LKEQAKYRELEDIYKEEYPKMSRLRTEIEGLNK-----EISEEKEATIEKLEADYEAAKRHYESLEEEWKEA 387
                 56667778888888888888887777.9999999**************************.....67889*************************9988 PP

        FapA 405 keelesk 411
                   ++++ 
  CCG92456.1 388 MVKVKKE 394
                 7777765 PP

>> CENP-F_N  Cenp-F N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.9   7.9e-05      0.14     103     189 ..     270     352 ..     262     358 .. 0.73
   2 ?    3.1   1.2     0.034        62      93     128 ..     359     394 ..     354     416 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.9e-05
    CENP-F_N 103 qLssskkqiekLeqelkrykselersqqallssdvslsplstPqksfatpltpsqkksdskleelqekynkeveerkrleaelkvlq 189
                  L+     + k   e+ r ++ le+ ++a+ ++++     + P++ f++ l+++  k+++k+ el++ y++e  +  rl +e+  l+
  CCG92456.1 270 ELNRVSEAVSKARFEMIRREVYLEKAKAAMDAGKL----AAIPDSPFTVDLKKILLKEQAKYRELEDIYKEEYPKMSRLRTEIEGLN 352
                 33333344444444555555556666555555553....367****************************************98876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.034
    CENP-F_N  93 kesqvnflegqLssskkqiekLeqelkrykselers 128
                 ke  +  le+  +++k++ e Le e k   +++ ++
  CCG92456.1 359 KEATIEKLEADYEAAKRHYESLEEEWKEAMVKVKKE 394
                 677777777777788888888888877765555544 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.4      0.27   4.8e+02      55      78 ..     229     252 ..     195     258 .. 0.69
   2 ?   -2.4   0.2       2.5   4.6e+03      57      85 ..     269     297 ..     264     303 .. 0.43
   3 ?   14.7   9.7   1.3e-05     0.023      29     105 ..     318     395 ..     314     402 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.27
  TPR_MLP1_2  55 dvkelqalreelnelkaeiaelka 78 
                  +++l ++r++l+ +++++a++++
  CCG92456.1 229 LAQQLDSMRKKLALAEEKLATFTE 252
                 356666666666666666666555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.5
  TPR_MLP1_2  57 kelqalreelnelkaeiaelkaeaesaka 85 
                 +el+++ e +++++ e+   +  +e+aka
  CCG92456.1 269 QELNRVSEAVSKARFEMIRREVYLEKAKA 297
                 33444444444444444333333333333 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.3e-05
  TPR_MLP1_2  29 edlekqaeiakeaqqkYerelvkhaedvkelqalreel.nelkaeiaelkaeaesakaeleeseesweeqkeelekel 105
                 + l k+++ ++e ++ Y++e  k +   +e++ l++e+ +e +a+i++l+a+ e+ak   e  ee+w+e   + +ke 
  CCG92456.1 318 KILLKEQAKYRELEDIYKEEYPKMSRLRTEIEGLNKEIsEEKEATIEKLEADYEAAKRHYESLEEEWKEAMVKVKKEG 395
                 5567888999***************************94556689************************999999885 PP

>> P4Ha_N  Prolyl 4-Hydroxylase alpha-subunit, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       2.7   4.9e+03      18      49 ..     214     245 ..     205     255 .. 0.64
   2 ?    8.1   5.8    0.0014       2.6       3      86 ..     314     395 ..     313     433 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.7
      P4Ha_N  18 eLesyieeeekkleklkrfleeleeehesake 49 
                  L++ +e++++  + l + l++++++   a+e
  CCG92456.1 214 GLDRKLEANQHARHFLAQQLDSMRKKLALAEE 245
                 56677777777777777777777777644333 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0014
      P4Ha_N   3 adlekLlklErelveeLesyieeeekkleklkrfleeleeehesakedkeeylsnPlnaFklikRltsdW.eeleklleesesee 86 
                 +dl+k+l  E+   +eLe+  +ee  k+++l+  +e l++e ++   +ke  +++    +   kR ++   ee+++ + + ++e+
  CCG92456.1 314 VDLKKILLKEQAKYRELEDIYKEEYPKMSRLRTEIEGLNKEISE---EKEATIEKLEADYEAAKRHYESLeEEWKEAMVKVKKEG 395
                 78999************************************955...778899999999******99999999988886655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1470  (0.0819901); expected 358.6 (0.02)
Passed bias filter:                      734  (0.0409393); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.49
# Mc/sec: 4732.51
//
Query:       CCG92457.1  [L=378]
Description: Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-19   70.1   0.4    1.4e-18   66.8   0.1    2.4  2  Poly_export  Polysaccharide biosynthesis/export protein
      3e-17   62.2   1.0    1.5e-07   31.1   0.1    2.5  2  SLBB         SLBB domain


Domain annotation for each model (and alignments):
>> Poly_export  Polysaccharide biosynthesis/export protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.1   1.6e-22   1.4e-18       7      81 ..      69     140 ..      63     141 .. 0.92
   2 ?    0.5   0.0      0.08   7.2e+02       6      17 ..     257     268 ..     249     295 .. 0.74

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 1.6e-22
  Poly_export   7 yrigpgDvLsItvwehpelsssqalqgylVdpdGtIslPllGkikvaGltveelreeieekl.skylkdpqvtVrv 81 
                    +g gD ++I+v++ pels      + ++ p+G+I lPllG+++v+Glt eel +++++kl +kylk+pqv+V+v
   CCG92457.1  69 VPLGDGDLIEIRVSDLPELSD----VKTRITPSGKILLPLLGQLQVEGLTAEELHDLLKTKLgEKYLKNPQVSVSV 140
                  5699****************3....679**********************************777*********98 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.08
  Poly_export   6 eyrigpgDvLsI 17 
                  +  + pgDv+++
   CCG92457.1 257 NVLLYPGDVIQV 268
                  555666666665 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.1   1.7e-11   1.5e-07       1      46 [.     147     191 ..     147     197 .. 0.92
   2 !   29.3   0.1   6.2e-11   5.6e-07       2      53 ..     274     324 ..     273     327 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1.7e-11
                 EEEEESSBSS-EEEEEETT-BHHHHHHTTT-SBSS.........-E CS
        SLBB   1 vVtVtGeVkrPgnyevpigttlsdlieqaGGltddadlksvnLarl 46 
                 +V V G+V +Pg+y ++  ++l d++ +aGGl +da+ + + L+r 
  CCG92457.1 147 KVSVMGAVFKPGVYDMTNQLRLVDALGLAGGLREDAS-TTIYLIRS 191
                 599*********************************9.89999985 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 6.2e-11
                 EEEESSBSS-EEEEEET.T-BHHHHHHTTT-SBSS.........-E.EEE-SSS CS
        SLBB   2 VtVtGeVkrPgnyevpi.gttlsdlieqaGGltddadlksvnLarl.avipgGp 53 
                 ++V GeVk+P+ ++++   +t  ++i +aGG++d+ad+++v+++r+     +G+
  CCG92457.1 274 IYVGGEVKNPKGVPIKGtILTAYQAIIEAGGPNDKADMSKVKIYRKmP---NGQ 324
                 79**************987888899999*****************977...775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2749.03
//
Query:       CCG92458.1  [L=348]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.11   12.3   0.7       0.19   11.5   0.7    1.3  1  Tir_receptor_N  Translocated intimin receptor (Tir) N-terminu


Domain annotation for each model (and alignments):
>> Tir_receptor_N  Translocated intimin receptor (Tir) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.7   1.1e-05      0.19     232     265 ..     311     344 ..     305     345 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.1e-05
  Tir_receptor_N 232 lslgtiaagliglaatgiaqalaltpepddpttt 265
                     + lgt+aag++g++a+g++ a +  p p  p+ t
      CCG92458.1 311 IILGTLAAGVVGFTAAGVSGAFTSHPGPPVPVVT 344
                     569*************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2643.57
//
Query:       CCG92459.1  [L=471]
Description: Sugar transferase, WcaJ family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-68  229.4   0.0    3.6e-68  228.8   0.0    1.3  1  Bac_transf     Bacterial sugar transferase
    2.9e-08   33.9   0.0    5.3e-08   33.1   0.0    1.4  1  CoA_binding_3  CoA-binding domain


Domain annotation for each model (and alignments):
>> Bac_transf  Bacterial sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.8   0.0     4e-72   3.6e-68       1     183 [.     276     466 ..     276     467 .. 0.95

  Alignments for each domain:
  == domain 1  score: 228.8 bits;  conditional E-value: 4e-72
  Bac_transf   1 KrlfDivlsllalillsplllvialliklessggpvffkqkRvGkngkpFkiyKFRsmvkdaekkl..........gavvklkndpritkvGrflRkts 89 
                 Kr++Di++s+++l++lsp++l+ia++ikl+ +ggp+f+ ++RvG++g+ F+++KFR+m++da+kk+          g ++k++ndpr+t++GrflRk+s
  CCG92459.1 276 KRIIDILASFVGLLFLSPVFLLIAAIIKLQ-DGGPIFYCSTRVGRKGRRFSCIKFRTMTVDADKKKealahlnervGPMFKITNDPRVTPFGRFLRKYS 373
                 9***************************99.789******************************99********************************* PP

  Bac_transf  90 lDELPqlinVLkGdMslVGpRPelpeeveeeieeyeee.eerlkvkPGltGlaqvnsgrselsleeklelDleYvenlslllDlkillktvkavl 183
                 lDELPql+nVL G+MslVGpRP +p+eve+ + +y+ +  +rl+vkPGlt+l+ v ++r++  +e+ +elD++Y+e+++ +lD+ki+l+t+++v+
  CCG92459.1 374 LDELPQLFNVLLGQMSLVGPRPPTPDEVEN-YGKYSLSyYKRLEVKPGLTSLWAV-EARNDPRFERAVELDCKYIEEWTPWLDIKIILRTIPVVF 466
                 **************************6554.44665664699*************.77777********************************98 PP

>> CoA_binding_3  CoA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   5.9e-12   5.3e-08       4     115 ..      78     192 ..      75     218 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 5.9e-12
  CoA_binding_3   4 GvYqswrgrsllrlllrvlsawllvllllallsfslkdafSR.lwlaywavvglvllivsrllvravlrrlrrngrne...rrvvavgggeelakq 95 
                    G+Y+ +   s + ++++++ a + + ++l++++f+ +  +SR l+l+ w ++ l+l   +r+++r++  +  ++g      ++++ ++++++l++ 
     CCG92459.1  78 GIYDPSKVLSISEETKKIFWALTQSAAFLIVILFAGQILISRkLLLGLWLFSILALPG-WRFILRKIYSGDLKEGNSWikvVIIGKGENSKKLERF 172
                    9999999***********************************9999999887776666.99*****999988877666233555577888889999 PP

  CoA_binding_3  96 iranpelgfrvvgvfddrdd 115
                     +anp lg++v gv ++++d
     CCG92459.1 173 FQANPFLGISVWGVLEEKED 192
                    9**************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3483.43
//
Query:       CCG92460.1  [L=71]
Description: hypothetical protein MFUM_700009 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       148  (0.00825478); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 532.54
//
Query:       CCG92461.1  [L=56]
Description: hypothetical protein MFUM_700010 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 477.26
//
Query:       CCG92462.1  [L=423]
Description: hypothetical protein MFUM_700011 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-08   33.4   0.2    9.9e-07   29.0   0.1    2.7  2  RAMPs     RAMP superfamily


Domain annotation for each model (and alignments):
>> RAMPs  RAMP superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   5.5e-11   9.9e-07       2     213 .]       8     189 ..       7     189 .. 0.63
   2 ?   -2.2   0.0      0.19   3.4e+03     142     163 ..     256     272 ..     244     325 .. 0.67

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 5.5e-11
                 EEESS-EE----..............---....S----HHHHHHHHHHHHHHHHH.HHHTT-HHHHH.H.........HHHHHH--S...SS--SEEEE CS
       RAMPs   2 letltPlhiGdgkisdekeespefrdkgg....lPyIPGSSlkGalRsalekllgsekkekkdeysrkkekqrvkkgdleeaiFGneeeskiagrvffe 96 
                 + +ltP +iG++   +++e+   ++ +++       +++ Sl+G+lR++++ l     +  +++ + +k          ee iFG++ ++  ag+ +f+
  CCG92462.1   8 FRFLTPAFIGGA---NPQEDASGRKAPTQdlnvHAELRPPSLRGSLRFWFRLLK----GFSCSHMDVRK---------QEEYIFGSA-SQNGAGASRFI 89 
                 5689********...66666655555555111157899************9553....45555555555.........9********.66666666666 PP

                 E.......................EEEEEEEEEEEEEEEEE--SSS-EEEEEE...-TT-EEEEEEEESS.....................HHHHHHHH CS
       RAMPs  97 Darpvkipgqileeskqikstpspklsgselrelldhsterrtrvaidrktktngkkkgglftleaipae.......rikfsgrirlenlsdeelgall 188
                  + +++ + + ++   + + +p++                       ++    ++++  +lf l+    +        +k +++i ++ +  +  + ++
  CCG92462.1  90 LR-ILPHEKSAVDMHGWTLNKPLQ----------------------QEDLESLSNEYPYALFPLRNSSRAwfppletAWKAQVLIHEDTKIPQLVEGIE 165
                 54.445555555555555554442......................22222222221112222222222233333333333777777************ PP

                 HHHHHH.HHH---STTTTBTTT-EE CS
       RAMPs 189 klLdlldlhflglGggkplGfGsve 213
                 +l+  + +hf+ lG ++++GfG+v+
  CCG92462.1 166 ALFTVW-GHFGSLGFRSRRGFGAVS 189
                 ******.***************985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.19
                 S-EEEEEE....-TT-EEEEEEE CS
       RAMPs 142 aidrktktngk.kkgglftleai 163
                 ++d+kt++ +k +       e i
  CCG92462.1 256 YWDKKTNQWKKvP------FEKI 272
                 6777777777631......2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3194.88
//
Query:       CCG92463.1  [L=628]
Description: putative Adenosine deaminase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-31  110.1   0.0    1.1e-30  107.1   0.0    2.3  1  A_deaminase   Adenosine/AMP deaminase
    1.9e-11   44.0   0.1    5.7e-11   42.5   0.0    1.9  2  Cas_NE0113    CRISPR-associated protein NE0113 (Cas_NE0113)
  ------ inclusion threshold ------
      0.022   13.6   0.2      0.055   12.3   0.2    1.6  1  Cas_Cas02710  CRISPR-associated protein (Cas_Cas02710)
      0.055   12.8   0.0       0.21   10.8   0.0    1.9  2  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.0   2.6e-34   1.1e-30       2     327 ..     260     609 ..     259     610 .. 0.80

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 2.6e-34
                  S-EEEEEEECCCSS-HHHHHHHHHHHCHT....SS-SCCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHTCCCCCCHHHHHHCCCCCHCTTCCCCCCCC CS
  A_deaminase   2 lpKvdlHvHldgclnpktllrlakkkgik..eldekvveedeklltlqekfesLkeflydlsvdvlvlhwlievvrllavekakdlakdfvkylevif 97 
                  lpKv+lH Hl g +    ll   ++++ +  +l+    + + +   + +k+  L+ +++   ++  +l   +  ++       + l kd v+y+e++ 
   CCG92463.1 260 LPKVELHCHLGGFATHGELLAQVRSSAEApsSLPHLLEPPLPEGWPRPAKPIGLETYMELGRATGTDLLKDPGCLKEQCRLLYQALQKDRVVYAEIRT 357
                  7999999999999999999999988876511233333344445556678888888888887776666654777777777777889999********** PP

                  SHHHHHHH-GCSTCCHHHHCCCCCCCCCCHCCT.....-EEEEEECCETT..........TCCGHCCCHHHHHHCCCC.CCCCCCCCC-TTSTTGGG. CS
  A_deaminase  98 sPlfeatagpqlpelevvlkvvdgfdsvedesk.....vkerlilvksrk..........peewseeinelasyyrdy.tvvnldllndekiepasl. 178
                  sP  ++++    +  +v+ ++ d f++  +e        ++ li++  rk          + + + + ++ +     y +vv++dl++ e +++    
   CCG92463.1 358 SPNNYTNISKGRSAWTVLCEIRDHFQQCMNENQgadtyCHVNLIIIVTRKdkgdlsdisrHLSLAVTAAQHFPPKESYcGVVGVDLAGLESPKTRASy 455
                  ******98855899999999988888877665411111234555555555667655554444444444444443333359********8877665546 PP

                  HHHHHCCCCHTT-EEEEEESSSS-CHHHHHHHHCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-....CHHHHHHTT-EE CS
  A_deaminase 179 flklraeagkstllltpHaGEagglehvveAllllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafleyaen....Plkeflerglnv 272
                  f + +      +l +t+HaGE  ++e +++A+  l+a rigH ++l k+++L++   ++ i++e+cPl N++++ f+++++n    Plke+l+rg+ v
   CCG92463.1 456 FAEDFVPVHRCGLAVTAHAGEIDDVEGIWQAIFRLHARRIGHALHLLKSQDLLNTVIDRHIGIEMCPLANYQIHGFKPMENNkntyPLKEYLNRGVYV 553
                  999999999********************************************************************998766677************ PP

                  EE--BSCCCCT-SHHHHHHHHHHHH.T--HHHHHHHHHHHHHCSSS-HHHHHHHCH CS
  A_deaminase 273 slntDDPlqfgttLieeYaiaaqvf.klseedlaelarNsvkqsflsadekkklld 327
                  ++ntD+  +++ +L ++   +a+   +  + d+ +l   + + +fl+++ + +l+ 
   CCG92463.1 554 TVNTDNIGISKGSLTDNLLFLAELCpGIRRLDILKLLNHACQIAFLPHQLRTELIH 609
                  ************************99**************************9986 PP

>> Cas_NE0113  CRISPR-associated protein NE0113 (Cas_NE0113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   1.3e-14   5.7e-11       7     153 ..      27     160 ..      24     214 .. 0.86
   2 ?   -3.5   0.0       1.5   6.8e+03      28      72 ..     364     415 ..     362     419 .. 0.51

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 1.3e-14
  Cas_NE0113   7 etldaLlqegepvdevvvittkdgkvrealelLleeflkdygakikldesaihviedvsgeelaDirteedneallqlivrlvrelrenegerlhlsia 105
                 e+l+ +++  + +dev+++tt +++  e  + +      +   ki++          ++  e+aDi+++ed   + ++++r   +  +    +++++ia
  CCG92463.1  27 EALYFVNHYHQKLDEVHLLTTCNPEAEECFQNI------EQCLKIHFPGLI---YTFTQVDECADICSQEDYFLFQEVLYRWFLKHIQR--ATVYVCIA 114
                 89999****************************......333366665444...467999*********************99888888..79****** PP

  Cas_NE0113 106 GGRKtmsillalaaqLygreqDrlyHvlveeefesnreflyppkesai 153
                  GRKtms+ l   a+L+g  + +++ vl ee f s+ e +++  ++ +
  CCG92463.1 115 SGRKTMSAALLKGASLFG--AKYVFDVLAEEPFPSSMEEVKEALKTNK 160
                 ******************..************9997776665555444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.5
  Cas_NE0113  28 kdgkvrealelL......leeflkdyga.kikldesaihviedvsgeelaDi 72 
                 +  k r+a+++L       ++ +++ +    + + + i ++   +++ l Di
  CCG92463.1 364 NISKGRSAWTVLceirdhFQQCMNENQGaDTYCHVNLIIIVTRKDKGDLSDI 415
                 5566677777776665542233333333244444444444666666777776 PP

>> Cas_Cas02710  CRISPR-associated protein (Cas_Cas02710)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   1.2e-05     0.055      55      98 ..      89     136 ..      30     143 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.2e-05
                   HHHHHHHHHHS.....TTS-EEEE-SSS-HHHHHHHHHHHHHHTEEEE CS
  Cas_Cas02710  55 ykkikevleka....leeeevivDlTgGtkeMtaglalagillrvkls 98 
                   y  ++evl ++    +++  v+v + +G k+M+a+l + ++l+++k +
    CCG92463.1  89 YFLFQEVLYRWflkhIQRATVYVCIASGRKTMSAALLKGASLFGAKYV 136
                   5567788888888778999*******************9999988765 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.27   1.2e+03      62     113 ..     116     158 ..      92     175 .. 0.68
   2 ?   10.8   0.0   4.7e-05      0.21     193     257 ..     496     567 ..     447     604 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.27
                   HHHHHHHHHHTSSSEEEEEEESSEGGSGCCCSHHHHHHHHHHHHHHHHHHCT CS
  Amidohydro_1  62 giealleaaeelplglrilggkvsldrgsaetskasreklkagaaetikgka 113
                   g + +  a+ +   g  ++g+k+++d   +e+++ s+e++k+      k   
    CCG92463.1 116 GRKTMSAALLK---GASLFGAKYVFDVLAEEPFPSSMEEVKEAL----K--T 158
                   44555555555...777889999999988899999999997775....2..2 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 4.7e-05
                   HCTCEEEHH..HHHHHHHHHHHHCEEHHHHHHHH........SEHHHHHHHHHHHHTSCEEEEEECT.....TSSCCGGH CS
  Amidohydro_1 193 ahgvhltpt..eaellkerlkeagvahcpfsnsi........lrsgrealrkaldeGvkvglgtDga.....asgnslnl 257
                    h  hl  +   +++++ r   +g+ +cp +n           ++++ +l++ l++Gv v++ tD+      +      l
    CCG92463.1 496 GHALHLLKSqdLLNTVIDR--HIGIEMCPLANYQihgfkpmeNNKNTYPLKEYLNRGVYVTVNTDNIgiskgS------L 567
                   4555665444577777777..79999******999******************************66643331......2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.39
# Mc/sec: 4839.48
//
Query:       CCG92464.1  [L=69]
Description: hypothetical protein MFUM_700013 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 522.94
//
Query:       CCG92465.1  [L=998]
Description: hypothetical protein MFUM_700014 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-33  114.3   0.1    4.9e-32  110.4   0.0    2.9  3  DUF3692   CRISPR-associated protein
  ------ inclusion threshold ------
      0.023   15.2   0.1      0.098   13.1   0.1    2.2  1  DUF3293   Protein of unknown function (DUF3293)
      0.051   13.9   0.0       0.57   10.5   0.0    2.8  3  mCpol     minimal CRISPR polymerase domain
      0.071   13.6   0.2         30    5.1   0.0    3.9  4  VWA_N     VWA N-terminal
       0.14   12.3   0.0        0.5   10.5   0.0    1.9  1  Vwaint    VWA / Hh  protein intein-like


Domain annotation for each model (and alignments):
>> DUF3692  CRISPR-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   1.4e-35   4.9e-32       2     110 ..     197     324 ..     196     325 .. 0.88
   2 ?   -0.5   0.0      0.38   1.4e+03      51      94 ..     530     573 ..     524     592 .. 0.80
   3 ?   -3.4   0.0       3.2   1.1e+04      68     107 ..     900     941 ..     887     945 .. 0.61

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 1.4e-35
                 EEEEEEESHHHHHS-SSHHHHHHHHHHHHHHHHHHHHHHHHHT-GGGEEES--TT-HHHHHHTS-........--GG..............GGGSB--- CS
     DUF3692   2 lvvsigpVqefIaaaRktrDlWagSyllSylawkaikelvekyGpdvliyPslrgnplvdawlle........klee..............eletalip 78 
                 l ++igpVqefIa+aRkt+DlW gSyllSyl+++aik+l +++Gpd++i+P+l+g+pl+d + ++        k  +                 t+++p
  CCG92465.1 197 LLFQIGPVQEFIAQARKTKDLWSGSYLLSYLIAHAIKALTDRLGPDAVIFPALYGQPLFDWLHMDelynkiktK--DnkslwdtefdyplgLILTPNFP 293
                 789*********************************************************99998666666551..155677777777777999***** PP

                 SEEEEEEE.TTTHHHHHHHHHHHHHHHHHHHH CS
     DUF3692  79 nrfvlilpkeeeaeelaeeveealkeawkeia 110
                 nrf++++p++ +ae l +++e++l+++++ei 
  CCG92465.1 294 NRFLALIPDD-KAEVLSQSIEKELQNKLEEIS 324
                 ********66.58999999********99985 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.38
                 ES--TT-HHHHHHTS---GGGGGSB---SEEEEEEE.TTTHHHH CS
     DUF3692  51 yPslrgnplvdawllekleeeletalipnrfvlilpkeeeaeel 94 
                 +P++ +n +v+++ll++l++  ++  + n fv  l+k+ e+ e+
  CCG92465.1 530 VPDVAANSWVKEVLLKQLDKDHDINKYCNDFVQSLQKAYENGEI 573
                 5999999*********9999999999999999999977643333 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.2
                 -GGGGGSB---SEEEEEEE.TTTHH..HHHHHHHHHHHHHHH CS
     DUF3692  68 leeeletalipnrfvlilpkeeeae..elaeeveealkeawk 107
                 +e++   + +p r+  ++ +  +    el+e+v+e +k+ ++
  CCG92465.1 900 YENNRISGKLPYRIAELVSCYFQYGndELNEQVKEIIKNDIR 941
                 555555666666666666655532234777777777776655 PP

>> DUF3293  Protein of unknown function (DUF3293)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.7e-05     0.098       5      53 ..     618     671 ..     617     702 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.7e-05
     DUF3293   5 NPasenlsaeeNaaaq.eqLleelkklglpvlpavgadedge..Ws..EesflV 53 
                 NP s++++++eNa ++ + L+++l++   p+++++++d d++  W   E+s + 
  CCG92465.1 618 NPTSRKRENSENALRHlKTLQKRLNSEPTPYIAILAMDGDSMgkWLsgEKSPCF 671
                 9************988478*************9999665543339889998665 PP

>> mCpol  minimal CRISPR polymerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.91   3.3e+03       2      13 ..     652     663 ..     651     685 .. 0.87
   2 ?   10.5   0.0   0.00016      0.57      27      68 ..     708     751 ..     704     770 .. 0.79
   3 ?   -3.4   0.0       3.2   1.2e+04      94     108 ..     839     853 ..     835     858 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.91
       mCpol   2 iaiDGDdiGkkl 13 
                 +a+DGD  Gk l
  CCG92465.1 652 LAMDGDSMGKWL 663
                 689******977 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00016
       mCpol  27 klskevkeaikklkkllkdelgasvifaaGDsilaksslee..d 68 
                 +ls+ +++++  l+  + ++   ++i+++GD+ila+ ++e+  +
  CCG92465.1 708 ELSSALANFSLYLAPSIVHQHYGQLIYSGGDDILAMLPAEKalQ 751
                 57788888888889889999899*************99977333 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.2
       mCpol  94 realiaLkkAkskgk 108
                 +ea  aL  Aks+g 
  CCG92465.1 839 EEAKNALEIAKSSGY 853
                 567778888888764 PP

>> VWA_N  VWA N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.5      0.24   8.8e+02      81     108 ..     335     362 ..     311     370 .. 0.89
   2 ?    5.1   0.0    0.0085        30      62     102 ..     455     495 ..     430     497 .. 0.83
   3 ?   -2.0   0.0       1.3   4.7e+03      85     120 ..     560     595 ..     545     598 .. 0.74
   4 ?    1.7   0.0     0.094   3.4e+02      12     109 ..     673     772 ..     666     776 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.24
       VWA_N  81 nainwseaLdevfkknlkedpsLkwqyF 108
                 ++i+w +++++ ++++ ++   ++wq++
  CCG92465.1 335 KGIEWNDNIQKRWNDQIEDFLFISWQVY 362
                 789***********************99 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0085
       VWA_N  62 nlsavhvPtnvydrapevlnainwseaLdevfkknlkedps 102
                   s   vP ++y +++e + + nw ++L++  k+ +ke + 
  CCG92465.1 455 FRSRFGVPKDMYSGKEECIGDENWQKSLHDKIKHTFKEGER 495
                 556777***********************999998888665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.3
       VWA_N  85 wseaLdevfkknlkedpsLkwqyFgSetGflrvyPa 120
                  +++L++ +++   e+ ++  + F S + fl+ yP 
  CCG92465.1 560 FVQSLQKAYENGEIEEIKIDEKKFQSPEEFLKEYPS 595
                 467778888888888888888888899999999987 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.094
       VWA_N  12 kdleeeniqyynakkteeeedgeeeeeeeneskeleLtedanFknlkvnsnlsavh..vPtnvydrapevlnainwseaLd..evfkknlkedpsLkwq 106
                  +l++e ++y+n+++  e ++  ++++    s+++eL   + + n ++    s vh    + +y +  ++l  +   +aL+   v++k ++ dp+L+  
  CCG92465.1 673 TQLSKEAKEYFNNQQLLELQQILKTKRPLFPSYHIEL--SSALANFSLYLAPSIVHqhYGQLIYSGGDDILAMLPAEKALQcaYVLRKAFRGDPTLSES 769
                 567788999****999555555555555555555555..555555566666666665599999999999999999999997335778999999999877 PP

       VWA_N 107 yFg 109
                 ++g
  CCG92465.1 770 FYG 772
                 776 PP

>> Vwaint  VWA / Hh  protein intein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00014       0.5      28      62 ..     218     256 ..     199     260 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
      Vwaint  28 wGrhYllSllsaHarQrcnsfkdpg....pqaYgsplfk 62 
                 w   YllS+l aHa +  + +  p+    p  Yg plf+
  CCG92465.1 218 WSGSYLLSYLIAHAIKALTDRLGPDavifPALYGQPLFD 256
                 5567******************7776666666*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (998 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       986  (0.0549947); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 6617.54
//
Query:       CCG92466.1  [L=432]
Description: hypothetical protein MFUM_700015 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-57  193.9   0.0    7.9e-57  193.4   0.0    1.2  1  Cas_Cmr3  CRISPR-associated protein (Cas_Cmr3)


Domain annotation for each model (and alignments):
>> Cas_Cmr3  CRISPR-associated protein (Cas_Cmr3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.4   0.0   4.4e-61   7.9e-57       2     371 .]       5     426 ..       4     426 .. 0.89

  Alignments for each domain:
  == domain 1  score: 193.4 bits;  conditional E-value: 4.4e-61
    Cas_Cmr3   2 llePlDplffrdgrpFedgeearaasllfPlPsTlaGavrtalgekagldfgklleeekar.......dgealgeiavrGpllvrepdgkeellfPaPa 93 
                  l P+D+ ffrd++p ++g+ ++     +PlP T+  a+r+al+   gl  ++ ++  ++r         ea + + + Gp+ v    ++ +l+fP P+
  CCG92466.1   5 DLIPFDTCFFRDSKPLAAGS-SYGRGARWPLPLTIHSAIRSALLSLSGLTPTEKKNGYERRgksqgkiGTEAYNWLHIKGPFPVD--RKEHRLFFPTPL 100
                 578****************9.58*************************9997777766666799999777777888999*****9..89999******* PP

    Cas_Cmr3  94 dllv...kekkeglvqllrlepr......dlpeglgplglpdreeveeprpkkkpkplpaylsleglskwLrgelpess..elvkeedlltkeeRigia 181
                 d+     +e++ +l     l+p       +l e    l+ p r++v +++p +k++p p ++s+e  + +L+++l e+   e   +++l+  e+Rigi 
  CCG92466.1 101 DISWcihQENNRSLKPSKLLRPLkqtemfNLSECKSNLPNPLRYPVVSQDPPSKVRP-PSFVSSEFYKYYLEDKLNEINssECSGDKELWDSEYRIGIG 198
                 ***99*977777777777777777789997777777777777888887777777765.79**************97755227777888*********** PP

    Cas_Cmr3 182 ldpetrtaeegalyqteglrlkedvrlallvelddpaeeekle........pailrLGGerrlalveeelseelesvpeeveaaiaeggrlrlvLlTPa 272
                 ++pet+t+ee++l+++e+lrl+e+ rl +++  +   + ++++        + + ++GGe r+++ve+    + + ++++++++  ++ rl+ vLl+Pa
  CCG92466.1 199 INPETQTVEESKLFAAEHLRLREGIRLCFSINDPPFYKLQNPDespieclnQETITVGGEDRFFKVEK---VKEPLLFPSLDVNDLKTTRLKWVLLSPA 294
                 *******************************9999888877778999*********************...777778888888888************* PP

    Cas_Cmr3 273 ifakgwrpgwldkek.................................eleleelsaelvaaavkrpvavSgwdlarkkpkptrravPaGsVyfleake 338
                 if +gw+pgw d +k                                 + e++ ++a lvaa++++p +++gw + +k p+pt  avP+GsVy++e+++
  CCG92466.1 295 IFSQGWLPGWIDPQKqkenvllraidkekrrvfrkqrrsdrewkydpsKDEAPPIKATLVAARIGKPIIIGGWEVLEKGPRPTLLAVPPGSVYYFETEK 393
                 ***********99999*************************77777777777777777***************************************99 PP

    Cas_Cmr3 339 eeneeleelealtlsdaeqdrrdGfGlaligvw 371
                 ee+ +    + +  + +    + GfGl l g+w
  CCG92466.1 394 EEDTKSLFQALHERCRSDYYGEKGFGLGLCGTW 426
                 8888777777777899999************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3453.35
//
Query:       CCG92467.1  [L=316]
Description: hypothetical protein MFUM_700016 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-19   70.1   0.0    5.2e-19   69.1   0.0    1.5  1  RAMPs     RAMP superfamily


Domain annotation for each model (and alignments):
>> RAMPs  RAMP superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   2.9e-23   5.2e-19       4     211 ..      13     298 ..      10     300 .. 0.89

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 2.9e-23
                 ESS-EE----..............---S----HHHHHHHHHHHHH.....HHHH.HHHTT-HHHHH.H.........HHHHHH--S...SS--SEEEEE CS
       RAMPs   4 tltPlhiGdgkisdekeespefrdkgglPyIPGSSlkGalRsale.....kllgsekkekkdeysrkkekqrvkkgdleeaiFGneeeskiagrvffeD 97 
                 t t lh+G+g++ + +++++ +++++  P+IPGS lkG++   +      ++  +  ++k+++y r+            + +FG e      g++ f+ 
  CCG92467.1  13 TRTSLHVGSGGSVGAIDLPIIRERHTAFPIIPGSALKGVFADEWIeinenTYQSNDAEIKEHIYQRNT---------EGKDLFGTE---EKGGMLQFSE 99 
                 78***************************************888846663333344445555555544.........6699*****...********** PP

                 ................................................................................................... CS
       RAMPs  98 arpvkipgqileeskqikstpsp............................................................................ 120
                 a+++ +p ++ ++   + ++p+                                                                             
  CCG92467.1 100 AKLLLFPIRSPKGCFGWITCPLIlkrycrdtgqtildsiqlsdnkalfkkesclcineggkekvileeyifektqedseeiikafvnqlpvdlvsidpi 198
                 *************************************************************************************************** PP

                 .........EEEEEEEEEEEEEEEEE--SSS-EEEEEE...-TT-EEEEEEEESS..................HHHHHHHHHHHHHH.HHH---STTTT CS
       RAMPs 121 .........klsgselrelldhsterrtrvaidrktktngkkkgglftleaipae....rikfsgrirlenlsdeelgallklLdlldlhflglGggkp 206
                            s+s  + + +   e+  +v+i++kt+t+++  g+lf+ e +p e     i ++g  r en ++ ++ + +k+ ++     ++ G++  
  CCG92467.1 199 wkeignrlvIVSDSMMSFFTQSACEIAQHVKINDKTGTAES--GALFNQENVPSEtafySIVRKGPSRNENSFKPIEVLEKKIKEKN--YLFQFGADAG 293
                 *****************************************..************99977777777777766666666666655555..9999999999 PP

                 BTTT- CS
       RAMPs 207 lGfGs 211
                  G+G+
  CCG92467.1 294 TGLGY 298
                 99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2307.46
//
Query:       CCG92468.1  [L=121]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-16   59.7   0.7    5.1e-16   59.1   0.7    1.2  1  Cas_Cmr5   CRISPR-associated protein (Cas_Cmr5)
  ------ inclusion threshold ------
      0.021   13.9   0.2      0.026   13.6   0.2    1.1  1  FUSC-like  FUSC-like inner membrane protein yccS


Domain annotation for each model (and alignments):
>> Cas_Cmr5  CRISPR-associated protein (Cas_Cmr5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.7   5.7e-20   5.1e-16      21     120 ..      14     115 ..       4     116 .. 0.81

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 5.7e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHC...TSS...STTTCHHHHHH.HHSTHHHHHHHHHHHHHHHHHH CS
    Cas_Cmr5  21 kkkekkykslvkklPalIltnGLgqalAfllskgkkkkedahkkllehlaewlkke...ksaskkkkgendllkel.leadlseymratreaLallnWl 115
                 kk e+  k+ v++lP lI++nGL+++lAf+ ++    +++  k  ++++ae+l+k+   k +++++++++++l++l ++ ++ ++ +at e+L++l +l
  CCG92468.1  14 KKAEGLKKESVNRLPGLIVSNGLLATLAFVCEEK--PEREPLKIAMDAVAEYLSKRnilKDIKENNNAAKEMLHQLiTKGSSLDLQQATYETLKYLAYL 110
                 5556666789********************9995..8888999999************9666666666666555551666699**************** PP

                 HHHHH CS
    Cas_Cmr5 116 kRfAe 120
                 kRf+e
  CCG92468.1 111 KRFSE 115
                 ***97 PP

>> FUSC-like  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   2.9e-06     0.026      93     159 ..      41     107 ..      33     120 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.9e-06
   FUSC-like  93 sllfpnrpvqqsLaelfealAdYleaKaslfepdreddleakrlaLaqqnakvvealnaareillsr 159
                 +++++++p+++ L  +++a+A+Yl ++  l + +++++ ++  l  + +  +  + ++a++e+l + 
  CCG92468.1  41 AFVCEEKPEREPLKIAMDAVAEYLSKRNILKDIKENNNAAKEMLHQLITKGSSLDLQQATYETLKYL 107
                 577899*******************999999888555555555555566677789999999999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       980  (0.05466); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 914.38
//
Query:       CCG92469.1  [L=471]
Description: hypothetical protein MFUM_700018 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-05   25.3   4.5    2.2e-05   24.6   0.0    2.9  3  RAMPs           RAMP superfamily
     0.0044   15.2   6.8     0.0064   14.7   6.8    1.2  1  DUF2828         Domain of unknown function (DUF2828)
  ------ inclusion threshold ------
       0.65   10.1   6.2        1.1    9.3   6.2    1.3  1  RP-C_C          Replication protein C C-terminal region


Domain annotation for each model (and alignments):
>> RAMPs  RAMP superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.69   4.1e+03      91     106 ..      46      61 ..      13      86 .. 0.59
   2 !   24.6   0.0   3.8e-09   2.2e-05      28     213 .]     109     328 ..      97     328 .. 0.68
   3 ?   -0.7   2.4      0.21   1.3e+03     134     145 ..     358     369 ..     331     461 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.69
                 -SEEEEE......... CS
       RAMPs  91 grvffeDarpvkipgq 106
                 ++  f+ a  +k+p+ 
  CCG92469.1  46 RKAQFSTAINIKNPNI 61 
                 3333444444444433 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 3.8e-09
                 ---S----HHHHHHHHHHHHH.HHHH.......................HHHTT-HHHHH.H..................................... CS
       RAMPs  28 kgglPyIPGSSlkGalRsale.kllg......................sekkekkdeysrkkekqrvkkgd............................ 75 
                  +g PyIPGS  kG  R  +  kll+                      +                                                  
  CCG92469.1 109 RFGIPYIPGSAAKGCARRMAIeKLLEasehekiqllsqialvfgwselD---------------------Wknennsdfyygcsntpplvddvvdqaag 186
                 6899*************77764444455555555555555555443331.....................02222222233346777777789999999 PP

                 ...............HHHHHH--S...SS--SEEEEE.......................EEEEEEEEEEEEEEEEE--SSS-EEEEEE........-T CS
       RAMPs  76 ...............leeaiFGneeeskiagrvffeDarpvkipgqileeskqikstpspklsgselrelldhsterrtrvaidrktktngk.....kk 154
                                l +++         ag ++f  a+p++      ee+k +        + +      +h ++ ++++ +++ ++++++     + 
  CCG92469.1 187 lvleamsiptktddkLRNQLIKTV--PNYAGTIRFLPAYPIPENFYPTEEKKLV------GNELELDVITCHHQKYYSHETGWEDAWDKEDPipvffPA 277
                 999999999998888889999887..9**************9877666666665......345555555556666666667777777666665543322 PP

                 T-EEEEEEEESS...................HHHHHHHHHHHHHH.HHH---STTTTBTTT-EE CS
       RAMPs 155 gglftleaipae.....rikfsgrirlenlsdeelgallklLdlldlhflglGggkplGfGsve 213
                  ++               i  s+r       d +l++l++ L+ +     g+G+++  G+G+++
  CCG92469.1 278 VSP--------YlifcfCIHPSTRRANGKVKDFALEWLKNGLESF-----GIGAKTAAGYGWFK 328
                 333........2444444444777777888888888888888888.....************96 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.21
                 EEEE--SSS-EE CS
       RAMPs 134 sterrtrvaidr 145
                 + e++ r +i++
  CCG92469.1 358 KEEEEERRKIEK 369
                 111111111111 PP

>> DUF2828  Domain of unknown function (DUF2828)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   6.8   1.1e-06    0.0064     100     204 ..     316     420 ..     283     459 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-06
     DUF2828 100 kdvkegvshGywKDllnilalavegelvlkdpkkvlnvkkekkkeekkkkkkkkkkekkkerkkeekekkeeekeeakekrkekeaeraekllekl.es 197
                    k+++ +G++KD  n +   +e+ +++++ ++  + +k+kk+ee++++k +k+ +k+++ ++++k  + eeke+ k ++++++++ ++kl++ + +s
  CCG92469.1 316 IGAKTAAGYGWFKDCTNKVEEKLEKIRKEEEIRQKEQEEKRKKEEEEERRKIEKE-KKQQKFEEATKGMSPEEKEAFKLHSEKNDQQFKDKLINDFlKS 413
                 45678889*********99999998884555444444444444444444443333.3333444556666667777778888888888888888765166 PP

     DUF2828 198 dkkyraL 204
                 d++ +++
  CCG92469.1 414 DANQQLV 420
                 6655544 PP

>> RP-C_C  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   6.2   0.00018       1.1      26     134 ..     321     441 ..     316     465 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00018
      RP-C_C  26 eelleelealreevenalesalkaenssanesqnerhiqnsnpdsssesepasekereekeaaaasaeaepsek....................ksvpl 104
                 ++ + +++   ++ve+ le+  k+e+ + +e++++r++++ ++  ++e+e++++k +e+++  + +++++   k                    ++ + 
  CCG92469.1 321 AAGYGWFKDCTNKVEEKLEKIRKEEEIRQKEQEEKRKKEEEEERRKIEKEKKQQKFEEATKGMSPEEKEAF--KlhsekndqqfkdklindflkSDANQ 417
                 5667899999999*****99999999999998888888888886666655333333333333222222221..01223345566666666666655566 PP

      RP-C_C 105 glvlkacPeiadYapdgairsWrdLvaaAe 134
                 +lv  +c  i+++ p g    W+++ +aA+
  CCG92469.1 418 QLVFYLC--IKKHKP-G---VWEEINKAAQ 441
                 6666666..566666.3...5777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3106  (0.173239); expected 358.6 (0.02)
Passed bias filter:                      867  (0.0483574); expected 358.6 (0.02)
Passed Vit filter:                       185  (0.0103185); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.44
# Mc/sec: 3221.96
//
Query:       CCG92470.1  [L=159]
Description: hypothetical protein MFUM_700019 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.012   15.7   0.2      0.031   14.3   0.2    1.7  1  RAMPs     RAMP superfamily


Domain annotation for each model (and alignments):
>> RAMPs  RAMP superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   1.7e-06     0.031      39     105 ..      18      76 ..      12     142 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHHHHH.HHHTT-HHHHH.H.........HHHHHH--S...................SS--SEEEEE........ CS
       RAMPs  39 lkGalRsalekllgsekkekkdeysrkkekqrvkkgdleeaiFGne................eeskiagrvffeDarpvkipg 105
                 ++G lR++l+ l g  +    +e+ +k          le+ iFG++                             ++  ++++
  CCG92470.1  18 IRGQLRWWLRLLGG-FN--CLSEDACK----------LESNIFGSAvssslaskpiikalsvH-----------RSKRKSKEN 76 
                 8********86655.33..33333332..........*********66666333333333332...........333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1189.06
//
Query:       CCG92471.1  [L=49]
Description: hypothetical protein MFUM_700020 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 345.38
//
Query:       CCG92472.1  [L=410]
Description: hypothetical protein MFUM_700021 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-76  255.8  10.8    1.2e-75  255.4  10.8    1.2  1  Cas_DxTHG       CRISPR-associated (Cas) DxTHG family
  ------ inclusion threshold ------
       0.05   13.9   0.5       0.23   11.8   0.1    2.4  2  HEPN_Swt1       Swt1-like HEPN
       0.06   13.6   0.0       0.21   11.9   0.0    2.0  1  Retrotrans_gag  Retrotransposon gag protein
       0.12   12.7   0.1        1.9    8.8   0.0    2.6  2  AAA_22          AAA domain
       0.97    9.4   4.6       0.93    9.5   0.2    3.1  3  GerD            Spore germination GerD central core domain
        1.8    9.0  13.2      0.098   13.1   0.6    3.4  3  HEPN_Apea       Apea-like HEPN


Domain annotation for each model (and alignments):
>> Cas_DxTHG  CRISPR-associated (Cas) DxTHG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4  10.8   3.9e-79   1.2e-75       3     359 .]       6     380 ..       4     380 .. 0.85

  Alignments for each domain:
  == domain 1  score: 255.4 bits;  conditional E-value: 3.9e-79
   Cas_DxTHG   3 isflGtgnykevkYelkeeeeeeketsfvqeallellaekedpdkvvilltdtladkeaeekeeaaklkeeleelle.iekvdveiipgggteeelwei 100
                 +sflGtgny+ +kY++ +  ++++et+f++ al+     +++   +   lt+     + e+ ++ ++lkee++ ++  +e   ++ ip+g++e+elw+i
  CCG92472.1   6 LSFLGTGNYRSTKYSFSQ--RRHHETKFFPLALALEK--HPK--TIFMALTK-----KIENGDNWKELKEEFKAKNFkYE---IICIPEGKEEQELWDI 90 
                 8**************744..789**********8544..666..77777777.....3333344444*****85444254...556************* PP

   Cas_DxTHG 101 fekllekleendeiilDiThGfrylPvlallalaylrnvknltikgiyYgaf..keeeedPildlteflelsdwltaverflktgdaeklaellre... 194
                 fe + + +++++e+i+DiThG+r+lP++al+++ ylr+vk+++ikgi+Yga+  ++++++P++dl+ fl+l +wl a +rf++ gd +++a+ll++   
  CCG92472.1  91 FESIAKMIPKQSELIIDITHGYRSLPLIALSTIVYLRQVKEVNIKGIFYGAYeaNKNDITPVFDLSIFLDLIEWLGASKRFIDLGDSSEFAKLLNKiqn 189
                 **********************************************************************************************88865 PP

   Cas_DxTHG 195 ..kkek.kkek.lkklkklkeklkkeleefskalelirplellekaekleke...ivek..lkeeleeiesleeeesakplellldeikkklekf.... 280
                   ++ek k+ek +++lk+l +    +l+ +s al+l+r le+     k+ k+   i+++  l+ee++++        akpl l++de+k++++      
  CCG92472.1 190 elYQEKdKEEKkPTHLKNLGS----SLKDLSLALNLSRVLEIP----KICKRvedILKNqeLREEINKW--------AKPLDLVIDEVKETYKATafdg 272
                 443333533336999999999....*************66665....4444433344444566777777........9****************99999 PP

   Cas_DxTHG 281 lkkq...ikwclekgliqqaltllreliisllle..gedilnkkkrreeieeelknlskvekksseekeek...........................l 347
                 l+ q   +k +l++g+++q  tllre+iis+++e  ++d ++ +kr +e+e+ l+nl ++++++++e+  +                           +
  CCG92472.1 273 LHGQielAKKYLQHGYVMQCATLLREWIISYVCEviQDDSNDPEKR-KEVENILNNLGHKIRNNRPED--SlqsredkeniknklssldpklieawsrI 368
                 77778889***********************777799999999999.*******99999888877664..24589************************ PP

   Cas_DxTHG 348 sniRNdiaHaGl 359
                  ++RNd+aH+G+
  CCG92472.1 369 IQVRNDLAHCGM 380
                 ***********9 PP

>> HEPN_Swt1  Swt1-like HEPN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.5   4.5e+03      21      73 ..      54      67 ..      38      97 .. 0.62
   2 ?   11.8   0.1   7.7e-05      0.23      68     113 ..     350     407 ..     292     408 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.5
   HEPN_Swt1 21 aygedwweeveaslekdeeekkesekeiskldvqdllrvitenWkevFkkkls 73
                ++g+                                      nWke +k++++
  CCG92472.1 54 ENGD--------------------------------------NWKE-LKEEFK 67
                3333......................................4444.333333 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 7.7e-05
   HEPN_Swt1  68 Fkkklsraersla...seLrevRNkwaHq.........esfstddayraldtierllr 113
                 +k+kls+ + +l+   s +++vRN++aH+          +  ++++++ald+ie+ll+
  CCG92472.1 350 IKNKLSSLDPKLIeawSRIIQVRNDLAHCgmgrkkeilANELKNQVEKALDSIEELLQ 407
                 67777777755442227899********8677775444244567899*********97 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.1e-05      0.21       6      42 ..      37      72 ..      33      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.1e-05
  Retrotrans_gag  6 slegaAkswlkslvarsidasesWkdlkkaflktflp 42
                    +le + k+++  l ++ ++  ++Wk+lk++f++++++
      CCG92472.1 37 ALEKHPKTIFMALTKKIEN-GDNWKELKEEFKAKNFK 72
                    5777778888888887777.6*************997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00063       1.9      28     134 ..      20     145 ..      11     147 .. 0.84
   2 ?    0.7   0.1      0.19   5.7e+02      44      84 ..     171     214 ..     160     263 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00063
      AAA_22  28 qldeeakaee..........erpevvfvtlpsstsskdllrellralglelka.......erlsseellealeqalraravielliiDEaqhlr..see 107
                 ++ ++ ++e+          ++p+++f+ l+++ +  d ++el ++++ ++ +       e+++++el++ +e  ++   +++ liiD  +  r  +  
  CCG92472.1  20 SFSQRRHHETkffplalaleKHPKTIFMALTKKIENGDNWKELKEEFKAKNFKyeiicipEGKEEQELWDIFESIAKMIPKQSELIIDITHGYRslPLI 118
                 555666666677777888889***************************99999*******99999999999999999999999999*988888644588 PP

      AAA_22 108 aleeLrsllnlsrkgvqliLvGtpelr 134
                 al++++ l  +++ +++ i+ G +e++
  CCG92472.1 119 ALSTIVYLRQVKEVNIKGIFYGAYEAN 145
                 888888887777888888888888765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.19
      AAA_22  44 fvtlpsstsskdllrellralglelka...erlsseellealeq 84 
                 f++l  s++ ++ll+++ ++l +e+++   ++  ++ l + l +
  CCG92472.1 171 FIDLGDSSEFAKLLNKIQNELYQEKDKeekKPTHLKNLGSSLKD 214
                 67777777778888888888877777755544444444444444 PP

>> GerD  Spore germination GerD central core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.65   1.9e+03       7      37 ..      44      74 ..      40      85 .. 0.82
   2 ?    9.5   0.2   0.00031      0.93      54      91 ..     212     249 ..     177     253 .. 0.80
   3 ?   -0.7   0.0      0.45   1.3e+03      56      69 ..     314     327 ..     302     370 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.65
        GerD  7 evkkaiektltsekgkkfwkklfkdpkfaea 37
                ++  a++k++ + ++ k +k+ fk  +f+ +
  CCG92472.1 44 TIFMALTKKIENGDNWKELKEEFKAKNFKYE 74
                6667888899999999999999999998765 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00031
        GerD  54 mkDpeYqkmlleilkdpemekqllellkskeyrkqlek 91 
                 +kD +   +l  +l+ p++ k ++++lk +e+r++++k
  CCG92472.1 212 LKDLSLALNLSRVLEIPKICKRVEDILKNQELREEINK 249
                 78888888999************************987 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.45
        GerD  56 DpeYqkmlleilkd 69 
                 Dpe +k++ +il++
  CCG92472.1 314 DPEKRKEVENILNN 327
                 44444444444443 PP

>> HEPN_Apea  Apea-like HEPN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.3   3.8e+03      50      54 ..      62      66 ..      18     105 .. 0.56
   2 ?    1.9   2.4       0.1     3e+02      19      70 ..     141     201 ..     127     270 .. 0.72
   3 ?   13.1   0.6   3.3e-05     0.098      37      97 ..     305     386 ..     268     399 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.3
   HEPN_Apea 50 iteki 54
                ++e++
  CCG92472.1 62 LKEEF 66
                33332 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.1
   HEPN_Apea  19 eaireeddedaildlvialEaldll........ldkkeeitekislrsnaylke..dkeerk 70 
                     +++d + + dl i l+ ++ l        l++++e ++ + ++++++l++  dkee+k
  CCG92472.1 141 AYEANKNDITPVFDLSIFLDLIEWLgaskrfidLGDSSEFAKLL-NKIQNELYQekDKEEKK 201
                 44444555555889999999994448888998844445588777.77774443323444443 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 3.3e-05
   HEPN_Apea  37 lEaldll.......ldkkee.......itekislrsn...aylkedkeerkelkkki...........kklYdlRSkivHggkikkkdl 97 
                  E ++ +       +    e       + +ki++  n    +l++  e+++++k+k+           +++ ++R++++H g   kk++
  CCG92472.1 305 CEVIQDDsndpekrK----EvenilnnLGHKIRN--NrpeDSLQS-REDKENIKNKLssldpklieawSRIIQVRNDLAHCGMGRKKEI 386
                 455533355443331....022211124455532..122333333.6666666555333333333333************997665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1559  (0.0869541); expected 358.6 (0.02)
Passed bias filter:                      745  (0.0415528); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 2860.95
//
Query:       CCG92473.1  [L=317]
Description: hypothetical protein MFUM_700022 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-22   79.7   0.1      2e-22   78.8   0.1    1.5  1  Cas_csx3  CRISPR-associated protein (Cas_csx3)
  ------ inclusion threshold ------
      0.057   13.5   0.0       0.13   12.3   0.0    1.6  1  AAA_14    AAA domain
      0.085   13.1   0.0       0.19   12.0   0.0    1.6  1  AAA_22    AAA domain
       0.13   12.6   0.0       0.27   11.6   0.0    1.6  1  AAA_16    AAA ATPase domain


Domain annotation for each model (and alignments):
>> Cas_csx3  CRISPR-associated protein (Cas_csx3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.1   4.5e-26     2e-22       5      78 ..      24      96 ..      20      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 4.5e-26
                -SS--GGGGGT-----.--TTSEEEEEESS-HHHHHHHHHHTTTSSEEEEEETTT.EEEEEEESS.SS-TT-EE CS
    Cas_csx3  5 ereiepedLkklelPeeidlkqgvvisGrgPiWlygylvhelhetawiavydprLegavvvashtrevrvGqvi 78
                ++++e + Lk++elP+ ++ ++gv++ Gr+PiW+yg+ vh++h+ +wia++dpr++g ++ a h+++ + G vi
  CCG92473.1 24 NGILEASILKNIELPK-VNYAKGVILYGRAPIWIYGFFVHQFHPCRWIAIFDPRMGGIIIEAHHIEAPQLGYVI 96
                6789999*********.**************************************7777777788999999998 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.9e-05      0.13       3      48 ..     131     172 ..     129     243 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.9e-05
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkklad 48 
                  i++++G+ ++GK+++l  l +e+l   ++il i++ +e++++++ 
  CCG92473.1 131 LIIALVGPPHSGKSVFLMLL-QESL---KRILPISFYQEKTYTIRA 172
                 5899************8655.7888...8*********99966553 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.3e-05      0.19       6      38 ..     131     165 ..     128     222 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.3e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee...e 38 
                  i++++G++++GK++ l  l+e+l+ ++ +     e
  CCG92473.1 131 LIIALVGPPHSGKSVFLMLLQESLK-RILPISfyqE 165
                 689*****************99994.4444446333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     6e-05      0.27      23      52 ..     123     166 ..     106     223 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6e-05
      AAA_16  23 rp......elvllsGesGvGKsslvrellralekd........g 52 
                  +       ++ l+G++ +GKs  +  l+++l++         +
  CCG92473.1 123 KTssppstLIIALVGPPHSGKSVFLMLLQESLKRIlpisfyqeK 166
                 2223356699*******************998876444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2306.56
//
Query:       CCG92474.1  [L=370]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-35  121.5   0.0    5.7e-35  120.9   0.0    1.3  1  Cas_NE0113  CRISPR-associated protein NE0113 (Cas_NE0113)


Domain annotation for each model (and alignments):
>> Cas_NE0113  CRISPR-associated protein NE0113 (Cas_NE0113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0   3.2e-39   5.7e-35       1     190 [.      16     226 ..      16     245 .. 0.87

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 3.2e-39
  Cas_NE0113   1 sPqVvTetldaLlqege..pvdevvvittkdgkvrealelL.................leeflkdyga..kikldesaihviedvsgeelaDirteedn 78 
                 sP+V+Tetl aL++e+    ++ + ++tt  gk+ +  elL                 +++  kd  +  +ik+  s+     + +  el+Dir  +dn
  CCG92474.1  16 SPAVITETLWALAEENPpiYPKYIDIVTTAIGKKVIEKELLeprgkclweefrnwlikEKNIPKDSHIlrEIKVIVSPF--LDQGKCLELEDIRNIKDN 112
                 7*************99977899**********************99998888444444444444444433344333333..6778899*********** PP

  Cas_NE0113  79 eallqlivrlvrelrenegerlhlsiaGGRKtmsillalaaqLygreqDrlyHvlveeefes...nreflyppkesaiialkpenkqldarkaevtLve 174
                 e+ ++ i+++vr+ +en++++l +s+aGGRKtm+ill +a++++gr+ Dr+ Hvlv+e ++    +++f+ p+++++i++    n  + a+ a+++L++
  CCG92474.1 113 EETADYILEEVRKITENPDTQLIASVAGGRKTMGILLYSAVSMLGRKGDRITHVLVNEPYDDprlQPKFYFPQQKEQILKTITGNI-VYAKDAKIELAD 210
                 *************************************************************9998999999999999988887776.578899****** PP

  Cas_NE0113 175 iPfirlremlpeellk 190
                 iPf+++re +p+e  +
  CCG92474.1 211 IPFVKFRELFPKEFGR 226
                 ***********98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2382.46
//
Query:       CCG92475.1  [L=335]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-83  278.8   0.0    4.8e-83  278.6   0.0    1.0  1  Cas_Cas1  CRISPR associated protein Cas1


Domain annotation for each model (and alignments):
>> Cas_Cas1  CRISPR associated protein Cas1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.6   0.0   2.7e-87   4.8e-83       2     282 ..       5     290 ..       4     291 .. 0.96

  Alignments for each domain:
  == domain 1  score: 278.6 bits;  conditional E-value: 2.7e-87
                 EEESTEEEEEEETTEEEEEE.SSE......EEEEEECCCEEEEEEESTEEEEHHHHHHHHHTT-EEEEE-TTS-EEEEEEESSSSTHHHHHHHHHHHHS CS
    Cas_Cas1   2 yvteqgaylrkkgerlvvek.ege......ekkeiplediesivifgevslstkalrllaekgipvvflsengkylgrlepeesgnvelrraQyraadd 93 
                 y+ +  a++++ +erl+v + + +       ++eipl+++e++v+   vs++t+al  l+ ++ip++f+  ng++lg + p+ +++++ r++Qy+ + d
  CCG92475.1   5 YILQTYAKVSLCSERLQVVSyN-KengteeLIREIPLRELERLVLDQTVSITTPALCELLLRNIPISFIGFNGQILGGFFPPPNSHGLWRLKQYQNCLD 102
                 7788888899999***999951.3345555899****************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHCCHHCTTHHHHCHCHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHHHHCSCGGS-SS-SSSS-SSHHHHHH CS
    Cas_Cas1  94 eekrlelakkivagklenqrkvlrrlkrdreeeeleeaieeleelleklekaesleeLrgiEGeaakaYfeafdkllkeefefegRsrrppkDpvNalL 192
                 ++  l+  k++v++k++nqr+ l+rl+++r + + e+ ie l++ll k+++a +++e+rg+EG+  ++Yf++++++l++ef fe+Rs+rpp +pvNa++
  CCG92475.1 103 PKSVLAYSKQLVKAKIYNQRRSLQRLSSNR-KINNENDIEWLNHLLFKVASAATVDEIRGYEGASTARYFQCWATFLPQEFPFERRSNRPPLNPVNACI 200
                 ******************************.6788999************************************************************* PP

                 HHHHHHHHHHHHHHHHTSS--TT--SSS--TTSS-HHHHHHHHHHHHHHCHHHHHHHHHTTSS-GGGEEEETTEEEE-HHHHHHHHHHHH CS
    Cas_Cas1 193 sfgYtllysevlsaieavgLdPyiGfLHedrpgrpsLalDLmEefRpllvDrlvlslinkrqlkekdFekeengvlLteegrkkfleafe 282
                 sfg tlly+e+++ i+  gLdP++GfLH+++++r sLalDL+E+fRp++v+ l+l l+++++l++++Fek+++g++L+e grkkfl+++e
  CCG92475.1 201 SFGATLLYNEMTALIHLHGLDPALGFLHAPENERWSLALDLIEPFRPVIVEALALDLFSHKILNKEHFEKKNGGCYLNELGRKKFLAQYE 290
                 ****************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2443.10
//
Query:       CCG92476.1  [L=125]
Description: hypothetical protein MFUM_700025 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-21   75.2   0.3    4.3e-21   74.9   0.3    1.2  1  CRISPR_Cas2  CRISPR associated protein Cas2


Domain annotation for each model (and alignments):
>> CRISPR_Cas2  CRISPR associated protein Cas2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.3   2.4e-25   4.3e-21       1      71 [.      35     103 ..      35     108 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 2.4e-25
                  EEEEEEEECHCHHHHHHHHHHHHHHTTEEEEETTEEEEEESHHHHHHHHHHHHHHSHTTTCEEEEEEEETC CS
  CRISPR_Cas2   1 mlvlvvYDikedrkrrrkvakilkkyGfqrvQySVFegelseaqleklkkrlkkiidpeedsiriykltek 71 
                  ml +++YD+  d++r+ k+aki++++ ++rvQ+SVFe+ l+e++le+l ++l   idp+ed+i +yk++++
   CCG92476.1  35 MLTVIAYDV-CDDRRLHKIAKICEDF-GIRVQFSVFECYLEESELEELWQKLLAEIDPKEDRIVAYKIDAR 103
                  889******.****************.****************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 935.12
//
Query:       CCG92477.1  [L=103]
Description: hypothetical protein MFUM_700026 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 783.02
//
Query:       CCG92478.1  [L=38]
Description: hypothetical protein MFUM_700027 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 291.57
//
Query:       CCG92479.1  [L=47]
Description: hypothetical protein MFUM_700028 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 360.81
//
Query:       CCG92480.1  [L=52]
Description: hypothetical protein MFUM_700029 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 384.26
//
Query:       CCG92481.1  [L=73]
Description: hypothetical protein MFUM_700030 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       176  (0.0098165); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 561.81
//
Query:       CCG92482.1  [L=44]
Description: hypothetical protein MFUM_700031 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 330.54
//
Query:       CCG92483.1  [L=70]
Description: hypothetical protein MFUM_700032 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       182  (0.0101512); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 505.86
//
Query:       CCG92484.1  [L=54]
Description: hypothetical protein MFUM_700033 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.44
# Mc/sec: 367.09
//
Query:       CCG92485.1  [L=549]
Description: hypothetical protein MFUM_700034 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.089   12.4   3.0       0.79    9.3   3.0    2.2  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.0   4.4e-05      0.79      22      88 ..     221     291 ..     201     457 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 4.4e-05
   DDE_Tnp_1  22 darwgykggk..ykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrpr...kgklvlaDaGYas 88 
                  ar+gy+++    ++++ l +a+d++ g+ ++v+++  n++ds++++ ll +l +r    + +++ D G  s
  CCG92485.1 221 LARYGYSRDYqeEQPTVILSMATDAE-GIAVHVEVHRDNRSDSTTIPKLLVTLWRRlgiAKAVFVFDCGTRS 291
                 5677788665578899**********.9********************998887777888888888887555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3845.63
//
Query:       CCG92486.1  [L=176]
Description: hypothetical protein MFUM_700035 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0063   17.5   0.0      0.011   16.7   0.0    1.5  1  Methyltransf_24  Methyltransferase domain
  ------ inclusion threshold ------
       0.15   12.0   0.0       0.21   11.5   0.0    1.3  1  DUF3197          Protein of unknown function (DUF3197)


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-06     0.011       1      36 [.     120     157 ..     120     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.3e-06
  Methyltransf_24   1 vEiGvysGvstlwllralrrnga.....grlvavdhdpgae 36 
                      +E+G  sGvst+++ +a+rrn++      +++a++++p   
       CCG92486.1 120 IEVG--SGVSTFCMREAARRNEEnggerVEITAIEPNPS-P 157
                      69**..********************9999*******94.2 PP

>> DUF3197  Protein of unknown function (DUF3197)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.3e-05      0.21      45      77 ..      91     123 ..      80     158 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.3e-05
                 EEEEESTTS.TTHHHHHHHHHHHHHHTT--EEE CS
     DUF3197  45 tedaFGpafGpeGeraLaelvrwlqekGvrkfk 77 
                 ++  FGp +G   ++aL+++vr+l+ + + ++ 
  CCG92486.1  91 SSMGFGPGYGYIEAQALHAMVRYLKPRRIIEVG 123
                 5678********************988777554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1198.10
//
Query:       CCG92487.1  [L=123]
Description: hypothetical protein MFUM_700036 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.074   12.6   0.1       0.11   12.0   0.0    1.3  1  Autoind_synth    Autoinducer synthase
      0.076   12.6   0.1        2.1    8.0   0.0    2.4  2  DMA              DMRTA motif
       0.22   12.6   0.0       0.38   11.8   0.0    1.4  1  Methyltransf_24  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Autoind_synth  Autoinducer synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.8e-05      0.11      49      81 ..      57      89 ..      45      98 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
  Autoind_synth 49 lgvkdegrvigsvRlletkgPnmltdtFsslld 81
                   l+ +   r+i ++ ll+ k P++lt++F +++ 
     CCG92487.1 57 LAFNHRFRIIFCMSLLHYKCPKVLTEVFPEYIP 89
                   56677789********************99975 PP

>> DMA  DMRTA motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00035       2.1       3      23 ..      37      57 ..      36      60 .. 0.91
   2 ?    2.1   0.0     0.025   1.5e+02       6      14 ..      79      87 ..      78      90 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00035
         DMA  3 PldiLarvFPnhkrsvLelvL 23
                P d+L + FP+ + s L++ L
  CCG92487.1 37 PRDLLKTFFPSTESSLLHAFL 57
                89***************9877 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.025
         DMA  6 iLarvFPnh 14
                +L+ vFP++
  CCG92487.1 79 VLTEVFPEY 87
                89*****86 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.4e-05      0.38      83     106 .]       7      30 ..       3      30 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.4e-05
  Methyltransf_24  83 avledleallprlapggvvlfdDi 106
                      +v + +  +lprl++g vv+f+Di
       CCG92487.1   7 DVNFLILEVLPRLREGVVVHFHDI 30 
                      567778899**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 929.00
//
Query:       CCG92488.1  [L=49]
Description: transposase (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0017   18.2   0.1     0.0018   18.1   0.1    1.0  1  DDE_Tnp_ISL3  Transposase


Domain annotation for each model (and alignments):
>> DDE_Tnp_ISL3  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   9.8e-08    0.0018     208     239 ..       1      32 [.       1      33 [. 0.93

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 9.8e-08
  DDE_Tnp_ISL3 208 lsngpvEgiNnkikaikrrayGfrnfenfrlr 239
                   ++n  +E i++ i+++kr+a+G ++f+++r+ 
    CCG92488.1   1 MTNRLIEVIHRIIQLAKRMARGLQSFRYLRIA 32 
                   58889***********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 389.77
//
Query:       CCG92489.1  [L=59]
Description: hypothetical protein MFUM_700038 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 448.68
//
Query:       CCG92490.1  [L=236]
Description: SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-15   57.8   0.0    2.9e-14   53.5   0.0    2.1  2  Methyltransf_25  Methyltransferase domain
    2.4e-15   56.6   0.0    3.3e-15   56.2   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    2.3e-12   47.1   0.0      3e-12   46.8   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    5.2e-12   46.2   0.0    1.1e-11   45.2   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
      2e-10   41.3   0.0      4e-10   40.3   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    6.8e-10   38.7   0.0      1e-09   38.1   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    2.7e-08   33.8   0.0    3.5e-08   33.4   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    6.4e-07   29.3   0.0    1.9e-06   27.8   0.0    1.7  2  Met_10           Met-10+ like-protein
    3.6e-06   26.6   0.0    3.2e-05   23.5   0.0    2.0  1  Methyltransf_4   Putative methyltransferase
      7e-06   25.7   0.0    1.3e-05   24.8   0.0    1.4  1  MTS              Methyltransferase small domain
    4.6e-05   22.8   0.0    6.1e-05   22.5   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
    7.8e-05   22.5   0.0    0.00012   21.8   0.0    1.3  1  GCD14            tRNA methyltransferase complex GCD14 subunit
    0.00044   19.5   0.1     0.0048   16.1   0.1    2.0  2  Methyltransf_3   O-methyltransferase
    0.00058   19.9   0.0    0.00097   19.1   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
    0.00094   18.3   0.0     0.0027   16.8   0.0    1.5  1  RrnaAD           Ribosomal RNA adenine dimethylase
     0.0019   17.5   0.0     0.0028   17.0   0.0    1.2  1  GidB             rRNA small subunit methyltransferase G
     0.0022   17.4   0.0     0.0029   17.0   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0026   16.9   0.0     0.0034   16.5   0.0    1.2  1  Fibrillarin      Fibrillarin
     0.0028   17.5   0.0      0.021   14.7   0.0    2.0  1  Methyltransf_8   Hypothetical methyltransferase
      0.003   17.5   0.0     0.0049   16.9   0.0    1.3  1  ADH_zinc_N       Zinc-binding dehydrogenase
     0.0038   17.4   0.0      0.011   15.8   0.0    1.8  1  FtsJ             FtsJ-like methyltransferase
     0.0038   17.0   0.0     0.0067   16.2   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
  ------ inclusion threshold ------
       0.01   16.8   0.0       0.06   14.4   0.0    2.0  2  Methyltransf_24  Methyltransferase domain
       0.01   14.8   0.0      0.013   14.5   0.0    1.1  1  Methyltransf_9   Protein of unknown function (DUF1698)
      0.011   15.7   0.0      0.018   14.9   0.0    1.4  1  Methyltransf_18  Methyltransferase domain
      0.015   15.1   0.0      0.022   14.6   0.0    1.3  1  Glycos_transf_2  Glycosyl transferase family 2
      0.016   14.5   0.1      0.099   11.9   0.1    1.9  1  Methyltransf_2   O-methyltransferase domain
      0.017   14.8   0.0      0.025   14.3   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
      0.018   14.7   0.0      0.039   13.6   0.0    1.5  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
      0.023   14.1   0.0      0.031   13.7   0.0    1.2  1  TehB             Tellurite resistance protein TehB
      0.027   14.0   0.0      0.041   13.4   0.0    1.2  1  DUF1188          Protein of unknown function (DUF1188)
      0.082   14.0   0.0        1.5    9.9   0.0    2.1  2  ADH_zinc_N_2     Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   5.2e-17   2.9e-14       1      97 []      74     169 ..      74     169 .. 0.88
   2 !    8.0   0.0    0.0081       4.5      12      60 ..     158     210 ..     156     225 .. 0.74

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 5.2e-17
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS.SSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeeglnvefvqgdaedlp.fedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      v d+G+GtG +++++a+ +g +++v+++D  ++m+++ ++ra++e+ln  +v+++ ++ p +e++s+Dl++ ++++hh+++++   +lk +a++
       CCG92490.1  74 VADIGAGTGYFAIKFARVVGpQGRVIALDRESSMVRYLKKRAKKESLNNLIVRKSPKNNPgLEKQSVDLIFFCNSYHHIHNPN---YLKALAKA 164
                      78****************966**************************7777777777766589*********999****9876...77777888 PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      Lk++G
       CCG92490.1 165 LKKNG 169
                      88777 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0081
                      HHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCGBSS CS
  Methyltransf_25  12 tlalakrl.gkakvtgvDiseemleaareraeeegl...nvefvqgdaedlpf 60 
                      ++alak+l +++kv  +Di +++ +   + a+ ++    +++ v++d+++  f
       CCG92490.1 158 LKALAKALkKNGKVAVIDIKPNAPRLFPATARFKRHiklSAQAVVADFKQAGF 210
                      67899999559************988665554433334588899999988766 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   5.9e-18   3.3e-15       3     122 ..      70     194 ..      68     217 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 5.9e-18
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkilee 96 
                       g +v D+G+GtG++++++a+ +gp+++v+ +D++  ++++ +++a+k  l+n+ +++++ ++    le++++Dli+  +   +  +++++l+ 
       CCG92490.1  70 PGQTVADIGAGTGYFAIKFARVVGPQGRVIALDRESSMVRYLKKRAKKESLNNLIVRKSPKNNPG--LEKQSVDLIFFCNSY-HHIHNPNYLKA 160
                      67899*******************************************************99955..6789****9985555.55566789*** PP

  Methyltransf_31  97 iervlkpggilliedpr........llaelpakv 122
                      + ++lk++g +++ d++        + a++++++
       CCG92490.1 161 LAKALKKNGKVAVIDIKpnaprlfpATARFKRHI 194
                      ***************9966555555444444444 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   5.3e-15     3e-12      65     169 ..      62     171 ..      57     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 5.3e-15
                 HHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES-GGGTTGGG-SEEEEEESSBBSS-..-...HH CS
        PCMT  65 alellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDGrkGyeekaPYdaihvgaaapei..P...ea 158
                 +++ l+lk+g+ v ++G+G+Gy +  +ar+vg++grv++++r  ++v+  k++ kk+ l+n+iv+ +  ++   ek   d i++  + ++i  P   +a
  CCG92490.1  62 VIQALQLKPGQTVADIGAGTGYFAIKFARVVGPQGRVIALDRESSMVRYLKKRAKKESLNNLIVRKSPKNNPGLEKQSVDLIFFCNSYHHIhnPnylKA 160
                 6899************************************************************99866554444445788887776655522222246 PP

                 HHHTEEEEEEE CS
        PCMT 159 lidQLkeGGrl 169
                 l + Lk+ G++
  CCG92490.1 161 LAKALKKNGKV 171
                 66666666665 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   1.9e-14   1.1e-11       2      95 ..      76     172 ..      75     173 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 1.9e-14
                      EET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      d+G+GtG++a ++a+ +   +rv+++D    m+++ k++a++e l ++ ++++   +  +e++s+Dl++  ++ hh+++   +lk +a+ Lk++
       CCG92490.1  76 DIGAGTGYFAIKFARVVgpqGRVIALDRESSMVRYLKKRAKKESLnNLIVRKSPKNNPGLEKQSVDLIFFCNSYHHIHN-PNYLKALAKALKKN 168
                      9*************8878999***********************976566666666667******************85.579*********** PP

                      EEEE CS
  Methyltransf_11  92 Gllv 95 
                      G+++
       CCG92490.1 169 GKVA 172
                      *987 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   7.2e-13     4e-10       2      98 ..      76     170 ..      75     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 7.2e-13
  Methyltransf_12   2 eiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      +iG+GtG ++  +++   p+ +++++D  +s++ +  +k ak+e +nn  v+   ++   l++ +s+Dl++ +n  hh+ ++  +l+ ++k+Lk
       CCG92490.1  76 DIGAGTGYFAIKFARVVgPQGRVIALDRESSMV-RYLKKRAKKESLNNLIVRKSPKNNPGLEK-QSVDLIFFCNSYHHIHNP-NYLKALAKALK 166
                      8**************99****************.66666666666677777777777565555.5*************9555.69********* PP

  Methyltransf_12  95 pgGr 98 
                      ++G+
       CCG92490.1 167 KNGK 170
                      ***8 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   1.9e-12     1e-09      33     164 ..      54     185 ..      50     212 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 1.9e-12
                      HHHHH..HHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES CS
  Ubie_methyltran  33 rlWkk..fveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsf 124
                      ++W+k   v++    k+g++v D+ +Gtg +a+k+++ vg +g+v+ lD +++m++  +k++k+e+  n+   ++  ++   e++s D++    
       CCG92490.1  54 DKWQKpqAVIQALQLKPGQTVADIGAGTGYFAIKFARVVGPQGRVIALDRESSMVRYLKKRAKKESLNNLIVRKSPKNNPGLEKQSVDLIFFCN 147
                      679887788999999*****************************************************9998888888888999****998776 PP

                      -GGG-S-HHHHHHHHHHHEEEEEEEEEEEE----SHHHHH CS
  Ubie_methyltran 125 GlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsq 164
                          +   ++ Lk + + lk  G++ v+++ k++ p l  
       CCG92490.1 148 SYHHIH-NPNYLKALAKALKKNGKVAVIDI-KPNAPRLFP 185
                      666554.456677778889********997.455555544 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   6.3e-11   3.5e-08      10     163 ..      60     213 ..      44     215 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 6.3e-11
  Methyltransf_23  10 sdklerllpklraggrvLdiGcGtGillevlren.gf..svtgvDlspeaveiae..............kakkaqkdqfdeqeaaepqg..... 81 
                      ++ ++ l   l++g+ v diG+GtG+++  +++  g    v++ D  + +v  ++              k                p++     
       CCG92490.1  60 QAVIQALQ--LKPGQTVADIGAGTGYFAIKFARVvGPqgRVIALDRESSMVRYLKkrakkeslnnlivrK---------------SPKNnpgle 136
                      44444443..89999****************77646778999****999999886444433332222221...............222235555 PP

  Methyltransf_23  82 ..kfdlIvlrevlehvpdppellrqiatllkpgGylllseplaslkedrllldwlylvpagrhisffsarslkelleeaGlevv 163
                        + dlI   ++ +h+++ p +l+ +a+ lk +G + + ++     + rl+   ++ + + rhi++ sa+++  ++++aG++++
       CCG92490.1 137 kqSVDLIFFCNSYHHIHN-PNYLKALAKALKKNGKVAVIDIKP--NAPRLFPA-TA-RFK-RHIKL-SAQAVVADFKQAGFSLD 213
                      56****************.89*******************954..46677775.33.434.79976.55999999999999876 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   3.4e-09   1.9e-06      97     154 ..      67     125 ..      54     174 .. 0.80
   2 ?   -0.6   0.0       1.6   9.1e+02     121     143 ..     165     187 ..     157     207 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 3.4e-09
                 T--TT-EEEETT-TTTCCHHHCCHH.TTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEE CS
      Met_10  97 lveegevVvdvfAGiGpfaipiaky.skakrvlaidlnPesvkylkeniklNkvekvvk 154
                 + ++g++V d+ AG G+fai  a+  + + rv+a d + + v+ylk+  k   +++ + 
  CCG92490.1  67 QLKPGQTVADIGAGTGYFAIKFARVvGPQGRVIALDRESSMVRYLKKRAKKESLNNLIV 125
                 589******************9975267789********************99999885 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.6
                 HTTSSEEEEEES-HHHHHHHHHH CS
      Met_10 121 yskakrvlaidlnPesvkylken 143
                 + k+ +v  id+ P++ +++   
  CCG92490.1 165 LKKNGKVAVIDIKPNAPRLFPAT 187
                 45788899999999998887655 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   5.7e-08   3.2e-05       4     114 ..      73     172 ..      70     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 5.7e-08
                     EEEEET-TTSHHHHHHHHH.STTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS-TTSEEEEEEES-----SGGGGGGSTTSH CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkk.nPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllelledgslekifilFPDPwfKkrhhKrRllqp 97 
                     +v++iG G G f ++ A    P+  +++++ ++++v+++ k+++++ l+Nl + ++      +  le++s++ if++ +       h    + +p
      CCG92490.1  73 TVADIGAGTGYFAIKFARVvGPQGRVIALDRESSMVRYLKKRAKKESLNNLIVRKSPK---NNPGLEKQSVDLIFFCNS------YH---HIHNP 155
                     799**************9637******************************8877664...234578888887776633......23...36677 PP

                     HHHHHHHHHEEEEEEEE CS
  Methyltransf_4  98 ellkelarvLkkgGvle 114
                     + lk+la++Lkk+G + 
      CCG92490.1 156 NYLKALAKALKKNGKVA 172
                     77777777777777765 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   2.4e-08   1.3e-05      22     136 ..      61     172 ..      57     183 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2.4e-08
                 HHHHHCHCCTCSEEEEET-TTSHHHHHHHHHT.TC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTT..TSTTS-EEEEEE---STTTCHCHHHH CS
         MTS  22 lLletlpkelsgkvlDlGcGaGvlgaalakes.peaevtlvdvdarAlesakenleanklevevvasdvle..eveekkfdlivsNPPfhagkatelav 117
                   +++l+ +  ++v+D+G+G+G+ ++++a+   p+ +v ++d +   ++  k+ ++++ l+  +v ++  +   +e++++dli     +h+ ++     
  CCG92490.1  61 AVIQALQLKPGQTVADIGAGTGYFAIKFARVVgPQGRVIALDRESSMVRYLKKRAKKESLNNLIVRKSPKNnpGLEKQSVDLIFFCNSYHHIHN----- 154
                 56899999999*****************997527888***********************9555444444311567899999975545555444..... PP

                 HHHHHHHHHHHEEEEEEEE CS
         MTS 118 aeeliaeAkeaLkegGeLl 136
                   + +++ ++aLk++G+  
  CCG92490.1 155 -PNYLKALAKALKKNGKVA 172
                 .344444455666666655 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.1e-07   6.1e-05      48     167 ..      56     176 ..      34     196 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHH..HHHHHHHHHTS-SSS.-EEEEES-GGG---.--SEEEEES-GGGTSG CS
        CMAS  48 laKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeq..aklakkrvdeldler.kvevklldyedlde.kvdrvvsvgafehvgk 142
                  +K + +++ l+lkpG+t+ diG+G G+ +++ ++  + +   + l +e    ++ kkr +++ l++  v+ + ++   l++  vd +   +   h+ +
  CCG92490.1  56 WQKPQAVIQALQLKPGQTVADIGAGTGYFAIKFARVVGPQGRVIALDRESsmVRYLKKRAKKESLNNlIVRKSPKNNPGLEKqSVDLIFFCNSYHHIHN 154
                 5788999****************************9998877777777751157788888888876523444455666777767898888888888876 PP

                 GGHHHHHHHHHHHS-TT-EEEEEEE CS
        CMAS 143 enydtffkklkkllkedGllllhti 167
                    +++ k+l k+lk++G +++  i
  CCG92490.1 155 ---PNYLKALAKALKKNGKVAVIDI 176
                 ...5578999999999999987666 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.2e-07   0.00012      31      94 ..      61     124 ..      39     146 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.2e-07
       GCD14  31 liimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlv 94 
                  +i+ L+lkpG  v + G+G+g ++ ++ar v+P+G++ +++   + ++  ++  +++ l++l+
  CCG92490.1  61 AVIQALQLKPGQTVADIGAGTGYFAIKFARVVGPQGRVIALDRESSMVRYLKKRAKKESLNNLI 124
                 47899***********************************998888777777777777776654 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   8.6e-06    0.0048      44     148 ..      67     166 ..      57     175 .. 0.68
   2 ?    3.0   0.0     0.087        49      64      87 ..     160     183 ..     152     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.6e-06
                     HHHT--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHHHHHHTSSS---EEEEEE-S-GG..GH CS
  Methyltransf_3  44 klvnakrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekieliegdalkvLeelvkdkklpefDfifvDaDks..sy 136
                     +l   + v +iG  tGy ++  a  + + G+++a+d +   +   +k  +k ++++ i  +  +  + Le+   +    + D+if     +    
      CCG92490.1  67 QLKPGQTVADIGAGTGYFAIKFARVVGPQGRVIALDRESSMVRYLKKRAKKESLNNLIVRKSPKNNPGLEK---Q----SVDLIFFCNSYHhiHN 154
                     5666778999**************************99998888888877777777665555445555543...3....3566665432220133 PP

                     HHHHHHHHHTEE CS
  Methyltransf_3 137 vnyyeklleLvk 148
                     +ny + l + +k
      CCG92490.1 155 PNYLKALAKALK 166
                     455555555444 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.087
                     HHHTTS-TT-EEEEEES-HHHHHH CS
  Methyltransf_3  64 atalalPeDGkilaididreayei 87 
                     a+a al ++Gk+  idi ++a  +
      CCG92490.1 160 ALAKALKKNGKVAVIDIKPNAPRL 183
                     68999*************998654 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.7e-06   0.00097      22      80 ..      67     122 ..      59     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.7e-06
  Methyltransf_32  22 kesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnk 80 
                      + ++ +tv+D+GaG gY +   a   +  + +v+++d ++++v+  +kra+k    +n+
       CCG92490.1  67 QLKPGQTVADIGAGTGYFAIKFAR-VVGPQGRVIALDRESSMVRYLKKRAKKES--LNN 122
                      456789***********9999998.56799*******************99876..554 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.8e-06    0.0027      21      75 ..      61     118 ..      58     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.8e-06
                 HHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHHCHTTTC CS
      RrnaAD  21 eIldklnleekltvleigpGkGilTeeLakra...kqvvvlElderLakllqkklskd 75 
                  ++++l+l++ +tv +ig+G+G +  ++a  +     v +l   ++++  l+k+ +k+
  CCG92490.1  61 AVIQALQLKPGQTVADIGAGTGYFAIKFARVVgpqGRVIALDRESSMVRYLKKRAKKE 118
                 68999***************************9988999**************88744 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.9e-06    0.0028      46     120 ..      69     144 ..      60     178 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.9e-06
                 -CCC-.EEEETSTTTTTHHHHH.HH-TTSEEEEEES-HHHHHHHHHHHHHCT-SSEEEEES-CCC.TTTTT-EEEEE CS
        GidB  46 kekrdkviDvGsGaGlPGipLa.iarpelkltLleslekkiaFLeevkeelklenveivearaee.kqeeekydvvt 120
                 k  + +v+D+G+G G  +i  a ++ p+ +++ l++++  +++L++  ++  l+n+ + ++  ++   e++++d++ 
  CCG92490.1  69 KPGQ-TVADIGAGTGYFAIKFArVVGPQGRVIALDRESSMVRYLKKRAKKESLNNLIVRKSPKNNpGLEKQSVDLIF 144
                 3444.5*************9986789************************999988555444444555666667665 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   5.3e-06    0.0029     159     234 ..      68     148 ..      60     176 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.3e-06
        PrmA 159 vkegeevlDvGtGSGiLaiaaakL.gak.kvvavDiDevAvkvakeNaelNkveaklevalseell..keekadviv.aNI 234
                 +k+g++v D+G+G+G  ai  a++ g + +v+a+D ++  v+  k+ a++ ++++ +  + +++ +  +++++d+i+ +N 
  CCG92490.1  68 LKPGQTVADIGAGTGYFAIKFARVvGPQgRVIALDRESSMVRYLKKRAKKESLNNLIVRKSPKNNPglEKQSVDLIFfCNS 148
                 7899***************87665254438************************988445666666445789999853665 PP

>> Fibrillarin  Fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.1e-06    0.0034      63     145 ..      63     144 ..      51     204 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.1e-06
                  -S--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS-.-EEEEE CS
  Fibrillarin  63 lkelpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralve.kvDvif 145
                  ++ l++k+g+ v  +Ga++G  +   + +vg++g+v a++  + ++r l + akk +    i+   + P++   l + +vD+if
   CCG92490.1  63 IQALQLKPGQTVADIGAGTGYFAIKFARVVGPQGRVIALDRESSMVRYLKKRAKKESLNNLIVR--KSPKNNPGLEKqSVDLIF 144
                  67889********************************************998887542222332..334444333322566654 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.8e-05     0.021      54     162 ..      55     179 ..      22     216 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.8e-05
                     TSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHH....HH--S-..EEEEE..........SS-SSTTEEES-TTS-S.....--TT-EEEEEEE CS
  Methyltransf_8  54 kWPenPldviirklkkkkdnlvvadlGcGeakia....eavrekekvrsfd..........lvavnervvacdlakvP.....ledesvdvavfc 129
                     kW ++P + +i+ l+ k+++ +vad+G G    a      v+ + +v+++d            a +e +    ++k P     le +svd++ fc
      CCG92490.1  55 KW-QKP-QAVIQALQLKPGQ-TVADIGAGTGYFAikfaRVVGPQGRVIALDressmvrylkKRAKKESLNNLIVRKSPknnpgLEKQSVDLIFFC 146
                     44.445.5789999999987.579**9998655433225556666777777222221110033344444444445555333357899******** PP

                     S---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG CS
  Methyltransf_8 130 lslmgtnladflkeanrvlkvGGllkvaevksr 162
                      s       ++lk   + lk+ G + v ++k  
      CCG92490.1 147 NSYHHIHNPNYLKALAKALKKNGKVAVIDIKPN 179
                     ***************************999854 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   8.7e-06    0.0049       1     105 [.      80     192 ..      80     209 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8.7e-06
                 HHHHHHHHHHHHTT-..EEEEEESSHHHHHHHHHTTESEEEET.......TTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECS CS
  ADH_zinc_N   1 gvGlaavqlAkalGa..eviavdsseeklelakklGadeviny.......kea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvG 89 
                 g G +a+++A+  G   +via d+ ++ ++++kk   +e +n+       k+   l+++  +l     +  ++ ++ ++  l+a  k+lk++G+++v+ 
  CCG92490.1  80 GTGYFAIKFARVVGPqgRVIALDRESSMVRYLKKRAKKESLNNlivrkspKNNpGLEKQSVDLI---FFCNSYHHIHNPNYLKALAKALKKNGKVAVID 175
                 789********************************99999999676544444444444444444...4444555566999*****************99 PP

                 CTSSEEE.EEHHHHHHT CS
  ADH_zinc_N  90 ggkgeee.fdlrnlllk 105
                 +  +    f++   +++
  CCG92490.1 176 IKPNAPRlFPATARFKR 192
                 84444433555554444 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     2e-05     0.011      13      68 ..      63     122 ..      55     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2e-05
                 HHHHT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS.....HHHTTEEEECS CS
        FtsJ  13 dekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.....aplpgvttiqg 68 
                  ++ + +kpg+tv D+ga++G ++   ++ +g++g+v+a+D  +      +++ + ++++ 
  CCG92490.1  63 IQALQ-LKPGQTVADIGAGTGYFAIKFARVVGPQGRVIALDRESSmvrylKKRAKKESLNN 122
                 55666.89************************9********95443665544444444444 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.2e-05    0.0067       8     128 ..      54     166 ..      47     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.2e-05
      DUF938   8 ernrepilevLksylakttervLEiasGtGqHAvffApal.pnlkwqpsdqdeelresiaawadelalsnlkpPleldvtaevapvereappapasida 105
                 ++ ++p + +   +l+  ++ v +i++GtG  A+ fA  + p+ + ++ d ++++   +++ a++ +l+nl       v ++  p +++  ++++s+d+
  CCG92490.1  54 DKWQKPQAVIQALQLKPGQT-VADIGAGTGYFAIKFARVVgPQGRVIALDRESSMVRYLKKRAKKESLNNLI------VRKS--PKNNP-GLEKQSVDL 142
                 55555544444446666676.****************998577899*******9999999999999999973......2333..33322.357889999 PP

      DUF938 106 ilsinll.Hispwsaveglfagag 128
                 i+  n   Hi   +  ++l ++++
  CCG92490.1 143 IFFCNSYhHIHNPNYLKALAKALK 166
                 988886525777777777666654 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   0.00011      0.06       3     103 ..      77     173 ..      75     176 .. 0.85
   2 ?    4.1   0.0      0.16        92      13      65 ..     160     212 ..     152     219 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 0.00011
  Methyltransf_24   3 iGvysGvstlwllralrrngagrlvavdhdpgaeeaaalareaglddrvrlikadseealaslaagsiDllfiDgghaaeavledleallprla 96 
                      iG+  G+ ++ ++r +   g  r++a+d +   + ++ l ++a+ ++  +li+ +s++  ++l+++s+Dl+f+  +  + +  ++l+al + l+
       CCG92490.1  77 IGAGTGYFAIKFARVVGPQG--RVIALDRES--SMVRYLKKRAKKESLNNLIVRKSPKNNPGLEKQSVDLIFFCNSYHHIHNPNYLKALAKALK 166
                      89889999999999999998..6********..4555555559999999*********************998777777888889999999999 PP

  Methyltransf_24  97 pggvvlf 103
                      ++g v +
       CCG92490.1 167 KNGKVAV 173
                      9997765 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.16
  Methyltransf_24  13 wllralrrngagrlvavdhdpgaee...aaalareaglddrvrlikadseealasl 65 
                      +l++al++ng+  + ++d +p a +   a+a +++ +++  ++ ++ad+++a  sl
       CCG92490.1 160 ALAKALKKNGK--VAVIDIKPNAPRlfpATARFKR-HIKLSAQAVVADFKQAGFSL 212
                      68999999996..7777777732222222222222.33444555566666555555 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.3e-05     0.013     100     215 ..      52     171 ..      34     203 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.3e-05
                     HHHHHHHHGGGS.--T...T-EEEEET-TTSHHHH...HHHHCT-S.EEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T---EEEEE CS
  Methyltransf_9 100 sdwkWdrvlphlsdlk...grtildvGcgnGyhlw...rmvgegak.lvvGidPselfliqfeavrkllgedqrahllplgieqlpeleafdtvf 187
                     s  kW++ +  +  l+   g+t++d+G g+Gy+     r+vg + + +++  + s + +++ +a ++ l ++  + + p     l+  ++ d +f
      CCG92490.1  52 SRDKWQKPQAVIQALQlkpGQTVADIGAGTGYFAIkfaRVVGPQGRvIALDRESSMVRYLKKRAKKESL-NNLIVRKSPKNNPGLE-KQSVDLIF 144
                     455888877777776644589***********9752236666544303444445555566666655555.4555555665555554.47899999 PP

                     EES-GGG-S-HHHHHHHHHCTEEEEEEE CS
  Methyltransf_9 188 smGvlyhrrsPldhllqlkdqlvkgGel 215
                          +h + P + l +l ++l+k+G++
      CCG92490.1 145 FCNSYHHIHNP-NYLKALAKALKKNGKV 171
                     88876666666.8999999999999987 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   3.3e-05     0.018      12      68 ..      68     125 ..      60     146 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.3e-05
  Methyltransf_18  12 vekgsrvaDiGtDHgylpiylvk.egkakkviasDinegplekakeniekagledkie 68 
                      +++g++vaDiG+  gy +i+ ++  g   +via D +++ ++  k+ ++k++l++ i 
       CCG92490.1  68 LKPGQTVADIGAGTGYFAIKFARvVGPQGRVIALDRESSMVRYLKKRAKKESLNNLIV 125
                      57899***************997257889*********************99987554 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.9e-05     0.022      30     118 ..      97     179 ..      93     230 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.9e-05
                      EEEEEEES-SSCHHHHHGGGCH..C-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEES.SEEE-TTHHHHHHHHHHH.TTCEEEEEEEE CS
  Glycos_transf_2  30 eiivvDDgStDetveileelak..edprvrvirreenvGkagalnaglraatgdyilflDa.Ddepdpdwleklvealekdgadvvlgqrpr 118
                      ++i +D  S  + v  l++ ak  +  +++v + ++n       n gl++ + d+i+f+++ +++++p++l+ l++al+k+g+ +v+   p 
       CCG92490.1  97 RVIALDRES--SMVRYLKKRAKkeSLNNLIVRKSPKN-------NPGLEKQSVDLIFFCNSyHHIHNPNYLKALAKALKKNGKVAVIDIKPN 179
                      677888888..88888888888777777778888888.......9999999***99999998********************9777765444 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00018     0.099      52     167 ..      60     176 ..      35     199 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
                     HHHHHSS-GGG-SEEEEET-TTSHHHHHHHHH-.TT-EEEEEE-.HHHHHHHHHHS-----TTEEEEES-TTTS---..--SEEEEESSGGGS-H CS
  Methyltransf_2  52 kkvleafdleglkslvDvGGGtGalakaivsay.PtikvivfDl.peVveaAkehlsageeervefvgGdffkdslP..eaDaillkrvlhDwsd 142
                     + v++a +l++ +++ D+G GtG +a + ++   P+ +vi +D  ++ v+  k++ + +  +++ + +     ++ P  e   + l   +  + +
      CCG92490.1  60 QAVIQALQLKPGQTVADIGAGTGYFAIKFARVVgPQGRVIALDReSSMVRYLKKRAKKESLNNLIVRKSP---KNNPglEKQSVDLIFFCNSYHH 151
                     67999999***************99877776544999*****9724577777877433333333333332...3344224455555556667778 PP

                     HHHHHHHHHHHHH--TT-EEEEEE- CS
  Methyltransf_2 143 ekcvklLkrvkkalpagGkvivvea 167
                      +  + Lk + kal+++Gkv v++ 
      CCG92490.1 152 IHNPNYLKALAKALKKNGKVAVIDI 176
                     888899**************99986 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.5e-05     0.025      47     152 ..      71     170 ..      54     180 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.5e-05
  Methyltransf_16  47 klsvlELGsGtGlvGlavaell.peakviltDlee.llellkknielnknalkskvkvevLdWgeeleedllekeevDlilaaDcvYledslel 138
                      +++v ++G+GtG + + +a+ + p+ +vi  D+e  ++  lkk  +   + l++ ++ +  +      +  lek++vDli      Y +   + 
       CCG92490.1  71 GQTVADIGAGTGYFAIKFARVVgPQGRVIALDRESsMVRYLKKRAKK--ESLNNLIVRKSPKN-----NPGLEKQSVDLIFFCNS-YHHIHNPN 156
                      568999***************88**********98799999999888..45777777665443.....33446777888888764.55555555 PP

  Methyltransf_16 139 LvkvLkellkkesk 152
                       +k L + lkk++k
       CCG92490.1 157 YLKALAKALKKNGK 170
                      55555555555555 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.9e-05     0.039       2      66 ..      64     128 ..      63     145 .. 0.89
   2 ?   -3.0   0.0       8.5   4.7e+03     121     134 ..     158     171 ..     151     180 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.9e-05
                      HHH---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES CS
  Methyltr_RsmB-F   2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivlea 66 
                      ++L++++++t+ D+ a+ G      a ++ ++g+v+A+d++++ ++ +++  k+ +++n+iv + 
       CCG92490.1  64 QALQLKPGQTVADIGAGTGYFAIKFARVVGPQGRVIALDRESSMVRYLKKRAKKESLNNLIVRKS 128
                      6899**********************************************999999999888765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.5
                      HHHHCCCEEEEEEE CS
  Methyltr_RsmB-F 121 lsaaidllkkgGvl 134
                      l+a+++ lkk+G +
       CCG92490.1 158 LKALAKALKKNGKV 171
                      67777777777754 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.6e-05     0.031      22     100 ..      62     144 ..      52     176 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.6e-05
                 HHHHCCCS-S-E.EEEES-TTSHHHH.HHHHTT-E..EEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG----S-.EEEEE CS
        TehB  22 vveavkivkpgk.vldlgcgqgrnsl.ylsllgyd..vtawdknensiafleeikekenlknistalydineaklder.ydfil 100
                 v++a + +kpg+ v d+g g g  ++ +  ++g +  v a+d++++ + +l++ ++ke+l+n+  +    n+  l+++  d+i+
  CCG92490.1  62 VIQALQ-LKPGQtVADIGAGTGYFAIkFARVVGPQgrVIALDRESSMVRYLKKRAKKESLNNLIVRKSPKNNPGLEKQsVDLIF 144
                 666665.68887256*******99873566788644499*************************99999999888876256665 PP

>> DUF1188  Protein of unknown function (DUF1188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.4e-05     0.041      57      94 ..     160     197 ..     156     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.4e-05
                 HHHHHHCCCEEEEEEESSGGGGGGSSSTHHHHHHHHTT CS
     DUF1188  57 aiakkLskkeevtlvDiephlkellekdvefklsleev 94 
                 a+ak+L+k+ +v ++Di+p+  +l ++  +fk +++  
  CCG92490.1 160 ALAKALKKNGKVAVIDIKPNAPRLFPATARFKRHIKLS 197
                 689*****************************999876 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.69   3.9e+02      31      69 ..      80     119 ..      56     132 .. 0.69
   2 ?    9.9   0.0    0.0027       1.5      19      73 ..     136     196 ..     124     211 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.69
                   HHHHH.HHHHHHE.EEEEEEEE--.--.S-EEE-CHHHCTT CS
  ADH_zinc_N_2  31 ggealleaslkvl.pggGrlvsig.gpplsaallkpakkrk 69 
                   g+ +++ +  +v+ p+ Gr++ +  ++++ + l k+akk++
    CCG92490.1  80 GTGYFAIKFARVVgPQ-GRVIALDrESSMVRYLKKRAKKES 119
                   4666777888999555.***999955556666666665443 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0027
                   -TT-EEEEEES-H.....HHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EE CS
  ADH_zinc_N_2  19 ggegvDvvldtvg.....gealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsv 73 
                   ++++vD+++ +       ++++l+a+ k+l+++G++ +i  +p +++  ++ a++++  ++
    CCG92490.1 136 EKQSVDLIFFCNSyhhihNPNYLKALAKALKKNGKVAVIDiKPNAPRLFPATARFKRHIKL 196
                   56789999999888999999999*******999***9998777677777777666644444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 1670.67
//
Query:       CCG92491.1  [L=247]
Description: Dihydrodipicolinate reductase 2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-35  121.5   0.0    2.7e-35  121.0   0.0    1.2  1  DapB_C          Dihydrodipicolinate reductase, C-terminus
    1.8e-25   89.5   0.1    1.6e-24   86.4   0.1    2.2  1  DapB_N          Dihydrodipicolinate reductase, N-terminus
  ------ inclusion threshold ------
       0.13   12.1   0.0       0.19   11.6   0.0    1.3  1  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> DapB_C  Dihydrodipicolinate reductase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.0   0.0   4.6e-39   2.7e-35       1     121 []     112     241 ..     112     241 .. 0.93

  Alignments for each domain:
  == domain 1  score: 121.0 bits;  conditional E-value: 4.6e-39
                 HHHHHHHHHHHHCCCSTTT-EEEEEEEESTT--SSS-HHHHHHHHHHH...............-S-ETTCCCEEEETTT--CCCCEEEECTTEEEEEEE CS
      DapB_C   1 GvnlllklveeaakllkeaydveiiEkHhnkKaDaPSGTAlalaeaia..egke.........arkkkeigihsvRgggvvgehevlfagegevieikh 88 
                 Gvnll  +v++a+ +l ++yd  ii++Hhn+K+DaPSGTA++l+e +   e  +         + ++k  ++hs+R+g+vvg h+vl++g gevie++h
  CCG92491.1 112 GVNLLELMVHTATVVLGKSYDKAIIDIHHNTKLDAPSGTAKRLLEVLMaaE--KiieeaskdfSSQEKLPQVHSIRAGTVVGVHTVLYCGPGEVIELTH 208
                 9*********************************************99551..34455556777777899***************************** PP

                 EEESCHHHHHHHHHHHHHH.HCTSSEESHHHHH CS
      DapB_C  89 ealsreiFaeGallaaewlakkkkglysmedvL 121
                 +a++r  Fa+G l+aa+w+++k++ +ysm+dvL
  CCG92491.1 209 RAENRFPFAHGSLKAAKWIVGKPPAIYSMRDVL 241
                 ********************************8 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.1   2.6e-28   1.6e-24       2     124 .]       9     109 ..       8     109 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 2.6e-28
                 EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSSHHHHHHH.-SEEEE-S-HHHHHHHHHHHHHTT-EEEE--S CS
      DapB_N   2 kvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevlek.advliDFTtpeavlenlklalekgvklViGTT 99 
                 +++++Ga+G+mG++vv+a+  ++++++v+ +d+++                       +lee+++  ad++iDF++++ + e++++al++  +lViGTT
  CCG92491.1   9 RILLTGAQGKMGQTVVQAAALDPEVKIVGLIDKED-----------------------RLEEAFKIaADCIIDFSVHHFSQELVEAALSHSLPLVIGTT 84 
                 89*******************************75.......................899999888******************************** PP

                 S--HHHHHHHHHHTTTSEEEE-S-- CS
      DapB_N 100 GlseeelaeleelakkigvviapNf 124
                 G ++eel++++e+++ki++v++pNf
  CCG92491.1  85 GHTPEELERIKEASQKIPIVMSPNF 109
                 ************************9 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.1e-05      0.19       1      71 [.      14      87 ..      14     119 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.1e-05
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT..-CCHHHHHHTT-S.EEEES---T CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvt..dvedlaealkgad.aVvsalggg 71
                    GA Gk G+ +v+ ++ + +++++ l+ ++++l+e  + ++  +++ +v+  ++e +++al++    V+ ++g++
      CCG92491.1 14 GAQGKMGQTVVQAAALDPEVKIVGLIDKEDRLEEAFKIAADCIIDFSVHhfSQELVEAALSHSLpLVIGTTGHT 87
                    9***********999999**************987766666788888862245556666655433455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1760.27
//
Query:       CCG92492.1  [L=301]
Description: Dihydrodipicolinate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-97  324.5   0.0    4.2e-97  324.3   0.0    1.0  1  DHDPS      Dihydrodipicolinate synthetase family
  ------ inclusion threshold ------
       0.18   11.4   0.2       0.39   10.3   0.2    1.6  1  Shal-type  Shal-type voltage-gated potassium channels, N-term


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.3   0.0  4.7e-101   4.2e-97       2     287 ..       3     287 ..       2     289 .. 0.99

  Alignments for each domain:
  == domain 1  score: 324.3 bits;  conditional E-value: 4.7e-101
                 -SEEEEE----B-TTSSB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE---SSHHHHHHHHHCCCCCT-SEE CS
       DHDPS   2 fsgiitalvtpfdedgkldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakgripviagvGsnstseaiklakkaeeaGadgv 100
                 ++g  ta+++pf+ +g++d++al++l e++i++ +dg+v +GttGEs+tls ee+++lv+ ++e+++ ri+++ag+Gsnst+eai+l+k+ae+ G+dgv
  CCG92492.1   3 IQGTYTAIISPFH-NGQIDRKALERLLEHQIENRIDGIVPVGTTGESPTLSYEEHIELVRLTAEIVEKRIKIFAGTGSNSTAEAIHLTKEAEKIGVDGV 100
                 67899*******8.59*********************************************************************************** PP

                 EEE---SS---HHHHHHHHHHHHHCHSS-EEEEE-HHHHSHHHHHHHHHHHHT.STTEEEEEE-SS-CTHHHHHHCCCSTTSEEEES-GGGHHHHHHTT CS
       DHDPS 101 lavtPYYnkpsqeglyqhfkaiieatdlpvilYnvpsrtgadlspetvkrLae.lenivgvKeavgdleevikikkevgkdlviysGddelllsalslG 198
                 l+v PYYn+psqegl  hf ai+++t+lp++lYn+psr g+d++++tvkrL+e ++nivg+Kea g++++v ++++    +++i+sGdd+l+l++ls+G
  CCG92492.1 101 LLVSPYYNRPSQEGLFRHFSAIAASTSLPILLYNIPSRCGVDIAVDTVKRLVEkNKNIVGIKEAGGSVDRVSQLVEALPGEFSILSGDDALTLPFLSVG 199
                 ****************************************************99********************************************* PP

                 -SEEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCCCCSCCHHHHHHHHCTTSSSBB.--TTS--S-HHHHHHHHHHHH CS
       DHDPS 199 adGvisvtsniagermrqlikalkeGdlaeaaelnekllplikilfaepnvilvktalellGlvveatlrkPltpleeeekeeleallk 287
                 a Gv+sv+sn+ ++ + +l++++ eG+  ea++l++ l pl+ +l+ e+n+++vktal++ Gl   + lr Pl+pl+ ++ e+l+ +l+
  CCG92492.1 200 AVGVVSVASNLFPRPVSALVRLYLEGKPFEARQLHQTLYPLFRDLMIETNPVPVKTALAMEGLTDLE-LRLPLAPLQPQNLEKLKTTLS 287
                 *******************************************************************.*****************9997 PP

>> Shal-type  Shal-type voltage-gated potassium channels, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   4.4e-05      0.39       7      28 .]     193     214 ..     190     214 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.4e-05
   Shal-type   7 LPFaRAAAIGWvPvArnplPaP 28 
                 LPF  + A+G v vA+n  P+P
  CCG92492.1 193 LPFLSVGAVGVVSVASNLFPRP 214
                 9*******************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2105.16
//
Query:       CCG92493.1  [L=273]
Description: Diaminopimelate epimerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-39  133.9   0.0    7.1e-25   87.5   0.0    2.1  2  DAP_epimerase  Diaminopimelate epimerase


Domain annotation for each model (and alignments):
>> DAP_epimerase  Diaminopimelate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.0     4e-29   7.1e-25       1     115 [.       5     119 ..       5     125 .. 0.90
   2 !   44.7   0.0   7.4e-16   1.3e-11       2     119 ..     142     263 ..     141     265 .. 0.75

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 4e-29
                    EEEECSSEEEEEEECCTTCSSHHHHHHHHHHHTTTTSTT-SEEEEEEEEETTEEEEEEEETTTEEESTTHCCHHHHHHHHHCTTS-..S-SEEEEE CS
  DAP_epimerase   1 fakshGnpndvvvvddveaelvleaelvaalcdreagpgadgvlfvkpsgeediklryfnrdgseaemCGnGvrvfaaylreggle..tkkevtve 94 
                    f+k+ G +nd++++d++++ l l a  +a lcdr++g+gadg+l+v+ +++e +++ yfn+dgs a+ CGnG+r+fa++++e +++   + ++++ 
     CCG92493.1   5 FTKMNGAGNDFILLDNRQGLLSLDASSIAYLCDRHRGIGADGILLVEWAEKEGLRMVYFNADGSRASFCGNGARCFARFAWETEHKnvGCGRLSFL 100
                    89*******************************************************************************988875578999999 PP

                    ETTEEEEEEEECTTSSEEEEE CS
  DAP_epimerase  95 tlgGeleievkddgekvkvdm 115
                    t+ G++e+ v+ +   vk  m
     CCG92493.1 101 TDCGTVEAWVEGER--VKITM 119
                    99998887776665..45544 PP

  == domain 2  score: 44.7 bits;  conditional E-value: 7.4e-16
                    EEECSSEEEEEEECCTTC.SSHHHHHHHHHHHTTTTSTT-SEEEEEEEEETTEEEEE.EEETTTEEESTTHCC.HHHHHHHHHCTTS-S-SEEEEE CS
  DAP_epimerase   2 akshGnpndvvvvddvea.elvleaelvaalcdreagpgadgvlfvkpsgeediklr.yfnrdgseaemCGnG.vrvfaaylreggletkkevtve 94 
                    a+++G+p++v++ d  +  e  l++   +++ ++ ++p++++v+fv ++ge+ ik+r y++++++e+ +CG+G ++ +       g   + ++ v 
     CCG92493.1 142 AIDTGVPHVVLFGDYEKWtEAALQDLGYEIRWHKAFQPEGTNVNFVWKAGEQAIKVRtYERGVEGETLACGSGvTASALISSVILG--MEPPIDVY 235
                    6899****99997754433666778899999999***********************7777889*********9888776666666..35888888 PP

                    ETTEEEEEEEECTTSS...EEEEEE--E CS
  DAP_epimerase  95 tlgGeleievkddgek...vkvdmGkas 119
                    +++Ge+     + +ek    ++  G+a+
     CCG92493.1 236 VRSGERLQVHFRRTEKgfeEVFLEGPAK 263
                    8888765433333333455555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1878.04
//
Query:       CCG92494.1  [L=223]
Description: imidazole glycerol phosphate synthetase,glutamine amidotransferase subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-19   68.6   0.0    7.2e-19   68.3   0.0    1.1  1  GATase         Glutamine amidotransferase class-I
    0.00042   20.0   0.0    0.00062   19.4   0.0    1.2  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
     0.0066   16.2   0.0      0.099   12.4   0.0    2.1  2  Peptidase_C26  Peptidase C26
  ------ inclusion threshold ------
      0.087   12.7   0.0          2    8.2   0.0    2.3  1  SNO            SNO glutamine amidotransferase family


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   1.6e-22   7.2e-19       2     189 ..      17     213 ..      16     214 .. 0.86

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 1.6e-22
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.......TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTT... CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.......vegkieaikearenkiPiLGICLGmQllaiefgr... 90 
                 +iD++ ++ +++++a+ +l +kve +    + ++      n+   +v +G+g+ g       ++g + ++++ +++++P+LGICLG Qll++e+ +   
  CCG92494.1  17 IIDYGMGNLQSVEKAFESLSCKVERLFSP-P-NHY-----NF-LAIVLPGVGAFGdgikgleAKGFLPFLENWISKDLPFLGICLGYQLLFEESLEskg 107
                 699**************999998877644.2.222.....34.4567789999999999999********************************99999 PP

                 .........EEE.....EEECEEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTT CS
      GATase  91 .........kvv.....kekekehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEsts 175
                          kvv     kek  +h g+++    +++a l g ++  + ++ H+y  +     +++++ + ++     ++ +i + n + ++QFHPE+++
  CCG92494.1 108 akgigifkgKVVrfpesKEK-VPHIGWNSVEVLKKSAYLDGISSGDYFYFVHSYYPEV---IQKEIILLQTTYCV-PFASAIARGN-LLATQFHPEKSH 200
                 99998888877799996777.9***********999*******************776...99998887777443.6667777776.**********99 PP

                 STTHHHHHHHHHHH CS
      GATase 176 tpegpellfnflik 189
                 +++  +ll+nfli+
  CCG92494.1 201 KKG-IQLLKNFLIH 213
                 987.99****9986 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.4e-07   0.00062      42     115 ..      52     118 ..      28     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.4e-07
    GATase_3  42 dlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpegvegeageveglglLdiet 115
                  +++lpG     + ++ l+++g+   ++++++++ p lgiC G+q+L ee  +++g        +g+g+++ ++
  CCG92494.1  52 LAIVLPGVGAFGDGIKGLEAKGFLPFLENWISKDLPFLGICLGYQLLFEESLESKGA-------KGIGIFKGKV 118
                 47899999999999999********************************99888765.......8888887766 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.2e-05     0.099      96     118 ..      76      98 ..      73     102 .. 0.91
   2 ?    1.5   0.0     0.048   2.1e+02     205     216 .]     186     197 ..     178     197 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.2e-05
  Peptidase_C26  96 aLiraalergvPilgiCrGlqll 118
                    + +++ +++++P lgiC+G+qll
     CCG92494.1  76 PFLENWISKDLPFLGICLGYQLL 98 
                    6788999**************98 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.048
  Peptidase_C26 205 kafvlgvQwHPE 216
                    +  +l+ Q+HPE
     CCG92494.1 186 RGNLLATQFHPE 197
                    45789******9 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00045         2     156     179 ..     183     207 ..      41     216 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00045
                 EEEETTEEEESS-GGGSTT.HCHHH CS
         SNO 156 vakqkkilatsfhPelaed.dirvh 179
                 +++++++lat fhPe + + +i++ 
  CCG92494.1 183 AIARGNLLATQFHPEKSHKkGIQLL 207
                 4568899999999998864145554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1622.24
//
Query:       CCG92495.1  [L=239]
Description: phosphoribosylformimino-5-aminoimidazole carboxamide isomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-70  236.6   0.1    2.7e-70  236.4   0.1    1.0  1  His_biosynth  Histidine biosynthesis protein
    4.8e-06   25.8   0.0    7.6e-06   25.2   0.0    1.3  1  FMN_dh        FMN-dependent dehydrogenase
    8.6e-06   25.4   0.0    0.00061   19.3   0.0    2.1  2  NMO           Nitronate monooxygenase
    3.8e-05   22.7   0.0    0.00056   18.8   0.0    2.3  2  Trp_syntA     Tryptophan synthase alpha chain
    0.00047   19.2   0.0     0.0012   17.9   0.0    1.6  2  IMPDH         IMP dehydrogenase / GMP reductase domain
    0.00056   19.1   0.0       0.31   10.1   0.0    2.3  2  Dus           Dihydrouridine synthase (Dus)
    0.00095   18.5   0.1        1.2    8.5   0.0    2.5  3  TMP-TENI      Thiamine monophosphate synthase
     0.0011   18.2   0.1     0.0044   16.3   0.0    1.8  2  DHO_dh        Dihydroorotate dehydrogenase
     0.0025   17.3   0.1      0.012   15.0   0.0    1.9  2  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
     0.0038   16.4   0.0       0.21   10.8   0.0    2.4  2  IGPS          Indole-3-glycerol phosphate synthase
     0.0079   15.4   0.0      0.012   14.8   0.0    1.2  1  Glu_synthase  Conserved region in glutamate synthase
  ------ inclusion threshold ------
      0.029   14.3   0.0       0.15   12.0   0.0    2.2  3  TnpB_IS66     IS66 Orf2 like protein
       0.12   11.8   0.3       0.23   10.9   0.1    1.7  2  PcrB          PcrB family


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.4   0.1   1.9e-73   2.7e-70       2     228 ..       3     229 ..       2     230 .. 0.99

  Alignments for each domain:
  == domain 1  score: 236.4 bits;  conditional E-value: 1.9e-73
                   EEEEEEEETTEEEEECTTCSTCEEEETTSHHHHHHHHHHHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SE CS
  His_biosynth   2 iipalDlkdGkvVrlvkGdrfqelryagdpvelakryeeegadelhvvDldaakegreanldlveeiaeevfipvqvGGGIrsledveelleagadk 98 
                   i+ a+Dl +G+vVrl++G+ +  ++y+ dp+++a+ +e++gad lh+vDl++a+eg++++l+++e+ia+++++p+q GGG r+ edv +++e+ga++
    CCG92495.1   3 IYAAIDLYKGQVVRLRQGKLEALTVYSSDPLQTAQLWEDQGADGLHIVDLEGAFEGKPKQLSVLEKIAQQTHLPIQYGGGLRTEEDVFKAIENGAQR 99 
                   99*********************************************************************************************** PP

                   EEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEECEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---HHHHHHHHHHHSSEEE CS
  His_biosynth  99 viigtaavknpelikelaekfgsqkivvaiDarrgykvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdleltkelaeavkipvi 195
                   v+ig+  +++p+++++++ ++gs++iv+aiDa++g +++++gw++e+++ ++ ++k le+ gag +l+t++ +dGtl+Gpd++ tk+l e+  +pv 
    CCG92495.1 100 VVIGSRLLTDPSFLEKISGAVGSERIVAAIDAKDG-QILMEGWTKESTYRMETFVKILEKSGAGFLLYTNVLTDGTLEGPDIQGTKKLVENSALPVF 195
                   ***********************************.************************************************************* PP

                   EESS--SHHHHHHHH.HTTCSEEEESHHHHTTSS CS
  His_biosynth 196 asGGvgsledlkelk.segvdavivgsalyegel 228
                   asGG+g l d++el+  +g +++i+g+ lye+++
    CCG92495.1 196 ASGGIGCLRDVEELQkIKGLYGAILGKSLYEKKI 229
                   ***************67788***********998 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   5.5e-09   7.6e-06     230     304 ..      36     107 ..      33     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 5.5e-09
                 HHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHH CS
      FMN_dh 230 akraveaGvdgivvSNHGGRqldgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpfl 304
                 a++  + G+dg+ + +  G  ++g p  ++vL +i+++    +++ + gG r+ +Dv+kA+  GA+ v++G  +l
  CCG92495.1  36 AQLWEDQGADGLHIVDLEG-AFEGKPKQLSVLEKIAQQTH--LPIQYGGGLRTEEDVFKAIENGAQRVVIGSRLL 107
                 6666677888888888888.7999***********99997..*****************************7765 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   4.4e-07   0.00061     148     227 ..      35     108 ..      10     116 .. 0.80
   2 ?    4.3   0.0     0.016        23     189     209 ..     187     207 ..     153     221 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 4.4e-07
         NMO 148 earkvearGaDal.ivqGpeaGGhqGtpevgdkglfaLvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqigtrfLl 227
                  a+  e +GaD l iv    +G  +G  ++   +++++++++++   +P+   GG+ ++++v  a+  GA+ v ig+r+L 
  CCG92495.1  35 TAQLWEDQGADGLhIV--DLEGAFEG--KP---KQLSVLEKIAQQTHLPIQYGGGLRTEEDVFKAIENGAQRVVIGSRLLT 108
                 5566666666665233..35677777..33...36999****************************************984 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.016
         NMO 189 ldavdiPviAaGGiidrrgva 209
                 ++  ++Pv A GGi   r+v+
  CCG92495.1 187 VENSALPVFASGGIGCLRDVE 207
                 445569*********999996 PP

>> Trp_syntA  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.1e-07   0.00056     188     231 ..      64     108 ..      49     119 .. 0.90
   2 ?    1.2   0.0     0.095   1.3e+02      28      62 ..     151     185 ..     141     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.1e-07
                 HHHHHHHHCTSS-EEEESSS-SHHHHHHHH.TT-SEEEE-HHHHH CS
   Trp_syntA 188 elverlkkltavPvavGFGistkeqvkqva.kvadGvivGSalvk 231
                 +++e++ + t++P+  G G++t+e+v +++ ++a+ v++GS l++
  CCG92495.1  64 SVLEKIAQQTHLPIQYGGGLRTEEDVFKAIeNGAQRVVIGSRLLT 108
                 5799********************9988887**********9986 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.095
                 HHHHHHHHCT-SSEEEE---S--TTS-HHHHHHHH CS
   Trp_syntA  28 eilkalekagadviElGlpfsdPladGPvIqaanl 62 
                   +k lek+ga  +      +d   +GP Iq +++
  CCG92495.1 151 TFVKILEKSGAGFLLYTNVLTDGTLEGPDIQGTKK 185
                 5688999999999999999999999***9998765 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   8.8e-07    0.0012     200     239 ..      67     106 ..      56     111 .. 0.88
   2 ?   -2.6   0.0       1.5   2.1e+03     200     222 ..     184     206 ..     178     208 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 8.8e-07
                 HHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 200 aeaakkagvpviaDGGikysgdivkAlaaGadavmlGsll 239
                  ++a+++  p+   GG+++++d+ kA+  Ga+ v++Gs l
  CCG92495.1  67 EKIAQQTHLPIQYGGGLRTEEDVFKAIENGAQRVVIGSRL 106
                 46899999*****************************976 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
                 HHHHCTCT-EEEEES---SHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 200 aeaakkagvpviaDGGikysgdi 222
                  + +++   pv a GGi   +d+
  CCG92495.1 184 KKLVENSALPVFASGGIGCLRDV 206
                 55677788999999999876665 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00022      0.31     167     226 ..      57     117 ..      29     133 .. 0.85
   2 !    6.9   0.0    0.0022         3     171     218 ..     179     226 ..     139     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00022
                 -C.G--CHHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHH.H CS
         Dus 167 eg.tadweaIkevkqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfae.s 226
                 eg + +++  +++ q+  +p+   G+ ++ ed+ +++e+ Ga+ v+ig   l +P ++++ s
  CCG92495.1  57 EGkPKQLSVLEKIAQQTHLPIQYGGGLRTEEDVFKAIEN-GAQRVVIGSRLLTDPSFLEKiS 117
                 555677778899*************************98.****************998655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0022
                 -CHHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCC CS
         Dus 171 dweaIkevkqavsipviaNGdIkdaedaqaileetGadgvmigrgalg 218
                 d++  k++ ++  +pv+a G+I  ++d+++  +  G  g + g+  ++
  CCG92495.1 179 DIQGTKKLVENSALPVFASGGIGCLRDVEELQKIKGLYGAILGKSLYE 226
                 5666788888999****************************9998886 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.2   4.4e+03      67      79 ..      37      49 ..      34      51 .. 0.77
   2 !    7.7   0.0    0.0015       2.1     135     179 ..      59     104 ..      55     106 .. 0.87
   3 !    8.5   0.0   0.00086       1.2     116     160 ..     160     201 ..     141     213 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.2
    TMP-TENI 67 dlalavgadgvHl 79
                +l ++ gadg+H+
  CCG92495.1 37 QLWEDQGADGLHI 49
                5667789999998 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0015
    TMP-TENI 135 eplgleglkelaealeiPvvaiGGit.lenvaevleagadgvavvs 179
                 +p  l+ l+++a+++++P+   GG++ +e+v +++e ga++v + s
  CCG92495.1  59 KPKQLSVLEKIAQQTHLPIQYGGGLRtEEDVFKAIENGAQRVVIGS 104
                 6889999*****************962678**********998765 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00086
    TMP-TENI 116 gadYigvGpifpTdtKkdaeplgleglkelaealeiPvvaiGGit 160
                 ga ++ +  +    t    e  +++g k+l+e++ +Pv+a GGi 
  CCG92495.1 160 GAGFLLYTNVLTDGTL---EGPDIQGTKKLVENSALPVFASGGIG 201
                 5555555555433333...4457889999**************96 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.2e-06    0.0044     227     288 ..      59     117 ..      54     123 .. 0.91
   2 ?   -0.7   0.0      0.46   6.4e+02     242     261 ..     189     208 ..     180     234 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.2e-06
                 HHHHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHH CS
      DHO_dh 227 kdialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpkiakkik 288
                 k+  l v+ +++++++  +pi   GG+ + eD++  ie GA  v +++ l  ++p   +ki 
  CCG92495.1  59 KPKQLSVLEKIAQQTH--LPIQYGGGLRTEEDVFKAIENGAQRVVIGSRL-LTDPSFLEKIS 117
                 6677889999999999..*******************************9.89999999986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.46
                 TT.S-EEEESS--SHHHHHH CS
      DHO_dh 242 kkeipiIgvGGiesgeDale 261
                 ++ +p+ ++GGi   +D+ e
  CCG92495.1 189 NSALPVFASGGIGCLRDVEE 208
                 567999******99888755 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.8e-06     0.012     129     169 ..      64     104 ..      60     107 .. 0.91
   2 ?   -0.8   0.0      0.65     9e+02     132     158 ..     184     210 ..     180     215 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.8e-06
                   HHHCTSTTS...EEEEESS--SHHHHHHHCTT.SSEEEE-- CS
  G3P_antiterm 129 kvikeikkelkipiiaGGLietkedveealkaGaiavstsn 169
                   +v+++i +++++pi  GG ++t+edv +a+++Ga+ v  ++
    CCG92495.1  64 SVLEKIAQQTHLPIQYGGGLRTEEDVFKAIENGAQRVVIGS 104
                   6899*******************************998765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.65
                   CTSTTS...EEEEESS--SHHHHHHHC CS
  G3P_antiterm 132 keikkelkipiiaGGLietkedveeal 158
                   k++ +++ +p++a+G i   +dvee+ 
    CCG92495.1 184 KKLVENSALPVFASGGIGCLRDVEELQ 210
                   678888999*****9999888888765 PP

>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00015      0.21      68     169 ..      30     132 ..      24     139 .. 0.81
   2 ?    3.0   0.0     0.035        48     200     252 ..     184     235 ..     178     237 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
                 --HHHHHHHHTTT.-SEEEEE--CCCC---CCH...HHHHHHH-SS-EEEES---SHHHHHHHHHCT-SEEEEECCCS-HHHHHHHHHHHCCTT-EEEE CS
        IGPS  68 fdpaeiAkkyeeagAsaiSVLteekyFqGsled...LrevrqavslpvlrKdFiideyqieearalgadaiLLivkvledeeleelaeaakslglevLv 163
                  dp + A+ +e+ gA+ + +   e  F+G+ ++   L++++q+ +lp+     +  e  + +a   ga+ + +  ++l+d     l++ +  +g e +v
  CCG92495.1  30 SDPLQTAQLWEDQGADGLHIVDLEGAFEGKPKQlsvLEKIAQQTHLPIQYGGGLRTEEDVFKAIENGAQRVVIGSRLLTDPS--FLEKISGAVGSERIV 126
                 578999***************99******87661115789999999999999999999***********9999999999987..566667777766666 PP

                 EESSHH CS
        IGPS 164 Evhdee 169
                    d++
  CCG92495.1 127 AAIDAK 132
                 666555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.035
                 HHHCHCC-TT.SEEEEESSS-SHHHHHHHCC.TT-SEEEESHHHHC-TTHHHHHH CS
        IGPS 200 eeLaklvpkd.vllvaeSGiktredveklke.egvnafLvGeslmrqedvekair 252
                 ++L++   ++   + a  Gi    dve+l++ +g  + + G+sl +++   ++i+
  CCG92495.1 184 KKLVE---NSaLPVFASGGIGCLRDVEELQKiKGLYGAILGKSLYEKKISIQTIK 235
                 44444...33267788899**********9856899999*****99876666665 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   8.6e-06     0.012     265     307 ..      65     107 ..      55     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.6e-06
                   HHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHH CS
  Glu_synthase 265 tlkeeglrdrvsliadGglktgadvvkalalGAdavgigtaal 307
                   +l +   + ++ ++  Ggl+t +dv+ka+  GA+ v ig+  l
    CCG92495.1  65 VLEKIAQQTHLPIQYGGGLRTEEDVFKAIENGAQRVVIGSRLL 107
                   56666777888999*************************9765 PP

>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.8   2.5e+03      77      95 ..     124     142 ..      86     148 .. 0.68
   2 ?   12.0   0.0   0.00011      0.15      42      82 ..     148     187 ..     145     199 .. 0.79
   3 ?   -2.5   0.1       3.5   4.8e+03      45      65 ..     210     230 ..     208     235 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.8
   TnpB_IS66  77 eeaveltaeqlelLleGld 95 
                 + + +++a++ ++L+eG  
  CCG92495.1 124 RIVAAIDAKDGQILMEGWT 142
                 4467788888889998865 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00011
   TnpB_IS66  42 rrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeavel 82 
                 r ++ +KiL   g Gf+l++  L +g+++ p+  + ++  +
  CCG92495.1 148 RMETFVKILEKSGAGFLLYTNVLTDGTLEGPD-IQGTKKLV 187
                 567889************************97.54444444 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.5
   TnpB_IS66  45 drlKiLlwdgnGfvllykrLe 65 
                 +++K L+    G  l+ k+++
  CCG92495.1 210 QKIKGLYGAILGKSLYEKKIS 230
                 689999999999999999875 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00017      0.23     176     215 ..      70     110 ..      46     140 .. 0.76
   2 ?   -2.5   0.0       2.1   2.9e+03     184     220 ..     195     232 ..     173     237 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
                 HHHSSSEEEEESS--SHHHHHHHHCC.SSEEEE-CHHHHHH CS
        PcrB 176 kklekarlivGGGirsaEkAkevvea.ADvivvGnvveekd 215
                 ++ ++  + +GGG+r +E+  + +e  A  +v+G  +  ++
  CCG92495.1  70 AQQTHLPIQYGGGLRTEEDVFKAIENgAQRVVIGSRLLTDP 110
                 333455678*************************9776665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.1
                 EEESS-...-SHHHHHHHHCCSSEEEE-CHHHHHHHCHHH CS
        PcrB 184 ivGGGi...rsaEkAkevveaADvivvGnvveekderkid 220
                 +  GGi   r+ E+ +++ +     + G  ++ek+   i+
  CCG92495.1 195 FASGGIgclRDVEELQKIKG-LYGAILGKSLYEKK-ISIQ 232
                 55666522233333333332.23345566667666.4455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1533.66
//
Query:       CCG92496.1  [L=801]
Description: Outer membrane receptor protein, mostly Fe transport [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-05   24.2   0.6    6.5e-05   23.5   0.6    1.4  1  Plug      TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.6   3.6e-09   6.5e-05       3     107 ..      60     159 ..      58     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3.6e-09
                 GCCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHCTTS CS
        Plug   3 kdtpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpianggsgagdlssidpedierievlkGpasalyG 101
                 ++t+ + ++v++  +++ + ++++++ ++  g+n  ++ +g+ +++  +RGl     + +++G+ + + +++a+    ++p++ e +++++Gp+  ++G
  CCG92496.1  60 EETTRTAQIVSRRSLQTVNFQNVNELSAYQVGINQ-TQMTGSPQAEPILRGL---PATRYRNGMLV-GFSRDAQYGPLMNPNMDENLDMVTGPSNIIFG 153
                 6899999***************************6.88888889999*****...56778999976.456677777799******************** PP

                 STGSSE CS
        Plug 102 sdaigG 107
                  + ++G
  CCG92496.1 154 PQELAG 159
                 *99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5466.90
//
Query:       CCG92497.1  [L=352]
Description: Calcineurin-like phosphohydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-15   56.4   0.0    8.6e-15   55.8   0.0    1.3  1  Metallophos    Calcineurin-like phosphoesterase
    1.1e-08   35.5   0.0    4.3e-08   33.5   0.0    1.8  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
  ------ inclusion threshold ------
      0.029   14.9   0.0      0.057   13.9   0.0    1.4  1  Usp            Universal stress protein family


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   1.4e-18   8.6e-15       1     203 [.     125     293 ..     125     294 .. 0.74

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 1.4e-18
                  EEEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS..HHHHHHHHH.HHHHHHHTSEEEEEC-TTSCHHHHHHHHHHHHHHHHHHH CS
  Metallophos   1 lrilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrg..dlekellel.laalvkypipvylllGNHegfeeellnkygylgifsepw 95 
                  lr++v +D+H a g  + ++l ++++++++  +pdl+ll+GDl d++   leke ++  +  l + p  vy + GNHe + +++ ++ ++l++ + ++
   CCG92497.1 125 LRLVVASDIH-AGGTIGKRRLSRIINKIQSL-EPDLILLPGDLLDGSrtALEKEGIDKvFMSLSA-PYGVYGCIGNHE-CFYGSDSLAAFLEKCGITI 218
                  5899******.*****************888.***************774444444443444444.5667********.5555555555555554444 PP

                  EHH..HCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHHHT CS
  Metallophos  96 rsd..aevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepgdewlkdlekrekadwvivlgHsplyrgsgylfgdealedllkky 191
                   +d  +ev ++l++++  +    v +l G               +++++     + +l+     ++ + ++v+ H+p          +ea+e     +
   CCG92497.1 219 LKDeiKEVDQFLYIVGRNDR--AVEVLEGK--------------EKRKPL----KVILQG---IDRSKAIFVMDHRPTA-------IEEAVE-----N 281
                  44444888899999997777..77777777..............222222....666666...99999***********.......666666.....9 PP

                  TESEEEEESSSS CS
  Metallophos 192 gvdlvisGHtHv 203
                  +vdl ++GHtH+
   CCG92497.1 282 QVDLLVCGHTHQ 293
                  9**********7 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   7.2e-12   4.3e-08       2     130 ..     126     294 ..     125     348 .. 0.59

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 7.2e-12
  Metallophos_2   2 klaiiSDlH....snldaleavlealkevgvdaiihaGDl...eeeep....e.vleellela...pvlaVrGNnD...............eevve 67 
                    +l++ SD+H       ++l ++++++++ ++d+i++ GDl            e + + +++l     v+ + GN++               +   +
     CCG92497.1 126 RLVVASDIHaggtIGKRRLSRIINKIQSLEPDLILLPGDLldgSR--TalekEgIDKVFMSLSapyGVYGCIGNHEcfygsdslaaflekcG---I 216
                    789******88774567888999****************765322..223332333444444344488888889999999888877774441...3 PP

  Metallophos_2  68 edvlreaaelgtdl....peeaelel.agek......vlliHgdpl........gvkdalaellkeaeegsdvvvcGHtHvp 130
                      + +e +e+++ l     +++ +e+ +g++      v l   d          + + a++e+++    ++d++vcGHtH+ 
     CCG92497.1 217 TILKDEIKEVDQFLyivgRNDRAVEVlEGKEkrkplkVILQGID-RskaifvmdHRPTAIEEAVEN---QVDLLVCGHTHQG 294
                    33333333333333344324444443322222334332222222.135554332345666666655...888********97 PP

>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.6e-06     0.057      74     115 ..     253     294 ..     226     297 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.6e-06
                 HHHCTTCEEEEEEEESSHHHHHHHHHHHTTSSEEEEESCCSS CS
         Usp  74 aaeaggvkvevvveegdpaeeilevaeeedadliVvGsrgrs 115
                 +   +g+++   + + d +++ +e+a e+++dl+V+G+++++
  CCG92497.1 253 KVILQGIDRSKAIFVMDHRPTAIEEAVENQVDLLVCGHTHQG 294
                 4567888999999999**********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2501.12
//
Query:       CCG92498.1  [L=156]
Description: DoxX family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-20   71.1  12.0    8.9e-20   71.1  12.0    1.5  2  DoxX      DoxX
  ------ inclusion threshold ------
      0.039   14.1  12.2      0.071   13.2  12.1    1.6  1  DoxX_2    DoxX-like family
        3.1    7.6   5.1        3.9    7.3   1.7    2.0  2  IncD      Inclusion membrane protein D


Domain annotation for each model (and alignments):
>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1  12.0   1.5e-23   8.9e-20       2      85 .]      23     111 ..      22     111 .. 0.97
   2 ?   -2.5   0.1       1.4   8.2e+03      43      56 ..     125     138 ..     114     141 .. 0.63

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 1.5e-23
        DoxX   2 llllRlllgvlfiahGlqkltg....fglegtaasla.alglpppellaylaalvElvgglllllGlltRlaAlalavtllvatltvhr 85 
                  l+lRl+l+++f+ahG qkl+g     gle+ta s+a +++l p  l+a la+ +E++g++ll+lGl+tRlaA+ l+v++ va+l+vhr
  CCG92498.1  23 FLPLRLVLSLIFFAHGSQKLFGwfggKGLEATALSFAeKFHLVPGILWASLAGGGEFLGAILLALGLATRLAAFNLVVIMSVAILVVHR 111
                 699*******************999989999***9999**************************************************6 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.4
        DoxX  43 llaylaalvElvgg 56 
                 l +++ al  +vgg
  CCG92498.1 125 LSLWAGALSLVVGG 138
                 45555555555555 PP

>> DoxX_2  DoxX-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  12.1   1.2e-05     0.071       4      85 ..      28     113 ..      26     137 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
      DoxX_2   4 vllalffllsGvakllra.......eevvakfaqlg.fp.ssfvrllGvvellgalgLllplvtaprltplAavglallmvgAiathlrrg 85 
                 ++l l+f++ G+ kl+ +       ++++   +++  +p   +  l G  e+lga++L l+l      t lAa  l+++m  Ai++  r+ 
  CCG92498.1  28 LVLSLIFFAHGSQKLFGWfggkgleATALSFAEKFHlVPgILWASLAGGGEFLGAILLALGL-----ATRLAAFNLVVIMSVAILVVHRHA 113
                 68899999999999998888766644555555567547744568999**************7.....689**************9876654 PP

>> IncD  Inclusion membrane protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.037   2.2e+02      68     113 ..      28      74 ..      18      78 .. 0.78
   2 ?    7.3   1.7   0.00065       3.9      31      78 ..      87     137 ..      83     148 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.037
        IncD  68 vlaaslffgvgafllggalvggvltteavt.rerlhrsqtlmwnnlc 113
                 ++ + +ff  g+  l g + g  l + a++  e++h    ++w  l+
  CCG92498.1  28 LVLSLIFFAHGSQKLFGWFGGKGLEATALSfAEKFHLVPGILWASLA 74 
                 55566899999999999999877766665428999999999998875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00065
        IncD  31 lptakrlvavavatilavallvv...agllfsgvlcspvsvlaaslffgvg 78 
                 l  a rl a  +  i++va+lvv   a ++  g +   +s+ a +l + vg
  CCG92498.1  87 LGLATRLAAFNLVVIMSVAILVVhrhAFFVHDGGMEYALSLWAGALSLVVG 137
                 66799*****************93333344567777777776654443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1200.66
//
Query:       CCG92499.1  [L=1077]
Description: carbamoyl-phosphate synthase, large subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.7e-106  352.0   0.0    3.9e-67  225.8   0.0    2.2  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    2.3e-38  131.3   0.0    5.9e-38  130.0   0.0    1.7  1  CPSase_L_D3      Carbamoyl-phosphate synthetase large chain, 
    1.4e-19   70.0   0.0    5.2e-19   68.2   0.0    2.1  1  MGS              MGS-like domain
      1e-12   47.9   0.1    8.5e-08   32.0   0.1    3.0  2  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
    4.5e-11   42.6   0.0    1.4e-07   31.2   0.0    2.4  2  ATP-grasp        ATP-grasp domain
    1.3e-09   37.9   0.0     0.0002   21.0   0.0    2.4  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    4.7e-09   36.5   0.0    1.1e-05   25.5   0.0    2.8  2  ATP-grasp_3      ATP-grasp domain
    1.1e-07   31.6   0.0     0.0047   16.5   0.0    3.6  4  RimK             RimK-like ATP-grasp domain
    1.5e-07   31.4   0.1     0.0032   17.3   0.0    2.9  2  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
    7.8e-06   25.6   0.0     0.0015   18.2   0.0    3.1  2  ATP-grasp_4      ATP-grasp domain
    0.00068   19.2   0.0      0.085   12.3   0.0    2.6  2  ATP-grasp_5      ATP-grasp domain
    0.00087   18.9   0.0      0.014   14.9   0.0    2.7  2  ATP-grasp_2      ATP-grasp domain
  ------ inclusion threshold ------
      0.082   13.1   0.1        2.6    8.2   0.0    3.1  3  Isochorismatase  Isochorismatase family
       0.12   12.6   0.1       0.44   10.8   0.1    1.9  1  PyrI             Aspartate carbamoyltransferase regulatory ch
       0.16   11.4   0.0       0.37   10.1   0.0    1.6  1  Put_Phosphatase  Putative Phosphatase


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.8   0.0   3.3e-70   3.9e-67       1     210 [.     128     335 ..     128     336 .. 0.98
   2 !  124.1   0.0   4.3e-39   5.2e-36       1     209 [.     672     873 ..     672     875 .. 0.95

  Alignments for each domain:
  == domain 1  score: 225.8 bits;  conditional E-value: 3.3e-70
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-.SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEE CS
  CPSase_L_D2   1 Dkesakealkkinvpvvpssaapvetleealaiakeig.yPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEv 97 
                  D++ +ke + +i+ +v +s +a  +++eea a+a++i  yP ii++af+lGG+G+++a+n+ee++++++++l+ ++      ++l+e+ l g+ke E+
   CCG92499.1 128 DRQLFKEEMLRIGLDVPQSGIA--RNMEEAKAVAAQINrYPLIIRPAFTLGGQGGGIAYNREEFEAIAARGLSVSP----IGEILIEEGLVGWKEFEM 219
                  9*******************99..**********99955************************************7....89**************** PP

                  EEEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEE.EEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS CS
  CPSase_L_D2  98 evlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgag.tveflldpkskeyyviEvNtRlsvesalaekaTG 192
                  ev+rD+k+ ++ +c++en++++  +t+++i+vAP+qtL+dee+q++r  + +v+r++gv+++g +++f++dpk+++++viE+N+R+s++sala+kaTG
   CCG92499.1 220 EVMRDRKDSCVLICSIENLDPMgvHTGDSITVAPAQTLSDEEFQKMRDWSFAVIRQIGVETGGsNIQFAVDPKTGRMVVIEMNPRVSRSSALASKATG 317
                  ***********************************************************98887********************************** PP

                  --HHHHHHHHHTT--GCG CS
  CPSase_L_D2 193 ldlvkeaakialgekLee 210
                  ++++k+aak+a g++L+e
   CCG92499.1 318 FPIAKIAAKLAIGYTLDE 335
                  ****************97 PP

  == domain 2  score: 124.1 bits;  conditional E-value: 4.3e-39
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D++ ++++++k++ +  +s +   ++++e++++ak+igyPv++++++ lGG+ m+++++e++l+  v++a+++a+    +k vl++++l+   e++++
   CCG92499.1 672 DRRLFSRLIAKLGLRQPQSRII--SNVQESIEAAKTIGYPVLLRPSYVLGGRAMHIVYTENDLVRFVEEAIEAAP----DKPVLLDHFLEDAIEVDID 763
                  99*****************999..**************************************************6....9****************** PP

                  EEEETTS-EEEEE.EEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--H CS
  CPSase_L_D2  99 vlrDakgnvitvc.erenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldl 195
                   ++D ++  i    e   +  ++ +++  v P   L++   +++r++   ++re++v g  +v+f++++  ++ yv+EvN+R s+  +  +ka G++l
   CCG92499.1 764 CVSDGEDVFIGAIlEHVELAGVHSGDSACVIPPFSLSEPIKEEIRQTVYLLARELKVLGLMNVQFAVQK--NNLYVLEVNPRASRTVPFISKAIGIPL 859
                  *******999655155555666**********************************************5..99************************* PP

                  HHHHHHHHTT--GC CS
  CPSase_L_D2 196 vkeaakialgekLe 209
                  +k a ++ +g+kL+
   CCG92499.1 860 AKLATQVIMGKKLK 873
                  ************98 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.0   0.0   4.9e-41   5.9e-38       4     122 .]     430     544 ..     428     544 .. 0.96

  Alignments for each domain:
  == domain 1  score: 130.0 bits;  conditional E-value: 4.9e-41
  CPSase_L_D3   4 keptdeRifaiaealrrglsveeiheltkidpwFLekleelvelekelkkkkkeldeellreakklGfsDkqiaelleeeeeeevrelrkklgilpvy 101
                   +p++eRif++ +a+r g++++++++l+ idpwFL+++eelv+ e++l+++    d++ll eak  GfsD+q+a+l++  +eeevr+lrk++++lp+y
   CCG92499.1 430 LTPRAERIFYLRHAFRCGMDIKTVASLSGIDPWFLSQVEELVKEEQKLRTSP---DPSLLLEAKMDGFSDRQLAHLWN-LSEEEVRALRKSQNCLPSY 523
                  5799*********************************************996...9********************97.77788************** PP

  CPSase_L_D3 102 krvDtcAaeFeaetpYlYstY 122
                  + vD cAaeFea+tpY+YstY
   CCG92499.1 524 RLVDSCAAEFEASTPYYYSTY 544
                  ********************9 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   4.4e-22   5.2e-19       3      95 .]     957    1041 ..     955    1041 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 4.4e-22
                  HHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCHHHHHHHHTTSCCEEEEE--THHHHHHCHHHHHHHHHHHTTSHEES CS
         MGS    3 velakklkelgfellATgGTakllkeagipvtevvektgegerlggrveildaikngeidlvintlypfkatvakdgykirraaenidIplpt 95  
                  +e+a++l++lgfe++AT+GTa++l+eag++ +    k++eg r++    +ld+ikngei lvint+++ +a++  d+++ir++ +  +Ip++t
  CCG92499.1  957 IEIARALNKLGFEIVATEGTARALNEAGVA-CMKLYKLSEG-RPN----VLDMIKNGEIALVINTPSGPTARK--DEIRIRTTSLYSKIPVMT 1041
                  799***************************.5555677888.899....*********************997..9**************987 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   9.9e-05      0.12      53     118 ..     269     338 ..     254     349 .. 0.76
   2 !   32.0   0.1   7.1e-11   8.5e-08       5     115 ..     748     874 ..     745     885 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.9e-05
  ATPgrasp_Ter  53 aerlaeefgld.glvnvQvrededg..pkLLEiNpRasGGlg.ysalaGvnlpylalklllgleteevee 118
                   + ++++++g++ g  n+Q+  d ++  ++++E+NpR+s      s ++G  ++++a+kl+ g   +e ++
    CCG92499.1 269 SFAVIRQIGVEtGGSNIQFAVDPKTgrMVVIEMNPRVSRSSAlASKATGFPIAKIAAKLAIGYTLDELPN 338
                   567788888863578****9997766899********96555156777************9975555544 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 7.1e-11
  ATPgrasp_Ter   5 llvmeyLegp.EySvDvlae.kgevlaavpRrKe....kgglq..........elek..deelielaerlaeefgldglvnvQvrededgpkLLEiN 83 
                   +l+ ++Le + E+ +D++++ +   + a+    e    +   +          +l++  +ee+ + +  la+e+++ gl+nvQ+  +++++++LE+N
    CCG92499.1 748 VLLDHFLEDAiEVDIDCVSDgEDVFIGAILEHVElagvH---SgdsacvippfSLSEpiKEEIRQTVYLLARELKVLGLMNVQFAVQKNNLYVLEVN 841
                   566666655446666666664322233333322221111...122234445553332226788889999**************************** PP

  ATPgrasp_Ter  84 pRasGGlgysala.Gvnlpylalklllgletee 115
                   pRas ++     a G+ l++la + ++g++ ++
    CCG92499.1 842 PRASRTVPFISKAiGIPLAKLATQVIMGKKLKD 874
                   *******9755555************9976555 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00089       1.1       4     160 ..     139     305 ..     136     313 .. 0.76
   2 !   31.2   0.0   1.2e-10   1.4e-07       2     160 ..     681     844 ..     680     847 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00089
                 TT--B-EEEEECCHHHHHHHHHHH.-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEE CS
   ATP-grasp   4 lglpvprflaveskeeleeaaeel.glpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGetafypvve 97 
                  gl vp+  ++++ ee++++a+++ ++p++++ +     G+G  +  ++e+ e +++        +++++Ee     kE  + v+r+++ + + +  +e
  CCG92499.1 139 IGLDVPQSGIARNMEEAKAVAAQInRYPLIIR-PAFTLGGQGGGIAYNREEFEAIAARGlsvsPIGEILIEEGLVGWKEFEMEVMRDRKDSCVLICSIE 236
                 6899********************66899998.999999999999999999988776655777678888888777667777778888888888888999 PP

                 EEEETTEEE...EEEECEE-.SCHHHHHHHHHHHHHHHHHTS.SEEEEEEEEEE.TTCTEEEEEEESS- CS
   ATP-grasp  98 tvqedgilr...lsvapaev.sekaqkkaeeiakkiveeLgg.vGvfavElFvl.edgellvnElapRp 160
                 ++   g+     + vapa+  s+++ +k ++    +++++g+  G   + + v  ++g+++v E+ pR+
  CCG92499.1 237 NLDPMGVHTgdsITVAPAQTlSDEEFQKMRDWSFAVIRQIGVeTGGSNIQFAVDpKTGRMVVIEMNPRV 305
                 999888874322677777651445667777777788888876356666666555456667777888876 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 1.2e-10
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EEE--EE CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGetafypvv 96 
                 +klgl+ p+  ++++ +e  eaa+++g+pv+++ +     G+   +v  e+dl +++e++     +++v++ +f +   E+ +  v + e  + + ++ 
  CCG92499.1 681 AKLGLRQPQSRIISNVQESIEAAKTIGYPVLLR-PSYVLGGRAMHIVYTENDLVRFVEEAieaaPDKPVLLDHFLEDAIEVDIDCVSDGED-VFIGAIL 777
                 6899****************************9.99999*************99888888887799*****************99987766.6666777 PP

                 EEEE....ETTEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS- CS
   ATP-grasp  97 etvq....edgilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRp 160
                 e+v+    ++g+   ++ p ++se +++++++++  +++eL ++G++ v + v+ +++l+v E+ pR 
  CCG92499.1 778 EHVElagvHSGDSACVIPPFSLSEPIKEEIRQTVYLLARELKVLGLMNVQFAVQ-KNNLYVLEVNPRA 844
                 777622235677789999*******************************97777.777********96 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     2e-05     0.024      19     174 ..     147     303 ..     141     311 .. 0.81
   2 !   21.0   0.0   1.7e-07    0.0002      30     174 ..     701     842 ..     680     867 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
                      HHCH-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-..SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSS CS
  Dala_Dala_lig_C  19 eakeekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkyd..ekvlvEeai.egreievavlgneklevsevgeivvkkg 109
                      ++ ++++e  +   + + yp++++pa +    G   + ++ee+++  ++ ++     ++l+Ee++   +e+e+ v+ + k  +  +  i     
       CCG92499.1 147 GIARNMEEAKAVAAQINRYPLIIRPAFTLGGQGGGIAYNREEFEAIAARGLSVSpiGEILIEEGLvGWKEFEMEVMRDRKDSCVLICSIEN--- 237
                      556677677777778889********87666777778999999988888777652279******9899*********88877777666654... PP

                      SS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT-.-SEEEEEEEE.ETTTEEEEEEEES CS
  Dala_Dala_lig_C 110 fydyeakysddkaqlevpaklekeveekiqelalkaykaldl.rGlaRvDffl.teegeivlnEvNt 174
                        d    +++d++++    +l++e+ +k+++ ++ + + +++ +G + + f +  ++g++v+ E+N+
       CCG92499.1 238 -LDPMGVHTGDSITVAPAQTLSDEEFQKMRDWSFAVIRQIGVeTGGSNIQFAVdPKTGRMVVIEMNP 303
                      .44445567788888888899*******************98459999*****77899*******96 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.7e-07
                      HHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT..-SCEEEEE--.ESEEEEEEEEE.TSSCEEEEEEEEE-SSSSS-HHHHHC. CS
  Dala_Dala_lig_C  30 kveeelgypvfVKpareGSSvGvskveseeelkeaieeafky..dekvlvEeai.egreievavlg.neklevsevgeivvkkgfydyeakysd 119
                      +  +++gypv+ +p+       ++ v +e++l +++eea++   d+ vl ++++ ++ e+++  +   e++ +  + e+v   g+      +s+
       CCG92499.1 701 EAAKTIGYPVLLRPSYVLGGRAMHIVYTENDLVRFVEEAIEAapDKPVLLDHFLeDAIEVDIDCVSdGEDVFIGAILEHVELAGV------HSG 788
                      345689*********98778899****************97545999*******9999***987761455777777777766665......468 PP

                      TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEES CS
  Dala_Dala_lig_C 120 dkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNt 174
                      d+a +  p +l++ ++e+i++++    + l++ Gl  v f ++ ++++++ EvN+
       CCG92499.1 789 DSACVIPPFSLSEPIKEEIRQTVYLLARELKVLGLMNVQFAVQ-KNNLYVLEVNP 842
                      99999*************************************9.8899******7 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0021       2.5       7     158 ..     132     305 ..     126     308 .. 0.68
   2 !   25.5   0.0   9.1e-09   1.1e-05       2     158 ..     671     844 ..     670     847 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0021
                  HHHHHTTT.S---............-EESS--SSSEEEEESS-------B--SS--TTE...............EEEE---S.EEEEEEEEE.SSSEE CS
  ATP-grasp_3   7 tykkLkeagvkvP........tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefieG.kplSvsllsdgekvl 87 
                  + +++ + g+ vP        ++++a  ++ + ++l++ p+   gg++  ++ ++ee ea+ +           l+ e + G k++ ++++ d ++  
   CCG92499.1 132 FKEEMLRIGLDVPqsgiarnmEEAKAVAAQINRYPLIIRPAFTLGGQGGGIAYNREEFEAIAARGLsvspigeiLIEEGLVGwKEFEMEVMRDRKDSC 229
                  555556667888877776444444444555569********************999888766654478899999777766665899999999999999 PP

                  EEEEEEEEEET....TEEEEE...EES----HHHH...HHHHHHHHHTTST.T--EEEEEEEEESS...SEEEEEEESS- CS
  ATP-grasp_3  88 vlavnrqliekaekefvyaGn...vtpietelkee...vvelaeevvekle.glaGyvGvDlvlkd..eepyviEvNPRl 158
                  vl ++ + ++      v +G    v+p++t  +ee   +++    v++++  +  G   + + +    +  +viE NPR+
   CCG92499.1 230 VLICSIENLDPM---GVHTGDsitVAPAQTLSDEEfqkMRDWSFAVIRQIGvE-TGGSNIQFAVDPktGRMVVIEMNPRV 305
                  999998888764...55555411156666666555000455556677777533.344447777655568999******97 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 9.1e-09
                  TSHHHHHHHHTTT.S---...........-EESS--SSSEEEEESS-------B--SS--TTE...............EEEE---.SEEEEEEEEE.S CS
  ATP-grasp_3   2 sdKlktykkLkeagvkvP.......tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefie.GkplSvsllsdg 83 
                  +d + + + + + g++ P        + + e ++   +++ + p++  gg ++ +v  ++++ +++ee          l+ +f+e   ++ ++++sdg
   CCG92499.1 671 EDRRLFSRLIAKLGLRQPqsriisnVQESIEAAKTIGYPVLLRPSYVLGGRAMHIVYTENDLVRFVEEAIeaapdkpvLLDHFLEdAIEVDIDCVSDG 768
                  6777777788888888897776643333445556669**********************999999998778999***9******8468********** PP

                  SSEEEEEEEEEEEET....TEEEEEEE....S----H..HHHHHHHHHHHHTTSTT--EEEEEEEEESS.SEEEEEEESS- CS
  ATP-grasp_3  84 ekvlvlavnrqliekaekefvyaGnvt....pietel..keevvelaeevvekleglaGyvGvDlvlkdeepyviEvNPRl 158
                  e+v + a+ + +        v +G ++    p+  ++  kee+++++  + ++l +++G++ v + ++++++yv+EvNPR 
   CCG92499.1 769 EDVFIGAILEHVEL----AGVHSGDSAcvipPFSLSEpiKEEIRQTVYLLAREL-KVLGLMNVQFAVQKNNLYVLEVNPRA 844
                  99877766655544....455555443222267766677899999999999999.*************************6 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.68   8.1e+02     136     172 ..      18      56 ..      17      64 .. 0.81
   2 !   10.0   0.0    0.0004      0.47      10      68 ..     135     192 ..     126     208 .. 0.84
   3 ?   -3.1   0.0       4.3   5.1e+03     138     170 ..     570     604 ..     549     610 .. 0.72
   4 !   16.5   0.0     4e-06    0.0047       2     182 ..     671     861 ..     670     867 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.68
                 HHHHHHCT-SEEEEEEEEE..TTEEEEEEEESS--SHHH CS
        RimK 136 ikaakamelvvaGvDllra..krgllvlEvnsspgleki 172
                 i + +a e ++ Gv   +a  ++g+ v+ +ns+p + + 
  CCG92499.1  18 IVIGQAAEFDYSGVQACKAlkEEGFRVILINSNPATIMT 56 
                 567899999*****976642278999********98765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0004
                 HHHHTT-----EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHH CS
        RimK  10 lLakakikvpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqv 68 
                  +++ +++vp++ +ar+ e+a+++  +i+ r P++++  ++  G +  +a ++++ + +
  CCG92499.1 135 EMLRIGLDVPQSGIARNMEEAKAVAAQIN-RYPLIIRPAFTLGGQGGGIAYNREEFEAI 192
                 5678899*********************9.*******9999888888888888777665 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 4.3
                 HHHHCT-SEEEEE.EEE.ETTEEEEEEEESS--SH CS
        RimK 138 aakamelvvaGvD.llr.akrgllvlEvnsspgle 170
                 + + +e +++ v  l+   + g+  + +ns+p++ 
  CCG92499.1 570 IGQGIEFDYCCVHaLMAlRELGYRTIMINSNPETV 604
                 66788899999994333134578889999999875 PP

  == domain 4  score: 16.5 bits;  conditional E-value: 4e-06
                 H-HHHHHHHHHHTT-----EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH.....GGG--EEEEE--SS-SEEEEEEEE CS
        RimK   2 rdKlkslklLakakikvpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlea.....lkeailvqeyieeaenediRvlvv 95 
                 +d+ +  +l+ak ++  p+++++ + ++  +  + i  + Pv+++ ++   G  + +  +e++l+  +e       ++ +l+ +++e a + di ++  
  CCG92499.1 671 EDRRLFSRLIAKLGLRQPQSRIISNVQESIEAAKTI--GYPVLLRPSYVLGGRAMHIVYTENDLVRFVEEaieaaPDKPVLLDHFLEDAIEVDIDCVSD 767
                 677777899*************98876665555555..8**********9999999999999988876653333455567*****************99 PP

                 TTEE.EEEEEEE--SSS----TTTT-EE...EE----HHHHH.....HHHHHHHHCT-SEEEEEEEEETTEEEEEEEE..SS--SHHHHHHHT--HHH CS
        RimK  96 ddev.vaalrrvskeGdFRsnlhrGgva...eklqlseeeke.....lAikaakamelvvaGvDllrakrgllvlEvn..sspglekiektlgidiak 182
                 +++v ++a+     e    + +h G  a    +++lse  ke     + + a ++  l ++ v    +k++l+vlEvn  +s  +  i+k +gi +ak
  CCG92499.1 768 GEDVfIGAILEH-VE---LAGVHSGDSAcviPPFSLSEPIKEeirqtVYLLARELKVLGLMNVQFAVQKNNLYVLEVNprASRTVPFISKAIGIPLAK 861
                 999856776665.34...4778888765111456777654331000122333334444455578999***********6667888899******9986 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00028      0.34       5     146 ..     131     265 ..     127     302 .. 0.83
   2 !   17.3   0.0   2.7e-06    0.0032       8     188 ..     678     843 ..     672     846 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00028
                 HHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S.EEEEEEEEECT CS
      GARS_A   5 fakdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG.eEvsllalvdg 102
                   k+ + ++g+  ++     ++eeak++  + +   l+++++   +g+g  +a ++ee  ++++  l+    G    +++iEe l G +E+ + ++ d 
  CCG92499.1 131 LFKEEMLRIGLDVPQSGIARNMEEAKAVAAQINRYPLIIRPAFTLGGQGGGIAYNREEFEAIAARGLSVSPIG----EILIEEGLVGwKEFEMEVMRDR 225
                 5678889999999*******************99999*********************999999999988888....9********9779*******99 PP

                 TEEEE---BEEEEEEECCC.EEEEECECEEEES-TTS-HHHHHHH CS
      GARS_A 103 ktvkplplaqdhkrvlegD.kgpnTGGmGayspapvvteelleki 146
                 k+   l  + +     + D  g+ TG   +++pa ++++e+ +k+
  CCG92499.1 226 KDSCVLICSIE-----NLDpMGVHTGDSITVAPAQTLSDEEFQKM 265
                 98777665433.....22214666666666666666666666665 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.7e-06
                 HHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---.SEEEEEEEEECTTEE CS
      GARS_A   8 dllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelle.GeEvsllalvdgktv 105
                 +l++k g++ ++ + +++++e  e  ++ + ++  ++++ + +g+ + ++ +e++ ++ v+e +e        + v+++++le  +Ev + +++dg++v
  CCG92499.1 678 RLIAKLGLRQPQSRIISNVQESIEAAKTIGYPV-LLRPSYVLGGRAMHIVYTENDLVRFVEEAIE----AAPDKPVLLDHFLEdAIEVDIDCVSDGEDV 771
                 68999****************************.9*****************************8....45689********8368************9 PP

                 EE---BEEEEEEECCCEEEEECECEEEES-TTS-HHHHHHHHHHTHHHHHHHHHCTT---EEEEEEEEEEETTEEEEEEEESS CS
      GARS_A 106 kplplaqdhkrvlegDkgpnTGGmGayspapvvteellekikeeileptveglkkegipfkGvLyaglmlvedgpkvlefnvR 188
                   + +  +h  +     g+  G   ++ p   ++e + e+i+     +tv  l++e  +  G++ +++ + ++  +vle n R
  CCG92499.1 772 F-IGAILEHVELA----GVHSGDSACVIPPFSLSEPIKEEIR-----QTVYLLARE-LKVLGLMNVQFAVQKNNLYVLEVNPR 843
                 7.55666777664....6666666666655555555444444.....477777777.88889999999999999999999987 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.2e-06    0.0015       3     151 ..     165     304 ..     163     310 .. 0.80
   2 ?    3.6   0.0     0.038        45       2     151 ..     707     843 ..     706     847 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.2e-06
  ATP-grasp_4   3 lPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieG.eEfavdayfdeeGepvilnilkkefaseedvsdrly 99 
                  +P++i+P+   + +G  ++ n+ee++a  a+              +v   +++l+Ee + G +Ef +++  d++   v++  ++    +  ++ d + 
   CCG92499.1 165 YPLIIRPAFTLGGQGGGIAYNREEFEAIAARG-----------L-SVSPIGEILIEEGLVGwKEFEMEVMRDRKDSCVLICSIENLDPMGVHTGDSIT 250
                  66677777777777766667777666622221...........1.23445899**99887769**********999998888899999999999***9 PP

  ATP-grasp_4 100 vtsak.vieetlealeellkevnallglknfpvHiElrvs.edgkiipiEvnpl 151
                  v +a+ ++ e+++++ ++  +v +++g++ + + i + v+ ++g++++iE+np+
   CCG92499.1 251 VAPAQtLSDEEFQKMRDWSFAVIRQIGVETGGSNIQFAVDpKTGRMVVIEMNPR 304
                  999863678899***************************94567*********6 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.038
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepv.ilnilkkefaseedvsdrl 98 
                   +Pv ++Ps   + + ++++ +e+++ + v++         e  +++ v  ++f +E+ i   E+ +d     +Ge v i +il++  +   +  d  
   CCG92499.1 707 GYPVLLRPSYVLGGRAMHIVYTENDLVRFVEEAI-------EAAPDKPVLLDHF-LEDAI---EVDIDCVS--DGEDVfIGAILEHVELAGVHSGDSA 791
                  5777777777777777777777777766443322.......2223333323333.35555...45566554..6666625589999888877777766 PP

  ATP-grasp_4  99 yvt.sakvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnpl 151
                   v+ + +++e  +e++ +++  ++++l++  + + + + v+++ +++++Evnp+
   CCG92499.1 792 CVIpPFSLSEPIKEEIRQTVYLLARELKV-LGLMNVQFAVQKN-NLYVLEVNPR 843
                  55515688888899999999999988886.5778899999986.7999999997 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.029        34      21      49 ..     138     167 ..     115     173 .. 0.80
   2 !   12.3   0.0   7.1e-05     0.085      17      52 ..     678     713 ..     672     715 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.029
  ATP-grasp_5  21 aygipvvetrlassaeeaveaaeeig.ypv 49 
                   +g++v+++ +a++ eea ++a++i+ yp 
   CCG92499.1 138 RIGLDVPQSGIARNMEEAKAVAAQINrYPL 167
                  58***********************52665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 7.1e-05
  ATP-grasp_5  17 elleaygipvvetrlassaeeaveaaeeigypvvlK 52 
                  +l++ +g++ +++r++s+++e +eaa++igypv l+
   CCG92499.1 678 RLIAKLGLRQPQSRIISNVQESIEAAKTIGYPVLLR 713
                  68999****************************875 PP

>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.2e-05     0.014      12     120 ..     137     230 ..     128     237 .. 0.75
   2 ?    0.3   0.0      0.35   4.2e+02       9      54 ..     678     722 ..     676     743 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
                  HCTT----SEEEESSHHHHHHHHHHHTSSSEEEEE--SSSTCCCTTCEEEESSHHHHHHHHHCCTTSEEE-TTS-TT-EEE--EEEEE---ECEEEEE CS
  ATP-grasp_2  12 akygvkvpegevaesaeeaeeaakklgekelvvKaQvlaGGRGKagGvklvkskeeakeaakellgkelvtkqtgkeGkkvekvlveealdikkElYl 109
                   + g++vp++ +a++ eea+++a+++++  l+++     GG G  gG+ +  + ee++++a + l+             ++ ++l+ee l   kE+ +
   CCG92499.1 137 LRIGLDVPQSGIARNMEEAKAVAAQINRYPLIIRPAFTLGGQG--GGIAY--NREEFEAIAARGLSV--S---------PIGEILIEEGLVGWKEFEM 219
                  46799***********************************876..88865..567777777664443..2.........4556666666666666666 PP

                  EEEEETTTTEE CS
  ATP-grasp_2 110 sivlDraskkv 120
                   ++ Dr+ ++v
   CCG92499.1 220 EVMRDRKDSCV 230
                  66666666554 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.35
                  HHHHCTT----SEEEESSHHHHHHHHHHHTSSSEEEEE--SSSTCC CS
  ATP-grasp_2   9 eilakygvkvpegevaesaeeaeeaakklgekelvvKaQvlaGGRG 54 
                   ++ak g++ p++++ ++ +e  eaak +g  +  ++     GGR 
   CCG92499.1 678 RLIAKLGLRQPQSRIISNVQESIEAAKTIGYPV-LLRPSYVLGGRA 722
                  58899*************************999.777777778884 PP

>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0021       2.6     120     147 ..     573     600 ..     549     621 .. 0.89
   2 ?    0.5   0.0      0.52   6.2e+02      23      46 ..     689     712 ..     681     743 .. 0.88
   3 ?   -2.9   0.1       5.4   6.4e+03      24      52 ..    1043    1071 ..    1039    1074 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0021
  Isochorismatase 120 GiatdvCVeatardaldlGyevvvvsDA 147
                      Gi+ d+C+ +  +++++lGy+++++   
       CCG92499.1 573 GIEFDYCCVHALMALRELGYRTIMINSN 600
                      99**********************9765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.52
  Isochorismatase  23 isavveninkllkaarkagipvif 46 
                       s++++n+++ ++aa++ g+pv+ 
       CCG92499.1 689 QSRIISNVQESIEAAKTIGYPVLL 712
                      6899*****************985 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 5.4
  Isochorismatase   24 savveninkllkaarkagipviftrdvhe 52  
                        a+ +++++++++ + ++i+v + + +h+
       CCG92499.1 1043 IAAARATVEAIRSLQSREIHVKALQEYHH 1071
                       56778889999999999999999999988 PP

>> PyrI  Aspartate carbamoyltransferase regulatory chain, allosteric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00037      0.44      30      85 ..    1004    1056 ..     998    1063 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00037
                  -T...TS-EEEEEEEEETTTEEEEEEEEET----HHHHHHHCCC.-TT-EEEEEETT CS
        PyrI   30 dklkseekvaiiknvkskklgkKdiikiegkelseeeldklali.apnatiniIkdg 85  
                   k  ++ ++a+++n++s  + +Kd i+i +++l  +++ +++ i a +at++ I+  
  CCG92499.1 1004 IK--NG-EIALVINTPSGPTARKDEIRIRTTSL-YSKIPVMTTIaAARATVEAIRSL 1056
                  32..33.69*********************999.566666655516789***99975 PP

>> Put_Phosphatase  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00031      0.37      62     115 ..     735     785 ..     718     789 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00031
  Put_Phosphatase  62 dikkvlrsiplspglvelikslakkkleldliiiSDaNsffieeileaagledl 115
                       ++++++  p +p l++   +    + e+d+  +SD   +fi+ ile+ +l+ +
       CCG92499.1 735 FVEEAIEAAPDKPVLLD---HFLEDAIEVDIDCVSDGEDVFIGAILEHVELAGV 785
                      44555555555555554...555667899*******************999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1077 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 7521.58
//
Query:       CCG92500.1  [L=369]
Description: Radical SAM domain protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-17   64.1   0.0    3.5e-17   63.3   0.0    1.4  1  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0     2e-21   3.5e-17       1     166 [.      74     247 ..      74     248 .. 0.93

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 2e-21
                  EEEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHG....... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekg.vkevilgggepllypdfvellerlaklavpgiritvetngtlpd....... 90 
                  ++ t+ Cn  C+fCa+++t  + +++++ls+e+i+e++kel +  g v  +++gg +p l  d++ +l+  ++++ p i+i+  +++  +        
   CCG92500.1  74 INYTNVCNTYCKFCAFYRT-LKDPDHYVLSIEQIEEKIKEL-EAIGgVQILLQGGHHPGLGIDYYLDLLFSIRKKFPHINIHGFSPPEFLHfsktfrl 169
                  57899*************9.99*******************.78887****************9999988888889*************99******* PP

                  ..HHHHHHHHHTT.-SEEEEEEBSSSHHHHHHHHT.CTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH CS
                  ..xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  91 ..eeklerllelg.vdrvslgleaaddekvlklmn.rghtfeevlealeklreagikrvvdrivglpGendeeleellel 166
                    ee+++r+ e+g       g e++ d  v+k++   + + ee+l ++++++ +g+k ++ +++ ++ e  e++ e+le 
   CCG92500.1 170 pvEEIIKRFMEAGlGSIPGGGGEILVDS-VRKKIApLKCSSEEWLGVMRTAHHLGLK-SSATMMFGHVEQLEDRLEHLEK 247
                  *************888889999999999.*******9********************.8999999999999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2700.88
//
Query:       CCG92501.1  [L=246]
Description: Predicted periplasmic solute-binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-37  127.9   0.0    6.4e-37  127.5   0.0    1.2  1  VitK2_biosynth  Menaquinone biosynthesis


Domain annotation for each model (and alignments):
>> VitK2_biosynth  Menaquinone biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.5   0.0   3.5e-41   6.4e-37       2     221 ..       8     201 ..       7     231 .. 0.91

  Alignments for each domain:
  == domain 1  score: 127.5 bits;  conditional E-value: 3.5e-41
                     EEEEESSHHHHHHHHHHHTTSS..SGCCEEEEEE-HHHHHHHHHTTS-SEEEEEHHHHTTCTTTEEEESEESCEEEESSSSEEEEESS-CCC-SS CS
  VitK2_biosynth   2 rlGhspylNdlflfyaLvegkvdsegleveivledpetlnrallegelDvakiSsaayariaddyalLpdlsisalGrvygvllvskvpleeleg 96 
                     ++G +pylN+ +l+y+L          + +iv + p++l   l eg++Dva+ +  a +    +y++  ++ i+a+G+vy+v+lv  +pl+ l+ 
      CCG92501.1   8 TIGSVPYLNAKPLIYGL----------NNHIVFAAPAQLSLLLKEGKVDVALCPLGASLIEGWSYFV-DGIGIVADGDVYSVILVNDKPLDALR- 90 
                     79***************..........569***************************9997777776.56******************9*9999. PP

                     S.T.EEEESTTTSHHHHHHHHHHCSTS----EEEEE-GGGHHHHHHTTSSEEEEECCHHHTGGGGTT.EEEEEHHHHHHHHHSS-EEEEEEEEEC CS
  VitK2_biosynth  97 elgkrvalpgestTsvlLlrlllaeryglkprlvevpfdeieaavlegedagLlIgesaltyaeegl.kkvlDLgelWeeltglPlvlglwvvrr 190
                         +v  + es++svlLlr++++ ++g + r+v ++         e++d+ LlIg++al+y++e+   +v+DLg lW++ltglP+v++lw +r 
      CCG92501.1  91 ----TVRADFESRSSVLLLRVIFECFFGKPLRFVSAE---------EEADGFLLIGDKALQYRKEHPdRTVIDLGGLWKKLTGLPFVFALWTIRS 172
                     ....**********************97777888888.........4569**********88877664899************************ PP

                     CCHHHHHHHHHHHHHHHHHHHHHSHHHHHHH CS
  VitK2_biosynth 191 dlaaeaakeleealreSveyalahldevaey 221
                      +  e+ ++++e l++++e++la+++++a+ 
      CCG92501.1 173 GY--EEKEKIKELLTQAKERGLASIEKIAQS 201
                     *9..6678*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1861.20
//
Query:       CCG92502.1  [L=764]
Description: Preprotein translocase subunit SecD [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-73  246.2  16.6    4.3e-56  189.3   2.8    2.4  2  SecD_SecF  Protein export membrane protein
    1.5e-05   22.9  27.4    0.00041   18.2  12.8    2.2  2  ACR_tran   AcrB/AcrD/AcrF family
    7.6e-05   21.8  26.1    0.00013   21.0  14.4    3.1  3  MMPL       MMPL family
     0.0081   15.6   8.7      0.018   14.5   0.1    3.4  3  Sec_GG     SecD/SecF GG Motif


Domain annotation for each model (and alignments):
>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   6.0   9.2e-21   4.1e-17      13     186 ..     280     450 ..     270     453 .. 0.93
   2 !  189.3   2.8   9.7e-60   4.3e-56      13     187 ..     573     747 ..     563     749 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 9.2e-21
                 EEEEEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHH CS
   SecD_SecF  13 aekisvetvgpsvskelaekavlallialvliliyvalrFewrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvren 111
                 +++ +   v+ps++++ + +++ a l+a++ ++++++++++   +l +iial+  +++++g+l+ +++ ++l  +a+++  iG  v+ +v++++r+r++
  CCG92502.1 280 VKILEERGVDPSLGRDSIVSGINAALAAFASVVLFMVFYYRL-AGLVSIIALLVNLLLLLGLLAQFHFTLTLPGIAGIILTIGMAVDANVLIYERIRDE 377
                 56778889**************************99999987.699***************************************************** PP

                 HHH--SS-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHH CS
   SecD_SecF 112 lrkkkratlkeiinlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiasplllll 186
                 l+     +++++i  + n+ ++      ++++++ v+l+ lg++ l++fa++l++G+++  + ++ ++ ++  +l
  CCG92502.1 378 LEV--GVPVRQAIFIGFNKAFSAIFDSNVSLIIPSVILMELGSGPLQGFAVTLVLGIVANLFAALVLSRNVFEWL 450
                 876..99***************777788889999***************************99999998888776 PP

  == domain 2  score: 189.3 bits;  conditional E-value: 9.7e-60
                 EEEEEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHH CS
   SecD_SecF  13 aekisvetvgpsvskelaekavlallialvliliyvalrFewrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvren 111
                 ++  ++++vgp v++el+++a+lal + l++il+yv++r+ew++alaa i  +hDv++++g+++++g e+d+  ++a Lti+GYS+n+ +v+ dr+re+
  CCG92502.1 573 FSLSRMDSVGPVVGEELKNRAALALSLGLLAILLYVSFRYEWSFALAAGIGQLHDVLLAIGLMAIFGKEFDMYLIGAFLTILGYSINEKIVISDRIRET 671
                 567899********************************************************************************************* PP

                 HHH--SS-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHHH CS
   SecD_SecF 112 lrkkkratlkeiinlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiasplllllk 187
                 l+ k+  t+keiin+++n+tL rti+t  t++l+ v++lllgg +++ f+la+l+G++ g++ss fi+ +ll++++
  CCG92502.1 672 LKYKSSLTFKEIINEGINKTLARTIMTGGTVVLATVSMLLLGGPVISVFSLAILIGVLGGMFSSHFISPALLYWFH 747
                 ************************************************************************9987 PP

>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2  12.8     9e-08   0.00041     343     498 ..     308     459 ..     294     484 .. 0.86
   2 !   10.3   6.7   2.2e-05     0.097     860    1009 ..     589     739 ..     585     749 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9e-08
                 HHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran 343 LvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialv 441
                  + +v+f+      a l++ ia+ + ll+ + +l+ + f+l l  + g+ l iG+ vD  + + E i  +le  g + ++a++ + ++  +a+  + ++
  CCG92502.1 308 FASVVLFMVFYYRLAGLVSIIALLVNLLLLLGLLAQFHFTLTLPGIAGIILTIGMAVDANVLIYERIRDELEV-GVPVRQAIFIGFNKAFSAIFDSNVS 405
                 4556666666666799*********************************************************.*************999988887776 PP

                 HHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHS---STT-C CS
    ACR_tran 442 llavflPilflgGveGklfrqfaltivlaillsvlvaltltPalcallLkerkeeke 498
                 l    +P ++l  +     + fa+t+vl i++ ++ al+l+  +  +lL+    +k 
  CCG92502.1 406 L---IIPSVILMELGSGPLQGFAVTLVLGIVANLFAALVLSRNVFEWLLSWGMLKKL 459
                 6...589999999999999*********************99999999987666655 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 2.2e-05
                  HHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.TTTTCHHHHH CS
    ACR_tran  860 asnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelre.kegksleeai 955 
                   +n++ + + l ll++ l   + ye +s +l+  +     ++ a+  + ++g+e++++ +  +++++G + +  i++ + ++e  + k  ++ +e i
  CCG92502.1  589 LKNRAALALSLGLLAILLYVSFRYE-WSFALAAGIGQLHDVLLAIGLMAIFGKEFDMYLIGAFLTILGYSINEKIVISDRIRETLKyKSSLTFKEII 684 
                  5677777788888888888888887.5555554444334444444445689*******9999*******************998762567899**** PP

                  HHHHHHCHHHHHHHHHHHHHHHHHHHCT-S.TTHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  956 leaakeRLrPiLMTalaailGvlPLalstg.aGselqqplgivvlgGlvtstvLt 1009
                   e+  + L   +MT  +++l  + ++l  g + s    ++ i+vlgG+++s +++
  CCG92502.1  685 NEGINKTLARTIMTGGTVVLATVSMLLLGGpVISVFSLAILIGVLGGMFSSHFIS 739 
                  ***********************988766626788899*************9976 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0  14.4   2.9e-08   0.00013     145     293 ..     298     441 ..     287     452 .. 0.89
   2 ?    0.8   0.4     0.041   1.8e+02     254     295 ..     593     635 ..     579     639 .. 0.85
   3 !    6.8   0.2    0.0006       2.7     243     304 ..     691     748 ..     662     757 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.9e-08
        MMPL 145 lklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeavira 243
                 +  i ++ ++ + v+L++v+   +a l+ ++  +v ll+ lgl  + +++  l+l   +    ++l+i+ ++D ++l+  R+r+el+ g   ++a+   
  CCG92502.1 298 VSGINAALAAFASVVLFMVFYYRLAGLVSIIALLVNLLLLLGL--LAQFHFTLTLPGIAG---IILTIGMAVDANVLIYERIRDELEVGVPVRQAIFIG 391
                 55567777888889999999999********************..667776666665554...56789******************************* PP

        MMPL 244 vastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlT 293
                 ++++ ++++ + + ++i  + L+ +  + l++++v++ lG++  ++++l 
  CCG92502.1 392 FNKAFSAIFDSNVSLIIPSVILMELGSGPLQGFAVTLVLGIVANLFAALV 441
                 **********************************************9985 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.041
        MMPL 254 aGltvaiamlg.LvvarlpvlaqvGvaialGvlvdvlivlTll 295
                 a+l + + +l+ L+ +++++  ++++a+++G l dvl+++ l+
  CCG92502.1 593 AALALSLGLLAiLLYVSFRYEWSFALAAGIGQLHDVLLAIGLM 635
                 55566666665588899999999****************9998 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0006
        MMPL 243 avastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGr 304
                 ++a+t    ++ G tv++a+++++++  pv++ + +ai +Gvl  ++ +  + PAll  + r
  CCG92502.1 691 TLART----IMTGGTVVLATVSMLLLGGPVISVFSLAILIGVLGGMFSSHFISPALLYWFHR 748
                 44444....346889999***************************99887777**9976655 PP

>> Sec_GG  SecD/SecF GG Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   4.1e-06     0.018       6      25 ..      52      71 ..      51      73 .. 0.89
   2 !    4.3   0.5    0.0065        29      10      17 ..     502     509 ..     502     509 .. 0.97
   3 ?    0.1   0.2      0.14   6.3e+02      15      25 ..     698     708 ..     698     709 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.1e-06
                C--EE-TTTS-EEEEEEEE- CS
      Sec_GG  6 kGlNLGlDFtGGthielqfd 25
                k+++LGlD++GGt ++l+ +
  CCG92502.1 52 KKIRLGLDLKGGTAFLLELQ 71
                789**********9998865 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0065
                 E-TTTS-E CS
      Sec_GG  10 LGlDFtGG 17 
                 LG+DF+GG
  CCG92502.1 502 LGVDFAGG 509
                 8******9 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.14
                 S-EEEEEEEE- CS
      Sec_GG  15 tGGthielqfd 25 
                 tGGt+++  ++
  CCG92502.1 698 TGGTVVLATVS 708
                 8*****98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.38
# Mc/sec: 5956.52
//
Query:       CCG92503.1  [L=140]
Description: Preprotein translocase subunit YajC [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-27   93.6   2.9    7.3e-27   93.1   2.9    1.3  1  YajC           Preprotein translocase subunit
     0.0038   17.5   2.3      0.019   15.2   0.1    2.1  2  Orf78          Orf78 (ac78)
     0.0061   17.3   1.2     0.0093   16.7   1.2    1.2  1  PCB_OB         Penicillin-binding protein OB-like domain
  ------ inclusion threshold ------
       0.13   11.1   0.7       0.15   10.9   0.7    1.1  1  Peptidase_M35  Deuterolysin metalloprotease (M35) family
       0.13   11.9   0.1       0.34   10.6   0.1    1.6  2  DUF4131        Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> YajC  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   2.9     2e-30   7.3e-27       3      78 ..      39     112 ..      36     114 .. 0.92

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 2e-30
        YajC   3 llplvlifvifyfllirpqqkkqkehkemlasLkkGdeVvtigGivGkvvkvdddevtveigesagvkikversai 78 
                 ++  +lif+ifyfllirpqqk++ke+++++asL+ Gd+V+t+gGi+G v++v++++v+++++e  +vki+v +sa 
  CCG92503.1  39 FVTTILIFGIFYFLLIRPQQKQKKEQEKLIASLETGDRVITSGGILGVVTNVKEKTVVIRVAE--NVKIEVLKSAL 112
                 34789*************************************************99*****64..6*******996 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   5.3e-06     0.019      72     101 ..      37      66 ..      35      68 .. 0.88
   2 ?    2.1   0.3     0.068   2.4e+02      13      44 ..     102     133 ..      97     139 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.3e-06
       Orf78  72 avvcvlvllyviyYfvilrerqkssvkeps 101
                 ++++  +l++ i+Yf+++r +qk+++++++
  CCG92503.1  37 TFFVTTILIFGIFYFLLIRPQQKQKKEQEK 66 
                 799999****************99987765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.068
       Orf78  13 kvdyIPLKLAlndldnddndkaenkkekksaa 44 
                 +v+   LK Al+ ++++ +++++++ke+k+++
  CCG92503.1 102 NVKIEVLKSALTTVTKTVKEEPKETKETKESK 133
                 55555699999999888888877766665544 PP

>> PCB_OB  Penicillin-binding protein OB-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.2   2.6e-06    0.0093      10      82 ..      56     130 ..      53     137 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.6e-06
                 T-SHCT..HHHHHHHCCTSSTC..TTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCC CS
      PCB_OB  10 lealaeadeealeealkklpds..gelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapks 82 
                 +++++++++e+l + l++ +++   +  ++vV++v+ek + + ++++ ++++  ++l+ + k+++++ +  + ++
  CCG92503.1  56 PQQKQKKEQEKLIASLETGDRVitSGGILGVVTNVKEKTVVIRVAENVKIEVLKSALTTVTKTVKEEPKETKETK 130
                 56667777777777777666444477889*****************************99998877654333333 PP

>> Peptidase_M35  Deuterolysin metalloprotease (M35) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.7   4.2e-05      0.15     123     186 ..      73     136 ..      63     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.2e-05
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EEES--THHH CS
  Peptidase_M35 123 GGavtirsdGfvpivtdgkvtGyipyksneleievdaakaaavtkalklldrrtkvascsgsre 186
                     G   i s G++ +vt+ k    +   +++++iev  +  ++vtk++k+  + tk+++ s +++
     CCG92503.1  73 TGDRVITSGGILGVVTNVKEKTVVIRVAENVKIEVLKSALTTVTKTVKEEPKETKETKESKDAK 136
                    45667999************999999******************************98877665 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   9.4e-05      0.34      28      86 ..      33      94 ..      16     122 .. 0.76
   2 ?   -0.7   0.0      0.27   9.7e+02      66      86 ..     110     130 ..      96     134 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.4e-05
     DUF4131 28 prrrvllllllllllallgfalrapqpnandlsqlles...gqevi....veGvvaslpeltgsgt 86
                p + ++++ ++l++ +++++++r +q+++++ ++l+ s   g  vi    + Gvv+++ e+    t
  CCG92503.1 33 PPPMTFFVTTILIFGIFYFLLIRPQQKQKKEQEKLIASletGDRVItsggILGVVTNVKEK----T 94
                677889999***************************999*977888344444444444443....3 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.27
     DUF4131  66 gqeviveGvvaslpeltgsgt 86 
                 +  ++v+ +v ++p+ t++++
  CCG92503.1 110 SALTTVTKTVKEEPKETKETK 130
                 567789999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1464  (0.0816554); expected 358.6 (0.02)
Passed bias filter:                      703  (0.0392102); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 989.80
//
Query:       CCG92504.1  [L=380]
Description: queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) (Guanine insertion enzyme) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.3e-131  436.1   0.0   1.2e-130  435.8   0.0    1.0  1  TGT       Queuine tRNA-ribosyltransferase


Domain annotation for each model (and alignments):
>> TGT  Queuine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.8   0.0  6.6e-135  1.2e-130       2     347 ..      15     376 ..      12     378 .. 0.97

  Alignments for each domain:
  == domain 1  score: 435.8 bits;  conditional E-value: 6.6e-135
                 TEEEEEEEETTEEEEESEEEEBETTSSBTTB-HHHHH.HTTES-EEEEHHHHHHTTTHHHHHHTTHHHHHHT--S-EEEE-SHHHHHHH...EEEESSE CS
         TGT   2 gaRlGklelphgtietPafmpvgtqgtvkgltpdelkeelgaqiilsntyhlelrpgeelvakagglhkflgwdkpiltdsggfqvfsl...kkiteeg 97 
                 +aRlG+l +phg+++tP+fmpvgt++tv+++ p++l+ + g+q++l+n yhl lrpg +++++agglhkf+gw+++iltdsggfqvfsl   +ki  eg
  CCG92504.1  15 KARLGRLFTPHGEVSTPCFMPVGTAATVRAVFPKDLE-KDGVQMVLANVYHLILRPGIQIIKEAGGLHKFMGWEGAILTDSGGFQVFSLssfCKILPEG 112
                 69**********************************6.66*************************************************8655****** PP

                 EEEE-TTTS-EEEE-HHHHHHHHHHHT-SEEE-------SS--HHHHHHHHHHHHHHHHHHHHHH..............SEEEEEE--TT-HHHHHHHH CS
         TGT  98 vsfqsridGskvlltpeesieiqeklgsDiimalddvvpspaskkrveksverTlrwldrcleah..............qalfgivqGglyedlreesa 182
                 v+f+s+idGs+ lltpe++i++q +lg+Di+m+ld+++p+p+++k + ++++rT+ w++  +e++               +lfgivqGg++++lr+ + 
  CCG92504.1 113 VRFKSPIDGSSLLLTPESVIDAQMELGADIVMSLDHCPPWPSKEKDLVEATRRTIGWAKMGKERWekhwgtkmverstnPMLFGIVQGGTKKELRQDCF 211
                 *************************************************************97666779********9666****************** PP

                 HHHHHH--SEEEE-SSSSSSHHHHHHHHHHHHGGGS-TTS-EEETTB-SHHHHHHHHHTT--EEEESHHHHHHHTTEEEETTEEEETTSGGGTT--SBS CS
         TGT 183 eelakrdfdgyaigGlsvgeekeellevveavtellpedkprylmGvgtPedlleavalGvDmfdcvyptrtarngraltsegelnlknakyaedfspl 281
                 eel k++fdg+aigGlsvge++ee l+++ea+ + ++++ p+y+mG+g+P +++++v lG+D+fdcv+ptr+ar+g a+++eg l+lkna++++d  p+
  CCG92504.1 212 EELLKIGFDGFAIGGLSVGEPQEESLKTIEALSPFMDSSYPKYVMGMGHPWQIIQMVDLGIDLFDCVLPTRLARHGSAYVEEGILHLKNARFKKDGLPI 310
                 *************************************************************************************************** PP

                 SSS--SHHHHH-BHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
         TGT 282 degCsCytCknytraylhhllktkemlgaiLltiHNlhyylelfkriReaIkegtfeefveefark 347
                 +e+CsCy+C++++ray+hhllk++e+lg +Ll++HNl +y++l+k++R +I +g+  ++ +++ +k
  CCG92504.1 311 EEKCSCYACRKFSRAYIHHLLKSQEILGIMLLSMHNLSFYNRLMKEMRLSIGNGQWIDMLTRWKNK 376
                 ******************************************************998888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2614.47
//
Query:       CCG92505.1  [L=43]
Description: hypothetical protein MFUM_700054 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 313.37
//
Query:       CCG92506.1  [L=342]
Description: Galactose-1-phosphate uridylyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-13   51.7   0.0    2.4e-13   50.9   0.0    1.4  1  GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-
      9e-11   41.2   0.0    0.00026   19.9   0.0    2.1  2  DUF4921          Domain of unknown function (DUF4921)
    8.4e-08   31.8   0.0    1.4e-07   31.1   0.0    1.3  1  DUF4931          Domain of unknown function (DUF4931)
     0.0011   18.7   0.0      0.002   17.9   0.0    1.4  1  GalP_UDP_tr_C    Galactose-1-phosphate uridyl transferase, C-
  ------ inclusion threshold ------
      0.099   13.4   0.0         26    5.6   0.0    2.8  3  HIT              HIT domain


Domain annotation for each model (and alignments):
>> GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   6.7e-17   2.4e-13      21     184 .]      12     177 ..       2     177 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 6.7e-17
  GalP_UDP_transf  21 gewvlvsphrtkrpwqgqqekiskdtlpekD...klkcyLcPgnsra..ngefnpky....kstfvftndFpalsedsnyikteaiaknilfka 105
                      ++wv+ sp+r++rp++    +  +++ +  D     k  L+P +  a     +++        + v  n++pal+ + +  ++    +  +f+ 
       CCG92506.1  12 NRWVVFSPERKQRPVEYTVVAQ-NNHREIFDafsWGKEKLTPHEVFAfrP--KDSPSdspgWLVRVVPNKYPALRIEGDLQAE----GIGMFDR 98 
                      6899999999999885555444.566666677774568999999888542..333320124457899*******999876655....4479*** PP

  GalP_UDP_transf 106 epayGrceviifsskheltladlspkdikavvaaWqektaelkakeypkcvlifENkGaamgvsnphPHgqiwaeehlp 184
                       +  G  evii ++++++ lad +++ +  v++a++e+  +l++  +++++lif NkG + g++  hPH+q+ a +++p
       CCG92506.1  99 MNGIGAHEVIIENPDPTVELADQTVEGVSLVLKAYRERILDLQQDIRFRYILIFKNKGRMAGATIIHPHSQLIALPIVP 177
                      ***********************************************************************99888776 PP

>> DUF4921  Domain of unknown function (DUF4921)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.1e-07   0.00041     217     301 ..     142     231 ..     119     274 .. 0.76
   2 !   19.9   0.0   7.2e-08   0.00026     352     392 ..     295     335 ..     278     341 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.1e-07
     DUF4921 217 rnryvrYvavfqnWLkpaGasfdhlhkqlvaiDergvqaeaeiarlrenPnl.....ynelavdyaakhnlviaendhavafagfGhryp 301
                 ++   rY+ +f+n  + aGa++ h h ql+a+  +  + +++i++++++ ++     + ++  +  ++ + ++ en    af     r+p
  CCG92506.1 142 QDIRFRYILIFKNKGRMAGATIIHPHSQLIALPIVPREVKEKIEQAKRHFEMkerslFADVLHEELSTGKRIVLENSFFAAFCPWASRFP 231
                 445679**********************************99999998776611111444444445555558888888888888888887 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 7.2e-08
     DUF4921 352 dvdvpmpwrilikwrvstlaGfeggtkiylntisPaelrdr 392
                  v+v  +w+i i  r+s laGfe g + ++n + P+e +d 
  CCG92506.1 295 AVEVDYRWHIEILPRISFLAGFELGSEFFINPVYPEEAADF 335
                 578899*****************************998775 PP

>> DUF4931  Domain of unknown function (DUF4931)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   3.9e-11   1.4e-07      54     125 ..     106     177 ..      99     198 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 3.9e-11
     DUF4931  54 tvlietdeceedistyseehlrellrfgvkhwlelekseeyksvllfknhGPlsGGsikhahmqivGlkeld 125
                  v+ie  + + ++++ + e +  +l+   ++ l+l+++ +++ +l+fkn G ++G +i h+h q++ l  + 
  CCG92506.1 106 EVIIENPDPTVELADQTVEGVSLVLKAYRERILDLQQDIRFRYILIFKNKGRMAGATIIHPHSQLIALPIVP 177
                 699***************************************************************997664 PP

>> GalP_UDP_tr_C  Galactose-1-phosphate uridyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.5e-07     0.002       6     109 ..     188     289 ..     182     338 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.5e-07
                    HHHHHHH.SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EEEEEE CS
  GalP_UDP_tr_C   6 ekYfagsngsillhdyvqmelaekervvelkdsflavvpylakWPfevlllrkaevkslaeladeekedlaailkklarkydnlfetsfeysmGlh 101
                    ++ f  + +  l++d ++ el   +r+v ++  f a  p+   +Pfe  +++k      + l d++ + l  il++l+++     e   +y + l 
     CCG92506.1 188 KRHFEMK-ERSLFADVLHEELSTGKRIVLENSFFAAFCPWASRFPFESWIMPKFSSLDFSSLDDNQIMLLSDILQNLLKRLKKGLEN-PDYNLVLQ 281
                    4444444.689*********************99********************************************998887774.46777777 PP

                    ---SCCCT CS
  GalP_UDP_tr_C 102 qaplnaee 109
                    +apl +  
     CCG92506.1 282 TAPLRSSR 289
                    77776655 PP

>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0072        26      28      91 ..     105     169 ..      97     174 .. 0.86
   2 ?    4.5   0.0     0.016        57       7      77 ..     212     282 ..     206     285 .. 0.88
   3 ?   -4.1   0.0         5   1.8e+04      25      34 ..     300     309 ..     297     314 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0072
                 EEEEEESS.TGCSGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEE CS
         HIT  28 hlLvipkk.hlselhdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiH 91 
                 h  +i +   + el d t e ++ +l+a ++   +lq++++ + + +++n+g+ ag ++ h H  
  CCG92506.1 105 HEVIIENPdPTVELADQTVEGVSLVLKAYRERILDLQQDIRFRYILIFKNKGRMAGATIIHPHSQ 169
                 5567777767888999999999999999999999***************************9965 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.016
                 CEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEE CS
         HIT   7 tvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkfknkglrvvinn 77 
                 ++v+e+  + af    ++ p    ++pk    ++++l+++ ++ l  + + + k l+k ++n  +++v ++
  CCG92506.1 212 RIVLENSFFAAFCPWASRFPFESWIMPKFSSLDFSSLDDNQIMLLSDILQNLLKRLKKGLENPDYNLVLQT 282
                 6777777788888888888888899****************************************999876 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 5
                 SSSEEEEEES CS
         HIT  25 apghlLvipk 34 
                 +++h+ ++p+
  CCG92506.1 300 YRWHIEILPR 309
                 6789989888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2648.34
//
Query:       CCG92507.1  [L=718]
Description: Alpha-amylase/alpha-mannosidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-58  197.2   0.6    5.2e-58  196.8   0.6    1.1  1  Glyco_hydro_57  Glycosyl hydrolase family 57


Domain annotation for each model (and alignments):
>> Glyco_hydro_57  Glycosyl hydrolase family 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.8   0.6   2.9e-62   5.2e-58       2     322 ..       5     429 ..       4     432 .. 0.88

  Alignments for each domain:
  == domain 1  score: 196.8 bits;  conditional E-value: 2.9e-62
                     EEEEE-----TTS-SSSSSHHHHHHHHHHTHHHHHHHHHHHHHTT----EEEEE-HHHHHHHT-HHHHHH......................... CS
  Glyco_hydro_57   2 fvfhqHqplykkpgkgeytlpwvrehaaedYiklalilekfpkvhvtfeLsgsLiaqLeeylngekksyl......................... 71 
                     + +h+Hqp y +++++    pwvr+h + +Y++++ + e+fp ++  f+++++L++q+e+ ++ e k +                          
      CCG92507.1   5 LLWHMHQPDYIDHSTNVALMPWVRLHSVHSYLDMLEMVERFPGLKTIFNFTPVLLEQIEKLVQKEAKDFVeiltripateltpiqkqkilenffk 99 
                     68***************************************************************999999******999999999999996666 PP

                     ..........HHHHHHHHHHHHHHHH---HH........................HHHHHHHHHHHHHHHHH....................... CS
  Glyco_hydro_57  72 ..........pateellelieeglerctelk........................ldlavlfnlaisgplle....................... 109
                               p + el                                       ld +v +nl ++g+  +                       
      CCG92507.1 100 anyetmirpiPRYYEL--------------LqrrgkvvnyarleeltslfspqdyLDIQVFYNLVWCGYAARkqypflnelrkqggnyteeqkee 180
                     6666666555444444..............34444444455566888************************************************ PP

                     ..HHHHT.TT-HHHHHHHHHHCTSEEEEEE-TT-B-GGG-...................S-HHHHHHHHHHHHHHHHHHHSS--SBEE-GGG-B- CS
  Glyco_hydro_57 110 ..qiqkwlnkevlelfrelqesgqvElltspyyHpllpll...................pdsedieaqvkkarelyeeyfgqePrgfwlpElavs 183
                        i+  + + ++++++   ++gq+E++tsp+yHp+lpl+                   +  ed   q+k+++e +++ fg+ +rg+w++E +v 
      CCG92507.1 181 llKIHHSILSSIIPKYKMALDRGQIEITTSPFYHPILPLIydtnfarrcmpyvnlpsqfKAPEDALNQLKLGQEKMKSVFGRPARGLWPSEGSVC 275
                     **888889********************************99999999999988876664489******************************** PP

                     -SHHHHHHHTT--EEEE-C..........-----------..-TTS-EE-TTS...-EEEE--CHH-TTTSGGG-............TTSB.... CS
  Glyco_hydro_57 184 peileilaelGfeylftde..........laeiledkske..spyrpyllkngg..iavffRdreLsddigFryseqypleavddfinwlkkvkk 264
                     pe+l++++e+Gf+y+ftde               ++k ++   ++  ++++ ++  +  +fR+r Lsd igF+ s+  p +a++ ++  l+++ k
      CCG92507.1 276 PELLPLFKEAGFDYFFTDEsilfrsleldP--HWRGKHEDhlLLFQGWRVELPEasLCALFRERPLSDFIGFKASQNDPGQAANFLLHSLENTCK 368
                     *********************999988542..33333222456666666666666699*****************98899888888888887777 PP

                     .........-TT---TT.T--BB-TT-S---HHHHHHHHHHHHHHHHHHHHHHHHHSS-EEE CS
  Glyco_hydro_57 265 a...ksevvtialdgEn.wghypetgkkeFleklyeeleenglielvtpsefikklkpkgli 322
                         k+  v+ialdgEn w+ ++  g+  Fl+ +y+ l e+  +++ + se++++++p  ++
      CCG92507.1 369 HidpKRGAVLIALDGENaWESFNDGGEA-FLSSFYRGLVEHRNLKTTLASEYFDTYPPANTV 429
                     78999*********************97.*******9999999***********99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 4760.90
//
Query:       CCG92508.1  [L=680]
Description: Alpha-amylase/alpha-mannosidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-65  221.4   0.0    5.8e-50  170.5   0.1    2.2  2  DUF1926          Domain of unknown function (DUF1926)
    4.9e-33  114.7   1.8      8e-33  114.0   1.8    1.2  1  Glyco_hydro_57   Glycosyl hydrolase family 57
    2.2e-17   63.1   0.2    4.7e-17   62.1   0.2    1.6  1  DUF1925          Domain of unknown function (DUF1925)
    3.1e-06   26.8   0.0    5.3e-06   26.0   0.0    1.3  1  Glyco_hydro_38N  Glycosyl hydrolases family 38 N-terminal dom


Domain annotation for each model (and alignments):
>> DUF1926  Domain of unknown function (DUF1926)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   1.4e-16   6.3e-13       1      56 [.     407     462 ..     407     465 .. 0.95
   2 !  170.5   0.1   1.3e-53   5.8e-50      86     281 .]     465     673 ..     463     673 .. 0.93

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1.4e-16
     DUF1926   1 DfdlDgreEvlleseklvavlkpaqGGsliElddrkkefNllntLtRrpEaYHeki 56 
                 Dfd+D+ +E++l+s+ ++++++p +GGs++E++++++++Nl+ntL+R+p ++ e +
  CCG92508.1 407 DFDADKFPEIFLRSSHCSLCIEPLYGGSITEFNFLPTSYNLANTLQRHPCYFPEPV 462
                 9***********************************************99988765 PP

  == domain 2  score: 170.5 bits;  conditional E-value: 1.3e-53
     DUF1926  86 keLvyDwyerkslvDhfldeeltlesfvqgelkeegDFanqpye.iekk....kvevvlkrdGgvy....kkeitlrKeytleekseleveyeltnesk 175
                 ++++ Dw++r++++Dhf++ ++++++f+++++ e+gDF+nqpy  +e        +vvl+r+Gg+y     +++t+rKey l++++el+v+y++tn+++
  CCG92508.1 465 DMYIEDWHQRTLFLDHFVPLSTSAYDFANSSFLEYGDFVNQPYTiVELVqnakGLSVVLERNGGLYfinkMFHFTIRKEYLLSPQGELQVNYTITNNDT 563
                 57899***************************************555447888899************99999************************** PP

     DUF1926 176 e.iellfavElNlallaleaddrylllndkklgeeleleev..kefeleDevlkkklele.lsepaelwafPveTVSqsekgfelvyQgvavvllwpvd 270
                   iell+++E+N+++l++++ dry+l++dkkl+  + +ee   +e++++D++ +   +    +ep+++++fP++TVS++++ f + yQg+++ +l+ ++
  CCG92508.1 564 VpIELLYCCEINYSILSVDSLDRYILIKDKKLNPGMIFEEEqvSEWTIYDKTRNLAWQWIlPEEPLQIYHFPIYTVSYERGLFAKDYQGSTFEILKSFH 662
                 ***********************************96665555*********888877542699*********************************** PP

     DUF1926 271 lkekeewklkl 281
                 l++ke+++lk+
  CCG92508.1 663 LQPKEKMTLKI 673
                 ******99986 PP

>> Glyco_hydro_57  Glycosyl hydrolase family 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   1.8   1.8e-36     8e-33      86     314 ..      39     262 ..      21     272 .. 0.85

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 1.8e-36
                     HH---HHHHHHHHHHHHHHHHHHHHHHHT.TT-HHHHHHHHHHCTSEEEEEE-TT-B-GGG-S-HHHHHHHHHHHHHHHHHHHSS--SBEE-GGG CS
  Glyco_hydro_57  86 erctelkldlavlfnlaisgplleqiqkwlnkevlelfrelqesgqvElltspyyHpllpllpdsedieaqvkkarelyeeyfgqePrgfwlpEl 180
                     +++++++   +v ++l++sg +l ++q++   ev+el+++l+ ++q+Ell+ ++y+p++ +l+  ed   q++k + +++++fgq+P+g+wl+E+
      CCG92508.1  39 QSIRDHP---QVRLSLHFSGNYLVYLQEN-EIEVIELIQKLITEKQIELLGGGFYEPIFCYLSN-EDSLLQLEKLNRFLKNTFGQSPKGVWLAES 128
                     4455555...888****************.**********************************.****************************** PP

                     -B--SHHHHHHHTT--EEEE-C...------------TTS-EE-TTS...-EEEE--CHH-TTTSGGG-............TTSB.......... CS
  Glyco_hydro_57 181 avspeileilaelGfeylftde...laeiledkskespyrpyllkngg..iavffRdreLsddigFryseqypleavddfinwlk.kvkkaksev 269
                     +++p  +e+l   G++y++ ++   +++   ++ +++p+   +    +  i vf+ +   s++i+F+          +d+   +   ++++  ++
      CCG92508.1 129 IWEPYFVELLCRSGYQYTILEDslfENAGITPAEIKQPFLTQFN---QhaIHVFAYHSSFSKEIPFK--------DIKDIHSSFVqISHREGMQL 212
                     **********************7763333344435566655554...444****************7........344444444314556699** PP

                     .-TT---TTT--BB-TT-S---H.HHHH...HHHHHH.HHHHHHHHHHHH CS
  Glyco_hydro_57 270 vtialdgEnwghypetgkkeFle.klye...eleeng.lielvtpsefik 314
                     + ia +gE +g +p t ++++ +  l+    +le+n+ +i++ +psefi+
      CCG92508.1 213 LCIAQNGELYGFWPDTREQIYHRgRLENwlqYLENNAsWIQTRLPSEFID 262
                     ********************98888877777999999***********97 PP

>> DUF1925  Domain of unknown function (DUF1925)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.2   1.1e-20   4.7e-17       1      79 [.     314     391 ..     314     392 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 1.1e-20
     DUF1925   1 GiwknFlvkYeesnemhkrmlevskklkklaskkeaeealeallraqandaYWhGlFGGiYlphLRravyenlikaeal 79 
                 G w  Fl+kY+e+n++hkrml+vs+k++ l +k+ +ee+ ++ll +q+  +YWh    G++  ++R  ++ +++kae++
  CCG92508.1 314 GHWLTFLSKYPEANHIHKRMLQVSAKIRLL-PKEFQEEIFDCLLASQGHTVYWHAFKDGLFGNYIRDSAFYHILKAEKM 391
                 889*************************99.788999***************************************986 PP

>> Glyco_hydro_38N  Glycosyl hydrolases family 38 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.2e-09   5.3e-06      30     121 ..      34     125 ..       7     128 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.2e-09
                      HHHHHHHHHHSTT--EEES-CHHHHHHHCCS-CCCHHHHHHHHHCTSEEECTT-SS-B-SSSS-HHHHHHHHHCCCHHHHCCH--EESEEEE CS
  Glyco_hydro_38N  30 lssvlellerdpdrkFilseaslferwweeapeekkelvkklvaegrlevvgGgwvenDealpsgeslirqlleGqrflkeefgvrpkvaWl 121
                          l+ ++++p+++  l     +  + +e++ e  el++kl++e+++e+ gGg+ e+     s e+ + ql + +rflk++fg++pk +Wl
       CCG92508.1  34 TLPFLQSIRDHPQVRLSLHFSGNYLVYLQENEIEVIELIQKLITEKQIELLGGGFYEPIFCYLSNEDSLLQLEKLNRFLKNTFGQSPKGVWL 125
                      444577777777777755555555556666666666666****************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 4627.76
//
Query:       CCG92509.1  [L=139]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1106.94
//
Query:       CCG92510.1  [L=80]
Description: hypothetical protein MFUM_700060 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 594.68
//
Query:       CCG92511.1  [L=375]
Description: hypothetical protein MFUM_700061 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-23   83.6   0.4    7.9e-23   81.7   0.4    1.9  1  AAA_21      AAA domain, putative AbiEii toxin, Type IV TA sys
    1.4e-20   74.3   0.7    6.3e-11   42.6   0.0    2.3  2  AAA_15      AAA ATPase domain
    1.8e-10   41.7   0.2    4.3e-10   40.4   0.2    1.6  1  AAA_23      AAA domain
    1.2e-09   37.9   0.0    2.1e-05   24.0   0.1    2.2  2  SMC_N       RecF/RecN/SMC N terminal domain
    4.6e-06   27.2   0.0    0.00013   22.5   0.0    2.2  2  ABC_tran    ABC transporter
    3.8e-05   23.1   0.0      0.041   13.1   0.0    2.2  2  DUF2813     Protein of unknown function (DUF2813)
    8.3e-05   22.3   0.0    0.00019   21.1   0.0    1.6  1  AAA_29      P-loop containing region of AAA domain
     0.0001   21.2   0.3      0.087   11.5   0.0    2.1  2  AAA_13      AAA domain
     0.0014   18.2   0.0     0.0023   17.5   0.0    1.3  1  AAA_27      AAA domain
      0.002   18.5   0.0     0.0067   16.8   0.0    1.8  2  AAA         ATPase family associated with various cellular ac
  ------ inclusion threshold ------
      0.022   15.0   0.0       0.47   10.7   0.0    2.2  2  AAA_22      AAA domain
       0.13   11.0   0.0        0.2   10.4   0.0    1.2  1  ABC_ATPase  Predicted ATPase of the ABC class


Domain annotation for each model (and alignments):
>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.4   5.3e-26   7.9e-23       1     302 [.      24     324 ..      24     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 5.3e-26
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqveeklssvetllesgll 99 
                 +n+++G+N++GKS++L+a+++++            ++g+ ++  + + +++y  +++f+f+      +++    +++++++q          + ++ + 
  CCG92511.1  24 INIITGDNAAGKSTILEAIYIACK----------PNPGTIQWLTQHRVPPSYLQKEAFAFSMG-RYFNDPTSPISFQVDKKQA---------GSSKNWC 102
                 79********************97..........577778999999*****************.99999**************.........9****** PP

      AAA_21 100 ldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrke.......rigllnifadyfgfakekrllqrlvrs 191
                 ++    + +d++ p +  ++  +     k+++v+   +++++  ++++  + +  +++ ++++            +  i+ ++f+f +        +++
  CCG92511.1 103 VKLILHRLYDFSTPSYTPAFQEEAFSPPKTSNVNLGYNPEHVLPRLEFHIQEDNKNPEENWIGFIgnkmvqdGVIFKAIVPNTFFFGSPV-----IYDP 196
                 *****************************************9999999999999999999999999974444333333333333333333.....4444 PP

      AAA_21 192 lklveielsdlgegeeliasvderlrer................gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkl 274
                 +  + i   +++++ee+i++ ++   +                  v+f+ ++    +++   S+Gt + l +l++ ++ +++ +++l+DE+Eng+H ++
  CCG92511.1 197 SASAKILSAFIEKKEESIFLDAFKKEYPevtdifplvtpdfplgAVFFEIKDPNIRISSPLYSSGTHKSLTILLIAADSRSSQGIILVDEIENGIHWSR 295
                 444445555555555566666666555589999**********9999999999999999999*******************99**************** PP

      AAA_21 275 lrrllellkelsr.ngaQviltTHSplll 302
                 + +l++ll++ ++ n +Qv++tTHS ++l
  CCG92511.1 296 MNSLWRLLNDFTTkNQIQVFATTHSYECL 324
                 ********666666***********9987 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   4.2e-14   6.3e-11       1      45 [.       1      44 [.       1     100 [. 0.92
   2 !   30.3   0.1   2.2e-10   3.4e-07     290     366 ..     251     321 ..     197     324 .. 0.74

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 4.2e-14
      AAA_15  1 MkIkkikikNFRslkdveid.lseeltvliGkNnsGKSsilealdl 45
                M I+++ki NFR++kd  ++ ls  ++++ G N++GKS+ilea+++
  CCG92511.1  1 M-INSLKITNFRCFKDLALEgLSR-INIITGDNAAGKSTILEAIYI 44
                8.9*************88884666.*******************98 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 2.2e-10
      AAA_15 290 eelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHSp 366
                  +++    +sG+   l ++l  ++ +        + i+l++E+E+ +H +  ++l++ll +   +n+ Qv+ tTHS 
  CCG92511.1 251 IRISSPLYSSGTHKSLTILLIAADSRSS------QGIILVDEIENGIHWSRMNSLWRLLNDFTTKNQIQVFATTHSY 321
                 4444555678888888887777777777......99******************************99********6 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.2   2.9e-13   4.3e-10       1      42 [.       4      45 ..       4      50 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 2.9e-13
      AAA_23  1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAikla 42
                +Lki nfr+f+d  ++  + +++ItG+N aGK+Til+Ai  a
  CCG92511.1  4 SLKITNFRCFKDLALEGLSRINIITGDNAAGKSTILEAIYIA 45
                69************************************9665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   1.4e-08   2.1e-05       1      46 [.       1      43 [.       1      49 [. 0.92
   2 !   12.2   0.0   6.1e-05     0.092     138     204 ..     260     326 ..     105     341 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.4e-08
                EEEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  1 vlkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilF 46
                ++++l+i+nF+ +  k   l+  +++++i+G N +GKs +l+Ai +
  CCG92511.1  1 MINSLKITNFRCF--KDLALEGLSRINIITGDNAAGKSTILEAI-Y 43
                6899*********..6899999999*******************.4 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 6.1e-05
                 -HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 138 SgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislreemlek 204
                 Sg  k+L+   Ll+A  + + + + l+Dei+  +  ++++ + +ll+  +++++ Q++ ++++ e le 
  CCG92511.1 260 SGTHKSLTI--LLIAADSRSSQGIILVDEIENGIHWSRMNSLWRLLNdfTTKNQIQVFATTHSYECLEY 326
                 555566654..56799*******************************5555666899999998887765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   8.6e-08   0.00013      14      48 ..      25      59 ..      19     156 .. 0.78
   2 ?    2.5   0.0      0.13   1.9e+02      20      51 ..     260     289 ..     259     357 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 8.6e-08
                EEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpteGeilldgkd 48
                  i+G+n aGKSt+l++++   kp+ G+i++  ++
  CCG92511.1 25 NIITGDNAAGKSTILEAIYIACKPNPGTIQWLTQH 59
                5799*************************887332 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.13
                 TTSSHHHHHHHHTTSS--SEEEEEETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  20 nGaGKStLlkllagllkpteGeilldgkdlke 51 
                 +G+ KS  + l+a  ++  +G il+d+  +++
  CCG92511.1 260 SGTHKSLTILLIAADSRSSQGIILVDE--IEN 289
                 7888*******************9984..333 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.8e-05     0.041       4      48 ..       3      48 ..       1      59 [. 0.87
   2 !    7.9   0.0    0.0011       1.6     280     325 ..     275     324 ..     265     331 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.8e-05
     DUF2813  4 erieisGFRGinrLSls.leentvLiGENaWGKSSLldALslilnv 48
                +++ i+ FR  + L l+ l++ +++ G+Na GKS +l+A+ ++ ++
  CCG92511.1  3 NSLKITNFRCFKDLALEgLSRINIITGDNAAGKSTILEAIYIACKP 48
                678899**********7699*******************9987665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0011
     DUF2813 280 kriarPilllEdpearLHPtmlaiaWellellP....lQkiltTNSveLl 325
                 +r ++ i+l++++e+ +H   +  +W+ll+ +     +Q  +tT S e l
  CCG92511.1 275 SRSSQGIILVDEIENGIHWSRMNSLWRLLNDFTtknqIQVFATTHSYECL 324
                 577899***********************987522226778888888876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.2e-07   0.00019       3      49 ..       4      49 ..       2      54 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.2e-07
      AAA_29  3 rlqlvNWgtfdghtieidlkgatlltGpsGsGKSTllDAiqalLvpa 49
                +l++ N   f++  +e   + + ++tG++ +GKST+l Ai +   p+
  CCG92511.1  4 SLKITNFRCFKDLALEGL-SRINIITGDNAAGKSTILEAIYIACKPN 49
                677777777777544443.3479****************98776665 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   5.8e-05     0.087       7      36 ..      13      42 ..       6      57 .. 0.83
   2 !    7.9   0.1   0.00071       1.1     558     604 ..     308     353 ..     294     370 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.8e-05
      AAA_13  7 frgaeledfkriNliYGwNGaGKTtLSrll 36
                f++  le ++riN+i G N aGK+t+ +++
  CCG92511.1 13 FKDLALEGLSRINIITGDNAAGKSTILEAI 42
                44788999*****************96655 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00071
      AAA_13 558 kkkakQlfiLTHnleffkevkkntkrkrkkkeesfyllkksqksski 604
                  k+  Q+f  TH+ e++ ++ + +k++  k++e++++++k+++++ +
  CCG92511.1 308 TKNQIQVFATTHSYECLEYFVDVMKES-GKETEFTIIHAKKDRKTNM 353
                 57778******************9954.4446666777777776665 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.6e-06    0.0023       3      46 ..       2      42 ..       1      44 [. 0.86

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.6e-06
      AAA_27  3 lerLdLeryGkftdrsldfsaeeadlhliyGpNEAGKstalrAi 46
                +++L+++ +  f+d  l+   + +++ +i G N AGKst+l+Ai
  CCG92511.1  2 INSLKITNFRCFKDLALE---GLSRINIITGDNAAGKSTILEAI 42
                678899999999886665...5689******************8 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         3   4.5e+03       3      19 ..      27      43 ..      26      55 .. 0.80
   2 !   16.8   0.0   4.5e-06    0.0067      23     115 ..     240     324 ..     224     332 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3
                EESSTTSSHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakava 19
                ++G    GK+++ +a+ 
  CCG92511.1 27 ITGDNAAGKSTILEAIY 43
                5788889*****99986 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 4.5e-06
                 THEEEEEETTTCS.SS..STTHHHHHHHHHHHHHHHTSTSEEEEEETGGG.HHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGS CS
         AAA  23 gvefleisgsell.sk..yvgesekkirelfkeakekakpsilfiDEida.laksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkl 115
                 g+ f+ei+ ++++ s+  y + + k++  l+ +a + +++ i+++DEi++ ++ sr           +n L + l+++++k +++ v ++t++++ l
  CCG92511.1 240 GAVFFEIKDPNIRiSSplYSSGTHKSLTILLIAADSRSSQGIILVDEIENgIHWSR-----------MNSLWRLLNDFTTK-NQIQVFATTHSYECL 324
                 5668999999999666889999999999999999888867********98366677...........*************7.559999999987655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.17   2.5e+02       7      24 ..      24      41 ..      20      44 .. 0.87
   2 ?   10.7   0.0   0.00031      0.47      82     128 ..     269     315 ..     202     324 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.17
      AAA_22  7 ilvvtGesGtGKTtllrr 24
                i ++tG   +GK+t l+ 
  CCG92511.1 24 INIITGDNAAGKSTILEA 41
                668***********9976 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00031
      AAA_22  82 leqalraravielliiDEaqh.lrseealeeLrsllnlsrkgvqliLv 128
                 l  a+++r+ ++++++DE+++ + +   ++ L +lln+ +++ q+ ++
  CCG92511.1 269 LLIAADSRSSQGIILVDEIENgI-HWSRMNSLWRLLNDFTTKNQIQVF 315
                 333344444467*********99.999999999999994444444444 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00014       0.2     246     265 ..      24      43 ..      14      48 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
                 EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 246 vtlIvGggfhGKsTLLeAle 265
                 + +I+G ++ GKsT+LeA+ 
  CCG92511.1  24 INIITGDNAAGKSTILEAIY 43 
                 899***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2573.97
//
Query:       CCG92512.1  [L=204]
Description: hypothetical protein MFUM_700062 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.063   13.6   0.1       0.23   11.8   0.0    1.9  2  NLRC4_HD       NLRC4 helical domain
        0.1   12.7   0.1       0.61   10.2   0.0    1.9  2  vWA-TerF-like  vWA found in TerF C terminus


Domain annotation for each model (and alignments):
>> NLRC4_HD  NLRC4 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.6e-05      0.23      30      85 ..      85     135 ..      76     159 .. 0.72
   2 ?   -1.3   0.0       0.3   2.7e+03       8      19 ..     169     180 ..     161     197 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.6e-05
                 CCC--TTCHHHHHHHHHHTTSSSTHHCHCHT--SGGCCHCHHHHHHH.HHHHHHHH CS
    NLRC4_HD  30 tcgsstkAgpkivshLlalvdekeslenlsendeylkhtpelellkailirslvel 85 
                 +   s k  p+i  hLl  +d+k+sle l  +    +++pe+e     +ir + ++
  CCG92512.1  85 CEVASNKGYPAIKIHLLPDCDKKGSLETLCYKVM-KEQHPEIEA----CIRNFAQC 135
                 345799999*****************98764433.345566554....55555555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.3
                 HHHCTT-SHHHH CS
    NLRC4_HD   8 syLkqinsilki 19 
                 +yL++ n++ ++
  CCG92512.1 169 YYLQETNTSFNF 180
                 678887777655 PP

>> vWA-TerF-like  vWA found in TerF C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   6.9e-05      0.61      75     132 ..      15      70 ..       3      73 .. 0.75
   2 ?    0.5   0.0     0.064   5.8e+02      37      67 ..     104     136 ..      98     200 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.9e-05
  vWA-TerF-like  75 lelkklggvneeapvleevlekvrkepaelptlvlFitDGgvkkkkeiekalreaske 132
                     e+++++g+ + + + ++ + +++    ++p l+lFi D g++ kk  e+++ + s+e
     CCG92512.1  15 YEVRSAKGIDKFPVMFNSAIVNYK--DITKPNLILFIADAGADPKKTFENLVAQLSNE 70 
                    455666665666666666777777..5566********************99998876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.064
  vWA-TerF-like  37 lDddgelevwlfaskakrlpdvt..ladleeyv 67 
                     D  g+le+  ++   ++ p+++  ++++++ +
     CCG92512.1 104 CDKKGSLETLCYKVMKEQHPEIEacIRNFAQCT 136
                    588899999999988888888762234444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1442.12
//
Query:       CCG92513.1  [L=149]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-44  150.8   0.0    2.7e-44  150.6   0.0    1.0  1  DUF5069   Domain of unknown function (DUF5069)


Domain annotation for each model (and alignments):
>> DUF5069  Domain of unknown function (DUF5069)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.0   1.5e-48   2.7e-44       1     132 [.      10     142 ..      10     143 .. 0.99

  Alignments for each domain:
  == domain 1  score: 150.6 bits;  conditional E-value: 1.5e-48
     DUF5069   1 keapRSprerlgglvilpRliDKvRlhaaGklgeYvynctlDarllsFlgidpealreavlsgksDeeilawvkenak.prsaeeieeWnkslekrgpk 98 
                 +++pRSpr++lgg+v+lpR+iDK R+ ++Gk+geY+ync++D++l+sFl+i+++++ e+++++ sD+e+l+++ + +  + + ++ie+W+  l+++gp 
  CCG92513.1  10 QHPPRSPRVQLGGFVLLPRVIDKGRALLKGKIGEYKYNCPMDQKLFSFLQINEKQFLEILSKTSSDKEVLKEILKISPlSLAFWQIENWSSVLQRSGPS 108
                 699***************************************************************************9999***************** PP

     DUF5069  99 daesqalfqsalekvapkrddittwfdlidldeg 132
                 d +s+++f   le++ap+r+di++wfdl+dld++
  CCG92513.1 109 DLDSKKFFVTSLEQIAPDREDIVSWFDLLDLDDY 142
                 ********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1069.17
//
Query:       CCG92514.1  [L=263]
Description: Cytochrome c oxidase subunit 2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.3e-12   45.1   0.0    1.4e-11   44.3   0.0    1.3  1  COX2          Cytochrome C oxidase subunit II, periplasmic do
    9.5e-06   25.7   0.0    1.9e-05   24.7   0.0    1.5  1  Cupredoxin_1  Cupredoxin-like domain
  ------ inclusion threshold ------
      0.043   14.0   0.1      0.076   13.2   0.1    1.4  1  COX2_TM       Cytochrome C oxidase subunit II, transmembrane 


Domain annotation for each model (and alignments):
>> COX2  Cytochrome C oxidase subunit II, periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   2.4e-15   1.4e-11       2     114 ..     107     227 ..     106     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 2.4e-15
        COX2   2 tikaiGhqwywsyeytdfed..lefdsylvpe......edleegelrllevdnrvvlpvetkirllvtaedvlhsfavpslgvkvdavpGrlnqvslli 92 
                 +++ai +q+ w ++y+       + d +l++       ++ + ++   + + n++ +pv +++ +++ ++dv+h+f v  + ++ da+pG    ++++ 
  CCG92514.1 107 VVEAIAQQFGWLFHYPGADGklGKRDNFLIDPmnpiglDKTDPASKDDIVTMNEMHVPVGKPLLVQIGSKDVVHNFYVIQMRIQRDAIPGLTIPLWFTP 205
                 789999999999999876555446677777541111113344455557888999********************************************* PP

        COX2  93 dreGvfyGqcselcGvnhssmp 114
                  ++G f   c +lcGv h +m 
  CCG92514.1 206 IKTGRFEIACGQLCGVGHFAMK 227
                 ******************9985 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   3.2e-09   1.9e-05      28     104 .]     152     232 ..     149     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 3.2e-09
  Cupredoxin_1  28 kdggfePskievkagekvklkiknkdktpeefesedlgeekvlapgktttitiaplkpGeYeftcd....mhmd.akGkliV 104
                   kd+ ++ ++++v+ g+++ ++i  kd  +++f++ +++++ +  pg t  ++++p k G++e++c+       + +kG l+V
    CCG92514.1 152 KDDIVTMNEMHVPVGKPLLVQIGSKD-VVHNFYVIQMRIQRDAIPGLTIPLWFTPIKTGRFEIACGqlcgVGHFaMKGYLVV 232
                   77888899***********9999887.58************************************97655555778999988 PP

>> COX2_TM  Cytochrome C oxidase subunit II, transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.3e-05     0.076      12      59 ..      14      61 ..       6      87 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
     COX2_TM 12 aasplmeeleelhdyilliltlililVlyilvlilvefrrrknkitak 59
                 a+ + ++++++ + il ++++++++ +  +v+ lv+f+++k++ ++ 
  CCG92514.1 14 NAAEHGHQVDQFMELILWFMLILFVIWFSFFVYSLVKFNSKKHPKANY 61
                556667899999999999999999999999*************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1041  (0.0580624); expected 358.6 (0.02)
Passed bias filter:                      786  (0.0438396); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2122.20
//
Query:       CCG92515.1  [L=94]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.3   0.1      0.013   15.3   0.1    1.4  2  LapA_dom  Lipopolysaccharide assembly protein A domain
      0.029   14.9   0.0      0.033   14.7   0.0    1.2  1  DUF1240   Protein of unknown function (DUF1240)


Domain annotation for each model (and alignments):
>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       1.1   9.6e+03      30      35 ..      10      15 ..       6      17 .. 0.54
   2 ?   15.3   0.1   1.4e-06     0.013      20      61 ..      39      80 ..      33      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.1
    LapA_dom 30 Gallgw 35
                G+ll++
  CCG92515.1 10 GLLLAL 15
                444443 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.4e-06
    LapA_dom 20 sllllvafgiGallgwllslwsylrlrrelrrlkkkikklek 61
                  +l++  ++G+++g+++s++ ++  + ++ +++++++++ k
  CCG92515.1 39 PAVLFLLGLLGVVFGLFISFFIKMNRKEAALEQERQVEDATK 80
                568889999************999999999999999988765 PP

>> DUF1240  Protein of unknown function (DUF1240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.7e-06     0.033      35      71 ..      31      67 ..       6      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.7e-06
     DUF1240 35 lakvndklvkllaiiailsfvlslflslYvdyklkse 71
                 + ++ +l  +l+++ +l++v+ lf+s++++++ k++
  CCG92515.1 31 SPATKGMLPAVLFLLGLLGVVFGLFISFFIKMNRKEA 67
                455777888999******************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      666  (0.0371465); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 669.51
//
Query:       CCG92516.1  [L=119]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0015   18.6   0.0     0.0019   18.2   0.0    1.2  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
     0.0055   16.8   0.0       0.02   15.0   0.0    1.8  2  DUF2615          Protein of unknown function (DUF2615)
     0.0062   17.1   0.8     0.0079   16.7   0.8    1.1  1  Colicin_K        Colicin-K
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.013   15.3   0.0    1.1  1  Yip1             Yip1 domain
      0.027   14.7   0.2       0.18   12.0   0.2    1.9  1  DUF2189          Predicted integral membrane protein (DUF2189
      0.029   13.6   0.5      0.034   13.3   0.5    1.0  1  BPD_transp_2     Branched-chain amino acid transport system /
      0.087   13.6   1.0        1.6    9.5   0.1    2.1  2  Tmemb_14         Transmembrane proteins 14C
       0.29   10.9   3.2        1.4    8.7   3.2    1.8  1  DUF4579          Domain of unknown function (DUF4579)


Domain annotation for each model (and alignments):
>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   8.3e-07    0.0019      46      98 ..      31      98 ..      13     108 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.3e-07
  Phage_holin_3_6 46 lallalllllvala...........lalaa.......lwlaalivaavllvlagvlalvglkklkkakplp 98
                     +al+a++l+l+ +             +  +        w+++++v++v++v a++ +++ +  +kk+k++p
       CCG92516.1 31 VALTAVVLFLLYFQslcndqkifsmTG--VtrgfekeDWAGFFLVTIVFVVWAALGVFIYYL-FKKSKAPP 98
                     233333333333313455555544322..23445788********99999999888888887.55555433 PP

>> DUF2615  Protein of unknown function (DUF2615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.21   4.7e+02      47      71 ..      19      42 ..       6      44 .. 0.50
   2 !   15.0   0.0   9.1e-06      0.02      28      74 ..      43      91 ..      31     115 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.21
     DUF2615 47 easkeggsslfliallwlvvaavlf 71
                + +++++++  l+al  +v+ + l+
  CCG92516.1 19 HYQNRKNKKNYLVALTAVVLFL-LY 42
                4455555555555554444443.33 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 9.1e-06
     DUF2615 28 sQsyCtDneCldese.lpg.peaskeggsslfliallwlvvaavlfllr 74
                 Qs C+D++ ++ ++ + g ++++ +g+  +++++++w+++ +++++l 
  CCG92516.1 43 FQSLCNDQKIFSMTGvTRGfEKEDWAGFFLVTIVFVVWAALGVFIYYLF 91
                69**********9995444444445666666666777777777777654 PP

>> Colicin_K  Colicin-K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.8   3.5e-06    0.0079      12      95 ..      10      93 ..       5      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.5e-06
   Colicin_K 12 eslipwllylllnynddislllifiasihvllypys...kltifsfikettklkkepwysyklfyllylamaipvglpsfiyytlkr 95
                e l+  + +   n +++   l+ + a +  lly  s      ifs+   t  + ke w  + l+ +++++ a    l  fiyy +k+
  CCG92516.1 10 ENLLNLMKIHYQNRKNKKNYLVALTAVVLFLLYFQSlcnDQKIFSMTGVTRGFEKEDWAGFFLVTIVFVVWA---ALGVFIYYLFKK 93
                677777778888999999999999999999999887322457999999999*******99888877777655...7899****9986 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   5.7e-06     0.013      28      83 ..      30      91 ..      19     103 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.7e-06
        Yip1 28 llalltlllgllas......lnlgqtlasgeevqgltlssllgaiiggylglllgllllall 83
                l+al++++l+ll++      + + ++++  +  ++  +  ++ + i+++++  lg++++ l+
  CCG92516.1 30 LVALTAVVLFLLYFqslcndQKIFSMTGVTRGFEKEDWAGFFLVTIVFVVWAALGVFIYYLF 91
                56677777777777677666333333333344456667777777777777777777776665 PP

>> DUF2189  Predicted integral membrane protein (DUF2189)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   8.2e-05      0.18      37      87 ..      55     106 ..       4     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.2e-05
     DUF2189  37 alkalranassllllglllallfllWvraaallfallfg.tapleslsafle 87 
                 +  + r  +++ ++  +l+ ++f++W+ + ++++ l+ + +ap++++++fl 
  CCG92516.1  55 MTGVTRGFEKEDWAGFFLVTIVFVVWAALGVFIYYLFKKsKAPPPDYAEFLD 106
                 5555566666667777788899***************996777788888875 PP

>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   1.5e-05     0.034      80     153 ..      25      95 ..      18      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
  BPD_transp_2  80 lkvdeliitllllsvlvgltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtr 153
                    k ++l++ ++++++l+++  l + + +  ++g++ + e  ++ag +l ++++   +++++l +++++l+++++
    CCG92516.1  25 NKKNYLVALTAVVLFLLYFQSLCNDQKIFSMTGVTRGFEKEDWAGFFLVTIVF---VVWAALGVFIYYLFKKSK 95 
                   6789999999***********9***********************99999976...888999999999999986 PP

>> Tmemb_14  Transmembrane proteins 14C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00072       1.6      45      79 ..      21      56 ..      12      61 .. 0.78
   2 ?    2.9   0.1     0.082   1.8e+02       2      25 ..      73      96 ..      70      97 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00072
    Tmemb_14 45 sknkka.kelslvislvlllvmgkrllktrkfmpag 79
                +++k++ + l+ ++++vl+l  ++ l++ +k++++ 
  CCG92516.1 21 QNRKNKkNYLVALTAVVLFLLYFQSLCNDQKIFSMT 56
                333334699999********************9986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.082
    Tmemb_14  2 laiaygallavGGilgYlkagSvp 25
                ++i++ +  a+G ++ Yl ++S++
  CCG92516.1 73 VTIVFVVWAALGVFIYYLFKKSKA 96
                567777888999999999999986 PP

>> DUF4579  Domain of unknown function (DUF4579)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.2   0.00061       1.4      24      77 ..      14      81 ..       7      95 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00061
     DUF4579 24 nvfvleylnerlwkgvllfivsvvvvslrlisevanqealta..............flvfgllvglwl 77
                n+  ++y+n++  k +l+++++vv+  l++ s  ++q+ +++              f+++++++ +w 
  CCG92516.1 14 NLMKIHYQNRKNKKNYLVALTAVVLFLLYFQSLCNDQKIFSMtgvtrgfekedwagFFLVTIVFVVWA 81
                66789*************************99999998887666777777777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1276  (0.0711696); expected 358.6 (0.02)
Passed bias filter:                      742  (0.0413855); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 809.27
//
Query:       CCG92517.1  [L=98]
Description: Predicted small integral membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-07   31.2  17.5    2.7e-07   30.9  17.5    1.1  1  COX4_pro         Prokaryotic Cytochrome C oxidase subunit IV
  ------ inclusion threshold ------
      0.027   14.7   7.1      0.034   14.4   7.1    1.1  1  TctB             Tripartite tricarboxylate transporter TctB f
        1.9    8.5  18.7       0.48   10.5   6.5    2.1  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
        2.3    7.9   6.2       0.26   11.0   1.3    1.7  2  DUF1673          Protein of unknown function (DUF1673)
          6    6.0  13.8        7.1    5.7  13.8    1.0  1  Herpes_LMP1      Herpesvirus latent membrane protein 1 (LMP1)


Domain annotation for each model (and alignments):
>> COX4_pro  Prokaryotic Cytochrome C oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9  17.5   7.4e-11   2.7e-07       2      69 ..      17      86 ..      16      89 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 7.4e-11
    COX4_pro  2 ivfvlllilTaiefalviiklgkllaiiiilvlalvKavlillyFMHLkeekk...glrllaliflvflil 69
                +vf++l+il ++ +a+++++lg++++++ ++ +a v+a+l l + MH+ +ekk   +l+ la++f++ l l
  CCG92517.1 17 VVFGFLVILALVNVAVSYLHLGGMNIAAGLV-IAGVQALLALGILMHIFWEKKtihHLIGLAILFVLALFL 86
                79******************97777777777.*********************555555555555555555 PP

>> TctB  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   7.1   9.4e-06     0.034      60     126 ..       9      88 ..       2      91 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.4e-06
        TctB  60 redwrkllklvlallaalllyalllepl.........Gfilata..lflllll....greerkwlkalilavvlallvyllF 126
                 +++ ++ +  v+++l++l+l  +++ +l         G+++a +  l l+l++    ++e++ +  +++la++++l+++ll 
  CCG92517.1   9 KKRIKSYF-VVFGFLVILALVNVAVSYLhlggmniaaGLVIAGVqaL-LALGIlmhiFWEKKTIHHLIGLAILFVLALFLLL 88 
                 33444444.5555555555555566665677777777*******963.44444466548999****************9986 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   6.5   0.00014      0.48      24      85 ..       3      62 ..       1      69 [. 0.70
   2 ?    5.0   3.4    0.0069        25      31      51 ..      71      91 ..      66      96 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
  Phage_holin_3_6 24 aElkeeakragsgagllgaagvlallalllllvalalalaalwlaalivaavllvla.gvlal 85
                      E+  e+kr+ s  +++g  ++lal+ +++  + l   +    +a l++a+v ++la g+l+ 
       CCG92517.1  3 EEIHTEKKRIKSYFVVFGFLVILALVNVAVSYLHLGG-M--NIAAGLVIAGVQALLAlGILMH 62
                     5899999999999999999999999999988888842.2..2455566665555555255554 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0069
  Phage_holin_3_6 31 kragsgagllgaagvlallal 51
                      +++ +a+l+++a++l+l+a 
       CCG92517.1 71 HHLIGLAILFVLALFLLLVAS 91
                     578888999999999999886 PP

>> DUF1673  Protein of unknown function (DUF1673)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.3   7.3e-05      0.26     138     210 ..       4      68 ..       1      76 [. 0.73
   2 ?   -0.8   0.4       0.3   1.1e+03     157     171 ..      78      92 ..      72      97 .. 0.40

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.3e-05
     DUF1673 138 evtenenpvlrwllrllllviflliavllillsyvesiagelqlgevvssfisgllllllwliylqviywekk 210
                 e+   ++++  + ++  +lvi++l+    ++ sy++  + ++    ++ + i+g + +ll l  l  i+wekk
  CCG92517.1   4 EIHTEKKRIKSYFVVFGFLVILALV---NVAVSYLHLGGMNI----AAGLVIAG-VQALLALGILMHIFWEKK 68 
                 5677777888888888888888877...55566666666666....56788999.6667778888899****9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.3
     DUF1673 157 viflliavllillsy 171
                 ++f+l+++ll + sy
  CCG92517.1  78 ILFVLALFLLLVASY 92 
                 223333333333333 PP

>> Herpes_LMP1  Herpesvirus latent membrane protein 1 (LMP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  13.8     0.002       7.1      87     161 ..      22      94 ..      12      96 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.002
                  XXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Herpes_LMP1  87 llmitlllialwnlh..gqalylgivlfifgcllvlglwiyllellwrlgatiwqllafflaffldlilliialylq 161
                  l++++l+ +a+  lh  g  +  g+v+  + +ll lg+   l+ ++w    ti +l+ + + f+l l ll++a y++
   CCG92517.1  22 LVILALVNVAVSYLHlgGMNIAAGLVIAGVQALLALGI---LMHIFWEK-KTIHHLIGLAILFVLALFLLLVASYFD 94 
                  55666777777777722555555555555556666666...67889985.79*********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1275  (0.0711138); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 725.75
//
Query:       CCG92518.1  [L=263]
Description: Heme/copper-type cytochrome oxidase, subunit 3 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-18   65.4  15.3    4.6e-09   36.5   2.0    2.2  2  COX3      Cytochrome c oxidase subunit III


Domain annotation for each model (and alignments):
>> COX3  Cytochrome c oxidase subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   2.0   2.6e-13   4.6e-09      77     180 ..      19     113 ..      10     134 .. 0.90
   2 !   34.5   5.8   1.1e-12   1.9e-08     188     255 ..     193     262 ..     180     263 .] 0.74

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 2.6e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHS--GGGTSSSS-TT-----TTSHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHH CS
        COX3  77 klGlilfiisevllflalfwaffhsalsPtvelGatwpPvGikavnPlevPllntiillssGvtvtyahhsliegnrkkalkgllltillavlftllqa 175
                 k+G+ lf+ sev+lf +lf a+          lGat  P  i +   + + l+nt++l+ss +t+  a  sl  ++ ++  k l +t++ +vlf+ ++ 
  CCG92518.1  19 KVGIWLFLASEVMLFGGLFSAYIF------LRLGATHWPHHILN---VPMGLFNTMVLISSSITMVMAWSSLKMRQFSNYRKWLGITLFCGVLFLSVKS 108
                 89********************85......57888766765544...45789*********************************************** PP

                 HHHHH CS
        COX3 176 veyle 180
                 vey +
  CCG92518.1 109 VEYKD 113
                 ***86 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 1.1e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--BSSB-HH..HHHHHHHHHHHHHHHHHHHHHTTT CS
        COX3 188 gvyGsvfylatGlhglhviigtillavallrllkyhltknhhlG..feaailywhfvdvvwlflyvsvyw 255
                   y ++++  tG+h lh++ g ++l   +   ++ + t+  hl    e+a l+whfvd+vw+fl+ ++y 
  CCG92518.1 193 NTYLATYFTMTGIHALHILGGLLVLGYFWGPGAALYRTNPEHLAnrVEVAGLFWHFVDLVWIFLFPTLYL 262
                 67999************98776666544434444444444444323899*****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1934.80
//
Query:       CCG92519.1  [L=615]
Description: Heme/copper-type cytochrome oxidase, subunit 1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-127  426.3  70.0   1.6e-127  425.9  70.0    1.1  1  COX1      Cytochrome C and Quinol oxidase polypeptide I


Domain annotation for each model (and alignments):
>> COX1  Cytochrome C and Quinol oxidase polypeptide I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.9  70.0  9.1e-132  1.6e-127       2     430 ..      37     524 ..      36     526 .. 0.96

  Alignments for each domain:
  == domain 1  score: 425.9 bits;  conditional E-value: 9.1e-132
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCTCT.........................-HHCHHHHHHHHHHHHHHHHHHHH.CHHHHHHHHHHHHCTSS-S CS
        COX1   2 igllylilalvlllvggllgllirlqlafp.........................dletynqlrtlHgnlmiflfatpf.ilgfgnylvplllgardla 74 
                 ig++y++++l++ l++++l +l+r+ql fp                         +++ yn +  +Hg++mif+ ++p+ ++gfgn++vpl++ga+d+a
  CCG92519.1  37 IGYQYMVTSLFVALFAFFLMVLMRWQLSFPgkpipifgpilekllgssmapggvmTPQLYNSFGAMHGTMMIFMALVPAlFAGFGNFVVPLQIGAPDMA 135
                 899************************887666667777777777666666666677****************************************** PP

                 -HHHHHHHHHHHHHHHHHHHHHHH...CSS-STTTTTTTC...............SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCGS-HHH CS
        COX1  75 fprlnalsfwlvvlgvvllllsll...gaattgwteYapls..............evdlwllglllvvvssllgainfivtilkrrapgmtvaklplfv 156
                 fprln++sfwl+++gv+++++s++   gaa+ gwt Y+pl+              +++lwl+g+++ +++sllg++n+i+ti++ r++g+++++lp+fv
  CCG92519.1 136 FPRLNMASFWLFFVGVLIMMVSFFvpgGAAKSGWTSYTPLAdfadmgpgfhpifnGQTLWLIGMVFNITGSLLGSVNIITTIIQLRTKGLSWMRLPVFV 234
                 **************************989********************************************************************** PP

                 HHHHHHHHHHHHHCHHHHHHHHHCHHHHHCT.-SSSC...............E-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHH CS
        COX1 157 wavlatailillalpvlalalllllldrslg.kffsp...............gdplldqhlfWffgHpeVyililpalgivyyilpkfagrplfsykls 239
                 w+ l+ta+l+lla+p l +a +++l+dr +g +ffsp               g+ +l+qhlfWf+gHpeVy+ ilp++giv +i+++ +++pl+syk++
  CCG92519.1 235 WSELVTAFLLLLAFPPLEAAGVMQLMDRLFGtSFFSPegliingkhadisggGSSILWQHLFWFLGHPEVYVQILPTMGIVGEIFANNTRKPLWSYKVF 333
                 ***********************************99************************************************************** PP

                 HHHHHHHHHHCCCCGGGGTTTSSS-HHHHHHHHHHHHHTHHHHHHCCCHHHHCCTTS-CHCHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTBHH CS
        COX1 240 vlafililflsflvwaHHlfttglpewlkalgsvfslliavPsglkvfnwlatlwrgsirfktpmlfflgfavlfiigGltGvllalpsvnyvvhntyw 338
                 v+++++i+fls++vwaHH+++tg+ + + +++++f+++i +Ps+l    +l+ lw+ sirf+ pmlf+l+ + +f+igGltG+ l++ + ++v+h+ty+
  CCG92519.1 334 VYSLLAIGFLSMVVWAHHMYMTGMGQAVTSFFQIFTTIISIPSVLLGTVLLLSLWGASIRFNVPMLFALAWLPMFGIGGLTGLPLGWTASDVVLHDTYY 432
                 *********************************************99**************************************************** PP

                 HHHHHHHHHTTHHHHHHHHHHHHHHHHHHSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHBSSSST--SCCCCHHHCHHHHHHHHHHH CS
        COX1 339 vvaHfHlvllgavvfllfaaiyyllpkltgrmlserlaklhfwllfiGlvlmflpmhilGllgmprraadyksfletvpelqplnvlrtigg 430
                 v++HfH+++  a +++lfa+iyy++pk tgr ++e l+k+hfw +fi ++ +f+pm++ G++g+ rr++d ++  +  +++ +ln+++++ +
  CCG92519.1 433 VIGHFHYMMAPASLLALFAGIYYWFPKATGRYMNEFLGKIHFWPTFIFFNGIFFPMLVQGFAGVHRRWYDGGAGWQMAQNVLWLNQVMSFSA 524
                 *********************************************************************86655566668888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4181.44
//
Query:       CCG92520.1  [L=212]
Description: Cytochrome c family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-11   44.4   0.1    3.3e-11   43.3   0.1    1.6  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    1.7e-09   38.7   0.0    4.1e-09   37.5   0.0    1.7  1  Cytochrom_C      Cytochrome c
  ------ inclusion threshold ------
      0.057   13.2   0.9      0.079   12.7   0.2    1.6  2  FixP_N           N-terminal domain of cytochrome oxidase-cbb3
       0.64   10.3   3.2       0.39   11.0   1.0    1.7  2  DUF2754          Protein of unknown function (DUF2754)


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.1   7.4e-15   3.3e-11       3      67 .]      88     172 ..      86     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 7.4e-15
  Cytochrome_CBB3   3 aaaGaalykknCasCHgkggag.....pslagrdwe...pdalvdiiknG............kgaMpafggqlsdeelwalvaYl 67 
                      +a G++ y+++C++CH + g+g     p+la+++     +++l +i+ nG            +g Mp++++ l+de l+a+ +Y+
       CCG92520.1  88 MAIGQEQYQAMCSACHQPSGMGmagqyPPLANSEYVigsKARLAAILLNGlsgelkingqtyNGVMPGWKTALNDEKLAAVMTYI 172
                      789**************66565666******8855534469*********999999888776789*******************8 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   9.1e-13   4.1e-09       2      91 ..      89     175 ..      88     176 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 9.1e-13
                  --HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHHTT CS
  Cytochrom_C   2 arGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYLksl 91 
                  a G+e ++a C aCH++ g g +++ +p+l++ +   +++   a +  +     +  +++++++++ mp +k  l+++ +a+++ Y+++ 
   CCG92520.1  89 AIGQEQYQAMCSACHQPSGMGMAGQ-YPPLANSEYVIGSKARLAAILLNG--LSGELKINGQTYNGVMPGWKTALNDEKLAAVMTYIRNS 175
                  579*******************988.******999888888888877775..5557788999999**********************976 PP

>> FixP_N  N-terminal domain of cytochrome oxidase-cbb3, FixP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   1.8e-05     0.079      14      45 ..      21      51 ..      20      54 .. 0.82
   2 ?   -3.7   0.0       2.3     1e+04      37      44 ..     149     156 ..     148     158 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.8e-05
      FixP_N 14 ElnnplPrWWlylFyativfavvYlilYpalg 45
                E n ++P W ++l+ + i+ +vvY++++ + g
  CCG92520.1 21 ESNRKIPSW-FWLLSFIILSGVVYILVFETGG 51
                778888876.6899999*********998755 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.3
      FixP_N  37 YlilYpal 44 
                 Y  ++p++
  CCG92520.1 149 YNGVMPGW 156
                 44566766 PP

>> DUF2754  Protein of unknown function (DUF2754)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.0   8.7e-05      0.39      22      41 ..      36      55 ..      29      65 .. 0.85
   2 ?   -2.7   0.0       1.6   7.2e+03      23      38 ..     134     149 ..     131     159 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.7e-05
     DUF2754 22 filnGvvGllGfeakGwqty 41
                +il Gvv +l fe+ Gw++ 
  CCG92520.1 36 IILSGVVYILVFETGGWRST 55
                589**************985 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.6
     DUF2754  23 ilnGvvGllGfeakGw 38 
                 +lnG+ G l ++ + +
  CCG92520.1 134 LLNGLSGELKINGQTY 149
                 5788887776665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      734  (0.0409393); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1623.78
//
Query:       CCG92521.1  [L=198]
Description: Cbb3-type cytochrome oxidase, cytochrome c subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-19   70.9   0.1    9.8e-19   67.7   0.0    1.9  2  FixO             Cytochrome C oxidase, mono-heme subunit/FixO
    2.9e-05   25.1   0.0    0.00016   22.8   0.0    1.9  1  Cytochrom_C      Cytochrome c
  ------ inclusion threshold ------
       0.26   11.6   2.2        1.2    9.5   2.2    2.3  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III


Domain annotation for each model (and alignments):
>> FixO  Cytochrome C oxidase, mono-heme subunit/FixO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   1.6e-22   9.8e-19      12     144 ..       8     146 ..       3     156 .. 0.81
   2 ?    1.3   0.0     0.034     2e+02     200     213 ..     174     187 ..     149     190 .. 0.80

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 1.6e-22
        FixO  12 lvlvlvvvaigglvei.vPlllvkstvekvesvkpytpleleGrdiyiregCyaCHsqmiRp..lrdeveR.yGeysk.agEsvyd.hPflWgskRtGP 104
                 ++ +++ +++g +v i +P+ +++ + e  e+  p   l   G+++y  +gC+ CH+q+iRp  + ++++R +G+  +   ++ ++ +Pfl g  R+GP
  CCG92521.1   8 VLGIFLCFLLGWFVYIiIPSQVLDPSPEGEETPPPNFGLVEVGQQVYGANGCSGCHTQIIRPanMGSDIARgWGNRRTfPVDYYHEtNPFL-GIVRIGP 105
                 566777888888887537999999888888888888889999*******************944557888867876541556666525776.99***** PP

        FixO 105 DlaRvGgkysd.eWhvkHlldPrsvvpesimPaykwllekk 144
                 Dl  +G++++d +W +  l++P+++ p++imP yk+l++k 
  CCG92521.1 106 DLSNIGKRKKDsSWFYILLYEPNQIFPGTIMPPYKYLFRKV 146
                 ******9887648************************9875 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.034
        FixO 200 kkeivaliaYlqrl 213
                 + e val+aYl +l
  CCG92521.1 174 SPEAVALVAYLLSL 187
                 6799*******887 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.6e-08   0.00016       2      91 ..      48     187 ..      47     188 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.6e-08
                  --HHHHH.HTTGGGTB-SSSBSSS.................................--HHHHHHHTTT-HHHHHHHHTTSS--S...........SS CS
  Cytochrom_C   2 arGkelf.tanCaaCHgvegggakqgg.............................gptlsgaaerasaasigasvanpaavsap...........rd 58 
                  + G++++ +++C +CH+   + a+ g+                             gp+ls++++r+  +s   +     ++  p           r+
   CCG92521.1  48 EVGQQVYgANGCSGCHTQIIRPANMGSdiargwgnrrtfpvdyyhetnpflgivriGPDLSNIGKRKKDSSWFYILLYEPNQIFPgtimppykylfRK 145
                  56*****99**************9999**************************************998887777766665444445555555555544 PP

                  HHHHHHHGGGGGGG....................TT--HHHHHHHHHHHHTT CS
  Cytochrom_C  59 dfekkkltaempark...................erlteqeiadlaaYLksl 91 
                   ++                               + +   e+ +l+aYL sl
   CCG92521.1 146 VRAE----------GkrnpealppeldrtlpngmQIMPSPEAVALVAYLLSL 187
                  4444..........14444444444899999999999999999999999887 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.2   0.00021       1.2       3      28 ..      47      77 ..      45     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00021
  Cytochrome_CBB3  3 aaaGaalykk.nCasCHg....kggagpsla 28
                     ++ G+++y +  C++CH+    + ++g ++a
       CCG92521.1 47 VEVGQQVYGAnGCSGCHTqiirPANMGSDIA 77
                     678*****9879*****97776556665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1339.61
//
Query:       CCG92522.1  [L=481]
Description: Cbb3-type cytochrome oxidase, subunit 1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-12   46.8  52.4      3e-12   46.1  52.4    1.2  1  COX1      Cytochrome C and Quinol oxidase polypeptide I


Domain annotation for each model (and alignments):
>> COX1  Cytochrome C and Quinol oxidase polypeptide I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1  52.4   1.7e-16     3e-12       3     423 ..      30     436 ..      29     445 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 1.7e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHCTCT......-HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSS-S-.HHHHHHHHH..HHHHHHHH CS
        COX1   3 gllylilalvlllvggllgllirlqlafp......dletynqlrtlHgnlmiflfatpfilgfgnylvplllgardlaf.prlnalsfw..lvvlgvvl 92 
                 ++ +l++a+++llv + ++ll + + + p        +t++++  +   +  +++ +++ l+ g+ylv +  +++ + +  +l +++fw   +++g++ 
  CCG92522.1  30 VIFMLVAAFFWLLVSMGFALLGAGKIVIPsllgswGWLTFGRIGLASFLVFSYGWGMNGGLAYGLYLVGKNAQEPFKGSgYFLCSALFWnlSIFIGMMA 128
                 6789**********************99955554444*********************************98665444415679999998744444444 PP

                 .HHHHHHCSS-STTTTTTTC.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCGS-HHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHCT-SS CS
        COX1  93 .lllsllgaattgwteYaplsevdlwllglllvvvssllgainfivtilkrrapgmtvaklplfvwavlatailillalpvlalalllllldrslgkff 190
                  l+  +   ++ +w  +++     l+ll l  +    l+  +     + k   +g  +++l+    ++l++++++ +a+  l++ +++l+         
  CCG92522.1 129 vLIGDI---PSLSWAGWPD---FVLFLLLLNYS----LMNYW----IVKKLIVSGNFLKNLSHS--YLLIALLWFPWAIGSLFVFFHWLV--------- 202
                 144444...8999988884...33333333333....32222....222333333334433333..567777777777777777777755......... PP

                 SCE-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHCCCCGGGGTTTSSS-HHHHHHHHHHHHHTHHHHHHCCCHH CS
        COX1 191 spgdplldqhlfWffgHpeVyililpalgivyyilpkfagrplfsyklsvlafililflsflvwaHHlfttglpewlkalgsvfslliavPsglkvfnw 289
                   + ++ ++ + W+f       ++ p+   + y  ++  + +  s  l  l +il+++ s  + a Hl+  + p w+  lg+++ +l+++  ++  + +
  CCG92522.1 203 --IRGVSFASMEWWFNEGFLHLWMAPVGLSMLYDYVEGGNDQRSSSFLGWLGLILFFLCSNFASASHLIGAPFPLWIVGLGIAARILLILGAVAIGIDL 299
                 ..799***************5555555555555555555999999**********************************************99999*** PP

                 HHCCTTS-CH.C.HHHHHHHHHHHHHH.HHHHHHHHHHTSHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH.SB--HHHHHHHHHHHHH CS
        COX1 290 latlwrgsir.f.ktpmlfflgfavlf.iigGltGvllalpsvnyvvhntywvvaHfHlvllgavvfllfaaiyyllpklt.grmlserlaklhfwllf 384
                 l  l +++++   ++ + ++++ a+ + +i+ +   l+a+p v  +vh++ + +a   l ++g++ f+l+++ +yl+ + + + +lse+  k+ fw  +
  CCG92522.1 300 LQRL-KKRVQaSkQNIFSRYFMIAFYCfLIAIIGDGLIAIPLVSRLVHFSFVEIAFLVLFIYGFYSFVLMGMAHYLYSNYFrKPWLSETFLKITFWANI 397
                 ****.778886679999999999999967777777**********************************************56688************* PP

                 HHHHHHHHHHHHHHHT.THBSSSST--SCCCCHHHCHHHH CS
        COX1 385 iGlvlmflpmhilGll.gmprraadyksfletvpelqpln 423
                  G+ ++f+ + + G++  +    ad  +f + v+++ p+ 
  CCG92522.1 398 YGISFLFVFLCLGGIIqSVELENADL-PFSQVVESVLPYL 436
                 ****************8888888876.8888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3102.13
//
Query:       CCG92523.1  [L=123]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.019   14.9   0.2      0.019   14.9   0.2    2.6  3  DUF5345   Family of unknown function (DUF5345)
      0.021   14.6   0.9      0.037   13.8   0.9    1.5  1  LapA_dom  Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> DUF5345  Family of unknown function (DUF5345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.2   2.1e-06     0.019      24      62 ..       4      42 ..       1      46 [. 0.84
   2 ?   -1.2   0.1      0.23   2.1e+03      16      19 ..      59      62 ..      44      76 .. 0.47
   3 ?    1.3   0.1     0.039   3.5e+02      14      33 ..      88     107 ..      81     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.1e-06
     DUF5345 24 qllaeekerkrkrlrrElllFlliAllilsllllalvqa 62
                q++++e++ k+     +lllF+ i++l+l +ll++++ a
  CCG92523.1  4 QQMDQEQKLKKPLIFEDLLLFIGISILFLLGLLFSFLYA 42
                77878888888888899***********99999998765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.23
     DUF5345 16 tPsl 19
                +  +
  CCG92523.1 59 EIRK 62
                2222 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.039
     DUF5345  14 vetPsleeleqllaeekerk 33 
                 v+ P +e++e+ ++ee+ +k
  CCG92523.1  88 VHIPIEEAMEKVVKEEASKK 107
                 455999*******9998776 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.9   4.1e-06     0.037      16      58 ..      20      62 ..      16      74 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.1e-06
    LapA_dom 16 elpLsllllvafgiGallgwllslwsylrlrrelrrlkkkikk 58
                +l L + + + f++G+l+ +l + +++ ++ ++ ++  ++i+k
  CCG92523.1 20 DLLLFIGISILFLLGLLFSFLYASSMQNKQALAEKKRAEEIRK 62
                56688889999*************9777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1434  (0.0799822); expected 358.6 (0.02)
Passed bias filter:                      821  (0.0457917); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 837.66
//
Query:       CCG92524.1  [L=400]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.2   11.1   0.0        0.4   10.1   0.0    1.4  1  DUF3581   Protein of unknown function (DUF3581)


Domain annotation for each model (and alignments):
>> DUF3581  Protein of unknown function (DUF3581)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   2.2e-05       0.4      30      69 ..     168     207 ..     155     213 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 2.2e-05
     DUF3581  30 gDfnPihdvdakrfcvPGDLLfalvlaklGlsqkmefkfa 69 
                 gD nP+h    kr + P  +Lf  +++ + +   m+++f+
  CCG92524.1 168 GDGNPLHSLKLKRIAYPVAVLFGFLFTFFAIDWAMSLEFR 207
                 799******************************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2990.29
//
Query:       CCG92525.1  [L=205]
Description: Cytochrome c family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-15   55.2   0.1      2e-14   53.6   0.0    1.7  2  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    2.9e-07   31.5   0.2    3.5e-06   28.1   0.2    2.1  1  Cytochrom_C      Cytochrome c


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.28   2.5e+03      32      58 ..      43      70 ..      20      74 .. 0.65
   2 !   53.6   0.0   2.2e-18     2e-14       3      67 .]      99     178 ..      97     178 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.28
  Cytochrome_CBB3 32 wepdalvdiiknGk.gaMpafggqlsde 58
                     ++++a   +  +G+  +Mp  g+ + +e
       CCG92525.1 43 VKEQAYSVFFPDGMaARMPVNGTVCWEE 70
                     4445555567778734799888777665 PP

  == domain 2  score: 53.6 bits;  conditional E-value: 2.2e-18
  Cytochrome_CBB3   3 aaaGaalykknCasCHg.kggag............pslagr...dwepdalvdiiknGkgaMpafggqlsdeelwalvaYl 67 
                      +++G++ ++ +C++CHg + g g            p+ +++   ++++ +++ ii +G g M ++g +ls ee+wa+vaY+
       CCG92525.1  99 LKKGKENFEIYCSACHGlA-GYGngiatrfnlfgvPNYHQDhtrELPDGQIFYIISHGQGMMLGYGANLSVEERWAIVAYI 178
                      789**************63.3334588999999999998553447888********************************8 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.2   3.9e-10   3.5e-06       2      91 ..     100     181 ..      99     182 .. 0.68

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 3.9e-10
                  --HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHHTT CS
  Cytochrom_C   2 arGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYLksl 91 
                  ++Gke f+  C aCHg++g g++++   t  ++    ++ ++          ++ + + +++    +m  +  +l+ +e+++++aY++ l
   CCG92525.1 100 KKGKENFEIYCSACHGLAGYGNGIA---TRFNLFGVPNYHQDHTRELPDG--QIFYIISHGQG---MMLGYGANLSVEERWAIVAYIRAL 181
                  79*****99*************975...5556666566655554444442..23333333333...34444457*************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1563.19
//
Query:       CCG92526.1  [L=198]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-57  194.2   0.2    1.5e-57  194.0   0.2    1.0  1  DUF3341   Protein of unknown function (DUF3341)


Domain annotation for each model (and alignments):
>> DUF3341  Protein of unknown function (DUF3341)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.0   0.2   8.3e-62   1.5e-57       1     168 [.      10     193 ..      10     195 .. 0.96

  Alignments for each domain:
  == domain 1  score: 194.0 bits;  conditional E-value: 8.3e-62
                 --B------SSHHHHHHHHHHHSS----EEB-SS--TT-TTTSS--SS-STHHHHHHHHHHHHHHHHHHHIII................IISS---STT CS
     DUF3341   1 kgllaeFddedallkAakklreagykkldvysPfpvhgldealglkksrlpliallgGllGlalalllqvyts................vvdyplnigG 83 
                 +gl aeFd+ ++l++Aak+l + gy++++vysPfp+hg++++  l ks+++l++l+gGl+Gl++al++++ +s                 ++ypl+++G
  CCG92526.1  10 YGLGAEFDSIHKLMAAAKELSKLGYTQWEVYSPFPIHGIAHVRRLGKSKVSLFSLVGGLIGLSIALVMVTAISaprpsffkevlsshlqGLFYPLVVQG 108
                 6899*****************************************************************88888888888888887777889******* PP

                 --SS-HHHHHHHHTHHHHHHHHHHHHHTTTTTT-S-----TTTT-TTGGG.TTTS---EE--S-SS---HHHHHHTTSS--S--- CS
     DUF3341  84 kPlfslpafipitFEltvLfaalatvlgllllnglprlyhpvfkaenfdrratdDkffllieatdpkfdeeelkalLkelgAeev 168
                 kP++ ++af+p++ E+t+Lfa+++tv+g++++n++p++y++v+++e+++++a+dD+ffl++e++dp+f+e+++k +LkelgA++v
  CCG92526.1 109 KPYLGFQAFVPVLIEMTILFASFSTVIGVFFFNRMPSPYKSVWNWERLSQKAMDDRFFLVVEKSDPHFSEDKTKLILKELGAQAV 193
                 **********************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1361.16
//
Query:       CCG92527.1  [L=480]
Description: Polysulphide reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-14   54.8  26.0    1.1e-14   54.8  26.0    1.8  2  NrfD      Polysulphide reductase, NrfD


Domain annotation for each model (and alignments):
>> NrfD  Polysulphide reductase, NrfD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.5      0.17   3.1e+03      87     108 ..      52      74 ..      35      79 .. 0.58
   2 !   54.8  26.0   6.3e-19   1.1e-14       4     309 ..      84     410 ..      81     412 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.17
        NrfD  87 fsSimswgv.lllslyivvlvly 108
                  ++++++ + +llsl +++ ++y
  CCG92527.1  52 LEWWIAFILsFLLSLLMPLTIVY 74 
                 34555542225555555555555 PP

  == domain 2  score: 54.8 bits;  conditional E-value: 6.3e-19
        NrfD   4 ehsnsvvWglliavylFligis.Agalilaillklfkkkegkslkliirtgallaalavlagllilvldlgrperflkll.l......yynfsSimswg 94 
                 + + +v Wgl i +++F i i+ Ag li+aill  ++k + +s+++    +  +  + vl + ++ ++++gr + f++l+ +        nf+  + w+
  CCG92527.1  84 GLNSPVFWGLAILNFVFWIEIGhAGTLISAILLLTRQKWR-NSVNRA---AEAMTIFSVLCAAVFPLFHIGRQWMFWYLVpVpesyavWQNFRAALLWD 178
                 567899*************776488999999994444433.455555...55555678887777888************94355432234667888899 PP

        NrfD  95 vlllslyivvlvlyllvifekdlaakg..lpalgilaklisla...............ervakilaiialilavllgsy..tgfllsavlsrplwnspl 174
                  ++  +y+ v+ l+ ++ + +d+a +   + + g +++l  +                  +   l  ia il v+++s+  t+f  ++    p w++ +
  CCG92527.1 179 EFAVGTYFTVSCLFWYFGLIPDIAVLRdrA-EKGWKKRLYHILcwgwsgsaaewhhyeLGYL-CLGGIATILVVSVASVvsTDFATTV---LPGWHETI 272
                 9*999*****99999998888888877532.3556666666644555556666555422222.6777777777777777224555544...599***** PP

        NrfD 175 lpvlFlasaiasGlav..lllasllaarfekese...dagllkklellvilteagllv....i..lfvglaleggek.iealeaalsggfltvlFwlgv 261
                 +p+ F+  ai+sG a+  +ll++l a  + ++ +     + +   ++++i+ + g +v    i  lfv  + +++++ +  l+  ++g ++++ + + +
  CCG92527.1 273 FPPDFITGAIFSGFAMiaTLLIPLRA-LY-PQLKdviTPKHID--NMARIMLATGSMVgysyIieLFVAWYSANVYEkYLFLNR-IFG-PYAIAY-FLM 364
                 *************9886344554443.32.3444001455555..346677788888866652347775444444441555555.555.9*9988.447 PP

        NrfD 262 vllglaiplllslavprlrenvavvviasilalvgvlllrfllliagq 309
                  ++ +++p l  ++ +++r++  +v++ sil +vg+ ++rf+++++++
  CCG92527.1 365 FGFNVFLPQL--FWWKKIRSSPWAVFFISILINVGMWSERFVIVVTAL 410
                 7888888888..69999***************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3187.55
//
Query:       CCG92528.1  [L=1045]
Description: Anaerobic dehydrogenase and Fe-S-cluster domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-23   81.4   4.5    3.2e-11   43.7   0.0    3.3  3  Fer4_7         4Fe-4S dicluster domain
    6.2e-12   45.5  13.2    9.1e-10   38.6   3.4    3.6  3  Fer4_11        4Fe-4S dicluster domain
    3.3e-07   30.3  20.9     0.0023   18.0   6.1    4.2  4  Fer4_10        4Fe-4S dicluster domain
    1.5e-05   25.3  13.0       0.11   13.0   6.7    3.9  3  Fer4_8         4Fe-4S dicluster domain
    4.1e-05   23.5  28.1      0.037   14.1   3.3    4.8  4  Fer4_6         4Fe-4S binding domain
    8.8e-05   22.2   3.6    0.00026   20.7   3.6    1.9  1  TAT_signal     TAT (twin-arginine translocation) pathway sign
     0.0021   18.2  28.3      0.065   13.4  12.6    4.1  4  Fer4_9         4Fe-4S dicluster domain
      0.003   17.3   3.7      0.003   17.3   3.7    5.7  5  Fer4           4Fe-4S binding domain
     0.0072   16.4  29.1      0.021   14.9   2.2    4.8  4  Fer4_2         4Fe-4S binding domain
  ------ inclusion threshold ------
      0.028   13.4   0.0       0.86    8.5   0.0    2.2  2  Molybdopterin  Molybdopterin oxidoreductase
      0.035   14.7  20.9       0.74   10.4   8.0    3.9  3  Fer4_17        4Fe-4S dicluster domain
       0.14   13.1  22.4        5.6    8.0   0.0    4.9  6  Fer4_16        4Fe-4S double cluster binding domain
        0.2   11.3   2.1        1.2    8.8   0.0    3.0  3  EF-hand_1      EF hand
        1.3   10.1  40.5        2.9    9.1   5.8    5.0  4  Fer4_3         4Fe-4S binding domain
        1.8    8.8  29.6        6.5    7.0  12.6    4.4  4  Fer4_21        4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       8.5     1e+04       3      10 ..     212     219 ..     210     230 .. 0.84
   2 !   31.7   6.9   1.5e-10   1.8e-07       1      50 [.     780     850 ..     780     852 .. 0.82
   3 !   43.7   0.0   2.6e-14   3.2e-11       1      52 []     867     985 ..     867     985 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 8.5
      Fer4_7   3 igCgaCva 10 
                 +gC +C a
  CCG92528.1 212 VGCDFCSA 219
                 68999975 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 1.5e-10
      Fer4_7   1 rCigCgaCvaaC..................pvkaieldee.enekgtekveidpekClgCga..CvavCPt 50 
                 +C+gC+aCv+aC                   +++i++d++ +  +++ ++ ++p+ C++C++  C++vCP+
  CCG92528.1 780 SCVGCNACVVACqsennipivgkgqvmrgrIMQWIRIDNYyQGSDENLQMFFEPMLCQHCENapCESVCPV 850
                 5***********888888888888887765577777775426666888999**********99*******8 PP

  == domain 3  score: 43.7 bits;  conditional E-value: 2.6e-14
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenek......................................gtekveidpekClgC.................... 41 
                 rCig++aC+a+Cp+k+++++ ++++k                                       t ++++++ekC++C                    
  CCG92528.1 867 RCIGTRACAANCPYKVRRFNFFDYNKrdvlkkkkigpfeienlylgpfgdlgspltiqlqrnpnVTVRMRGVMEKCTFCvqrieeakitalarskgtep 965
                 8*******************9888887888888888888877777777777777766666554433667999*************************** PP

      Fer4_7  42 .........gaCvavCPtga 52 
                          +aC+++CP+ga
  CCG92528.1 966 ktiptdsvkTACQQACPAGA 985
                 *******9999*******97 PP

>> Fer4_11  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   3.4   7.6e-13   9.1e-10       2      62 ..     828     886 ..     827     894 .. 0.93
   2 !    8.5   0.2    0.0018       2.2      65      86 ..     936     957 ..     929     968 .. 0.84
   3 ?    3.4   0.1     0.067        80      82      99 ..     973     990 ..     968     991 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 7.6e-13
     Fer4_11   2 ewlflpeqCrhCleppCvasapseaivkdeetGaVlldektkkeevrevveacPykivrkn 62 
                 +++f p  C+hC+++pC +++p++a v+ + +G+ ++  +++  ++r+++  cPyk+ r n
  CCG92528.1 828 QMFFEPMLCQHCENAPCESVCPVYATVHSK-DGLNVMVYNRCI-GTRACAANCPYKVRRFN 886
                 699*************************99.999999999996.*************9987 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0018
     Fer4_11  65 tgkvekCdmcldrveaGllpac 86 
                  g++ekC++c++r+e+ + +a 
  CCG92528.1 936 RGVMEKCTFCVQRIEEAKITAL 957
                 6799***********9998875 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.067
     Fer4_11  82 llpacvescptgalnfgd 99 
                  ++ac ++cp+ga++fg+
  CCG92528.1 973 VKTACQQACPAGAIMFGN 990
                 6799***********996 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.3   2.8e-05     0.033       2      19 ..     774     791 ..     773     823 .. 0.77
   2 !   18.0   6.1   1.9e-06    0.0023       4      56 .]     831     879 ..     828     882 .. 0.90
   3 ?    3.5   2.4     0.067        80      39      56 .]     936     982 ..     922     982 .. 0.84
   4 ?    5.3   0.3     0.017        21      14      24 ..     976     994 ..     974    1013 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.8e-05
     Fer4_10   2 vvidddtCirCgkCvkaC 19 
                 +vid  +C++C++Cv aC
  CCG92528.1 774 MVIDLGSCVGCNACVVAC 791
                 799*************** PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.9e-06
     Fer4_10   4 idddtCirCg..kCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 +++  C +C+   C ++CP+      +    s+++ +  ++ +C+g  aC++ CP
  CCG92528.1 831 FEPMLCQHCEnaPCESVCPV------YATVHSKDGLNVMVYNRCIGTRACAANCP 879
                 57788*****889*******......7888888888888***************9 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.067
     Fer4_10  39 rkkvekCtgc.............................gaCveaCP 56 
                 r+++ekCt+c                             +aC++aCP
  CCG92528.1 936 RGVMEKCTFCvqrieeakitalarskgtepktiptdsvkTACQQACP 982
                 6789999999999999999999999988888888888878******9 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.017
     Fer4_10  14 kCvkaCPadl........t 24 
                 +C++aCPa +        +
  CCG92528.1 976 ACQQACPAGAimfgnlmdQ 994
                 7*******55444444331 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   6.7     9e-05      0.11       2      63 ..     778     850 ..     777     852 .. 0.66
   2 !   11.5   0.1   0.00027      0.32       3      35 ..     866     919 ..     864     947 .. 0.51
   3 ?    2.0   0.0      0.25     3e+02      10      18 ..     976     984 ..     974    1020 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9e-05
      Fer4_8   2 lekCieCgaCqsaCpvlrrtkkhlldargeaae............dvqeeqvleeeealwsCttcga..CtevCpv 63 
                 l +C++C aC  aC    ++++ +   +g+++             ++ ++++l+       C++c++  C++vCpv
  CCG92528.1 778 LGSCVGCNACVVACQ---SENNIPIVGKGQVMRgrimqwiridnyYQGSDENLQMFFEPMLCQHCENapCESVCPV 850
                 568***********5...3334444444444444444477766753333333333667889****9999******7 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00027
      Fer4_8   3 ekCieCgaCqsaCp.vlrrtkkhlldargeaae....................d 35 
                 ++Ci+  aC ++Cp  +rr++ + +++r+  ++                     
  CCG92528.1 866 NRCIGTRACAANCPyKVRRFNFFDYNKRDVLKKkkigpfeienlylgpfgdlgS 919
                 689999*******93344444444444444444555555444444444444440 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.25
      Fer4_8  10 aCqsaCpvl 18 
                 aCq+aCp+ 
  CCG92528.1 976 ACQQACPAG 984
                 577777632 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   3.3   3.1e-05     0.037       3      19 ..     775     791 ..     774     795 .. 0.93
   2 !   10.9   1.8   0.00032      0.39       8      23 ..     835     852 ..     829     853 .. 0.84
   3 !   10.2   1.0   0.00054      0.64       6      22 ..     865     881 ..     862     882 .. 0.89
   4 ?    3.3   0.8     0.081        97      14      24 .]     976     986 ..     975     986 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
      Fer4_6   3 eidpdkCigCgdCvrvC 19 
                 +id  +C+gC++Cv++C
  CCG92528.1 775 VIDLGSCVGCNACVVAC 791
                 79999************ PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00032
      Fer4_6   8 kCigCgd..CvrvCPega 23 
                 +C +C++  C++vCP +a
  CCG92528.1 835 LCQHCENapCESVCPVYA 852
                 8****888*******987 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00054
      Fer4_6   6 pdkCigCgdCvrvCPeg 22 
                 +++Cig ++C+++CP++
  CCG92528.1 865 YNRCIGTRACAANCPYK 881
                 69*************96 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.081
      Fer4_6  14 dCvrvCPegai 24 
                 +C  +CP+gai
  CCG92528.1 976 ACQQACPAGAI 986
                 6999******8 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   3.6   2.2e-07   0.00026       1      25 [.       9      31 ..       9      32 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.2e-07
  TAT_signal  1 klSRRdFLKgsAAaaAAaalggcaa 25
                k++RR+FLK  A+ aAA+a+g+ aa
  CCG92528.1  9 KMNRRTFLK--AMSAAAMATGSIAA 31
                79*******..*********99886 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4  12.6   5.5e-05     0.065       2      48 ..     781     850 ..     780     852 .. 0.86
   2 !   11.7   8.5   0.00019      0.22       2      49 ..     836     881 ..     835     883 .. 0.89
   3 ?    3.3   3.0     0.078        93      34      51 .]     940     986 ..     920     986 .. 0.74
   4 ?    4.3   0.5     0.038        45       7      18 ..     976     987 ..     970    1001 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.5e-05
      Fer4_9   2 CtgCgaCveaCpagvvve.daaerkarlraase....................eaCigCga..CveaCpk 48 
                 C+gC+aCv aC+++ +++   +++ +r r+ ++                      C +C+   C+ +Cp 
  CCG92528.1 781 CVGCNACVVACQSENNIPiVGKGQVMRGRIMQWiridnyyqgsdenlqmffepMLCQHCENapCESVCPV 850
                 ***********8877755156667778888777999*****************9**************96 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00019
      Fer4_9   2 CtgCga..CveaCpagvvvedaaerkarlraaseeaCigCgaCveaCpkg 49 
                 C  C +  C+++Cp  ++v ++ +  + + +    +Cig +aC++ Cp +
  CCG92528.1 836 CQHCENapCESVCPVYATVHSKDGLNVMVYN----RCIGTRACAANCPYK 881
                 99**9788**********9999999888876....5************86 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.078
      Fer4_9  34 eaCigCga.............................CveaCpkgai 51 
                 e+C++C +                             C +aCp gai
  CCG92528.1 940 EKCTFCVQrieeakitalarskgtepktiptdsvktaCQQACPAGAI 986
                 58888888888888888888888888888888888889999999887 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.038
      Fer4_9   7 aCveaCpagvvv 18 
                 aC++aCpag+++
  CCG92528.1 976 ACQQACPAGAIM 987
                 688899988876 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   3.7   2.5e-06     0.003       2      19 ..     775     792 ..     774     794 .. 0.91
   2 ?    0.9   3.5      0.38   4.5e+02      14      22 ..     844     852 ..     831     852 .. 0.88
   3 !    6.8   0.5    0.0053       6.3       5      22 ..     865     882 ..     862     884 .. 0.87
   4 ?   -0.1   0.3       0.8   9.5e+02       5      11 ..     939     945 ..     938     945 .. 0.89
   5 !    8.0   0.8    0.0022       2.6      13      23 ..     976     986 ..     975     987 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.5e-06
                 EEETTTSSS-THHHHHST CS
        Fer4   2 videekCigCGaCvevCP 19 
                 vid   C+gC+aCv +C 
  CCG92528.1 775 VIDLGSCVGCNACVVACQ 792
                 89***************5 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.38
                 HHHHSTTTE CS
        Fer4  14 CvevCPvgA 22 
                 C++vCPv A
  CCG92528.1 844 CESVCPVYA 852
                 ******976 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0053
                 TTTSSS-THHHHHSTTTE CS
        Fer4   5 eekCigCGaCvevCPvgA 22 
                 +++Cig  aC+  CP+ +
  CCG92528.1 865 YNRCIGTRACAANCPYKV 882
                 689************975 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.8
                 TTTSSS- CS
        Fer4   5 eekCigC 11 
                 +ekC++C
  CCG92528.1 939 MEKCTFC 945
                 69***** PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.0022
                 HHHHHSTTTEE CS
        Fer4  13 aCvevCPvgAI 23 
                 aC ++CP gAI
  CCG92528.1 976 ACQQACPAGAI 986
                 7*********9 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   2.2   1.8e-05     0.021       3      20 ..     774     791 ..     772     793 .. 0.91
   2 !    8.9   1.9    0.0015       1.8       4      21 ..     830     849 ..     828     850 .. 0.87
   3 ?    5.9   1.1     0.013        15       7      22 .]     865     880 ..     861     880 .. 0.86
   4 ?    2.4   2.0      0.17     2e+02      15      22 .]     976     983 ..     975     983 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.8e-05
      Fer4_2   3 vvvdtdrCigCgaCvsaC 20 
                 +v+d  +C+gC+aCv aC
  CCG92528.1 774 MVIDLGSCVGCNACVVAC 791
                 78999************* PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0015
      Fer4_2   4 vvdtdrCigCg..aCvsaCP 21 
                 ++++  C +C+  +C s+CP
  CCG92528.1 830 FFEPMLCQHCEnaPCESVCP 849
                 678889****889******* PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.013
      Fer4_2   7 tdrCigCgaCvsaCPa 22 
                  +rCig +aC  +CP+
  CCG92528.1 865 YNRCIGTRACAANCPY 880
                 679***9********5 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.17
      Fer4_2  15 aCvsaCPa 22 
                 aC++aCPa
  CCG92528.1 976 ACQQACPA 983
                 7******8 PP

>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.047        56      64     168 ..     164     269 ..     122     287 .. 0.63
   2 ?    8.5   0.0   0.00072      0.86     324     417 ..     363     456 ..     316     465 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.047
                    HHHHHTT-EEE-BEECCGGGTTHHHHCHHCCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHH.......HHHHHHHHHTTC-EEEEECSSB- CS
  Molybdopterin  64 kllsllggknlsfydwyadlppasaqqtigsdsrsnyessnpledlensdliilwGsNvreerpil.......narirkaalkkkakvivigprya 152
                    ++l++    +++fyd+ ++ +  +a       +r+  +s +p+ ++e++d+i+ +G +     + +       ++r + + + ++ ++ v+++r +
     CCG92528.1 164 EFLEKCPHATFAFYDPVGNENRKEA------IKRFYGVSLSPVFQWEKADVILSVGCDFCSAEEGVeairgfvKSRKLTESSSSMSRLYVVENRMT 253
                    5666666666777777777754433......33444444456668***********9988777766444443334444444444477777777777 PP

                    HCGGGCSEEEEEHTTT CS
  Molybdopterin 153 ellkfadewlaikpgt 168
                     +   ad  la+k   
     CCG92528.1 254 VTGAMADHRLALKVSD 269
                    6555666666666554 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00072
                    -ECGGCHHHHHHTTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEESCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEEEEESSS-ST CS
  Molybdopterin 324 rnlfversnllkssgkkvlyllgnnpevdhadenevekalekldlvvvldgrltstalyaDiiLPaatwyEkedlytndegrfqhlkqavsppg 417
                    + +f e  +++k++++k l ++g np+ +++  ++  + +++l  vv +    ++ta ya+   P ++++E  + + +++g   + +++++p +
     CCG92528.1 363 GASFPELCEMIKKEEIKDLLIIGANPVYNAPGDSHWPELQRSLPSVVHFGLLNDETAAYANWHIPLSHYLECWGDSKTSSGLYVSQQPLIEPLF 456
                    457888999*****************987765555546666999999998888******************88888888888888888888766 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   8.0   0.00062      0.74       2      57 ..     781     849 ..     780     853 .. 0.67
   2 ?    3.8   8.6     0.074        88      25      60 ..     849     882 ..     835     883 .. 0.61
   3 ?    0.9   0.1      0.56   6.7e+02       7      30 ..     976    1002 ..     974    1018 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00062
     Fer4_17   2 CiqCgyClpeCpsyeaydnepk.kllraakl..........glleeaeke.ekaslCieCge..CerkCP 57 
                 C +C +C+ +C s ++++   k +++r   +          g+ e+  ++  +  lC +C++  Ce++CP
  CCG92528.1 781 CVGCNACVVACQSENNIPIVGKgQVMRGRIMqwiridnyyqGSDEN-LQMfFEPMLCQHCENapCESVCP 849
                 ****************888544234444433345545444322233.23335889999998666*****9 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.074
     Fer4_17  25 llraaklglleeaekeekaslCieCgeCerkCPqgl 60 
                 +++a +++++++  + ++ ++Ci+ + C++ CP+++
  CCG92528.1 849 PVYA-TVHSKDGL-NVMVYNRCIGTRACAANCPYKV 882
                 4443.33334443.347899*************986 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.56
     Fer4_17    7 yClpeCpsyea...ydnepkkllraak 30  
                  +C ++Cp +++   +  ++++++ ++k
  CCG92528.1  976 ACQQACPAGAImfgNLMDQQSMVSKWK 1002
                  588888887775544456666776665 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.5   5.4e+03      10      60 ..     167     217 ..     166     219 .. 0.47
   2 ?    2.8  11.4       0.2   2.4e+02       2      66 ..     781     850 ..     780     851 .. 0.67
   3 ?    3.3   2.9      0.13   1.6e+02       2      20 ..     836     856 ..     835     861 .. 0.85
   4 ?    4.4   1.0     0.061        73      49      66 ..     863     880 ..     851     881 .. 0.74
   5 ?    4.4   0.9     0.061        73       1      19 [.     867     885 ..     867     908 .. 0.74
   6 ?    8.0   0.0    0.0047       5.6       6      35 ..     975    1002 ..     974    1023 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4.5
     Fer4_16  10 evCPtnaikekkekeiearecisyntaekkdlaedeekckkqeai..tgCdiC 60 
                 e CP++ +    +++ + +++++ +     +l++  + +k +  i   gCd C
  CCG92528.1 167 EKCPHATFAFY-DPVGNENRKEAIKRFYGVSLSPVFQWEK-ADVIlsVGCDFC 217
                 56777777766.5555555554443333333333333332.222245777777 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.2
     Fer4_16   2 CgtCgkCaevCPt.naikekkekeiearecisy..ntaekkdlaedeekckkqeaitgCd..iCqdvCPa 66 
                 C++C++C+ +C + n i    + ++   + +++   ++  ++  e+ +   + + +  C    C+ vCP+
  CCG92528.1 781 CVGCNACVVACQSeNNIPIVGKGQVMRGRIMQWirIDNYYQGSDENLQMFFEPMLCQHCEnaPCESVCPV 850
                 ***********98366776666999999999994323333444444444445566677765558899996 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.13
     Fer4_16   2 CgtCgk..CaevCPtnaikek 20 
                 C+ C++  C +vCP+ a  + 
  CCG92528.1 836 CQHCENapCESVCPVYATVHS 856
                 99999999******9997665 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.061
     Fer4_16  49 kkqeaitgCdiCqdvCPa 66 
                 + +++++g ++C++ CP+
  CCG92528.1 863 MVYNRCIGTRACAANCPY 880
                 456788888888888887 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.061
     Fer4_16   1 rCgtCgkCaevCPtnaike 19 
                 rC++ ++Ca  CP ++ + 
  CCG92528.1 867 RCIGTRACAANCPYKVRRF 885
                 5999999999999987555 PP

  == domain 6  score: 8.0 bits;  conditional E-value: 0.0047
     Fer4_16    6 gkCaevCPtnaikekkekeiearecisynt 35  
                  ++C ++CP++ai     + ++++  +s+ +
  CCG92528.1  975 TACQQACPAGAIMFG--NLMDQQSMVSKWK 1002
                  58**********988..6666666655533 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0     0.001       1.2       5      19 ..     103     117 ..     101     118 .. 0.88
   2 ?    0.3   0.1      0.53   6.4e+02      17      28 ..     122     133 ..     120     134 .. 0.88
   3 ?   -1.8   0.0       2.5   2.9e+03      18      28 ..     365     375 ..     365     376 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.001
                 HHHHHTTTSSSEEEH CS
   EF-hand_1   5 iFrefDkDgdGkIdf 19 
                 i +++D D+dG+I++
  CCG92528.1 103 ILDLYDPDRDGRITR 117
                 7899*********96 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.53
                 EEHHHHHHHHHH CS
   EF-hand_1  17 IdfeEfkellkk 28 
                 ++++Ef+e++k+
  CCG92528.1 122 VSKKEFIEFFKS 133
                 899******997 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.5
                 EHHHHHHHHHH CS
   EF-hand_1  18 dfeEfkellkk 28 
                 +f E++e++kk
  CCG92528.1 365 SFPELCEMIKK 375
                 789*****997 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.2    0.0029       3.5       1      12 [.     781     792 ..     781     795 .. 0.92
   2 ?    9.1   5.8    0.0024       2.9       1      15 []     836     852 ..     836     852 .. 0.89
   3 ?    5.6   1.1     0.031        38       1      14 [.     868     881 ..     868     882 .. 0.93
   4 ?    7.2   0.5    0.0096        12       6      15 .]     976     985 ..     942     985 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0029
      Fer4_3   1 CtgCgaCvevCP 12 
                 C+gC+aCv++C 
  CCG92528.1 781 CVGCNACVVACQ 792
                 ***********7 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0024
      Fer4_3   1 CtgCg..aCvevCPvgA 15 
                 C++C+  +C+ vCPv A
  CCG92528.1 836 CQHCEnaPCESVCPVYA 852
                 ****8778******976 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.031
      Fer4_3   1 CtgCgaCvevCPvg 14 
                 C+g +aC   CP++
  CCG92528.1 868 CIGTRACAANCPYK 881
                 9***********97 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0096
      Fer4_3   6 aCvevCPvgA 15 
                 aC ++CP gA
  CCG92528.1 976 ACQQACPAGA 985
                 8******998 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.8   2.2e+03      42      49 ..     212     219 ..     205     227 .. 0.83
   2 ?    7.0  12.6    0.0054       6.5       2      54 ..     775     851 ..     774     855 .. 0.62
   3 ?    2.9   8.8       0.1   1.2e+02       8      53 ..     836     880 ..     830     883 .. 0.67
   4 ?    3.6   0.8     0.061        73      10      57 ..     941     986 ..     940     988 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.8
     Fer4_21  42 vGCnlCss 49 
                 vGC+ Cs+
  CCG92528.1 212 VGCDFCSA 219
                 89999986 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0054
     Fer4_21   2 ridedkCigCgkCliaCedtshqai...............eidaktvl............kvv.edeCvGCnl..CssvCPve 54 
                 +id  +C+gC+ C++aC+ +    i               +      +                   C  C+   C svCPv 
  CCG92528.1 775 VIDLGSCVGCNACVVACQSENNIPIvgkgqvmrgrimqwiR------IdnyyqgsdenlqMFFePMLCQHCENapCESVCPVY 851
                 588899************65554445665555555554441......044444444444233325689999754599999995 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.1
     Fer4_21   8 CigCgk..CliaCedtshqaieidaktvlkvvedeCvGCnlCssvCPv 53 
                 C +C++  C  +C+   + a   +++    +v ++C+G   C++ CP 
  CCG92528.1 836 CQHCENapCESVCP---VYATVHSKDGLNVMVYNRCIGTRACAANCPY 880
                 66665433666676...3444444455555679**************5 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.061
     Fer4_21  10 gCgkCliaCedtshqaieidaktvlkvvedeCvGCnlCssvCPvedci 57 
                 +C+ C++  e++ ++a+  ++ t  k++  + v  + C + CP  ++i
  CCG92528.1 941 KCTFCVQRIEEAKITALARSKGTEPKTIPTDSVK-TACQQACPA-GAI 986
                 6****************98888888888666665.579999995.776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1045 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.48
# Mc/sec: 6532.23
//
Query:       CCG92529.1  [L=218]
Description: Cytochrome c3 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-14   54.3   8.4    3.9e-09   36.4   0.3    2.6  2  Cytochrome_C7    Cytochrome c7 and related cytochrome c
    5.7e-11   42.7   5.7    1.5e-05   25.4   1.5    2.5  2  Cytochrom_c3_2   Cytochrome c3
    2.5e-08   34.2  15.9    0.00016   22.0   0.5    3.9  3  Cytochrom_CIII   Class III cytochrome C family
     0.0029   16.6   3.3     0.0029   16.6   3.3    2.3  2  Cytochrom_C552   Cytochrome c552
  ------ inclusion threshold ------
       0.12   12.7  12.4        2.7    8.3   0.5    3.7  3  DUF3365          Protein of unknown function (DUF3365)
       0.21   11.3   0.0       0.28   10.9   0.0    1.2  1  SurA_N_3         SurA N-terminal domain
       0.26   12.1   0.2       0.26   12.1   0.2    2.8  2  zf-3CxxC_2       Zinc-binding domain
       0.26   11.4   3.4       0.18   11.9   0.8    2.0  2  NinD             Family of unknown function
       0.32   11.1  10.4        2.7    8.2   0.2    3.2  3  Zn-ribbon_8      Zinc ribbon domain
       0.42   10.7  12.7        1.7    8.7   1.4    3.3  2  DZR              Double zinc ribbon
       0.48   10.8  16.2        6.5    7.2   1.3    4.9  3  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
       0.87    9.4  22.5        1.2    8.9   3.9    4.3  3  Paired_CXXCH_1   Doubled CXXCH motif (Paired_CXXCH_1)
        3.4    8.3   8.2         10    6.8   0.1    2.6  2  Stc1             Stc1 domain
        5.8    7.8  16.1         87    4.0   0.0    4.5  5  DHC              Dihaem cytochrome c


Domain annotation for each model (and alignments):
>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   2.7   2.5e-07   0.00032       3      60 ..      52      96 ..      50     108 .. 0.80
   2 !   36.4   0.3   3.1e-12   3.9e-09       1      73 []     125     218 .]     125     218 .] 0.81

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.5e-07
  Cytochrome_C7  3 fshkshlkatgykCtdCHsklfeskakkkmaemekgkskkaeves.ltCgaCHdgknaf 60
                   f+h+ h+++ g +C+ CHs++              +ks   ++ +  tC++CH++ +++
     CCG92529.1 52 FDHSLHANQLGLDCRFCHSYV--------------EKSGFSNIPTtQTCMNCHRQIKMD 96
                   99*******************..............2222335566678*****998776 PP

  == domain 2  score: 36.4 bits;  conditional E-value: 3.1e-12
  Cytochrome_C7   1 vvfshkshlkatgykCtdCHsklfeskakkkmaemekgkskkaeves.lt...CgaCHdgknaf................................ 60 
                    v+f+h+ h+++ g +C +CH+k+++      m+     k+    +++ l+   C +CH++ + f                                
     CCG92529.1 125 VYFDHSAHVNR-GISCVSCHGKVNQ------MQ-----KI---YHDQpLSmswCLDCHRNPEYFvrppdkvfdldwkpenegetqlllgkklvkem 205
                    79********5.99*********21......22.....22...2222233335**********9999999999999999999999********999 PP

  Cytochrome_C7  61 svakkaeCakCHt 73 
                      +  ++C+ CH+
     CCG92529.1 206 GIHPPENCDACHR 218
                    77799*******5 PP

>> Cytochrom_c3_2  Cytochrome c3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   1.1e-06    0.0014       3      38 ..      59      95 ..      56     113 .. 0.77
   2 !   25.4   1.5   1.2e-08   1.5e-05       1      66 [.     131     218 .]     131     218 .] 0.81

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.1e-06
                    HCCT.TGGGTSSSST.-SSTTHHHHHHHHHHH--HHH CS
  Cytochrom_c3_2  3 akegvkCadCHtkek.pkkdkaveeekClsCHgklee 38
                    ++ g++C+ CH+  + +  ++  ++++C++CH + + 
      CCG92529.1 59 NQLGLDCRFCHSYVEkSGFSNIPTTQTCMNCHRQIKM 95
                    4679********655144456778999*****99764 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1.2e-08
                     HHHCCT.TGGGTSS....SST-SSTTHHHHHHHHHHH--HHHCHTTSST...................TSSBTTSSCTSSS-GGGTS- CS
  Cytochrom_c3_2   1 vHakegvkCadCHt....kekpkkdkaveeekClsCHgkleelakktkea..................keanphkshekeleCteCHk 66 
                     +H+++g++C +CH+     +k  +d+  +++ Cl CH + e + +  ++                   k+  ++  ++   +C++CH+
      CCG92529.1 131 AHVNRGISCVSCHGkvnqMQKIYHDQPLSMSWCLDCHRNPEYFVRPPDKVfdldwkpenegetqlllgKKLVKEMGIHPPENCDACHR 218
                     59***********9443223355667888888*********99998887789999999999999999777777778899999999996 PP

>> Cytochrom_CIII  Class III cytochrome C family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.5   1.2e-07   0.00016      18      58 ..      47      94 ..      36     105 .. 0.78
   2 !    7.2   0.2    0.0051       6.5      76      92 ..      83      99 ..      74     114 .. 0.79
   3 !   12.7   9.0   9.9e-05      0.13      19      59 ..     123     174 ..     107     218 .] 0.66

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.2e-07
                    SSEEEEEHHHHT.TSH.THHHTSTT.....CTTSCSTS-CTCTS-SSS CS
  Cytochrom_CIII 18 kkavefnHkaHa.evk.eCeeCHhk.....eeekeeiekcstcHaeek 58
                    ++++ f+H+ Ha ++  +C+ CH        ++  ++++c++cH + k
      CCG92529.1 47 TQPIPFDHSLHAnQLGlDCRFCHSYveksgFSNIPTTQTCMNCHRQIK 94
                    6899*******955569******9966555555668899999**9875 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0051
                    TTCHHHHHHHHHHTSHH CS
  Cytochrom_CIII 76 aksCvgCHkkkkkekke 92
                    +++C++CH++ k ++++
      CCG92529.1 83 TQTCMNCHRQIKMDSPK 99
                    47999999998876655 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 9.9e-05
                     SEEEEEHHHHTTSH.THHHTSTT........CTTSCSTS-CTCTS-SSS..T CS
  Cytochrom_CIII  19 kavefnHkaHaevk.eCeeCHhk........eeekeeiekcstcHaeek..e 59 
                       v f+H+aH +   +C +CH k        +++  +++ c +cH + +   
      CCG92529.1 123 DYVYFDHSAHVNRGiSCVSCHGKvnqmqkiyHDQPLSMSWCLDCHRNPEyfV 174
                     5799******98878********77777776677777888999**9987663 PP

>> Cytochrom_C552  Cytochrome c552
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.4     0.065        83     124     286 ..      82      93 ..      52     100 .. 0.72
   2 !   16.6   3.3   2.3e-06    0.0029     229     288 ..     120     172 ..     105     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.065
                     S-S-HHHHB-TTTHHB----HHHHHHHHHTT---CTTS-HHHHHHHHHCTTSS--EEECCCECCCCEEE-S-TT-SSHHHHHHHHHHTT--SEE- CS
  Cytochrom_C552 124 nsvgCadCHdpkdmeLritrptlkralealgvdevkkatrqekrtlvCaqCHveYyfkkdeekkskkvtfPWdkgktveniekyydeiefadwth 218
                                                                                                                    
      CCG92529.1  82 T---------------------------------------------------------------------------------------------- 82 
                     3.............................................................................................. PP

                     TTT--EE------HHHHHHTSHHHHTT--HHHHHS-EEETTSEEEE----S-GGGGCCCTGGGT--S- CS
  Cytochrom_C552 219 kvskakllkiqHPefElysegvHakngvsCaDCHmPkvkegakkvtdHkvtsPlksiekaCksCHkqs 286
                                                                              +++C++CH+q 
      CCG92529.1  83 ---------------------------------------------------------TQTCMNCHRQI 93 
                     .........................................................35666666664 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 2.3e-06
                     ---HHHHHHTSHHHHTT--HHHHHS-EEETTSEEEE----S-GGGGCCCTGGGT--S-HH CS
  Cytochrom_C552 229 qHPefElysegvHakngvsCaDCHmPkvkegakkvtdHkvtsPlksiekaCksCHkqsee 288
                     q P++  + ++ H ++g+sC+ CH  kv++ +k + d     Pl++    C  CH++ e 
      CCG92529.1 120 QLPDYVYFDHSAHVNRGISCVSCHG-KVNQMQKIYHD----QPLSMS--WCLDCHRNPEY 172
                     78**********************5.66666666665....699876..89999998765 PP

>> DUF3365  Protein of unknown function (DUF3365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2    0.0046       5.9     112     130 ..      80      99 ..      75     115 .. 0.68
   2 ?    8.3   0.5    0.0021       2.7     117     135 ..     138     152 ..     122     159 .. 0.78
   3 ?    4.9   0.2     0.024        31     111     126 ..     157     171 ..     152     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0046
                 EE--TTTHHHHS-G.GG--H CS
     DUF3365 112 lrveesClkCHgdp.edapk 130
                 + + ++C++CH +   d+pk
  CCG92529.1  80 IPTTQTCMNCHRQIkMDSPK 99 
                 667899*****887345554 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0021
                 TTHHHHS-GGG--HHHHHH CS
     DUF3365 117 sClkCHgdpedapkslier 135
                 sC++CHg+ ++++k     
  CCG92529.1 138 SCVSCHGKVNQMQK----I 152
                 8********87776....3 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.024
                 EEE--TTTHHHHS-GG CS
     DUF3365 111 plrveesClkCHgdpe 126
                 pl ++  Cl CH +pe
  CCG92529.1 157 PLSMS-WCLDCHRNPE 171
                 66665.5******996 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00022      0.28       3      37 ..       3      38 ..       1      54 [. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
    SurA_N_3  3 eflrknakswiakillgliilaFvl.wGvgsylsgs 37
                ++++++++ +  killg+++l F++ +G++ y++ +
  CCG92529.1  3 NIFNRQSNDLPPKILLGIVVLGFLFvMGISYYFTPK 38
                567888889999************99******9876 PP

>> zf-3CxxC_2  Zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2    0.0002      0.26      10      39 ..      65      95 ..      62     114 .. 0.79
   2 ?    4.1   0.2     0.062        80      22      46 ..     131     155 ..     126     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
  zf-3CxxC_2 10 CekCgkeW.sSanafaneaQeCkkCkekvep 39
                C+ C+ +   S+++   ++Q+C++C+ +++ 
  CCG92529.1 65 CRFCHSYVeKSGFSNIPTTQTCMNCHRQIKM 95
                66676654269***************99875 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.062
  zf-3CxxC_2  22 afaneaQeCkkCkekvepyklrekd 46 
                 a++n++  C  C+ kv+ ++   +d
  CCG92529.1 131 AHVNRGISCVSCHGKVNQMQKIYHD 155
                 78899999********988876655 PP

>> NinD  Family of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.7   2.1e+03      25      32 ..      84      91 ..      65     101 .. 0.75
   2 ?   11.9   0.8   0.00014      0.18       4      42 ..     139     178 ..     137     191 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.7
        NinD 25 rwclrcer 32
                + c+ c r
  CCG92529.1 84 QTCMNCHR 91
                56777777 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00014
        NinD   4 cyrc.GeskedyrfrPnqPywnrwclrcersPvGvlPlPe 42 
                 c  c G+  + ++   +qP    wcl c r P   +  P+
  CCG92529.1 139 CVSChGKVNQMQKIYHDQPLSMSWCLDCHRNPEYFVRPPD 178
                 55554566666778889***************76655555 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.9    0.0039       5.1       8      35 ..      65      92 ..      63      95 .. 0.78
   2 ?    8.2   0.2    0.0021       2.7       8      34 ..     139     168 ..     122     171 .. 0.82
   3 ?    0.7   0.2      0.46   5.9e+02      21      33 ..     205     217 ..     199     218 .] 0.67

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0039
  Zn-ribbon_8  8 CeeCghefevlqsisdaplta.CPeCgse 35
                 C+ C++  e+   +s  p t+ C +C+ +
   CCG92529.1 65 CRFCHSYVEKSG-FSNIPTTQtCMNCHRQ 92
                 *****9999887.665556666****975 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0021
  Zn-ribbon_8   8 CeeCghefevlqsis.daplta..CPeCgs 34 
                  C +C+ + +++q+i  d pl    C +C+ 
   CCG92529.1 139 CVSCHGKVNQMQKIYhDQPLSMswCLDCHR 168
                  ***************999955447999987 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.46
  Zn-ribbon_8  21 isdapltaCPeCg 33 
                  +   p++ C +C+
   CCG92529.1 205 MGIHPPENCDACH 217
                  4445656699997 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.4    0.0013       1.7      15      41 ..      65      96 ..      58      98 .. 0.76
   2 ?    4.1   4.0     0.038        49      10      36 ..     134     168 ..     129     218 .] 0.80

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0013
         DZR 15 CseCgtklkavaa......edrCpsCgekvdpe 41
                C  C + +++          ++C++C+++++++
  CCG92529.1 65 CRFCHSYVEKS-GfsniptTQTCMNCHRQIKMD 96
                77777777633.247777799*******99876 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.038
         DZR  10 pdarfCseCgtklkavaa........edrCpsCge 36 
                 ++ + C  C  k++++++        +  C  C++
  CCG92529.1 134 NRGISCVSCHGKVNQMQKiyhdqplsMSWCLDCHR 168
                 56678999999999888899999999888888876 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.7    0.0076       9.7      12      34 ..      84     109 ..      58     132 .. 0.77
   2 ?    7.2   1.3     0.005       6.5      13      23 ..     138     148 ..     127     208 .. 0.74
   3 ?    0.0   1.7      0.84   1.1e+03      12      18 ..     211     217 ..     198     218 .] 0.89

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0076
  Cytochrome_CBB3  12 knCasCHg.kggagpsla..grdwep 34 
                      ++C  CH   ++  p+la  ++ we+
       CCG92529.1  84 QTCMNCHRqIKMDSPKLAplRESWET 109
                      78999998455556888855446664 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.005
  Cytochrome_CBB3  13 nCasCHg.kgga 23 
                      +C+sCHg   ++
       CCG92529.1 138 SCVSCHGkV-NQ 148
                      8*****942.22 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.84
  Cytochrome_CBB3  12 knCasCH 18 
                      +nC +CH
       CCG92529.1 211 ENCDACH 217
                      59***** PP

>> Paired_CXXCH_1  Doubled CXXCH motif (Paired_CXXCH_1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.4    0.0021       2.7       8      40 ..      64      93 ..      57      95 .. 0.74
   2 ?    8.9   3.9   0.00093       1.2       4      39 ..     133     169 ..     129     172 .. 0.79
   3 ?    1.3   1.4      0.22   2.8e+02       8      13 ..     212     217 ..     208     218 .] 0.78

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
  Paired_CXXCH_1  8 eClsCHnphgsdnpkllkkakgaalCysCHdek 40
                    +C  CH+         +    ++++C++CH + 
      CCG92529.1 64 DCRFCHSYVEKSGFSNI---PTTQTCMNCHRQI 93
                    79999988877666666...6889******875 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00093
  Paired_CXXCH_1   4 vaeg.eClsCHnphgsdnpkllkkakgaalCysCHde 39 
                     v++g +C sCH      ++    +      C++CH +
      CCG92529.1 133 VNRGiSCVSCHGKVNQMQKIYHDQPLSMSWCLDCHRN 169
                     566667*****8888866666667888999*****86 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.22
  Paired_CXXCH_1   8 eClsCH 13 
                     +C +CH
      CCG92529.1 212 NCDACH 217
                     599999 PP

>> Stc1  Stc1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.4      0.01        13      51      84 ..      61      90 ..      47      97 .. 0.79
   2 ?    6.8   0.1    0.0078        10      45      84 ..     129     167 ..     118     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.01
                -EEE-SSS--EEESTTS-HHHHHS.SS---HHHH CS
        Stc1 51 teleCsaCqktkpldeFsksqrrkpdaarCkdCv 84
                  l C  C+ + + + Fs+   ++    +C++C 
  CCG92529.1 61 LGLDCRFCHSYVEKSGFSNIPTTQ----TCMNCH 90
                558899999999999999875555....888884 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0078
                 TS-----EEE-SSS.--EEESTTS-HHHHHS.SS---HHHH CS
        Stc1  45 ctakqateleCsaC.qktkpldeFsksqrrkpdaarCkdCv 84 
                 ++a+ +  ++C  C +k++++++  + q  +   ++C dC 
  CCG92529.1 129 HSAHVNRGISCVSChGKVNQMQKIYHDQPLS--MSWCLDCH 167
                 7788888899999988999999988888887..89999995 PP

>> DHC  Dihaem cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.67   8.6e+02     105     117 ..      64      76 ..      57      77 .. 0.83
   2 ?    2.8   3.3      0.16   2.1e+02      89     114 ..      71      94 ..      65      97 .. 0.73
   3 ?    3.1   0.6      0.13   1.6e+02      98     115 ..     131     148 ..     113     151 .. 0.76
   4 ?    3.8   2.2     0.081     1e+02      86     114 ..     142     171 ..     138     174 .. 0.75
   5 ?    4.0   0.0     0.068        87      92     111 ..     199     218 .]     194     218 .] 0.83

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.67
                 -GGGT-TTGGGT- CS
         DHC 105 nCaaCHkkaekgv 117
                  C  CH+ +ek  
  CCG92529.1  64 DCRFCHSYVEKSG 76 
                 69*****999865 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.16
                 C--HHHHH..HHSSTT-GGGT-TTGG CS
         DHC  89 eveekvlkrkkvkslsnCaaCHkkae 114
                  ve++ ++  ++ ++++C++CH++++
  CCG92529.1  71 YVEKSGFS--NIPTTQTCMNCHRQIK 94 
                 55544444..678899*******987 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.13
                 .HHSSTT-GGGT-TTGGG CS
         DHC  98 kkvkslsnCaaCHkkaek 115
                 ++v+   +C++CH k+++
  CCG92529.1 131 AHVNRGISCVSCHGKVNQ 148
                 56777789*****99987 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.081
                 HHCC--H.HHHH..HHSSTT-GGGT-TTGG CS
         DHC  86 kHkevee.kvlkrkkvkslsnCaaCHkkae 114
                  H +v++ + + + +  s+s C  CH++ e
  CCG92529.1 142 CHGKVNQmQKIYHDQPLSMSWCLDCHRNPE 171
                 577887524567899999********9865 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.068
                 HHHHH..HHSSTT-GGGT-T CS
         DHC  92 ekvlkrkkvkslsnCaaCHk 111
                 +k++k+  ++  +nC aCH+
  CCG92529.1 199 KKLVKEMGIHPPENCDACHR 218
                 5677888888999******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 1512.47
//
Query:       CCG92530.1  [L=53]
Description: hypothetical protein MFUM_700080 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      125  (0.00697194); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 494.24
//
Query:       CCG92531.1  [L=213]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-37  127.8   0.0    1.3e-24   87.1   0.0    2.0  2  Cu-oxidase_4  Multi-copper polyphenol oxidoreductase laccase


Domain annotation for each model (and alignments):
>> Cu-oxidase_4  Multi-copper polyphenol oxidoreductase laccase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   7.5e-29   1.3e-24      41     154 ..      48     160 ..      33     166 .. 0.87
   2 !   39.5   0.1   2.6e-14   4.7e-10     186     230 ..     165     208 ..     159     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 7.5e-29
                   S....GEEE-B--SS--EEE-EE--GGCSSSS..B....-SEEEESSTTSEEEEEESSSEEEEEEETTSSEEEEEEE-HHHHHHTHHHHHHHHHCS. CS
  Cu-oxidase_4  41 v....rlvlleqvHgtevvvvaeeaaakgsaeeee.le.aDalvtdepgvalavltADCvPvlladpkgkvvaaaHaGwrGlvagvlektveamke. 130
                   +     ++++ q Hg+ ++vv++  ++  +      ++ aD+l+t+ ++++l++ +ADC +++++dp++++++++HaG++G+  ++++k+++++++ 
    CCG92531.1  48 LdesiPIATAGQPHGDGIAVVKS--RN--Q----LfFPqADGLLTNLSNLLLCIRVADCAALYIYDPHSTAIGLVHAGKKGTHLEIVRKALRQLTNv 136
                   43323488999*******88876..22..1....224559********************************************************* PP

                   TT--GGGEEEEE-SB--TTT-EEE CS
  Cu-oxidase_4 131 lgakpedilaaiGPsIgpecyeVg 154
                   +g+kp+d+++ i P+I+  +ye++
    CCG92531.1 137 FGSKPSDLIVQISPCIRFPHYEID 160
                   **********************86 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 2.6e-14
                   HHHHHHHTT-..SEEEE---BTTT-TTT---HHHHSH.---EEEEE CS
  Cu-oxidase_4 186 arlqLeeaGvkeenieasglCTvceedrfFSyRrdgg.tGrmaali 230
                   + +qL++ Gv  ++i ++g CT+c+ dr+FSyR+++g tGrm+a++
    CCG92531.1 165 IIHQLQSEGV--KQIFDAGSCTACNLDRYFSYRAEKGnTGRMWAVL 208
                   568*******..***********************878****9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1700.67
//
Query:       CCG92532.1  [L=124]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.24   11.6   0.0    1.6  2  ROF       Modulator of Rho-dependent transcription terminatio


Domain annotation for each model (and alignments):
>> ROF  Modulator of Rho-dependent transcription termination (ROF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.4e-05      0.24       8      70 ..      23      86 ..      18      93 .. 0.80
   2 ?   -2.3   0.0      0.28     5e+03      41      51 ..     105     115 ..      90     121 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.4e-05
                HHHHHHHTTTT-EEEE-TTT--EEESS-EEE--S...SS-EEEEEETTEEEEESTT--SEEE... CS
         ROF  8 DylEiaClyryrlkleLkdgetiegkakdtltrk..ekeEyLvvetegeeqelrldeilslsvlt 70
                + lE a  yr  ++leL +getieg   + ++++    +E+Lv  + ++++++ +++i +++   
  CCG92532.1 23 EILEAAFDYRGDVTLELVQGETIEGYLFNRQLTEapFFVEMLVPGE-ESARRIPIEQICAVTFSG 86
                56899999999**************988777776445688887655.888999999999887655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.28
                 S.SS-EEEEEE CS
         ROF  41 kekeEyLvvet 51 
                 + +eE+ ++e+
  CCG92532.1 105 ERREEAKKIES 115
                 23555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1081  (0.0602934); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 908.64
//
Query:       CCG92533.1  [L=335]
Description: Radical SAM superfamily enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-61  204.7   1.2    6.9e-61  203.9   1.2    1.4  1  DUF3463      Domain of unknown function (DUF3463)
    1.3e-16   61.4   0.3    2.6e-16   60.4   0.2    1.6  2  Radical_SAM  Radical SAM superfamily
    0.00052   20.3   0.0     0.0062   16.8   0.0    2.4  2  Fer4_12      4Fe-4S single cluster domain
     0.0036   17.4   2.7     0.0045   17.1   0.8    2.2  2  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> DUF3463  Domain of unknown function (DUF3463)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.9   1.2   1.5e-64   6.9e-61       1     131 [.     194     325 ..     194     328 .. 0.97

  Alignments for each domain:
  == domain 1  score: 203.9 bits;  conditional E-value: 1.5e-64
     DUF3463   1 itvspgysYekapdqdlflerektkelfrkilelkkkkyklnesplyldflagkqeykCtpWgnptrnvlGwqkPCYlleegyaktfkelleetdweky 99 
                 i+vspgysY+kapdq++fl+r+ktkelf++il+ +kk++k+n spl+l+fl+g+ ey+CtpWgnpt+nv+GwqkPCYll++gyak+fkel+e+t+weky
  CCG92533.1 194 IMVSPGYSYQKAPDQEHFLQRNKTKELFKQILKDRKKSWKFNLSPLFLEFLQGNIEYDCTPWGNPTYNVFGWQKPCYLLQDGYAKSFKELMESTPWEKY 292
                 79************************************************************************************************* PP

     DUF3463 100 g.kgkdpkCanCmvhsgyEasavsdtvksllka 131
                 g ++ +pkCanCmvhsgyEa+av+dt+ s++  
  CCG92533.1 293 GfRSGNPKCANCMVHSGYEATAVNDTFGSWRGF 325
                 *999***********************999876 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.2   5.9e-20   2.6e-16       3     166 ..      33     185 ..      31     186 .. 0.96
   2 ?   -3.5   0.0       2.7   1.2e+04     115     128 ..     209     222 ..     189     235 .. 0.55

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 5.9e-20
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpdeeklerllel 100
                  ++  Cnl+C  C   +   ++   r l++e+  + ++e      +  v + ggepl+++++ +++e l++    ++ i + +n++l+ ++ l+++++ 
   CCG92533.1  33 PLFRCNLACAGCGKIQY-PDHILNRRLTPEQCWAAAEECG----APIVSIAGGEPLVHKEIDQIVEGLIRM---KRYIYLCSNALLL-RKRLDLFKPS 121
                  5668***********97.99*******************8....9*************************9...*************.********** PP

                  T-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 101 gvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleellel 166
                     ++s++l+ + +e + + ++r + +e  +e+++ + ++g++ v+++ +++ G n e +++++++
   CCG92533.1 122 KYLTFSIHLDGLKEE-HDESVCREGVYETAVEGIKEAVKRGFR-VTINSTLFDGANPERVKAFFDE 185
                  ***************.***************************.**************99998875 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.7
                  HHHHHHHTCTSHHH CS
                  xxxxxxxxxxxxxx RF
  Radical_SAM 115 ekvlklmnrghtfe 128
                  e +l++++ ++ f+
   CCG92533.1 209 EHFLQRNKTKELFK 222
                  33333333223332 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.4e-06    0.0062      14      74 ..      36      93 ..      21     131 .. 0.77
   2 ?    0.5   0.0      0.15   6.6e+02      68     109 ..     175     213 ..     171     235 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.4e-06
     Fer4_12 14 gCnlsCkgCfnketwsfksgkeftkelleeiiedlkkesiegltllGGEPllpenaealle 74
                +Cnl+C+gC   +  +   ++  t e    + e++     + +++ GGEPl++++ ++++e
  CCG92533.1 36 RCNLACAGCGKIQYPDHILNRRLTPEQCWAAAEEC---GAPIVSIAGGEPLVHKEIDQIVE 93
                7*********7777777777777766655555555...89************655544443 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.15
     Fer4_12  68 naeallelvkevkeekpekdiwlytgytleelskkekeellk 109
                 n e +  +++ev + ++e  i+++ gy++++  ++  e +l+
  CCG92533.1 175 NPERVKAFFDEVMRLGIE-GIMVSPGYSYQKAPDQ--EHFLQ 213
                 567778889999999996.6999999999888644..33333 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.8     1e-06    0.0045       7      90 ..      36     109 ..      33     131 .. 0.70
   2 ?   -2.4   0.0       1.2   5.2e+03      27      43 ..     214     230 ..     205     237 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1e-06
     Fer4_14   7 gCnlsCkgCdnketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletngt 90 
                 +Cnl+C gC + +  +  l+   t    eq    + ++e+ +  +++ GGePL +   ke++++v+ l + +    i l +n++
  CCG92533.1  36 RCNLACAGCGKIQYPDHILNRRLTP---EQCW--AAAEECGAPIVSIAGGEPLVH---KEIDQIVEGLIRMK--RYIYLCSNAL 109
                 7********8777333333333333...3334..6677787888*********99...67777777776666..5566666665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
     Fer4_14  27 kpqteelleqilkdlkk 43 
                   +t+el +qilkd kk
  CCG92533.1 214 RNKTKELFKQILKDRKK 230
                 56778888888876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2190.05
//
Query:       CCG92534.1  [L=91]
Description: Sec-independent protein translocase protein tatA/E homolog (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-18   65.8   0.2    1.7e-18   65.6   0.2    1.2  1  MttA_Hcf106  mttA/Hcf106 family
  ------ inclusion threshold ------
       0.04   14.4   0.1      0.056   13.9   0.1    1.2  1  BMFP         Membrane fusogenic activity


Domain annotation for each model (and alignments):
>> MttA_Hcf106  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.2     2e-22   1.7e-18       2      51 ..       9      58 ..       8      86 .. 0.92

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 2e-22
                 -HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH---XXX CS
  MttA_Hcf106  2 gapelliIlvValllFGpkkLPEvaraLGktLreFkkavkeleeenekea 51
                 +  e+  I+vV++llFG+kkLPE+ar+LGk+L eF ka  e e+e ++ a
   CCG92534.1  9 SGSEWFWIFVVVFLLFGAKKLPELARGLGKALGEFHKAKEEFEKEVRQAA 58
                 6789****************************************977665 PP

>> BMFP  Membrane fusogenic activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   6.2e-06     0.056       5      36 ..      27      58 ..      24      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.2e-06
        BMFP  5 rilddlakkvgdalpaaagvreeieknvravl 36
                ++l +la+ +g+al++  +++ee+ek vr+ +
  CCG92534.1 27 KKLPELARGLGKALGEFHKAKEEFEKEVRQAA 58
                67789************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 667.39
//
Query:       CCG92535.1  [L=119]
Description: hypothetical protein MFUM_700085 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 956.65
//
Query:       CCG92536.1  [L=311]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-11   43.3   0.6    6.7e-08   32.1   0.2    2.7  2  Cupin_2   Cupin domain
  ------ inclusion threshold ------
      0.059   13.0   0.1          6    6.5   0.0    2.8  2  Cupin_1   Cupin


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00014       1.3      17      55 ..      95     133 ..      81     144 .. 0.82
   2 !   32.1   0.2   7.5e-12   6.7e-08       4      69 ..     216     293 ..     213     295 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00014
                 SSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT.-EE CS
     Cupin_2  17 pgedeffyVleGegeltvdgeeveleaGdsvyfpag.tpH 55 
                   + e+fyV+ G g+ + +   ++ ++Gd+++ p     H
  CCG92536.1  95 ATS-ELFYVIAGCGHTETEWGAIPWKKGDLFVLPGIeAVH 133
                 345.*************99889*********999743555 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 7.5e-12
                 EEETTEEEEEECSSSEEEEEEEEESE.EEEE.EC....TE.......EEEEETTEEEEE-TT-EEEEEE-SSS-EEEEE CS
     Cupin_2   4 elppGesapshrHpgedeffyVleGe.gelt.vd....ge.......eveleaGdsvyfpagtpHrfrNtgdeparllv 69 
                  + pG+  ++hrH+   ++ +V+eG+ g++t ++    g        +++   G ++++p+g +H+++N+++e+a +l 
  CCG92536.1 216 IILPGTRQKPHRHQSV-ALDFVVEGRpGVYTrIGwelnGDgsireaaRIDWVSGSAFVTPPGWWHEHVNESSEDAYILP 293
                 689*************.*****************7777225577778***************************99885 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0    0.0059        52      54      92 ..      96     127 ..      81     161 .. 0.70
   2 ?    6.5   0.0   0.00067         6      83     108 ..     265     290 ..     197     298 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0059
                 S-EEEEEEESEEEEEEEETTSS.EEEEEE.EETTEEEEE- CS
     Cupin_1  54 ateiayvlqGegrvgfvvpgngnrdfhkk.lreGdvfvvP 92 
                 ++e++yv+ G+g++++           +   ++Gd+fv+P
  CCG92536.1  96 TSELFYVIAGCGHTET--------EWGAIpWKKGDLFVLP 127
                 4688888888888332........1222246777777777 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00067
                 EETTEEEEE-TT-EEEEEEESSSSEE CS
     Cupin_1  83 lreGdvfvvPaglvhfqynsgdepav 108
                    G +fv P+g+ h ++n   e+a 
  CCG92536.1 265 WVSGSAFVTPPGWWHEHVNESSEDAY 290
                 668****************9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2279.72
//
Query:       CCG92537.1  [L=584]
Description: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.5e-152  506.5   0.0   3.3e-102  342.2   0.0    2.1  2  GcpE        GcpE protein
  ------ inclusion threshold ------
       0.09   12.1   0.0       0.15   11.3   0.0    1.2  1  ATP_bind_2  P-loop ATPase protein family


Domain annotation for each model (and alignments):
>> GcpE  GcpE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.2   0.0  3.7e-106  3.3e-102       2     254 ..      17     292 ..      16     302 .. 0.98
   2 !  162.4   0.0   1.6e-51   1.5e-47     207     351 .]     430     575 ..     428     575 .. 0.98

  Alignments for each domain:
  == domain 1  score: 342.2 bits;  conditional E-value: 3.7e-106
                 --EEETTEEESTTS--EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHHTT-SS-EEEEE-SSCHHHHHHHHCC-SEEE CS
        GcpE   2 revkvgkvkiGgeapiavqsMtntdtadveatvkqikrlaeaGaelvRvtvqdeeeaealkeikeklkkkglkvplvaDihfnpklaleaaeagvdkvR 100
                 rev+vg+v +Gg +pi+vqsM+++dt+d+++++k++++l + G+++vR+t++++++a++l+ i++ l++ g++vp+vaDihf+p++a+eaa+  v+k+R
  CCG92537.1  17 REVRVGSVGLGGPHPIVVQSMLTSDTMDTDSCLKEAMELVDCGCQIVRITAPTVKDASNLEFIRKGLDQLGCNVPIVADIHFKPEAAMEAAKW-VEKIR 114
                 79*******************************************************************************************.***** PP

                 E-TTTSSSTTHH..................HHHHHHHHHHHHHHT-EEEEEEEGGG--HHHHHHHCCTHHHHHHHHHHHHHHHHHTT--GEEEEEE-SS CS
        GcpE 101 iNPGnigdgkkk..................eekvkelveaakekgtaiRiGvNhGSLskrllskygdtpealvesalefleilekldfkdiviSlKasn 181
                 iNPGn+ d +kk                  e+++ +l+e + ++++a+RiG+NhGSLs+r++++ygdtp+++vesale++++++k++f+div+S+Kasn
  CCG92537.1 115 INPGNFSD-RKKfiirsytdqeyneelrriEQTFLPLLEFCSKRKIALRIGTNHGSLSDRIMNRYGDTPHGMVESALEYATVCRKYGFHDIVFSMKASN 212
                 ********.5556************************************************************************************** PP

                 HHHHHHHHHHHHHH--.......S-EEE--TT-ECHHHHHHHHHHHHHHHHHTT--SEE---ECS-CCHHHHHHHHHHHH CS
        GcpE 182 vvvmveayrllaeeld.......yplHlGvTEAGegedgriksavgigaLLaegiGdTiRvSLtedpeeEvkvakeiLqa 254
                 +++m++ayrll+e+l+       yp+H+GvTEAG+gedgriksa+gig+LLa+giGdTiRvSLte+ ++E++vak+++  
  CCG92537.1 213 PRIMIAAYRLLVERLEklgedwnYPIHVGVTEAGDGEDGRIKSAIGIGSLLADGIGDTIRVSLTESSVHEIPVAKKLIAV 292
                 ***************************************************************************99865 PP

  == domain 2  score: 162.4 bits;  conditional E-value: 1.6e-51
                 -ECHHHHHHHHHHHHHHHHHTT--SEE---ECS-CCHHHHHHHHHHHHTTS--SS-EEEE----TTS-CHHHHHHHHHHHHCCCHHCG-EEEEESSTCC CS
        GcpE 207 AGegedgriksavgigaLLaegiGdTiRvSLtedpeeEvkvakeiLqalrlrksktelisCPsCgRtlfdlqelveeveealehlkkglkiavmGCiVN 305
                 A ++e+  i s++ ig+LL +giGd i +    dp   +  a++iLq ++ r  kte+++CPsCgRtlfdlq++++++++a++hl kglkiavmGCiVN
  CCG92537.1 430 AADKEKNLIASSLHIGSLLCDGIGDAILIRRDPDPSYALVLAYSILQGAGNRIVKTEYVACPSCGRTLFDLQSTTARIKKATGHL-KGLKIAVMGCIVN 527
                 66789999*****************************************************************************.************* PP

                 HHHHCCCSSEEEEEBT.TCEEEEETTEEE.ECEESSCHHHHHHHHHHH CS
        GcpE 306 GpgEaadAdlGivggk.gkvslykkkevv.kkvpeeeavdellelikk 351
                 GpgE+adAd+G+vgg+ gkv+ly++k+ v  ++pe+eav++l+elikk
  CCG92537.1 528 GPGEMADADFGYVGGApGKVNLYVGKKAVrFNIPEAEAVEALIELIKK 575
                 *************9999************89***************86 PP

>> ATP_bind_2  P-loop ATPase protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.7e-05      0.15     177     252 ..      92     168 ..      85     176 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.7e-05
                 TT-SEEEE-TTS--.....GGGSTTTTTS-TTSHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHSS-SEEEEEEEESSS CS
  ATP_bind_2 177 ldadlvfdvrflPn.....PhwveelrPltGkdkevaeyvlkrtevaefieklrsllslvlpslkregksyltiaiGctGG 252
                 +    v d+ f P+       wve++r   G+ ++ ++++ +    +e++e+lr++ +++lp l+  +k+++++ iG   G
  CCG92537.1  92 I----VADIHFKPEaameaAKWVEKIRINPGNFSDRKKFIIRSYTDQEYNEELRRIEQTFLPLLEFCSKRKIALRIGTNHG 168
                 4....4555555541111268*******************************************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4236.87
//
Query:       CCG92538.1  [L=478]
Description: Predicted membrane-associated Zn-dependent protease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-48  165.5   0.1    1.7e-48  165.1   0.1    1.1  1  Peptidase_M50   Peptidase family M50
    1.9e-22   78.8   0.0    2.7e-10   39.9   0.0    2.5  2  PDZ_6           PDZ domain
    4.3e-21   75.0   0.0    4.2e-10   39.8   0.1    2.3  2  PDZ_2           PDZ domain
    1.1e-16   60.9   0.1    2.2e-07   31.1   0.0    2.4  2  PDZ             PDZ domain
    0.00013   22.3   0.0      0.041   14.2   0.0    2.3  2  GRASP55_65      GRASP55/65 PDZ-like domain
     0.0033   17.4   0.0       0.13   12.3   0.0    2.5  2  Tricorn_PDZ     Tricorn protease PDZ domain
  ------ inclusion threshold ------
        2.9    7.5  10.7        0.4   10.3   0.9    2.9  3  Peptidase_M50B  Peptidase M50B-like


Domain annotation for each model (and alignments):
>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.1   0.1   6.7e-52   1.7e-48       2     248 ..      16     437 ..      15     439 .. 0.84

  Alignments for each domain:
  == domain 1  score: 165.1 bits;  conditional E-value: 6.7e-52
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx RF
  Peptidase_M50   2 filllgilvvvHElGHflvAklcgvkveefsigfGpkllsfkkgeteYaiallpLGGyVkmageepeeelseeeaka...flkkspwqrllivlAG 94 
                    +ill+ i++vvHElGHfl+Ak+ g+ ve+f++ fG  +++ + g+++Y++  +p GG+V + ++ p+ +++e++ ++   +   sp  +++++lAG
     CCG92538.1  16 VILLFNIMIVVHELGHFLAAKWRGLVVERFGVWFGHPIWKKEIGGVTYSLGWIPAGGFVALPQMIPNDNKEENNGQEkssLPPVSPKDKIIVALAG 111
                    5899**********************************************************9998887666655555568889999********* PP

                    XXXXXXXXXXXXXX.................................................................................. CS
                    xxxxxxxxxxxxxx.................................................................................. RF
  Peptidase_M50  95 planfilailvfvv.................................................................................. 108
                    pl+ ++lai++++v                                                                                  
     CCG92538.1 112 PLFSLLLAIVFALVvyvvgrpvsesemttvigyvmkdspayraglqpgdkivsidghpvsrfqgmdndsvtwniirsegstiavevdrngkklrfn 207
                    ***********9999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                    ..........................................................................-EEECE...CTTTSCEE-SEEE CS
                    ..........................................................................xxxxxx...xxxxxxxxxxxxx RF
  Peptidase_M50 109 ..........................................................................pkkske...seeekrgviGvsp 127
                                                                                              +        ++ ek+ ++ ++p
     CCG92538.1 208 vvpvkeeksafqrkglrqifimpaqtptvakvfpgspadaasiqpndqilevdgqklyspfllndyvsshpqkeM----TlliKRGEKTFSVRIKP 299
                    998888888888888888888888888888888888888888888888888888888888888888887744330....24444444444444444 PP

                    C-.............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX CS
                    xx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 128 kp.............vkkegllealkegvektlkvvvltvkalgklitg..klslktlggpisiaqlaseaae..aglssflqllalisvnLgilN 206
                     +               + +++ +  + +e++  +v +++++l+ l+    ++++++l+gpi+i ++    +e  +g+   l++ +l +vn +++N
     CCG92538.1 300 MTpegenvprigilwDLNGQMTLSHPTPLEQLKASVSAMFNVLQALLSPksDIKPQHLSGPIGIMRFYYMLFEspHGWRLALWFSVLFNVNAALIN 395
                    44667776666666633555555666677888888999999999999875688889************9888733588899*************** PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 207 LlPipvLDGghllfalleairrkplserkeevanlvglalll 248
                    L+PipvLDGgh+l  l+e+ir++pls +  e+++ v + ll+
     CCG92538.1 396 LFPIPVLDGGHILLGLVEWIRGRPLSLKLLEALQTVFATLLI 437
                    ********************************9999988876 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.1e-13   2.7e-10       1      30 [.     141     170 ..     141     176 .. 0.92
   2 !   36.4   0.0   1.3e-12   3.4e-09       2      56 .]     236     288 ..     235     288 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.1e-13
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpv 30 
                 v+  V ++sPA+rAGl++GD i+s++G+pv
  CCG92538.1 141 VIGYVMKDSPAYRAGLQPGDKIVSIDGHPV 170
                 5788*************************9 PP

  == domain 2  score: 36.4 bits;  conditional E-value: 1.3e-12
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvvlvvrr 56 
                 V  V pgsPAd A ++++D+il+v+Gq +  +s+  + +++ +++ ++++l+++r
  CCG92538.1 236 VAKVFPGSPADAASIQPNDQILEVDGQKL--YSPFLLNDYVSSHPQKEMTLLIKR 288
                 78899************************..**********************98 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   1.6e-13   4.2e-10      15      80 ..     139     208 ..     128     209 .. 0.79
   2 !   32.9   0.0   2.4e-11   6.2e-08      14      81 ..     232     298 ..     213     298 .. 0.89

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 1.6e-13
                 -EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHH..HHHH..TS-TT-EEEEEEEETTEEEEEEE CS
       PDZ_2  15 gvlvvsVkeggPaakaglkagDvilkvdgkkvksledli..slll..kkkpGdtVkltvlRdgkkktvev 80 
                   ++  V +++Pa +agl++gD+i+++dg++v+  + ++  s  +   +++G+t+ ++v R+gkk+ ++v
  CCG92538.1 139 TTVIGYVMKDSPAYRAGLQPGDKIVSIDGHPVSRFQGMDndSVTWniIRSEGSTIAVEVDRNGKKLRFNV 208
                 445556**************************6655555434444445899***************9988 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 2.4e-11
                 .-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEEE CS
       PDZ_2  14 ggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvevk 81 
                 +  +v++V +g+Pa++a ++++D+il+vdg+k+  ++ l + + +  p+++ +l ++R+ k+ +v +k
  CCG92538.1 232 QTPTVAKVFPGSPADAASIQPNDQILEVDGQKL-YSPFLLNDYVSSHPQKEMTLLIKRGEKTFSVRIK 298
                 4679*****************************.778888888888899***********99988875 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   8.7e-11   2.2e-07      24      66 ..     136     178 ..     126     198 .. 0.84
   2 !   27.5   0.0   1.1e-09   2.9e-06      23      58 ..     219     264 ..     192     267 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 8.7e-11
                 SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHH CS
         PDZ  24 gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheea 66 
                  +++ ++  v+++++a ++gl++GDkI+s++g +v+ ++ +++
  CCG92538.1 136 SEMTTVIGYVMKDSPAYRAGLQPGDKIVSIDGHPVSRFQGMDN 178
                 458999*****************************99987766 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 1.1e-09
                 S..........SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEET CS
         PDZ  23 r..........gdkgifvsevlpggaaeadglkvGDkIlsvNgvdv 58 
                 +           +++  v++v pg++a+a+ ++++D+Il+v+g+++
  CCG92538.1 219 QrkglrqifimPAQTPTVAKVFPGSPADAASIQPNDQILEVDGQKL 264
                 05555556666678899*******8888888*************86 PP

>> GRASP55_65  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0065        17      47      73 ..     142     167 ..     129     216 .. 0.75
   2 !   14.2   0.0   1.6e-05     0.041      46     114 ..     235     300 ..     223     313 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0065
                 EEEEBTTSHHHHHT--TTTEEEEEEE. CS
  GRASP55_65  47 vldvlegsPaakagLvpksDYiiGldk 73 
                 +  v ++sPa +agL+p  D i+ +d 
  CCG92538.1 142 IGYVMKDSPAYRAGLQPG-DKIVSIDG 167
                 446899**********95.77888876 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.6e-05
                 EEEEEBTTSHHHHHT--TTTEEEEEEE.SSSSSTSCSHHHHTTTSSS-EEEEEEETTTTEEEEEEE--- CS
  GRASP55_65  46 hvldvlegsPaakagLvpksDYiiGldkgllkgeedlselveaheekelkLlvYnsesdevrevtvkps 114
                  v +v +gsPa+ a+++p+ D i+ +d + l +   l + v++h +ke++Ll+     +++ +v +kp 
  CCG92538.1 235 TVAKVFPGSPADAASIQPN-DQILEVDGQKLYSPFLLNDYVSSHPQKEMTLLIK--RGEKTFSVRIKPM 300
                 678999**********995.99*****************************994..3444455555555 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   4.9e-05      0.13      30      81 ..     148     202 ..     144     209 .. 0.70
   2 ?    2.4   0.0     0.058   1.5e+02      41      81 ..     251     291 ..     236     297 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.9e-05
                  B-GGGGGS---.TT-EEEEETTEE-BTTB-HHH.....HHHTTTTSEEEEEEE-STT CS
  Tricorn_PDZ  30 rSPLaepGvnvreGdlilavdgepvskekgiae.....lLvgkagkeveLtvkrkdg 81 
                   SP  + G++   Gd i+++dg+pvs+ +g+++      ++  +g+++ ++v r+++
   CCG92538.1 148 DSPAYRAGLQ--PGDKIVSIDGHPVSRFQGMDNdsvtwNIIRSEGSTIAVEVDRNGK 202
                  6888899999..8*************9877764211114555666777777766554 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.058
                  .TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-STT CS
  Tricorn_PDZ  41 reGdlilavdgepvskekgiaelLvgkagkeveLtvkrkdg 81 
                  +  d il+vdg+++ +   ++ +  ++ +ke++L +kr+++
   CCG92538.1 251 QPNDQILEVDGQKLYSPFLLNDYVSSHPQKEMTLLIKRGEK 291
                  46689*********999999999999999999998888654 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.9   0.00016       0.4      19      60 ..      18      66 ..       6      76 .. 0.73
   2 ?    3.1   0.0     0.025        64      66      88 ..     104     126 ..      90     145 .. 0.87
   3 ?   -1.8   0.9      0.76     2e+03      92     134 ..     376     416 ..     356     451 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
  Peptidase_M50B 19 pfkllvvffHElGHalaalLtGgrvkgielhsd.......esGvtvtrg 60
                    ++ ++ +++HElGH laa+  G  v+++ +           +Gvt++ g
      CCG92538.1 18 LLFNIMIVVHELGHFLAAKWRGLVVERFGVWFGhpiwkkeIGGVTYSLG 66
                    45567789**************999999886665566655667776666 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.025
  Peptidase_M50B  66 qiltllaGYlgpallGlllills 88 
                     +i+++laG+l + ll ++++l+ 
      CCG92538.1 104 KIIVALAGPLFSLLLAIVFALVV 126
                     68999*********999999876 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.76
  Peptidase_M50B  92 karlllvllvllllvllllvrnlfglvlllllgallllvllla 134
                      +rl+l++ vl+ +   l   nlf++ +l +  +ll lv +++
      CCG92538.1 376 GWRLALWFSVLFNVNAAL--INLFPIPVLDGGHILLGLVEWIR 416
                     344444444333332222..24555555544445555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3219.04
//
Query:       CCG92539.1  [L=384]
Description: 1-deoxy-d-xylulose 5-phosphate reductoisomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-40  137.5   0.0      3e-40  136.3   0.0    1.7  1  DXP_redisom_C    1-deoxy-D-xylulose 5-phosphate reductoisomer
    1.5e-35  122.0   0.0    2.6e-35  121.2   0.0    1.4  1  DXPR_C           DXP reductoisomerase C-terminal domain
    2.5e-33  115.6   0.1    3.9e-33  114.9   0.1    1.3  1  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer
  ------ inclusion threshold ------
      0.075   12.9   0.0       0.13   12.1   0.0    1.4  1  YjeF_N           YjeF-related protein N-terminus


Domain annotation for each model (and alignments):
>> DXP_redisom_C  1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   0.0   6.6e-44     3e-40       1      84 []     143     226 ..     143     226 .. 0.99

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 6.6e-44
                    EEE-SHHHHHHHHHSGCCCCTTEEEEEEEE--GTTTTS-HHHHCT-SHHHHHS-SS----HHHHHHHHHSHHHHHHHHHHHHHC CS
  DXP_redisom_C   1 ilpvDsEhsaifqllkeekkkevekiiltasGGpfrklkleeleevtveealkhPnWsmGkkitvdsatlmNkglEvieakllf 84 
                    i+pvDsEhsaifq+++ e+ +++++iiltasGGpfr ++le+l++vtv+eal+hP+W+mGkkit+dsa+l+NkglE+iea++lf
     CCG92539.1 143 IIPVDSEHSAIFQCIRGEDCRALKRIILTASGGPFRGYTLEQLKKVTVAEALNHPTWKMGKKITIDSASLFNKGLEMIEAHHLF 226
                    79*********************************************************************************9 PP

>> DXPR_C  DXP reductoisomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.0   5.7e-39   2.6e-35       1     113 [.     258     373 ..     258     375 .. 0.97

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 5.7e-39
                 E-SS-THHHHHHHHHTTS-...------HHHHEEEEEB---TTTTCHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTSS-TTHHHHHHHHHHHTTT. CS
      DXPR_C   1 LgtpDMrlpIayaLayper...gverldlaklgsltFekpdlerFpclklayealkaggtapavlnAAnEvaveaFlegkisFldIaeiieevleseek 96 
                 L++ DM lpI++++++per    v++l+l+++g+ltFe+pd++ Fp+l+la+ a++a gt+p++lnAAnEvaveaFlegkisF +I e+++ +l+++++
  CCG92539.1 258 LSHSDMCLPIQFSFTFPERlpsPVRQLNLYEVGTLTFESPDHKSFPALRLARFAGEAAGTYPCALNAANEVAVEAFLEGKISFSQIWECVSYILDTHRQ 356
                 7899***************7655**************************************************************************** PP

                 ...SSHHHHHHHHHHHH CS
      DXPR_C  97 seaksledileldaear 113
                  ++  le+i+++d+  r
  CCG92539.1 357 IQNPGLEEIIQADELSR 373
                 *************9887 PP

>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.1   8.8e-37   3.9e-33       1     129 []       5     129 ..       5     129 .. 0.97

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 8.8e-37
                      EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHCHTT-SEE CS
  DXP_reductoisom   1 vviLGsTGSIGtqtLdvieenpdkfevvalaagsnvellaeqakefkpklvavadeeaaeelkealkekelktevlvGeealkelaeeeeadvv 94 
                      vviLGsTGSIG+++L+v ++ ++++e+v+laag++ ell +q++efkpk  a+ +++++ e  ++l+    + + l G+++l+el+ee ead+v
       CCG92539.1   5 VVILGSTGSIGRSALEVARKLSERIEIVGLAAGTQSELLRRQCHEFKPKAFALWKASSKPEWFNELA----TSKGLWGPNSLNELIEEVEADIV 94 
                      79********************************************************999999995....5889******************* PP

                      EE--SSGGGHHHHHHHHHTTSEEEE--SHHHHHHH CS
  DXP_reductoisom  95 vaaivGaaGLkptlaaikagkriaLANKEsLVvaG 129
                      + aivG+ GL+ptl+ai++++ +aLA KE LV+aG
       CCG92539.1  95 LVAIVGTGGLEPTLRAIDKKALLALASKEILVMAG 129
                      **********************************9 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.9e-05      0.13      27     138 ..       3     128 ..       1     131 [. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.9e-05
      YjeF_N  27 kkvlvlvGsgnnGgdglaaArhLaqegakVtvllleeeekldedaeralellkkaggkvveekpeedleekls.................apvdlviDA 108
                 kkv++l + g  G  +l +Ar L ++   V +        ++e  +r+ +++k     + + +++ ++ ++l                   ++d+v+ A
  CCG92539.1   3 KKVVILGSTGSIGRSALEVARKLSERIEIVGLAAG----TQSELLRRQCHEFKPKAFALWKASSKPEWFNELAtskglwgpnslnelieeVEADIVLVA 97 
                 89*********************555444666433....55666666666666544444444444444444334899***********9999******* PP

      YjeF_N 109 llGi.glrgelreelaeliewlnsseapvla 138
                 ++G+ gl+  lr+  ++++  l s+e +v+a
  CCG92539.1  98 IVGTgGLEPTLRAIDKKALLALASKEILVMA 128
                 ****656677777666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2730.34
//
Query:       CCG92540.1  [L=120]
Description: 50S ribosomal protein L20 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-40  136.3  12.3    4.5e-40  136.1  12.3    1.0  1  Ribosomal_L20  Ribosomal protein L20


Domain annotation for each model (and alignments):
>> Ribosomal_L20  Ribosomal protein L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.1  12.3   2.5e-44   4.5e-40       1     105 [.       3     107 ..       3     109 .. 0.98

  Alignments for each domain:
  == domain 1  score: 136.1 bits;  conditional E-value: 2.5e-44
                    XXX.XXXXXXXXXXXXX--SSS---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHCCTTS---HHHHHHH CS
  Ribosomal_L20   1 RvkrgvaarkrrkkilklakgyrgrrsklyrvakqavekalqyayrdRkkkkrdfrklwitrinaaarenglsYskfingLkkanielnRkvLadl 96 
                    R++++va+rkrrk++l+ a+g+rgrrskl+r ak+a+ ka   ayrdRk++kr+fr+lwi+rinaa+r+ gl+Ys+f+++Lkka+i +nRk+La+l
     CCG92540.1   3 RATNSVASRKRRKRLLRSARGFRGRRSKLFRYAKDALYKARYWAYRDRKTRKREFRALWIQRINAACRNSGLTYSRFMEALKKAGIIMNRKMLAEL 98 
                    7899******************************************************************************************** PP

                    HHH-HHHHH CS
  Ribosomal_L20  97 AindpeaFk 105
                    A++  e F+
     CCG92540.1  99 AVRSSEDFN 107
                    *******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 800.34
//
Query:       CCG92541.1  [L=205]
Description: Translation initiation factor IF-3 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-30  103.6   0.1    4.6e-29  100.5   0.0    2.2  2  IF3_N            Translation initiation factor IF-3, N-termin
    4.6e-28   97.0   0.4    9.1e-28   96.1   0.4    1.5  1  IF3_C            Translation initiation factor IF-3, C-termin
     0.0065   16.7   0.6      0.019   15.2   0.6    1.8  1  Pep_M12B_propep  Reprolysin family propeptide


Domain annotation for each model (and alignments):
>> IF3_N  Translation initiation factor IF-3, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.0   7.6e-33   4.6e-29       1      69 [.      18      86 ..      18      87 .. 0.98
   2 ?    0.6   0.0      0.11   6.8e+02      22      49 ..     136     163 ..     108     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 7.6e-33
                ETTS--SSEEEEE-SSS-EEEEEEHHHHHHHHHHHTSEEEEEESSSSS-EEEEE-HHHHHHHHHHHHHH CS
       IF3_N  1 iNeqIrarevrlvdedGeqlGvistreAlrlaeekgldLVevspnaepPVcrimdygkfrYeqkkkeke 69
                iN+ Irarev ++d++G++lGv++++eA ++a+++gldLVevsp a+pPVc+i+dygk++Y ++kkek+
  CCG92541.1 18 INNAIRAREVLVIDSTGKSLGVLPIHEAQQRAQQQGLDLVEVSPHANPPVCKILDYGKYKYSLSKKEKD 86
                8******************************************************************97 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.11
                 EEEHHHHHHHHHHHTSEEEEEESSSSS- CS
       IF3_N  22 vistreAlrlaeekgldLVevspnaepP 49 
                 + + + Al+l++++  dL  v ++ + P
  CCG92541.1 136 ITHQDLALNLMKRLIQDLAHVGQTDQEP 163
                 6677889999999999999999887766 PP

>> IF3_C  Translation initiation factor IF-3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.4   1.5e-31   9.1e-28       2      85 ..      93     176 ..      92     177 .. 0.97

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 1.5e-31
                 -EEEEEEESS--HHHHHHHHHHHHHHHHHT-EEEEEEE--S-TTSHHHHHHHHHHHHHHHTTTTEEEEEEEEE-SSEEEEEEEE CS
       IF3_C   2 evKEiklrpkidehDlevKlknarkFLeegdkvKvtlrfrGReiahkelgkevleriaeeleevakvekkpklegrqmimvlap 85 
                 ++KEi+l+++i+ehD+ +Klk+a+ F+++g kvK++l++rGRei+h++l+ ++++r++++l++v++++++pkl gr++++++ p
  CCG92541.1  93 KLKEIQLHVNINEHDFLIKLKQAEAFMAKGMKVKFNLFLRGREITHQDLALNLMKRLIQDLAHVGQTDQEPKLAGRNISLTFIP 176
                 79****************************************************************************998876 PP

>> Pep_M12B_propep  Reprolysin family propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.6   3.2e-06     0.019      22      69 ..      81     128 ..      69     205 .] 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.2e-06
  Pep_M12B_propep  22 krrrRslseeeekeerlsyrlkafgkefhLnLepnsellapgftveth 69 
                      +++++++++ ++k +++++++++++++f ++L++ + ++a+g+ v++ 
       CCG92541.1  81 SKKEKDSKKGATKLKEIQLHVNINEHDFLIKLKQAEAFMAKGMKVKFN 128
                      445555556666699*****************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1462.15
//
Query:       CCG92542.1  [L=615]
Description: threonyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-38  133.0   0.0    1.9e-38  132.2   0.0    1.3  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    2.7e-19   69.1   0.7      7e-19   67.8   0.1    2.1  2  HGTP_anticodon  Anticodon binding domain
    2.5e-15   56.3   0.1    7.4e-15   54.8   0.0    1.9  2  tRNA_SAD        Threonyl and Alanyl tRNA synthetase second ad


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2   0.0   3.2e-42   1.9e-38       8     178 ..     299     506 ..     293     507 .. 0.93

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 3.2e-42
                   SEEEEE-SSSHHHHHHHHHHHEEEB.GGSSEEEEEEEEEEBTTTS.TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SCEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   8 dreyiLkPtneetfvelirdevlrs.krLPlklyqiqtkyRdEks.dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglefraii 102
                      y LkP+n++ ++++++ +  rs k+LP++l++++t+yR Eks +++GL+Rvr+F+q+d+++f+ e++++ +l  ++++++ + e+lgl   + +
    CCG92542.1 299 VSGYLLKPMNCPMHIRIFSSK-PRSyKDLPIRLAEFGTVYRFEKSgELSGLTRVRGFTQDDAHIFCMESQVEAELLSCLELVKVVVEKLGLTDAKAR 394
                   5679***************99.9**888****************999********************************************876665 PP

                   EE.GTTSC...................................BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEE CS
                   xx.xxxxx...................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 103 el.msaks...................................adykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksvimic 163
                   +   ++ +                                   a+y++k +f + +  +++ +++gt+q +  +l+ r++++++ e++++++++mi+
    CCG92542.1 395 LGlRGEDKekyvgsaeswqkaerdlrkaaedsginfveelgeaAFYGPKVDFLVKDA-IGRLWQLGTVQLD-YNLPLRFSLSYVGEDGNKERPVMIH 489
                   55333333679999999***********************************99999.*************.9************************ PP

                   EE.EE.HHHHHHHHHHH CS
                   xx.xx.xxxxxxxxxxx RF
  tRNA-synt_2b 164 aa.ig.veRllsaileq 178
                   +a +g +eR+l++++e+
    CCG92542.1 490 RApFGsMERFLAILIEH 506
                   ***************98 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   6.4e+03      78      92 ..     281     295 ..     277     300 .. 0.46
   2 !   67.8   0.1   1.2e-22     7e-19       1      91 [.     519     606 ..     519     609 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
                     EEEEEETTHHHHHHH CS
  HGTP_anticodon  78 eqervsldelveklk 92 
                     eq ++s +el++ l+
      CCG92542.1 281 EQKQMSCAELANRLE 295
                     344444444444333 PP

  == domain 2  score: 67.8 bits;  conditional E-value: 1.2e-22
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelvekl 91 
                     qv vipl++   ++ +y +k+ e L+++ +rv ld +ne++g kir a+l ++p++++vG+ke +  tv+vr+ +++   +++l+ +++ l
      CCG92542.1 519 QVRVIPLSD---AFVPYGQKVTELLQQHKFRVTLDRKNETLGAKIRIAQLEKVPYMLIVGKKEEQMSTVSVRTAKKGNLGEMELEAFLSLL 606
                     89*******...9***************************************************99*******************999876 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   1.2e-18   7.4e-15       3      44 .]     121     168 ..     119     168 .. 0.93
   2 ?   -3.4   0.1       1.9   1.1e+04      18      30 ..     244     256 ..     243     259 .. 0.79

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 1.2e-18
                 EEEETT.EEEEESS---SBGGGC-SEEEE.......CCECCCTCEEEEE CS
    tRNA_SAD   3 vvsiGdisvelCgGtHvpnTgeIgafkil.......seesiakglrRIy 44 
                 +++   ++++lC G+Hv+nTg I+ fk++       ++++++++l+RIy
  CCG92542.1 121 LYQND-HFIDLCAGPHVENTGLIKGFKLThvssayyKGDEKNPQLQRIY 168
                 56666.8*****************************************9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.9
                 --SBGGGC-SEEE CS
    tRNA_SAD  18 HvpnTgeIgafki 30 
                 H p++g + +f+i
  CCG92542.1 244 HTPHIGSLDLFRI 256
                 8888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 4058.40
//
Query:       CCG92543.1  [L=279]
Description: Prolipoprotein diacylglyceryl transferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-65  220.5  13.4    2.2e-65  220.3  13.4    1.0  1  LGT       Prolipoprotein diacylglyceryl transferase


Domain annotation for each model (and alignments):
>> LGT  Prolipoprotein diacylglyceryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.3  13.4   1.2e-69   2.2e-65       5     241 ..      15     261 ..      11     262 .. 0.91

  Alignments for each domain:
  == domain 1  score: 220.3 bits;  conditional E-value: 1.2e-69
                 xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         LGT   5 si.gpleirwYgllialgfllavllakrrakkeglkeek.dkvddlliyavilgii.GaRlgyvlfY....ylsnpleilkiwegGlaihGgligvlla 96 
                 ++   + ir+Ygl++algfl+ ++ ++++ k+ g+ + +  +vddl++++++ g++ G+Rlgy+l Y     +++p++i++iw+gG+++hGg+igvl++
  CCG92543.1  15 QFsEGIGIRYYGLAYALGFLFLWIGLRWQRKR-GWLKLSiRQVDDLVFWIALGGVLiGGRLGYCLLYdfthIIHEPWSIFEIWKGGMSSHGGIIGVLIV 112
                 4444599**********************999.887766689*************9***********777655999*********************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
         LGT  97 lllyakkkklsflkvlDivapvvalgqaigRlGNfingelyGkptdlpwglvfkkaeelp...lprhPtqlYes.lenlllflilllllskkkkkkkkd 191
                 l + a k +++f++++D+++ ++++g ++gRl+Nfingel+G+pt+lpw+++f++a  ++   +prhP+qlYe+ le+++lf +l +++     + k++
  CCG92543.1 113 LSIAAYKWNIPFFQIADAATWCAPIGIFFGRLANFINGELWGRPTTLPWAVIFPEAPLVNgqaVPRHPSQLYEAfLEGVVLFGVLTYIRL----HVKTT 207
                 *****777********************************************9998777777799********************99664....34568 PP

                 xxxxxxxxxxxxxxxxxxxxxx.xxx...xxxxxxxxxxxxxxxxxxxxxxxxx RF
         LGT 192 gevfglylilyglgRffiEflR.tds...lllgslrmgqllsiplvlagialli 241
                 g v++ +l++y+l+R++ E +R +d     ++g l+ gqlls++ +l++++l++
  CCG92543.1 208 GLVSIGFLFFYSLLRILGECFRePDAhigYYFGFLTQGQLLSLLTLLLSFILFY 261
                 ***********************9*656666699**************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1896.10
//
Query:       CCG92544.1  [L=58]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.43    9.0   2.0       0.41    9.0   2.0    1.0  1  Cytomega_UL84  Cytomegalovirus UL84 protein
        1.9    8.7  10.1          2    8.6  10.1    1.1  1  TSGP1          Tick salivary peptide group 1
        2.7    8.0   5.6        1.7    8.7   1.4    2.0  2  DUF2116        Uncharacterized protein containing a Zn-ribbon


Domain annotation for each model (and alignments):
>> Cytomega_UL84  Cytomegalovirus UL84 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.0   6.9e-05      0.41     127     176 ..      10      56 ..       2      58 .] 0.52

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 6.9e-05
  Cytomega_UL84 127 illstplqlgeangesqtapatsqeeetaashepekkkekeekkeeeded 176
                    +++s  l +g   g ++      q+e     +     k k+ekkee+ e+
     CCG92544.1  10 VVMSLSLAFGPICGIAKPKAEQVQDESKPEKKTK---KHKKEKKEEKKEE 56 
                    5566667777777766655555555544443333...3344444444433 PP

>> TSGP1  Tick salivary peptide group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  10.1   0.00034         2      87     119 ..      28      57 ..      17      58 .] 0.64

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00034
       TSGP1  87 kdsddgdpaetekpkkkkkkekktkkkkekkkk 119
                 k +   + +++ kp kk kk+kk+kk+++k++k
  CCG92544.1  28 KAE---QVQDESKPEKKTKKHKKEKKEEKKEEK 57 
                 444...344555677777777777777776665 PP

>> DUF2116  Uncharacterized protein containing a Zn-ribbon (DUF2116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2     0.039   2.3e+02      36      50 ..       2      16 ..       1      19 [. 0.73
   2 ?    8.7   1.4   0.00029       1.7       7      38 ..      20      51 ..      17      54 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.039
     DUF2116 36 arsqqilfgililll 50
                ++  +ilf+++ l l
  CCG92544.1  2 KNITKILFVVMSLSL 16
                677889999887755 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00029
     DUF2116  7 ivCGkaIpldesfCsekCqeeyekkrkkvars 38
                ++CG a p+ e++ +e   e+ +kk kk ++ 
  CCG92544.1 20 PICGIAKPKAEQVQDESKPEKKTKKHKKEKKE 51
                79**************9999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2503  (0.139606); expected 358.6 (0.02)
Passed bias filter:                      788  (0.0439511); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 435.57
//
Query:       CCG92545.1  [L=529]
Description: Uncharacterized AIPM/Hcit synthase family transferase aq_356 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-46  157.4   0.0    7.3e-46  156.9   0.0    1.2  1  HMGL-like   HMGL-like
    4.7e-25   88.0   0.0    3.2e-24   85.3   0.0    2.1  2  LeuA_dimer  LeuA allosteric (dimerisation) domain


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.9   0.0   8.1e-50   7.3e-46       4     263 ..      11     279 ..       8     280 .. 0.89

  Alignments for each domain:
  == domain 1  score: 156.9 bits;  conditional E-value: 8.1e-50
                 EEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B...........--EE-SSHHHHHHHHH....TT-SEE CS
   HMGL-like   4 ivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkar.........ilalvrarekdikaavealkgagakrv 93 
                 + dttLRDG q +   +s+++kl+iak Lde+g+++iE g p + ++df +  ++++   k++           +l+  ++++i+   e    a+  +v
  CCG92545.1  11 LYDTTLRDGAQGEDIHFSLSDKLRIAKRLDEFGIAYIEGGWPGSNPKDFSFFSQVKSLNLKQAkiaafgstrKAMLAVEEDQQIRLLLE----AQSPVV 105
                 78******************************************************987777443322223344444445555555555....****** PP

                 EEEEES-HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-ETTT-BTTTB...S--HHHHHHHHHHHHHHT-SEEEEEETTS---HHHHHHHHHHHHHHS- CS
   HMGL-like  94 hvfiatselhlkaklkkdreevakkaeeavkaarslgkdvelsledas...rtdleflaevveaaeeaGatriniaDtvGvltPneaaelisalkervk 189
                  ++     lh+  +l+ + +e ++++++ v++ +s+g +v + +e +    +++ e++++ ++aaeeaGa+ i + Dt G   P e++++ s++ + +k
  CCG92545.1 106 TIVGKSWLLHVLEVLRTSEKENLAMIRDSVQFLKSHGREVIFDAEHFFdgyKSNKEYALQCIKAAEEAGADFIVLCDTNGGSLPWEIGQITSEVCSSCK 204
                 ******************************************999886333799********************************************* PP

                 .GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT...-B----HHHHHHHHHH CS
   HMGL-like 190 dkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealg...vdtgldlqklrsiaal 263
                   v++ +H+Hnd  lAvan+l A++ Ga++v gt+nG Ger+Gn+ l  ++a+le +    v ++ +l++lr+++ +
  CCG92545.1 205 --VPIGIHTHNDGELAVANALWAIKSGARQVQGTINGYGERTGNCNLISVIANLELKMgqkVLPDGKLKELRELSLF 279
                 ..****************************************************97655669999999999988765 PP

>> LeuA_dimer  LeuA allosteric (dimerisation) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.088   7.9e+02      79     121 ..     160     202 ..     156     207 .. 0.81
   2 !   85.3   0.0   3.6e-28   3.2e-24       3     132 ..     381     521 ..     379     522 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.088
                 EEEEEE--TT-TT--EEEEEEEE--GGGEEEEEEEESSHHHHH CS
  LeuA_dimer  79 ldYsvhaitegtdaqaevrVelevddgkkvsgvGvdsdiveAS 121
                 ++Y ++ i++ ++a a+  V + +++g+  + +G  ++ v +S
  CCG92545.1 160 KEYALQCIKAAEEAGADFIVLCDTNGGSLPWEIGQITSEVCSS 202
                 68*********************88888777666655555555 PP

  == domain 2  score: 85.3 bits;  conditional E-value: 3.6e-28
                 XXXXXXXXXXXXXXXXX--EEEEEEEEEEETT.....CEEEEEEEEEE.TTEEEEEEEE-SSHHHHHHHHHHHHHHH......T-EEEEEEEE--TT-T CS
  LeuA_dimer   3 tdedlealvkdelleaeerlkleklqvssged.....elstatvklevkdgeekeasaeGnGpvdAllnAlrkalgv......dikLldYsvhaitegt 90 
                 +++++  l+++ l +  +++ l++++vs  +      ++ +at+k+ +  ge++ + aeG+Gpv+Al++Alr+al +      +++L+dY+v++i + +
  CCG92545.1 381 AEASFALLLRKLLSPYPSFFHLLEYHVSIRQLpsknyKVCEATIKISI-HGERVYTVAEGDGPVHALDRALREALVKfypaigQLRLEDYKVRIIDSTE 478
                 57788888888888888**********998888777889999999999.99999*********************9999877777************** PP

                 T--EEEEEEEE--GGGE.EEEEEEESSHHHHHHHHHHHHHHHH CS
  LeuA_dimer  91 daqaevrVelevddgkk.vsgvGvdsdiveASlkAlisalnrl 132
                 ++ ++ rV +e++dgk+ +s+vGv++diveAS+ Al++++++ 
  CCG92545.1 479 GTASSIRVWVESTDGKEiWSTVGVSHDIVEASWLALFDSIEYW 521
                 ************997776*********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3340.06
//
Query:       CCG92546.1  [L=112]
Description: Ribosome-associated protein Y (PSrp-1) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-18   67.7   0.2    1.5e-18   67.4   0.2    1.1  1  Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosoma


Domain annotation for each model (and alignments):
>> Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.2   8.1e-23   1.5e-18       3      85 ..       2      96 ..       1      97 [. 0.83

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 8.1e-23
                     EEECTS---HHHHHHHHHHHCCGGGG....-EEEEEEE.........EE.EEEEEEEEECTTEEEEEEEEESSHHHHHHHHHHHHHHHHHHCHHTT CS
  Ribosomal_S30AE  3 itgrnievtdalkeyvekklekleky...fieadVtls.........kk.kkvevtirlakgkviraeeesedlyaaidlavdklerqlrkykekl 85
                     i++  +++tdal +++e+k+ekl ++   + +a+ +++         ++ + +++++++ +gk+i ae++ +dly+a+dl vd+l rqlrk+k+ l
       CCG92546.1  2 ISSPTLKLTDALHNHIESKFEKLTRIndrILSAQLNIHhepskadisHQaFCIKARLYI-PGKDIVAEDRGHDLYQAVDLIVDRLARQLRKRKTDL 96
                     5666789*****************99665477777777658766655448889999955.5********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 810.38
//
Query:       CCG92547.1  [L=576]
Description: Oligoendopeptidase F [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-42  145.8   0.8      7e-42  144.2   0.1    2.0  2  Peptidase_M3  Peptidase family M3
  ------ inclusion threshold ------
       0.62   10.3   2.3        4.4    7.6   0.1    3.1  4  DUF5055       Domain of unknown function (DUF5055)


Domain annotation for each model (and alignments):
>> Peptidase_M3  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.37   3.3e+03     304     362 ..     104     160 ..     100     171 .. 0.70
   2 !  144.2   0.1   7.8e-46     7e-42       2     452 ..     179     559 ..     178     564 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.37
                   -B--HHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHCTT-TCC.GHH....HHHHHHHHHH CS
  Peptidase_M3 304 eaipeelleklikaknvnaalellrqlvfaafdqelHeeaee.eqilkkdlletyaelrk 362
                   +ai+++l+e+ +  k+ ++++++++  v++++  ++++e++  ++i++++l++ y+++  
    CCG92547.1 104 IAILKKLVENPF-FKELEESYNVFKRSVLSQL--SIYREENVaREIEEEKLCQQYQKISA 160
                   567777777777.7888888888888888876..56655544045555788888887765 PP

  == domain 2  score: 144.2 bits;  conditional E-value: 7.8e-46
                   HHC-S-HHHHHHHHHHHCTTTCCSS..THHHHHHHHHHHHHHHHHHHTT-SSHHHH..HHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M3   2 lkespdrelRkeayeashskaaeqrntlensklleellklraelAkllgyesyael..aledkmaknpetvldfleelvkklrpllekelkllkelk 96 
                   ++e +dre Rk+++e    k  e+++     +++++ll+ r + A   g+e+y+++  +  ++++++pe++l++ +++++ + pl +ke++++++  
    CCG92547.1 179 YLEEQDREKRKRVWETIAHKRLEKKELF--DEIFDKLLSIRSQIAASAGFENYRDYifQKYQRFDYTPEDCLKLGKAIEEVVLPL-QKEIEEWRK-- 270
                   57889***********999988777778..9**********9999999999999863366678**********998888888886.677888888.. PP

                   HHCCT-SSS--CCCHHHHHHHHHCCCCS--CCCCGGG-BHHHHHHCHHHHHHHHHTEEEEEETTS..--SSTT-EEEEEEET.TT-EEEEEEEEEEC CS
  Peptidase_M3  97 kkelglegelqpwDvaYYsekqreekydldqeelkeyfpletvleGllelfeeLfGikfveekdakgevwhedVrkleVvdeilsegligeiylDly 193
                    + l+l+ +l+pwD+            ++d+e + +  p+ +  e l+e + ++f    +++++     w               ++l +++ +Dl+
    CCG92547.1 271 -NALNLD-QLRPWDL------------SVDPEGAPPLRPFHNGKE-LFEKVGNIF----KRIDN---RLWNF------------YKTLGEKNLIDLE 333
                   .679999.*******............799998999999999999.444444444....33333...35544............67888999***** PP

                   --TTS-SS-EEEEEE--BTTS-B--EEEEEEEEE---BTTS--B--HHHHHHHHHHHHHHHHHHC--BSSGGGSTT-S-CCCCCHHHHHHHHGGGSH CS
  Peptidase_M3 194 erkgKrggAasfglvksredgtrqlpviylllNftkpsskkPsLLtldevetLfHEfGHsmHsllsrteysnvsgtnvpidfvElpSqlmEnlltep 290
                   +rkgK+ g++ ++l            ++++++N ++         t++++etL HE GH++Hsl  r+++ +  +++ p++f E++S+ mE ++ ++
    CCG92547.1 334 NRKGKAPGGYQSTLPLA--------RLPFIFMNAVG---------THRDLETLLHESGHAFHSLACRDQFLY-DYRSAPLEFCEVASMSMELFAASY 412
                   ****************6........9**********.........*************************99.999********************* PP

                   HHHHCC-B-TTT--B--HHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHCTT-TCCGHH....HHHHHHHHHHCTTS..CTTBTTSSGGGC-CCCHT. CS
  Peptidase_M3 291 evlkslskhyetgeaipeelleklikaknvnaalellrqlvfaafdqelHeeaeeeqilkkdlletyaelrkkflg..lpvapdeasqasFghlfa. 384
                   +   +    ++++++  ++l+e++i        l++ ++++++ f+qel+ + +++     +  +++++l+++f g  ++   +ea ++    l + 
    CCG92547.1 413 LDEFYS---SSELKRANRKLFEGII--------LFFPWMATVDGFQQELYVSPDKSRE---KRGRIWEQLMDRFGGtvDWRGYEEARRY----LWQr 491
                   *99999...67899***********........**********************984...4589*******99995434433333333....2222 PP

                   ..SS-TTTTCHHHHHHHH..HHHHHHCCHHCCTT-CCHHHHHHHHTTTTTTSS-HHHHHHCCCSS---SHHH CS
  Peptidase_M3 385 ..hgYaanYYsylyaevl..aldifekffeedplnretGeryrkeiLsrGgskdplellkkflgrepsadal 452
                     h++++++Y+ +y  ++  al+++ + ++ d    ++  +++   Ls Ggs++ +el+++++     +++ 
    CCG92547.1 492 qlHIFEVPFYYVEYGIAQigALAFWLAAKK-D---LKATLDRYLYALSLGGSRPLKELFQAAGLPFDFSAPT 559
                   34999*************989999999888.6...3334599******************999876666665 PP

>> DUF5055  Domain of unknown function (DUF5055)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.066     6e+02       5      25 ..     162     182 ..     158     189 .. 0.76
   2 ?    7.6   0.1   0.00049       4.4      53      78 ..     195     220 ..     191     236 .. 0.79
   3 ?   -3.3   0.0       1.2   1.1e+04      40      57 ..     348     365 ..     345     368 .. 0.82
   4 ?   -3.0   0.0      0.97   8.7e+03       6      34 ..     385     411 ..     381     419 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.066
     DUF5055   5 lkftyedkeytleftrrtvke 25 
                 l+ +ye+keytl    r ++e
  CCG92547.1 162 LTASYEGKEYTLVQLSRYLEE 182
                 6779*******9877776665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00049
     DUF5055  53 lahhrfekkdvineiyskltkkeeli 78 
                  ah+r+ekk++ +ei+ kl      i
  CCG92547.1 195 IAHKRLEKKELFDEIFDKLLSIRSQI 220
                 69***************987655555 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.2
     DUF5055  40 pmttlpalfagaflahhr 57 
                 p++ lp +f  a  +h  
  CCG92547.1 348 PLARLPFIFMNAVGTHRD 365
                 8999*****999988875 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 0.97
     DUF5055   6 kftyedkeytleftrrtvkemekkgfvaa 34 
                 +f y+ +   lef    v+ m  + f a+
  CCG92547.1 385 QFLYDYRSAPLEFCE--VASMSMELFAAS 411
                 688888899999986..555555556665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3996.48
//
Query:       CCG92548.1  [L=804]
Description: PHP family phosphoesterase fused to glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-28   98.4   0.1    4.8e-27   94.6   0.0    2.2  2  Glycos_transf_1  Glycosyl transferases group 1
      2e-25   89.8   0.0    4.2e-25   88.7   0.0    1.6  1  Glyco_trans_1_4  Glycosyl transferases group 1
      2e-16   60.4   0.0    3.5e-16   59.7   0.0    1.4  1  Glyco_transf_4   Glycosyltransferase Family 4
    3.2e-07   30.6   0.0    7.7e-07   29.4   0.0    1.7  1  Glyco_trans_1_2  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.076   12.8   0.0       0.36   10.6   0.0    2.2  1  PHP_C            PHP-associated
      0.081   13.2   0.0       0.16   12.3   0.0    1.6  1  PHP              PHP domain
       0.15   12.1   0.0       0.34   10.9   0.0    1.6  1  Glyco_trans_4_2  Glycosyl transferase 4-like
       0.19   12.2   0.0       0.33   11.4   0.0    1.5  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.099   2.2e+02      25      53 ..     443     471 ..     434     497 .. 0.81
   2 !   94.6   0.0   2.2e-30   4.8e-27      12     162 ..     630     780 ..     622     787 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.099
                      TTTTTHHHHHHHHHCCCCCHCSCEEEEEE CS
  Glycos_transf_1  25 ekeKgvdllikafallkkqlnpnvklvia 53 
                      + + gv++ i+a+a+   q + ++klvi 
       CCG92548.1 443 DDVNGVARTIQAMAKTAFQAKAQLKLVIS 471
                      667899***********99********96 PP

  == domain 2  score: 94.6 bits;  conditional E-value: 2.2e-30
                      TTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS CS
  Glycos_transf_1  12 nekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEgf 105
                      + k+++il+vgr++keK ++ l +++++l+ +  +++ l ++G+g+ ++el+kl        +  f+g +   +l + + ++ +fv+ps+++ f
       CCG92548.1 630 KAKEPVILYVGRISKEKELAFLADVAHHLWNK-GKQFTLAFVGEGPFRQELQKL------LPHAVFTGVLTGLELSKAYASSFLFVFPSTTDTF 716
                      3699**************************98.*******************99......46777899998889******************** PP

                      -HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSH.......HHH CS
  Glycos_transf_1 106 GivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairkllede.......elr 162
                      G v+lEAma+g+p+i+s++ggp+e+v     G ++k ++ +a+aeai+ +l+++       e++
       CCG92548.1 717 GNVVLEAMASGVPAIVSDVGGPSELVGALNIGKVCKGKDLKAWAEAIEFYLDNPlswkvklEMA 780
                      *****************************************************97775444444 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.0   1.9e-28   4.2e-25       1     133 [.     633     768 ..     633     769 .. 0.89

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 1.9e-28
                      SEEEEEES---GG.GTHHHHHHHHHHHH.H.H.EEEEEES---...HHHHHHHTT-T.TEEEE---..THHHHHHHH-SEEEE--..---SHHH CS
  Glyco_trans_1_4   1 rpvilfvGrleenvkgvdllleavpllrkk.d.vrlvivGdgp.rpeeleelaagleerveftGfv..edlaellaaadvfvaPs..egfglkl 87 
                      +pvil+vGr+  ++k + +l++ +++l++k + ++l +vG+gp r+ el++l+    ++ +ftG +   +l++++a++ +fv+Ps   +fg+++
       CCG92548.1 633 EPVILYVGRI-SKEKELAFLADVAHHLWNKgKqFTLAFVGEGPfRQ-ELQKLL----PHAVFTGVLtgLELSKAYASSFLFVFPSttDTFGNVV 720
                      589*******.566**************88646**********885.999655....89*****997778***************8779***** PP

                      HHHHHTT-EEEE-TGGGTTT--T..TSSEE--TT-HHHHHHHHHHHHH CS
  Glyco_trans_1_4  88 lEamaaglpvVatdvggiaevvg..engllvppgdpealaeailrLle 133
                      lEama+g+p +++dvgg++e+vg  + g +++ +d +a+aeai+  l+
       CCG92548.1 721 LEAMASGVPAIVSDVGGPSELVGalNIGKVCKGKDLKAWAEAIEFYLD 768
                      **********************533457899999*********98776 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   1.6e-19   3.5e-16       1     169 [.     445     614 ..     445     615 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 1.6e-19
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvv.tpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrr 94 
                     v+Gv+r +  +a+   ++  +  +v +++  ++le  v ++  ++ + +p +k  ++s+++++ +   +k+e++  + + +p+++g+++l + + 
      CCG92548.1 445 VNGVARTIQAMAKTAFQAKAQLKLViSRSNLKELEIPVQNFEPIGEFEIPEYKLQKLSFPPILEIIDYIKKEDFSHLLISTPGPVGLCALLAGKL 539
                     589999999999999999999988845555555555559999999999*************************************9998888889 PP

  Glyco_transf_4  95 lgiplVltvHglye.krllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDle 169
                     l+ip++  +H+ ++ + +  +  ++ + l ++++++++ + +++++++e+ ++ +++  gvp+ek+   p+G+D++
      CCG92548.1 540 LKIPMIGIYHTDFPqYARFLSDDSWMETLTWKYMEWFYGQLNKILVNTEFYKKCWIQ-RGVPAEKLSLFPRGIDVD 614
                     **************9888899999999******************************.****************97 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   3.5e-10   7.7e-07       2      90 ..     707     796 ..     705     798 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 3.5e-10
  Glyco_trans_1_2   2 vLnpsrsespnlrlfEaaacGafaltdda...egleelftpgkevilfedleelaekiryllanpeerraiaeaarervlaehtydhraeql 90 
                      +++ps  +++  +++Ea+a+G++a+++d    ++l   +++g +v+  +dl+ +ae+i+++l+np  ++ +  +  e++++e +++ +++++
       CCG92548.1 707 FVFPSTTDTFGNVVLEAMASGVPAIVSDVggpSELVGALNIG-KVCKGKDLKAWAEAIEFYLDNPLSWK-VKLEMAEKIKQERNWNTAFQNF 796
                      5679999**********************6665555556677.777777******************98.7888889999999999999887 PP

>> PHP_C  PHP-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00016      0.36      14      53 ..     196     234 ..     194     236 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
       PHP_C  14 lglpgtgGSDAHrleeVGrayTefeepiatpdelleaire 53 
                 +++ ++gGS  H    VG+a+Te++   +++d++ +++ +
  CCG92548.1 196 HEKIFIGGSNDHGGLSVGSAWTEVQGA-ESVDTFFNSLFS 234
                 78899*******************444.557888777655 PP

>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.1e-05      0.16       1      74 [.       8     139 ..       8     336 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.1e-05
                 EEEE--CCC............--.S-H..HHHHHHHHHCT-SEEEEEEEEBTTHHHHHHHHHHHHTTTTSEEEEEEE...................... CS
                 xxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............. RF
         PHP   1 dlHvHteys............lldgalsieelvkkakelglkaiaiTDhgnlfgyvefykaakkkykagikpiiGleayvaddse.............. 73 
                 dlH+H++ys            + ++  s++el  k ++ g+    iTDh+ + g +e +++        + + +G+e++    +               
  CCG92548.1   8 DLHLHSKYSdrpsewilrrigFPQSCTSPQELHGKLQKEGMRWKTITDHNRIEGCLELMERH-------LDVFMGVELSTFFPDGceihlliwhfppsd 99 
                 7999****999999988888755678899****************************99988.......789999997665554456666666666666 PP

                 ........................................ CS
                 .......................................x RF
         PHP  74 .......................................k 74 
                                                         
  CCG92548.1 100 fkifkelasnvyelssyllkrniphavahplksvngkltV 139
                 6666666666666666666666666655555555555554 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015      0.34      51     113 ..     492     554 ..     453     584 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
  Glyco_trans_4_2  51 kvd.rkg.pleylkafklkklikkikPDvvhahyakpygllgslaarlsgvipvvlsvwGldvlk 113
                      +++  k  +l++  ++++++ ikk+ +  + + ++ p+gl + la +l++ ip++   + +d+ +
       CCG92548.1 492 EIPeYKLqKLSFPPILEIIDYIKKEDFSHLLISTPGPVGLCALLAGKLLK-IPMIGIYH-TDFPQ 554
                      3332333344444468*********************************9.**996666.67633 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015      0.33      70     160 .]     514     610 ..     446     610 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
  Glyco_trans_4_4  70 rrerpdvvhahsp.taglaarlarrrrgiplvvtlhglllrrg.....sgavrrlyralerrllrradavlvvseaeaeelralgvpadrvvvv 157
                      ++e +  + + +p + gl a+la    +ip +  +h++ +++       ++   l +    + + +   +lv++e+  +  +++gvpa+++ ++
       CCG92548.1 514 KKEDFSHLLISTPgPVGLCALLAGKLLKIPMIGIYHTDFPQYArflsdDSWMETLTWKYMEWFYGQLNKILVNTEFYKKCWIQRGVPAEKLSLF 607
                      555566556666525899999999899*********9755544654446666667777799******************************999 PP

  Glyco_trans_4_4 158 png 160
                      p g
       CCG92548.1 608 PRG 610
                      976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.57
# Mc/sec: 4280.96
//
Query:       CCG92549.1  [L=249]
Description: Predicted deacetylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-19   70.6   0.0      2e-19   70.1   0.0    1.3  1  DUF2334   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2334  Uncharacterized protein conserved in bacteria (DUF2334)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   1.1e-23     2e-19       3     146 ..       7     159 ..       5     233 .. 0.83

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 1.1e-23
     DUF2334   3 lirleDvspgedleklkeiadyldkegi.pfsvavIPrykdpktgskvnlsenpefvevLkylqakGgeialHGYtHqygtvk.........sevsgeg 91 
                 ++ l+Dv p ++ +k+++  + l + gi ++ ++++P y+++     +++ e+p f++++    + G+e ++HG+ H                 ++ ++
  CCG92549.1   7 FVTLHDVYP-MNRKKIEKQREALAAWGIeKVGLLIVPFYHHK-----KSIVEDPSFCSWISTCASLGDETIVHGFYHDRMGRTdkfselfwtRIYTQQE 99 
                 689******.********************************.....89****************************9986667788888885556666 PP

     DUF2334  92 fef..lseseakeriekGieilkklgikpkgFeaPhyaaseetykalkky...fsiiyer 146
                  ef   +++ a  r+e++++++ +lg+ ++gF+aP + +++  +k l +    ++++++r
  CCG92549.1 100 AEFlgIEKKVAFRRLEEAKKMFMSLGWSTRGFIAPGWLFDSPLLKWLPEVgyaYTVAIDR 159
                 6668899**************************************999543145555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1707.05
//
Query:       CCG92550.1  [L=241]
Description: Acetyltransferase, GNAT family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.22   10.1   0.0       0.26    9.9   0.0    1.1  1  AAA_13    AAA domain


Domain annotation for each model (and alignments):
>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   1.5e-05      0.26     634     678 ..     156     199 ..     110     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 1.5e-05
      AAA_13 634 sayllpNvlRrlLEtffkfpgsirkdkelleefegedkalkksll 678
                 +++  pN+ Rrl+++f++++ s ++  +++ +     + +k +l+
  CCG92550.1 156 ESVKSPNTTRRLIDSFLAYLVSKGH-RKVYGQIVVFGDRRKPALF 199
                 67788**************998875.5566665555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1764.80
//
Query:       CCG92551.1  [L=410]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-22   80.5   0.0    2.7e-22   79.1   0.0    1.7  2  Glycos_transf_1  Glycosyl transferases group 1
    2.7e-18   66.7   0.0    9.3e-18   64.9   0.0    1.8  2  Glyco_trans_1_4  Glycosyl transferases group 1
    2.2e-15   57.1   0.0    3.4e-15   56.4   0.0    1.3  1  Glyco_transf_4   Glycosyltransferase Family 4
    1.7e-06   28.6   0.0    3.6e-06   27.5   0.0    1.6  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
     0.0038   17.3   0.0      0.007   16.4   0.0    1.4  1  Glyco_trans_4_2  Glycosyl transferase 4-like
  ------ inclusion threshold ------
       0.15   11.8   0.0       0.29   10.8   0.0    1.5  1  MAF_flag10       Protein of unknown function DUF115


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.7     5e+03      84     102 ..     147     165 ..     139     176 .. 0.72
   2 !   79.1   0.0   8.9e-26   2.7e-22       3     155 ..     197     347 ..     195     366 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.7
                      SSHHHHHHCESEEEEEESS CS
  Glycos_transf_1  84 edleellknadifvlpsis 102
                      + + el+++ +++++ps++
       CCG92551.1 147 SYILELFSKFKLTIVPSYK 165
                      6677888888888888875 PP

  == domain 2  score: 79.1 bits;  conditional E-value: 8.9e-26
                      HHHHHHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCC.HCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCH.SSSHHHHHHCES CS
  Glycos_transf_1   3 ekkrkklgknekkkiilsvgrlekeKgvdllikafallkkq.lnpnvklviaGngeeekelkklaeelelsdnviflgevs.redleellknad 94 
                      e +r+ lg++++  ++l+vgrl+keK++ ll++ f+ l ++   +n++l+i+G+g+   +l  +++ ++   +++++ +++ + dl   ++ ad
       CCG92551.1 197 ESWREHLGIPSDAFLLLYVGRLSKEKNLVLLLETFRCLLEEkAGSNYWLLIVGDGPL-RSLVLEVKRRNQ--RITWIPYIDsKYDLCRSYRCAD 287
                      6789999*****************************7766659**********8776.566666666665..8********9999999****** PP

                      EEEEEESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHH CS
  Glycos_transf_1  95 ifvlpsisEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairkl 155
                      +fv+p i E fG+v +E+ ++g+pvi  +   + e+++ g   ++ k+n ++a+a+ai+ +
       CCG92551.1 288 LFVHPGIVETFGLVTIESQSCGCPVIGIQGTNMEEQIEGGLE-YWPKKNCPKAFAAAIKAF 347
                      *************************************99996.666666699999999876 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.6   4.8e+03      13      29 ..      74      91 ..      66     124 .. 0.75
   2 !   64.9   0.0   3.1e-21   9.3e-18       3     129 ..     211     345 ..     209     348 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.6
                     G.GTHHHHHHHH.HHHH. CS
  Glyco_trans_1_4 13 nvkgvdllleav.pllrk 29
                     n +++ llle++ p + +
       CCG92551.1 74 NLQALSLLLEQIkPDIIE 91
                     778888899998888874 PP

  == domain 2  score: 64.9 bits;  conditional E-value: 3.1e-21
                      EEEEES---GG.GTHHHHHHHHHHHH.HH....EEEEEES---...HHHHHHHTT-T.TEEEE---...THHHHHHHH-SEEEE--..---SHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkkd....vrlvivGdgp.rpeeleelaagleerveftGfv...edlaellaaadvfvaPs..egfglk 86 
                       +l+vGrl  ++k++ llle +  l++++    + l+ivGdgp r+  le  +++ ++r+++  ++    dl + ++ ad+fv P   e+fgl+
       CCG92551.1 211 LLLYVGRL-SKEKNLVLLLETFRCLLEEKagsnYWLLIVGDGPlRSLVLE--VKRRNQRITWIPYIdskYDLCRSYRCADLFVHPGivETFGLV 301
                      69******.566**********6666552245699********7663443..4322478*******765569999******************* PP

                      HHHHHHTT-EEEE-TGGGTTT--.TTSSEE-.-TT-.HHHHHHHHH CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvggiaevv.gengllv.ppgd.pealaeail 129
                      ++E+ ++g+pv+  +   ++e + g  gl   p+++ p+a+a+ai 
       CCG92551.1 302 TIESQSCGCPVIGIQGTNMEEQIeG--GLEYwPKKNcPKAFAAAIK 345
                      **************99889996653..3433266667*******97 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   1.1e-18   3.4e-15       2     169 ..      15     188 ..      14     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 1.1e-18
  Glyco_transf_4   2 GGverhvleLaraLarrG.heVtvvtpgddgpleeevelvvrvprvp.lpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrr 94 
                     GGv r++ e   + +r G  e  +++pg ++ ++ e+ lv+ ++ +  ++ +  ++r + +l++l  ll++ kpD++ + +p+ l + +l+ ++r
      CCG92551.1  15 GGVKRYLSEKQDYIRRFGkDEHFLIVPGEKDSHYSEQ-LVHIITIKSpRLDKTSRYRAMLNLQALSLLLEQIKPDIIEVGDPYQLAWFVLRKAKR 108
                     9999999999999999883456666***********5.55555544404555566777889999999************************999* PP

  Glyco_transf_4  95 lgiplVltvHglye........krllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDle 169
                     l+ip++  +H++++        ++  +   ++++ + + +   l+++ + +i++S ++   lr+ +g+++   + +p GvD++
      CCG92551.1 109 LKIPVIGFYHSHFPeaylrtfsRYGGRLLEQMFRSFSKSYILELFSKFKLTIVPSYKLCGLLRS-WGLAN--SVPLPLGVDTD 188
                     **************888866544444444455555666666666********************.**987..899******98 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.2e-09   3.6e-06      22     149 ..      36     175 ..      15     184 .. 0.62
   2 ?   -2.0   0.0       1.4   4.2e+03      17      42 ..     183     207 ..     181     270 .. 0.57

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.2e-09
  Glyco_trans_4_4  22 tvltpapapgapeleedgvrvhrlpvprrpspladlaal...ralrrllrqrrerpdvvhahspt..aglaarlarrrrgiplvvtlhglllrr 110
                      + l+ ++ +++ ++ e  v+++ ++ pr  + + +++a+   +al  ll  ++ +pd++++ +p+  a+++ r a+ r +ip++  +h++ ++ 
       CCG92551.1  36 HFLIVPG-EKDSHYSEQLVHIITIKSPRLDK-TSRYRAMlnlQALSLLL--EQIKPDIIEVGDPYqlAWFVLRKAK-RLKIPVIGFYHSHFPEA 124
                      5555433.444458999**********9974.44555550115555556..************6557999999999.99*********765443 PP

  Glyco_trans_4_4 111 g........sgavrrlyraler....rllrradavlvvseaeaeelralgv 149
                      +        ++ + +++r + +     l++ + + +v+s  +  +lr +g+
       CCG92551.1 125 YlrtfsrygGRLLEQMFRSFSKsyilELFSKFKLTIVPSYKLCGLLRSWGL 175
                      321110001444444444442255556666677777777777777776666 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
  Glyco_trans_4_4  17 rGheVtvltpapapgapeleedgvrv 42 
                      +G++ ++++p+p  +++ +e+ g++ 
       CCG92551.1 183 LGVDTDIFCPGPKDESW-REHLGIPS 207
                      58888889988888877.66666653 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.3e-06     0.007      33     112 ..      42     124 ..      36     150 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.3e-06
  Glyco_trans_4_2  33 kkgakdeleaegihvhrlkvdrkg....pleylkafklkklikkikPDvvhahyakpygllgslaarlsgvipvvlsvwGldv..l 112
                      +++ ++++ ++ +h++ +k++r +        l++++l  l+++ikPD++ +  + +++++    a++++ ipv+   + +++   
       CCG92551.1  42 GEKDSHYS-EQLVHIITIKSPRLDktsrYRAMLNLQALSLLLEQIKPDIIEVGDPYQLAWFVLRKAKRLK-IPVIGFYH-SHFpeA 124
                      44434555.66799****9996553111222334679999**************9988666666678887.9**97777.665443 PP

>> MAF_flag10  Protein of unknown function DUF115
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.8e-05      0.29      63     104 ..      80     120 ..      76     158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.8e-05
  MAF_flag10  63 LlkegIkPDivvslDpqeasyevfkeaekkgdiplvfasgvn 104
                 Ll e+IkPDi+   Dp ++ + v+ +a++  +ip++ +++++
  CCG92551.1  80 LLLEQIKPDIIEVGDPYQLAWFVLRKAKRL-KIPVIGFYHSH 120
                 67789************************9.99999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2719.49
//
Query:       CCG92552.1  [L=40]
Description: hypothetical protein MFUM_700103 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       166  (0.00925874); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 276.20
//
Query:       CCG92553.1  [L=40]
Description: hypothetical protein MFUM_700104 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        84  (0.00468515); expected 358.6 (0.02)
Passed bias filter:                       80  (0.00446204); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 299.76
//
Query:       CCG92554.1  [L=159]
Description: putative Cytochrome c, class I [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0032   17.8   0.2     0.0071   16.6   0.2    1.6  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
     0.0042   18.2   0.3      0.007   17.5   0.3    1.6  1  Cytochrom_C      Cytochrome c


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   7.9e-07    0.0071       5      28 ..      29      57 ..      26      96 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.9e-07
  Cytochrome_CBB3  5 aGaalykknCasCHgkggag.....psla 28
                     + +aly  +Ca+CHg +g g     p++a
       CCG92554.1 29 QEQALYFLHCAGCHGLKGEGiagvaPQIA 57
                     6689***********55555433444444 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.3   7.8e-07     0.007       6      33 ..      32      58 ..      30     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.8e-07
                 HHHHTTGGGTB-SSSBSSS....--HHH CS
  Cytochrom_C  6 elftanCaaCHgvegggakqgggptlsg 33
                 +l+  +Ca+CHg++g+g ++  +p++++
   CCG92554.1 32 ALYFLHCAGCHGLKGEGIAGV-APQIAQ 58
                 67777************9866.666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1130.43
//
Query:       CCG92555.1  [L=180]
Description: Methylamine dehydrogenase small subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-46  157.1  16.4    2.7e-46  156.8  16.4    1.1  1  Me-amine-dh_L  Methylamine dehydrogenase, L chain


Domain annotation for each model (and alignments):
>> Me-amine-dh_L  Methylamine dehydrogenase, L chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.8  16.4   1.5e-50   2.7e-46       3     112 ..      63     172 ..      61     173 .. 0.95

  Alignments for each domain:
  == domain 1  score: 156.8 bits;  conditional E-value: 1.5e-50
                    S-TTSTTBGGGTT-EEEBGGGGT-BTTBB-TTSEEESEEEEEEEEETTTSEEEEEEEEEEESS----SSEEE-.-TT---TTSGGG--SB---TT- CS
  Me-amine-dh_L   3 kdetecdywrycaidGalcaccGGsvtscppGteaskvswvgtcanpadgkdyliayrdccGksscgrclcer.serekpvyrpelendiiwclga 97 
                    ++e++c ywryc+idG+lc+ccGG+vt+cppGt +s++ wvg+c+np dgk+yli+yrdccGk +cgrc c++ +e+e+pvy+++ +nd iwc+ga
     CCG92555.1  63 NNESSCAYWRYCSIDGFLCSCCGGGVTACPPGTFPSPTHWVGSCRNPLDGKQYLISYRDCCGKGACGRCYCQQtNETEMPVYQINRNNDTIWCFGA 158
                    67899******************************************************************8626789****************99 PP

                    GG--SEEEEE--EEE CS
  Me-amine-dh_L  98 eeskayhcsvavivG 112
                      +++yhc+ a i+G
     CCG92555.1 159 -PNMMYHCTGASILG 172
                    .89**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1302.84
//
Query:       CCG92556.1  [L=218]
Description: Methylamine utilization protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-07   31.8   0.0      3e-07   30.9   0.0    1.4  1  Thioredoxin_2  Thioredoxin-like domain
    1.9e-06   28.1   0.0    2.9e-06   27.5   0.0    1.3  1  Thioredoxin_8  Thioredoxin-like
    4.8e-05   23.3   0.0    7.5e-05   22.7   0.0    1.2  1  AhpC-TSA       AhpC/TSA family
    0.00032   20.4   0.0    0.00044   20.0   0.0    1.2  1  Redoxin        Redoxin
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.025   14.6   0.0    1.7  2  Thioredoxin    Thioredoxin
      0.016   14.9   0.6      0.027   14.1   0.6    1.3  1  zf-P11         P-11 zinc finger
      0.043   13.6   0.0      0.063   13.1   0.0    1.4  1  TraF           F plasmid transfer operon protein
       0.14   12.0   0.0       0.37   10.6   0.0    1.6  2  Thioredoxin_9  Thioredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.3e-10     3e-07       5     108 ..      79     181 ..      75     182 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.3e-10
  Thioredoxin_2   5 gkpvlvvftdpdCpyCkklkkelkel....ddvtvrvllfp.....lkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgk. 90 
                    +k  l++f +p+Cp Ckkl   + +l    +++ ++   f+     l ++ +++ ++   ++ +      +  ++el+ ++gv+++P+ ++ld++ 
     CCG92556.1  79 KKNSLLLFVSPSCPICKKLLPGVASLsrslNNLDII---FAsdgenLAAH-QQYRASTFLSPFP------YVLSRELGVAFGVSALPYAIYLDAEg 164
                    7899*****************999998665555555...44447544444.3333333334443......7999*********************6 PP

  Thioredoxin_2  91 eivarlpGyvpa.eeleal 108
                    ++  + +G+v+  e+le l
     CCG92556.1 165 KV--MAKGLVNNlEQLEGL 181
                    55..899***776888766 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.3e-09   2.9e-06       5      95 .]      83     166 ..      79     166 .. 0.96

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.3e-09
                    EEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT-HHHHTT-S--TT-SEEEEE-TT-BE CS
  Thioredoxin_8   5 lLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsvpfddkkrnklkkkynvkaiPtlvvldkngev 95 
                    lL f +  cp ck+ +p +  l+++l+   ++ i++ s  +++ + ++y++++   +ls pf+   + +l   ++v+a+P  + ld +g+v
     CCG92556.1  83 LLLFVSPSCPICKKLLPGVASLSRSLN---NLDIIFASDGENLAAHQQYRAST---FLS-PFPYVLSRELGVAFGVSALPYAIYLDAEGKV 166
                    899***********************8...********************999...998.**************************99997 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.3e-08   7.5e-05       1     122 [.      51     167 ..      51     170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.3e-08
                 TTSB----EEESTTCEE..EEC.HHH.TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEES.SSCHHHHHHHHH-H..SSEEEE-TTSH CS
    AhpC-TSA   1 vgdkapdfelknadget..vsl.sdy.kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsv.dspeshkkfiekes.lnfpllsDeegk 93 
                 vg+k p felk+ d++   v+   +   +k  +l+f++  +cp C++ lp  a l   +   ++++i  s+ +++++h+++ +     +fp+++   ++
  CCG92556.1  51 VGEKSPLFELKDLDQNRppVRIgGEHpLKKNSLLLFVSP-SCPICKKLLPGVASLSRSLN--NLDIIFASDgENLAAHQQYRASTFlSPFPYVLS--RE 144
                 799********7776443488854446666777777777.7******************9..9999****9788889999888888767888875..77 PP

                 HHHHTT-EETTTTECSCEEEEE-TTSBEE CS
    AhpC-TSA  94 vakaygvlkeekglalratfvidkegkir 122
                 +  a+gv       al+ ++ +d+egk+ 
  CCG92556.1 145 LGVAFGVS------ALPYAIYLDAEGKVM 167
                 77788888......888888888888875 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     2e-07   0.00044       1     135 [.      50     174 ..      50     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2e-07
                 -TTSBB---ECCEETTCEEEEEHHH...HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHH...HHHHHHHTT-TSEEEE-T CS
     Redoxin   1 kagdkaPdftlplaatdgnsvslse...fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndaf...vkefwgkeglkfpvlsDg 93 
                 k+g+k P f+l++++++  +v +     +k++++++++ p+  cP C++ +p ++ l++     ++  ++  +d +++   ++  ++    +fp+++++
  CCG92556.1  50 KVGEKSPLFELKDLDQNRPPVRIGGehpLKKNSLLLFVSPS--CPICKKLLPGVASLSRS---LNNLDIIFASDGENLaahQQYRASTFLSPFPYVLSR 143
                 689999************9**99988778888888888888..********999999877...3444456666666665664444445666******99 PP

                 TSHHHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSS CS
     Redoxin  94 saaftkalGlrleedaseglrtpryavidedgkvvylevepe 135
                   ++  a+G+          ++p  + +d++gkv +++++++
  CCG92556.1 144 --ELGVAFGVS---------ALPYAIYLDAEGKVMAKGLVNN 174
                 ..899999988.........**************99998876 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.1e-05     0.025      18      54 ..      79     116 ..      75     133 .. 0.87
   2 ?   -2.9   0.0         3   6.7e+03      64      83 ..     145     165 ..     142     181 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
                  SSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT.TSEEE CS
  Thioredoxin  18 kklvlveFyApwCghCkalaPeleklaeelkd.kvkla 54 
                  kk+ l+ F +p C+ Ck+l P +++l++ l++ ++ +a
   CCG92556.1  79 KKNSLLLFVSPSCPICKKLLPGVASLSRSLNNlDIIFA 116
                  5778999**********************998777765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3
                  HHHHTT-SSSS.EEEEEETTE CS
  Thioredoxin  64 lakkyevegiP.tlklfkngk 83 
                  l   ++v+++P +++l  +gk
   CCG92556.1 145 LGVAFGVSALPyAIYLDAEGK 165
                  566788888883345555555 PP

>> zf-P11  P-11 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.6   1.2e-05     0.027      28      46 ..      81      99 ..      75     102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
                HHHHHHHSSBETTTSSB-- CS
      zf-P11 28 lqllLsvserCpiCkkPLP 46
                  llL vs  CpiCkk LP
  CCG92556.1 81 NSLLLFVSPSCPICKKLLP 99
                579*************999 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.8e-05     0.063     130     158 ..      80     108 ..      76     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.8e-05
        TraF 130 eygLlfFyrgkcpyceaqapilqafadky 158
                 +  Ll+F++++cp+c++++p + ++ ++ 
  CCG92556.1  80 KNSLLLFVSPSCPICKKLLPGVASLSRSL 108
                 6689*****************99998765 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00016      0.37      44      92 ..      82     130 ..      76     144 .. 0.91
   2 ?   -2.3   0.0       1.6   3.5e+03      96     111 ..     152     167 ..     148     169 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
                    EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT CS
  Thioredoxin_9  44 kilvltedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqylt 92 
                    ++l +  + C+ +   +P +a +++  +n+++ + +  enl  ++qy++
     CCG92556.1  82 SLLLFVSPSCPICKKLLPGVASLSRSLNNLDIIFASDGENLAAHQQYRA 130
                    6789999*****************9999*******************87 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
                    --SSEEEEE-TT--EE CS
  Thioredoxin_9  96 raiPtliildeegeel 111
                     a P  i ld+eg+++
     CCG92556.1 152 SALPYAIYLDAEGKVM 167
                    6889*******99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1620.20
//
Query:       CCG92557.1  [L=180]
Description: putative Methylamine utilisation protein MauE [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-22   79.2   0.7    3.5e-22   79.0   0.7    1.0  1  MauE            Methylamine utilisation protein MauE
     0.0019   18.3   1.5     0.0025   17.9   0.0    1.8  2  DoxX_2          DoxX-like family
  ------ inclusion threshold ------
      0.068   13.2   0.6        0.1   12.6   0.6    1.3  1  SK_channel      Calcium-activated SK potassium channel
        5.3    5.3   4.5        1.3    7.3   1.3    1.5  2  Phlebovirus_G1  Phlebovirus glycoprotein G1


Domain annotation for each model (and alignments):
>> MauE  Methylamine utilisation protein MauE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.7   7.9e-26   3.5e-22       5     141 ..       2     136 ..       1     165 [. 0.83

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 7.9e-26
        MauE   5 aePvvavlvrlflalllaaaaipklrhveefyGvvrnfrllPellarpvalvlPlvelavavglvvppaaelaavvaagllvvfalalainvarGrtai 103
                 + P+    +  f+  l+  +ai k+ h   f   v  +rllP +l+ p++ ++ l e++va +++  p+ + +a+ a  ll+ f++a+ +n++rG  +i
  CCG92557.1   2 NTPIFQNTIEYFFFDLFLYSAIQKILHFSPFTRSVESYRLLPTYLVVPLSILIILSEIGVAGSFLSIPT-QASASFALILLISFSIAILVNLLRGNKKI 99 
                 67888888999999999999*****************************************88776665.45778999********************* PP

        MauE 104 dcGcfrnglkqkvswllvlrnialaavalavaavlpea 141
                 dcGcf ++ k+  sw+ ++rni l+++ + +  ++ + 
  CCG92557.1 100 DCGCFGHS-KEVSSWMILVRNIILCGILVLLYLLPSAL 136
                 *****765.55668***********9866555444443 PP

>> DoxX_2  DoxX-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.6e-07    0.0025       9      87 ..      17      97 ..      10     103 .. 0.85
   2 ?   -2.1   0.1      0.94   4.2e+03       1      17 [.     121     137 ..     121     153 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.6e-07
      DoxX_2  9 ffllsGvakllraeevvakfaqlg.fpssfvrllGvvellgalgLllplvtaprltplA.avglallmvgAiathlrrgdp 87
                +fl+s++ k+l+ + ++++++++  +p ++v  l ++ +l+ +g+   ++ +p+ + +  a++l++ +  Ai+++l+rg  
  CCG92557.1 17 LFLYSAIQKILHFSPFTRSVESYRlLPTYLVVPLSILIILSEIGVAGSFLSIPTQASASfALILLISFSIAILVNLLRGNK 97
                69*********************659*******************9997777733333236778889999******99975 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.94
      DoxX_2   1 vltvllalffllsGvak 17 
                 +l+++l+l++ll +++ 
  CCG92557.1 121 ILCGILVLLYLLPSALR 137
                 56667777666655554 PP

>> SK_channel  Calcium-activated SK potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.6   2.3e-05       0.1      41     100 ..      67     126 ..      34     133 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
  SK_channel  41 vteklsivslalkvlislsTviLLvlivlyhaaeiqlflidngaedwrvalsserilkil 100
                  + ++  +s+al +lis+s +iL+ l+     +++  f + + ++ w++++    ++ il
  CCG92557.1  67 SIPTQASASFALILLISFSIAILVNLLRGNKKIDCGCFGHSKEVSSWMILVRNIILCGIL 126
                 34556889*****************************************99876666655 PP

>> Phlebovirus_G1  Phlebovirus glycoprotein G1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.36   1.6e+03     437     463 ..      29      55 ..      16      58 .. 0.74
   2 ?    7.3   1.3   0.00029       1.3     432     470 ..     114     152 ..     106     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.36
  Phlebovirus_G1 437 llvlkrvlkllkllpkkllsPlsWlkv 463
                     ++  +r  +  +llp+ l++Pls l +
      CCG92557.1  29 FSPFTRSVESYRLLPTYLVVPLSILII 55 
                     555677788899999999999988765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00029
  Phlebovirus_G1 432 ivlllllvlkrvlkllkllpkkllsPlsWlkvfirWllr 470
                     ++l+  ++l ++l+ll llp  l  P  W  vf +W+ +
      CCG92557.1 114 MILVRNIILCGILVLLYLLPSALRFPTFWERVFSFWMGT 152
                     4555668999**************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1355.90
//
Query:       CCG92558.1  [L=331]
Description: Methylamine dehydrogenase heavy chain M [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-44  152.3   0.0    1.8e-44  152.0   0.0    1.0  1  Me-amine-dh_H  Methylamine dehydrogenase heavy chain (MADH)
  ------ inclusion threshold ------
      0.024   14.8   0.0        7.2    6.8   0.0    2.3  2  FlaG           FlaG protein
       0.13   10.7   0.0       0.78    8.2   0.0    2.3  2  Cytochrom_D1   Cytochrome D1 heme domain


Domain annotation for each model (and alignments):
>> Me-amine-dh_H  Methylamine dehydrogenase heavy chain (MADH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   0.0     3e-48   1.8e-44      16     336 ..       9     324 ..       2     330 .. 0.93

  Alignments for each domain:
  == domain 1  score: 152.0 bits;  conditional E-value: 3e-48
                    SEEEEEEETTTTEEEEEEEE-SS-EEEE-TTSS-EEEEEEEEEETTEEEEEEEEEEE-TTT--EEEEEEETTS----BS--GGGEEE-TTSSEEEE CS
  Me-amine-dh_H  16 vtqvyvidgekarvlgmidggflanvvvasdgsflakastvysriargkrtdyvevldaqtlkvladielpeaprflvgvyprmtsltpdnktllf 111
                      + ++id  k++vlgmid g++ n+v++sd +fl   +t ysr +rg rtd + v d++ l vl +ie+p   rfl  + +   +l+ dn+ ll 
     CCG92558.1   9 NRKAFLIDVPKKKVLGMIDLGYMGNIVLSSDRKFLYAVETFYSRGTRGIRTDVITVYDTKNLSVLHEIEIPPK-RFLCVIKKNTQALSGDNRFLLV 103
                    4578*******************************************************************99.********************** PP

                    EE-SSSSEEEEEETTTTEEEEEEE-SSEEEEEEEETTEEEEEETTSEEEEEE-TSSSS-EEEEEEE-..S-TTS-B-S--EEETTTTEEEEEBTTS CS
  Me-amine-dh_H 112 yqfspspavgvvdlegksfkrmldvpdcyhifpvandtffmhcrdgslakvgfgaegkskikrtevf..hkedeylinhpaysnksgrlvwptytg 205
                     ++sp+ +v vvdl+++++++ +  p    ++p     f m  +dg l+ +++++ g+ + k+ ++f   +  + ++ h +y + + +  + +y+g
     CCG92558.1 104 CNISPASSVSVVDLHQQRLVKEIPTPGYVLLYPYETRRFAMIGQDGGLLLLSLNKAGQVEEKK-RIFpgFSLADPIFEHGVYLKSANQYYFVSYEG 198
                    **********************************************************99665.67722456899********************* PP

                    EEEEEE-TTSS-EE---EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT--EEEEEEEEEEESEEEE-SSSS CS
  Me-amine-dh_H 206 kifqidlsskdakflkavealteaekkegwrpggwqqvayhrardriylladqrakwkhktasrfvfvvdaktgkrlakielgheidsisvsqdak 301
                     ++ + ls   a + +  +         gwrp gwq ++   ++ + y+l  +  k khk +   v  +    g   +ki l+  +dsi +   ++
     CCG92558.1 199 MLWSLSLSGLSATWEQKWN----IASGSGWRPCGWQLLSCDPEERHFYILMHKAPKGKHKDSGTEVWEIGRDDGVVKRKIALDRPVDSIRIVAKEE 290
                    ********99998766655....56678******************************************************************** PP

                    -EEEEEETTTTEEEEEETTT--EEEEE---SSS-- CS
  Me-amine-dh_H 302 pqlyalstedktlyifdaetgkevssvnelgrgpq 336
                      l  l  ++  l i+d   g ++++++elg+   
     CCG92558.1 291 TLLCGLCRKA-YLDIYDLRNGTKTAEIEELGEEAL 324
                    ***9998765.699*****************8765 PP

>> FlaG  FlaG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0012       7.2      62      91 ..      59      90 ..      54      96 .. 0.82
   2 ?    5.4   0.0    0.0033        20      64      81 ..     111     128 ..     107     135 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0012
                EEEEEEEETTT-SEEEE..E-HHHHHHHHHHH CS
        FlaG 62 rvvVkviDketgevIrq..iPseevldlakkl 91
                  v++v+D+++  v+ +  iP++++l ++kk 
  CCG92558.1 59 TDVITVYDTKNLSVLHEieIPPKRFLCVIKKN 90
                579************96337******999885 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0033
                 EEEEEETTT-SEEEEE-H CS
        FlaG  64 vVkviDketgevIrqiPs 81 
                  V+v+D   ++++++iP+
  CCG92558.1 111 SVSVVDLHQQRLVKEIPT 128
                 79***************7 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00013      0.78      78     117 ..      88     128 ..       2     145 .. 0.51
   2 ?   -1.6   0.0      0.12   7.2e+02      45      74 ..     288     317 ..     280     326 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00013
                   EEEEEEE--TTSEEEEEEEETT.EEEEEETTT--EEEEEE- CS
  Cytochrom_D1  78 narsvavSqddryvivgnYlPg.qlvildaetLelvkvisa 117
                        a S d+r+++v n  P   ++++d ++  lvk+i++
    CCG92558.1  88 KKNTQALSGDNRFLLVCNISPAsSVSVVDLHQQRLVKEIPT 128
                   22333445555555555555541345555555555555555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.12
                   T.SSEEEEEETTSEEEEEESSSSSEEEEEE CS
  Cytochrom_D1  45 sdgRyvyvigRDgkvtliDLwakeivaevk 74 
                   +++ ++  + R + ++++DL + ++ ae++
    CCG92558.1 288 KEETLLCGLCRKAYLDIYDLRNGTKTAEIE 317
                   55556666789999******9999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2258.89
//
Query:       CCG92559.1  [L=197]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1277.37
//
Query:       CCG92560.1  [L=127]
Description: Uncharacterized enzyme of heme biosynthesis (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.027   14.9   0.5      0.035   14.6   0.5    1.1  1  DUF3209       Protein of unknown function (DUF3209)
      0.028   13.7   0.5      0.035   13.4   0.5    1.1  1  CorA          CorA-like Mg2+ transporter protein
      0.044   13.8   7.9       0.36   10.9   7.9    2.2  1  DUF465        Protein of unknown function (DUF465)
      0.047   13.2   4.7      0.057   12.9   4.7    1.0  1  Topoisom_I_N  Eukaryotic DNA topoisomerase I, DNA binding fra
      0.066   12.5   0.3      0.074   12.4   0.3    1.1  1  DUF3810       Protein of unknown function (DUF3810)
      0.075   13.0  11.2       0.12   12.4  11.0    1.4  1  FlxA          FlxA-like protein
       0.12   12.6   9.3       0.18   12.1   9.3    1.2  1  DUF4164       Domain of unknown function (DUF4164)
       0.14   11.9   4.3       0.16   11.7   4.3    1.0  1  DUF4640       Domain of unknown function (DUF4640)
        0.2   10.5   4.1       0.21   10.4   4.1    1.0  1  PA26          PA26 p53-induced protein (sestrin)
       0.25   10.7   6.0       0.34   10.2   6.0    1.2  1  DUF4407       Domain of unknown function (DUF4407)
       0.27   11.3  11.6       0.34   10.9  11.6    1.1  1  DUF5384       Family of unknown function (DUF5384)
       0.44   10.9   7.2       0.96    9.8   7.0    1.7  2  DUF1840       Domain of unknown function (DUF1840)
        2.9    7.0   4.9        3.8    6.7   4.9    1.2  1  TMPIT         TMPIT-like protein
        6.8    5.6   9.1        7.9    5.4   9.1    1.2  1  DUF3987       Protein of unknown function (DUF3987)
        6.8    7.2   8.4        3.4    8.1   5.0    1.9  2  DUF4140       N-terminal domain of unknown function (DUF4140)


Domain annotation for each model (and alignments):
>> DUF3209  Protein of unknown function (DUF3209)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.5   2.9e-05     0.035      15     113 ..      17     111 ..      10     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.9e-05
                 HHTT.--GGGCHHHHHHHTTTTTT-HHHHHHHH--SHHHHHHHHHHHHHHHHHHHHH....STT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     DUF3209  15 nvlgvkdeaerrHaeaEleaeleepgpikalaeAkdlaelerhldaalvdLeeevaktdeddpeldYlRgrlvavrdaeralkrlveeleallddleel 113
                  + g + e++ + a++ +e++ ++p   ++    ++ ++    ldaa+ +Le++++k + +  ++d  R   +  + ae + +  +++++all+d+++ 
  CCG92560.1  17 SLGGCTGEQQASFAKNKIEEYKQNPT-KENR---EEAQAALSELDAAIHKLEAQISKEEGETKKEDQRRLNDLKKKRAELSSDFTKAKADALLKDIKDF 111
                 55666777777778888877777333.3333...3344556679*************9999999999999999999*******************9886 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.5   2.9e-05     0.035     122     174 ..      48     104 ..      43     123 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.9e-05
        CorA 122 rlfellekleeeldeledel...edstkkeilrelaqlrrrlvkl.rralapnrevl 174
                 +  ++l++l++ +++le ++   e +tkke+ r+l +l+++ ++l  +  +++ ++l
  CCG92560.1  48 EAQAALSELDAAIHKLEAQIskeEGETKKEDQRRLNDLKKKRAELsSDFTKAKADAL 104
                 56789**********************************987777466666666665 PP

>> DUF465  Protein of unknown function (DUF465)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   7.9    0.0003      0.36       9      39 ..      61      92 ..      54     110 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0003
                HHHHHHHHHHHTT-..S-HHHHHHHHHHHHHH CS
      DUF465  9 eeLdkeIhalearpv.tddleierLKkeKLeL 39
                + L+++I ++e      d+ ++ +LKk++ eL
  CCG92560.1 61 HKLEAQISKEEGETKkEDQRRLNDLKKKRAEL 92
                456666666666666**************998 PP

>> Topoisom_I_N  Eukaryotic DNA topoisomerase I, DNA binding fragment
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   4.7   4.7e-05     0.057      55     143 ..      24     117 ..      15     125 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.7e-05
                   GG-HHHHHHHHHHHHHHHHHTT-...---GGGEE..-HHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHEEEETTEEEEEE--B----E CS
  Topoisom_I_N  55 akkevFqknffkdfkkvlkekek...ikelekcd..FskikeylekekekkkaltkeekkklkeekekleekygyalldgrkekvgnfrvepPg 143
                   ++++ F kn ++++k++ +++++    + l+++d   +k+++ ++ke+ + k+ ++ + + lk+++++l+++++ a  d   +++ +f  +pP 
    CCG92560.1  24 EQQASFAKNKIEEYKQNPTKENReeaQAALSELDaaIHKLEAQISKEEGETKKEDQRRLNDLKKKRAELSSDFTKAKADALLKDIKDFFQNPPF 117
                   57889**********99844443234566777772234555555555555555666666778**************************999995 PP

>> DUF3810  Protein of unknown function (DUF3810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   6.2e-05     0.074      87     155 ..      34     101 ..       3     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.2e-05
     DUF3810  87 lserlglkkeeyseeelaelaeklveklnelreqverdeeevrkeakkaykklgeeypllsgfypkpKp 155
                 + e+++ ++++++ ee ++ +++l + +++l++q++++e+e++ke ++ ++ l+++   ls+ + k+K+
  CCG92560.1  34 I-EEYKQNPTKENREEAQAALSELDAAIHKLEAQISKEEGETKKEDQRRLNDLKKKRAELSSDFTKAKA 101
                 3.446677999999*************************99*******************999999996 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4  11.0    0.0001      0.12      24      96 ..      25      98 ..      24     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
        FlxA 24 kQiknlqkqLkelses.deltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsekeekskskqegvn 96
                +Q + ++++++e +++ +++  ee ++   ++ a I +l+aQI + + + +++ q+  +  k+++++ +++ ++
  CCG92560.1 25 QQASFAKNKIEEYKQNpTKENREEAQAALSELDAAIHKLEAQISKEEGETKKEDQRRLNDLKKKRAELSSDFTK 98
                799999**********999999999999********************99999998877777777665555544 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   9.3   0.00015      0.18       3      60 ..      46     101 ..      44     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
     DUF4164   3 tkeleaaltrLeaaldsLEkavdrrleaerkrdeleaeiealgedrsRLaeeLdqaea 60 
                 ++e +aal++L+aa+ +LE+ + +   + +  +e +++++ l++ r+ L  ++++a+a
  CCG92560.1  46 REEAQAALSELDAAIHKLEAQISKEEGETK--KEDQRRLNDLKKKRAELSSDFTKAKA 101
                 57899*****************98655555..555789****************9987 PP

>> DUF4640  Domain of unknown function (DUF4640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.3   0.00014      0.16      89     179 ..      27     119 ..      21     126 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
     DUF4640  89 dsianwdlkkenqWidkypeektkltlskLdglvqkLekflenekdd.edddsvlpesaqkEdfqlssssppdtaqvshqe.edtcqdlpkvk 179
                  s a+ ++++ +q   k ++e+ + +ls+Ld+ + kLe ++ +e ++ +++d+  ++ ++k   +lss      a +  ++ +d  q+ p ++
  CCG92560.1  27 ASFAKNKIEEYKQNPTKENREEAQAALSELDAAIHKLEAQISKEEGEtKKEDQRRLNDLKKKRAELSSDFTKAKADALLKDiKDFFQNPPFFN 119
                 57777788888888889999********************99998762456666677778889999998888777765544245556666555 PP

>> PA26  PA26 p53-induced protein (sestrin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.1   0.00018      0.21     197     283 ..      30     118 ..      17     127 .] 0.69

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
        PA26 197 kedsseeeeeelerkaaaeaeaevealmermkklqeeedeeeeaseeelserfekeeseslllaaa..daeeaavasdlsryvedpefg 283
                 ++++ ee +++ ++++ +ea+a +++l + ++kl+ +  +ee  +++e ++r++  +++ ++l +   +a+  a  +d++ ++++p f 
  CCG92560.1  30 AKNKIEEYKQNPTKENREEAQAALSELDAAIHKLEAQISKEEGETKKEDQRRLNDLKKKRAELSSDftKAKADALLKDIKDFFQNPPFF 118
                 34555666666666677777777777777777777777777777888888888777777777766633445555559*******99985 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.0   0.00028      0.34     183     238 ..      44     101 ..      20     112 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00028
     DUF4407 183 paakekkaqldaaqaelaelkakld..atarlaalraelaeleaerakeraasqaaaa 238
                 ++ +e++a+l +++a++ +l+a+++  ++++ ++++++l++l+++ra+  +++++a+a
  CCG92560.1  44 ENREEAQAALSELDAAIHKLEAQISkeEGETKKEDQRRLNDLKKKRAELSSDFTKAKA 101
                 2223355555555555555555555777777777777777777777777777776544 PP

>> DUF5384  Family of unknown function (DUF5384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  11.6   0.00029      0.34      20      90 ..      30     100 ..      21     110 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
     DUF5384  20 eeekqraeaaeaaakrkRaaaaaaaaearkekakaeaaedkk.RdqsyEDelRaLeieerkleLqakkarvk 90 
                 +++k+ +e++++  k++R +a+aa +e  ++ +k ea+  k   + + ED+ R  +++++++eL     ++k
  CCG92560.1  30 AKNKI-EEYKQNPTKENREEAQAALSELDAAIHKLEAQISKEeGETKKEDQRRLNDLKKKRAELSSDFTKAK 100
                 33333.345555566688888888777666666666666665478899****************98776665 PP

>> DUF1840  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2       1.2   1.4e+03      52      67 ..      33      48 ..      23      55 .. 0.43
   2 ?    9.8   7.0   0.00081      0.96      38      74 ..      52      88 ..      30     106 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.2
     DUF1840 52 aiaaekaeeaeeeeee 67
                +i++ k+++ +e++ee
  CCG92560.1 33 KIEEYKQNPTKENREE 48
                3333333333333222 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00081
     DUF1840 38 taedlpaaiakLeaaiaaekaeeaeeeeeeeeeekee 74
                + ++l+aai+kLea+i++e+ e ++e++++ ++ k++
  CCG92560.1 52 ALSELDAAIHKLEAQISKEEGETKKEDQRRLNDLKKK 88
                4467888888888888888888777777766554432 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.9    0.0032       3.8      21      85 ..      35      99 ..      20     114 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0032
       TMPIT 21 ykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlkev 85
                 + k + +++  ++ + ++++    +++l+++++k + ++k+e+++++++lk++ +e ++ + + 
  CCG92560.1 35 EEYKQNPTKENREEAQAALSELDAAIHKLEAQISKEEGETKKEDQRRLNDLKKKRAELSSDFTKA 99
                22233334444455555555555555555555555555555666666666666666655555533 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   9.1    0.0066       7.9      61     114 ..      32      88 ..      25     110 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0066
     DUF3987  61 eeieaelreeyeeelkeyeaekkaweaelealekkaakak...eakaeealaeleae 114
                 ++ie++ ++  +e+++e++a+ ++++a++++le+++ k++   +++++++l +l+++
  CCG92560.1  32 NKIEEYKQNPTKENREEAQAALSELDAAIHKLEAQISKEEgetKKEDQRRLNDLKKK 88 
                 58999999*******************************976655555555555543 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.0    0.0029       3.4      57      94 ..      43      80 ..      27      83 .. 0.79
   2 ?    2.2   0.9      0.21   2.5e+02      67      93 ..      75     101 ..      68     105 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0029
     DUF4140 57 vpnreaeeeelkalraeleeledelaaledelaaaear 94
                ++nre+++++l++l+a++++le+++++ e e +  ++r
  CCG92560.1 43 KENREEAQAALSELDAAIHKLEAQISKEEGETKKEDQR 80
                3455555557*****************99999888776 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.21
     DUF4140  67 lkalraeleeledelaaledelaaaea 93 
                  k+ +++l+ l++++a+l+++ + a+a
  CCG92560.1  75 KKEDQRRLNDLKKKRAELSSDFTKAKA 101
                 456677788888888888777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2797  (0.156004); expected 358.6 (0.02)
Passed bias filter:                     1017  (0.0567237); expected 358.6 (0.02)
Passed Vit filter:                       129  (0.00719505); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 886.39
//
Query:       CCG92561.1  [L=146]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00046   20.4   0.2     0.0019   18.4   0.4    1.8  2  Osmo_CC   Osmosensory transporter coiled coil
  ------ inclusion threshold ------
        1.7    9.1   7.5        3.5    8.0   3.6    2.2  2  CCDC-167  Coiled-coil domain-containing protein 167


Domain annotation for each model (and alignments):
>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.96   8.6e+03      17      31 ..      32      46 ..      31      48 .. 0.74
   2 !   18.4   0.4   2.1e-07    0.0019      10      32 ..      81     103 ..      79     108 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.96
                HHHHHHHHHHHHHHH CS
     Osmo_CC 17 IEqkvedideeIaaL 31
                +E++++   ++I  L
  CCG92561.1 32 VEHRLGSFKKQIDFL 46
                688888888888765 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2.1e-07
                 XXXXXTHHHHHHHHHHHHHHHHH CS
     Osmo_CC  10 LqehYdnIEqkvedideeIaaLe 32 
                 L+e++d IEqk+e+id  + a++
  CCG92561.1  81 LNERFDRIEQKLEQIDRKLSAIQ 103
                 89***************999887 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2    0.0063        56       9      58 ..      32      81 ..      31      83 .. 0.89
   2 ?    8.0   3.6   0.00039       3.5       8      46 ..      80     120 ..      76     138 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0063
    CCDC-167  9 leeklascrerLeaverrlrkeelseeeResleeEeaslkeqleenekeL 58
                +e +l s++++++ ++r  +++  se   ++++  ++ + e++++ +  L
  CCG92561.1 32 VEHRLGSFKKQIDFLNRTWTENLKSESSQDEIQYLMKLVLERIDQLDLHL 81
                6889999*************999999999*99999999999999988777 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00039
    CCDC-167   8 kleeklascrerLeaverrlrkeelseee..ResleeEeas 46 
                 +l+e+  +++++Le+++r+l   +l + e   + +ee  ++
  CCG92561.1  80 HLNERFDRIEQKLEQIDRKLSAIQLIQAEeeEDFFEENSNT 120
                 589999**************999875433113334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1616  (0.0901333); expected 358.6 (0.02)
Passed bias filter:                      773  (0.0431145); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 976.94
//
Query:       CCG92562.1  [L=664]
Description: Glycosidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-44  152.1   0.0    2.9e-44  151.5   0.0    1.3  1  DUF3416         Domain of unknown function (DUF3416)
    3.1e-06   27.0   0.0    2.7e-05   23.9   0.0    2.2  1  Alpha-amylase   Alpha amylase, catalytic domain
     0.0018   18.4   0.0     0.0059   16.7   0.0    1.8  2  GHL6            Hypothetical glycosyl hydrolase 6
  ------ inclusion threshold ------
      0.029   14.5   0.0      0.067   13.3   0.0    1.7  1  Malt_amylase_C  Maltogenic Amylase, C-terminal domain


Domain annotation for each model (and alignments):
>> DUF3416  Domain of unknown function (DUF3416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.5   0.0   6.5e-48   2.9e-44       1     179 []      21     204 ..      21     204 .. 0.96

  Alignments for each domain:
  == domain 1  score: 151.5 bits;  conditional E-value: 6.5e-48
     DUF3416   1 griaIedvsPevdgGrfpaKavvGetvpVeAdvfrdGhdalaAtlvlrragekewqevpMtpggndrweasftpdelGryeftveAWvDpfatWrhdle 99 
                 +ri+I+++ P+vd+G fp K++vGe+++V+A+vf+dGh++++ +  +++ +e++w+e+pM + gnd+weasf++++lG ye +v +W+D+f+ W ++l 
  CCG92562.1  21 RRIVIDHIFPRVDCGGFPLKRIVGERMTVRAHVFADGHEKISIHFAFKHINEEKWNEIPMVDCGNDEWEASFPLNKLGIYEGKVIGWIDHFQNWLEKLY 119
                 59***********************************************************999*********************************** PP

     DUF3416 100 kkveagqdveleleeGarlleraaeraea.aalraaaaalrdd...peerlaaalseevaallaryplrelatrsek.lpveVdR 179
                 k  e+++++ +el++G +lle+   + ++ ++l+ ++++l+++     +r+++a ++++++l++++p+r+l ++s + + + V+R
  CCG92562.1 120 KLPEDDKELGVELLIGVQLLEKNFLELSHnEELKWWIEELKNErlsILQRVHLAKNPALQQLVQKCPDRSLGSESTEpFLIFVER 204
                 **********************88666448**********666677889*************************999999***98 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   6.1e-09   2.7e-05      13     105 ..     240     343 ..     228     425 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 6.1e-09
                    CCCCT-SCEEE-B-CE.....................-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCC CS
  Alpha-amylase  13 lkeLGvtaiwlsPifk.....................spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkes 87 
                    + ++G+++++l Pi                       sp    g      ++++p+ Gt ed+ + ++ka + gi v lD+ +  +s +h + +e+
     CCG92562.1 240 IASMGFDVVYLPPIHPigkkarkgknnsleptpedvgSP-WAIGSEEGGHKAVHPALGTLEDFRHFVEKAAQYGIEVALDIAFQ-CSPDHPYVTEH 333
                    889***********99999************99999988.889999999*******************************9995.99***997776 PP

                    HHSTTSGGGCCC-E.... CS
  Alpha-amylase  88 lkkkgepkrdyyiwkegk 105
                     +        ++ w++  
     CCG92562.1 334 PS--------WFKWRPDG 343
                    65........33333322 PP

>> GHL6  Hypothetical glycosyl hydrolase 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-06    0.0059      40     101 ..     292     355 ..     281     378 .. 0.81
   2 ?   -2.8   0.0       1.4   6.5e+03      75      87 ..     636     648 ..     592     656 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.3e-06
        GHL6  40 hpklk..rdllkelvkachregikvvvrvdfska.deriyeqhpeWaavkenGeviiiegervge 101
                 hp l   +d+ +  v+ + + gi v   + f++  d+  + +hp W+  +++G v + e+ + ++
  CCG92562.1 292 HPALGtlEDF-RHFVEKAAQYGIEVALDIAFQCSpDHPYVTEHPSWFKWRPDGTVQYAENPPKKY 355
                 6777433466.999******************9747778899************97777666555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
        GHL6  75 iyeqhpeWaavke 87 
                  y  h +W +vk 
  CCG92562.1 636 TYTWHGDWNFVKL 648
                 4666777777765 PP

>> Malt_amylase_C  Maltogenic Amylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.5e-05     0.067       3      34 ..     572     605 ..     571     651 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
                     EEE---S-TTEEEEEEEETT..EEEEEEEE..SS-E CS
  Malt_amylase_C   3 fefleadnrkvlaYlReyed..etilvvaN..rsaq 34 
                     ++f+++dn++ laY++  +   + +l+v+N  +  +
      CCG92562.1 572 IRFVQTDNPRLLAYVKDGPAhaDPLLIVVNmsK--N 605
                     79***************9999899******642..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4689.12
//
Query:       CCG92563.1  [L=527]
Description: Uncharacterized domain involved in trehalose biosynthesis [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-05   25.7   0.0    3.3e-05   24.8   0.0    1.4  1  Mak_N_cap  Maltokinase N-terminal cap domain
    0.00017   21.6   0.0     0.0003   20.8   0.0    1.5  1  APH        Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Mak_N_cap  Maltokinase N-terminal cap domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.7e-09   3.3e-05       1      63 [.      38     103 ..      38     117 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 3.7e-09
                 CCTTSTT-STTTT-EEEEEEEEEEEC.......TEEEEEEEEEETT...EEEEEEEEECSS--CCG CS
   Mak_N_cap   1 WLprqrWfagkgrpvtglrlvsatelddpagevglehllvrveeag...dvYqvpLgyreappegl 63 
                 +Lp++rWf +k++ + +l+  +++ ld  ++e +l+++ v+ ++++   d++++pL+ ++ p++++
  CCG92563.1  38 YLPHCRWFSSKSQSIVQLEFEEEIFLDPFKQEFSLLFFRVTYDKGPeaqDLFLLPLQRKSLPEAQH 103
                 8*************************99999999999999987775688*******9987777665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   3.3e-08    0.0003     144     194 ..     347     409 ..     254     446 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.3e-08
                 HHHHHHHH...........HHHHHHHH--S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 144 lleeleeq...........vlaalaallpg....elptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 + +++ +q           + ++l++        + ++  +HgD+h+g +l++ + + +  +iDfe
  CCG92563.1 347 WFQRILSQrnftfqslterISQKLKEKITDleeeNPDKIRIHGDFHLGQVLWT-GSDYF--IIDFE 409
                 2333333344444443333333333333334444669****************.99999..****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3575.98
//
Query:       CCG92564.1  [L=330]
Description: putative NADP-dependent oxidoreductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-30  105.1   0.0    2.7e-30  104.4   0.0    1.3  1  ADH_N_2       N-terminal domain of oxidoreductase
    3.6e-22   78.7   0.0    5.1e-22   78.3   0.0    1.2  1  ADH_zinc_N    Zinc-binding dehydrogenase
    8.7e-07   30.1   0.0    1.4e-06   29.4   0.0    1.3  1  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0   4.5e-34   2.7e-30       1     107 [.       4     110 ..       4     111 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 4.5e-34
     ADH_N_2   1 kqwvlkkrpegaptesdfeleeeelpelkdGevlvralylSvDPymRgrmndaksyvepvelgdvmrggavgeVveSknpdfkvGdlVvgllgwqdyav 99 
                 kq++l k+peg ++es+f+++++++p++k+Gevlv+++y+S+DPy R  +++ ++    v+ g+ m++  vgeVveSk+p f+ G++V+g+lgwq+y +
  CCG92564.1   4 KQVILVKKPEGLINESHFSIVSTDIPTPKEGEVLVKNRYVSIDPYLRLLTEEPTTFSRGVKPGSRMESWSVGEVVESKSPVFQSGQYVLGYLGWQEYGL 102
                 799************************************************************************************************ PP

     ADH_N_2 100 sdgkglek 107
                 s++++l++
  CCG92564.1 103 SNERELRP 110
                 **999976 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0   8.5e-26   5.1e-22       2     128 ..     157     288 ..     156     290 .. 0.91

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 8.5e-26
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE... CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakk.lGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee... 96 
                 vG+ a q+Ak+  ++v+++  seek++++ + l  d +in+k+++l+e++k+   +eg+d++++ vG g+tl++al +l+++ r+v++G+ ++ ++   
  CCG92564.1 157 VGMTAGQFAKMHSCKVVGITDSEEKCRFLLEeLNFDSAINEKRENLEEKLKQYV-PEGIDLYYDNVG-GETLDTALLFLRKNSRVVICGMISQYNVktp 253
                 9*****************99999998877776*********887**********.9***********.**********************555555579 PP

                 ...EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  97 ...fdlrnlllkeksilGsllgslreefkealdll 128
                     ++ +l+  + +++G+++g+ +++++ea++ l
  CCG92564.1 254 yaiKNFERLHSARATLKGFIVGDRTDRWPEAIRRL 288
                 88777788***********************9875 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   2.3e-10   1.4e-06       2     133 .]     190     328 ..     189     328 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2.3e-10
                   T-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.......S-EEE-CHHHCTTT-EEEE--GGG...-.... CS
  ADH_zinc_N_2   2 GAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp......lsaallkpakkrkgrsvkyeflfsmkas.... 84 
                    +d +i+ ++e++e    + + +eg+D+ +d+vgge+l + +l +l+++ r+v  g+ +      ++ a+   ++           l s++a+    
    CCG92564.1 190 NFDSAINEKRENLEeklkQYV-PEGIDLYYDNVGGETL-DTALLFLRKNSRVVICGM-IsqynvkTPYAIKNFER-----------LHSARATlkgf 272
                   578999999999999995555.8**************9.9999899888**986664.32445553333333333...........33322223333 PP

                   ........-HHHHHHHHHHHHHHH----EEEE.EEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  85 .......aqadileelaalieeGklrpvvdrv.fpleeaaeAhrylesgrarGKiVl 133
                          +  +++++l  +++e+kl+ + + v  +le+a++A+  + +++ +GK V+
    CCG92564.1 273 ivgdrtdRWPEAIRRLEVWVKEKKLKHREN-VfHGLENAPKALHSIFTNAPIGKTVV 328
                   4444466455559*************9998.5489*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 2773.18
//
Query:       CCG92565.1  [L=478]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-43  149.3   0.7    1.9e-43  148.9   0.7    1.1  1  BBP2      Putative beta-barrel porin-2, OmpL-like. bbp2


Domain annotation for each model (and alignments):
>> BBP2  Putative beta-barrel porin-2, OmpL-like. bbp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.9   0.7   1.1e-47   1.9e-43       3     324 ..      71     446 ..      69     469 .. 0.88

  Alignments for each domain:
  == domain 1  score: 148.9 bits;  conditional E-value: 1.1e-47
        BBP2   3 tisGyvdvyytynfnnpqnntn.......dpggtfadrn......nefalnlaklklekeadk.....vgfridlqfGtdanytqaa.gstnsg..... 77 
                 +++Gy+d+ ytynf   ++++n       +  +               +ln+++l +ek+  +     +gfr dl+ G+da  +  +   t  g     
  CCG92565.1  71 SLTGYLDTSYTYNFISAHSGANramtaqiP--TRM---EsdgiagGGWNLNQVYLVAEKPMSElnewqAGFRTDLMIGQDAASMGMPdNIT--Glgtan 162
                 689***********9998887778776431..222...123456799**********************************8777773333..155887 PP

        BBP2  78 ...sstknnlkalpqAyvsakipvskgltvdaGkfaThiGyEsidskdNfnYtrsylfnng.PfihtGvranytitdklslslgvlng...wdaie... 166
                       ++ +++l qAy+++ +pv++gl++++Gkf++++ +E++  + N+n++ +++f+n  P i  G+ a y++++ + l+lg+++g   + +++   
  CCG92565.1 163 nsgLVFNTGSFLLAQAYAQFRVPVGNGLDIKMGKFMSPFAFELMERPANLNFSYGLIFSNLiPEILVGIEAIYPLSSAFELTLGITDGgfnTSRGGypf 261
                 77777788999*****************************************************************************97743333566 PP

        BBP2 167 ..ddsng..tpalggqvty.spddklslnlntlygndnpdgr...................fktqnrfiydlvltykltd...kltlilnadygeeegq 238
                   + +n+  +  ++++++y +p+++ +l+++ l g+d  +                     +++++ f+ d++  + ++    +l l+++++ g+ +g+
  CCG92565.1 262 fgFVNNEpfSSLFITSLKYeTPKKNAQLTASLLFGPDGANPPgfgfypdfpgtgvfrespfNRSAPFFLGDIYGAWIPQItkdRLLLAMEYTGGFYNGG 360
                 555555578999**************************6555667999999*********888888999*****998764445***************9 PP

        BBP2 239 knt.....gggksaewygaalyakyqftdkfalgvRgEyfddkdggaqdsigstatgngskvwalTltptykptenltvRpElrydessdd 324
                  +        ++s+ w+ga +++kyq+t ++++++R  +++ +++      +     + +++w+ Tlt+ ++++enl++R+E r d+++d+
  CCG92565.1 361 VSLpndpfLQPASSDWFGASFWMKYQLTAFLSIAFRQDWIQGSNN-----EILYQHIGRTDIWSSTLTFRFDLWENLMMRAEGRMDWGKDV 446
                 988999999999********************************5.....488899999****************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3647.00
//
Query:       CCG92566.1  [L=332]
Description: Glucokinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.7e-101  339.4   0.0     2e-101  339.2   0.0    1.0  1  Glucokinase  Glucokinase


Domain annotation for each model (and alignments):
>> Glucokinase  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.2   0.0  1.1e-105    2e-101       1     315 [.       3     325 ..       3     326 .. 0.96

  Alignments for each domain:
  == domain 1  score: 339.2 bits;  conditional E-value: 1.1e-105
  Glucokinase   1 LagDiGGTkarlalveaeeeelelleiekyasadyasleealqaflaeaeaevkrpksavlAvAgpvegdeveltNlpWviseeelakelgleaveli 98 
                  L+gDiGGT++rlal+e  +++ +l ++e ++s++ a++++++ ++l++   + + p++a+++  gpv +++v+ltNlpW+i++e+l++  g ++  li
   CCG92566.1   3 LVGDIGGTHVRLALFESVDSKDSLWHVEYFKSKEVADFQQLVGEYLKK---TKAVPQAACFGFPGPVINGKVQLTNLPWSIEIEKLREVCGTKHTFLI 97 
                  89*******************9************************95...3344568**************************************** PP

  Glucokinase  99 NDfeavayaiplleaedlvqlgggkkdaeapiavlGaGTGLGvallipekerrvvlasEGGhvdfapeseeevelleilrkklgrvsaErvlSGpGLv 196
                  ND+ea ay++++l+a+d v ++ gk+++++  a++++GTGLG+a+l +e++r+v+++sEG+hvdfap++e+e+ l+++l++ +g+vs+ErvlSGpGL 
   CCG92566.1  98 NDLEAAAYGVTVLGAKDSVIIQDGKASSTGCKALIAPGTGLGEAGLRWENGRYVPFPSEGAHVDFAPRNELEIGLFRYLHSLFGHVSYERVLSGPGLL 195
                  ************************************************************************************************** PP

  Glucokinase 197 nlyealaaad...........kleeellepaeiteaalegedplarealelFlailGsvagdlaLkllargGvyiaGGiapkilellkaseFreafed 283
                  n+y++l+++            ++e+ +++ + it+ +l++++ l+ + l+lF+++lG++ag+laLk+la gGvyiaGGi+p+i+e lk++ F e+f d
   CCG92566.1 196 NIYRYLQSTGrggleknsideEIEQSEDPSQSITSHGLAKDSSLCVQSLDLFVSLLGAEAGNLALKFLASGGVYIAGGIVPHIIEKLKEPFFKESFCD 293
                  ********99998888877766677779********************************************************************** PP

  Glucokinase 284 kgrlsellekipvyvvlneeagLlGaaaaaaq 315
                  kgrls +l++ip+ vv+ + +g+ Ga  ++++
   CCG92566.1 294 KGRLSYFLKTIPIIVVVTPFLGIYGALRYLQE 325
                  **************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 2230.71
//
Query:       CCG92567.1  [L=337]
Description: SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-11   44.6   0.0    3.2e-11   43.8   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    8.8e-10   38.7   0.0    1.9e-09   37.6   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
    9.4e-09   35.2   0.0    2.6e-08   33.8   0.0    1.8  2  Methyltransf_31  Methyltransferase domain
    9.9e-09   34.8   0.0    1.4e-08   34.3   0.0    1.2  1  Methyltransf_2   O-methyltransferase domain
    7.2e-08   33.0   0.0    2.3e-07   31.4   0.0    1.8  2  Methyltransf_11  Methyltransferase domain
    7.5e-07   28.8   0.0    1.9e-06   27.5   0.0    1.6  2  Methyltransf_4   Putative methyltransferase
    2.9e-06   27.9   0.0    5.2e-06   27.1   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    6.7e-05   22.6   0.1    0.00012   21.8   0.1    1.3  1  MetW             Methionine biosynthesis protein MetW
    0.00012   22.1   0.0    0.00022   21.2   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
     0.0002   20.9   0.0    0.00047   19.7   0.0    1.6  2  MTS              Methyltransferase small domain
    0.00086   19.2   0.1     0.0016   18.3   0.1    1.4  1  Dimerisation2    Dimerisation domain
  ------ inclusion threshold ------
      0.018   14.4   0.0      0.031   13.6   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
      0.023   14.6   0.0       0.04   13.9   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
      0.063   13.6   0.0       0.18   12.2   0.0    1.7  1  AdoMet_MTase     Predicted AdoMet-dependent methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   2.5e-14   3.2e-11       1      94 [.     170     261 ..     170     263 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 2.5e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      v+d+GcG+G l+++lakr+ k k +g+D+s e +e+a++    ++ +++f+ +d+ +++++  ++ l + s +lhhl+  +  ++++++a +L+
       CCG92567.1 170 VVDIGCGNGWLLRNLAKRFTKLKGIGIDVSREGVEQAQALSIGQKERLQFIFADFFACSLPP-KVSLFTFSRTLHHLWS-EKSRLVEKLAAHLE 261
                      89*****************88******************9988888***********99998.7888888789***995.56899999999986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   1.5e-12   1.9e-09       9     162 ..     153     319 ..     138     321 .. 0.75

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1.5e-12
  Methyltransf_23   9 lsdklerllpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae..kakkaqkdqfdeqeaaepqg....kfdlIvlrevleh 94 
                      +  k+ ++ + +r+gg v+diGcG G ll+ l+++++  + +g+D s+e ve a+  ++ + +  qf  ++a++ +     k  l + + +l+h
       CCG92567.1 153 VLPKIPFIEEIDRQGGVVVDIGCGNGWLLRNLAKRFTklKGIGIDVSREGVEQAQalSIGQKERLQF--IFADFFACslppKVSLFTFSRTLHH 244
                      556777788889********************9999878999*******999998884444444444..3333322244449999999999999 PP

  Methyltransf_23  95 vpd.ppellrqiatllkpgGylllseplasl...kedrllld.....wlylvpag..rhisffsarslkelleeaGlev 162
                      + +   +l+ ++a++l+ +  +l+ epl +    +   l  +     +++++ ++  +  ++  a +++  le+ Gl+v
       CCG92567.1 245 LWSeKSRLVEKLAAHLESDSKVLVWEPLWPEkldY---LK-QdklkpIAFQNLHEnvEGNRLLGANEIEGFLEACGLSV 319
                      997699********************864432222...22.1233334444433336888999******9999999987 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.1   2.6e+03      96     122 ..      30      50 ..       9      96 .. 0.69
   2 !   33.8   0.0   2.1e-11   2.6e-08       3     113 ..     166     272 ..     164     313 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.1
  Methyltransf_31  96 eiervlkpggilliedprllaelpakv 122
                      +i++ l+++g l ie+        +k 
       CCG92567.1  30 GIFETLHTQGKLSIESLE------EKT 50 
                      677888888888888877......333 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 2.1e-11
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl.naladpdkile 95 
                      +g +v+D+GCG+G l+ +la + ++k + +GiD s e +e+A++ +   + ++++F  +d+++ +  l   k+ l +   +l ++ +++    e
       CCG92567.1 166 QGGVVVDIGCGNGWLLRNLA-KRFTKLKGIGIDVSREGVEQAQALSI-GQKERLQFIFADFFACS--LP-PKVSLFTFSRTLhHLWSEKSRLVE 254
                      6778****************.66899******************644.44458999999999966..55.577777777777555566666666 PP

  Methyltransf_31  96 eiervlkpggilliedpr 113
                      ++   l++++ +l+ +p 
       CCG92567.1 255 KLAAHLESDSKVLVWEPL 272
                      777777777776666655 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.1e-11   1.4e-08      65     181 ..     169     285 ..     129     317 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.1e-11
                     EEEEET-TTSHHHHHHHHH-TT-EEEEEE-HH.HHHHHHHHS-----TTEEEEES-TTTS---.--SEEEEESSGGG.S-HHHHHHHHHHHHHH- CS
  Methyltransf_2  65 slvDvGGGtGalakaivsayPtikvivfDlpe.VveaAkehlsageeervefvgGdffkdslP.eaDaillkrvlhD.wsdekcvklLkrvkkal 156
                     ++vD+G G G l+++ ++ + ++k+i  D+++  ve+A+   s g++er++f+  dff  slP +  ++ ++r lh  ws++  ++l++++   l
      CCG92567.1 169 VVVDIGCGNGWLLRNLAKRFTKLKGIGIDVSReGVEQAQAL-SIGQKERLQFIFADFFACSLPpKVSLFTFSRTLHHlWSEK--SRLVEKLAAHL 260
                     68****************************86267777765.********************9899*********9736654..689******** PP

                     -TT-EEEEEE----TTS---HHHHH CS
  Methyltransf_2 157 pagGkvivveavlgadpsgeletel 181
                      ++ kv+v e + +++ +  ++ +l
      CCG92567.1 261 ESDSKVLVWEPLWPEKLDYLKQDKL 285
                     **********999888776666555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.4   5.6e+03       7      30 ..      50      73 ..      50      93 .. 0.82
   2 !   31.4   0.0   1.8e-10   2.3e-07       1      94 [.     171     266 ..     171     268 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.4
                     TSHHHHHHHHTTSEEEEEES-HHH CS
  Methyltransf_11  7 tGrlaealakrgarvvgvDlskem 30
                     tG+ +e+l++ ++  +++D+ +++
       CCG92567.1 50 TGIESEYLKRFCMAAYAFDFLDKT 73
                     588889999999999999987665 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 1.8e-10
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-.CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv.edpekalkeiaRvLkpg 91 
                      +d+GcG+G l++ lakr+   + +g+D+s e +++a++ + +++++++f+ ad+    ++  ++ l + s +lhh+  + +++++++a  L+ +
       CCG92567.1 171 VDIGCGNGWLLRNLAKRFtkLKGIGIDVSREGVEQAQALSIGQKERLQFIFADFFACSLPP-KVSLFTFSRTLHHLwSEKSRLVEKLAAHLESD 263
                      59*************99999999****************9999999**************9.999999999****9999****99999998887 PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                       ++
       CCG92567.1 264 SKV 266
                      665 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.1   5.2e+03      95     131 ..     104     142 ..     103     152 .. 0.66
   2 !   27.5   0.0   1.5e-09   1.9e-06       4      43 ..     169     208 ..     166     221 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.1
                     TSHHHHHHHHHHEEEEEEEEEEES..HHHHHHHHHHHHH CS
  Methyltransf_4  95 lqpellkelarvLkkgGvlelaTD..veeyaeemlkvle 131
                     ++p +++++ +  k gG l++     ++ ++ +m + +e
      CCG92567.1 104 FYPLMTSQILKFAKTGGHLHTFPPfeDPGVFPWMWAMME 142
                     677788888888889999988654334445555555555 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 1.5e-09
                     EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHH CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlk 43 
                     vv++iGcG+G++l +lAk++ + + +Gi++++++v+++ +
      CCG92567.1 169 VVVDIGCGNGWLLRNLAKRFTKLKGIGIDVSREGVEQAQA 208
                     89*********************************99865 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   4.1e-09   5.2e-06       1      96 [.     171     263 ..     171     266 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 4.1e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsai.edakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl.kdirevldnirkl 92 
                      ++iGcG+G llr l++++  ++ +g+D+s++ + ++ +  + ++e++++ + +++a++l    +  ++ l + s +lhhl  ++ +++++++++
       CCG92567.1 171 VDIGCGNGWLLRNLAKRFTKLKGIGIDVSREGVeQAQALSIGQKERLQFIFADFFACSLP---P--KVSLFTFSRTLHHLwSEKSRLVEKLAAH 259
                      69*******************************444456677777777777777777754...3..9**************99********999 PP

  Methyltransf_12  93 Lkpg 96 
                      L  +
       CCG92567.1 260 LESD 263
                      9866 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   9.2e-08   0.00012       7      54 ..     160     208 ..     156     216 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 9.2e-08
        MetW   7 iaelikpgsrvldlGcGdGellellkee.kqvdgrGleldeegvaecva 54 
                 i e+ ++g  v+d+GcG+G ll+ l+++  +++g G+++++egv ++ a
  CCG92567.1 160 IEEIDRQGGVVVDIGCGNGWLLRNLAKRfTKLKGIGIDVSREGVEQAQA 208
                 5666678899************9887643799************98765 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.7e-07   0.00022      27      70 ..     168     209 ..     150     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.7e-07
  Methyltransf_32  27 ltvvDvGaGkgYLsfvlalkeke.yklkvvgidakeelvekaekr 70 
                        vvD+G+G+g+L + la    +  klk +gid+++e ve+a+++
       CCG92567.1 168 GVVVDIGCGNGWLLRNLAK---RfTKLKGIGIDVSREGVEQAQAL 209
                      579****************...5589***************9987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.7     6e+03     125     146 ..      75      96 ..      73     106 .. 0.70
   2 !   19.7   0.0   3.7e-07   0.00047      30      84 ..     157     219 ..     129     234 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.7
                 HHHHEEEEEEEEEEEETTSCHH CS
         MTS 125 AkeaLkegGeLliVanrklgye 146
                 A   L++ G+L++  n+k+++ 
  CCG92567.1  75 ALYSLAPLGQLFVDENTKQKAL 96 
                 6667889999999888887764 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 3.7e-07
                 C........TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEE CS
         MTS  30 e........lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevev 84 
                          + g v+D+GcG+G l  +lak+  +++   +dv+ + +e a++    +k ++++
  CCG92567.1 157 IpfieeidrQGGVVVDIGCGNGWLLRNLAKRFTKLKGIGIDVSREGVEQAQALSIGQKERLQF 219
                 4444443336778***********************99**********999765555555555 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.3e-06    0.0016      18      84 ..      26      87 ..      12      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.3e-06
  Dimerisation2 18 AceLgvFdlLkeeeplsaeevaeelgasvkGterLldacvaLgLLerekkeekkalYsntelastyL 84
                    +  g+F++L+++++ls e + e+ g++++ ++r++ a  a++ L ++     +alYs ++l + + 
     CCG92567.1 26 GVTTGIFETLHTQGKLSIESLEEKTGIESEYLKRFCMAAYAFDFLDKT-----EALYSLAPLGQLFV 87
                   56779*****************************************44.....479*9999988876 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.4e-05     0.031      62     103 ..     166     208 ..     161     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.4e-05
                 TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHH CS
        CMAS  62 pGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakk 103
                 +G  ++diGcG G l+r+ ++r+   k +g+ +S+e  ++a++
  CCG92567.1 166 QGGVVVDIGCGNGWLLRNLAKRFtKLKGIGIDVSREGVEQAQA 208
                 78999*****************945799999999999888875 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.1e-05      0.04      12      57 ..     164     209 ..     155     228 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.1e-05
  Methyltransf_18  12 vekgsrvaDiGtDHgylpiylvkegkakkviasDinegplekaken 57 
                       ++g +v+DiG+  g l   l+k+ +  k i +D++++ +e+a++ 
       CCG92567.1 164 DRQGGVVVDIGCGNGWLLRNLAKRFTKLKGIGIDVSREGVEQAQAL 209
                      457789************************************9974 PP

>> AdoMet_MTase  Predicted AdoMet-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00014      0.18      61      90 ..     169     200 ..     159     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
  AdoMet_MTase  61 sfvdvgcgngllvyvlaae..gykgygidlrk 90 
                     vd+gcgng l+  la      kg gid+ +
    CCG92567.1 169 VVVDIGCGNGWLLRNLAKRftKLKGIGIDVSR 200
                   579*********99998752256899999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2261.64
//
Query:       CCG92568.1  [L=230]
Description: Periplasmic protein TonB [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-21   77.0   0.0    2.4e-21   75.9   0.0    1.6  2  TonB_C    Gram-negative bacterial TonB protein C-terminal
    0.00029   21.0   0.1    0.00074   19.7   0.1    1.7  1  TonB_2    TonB C terminal


Domain annotation for each model (and alignments):
>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.6   1.5e+04      13      31 ..      48      66 ..      45      67 .. 0.74
   2 !   75.9   0.0   2.7e-25   2.4e-21       3      79 .]     151     227 ..     149     227 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.6
                TEEEEEEEEEEE-TTSBEE CS
      TonB_C 13 gieGtvtveftidpdGnvt 31
                g  G+  ve++ +++G+++
  CCG92568.1 48 GAVGYSQVELVEGASGKPE 66
                5568888888888888876 PP

  == domain 2  score: 75.9 bits;  conditional E-value: 2.7e-25
                 ----HHHHHHTEEEEEEEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT-EE-TT--EEE......EEEEEEEE CS
      TonB_C   3 peYPeeArrrgieGtvtveftidpdGnvtnvkvvkssgseiLdkaAleavrkwkfkpapkngkpvtvkitvpirFkl 79 
                 p YPee r rg+eG+v++++ ++p+G++ +v+++kssg+  +dk+Ale+v++wkf+pa+ +g pvt  + vpirFkl
  CCG92568.1 151 PPYPEECRCRGQEGVVVLKVCVSPEGRPVSVQLTKSSGFLPMDKSALETVQRWKFNPAKMGGIPVTSYVIVPIRFKL 227
                 78************************************999**********************************97 PP

>> TonB_2  TonB C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   8.3e-08   0.00074      25      67 ..     163     205 ..     147     217 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 8.3e-08
      TonB_2  25 nleavveitidpdGeivsvrlvksSgneafDkavkrAiekasp 67 
                 + ++v ++ ++p G+ vsv+l+ksSg  ++Dk++++ +++ + 
  CCG92568.1 163 EGVVVLKVCVSPEGRPVSVQLTKSSGFLPMDKSALETVQRWKF 205
                 557999*********66*********************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1729.40
//
Query:       CCG92569.1  [L=128]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 927.00
//
Query:       CCG92570.1  [L=184]
Description: Starvation-inducible outer membrane lipoprotein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-44  151.0   0.0    1.8e-44  150.8   0.0    1.0  1  Slp       Outer membrane lipoprotein Slp family


Domain annotation for each model (and alignments):
>> Slp  Outer membrane lipoprotein Slp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   0.0     1e-48   1.8e-44       1     145 [.      15     163 ..      15     180 .. 0.87

  Alignments for each domain:
  == domain 1  score: 150.8 bits;  conditional E-value: 1e-48
         Slp   1 LagCasvPeeirgesatelslsevkaapeaykgkevrlGGkivkvenkkdktrleivslpLds.sgrPelsdeseGRflarvegFlDPaiykkgrlvTv 98 
                 L +C+ +++++++e+  ++s+s++  +p+aykg+ v++GG+i++++n+k+ t +e+++ pLds s+rP ++d+s GRfl+ +++FlDP iy+k+r +Tv
  CCG92570.1  15 LISCSPFSSTVKKETRGQPSFSQLLRNPQAYKGRVVMFGGTIAQTKNMKNITLIEVIQKPLDSsSDRPLDTDRSGGRFLVATSKFLDPSIYSKDRAITV 113
                 568***********************************************************989********************************** PP

         Slp  99 vGtlkgsetgkigeadytypvvevkgvklWpeeeveesyvkeyyye.......p 145
                 vG+++g++ g ig+ +y+ypv+e+++++lW e+ +   y++    +        
  CCG92570.1 114 VGKVRGVQPGVIGKRSYNYPVIEATQIHLWSESYYYPGYYY----PpgyfwgpG 163
                 ******************************33333332222....222223431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1456.93
//
Query:       CCG92571.1  [L=354]
Description: DNA repair photolyase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-11   43.0   0.0    8.6e-11   42.5   0.0    1.3  1  Radical_SAM  Radical SAM superfamily
  ------ inclusion threshold ------
        0.1   12.3   1.9       0.42   10.3   2.2    1.8  2  DUF1848      Domain of unknown function (DUF1848)


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   9.6e-15   8.6e-11       2     164 ..      71     247 ..      70     250 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 9.6e-15
                  EEESEESS--TTTSCCTT...........HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSC CS
                  xxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpet...........vrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtl 88 
                  +++rgC ++C++C+ + t            +++  +++  +  +++ +++ k++   ++v+++g +  ++p ++ + + ++ l   +i + +  + tl
   CCG92571.1  71 NPYRGCEHGCIYCYARPTheylgfslgvdFESRILVKTQAPLLLEKTLRSPKWK--PRVVMVSGVTDCYQPCEAHFKLTRSCL---EIFLKYHNPVTL 163
                  689**********************75544444444444444444444444433..455555555555555444444444444...888888888888 PP

                  HG........HHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHT.CTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHH CS
                  xx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  89 pd........eeklerllelgvdrvslgleaaddekvlklmn.rghtfeevlealeklreagikrvvdrivglpGendeeleell 164
                  ++         ++l++l++ ++  v l++ ++d++    +++ r  ++  +le++  l++agi++ v + +++pG nd e+ ++l
   CCG92571.1 164 ISksrlvcrdLDILKALAKENLLSVFLSITTLDPK-LAAILEpRASSPALRLETISSLAAAGIPVGVMVAPIIPGLNDFEMPKIL 247
                  88888889999************************.999999999*********************************8887776 PP

>> DUF1848  Domain of unknown function (DUF1848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.2   4.6e-05      0.42     253     265 .]      73      85 ..      66      85 .. 0.91
   2 ?   -2.6   0.0       0.4   3.6e+03      77     106 ..     191     221 ..     167     225 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.6e-05
     DUF1848 253 yntClhgCvYCYA 265
                 y  C+hgC+YCYA
  CCG92571.1  73 YRGCEHGCIYCYA 85 
                 999*********9 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.4
     DUF1848  77 fqfTltdyeke.lepnvpsleerietfkels 106
                   +Tl +  ++ lep+  s + r+et+++l+
  CCG92571.1 191 SITTLDPKLAAiLEPRASSPALRLETISSLA 221
                 2345666555569999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2841.01
//
Query:       CCG92572.1  [L=338]
Description: Transcriptional regulator, LysR/CysB family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-31  106.8   0.0    1.2e-30  106.4   0.0    1.1  1  LysR_substrate  LysR substrate binding domain
    7.5e-16   57.8   0.1    1.4e-15   56.9   0.1    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.064   13.1   0.2       0.11   12.3   0.2    1.4  1  HTH_5           Bacterial regulatory protein, arsR family
        0.1   11.7   0.0        0.2   10.8   0.0    1.6  1  PBP_like        PBP superfamily domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   2.8e-34   1.2e-30       4     205 ..     108     311 ..     105     314 .. 0.93

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 2.8e-34
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS...CCTTEEEEEEEEEEEEEEEETTSGGGG..S CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp...edsglearpLaeeplvlvaspdhpLar..g 93 
                      +g+Lriga+ t+++y +p  l +f++++P++++++++++++el +  +  +lDl+++ +p+    ++ +++ +++++++vl+  +dhp a+  +
      CCG92572.1 108 YAGTLRIGATVTASNYYIPLSLVEFQKKFPGIRISVETAPTHELFR--RMSDLDLGFVEDPIeeeVPETFQIKRWWKDQIVLIYWKDHPKADrwK 200
                     68********************************************..77789****************************************** PP

                     SSECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEE CS
  LysR_substrate  94 epvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyr 188
                       v le+L d+p i +e++sg r ++e+  +++gl+ +  +ev+ ++a++++v+a +Gi+++ r +++++  d   +    p++ +++ + ++ +
      CCG92572.1 201 NGVMLEELIDYPIIWREPESGVRKTIEREIEKKGLRFKLCFEVSGADAVKEAVRAKMGIGFVARRVLEHSNSDLLFS-EINPPHGVEWWINIIEP 294
                     *******************************************************************7754444444.44455588899999*** PP

                     TTCCCHHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidflr 205
                      ++  s+a++a++d++ 
      CCG92572.1 295 NDKMKSRATQALVDLCM 311
                     **************986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.1   3.2e-19   1.4e-15       2      60 .]      23      81 ..      22      81 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 3.2e-19
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++l ++++v +e+s+tr Ae L+l qpa+s+++++L+ ++g+pL  R+g+ ++LT+aGe
  CCG92572.1 23 NHLLTLLKVIREKSVTRVAELLNLGQPAISARLRQLNMAVGEPLYRRKGHEVVLTPAGE 81
                7899*******************************************9999*******7 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   2.6e-05      0.11      10      40 ..      28      59 ..      24      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
                HHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHH CS
       HTH_5 10 lLae.gelcvcelaeelglsqstvShHLkkLr 40
                lL   +e++v+  ae l+l q+++S  L++L 
  CCG92572.1 28 LLKViREKSVTRVAELLNLGQPAISARLRQLN 59
                444479************************96 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.4e-05       0.2      66     191 ..     180     309 ..     130     311 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.4e-05
                 CC-HCHCCCCHCCHHH.....S--BGGGC-S-B-EEEEE-TTSHHHHHHHHHHC-CEECTE-SSTTSEEESSHHHHHCCHCCETTCCECCCGG-HCCCC CS
    PBP_like  66 larreqglvvakgnpk.....kitnwkdladaplrlvnRetGSGtrdlfdellkkegiskssikgyaqearshlavaaaVaagradvgvgieavaeelk 159
                 ++++++ l++ k+ pk     +   +++l d p  ++ Re  SG r+ ++++++k+g++ + +     e+   +av++aV+a ++   v+ +   ++  
  CCG92572.1 180 WWKDQIVLIYWKDHPKadrwkNGVMLEELIDYP--IIWREPESGVRKTIEREIEKKGLRFKLCF----EVSGADAVKEAVRAKMGIGFVARRVLEHSNS 272
                 555555555555555533222244455665554..566***************99888775555....68899*******9999877778888888888 PP

                 CCECTTCE-.....EEEEEEEECTCCCSHHHHHHHHH CS
    PBP_like 160 gldfvplae.....erydlvvrkealddpevqaflef 191
                 +l f +++      +   ++ + +++++++ qa++++
  CCG92572.1 273 DLLFSEINPphgveWWINIIEPNDKMKSRATQALVDL 309
                 8888887777777788889999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2533.35
//
Query:       CCG92573.1  [L=136]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1036.47
//
Query:       CCG92574.1  [L=815]
Description: ATP-dependent protease La Type II [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     4e-194  646.2   0.0     5e-194  645.8   0.0    1.1  1  AAA_32           AAA domain
    3.7e-09   36.4   0.1    2.5e-08   33.7   0.0    2.1  2  Lon_C            Lon protease (S16) C-terminal proteolytic do
     0.0039   17.1   1.0     0.0039   17.1   1.0    2.4  2  DUF2205          Short coiled-coil protein
  ------ inclusion threshold ------
      0.015   15.2   1.1      0.015   15.2   1.1    2.6  2  ATPase_2         ATPase domain predominantly from Archaea
      0.022   15.1   1.6       0.12   12.8   0.2    2.8  3  AAA_16           AAA ATPase domain
      0.035   14.0   0.0       0.18   11.7   0.0    2.2  2  NACHT            NACHT domain
      0.062   13.5   2.4        0.5   10.5   0.1    2.7  2  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
       0.38   10.9   3.4       0.32   11.1   0.6    2.2  2  7TMR-HDED        7TM-HD extracellular
       0.58   10.5   3.8        1.8    9.0   3.8    1.9  1  DUF2390          Protein of unknown function (DUF2390)
        1.2    8.8   5.1       0.82    9.4   0.2    2.8  3  DUF4972          Domain of unknown function (DUF4972)
        3.1    8.7   9.5         34    5.4   9.5    2.7  1  FliT             Flagellar protein FliT


Domain annotation for each model (and alignments):
>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  645.8   0.0  3.1e-197    5e-194       5     511 ..      30     542 ..      26     545 .. 0.98

  Alignments for each domain:
  == domain 1  score: 645.8 bits;  conditional E-value: 3.1e-197
      AAA_32   5 epleeiigqeRAvealefglkikkkgYNifvlGesgtGrttlvkrlleeiakkeptpdDwcYvnnfdnpeePkalsLpaGkGkelkkdmeelveelkke 103
                 +   ++igq+RA +a++fgl+++k+gYNifv+G++g+G++ +++++l+e+a++ p p+DwcYv nf+++++Pkal + aGk++e+++dm+++v++lk  
  CCG92574.1  30 PVGIHFIGQQRAYDAFDFGLSVSKPGYNIFVMGPPGIGKKAFLEKILQERAATGPLPSDWCYVFNFEEENKPKALAFAAGKASEFAEDMARVVDDLKIG 128
                 555689********************************************************************************************* PP

      AAA_32 104 ipkafeseeYeerkeeieeefeekeeelleelekeaeekgfalkrtpegivlvPlkdgkplseeefealpeeerkeleekseeleeeleeilrelrele 202
                 ip++fes+eY++r +eie+ef +++ee+l++l+++a+++g+al++tp+gi+++P k g++l++e+++alpeee++++e+++++l+eel+ ilr++++++
  CCG92574.1 129 IPSIFESDEYRTRAQEIEQEFLDRREEALNQLRERAQKEGIALLQTPAGIAFAPFKGGEVLDPEKYNALPEEEKRRIEAAIRKLQEELTAILRQIPKWR 227
                 *************************************************************************************************** PP

      AAA_32 203 keakeklkelerevakeaveplleelkekykdlekvleyLeaveedilenlelfleeeeeeeeee......kkkkedelkrYkvnvlvdnsetegaPVv 295
                 kea++kl+el+r+ ++ +v++l+eelk+kyk++e+vl +Le++++d+l+n+e+f+  +e+e          +++ e +l+rYkvnv++d+s+++g P+v
  CCG92574.1 228 KEAQNKLRELNRSYIQGLVSSLFEELKAKYKKMEAVLLHLEEIQKDVLKNAENFRLPRESEGPPIpgmsgpSQSMEYFLRRYKVNVIIDHSKSKGIPIV 326
                 ********************************************************99999876699***9999************************* PP

      AAA_32 296 vednptyanLfGkieyesemgalvtdftlIkaGaLhkAnGGyLildaedlLeeplaWeaLkraLrskeikiesleeqlglistvsLkPepipldvKViL 394
                 +ednpt+ nL+G+ie+ ++mgal tdftlI++GaLh+ nGGyLi+da ++L++p++We+LkraLrs++ikie+l+e+lgl+stvsL+P+pipl++KViL
  CCG92574.1 327 FEDNPTFVNLTGRIEHIAQMGALLTDFTLIRPGALHRSNGGYLIVDALRVLSHPYSWEGLKRALRSQQIKIEPLGEALGLLSTVSLEPQPIPLNLKVIL 425
                 *************************************************************************************************** PP

      AAA_32 395 iGsrelYylLseyDpdfkklFkvkadFddemerteenekkyarfiasivkkekllpfdrsavarlieyssrlaedqeklstrfseiadllrEAdywakk 493
                 iG+r +YylL++ Dp+fk+lFk++adF +e++ +++n   y+++ias+++++++ p+++sa+  ++++s r ++d++k+s+++++i dll+E++yw kk
  CCG92574.1 426 IGDRLIYYLLYQFDPEFKDLFKITADFSEEFDASPQNLLPYCQLIASLCQSQGIAPLEKSALRLIVKQSLRFSQDAKKFSLNIRKILDLLEESEYWRKK 524
                 *************************************************************************************************** PP

      AAA_32 494 egaevveaehVekAleek 511
                 e+a +++a hV+ A+ + 
  CCG92574.1 525 ENAPLISAGHVQSAIISS 542
                 **************9665 PP

>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.38   6.2e+02      22      40 ..     566     584 ..     548     605 .. 0.75
   2 !   33.7   0.0   1.5e-11   2.5e-08     108     201 ..     655     759 ..     653     762 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.38
                 SS--BSSEEEEEEEETTEE CS
       Lon_C  22 ekedqvGvvtGlawtevGG 40 
                  k  +vG+v Gla  ++G 
  CCG92574.1 566 TKGRKVGQVNGLAVIDMGN 584
                 35679*********99985 PP

  == domain 2  score: 33.7 bits;  conditional E-value: 1.5e-11
                 GGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHH.....HHHHHT..T-SBEEEEGGGGGGT...TTS-HHHHTS-.B--EESBH CS
       Lon_C 108 dGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekl.....laakra..gikkvilPkenekdl...ediPeevreel.eiilveev 195
                 +G sa  + + al+s+l++ ++ + +a+tG i   G++ +iGG+ ek+      ++ r+  g + vi+P++n ++l   e++ e+v ++l +i +v+++
  CCG92574.1 655 EGDSASAAELCALLSALSEYPIYQSIAITGSINQLGEIQAIGGVNEKIegffdTCSVRGfdGNNGVIIPSSNLQHLvlkEEVLEAVEKGLfKIYAVKTI 753
                 699********************************************933322234443337789**********988889*****998768999**** PP

                 HHHHHH CS
       Lon_C 196 devlka 201
                 de ++ 
  CCG92574.1 754 DEAMEI 759
                 *98875 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.0   2.4e-06    0.0039       7      65 ..     191     247 ..     187     256 .. 0.87
   2 ?   -0.9   0.1         1   1.6e+03       9      26 ..     545     562 ..     541     566 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.4e-06
     DUF2205   7 sedveklerearerLqqqakeLqssLqaLaervdeVkee.hdKLesenrfLqqYIgdLms 65 
                 +e+ ++l +e++ r+++ + +Lq+ L a++ ++ + ++e ++KL+  nr   +YI  L+s
  CCG92574.1 191 PEKYNALPEEEKRRIEAAIRKLQEELTAILRQIPKWRKEaQNKLRELNR---SYIQGLVS 247
                 67789999**************************99777368****998...68888876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1
     DUF2205   9 dveklerearerLqqqak 26 
                  ++++e++ +e +q+q+ 
  CCG92574.1 545 RINRVEEQLKESIQRQIL 562
                 68999*********9986 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   1.1   9.3e-06     0.015      22      83 ..      57     177 ..      50     282 .. 0.66
   2 ?   -3.0   0.2       3.3   5.4e+03      83     121 ..     529     561 ..     498     571 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.3e-06
    ATPase_2  22 iyfiYGpegsGKtaLlkeiienledkdk...yviyyialreesiskldefieeeeekkklekal................................... 82 
                  +f+ Gp g+GK a+l +i++++   +    +  y+++++ee+  k+  f +   +++++++ +                                   
  CCG92574.1  57 NIFVMGPPGIGKKAFLEKILQERAATGPlpsDWCYVFNFEEENKPKALAFAA--GKASEFAEDMarvvddlkigipsifesdeyrtraqeieqefldrr 153
                 58*********************988877779******************44..444444444435556666666666655555555555555555555 PP

    ATPase_2  83 .......................g 83 
                                        g
  CCG92574.1 154 eealnqlreraqkegiallqtpaG 177
                 555555555555555555555553 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.3
    ATPase_2  83 giavpkaeleeilkeksklvfkaielllekikkkgkkii 121
                 +i  + ++   i+       +k i+++ e++k++ ++ i
  CCG92574.1 529 LISAGHVQSAIIS------SYKRINRVEEQLKESIQRQI 561
                 3444443332222......23444445555555444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   7.3e-05      0.12      25     107 ..      56     193 ..      35     272 .. 0.63
   2 ?   -1.3   0.0       1.5   2.5e+03      38      96 ..     217     266 ..     217     308 .. 0.56
   3 ?   -0.5   0.1      0.88   1.4e+03      66     126 ..     494     556 ..     449     571 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.3e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekd....................ggiflrgkcdqlesaipy......salaqalareellrqlldeaesaeleaw 97 
                  ++++ G++G+GK + ++++l++  ++                       f++gk+ ++ +++++      + + +++ +++ +r  ++e e+ e+ + 
  CCG92574.1  56 YNIFVMGPPGIGKKAFLEKILQERAATgplpsdwcyvfnfeeenkpkALAFAAGKASEFAEDMARvvddlkIGIPSIF-ESDEYRTRAQEIEQ-EFLDR 152
                 589******************855555779988888888888887744666888888885554444455542244444.22444444444222.22222 PP

      AAA_16  98 rekleeala...............................a 107
                 re+ + +l+                                
  CCG92574.1 153 REEALNQLReraqkegiallqtpagiafapfkggevldpeK 193
                 22222222233334555666677777666666666666663 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
      AAA_16  38 sslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaelea 96 
                 ++++r+++  ++k+    ++ k ++l  +++y++ l++ l +eel ++ + +  +a l +
  CCG92574.1 217 TAILRQIP-KWRKE----AQNKLREL--NRSYIQgLVSSL-FEELKAKYKKM--EAVLLH 266
                 67778888.57777....77888888..555655555555.33554444444..222333 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.88
      AAA_16  66 aipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea......srllellkrl 126
                 ++++s+ a+ +     +r++ld     e e+wr+k  + l +++++ +a+       +r+ e+lk+ 
  CCG92574.1 494 SLRFSQDAKKF-SLN-IRKILDL--LEESEYWRKKENAPLISAGHVQSAIIssykriNRVEEQLKES 556
                 34445555555.213.3333333..245788888887777766666666666666664444444433 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.18       3      41 ..      58      96 ..      56     107 .. 0.80
   2 ?   -1.8   0.0       1.6   2.6e+03      42      84 ..     234     275 ..     230     316 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                EEEEC-TTTCHHHHHHHHHHH.HCTS-SCCCC-SEEEEEE CS
       NACHT  3 vilqGeaGsGKTtLlqklala.waegklpqgafklvFfls 41
                +++ G++G+GK ++l+k+ ++ +a+g lp++  ++vF ++
  CCG92574.1 58 IFVMGPPGIGKKAFLEKILQErAATGPLPSD-WCYVFNFE 96
                7899**************9873566777776.58888765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.6
                 TTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE CS
       NACHT  42 lrelsrsgnarsladllfsqlpepaapvsevwavllelperlL 84 
                 lrel+rs  + +l   lf++l+++ ++ + v  +l e+++ +L
  CCG92574.1 234 LRELNRSY-IQGLVSSLFEELKAKYKKMEAVLLHLEEIQKDVL 275
                 56777764.4589999999999999999999999999998887 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.3      0.16   2.6e+02      16      49 ..     132     166 ..     106     179 .. 0.73
   2 ?   10.5   0.1   0.00031       0.5       8      55 ..     177     227 ..     172     251 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.16
                      ---.-----G.GGHHHHH.HHHHHHHHHHHHHHHH CS
  PEP-utilisers_N  16 eveveeeeveaedveael.erleeAlekvreelea 49 
                       +e +e++++a+++e+e  +r eeAl+++re+ ++
       CCG92574.1 132 IFESDEYRTRAQEIEQEFlDRREEALNQLRERAQK 166
                      335678889999999997689999*9999999877 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00031
                      SEEEEEEE.....---.-----G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH...T CS
  PEP-utilisers_N   8 GiaiGkav.....eveveeeeveaedveaelerleeAlekvreelealaeka...l 55 
                      Gia+++       +      e  ++ +e+e +r+e+A++k++eel+a+ +++    
       CCG92574.1 177 GIAFAPFKggevlD----P-EKYNALPEEEKRRIEAAIRKLQEELTAILRQIpkwR 227
                      77777777663221....1.12234499******************9776766652 PP

>> 7TMR-HDED  7TM-HD extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6    0.0002      0.32      43     152 ..     143     241 ..     113     320 .. 0.66
   2 ?   -0.9   0.1      0.88   1.4e+03      94     143 ..     484     559 ..     434     578 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
   7TMR-HDED  43 pevteqvrqelenlleeleelratseenlselieqlkqarekyaqa...............gaelsdeelrallelsdeeleelqqgieqilerilsqg 126
                 +e+++++ ++                   +e ++ql+++ +k+  a               g+ l++e+++al e +++++e++ +++++ l +il+q 
  CCG92574.1 143 QEIEQEFLDRR------------------EEALNQLRERAQKEGIAllqtpagiafapfkgGEVLDPEKYNALPEEEKRRIEAAIRKLQEELTAILRQ- 222
                 33333333333..................444555555555554447777777778899998888999999999966655555555555555555555. PP

   7TMR-HDED 127 iped.eearekvkeqlqaalseearel 152
                 ip+  +ea++k++e l       +r+ 
  CCG92574.1 223 IPKWrKEAQNKLRE-L-------NRSY 241
                 33333345555555.2.......1122 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.88
   7TMR-HDED  94 deelrallelsdeeleelqq...gieqilerilsq...giped.......................eearekvkeqlqa 143
                 +++lr +++ s ++++++++   +i++il+ + ++   +   +                       ++++e++ke++q 
  CCG92574.1 484 KSALRLIVKQSLRFSQDAKKfslNIRKILDLLEESeywR---KkenaplisaghvqsaiissykriNRVEEQLKESIQR 559
                 444444444444333333332222222222222221110...0112222222233333333344443444444444433 PP

>> DUF2390  Protein of unknown function (DUF2390)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.8    0.0011       1.8      48     106 ..     213     274 ..     200     275 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
     DUF2390  48 aeelaaleaavaewreevvkplRalRralkaaase..dea.ealreqlkavELeaErvelea 106
                 +eel a+ +++ +wr+e+  +lR+l r   + + +   e+ +a ++++ av L++E ++ + 
  CCG92574.1 213 QEELTAILRQIPKWRKEAQNKLRELNRSYIQGLVSslFEElKAKYKKMEAVLLHLEEIQKDV 274
                 6889999******************999888887778556699999999999***9988765 PP

>> DUF4972  Domain of unknown function (DUF4972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   1.8e+03      31      58 ..     136     162 ..     119     168 .. 0.69
   2 ?   -0.6   0.2      0.59   9.6e+02      68     102 ..     193     227 ..     191     242 .. 0.71
   3 ?    9.4   0.2    0.0005      0.82      48     100 ..     503     555 ..     495     567 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
     DUF4972  31 desytaveevkteiyieqleelinkltd 58 
                 de  t ++e++ +++ ++ ee +n+l++
  CCG92574.1 136 DEYRTRAQEIE-QEFLDRREEALNQLRE 162
                 45455666666.6777777777776653 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.59
     DUF4972  68 kkgmYPeesraiLedaivklkesiakikegnkaea 102
                 k +  Pee +  +e ai kl+e +  i  + ++  
  CCG92574.1 193 KYNALPEEEKRRIEAAIRKLQEELTAILRQIPKWR 227
                 55667899999999999999999888877665544 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0005
     DUF4972  48 qleelinkltdLrdesqyGekkgmYPeesraiLedaivklkesiakikegnka 100
                 +++  i+k+ dL +es+y  kk++ P  s   ++ ai++  + i++++e+ k 
  CCG92574.1 503 KFSLNIRKILDLLEESEYWRKKENAPLISAGHVQSAIISSYKRINRVEEQLKE 555
                 6778899****************************************998765 PP

>> FliT  Flagellar protein FliT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   9.5     0.021        34      31      78 ..     189     240 ..     142     241 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.021
                 -....-ST--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHH CS
        FliT  31 d....aaplspaereekrellrrilandaeirallqprldelqkllgalrrq 78 
                         l+++e++++++++r+++++  +i +++ +++ e q++l++l+r+
  CCG92574.1 189 LdpekYNALPEEEKRRIEAAIRKLQEELTAILRQIPKWRKEAQNKLRELNRS 240
                 045557889***************************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1215  (0.0677673); expected 358.6 (0.02)
Passed bias filter:                      903  (0.0503653); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 5330.86
//
Query:       CCG92575.1  [L=267]
Description: UspA family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.004   17.7   0.0         18    5.8   0.0    3.4  3  Usp       Universal stress protein family
  ------ inclusion threshold ------
       0.15   12.8   0.1       0.21   12.2   0.1    1.2  1  MDMPI_N   Mycothiol maleylpyruvate isomerase N-terminal domai


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0     0.002        18      97     139 ..     105     147 ..      15     149 .. 0.76
   2 ?    2.9   0.0     0.016   1.4e+02      18      47 ..     171     200 ..     158     217 .. 0.72
   3 !    5.2   0.0    0.0032        28      89     139 ..     220     265 ..     211     267 .] 0.75

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.002
                 HHHHHTTSSEEEEESCCSSTTTTCS..SBHHHHHHHHHTSSEEEE CS
         Usp  97 evaeeedadliVvGsrgrsglsrll..lGSvseyvlrhapcpVlv 139
                 +++ ++++dli+v ++g   +s +l    +   ++l++a++pVl 
  CCG92575.1 105 LIEAAKNCDLIIVSQKG--PFSNFLsfYEDPLFQLLEEAKKPVLF 147
                 5667788*********9..66666555677777888888888875 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHCTSEEEEEEEEESSHCCCC CS
         Usp  18 AlewAlelakargaelillhvidprasgav 47 
                  l +A++lak+++++l+l  +  + +s++ 
  CCG92575.1 171 ILTFAANLAKKFNGALTLFVFNGSLSSTQK 200
                 6899***********998766555555554 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0032
                 SSHHHHHHHHHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEE CS
         Usp  89 gdpaeeilevaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlv 139
                 g+   +++ +  ee++ l++   +g  gl+++    + +++lr+ +cpVl+
  CCG92575.1 220 GKDPMALVSTIAEEKIGLLIFSMTG-IGLKKV----TLKSLLRKLHCPVLL 265
                 5555566777777788888888888.777774....7899*********97 PP

>> MDMPI_N  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.4e-05      0.21      72     133 ..      52     108 ..      33     110 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.4e-05
     MDMPI_N  72 aeavdlaaslapeallaafraavtrlaaalaalppdaiadrlgipggprslgeflrtrlvEa 133
                 +   +l +sl+pe ll +fr ++ ++ +++aa     ia++l ip + +++  fl++ l Ea
  CCG92575.1  52 EIHSALTRSLEPESLLRRFRTMANQMEQQIAA-----IAKELNIPWSFQTARGFLWMELIEA 108
                 6677899************************8.....67777777778887789**999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 1732.12
//
Query:       CCG92576.1  [L=821]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-17   62.2   0.0    1.7e-16   61.2   0.0    1.6  1  Methyltransf_24  Methyltransferase domain
     0.0037   17.2   0.1     0.0094   15.9   0.1    1.7  1  DUF4428          Domain of unknown function (DUF4428)
  ------ inclusion threshold ------
       0.32   10.8   1.9        5.2    6.9   0.2    2.7  2  zinc_ribbon_2    zinc-ribbon domain
        1.2    9.2   3.1         21    5.2   0.2    2.5  2  Zn_Tnp_IS1595    Transposase zinc-ribbon domain


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   3.7e-20   1.7e-16       1     104 [.      47     161 ..      47     163 .. 0.92

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 3.7e-20
  Methyltransf_24   1 vEiGvysGvstlwllralrrnga.grlvavdhdpg.......aeeaaalare...aglddrvrlikadseealaslaagsiDllfiDgghaaea 83 
                      vEiG y+  s++++++a++  +  + ++ +dh+ g       ++e ++l++      + ++ +l++  +++al  +++gsiDll+iDg+ ++ +
       CCG92576.1  47 VEIGLYKLDSYCAFCQAVKYLHYpTACYGIDHWNGdentppvEKEEQELLEAyhyPRYGSFSKLLSTSFDDALDFFKDGSIDLLHIDGSSTYPS 140
                      8*******************9999***********88888876666777776777888888********************************* PP

  Methyltransf_24  84 vledleallprlapggvvlfd 104
                      v++ +e +lp+++++g+vl++
       CCG92576.1 141 VRHNFEKWLPKMSDRGIVLLH 161
                      ********************9 PP

>> DUF4428  Domain of unknown function (DUF4428)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.1e-06    0.0094       1      33 [.     611     644 ..     611     657 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.1e-06
     DUF4428   1 iCaiCgkKigl.lkrlkleDgyvCkdClkKlsef 33 
                 +C++Cgk++++ ++++   D ++C+ C +K  +f
  CCG92576.1 611 PCPVCGKELPIkISSTPSHDQILCPYCHSKELDF 644
                 5*********97899*************996555 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2    0.0012       5.2      12      23 .]     608     619 ..     606     621 .. 0.70
   2 ?    2.2   0.1     0.037   1.6e+02      15      20 ..     633     638 ..     628     640 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0012
  zinc_ribbon_2  12 nakFCpyCGtpl 23 
                    n++ Cp CG +l
     CCG92576.1 608 NNPPCPVCGKEL 619
                    667777777765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.037
  zinc_ribbon_2  15 FCpyCG 20 
                     CpyC 
     CCG92576.1 633 LCPYCH 638
                    699996 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2    0.0048        21      17      34 ..     608     625 ..     607     631 .. 0.83
   2 ?    3.8   0.2     0.013        57      19      28 ..     632     641 ..     627     647 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0048
  Zn_Tnp_IS1595  17 ngfvCPhCgsrkayrikt 34 
                    n++ CP Cg++ +++i++
     CCG92576.1 608 NNPPCPVCGKELPIKISS 625
                    5567******99998875 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.013
  Zn_Tnp_IS1595  19 fvCPhCgsrk 28 
                      CP+C+s++
     CCG92576.1 632 ILCPYCHSKE 641
                    45*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2340  (0.130515); expected 358.6 (0.02)
Passed bias filter:                      792  (0.0441742); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.52
# Mc/sec: 4747.91
//
Query:       CCG92577.1  [L=379]
Description: Thiamine biosynthesis enzyme ThiH [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-24   85.3   0.0    7.7e-24   83.7   0.0    1.8  2  BATS         Biotin and Thiamin Synthesis associated domain
    5.2e-08   33.4   0.0    1.1e-07   32.4   0.0    1.5  1  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> BATS  Biotin and Thiamin Synthesis associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.38   3.4e+03      18      57 ..     127     164 ..     121     183 .. 0.68
   2 !   83.7   0.0   8.6e-28   7.7e-24       1      86 []     238     363 ..     238     363 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.38
                 HHHHHHSTTSECCCTCHH-HHHHHHHHHCCT--EEE-C-- CS
        BATS  18 aalRlllPkagillsgResaefrdqlllklGansisagsk 57 
                 + +R l+P + i ++  e+ ++ ++++ ++G+  +++ ++
  CCG92577.1 127 TKIRPLFPSIAIEVAPLET-AEYERMI-EAGVEGVVVYQE 164
                 5566677777776666663.4445566.899988877654 PP

  == domain 2  score: 83.7 bits;  conditional E-value: 8.6e-28
                 E--B----..........TCCCCHHHHHHHHHHSTTSECCCTCHH-HHHHHHHHHCCT--EEE-C---TTTGGG......................... CS
        BATS   1 siprlrpi..........kdtpllkiiaalRlllPkagillsgResaefrdqlllklGansisagsktevggya......................... 64 
                 s+prlrp+           d++++++++a+R+++P++gi+ls+Re+++fr++l+ ++G++++sags+te+ggy+                         
  CCG92577.1 238 SLPRLRPAaggftppyplGDRDIFHFMCAFRVCFPQVGIVLSTREEPAFRERLI-PFGITAMSAGSRTEPGGYTlagihalhrgskgkvialceeekkv 335
                 79*************9999***********************************.******************************************** PP

                 ......SESSTT-TCCCCHHHHHHTT-E CS
        BATS  65 ......flttdgrsleedvkmleelGle 86 
                       f+++d+r+++e++ +l+++G+e
  CCG92577.1 336 akateqFEISDRRDAKEIATVLKKMGYE 363
                 **************************96 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   1.3e-11   1.1e-07       5     146 ..      64     203 ..      61     217 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.3e-11
                  SEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC.CCTEEEEEEECSSCHGHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   5 rgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla.vpgiritvetngtlpdeeklerllelg 101
                  + C + Cs+C ++++  +     +l++ e+l+e+ +l ++ g + ++l+ ge      +  +le+++ +      +i++e+ ++       er+ e+g
   CCG92577.1  64 NECINSCSYCGFSRD--NSILRLTLTPSEVLQEATYL-WNEGFRSILLVAGEHPKFVSL-SYLEECVTKIrPLFPSIAIEVAPLE--TAEYERMIEAG 155
                  679***********8..********************.****66666666655444433.4444444433222333344444444..678******** PP

                  -SEEEEEEBSSSHH...HHHHHHTCTSHHHHHHHHHHHHHHTTSET.EE CS
                  xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
  Radical_SAM 102 vdrvslgleaadde...kvlklmnrghtfeevlealeklreagikr.vv 146
                  v  v +  e++++e    +++   ++++f  +le++e++ +ag +r  +
   CCG92577.1 156 VEGVVVYQETYNPElysLYHRFG-PKKDFFWRLESVERAYAAGARRlGI 203
                  **************885555555.******************9997533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2490.86
//
Query:       CCG92578.1  [L=76]
Description: Sulfur transfer protein involved in thiamine biosynthesis [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-07   31.6   0.1    2.4e-07   31.3   0.1    1.2  1  ThiS       ThiS family
  ------ inclusion threshold ------
      0.015   15.3   0.2      0.032   14.3   0.2    1.7  1  ThiS-like  ThiS-like ubiquitin


Domain annotation for each model (and alignments):
>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.1   2.7e-11   2.4e-07       2      77 .]      14      76 .]       5      76 .] 0.88

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2.7e-11
                EETTCCHHHHTCEEEEESSTSBHHHHHHHHHHHTCHHGTTTTEEEEETTEEEGC.CTTTSB--TTCEEEEEESTTC- CS
        ThiS  2 llfaelrelageeelelaegstvaelleaLgerypelalerrvavavNgeivpr.lwldtelkdgDevailppVaGG 77
                ++++        + + ++ +++v  ll++L+ ++      + v v++N++ + + ++++t+l+++D+++++ + aGG
  CCG92578.1 14 TVNG--------QLISVPKNTSVLLLLKQLNLDQ------NIVFVELNKNALLKkEYEQTILQPNDRLELVRVTAGG 76
                4444........5555666***************......**************88********************9 PP

>> ThiS-like  ThiS-like ubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   3.6e-06     0.032       1      32 [.      11      42 ..      11      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.6e-06
   ThiS-like  1 MkIklNekeveveegttlealkekikpdaDvv 32
                ++I++N++ ++v ++t++  l ++++ d+++v
  CCG92578.1 11 IQITVNGQLISVPKNTSVLLLLKQLNLDQNIV 42
                68***************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 558.72
//
Query:       CCG92579.1  [L=384]
Description: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-43  147.7   0.0    3.2e-43  147.2   0.0    1.2  1  ATP-grasp        ATP-grasp domain
    4.3e-18   64.7   0.0    7.6e-18   63.9   0.0    1.4  1  PurK_C           Phosphoribosylaminoimidazole carboxylase C-t
    1.3e-05   24.9   0.0    0.00017   21.2   0.0    2.1  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
     0.0082   15.5   0.0      0.014   14.8   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
  ------ inclusion threshold ------
      0.024   14.2   0.0      0.072   12.6   0.0    1.7  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
      0.079   12.7   0.0       0.13   12.0   0.0    1.4  1  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
      0.081   12.2   0.0       0.12   11.7   0.0    1.2  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
       0.11   11.9   0.0       0.19   11.2   0.0    1.3  1  ATP-grasp_5      ATP-grasp domain
       0.14   12.6   0.0       0.83   10.2   0.0    2.1  1  XdhC_C           XdhC Rossmann domain


Domain annotation for each model (and alignments):
>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.2   0.0   1.6e-46   3.2e-43       2     171 .]     114     284 ..     113     284 .. 0.98

  Alignments for each domain:
  == domain 1  score: 147.2 bits;  conditional E-value: 1.6e-46
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC.GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEEE CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal.keekvivEefvpfekElsvlvvrsaeGetafypvvetv 99 
                 +k g+p+ ++ +v++ eel ++a+elg+p ++K+++lgydGkGq  + s ed   a+e++ k    ++E++v++  E sv++ r+ + +++f+p+  + 
  CCG92579.1 114 SKRGFPTVSYKVVNRPEELGSVAAELGFPSILKTAQLGYDGKGQVSLSSIEDCFLAWENIgKPDVALLEKRVELLAEFSVIIGRDHKKNVSFFPIPRNF 212
                 57899*******************************************************7777889******************************** PP

                 EETTEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS--GGGGGHHHHB CS
   ATP-grasp 100 qedgilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRpHnsGhvtldaa 171
                 +++gil   + p+ + ++ +k+a eia +i+++L+ +G++avE+F++e++++lvnElapRpHnsGh++ld +
  CCG92579.1 213 HKKGILDFTIIPSGLGKRLEKEAMEIAFEIASALDLIGLLAVEFFLTENEDILVNELAPRPHNSGHFSLDVC 284
                 *********************************************************************987 PP

>> PurK_C  Phosphoribosylaminoimidazole carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   3.8e-21   7.6e-18       2      54 ..     311     367 ..     310     369 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 3.8e-21
      PurK_C   2 vMvNlLGedae....ekleellaipgahlHlYgKeearpgRKmGHitvvgdsaeele 54 
                 +M NlLG+ +     ++++ell++pg++lHlYgK++ r gRKmGH  +vg++ e++ 
  CCG92579.1 311 CMRNLLGDLWRgdnqPNWAELLKLPGLKLHLYGKKQPRVGRKMGHYCIVGEKVEDIL 367
                 6**********99999************************************99875 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   8.4e-08   0.00017       3     176 ..     114     273 ..     112     281 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 8.4e-08
                      HHTT--B--EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEESSSST.TTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--.ESEEEEEEEEETS CS
  Dala_Dala_lig_C   3 kaaGlpvvpyvvlekeeakeekkellekveeelgypvfVKpareGS.SvGvskveseeelkeaieeafkydekvlvEeai.egreievavlgne 94 
                      ++ G p+v y+v+++ e          +v +elg+p + K a++G    G    +s e+   a e+  k d   l E+ +    e+ v +  + 
       CCG92579.1 114 SKRGFPTVSYKVVNRPEELG-------SVAAELGFPSILKTAQLGYdGKGQVSLSSIEDCFLAWENIGKPDVA-LLEKRVeLLAEFSVIIGRDH 199
                      56677777777776655433.......4578888888888888885256777777888888888888777754.56777744567766444433 PP

                      SCEEEEEEEEE-SSSSS-HHHHHC..TT-E.EESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS- CS
  Dala_Dala_lig_C  95 klevsevgeivvkkgfydyeakysd.dkaq.levpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlP 176
                                 ++ +f+ +   + +    +   +p  l k  e++  e+a+++ +aldl Gl  v fflte+++i++nE+ + P
       CCG92579.1 200 ----------KKNVSFFPIPRNFHKkGILDfTIIPSGLGKRLEKEAMEIAFEIASALDLIGLLAVEFFLTENEDILVNELAPRP 273
                      ..........333344444444422122221469*********************************************98877 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.8e-06     0.014      34      73 ..       5      44 ..       1      78 [. 0.69

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.8e-06
                  GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C 34 lsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73
                  l g  +Gi+G G++G+ +a  ++ +g  v++yd+ +   +
    CCG92579.1  5 LPGAVIGILGGGQLGRMAAMEARRLGYGVVIYDPDPFCPA 44
                  56889****************************9875333 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.6e-05     0.072       6     179 ..     110     272 ..     105     287 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.6e-05
                  HHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETT.CCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEEE CS
  CPSase_L_D2   6 kealkkinvpvvpssaapvetleealaiakeigyPviikaaf.glGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrD 102
                  ke l+k + p+v  +   v+  ee  ++a+e+g+P i+k+a  g  GkG   ++  + +++ + +  +  k     +  l+ek ++   e  v + rD
   CCG92579.1 110 KEFLSKRGFPTVSYKV--VNRPEELGSVAAELGFPSILKTAQlGYDGKGQ--VS-LSSIEDCFLAWENIGK----PDVALLEKRVELLAEFSVIIGRD 198
                  6666677777775444..5999*****************87424556665..43.3445555544444332....456699*******99999999** PP

                  TTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS CS
  CPSase_L_D2 103 akgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtR 179
                  +k nv       n+ +    +  ++ Ps  L ++  ++  e a +++++++++g   vef l + ++++ v E+ +R
   CCG92579.1 199 HKKNVSFFPIPRNFHKKGILDF-TIIPS-GLGKRLEKEAMEIAFEIASALDLIGLLAVEFFLTE-NEDILVNELAPR 272
                  *999988887777776655553.55687.56777777777899999999999999999999997.999999999888 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.4e-05      0.13       7      64 ..     110     167 ..     105     219 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.4e-05
                 HHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-G.GGT-EEEESSHHHHH CS
      GARS_A   7 kdllkkagiptaeyeaftdpeeakeyieeatakalVvKadgla.agKgvivakseeeal 64 
                 k++l+k g pt +y++++ pee+ ++  e++++  ++K + l   gKg +  +s e+ +
  CCG92579.1 110 KEFLSKRGFPTVSYKVVNRPEELGSVAAELGFPS-ILKTAQLGyDGKGQVSLSSIEDCF 167
                 99********************************.999999973588877666666655 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     6e-05      0.12      29      60 ..       8      39 ..       1      44 [. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6e-05
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDvr 60
                 a + ++GgG  G  A+  a++lg  V+++D +
   CCG92579.1  8 AVIGILGGGQLGRMAAMEARRLGYGVVIYDPD 39
                 4556*************************976 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.4e-05      0.19      15      55 ..     109     149 ..     104     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.4e-05
  ATP-grasp_5  15 akelleaygipvvetrlassaeeaveaaeeigypvvlKivs 55 
                   ke l+  g+p+v  ++++ +ee  ++a+e+g+p  lK + 
   CCG92579.1 109 EKEFLSKRGFPTVSYKVVNRPEELGSVAAELGFPSILKTAQ 149
                  5899**********************************875 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00042      0.83       3      35 ..      12      72 ..      10     246 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00042
                EE--STTHHHHHHHHHHHTEEEEEEES-GGGG............................- CS
      XdhC_C  3 ifGaghvaqalarlaaalgfrvtvvdpreefa............................t 35
                i+G+g+ ++  a  a++lg+ v+++dp++                                
  CCG92579.1 12 ILGGGQLGRMAAMEARRLGYGVVIYDPDPFCPaaaiadkhwiggyddidklmdfaaaadvL 72
                89**************************953334555555555555444433333333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2623.51
//
Query:       CCG92580.1  [L=167]
Description: phosphoribosylaminoimidazole carboxylase, mutase subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-62  208.6   0.1    3.4e-62  208.4   0.1    1.0  1  AIRC      AIR carboxylase


Domain annotation for each model (and alignments):
>> AIRC  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.4   0.1   1.9e-66   3.4e-62       2     147 ..      13     160 ..      12     161 .. 0.98

  Alignments for each domain:
  == domain 1  score: 208.4 bits;  conditional E-value: 1.9e-66
                 EEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHCHTTTEEEEEEEEESS--HHHHHHHHSSS-EEEEEE--STTCCHHHHHHHH CS
        AIRC   2 VgiimGSdsDlevmkkaaeilkelgveyevrvvSahrtpeelleyaeeaeerglkviIagAGgaahLpgvvaslttlPVigvPvkskalkgldsllSiv 100
                 Vg++mGS+sD+++mk+a++il+e++v++e ++vSahrtpe l +y  +a++rg++viIagAGgaahLpg++as+t lPV+gvP++sk l+g+dsllSiv
  CCG92580.1  13 VGVVMGSRSDWQTMKAAVDILEEFSVRCEKKIVSAHRTPELLRTYGLSAAKRGIRVIIAGAGGAAHLPGMIASYTRLPVLGVPIESKVLRGVDSLLSIV 111
                 9************************************************************************************************** PP

                 T--TTS--EE-SST..HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHH CS
        AIRC 101 qmPsgvpvatvaig..kaknAallAaqilalkdeelaekleeyreelke 147
                 qmP g+pv ++aig  +aknAallA++ilal+d++laekle++r+e+++
  CCG92580.1 112 QMPFGIPVGCLAIGesGAKNAALLAVSILALEDKQLAEKLEAFRAEQTR 160
                 **************999***************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1222.97
//
Query:       CCG92581.1  [L=197]
Description: Phosphopantothenoylcysteine synthetase/decarboxylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-42  143.2   0.0    6.3e-42  143.0   0.0    1.0  1  Flavoprotein  Flavoprotein
  ------ inclusion threshold ------
       0.19   10.8   0.0       0.27   10.3   0.0    1.2  1  DUF1719       Domain of unknown function (DUF1719)


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.0   0.0     7e-46   6.3e-42       2     157 ..      11     184 ..      10     185 .. 0.95

  Alignments for each domain:
  == domain 1  score: 143.0 bits;  conditional E-value: 7e-46
                   EEEEEE-SSCGGGCHHHHHHHHHHTTEEEEEEESCHHHHCCHHGGS.................TCSSHHHHHHCTTESEEEEEEEEHHHHHHHHTT- CS
  Flavoprotein   2 killgiTGsvaaikalellekLkkegievqvvltkaAkkfiskeklklaa.............redpilhielrrwadllviaPasantlakianGi 85 
                    i+lg++Gs+aa+ a+el + L keg+ v+ vlt+aA++fi++ +++  +              +++ lhiel+++a l++ aPa+an++a  a+G+
    CCG92581.1  11 SIVLGVSGSIAAFRAVELASVLSKEGYMVDAVLTPAATQFIKPLSFECLThrkaytdemqenlLNGRPLHIELAQKAGLILLAPATANIIAEYALGL 107
                   59****************************************66555555999**********9999****************************** PP

                   -SSHHHHHHHTHCCTTEEEEE.--HHCCTCSTCHHHHHHH.HT.....................GHHHHHHHHHHCHH CS
  Flavoprotein  86 adnlltlilratakkpiliaPamnpamyenpqtlknlekl.eegvtvikPse.....gdigkgkmaeieeivgkildk 157
                   a nllt++l+at  +p++iaPamn +m+++p++++n+++l ++gv++i+P+e     gd+g+g+++ +eei  ki++k
    CCG92581.1 108 APNLLTSLLLATV-APVWIAPAMNVQMWRHPAVQQNVQTLkQRGVEFIGPEEgelacGDYGMGRLWPVEEICLKIMKK 184
                   *********8866.9*************************66*********99*******************999886 PP

>> DUF1719  Domain of unknown function (DUF1719)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   3.1e-05      0.27      42      89 ..      46      93 ..      42     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.1e-05
     DUF1719 42 gAseFlrfvelGgtprrylffdplirhLlaGkeleyklvqgsklllfl 89
                 A++F++ + + +  +r+   d + ++Ll+G+ l+ +l q+  l l++
  CCG92581.1 46 AATQFIKPLSFECLTHRKAYTDEMQENLLNGRPLHIELAQKAGLILLA 93
                699***********************************9988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1756.63
//
Query:       CCG92582.1  [L=207]
Description: Guanylate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-44  151.4   0.0    2.4e-44  151.2   0.0    1.0  1  Guanylate_kin  Guanylate kinase
    7.8e-05   22.9   0.0    0.00023   21.4   0.0    1.7  1  AAA_33         AAA domain
    0.00037   21.0   1.6      0.003   18.1   1.6    2.4  1  AAA_18         AAA domain
     0.0049   16.6   0.0       0.67    9.7   0.0    2.3  2  AAA_29         P-loop containing region of AAA domain
      0.005   17.1   0.0     0.0078   16.5   0.0    1.6  1  AAA_22         AAA domain
  ------ inclusion threshold ------
      0.027   14.0   0.4       0.23   11.0   0.1    2.3  2  AAA_25         AAA domain
       0.12   12.4   0.0       0.24   11.5   0.0    1.8  1  MMR_HSR1       50S ribosome-binding GTPase
       0.13   12.1   0.9         17    5.2   0.0    2.7  3  dNK            Deoxynucleoside kinase
       0.14   12.6   0.1       0.28   11.5   0.1    1.8  1  AAA_16         AAA ATPase domain
       0.15   11.8   0.0       0.24   11.1   0.0    1.5  1  AAA_24         AAA domain
       0.18   12.3   1.2       0.65   10.5   0.0    2.2  2  AAA_23         AAA domain


Domain annotation for each model (and alignments):
>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2   0.0   1.5e-47   2.4e-44       5     181 ..      12     192 ..       8     193 .. 0.93

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 1.5e-47
                    EEEESTTTSSHHHHHHHHHHHSTTTEEE--EEESS---TTS-TTTSEEE--HHHHHHHHHTTTEEEEEEETTEEEEEEHHHHHHHHHTTSEEEEE- CS
  Guanylate_kin   5 vvlvgpsgaGksslkkaLlselpekfgvsvshtTrdprkgevdGkdYyFvskeemekdiskneflEaaefsgnlygtsveaieevlekgkiviLDv 100
                     v+++psgaGks+l  +L   ++  f +s+s tTr+pr gev+G+dY+F+++ee+ ++ s++eflE+a+++g++ygt ++++   l++g +v+LD+
     CCG92582.1  12 FVISAPSGAGKSTLCTNLR--KSPDFIFSISCTTRPPRVGEVNGEDYFFLTEEEFLQKLSAQEFLEHAKVHGHYYGTLKSTVIDALKNGTDVLLDI 105
                    79**************984..455799********************************************************************* PP

                    -CHHHHHHHHT.....TTTEEEEEEEESSHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHGGG.CSSEEEEESSHHHHHHHHHHHHHH CS
  Guanylate_kin 101 diqavkqlrka.....elspiivFikppslkelqrrlksrgkeqeeklakrlaaaekelqey.efdvvivnddleealkklkellea 181
                    d+q+++q+r+      + + + vFi pp+ +el+rrl++rg+e+ee+la rl+aa++e++   ef + i   ++ee l+k + +++a
     CCG92582.1 106 DVQGARQIRQSndpllRNALVDVFIMPPTIEELERRLRKRGTETEEELAIRLKAAREEMKLWpEFKYTILSGSMEEDLTKFRAIMRA 192
                    *********98432212345679*********************************************************9999987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.4e-07   0.00023       7     125 ..      17     152 ..      11     166 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.4e-07
      AAA_33   7 lpGsGKstlaerl..............lkklg..........avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnls 81 
                 ++G+GKstl ++l                  +          +++l++ +++++l +   q   + ++v  + y++l+ ++ +al+ g +v+ld     
  CCG92582.1  17 PSGAGKSTLCTNLrkspdfifsiscttR---PprvgevngedYFFLTEEEFLQKLSA---QEFLEHAKVHGHYYGTLKSTVIDALKNGTDVLLDIDVQG 109
                 79**********9444444444443330...13343333455666666667777775...444567889999*********************988888 PP

      AAA_33  82 r.rerarflklarrlgvpvrivvvetdeetlkeRlakRaangddr 125
                 + + r+  + l+r  ++ v + ++ +  e+l++Rl+kR  +++++
  CCG92582.1 110 ArQIRQSNDPLLR--NALVDVFIMPPTIEELERRLRKRGTETEEE 152
                 7344567788888..8899********************987654 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.6   1.8e-06     0.003       3     119 ..      14     151 ..      13     167 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.8e-06
      AAA_18   3 ltGtpGvGKttlakeLskrlgf.................gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghla 84 
                 ++ ++G+GK+tl+ +L+k+  f                 g+ + ++  e+ l     +e + e+ ++  ++   l +++  +   l +g ++++d    
  CCG92582.1  14 ISAPSGAGKSTLCTNLRKSPDFifsiscttrpprvgevnGEDYFFLTEEEFLQKLSAQE-FLEHAKVHGHYYGTLKSTVIDA---LKNGTDVLLD---- 104
                 77899***********9998775555556665555544444444444444444444444.5555555555555555555554...3344444333.... PP

      AAA_18  85 eleseaakdikk..................vvLtasp.eelleRlekRgyeeak 119
                        +d ++                  v++  ++ eel +Rl+kRg+e+ +
  CCG92582.1 105 -------IDVQGarqirqsndpllrnalvdVFIMPPTiEELERRLRKRGTETEE 151
                 .......3333333333333455668899888888888***********88765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00041      0.67      20      38 ..       6      25 ..       2      27 .. 0.84
   2 ?    4.4   0.0      0.02        32      35      43 ..      88      96 ..      82      98 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00041
      AAA_29 20 dlkg.atlltGpsGsGKSTl 38
                +++g  ++++ psG+GKSTl
  CCG92582.1  6 RREGiLFVISAPSGAGKSTL 25
                56777789999********9 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.02
      AAA_29 35 KSTllDAiq 43
                KST++DA++
  CCG92582.1 88 KSTVIDALK 96
                *******86 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.8e-06    0.0078       8      61 ..      12      69 ..       6     166 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.8e-06
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee......erpevvfvtlpsst..sskdllrell 61
                 v+ ++sG+GK+tl+ +l+++ d  +          ++p+v +v+       + +++l++l 
  CCG92582.1 12 FVISAPSGAGKSTLCTNLRKSPDF-I---FsiscttRPPRVGEVNGEDYFflTEEEFLQKLS 69
                5889***************99752.2...122356444444466655555555555555554 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00014      0.23      30      53 ..       6      29 ..       3     146 .. 0.93
   2 ?    1.4   0.1      0.12     2e+02      80     103 ..     148     171 ..     136     202 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
      AAA_25 30 lpagelallaGapgtGKttlaldl 53
                +++g l ++ +++g+GK+tl+++l
  CCG92582.1  6 RREGILFVISAPSGAGKSTLCTNL 29
                5789999**************987 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.12
      AAA_25  80 EdsedelrrRlravgeal..rddarl 103
                 E  e+el+ Rl+a++e++    ++  
  CCG92582.1 148 ET-EEELAIRLKAAREEMklW-PEFK 171
                 44.459999999999999431.3333 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00015      0.24       8      47 ..      18      55 ..      12     153 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
                TTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE CS
    MMR_HSR1  8 pNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke 47
                + +GKStL   l ++   + ++  tTr ++ g+v+  g++
  CCG92582.1 18 SGAGKSTLCTNLRKSPDFIFSISCTTRPPRVGEVN--GED 55
                679************999999************99..444 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0      0.01        17       2      24 ..      13      35 ..      12      41 .. 0.84
   2 ?   -0.8   0.0      0.71   1.2e+03     134     169 ..      62      97 ..      51     127 .. 0.65
   3 ?    4.4   0.2     0.018        29     131     152 ..     133     154 ..     111     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.01
                EEEESTTSSHHHHHHHHHCCSTC CS
         dNK  2 vveGnIgaGKstlvklLskklgv 24
                v++ + gaGKstl + L+k  ++
  CCG92582.1 13 VISAPSGAGKSTLCTNLRKSPDF 35
                677788***********998765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.71
                 HHHHHHHHHCTTCCCTTS-HHHHHHHHHHHHHHHTS CS
         dNK 134 etclerikkRgreeekkieldYlekLhekyeewlkk 169
                 e+ l+++  ++  e +k++  Y+ +L++   ++lk+
  CCG92582.1  62 EEFLQKLSAQEFLEHAKVHGHYYGTLKSTVIDALKN 97 
                 556666666666666666666666666554444433 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.018
                 --HHHHHHHHHHCTTCCCTTS- CS
         dNK 131 asletclerikkRgreeekkie 152
                  ++e++++r++kRg e e++  
  CCG92582.1 133 PTIEELERRLRKRGTETEEELA 154
                 5689***********9998544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00017      0.28      27      47 ..      12      32 ..       5     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
      AAA_16 27 vllsGesGvGKsslvrellra 47
                 ++s +sG GKs+l + l+++
  CCG92582.1 12 FVISAPSGAGKSTLCTNLRKS 32
                6799*************9983 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00015      0.24       5      28 ..      12      37 ..       8     118 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
      AAA_24  5 iliyGpsgiGKTtlakel..gpkplf 28
                ++i +psg+GK+tl+++l   p+++f
  CCG92582.1 12 FVISAPSGAGKSTLCTNLrkSPDFIF 37
                6899**************66444444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0004      0.65      21      35 ..      11      25 ..       4      30 .. 0.88
   2 ?   -1.2   0.0       1.5   2.5e+03      32      40 ..      88      96 ..      83      99 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0004
      AAA_23 21 ltlItGpNGaGKTTi 35
                l++I+ p GaGK+T+
  CCG92582.1 11 LFVISAPSGAGKSTL 25
                8*************8 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.5
      AAA_23 32 KTTildAik 40
                K+T++dA+k
  CCG92582.1 88 KSTVIDALK 96
                9******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 1437.39
//
Query:       CCG92583.1  [L=48]
Description: hypothetical protein MFUM_700137 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 344.38
//
Query:       CCG92584.1  [L=406]
Description: tryptophan synthase beta chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-48  164.6   0.3    3.9e-48  164.4   0.3    1.1  1  PALP      Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
       0.13   12.5   0.1       0.28   11.5   0.1    1.5  1  Gmad2     Immunoglobulin-like domain of bacterial spore germi


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.4   0.3   4.3e-52   3.9e-48       3     294 .]      61     387 ..      59     387 .. 0.83

  Alignments for each domain:
  == domain 1  score: 164.4 bits;  conditional E-value: 4.3e-52
                 GCSSS--EEEECCTCCCCCCE.EEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-...HHHHHHH CS
        PALP   3 lgigpTPlvrlprlskelgvp.lflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadas...pekvall 97 
                 ++ +pTPl  ++rls  lg + ++lK+E+l +tg++K++     ++ +k+  +++ v+e+++G+hg+a+A a+al+G++++i++ + +    + +v ++
  CCG92584.1  61 YAGRPTPLYYAKRLSSMLGDKkVYLKREDLLHTGAHKINNTLGQVLLAKRMGKKRIVAETGAGQHGVATATACALFGMECRIYMGEVDMerqALNVTRM 159
                 5789**************************************99999888879999999999*********************98888755569***** PP

                 HHTT-EEEEECCHHHHHHHHHHHHHHH......STTCEE--TTT.SHH..HHHH.HHTHHHHHH....HHTTTTEEEEEEE-SSSHHHHHHHHHHHHHS CS
        PALP  98 rllGaevvevggdydeavaaaaelaae......gegaylvsqfd.npt..vieg.ygtiglEil....eqlggkpdavvvpvGgGgliaGiaaglkerr 182
                 ++lGaev  v  + ++ ++a++e  ++      +++++l s  + +p   ++   ++ ig E      +q g+ pd+ +++vGgG+++ G+  g+ + +
  CCG92584.1 160 QMLGAEVYPVRVGQKTLKEAINEGMRDwvinlrTTHYVLGSALGpHPFpmIVRDfQKVIGEECRaqffKQEGRLPDVAIACVGGGSNAIGFFYGFLS-D 257
                 **********555555555555555555555664444444444463334477777********867778888************************7.9 PP

                 TT-EEEEEEECTTCGGTTCCS..S.SS..B.....................SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB CS
        PALP 183 pdvrvigvepegsdalarslragrrvtvpvs....................dtiadglavgspselafelldrlvdeivtvsdeealeamrllarregi 261
                 p+vr+igve+ g+    + + a r  + + +                    ++   gl+ +++++++  l d l  e+  vsd+eale+  ll ++egi
  CCG92584.1 258 PQVRLIGVEAGGNGEALGEH-AARFASGKLGifhgtktfvlqdengqiastHSVSAGLDYPAVGPEHAFLRDHLRVEYTKVSDAEALEGFFLLSQTEGI 355
                 **********9555444444.2222222222567778888888888888889999999999999999999999999*********************** PP

                 -B-HHHHHHHHHHHHHHHHCCTTCEEEEEEE-B CS
        PALP 262 vvepssaaalaalklreagelkegdrvvviltg 294
                 ++   sa+a+a + l+ ++el++g+ v v l+g
  CCG92584.1 356 LPALESAHAVAYC-LKLCRELPKGAIVAVNLSG 387
                 *************.**********888888876 PP

>> Gmad2  Immunoglobulin-like domain of bacterial spore germination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.1e-05      0.28      19      57 ..     282     320 ..     265     324 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.1e-05
       Gmad2  19 vsGkarvFEatvnvrlrddagevlaegfvtAdegapkfg 57 
                 +sGk   F +t ++ l+d++g+++++++v+A+  +p+ g
  CCG92584.1 282 ASGKLGIFHGTKTFVLQDENGQIASTHSVSAGLDYPAVG 320
                 589*****************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2998.03
//
Query:       CCG92585.1  [L=217]
Description: N-(5'-phosphoribosyl)anthranilate isomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-43  146.6   0.0    8.2e-43  146.4   0.0    1.0  1  PRAI      N-(5'phosphoribosyl)anthranilate (PRA) isomerase
  ------ inclusion threshold ------
      0.021   13.8   0.0        2.6    7.0   0.0    2.1  2  FMN_dh    FMN-dependent dehydrogenase
      0.045   13.5   0.0      0.083   12.7   0.0    1.4  1  GPW_gp25  Gene 25-like lysozyme
       0.08   12.3   0.0       0.17   11.2   0.0    1.5  1  TMP-TENI  Thiamine monophosphate synthase


Domain annotation for each model (and alignments):
>> PRAI  N-(5'phosphoribosyl)anthranilate (PRA) isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.4   0.0   1.8e-46   8.2e-43       1     193 [.      14     208 ..      14     209 .. 0.91

  Alignments for each domain:
  == domain 1  score: 146.4 bits;  conditional E-value: 1.8e-46
                 TCE----SHHHHHHHHHHTSSEEEEE--TTBTTB--HHHHHHHCCCS--E..EEEEESSS-HHHHHHHHHHCTECEEEE-CGG.-HHHHHHHHHHS-TT CS
        PRAI   1 akicgltrasdvkaavkagadelglifaesskrevseeqaqellekvpak..lVGVfvNqpieevlriaqelgldvvQLHGdedeqeyeellktelpvi 97 
                 +kicg+t+ +d+  av+ gad+lg++f ++s+r  +  +a++++ + p++   V+V vN + e+++++ +el +d+ QLHG+ed+++   + +   ++i
  CCG92585.1  14 IKICGITSLEDALMAVEFGADALGFVFYPKSPRYLTVASAAKVMLRLPPRivKVAVVVNPSQEQIEALEKELPIDLWQLHGEEDSKADCWQCR---NII 109
                 59**********************************************998889*****************************5544444444...899 PP

                 SEEEEEEE-S.SS--S-SSTT-SEEEEE...SSS-SSSXXXXGGGGTTSXX...TTEEEESSXXTTTHHHHHT.TXXSEEEEXGGGEEE.TEEXHHHHH CS
        PRAI  98 kalkvaesvd.evkearradhvdllllD...sgaGGtGelldwsliskllks..lkviLAGGLtpeNvaeaiklegvlgvDvssGVEtn.GvkDlekir 189
                 kal+++   + +++  ++  h  ++llD   ++ GG+G  +dw+  + l+++  +++iLAGGL+peN+++a+   +++gvDvssGVE++ G+kD++k++
  CCG92585.1 110 KALRPPF--ErKMDLWEEIVH--AFLLDsksEQWGGSGIPFDWKEAAALQRHsqKPFILAGGLNPENIQKALLEVKPFGVDVSSGVESYpGKKDKKKLS 204
                 9999999..434666666666..9****887778**********9999887788*******************9************************* PP

                 HHHH CS
        PRAI 190 kfvq 193
                 +f++
  CCG92585.1 205 EFIE 208
                 **96 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0   0.00059       2.6     217     240 ..      12      35 ..       3      37 .. 0.81
   2 ?    5.1   0.0    0.0021       9.4     202     234 ..     145     177 ..      68     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00059
                 SEEEEEEE-SHHHHHHHHHTTESE CS
      FMN_dh 217 lplvvKGvltaedakraveaGvdg 240
                 + + + G+ + eda +ave G+d+
  CCG92585.1  12 VWIKICGITSLEDALMAVEFGADA 35 
                 444455*****************8 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0021
                 C--HHHHHHHHHHHSSEEEEEEE-SHHHHHHHH CS
      FMN_dh 202 sltwddikwlreqtklplvvKGvltaedakrav 234
                  ++w++ + l+++ + p+++ G l++e++++a+
  CCG92585.1 145 PFDWKEAAALQRHSQKPFILAGGLNPENIQKAL 177
                 579*************************99985 PP

>> GPW_gp25  Gene 25-like lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.8e-05     0.083      18      83 ..      21      86 ..      19      92 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.8e-05
                BTTSSTT-TT-SBGGGHHHHCS--CHHHHHHHHHHHHHHHH-TTEEEEEEEE.......CCCCTEEE CS
    GPW_gp25 18 fpgervsvlnyGlpllallfaslsedreriareireailrfEpRirlvsveveveeed.edargrlr 83
                  + + + +++G ++l  +f ++s  r    ++  ++ lr  pRi +v+v v++++e+ e+ +++l 
  CCG92585.1 21 SLEDALMAVEFGADALGFVFYPKS-PRYLTVASAAKVMLRLPPRIVKVAVVVNPSQEQiEALEKELP 86
                5677889****************9.9999999999******************99999766666555 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.8e-05      0.17     136     169 ..     145     179 ..     141     191 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.8e-05
    TMP-TENI 136 plgleglkelaealeiPvvaiGGitlenvaevl.e 169
                 p +++ +++l++++++P++  GG+++en++++l e
  CCG92585.1 145 PFDWKEAAALQRHSQKPFILAGGLNPENIQKALlE 179
                 6789999**********************987634 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1563.18
//
Query:       CCG92586.1  [L=275]
Description: Indole-3-glycerol phosphate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-84  281.3   0.0    6.3e-84  281.1   0.0    1.0  1  IGPS             Indole-3-glycerol phosphate synthase
      1e-05   25.4   0.0    1.6e-05   24.7   0.0    1.3  1  QRPTase_C        Quinolinate phosphoribosyl transferase, C-te
  ------ inclusion threshold ------
      0.011   15.2   0.0        1.3    8.4   0.0    2.9  3  His_biosynth     Histidine biosynthesis protein
      0.042   14.2   0.1      0.083   13.3   0.1    1.4  1  PDZ              PDZ domain
      0.057   12.4   0.0       0.22   10.5   0.0    1.9  1  FMN_dh           FMN-dependent dehydrogenase
       0.11   12.5   0.0       0.18   11.8   0.0    1.3  1  Glyco_trans_4_2  Glycosyl transferase 4-like


Domain annotation for each model (and alignments):
>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.1   0.0   2.1e-87   6.3e-84       1     252 [.       8     257 ..       8     259 .. 0.96

  Alignments for each domain:
  == domain 1  score: 281.1 bits;  conditional E-value: 2.1e-87
                 HHHCHHHHHHHHHHHHCCS-GGCCCCG...-SS-SS-HHHHCHCHTTS-EEEEEE-SEETTTEESBSS--HHHHHHHHTTT.-SEEEEE--CCCC---C CS
        IGPS   1 lekivaekkeevaeakkrqsladleaav.klakpkrsfaeaLresekklaliaEvKkaSPskgliredfdpaeiAkkyeeagAsaiSVLteekyFqGsl 98 
                 le+i+a+kkee+++    q  a++e+++ ++  +k  f  aL + +k+l+liaE K+aSPs g i+   dp+ +A ky+++gA+++SVLt+ k+F+Gsl
  CCG92586.1   8 LETIIASKKEEIKKLLPLQ--AKMEKELaNRPFSKPTFSSALVH-RKRLGLIAEFKRASPSAGPIAPTKDPVTQAIKYRKGGADCLSVLTDSKFFNGSL 103
                 789*********9988777..477776658999*********99.9***************************************************** PP

                 CHHHHHHHH-SS-EEEES---SHHHHHHHHHCT-SEEEEECCCS-HHHHHHHHHHHCCTT-EEEEEESSHHHHHHHHHTT-SEEEEESEETTTTEE-CH CS
        IGPS  99 edLrevrqavslpvlrKdFiideyqieearalgadaiLLivkvledeeleelaeaakslglevLvEvhdeeeleralklgakiiGvNnRnLktlevdln 197
                 ed++++rq+v lp+lrKdFii e+q+ e+ ++gada LLiv++l  +++ +l++  ++lg+evLvEvhdeee+++al++ga+iiG+NnR+L+t++vdl 
  CCG92586.1 104 EDFKKIRQKVTLPMLRKDFIIHEVQVLESLLIGADALLLIVAALPWKHFLRLYSFCRKLGMEVLVEVHDEEEIDKALEAGAEIIGINNRDLRTFSVDLR 202
                 *************************************************************************************************** PP

                 HHHHHCHCC-TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTHHHHHH CS
        IGPS 198 tteeLaklvpkdvllvaeSGiktredveklkeegvnafLvGeslmrqedvekair 252
                 tt++L + +p++ ++v+eSGi+t++d+++l+  gv+a+L+Ge lmrqe+ e  i 
  CCG92586.1 203 TTRRLLPRIPENKIVVSESGIETSDDLSDLRIRGVDAVLIGEFLMRQENPETVIP 257
                 *************************************************998775 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.4e-09   1.6e-05      81     156 ..     164     244 ..     129     251 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.4e-09
                 SEEEEEESSHHHHHHHHHHT-SEEEEES--HHHHHHHHHHHHHHSTT.....SEEEEESS--TTTHHHHHCTT-SEEEECH CS
   QRPTase_C  81 vkievevesleeleevleaeadiimLDnfsveelkkaveelkeknkr.....vlievSGgvtlenveeyaksgvdvisvga 156
                 +++ vev+ +ee++++lea+a+ii + n +  ++   + ++++  +r     ++++ SG  t +++++++  gvd++ +g 
  CCG92586.1 164 MEVLVEVHDEEEIDKALEAGAEIIGINNRDLRTFSVDLRTTRRLLPRipenkIVVSESGIETSDDLSDLRIRGVDAVLIGE 244
                 4599*************************887777666666666666666679***********************99986 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.03        89      28      49 ..      72      93 ..      68     145 .. 0.85
   2 ?    2.1   0.0     0.038   1.1e+02      82     127 ..     170     219 ..     156     221 .. 0.78
   3 ?    8.4   0.0   0.00045       1.3     194     226 ..     217     249 ..     199     252 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.03
                  TTSHHHHHHHHHHHT-SEEEEE CS
  His_biosynth 28 agdpvelakryeeegadelhvv 49
                   +dpv +a +y++ gad l v+
    CCG92586.1 72 TKDPVTQAIKYRKGGADCLSVL 93
                  689**************99886 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.038
                   SSSHHHHHHHHHCT-SEEEESHHHHH-THH....HHHHHHHHCGGGEEEE CS
  His_biosynth  82 Irsledveelleagadkviigtaavknpel....ikelaekfgsqkivva 127
                   + + e+++++leaga+ + i+   ++  ++     ++l+ +++++kivv+
    CCG92586.1 170 VHDEEEIDKALEAGAEIIGINNRDLRTFSVdlrtTRRLLPRIPENKIVVS 219
                   678999**************998665433322338888888888888886 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00045
                   EEEESS--SHHHHHHHHHTTCSEEEESHHHHTT CS
  His_biosynth 194 viasGGvgsledlkelksegvdavivgsalyeg 226
                   v+   G+++ +dl +l+  gvdav++g+ l  +
    CCG92586.1 217 VVSESGIETSDDLSDLRIRGVDAVLIGEFLMRQ 249
                   4455799********************998765 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.8e-05     0.083      42      64 ..     177     200 ..     169     203 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-05
                 HT.SSTTEEEEEETTEETTTSHHH CS
         PDZ  42 dg.lkvGDkIlsvNgvdvenvshe 64 
                 d+ l++G +I+++N++d++++s++
  CCG92586.1 177 DKaLEAGAEIIGINNRDLRTFSVD 200
                 444*****************9987 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.3e-05      0.22     217     301 ..     164     244 ..      11     248 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.3e-05
                 SEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESH CS
      FMN_dh 217 lplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGR 301
                 ++++v +v ++e++++a+eaG+++i + N   R l++    +++  ++  +++++  v+  +Gi +  D       G davl+G 
  CCG92586.1 164 MEVLV-EVHDEEEIDKALEAGAEIIGINN---RDLRTFSVDLRTTRRLLPRIPENKIVVSESGIETSDDLSDLRIRGVDAVLIGE 244
                 44444.7999*******************...5566666666666666666676667999***********************95 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.9e-05      0.18       2      53 ..     141     192 ..     140     212 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.9e-05
  Glyco_trans_4_2   2 illlanlssvhtlrlakeLakrgyeVhvitpkkgakdeleaegihvhrlkvd 53 
                      +l++a+l++ h lrl ++ +k g+eV v   ++++ d+  ++g++++ ++++
       CCG92586.1 141 LLIVAALPWKHFLRLYSFCRKLGMEVLVEVHDEEEIDKALEAGAEIIGINNR 192
                      79******************************9999999999*****99844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2039.87
//
Query:       CCG92587.1  [L=642]
Description: TPR repeats containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-26   90.1   8.7    3.7e-09   36.0   0.3    6.7  5  TPR_2            Tetratricopeptide repeat
    7.8e-24   83.1  14.3    1.5e-08   34.1   2.3    4.9  4  TPR_11           TPR repeat
    5.5e-21   73.4   5.3    2.2e-05   24.5   0.1    5.1  4  TPR_17           Tetratricopeptide repeat
    7.9e-21   72.9  11.0    1.8e-09   37.0   0.4    6.1  6  TPR_1            Tetratricopeptide repeat
    1.7e-19   70.0   0.8    1.8e-11   44.4   0.3    4.1  3  TPR_19           Tetratricopeptide repeat
    8.5e-19   67.9   0.9      1e-10   42.1   0.4    5.3  5  TPR_16           Tetratricopeptide repeat
    1.4e-15   56.6  14.5    0.00063   20.4   0.5    7.1  6  TPR_14           Tetratricopeptide repeat
    7.6e-15   53.8   9.6    5.7e-07   29.3   0.1    5.6  4  TPR_8            Tetratricopeptide repeat
    1.2e-11   44.5   0.0    8.9e-07   29.0   0.0    3.0  2  TPR_9            Tetratricopeptide repeat
    1.4e-10   41.3   5.2      2e-06   28.0   0.4    3.9  3  TPR_12           Tetratricopeptide repeat
    5.3e-10   38.6   1.9      0.012   15.5   0.2    5.7  5  TPR_7            Tetratricopeptide repeat
    3.6e-08   33.5   9.6       0.21   12.3   0.2    6.6  5  TPR_6            Tetratricopeptide repeat
    2.3e-07   30.4   8.4    0.00035   20.3   1.1    5.4  4  TPR_10           Tetratricopeptide repeat
    1.9e-05   24.6   1.9      0.024   14.7   0.1    4.3  4  MIT              MIT (microtubule interacting and transport) 
    0.00017   21.8   0.3     0.0043   17.2   0.5    2.7  3  ANAPC3           Anaphase-promoting complex, cyclosome, subun
     0.0041   16.9   0.7      0.017   14.9   0.7    2.2  1  YfiO             Outer membrane lipoprotein
  ------ inclusion threshold ------
      0.018   14.9   0.7      0.018   14.9   0.7    4.1  4  GIT_CC           GIT coiled-coil Rho guanine nucleotide excha
      0.023   14.8   1.0       0.13   12.4   0.5    2.5  2  TPR_18           Tetratricopeptide repeat
      0.023   14.7   4.1       0.33   11.0   0.2    3.1  2  TPR_3            Tetratricopeptide repeat
      0.025   15.2   0.0       0.82   10.5   0.1    3.3  2  TPR_4            Tetratricopeptide repeat
      0.039   13.4   9.2        0.3   10.4   0.0    3.8  5  Coatomer_E       Coatomer epsilon subunit
      0.069   13.2  32.8      0.024   14.7  11.4    3.7  4  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
      0.075   13.4  22.1       0.23   11.8   0.8    5.6  5  TSC22            TSC-22/dip/bun family
       0.32   11.3  18.6        4.1    7.8   0.0    5.9  6  TPR_20           Tetratricopeptide repeat
       0.33   11.2  15.7       0.99    9.7   0.3    5.0  5  RILP             Rab interacting lysosomal protein
       0.36   10.8   6.8         13    5.7   2.4    3.2  3  EMP24_GP25L      emp24/gp25L/p24 family/GOLD
        0.4    9.7  28.3       0.58    9.2   6.1    2.4  2  Atg14            Vacuolar sorting 38 and autophagy-related su
        1.5    9.2  26.7          5    7.5   9.7    2.9  2  Fez1             Fez1
        2.1    8.3   4.7       0.69    9.8   0.3    2.4  3  Wzy_C_2          Virulence factor membrane-bound polymerase, 
        2.2    8.3   6.3        8.9    6.3   0.0    3.4  4  DUF4192          Domain of unknown function (DUF4192)
        2.3    7.7  16.7       0.33   10.5   3.0    3.7  3  Fzo_mitofusin    fzo-like conserved region
          3    6.3  10.3        5.9    5.3  10.3    1.5  1  FUSC             Fusaric acid resistance protein family
          6    6.3  24.2       0.18   11.3  15.0    2.7  3  Leu_zip          Leucine zipper
        8.7    6.9  40.8      0.066   13.7  12.4    4.4  4  APG6_N           Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   0.00015     0.077       8      33 ..     469     494 ..     464     495 .. 0.90
   2 !   36.0   0.3   6.9e-12   3.7e-09       2      34 .]     497     529 ..     496     529 .. 0.96
   3 !   17.2   0.0   7.3e-06    0.0038       2      34 .]     531     563 ..     530     563 .. 0.93
   4 !   19.8   0.1   1.1e-06   0.00057       4      34 .]     567     597 ..     564     597 .. 0.93
   5 ?    2.5   0.2      0.38     2e+02       3      29 ..     600     628 ..     598     630 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00015
       TPR_2   8 GlayyklgdyeeAleafekAleldPn 33 
                 +  ++  ++y+eA+e + + le  Pn
  CCG92587.1 469 ASTLFSEQHYQEAAEKYHQILEKFPN 494
                 6789999******************9 PP

  == domain 2  score: 36.0 bits;  conditional E-value: 6.9e-12
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                  a+ nlG +yy++g+++eA++a+ +Al+l+Pn+
  CCG92587.1 497 TAWANLGVIYYQQGQLKEAENALAQALKLNPND 529
                 59*****************************97 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 7.3e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                   +  lG +yy+ g ++ A+  + +A+ ++Pn+
  CCG92587.1 531 FSHSILGIVYYQEGLFDNAVTELTRAIVINPND 563
                 56889**************************97 PP

  == domain 4  score: 19.8 bits;  conditional E-value: 1.1e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                  ++lG a+ k+g  e A++ ++kAleldPn+
  CCG92587.1 567 RNYLGIACSKKGWQEAAEKELRKALELDPNY 597
                 589**************************96 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.38
       TPR_2   3 alynlGlayyklgdy..eeAleafekAle 29 
                 a++nl+ +y+ +  +  e A+++++ Al+
  CCG92587.1 600 AHFNLAVIYATQRPPakELAKRHYQDALS 628
                 67777777765542211446666666665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.3   5.8e-08   3.1e-05       4      42 .]     472     510 ..     469     510 .. 0.96
   2 !   34.1   2.3   2.9e-11   1.5e-08       2      42 .]     504     544 ..     503     544 .. 0.96
   3 !   26.5   0.0   7.3e-09   3.8e-06       3      42 .]     539     578 ..     537     578 .. 0.95
   4 !   26.9   0.4   5.5e-09   2.9e-06       6      41 ..     576     611 ..     573     611 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 5.8e-08
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 +++ + y eA e+Y + l+  P++++a+ nLG++yy+qG
  CCG92587.1 472 LFSEQHYQEAAEKYHQILEKFPNSVTAWANLGVIYYQQG 510
                 799999********************************9 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 2.9e-11
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                  +yy+qG+++eA +a+ +Alkl+P++a  ++ LG +yy+ G
  CCG92587.1 504 VIYYQQGQLKEAENALAQALKLNPNDAFSHSILGIVYYQEG 544
                 59************************************977 PP

  == domain 3  score: 26.5 bits;  conditional E-value: 7.3e-09
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 +yy+ G +++A++++ +A+ ++P+++   + LG a  k+G
  CCG92587.1 539 VYYQEGLFDNAVTELTRAIVINPNDPKTRNYLGIACSKKG 578
                 8*********************************988887 PP

  == domain 4  score: 26.9 bits;  conditional E-value: 5.5e-09
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 ++G  e+A ++++kAl+ldP++ +a++nL+++y+ q
  CCG92587.1 576 KKGWQEAAEKELRKALELDPNYGDAHFNLAVIYATQ 611
                 577789999************************875 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   4.1e-08   2.2e-05       5      33 ..     488     516 ..     478     517 .. 0.94
   2 !    8.9   0.1     0.004       2.1       4      28 ..     521     545 ..     518     550 .. 0.85
   3 !   15.6   0.0   2.8e-05     0.015       3      33 ..     554     584 ..     552     585 .. 0.92
   4 !   23.1   0.1   1.2e-07   6.3e-05       2      25 ..     587     610 ..     586     628 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 4.1e-08
      TPR_17   5 aleldPnnadaynnLAelllknGdlmtAr 33 
                  le+ Pn++ a+ nL+++++++G+l++A+
  CCG92587.1 488 ILEKFPNSVTAWANLGVIYYQQGQLKEAE 516
                 6999***********************97 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.004
      TPR_17   4 kaleldPnnadaynnLAelllknGd 28 
                 +al+l+Pn+a ++  L+ ++++ G 
  CCG92587.1 521 QALKLNPNDAFSHSILGIVYYQEGL 545
                 89*****************998775 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 2.8e-05
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtAr 33 
                 ++a+ ++Pn+++  n+L+ + +k+G  + A+
  CCG92587.1 554 TRAIVINPNDPKTRNYLGIACSKKGWQEAAE 584
                 79***********************999997 PP

  == domain 4  score: 23.1 bits;  conditional E-value: 1.2e-07
      TPR_17   2 ylkaleldPnnadaynnLAelllk 25 
                 ++kaleldPn+ da++nLA++++ 
  CCG92587.1 587 LRKALELDPNYGDAHFNLAVIYAT 610
                 579*******************93 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1      0.05        26      10      33 ..     471     494 ..     468     495 .. 0.89
   2 !   37.0   0.4   3.3e-12   1.8e-09       3      34 .]     498     529 ..     496     529 .. 0.96
   3 !   16.3   0.0   1.2e-05    0.0063       3      34 .]     532     563 ..     530     563 .. 0.92
   4 !   13.6   0.2   8.4e-05     0.044       2      34 .]     565     597 ..     564     597 .. 0.94
   5 ?    2.9   0.0       0.2   1.1e+02       2      14 ..     599     611 ..     598     612 .. 0.87
   6 ?   -0.9   0.1       3.3   1.7e+03      18      30 ..     617     629 ..     616     629 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.05
                 HHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  10 ayfklgkydeAleyyekALelnPn 33 
                 ++f+ + y+eA e y + Le  Pn
  CCG92587.1 471 TLFSEQHYQEAAEKYHQILEKFPN 494
                 6889999*************9998 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 3.3e-12
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 a+ nlG++y+++g+++eA+ +  +AL+lnPn+
  CCG92587.1 498 AWANLGVIYYQQGQLKEAENALAQALKLNPND 529
                 9*****************************97 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 ++  lG +y++ g +d A+    +A+ +nPn+
  CCG92587.1 532 SHSILGIVYYQEGLFDNAVTELTRAIVINPND 563
                 57779*************************97 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 8.4e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 k+ + lG a+ k+g  + A++  +kALel+Pn+
  CCG92587.1 565 KTRNYLGIACSKKGWQEAAEKELRKALELDPNY 597
                 67899**************************97 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHT CS
       TPR_1   2 kalynlGnayfkl 14 
                 +a++nl+++y  +
  CCG92587.1 599 DAHFNLAVIYATQ 611
                 79********865 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 3.3
                 HHHHHHHHHHHHH CS
       TPR_1  18 deAleyyekALel 30 
                 + A  +y+ AL+l
  CCG92587.1 617 ELAKRHYQDALSL 629
                 67999*****986 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.3   3.4e-14   1.8e-11       1      59 [.     472     530 ..     472     538 .. 0.94
   2 !   19.5   0.0     2e-06    0.0011       2      58 ..     541     597 ..     540     605 .. 0.93
   3 !   12.2   0.2   0.00037      0.19       9      36 ..     582     609 ..     580     612 .. 0.91

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 3.4e-14
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdda 59 
                 l+ e+ y+eA++ + q+l++ p++  a+++L  +++++gql+eAe++L+++++ +p+da
  CCG92587.1 472 LFSEQHYQEAAEKYHQILEKFPNSVTAWANLGVIYYQQGQLKEAENALAQALKLNPNDA 530
                 67899****************************************************86 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 2e-06
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 ++eg +++A+  l++a+  +p+++  r +L +a+ + g  ++Ae+ L +++e dp+ 
  CCG92587.1 541 YQEGLFDNAVTELTRAIVINPNDPKTRNYLGIACSKKGWQEAAEKELRKALELDPNY 597
                 68999**************************************************94 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00037
      TPR_19   9 eAlalleqalqedpknaearllLAeall 36 
                 +A + l++al+ dp++++a  +LA ++ 
  CCG92587.1 582 AAEKELRKALELDPNYGDAHFNLAVIYA 609
                 79999********************996 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       5.5   2.9e+03      35      51 ..     178     194 ..     172     194 .. 0.87
   2 ?   -0.6   0.9       4.1   2.2e+03      33      58 ..     263     289 ..     228     293 .. 0.66
   3 !   42.1   0.4   1.9e-13     1e-10       3      67 ..     468     529 ..     466     530 .. 0.89
   4 !   32.8   0.0   1.5e-10   8.1e-08       6      68 .]     505     564 ..     505     564 .. 0.90
   5 !   13.5   0.9   0.00017     0.089      14      48 ..     581     612 ..     581     629 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 5.5
      TPR_16  35 eAllllgdaalrqgrla 51 
                 eA +l++++a+ q++la
  CCG92587.1 178 EANMLRNRLAATQKELA 194
                 899**********9986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 4.1
      TPR_16  33 aaeAllllgdaalrqgrlaeAa.alyr 58 
                 +  A+ l++++  +q+ lae a +l +
  CCG92587.1 263 RNTASTLKAQLEIAQQKLAESArDLAN 289
                 566777777777777777777766665 PP

  == domain 3  score: 42.1 bits;  conditional E-value: 1.9e-13
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraalraapda 67 
                 +a  ++  ++y++Aa+ +++ l+++   P  + A+ +lg+++++qg l+eA+ al +a l+  p++
  CCG92587.1 468 EASTLFSEQHYQEAAEKYHQILEKF---PNSVTAWANLGVIYYQQGQLKEAEnALAQA-LKLNPND 529
                 677889999****************...************************555555.6999987 PP

  == domain 4  score: 32.8 bits;  conditional E-value: 1.5e-10
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 +++++g+  +A++al +alk++   P +a ++  lg ++++ g ++ A+  + +a+   p++p
  CCG92587.1 505 IYYQQGQLKEAENALAQALKLN---PNDAFSHSILGIVYYQEGLFDNAVTELTRAIVINPNDP 564
                 59********************...77777*******************77777778888887 PP

  == domain 5  score: 13.5 bits;  conditional E-value: 0.00017
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgdaalrqg 48 
                 ++A++ l+ al++d   P   +A+++l+++++ q 
  CCG92587.1 581 EAAEKELRKALELD---PNYGDAHFNLAVIYATQR 612
                 68************...**************9884 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.3      0.45   2.4e+02       5      29 ..     219     246 ..     215     255 .. 0.75
   2 !   13.4   0.0   0.00021      0.11       8      43 ..     469     504 ..     465     505 .. 0.91
   3 !   20.4   0.5   1.2e-06   0.00063       3      35 ..     498     530 ..     498     531 .. 0.95
   4 !   15.4   0.0   4.6e-05     0.024       7      42 ..     536     571 ..     532     574 .. 0.93
   5 !   13.8   0.0   0.00015      0.08       5      43 ..     568     606 ..     564     607 .. 0.89
   6 ?   -0.2   0.0       4.7   2.5e+03      20      36 ..     619     636 ..     611     641 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.45
      TPR_14   5 lalaeal...lalGdpdeAiallrrala 29 
                 la aea    l++G+ ++ ia+lr+ l+
  CCG92587.1 219 LAQAEAKirtLQAGNSEAGIAALRDQLK 246
                 5555555333579************986 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00021
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 a+ l+  + ++eA++ ++++l+++P++ +aw  l+ 
  CCG92587.1 469 ASTLFSEQHYQEAAEKYHQILEKFPNSVTAWANLGV 504
                 778999999***********************9985 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 1.2e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdda 35 
                 a++ l+ +++++G+++eA+++l +al+l+P+da
  CCG92587.1 498 AWANLGVIYYQQGQLKEAENALAQALKLNPNDA 530
                 79999*************************996 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 4.6e-05
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawllla 42 
                 l+ ++++ G +d A++ l ra+  +P+d+ ++ +l+
  CCG92587.1 536 LGIVYYQEGLFDNAVTELTRAIVINPNDPKTRNYLG 571
                 899**************************9998886 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 0.00015
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                   l+ a+   G  ++A++ lr+al+l+P+  +a++ la 
  CCG92587.1 568 NYLGIACSKKGWQEAAEKELRKALELDPNYGDAHFNLAV 606
                 5688999999999***********************996 PP

  == domain 6  score: -0.2 bits;  conditional E-value: 4.7
      TPR_14  20 Aiallrralala.Pddae 36 
                 A +++++al+l+ P+d+ 
  CCG92587.1 619 AKRHYQDALSLGiPKDPS 636
                 8899******97787765 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   1.1e-09   5.7e-07       2      34 .]     497     529 ..     496     529 .. 0.96
   2 !    7.7   0.0    0.0085       4.5       7      34 .]     536     563 ..     532     563 .. 0.93
   3 !   18.2   0.2   3.7e-06     0.002       7      34 .]     570     597 ..     567     597 .. 0.93
   4 ?   -1.0   0.0       5.3   2.8e+03       2      13 ..     599     610 ..     598     612 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.1e-09
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                  a+ nlg iy ++g+++eA+ ++ +al+l+p++
  CCG92587.1 497 TAWANLGVIYYQQGQLKEAENALAQALKLNPND 529
                 69*****************************96 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0085
                 HHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldpdn 34 
                 lg +y + g +++A+  + +a+ ++p++
  CCG92587.1 536 LGIVYYQEGLFDNAVTELTRAIVINPND 563
                 7889********************9986 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 3.7e-06
                 HHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldpdn 34 
                 lg +++k+g  e+A++ ++kaleldp++
  CCG92587.1 570 LGIACSKKGWQEAAEKELRKALELDPNY 597
                 677899********************95 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 5.3
                 CHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylk 13 
                 +a++nl+ iy +
  CCG92587.1 599 DAHFNLAVIYAT 610
                 689*******75 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.7e-09   8.9e-07       4      63 ..     471     530 ..     469     537 .. 0.93
   2 !   12.4   0.0   0.00025      0.13       4      66 ..     539     601 ..     536     607 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.7e-09
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdap 63 
                 ++ +e+++++a + +  +l  +P+++  +   G++++q+G+l++A ++L ++l l+p+++
  CCG92587.1 471 TLFSEQHYQEAAEKYHQILEKFPNSVTAWANLGVIYYQQGQLKEAENALAQALKLNPNDA 530
                 56789****************************************************987 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00025
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdae 66 
                 ++ +e  ++ a   + r ++++P+dp  r   G++  + G  +aA ++L  +l+l+p+  da+
  CCG92587.1 539 VYYQEGLFDNAVTELTRAIVINPNDPKTRNYLGIACSKKGWQEAAEKELRKALELDPNYGDAH 601
                 6889999999999999*****************************************888775 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.4   3.8e-09     2e-06      22      74 ..     474     525 ..     471     528 .. 0.92
   2 !   13.0   0.0   0.00018     0.092       9      76 ..     536     595 ..     529     596 .. 0.91
   3 ?    1.9   0.4      0.51   2.7e+02      22      56 ..     583     609 ..     581     629 .. 0.57

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 3.8e-09
      TPR_12  22 AlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 +++++++a e + ++l++  p+ +t+  nLg +y+++g+++eA+++l +al++
  CCG92587.1 474 SEQHYQEAAEKYHQILEKF-PNSVTAWANLGVIYYQQGQLKEAENALAQALKL 525
                 689*********9998765.9******************************97 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00018
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 l+ v+++ g +d A + l +a+ i      p+ p    t++ Lg+++++ g +e+A++ l++al++++
  CCG92587.1 536 LGIVYYQEGLFDNAVTELTRAIVIN-----PNDPK---TRNYLGIACSKKGWQEAAEKELRKALELDP 595
                 9********************7777.....99988...6**************************975 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.51
      TPR_12  22 AlellekaleiarrllGpdhpltattlrnLgrlyr 56 
                 A++ l+kale+           +  + +nL+ +y 
  CCG92587.1 583 AEKELRKALELD-PN-------YGDAHFNLAVIYA 609
                 666666666666.33.......4455555555553 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0095         5       6      26 ..     469     489 ..     469     496 .. 0.87
   2 !   15.5   0.2   2.4e-05     0.012       1      34 [.     498     529 ..     498     530 .. 0.90
   3 ?    6.1   0.0     0.024        13       3      35 ..     534     564 ..     532     565 .. 0.83
   4 ?    2.9   0.0      0.26   1.4e+02       3      32 ..     568     595 ..     566     599 .. 0.84
   5 ?   -0.5   0.0       3.1   1.6e+03       1      10 [.     600     609 ..     600     612 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0095
       TPR_7   6 arlysrlGdyeeAielyeqsL 26 
                 a++ +++++y+eA+e y q L
  CCG92587.1 469 ASTLFSEQHYQEAAEKYHQIL 489
                 789999************977 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2.4e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 a+ nL+++y ++G+ +eA+  + q  al   p+d
  CCG92587.1 498 AWANLGVIYYQQGQLKEAENALAQ--ALKLNPND 529
                 789*********************..88777776 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.024
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltkdpeda 35 
                 + L+ +y ++G +++A++ +++  a+   p+d+
  CCG92587.1 534 SILGIVYYQEGLFDNAVTELTR--AIVINPNDP 564
                 5699******************..777666665 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.26
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 ++L+ ++s+ G  e A++ ++++L+   dp
  CCG92587.1 568 NYLGIACSKKGWQEAAEKELRKALE--LDP 595
                 79********************555..554 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 3.1
       TPR_7   1 aLlnLarlys 10 
                 a++nLa++y 
  CCG92587.1 600 AHFNLAVIYA 609
                 689******7 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.47   2.5e+02      14      32 ..      60      78 ..      40      78 .. 0.77
   2 !   11.5   0.1   0.00072      0.38      11      33 .]     473     495 ..     468     495 .. 0.84
   3 !   12.3   0.2    0.0004      0.21       2      32 ..     498     528 ..     497     529 .. 0.92
   4 ?    5.0   0.0     0.082        43       6      32 ..     536     562 ..     535     563 .. 0.92
   5 ?    2.0   0.0      0.76     4e+02       1      26 [.     599     626 ..     599     629 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.47
                HHHHHHHHHHHHHHHH-TT CS
       TPR_6 14 gdtdkAlealerlikeYPd 32
                +++++ ++ le l k++P+
  CCG92587.1 60 QRYTECCKRLELLKKNFPE 78
                5999*************95 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00072
                 HH.HHHHHHHHHHHHHHHHH-TT- CS
       TPR_6  11 rk.lgdtdkAlealerlikeYPdS 33 
                 ++ +  +++A e + ++++++P+S
  CCG92587.1 473 FSeQ-HYQEAAEKYHQILEKFPNS 495
                 4426.9*****************9 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.0004
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPd 32 
                 A  +l+  y+++g+  +A  al + +k  P+
  CCG92587.1 498 AWANLGVIYYQQGQLKEAENALAQALKLNPN 528
                 55689************************98 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.082
                 HHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYPd 32 
                 l+  y++ g  d+A++ l r i   P+
  CCG92587.1 536 LGIVYYQEGLFDNAVTELTRAIVINPN 562
                 7999***99*************99998 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.76
                 HHHHHHHHHHHHH..HHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrkl..gdtdkAlealerl 26 
                 dA ++la  y  +    ++ A++ +++ 
  CCG92587.1 599 DAHFNLAVIYATQrpPAKELAKRHYQDA 626
                 799********87454666788888776 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.7   3.7e+02      22      37 ..     475     490 ..     474     495 .. 0.84
   2 !   20.3   1.1   6.6e-07   0.00035       7      30 ..     501     524 ..     498     526 .. 0.95
   3 ?    4.3   0.0     0.075        40       8      29 ..     536     557 ..     534     560 .. 0.91
   4 ?    4.3   0.0     0.073        38       4      30 ..     566     592 ..     565     593 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.7
      TPR_10  22 ealleealairrrllG 37 
                 e++++ea + + ++l+
  CCG92587.1 475 EQHYQEAAEKYHQILE 490
                 899**********997 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 6.6e-07
      TPR_10   7 NLanalrqrgrydeAealleeala 30 
                 NL+++++q+g+++eAe+ l +al 
  CCG92587.1 501 NLGVIYYQQGQLKEAENALAQALK 524
                 9*********************97 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.075
      TPR_10   8 LanalrqrgrydeAealleeal 29 
                 L+++++q g +d A+  l +a+
  CCG92587.1 536 LGIVYYQEGLFDNAVTELTRAI 557
                 9**************9999887 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.073
      TPR_10   4 slnNLanalrqrgrydeAealleeala 30 
                 ++n L++a ++ g  ++Ae+ l++al+
  CCG92587.1 566 TRNYLGIACSKKGWQEAAEKELRKALE 592
                 6899*********************98 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   4.6e-05     0.024       8      37 ..      43      72 ..      42      80 .. 0.90
   2 ?    5.4   0.1     0.036        19       7      34 ..     465     492 ..     463     501 .. 0.82
   3 ?   -0.5   0.0       2.5   1.3e+03      26      49 ..     545     570 ..     544     585 .. 0.82
   4 ?   -1.9   0.1       6.9   3.6e+03       4      26 ..     571     593 ..     568     593 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.6e-05
         MIT  8 vkkAveeDnagnyeeAlelYkealelLlqa 37
                +++A +++++g+++ A++ Y+e+++ L ++
  CCG92587.1 43 LQEAEQMEKKGEIAGAFQRYTECCKRLELL 72
                589*********************999876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.036
         MIT   7 lvkkAveeDnagnyeeAlelYkealelL 34 
                 lv +A  + ++++y+eA e+Y + le +
  CCG92587.1 465 LVDEASTLFSEQHYQEAAEKYHQILEKF 492
                 67777788899**********9977766 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.5
         MIT  26 lYkealelLlqalk.e.kneerrell 49 
                 l+ +a+  L+ a+  + +++++r+ l
  CCG92587.1 545 LFDNAVTELTRAIViNpNDPKTRNYL 570
                 56799999****99879999999877 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 6.9
         MIT   4 AlelvkkAveeDnagnyeeAlel 26 
                 ++++ kk  +e  +++  +Alel
  CCG92587.1 571 GIACSKKGWQEAAEKELRKALEL 593
                 56777888888888888888886 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.6   0.00018     0.095      29      80 ..     468     520 ..     452     522 .. 0.87
   2 !   17.2   0.5   8.1e-06    0.0043      11      79 ..     481     553 ..     475     556 .. 0.83
   3 ?    5.4   0.0      0.04        21      20      68 ..     524     576 ..     519     589 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00018
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                  A +l++ + y++A e +++  ++ ++s  ++  ++  ++++++++eA++aL 
  CCG92587.1 468 EASTLFSEQHYQEAAEKYHQIlEKFPNSVTAWANLGVIYYQQGQLKEAENALA 520
                 4899**********************************************996 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 8.1e-06
                 HHHHHH.HHH--HHHHHH...HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  11 laerllaaetespedayl...lAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79 
                  ae++++   + p+++ +   l+  +y++gq k+A + l +a kln+++  ++ +++ ++++ + ++ A++ L
  CCG92587.1 481 AAEKYHQILEKFPNSVTAwanLGVIYYQQGQLKEAENALAQAlKLNPNDAFSHSILGIVYYQEGLFDNAVTEL 553
                 4677777666666665554558***************************************999999998876 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.04
                 H--HHHHHHH...HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHH CS
      ANAPC3  20 tespedayll...AlclylngqykrAyellrka.klnskslgcrylfAqcllk 68 
                 + +p+da+ +   + ++y+ g ++ A + l +a  +n+++++ r  ++ ++ k
  CCG92587.1 524 KLNPNDAFSHsilGIVYYQEGLFDNAVTELTRAiVINPNDPKTRNYLGIACSK 576
                 5577777774444********************99999999999888877766 PP

>> YfiO  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.7   3.2e-05     0.017       7      89 ..     464     550 ..     460     624 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.2e-05
                 HHHHHHHHHHHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SS....STTHHHHHHHHHH...HH CS
        YfiO   7 elYekgqealqkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlrlyPt....hknvdyvlYlrgl...sa 89 
                 +l +++ +  ++++y+eA++k +++ +++P+s   + a+l +i  yy+++++ ea+ ++ + l+l+P+    h     v+Y+ gl   + 
  CCG92587.1 464 KLVDEASTLFSEQHYQEAAEKYHQILEKFPNSVT-AWANLGVI--YYQQGQLKEAENALAQALKLNPNdafsHSILGIVYYQEGLfdnAV 550
                 56678889999********************975.46788888..5*********************74444667778999999855433 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       4.6   2.4e+03      39      60 ..     158     179 ..     142     200 .. 0.52
   2 ?   14.9   0.7   3.5e-05     0.018      25      62 ..     198     235 ..     196     238 .. 0.93
   3 ?   12.4   4.1   0.00021      0.11      16      64 ..     210     263 ..     207     265 .. 0.85
   4 ?    0.1   0.3       1.5   7.7e+02      35      63 ..     331     359 ..     325     361 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4.6
      GIT_CC  39 NtslsdelrlLQskvqkLqaeN 60 
                  ++l+ el++   k+++ ++e 
  CCG92587.1 158 ISQLEAELSQTKMKLEEAVSEA 179
                 4444444444444443333333 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3.5e-05
      GIT_CC  25 laaseakiqqLlkvNtslsdelrlLQskvqkLqaeNaq 62 
                 +++ e+ki+++l+ N+sl+ +l++   k+ +Lqa N++
  CCG92587.1 198 STNIESKITAVLQENNSLKAKLAQAEAKIRTLQAGNSE 235
                 6788******************************9985 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00021
      GIT_CC  16 eeylelKkalaaseakiqqLlkvNts.....lsdelrlLQskvqkLqaeNaqlr 64 
                 +e   lK +la +eaki  L++ N++     l d+l+  Q+++  L+ eN+  r
  CCG92587.1 210 QENNSLKAKLAQAEAKIRTLQAGNSEagiaaLRDQLKGVQEQLSILERENEVFR 263
                 666679******************75444449******************8766 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.5
      GIT_CC  35 LlkvNtslsdelrlLQskvqkLqaeNaql 63 
                 L+   + l+++l+ L s v +L +e++ l
  CCG92587.1 331 LKIDSKFLQKQLEFLSSPVVTLSPEEQAL 359
                 5555566999**************99876 PP

>> TPR_18  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       4.5   2.4e+03      24      41 ..      60      77 ..      26      79 .. 0.82
   2 ?   12.4   0.5   0.00025      0.13      12      96 ..     464     549 ..     455     569 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4.5
      TPR_18 24 gnyltaieqLealdtryP 41
                ++y++  ++Le l++ +P
  CCG92587.1 60 QRYTECCKRLELLKKNFP 77
                589999999999999998 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00025
      TPR_18  12 elyqeaqkaldegnyltaieqLealdtryPfGaYaeqaqLDLiYakykskdyelavasidrfirlnPa....hpkiDyvlYlrglanma 96 
                 +l  ea + + e++y++a+e+ +++  ++P    ++ a+L +iY  y++ +++ a+ + ++ ++lnP+    h  +  v+Y  gl + a
  CCG92587.1 464 KLVDEASTLFSEQHYQEAAEKYHQILEKFPNSV-TAWANLGVIY--YQQGQLKEAENALAQALKLNPNdafsHSILGIVYYQEGLFDNA 549
                 56778999999*******************865.6678899987..9999999999999999****96333366677788888877655 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.5      0.16        84       8      25 ..     469     486 ..     460     489 .. 0.86
   2 ?   11.0   0.2   0.00063      0.33       7      36 .]     502     529 ..     499     529 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.16
                 HHHHHHTT-HHHHHHH.. CS
       TPR_3   8 AaefynkkkyqeArelfs 25 
                 A ++++ + yqeA+e ++
  CCG92587.1 469 ASTLFSEQHYQEAAEKYH 486
                 8899999********955 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00063
                 HHHHHHHTT-HHHHHHH..HHHHHHH-TT- CS
       TPR_3   7 yAaefynkkkyqeArelfsYallaildken 36 
                 ++  +y+++++ eA++++   ++ +l +++
  CCG92587.1 502 LGVIYYQQGQLKEAENALA--QALKLNPND 529
                 6788*************55..999998876 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1    0.0016      0.82       3      26 .]     498     521 ..     496     521 .. 0.91
   2 ?   -0.1   0.0       4.1   2.2e+03       3      22 ..     532     551 ..     530     553 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0016
       TPR_4   3 allaLArallalGdldeAraller 26 
                 a ++L+  ++++G+l eA+ +l++
  CCG92587.1 498 AWANLGVIYYQQGQLKEAENALAQ 521
                 789****************99876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 4.1
       TPR_4   3 allaLArallalGdldeAra 22 
                  ++ L+ ++++ G +d A +
  CCG92587.1 532 SHSILGIVYYQEGLFDNAVT 551
                 6899*********9987766 PP

>> Coatomer_E  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       4.1   2.2e+03     217     285 ..     106     175 ..     102     180 .. 0.67
   2 ?   -2.3   0.1       4.5   2.4e+03     208     242 ..     271     307 ..     245     340 .. 0.47
   3 ?    6.6   0.1    0.0086       4.6     181     235 ..     476     530 ..     463     540 .. 0.87
   4 ?   -1.0   0.0       1.8   9.4e+02     104     126 ..     532     554 ..     528     556 .. 0.81
   5 ?   10.4   0.0   0.00057       0.3     209     257 ..     572     620 ..     560     630 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.1
                 HHHHHHHHHHHHHH-TT-HHHH.HHHHHHHHHTT--HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH CS
  Coatomer_E 217 yeeAeslLkeaLdkdakdeetL.iNlvvaaqhlgkdaevsernlsqlklshpehklvkdlnekeaeFdrl 285
                 ++e ++   +aL+    ++  L +N  v   +l k +++s+   +  kl+++ ++l  +l++ + + + +
  CCG92587.1 106 PDEVQKNVLTALNASRTEPPSLeSNNDVIKSLLSKHDKSSKSDEEVPKLKYRISQLEAELSQTKMKLEEA 175
                 6677777778888888887777557777777777776776666666677777777777666666655555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.5
                 HHHHHHTT-HHHHHHHHHHHHHH-T..T-HHHHHHHH CS
  Coatomer_E 208 AvvslllgryeeAeslLkeaLdkda..kdeetLiNlv 242
                 A  ++++++ +e    L +a + ++  k++e L  ++
  CCG92587.1 271 AQLEIAQQKLAESARDLANAPNTESlrKENEILRGII 307
                 4445555555555555554444332113333333333 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0086
                 THHHHHHHHHHHHHHHS---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-H CS
  Coatomer_E 181 ekiqdAyyifqelsekykstplllngkAvvslllgryeeAeslLkeaLdkdakde 235
                 +++q+A   ++++ ek+++         v+  ++g+ +eAe+ L +aL+ +++d+
  CCG92587.1 476 QHYQEAAEKYHQILEKFPNSVTAWANLGVIYYQQGQLKEAENALAQALKLNPNDA 530
                 5789999999999999999999999999999999999999999999999888875 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHTT-HHHHHHHHT CS
  Coatomer_E 104 lrllaaivflkegdfddalkllk 126
                  + + +iv+ +eg fd+a+  l 
  CCG92587.1 532 SHSILGIVYYQEGLFDNAVTELT 554
                 567889************98765 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00057
                 HHHHHTT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT--HHHHHH CS
  Coatomer_E 209 vvslllgryeeAeslLkeaLdkdakdeetLiNlvvaaqhlgkdaevser 257
                 +++ + g  e+Ae+ L++aL+ d+++ ++  Nl v      ++a+  ++
  CCG92587.1 572 IACSKKGWQEAAEKELRKALELDPNYGDAHFNLAVIYATQRPPAKELAK 620
                 55666677799**********************9998888888655444 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       1.7   9.2e+02      65     117 ..      92     145 ..      82     153 .. 0.68
   2 ?   14.7  11.4   4.5e-05     0.024      15     104 ..     147     234 ..     135     237 .. 0.89
   3 ?    3.1  11.7      0.17        91      26      94 ..     238     316 ..     235     344 .. 0.67
   4 ?   -0.2   0.9       1.8   9.2e+02      52      85 ..     326     359 ..     306     366 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.7
  CENP-F_leu_zip  65 aeelreleldLvalrse.keeLekelqkkqervseLeslnsslenlleekEqek 117
                     + +l+ l ++L ++  e ++++   l+ ++ +  +Les n  +++ll++  +  
      CCG92587.1  92 KDKLSLLGQKLGKTPDEvQKNVLTALNASRTEPPSLESNNDVIKSLLSKHDKSS 145
                     556666666666665543456667788888888889999988888888876654 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.5e-05
  CENP-F_leu_zip  15 serkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslns 104
                     s ++  +Lk ++ +Le+el + + ++e+++ ea   ++ + + ++e+ +   + +++e++++a+ +e+++L+ +l +   ++ +L++ ns
      CCG92587.1 147 SDEEVPKLKYRISQLEAELSQTKMKLEEAVSEANMLRNRLAATQKELAMF--KSTNIESKITAVLQENNSLKAKLAQAEAKIRTLQAGNS 234
                     45566689*********************************999999985..5689*****************************99887 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.17
  CENP-F_leu_zip  26 venLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalr......sekeeL....ekelqkkqe 94 
                     + +L  +l+ ++e+++ +++e E  +++++tlk+++e  +++l e   dL++        +e+e L    +++lq++ +
      CCG92587.1 238 IAALRDQLKGVQEQLSILERENEVFRNTASTLKAQLEIAQQKLAESARDLANAPnteslrKENEILrgiiNRQLQEQAR 316
                     678999999999************************9999999999999987432222226655442222456655444 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.8
  CENP-F_leu_zip  52 aevetlkeeieelaeelreleldLvalrsekeeL 85 
                     +e+++lk   + l+++l+ l++ +v+l+ e + L
      CCG92587.1 326 EELQNLKIDSKFLQKQLEFLSSPVVTLSPEEQAL 359
                     4566666666667777777777777777666655 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.5     0.038        20      14      34 ..     149     169 ..     147     199 .. 0.75
   2 ?    2.8   0.2      0.29   1.5e+02      24      46 ..     199     221 ..     195     231 .. 0.82
   3 ?   11.8   0.8   0.00044      0.23      18      54 ..     240     278 ..     237     281 .. 0.83
   4 ?    5.6   0.3     0.037        19      30      52 ..     293     315 ..     279     319 .. 0.78
   5 ?   -2.1   0.1       9.6   5.1e+03      34      53 ..     354     373 ..     337     376 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.038
       TSC22  14 EeVevLkekIkeLeernsele 34 
                 EeV  Lk +I  Le++ s+ +
  CCG92587.1 149 EEVPKLKYRISQLEAELSQTK 169
                 99********99999888754 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.29
       TSC22  24 keLeernseleeENslLkalasp 46 
                 ++ e++++++ +EN+ Lka +++
  CCG92587.1 199 TNIESKITAVLQENNSLKAKLAQ 221
                 57789999999*******87665 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00044
       TSC22  18 vLkekIkeLeernseleeENslLkalas..peqleqlsa 54 
                  L+++ k  +e+ s le+EN++++++as  + qle +++
  CCG92587.1 240 ALRDQLKGVQEQLSILERENEVFRNTAStlKAQLEIAQQ 278
                 69**********************999833356666666 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.037
       TSC22  30 nseleeENslLkalaspeqleql 52 
                  + l++EN++L+ +++ +  eq+
  CCG92587.1 293 TESLRKENEILRGIINRQLQEQA 315
                 5689********99988776665 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 9.6
       TSC22  34 eeENslLkalaspeqleqls 53 
                  eE +lLka ++p+  e ++
  CCG92587.1 354 PEEQALLKAPINPNLSEIQQ 373
                 46788999999998665554 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.8       9.3   4.9e+03       8       8 ..     255     255 ..     198     290 .. 0.57
   2 ?   -0.5   0.8       3.1   1.7e+03      19      55 ..     266     302 ..     248     332 .. 0.69
   3 ?    7.5   0.3    0.0096         5      16      51 ..     456     491 ..     442     495 .. 0.85
   4 ?    5.8   0.2     0.032        17      15      54 ..     489     528 ..     483     533 .. 0.87
   5 ?    6.9   0.1     0.014       7.6       9      54 ..     517     562 ..     508     571 .. 0.87
   6 ?    7.8   0.0    0.0077       4.1       8      57 ..     550     599 ..     547     627 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 9.3
      TPR_20   8 l 8  
                 l
  CCG92587.1 255 L 255
                 0 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 3.1
      TPR_20  19 pddldarldlAlallaagryeeAleqLleilkrdrkw 55 
                  + l+a+l+ A++ la++ ++ A +   e l+++ + 
  CCG92587.1 266 ASTLKAQLEIAQQKLAESARDLANAPNTESLRKENEI 302
                 5556788888888888877777765555555555554 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0096
      TPR_20  16 aanpddldarldlAlallaagryeeAleqLleilkr 51 
                 a+ p+d++  +d A  l+++++y+eA+e+  +il++
  CCG92587.1 456 ASLPADIQKLVDEASTLFSEQHYQEAAEKYHQILEK 491
                 567*************************99999876 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.032
      TPR_20  15 laanpddldarldlAlallaagryeeAleqLleilkrdrk 54 
                 l++ p+ + a  +l   ++++g+ +eA ++L + lk + +
  CCG92587.1 489 LEKFPNSVTAWANLGVIYYQQGQLKEAENALAQALKLNPN 528
                 677899999999********************99997765 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.014
      TPR_20   9 aeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrk 54 
                  +l +al+ np+d   +  l  +++++g  + A+++L + +  + +
  CCG92587.1 517 NALAQALKLNPNDAFSHSILGIVYYQEGLFDNAVTELTRAIVINPN 562
                 47889999*****************************998877665 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0077
      TPR_20   8 laeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkwed 57 
                 ++el +a+  np+d ++r  l  a  ++g +e+A ++L + l+ d ++ d
  CCG92587.1 550 VTELTRAIVINPNDPKTRNYLGIACSKKGWQEAAEKELRKALELDPNYGD 599
                 789999999999******99********9999999999999999999865 PP

>> RILP  Rab interacting lysosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       5.6     3e+03      14      34 ..     153     173 ..     152     183 .. 0.78
   2 ?    9.2   0.1    0.0027       1.4       6      36 ..     173     203 ..     168     207 .. 0.86
   3 ?    9.7   0.3    0.0019      0.99       8      34 ..     208     234 ..     205     251 .. 0.82
   4 ?   -0.6   0.3         3   1.6e+03      22      46 ..     248     271 ..     239     295 .. 0.57
   5 ?    0.1   0.2       1.8   9.7e+02      14      46 ..     268     299 ..     263     310 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 5.6
        RILP  14 eLKaqlfllqEELayYkseel 34 
                 +LK ++  l+ EL++ k ++ 
  CCG92587.1 153 KLKYRISQLEAELSQTKMKLE 173
                 799999999999998777664 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0027
        RILP   6 rdVLqERNeLKaqlfllqEELayYkseelee 36 
                  + + E N L  +l   q ELa++ks ++e+
  CCG92587.1 173 EEAVSEANMLRNRLAATQKELAMFKSTNIES 203
                 5667899********************9985 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0019
        RILP   8 VLqERNeLKaqlfllqEELayYkseel 34 
                 VLqE N LKa+l  ++  ++ ++ +++
  CCG92587.1 208 VLQENNSLKAKLAQAEAKIRTLQAGNS 234
                 9***********988877777777775 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 3
        RILP  22 lqEELayYkseeleeernsselree 46 
                 +qE L+ +++e+    rn+++  ++
  CCG92587.1 248 VQEQLSILERENEV-FRNTASTLKA 271
                 66666666666643.3333333333 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 1.8
        RILP  14 eLKaqlfllqEELayYkseeleeernsselree 46 
                  LKaql ++q  La   +++ + ++++s lr+e
  CCG92587.1 268 TLKAQLEIAQQKLAESARDLANAPNTES-LRKE 299
                 59*******9999998888888665555.3433 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   2.4     0.024        13      99     145 ..     144     190 ..     128     210 .. 0.79
   2 ?    2.8   0.9      0.19     1e+02     116     150 ..     229     268 ..     190     281 .. 0.52
   3 ?    1.7   0.0      0.41   2.1e+02     109     159 ..     450     500 ..     413     506 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.024
  EMP24_GP25L  99 seasdykdsakkekletleselkkleekldsikreqkylrereerlr 145
                  s++sd++  + k  +++le el + ++kl++  +e ++lr+r +  +
   CCG92587.1 144 SSKSDEEVPKLKYRISQLEAELSQTKMKLEEAVSEANMLRNRLAATQ 190
                  34444444555999**************************9977655 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.19
  EMP24_GP25L 116 les.....elkkleekldsikreqkylrereerlrdtnes 150
                  l+       +  l ++l+ +++++  l++ +e +r+t+  
   CCG92587.1 229 LQAgnseaGIAALRDQLKGVQEQLSILERENEVFRNTAST 268
                  3333333323335555555555555555555555555443 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.41
  EMP24_GP25L 109 kkeklet.leselkkleekldsikreqkylrereerlrdtnestnsrvvwws 159
                   +++l+  l   ++kl +  + + +eq y+++ e+ ++ ++e+  + v+ w+
   CCG92587.1 450 GSNELQAsLPADIQKLVDEASTLFSEQHYQEAAEKYHQ-ILEKFPNSVTAWA 500
                  4555555577799****************999887765.6677777777765 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.1    0.0011      0.58      33     134 ..     101     202 ..      94     206 .. 0.82
   2 ?    5.1  15.6     0.019        10      30     113 ..     204     316 ..     197     357 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0011
       Atg14  33 klksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkk 131
                 kl ++ ++++k +  al+  +    + +      ++l ++  +++++ e++ +lk ++sql +e+ ++k+kl++  ++    r +l+++q+el+  + +
  CCG92587.1 101 KLGKTPDEVQKNVLTALNASRTEPPSLESNNDVIKSLLSKHDKSSKSDEEVPKLKYRISQLEAELSQTKMKLEEAVSEANMLRNRLAATQKELAMFKST 199
                 677778888999999998888444444444445567778888999999*******************************9************9988777 PP

       Atg14 132 qia 134
                  i+
  CCG92587.1 200 NIE 202
                 765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.019
       Atg14  30 rlaklksekeslkkkiekalegke..eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk.............. 112
                 +++ ++ e++slk k+ +a+++ +  +a+++e+ i  ++++l+  + + ++l+++++  + + s+lk+++e++++kla+  ++l+              
  CCG92587.1 204 KITAVLQENNSLKAKLAQAEAKIRtlQAGNSEAGIAALRDQLKGVQEQLSILERENEVFRNTASTLKAQLEIAQQKLAESARDLAnapnteslrkenei 302
                 566788999999999999999988778888899999999999999***************************************977777766544443 PP

       Atg14 113 .............k 113
                              +
  CCG92587.1 303 lrgiinrqlqeqaR 316
                 33333333333222 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.3     0.017       8.8      46     126 ..     143     223 ..     129     236 .. 0.72
   2 ?    7.5   9.7    0.0094         5      33     144 ..     238     342 ..     230     358 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.017
        Fez1  46 kleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe 126
                 k ++++ee+ +l+ ++++ ++el + + +l+++ sea++lr+++ ++++el+ ++++  e++ ++  ++++s +ak  ++e
  CCG92587.1 143 KSSKSDEEVPKLKYRISQLEAELSQTKMKLEEAVSEANMLRNRLAATQKELAMFKSTNIESKITAVLQENNSLKAKLAQAE 223
                 456788889999999999999999999999999999999999999999999999996666555444444444444443333 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0094
        Fez1  33 ivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeele 131
                 i al+ ql+ ++++l+  e+e++ +++++++ +++le  +++l+++  +  +  + +e+l +e + lr  ++++ +e      ++++  a+r   eel+
  CCG92587.1 238 IAALRDQLKGVQEQLSILERENEVFRNTASTLKAQLEIAQQKLAESARDLANAPN-TESLRKENEILRGIINRQLQE------QARRDSAKRLVVEELQ 329
                 6688999999999999999999999999999999999999999888777777666.677777777777755553322......2222233344444444 PP

        Fez1 132 elkreverlraeL 144
                 +lk + + l+++L
  CCG92587.1 330 NLKIDSKFLQKQL 342
                 4444444444444 PP

>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       6.5   3.4e+03      79     134 ..     166     223 ..     156     229 .. 0.47
   2 ?   -2.1   0.1       5.7     3e+03     105     136 ..     260     286 ..     217     298 .. 0.55
   3 ?    9.8   0.3    0.0013      0.69     122     180 ..     474     533 ..     461     536 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6.5
     Wzy_C_2  79 eqlyltsepneaalrevtnpkvwkdr..flfrayadllelgllplspenlaaklalar 134
                 +q  ++ e++    ++ +n+++++++    f+ ++   +++ + ++   l+akla a+
  CCG92587.1 166 SQTKMKLEEAVSEANMLRNRLAATQKelAMFKSTNIESKITAVLQENNSLKAKLAQAE 223
                 3333444444443444444433333334555555555555555555555555555555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.7
     Wzy_C_2 105 flfrayadllelgllplspenlaaklalarkl 136
                  +fr++a+ l++ l  +++     kla + + 
  CCG92587.1 260 EVFRNTASTLKAQLEIAQQ-----KLAESARD 286
                 4455555555555444444.....44433333 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0013
     Wzy_C_2 122 spenlaaklalarklihlsPep.avierlilslallGdedeAeqilararalfpeedakw 180
                 s +++++  + ++++++ +P   +  ++l + + ++G+ +eAe  la+a +l p+++++ 
  CCG92587.1 474 SEQHYQEAAEKYHQILEKFPNSvTAWANLGVIYYQQGQLKEAENALAQALKLNPNDAFSH 533
                 67899999************8626689***************************999875 PP

>> DUF4192  Domain of unknown function (DUF4192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   3.6       9.6   5.1e+03     169     214 ..     232     278 ..     165     331 .. 0.53
   2 ?   -2.4   0.0       7.3   3.9e+03     125     160 ..     416     448 ..     415     498 .. 0.60
   3 ?    6.3   0.0     0.017       8.9     270     305 ..     497     532 ..     464     540 .. 0.81
   4 ?    2.6   0.0      0.22   1.2e+02     268     302 ..     563     597 ..     547     602 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 9.6
     DUF4192 169 raaeraaaaleralarprdaerr.sdpaevrraaleavraalarvaa 214
                    e+  aal+++l+  +++ +  +++ ev r +  +++a+l+ +++
  CCG92587.1 232 GNSEAGIAALRDQLKGVQEQLSIlERENEVFRNTASTLKAQLEIAQQ 278
                 22333333333333333333333333333333333333333333333 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 7.3
     DUF4192 125 vpdpaasplaaaavlaGrvvegsReelearlapveg 160
                 +++pa+ ++a +a ++G+ ++ + +    + +p + 
  CCG92587.1 416 IVPPATQQVAYQAPHEGSAIQSDPK---PQTDPPHS 448
                 6777777999999999998877655...34444444 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.017
     DUF4192 270 aalaLlAvvawarGdgalAgvaLeaAleadPghsla 305
                  a a l+v  +++G+   A  aL+ Al++ P   ++
  CCG92587.1 497 TAWANLGVIYYQQGQLKEAENALAQALKLNPNDAFS 532
                 456779*************************99997 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.22
     DUF4192 268 rAaalaLlAvvawarGdgalAgvaLeaAleadPgh 302
                 +++    l++++  +G+++ A   L+ Ale+dP +
  CCG92587.1 563 DPKTRNYLGIACSKKGWQEAAEKELRKALELDPNY 597
                 566666799************************98 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.0   0.00062      0.33      94     158 ..     132     199 ..     123     202 .. 0.77
   2 ?    3.3   2.4       0.1        54     109     157 ..     230     278 ..     208     282 .. 0.63
   3 ?   -2.4   0.0       5.7     3e+03     127     149 ..     324     346 ..     292     351 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00062
  Fzo_mitofusin  94 qvqqelsstfarlcqqvdetekeleeeikelekeie....kleevqkkakllrnkaslleseLekfeeq 158
                     v + l s +++ ++++de   +l+ +i++le+e++    klee+ ++a++lrn+    ++eL++f+++
     CCG92587.1 132 DVIKSLLSKHDK-SSKSDEEVPKLKYRISQLEAELSqtkmKLEEAVSEANMLRNRLAATQKELAMFKST 199
                    566666666665.45667777889999999998886333369************************987 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.1
  Fzo_mitofusin 109 qvdetekeleeeikelekeiekleevqkkakllrnkaslleseLekfee 157
                    q  ++e+ + +  ++l+   e+l  ++++ +++rn as+l+++Le  ++
     CCG92587.1 230 QAGNSEAGIAALRDQLKGVQEQLSILERENEVFRNTASTLKAQLEIAQQ 278
                    3444555555555566666667777788888889999999888887776 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 5.7
  Fzo_mitofusin 127 eiekleevqkkakllrnkaslle 149
                     +e+l++++  +k l+++ ++l+
     CCG92587.1 324 VVEELQNLKIDSKFLQKQLEFLS 346
                    35666666666666666666554 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  10.3     0.011       5.9     173     331 ..     134     290 ..     127     324 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.011
        FUSC 173 aaaalageegaeareaararlaadilalealrsqaayesprirararalrrllsrmlallallssla..rllarlraeeaaavpelaallaelaaleaa 269
                 ++++l+ ++++++++++  +l  +i +lea +sq+ +  ++   +a+ lr  l++++  la + s+   +   ++ +e++     l+a la+++a  ++
  CCG92587.1 134 IKSLLSKHDKSSKSDEEVPKLKYRISQLEAELSQTKMKLEEAVSEANMLRNRLAATQKELAMFKSTNieSKITAVLQENNS----LKAKLAQAEAKIRT 228
                 6788999999999999999******************99997777777777777777777777665410333344333333....55555555555555 PP

        FUSC 270 aaaealeaalaalrarlralrraleadadtaalllarlaellaelaqllaslraleaaiaaa 331
                  +a   ea +aalr++l+ ++++l+     ++++  ++ +l a+l  ++++l++++++ a+a
  CCG92587.1 229 LQAGNSEAGIAALRDQLKGVQEQLSILERENEVFRNTASTLKAQLEIAQQKLAESARDLANA 290
                 8999999999*********9999995555555555555555555555555555555555543 PP

>> Leu_zip  Leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  15.0   0.00035      0.18     132     251 ..     148     266 ..     108     279 .. 0.85
   2 ?   -1.7   2.8       3.2   1.7e+03     164     237 ..     267     343 ..     259     350 .. 0.58
   3 ?   -1.6   0.0       2.9   1.5e+03     116     153 ..     440     480 ..     428     521 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00035
     Leu_zip 132 kkeierLkeenekLkerlkelEkqatsaleeksklekalkelqkelgekkdekenskeiskleeklaelkldlektleek.tasaksleedlastkhel 229
                 + e+ +Lk   ++L++ l +   ++++a++e ++l++ l+++qkel   k+++  +++i+ + ++ ++lk++l +   +  t +a + e+ +a  + +l
  CCG92587.1 148 DEEVPKLKYRISQLEAELSQTKMKLEEAVSEANMLRNRLAATQKELAMFKSTNI-ESKITAVLQENNSLKAKLAQAEAKIrTLQAGNSEAGIAALRDQL 245
                 4688899999999999999999999********************999986665.788888889999******99776663777788999********* PP

     Leu_zip 230 LkvqeqLelaekeLekkfqqta 251
                   vqeqL++ e+e e  f++ta
  CCG92587.1 246 KGVQEQLSILERENE-VFRNTA 266
                 ************976.455554 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.2
     Leu_zip 164 sklekalkelqkelgekkdekenskeiskleeklaelkldlektleek...tasaksleedlastkhelLkvqeqLe 237
                 s l+++l+ +q++l e+    +n+ ++++l+++ + l+  ++++l+e+    + ++ + e+l++ k +   +q+qLe
  CCG92587.1 267 STLKAQLEIAQQKLAESARDLANAPNTESLRKENEILRGIINRQLQEQarrDSAKRLVVEELQNLKIDSKFLQKQLE 343
                 56777777777777776666665566666655555555544444444311023333445677777777777777766 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.9
     Leu_zip 116 kkkLePlnegGgaeL...LkkeierLkeenekLkerlkelE 153
                 k++ +P + +G+ eL   L  +i++L +e ++L +  +  E
  CCG92587.1 440 KPQTDPPHSAGSNELqasLPADIQKLVDEASTLFSEQHYQE 480
                 55666666666666644466677777777777754433333 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7  12.4   0.00012     0.066      26     124 ..     132     231 ..     114     232 .. 0.78
   2 ?    5.3  11.4     0.051        27      14     105 ..     201     287 ..     197     304 .. 0.55
   3 ?    0.6   2.9       1.4   7.3e+02      34      73 ..     310     345 ..     291     362 .. 0.60
   4 ?   -1.6   0.1       6.9   3.6e+03      28      28 ..     485     485 ..     443     525 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00012
      APG6_N  26 daYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeee.....erfwreynelqlelleleeel 119
                 d  ++ l+k +k++k    +dee+ +l+ ++++le+e ++   +L+e+ +e   l++ laa ++el+  +  +     ++ ++e n+l+ +l++ e + 
  CCG92587.1 132 DVIKSLLSKHDKSSK----SDEEVPKLKYRISQLEAELSQTKMKLEEAVSEANMLRNRLAATQKELAMFKSTNieskiTAVLQENNSLKAKLAQAEAKI 226
                 555555555555544....467*******************************************9987765511111456788888999999999988 PP

      APG6_N 120 dslea 124
                 + l+a
  CCG92587.1 227 RTLQA 231
                 88875 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.051
      APG6_N  14 ldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwrey 105
                 +++++ ++ +e +++++ l++ +++ ++      +  ++e  +++l+++ +  +e+L  le+e+e  ++  ++l+++le  +++ ++  r+ 
  CCG92587.1 201 IESKITAVLQENNSLKAKLAQAEAKIRTL-----QAGNSEAGIAALRDQLKGVQEQLSILERENEVFRNTASTLKAQLEIAQQKLAESARDL 287
                 44555555555555555555555554443.....2344555566666666666666666666666666666666666666666555555554 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 1.4
      APG6_N  34 klkkekkeeekqdeeleeleeeleklekeeeelleeLkel 73 
                 +l+++++     d+  +   eel++l+ + + l+++L+ l
  CCG92587.1 310 QLQEQARR----DSAKRLVVEELQNLKIDSKFLQKQLEFL 345
                 33333222....3455666666777777777777777655 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 6.9
      APG6_N  28 Y 28 
                 Y
  CCG92587.1 485 Y 485
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2005  (0.11183); expected 358.6 (0.02)
Passed bias filter:                      691  (0.0385409); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        75  (0.00418317); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 1.25u 0.37s 00:00:01.62 Elapsed: 00:00:00.56
# Mc/sec: 3478.38
//
Query:       CCG92588.1  [L=437]
Description: Permease of the major facilitator superfamily [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-28   99.0  30.3    2.9e-24   85.6  18.1    2.6  3  ATG22     Vacuole effluxer Atg22 like
    3.5e-28   98.6  40.1    1.5e-20   73.5  21.3    2.7  2  MFS_1     Major Facilitator Superfamily
    1.1e-08   34.4  24.7    3.4e-07   29.5  14.0    2.4  2  Sugar_tr  Sugar (and other) transporter
    1.3e-07   31.0  12.6    2.8e-07   29.9  12.6    1.5  1  PUCC      PUCC protein
  ------ inclusion threshold ------
       0.23   11.4   1.1       0.51   10.3   1.1    1.5  1  FixH      FixH


Domain annotation for each model (and alignments):
>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.11     4e+02       6      27 ..      22      43 ..      20      59 .. 0.80
   2 !   20.9   1.5   3.3e-08   0.00012      73     157 ..      63     147 ..      45     151 .. 0.82
   3 !   85.6  18.1     8e-28   2.9e-24     192     472 ..     153     424 ..     148     429 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.11
       ATG22  6 llgWylyafaaevfavvavgsf 27
                  +W +++f++++f++v+v   
  CCG92588.1 22 RISWCAFDFSNSAFSTVVVDLV 43
                579************9987654 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 3.3e-08
       ATG22  73 vlytfslsvllqavvvislsglADygnyrknlLlafaligslstilfllvtpkkYllgavlyivsntcfgaslvllnsfLPllvr 157
                 +++t+ l  ll +++++ ++ ++D +  rk ++l++ ++  l+t  + + ++     g + y ++ ++f+ s +l  sfLP ++ 
  CCG92588.1  63 ITFTTFLNQLLVGLLLPLVGTFSDVTGKRKEIVLVSFILCTLTTAYLGTTVEGDVWKGLITYAIAHISFSFSESLVASFLPEIAP 147
                 45666688999*******************9999888888888877777655555579999********************9975 PP

  == domain 3  score: 85.6 bits;  conditional E-value: 8e-28
       ATG22 192 riSslGlaigylgailvqiisilivia..lgstatfslrlalllvGlwWliftipaalllkkrp.gpplpkglsyliygwkslgrtlkqarklkdvllf 287
                 riS+++ a g+lga++ ++ +  ++ +  ++s+    +rl++ lv+l+ ++  +p +l   +r  g++ +     l++  +++++++ ++ k k vllf
  CCG92588.1 153 RISGWSRAAGNLGAFISLMTIYPLLSGgfIQSN-VDRIRLCFPLVALIYALAGLPFFLNTHQRTpGSQAN-FSIALKNFYSRTAQMIPSLLKQKYVLLF 249
                 8*************9987766655543114555.99********************99988877577766.5567788889999999************ PP

       ATG22 288 LvawfllsdgiatvsstavlfaktelkmstaklillsivaviaavlGaflwplvsrrlnlktkktllaiivlfeliplyGllGiilgkiGlkqpwEfyv 386
                  +a+fl+s g + ++ +++++ + +l++s a+ i l +  +i + +Gaf++ ++  +++ k  +tl + + l+ ++++ +l+        l q+w f++
  CCG92588.1 250 FLAFFLYSSGATVIMVVIAVYSQMQLGVSGAEQIWLFLSLQIGSAIGAFIFGFLEDTFGPK--RTLQLNVSLWFVCVALTLF--------LDQKWLFFL 338
                 *********************************************************9877..**************99999........********* PP

       ATG22 387 lavvyglvlgglssysRslfseLiPrGkEaaFFsLyaitdkgssvigplivglItDrtgnirsafvflavLlvvplpllllvdver 472
                 +++++g++ g+l+s+sR+l++ + P+ +  ++F+L+ ++++ +s igpl++gl+ +  ++ +++++  ++++ ++l  l++++ ++
  CCG92588.1 339 ITFLIGMANGSLYSVSRALMGLISPPEQVGEYFGLWGLVGRLASGIGPLVFGLLFEINKSFQTPLFAPLIFFGLGLFGLIFLPNQK 424
                 ******************************************************************99999999998888877665 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8  18.4   9.7e-12   3.5e-08      34     238 ..      63     275 ..      23     276 .. 0.70
   2 !   73.5  21.3   4.1e-24   1.5e-20       1     184 [.     249     431 ..     249     435 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 9.7e-12
       MFS_1  34 igllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalg.lllllfa..sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa 128
                 i + + l  l+ +++ +++G +sd  G r+ ++l++++l  l+ ++l++ +    +w  l+  +++ +  +++ +++a+++ +++p++  gr  g+  a
  CCG92588.1  63 ITFTTFLNQLLVGLLLPLVGTFSDVTGKRKeIVLVSFILCTLTtAYLGT-TveGDVWKGLITYAIAHISFSFSESLVASFLPEIAPESMLGRISGWSRA 160
                 334455588899*******************************555555.34688998888888999999***************************** PP

       MFS_1 129 gfslGail.....gpllggllasslg.....Wravfyilaivsllafvlfllllpeepperkrkspkeee.kgtgpaplvp....awkallkdpvlwil 212
                 + +lGa +      pll+g ++          r++f ++a++++la++    +++ ++ + + +        + +     +     + +llk++    +
  CCG92588.1 161 AGNLGAFIslmtiYPLLSGGFI---QsnvdrIRLCFPLVALIYALAGL---PFFLNTHQRTPGSQANFSIaLKNFY----SrtaqMIPSLLKQK----Y 245
                 9999987611111455555555...15556****************99...4443333333333222222212233....23344788999999....5 PP

       MFS_1 213 lialllfffgfsg....lltllplylqevl 238
                 ++ ++l+ff +s+    +++ + +y q++l
  CCG92588.1 246 VLLFFLAFFLYSSgatvIMVVIAVYSQMQL 275
                 566666655555555448888888866555 PP

  == domain 2  score: 73.5 bits;  conditional E-value: 4.1e-24
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 ++la+fl++ +++++++++  + + +lg+s++e+ +l+    +g+a++++++G+l d fG++r+l l + l++++++l lf  + wl+++  +l G++ 
  CCG92588.1 249 FFLAFFLYSSGATVIMVVIAVYSQMQLGVSGAEQIWLFLSLQIGSAIGAFIFGFLEDTFGPKRTLQLNVSLWFVCVALTLFLDQKWLFFLITFLIGMAN 347
                 589999*************999999**************************************************555556688899************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrksp 184
                 g+l++++ al+  ++p+e+ g ++gl+++   l++ +gpl+ gll   + +++ + ++  i++ l+  lf+l ++ ++++ k +s+
  CCG92588.1 348 GSLYSVSRALMGLISPPEQVGEYFGLWGLVGRLASGIGPLVFGLLFeINKSFQTPLFAPLIFFGLG--LFGLIFLPNQKPTKIESK 431
                 **********************************************77777999988888888888..666777666666665554 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   2.8   6.9e-05      0.25      65     160 ..      80     175 ..      53     215 .. 0.72
   2 !   29.5  14.0   9.4e-11   3.4e-07      44     193 ..     278     422 ..     247     424 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.9e-05
                 HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  65 fagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglg 160
                 ++g+++d+ G++k ++ ++++++  +     ++ +  v+  ++   ++ i+  +   lv  ++ EiAp+++ g++ ++   a  +G +++ ++ + 
  CCG92588.1  80 LVGTFSDVTGKRKEIVLVSFILCTLTTAYLGTTVEGDVWKGLITYAIAHISFSFSESLVASFLPEIAPESMLGRISGWSRAAGNLGAFISLMTIYP 175
                 467777778877777777666666666666666566777777777888888888888888888888888888888888777777777777776554 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 9.4e-11
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s   + +++ ++++G++iG++++g+l d+fG k +l   + l +++ +l+ + +   + +++++  +l+G++ G  + ++  +++ i+p++  g   +l
  CCG92588.1 278 SGAEQIWLFLSLQIGSAIGAFIFGFLEDTFGPKRTLQLNVSLWFVCVALTLFLD---QKWLFFLITFLIGMANGSLYSVSRALMGLISPPEQVGEYFGL 373
                 334579************************************************...88*******************************987777766 PP

                 HHHHHHHHHHHH.HHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS-- CS
    Sugar_tr 143 yqlaitfGilva.aifglglnktsnadgwrillglqlvpallllilllflPE 193
                 + l   +   ++  +fgl ++ ++    ++ +l+  l++  l l++l+flP+
  CCG92588.1 374 WGLVGRLASGIGpLVFGLLFEINK---SFQTPLFAPLIFFGLGLFGLIFLPN 422
                 666555544444133444444444...5**********************95 PP

>> PUCC  PUCC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9  12.6   7.8e-11   2.8e-07     203     383 ..     240     414 ..     219     420 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 7.8e-11
        PUCC 203 lvaekqalaflaflllgtlaffmqdviLEpYgGevlgLtvgeTTkLtalfalGtlvGlllaglvlsrglkkarlaslgvllgllsflllilaallenva 301
                 l+ +k +l f+++ +l+  + ++  v++  Y+   lg+  +e  +L   + +G  +G  + g++    ++++r+ +l v l  +++    l+ +l++++
  CCG92588.1 240 LLKQKYVLLFFLAFFLYSSGATVIMVVIAVYSQMQLGVSGAEQIWLFLSLQIGSAIGAFIFGFLED-TFGPKRTLQLNVSLWFVCVA---LTLFLDQKW 334
                 456778889999999999999*****************************************8665.**********9998877755...566899*** PP

        PUCC 302 llvagvlllGlasGlfavaaltlmldlaaeeraglalGaWGaaQaiaaglavllggalrdllkalaandaalayglVfalea 383
                 l+++ ++l+G+a+G +   + +lm  ++++e++g   G+WG++  +a g++ l+ g l ++ k + +  +++a  + f l +
  CCG92588.1 335 LFFLITFLIGMANGSLYSVSRALMGLISPPEQVGEYFGLWGLVGRLASGIGPLVFGLLFEINKSFQT--PLFAPLIFFGLGL 414
                 **************998888999999**********************************9999987..6666555555555 PP

>> FixH  FixH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.1   0.00014      0.51       6      37 ..     244     275 ..     241     279 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
        FixH   6 whvllflialfavvvvvnltmlylAvstkdgl 37 
                 + vllf++a+f+ + ++ ++m+++Av ++ +l
  CCG92588.1 244 KYVLLFFLAFFLYSSGATVIMVVIAVYSQMQL 275
                 5699**********************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 2793.18
//
Query:       CCG92589.1  [L=433]
Description: Permease of the major facilitator superfamily [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-31  107.6  48.2    8.3e-22   77.6  33.6    2.7  2  MFS_1          Major Facilitator Superfamily
    2.4e-17   62.7  26.8    1.8e-12   46.7  16.7    2.2  2  ATG22          Vacuole effluxer Atg22 like
      0.001   18.2  12.2     0.0024   17.0  12.2    1.8  1  PUCC           PUCC protein
  ------ inclusion threshold ------
      0.013   14.4  21.6     0.0057   15.6   9.9    2.2  2  Sugar_tr       Sugar (and other) transporter
      0.038   13.0  17.7      0.051   12.6  17.7    1.3  1  Nuc_H_symport  Nucleoside H+ symporter
        1.4    7.3   7.1       0.67    8.3   0.1    2.1  2  MFS_3          Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6  33.6   2.8e-25   8.3e-22      32     353 .]      61     387 ..      33     387 .. 0.80
   2 !   43.9   6.6   4.8e-15   1.4e-11      43     180 ..     292     429 ..     287     433 .] 0.86

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 2.8e-25
       MFS_1  32 seigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalg.lllllfa..sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigll 126
                   +g+++ +  ++ a++ +++G+lsd +  r+ +l + +++ +l+ +ll++ +    +w  l++  l+ +  ++   +  +++ ++ p++  gr  g+ 
  CCG92589.1  61 FLLGMAAFFTQIFVAIFLPFIGALSDCIAKRKfLLGFFFVICILAtALLGT-TheGDVWKSLLCYSLANISFSFTENIFSSFLPELIPPPSVGRFSGWT 158
                 457888888999****************99997777777777777333333.3566788899999999******************************* PP

       MFS_1 127 sagfslGailgpllgglla.sslg......Wravfyilaivsllafv.lfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwilliall 217
                  a+ ++G i+  ll   l+   +        r++f i+a+++++++  l  ++ +e ++++   ++  +   +  + l++   ++ ++++l+++++a++
  CCG92589.1 159 RAFGNIGGIFSLLLVYPLLsPGFTvsntelLRLCFPIVAAIYMMCGFpL--FFNLELQKKSTHTKSFAQALLKILTDLKETALLIAHNKPLLLYFAASF 255
                 **********977766444144448888899999***********8733..333333333333333344234444444444455555555556****** PP

       MFS_1 218 lfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgf 316
                 lff + ++l++ l +y+q+ +g++g+ ++g ++ l++++g  +++++g++ d+lg+r+ l l lll + ++ +l+++ +    + ++++++liG+g g 
  CCG92589.1 256 LFFSAATILMIILAVYAQMEYGITGAQQVG-IFLLIQAGGTLGSFIFGFFQDKLGSRKSLQLDLLLWIGCVSSLVFAETK---TSFYVASFLIGIGNGS 350
                 ************************855555.8888899999999**********************99999999999999...99999*********** PP

       MFS_1 317 vfpsllalasdlappeeagtasglfntagslggalgp 353
                   +++ a++s l  +++ g+ +gl +++  +++ +gp
  CCG92589.1 351 LLSLARAVMSLLSEEDKIGKHFGLWGLICRIATGIGP 387
                 ***********************************98 PP

  == domain 2  score: 43.9 bits;  conditional E-value: 4.8e-15
       MFS_1  43 lgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpll 140
                 +g  ++s+++G++ d++G+r+ l l lll++ ++  l+fa      ++v+ +l G+g g+l++++ a+++ ++ +++ g+ +gl+++   +++ +gpl 
  CCG92589.1 292 AGGTLGSFIFGFFQDKLGSRKSLQLDLLLWIGCVSSLVFA-ETKtSFYVASFLIGIGNGSLLSLARAVMSLLSEEDKIGKHFGLWGLICRIATGIGPLS 389
                 57789****************************7777796.33336**************************************************988 PP

       MFS_1 141 gglla.sslgWravfyilaivsllafvlfllllpeepperk 180
                  ++l  +  ++  ++++  + ++ +f+l + +lp++++e+ 
  CCG92589.1 390 FSYLFiATNSFKTPMLLPLFYFIGSFIL-VSFLPQKQHEKT 429
                 8877769999**9999999999999884.566666666655 PP

>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   2.3   2.1e-08   6.3e-05      82     156 ..      72     146 ..      46     153 .. 0.83
   2 !   46.7  16.7   5.9e-16   1.8e-12     193     474 ..     154     427 ..     149     430 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.1e-08
       ATG22  82 llqavvvislsglADygnyrknlLlafaligslstilfllvtpkkYllgavlyivsntcfgaslvllnsfLPllv 156
                 ++ a++++++++l+D    rk lL +f +i +l+t l+ + ++       + y ++n++f+ +  +++sfLP l+
  CCG92589.1  72 IFVAIFLPFIGALSDCIAKRKFLLGFFFVICILATALLGTTHEGDVWKSLLCYSLANISFSFTENIFSSFLPELI 146
                 3557778899*********************9999999999665555667889*******************996 PP

  == domain 2  score: 46.7 bits;  conditional E-value: 5.9e-16
       ATG22 193 iSslGlaigylgailvqiisilivialgsta..tfslrlalllvGlwWliftipaalllkkrp.gpplpkglsyliygwkslgrtlkqarklkdvllfL 288
                  S++  a+g++g+i+ +++   ++ + g t   t  lrl++ +v+ + +++ +p+++ l  ++   ++++ ++ l + +  l +t+  + + k +ll+ 
  CCG92589.1 154 FSGWTRAFGNIGGIFSLLLVYPLL-SPGFTVsnTELLRLCFPIVAAIYMMCGFPLFFNLELQKkSTHTKSFAQALLKILTDLKETALLIAHNKPLLLYF 251
                 58888899****998776655544.3333333499**********************99877755556688999999********************** PP

       ATG22 289 vawfllsdgiatvsstavlfaktelkmstaklillsivaviaavlGaflwplvsrrlnlktkktllaiivlfeliplyGllGiilgkiGlkqpwEfyvl 387
                 +a fl+  + + ++ + +++a+ e +++ a+ + + +++++ ++lG+f++ +++ +l+ +  k+l + ++l++     G+   + + +  +++  fyv 
  CCG92589.1 252 AASFLFFSAATILMIILAVYAQMEYGITGAQQVGIFLLIQAGGTLGSFIFGFFQDKLGSR--KSLQLDLLLWI-----GC---VSSLVFAETKTSFYVA 340
                 ******99999999999***************************************9998..77776666664.....33...344455799******* PP

       ATG22 388 avvyglvlgglssysRslfseLiPrGkEaaFFsLyaitdkgssvigplivglItDrtgnirsafvflavLlvvplpllllvdvergr 474
                 ++++g+  g+l s++R+++s L  + k  + F+L+ ++ + +  igpl ++ +  +t++ ++++++ ++ ++ +++l+ ++++++  
  CCG92589.1 341 SFLIGIGNGSLLSLARAVMSLLSEEDKIGKHFGLWGLICRIATGIGPLSFSYLFIATNSFKTPMLLPLFYFIGSFILVSFLPQKQHE 427
                 ******************************************************************999999*****9999887755 PP

>> PUCC  PUCC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0  12.2     8e-07    0.0024     150     354 ..     179     388 ..      64     394 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8e-07
        PUCC 150 d...ytearLirvvqg.valitlvlnvlalWkievkskkkk.....eekeeeepslleawlklvaekqalaflaflllgtlaffmqdviLEpYgGevlg 239
                 +   +++++L+r+  + va+i ++    +  + e ++k+++     +   +    l+e +l+++ +k  l ++a+ +l   a ++  +iL  Y+    g
  CCG92589.1 179 PgftVSNTELLRLCFPiVAAIYMMCGFPLFFNLELQKKSTHtksfaQALLKILTDLKETALLIAHNKPLLLYFAASFLFFSAATILMIILAVYAQMEYG 277
                 4555666666666544144444555555556666655555522221111222234555566666666677777777777778888889*********** PP

        PUCC 240 LtvgeTTkLtalfalGtlvGlllaglvlsrglkkarlaslgvllgllsflllilaallenvallvagvlllGlasGlfavaaltlmldlaaeeraglal 338
                 +t ++   +  l   G+ +G  + g+++  +l+  +  +l +ll +++++ l++a     ++ + ++ +l+G+++G +   a ++m  l+ e+++g   
  CCG92589.1 278 ITGAQQVGIFLLIQAGGTLGSFIFGFFQD-KLGSRKSLQLDLLLWIGCVSSLVFAE---TKTSFYVASFLIGIGNGSLLSLARAVMSLLSEEDKIGKHF 372
                 **9999999888888888899999*9998.99999999**************9985...5677999**********9999999999999********** PP

        PUCC 339 GaWGaaQaiaaglavl 354
                 G+WG++  ia g++ l
  CCG92589.1 373 GLWGLICRIATGIGPL 388
                 ************9965 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   4.3    0.0052        16      65     161 ..      80     176 ..      53     210 .. 0.79
   2 ?   15.6   9.9   1.9e-06    0.0057      19     192 ..     196     422 ..     193     425 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0052
                 HHHHHHHHTTHHHHHHH.HHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  65 fagllgdrfGRkkslli.aavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl 161
                 f+g l+d + ++k ll  + v+++ +++l ++++ +  v+  +++  l+ i+  ++ ++ + ++ E+ p+   g++ +++  +  +G +++  + + l
  CCG92589.1  80 FIGALSDCIAKRKFLLGfFFVICILATALLGTTH-EGDVWKSLLCYSLANISFSFTENIFSSFLPELIPPPSVGRFSGWTRAFGNIGGIFSLLLVYPL 176
                 6788999999999888647778888888888888.569********************************************9999999998887765 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.9e-06
                 GGGTHHHHHHHHTSTT--SHHHHHH.............................................................HHHHHHHTHHHHH CS
    Sugar_tr  19 igafltllkfaknfglsksksskee..........................................................ssvlsglivsiflvGa 59 
                 ++a++++ +f  +f+l+ +k+s+ +                                                          +  ++  i+ + ++G+
  CCG92589.1 196 VAAIYMMCGFPLFFNLELQKKSTHTksfaqallkiltdlketalliahnkplllyfaasflffsaatilmiilavyaqmeygiTGAQQVGIFLLIQAGG 294
                 5666666666666666666666666667777777777777777777777777777777777777777777777777777777777788999999***** PP

                 HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHH.H CS
    Sugar_tr  60 iiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaai.f 157
                 ++Gs+++g++ d++G +ksl    +l + +    ++a+   +   ++v+ +l+Gig G    l+   +s ++ +++ g+  +l+ l + +   ++   f
  CCG92589.1 295 TLGSFIFGFFQDKLGSRKSLQLDLLLWIGCVSSLVFAE---TKTSFYVASFLIGIGNGSLLSLARAVMSLLSEEDKIGKHFGLWGLICRIATGIGPLsF 390
                 ********************998888877777788888...678888999*********9999999999999999999999999888766666654413 PP

                 HHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS- CS
    Sugar_tr 158 glglnktsnadgwrillglqlvpallllilllflP 192
                  + +  t++   ++ ++ l l+  +  +il+ flP
  CCG92589.1 391 SYLFIATNS---FKTPMLLPLFYFIGSFILVSFLP 422
                 444455555...67777777777777777777777 PP

>> Nuc_H_symport  Nucleoside H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  17.7   1.7e-05     0.051      50     306 ..      75     344 ..      33     394 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.7e-05
  Nuc_H_symport  50 ailspi...lvgiiaDkflsaervlavlhligavvlflaaqvtefealflvlLvyslaymPtlaltnsiafanlr.Dvvtdf.prirvlGtvGfil 140
                    ai+ p+   l++ ia + +    +++++ l+   +l+ + +  + ++  l++ +  + +  t  +  s     ++   v  f +  r +G +G i 
     CCG92589.1  75 AIFLPFigaLSDCIAKRKFLLGFFFVICILA--TALLGTTHEGDVWKSLLCYSLANISFSFTENIFSSFLPELIPpPSVGRFsGWTRAFGNIGGIF 168
                    4444431115667777777777777777664..55788888888877766666666666666666665555555563445562568*********9 PP

  Nuc_H_symport 141 aslaflllvv...sladlelsrlqlliaagvsllla...vyaltLPkiP..akkkakqslkkl..lgldafvLlknkrllvfflvslllavvlqiy 226
                    + l   +l+    + ++ el rl + i a++ ++ +    + l L k    +k+ a+  lk l  l   a+ + +nk ll++f  s+l+     i 
     CCG92589.1 169 SLLLVYPLLSpgfTVSNTELLRLCFPIVAAIYMMCGfplFFNLELQKKSthTKSFAQALLKILtdLKETALLIAHNKPLLLYFAASFLFFSAATIL 264
                    955544444411145666667777777777766554222356666655432455455545544115567888889**************9999999 PP

  Nuc_H_symport 227 yvfanafLtevakivvklasillslsqvaeilfiLtlpfflkrfGikkvlllslvaaalrfalfaygaddepvgvvlllL 306
                     ++   + +   +i + +  +++ l q   +l  ++++ff  ++G +k l l l+ ++   +  ++   ++ + v+  l+
     CCG92589.1 265 MIILAVYAQMEYGITGAQQVGIFLLIQAGGTLGSFIFGFFQDKLGSRKSLQLDLLLWIGCVSSLVFAETKTSFYVASFLI 344
                    9999999999999********************************************99888888876666665555554 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1   0.00022      0.67      64     133 ..      80     147 ..      57     153 .. 0.78
   2 ?    0.5   3.5     0.052   1.5e+02     204     309 ..     231     336 ..     191     360 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00022
       MFS_3  64 laGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvk 133
                 + Gal+D + +Rk+ll    ++ + ++ l  +++ g  ++w  l    l++i +++++  ++  ++el++
  CCG92589.1  80 FIGALSDCIAKRKFLLGFFFVICILATALLGTTHEG--DVWKSLLCYSLANISFSFTENIFSSFLPELIP 147
                 57***************9999999999887777766..67777777778888888888888888888775 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.052
       MFS_3 204 lealraglRftaasreikavlvRaalFglsasavlaLLPlvardqld.gdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllsl 301
                 l+ l++++   a  +++   ++ ++lF+ +a+  + +L + a+ + + ++a   Gi+l  + +G  lg+ +  +  ++l+s + ++l  +    ++ sl
  CCG92589.1 231 LTDLKETALLIAHNKPLLLYFAASFLFFSAATILMIILAVYAQMEYGiTGAQQVGIFLL-IQAGGTLGSFIFGFFQDKLGSRKSLQLDLLLWIGCVSSL 328
                 55555566666666667777777888888888888888888887765467888888764.455555666666666666666666655555555555555 PP

       MFS_3 302 alasslwv 309
                  +a+++  
  CCG92589.1 329 VFAETKTS 336
                 55444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 3172.09
//
Query:       CCG92590.1  [L=49]
Description: hypothetical protein MFUM_700144 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 396.10
//
Query:       CCG92591.1  [L=1075]
Description: putative silver efflux pump [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-253  843.8   5.0   1.9e-253  843.6   5.0    1.0  1  ACR_tran  AcrB/AcrD/AcrF family
  ------ inclusion threshold ------
        2.3    6.9  15.8        3.6    6.2   2.7    3.7  3  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  843.6   5.0  2.2e-257  1.9e-253       6    1020 ..      10    1038 ..       5    1039 .. 0.97

  Alignments for each domain:
  == domain 1  score: 843.6 bits;  conditional E-value: 2.2e-257
                  HTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS-HHHH CS
    ACR_tran    6 ikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtdidiA 102 
                  ++++ f+ ++ ++ l +G +   +l++da+P+i++++vq+ t +   +pe++e+ vt plE++ +g++gl++++S S+ g+s+itl+F+dgtdi+ A
  CCG92591.1   10 LSHKPFVYLVLFLYLSAGLYTATHLSIDAVPDISNVQVQIITPVRDFAPEEIEKLVTFPLERECSGIPGLEEMRSVSKFGISQITLVFKDGTDIYRA 106 
                  567778999999999********************************************************************************** PP

                  HHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEES.......SSSS.-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HH CS
    ACR_tran  103 rqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtsk.......dgsl.tktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpq 191 
                  rq   +rl  a++k+P+++  p++ +i+t+++e++v+a++ +       ++++ + +el+ ++e +ik+qL++v+GV++v++ Gg++k++ i++dp+
  CCG92591.1  107 RQLTGERLITAMDKIPQGL-VPRLGPISTGLGEVFVYALDWEkdhpnkpKNRMeELMELKLIQEYQIKPQLRMVPGVAEVNTLGGYDKEILIMPDPE 202 
                  *******************.*******************9988999988555515689*************************************** PP

                  HHHCTT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEE.ETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEEEEEE CS
    ACR_tran  192 klaklgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivk.nqdgskvrlrDvAkVelgaeeerlaatfngkpavllevkkl 287 
                  kl +lglt++d+++ + ++ +nv++ ++++ +e++++ra g+++   +ie + +k +   ++++++DvA+V+ ga+ + +aa +ngk+ vl++v ++
  CCG92591.1  203 KLMNLGLTVKDLSEIIGKNVENVGGAYIKRAGEQMTVRALGRVVDLPQIEILPIKySGWTKPLLVKDVAEVAVGAKIRVGAALVNGKEMVLGTVLMR 299 
                  *******************************************************777899************************************ PP

                  TTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BC CS
    ACR_tran  288 pganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslN 384 
                   gan ++v+++v +k+++++++lPegv+i+v+y+r+e++++ i++   +Lle+++Lv+l++f+ L +++a+li+  ++Pls l+++  + ++ +s N
  CCG92591.1  300 VGANGRTVSQKVFQKIQQIERQLPEGVKIEVLYNRSELIDQVIHTAFSNLLEGAILVALILFMILADWKASLIVSFIIPLSFLFAIYGMRLFHLSGN 396 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-H.........HHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  385 lltLfgLvlAiGlvvDdAiVvvEnierkleeegekp.........leaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlail 472 
                  l++L+++++  Gl+vD+A+++vEni rkl+e++ k             ++++++e++ +++ ++l+++ v++Pil+l+Gv Gk fr++a+t+++a++
  CCG92591.1  397 LMSLGAIDF--GLIVDGAVIMVENILRKLAESQSKLgsslskkdkELIVKETISEVGQSVLIGVLIITFVYVPILSLSGVAGKTFRPMAITVIFALI 491 
                  *********..********************44444789999985556889********************************************** PP

                  HHHHHHHCCHHHHHHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-ST CS
    ACR_tran  473 lsvlvaltltPalcallLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlpp 569 
                   s+l++ t++P+++a +L  +k       f++  r f+ +++ Y+++l++ l+h ++ + +al+++++ +l f +++  f+P++deg+  + + + +
  CCG92591.1  492 GSILFSFTFIPVISAAVLGRTKD------FQNHGRDFNLIKKIYRPFLRFTLNHGWLFVGMALLFFLIAILKFGSLGADFVPKLDEGSYDINIFREN 582 
                  *******************9998......55679*************************************************************** PP

                  TB-HHHHHHHHHHHHHHHH.TTTTEEEEEEEECECS.SE..ECCCEEEEEEEES-GCGS-SGGG...SHHHHHHHHHHHCT.TSTSSEEEEEETTSS CS
    ACR_tran  570 gvsleqtqkvlkqvekilk.ekpevesvfavtGfae.sgdtagpnsakvfisLkpekerkeeek...svealierlrkelk.kipganvellapiql 660 
                   + +e+   + k+ e++l   +pe+++v ++ G+a  ++d a+pn+ ++++ Lkp++e+++ +    s+e+l + +++e+k k+pg ++++++pi+ 
  CCG92591.1  583 TIGIEACVGMEKKTEEVLLqSFPEIRYVYSRIGMADiATDPASPNEPELYVILKPKSEWRKINGkpiSKEDLEDLMEEEIKlKVPGQAMIFSQPIEN 679 
                  ****************77669**************99**********************8765445578888888888887689************* PP

                  CCCSSSSCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEE CS
    ACR_tran  661 reletlsgvrselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrr 757 
                  r++ +l+gv++++++k+fg+d+ ++  ++eq+++ l ++ ++  +  e++   p l++ +dr ++a++ ++ s+in++++ a+gg+ v+++i++ rr
  CCG92591.1  680 RFNDMLQGVKADVAFKVFGSDYLTIYSLTEQIKKLLGNVRGVVGLAFETSGVAPSLEIIPDRLALAKYVIQSSEINEAVSGAIGGKTVGQLIDGVRR 776 
                  ************************************************************************************************* PP

                  EEEEEEE-GGGSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHH CS
    ACR_tran  758 vkvvvrleedlrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqa 854 
                  +++vvr  +++r+++++l +l++r+ +g +v ls+va+ ++e+   si+reng+r+++++ +++ +d+ s+++ea eki++ v++p+g+ +e +g  
  CCG92591.1  777 YDIVVRFSDAKRTNINALLSLPIRSGTGGIVSLSQVASASYENRLRSISRENGIRRIALLVDLERRDLESFVKEATEKINRLVHFPPGYFYEVGGLY 873 
                  ************************************************************************************************* PP

                  HHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCH CS
    ACR_tran  855 eqeqeasnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksl 951 
                   ++ ea+++l ++v+++ l++ ++L +l++++++ +++++++Pla++G++++l+l+ l++s+ a +G+i++ G+a + +++l+  ++ lr   g+ l
  CCG92591.1  874 RNFIEAKETLKVVVPMSSLAIMMLLYFLFKNFRHCFIVFFSIPLAITGGIFSLILAALPFSISAWIGFIAVSGVAILEGLVLIGAINRLRL-CGYPL 969 
                  *******************************************************************************************.9**** PP

                  HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  952 eeaileaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlv 1020
                  e+ai e+a+ RLrP+L Tal+a+lG++P+a+++g G+e+q+pl+ivv+gG+v+st+L L ++Pv+Y+ +
  CCG92591.1  970 EQAIEEGALIRLRPVLATALVASLGFFPMAFAHGPGAEVQRPLAIVVIGGIVSSTILDLVVLPVFYLWI 1038
                  ******************************************************************976 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0   0.00092       8.3     136     229 ..     260     364 ..     246     376 .. 0.80
   2 ?    6.2   2.7    0.0004       3.6     353     453 ..     423     517 ..     417     559 .. 0.76
   3 ?    2.7   1.1    0.0048        43     351     431 ..     842     932 ..     806     953 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.00092
     DUF2207 136 awlHg.ldgsttvkkddgsvtftarnlppgeglevrvlfpt.n.narktsgnkldeilkeeqk.........ntreraarlslallillilllilllll 222
                  w+ + l + + +++++ ++++ a  ++ +e +   vl+     n r+ s++  ++i+++e++            +++   ++++++++ ll  ++l++
  CCG92591.1 260 GWTKPlLVKDVAEVAVGAKIRVGAALVNGKEMVLGTVLM-RvGaNGRTVSQKVFQKIQQIERQlpegvkievLYNRSELIDQVIHTAFSNLLEGAILVA 357
                 566667666777777777777777777777777777777.333699**************************566889999999999999999999998 PP

     DUF2207 223 lllllik 229
                 l+l+ i 
  CCG92591.1 358 LILFMIL 364
                 8888875 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0004
     DUF2207 353 fkkalkkwksavkkkergyfdkkgkkklkklsalglgliilglilillallllvlllvfllilllillliaiivlllfsrllgrrteeGaellakwkgF 451
                 + ++ +k+ s++ kk ++++ k+  ++   + ++g+++i ++++ il + ++++   +  + +++i++li++i++ +   +++      a++l+++k F
  CCG92591.1 423 LAESQSKLGSSLSKKDKELIVKETISEVGQSVLIGVLIITFVYVPILSLSGVAGK-TFRPMAITVIFALIGSILFSFT--FIPV---ISAAVLGRTKDF 515
                 4555566667777799999999999999999999999988888877766666655.8888888888888888888885..5665...334555555555 PP

     DUF2207 452 kk 453
                 ++
  CCG92591.1 516 QN 517
                 55 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.0048
     DUF2207 351 kkfkkalkkwksavkk..............kergyfdkkgkkklkklsalglgliilglilillallllvll....lvfllilllillliaiivlllfs 431
                 + + +++k+ ++++++               +r+++++k     +   ++    + ++++l +l+      +    +vf++i+l i + i++++l+ + 
  CCG92591.1 842 RDLESFVKEATEKINRlvhfppgyfyevggLYRNFIEAK----ETLKVVVPMSSLAIMMLLYFLFKN----FrhcfIVFFSIPLAITGGIFSLILAALP 932
                 555555556666666666668888884444444444444....322222222222233333333322....2334477777777777777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1075 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 7065.51
//
Query:       CCG92592.1  [L=473]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.24   11.7   0.0        1.2    9.5   0.0    2.0  1  GGDEF_2   GGDEF-like domain


Domain annotation for each model (and alignments):
>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   6.5e-05       1.2       6      93 ..     191     371 ..     184     376 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 6.5e-05
     GGDEF_2   6 e.ellerarrlgldldgpyvvvviel......................................................................... 30 
                   e++++a+ l+l+l+ + + +v+                                                                           
  CCG92592.1 191 RsEIIQWAEKLDLRLNPRSLSLVVLGflalgmlifykrdtflslfqpkveiskvlekeeaklsssmpygwtlktalskeelffdysqllqkykehpssf 289
                 358999999999999988665444433789999999999999999999999999999888888888888888888888888888888887776665555 PP

     GGDEF_2  31 .ee....daerllraleealralgpdalvavrgdrlvlllpaedeedae.............allerlarrlgg.lsvriGi 93 
                  ++     +++ ++ +  ++ a + ++++a+  +  ++++p+e+ ++                l+++l++++++ +  ++  
  CCG92592.1 290 iQQlwnyWKDETAQIVCGQFTANRIEPVWAPFTGIMIVWVPTEATKKEGqtvelwtyletpaSLYQKLSQAFSKqFAPTVVF 371
                 52233345666888899999999999999************99986555566677777777777777777777654444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       976  (0.0544369); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3152.55
//
Query:       CCG92593.1  [L=194]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1245  (0.0694406); expected 358.6 (0.02)
Passed bias filter:                      956  (0.0533214); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1429.10
//
Query:       CCG92594.1  [L=151]
Description: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-22   79.6   0.6    2.4e-22   79.4   0.6    1.0  1  PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransf


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.6   1.3e-26   2.4e-22       2     142 ..       6     144 ..       5     146 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 1.3e-26
                 HHHCCGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTETCEE----SCCCBSS-EEEEEEEEEEEE-T-GC.C-CEEEEEEE CS
  PTS_EIIA_2   2 lltkelifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgigngvAiPHarleavkkpaiavlklkepvdfeasd.gkpvklifll 99 
                 +lt +++ ++l a +k eai ++a++l+++ + +  + +lea+le ek++ t++++ vA PH r++ vk+ +ia + ++ +v f   +    v+lif++
  CCG92594.1   6 VLTQDRVLVNLAARDKFEAITKVAKILEHSPMLESFDTFLEAVLEAEKLGMTWFEQEVAFPHIRSQVVKELVIAAGFFPSGVIFR--EaAPLVQLIFVI 102
                 588999***********************************************************99*****************9..33899******* PP

                 E-SSCHH..HHHHHHHHHHHHCSCCHHHHHHC--SHHHHHHHHC CS
  PTS_EIIA_2 100 alpekdae.hlkilaqLaellkdeefvekLrkakseeeilelle 142
                  +p+k +   + ++ +La+++    +++kL+kaks+ee+++l++
  CCG92594.1 103 GAPKKLNTnDIIVVGSLARIV--ATNRKKLLKAKSAEEFVSLIA 144
                 ******999***********7..56799************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1026.03
//
Query:       CCG92595.1  [L=90]
Description: hypothetical protein MFUM_700149 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 611.88
//
Query:       CCG92596.1  [L=283]
Description: hypothetical protein MFUM_700150 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-06   28.4   0.2    2.5e-06   27.3   0.2    1.5  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain


Domain annotation for each model (and alignments):
>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.2   1.4e-10   2.5e-06       6      60 ..     196     250 ..     193     255 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.4e-10
  OrfB_Zn_ribbon   6 eqleykakeyGikveevnpayTSktCseCgsknkealsgrtfkCpnCgfeadrDv 60 
                     e++e  a   G   e+v pa +S  C++Cg+++++++sg++f C++ g    +  
      CCG92596.1 196 ERIELLAPVGGSRREKVYPACSSELCPRCGYVHSKNRSGDKFMCRHRGDASYAES 250
                     577778888899999*****************************98666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 1842.48
//
Query:       CCG92597.1  [L=289]
Description: putative inorganic polyphosphate/ATP-NAD kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-50  170.6   0.0    1.4e-49  168.9   0.0    1.7  1  NAD_kinase  ATP-NAD kinase
    0.00024   20.7   0.0    0.00034   20.2   0.0    1.2  1  DAGK_cat    Diacylglycerol kinase catalytic domain


Domain annotation for each model (and alignments):
>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9   0.0   1.6e-53   1.4e-49      75     287 ..      55     262 ..       5     264 .. 0.94

  Alignments for each domain:
  == domain 1  score: 168.9 bits;  conditional E-value: 1.6e-53
                 TTTSSSEEEEEE-HHHHHHHHHHHHHCT-EEEEEESSS--SS-SEEGGGHHHHHHHHHHT-SEEEEEEEEEEEEEETTE......EEEEEEESSEEEEE CS
  NAD_kinase  75 adagvdliivvGGDGTaldvarllqkaeiPvlgvnaGvkgfltefepeaaaellekllegeirvekrevldavimrskgeediadiviensvlnevvii 173
                 + ++vdli+v+GGDGT+ ++a+++ +  +P+lgvn+G++gflt ++ e++  +l ++l+g++r + r+vl+av + + ++     ++  +  ln++v+ 
  CCG92597.1  55 FSEEVDLILVAGGDGTIIRIAHEIFPSPVPILGVNTGSLGFLTAVSREEILPQLPNILQGRFRKSPRMVLKAVGCAYGNN-----FE-IPCSLNDIVLF 147
                 4689*******************************************************************999999994.....44.5666******* PP

                 ESSSSS-EEEEEEETTEEEEEEEESEEEEE-TGGGGTHHHHTT--EE-TT---EEEEEESESSS----EEE-TT-EEEEEE-.SS--EEEEETTTEEEE CS
  NAD_kinase 174 rgpgstlielelyvdtelleadqldglivstPtGstayslsaGgplisPgvlailivpicPhslssrpiVvssssklrirva.srseallaldGseele 271
                 rg  s+++++++  +++l++++q+dgl+vstPtGstay+ls Ggp+i P+ + +++ picPh+l++r +V++++ +lr  ++  +  + l  dG    +
  CCG92597.1 148 RGAFSHMATIDVFAQGNLVTEFQSDGLVVSTPTGSTAYALSTGGPIIMPESEVFTLNPICPHTLTNRSLVFPEEVTLRFSIPlGGGPVRLEYDGIAYGD 246
                 ******************************************************************************9999999999999******** PP

                 E-TT-EEEEEEESSEE CS
  NAD_kinase 272 lspgdevrvtasdkkf 287
                 l pgd++++ as+kk+
  CCG92597.1 247 LHPGDWLEIEASPKKV 262
                 ************9985 PP

>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   3.8e-08   0.00034      17      92 ..      19      92 ..       5     113 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.8e-08
                HHHHHCHHHHHHCTCEEEEEE--STTHHHHH..HHHHHHCC-SEEEEEESHHHHHHHHHHHCTHHCTTSEEEEEE-SS CS
    DAGK_cat 17 kllrkvrelleeagvelelieteepgdakel..akeakeegvdlivvaGGDGtvsevlnglleelatkpplgiiPlGt 92
                +ll ++ e+++++++ + l + + +  +++   +++ +e +vdli+vaGGDGt+  +++ ++    +++p+  + +G+
  CCG92597.1 19 ELLLELVEYFNKEKIAFLLEDSTARLIGQRGisISRFSE-EVDLILVAGGDGTIIRIAHEIFP---SPVPILGVNTGS 92
                344567777888888777777774443333212556666.79*******************99...777766565555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2235.32
//
Query:       CCG92598.1  [L=303]
Description: Sugar kinase, ribokinase family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-48  163.6   0.0    7.5e-48  163.4   0.0    1.0  1  PfkB      pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.0   4.2e-52   7.5e-48       4     301 ..       3     282 ..       1     283 [. 0.92

  Alignments for each domain:
  == domain 1  score: 163.4 bits;  conditional E-value: 4.2e-52
                 EEEEEEEEEEEEEECSSH..TTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTT CS
        PfkB   4 vvviGealidliavsekl..egelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvded 100
                 v+ +G+ ++dl+ ++ek    +e + + ++    GG gaN Ava+ rlg+ +af+g vG D+fGe +lee+k egvdt+ v+  ++++t +a ++v+ d
  CCG92598.1   3 VLTVGHSCYDLSFYVEKDpkSDEKIFATDLIICGGGPGANAAVAVRRLGGTSAFCGYVGRDDFGEKILEEFKREGVDTSLVQ-RGNAPTPVACCFVKPD 100
                 789***************96666669****************************************************8888.8999************ PP

                 SEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEEEHHHHHHHHT CS
        PfkB 101 gertivfnrgaaadltkeeleededlleeadllyisgllsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkpneeElealtg 199
                 g+r ++++ + + +l+ e        l + +++ ++g        a+ +e  ++ak+++  +p +ld+ +  f e  + l + +d++ ++e+   + t+
  CCG92598.1 101 GQRAVINYKKSTPQLSGEGI---NTTLIKPKVILFDG-----HELAASQEFLKLAKKEK--IPTVLDAGS--FHEGTRVLAPEVDYVVASEKFVLQKTS 187
                 *****************876...77888889999998.....778999***********..******999..999999999**********98887777 PP

                 SCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSSSTC CS
        PfkB 200 ekledieealaalhklkakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqkkgaias 298
                 ++  + + a +++ k      k++v tlG++G  ++ +++e k++++p +++vDt+GAGD+f g+f  +l++g +++e l f + +Aal++++kga++s
  CCG92598.1 188 SN--NSQTAFEQVSK----EYKNFVLTLGEKGLMWKYQGQEGKMKSLP-ITAVDTNGAGDAFHGAFSLGLARGLDWKELLLFSTVTAALSCTRKGARTS 279
                 77..66666666666....349************************88.9************************************************9 PP

                 SCC CS
        PfkB 299 lpt 301
                  pt
  CCG92598.1 280 FPT 282
                 998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2369.34
//
Query:       CCG92599.1  [L=345]
Description: hypothetical protein MFUM_700154 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2565.15
//
Query:       CCG92600.1  [L=137]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-22   79.2   0.0    2.4e-22   79.0   0.0    1.1  1  DPBB_1    Lytic transglycolase


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   1.3e-26   2.4e-22       5      82 ..      37     118 ..      33     119 .. 0.93

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 1.3e-26
                 EEEE-.CCC-TTSSB--TTS-EEE-SSS-TT-EEEE..TT.--EEEEEEEE----STTECEEE-HHHHHHHT-TTTS-EEEE CS
      DPBB_1   5 sasly.kdgtacGecyevkcltaahktlplgtycrv..ls.gksvtVtitDrgpfppgrhiDLSkaAfeklakpraGvipVk 82 
                 +as+y ++ ta+Ge y+  +l+aahk+lplg+y+ v   +  k+v V+i+Drgp+++gr +DLSk+A+ +l++ + Gv++V+
  CCG92600.1  37 KASWYvDSLTASGEHYDFLALSAAHKSLPLGSYVVVknIRnHKTVLVRINDRGPYVAGRCLDLSKRAAWRLGMLKEGVVDVH 118
                 79***7777***************************763369**************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1093.72
//
Query:       CCG92601.1  [L=827]
Description: Outer membrane receptor protein, mostly Fe transport [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-11   43.1   1.2      3e-08   34.2   0.2    2.5  2  Plug      TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00039         7      12      42 ..      19      48 ..      16      61 .. 0.79
   2 !   34.2   0.2   1.7e-12     3e-08       3     107 ..      71     170 ..      69     171 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00039
                EEHHHHHHTTTSSHHHHHTTSTTEEEECCCC CS
        Plug 12 vtaediekqgatsladalqgvpgvnvsssgg 42
                ++   +++q+a+sl++a++++p v+v + ++
  CCG92601.1 19 FSNSLLQAQQASSLSEAVETLPEVTV-IASP 48
                567789*******************9.3333 PP

  == domain 2  score: 34.2 bits;  conditional E-value: 1.7e-12
                 GCCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGC.SSBGGGEEEEEEEESSCHCTT CS
        Plug   3 kdtpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpianggsgagdls.sidpedierievlkGpasaly 100
                  d+p  v vv++e++++ + +s++d+++  p+vn  ++ +g+  s+ ++RGl     + +++G+ +   +s++g++   +++++ +++++++Gp s  y
  CCG92601.1  71 IDIPRDVLVVSKEQLKTVMLQSVNDLMAFSPSVNP-TQATGNVVSEPVVRGL---PATAFRNGMLVG--FSSGGNWGpLLNVNADDSMDLVTGPVSLVY 163
                 588999****************************9.999*************...688899***874..4445554437899999************** PP

                 SSTGSSE CS
        Plug 101 GsdaigG 107
                 G +  +G
  CCG92601.1 164 GPQEFAG 170
                 *999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 5289.33
//
Query:       CCG92602.1  [L=318]
Description: SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-20   73.4   0.0    2.3e-20   72.9   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
      4e-20   72.2   0.0    6.4e-20   71.6   0.0    1.3  1  Methyltransf_11  Methyltransferase domain
    8.5e-19   68.1   0.0    1.4e-18   67.4   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    3.8e-12   46.8   0.0    6.1e-12   46.2   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
    5.2e-10   39.4   0.0    7.5e-10   38.9   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    9.3e-10   38.2   0.0    1.4e-09   37.7   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    5.4e-08   32.5   0.0    7.7e-08   31.9   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
    3.4e-07   30.3   0.0    3.1e-06   27.2   0.0    2.0  1  Methyltransf_8   Hypothetical methyltransferase
    1.3e-05   25.0   0.0    2.1e-05   24.4   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      6e-05   22.7   0.0    0.00011   21.8   0.0    1.4  1  MTS              Methyltransferase small domain
    0.00022   21.3   0.0    0.00033   20.7   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
    0.00024   20.6   0.0    0.00033   20.2   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0013   18.3   0.0     0.0043   16.5   0.0    1.8  2  Methyltransf_4   Putative methyltransferase
     0.0018   17.8   0.0     0.0027   17.2   0.0    1.2  1  Methyltransf_PK  AdoMet dependent proline di-methyltransferas
     0.0049   16.2   0.0     0.0071   15.7   0.0    1.2  1  Methyltransf_2   O-methyltransferase domain
     0.0057   16.4   0.0        2.9    7.5   0.0    2.2  2  N6_N4_Mtase      DNA methylase
     0.0062   16.5   0.0     0.0097   15.8   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
  ------ inclusion threshold ------
       0.15   10.9   0.1       0.24   10.3   0.1    1.4  1  Methyltransf_9   Protein of unknown function (DUF1698)


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   2.3e-23   2.3e-20       2     122 ..     143     261 ..     142     298 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 2.3e-23
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelae.elgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl..naladpdk 92 
                      +kg+ +lD+GCG+G+l+++la+ el ++ +++G Di +e +e+Ar ++ + g +   F   +  +++  l+d+++Dl++ ++vl   +  +   
       CCG92602.1 143 RKGKMILDVGCGSGRLAYALARsELAEQVHYIGMDIVPELLEYARDRCNRPGWE---FLFNNQYKFP--LADNSVDLVVFFSVLthLLEEEGFI 231
                      68899******************************************9999996...9999999999..99*************6444444556 PP

  Methyltransf_31  93 ileeiervlkpggilliedprllaelpakv 122
                      +l+e++rvlk++g++l+++ ++l+++ +k+
       CCG92602.1 232 FLKEAKRVLKKDGRILCSYLSILDDNHRKM 261
                      789******************888877443 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   6.4e-23   6.4e-20       1      96 []     149     248 ..     149     248 .. 0.94

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 6.4e-23
                      EEET-TTSHHHHHHH..HTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHE CS
  Methyltransf_11   1 LdvGcGtGrlaeala..krg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvL 88 
                      LdvGcG+Grla ala  + +   +++g+D+ +e+l++a+++ +++g   ef+  +  k+p++dns+Dlvv ++vl+h+  e+   +lke++RvL
       CCG92602.1 149 LDVGCGSGRLAYALArsELAeqVHYIGMDIVPELLEYARDRCNRPG--WEFLFNNQYKFPLADNSVDLVVFFSVLTHLleEEGFIFLKEAKRVL 240
                      8**************65333779***********************..79****************************9999999********* PP

                      EEEEEEEE CS
  Methyltransf_11  89 kpgGllvi 96 
                      k++G++++
       CCG92602.1 241 KKDGRILC 248
                      ****9975 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   1.4e-21   1.4e-18       1      97 []     148     244 ..     148     244 .. 0.92

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 1.4e-21
                      EEEET-TTSHHHHHHHCTS..TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl..gkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      +Ld+GcG+Grl+ ala+    ++ +++g+Di +e+le+ar r+  +++ +ef+  +  ++p++d+s+Dlvv + +l hl +e+   +lke++rv
       CCG92602.1 148 ILDVGCGSGRLAYALARSElaEQVHYIGMDIVPELLEYARDRC--NRPGWEFLFNNQYKFPLADNSVDLVVFFSVLTHLLEEEGFIFLKEAKRV 239
                      8***************9965559********************..6789***********************87788866677778******** PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      Lk++G
       CCG92602.1 240 LKKDG 244
                      ***99 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   6.1e-15   6.1e-12       1      99 []     149     246 ..     149     246 .. 0.87

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 6.1e-15
  Methyltransf_12   1 LeiGcGtGsllrallekl..pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnir 90 
                      L++GcG+G+l+ al+++   ++++y+g+Di p+ +e a+ + ++ + ++  n++++   ++     +s+Dlvv ++vl hl  ++   +l++++
       CCG92602.1 149 LDVGCGSGRLAYALARSElaEQVHYIGMDIVPELLEYARDRCNRPGWEFLFNNQYKFPLAD-----NSVDLVVFFSVLTHLleEEGFIFLKEAK 237
                      8***************999****************99999998887766555555544433.....3**************9888889****** PP

  Methyltransf_12  91 klLkpgGrl 99 
                      ++Lk++Gr+
       CCG92602.1 238 RVLKKDGRI 246
                      *******86 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   7.5e-13   7.5e-10      16     123 ..     135     254 ..     110     291 .. 0.77

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 7.5e-13
  Methyltransf_23  16 ll...pklraggrvLdiGcGtGillevlre....ngfsvtgvDlspeaveiae........kakkaqkdqfdeqeaaepqgkfdlIvlrevleh 94 
                      l+   +klr+g+ +Ld+GcG+G+l+  l++    ++++++g+D+ pe+ e a+        ++ ++++ +f     +  +++ dl+v + vl h
       CCG92602.1 135 LAiqwGKLRKGKMILDVGCGSGRLAYALARselaEQVHYIGMDIVPELLEYARdrcnrpgwEFLFNNQYKF-----PLADNSVDLVVFFSVLTH 223
                      444335699***************9999663333467**********999996666555333333333333.....44677************* PP

  Methyltransf_23  95 vpdpp..ellrqiatllkpgGylllseplas 123
                      +   +    l+ +++ lk +G++l+s+    
       CCG92602.1 224 LLEEEgfIFLKEAKRVLKKDGRILCSYLSIL 254
                      **7554489*****************96443 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   1.4e-12   1.4e-09      45     154 ..     142     251 ..     130     263 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.4e-12
                      S--TTEEEEES-TT-HHHHHHHHH.HHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HH..HH CS
  Ubie_methyltran  45 vkrgakvlDvagGtgDlafklsds.vgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDkl..ka 135
                       ++g+ +lDv +G+g la++l++s + e+ + +++Di +++L+ ++++ ++ g    efl  n  ++p  d+s D+v     l  + + +    
       CCG92602.1 142 LRKGKMILDVGCGSGRLAYALARSeLAEQVHYIGMDIVPELLEYARDRCNRPGW---EFLFNNQYKFPLADNSVDLVVFFSVLTHLLEEEgfIF 232
                      58999****************98636778899*******************997...8*****************9977666777766652257 PP

                      HHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 136 LkeayrvlkpGGrlvvlef 154
                      Lkea rvlk  Gr+++  +
       CCG92602.1 233 LKEAKRVLKKDGRILCSYL 251
                      9*************99655 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   7.8e-11   7.7e-08      52     175 ..     134     259 ..     127     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 7.8e-11
                 HHHHTTTT--TT-EEEEES-TTSHHHHHHHHH...H--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGTSGGGHHH CS
        CMAS  52 dlileklelkpGmtlLdiGcGWGslvrraver...ydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedldekvdrvvsvgafehvgkenydt 147
                 dl+++  +l++G+ +Ld+GcG G l+   ++     +v+ +g+ +  e  ++a++r+++ + e   + +  ++   d+ vd vv + ++ h+ +e+   
  CCG92602.1 134 DLAIQWGKLRKGKMILDVGCGSGRLAYALARSelaEQVHYIGMDIVPELLEYARDRCNRPGWEFLFNNQ-YKFPLADNSVDLVVFFSVLTHLLEEEGFI 231
                 77788889***************987665543111389***********************76655543.45667778********************* PP

                 HHHHHHHHS-TT-EEEEEEEEE--HHHH CS
        CMAS 148 ffkklkkllkedGllllhtitslhkkel 175
                 f k++k++lk+dG++l   + +l+ +++
  CCG92602.1 232 FLKEAKRVLKKDGRILCSYLSILDDNHR 259
                 ***************9987666655443 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   3.1e-09   3.1e-06      60     155 ..     133     247 ..     128     274 .. 0.68

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 3.1e-09
                     HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-.....EE..EEESS-..SSTTEEES-..........TTS-S--TT-EEEEEEE..S.---S CS
  Methyltransf_8  60 ldviirklkkkkdnlvvadlGcGeakiaeavrek...ekvr..sfdlva..vnervvacd..........lakvPledesvdvavfc..l.slmg 134
                     ld  i++ k +k++ ++ d+GcG  ++a a  ++   e+v+   +d+v+  ++     c+            k Pl+d+svd++vf   l  l+ 
      CCG92602.1 133 LDLAIQWGKLRKGK-MILDVGCGSGRLAYALARSelaEQVHyiGMDIVPelLEYARDRCNrpgweflfnnQYKFPLADNSVDLVVFFsvLtHLLE 226
                     56677777777765.689**********6554431226777225677653323333445422233221114689***********9522324677 PP

                     S-HHHHHHHHHHHEEEEEEEE CS
  Methyltransf_8 135 tnladflkeanrvlkvGGllk 155
                     ++   flkea+rvlk+ G + 
      CCG92602.1 227 EEGFIFLKEAKRVLKKDGRIL 247
                     88899**********999765 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.1e-08   2.1e-05      62     123 ..     133     195 ..      95     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.1e-08
                 HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHH.HCTTCEEEEEESBHHHHHHHHHHHHHCTT CS
        PCMT  62 valalellelkkgarvLevGsGsGyltavlarl.vgekgrvvsierikelveeakrnlkkldl 123
                   la+++ +l+kg+ +L+vG+GsG l+  lar  + e+ + ++++ ++el e a+ + ++ + 
  CCG92602.1 133 LDLAIQWGKLRKGKMILDVGCGSGRLAYALARSeLAEQVHYIGMDIVPELLEYARDRCNRPGW 195
                 557889999******************8888753888999***************99988765 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.1e-07   0.00011      31     137 ..     144     248 ..     129     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.1e-07
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEE..EESBHHHHHHHHHHHHHTTGCEEEEE-STTT.TSTTS-EEEEEE---STTTCHCHHHHHHHHHHHHH CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtl..vdvdarAlesakenleanklevevvasdvle.eveekkfdlivsNPPfhagkatelavaeeliaeAk 126
                 + + +lD+GcG G l+ ala+ +   +v+   +d+  + le a+  +++ + e  ++ ++ ++  ++++++dl+v    f   ++  ++    +++eAk
  CCG92602.1 144 KGKMILDVGCGSGRLAYALARSELAEQVHYigMDIVPELLEYARDRCNRPGWE--FLFNNQYKfPLADNSVDLVVF---FSVLTHLLEEEGFIFLKEAK 237
                 46679**************9987666655511788889999999999888875..4444444426778*******8...777777777888999***** PP

                 HHEEEEEEEEE CS
         MTS 127 eaLkegGeLli 137
                 ++Lk++G++l+
  CCG92602.1 238 RVLKKDGRILC 248
                 *******9987 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.3e-07   0.00033      24      75 ..     143     194 ..     126     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.3e-07
  Methyltransf_32  24 sgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklg 75 
                      ++ + ++DvG+G g L+ +la +e   +++ +g+d+  el e a++r ++ g
       CCG92602.1 143 RKGKMILDVGCGSGRLAYALARSELAEQVHYIGMDIVPELLEYARDRCNRPG 194
                      56789*****************88889*****************99988776 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   3.3e-07   0.00033     159     259 ..     142     249 ..     132     270 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.3e-07
        PrmA 159 vkegeevlDvGtGSGiLaia..aakLgak.kvvavDiDevAvkvakeNaelNkveaklevalseell.keekadviv.aNILaevlie....laedikk 248
                 +++g+ +lDvG+GSG La a   + L+ + + +++Di +  ++ a++  ++ + e  ++   + + + +++++d++v   +L + l e    +++++k+
  CCG92602.1 142 LRKGKMILDVGCGSGRLAYAlaRSELAEQvHYIGMDIVPELLEYARDRCNRPGWEFLFNN--QYKFPlADNSVDLVVfFSVLTHLLEEegfiFLKEAKR 238
                 68899************8661145565442678**************9988888877743..3333323588998773478888886445449999*** PP

        PrmA 249 lvkeggllilS 259
                 ++k++g++++S
  CCG92602.1 239 VLKKDGRILCS 249
                 ******99998 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.3e-06    0.0043       3      47 ..     146     192 ..     144     205 .. 0.85
   2 ?   -2.0   0.0       2.2   2.2e+03      99     114 ..     232     247 ..     231     249 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.3e-06
                     EEEEEET-TTSHHHHHHHHHS..TTSEEEEEES-HHHHHHHHHHHHH CS
  Methyltransf_4   3 pvvleiGcGkGeflvalAkkn..PdknflGiEirvkvvakvlkkiea 47 
                     +++l++GcG+G++  alA  +   ++ ++G++i  ++++++ ++ ++
      CCG92602.1 146 KMILDVGCGSGRLAYALARSElaEQVHYIGMDIVPELLEYARDRCNR 192
                     689**************9886325789************99998876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.2
                     HHHHHHHHEEEEEEEE CS
  Methyltransf_4  99 llkelarvLkkgGvle 114
                     +lke++rvLkk G + 
      CCG92602.1 232 FLKEAKRVLKKDGRIL 247
                     7999********9885 PP

>> Methyltransf_PK  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.8e-06    0.0027      51     158 ..     140     247 ..     126     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.8e-06
  Methyltransf_PK  51 pgkrevkvaldcGaGiGrvtknlLl.kllskvDlv..epvekflekakeelaeekkkvgkvyvvglq.eftPeegrYdliWiqWcvghLtDedl 140
                       + r+ k++ld+G+G Gr++  l   +l+++v  +  + v ++le a+++  +     g  +    q +f  ++++ dl+    +++hL +e+ 
       CCG92602.1 140 GKLRKGKMILDVGCGSGRLAYALARsELAEQVHYIgmDIVPELLEYARDRCNR----PGWEFLFNNQyKFPLADNSVDLVVFFSVLTHLLEEEG 229
                      4678899*************999751566777764338999999999966554....5544444444156667999****************** PP

  Methyltransf_PK 141 vaflkrckkalkpnGliv 158
                        flk +k+ lk++G i 
       CCG92602.1 230 FIFLKEAKRVLKKDGRIL 247
                      ***************885 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.1e-06    0.0071      49     165 ..     131     249 ..     114     270 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.1e-06
                     HHHHHHHHSS-GGG-SEEEEET-TTSHHHHHHHH..H-TT-EEEEEE-.HHHHHHHHHHS-----TTEEEEES-TTTS---..--SEEEEESSGG CS
  Methyltransf_2  49 lvakkvleafdleglkslvDvGGGtGalakaivs..ayPtikvivfDl.peVveaAkehlsageeervefvgGdffkdslP..eaDaillkrvlh 138
                     +  + +++  +l++ k+++DvG G+G la a ++  +  +++ i +D+ pe  e A+++    ++++ ef   + +k +l   + D++++ +vl 
      CCG92602.1 131 ILLDLAIQWGKLRKGKMILDVGCGSGRLAYALARseLAEQVHYIGMDIvPELLEYARDR---CNRPGWEFLFNNQYKFPLAdnSVDLVVFFSVLT 222
                     5566677777899999**********88887765216788999999*669*********...889999999999997777765779********* PP

                     GS-HHHHHHHHHHHHHH--TT-EEEEE CS
  Methyltransf_2 139 DwsdekcvklLkrvkkalpagGkvivv 165
                        +e+   +Lk+ k+ l+++G+++  
      CCG92602.1 223 HLLEEEGFIFLKEAKRVLKKDGRILCS 249
                     ************************975 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0029       2.9     190     229 ..     143     186 ..      91     188 .. 0.84
   2 !    6.9   0.0    0.0047       4.7      38      69 ..     232     263 ..     230     301 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0029
                  -TT-EEEETT-TTTHHHHHHHHTT-E....EEEEESSHHHHHHH CS
  N6_N4_Mtase 190 kkgdivlDpFaGSGtTavaakelgrk....fiGieieeeyvela 229
                  +kg+++lD  +GSG  a a ++ +      +iG++i +e +e a
   CCG92602.1 143 RKGKMILDVGCGSGRLAYALARSELAeqvhYIGMDIVPELLEYA 186
                  68*************987765433223366******99998876 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0047
                  HHHHHHHHEEEEEEEEEEE-CCCHHTHHHHHH CS
  N6_N4_Mtase  38 vlkevrrvLkddgsifiniddseikkelkala 69 
                  +lke++rvLk+dg i+++   +   + +k+++
   CCG92602.1 232 FLKEAKRVLKKDGRILCSYLSILDDNHRKMFI 263
                  689*************9988777777444444 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.8e-06    0.0097      12      62 ..     142     194 ..     135     216 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.8e-06
  Methyltransf_18  12 vekgsrvaDiGtDHgylpiylvkegkakkv..iasDinegplekakeniekag 62 
                      ++kg+ ++D+G+  g l+++l++++ a++v  i +Di ++ le a++ +++ g
       CCG92602.1 142 LRKGKMILDVGCGSGRLAYALARSELAEQVhyIGMDIVPELLEYARDRCNRPG 194
                      57899********************9998733689**********99988755 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00024      0.24     115     137 ..     144     166 ..     139     266 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00024
                     TT-EEEEET-TTSHHHHHHHHCT CS
  Methyltransf_9 115 kgrtildvGcgnGyhlwrmvgeg 137
                     kg++ildvGcg+G   + ++  +
      CCG92602.1 144 KGKMILDVGCGSGRLAYALARSE 166
                     79***********8777765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2335.61
//
Query:       CCG92603.1  [L=700]
Description: Putative glycosyl transferase, family 2 (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-46  156.4   0.1    1.2e-29  103.2   0.1    2.2  2  Glycos_transf_2  Glycosyl transferase family 2
    3.2e-24   86.1   0.0    1.1e-11   45.1   0.0    2.9  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    8.5e-13   48.4   0.4    3.3e-05   23.5   0.0    3.2  2  Glyco_tranf_2_2  Glycosyltransferase like family 2
    3.8e-11   43.3   0.0    2.9e-05   24.1   0.0    2.9  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    0.00012   21.6   0.0       0.55    9.7   0.0    3.4  3  Glyco_transf_21  Glycosyl transferase family 21
     0.0018   18.0   0.1     0.0044   16.7   0.1    1.6  1  Glyco_tranf_2_5  Glycosyltransferase like family


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.1   4.2e-33   1.2e-29       1     170 []     163     324 ..     163     324 .. 0.94
   2 !   51.2   0.0   4.1e-17   1.2e-13      11     170 .]     433     605 ..     423     605 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 4.2e-33
                      EEEEEESS-.TTTHHHHHHHHHHHGGCCEEEEEEEEES-.SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE CS
  Glycos_transf_2   1 svviptyNe.ektlletlesllaqdpypdfeiivvDDgS.tDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdep 92 
                      sv +p+yN  ek+l e++es+++q  yp++e+++ DD+S     + ile+++++dpr++v  re n   +++ n +l+ a g++i++lD+Dd  
       CCG92603.1 163 SVLMPVYNTpEKYLIESIESVRNQ-IYPHWELCISDDASsDPAIRRILEDYRRKDPRIKVTFRETNGHMSANSNSALELAEGEFIVLLDSDDLL 255
                      89**********************.*************977788************************************************** PP

                      -TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHCH CS
  Glycos_transf_2  93 dpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrealeell 170
                      +p  l  +ve++++ ++   ++  +  +++ de+ ++      + ++fk   + +   ++  i++  ++rr+++++++
       CCG92603.1 256 APHALYMVVEEINRFPE---VCILYSDEDKIDEKGKR------YSPFFKPDWNPDLFRSQNLISHLGVYRRDVVKKVG 324
                      **************666...77788888888888876......689****************************9985 PP

  == domain 2  score: 51.2 bits;  conditional E-value: 4.1e-17
                      TTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCH...C-TTEEEEEESSS-.HHHHHHHHHHHH--SSEEEEEESSEEE.-TTHHHH CS
  Glycos_transf_2  11 ktlletlesllaqdpypdfeiivvDDgStDetveileelak...edprvrvirreenv.GkagalnaglraatgdyilflDaDdep.dpdwlek 99 
                      ++++ ++es+l  ++y++fe+++v +g    t+  +  + +   ++ ++rv+  ++n   +++  n++++++++++i f+++D+e+ +pdwl +
       CCG92603.1 433 SLVKDCIESILFKTDYKNFELLIVVNGP-NCTRPEITTYLDhlqKRAQLRVLYDDQNAfNYSKLNNWAAEQVDSNIIGFINDDLEVlHPDWLTE 525
                      67899******99**************9.4455555555555779**************************************9873678**** PP

                      HHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS.........EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHCH CS
  Glycos_transf_2 100 lvealekdgadvvlgqrprifgetdeiernkrv.........generlyfkerkrslkgnlsfeigsaallrrealeell 170
                      lv+ + +++ ++v ++ ++  g   +    + v         g+   + ++  +  l++n+ +++  ++l+++e++ee++
       CCG92603.1 526 LVRQICRPEIAAVGAKLFYPHGTIQHAGVVLLVggvathrfsGFSREYSGYFSNALLQQNIGCVTAACMLIKKEVFEEVG 605
                      *******99999999999999999999999999*********9**********************************985 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.2e-12   3.6e-09       4     123 ..     162     279 ..     159     359 .. 0.79
   2 !   45.1   0.0   3.7e-15   1.1e-11       6     228 ..     424     660 ..     420     663 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.2e-12
  Glyco_tranf_2_3   4 lavlVptfneed.vlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDd 96 
                      ++vl p++n ++ +l e +es+ +q yp  e+++ +d s++ +++++ e   + +d r++v +++ n+     s + n al+ +++++++l+D+
       CCG92603.1 162 FSVLMPVYNTPEkYLIESIESVRNQIYPHWELCISDDASSDPAIRRILE-DYRRKDPRIKVTFRETNGH---MSANSNSALELAEGEFIVLLDS 251
                      89*******999899***********************99999888777.3444455788778877644...456779**************** PP

  Glyco_tranf_2_3  97 DtvvePdtlkrllqff.ltpkvgavgtp 123
                      D+++ P++l +++  + ++p+v +++ +
       CCG92603.1 252 DDLLAPHALYMVVEEInRFPEVCILYSD 279
                      ************9999888888777755 PP

  == domain 2  score: 45.1 bits;  conditional E-value: 3.7e-15
  Glyco_tranf_2_3   6 vlVptfneedvlgevlesll.aqeyprvevvvvvdesdaetle...vaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvD 95 
                      ++  ++  ++ + +++es+l + +y ++e+ +vv++  +   e    +++l++   ++++rv+ +++n   ++k +  n a ++v+s ++ +++
       CCG92603.1 424 LIMLSAFKHSLVKDCIESILfKTDYKNFELLIVVNGPNCTRPEittYLDHLQK---RAQLRVLYDDQNAFNYSKLN--NWAAEQVDSNIIGFIN 512
                      4444555669999*******8888**********9988775552212555433...6688999999999889**99..999************* PP

  Glyco_tranf_2_3  96 dDtvv.ePdtlkrllqffltpkvgavgtpvfllnrs..tl...........vsalgalefaerhlrflaarralgvltlnGsgslirrevlkel 175
                      dD  v +Pd l  l++++ +p+++avg++ f  +++  ++            +++g  + +  ++++ ++++ +g +  + +++li  ev++e 
       CCG92603.1 513 DDLEVlHPDWLTELVRQICRPEIAAVGAKLFYPHGTiqHAgvvllvggvatHRFSGFSREYSGYFSNALLQQNIGCV--TAACMLIKKEVFEEV 604
                      **9988************9************9888765446778888655433335555566666777777777755..47************* PP

  Glyco_tranf_2_3 176 egldp.lflltdDyelglrlrragfrtayvpgaavrevfpss..lkayikqrnRwv 228
                      +++d+ l++ + D++l+  l + g+ + + p+a+  + + +s   +a+ + +  w+
       CCG92603.1 605 GKFDEnLSIDFGDVDLCCKLISKGYWISWTPYAELIHHESKSrgRQASEHSKKEWI 660
                      *****777777*********************996666544434666666666665 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.1e-08   3.3e-05       1     202 [.     163     345 ..     163     365 .. 0.77
   2 !   20.4   0.1   9.8e-08   0.00029      17     199 ..     440     624 ..     424     644 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.1e-08
  Glyco_tranf_2_2   1 svviplraseerhyieervlqkakyydeeielivvddgSsekfleevssiidlnllv.ylkde.ddkayslaaarNrGaskaesdlvlFlDaDc 92 
                      sv++p+++  e+ y+ e +   +++  ++ el + dd Ss++ +  +    d + ++  +k +  ++    +a  N   + ae+++++ lD+D+
       CCG92603.1 163 SVLMPVYNTPEK-YLIESIESVRNQIYPHWELCISDDASSDPAIRRILE--DYRRKDpRIKVTfRETNGHMSANSNSALELAEGEFIVLLDSDD 253
                      799*******99.999***99999999***************7766532..333333322322023444567788******************* PP

  Glyco_tranf_2_2  93 fissDkfekilklitikklrenidaavvlpvvdlnkedsevlkdvedltassrvledllaakstlvkffapssssilinrraflevGGyDErfr 186
                      + ++  +  +++     ++++ ++  + ++  d ++e+ + +      + + +   dl+  ++ l       s   + +r  + +vGG+   + 
       CCG92603.1 254 LLAPHALYMVVE-----EINRFPEVCILYSDEDKIDEKGKRYSP----FFKPDWNPDLFRSQN-L------ISHLGVYRRDVVKKVGGFRIGY- 330
                      *****9999988.....999**********99999998876554....445555566666222.2......2455678888999999998777. PP

  Glyco_tranf_2_2 187 GhgaEDfdlllRlaka 202
                        ga D+dl lR+  +
       CCG92603.1 331 -EGAQDWDLALRVWEQ 345
                      .889999999998655 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 9.8e-08
  Glyco_tranf_2_2  17 ervlqkakyydeeielivvddgSsekfleevssiidl...nllvylkdeddkayslaaarNrGaskaesdlvlFlDaD.cfissDkfekilkli 106
                      e +l k+ y  +++el++v +g ++ +  e+ +  d+   + +  +   d++a+  ++  N  a++  s+++ F++ D     +D +  +++ i
       CCG92603.1 440 ESILFKTDY--KNFELLIVVNG-PNCTRPEITTYLDHlqkRAQLRVLYDDQNAFNYSKLNNWAAEQVDSNIIGFINDDlEVLHPDWLTELVRQI 530
                      456888888..99**9888776.44556788888776222444444455678***********************98845789*********77 PP

  Glyco_tranf_2_2 107 tikklrenidaavvlpvvdlnkedsevlkdvedltas.srvledlla.akstlvk.ffapss.ssilinrraflevGGyDErfrGhgaEDfdll 196
                         ++   + a + +p   + + +  vl  ++  t + s + ++    + ++l +  +   +   +li+++ f evG +DE++      D dl 
       CCG92603.1 531 CRPEIA-AVGAKLFYPHGTI-QHAGVVLLVGGVATHRfSGFSREYSGyFSNALLQqNIGCVTaACMLIKKEVFEEVGKFDENL-SIDFGDVDLC 621
                      777775.57899****8765.56666777777777662556666544155666654565555599*****************9.5566666766 PP

  Glyco_tranf_2_2 197 lRl 199
                       +l
       CCG92603.1 622 CKL 624
                      665 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.9e-06     0.012       2     127 ..     246     365 ..     245     395 .. 0.71
   2 !   24.1   0.0   9.7e-09   2.9e-05       9     142 ..     516     661 ..     507     686 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.9e-06
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaaelas.pevaivqgpvlvmnvanwleelaalf..faedhgkdilvrealgrvvpsvGsgaflrrsalqevggwdg 92 
                      i+llD+D++l p+ l+ +++e+ + pev      +l+    ++ e+ + +   f+ d++ d l+r+++     +  +  + rr+++++vgg++ 
       CCG92603.1 246 IVLLDSDDLLAPHALYMVVEEINRfPEVC-----ILYSDEDKIDEKGKRYSpfFKPDWNPD-LFRSQN-----LISHLGVYRRDVVKKVGGFR- 327
                      9*********************9658754.....444333444444444433389899998.666555.....46677789************. PP

  Glyco_trans_2_3  93 dessvsEDfdmglrlqrkG..yrvrfvpes.lvkeksp 127
                           + D+d++lr +++     +r++p++   ++ ++
       CCG92603.1 328 IGYEGAQDWDLALRVWEQVgdKAIRHIPYVlYHWRAVS 365
                      88999**********97765678899999953344443 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 9.7e-09
  Glyco_trans_2_3   9 tvlppdclreiaaelaspevaivqgpvlvm....nvanwleelaalffaedhgkdilvrealgrvvp.........svGsgaflrrsalqevgg 89 
                       vl+pd l e+++ + +pe+a+v  + ++     + a ++  +  +     h +++++re++g +           ++ +++++  ++++evg 
       CCG92603.1 516 EVLHPDWLTELVRQICRPEIAAVGAKLFYPhgtiQHAGVVLLVGGVA---THRFSGFSREYSGYFSNallqqnigcVTAACMLIKKEVFEEVGK 606
                      469******************99999998744453333333333333...3455555555544433344488888555788899********** PP

  Glyco_trans_2_3  90 wdgdessvsEDfdmglrlqrkGyrvrfvpes.lvkeksplt.lraalrQrkRway 142
                      +d + s    D d++++l +kGy++ + p++ l++ +s ++  +a    +k w+y
       CCG92603.1 607 FDENLSIDFGDVDLCCKLISKGYWISWTPYAeLIHHESKSRgRQASEHSKKEWIY 661
                      **99999999*********************977665555423333333333444 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0027         8      21      57 ..     233     269 ..     218     279 .. 0.87
   2 ?    1.4   0.0     0.065   1.9e+02     108     139 ..     315     345 ..     312     362 .. 0.83
   3 !    9.7   0.0   0.00018      0.55      10     120 ..     485     608 ..     476     612 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0027
  Glyco_transf_21  21 nllqaleaakydllvisDsdvrvkpdyLeellaaled 57 
                      n + ale a+ +++v++Dsd +++p++L  +++++ +
       CCG92603.1 233 NSNSALELAEGEFIVLLDSDDLLAPHALYMVVEEINR 269
                      77889999********************999998765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.065
  Glyco_transf_21 108 lrreaLeaiGGfealadeLAeDyalgkllraa 139
                      +rr++++++GGf+  ++e A D  l+ ++ ++
       CCG92603.1 315 YRRDVVKKVGGFRI-GYEGAQDWDLALRVWEQ 345
                      79**********85.99999999999999887 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00018
  Glyco_transf_21  10 gdpvgvnp.KvnnllqaleaakydllvisDsdvrvkpdyLeellaaledpkvglVts...lpvgsdakg.........laaaleaaflntlagv 90 
                      +d+ + n+ K+nn +   +   + +  i+D+  ++ pd L+el++++ +p+++ V +   +p g+ + +         +a++  + f   ++g+
       CCG92603.1 485 DDQNAFNYsKLNNWAAE-QVDSNIIGFINDDLEVLHPDWLTELVRQICRPEIAAVGAklfYPHGTIQ-HagvvllvggVATHRFSGFSREYSGY 576
                      55666665466555443.345555667889989999**************99999885433332222.22244432223333333333333444 PP

  Glyco_transf_21  91 lqakl..sglgfavGksmalrreaLeaiGGfe 120
                      ++ +l  + +g+++ ++m++++e++e++G f 
       CCG92603.1 577 FSNALlqQNIGCVTAACMLIKKEVFEEVGKFD 608
                      4442333599*******************997 PP

>> Glyco_tranf_2_5  Glycosyltransferase like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.5e-06    0.0044      44     183 ..     495     638 ..     483     671 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.5e-06
  Glyco_tranf_2_5  44 aynkalsasdakykvYlhqDvliinkdfikdlleiFkkdkkiGmiGvvGakslpesgvwweskk..kvgkvietskeeakelra..eeeeseye 133
                        n a+++ d ++  ++++D+ ++++d++++l+++    ++i     vGak +  +g++ +      vg v +++ + +++  +   +++   +
       CCG92603.1 495 LNNWAAEQVDSNIIGFINDDLEVLHPDWLTELVRQI-CRPEIAA---VGAKLFYPHGTIQHAGVvlLVGGVATHRFSGFSREYSgyFSNALLQQ 584
                      568899999***************************.9999876...56888888886663333358999999988877665555556666788 PP

  Glyco_tranf_2_5 134 eVeaidGllmatqydv.....pwredlftgfhfYdvsqslefekagykvvV.pnqe 183
                      ++ ++    m+++++v     +++e+     +f dv+ + ++ ++gy +   p+ e
       CCG92603.1 585 NIGCVTAACMLIKKEVfeevgKFDEN--LSIDFGDVDLCCKLISKGYWISWtPYAE 638
                      9*************************..5799***************886533333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 5019.51
//
Query:       CCG92604.1  [L=41]
Description: hypothetical protein MFUM_710001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 333.84
//
Query:       CCG92605.1  [L=407]
Description: Na+/H+ antiporter [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-42  143.1  37.6    1.3e-41  142.6  37.6    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6  37.6   7.5e-46   1.3e-41       3     379 ..      21     375 ..      19     378 .. 0.90

  Alignments for each domain:
  == domain 1  score: 142.6 bits;  conditional E-value: 7.5e-46
                     HHHHHHHHHHHHHHHTTSXHHHHHHHHHHHHTTTTTS.....HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   3 llillallvgllarrlklpeivgliiaGlllGpsglgliepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliGll 97 
                     l++  a+ + lla rlk+p+ +++i++G +l  + lgl +p+ e+ ++ls lg  +l F aG e++++++++ +k+ +  +l ++l+++++i+l+
      CCG92605.1  21 LWMGGAFSAALLAIRLKIPVALAEILMGAVLSHF-LGLSNPT-EWMNFLSKLGATMLCFIAGTEIEPEYFKESWKKNMFSGLSSFLFPFLAIALF 113
                     677778888899*******************855.9989999.**************************************************** PP

                     HH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHHHHHHHHHH CS
  Na_H_Exchanger  98 lylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllllliflvvavggll 192
                      ++  +l +  ++++++g++l +t+++++++ l e+g+ +++lg +ll+   ++D  +v++l ++         ++++l++++  ++ ++++++l
      CCG92605.1 114 SHY--LLHWKTAQCIIAGIALGTTSIAIIYTSLVERGIENSSLGKTLLSSCFITDFGSVLALGIFF--------THWDLSSIIFGII-ALIILWL 197
                     **8..6899*****************************************************9954........3455555544433.3445566 PP

                     HHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTT.HHHHHHHHHHHHHHHHHHHHHHHHSXHHHH CS
  Na_H_Exchanger 193 lglvigwllrlitrftdddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnk.lseklesfreglfnplfFvlvGlsldlkvl 286
                     +  ++ +ll+++ ++    +e e+ +v+l++ l+ +la++ + + +l af++G++ +++  + + l+ +l++++++++ p+fF+ +G ++ l++l
      CCG92605.1 198 FPKFLRFLLAFLKKS--PVSEPEIKFVFLMLSLLGFLATMAKTEPVLPAFVLGILSANSFSKDRlLRRRLRAVAYSILTPFFFMKSGFHISLHAL 290
                     677777777777777..89999***********************************777777757777************************** PP

                     HXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTTSSTTTCSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger 287 nnhlsvlilvllilvaillgrilavflllrllglslrealiigfgglqrgavalalaalgpalgllarelyallivvvlftvlvqGlslkpll 379
                        ++ ++ +ll++++ ++ ++ + f++l l ++s++e+l+ +++ ++ +++ l++a  g + ++l+re y+++++++l+++l     +++ll
      CCG92605.1 291 ---IFGFFPILLLTLIKTCFKLFGLFPYLILEKHSIKESLYGSLLATGGLTFGLIAAHYGIQNKILNREEYSIITIATLVSTL-----IPMLL 375
                     ...7777777777777779**********999***************************************************.....77666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 2986.41
//
Query:       CCG92606.1  [L=378]
Description: N-ethylmaleimide reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-86  291.3   0.0    1.2e-86  291.1   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.1   0.0   6.5e-91   1.2e-86       2     339 ..       7     342 ..       6     345 .. 0.91

  Alignments for each domain:
  == domain 1  score: 291.1 bits;  conditional E-value: 6.5e-91
                   CCS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEEE CS
  Oxidored_FMN   2 LFkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvvv 98 
                   LFkP+ +g+ t+ nRi mapmtr ra ++g v+++l+a+yy+qra+   +liitea+ ++++++g+   pgi+++ q e+wr ++eavh+ g+k+++
    CCG92606.1   7 LFKPLVVGEITVVNRIWMAPMTRCRAGQPGDVPTELMAKYYAQRAS--AGLIITEATQISKEGQGYIWTPGIYTDAQEEGWRRVVEAVHQAGGKIAL 101
                   9*********************************************..99*********************************************** PP

                   EEE--GGGS..SCSTCEC..SS.ESSSSSTTT-............S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH- CS
  Oxidored_FMN  99 qlwhlGreakseyladqevdspsdpvaldaqee...........esaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFls 184
                   qlwh Gr ++     +++ + p +p+ ++a+ +            +  + +++el+  ei+ +i e++ AAkra+ AgfD Veih anGYL+nqFl+
    CCG92606.1 102 QLWHVGRISHHL--LQEGGKPPVAPSPIQAKNSkcfvllpdgtpAQVDPDVPRELSIPEIHRIIGEYAAAAKRAMRAGFDLVEIHCANGYLPNQFLD 196
                   *******99543..34444578888888887667899**999998888888********************************************** PP

                   TTT----STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS-..-HHHHHHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTT.THHHC CS
  Oxidored_FMN 185 pksnkrtDeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekgl..dfaetaqkivllkelekrlkdgkklalvhaaeprkrga.gsvrt 278
                    + n+r D+ygGsl+nRarF+levvdaV ea+g+ rvg+RlSp++ + ++   +++et  ++++++el+kr +     a++h++ep   +a g+  t
    CCG92606.1 197 IRANQRKDQYGGSLQNRARFVLEVVDAVCEAIGNKRVGVRLSPKGIFCDMTveGSMET--NLYVASELGKRSI-----AYLHIVEPD--WAeGQPLT 284
                   ***********************************************98862256777..***********98.....999999954..44044444 PP

                   CTTHHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCT CS
  Oxidored_FMN 279 eqekntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkgl 339
                      ++ +  +e   + l+   +++ e  a+ + a g ad +a+gR f+a+pdl+e+ ++g 
    CCG92606.1 285 D--EERKAFRESFPNVLVFCSGYTAER-AESTIASGIADAIAFGRLFIANPDLPERFRRGA 342
                   4..577888888999999999999999.99**************************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2675.23
//
Query:       CCG92607.1  [L=223]
Description: Glutamine amidotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-36  125.8   0.0    2.6e-36  125.4   0.0    1.2  1  Peptidase_C26  Peptidase C26
    2.3e-12   47.1   0.1    6.9e-12   45.5   0.1    1.8  1  GATase         Glutamine amidotransferase class-I
  ------ inclusion threshold ------
      0.059   13.0   0.4          5    6.7   0.0    2.4  3  GATase_3       CobB/CobQ-like glutamine amidotransferase doma


Domain annotation for each model (and alignments):
>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   4.4e-40   2.6e-36      58     216 .]      53     206 ..      32     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 4.4e-40
  Peptidase_C26  58 kldgllltGgqdvePslygeepsekeee......adpeRdalelaLiraalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhrehe.qsa 146
                    + dgllltGg+d++ ++ ++ ++ + e+       + +Rd++e+aL++++l++g+P+l+iCrG+qlln+ lGG+l  +i+       h e+   ++
     CCG92607.1  53 EYDGLLLTGGEDISREYQEQYSNIDGEDpsqiisPNFQRDKWEFALLEQTLDKGKPVLCICRGIQLLNIFLGGSLSLNISG------HNEPIfYDQ 142
                    57**********99887766655544441111114569******************************************5......544443356 PP

  Peptidase_C26 147 ashavkvekgsllaellgseeievnslHhqaikelaeelrveAvae.DgviEaieseeakafvlgvQwHPE 216
                    + ++++vek+  ++        +vns Hhqaik++ae+l +eA+a+ Dg+iE +++++ + f +gvQ+HPE
     CCG92607.1 143 NLQELTVEKNATFQ------FQAVNSSHHQAIKRIAEGLSIEARAKyDGIIEQVRLKSYP-FCIGVQYHPE 206
                    67999999998875......4579**********************************88.*********9 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.1   1.1e-15   6.9e-12      47     176 ..      84     210 ..       9     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 1.1e-15
                 EEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEEEEEEEEEEETTT......CGGTTTTSEEEEEEEEEEEEESGCHHH CS
      GATase  47 lvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekehhggtmrlgddet......allyglknevierhrHryevnpkelep 139
                 ++s+ +   ++e   +++++ +++++P+L IC G Qll i +g+++  +      g++ ++  d++      ++     +   +  +H  ++++     
  CCG92607.1  84 IISPNFQRDKWE--FALLEQTLDKGKPVLCICRGIQLLNIFLGGSLSLNI----SGHNEPIFYDQNlqeltvEKNATF-QFQAVNSSHHQAIKR---IA 172
                 567777777665..4567888999********************998666....677888887777775553333333.666788899999999...9* PP

                 TTEEEEEEEETTEEEEEEEEETTT.EEEESSBTTSTTS CS
      GATase 140 aglevtakseddeelmeiiekknp.fvgvQFHPEstst 176
                 +gl + a+ + d+ ++ ++ k++p  +gvQ+HPE  + 
  CCG92607.1 173 EGLSIEARAKYDGIIEQVRLKSYPfCIGVQYHPERDLV 210
                 ************99999999999*9*********8765 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0    0.0054        32       7      55 ..      20      68 ..      17      78 .. 0.82
   2 ?    6.7   0.0   0.00084         5      68      88 ..      99     119 ..      86     126 .. 0.87
   3 ?   -3.5   0.0       1.1   6.6e+03      12      34 ..     139     162 ..     138     169 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0054
    GATase_3  7 lpaisnytdldpLeaepevrvrfvplkdeslgedadlvilpGgkdtiqd 55
                l++++n + +++L+ ++  +  +++l     ++++d ++l Gg+d  ++
  CCG92607.1 20 LNQLANTYSIQLLNIREHRQEVISKLYPIPSPKEYDGLLLTGGEDISRE 68
                6778888889999998888888888888889999*********997665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00084
    GATase_3  68 ikeaaeaggpvlgiCGGlqmL 88 
                 +++ + +g+pvl iC G q+L
  CCG92607.1  99 LEQTLDKGKPVLCICRGIQLL 119
                 678899*************99 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.1
    GATase_3  12 nyt.dldpLeaepevrvrfvplkd 34 
                 +y+ +l+ L  e++  ++f  ++ 
  CCG92607.1 139 FYDqNLQELTVEKNATFQFQAVNS 162
                 455788888888888887777554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1725.60
//
Query:       CCG92608.1  [L=666]
Description: Formate hydrogenlyase subunit 3 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-58  197.1  26.8    3.7e-58  197.1  26.8    2.6  3  Proton_antipo_M  Proton-conducting membrane transporter


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   1.0      0.14   2.5e+03      61     126 ..      25      85 ..       7     118 .. 0.54
   2 !  197.1  26.8   2.1e-62   3.7e-58       1     280 [.     125     412 ..     125     425 .. 0.92
   3 ?   -4.8   0.9      0.63   1.1e+04      48      61 ..     531     544 ..     529     549 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.14
  Proton_antipo_M  61 gtlefeelskalelglnslelllllllllvgllvKsaqvplhlWlpdayveaPtpvsallAatlvk 126
                      ++  f++ ++a    ++  +ll  l +ll g    s  +pl l +  a+ +  +  s +l  ++v+
       CCG92608.1  25 NNFRFTYWLSA---CYSGFGLLCSLSFLLSGQSSQSISFPLGLPTTGAHFKIDALASFFL--LIVN 85 
                      44444444444...4444444444444444444444444444444444444444444444..3444 PP

  == domain 2  score: 197.1 bits;  conditional E-value: 2.1e-62
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskalelglnslelllllllllvgllv 94 
                      a d +++ +++El++l++  L+    ++++++eA+++++l+ +lg ++LL++++l+ + + +  f+++ k+   +++   ++l++ll l+g+  
       CCG92608.1 125 AADAFSFLFFWELMSLSSWALVMSSHQHKETAEAGFIYILMASLGTFALLFALSLIAAPSKSYCFDQMGKV---NMDGKLASLIFLLALLGAGS 215
                      568899*****************************************************************...88888899999********* PP

  Proton_antipo_M  95 KsaqvplhlWlpdayveaPtpvsallAatlvkagvlllirllllla.vssneisqlllilaiismllgslvalaqtdiKrllAySsishlGyml 187
                      K+++vplh+Wlp+a+ +aP  vsal+++++ k++v+++ir+++ l  + ++++s+l+li+a is + g l al q diKrllAy +i  +G+++
       CCG92608.1 216 KAGLVPLHVWLPKAHPAAPSHVSALMSGVMTKVAVYGFIRIVFDLLpFQEKWWSILILIIAGISTVAGVLYALMQHDIKRLLAYHTIENIGIVF 309
                      ******************************************999989********************************************** PP

  Proton_antipo_M 188 ialav...........atqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfl 270
                      i++++           a++ +++aa++h l h++fk llFl +g++ ++ +++rd++++ggL   mP +a ++l++ +++++lPp+ gF+s++l
       CCG92608.1 310 IGIGLsmafkiygmtaASALAMTAALFHALNHSIFKNLLFLGSGAI-QSATDQRDMEKLGGLILNMPHTAFTFLIGSVAISALPPLNGFVSEWL 402
                      9986543333333222455678999******************777.6677******************************************* PP

  Proton_antipo_M 271 iLeaavavsl 280
                      +++++++  +
       CCG92608.1 403 LMQSILQSPQ 412
                      ****998755 PP

  == domain 3  score: -4.8 bits;  conditional E-value: 0.63
  Proton_antipo_M  48 iLLlgilllynltg 61 
                      +LLlgi+l++ lt+
       CCG92608.1 531 VLLLGIFLFFILTS 544
                      68999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       972  (0.0542138); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 4351.01
//
Query:       CCG92609.1  [L=316]
Description: Formate hydrogenlyase subunit 4 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-36  124.4  24.5    7.1e-36  124.0  24.5    1.0  1  NADHdh    NADH dehydrogenase


Domain annotation for each model (and alignments):
>> NADHdh  NADH dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0  24.5     4e-40   7.1e-36       9     297 ..      13     310 ..       6     312 .. 0.88

  Alignments for each domain:
  == domain 1  score: 124.0 bits;  conditional E-value: 4e-40
                 HHHHHHH.HHHHHHHHHHHHHTTS--S-SSTTTTTTHHHHHHHHHCCS-----TTS-HHHHHHHHHHHHHHHHCTTTTS-SSS..SSS--TTHHHHHHH CS
      NADHdh   9 vlllvva.lltlleRkvlAriqdRlGPnrvGplGllqplaDalKlllKediipkkadkllfllapvlalilallafaviPfge..vladlnvglllila 104
                 +lll+v  l++++ Rk+ Ar+  + GP      +llqp++D++Kl+ Ke ++p++a ++lf+++p+++++++ la  ++P  +   l    ++l+ i+a
  CCG92609.1  13 FLLLAVSpLVIGIIRKTKARFLLKQGP------SLLQPYYDLMKLFRKEVTLPDSA-SWLFKATPYVVFTFSWLAASLVPTFSanLLFSRTADLIAIVA 104
                 57888889*******************......********************999.8**********************774346666688******* PP

                 HHHHCHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-HHHHHHCCCTT..-C.CCCHHHHHHHHHHHHHHCCTCTTBTTTTS CS
      NADHdh 105 lsslgvygillaGwasnskYallGalRsaaqmisyEvalglsllavvllagslslseiveaqeei..wf.illqllafiifliallaetnraPFDlpea 200
                 l+  + +++ la+++++  +  lG+ R++ +    E a+++++++++l+a+s++ls i +   ++   + + l +la+  ++++++ae +r+P D p  
  CCG92609.1 105 LLGTARFFLSLAALDAGTSFGGLGSSRESLIASLAEPAMIMIIFTIALVAKSTDLSAISTFMISGqaGLrVSL-WLALASLVLVAIAENGRIPVDNPAT 202
                 **********************************************************754433322233444.89999999***************** PP

                 TTSS...SSCCCTT-HCHHHHHHHHHHHHHHHHHHHHHHHHCT..SS-HCCS.......HHHHHHHHHHHHHHHHHHHHHC----TCHHHHHHHCCTCH CS
      NADHdh 201 esEL...vaGfhtEYsgmkfalfflaeyanmvlvsalavllFl.gGwllpfs.......gllwfllKvllllflfiwiratlpRlRydqlmklgwkvll 288
                 + EL    +++  EYsg  +al+  a+ +++vl+ +l++++F+  G+++ ++       gl+ +++K+ l  +++ +++  ++++R+ ++ ++    ++
  CCG92609.1 203 HLELtmiHEAMILEYSGKYLALLEAASQLKIVLYLSLVAAVFFpFGMSTMVGgissffiGLFTYIAKIGLGAIMLGFFEILVAKMRLFKIPNFLGAAFM 301
                 ***9666789**********************998888888872454444447888888*********************************9887777 PP

                 HHHHHHHHH CS
      NADHdh 289 plalanlll 297
                    la +ll
  CCG92609.1 302 LALLATVLL 310
                 666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2165.93
//
Query:       CCG92610.1  [L=220]
Description: Formate hydrogenlyase membrane component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1669.49
//
Query:       CCG92611.1  [L=492]
Description: Hydrogenase-4 component F homolog [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-54  185.2  28.0    1.6e-54  185.2  28.0    1.9  2  Proton_antipo_M  Proton-conducting membrane transporter
    0.00018   21.5   0.4     0.0013   18.7   0.3    2.5  2  Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), 


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   1.1      0.34     3e+03     148     159 ..      47      58 ..      20      97 .. 0.54
   2 !  185.2  28.0   1.7e-58   1.6e-54       1     290 [.     133     429 ..     133     432 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.34
  Proton_antipo_M 148 qlllilaiisml 159
                       l+ +l+++s l
       CCG92611.1  47 ALFSFLSFASSL 58 
                      333333332222 PP

  == domain 2  score: 185.2 bits;  conditional E-value: 1.7e-58
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskal.......elglnslelllllll 87 
                      +n++ l+++++E+  l+++l++g++++  ++leAs k+f+l+ +g  + L+g +l+y  +     e ls ++         +l+ + +++++++
       CCG92611.1 133 SNNIGLMWVAIEIATLSTVLMVGIYRTA-EALEASWKYFILGGVGIALALFGTFLFYISARPAIGEGLSAMAwtnllshASTLDTSLVNIAFVF 225
                      78999********************777.****************************998855555555555666667689999********** PP

  Proton_antipo_M  88 llvgllvKsaqvplhlWlpdayveaPtpvsallAatlvkagvlllirllllla..vssneisqlllilaiismllgslvalaqtdiKrllAySs 179
                      +l+g  +K++++plh Wlpda+ e+Ptp+sa l+++l+++++++++r+ +lla    + ++  ll+ ++++s+l+++l+  + +diKrl AySs
       CCG92611.1 226 ILLGYGTKAGLFPLHAWLPDAHAEGPTPISAVLSGLLLNVALYAILRFKMLLAanPHALQAGPLLMSMGLASVLFAALMLYKRRDIKRLFAYSS 319
                      ***************************************************9966677778889****************************** PP

  Proton_antipo_M 180 ishlGymlialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLe 273
                      i h+G++  a++++++ +  a ++h+ +h+l+k+++F ++g  i++ ++t++i++++gL  + P+l + l++++l++aGlPp+  F+s+fl+L+
       CCG92611.1 320 IEHMGIIAFAFGIGGALANFAGLLHMSMHSLTKSAIFFAIGY-ISQIKRTQKIADLSGLTASHPVLGWGLVFGVLAIAGLPPMGVFMSEFLVLS 412
                      ****************************************55.58899********************************************** PP

  Proton_antipo_M 274 aavavslillvlavvas 290
                      +a+a  ++l++l+ ++ 
       CCG92611.1 413 SAFAKAPLLAALLACGL 429
                      ****9999999887665 PP

>> Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.3   1.5e-07    0.0013      16      48 ..      71     103 ..      66     119 .. 0.85
   2 ?   -2.1   0.0      0.48   4.3e+03      37      46 ..     355     364 ..     350     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.5e-07
  Proton_antipo_N  16 fllDklsalmllvvtfvsllvhlYSigYMadde 48 
                      f +D+l ++++l+  fv++   l+S  Y a++ 
       CCG92611.1  71 FVVDELNIVFILLTNFVGFTTALFSQNYIAHEI 103
                      89****************************984 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.48
  Proton_antipo_N  37 hlYSigYMad 46 
                      ++++igY ++
       CCG92611.1 355 IFFAIGYISQ 364
                      5799***875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3378.35
//
Query:       CCG92612.1  [L=510]
Description: putative formate hydrogenlyase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-38  132.5   0.0    7.2e-33  113.8   0.0    2.2  2  Complex1_49kDa   Respiratory-chain NADH dehydrogenase, 49 Kd 
    1.6e-07   32.0   0.0    2.9e-07   31.1   0.0    1.4  1  Complex1_30kDa   Respiratory-chain NADH dehydrogenase, 30 Kd 
    1.1e-05   24.6   0.0     0.0049   15.8   0.0    2.2  2  NiFeSe_Hases     Nickel-dependent hydrogenase
  ------ inclusion threshold ------
       0.14   12.0   0.1       0.29   11.1   0.1    1.5  1  B_solenoid_ydck  Beta solenoid repeat from YDCK


Domain annotation for each model (and alignments):
>> Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   1.6e-36   7.2e-33      14     166 ..     281     433 ..     273     441 .. 0.96
   2 !   16.9   0.0   5.9e-07    0.0026     201     267 ..     441     506 ..     433     509 .. 0.88

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 1.6e-36
                     HHHHHHHHHHHHHSSSSS-TTBESSBBSS---TTHHHHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHSSSS-BSHHHHHHHTT-SSSSGGGT-TT CS
  Complex1_49kDa  14 eRekildlleevtGaRltasyiriGGvarDlpegllekikeflkelekkldeleklltknrifkkRtkgvgvlskeealelgltGpvlRasGvky 108
                      Rekil++ +++ G Rl++  i +GG++ Dl+++  e++  +lke++++l ++++ +++ + +++Rt+g gvl+++ a  +g+ G + RasG ++
      CCG92612.1 281 LREKILRFSKDFFGHRLMMGRIVPGGLNVDLSKEGKENLCLLLKEIKEELYSIKNFYDSKNSLQDRTVGTGVLNARAAKLFGAGGFIGRASGRNF 375
                     6********************************************************************************************** PP

                     THHHHSS-SSGGGS-------SSBSHHHHHHHHHHHHHHHHHHHHHHHHT--.S-SB- CS
  Complex1_49kDa 109 DlRkaepYeaYdeldfdvpvgeegDvydRylvrveEmrqSlkIieqaleklpegpvla 166
                     D Rk   Y  Yd+l+f+ p+ e+gDv +R+++r+ E++qS  +ieq+l++lp+g++l+
      CCG92612.1 376 DARKCFAYPPYDKLSFESPLLEAGDVNARVWIRILEIEQSSLLIEQILNNLPSGSILS 433
                     ******************************************************9876 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 5.9e-07
                     SEEEEEEEEETTEEEEEEEEEESSSS-SEEEEE-HHHHTTTTHHHHTTTS-SGGGTHHHHTT---HH CS
  Complex1_49kDa 201 kgevyaavEapkGelgvylvsdgsskpyrlkirapsfvnlqaleellkgellaDvvailgsldivlg 267
                     +g+ +a vE+ +G + + +  + + k  r++ r+ps+ +   le+++ g+++aD++ +  s+++  +
      CCG92612.1 441 SGQGLAVVESFRGDILLWIEIE-KGKIRRCHPRDPSWFQWPLLEKVIVGAVVADFPLCNKSFNCSYS 506
                     5888999**********99886.77889****************************99999987665 PP

>> Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   6.5e-11   2.9e-07      41     112 ..      62     132 ..      32     141 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 6.5e-11
                     EEEEEE--..S-.-EEEEEE....-S-BEE--TTT-STHHHHHHHHHHHSHHBCTTSSTSS-SSSSTTS.SS-TT CS
  Complex1_30kDa  41 vvyhllsl..eknerirvkvevdeeepevpSvtdlfpgadwyEREayDmfGivfeghpdlrrillpedf.eghPL 112
                     v ++ll    +k + i +++ +     ++pSv+  +p+a ++ER ++D+fG+  eg  d r +l + ++   +PL
      CCG92612.1  62 VNMVLLDEsqSKLQVIELETPL----GKFPSVAIEIPSAARLERTIHDLFGLIPEGSFDNRPWLDHGKWqLRYPL 132
                     4444443311444667777733....679************************************9999444576 PP

>> NiFeSe_Hases  Nickel-dependent hydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.1e-06    0.0049       2      66 ..     194     258 ..     193     260 .. 0.95
   2 !    6.6   0.0   0.00071       3.2     393     448 ..     419     468 ..     397     477 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.1e-06
                   -HHHHTTTS-GGGHHHHHHTT-SSSTTHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHH CS
  NiFeSe_Hases   2 GlElilkgrdprdawalvqRiCGVCttvHalasvravedAlgikipknarlirnliaaalllhdh 66 
                   G+E++  +   +  + ++ Ri G  t++ + a + ave+A+g++++  a  +r l+a ++ + +h
    CCG92612.1 194 GIEKLFFEASIERGAEIAARISGDATVAYSYAYALAVEEAMGVTPSPRAVWLRALMAEMERMANH 258
                   999999999999999*******************************************9999988 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00071
                   HHHHHHHHHTTB---B--TT-SGGGS-S.EEEEEEEEEETTEEEEEEEEEETTEEEE CS
  NiFeSe_Hases 393 ldelvenikkgdtetaneekldkkevpk.eakGvglveapRGaLsHwikikdgkien 448
                   ++++ +n+ +g  ++++       + pk + +G+++ve  RG +  wi+i++gki++
    CCG92612.1 419 IEQILNNLPSG--SILSVI-----KEPKvSGQGLAVVESFRGDILLWIEIEKGKIRR 468
                   55555555555..222222.....22433689***********************85 PP

>> B_solenoid_ydck  Beta solenoid repeat from YDCK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   6.4e-05      0.29       1      12 [.     212     223 ..     212     224 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.4e-05
  B_solenoid_ydck   1 AQIyGnAtVqhs 12 
                      A+I+G+AtV +s
       CCG92612.1 212 ARISGDATVAYS 223
                      9********887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3616.19
//
Query:       CCG92613.1  [L=178]
Description: Formate hydrogenlyase subunit 7 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-27   94.5   0.1    5.6e-27   94.1   0.1    1.1  1  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.1   3.1e-31   5.6e-27       1     129 [.      63     173 ..      63     175 .. 0.94

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 3.1e-31
                  -SHHHHHHT-TTTTHHHHHHTEEEEEETTT-S--HHHHHHTHTTTSEEEEEESBE...EEEHHHHHHHHGGGSSEEEEESHHHHH-TGGGSTT-TEE- CS
  Oxidored_q6   1 CtGcsisllaleedlldllelielryhetlladskeeeieakekeadvlvveGavtrkpkealellkelaekakaviavGtCAafGGipaaannpsvg 98 
                  C+Gc++++ al+++++d+     +r++++++a+++         +ad+l+v+G+vt+++ eal++++++++ +k+v+avG+CAa  G++  +++++v+
   CCG92613.1  63 CNGCELEIHALNNPFYDI-----ERFGIRFVASPR---------HADLLLVTGPVTKNMIEALKRTYDCTPIPKWVVAVGDCAAGCGVF--KQSYAVM 144
                  ******************.....************.........*********************************************..6634555 PP

                  HHHHHHHC.S-E.EEE-SSS--HHHHHHHHH CS
  Oxidored_q6  99 eevgellevvpvdinipGCPphpeailetll 129
                     g++++vvpvd+ i GCPp+p ++l++l 
   CCG92613.1 145 --NGGVSDVVPVDLWIYGCPPSPIDLLRGLI 173
                  ..78*********************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1284.30
//
Query:       CCG92614.1  [L=58]
Description: hypothetical protein MFUM_710011 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       147  (0.00819901); expected 358.6 (0.02)
Passed bias filter:                      136  (0.00758548); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 448.30
//
Query:       CCG92615.1  [L=413]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-45  155.1   0.2    3.1e-45  154.8   0.2    1.1  1  NTP_transf_5  Uncharacterised nucleotidyltransferase


Domain annotation for each model (and alignments):
>> NTP_transf_5  Uncharacterised nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.8   0.2   1.7e-49   3.1e-45       2     250 .]      45     304 ..      44     304 .. 0.91

  Alignments for each domain:
  == domain 1  score: 154.8 bits;  conditional E-value: 1.7e-49
  NTP_transf_5   2 eadwerllrlarrhrvlpllykslkrlgleqlppeellrrlksayqaiakrnllllaeleellalleeegipvllLKGpalaq.lYpdpalRemgDi 97 
                   ++dw+++++ + +h + p++y++lk+    ++p  ++  +++  ++ i krn lll+e++++l l+ ++gi+++ LKG+ l q lY+d + ++++Di
    CCG92615.1  45 DFDWDQFFNFSFQHSLWPIVYNKLKNDFPFLIPL-DIDLKFRLLCKHISKRNSLLLDEFKKILFLFHDNGIQTISLKGLDLCQrLYEDFFSKTVTDI 140
                   79**************************766666.9**********************************************99************* PP

  NTP_transf_5  98 DllvkredldraeelL.eelGyelesdgsek...............hevyyrekkgveielhwrllppesprlepdfddlleerarpveiggksilv 178
                   Dllv+  d+++a  lL ++lGy ++ + s +               ++ ++ ++ +   elhw      +  l+++f +  ++++    ++g +++ 
    CCG92615.1 141 DLLVPTSDIQKAIVLLrSKLGYYPHNP-SSYklsslffwdkdltllTKKFEEDQAPSICELHWAPCF--NGVLDKKFLESTWKESSMSAFEGIPLQR 234
                   ****************8899******9.555565555555556666666666699999******995..57999999999999899999******** PP

  NTP_transf_5 179 lspedlllylalHlakhfwnrglgLrwlvDiaallrk.lkdeldweallararelglrralllaltlakellg 250
                   +  e+++l+l++H+ kh+w++   L +l+D+++++   +  + dwe+++++a ++g+ r++ll+++l k +++
    CCG92615.1 235 MPKENEFLFLLAHGGKHRWEK---LSYLLDLHQFILWaNFSQQDWERVIEKAFRFGWSRFCLLGIALSKNYYN 304
                   *******************86...*********965546799**************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2800.09
//
Query:       CCG92616.1  [L=114]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 835.90
//
Query:       CCG92617.1  [L=130]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1008.16
//
Query:       CCG92618.1  [L=63]
Description: hypothetical protein MFUM_710015 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.55
# Mc/sec: 347.18
//
Query:       CCG92619.1  [L=129]
Description: hypothetical protein MFUM_710016 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 878.19
//
Query:       CCG92620.1  [L=155]
Description: Serine kinase of the HPr protein, regulates carbohydrate metabolism (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.068   12.7   0.0      0.097   12.2   0.0    1.2  1  Hpr_kinase_C  HPr Serine kinase C-terminal domain


Domain annotation for each model (and alignments):
>> Hpr_kinase_C  HPr Serine kinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.4e-06     0.097      24      67 ..       4      47 ..       1      57 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.4e-06
                  EESTCHHHHHHHHHHHTTT-EEEEESSEEEEEETTE.EEEEE-T CS
  Hpr_kinase_C 24 tGesgvGKselaleLikrghrLvaDDaveikridektlvGrape 67
                  + +sg GKs l   ++  g++LvaDD++ +  ++e+ lv  ++ 
    CCG92620.1  4 VASSGGGKSTLLSAFLDLGYNLVADDRIGFVLEAEEPLVVPSHP 47
                  568999**********************9988888877765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1166.34
//
Query:       CCG92621.1  [L=338]
Description: Radical SAM superfamily enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-05   24.5   0.0    5.5e-05   23.6   0.0    1.4  1  Radical_SAM  Radical SAM superfamily
    8.4e-05   23.0   0.2     0.0006   20.3   0.0    2.4  2  SPASM        Iron-sulfur cluster-binding domain
    0.00069   19.9   0.1     0.0013   19.0   0.1    1.4  1  Fer4_12      4Fe-4S single cluster domain
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.24   11.5   0.0    1.5  1  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.2e-08   5.5e-05       6     110 ..      14     116 ..      11     134 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.2e-08
                  EESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHG.....HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxx RF
  Radical_SAM   6 gCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpd.....eeklerll 98 
                   C+l+C +C++ ++ + eg  ++  v +ilee+  l     + +v ++gge +l++++       ak    g+r+t +t  ++++       ++e+ +
   CCG92621.1  14 KCPLACAHCITDSSPQAEGMLEESFVFSILEEAVGL-----TPVVSFTGGEAFLNSEILIRCILKAKA--LGFRVTAVTGCGWVRtekhaFLVIEAVK 104
                  6***********965555555555555555555444.....9**************998888888888..7************999888888899999 PP

                  HTT-SEEEEEEB CS
                  xxxxxxxxxxxx RF
  Radical_SAM  99 elgvdrvslgle 110
                  ++g+dr+ ++ +
   CCG92621.1 105 KAGLDRLCISWD 116
                  999999988766 PP

>> SPASM  Iron-sulfur cluster-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.3e-07    0.0006       9      44 ..     207     244 ..     200     291 .. 0.82
   2 ?   -0.5   0.5       0.4   1.8e+03      54      67 ..     323     336 ..     290     337 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.3e-07
       SPASM   9 fInsdGdVvpCcvd..kktyvee...lklGnireesleeIw 44 
                 ++++dG V+ Cc +  +         l+lG+ r++sl+eI+
  CCG92621.1 207 VVEYDGRVFACCGPshYAG---HhspLVLGDARRKSLREIL 244
                 89**********9944333...3356**************8 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.4
       SPASM  54 kskkfplielCrnC 67 
                 k++ + + + C++C
  CCG92621.1 323 KKFTEVNKKECHSC 336
                 24445556679999 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   2.9e-07    0.0013      13     101 ..      13      94 ..       5     113 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.9e-07
     Fer4_12  13 sgCnlsCkgCfnketwsfksgkeftkelleeiiedlkkesiegltllGGEPllpenaeallelvkevkeekpekdiwlytgytleelsk 101
                 + C+l+C+ C+  +  s++++   ++     i+e++     + ++++GGE +l  n e+l++ + + k+ ++   +++ tg  ++  +k
  CCG92621.1  13 KKCPLACAHCITDS--SPQAEGMLEESFVFSILEEA-VGLTPVVSFTGGEAFL--NSEILIRCILKAKALGF--RVTAVTGCGWVRTEK 94 
                 78*********554..55566666677777777776.6677************..*************9999..689999988887765 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.4e-05      0.24       6      92 ..      13      90 ..       9     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.4e-05
     Fer4_14  6 sgCnlsCkgCdnketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletngtle 92
                 +C+l+C  C + +  + +++   +e  + +il   ++    +  +++tGGe +   n + l++ + + k  +  ++++  t+  + 
  CCG92621.1 13 KKCPLACAHCITDS--SPQAEGMLEESFVFSIL--EEAVGLTPV-VSFTGGEAF--LNSEILIRCILKAKALG--FRVTAVTGCGWV 90
                58*********998..44445555555555666..555566566.9*******9..89999988887666666..999988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2476.60
//
Query:       CCG92622.1  [L=101]
Description: Coenzyme PQQ synthesis protein D [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-07   31.0   0.4      3e-07   30.7   0.4    1.1  1  PqqD      Coenzyme PQQ synthesis protein D (PqqD)


Domain annotation for each model (and alignments):
>> PqqD  Coenzyme PQQ synthesis protein D (PqqD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.4   1.6e-11     3e-07       1      67 []      24      91 ..      24      91 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.6e-11
                EEEEE-SS-..EEE--CHHHHHHHH-.SSSS-HHHHHHHHHHHCT--HHHHHHHHHHHHHHHHCTT-- CS
        PqqD  1 eyvlldpetgkyisLnetgafiWkll.dgersveeivaalaeeydvdeeeaeadvlafldqLrekgli 67
                e +ll++ + +y++L+  g+ +Wk l d  ++v ++ + ++e+++ d+ ++++d++ +++ L ek+l+
  CCG92622.1 24 ELILLNTIDWNYYRLDVYGTVVWKKLvDLDGDVNALKKWVLEHFEGDPFQIQNDIDCLIKTLIEKNLL 91
                6899*******************988788788************888899***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 679.76
//
Query:       CCG92623.1  [L=709]
Description: Membrane-fusion protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-08   34.7   0.0    4.9e-08   32.7   0.0    2.0  2  Biotin_lipoyl_2  Biotin-lipoyl like
    9.9e-07   29.4   0.0     0.0059   17.3   0.0    2.3  2  HlyD_3           HlyD family secretion protein
  ------ inclusion threshold ------
        0.2   11.5   0.3       0.95    9.3   0.0    2.0  2  Chordopox_A35R   Chordopoxvirus A35R protein
       0.29    9.9   1.3        2.3    7.0   0.4    2.4  3  YqfD             Putative stage IV sporulation protein YqfD


Domain annotation for each model (and alignments):
>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.1e-11   4.9e-08       3      48 ..     467     512 ..     463     523 .. 0.89
   2 ?   -1.4   0.0      0.48   2.2e+03      21      38 ..     577     594 ..     557     601 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.1e-11
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaq 48 
                      +s+ a vs+++++++V+ G++Vk+G +L++ D+++ +l+++ +e++
       CCG92623.1 467 ISVPAMVSAKIESIHVQIGDYVKKGTLLIQMDPTNILLKIKEVEQD 512
                      4666778***********************************8865 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.48
  Biotin_lipoyl_2  21 GqrVkaGdvLaelDsral 38 
                      G+  + G +L++l ++++
       CCG92623.1 577 GDIPQVGEILVQLADPRY 594
                      555567999999998888 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00025       1.1       4      46 ..     471     513 ..     468     539 .. 0.81
   2 !   17.3   0.0   1.3e-06    0.0059       2      87 ..     558     657 ..     557     676 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00025
      HlyD_3   4 ApvdGvvvelnveegevvqagdelleiippdtllveakvpaad 46 
                 A v+ ++ +++v+ g++v +g+ l +  p++ ll   +v +++
  CCG92623.1 471 AMVSAKIESIHVQIGDYVKKGTLLIQMDPTNILLKIKEVEQDY 513
                 899************************9988776555555555 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.3e-06
      HlyD_3   2 lrApvdGvvv..elnv.eegevvqagdelleiippdtllveakvpaadlgsik......kkgqkvtlkldqgsdytlkgkierisp.....tvdaktga 86 
                 +rAp+ Gvv   ++ v + g++ q g+ l+++++p+ ++v++++ ++d   +       ++   v+++l  ++ ++++  + ++s+     +++ k++ 
  CCG92623.1 558 VRAPIEGVVMgpSNLVsRRGDIPQVGEILVQLADPRYWKVKIALREQDFIYLGrvierkNEPLGVSFRLAADPTKSYRLFLRSLSQfisgvEIEGKKYE 656
                 8********9766778999****************************9988877777655555566666677777888888777776553333444444 PP

      HlyD_3  87 y 87 
                 +
  CCG92623.1 657 F 657
                 4 PP

>> Chordopox_A35R  Chordopoxvirus A35R protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00021      0.95      63     129 ..     193     259 ..     183     269 .. 0.95
   2 ?   -0.7   0.1      0.26   1.2e+03      36      90 ..     464     515 ..     459     556 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00021
  Chordopox_A35R  63 avnGvilkcsednklrlpvtkiyaayrsknsiilccdkdpklsideklqpfyistsiviaearilEv 129
                     a++G  lkc ed  ++ ++ +i        + i  cd++  + ++ +++ f+  t +++++a+++E+
      CCG92623.1 193 ASDGLYLKCLEDLAVENDIERIEFLLVNYGREIAGCDRTCLFAVPLTSKGFSFLTTQDFTKANVFEL 259
                     689**************************************************************98 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.26
  Chordopox_A35R  36 pyliasleleevsvelikqkdledCYiavnGvilkcsednklrlpvtkiyaayrs 90 
                      y i+++ + ++++e i+ + + d Y + +G++l + + +++ l++ ++ + y+ 
      CCG92623.1 464 SYEISVPAMVSAKIESIHVQ-IGD-Y-VKKGTLLIQMDPTNILLKIKEVEQDYKK 515
                     57777777777777777776.444.4.5789999999999999999999988864 PP

>> YqfD  Putative stage IV sporulation protein YqfD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.4   0.00052       2.3     206     232 ..     481     512 ..     479     543 .. 0.73
   2 ?   -0.9   0.1      0.13   5.6e+02     318     365 ..     505     552 ..     500     562 .. 0.78
   3 ?    0.7   0.0     0.041   1.8e+02      95     135 ..     637     675 ..     634     682 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00052
        YqfD 206 lvkegdtVkkGdvLIsgvie.....ekegktr 232
                  v++gd+VkkG +LI+   +      ke +++
  CCG92623.1 481 HVQIGDYVKKGTLLIQMDPTnillkIKEVEQD 512
                 599************98776666663333333 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.13
        YqfD 318 eyeekeeelteeeakeeaeekaeeelkkklpkdakildekvevekeeg 365
                 +++e+e+ ++++ a++ + +++++e   +l+      ++ ++++  ++
  CCG92623.1 505 KIKEVEQDYKKSMAEADLAQNLKQETAMQLSRLNALKSQAILKSLYND 552
                 689999999999999999999999999999877777777777665555 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.041
        YqfD  95 llyllSsfiwsievegnekvseeeilkaleeeGikpGalkk 135
                 +l  lS+fi  +e+eg  k  e  ++   ee++i +  lkk
  CCG92623.1 637 FLRSLSQFISGVEIEG--KKYEFSLIIPWEEKNIDQLLLKK 675
                 6778************..45556666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4873.10
//
Query:       CCG92624.1  [L=302]
Description: Membrane-fusion protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-11   43.8   0.1    2.6e-11   43.2   0.1    1.2  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    2.9e-09   37.6   0.1    6.6e-08   33.2   0.0    2.2  2  HlyD_3           HlyD family secretion protein
    2.1e-08   33.9   0.0    6.3e-08   32.3   0.0    1.8  1  Biotin_lipoyl_2  Biotin-lipoyl like
     0.0093   15.8   0.2       0.33   10.8   0.0    2.9  3  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
      0.087   12.5   4.5       0.13   11.9   4.5    1.2  1  DUF745           Protein of unknown function (DUF745)
        1.3    8.8   6.1        2.2    8.1   6.1    1.3  1  OEP              Outer membrane efflux protein
        1.8    9.2   7.0        4.1    8.1   0.2    2.2  2  DUF4398          Domain of unknown function (DUF4398)


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.1     1e-14   2.6e-11      21     203 ..      62     265 ..      59     270 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 1e-14
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXX.....................XXXXXXXXXXXXXXXXXX CS
    HlyD_D23  21 rvsarveGwveklyvnatgdkVkkGqpLaelyspe....lvaaqeeyllalkakkklkkke....................lleaarerLrllgvseeq 95 
                 r+sa+++G  ek + + +g  VkkG+ +a+l+s+e    +++a++e     ++ +k+   e                    + ++ + ++ + +++e+ 
  CCG92624.1  62 RLSAKASGILEKFFFE-EGACVKKGDIIAQLNSEEekaeIARAEAEIGVHEAEVEKA---EvefkrieglykeeivspkqfEEAKYNYQMAQNKLKEAR 156
                 57899***********.****************862222555555544444422222...134567788888888888866555566677777777777 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  96 iaelektgkvqktvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvea..lpgktfeGkvdyiyptvdpet 192
                    ++++++ +++  v++pi+Gv  +k  +eG+ v+  ++++++ d+s++ +++    + ++++++ +k +v++    ++gk +e +v y++p +dp++
  CCG92624.1 157 ALLITAQNRLESK-IVRSPIEGVFFKKLRNEGESVERLEPVARVIDVSELQMVIYCESKYFGKLHPKDKLSVKLVDgpFAGKVVETTVVYVDPFLDPAS 254
                 6666666666665.59*********************************************************97633679****************** PP

                 XXXXXXXXXXX CS
    HlyD_D23 193 RtvkvRieldN 203
                  t++v ++++ 
  CCG92624.1 255 GTFRVKLVMPA 265
                 *****999875 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.11   2.8e+02       3      41 ..      64     101 ..      62     125 .. 0.70
   2 !   33.2   0.0   2.6e-11   6.6e-08       2      95 ..     171     265 ..     170     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
      HlyD_3   3 rApvdGvvvelnveegevvqagdelleiippdtllveak 41 
                  A  +G++ +   eeg  v +gd ++++  +++ ++e++
  CCG92624.1  64 SAKASGILEKFFFEEGACVKKGDIIAQLNSEEE-KAEIA 101
                 577788888888899************998533.33333 PP

  == domain 2  score: 33.2 bits;  conditional E-value: 2.6e-11
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkld..qgsdytlkgkierisptvdaktgaykvevslen 95 
                 +r+p+ Gv +++  +ege v++ ++++++i+ ++l+  ++  +++ g+++ +++k ++kl   ++ +++++ ++++++p  d+ +g+++v++  ++
  CCG92624.1 171 VRSPIEGVFFKKLRNEGESVERLEPVARVIDVSELQMVIYCESKYFGKLH-PKDKLSVKLVdgPFAGKVVETTVVYVDPFLDPASGTFRVKLVMPA 265
                 89*****9999999***********************************9.66666666554699999*********************9876555 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.5e-11   6.3e-08       4      49 ..      62     107 ..      59     108 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2.5e-11
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaql 49 
                       ++a+ sG +++ + ++G  Vk+Gd++a+l+s++ ++++a+aea +
       CCG92624.1  62 RLSAKASGILEKFFFEEGACVKKGDIIAQLNSEEEKAEIARAEAEI 107
                      578999**************************************97 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00013      0.33      44      73 .]      62      91 ..      59      91 .. 0.91
   2 ?    1.5   0.0      0.11   2.7e+02       3      36 ..     171     199 ..     169     212 .. 0.74
   3 ?   -3.3   0.1       3.3   8.4e+03      49      61 ..     269     282 ..     260     284 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                   EEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 44 eieapkaGvvkeilvkeGdtvevgdllaki 73
                    ++a+++G++++   +eG+ v+ gd++a++
     CCG92624.1 62 RLSAKASGILEKFFFEEGACVKKGDIIAQL 91
                   6899***********************976 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
                    EEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEE CS
  Biotin_lipoyl   3 iksPmiGesveegvvevlvkvGdkVkagqvlaev 36 
                    ++sP  G++ +      l ++G++V+  +++a v
     CCG92624.1 171 VRSPIEGVFFK-----KLRNEGESVERLEPVARV 199
                    45666666666.....677888888888887755 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3.3
                    S.SEEEEEESSTTT CS
  Biotin_lipoyl  49 k.aGvvkeilvkeG 61 
                    + aG+ +e++++e+
     CCG92624.1 269 VvAGITAEVVIPEN 282
                    33677777777765 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   4.5   5.2e-05      0.13      79     150 ..      94     168 ..      88     172 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.2e-05
      DUF745  79 qeekkslqsseanakaaakaakqaqqqlealkallka...akenlenaeqvaagaqqelaektqlleaAkkRvee 150
                 +eek++++++ea + + ++ +++a+ ++++++ l+k+   + +++e+a+   + aq++l+e ++ll +A++R+e+
  CCG92624.1  94 EEEKAEIARAEAEIGVHEAEVEKAEVEFKRIEGLYKEeivSPKQFEEAKYNYQMAQNKLKEARALLITAQNRLES 168
                 7999*******************************9833345677777777899******************985 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.1   0.00086       2.2     117     184 ..     100     167 ..      89     168 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00086
         OEP 117 lllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLe 184
                 +  a++++ + e+ ++ ae  ++++e +yk   +s     +a+ +++ a+++l ea++ l+ a+++Le
  CCG92624.1 100 IARAEAEIGVHEAEVEKAEVEFKRIEGLYKEEIVSPKQFEEAKYNYQMAQNKLKEARALLITAQNRLE 167
                 56788889999*************************56***************************997 PP

>> DUF4398  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   2.3     0.045   1.2e+02      57      78 .]      96     117 ..      88     123 .. 0.83
   2 ?    8.1   0.2    0.0016       4.1      20      44 ..     139     163 ..     130     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.045
     DUF4398  57 rdaelAearAkaakaeaeaaaa 78 
                 ++ae+A+a+A+    eae+++a
  CCG92624.1  96 EKAEIARAEAEIGVHEAEVEKA 117
                 5799999999999999988875 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0016
     DUF4398  20 eyApaeleeAreaLaqAeaamaekd 44 
                 e+A++ ++ A+ +L++A+a+   ++
  CCG92624.1 139 EEAKYNYQMAQNKLKEARALLITAQ 163
                 789999999*****99999654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2427.86
//
Query:       CCG92625.1  [L=723]
Description: Membrane-fusion protein, contains peptidase family M50 domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-08   33.3   0.0    8.1e-08   31.7   0.0    1.7  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    5.1e-05   23.9   0.0      0.014   16.0   0.0    2.4  2  HlyD_3           HlyD family secretion protein
     0.0002   21.1   0.0     0.0031   17.3   0.0    2.2  2  Biotin_lipoyl_2  Biotin-lipoyl like
     0.0025   17.6   0.0     0.0074   16.1   0.0    1.8  1  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
       0.05   12.9  10.7       0.55    9.4  10.7    2.8  1  Peptidase_M50    Peptidase family M50


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   2.2e-11   8.1e-08       2     189 ..     455     641 ..     454     645 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 2.2e-11
                 SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXX.....XXXXXXXXXXXX CS
    HlyD_D23   2 lsktlravGtvayderrlarvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalk.......akkklkkke....lleaarerLrll 89 
                 +++++r+vG v+ d    ++v++   G v+++ v   g++Vk GqpL++l   ++ +  +   l l+       +       +    + ++ +++ + +
  CCG92625.1 455 VREKVRTVGVVRSDFG--QNVASPDGGIVQEIWVY-SGEHVKPGQPLLKLRNDKVETETQLARLDLSmkmvgfsN-------KrtfqQKDEEASKSKEI 543
                 6789999999998865..57888999********9.***************988765544444444433444333.......22333333333344444 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  90 gvseeqiaelektgkvqktvtvkapisGvVteknvr..eGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyp 186
                 +v ++  +      k ++++ ++++i+G++++ nv   +G y+++g+t+++i d+ +   +a + ++q + v +g++v+       +k f+G+v+ +++
  CCG92625.1 544 QVMKSRYDYF---LKKKEQLFLRSSIDGIIVSPNVEslKGRYFKAGETILKIRDMHHFSFVAPLNQSQSRIVYPGAEVKGIWI-STKKIFHGHVAHVSQ 638
                 4444544444...45567899**********99985338***************************************96554.566799999999988 PP

                 XXX CS
    HlyD_D23 187 tvd 189
                 ++ 
  CCG92625.1 639 KLA 641
                 775 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0076        27       2      36 ..     473     506 ..     472     527 .. 0.80
   2 !   16.0   0.0     4e-06     0.014       2      78 ..     562     638 ..     561     659 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0076
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtl 36 
                 + +p +G+v+e+ v  ge v +g++ll++ + d++
  CCG92625.1 473 VASPDGGIVQEIWVYSGEHVKPGQPLLKLRN-DKV 506
                 668999*********************9985.444 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 4e-06
      HlyD_3   2 lrApvdGvvvelnv..eegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisp 78 
                 lr+++dG++v+ nv   +g++  ag+++l+i +  ++ + a +++ +++ ++ +g++v+     ++++   g +  +s+
  CCG92625.1 562 LRSSIDGIIVSPNVesLKGRYFKAGETILKIRDMHHFSFVAPLNQSQSRIVY-PGAEVKGIWI-STKKIFHGHVAHVSQ 638
                 89***********96445*********************************9.9999987665.555566666666666 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   8.5e-07    0.0031       4      43 ..     472     513 ..     464     518 .. 0.81
   2 ?    1.1   0.0     0.098   3.5e+02       4      34 ..     561     593 ..     558     596 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8.5e-07
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGdvLael..Dsralqlala 43 
                      ++a+p  G V ++ V  G +Vk G+ L+ l  D+ +++++la
       CCG92625.1 472 NVASPDGGIVQEIWVYSGEHVKPGQPLLKLrnDKVETETQLA 513
                      79999999**********************444444555555 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.098
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVk..dGqrVkaGdvLaelD 34 
                       + ++++G +++ nV+   G + kaG +++ + 
       CCG92625.1 561 FLRSSIDGIIVSPNVEslKGRYFKAGETILKIR 593
                      5789999*9999999844588999999998875 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.1e-06    0.0074       7      44 ..     477     509 ..     466     513 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.1e-06
                    SSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEE CS
  Biotin_lipoyl   7 miGesveeg.vvevlvkvGdkVkagqvlaeveamKmeme 44 
                    +       g v e+ v  G++Vk gq+l+ + ++K+e+e
     CCG92625.1 477 DG------GiVQEIWVYSGEHVKPGQPLLKLRNDKVETE 509
                    32......1444588888999999999999999998876 PP

>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  10.7   0.00015      0.55       5     210 ..     199     455 ..     195     457 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00015
                    XXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXX CS
                    xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50   5 llgilv..vvHElGHflvAklcgvkveefsigfGpkllsfkkgeteYaiallpLGGyVkmageepeeelseeeakaflkkspwqrllivlAGplan 98 
                     l i++  ++HE+GH+ + +++g +++e+++g+               + ++p+ GyV+ ++      +++            +r+++ lAG+ + 
     CCG92625.1 199 YLAIVIdkTLHEFGHATTCRRFGGEIHEMGVGL---------------FFFIPV-GYVDASDSW---VIPD----------KKARIFVGLAGIYTE 265
                    444444449************************...............999997.599988866...3222..........348************ PP

                    XXXXXXXXXX.......................................................................-EEECECTTTSCEE- CS
                    xxxxxxxxxx.......................................................................xxxxxxxxxxxxxxx RF
  Peptidase_M50  99 filailvfvv.......................................................................pkkskeseeekrgvi 123
                    +i+a l++ +                                                                       p  s+++++++ + +
     CCG92625.1 266 LIVASLAAYFwvflplglaknlafnlmvtasvttlffnfnplmkfdgyyalvdlleipnlreksfayctaklqewllgykdP--SNQGKKNEAKNV 359
                    ****999888899**************9999*********999999999999999998887777777666666666666543..233333333333 PP

                    SEEEC-.........XXXXXXXXXXXXXXXXXXXXXXXXXX.............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    xxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 124 Gvspkp.........vkkegllealkegvektlkvvvltvk.............algklitgklslktlggpisiaqlaseaaeaglssflqllal 197
                     +  ++         +    l +       +  +vv+ +++             +lg  ++  + +  +  p+ +++ a++  ++   s l+++a+
     CCG92625.1 360 WIFFVYsilstvymaY----LCH-------SIGQVVRRFLTpiglerigeflefSLGIAFVMAILFRIFFQPLLMVSKAKDIKKNA--SKLKWVAI 442
                    3333333333322221....222.......22222222222111222223333455555555555555555555555555444444..88899999 PP

                    XXXXXXXXXXXXX CS
                    xxxxxxxxxxxxx RF
  Peptidase_M50 198 isvnLgilNLlPi 210
                     +++Lgil L+P+
     CCG92625.1 443 GGIALGILCLVPV 455
                    9999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 5172.88
//
Query:       CCG92626.1  [L=505]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.9e-139  463.8   0.0   4.6e-139  463.5   0.0    1.0  1  CP_ATPgrasp_2  Circularly permuted ATP-grasp type 2
   3.1e-121  404.5   0.0   3.7e-121  404.2   0.0    1.1  1  CP_ATPgrasp_1  A circularly permuted ATPgrasp


Domain annotation for each model (and alignments):
>> CP_ATPgrasp_2  Circularly permuted ATP-grasp type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  463.5   0.0  5.1e-143  4.6e-139       1     375 []     102     478 ..     102     478 .. 0.98

  Alignments for each domain:
  == domain 1  score: 463.5 bits;  conditional E-value: 5.1e-143
                    -EEE-HHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHTTSS-GG.GGG-TT--GGGTT---GGG-S-SEEEEEEEE.SSS-EEEEEEE-SS---H CS
  CP_ATPgrasp_2   1 PriisaeeWaeleaGlaqRarllnaflaDiYgeqkllkegvlPaelvegspgflrelkgvkppggvrlhiaavDLvrdedgrwlVlednlraPsGv 96 
                    Pr+i ++eW+++++Gl+qR+ +ln+f++D+Yg+q++lke+vl+++lv +s g+l+++ gvk+p+g+++ i+++DL++de+g+++Vlednlr+PsG+
     CCG92626.1 102 PRLILKKEWDKIQRGLIQRTIALNLFIEDVYGKQRILKEKVLDQALVLSSLGYLPQMIGVKVPRGIYAAICGCDLLQDENGNFVVLEDNLRIPSGA 197
                    9*********************************************************************************************** PP

                    HHHHHHHHHHHHH-HHHHHHS-B---TTHHHHHHHHHHHTS-..-S...S-EEEE---SSSTTHHHHHHHHHHHT-EEE-GGGEEE-SS-EEE--T CS
  CP_ATPgrasp_2  97 gYalenRevlsrvlpelfrelrvrrlaeffealreaLaalap.akaeeprtivlLtpGpynsayfEhafLArylgveLvegsDLtvrdgrvylktl 191
                    +Y+l  R+vl++ +p lf+ ++  +++++++ l+++L +l+p + ++ep ++++LtpGpynsayfEhafLA+++g++Lve++DL+v++ ++yl++ 
     CCG92626.1 198 AYMLCCRKVLKESCPFLFDLKKPLPIQSYPTVLLKTLLDLHPsEVSQEP-VVAVLTPGPYNSAYFEHAFLANQMGIPLVEPKDLVVENATLYLHSK 292
                    ******************************************5555555.5********************************************* PP

                    T--EEE-EEEE-S-GGGS-TTTS-TT-SSS-TTHHHHHHTTS-EEES-TTTHHHHSTTTGGGHHHHHHHHH-S--SSEE---EETTSHHHHHHHHH CS
  CP_ATPgrasp_2 192 eglkrVdviyrrvdddfldplelradsllGvpgLleavragnvavaNalGsgvaddkalyaflpaliryllgeellLpnvptwwcgeeealeevle 287
                    + +kr+ ++yrr++++f+dp+++r+dsl+Gv gL+    +g ++++Na+G+g+ ddka+y+++p++iry+l+ee++L+n++t+ c + ++ + v++
     CCG92626.1 293 THKKRISILYRRIEESFIDPVAFRPDSLIGVKGLFGSFIKGGLSLVNAPGCGIGDDKAIYPYVPKMIRYYLNEEPILRNIETYSCVDSKQQAFVVD 388
                    ************************************************************************************************ PP

                    SGGGEEEEE--------EEEGGG--HHHHHHHHHHHHHSGGGEEEEE-----EEEEEE...EEEEEEEEE-EEE.ES.SEEE-S--EEEEE CS
  CP_ATPgrasp_2 288 nldelvvkpvdesggegvligpelsaaeleelrarikanperyvaqevvelstaptlk...leprhvdlRvFvlateegirvmpggLtRvA 375
                    nl++lvvk+v++sgg g+ligp++s++++ee+++ri a+p++y+aq+++++s++p+++   +epr+vdlR+Fvl++ ++ rv+pggLtRv+
     CCG92626.1 389 NLERLVVKEVNQSGGFGMLIGPASSSKTREEFKKRILAHPRNYIAQPLIHFSKLPCMSgsgIEPRRVDLRPFVLMG-KELRVVPGGLTRVS 478
                    *********************************************************5556*************86.59**********95 PP

>> CP_ATPgrasp_1  A circularly permuted ATPgrasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.2   0.0  4.2e-125  3.7e-121       1     332 []     102     434 ..     102     434 .. 0.99

  Alignments for each domain:
  == domain 1  score: 404.2 bits;  conditional E-value: 4.2e-125
  CP_ATPgrasp_1   1 PrivsaeewerlerGlkqRvraLnafLaDiYgdqeilkdGlvPeelvlgnaaylramnGvevPgdvylhvagiDlvraedgefrvlednlrvpsGv 96 
                    Pr++  +ew+++ rGl qR  aLn+f++D+Yg+q+ilk+ ++ ++lvl++  yl++m Gv+vP+++y+ + g+Dl ++e+g+f vlednlr+psG+
     CCG92626.1 102 PRLILKKEWDKIQRGLIQRTIALNLFIEDVYGKQRILKEKVLDQALVLSSLGYLPQMIGVKVPRGIYAAICGCDLLQDENGNFVVLEDNLRIPSGA 197
                    99********************************************************************************************** PP

  CP_ATPgrasp_1  97 sYllenRkivarlfPelfaelrvrpvadyaqaLlealrevapaea.adptvvvltPGvynsayfehayLarklGveLvegrDLvvrdnkvylrtte 191
                    +Y+l  Rk+++   P lf  ++  p+++y++ Ll++l ++ p+e+ ++p+v+vltPG+ynsayfeha+La+++G++Lve++DLvv++  +yl++  
     CCG92626.1 198 AYMLCCRKVLKESCPFLFDLKKPLPIQSYPTVLLKTLLDLHPSEVsQEPVVAVLTPGPYNSAYFEHAFLANQMGIPLVEPKDLVVENATLYLHSKT 293
                    *****************************************9987699************************************************ PP

  CP_ATPgrasp_1 192 glkrvdviyRRvdddflDPlefrpdsvlGvpGlleayraGnvtlanavGsGvaddkavyafvPelieyyLgeepilknvetyrceeaddlkevLdr 287
                     +kr+ ++yRR+++ f+DP++frpds +Gv Gl+ +  +G  +l+na+G G+ ddka+y +vP++i+yyL+eepil+n+ety c ++++++ v+d+
     CCG92626.1 294 HKKRISILYRRIEESFIDPVAFRPDSLIGVKGLFGSFIKGGLSLVNAPGCGIGDDKAIYPYVPKMIRYYLNEEPILRNIETYSCVDSKQQAFVVDN 389
                    ************************************************************************************************ PP

  CP_ATPgrasp_1 288 lselvvkevegsggygiviGptaskaelaelarrilaepeqyiaq 332
                    l++lvvkev++sgg+g++iGp++s++ ++e  +rila+p++yiaq
     CCG92626.1 390 LERLVVKEVNQSGGFGMLIGPASSSKTREEFKKRILAHPRNYIAQ 434
                    ********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3669.46
//
Query:       CCG92627.1  [L=303]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-36  124.5   0.0    8.2e-36  124.3   0.0    1.0  1  Alpha-E   A predicted alpha-helical domain with a conserved E


Domain annotation for each model (and alignments):
>> Alpha-E  A predicted alpha-helical domain with a conserved ER motif.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   4.6e-40   8.2e-36       5     287 ..       5     297 ..       1     301 [. 0.86

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 4.6e-40
     Alpha-E   5 vAenLfWlgRYlERaentaRllrvtlqlllde.eeewrallaalgaeegfeeryeeae..leevlkfllldeenpgSiasclraarenaravRerlsse 100
                  +en++W++RY+ERa  ++ + + +l   l++ +e+w+ + + +++  ++ ++ e ++  l   l fll+d+enp S +s+l +aren + +R+ l+  
  CCG92627.1   5 RVENIYWMARYMERALFSLNIGKSYLGYGLEAsQEKWNYCWQRIKKGMRIFSTPEPTNssLPVSLFFLLFDSENPLSAMSSLFSARENSKILRDILPVA 103
                 579****************************66999*******9999988544433335677779********************************** PP

     Alpha-E 101 mWevlnelylelke.....klsel.....eflervkerlaafsGlaeetmlrdegwrFlrlGrrlERadntarlldvklael.eve..dslqlealLrs 186
                 +We+lne+y  l +     +   l      +++ ++e++++f  l    +  de w +lr+G ++E+  n a+ll +   +  + +  ++ ++ea L+s
  CCG92627.1 104 LWEQLNEAYFLLSSttvtsS---LqpshyPLITSTIEKMLLFGQLEYYLFEEDELWAWLRAGEYIEKIGNFAALLFAYDPTEnK-DnpSFEEWEAFLNS 198
                 *******9999997655432...233457**********************************************887666542.357778******** PP

     Alpha-E 187 vssletYrrry.rsriepervlelLlldednPrSlafqleeleealaalspaeseegrsseaerllgellaelrladieelleglhelldelqeelael 284
                 +  l+ +r+ +  ++++ +++  ++ll +++P S++ qle+l  +l  +s++   + ++s +++llg++ ++ r +  +   e+ ++l  e+q +++++
  CCG92627.1 199 LFLLDLFRKKVgLASLSFDKITSFILLANKYPYSILSQLEKLMGCLGIISQEWIVDMAQSTTKELLGKIVDSYRKEVSS---ENRKKLFLEIQIACNSI 294
                 ********9885799**********************************998888888888888999988888843333...56677777777777777 PP

     Alpha-E 285 sda 287
                 +++
  CCG92627.1 295 HQH 297
                 765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2176.77
//
Query:       CCG92628.1  [L=799]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-66  225.0   0.0    1.9e-66  224.5   0.0    1.1  1  CP_ATPgrasp_2  Circularly permuted ATP-grasp type 2
    1.9e-59  201.3   0.0    2.8e-59  200.8   0.0    1.1  1  CP_ATPgrasp_1  A circularly permuted ATPgrasp
    8.8e-46  157.0   0.1    1.4e-45  156.3   0.1    1.3  1  Alpha-E        A predicted alpha-helical domain with a conser


Domain annotation for each model (and alignments):
>> CP_ATPgrasp_2  Circularly permuted ATP-grasp type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.5   0.0   3.2e-70   1.9e-66       1     362 [.      50     402 ..      50     414 .. 0.89

  Alignments for each domain:
  == domain 1  score: 224.5 bits;  conditional E-value: 3.2e-70
                    -EEE-HHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHTTSS-GG.GGG-TT--GGGTT---GGG-S-SEEEEEEEE.SSS-EEEEEEE-SS---H CS
  CP_ATPgrasp_2   1 PriisaeeWaeleaGlaqRarllnaflaDiYgeqkllkegvlPaelvegspgflrelkgvkppggvrlhiaavDLvrdedgrwlVlednlraPsGv 96 
                    P+++s ++W e++ G++qR+ +  +fl+D+Y e++++k++v+P e   +s++++re+ g++ppgg +l i++++++++e+g+w+Vl+d+l+ P  +
     CCG92628.1  50 PMVLSVDDWMEIRVGVEQRMLAWRRFLKDLYFEKSIFKDKVIPFEPFLSSEQYRRECVGLEPPGGEYLYIYSCEVAKEENGKWVVLRDELEQPRNL 145
                    99********************************************************************************************** PP

                    HHHHHHHHHHHHH-HHHHHHS-B---TTHHHHHHHHHHHTS-.-S...S-EEEE---SSSTTHHHHHHHHHHHT-EEE-GGGEEE-SS-EEE--TT CS
  CP_ATPgrasp_2  97 gYalenRevlsrvlpelfrelrvrrlaeffealreaLaalapakaeeprtivlLtpGpynsayfEhafLArylgveLvegsDLtvrdgrvylktle 192
                        e R+ l+++lp+l++ l+++++++f+e+++ea ++   +++ + + i+++ +  ++    E a+LAr +g+++  +sDL+v +g++y ktl+
     CCG92628.1 146 MLSEEIRKGLKEALPQLYEGLEIMPITGFPERMLEASTQNLSDNR-NCQ-IAIVAATAED---WEAAILARRMGIPMFLPSDLVVLQGKLYAKTLS 236
                    *******************************99988777644333.444.8888776655...699****************************** PP

                    --EEE-EEEE-S-GGGS-TTTS-TT-SSS-TTHHHHHHTTS-EEES-TTTHHHHSTTTGGGHHHHHHHHH-S--SSEE---EETTSHHHHHHHHHS CS
  CP_ATPgrasp_2 193 glkrVdviyrrvdddfldplelradsllGvpgLleavragnvavaNalGsgvaddkalyaflpaliryllgeellLpnvptwwcgeeealeevlen 288
                    gl+++++++rr+ d  ldp ++r + + G++gL+ ++r+ ++ ++Na G+g+  d+ l ++  ++iry+lge++lL+++pt+   +++  +  le 
     CCG92628.1 237 GLEPINILFRRLPDGLLDPIATRCEAQEGIAGLFWCLRKATLRLINAAGCGITTDPLLQSYASKMIRYYLGEKPLLNSLPTYPAYDPDVFSLFLES 332
                    ************************************************************************************************ PP

                    GGGEEEEE--------EEEGGG--HHHHHHHHHHHHHSGGGEEEEE-----EEEEE...EEEEEEEEEE-EEE.ES. CS
  CP_ATPgrasp_2 289 ldelvvkpvdesggegvligpelsaaeleelrarikanperyvaqevvelstaptl...kleprhvdlRvFvlatee 362
                    l+++++k+ ++++       ++l  ++  +  +r   + ++ v q+  +l+++p +   +l+ +++ l +F + +++
     CCG92628.1 333 LQDYFLKDRNGHSV----ALERLLGKND-KTISR--VDCRSLVIQKKPQLKKFPSFyrtTLSHKPAALVLFGVIKNG 402
                    *********99973....3333333322.22333..35567777777788888777654477777777777666555 PP

>> CP_ATPgrasp_1  A circularly permuted ATPgrasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.8   0.0   4.6e-63   2.8e-59       1     312 [.      50     358 ..      50     375 .. 0.93

  Alignments for each domain:
  == domain 1  score: 200.8 bits;  conditional E-value: 4.6e-63
  CP_ATPgrasp_1   1 PrivsaeewerlerGlkqRvraLnafLaDiYgdqeilkdGlvPeelvlgnaaylramnGvevPgdvylhvagiDlvraedgefrvlednlrvpsGv 96 
                    P ++s ++w  +  G++qR+ a   fL+D+Y +++i+kd ++P e  l++++y+r+  G+e+Pg+ yl++ +++++++e+g++ vl d+l  p  +
     CCG92628.1  50 PMVLSVDDWMEIRVGVEQRMLAWRRFLKDLYFEKSIFKDKVIPFEPFLSSEQYRRECVGLEPPGGEYLYIYSCEVAKEENGKWVVLRDELEQPRNL 145
                    89********************************************************************************************** PP

  CP_ATPgrasp_1  97 sYllenRkivarlfPelfaelrvrpvadyaqaLlealrevapaeaadptvvvltPGvynsayfehayLarklGveLvegrDLvvrdnkvylrtteg 192
                        e Rk ++ ++P+l++ l++ p++ +++ +lea ++  +++ ++ ++++++     +  +e a Lar++G+++  ++DLvv ++k+y +t++g
     CCG92628.1 146 MLSEEIRKGLKEALPQLYEGLEIMPITGFPERMLEASTQNLSDN-RNCQIAIVAA---TAEDWEAAILARRMGIPMFLPSDLVVLQGKLYAKTLSG 237
                    99999***************************999987777776.4888888775...45679********************************* PP

  CP_ATPgrasp_1 193 lkrvdviyRRvdddflDPlefrpdsvlGvpGlleayraGnvtlanavGsGvaddkavyafvPelieyyLgeepilknvetyrceeaddlkevLdrl 288
                    l+++++++RR+ d  lDP++ r +++ G++Gl+   r+    l na G G++ d+ + ++  ++i+yyLge+p+l++ +ty + ++d  +  L+ l
     CCG92628.1 238 LEPINILFRRLPDGLLDPIATRCEAQEGIAGLFWCLRKATLRLINAAGCGITTDPLLQSYASKMIRYYLGEKPLLNSLPTYPAYDPDVFSLFLESL 333
                    ************************************************************************************************ PP

  CP_ATPgrasp_1 289 selvvkevegsg.gygiviGptask 312
                    ++  +k+ +g   + + ++G + ++
     CCG92628.1 334 QDYFLKDRNGHSvALERLLGKNDKT 358
                    ******9987543777777776555 PP

>> Alpha-E  A predicted alpha-helical domain with a conserved ER motif.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.3   0.1   2.3e-49   1.4e-45       2     292 ..     460     779 ..     460     780 .. 0.82

  Alignments for each domain:
  == domain 1  score: 156.3 bits;  conditional E-value: 2.3e-49
     Alpha-E   2 lSRvAenLfWlgRYlERaentaRllrvtlqlllde.....eeewrallaalgaeegf..eery....eeae..leevlkfllldeenpgSiasclraar 87 
                 lSRvAe+++W+gRYl R+ ++  +l ++     ++     e+++++ll+ +     +  +       +  +  + ++  ++ + ++   S++sc++++ 
  CCG92628.1 460 LSRVAESMYWMGRYLTRSMQLNHMLLTVRFFEDEAmkgecEDAYQNLLSEVLGYFVIrsN--SfhstG--TkdFLTLFSSFFTGTDSYDSVVSCISKCY 554
                 7***********************988777666646556666677777666555555442..222223..24599************************ PP

     Alpha-E  88 enaravRerlssemWevlnelylelke..kl.sel...eflervkerlaafsGlaeetmlrdegwrFlrlGrrlERadntarlldvklael.eve.... 175
                 +n r++R+ l++e+W +l +l  +l++  ++ s+    + l++    + ++  +++e +lr+e w+F+++G++ E++   + l++   +   e+e    
  CCG92628.1 555 DNGRKIRDSLPPEVWLALSSLFFSLQTlpHVrSSInydQSLNEFSIGSDRLFAIINEHLLRNELWNFFQIGTFYEKGKFSLHLIKLCTKITeEKEafsr 653
                 *************************9887554333678**********************************************999888852346788 PP

     Alpha-E 176 ...dslqlealLrsvssletYrrryrsriepervlelLlldednPrSlafqleeleealaalspaeseegrsseaerllgellaelrladieell...e 268
                     +++le++L+++s+l +Yr+ y+  ++p++++elLl+d+++PrS+ f+l+++e+ l+  ++    +++s+++   ++ ++a+l+ + ++e+    e
  CCG92628.1 654 gffLQIALEWILKLTSALYAYRSLYHYPFSPKNLIELLLFDRQFPRSIYFCLRQIEAMLQFTER---IQNMSQKPLSFVRYMEAKLK-RWMDEIGsnqE 748
                 99*889******************************************************9965...34567788999999999999.34455544323 PP

     Alpha-E 269 .......glhelldelqeelaelsdaiserY 292
                        + ++ ++e+++e+ e++  +s++Y
  CCG92628.1 749 kdkeniiQFKQGIREIEKEFYEFHSLLSDEY 779
                 4455555666667777777777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 5182.86
//
Query:       CCG92629.1  [L=285]
Description: putative Transglutaminase-like enzyme, cysteine protease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-25   89.6   0.0    2.5e-25   89.1   0.0    1.2  1  Transglut_core   Transglutaminase-like superfamily
    1.5e-16   61.0   0.2    2.4e-16   60.4   0.2    1.3  1  Bact_transglu_N  Bacterial transglutaminase-like N-terminal r
    8.8e-05   22.1   0.0    0.00017   21.2   0.0    1.5  1  DUF553           Transglutaminase-like domain
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.27   11.1   0.0    1.6  1  Transglut_core3  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   5.6e-29   2.5e-25       2     112 .]     128     239 ..     127     239 .. 0.89

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 5.6e-29
  Transglut_core   2 alaeeltagakdplekakaiyewvrknveysaprrtpgsrdaeavletgkGncedfaslfvallRalGipaRvvtgylsgeeekeq...svased 93 
                     +l+ ++ + +k+  e++ ++++++++  +y  p++t+ s +++++l  +kG+c+d+++l++a+lRa GipaR+v+gy++   ++e    +  +  
      CCG92629.1 128 ELSSKIFQREKPLIEALLELNQFIHQFLSYA-PGTTDISTSVSELLILRKGVCQDYTHLMIAVLRATGIPARYVSGYIEP-IKEESsvkQPIGVA 220
                     67889999999999*****************.**********************************************94.44444244444555 PP

  Transglut_core  94 aHawvevylegygWvplDp 112
                     +Hawvevyl++++Wv +Dp
      CCG92629.1 221 THAWVEVYLPNKKWVGFDP 239
                     6*****************9 PP

>> Bact_transglu_N  Bacterial transglutaminase-like N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.2   5.4e-20   2.4e-16       2      79 ..       4      80 ..       3      81 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 5.4e-20
  Bact_transglu_N  2 rvrHrtrYtYdrpvslapqvlrLrPrsharqrvlsyslkvePepaevnwqqDafgnkvarvvvdephteleveaesev 79
                     +++H+t+Y Y++ + ++  +lr++P+++ rq+vls+++ ++P+ + v  ++D+fgnk+  ++++ +h++l ve +s+v
       CCG92629.1  4 SISHTTEYVYTAAALESFSELRCHPQNSIRQTVLSHEMILSPTVP-VYFYTDYFGNKTSFFSIPFKHNRLIVETKSIV 80
                     79****************************************876.7***************************9987 PP

>> DUF553  Transglutaminase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.8e-08   0.00017      65      99 ..     159     200 ..     101     238 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.8e-08
      DUF553  65 e.......tpkeilktkkgiCrDYaiLTaalLlnlniskvyl 99 
                         + +e+l  +kg+C+DY+ L  a+L +++i   y+
  CCG92629.1 159 PgttdistSVSELLILRKGVCQDYTHLMIAVLRATGIPARYV 200
                 04444455899************************9988776 PP

>> Transglut_core3  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.1e-05      0.27      41      97 ..     161     227 ..     118     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.1e-05
  Transglut_core3  41 lgravraaarllpgrs.kCLpralalalllrrrgipatlviGvrkedd.........pfaaHAWvev 97 
                      ++++  ++++ll +r   C     ++ ++lr+ gipa+ v G     +          +a HAWvev
       CCG92629.1 161 TTDISTSVSELLILRKgVCQDYTHLMIAVLRATGIPARYVSGYIEPIKeessvkqpiGVATHAWVEV 227
                      5666677788777777799999999*****************65432335567775569******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2082.37
//
Query:       CCG92630.1  [L=227]
Description: Cell wall-associated hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-11   43.8   0.0    3.4e-11   43.1   0.0    1.3  1  NLPC_P60  NlpC/P60 family
  ------ inclusion threshold ------
       0.01   15.5   0.1       0.11   12.1   0.0    2.0  2  DUF1175   Protein of unknown function (DUF1175)


Domain annotation for each model (and alignments):
>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   3.8e-15   3.4e-11       3      77 ..      71     166 ..      69     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 3.8e-15
                 BB-TT--BTT..EB-HHHHHHHHHHTTT----SSHHHH...............CCCSEE..EEGGG--TTEEEEESG......TGGESEEEEEEETTE CS
    NLPC_P60   3 pYrwGGksps..gfDCsglvryafakagielprssgeq...............eaagkkkeiskselkrGDLvffkt......kkgisHvgiYlgngk 77 
                  Y +G   p+  g+DCsg+++y++ + g++    s +q                +++++     selk+GDL+f+ +         i+Hv+iYlg +k
  CCG92630.1  71 TYLYGSADPKegGMDCSGFIYYLLTQIGLKNVPRSASQiyswvrkeglfravlSNNQES--FELSELKPGDLLFWIGtyptanDPPITHVMIYLGHEK 166
                 599999988899***************998655555555***********986666666..99***********98778887667799******8765 PP

>> DUF1175  Protein of unknown function (DUF1175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.043   3.8e+02      53      63 ..      83      93 ..      73     100 .. 0.83
   2 ?   12.1   0.0   1.3e-05      0.11     136     168 ..     129     167 ..     121     217 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.043
     DUF1175 53 erDCaglvrya 63
                  DC+g++ y 
  CCG92630.1 83 GMDCSGFIYYL 93
                57******995 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.3e-05
     DUF1175 136 srdveqAkpgDllFf...dqeddelP.yHlmiylge..d 168
                 s ++++ kpgDllF+    +  ++ P  H+miylg+  +
  CCG92630.1 129 SFELSELKPGDLLFWigtYPTANDPPiTHVMIYLGHekQ 167
                 5678899*****9973333556666635*******9542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1853.47
//
Query:       CCG92631.1  [L=50]
Description: hypothetical protein MFUM_710028 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 346.29
//
Query:       CCG92632.1  [L=48]
Description: hypothetical protein MFUM_710029 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.50
# Mc/sec: 291.38
//
Query:       CCG92633.1  [L=257]
Description: Transcriptional regulator LuxR family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-21   75.1   0.1    4.2e-21   74.3   0.1    1.5  1  GerE          Bacterial regulatory proteins, luxR family
    6.2e-12   45.2   0.0    9.2e-12   44.7   0.0    1.2  1  Autoind_bind  Autoinducer binding domain
    7.5e-05   22.3   0.0    0.00016   21.3   0.0    1.6  1  Sigma70_r4_2  Sigma-70, region 4
    0.00021   20.8   0.0    0.00037   19.9   0.0    1.4  1  Sigma70_r4    Sigma-70, region 4
    0.00086   19.1   0.0     0.0027   17.6   0.0    1.8  1  HTH_5         Bacterial regulatory protein, arsR family
     0.0057   16.4   0.1      0.013   15.3   0.1    1.6  1  HTH_38        Helix-turn-helix domain
     0.0073   16.1   0.0       0.02   14.7   0.0    1.7  1  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.011   15.9   0.0      0.023   14.8   0.0    1.5  1  HTH_28        Helix-turn-helix domain
      0.026   14.3   0.0      0.096   12.5   0.0    1.9  2  HTH_10        HTH DNA binding domain


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.1   2.1e-24   4.2e-21       2      56 ..     194     248 ..     193     249 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 2.1e-24
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                 +L+ RE+e+ +++ eGk+n+eI+ +lniSe TVk+h++ni+ KL+v++r+++v  
  CCG92633.1 194 TLTHREKEIIKWVKEGKTNWEISCILNISESTVKYHLKNIFIKLDVTNRCQAVAR 248
                 8***************************************************976 PP

>> Autoind_bind  Autoinducer binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   4.6e-15   9.2e-12      38     148 ..      66     174 ..      48     175 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 4.6e-15
                   EEE.SS-HHHHHHHHHTTGGGT-HHHHHHHHCSSEEEEECGGCCCCCSHHHHHHHHHHHHTT-SEEEEEEEEETTSSEEEE.EEEESSSSCCHHHHH CS
  Autoind_bind  38 lls.nyPaeWlerYveegylaiDPvvreaarssspfvWsddllaaelspaarrfldeardfGlrsGltvpvhgprgrlaal.slageerdldaaeaa 132
                   +++ ++P +    Y++ +y+++DPv+r a+++ + +v + + ++  +++  ++++++a+d Gl +Gl+++v+    ++a+l s++ ++ +++++   
    CCG92633.1  66 IFNhSFPNDLIAFYLKLQYQKVDPVIRTALNNEGRIVRRTVIFKNNHDKLRKEYIKDASDIGLLTGLSYGVFEQTSSIATLfSFCDKDIERHRR--- 159
                   666699**************************************99999999**************************9988*********999... PP

                   HHHHHHHHHHHHHHHH CS
  Autoind_bind 133 eararlqllalhaher 148
                    ++  l  l +h+h++
    CCG92633.1 160 -HEIVLGVLMHHLHLS 174
                   .999*********986 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     8e-08   0.00016      11      49 ..     195     232 ..     192     237 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8e-08
                   S-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2  11 LperqreifllryleglsykEIAellgisegtVksrlsR 49 
                   L+ r++ei+     eg++  EI+++l+ise+tVk++l+ 
    CCG92633.1 195 LTHREKEIIKWVK-EGKTNWEISCILNISESTVKYHLKN 232
                   6777888888854.99********************975 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.9e-07   0.00037       3      48 ..     193     237 ..     193     238 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.9e-07
                 HHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   3 asLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 ++L+ re+e+++ + + + T  EI+ +l+iS+++V+ ++k+ + kL
  CCG92633.1 193 DTLTHREKEIIKWVKEGK-TNWEISCILNISESTVKYHLKNIFIKL 237
                 69************9877.*****************9999887666 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.3e-06    0.0027      17      38 ..     211     232 ..     201     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.3e-06
                 EHHHHHHHHTS-HHHHHHHHHH CS
       HTH_5  17 cvcelaeelglsqstvShHLkk 38 
                 +  e++++l++s+stv +HLk 
  CCG92633.1 211 TNWEISCILNISESTVKYHLKN 232
                 5669****************95 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   6.3e-06     0.013      12      42 ..     201     231 ..     194     232 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.3e-06
      HTH_38  12 eIerllaeGlslreIArrLgrspsTIsRElk 42 
                 eI ++ +eG+++ eI  +L+ s sT+ ++lk
  CCG92633.1 201 EIIKWVKEGKTNWEISCILNISESTVKYHLK 231
                 7889***********************9998 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     1e-05      0.02       9      36 ..     201     228 ..     194     234 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1e-05
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvyr 36 
                 +i++ ++eG++  eI+ +L++s++Tv  
  CCG92633.1 201 EIIKWVKEGKTNWEISCILNISESTVKY 228
                 59************************75 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.2e-05     0.023       4      34 ..     201     231 ..     200     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.2e-05
      HTH_28   4 eiikllaaGhsvreaArelgisrrtvyrWik 34 
                 eiik++++G++  e++++l+is++tv+  +k
  CCG92633.1 201 EIIKWVKEGKTNWEISCILNISESTVKYHLK 231
                 8*************************65544 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.2   6.4e+03       1      10 [.     195     204 ..     195     204 .. 0.89
   2 ?   12.5   0.0   4.8e-05     0.096      28      50 ..     214     236 ..     209     237 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.2
      HTH_10   1 LTdkqlevlk 10 
                 LT ++ e++k
  CCG92633.1 195 LTHREKEIIK 204
                 899**99986 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.8e-05
      HTH_10  28 eLAkelGIskstlsehLrkaesk 50 
                 e++ +l+Is+st+++hL+++  k
  CCG92633.1 214 EISCILNISESTVKYHLKNIFIK 236
                 79999*************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1953.43
//
Query:       CCG92634.1  [L=62]
Description: hypothetical protein MFUM_710031 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0041   17.2   0.2     0.0048   17.0   0.2    1.1  1  MetOD2           Metanogen output domain 2
  ------ inclusion threshold ------
      0.026   14.3   1.7      0.033   14.0   1.7    1.2  1  Chordopox_A30L   Chordopoxvirus A30L protein
      0.031   14.3   0.1      0.042   13.9   0.1    1.5  1  La               La domain
      0.094   13.2   0.1      0.097   13.1   0.1    1.1  1  Snapin_Pallidin  Snapin/Pallidin
       0.11   12.2   0.0       0.11   12.2   0.0    1.1  1  DUF3287          Protein of unknown function (DUF3287)


Domain annotation for each model (and alignments):
>> MetOD2  Metanogen output domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   1.3e-06    0.0048      38      85 ..      12      54 ..       8      57 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.3e-06
      MetOD2 38 llslLsqtydidddkaevseeieaalknlekkleaqeerlkqikkele 85
                l++l +++ d ++d     e+i aa+++l kk+ + e r++qi+k++ 
  CCG92634.1 12 LINLFNKLIDYNED-----EKIWAAIESLAKKIDQIEWRIAQIEKKIG 54
                66777777777755.....8999**********************996 PP

>> Chordopox_A30L  Chordopoxvirus A30L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.7   9.3e-06     0.033       9      50 ..      12      53 ..       4      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.3e-06
  Chordopox_A30L  9 flHLLsnLsnnkdDsefaatlsvikElisqINlkvleinKKs 50
                    ++ L ++L   ++D+++ a +  +   i qI  ++ +i+KK 
      CCG92634.1 12 LINLFNKLIDYNEDEKIWAAIESLAKKIDQIEWRIAQIEKKI 53
                    6789999***99****************************94 PP

>> La  La domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.2e-05     0.042      25      58 ..       2      33 ..       1      52 [. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
                TTSTTS---HHHHHTSSHHHHHHSSHHHHHHHHH CS
          La 25 dkdpegwVplsliasfkrmkkltkdveliaealr 58
                + +++++V ++li  f+++ +++ + e+i +a++
  CCG92634.1  2 K-NNDQFVAIDLINLFNKLIDYN-EDEKIWAAIE 33
                4.578****************99.5588888875 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.7e-05     0.097      33      79 ..       9      53 ..       1      58 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.7e-05
  Snapin_Pallidin 33 leqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerl 79
                     + +l +l +kL +++e+++  + + +++ akK+ +i+ r+ ++++++
       CCG92634.1  9 AIDLINLFNKLIDYNEDEK--IWAAIESLAKKIDQIEWRIAQIEKKI 53
                     5667788889999999999..**********************9987 PP

>> DUF3287  Protein of unknown function (DUF3287)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.1e-05      0.11      72      92 ..      33      53 ..      11      61 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.1e-05
     DUF3287 72 qklgkkrqtleaRiarveRkl 92
                + l kk++++e Ria++e+k+
  CCG92634.1 33 ESLAKKIDQIEWRIAQIEKKI 53
                5799***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1260  (0.0702772); expected 358.6 (0.02)
Passed bias filter:                      802  (0.044732); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 443.87
//
Query:       CCG92635.1  [L=226]
Description: DNA-binding response regulator, OmpR family (REC-wHTH domains) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-20   71.9   0.1      7e-20   70.9   0.1    1.5  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
     0.0013   18.9   0.0     0.0021   18.2   0.0    1.4  1  Response_reg  Response regulator receiver domain


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.1   7.8e-24     7e-20       2      76 ..     146     221 ..     145     222 .. 0.92

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 7.8e-24
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTS..TSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgede..dvddrtvdvhisrLRkkLeddekkprlIetvrgvGYr 76 
                  +e++ltpkef+lL+lLl++++++vs ee+ e++wg+ +   +  ++++vhi+ LRkkLe+++  +++I t+rg+G +
   CCG92635.1 146 REIKLTPKEFSLLALLLSKRNNIVSTEEISEQIWGNPSkiSSIRNVIQVHICGLRKKLEKNT-LKNFITTIRGKGWI 221
                  589**********************************9666678****************65.778*********86 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.3e-07    0.0021      30     111 ..      31     113 ..      10     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.3e-07
                   SSHHHHHHHHHHHHESEEEEESSCSS.SEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg  30 edgkealellkeekvdlillDinmpg.mdGlellkeireedpelpviiltahseeedavealkagaddflsKpfdpeeLlkal 111
                   ++ +e++ +l  +++d  ++D + p     le+++++r e   lp++++    + + ++ al+ g++ f+ K+f+peeL ++l
    CCG92635.1  31 NHLSEFFIQLIFKTYDAAIIDPKTPSnFPYLEIVEKLRSEGILLPILLIDIDLNAQKRIIALRKGIEVFIPKDFSPEELAEHL 113
                   5566667777788899999999999877889************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1593.37
//
Query:       CCG92636.1  [L=101]
Description: hypothetical protein MFUM_720001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 707.78
//
Query:       CCG92637.1  [L=206]
Description: Glycerol uptake facilitator or related permease (Major Intrinsic Protein Family) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-31  108.5  16.7    4.5e-21   75.6  11.3    2.9  2  MIP       Major intrinsic protein


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6  11.3   2.5e-25   4.5e-21      10     180 ..       3     149 ..       1     151 [. 0.85
   2 !   45.2   6.7   4.8e-16   8.6e-12       5     116 ..     102     203 ..      99     206 .] 0.83

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 2.5e-25
                 HHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHH CS
         MIP  10 avlAEflatlllvfigvgsalnvkkkvsslaslvsvtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllGaivaaa 108
                 +++ Ef++t++lv +++g+++ v+           +++   a+  g al+v ++  ++iSG+H+NPavTl++++ ++   + ++ Y+ +Q lGa++aa 
  CCG92637.1   3 KYIVEFIGTFFLV-LTIGCTVLVS-----------GGIPPLAI--GSALMVMIFSGGHISGGHFNPAVTLGVWLRGRCHSKDVLPYMFSQFLGALAAAQ 87 
                 7899****98776.5788888444...........45566666..78888899********************************************** PP

                 HHHHHCHHHHHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHH CS
         MIP 109 llklltkglesraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvalii 180
                 l++l+ k+          s   ++  + a+++E+++ f+Lv+vv+ +++ k ++   ++ +laig++v++  
  CCG92637.1  88 LVRLFRKPP---------STPMSIDLLPAFAAEFLFSFALVFVVLNVATAKGTAG-NSFYGLAIGMTVMVGA 149
                 ******995.........2344577889*****************9998887777.567*********9976 PP

  == domain 2  score: 45.2 bits;  conditional E-value: 4.8e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHH CS
         MIP   5 vkflravlAEflatlllvfigvgsalnvkkkvsslaslvsvtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllGa 103
                 +++l a+ AEfl ++ lvf+++ +a   +k ++        ++ + a+  g++++v+ +++++iSG+ +NPav l+++  + + ++   lY++a  lG+
  CCG92637.1 102 IDLLPAFAAEFLFSFALVFVVLNVAT--AKGTA------GNSFYGLAI--GMTVMVGAFAVGDISGGVFNPAVALSICSLGLVAIKNLWLYLIADFLGG 190
                 56778899999999999998877444..22221......124555555..99*********************************************** PP

                 HHHHHHHHHHCHH CS
         MIP 104 ivaaallklltkg 116
                 +vaa + k++ k+
  CCG92637.1 191 FVAAQTFKIVSKE 203
                 *****99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1566.63
//
Query:       CCG92638.1  [L=473]
Description: Phosphodiesterase/alkaline phosphatase D [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-86  290.2   0.0    2.6e-86  289.8   0.0    1.1  1  PhoD             PhoD-like phosphatase
    3.5e-26   91.6   0.0    6.7e-26   90.7   0.0    1.5  1  PhoD_N           PhoD-like phosphatase, N-terminal domain
      0.001   19.6   0.1      0.013   16.0   0.1    2.2  2  Metallophos      Calcineurin-like phosphoesterase
     0.0022   18.5   0.1     0.0039   17.7   0.1    1.4  1  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> PhoD  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.8   0.0   5.8e-90   2.6e-86       2     344 ..     132     441 ..     131     445 .. 0.91

  Alignments for each domain:
  == domain 1  score: 289.8 bits;  conditional E-value: 5.8e-90
        PhoD   2 avvSCqnyeagyfnayrelaeeedlDlvlhlGDyiYeygpgeyaseaaelgreveppkeivtladYReryaqyktdadlqaahaaapfivvwDDHEvaN 100
                 a++SCq+y ag+++ay+ + ++ ++D+++hlGD iYe          +++  +  p   +++la YR+++++y+td+dlq+a  ++p +++wDDHEv+N
  CCG92638.1 132 ALASCQHYGAGFYTAYKYMLQD-NPDFIIHLGDWIYEFPV------YGTVCARPDPVGIAFDLATYRAKHRLYRTDPDLQEALRNFPLFAIWDDHEVQN 223
                 789*******************.***************42......4556666666689**************************************** PP

        PhoD 101 nswsggaenhqeetegdfekrkaaAlqAyfEwmPireakpgeeeriyrsfeyGdladlflLDtRqyrrdqavsyegd.eleaaeaevkdpartlLGeeQ 198
                 + ++g+a            +r +aA+qA+fE++Pir++   +e +++rsf++G+l++ fl+D Rqyr++   + + + + ea+++ +++p r++LG+eQ
  CCG92638.1 224 D-YAGRALSFY------NPDRMKAAYQAFFEYLPIRQQ---KEWKLFRSFKIGNLLECFLTDGRQYREEDVWHPAFHaPVEATMQ-ASAPGRSMLGSEQ 311
                 *.***888777......46899***************9...689**************************997775535555544.478********** PP

        PhoD 199 eqwLkaeLkasrarWkvlaqqvlmskvdldaelaegalpvnlDawdGypaeRerlletikeakirnvVvLtGDvHaawandldykdpdgeavgvEfvtg 297
                 ++wL ++Lk+s+a+Wk++a+  +m++++     + g+ p+nlD+wdG++ eR+++l+ti++++irnvVvL+GD+H +  ++l     dge+++ E+ t 
  CCG92638.1 312 RNWLIDSLKSSHAQWKFIASGDMMMDIK-----LGGK-PINLDQWDGFAWERNEILKTIRDNQIRNVVVLSGDTHVFSFGKL---LLDGEEIACEIGTA 401
                 ************************9999.....4455.9*******************************************...777778******** PP

        PhoD 298 svssgglgeylaeaadateeallaanpelkytelderGyveldltee 344
                 ++ss++ + + +       e++l++np++ + ++++rGyv +++++ 
  CCG92638.1 402 GISSPAGKIEGK-------EKILKENPHILFNDTEHRGYVLIEISPS 441
                 *****9998888.......6688********************9875 PP

>> PhoD_N  PhoD-like phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   1.5e-29   6.7e-26       2      90 .]      35     121 ..      34     121 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 1.5e-29
      PhoD_N   2 GVasGDptadsvilWTRvapeseerpvrvevevaedeafkkvvrkgtalatseldytvkvevtgLkpgqeyfYrfragsesspvGrtrT 90 
                 GVasGDpt++svilW+R++ +   ++++v++eva d++fkk+ ++g + +++e+dyt+k ev+gL+p++ y+Yr   +++ sp+Grt+T
  CCG92638.1  35 GVASGDPTTNSVILWSRIESS--ISTIDVQYEVALDPEFKKLIASGIVSTSPEIDYTLKKEVQGLEPAKIYYYRWSWNGHFSPIGRTKT 121
                 9******************44..48***************************************************************9 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   2.9e-06     0.013       2     167 ..     130     331 ..     129     382 .. 0.59
   2 ?    2.9   0.0      0.03   1.3e+02      13      45 ..     349     383 ..     327     405 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.9e-06
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS..........................HHHHHHHHHHHHHHHH.......... CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrg..........................dlekellellaalvky.......... 63 
                  ri++ +  H    g++++++ k++   l++ +pd+++++GD++++                                          +          
   CCG92638.1 130 RIALASCQH---YGAGFYTAYKYM---LQD-NPDFIIHLGDWIYEFpvygtvcarpdpvgiafdlatyrakhR--------------Lyrtdpdlqea 206
                  677777778...555566666655...566.9*********99999877788888876655443333332220..............14456666666 PP

                  ..TSEEEEEC-TTSCHHHHHHHHHHHHHHHHHHHEHHHCEEETSEEEE.........EETTE....EEEEEEESECEEETHHHHHHHHHHHSCHHHHC CS
  Metallophos  64 ..pipvylllGNHegfeeellnkygylgifsepwrsdaevfnnlplas.........lgsgs....lkvlllhGgspellvsldklgslnleleapep 146
                    + p++++   He  ++++  +  ++++  + +  ++ +f++lp+ +         +   +    l+ +l +G  +++ + ++++ + + e +    
   CCG92638.1 207 lrNFPLFAIWDDHE-VQNDYAGRALSFYNPDRMKAAYQAFFEYLPIRQqkewklfrsF---KignlLECFLTDGRQYREEDVWHPAFHAPVEATM--- 297
                  677788********.7778888888888888888888999999999995555544322...0334566666666622222233333333333333... PP

                  C.............HHHHHHHHHHTTCSEEEEEE CS
  Metallophos 147 g.............dewlkdlekrekadwvivlg 167
                  +              +wl d+ k ++a+w+++ +
   CCG92638.1 298 QasapgrsmlgseqRNWLIDSLKSSHAQWKFIAS 331
                  1333667788888888888888888888888777 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.03
                  TCCTHHHHHHHHHHHHHHHTTESEEEEEST..SSS CS
  Metallophos  13 lgggqlddllkllddllreekpdlvllaGD..lvd 45 
                    +g  ++ +++l+ +++++ +++v+l GD  ++ 
   CCG92638.1 349 QWDGFAWERNEILKTIRDNQIRNVVVLSGDthVFS 383
                  5567778889999******999********77333 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   8.8e-07    0.0039      10      94 .]      39     121 ..      34     121 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 8.8e-07
  Pur_ac_phosph_N  10 edtstsmtvsWitpe.ktkksvvrygtssdalestaeatsstyettnyksgyshkatltgLepgttYyYrvgddeggwSevysfkT 94 
                      +d++t  ++ W   e + ++  v+y+ + d + ++  a+  +   t+ +  y+ k +++gLep + YyYr   ++ ++S+++++kT
       CCG92638.1  39 GDPTTNSVILWSRIEsSISTIDVQYEVALDPEFKKLIASGIVS--TSPEIDYTLKKEVQGLEPAKIYYYRWSWNG-HFSPIGRTKT 121
                      4488888888988653557778888888777766666664443..4678999*******************9999.9**9999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3175.08
//
Query:       CCG92639.1  [L=107]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.02   14.3  11.3      0.024   14.0  11.3    1.1  1  Glycoprotein_G   Pneumovirus attachment glycoprotein G
      0.032   15.2   3.7      0.042   14.8   3.7    1.3  1  DUF4834          Domain of unknown function (DUF4834)
      0.037   13.8   1.0       0.04   13.7   1.0    1.1  1  Connexin         Connexin
      0.097   13.1   2.2       0.13   12.7   2.2    1.2  1  DUF1178          Protein of unknown function (DUF1178)
        0.2   10.4   0.9       0.22   10.2   0.9    1.0  1  Ureide_permease  Ureide permease
        1.3    7.7   2.9        1.2    7.8   2.9    1.1  1  Presenilin       Presenilin
        1.6    8.6   7.1        2.1    8.2   6.6    1.5  1  DUF4028          Protein of unknown function (DUF4028)
        4.5    6.7  15.9        5.1    6.5  15.9    1.0  1  LYRIC            Lysine-rich CEACAM1 co-isolated protein fami


Domain annotation for each model (and alignments):
>> Glycoprotein_G  Pneumovirus attachment glycoprotein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  11.3   1.1e-05     0.024     180     235 ..      21      79 ..      17      96 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
                     -XXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXX...XXXXXXXXXXXXXXX CS
  Glycoprotein_G 180 ipekkpkkkptikpkkkPklkttkkdtktlakklkkettik...rtsketkkttktnit 235
                     i+ k+ + +pt++ +++P+  ttk d  t  +++k+   ++    t k+tkk++k+++ 
      CCG92639.1  21 ISGKAQSTQPTTQTQNNPQGITTKEDKNTGQNQSKEGKKHHnktTTGKKTKKKIKKDTK 79 
                     67889999******************999877777766555222577899999999886 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   3.7   1.9e-05     0.042       9      82 ..       8      77 ..       1      95 [. 0.38

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-05
     DUF4834  9 ifiiailviglsilsvilrtvfglgsrkkssksaqkqfgnstnsnqqksqsrsetkeegeiieeersekeakrk 82
                +++ + l++g+si+s   ++       ++++++  ++ +++  +n+ ++qs++ +k+++++++ ++++k++k+ 
  CCG92639.1  8 FILTLSLFFGVSIISGKAQSTQP----TTQTQNNPQGITTKEDKNTGQNQSKEGKKHHNKTTTGKKTKKKIKKD 77
                33334455666666665555522....22222222222222222222222222222222222222222222222 PP

>> Connexin  Connexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.0   1.8e-05      0.04      77     148 ..       3      74 ..       1      94 [. 0.52

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
    Connexin  77 vlqiilvstPsllylvyvlhkiakeek.ekek.........eeeekeeeekeeekkkkkekkkkkkkeeekekkkeegkrri 148
                 +l+ +++ t sl++ v ++   a++++ ++++         +         e++++ ++++k+ kk++ +k+++ +++k++i
  CCG92639.1   3 HLKTVFILTLSLFFGVSIISGKAQSTQpTTQTqnnpqgittK---------EDKNTGQNQSKEGKKHH-NKTTTGKKTKKKI 74 
                 58899999*9*9999999998887777544443344433332.........33333322222222222.2222222222222 PP

>> DUF1178  Protein of unknown function (DUF1178)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.2   5.6e-05      0.13      52     105 ..      41      95 ..      21     100 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.6e-05
     DUF1178  52 vakskkkaaeaaeaeaaaaaakaaaa.aekekeleaalaelrrkveknsedVGer 105
                 ++++++k++ ++++++ +++++++++ ++++k++++ ++++ ++vek+++dVG +
  CCG92639.1  41 ITTKEDKNTGQNQSKEGKKHHNKTTTgKKTKKKIKKDTKKFGHDVEKSFKDVGGE 95 
                 4444444444444444444333333368899**********************76 PP

>> Ureide_permease  Ureide permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.9    0.0001      0.22     114     185 ..      14      87 ..       5     100 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0001
  Ureide_permease 114 vllgsavhssnaadnkeklskskseekeetkeeekkeeesek..kkeekdleegekaaekakagtaeflielee 185
                      +++g  + s  a+ ++   +++++ +  +tke++++ ++++k  kk+++++ +g+k+++k+k+ t++f  ++e+
       CCG92639.1  14 LFFGVSIISGKAQSTQPTTQTQNNPQGITTKEDKNTGQNQSKegKKHHNKTTTGKKTKKKIKKDTKKFGHDVEK 87 
                      566666666666666655555554444444444444333333114455778888899***********999986 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.9   0.00055       1.2     232     290 ..      34      74 ..      12     107 .] 0.33

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00055
  Presenilin 232 vaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeess 290
                 ++++ +  +++++k++ +++s                  +e +++++++++ ++++++ 
  CCG92639.1  34 TQNNPQGITTKEDKNTGQNQS------------------KEGKKHHNKTTTGKKTKKKI 74 
                 111111111111111111111..................11111111111111111111 PP

>> DUF4028  Protein of unknown function (DUF4028)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.6   0.00093       2.1      15      53 ..      42      80 ..      34      89 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00093
     DUF4028 15 ctvqnknGdqyvkkwfrkhenneklGrptfkevekdwke 53
                 t ++kn  q   k  +kh n    G+ t k+++kd k+
  CCG92639.1 42 TTKEDKNTGQNQSKEGKKHHNKTTTGKKTKKKIKKDTKK 80
                57789*******************************985 PP

>> LYRIC  Lysine-rich CEACAM1 co-isolated protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  15.9    0.0023       5.1     115     173 ..      27      85 ..      22      98 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0023
       LYRIC 115 kaqpNGravaeaqeevkaaeeket.qkqpppaekkaekskevkknKKKakqdvKevqsvs 173
                  +qp  ++ +++q  ++++e+k+t q+q+++ +k  +k++  kk+KKK k+d K+  +  
  CCG92639.1  27 STQPTTQTQNNPQ-GITTKEDKNTgQNQSKEGKKHHNKTTTGKKTKKKIKKDTKKFGHDV 85 
                 4577777776665.56666666665888899999999999*************9876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2396  (0.133638); expected 358.6 (0.02)
Passed bias filter:                      786  (0.0438396); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 695.60
//
Query:       CCG92640.1  [L=369]
Description: DNA polymerase IV [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-44  150.2   0.0    6.1e-44  149.6   0.0    1.3  1  IMS              impB/mucB/samB family
    2.3e-18   67.0   0.5    4.6e-18   66.0   0.5    1.5  1  IMS_C            impB/mucB/samB family C-terminal domain
    4.1e-06   26.8   0.0    1.1e-05   25.5   0.0    1.8  1  IMS_HHH          IMS family HHH motif
     0.0019   18.0   0.0     0.0047   16.7   0.0    1.6  1  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
     0.0022   18.3   0.0       0.13   12.6   0.0    2.7  2  DUF1805          Domain of unknown function (DUF1805)
     0.0028   17.8   0.0      0.007   16.6   0.0    1.6  1  Cdd1             Pathogenicity locus
      0.006   17.2   0.0      0.018   15.7   0.0    1.8  1  HHH_5            Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.6   0.0   2.4e-47   6.1e-44       1     150 []      24     168 ..      24     168 .. 0.96

  Alignments for each domain:
  == domain 1  score: 149.6 bits;  conditional E-value: 2.4e-47
                 EEETTHHHHHHHHHT.T-TTS-EEEEET.....TEEEEE-HHHHTTT--TTSBHHHHHTTHTT-EEEEEE-HHHHHHHHHHHHHHHHH-S..EEEEETT CS
         IMS   1 iDmdaFyasverardpeLkgkPvvvaqgsek.rgiviavsyeArayGvkrgmrikeakklcpdlivvkvdlekyrraskkileilkrfispkvekasiD 98 
                 +D+daFyasve +++peLk++P+vv+ gs + rg+v ++syeAr+yGv++gm+++ a +lcp li+v+++ ++y+++s+k++++l++f s++++k+siD
  CCG92640.1  24 VDLDAFYASVEILQHPELKETPMVVCMGSLQgRGVVSTASYEARKYGVRSGMPLRRAISLCPGLILVPAHHALYEEYSAKVYALLRTF-SERIQKVSID 121
                 7*************************9977689*******************************************************.88******** PP

                 EEEEE-HHHHHHHH-SHHHHHHHHHHHHHHHH---EEEEEESSHHHHHHHHH CS
         IMS  99 EayldltgleelaesegaalakelrkaikeelgltvsiGiasnkllAKlase 150
                 Ea+l+l  ++e      +++a +++kaike+lgl+ +iG+asnkl+AK+a++
  CCG92640.1 122 EACLELDPHIEP-----EKMALAIQKAIKEKLGLPSTIGVASNKLVAKIACD 168
                 ********8774.....4679*****************************85 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.5   1.8e-21   4.6e-18       5     113 ..     251     360 ..     247     363 .. 0.93

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 1.8e-21
       IMS_C   5 rpepksissektfpepydesk.lkkelreLaeelarrLrdkglvartitlklrysdfh.asrsatLprptsdtreileaalkLlrrlidepglpirlig 101
                 + +p+s+s e tf +++++++ l+kel+ +++ la++L+ +glva+t+ +klrysdf+   r+ tL+ pt ++ ei+   + Ll++  + + + +rlig
  CCG92640.1 251 ESKPRSMSREVTFNKDTKNLDlLRKELCGMSQTLAEDLKIQGLVAKTVFIKLRYSDFStLLRQLTLTSPTHNPLEIASCGILLLKANLQ-KDRAVRLIG 348
                 56899**********7777779*********************************9999*************************99999.********* PP

       IMS_C 102 vsasnlvekaes 113
                 +++ nl e++++
  CCG92640.1 349 LGVRNLIERNKT 360
                 *******77655 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   4.2e-09   1.1e-05       4      32 .]     183     211 ..     180     211 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 4.2e-09
     IMS_HHH   4 vkefLwplpitkipGiGgklgekLeklGi 32 
                 +k+fL+plp+ kip +G+ + +kL+++G+
  CCG92640.1 183 EKTFLAPLPVEKIPEVGPATVKKLHTMGV 211
                 799************************97 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.8e-06    0.0047       5      31 ..     194     221 ..     193     229 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.8e-06
  DNA_pol_lambd_f   5 kvyGVGpktAkkwyakGirtledlra.k 31 
                      k+  VGp+t kk++ +G+ t++dl +  
       CCG92640.1 194 KIPEVGPATVKKLHTMGVITIDDLAKiP 221
                      7899********************9953 PP

>> DUF1805  Domain of unknown function (DUF1805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   5.3e-05      0.13      38      61 ..      59      82 ..      56      83 .. 0.89
   2 ?    2.6   0.0     0.068   1.8e+02      16      35 ..     201     219 ..     190     232 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.3e-05
                -SEE-HHHHHTT--TT-BHHHHGG CS
     DUF1805 38 vesvteaAeelGikeGmtgkeaLe 61
                v  ++ +A+++G++ Gm ++ a++
  CCG92640.1 59 VSTASYEARKYGVRSGMPLRRAIS 82
                77899***************9996 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.068
                 -EEE-....-S--SHHHHHH CS
     DUF1805  16 laarvivagsGVrtledlla 35 
                 + +++ + ++GV t++dl +
  CCG92640.1 201 ATVKK-LHTMGVITIDDLAK 219
                 33444.6669*******986 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.7e-06     0.007       9      46 ..     193     230 ..     189     237 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.7e-06
        Cdd1   9 qdiPniGkalaedlvelGirsveelkgedpeelyekle 46 
                 ++iP++G+a+ ++l+ +G+ ++++l++   ++l ek+ 
  CCG92640.1 193 EKIPEVGPATVKKLHTMGVITIDDLAKIPEQQLIEKFG 230
                 79************************999999988865 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.8e-06     0.018       5      37 ..     193     225 ..     190     231 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.8e-06
                 HTSTT--HHHHHHHHTTT--SHHHHHHS-HHHH CS
       HHH_5   5 lsvsGiGpktAlallsaGiesvedlaaadveeL 37 
                  +++ +Gp+t+++l+  G+ +++dla+  +++L
  CCG92640.1 193 EKIPEVGPATVKKLHTMGVITIDDLAKIPEQQL 225
                 689***********************9877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2574.07
//
Query:       CCG92641.1  [L=38]
Description: hypothetical protein MFUM_720006 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1141  (0.0636399); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.47
# Mc/sec: 242.76
//
Query:       CCG92642.1  [L=334]
Description: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (Queuine synthetase) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.8e-101  338.9   0.0   3.1e-101  338.7   0.0    1.0  1  Queuosine_synth  Queuosine biosynthesis protein


Domain annotation for each model (and alignments):
>> Queuosine_synth  Queuosine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.7   0.0  1.7e-105  3.1e-101       2     325 .]       2     333 ..       1     333 [. 0.92

  Alignments for each domain:
  == domain 1  score: 338.7 bits;  conditional E-value: 1.7e-105
                      -TT-----GGGB-SS--SSGGGSEEEEEETTTTEEEEEEGGGGGGG--TT-EEEEEEEEE-S-EEEEE--.---EEEEEEEE......EEEEEE CS
  Queuosine_synth   2 sdfdfeLpeeliAqePaeeRdesrLlvldrktgeiehkrfrdlvdlLregdlLvlNdtkviparllgekektggkvevlllkel....wealvk 91 
                      ++++f+Lp+eliA +P+ +Rd+++L+v+drktg++ h +f+dl+++L+++dlLvlN++kv+pa +    e    k+++l+++ l    w+++++
       CCG92642.1   2 EEYSFSLPKELIALDPTPQRDHCKLMVVDRKTGRFYHCQFADLPQFLSKEDLLVLNNSKVLPAFFKSMDE----KTTFLFVEALtpyqWKVMAS 91 
                      79*************************************************************9987654....45555555445566****** PP

                      S-TT--TT-EEEE..........EEEEEEEETT.S-EEEEEE....HHHHHH---------...............------------------ CS
  Queuosine_synth  92 pakklkageklel..........lkaevlekeeegerlvkfeeeleelleelGevplppyikr.............dkerYqtvyakeegsvaa 162
                      p+k++k+++ + l          l+a++++k ++g  +++f++  e  le+lG  plppyi++             d e Yqtv+a+++gs+aa
       CCG92642.1  92 PSKHVKSDSIVWLkksqkdgyceLEAKIVSKLSDGYYILEFDK--EPNLESLGLPPLPPYIRKlrrknnrpeidqqDMEYYQTVFAQRPGSIAA 183
                      ******************************94489******98..789*************5566778889998878899************** PP

                      --GGGG--HHHHHHHHHHT-EEEEEEEEE--------------------EEEEE-HHHHHHHHHHHHHT--EEEESHHHHHHHH...H...HTS CS
  Queuosine_synth 163 PtAglhFteelleklkakgvevaevtLhvGlgtfrpvevedieehkmhsEryevseetaeainaakaeggrviAVGTTsvRalEsaaseegaak 256
                      PtAglhF++ ll+k k     +a++tLh+G gtfrp++ +++++ k++ E++ ++++    ++++ +eg+r++A+GTT+vR+lE++      ++
       CCG92642.1 184 PTAGLHFSKGLLSKFK-----TAFITLHIGPGTFRPLTPKQLKTAKLEPEYFIIDAN----LKKMYKEGQRIVAIGTTVVRVLETIK----NLE 264
                      ************9875.....67*******************************976....6777889****************555....589 PP

                      SEEE-------SS---SS-SEEEEE---TT-HHHHHHHHHH-HHHHHHHHHHHHHTT--BSTTS-EEEE CS
  Queuosine_synth 257 aasgetdlfiypgykfkvvdaLlTnfhlPkStllmlvsAfagrekileaYkeAveekYrFfsyGDamli 325
                      +++g+tdlfi+p+++f+ + aL+TnfhlPkS+l++l++Afag++ +++aY+eA++++YrF+syGDamli
       CCG92642.1 265 PQEGWTDLFIFPPFQFQRTGALITNFHLPKSSLFLLTCAFAGTDLLKAAYEEAIKKGYRFYSYGDAMLI 333
                      9*******************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2374.73
//
Query:       CCG92643.1  [L=276]
Description: Transcriptional regulator, GntR family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-34  118.9   0.2    2.2e-34  118.3   0.2    1.3  1  UTRA            UTRA domain
    1.7e-19   69.2   0.1    4.9e-19   67.7   0.1    1.8  1  GntR            Bacterial regulatory proteins, gntR family
    3.8e-06   26.7   0.8    0.00025   20.9   0.1    2.8  2  HTH_11          HTH domain
    3.2e-05   23.4   1.0      0.002   17.7   0.1    2.7  2  HTH_24          Winged helix-turn-helix DNA-binding
    3.3e-05   23.7   0.1    0.00053   19.9   0.1    2.3  2  MarR            MarR family
    4.4e-05   23.1   0.4       0.23   11.3   0.1    3.3  3  HTH_23          Homeodomain-like domain
      9e-05   22.1   0.0    0.00023   20.9   0.0    1.6  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    9.6e-05   22.2   0.1      0.017   15.0   0.0    3.1  3  TrmB            Sugar-specific transcriptional regulator TrmB
    0.00035   20.2   0.1    0.00066   19.3   0.1    1.5  1  HTH_41          Helix-turn-helix domain
    0.00042   20.4   0.6        1.5    9.0   0.0    3.4  3  HTH_28          Helix-turn-helix domain
    0.00043   20.1   0.2       0.11   12.4   0.0    2.6  2  MarR_2          MarR family
     0.0014   18.5   0.1      0.046   13.7   0.0    2.8  3  HTH_36          Helix-turn-helix domain
     0.0048   16.8   0.8      0.042   13.8   0.0    2.8  3  HTH_Crp_2       Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.028   14.2   0.0    1.7  1  HTH_IclR        IclR helix-turn-helix domain
      0.021   15.2   0.1       0.14   12.5   0.0    2.1  2  Rrf2            Transcriptional regulator
      0.023   14.6   0.1        0.1   12.5   0.0    2.1  2  HTH_12          Ribonuclease R winged-helix domain
      0.026   15.2   0.0      0.061   14.0   0.0    1.6  1  RPA_C           Replication protein A C terminal
      0.026   14.7   0.1        3.5    7.9   0.0    2.9  2  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.032   14.4   0.0        2.9    8.1   0.0    2.4  2  B-block_TFIIIC  B-block binding subunit of TFIIIC
       0.04   13.6   0.7        1.2    8.9   0.0    2.8  3  Sigma70_r4_2    Sigma-70, region 4
       0.05   13.2   0.0       0.11   12.1   0.0    1.5  1  RP-C            Replication protein C N-terminal domain
      0.074   12.6   0.0       0.27   10.8   0.0    1.8  2  GerE            Bacterial regulatory proteins, luxR family
       0.12   12.2   0.1        3.9    7.4   0.0    2.7  3  TFIIE_alpha     TFIIE alpha subunit
       0.15   12.4   0.0        2.6    8.4   0.0    2.3  2  Mnd1            Mnd1 HTH domain
       0.15   12.1   0.1        6.1    6.9   0.0    2.9  3  HTH_Tnp_IS630   Transposase
       0.16   11.8   0.1          2    8.2   0.0    2.4  2  LexA_DNA_bind   LexA DNA binding domain
       0.21   11.5   0.4        0.6   10.1   0.1    1.8  2  TBPIP           TBPIP/Hop2 winged helix domain


Domain annotation for each model (and alignments):
>> UTRA  UTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.2   3.3e-37   2.2e-34       2     140 ..      98     236 ..      97     237 .. 0.99

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 3.3e-37
                 CCCSEEEEEEEEEEEE--HHHHHHHTS-TTSEEEEEEEEEEETTEEEEEEEEEEEGGGTTTCHHHHHHCS-HHHHHHHHHTTSEEEEEEEEEEEE--HH CS
        UTRA   2 qglepktevlsleevpasaeiaeaLglpagepvlrieRlrladgepvaleesylpaslvpdlleedleegslyayleerlgvpitraeetiearladae 100
                 +g ep+++vl +++++as++ia++Lg+++ +  +r++Rlrl +g+p+a++++++p+ ++  l+ +dle +++y++l++++++p+ r++  iea++ad+e
  CCG92643.1  98 AGIEPSSKVLFYAQENASKDIAKELGIEERSVCVRLDRLRLGNGKPIAFDRTWIPLYYARLLDGRDLERETIYQILQREYKIPVIRGRYLIEAVNADRE 196
                 799************************************************************************************************ PP

                 HHHHHTSTTT-EEEEEEEEEEETTSCEEEEEEEEEETTTE CS
        UTRA 101 eaelLgisagspvLviervtydadgrpveysrsyyrgdrf 140
                  a++L+i+++++vL i+r++++  ++p+ + +  yr dr+
  CCG92643.1 197 LASYLEIKENQAVLAIHRTSFTVSDQPIYFQKRFYRCDRV 236
                 **************************************96 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.1   7.3e-22   4.9e-19       4      64 .]      16      76 ..      13      76 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 7.3e-22
                HHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  4 qvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                 v + +r++I sg+l  G++LPse+eL++ f++sr tvR+AL++Le+egl+ r+qg G fV
  CCG92643.1 16 VVSQWIRNEIDSGRLGIGAQLPSEKELQKTFNISRITVRRALQTLESEGLIYRKQGLGSFV 76
                57888*****************************************************998 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   3.7e-07   0.00025      19      53 ..      40      73 ..      37      74 .. 0.90
   2 ?    3.1   0.0      0.13        89      18      40 ..     115     137 ..     107     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.7e-07
      HTH_11 19 eeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrG 53
                +eL + +n+Sr tvrr +++Le+ g  I+ ++g G
  CCG92643.1 40 KELQKTFNISRITVRRALQTLESEG-LIYRKQGLG 73
                89***********************.888887765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.13
      HTH_11  18 geeLAeeLnvSrrtvrrdIkaLe 40 
                 ++++A+eL++ +r v  ++++L+
  CCG92643.1 115 SKDIAKELGIEERSVCVRLDRLR 137
                 589*********99987777775 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1     3e-06     0.002      21      47 ..      40      66 ..      38      67 .. 0.95
   2 ?    3.6   0.0     0.072        48      21      41 ..     116     136 ..     105     137 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3e-06
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGlI 47
                +eL +  ++S+ tv+r l+ Le+eGlI
  CCG92643.1 40 KELQKTFNISRITVRRALQTLESEGLI 66
                89************************9 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.072
      HTH_24  21 reLAerlglSpstvnrrlkrL 41 
                 +++A++lg+    v  rl+rL
  CCG92643.1 116 KDIAKELGIEERSVCVRLDRL 136
                 89*******999998888888 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   7.9e-07   0.00053      19      51 ..      38      70 ..      34      73 .. 0.94
   2 ?    1.1   0.0      0.57   3.8e+02      21      41 ..     116     136 ..     107     137 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 7.9e-07
                EHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR 19 svseLakklgvskstvtrvldrLekkGlieRsk 51
                s +eL+k +++s+ tv r+l +Le +Gli+R++
  CCG92643.1 38 SEKELQKTFNISRITVRRALQTLESEGLIYRKQ 70
                679****************************98 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.57
                 HHHHHHHTS-HHHHHHHHHHH CS
        MarR  21 seLakklgvskstvtrvldrL 41 
                 +++ak lg++  +v   ldrL
  CCG92643.1 116 KDIAKELGIEERSVCVRLDRL 136
                 69*********9999999998 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00035      0.23      21      46 ..      40      65 ..      38      68 .. 0.87
   2 !    7.1   0.0    0.0072       4.8      21      40 ..     116     135 ..     106     141 .. 0.81
   3 ?    0.5   0.0      0.85   5.7e+02      31      40 ..     166     175 ..     163     178 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00035
      HTH_23 21 reIAreLgvsrrTvyrwlkryreeGl 46
                +e  + +++sr Tv+r l++ + eGl
  CCG92643.1 40 KELQKTFNISRITVRRALQTLESEGL 65
                677899**************977997 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0072
      HTH_23  21 reIAreLgvsrrTvyrwlkr 40 
                 ++IA+eLg+ +r v+  l r
  CCG92643.1 116 KDIAKELGIEERSVCVRLDR 135
                 79************966666 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.85
      HTH_23  31 rrTvyrwlkr 40 
                 r T+y++l+r
  CCG92643.1 166 RETIYQILQR 175
                 88*****998 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.4e-07   0.00023      18      49 ..      40      71 ..      38      75 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.4e-07
    HTH_DeoR 18 eelvellgvSeaTiRRDLneLeeqglltRthG 49
                +el   +++S  T+RR L++Le +gl+ R  G
  CCG92643.1 40 KELQKTFNISRITVRRALQTLESEGLIYRKQG 71
                689999*********************99876 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.6e-05     0.017      26      57 ..      40      71 ..      37      77 .. 0.93
   2 ?    2.2   0.0      0.25   1.7e+02      21      45 ..     111     135 ..     105     138 .. 0.74
   3 ?    0.5   0.0      0.86   5.7e+02      33      45 ..     163     175 ..     156     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.6e-05
                CHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB 26 deiaeelgvprskvYevLrsLedkGlVerekg 57
                +e+ +  +++r +v ++L+ Le+ Gl++r++g
  CCG92643.1 40 KELQKTFNISRITVRRALQTLESEGLIYRKQG 71
                7999*************************986 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.25
                 CCCHHCHHCCCTTSSCHCHHHHHHH CS
        TrmB  21 gpatadeiaeelgvprskvYevLrs 45 
                 ++   ++ia+elg+++ +v   L +
  CCG92643.1 111 QENASKDIAKELGIEERSVCVRLDR 135
                 566778*********9988665555 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.86
                 TSSCHCHHHHHHH CS
        TrmB  33 gvprskvYevLrs 45 
                 +++r ++Y++L++
  CCG92643.1 163 DLERETIYQILQR 175
                 6799*******96 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   9.9e-07   0.00066       2      48 .]      32      76 ..      31      76 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 9.9e-07
      HTH_41  2 vGdRlktIeelakeleLSvGlvQkALklLeddkaislerrGrlGtfl 48
                +G++l++ +el k + +S+ +v  AL+ Le+++ i+  r+  lG+f+
  CCG92643.1 32 IGAQLPSEKELQKTFNISRITVRRALQTLESEGLIY--RKQGLGSFV 76
                799*******************************98..444577775 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0022       1.5      22      41 ..      46      65 ..      40      72 .. 0.85
   2 ?    6.6   0.0     0.013       8.3       6      37 ..     106     137 ..     106     141 .. 0.84
   3 ?    0.5   0.0         1   6.7e+02      26      35 ..     166     175 ..     163     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0022
      HTH_28 22 lgisrrtvyrWikryeegGi 41
                ++isr tv+r ++ +e++G+
  CCG92643.1 46 FNISRITVRRALQTLESEGL 65
                9****************885 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.013
      HTH_28   6 ikllaaGhsvreaArelgisrrtvyrWikrye 37 
                 ++ +a+ ++ +++A+elgi +r+v + + r++
  CCG92643.1 106 VLFYAQENASKDIAKELGIEERSVCVRLDRLR 137
                 5678999999************9977777766 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 1
      HTH_28  26 rrtvyrWikr 35 
                 r+t+y+ ++r
  CCG92643.1 166 RETIYQILQR 175
                 89******99 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00017      0.11      25      56 ..      40      71 ..      32      73 .. 0.91
   2 ?    4.8   0.0      0.04        26      24      45 ..     115     136 ..     106     137 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00017
                HHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 25 gelarrlglsksavsrilkrLvaaGLverrpg 56
                +el +++++s+ +v r+l+ L++ GL+ r+ g
  CCG92643.1 40 KELQKTFNISRITVRRALQTLESEGLIYRKQG 71
                6888999********************99876 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.04
                 HHHHHHHHTSSHHHHHHHHHHH CS
      MarR_2  24 vgelarrlglsksavsrilkrL 45 
                  +++a++lg++  +v  +l+rL
  CCG92643.1 115 SKDIAKELGIEERSVCVRLDRL 136
                 58***************99998 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   6.9e-05     0.046      26      55 .]      37      66 ..      33      66 .. 0.92
   2 ?    1.2   0.0      0.56   3.7e+02      29      43 ..     116     130 ..     108     138 .. 0.80
   3 ?   -1.1   0.0       2.9   1.9e+03      30      46 ..     196     212 ..     195     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.9e-05
      HTH_36 26 psqetlakrlglsknTvsraikeLeqlGyi 55
                ps + l+k +++s+ Tv+ra++ Le  G+i
  CCG92643.1 37 PSEKELQKTFNISRITVRRALQTLESEGLI 66
                88899*********************9998 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.56
      HTH_36  29 etlakrlglsknTvs 43 
                 +++ak lg+ +++v 
  CCG92643.1 116 KDIAKELGIEERSVC 130
                 79********99985 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.9
      HTH_36  30 tlakrlglsknTvsrai 46 
                  la+ l++++n+++ ai
  CCG92643.1 196 ELASYLEIKENQAVLAI 212
                 5999*******999887 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.3e-05     0.042      29      54 ..      44      69 ..      26      78 .. 0.85
   2 ?   -0.8   0.0       2.2   1.5e+03      25      46 ..     116     137 ..     113     138 .. 0.84
   3 ?   -1.7   0.0       4.3   2.9e+03      34      44 ..     165     175 ..     163     200 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.3e-05
                HHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 29 smlGltretvsrilseLkreglisrg 54
                   +++r tv r+l+ L+ egli r+
  CCG92643.1 44 KTFNISRITVRRALQTLESEGLIYRK 69
                66799******************964 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.2
                 HHHHHHTTSSHHHHHHHHHHHH CS
   HTH_Crp_2  25 eelAsmlGltretvsrilseLk 46 
                 +++A  lG+   +v   l +L+
  CCG92643.1 116 KDIAKELGIEERSVCVRLDRLR 137
                 699*****99999987777775 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 4.3
                 SHHHHHHHHHH CS
   HTH_Crp_2  34 tretvsrilse 44 
                  ret+ +il++
  CCG92643.1 165 ERETIYQILQR 175
                 58888888876 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.2e-05     0.028      22      50 ..      40      68 ..      33      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.2e-05
                HHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 22 selArrtglpkStvhRlLqtLvelGyveq 50
                +el + + +++ tv+R LqtL+ +G++ +
  CCG92643.1 40 KELQKTFNISRITVRRALQTLESEGLIYR 68
                688889999999**************987 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00021      0.14      27      61 ..      38      72 ..      33      76 .. 0.89
   2 ?   -0.7   0.0       2.9   1.9e+03      27      42 ..     114     129 ..     108     137 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00021
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
        Rrf2 27 sseeiaerqnispsylekilakLrkaglvksvrGk 61
                s +e+ + +nis+  +++ l++L+ +gl+  ++G 
  CCG92643.1 38 SEKELQKTFNISRITVRRALQTLESEGLIYRKQGL 72
                558999***********************999995 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.9
                 -HHHHHHHHTS-HHHH CS
        Rrf2  27 sseeiaerqnispsyl 42 
                 +s++ia++ +i+++ +
  CCG92643.1 114 ASKDIAKELGIEERSV 129
                 799*******998765 PP

>> HTH_12  Ribonuclease R winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00016       0.1      22      51 ..      41      69 ..      32      78 .. 0.80
   2 ?   -2.3   0.0       6.8   4.5e+03      16      32 ..     115     126 ..     112     137 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00016
      HTH_12 22 eLkkrgydigeravRyrLrkleergltrrv 51
                eL+k   +i+  +vR+ L+ le +gl+ r+
  CCG92643.1 41 ELQK-TFNISRITVRRALQTLESEGLIYRK 69
                5554.4899999*************99665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.8
      HTH_12  16 akeiaeeLkkrgydige 32 
                 +k ia+eL      i e
  CCG92643.1 115 SKDIAKELG-----IEE 126
                 566777764.....334 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   9.1e-05     0.061      72      98 ..      41      67 ..      10      70 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.1e-05
                HHHHHSTSXHHHHHHHHHHHHHTTSEE CS
       RPA_C 72 eiaqklrlsvndvkqavdeLsneGiiY 98
                e+ + +++s  +v++a+++L++eG+iY
  CCG92643.1 41 ELQKTFNISRITVRRALQTLESEGLIY 67
                677888********************* PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0053       3.5      22      53 ..      36      67 ..      31      73 .. 0.88
   2 ?    3.3   0.0      0.14        92      26      46 ..     116     136 ..     111     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0053
                    SB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 22 vvktkdlaerLnvspssVsemlkkLekdGyve 53
                     ++ k+l +  n+s  +V   l+ Le++G++ 
      CCG92643.1 36 LPSEKELQKTFNISRITVRRALQTLESEGLIY 67
                    678999***********************974 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.14
                     HHHHHHHTS-HHHHHHHHHHH CS
  Fe_dep_repress  26 kdlaerLnvspssVsemlkkL 46 
                     kd+a++L+++  sV   l +L
      CCG92643.1 116 KDIAKELGIEERSVCVRLDRL 136
                     89***********99888888 PP

>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0044       2.9      22      52 ..      40      70 ..      38     109 .. 0.87
   2 ?    4.0   0.0     0.085        56      21      42 ..     115     136 ..     113     139 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0044
  B-block_TFIIIC 22 sdLakeskqdprslfyrlksLekkgLIvkqs 52
                    ++L k+++++   +   l++Le+ gLI++++
      CCG92643.1 40 KELQKTFNISRITVRRALQTLESEGLIYRKQ 70
                    6899*************************98 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.085
  B-block_TFIIIC  21 qsdLakeskqdprslfyrlksL 42 
                     ++d+ake++++ rs+  rl+ L
      CCG92643.1 115 SKDIAKELGIEERSVCVRLDRL 136
                     689***************9988 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0       0.3     2e+02      28      48 ..      38      58 ..      38      59 .. 0.88
   2 ?    8.9   0.0    0.0018       1.2      26      49 ..     112     135 ..     106     138 .. 0.79
   3 ?   -1.5   0.0       3.1     2e+03      31      41 ..     196     206 ..     195     214 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.3
                  -HHHHHHHHT--HHHHHHHHH CS
  Sigma70_r4_2 28 sykEIAellgisegtVksrls 48
                  s kE  + ++is  tV+++l+
    CCG92643.1 38 SEKELQKTFNISRITVRRALQ 58
                  678889999********9986 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0018
                   ---HHHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2  26 glsykEIAellgisegtVksrlsR 49 
                   +   k+IA++lgi e++V  rl R
    CCG92643.1 112 ENASKDIAKELGIEERSVCVRLDR 135
                   55579*************888866 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.1
                   HHHHHHT--HH CS
  Sigma70_r4_2  31 EIAellgiseg 41 
                   E A++l+i+e+
    CCG92643.1 196 ELASYLEIKEN 206
                   88999999987 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00017      0.11      72     104 ..      37      69 ..      34      71 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00017
        RP-C  72 psNaqLsralglsestlrrhlaaLveaGliirr 104
                 ps ++L++ +++s+ t+rr l+ L   Gli r+
  CCG92643.1  37 PSEKELQKTFNISRITVRRALQTLESEGLIYRK 69 
                 99****************************998 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       4.2   2.8e+03      25      35 ..      44      54 ..      38      58 .. 0.76
   2 ?   10.8   0.0   0.00041      0.27      16      40 ..     111     135 ..     107     137 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4.2
                HHHTS-HHHHH CS
        GerE 25 eelniSekTVk 35
                +  niS  TV+
  CCG92643.1 44 KTFNISRITVR 54
                56799999997 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00041
                 TTS-HHHHHHHHTS-HHHHHHHHHH CS
        GerE  16 eGksnkeIAeelniSekTVkvhksn 40 
                 + + +k+IA+el+i e++V v + +
  CCG92643.1 111 QENASKDIAKELGIEERSVCVRLDR 135
                 56789**************988766 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0058       3.9      29      58 ..      38      67 ..      33      71 .. 0.90
   2 ?    1.1   0.0      0.54   3.6e+02      22      51 ..     107     136 ..     103     139 .. 0.77
   3 ?   -1.3   0.0         3     2e+03      24      43 ..     188     207 ..     166     214 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0058
                 BHHHHHHHHTS-HHHHHHHHHHHHHCTSEE CS
  TFIIE_alpha 29 teedlakelkidlnelrklLnrLyearlvk 58
                 +e +l+k  +i +  +r++L  L +++l+ 
   CCG92643.1 38 SEKELQKTFNISRITVRRALQTLESEGLIY 67
                 6899************************94 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.54
                  HHCTTSEBHHHHHHHHTS-HHHHHHHHHHH CS
  TFIIE_alpha  22 LlekgevteedlakelkidlnelrklLnrL 51 
                  L    e +  d+akel+i+   +   L rL
   CCG92643.1 107 LFYAQENASKDIAKELGIEERSVCVRLDRL 136
                  5566677889*********98887666666 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3
                  CTTSEBHHHHHHHHTS-HHH CS
  TFIIE_alpha  24 ekgevteedlakelkidlne 43 
                  ++++ ++ +la  l+i+ n+
   CCG92643.1 188 IEAVNADRELASYLEIKENQ 207
                  36666788888888888776 PP

>> Mnd1  Mnd1 HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0039       2.6      18      45 ..      39      66 ..      38      71 .. 0.94
   2 ?    1.2   0.0       0.7   4.7e+02      10      32 ..     107     129 ..     103     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0039
        Mnd1 18 eklapkekgivsqsVkdvlqsLvdDglv 45
                ek+++k  +i++ +V+  lq L ++gl+
  CCG92643.1 39 EKELQKTFNISRITVRRALQTLESEGLI 66
                899************************9 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.7
        Mnd1  10 efytlKeleklapkekgivsqsV 32 
                  fy +    k ++ke gi + sV
  CCG92643.1 107 LFYAQENASKDIAKELGIEERSV 129
                 589999999*********99988 PP

>> HTH_Tnp_IS630  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.84   5.6e+02      22      41 ..      40      59 ..      36      69 .. 0.83
   2 ?    6.9   0.0    0.0091       6.1      71     104 ..     113     146 ..     104     152 .. 0.85
   3 ?    0.1   0.0       1.2   8.1e+02      32      47 ..     166     181 ..     163     249 .. 0.60

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.84
  HTH_Tnp_IS630 22 tkaskvfkvgratvyrWlkr 41
                   ++ +k+f+++r tv r l+ 
     CCG92643.1 40 KELQKTFNISRITVRRALQT 59
                   57899********9998875 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0091
  HTH_Tnp_IS630  71 allkerakkfgvtpasllyalkklkitrkkksyl 104
                    +  k++ak++g++  s++  l +l++   k   +
     CCG92643.1 113 NASKDIAKELGIEERSVCVRLDRLRLGNGKPIAF 146
                    6679********************9988776655 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.2
  HTH_Tnp_IS630  32 ratvyrWlkreelaat 47 
                    r t+y+ l+re   ++
     CCG92643.1 166 RETIYQILQREYKIPV 181
                    7788888888865443 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0     0.003         2      13      61 ..      19      71 ..      11      73 .. 0.76
   2 ?    0.6   0.0      0.75     5e+02      29      51 ..     116     137 ..     114     138 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.003
                   HHHHHHHHHHSS-.....--HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GGG CS
  LexA_DNA_bind 13 dlikasieetgyp.....PsireiaralglkSpsaveehLkaLerKGyierdpg 61
                   ++i+++i++         Ps +e+ + ++++   +v   L++Le  G+i r++g
     CCG92643.1 19 QWIRNEIDSGRLGigaqlPSEKELQKTFNIS-RITVRRALQTLESEGLIYRKQG 71
                   6666666664322222339**********97.99***************99876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.75
                    HHHHHHHTS-.HHHHHHHHHHHH CS
  LexA_DNA_bind  29 reiaralglkSpsaveehLkaLe 51 
                    ++ia++lg++  ++v  +L +L+
     CCG92643.1 116 KDIAKELGIE-ERSVCVRLDRLR 137
                    689******9.999999999996 PP

>> TBPIP  TBPIP/Hop2 winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00091       0.6      25      51 ..      41      69 ..      39      70 .. 0.90
   2 ?   -2.1   0.0       5.6   3.7e+03       4      15 ..     167     178 ..     165     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00091
       TBPIP 25 nlqk..klgKtavqkaLdeLvdegkiieK 51
                 lqk  +++  +v +aL +L++eg+i  K
  CCG92643.1 41 ELQKtfNISRITVRRALQTLESEGLIYRK 69
                5888889*******************987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.6
       TBPIP   4 elvleylqeqnr 15 
                 e +++ lq++++
  CCG92643.1 167 ETIYQILQREYK 178
                 678888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1943.56
//
Query:       CCG92644.1  [L=575]
Description: Sulfite reductase, beta subunit (Hemoprotein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-47  159.4   0.0    8.8e-39  132.6   0.0    2.2  2  NIR_SIR       Nitrite and sulphite reductase 4Fe-4S domain
    1.6e-27   95.1   0.0    5.6e-13   48.5   0.0    2.6  2  NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half 
  ------ inclusion threshold ------
      0.025   13.7   0.0      0.026   13.6   0.0    1.1  1  GcpE          GcpE protein


Domain annotation for each model (and alignments):
>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.0   1.5e-42   8.8e-39       6     155 ..     163     320 ..     160     323 .. 0.95
   2 !   24.6   0.0   2.4e-09   1.4e-05       9     134 ..     427     542 ..     420     552 .. 0.83

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 1.5e-42
                 CCCCCSTCCCTBSS-SS-THHHHHHHH....HHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   6 rnvtlcpgaglceeallDttelakaie....delepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakktsa 100
                 ++ t++ ++++++e++++  ++a++       e ep+yg+ ylPrKfKi ++++p+n+v+ +++D+g+v+++   + +gf++lvGG+ g thg  kt++
  CCG92644.1 163 ISNTFLSKSKAYAEIWINNIPVAYESAqessVEEEPIYGKVYLPRKFKIGFAIPPRNDVDIYSQDLGFVAHVSGTTIEGFTVLVGGSHGMTHGVVKTYP 261
                 67889999***********88888877777799****************************************************************** PP

                 EE....EEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHHHHHHHHHHHHHCC CS
                 xx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR 101 rl....gfvpeeevlevveaivevyrdhgdrknrkkeRlkylverlGvekFrekveeel 155
                 +l     ++p+e+++e++ aiv++ rd+g+r++rk++Rlkylv++ G+++Fr +v ++l
  CCG92644.1 262 KLavplFYIPKEKLTETAIAIVTMHRDFGNREDRKRARLKYLVDEKGIDWFRLEVVKRL 320
                 *****999********************************************9997776 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 2.4e-09
                 CCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS.-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   9 tlcpgaglceeallDttelakaiedelepeygetylPr.KfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakktsarlgfvp 106
                 ++c++  +c  al +++ + ++i+d++e++++e  l +    + +sgcpn c + +  Di++vg   +     ++++vGG++  ++ a +  +r  +v+
  CCG92644.1 427 HACVALPTCGLALAESERVFSKIMDQIEDILKELGLEKeEILFRMSGCPNGCSRPYNADISFVGRAPN----RYALFVGGSTAGDRLA-SLQKR--VVD 518
                 88999999****************************97358999********************8774....589*****98776554.44443..588 PP

                 GGGHHHHHHHHHHHHHHHS-CSSGGG-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR 107 eeevlevveaivevyrdhgdrknrkkeR 134
                  +++ +vv++ +e +     r+ r+ e 
  CCG92644.1 519 INDIPAVVREYLEDFV----RNRRHEES 542
                 8999999999999998....77776665 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   9.3e-17   5.6e-13      10      62 ..      67     119 ..      60     125 .. 0.90
   2 !   43.8   0.0   2.8e-15   1.7e-11       1      68 [.     342     410 ..     342     411 .. 0.93

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 9.3e-17
  NIR_SIR_ferr  10 ymvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleei 62 
                   +mvr + p+G +ta q+  l ++++  g+g++r+TtrQ++qlhgv   +l+  
    CCG92644.1  67 FMVRTKCPGGALTASQYLSLDKLSDSVGNGTLRITTRQGIQLHGVVFGKLHRC 119
                   6********************************************88888765 PP

  == domain 2  score: 43.8 bits;  conditional E-value: 2.8e-15
  NIR_SIR_ferr   1 hkqkdgkgyymvrlrvpnGri.tae...qlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLae 68 
                   h+q dgk  y++++r++nGri +     + + l+ i+e+y+   irlT++ n++l++++e++ e+i ++L e
    CCG92644.1 342 HPQGDGK--YFLGIRIENGRIaDFPslpLRSILRSIIEDYQ-PSIRLTPNANILLCDIDEDKKEKIGKILLE 410
                   8999999..9***********887799888999********.************************999976 PP

>> GcpE  GcpE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.4e-06     0.026     254     333 ..     419     505 ..     173     519 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-06
                 HTTS--SS-EEEE----TTS-CHHHHHHHHHHHHCCCH.......HCG-EEEEESSTCCHHHHCCCSSEEEEEBT.TCEEEEETTEEE CS
        GcpE 254 alrlrksktelisCPsCgRtlfdlqelveeveealehl.......kkglkiavmGCiVNGpgEaadAdlGivggk.gkvslykkkevv 333
                 ++ +r+    +++ P+Cg  l + +++++++ +++e++       k+++   + GC  NG     +Ad+ +vg + ++ +l++++++ 
  CCG92644.1 419 KTAARNLAHACVALPTCGLALAESERVFSKIMDQIEDIlkelgleKEEILFRMSGCP-NGCSRPYNADISFVGRApNRYALFVGGSTA 505
                 56678889999*********9999999888888888775444555588889999997.*****************9*******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 3775.04
//
Query:       CCG92645.1  [L=147]
Description: Nucleotide-binding protein, UspA family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-25   89.3   0.0    3.6e-25   89.1   0.0    1.0  1  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0     2e-29   3.6e-25       1     141 []       1     142 [.       1     142 [. 0.97

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 2e-29
                 S-SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH.HHHHHHCTTCEEEEEEEESSHHHHHHHH CS
         Usp   1 mykrIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada.akaaaeaggvkvevvveegdpaeeilev 98 
                 my +Il+a+D s+  + A++ ++ lak+ g++l ++ v++p +++a s   e +eee  e++   + ++  ++a+ + g++++e+  + g+pa ei+  
  CCG92645.1   1 MYTKILIAYDRSKGGRLAIDEGFCLAKTLGCQLGVIWVVPPIPYYAISLVIEHEEEEKGEKSFFSEIRKDiQEAENRWGIKVREFYKKYGHPALEIVNC 99 
                 9**************************************************99999999999988888888999999********************** PP

                 HHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp  99 aeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 a+e+++dliV+G++g sg  ++ lGS++ +v ++a c+Vl+ r
  CCG92645.1 100 ANENGYDLIVLGHSGYSGALGRALGSTAARVSEEARCSVLIAR 142
                 ****************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1020.90
//
Query:       CCG92646.1  [L=193]
Description: Thiol-disulfide isomerase or thioredoxin [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-20   73.6   0.1    1.9e-20   73.0   0.1    1.3  1  AhpC-TSA       AhpC/TSA family
    3.3e-17   62.6   0.0    3.9e-17   62.3   0.0    1.1  1  Redoxin        Redoxin
    4.2e-05   23.9   0.1    6.5e-05   23.3   0.1    1.2  1  Thioredoxin_2  Thioredoxin-like domain
     0.0016   18.7   0.1     0.0023   18.2   0.1    1.2  1  Thioredoxin_8  Thioredoxin-like
     0.0077   16.2   0.0       0.86    9.6   0.0    2.2  2  Thioredoxin    Thioredoxin


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.1   5.2e-24   1.9e-20       2     123 ..      11     135 ..      10     136 .. 0.91

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 5.2e-24
                 TSB----EEEST.TCEEEECHHHTT.SEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCH........HHHHHHHH-H.SSEEEE-T CS
    AhpC-TSA   2 gdkapdfelkna.dgetvslsdykg.kpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspe........shkkfiekeslnfpllsDe 90 
                 g kap+f+l++a  g+ +slsd++    ++++f+++ +cp+ ++    la+ + +++++g+  ++++++++         ++k+ + + +++fp+l De
  CCG92646.1  11 GTKAPEFSLPDAvSGKIFSLSDFNSfPALLVMFICN-HCPYVKHIQHHLAQTIAKYQKEGLAAVAINSNDVSrypddspeKMKEVALQVGYTFPYLFDE 108
                 89********6636899******8835555566666.******************************9999999999999******************* PP

                 TSHHHHHTT-EETTTTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  91 egkvakaygvlkeekglalratfvidkegkiry 123
                 ++++akay+++      +++  f++dke k++y
  CCG92646.1 109 TQETAKAYKAV------CTPDFFLFDKERKLVY 135
                 ***********......*************998 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   1.1e-20   3.9e-17       3     138 ..      11     144 ..       9     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 1.1e-20
                 TSBB---ECCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHH........HHHHHHHTT-TSEEEE-T CS
     Redoxin   3 gdkaPdftlplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndaf........vkefwgkeglkfpvlsDg 93 
                 g kaP+f+lp+ a  g+ +sls+f+  +++++ + +++cP+ ++    l+++ +++ ++g   va+++++ +         +ke++ + g +fp+l D+
  CCG92646.1  11 GTKAPEFSLPD-AVSGKIFSLSDFNSFPALLVMFICNHCPYVKHIQHHLAQTIAKYQKEGLAAVAINSNDVSRypddspekMKEVALQVGYTFPYLFDE 108
                 89*********.******************************985559****9999**********9988776777777889999999*********** PP

                 TSHHHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCHT CS
     Redoxin  94 saaftkalGlrleedaseglrtpryavidedgkvvylevepepet 138
                 +++ +ka+++          +tp ++++d++ k+vy+++ +e+++
  CCG92646.1 109 TQETAKAYKAV---------CTPDFFLFDKERKLVYRGRYDESRP 144
                 *********88.........*****************99888855 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   1.8e-08   6.5e-05       8     101 ..      39     140 ..      37     145 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.8e-08
  Thioredoxin_2   8 vlvvftdpdCpyCkklkkelkel.ddvtvrvllfplkpsfepkavaiwcakekk.kafkd............ieenvelarkygvrgtPtivfldg 89 
                    +lv+f  ++Cpy k ++  l +   ++++        +++ + + ++++ ++ + +++k+             +e++e a++y+   tP+++++d+
     CCG92646.1  39 LLVMFICNHCPYVKHIQHHLAQTiAKYQKE-----GLAAVAINSNDVSRYPDDSpEKMKEvalqvgytfpylFDETQETAKAYKAVCTPDFFLFDK 129
                    699**************9888885666666.....344445555555555544445666688899******************************* PP

  Thioredoxin_2  90 keivarlpGyvp 101
                    + + ++++G ++
     CCG92646.1 130 E-RKLVYRGRYD 140
                    *.6668888775 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   6.4e-07    0.0023       4      94 ..      39     132 ..      37     133 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.4e-07
                    EEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-.......SS-HHHHHHHGGGS-TTSEE.EE-TT-HHHHTT-S--TT-SEEEEE-TT CS
  Thioredoxin_8   4 vlLyfgaswcppckaftpklkelyeklkkkkkveivyvsl.......dkkeeefekylkknkkpwlsvpfddkkrnklkkkynvkaiPtlvvldkn 92 
                    +l++f  ++cp  k++  +l +   k++ k ++  v++++       d + e+++++  +     + +p+  +++++ +k y+  + P +++ dk+
     CCG92646.1  39 LLVMFICNHCPYVKHIQHHLAQTIAKYQ-KEGLAAVAINSndvsrypDDSPEKMKEVALQV---GYTFPYLFDETQETAKAYKAVCTPDFFLFDKE 130
                    6899***********************9.7***************999999****999999...88889998999*******************98 PP

                    -B CS
  Thioredoxin_8  93 ge 94 
                    ++
     CCG92646.1 131 RK 132
                    76 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00024      0.86      20      60 ..      38      79 ..      28      92 .. 0.80
   2 !    4.4   0.0    0.0099        35      59      93 ..     107     144 ..     105     151 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00024
                 EEEEEEE-TTSHHHHCHHHHHHHHHHHCTT.TSEEEEEETTT CS
  Thioredoxin 20 lvlveFyApwCghCkalaPeleklaeelkd.kvklakvdvde 60
                  +lv F  + C+  k+++ +l+++  ++++  +  + ++ ++
   CCG92646.1 38 ALLVMFICNHCPYVKHIQHHLAQTIAKYQKeGLAAVAINSND 79
                 689**********************99998755555555444 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0099
                  TTSHHHHHHTT-SSSSEEEEEETTE...EEEEEESS-H CS
  Thioredoxin  59 denedlakkyevegiPtlklfkngk...evkkyegare 93 
                  de +++ak y+  + P + lf +++   +  +y+++r+
   CCG92646.1 107 DETQETAKAYKAVCTPDFFLFDKERklvYRGRYDESRP 144
                  7999*****************99985555555665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1435.19
//
Query:       CCG92647.1  [L=103]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       969  (0.0540465); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 761.15
//
Query:       CCG92648.1  [L=199]
Description: recombination protein, gap repair [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-17   63.5   0.0    3.6e-17   62.6   0.0    1.5  1  Toprim_4      Toprim domain
    1.4e-13   50.2   0.9    1.4e-13   50.2   0.9    1.7  2  RecR          RecR protein
    0.00095   19.3   0.1     0.0013   18.9   0.1    1.2  1  PHF5          PHF5-like protein
      0.006   16.1   2.0      0.012   15.1   2.0    1.5  1  zn-ribbon_14  Zinc-ribbon
     0.0082   16.4   0.1      0.023   14.9   0.0    1.7  2  Toprim        Toprim domain
  ------ inclusion threshold ------
       0.11   13.2   0.4       0.36   11.5   0.0    2.0  2  HHH_5         Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.2e-20   3.6e-17       4      88 ..      84     171 ..      82     172 .. 0.94

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 1.2e-20
    Toprim_4   4 iiVEgyaDvlaleka.giknvvavlggalspldgirpeklktenlve..aekkvkevilaldgDaeGeataerlaellleegvkvtrl 88 
                 ++V  + Dvl++e++  +++v++vlg  +spl+g  pe+l++ +l++   ++k +evila+  Dae eata+++++ l+++ +kv+ l
  CCG92648.1  84 CVVIHPVDVLKIERTgAFRGVYHVLGKKISPLEGHTPEDLPIAHLIQriDKEKPREVILAFGTDAEAEATALFVSQILKKRAIKVSSL 171
                 899999*******************************************66666**********************888999999977 PP

>> RecR  RecR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.96   2.9e+03       3      12 ..       9      18 ..       8      18 .. 0.79
   2 !   50.2   0.9   4.6e-17   1.4e-13       3      40 .]      42      79 ..      41      79 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.96
                HHHHHHHHHH CS
        RecR  3 eeLaeaLqea 12
                ++L+eaL+e+
  CCG92648.1  9 RNLIEALKEL 18
                7899999875 PP

  == domain 2  score: 50.2 bits;  conditional E-value: 4.6e-17
                HHHHHHHHHHHHH-EE-TTT--EESSSS-CCCCSTTSE CS
        RecR  3 eeLaeaLqeakekvrhCsrCgnlteedlCaICsdprRD 40
                ++L+ +L+e+ +k++ CsrCg ++ee lC+IC+dp+RD
  CCG92648.1 42 QRLIASLKELETKITLCSRCGFYSEEPLCQICQDPSRD 79
                6899*********************************9 PP

>> PHF5  PHF5-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   4.5e-07    0.0013      33      75 ..      45      87 ..      27     105 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.5e-07
        PHF5 33 cdslvkpatkvricdecsfgkleekciicgskgvsdayyclec 75
                  sl + +tk+++c  c f ++e  c ic+  + +  yyc+  
  CCG92648.1 45 IASLKELETKITLCSRCGFYSEEPLCQICQDPSRDLLYYCVVI 87
                5566677899******************************864 PP

>> zn-ribbon_14  Zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.0   3.9e-06     0.012       3      18 ..      58      73 ..      56      74 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.9e-06
  zn-ribbon_14  3 CerCGylSSqkiCkAC 18
                  C+rCG+ S  ++C+ C
    CCG92648.1 58 CSRCGFYSEEPLCQIC 73
                  **************98 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3   3.9e+03      45      59 ..      37      51 ..       7      57 .. 0.58
   2 !   14.9   0.0   7.6e-06     0.023       3      93 ..      84     163 ..      82     171 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
                ECTTTHHHHHHHHHH CS
      Toprim 45 eiedkkkvlkalkel 59
                ++ +k+  +++lkel
  CCG92648.1 37 NKGTKQRLIASLKEL 51
                445555555555555 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 7.6e-06
                 EEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHSTTEEEEEECTTTHHHHHHHHHHH.HHHSEEEEECSSSHHHHHHHHHHHHHHTHHHTT CS
      Toprim   3 vivEgpsdaktiakalgsgfqavtaslGhildletefkpvyeeiedkkkvlkalkela.kradeiilatDpDreGeaiawellevlkellen 93 
                 ++v  p d+ +i+++ g  f  v+++lG+ ++  +         +++  +   ++++  ++  e+ila+  D e ea+a+ + + lk    +
  CCG92648.1  84 CVVIHPVDVLKIERT-G-AFRGVYHVLGKKISPLE------GHTPEDLPIAHLIQRIDkEKPREVILAFGTDAEAEATALFVSQILK----K 163
                 566667777788887.3.55555555554444444......2333333344445555446677********************7666....3 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.36      34      53 ..      12      31 ..       7      33 .. 0.90
   2 ?   -3.0   0.1         4   1.2e+04      49      57 .]      42      50 ..      40      50 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                HHHHHTSTTS-HHHHHHHHH CS
       HHH_5 34 veeLakipGiGkktAeriil 53
                +e+L ++p iG++ Aeriil
  CCG92648.1 12 IEALKELPAIGPRSAERIIL 31
                689****************8 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4
                HHHHHHHHH CS
       HHH_5 49 eriilelkd 57
                +r+i +lk+
  CCG92648.1 42 QRLIASLKE 50
                899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1516.98
//
Query:       CCG92649.1  [L=102]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-29  100.5   5.7    5.1e-29  100.4   5.7    1.0  1  YbaB_DNA_bd  YbaB/EbfC DNA-binding family
  ------ inclusion threshold ------
      0.071   13.8   1.6       0.13   13.0   1.6    1.4  1  DUF3656      Collagenase


Domain annotation for each model (and alignments):
>> YbaB_DNA_bd  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   5.7   5.7e-33   5.1e-29       1      90 [.       7      96 ..       7      97 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 5.7e-33
                 HHHHHHHHHHHHHHHHHHTTSEEEEEETTTTEEEEEETT--EEEEEE-GGGG.GS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--X CS
  YbaB_DNA_bd  1 mkqaqkmqkkmeeaqeelaekevegssggglVkVtvngkgevksikIdpslldpedkemLedlivaAvndAlkkaeeeaeeemskltggl 90
                 +kqaqk+q++++++qe+la+ ++eg+sgg  Vk+tvng+g +++i Idpsll+++d em+edliv Av++A++ka+e+++++++kl ggl
   CCG92649.1  7 LKQAQKLQEEAKKIQEQLASLTFEGESGGSKVKATVNGEGVLVKIAIDPSLLETKDGEMIEDLIVVAVQAAQEKAKEASQAQFQKLGGGL 96
                 59************************************************************************************9987 PP

>> DUF3656  Collagenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.6   1.4e-05      0.13      16      69 ..       9      94 ..       1      95 [. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
     DUF3656 16 slek..seerkipvd...lelaakeg.eplkltvtde............................leeAkkrplteenirkqLsklGg 69
                +++k  +e +ki+ +   l++++++g +++k tv+ e                            +++A++++  +e  ++q++klGg
  CCG92649.1  9 QAQKlqEEAKKIQEQlasLTFEGESGgSKVKATVNGEgvlvkiaidpslletkdgemiedlivvaVQAAQEKA--KEASQAQFQKLGG 94
                33334323333333332366655544588888887557788888888888899999999****9999999999..9***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1960  (0.10932); expected 358.6 (0.02)
Passed bias filter:                     1250  (0.0697194); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 729.20
//
Query:       CCG92650.1  [L=592]
Description: DNA polymerase III, gamma/tau subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-38  132.1   0.0    2.4e-38  131.5   0.0    1.3  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
    5.3e-15   56.0   0.0    1.4e-14   54.6   0.0    1.8  1  AAA              ATPase family associated with various cellul
    1.2e-10   41.4   1.6    2.5e-10   40.4   1.6    1.5  1  DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau do
    9.3e-08   32.0   0.0    5.1e-06   26.3   0.0    2.3  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    9.2e-07   29.2   0.0      6e-06   26.6   0.0    2.3  1  AAA_22           AAA domain
    2.2e-06   27.7   0.3      3e-05   24.0   0.0    2.7  2  AAA_14           AAA domain
    4.4e-06   26.7   0.1      0.089   12.8   0.0    2.5  2  AAA_5            AAA domain (dynein-related subfamily)
    1.3e-05   25.1   0.0    7.3e-05   22.6   0.0    2.1  2  AAA_24           AAA domain
      2e-05   25.1   2.1    0.00024   21.6   2.1    2.9  1  AAA_16           AAA ATPase domain
    0.00018   21.3   0.0    0.00055   19.8   0.0    1.8  1  DNA_pol3_delta   DNA polymerase III, delta subunit
    0.00021   21.9   0.0    0.00067   20.2   0.0    1.9  1  AAA_18           AAA domain
    0.00079   18.7   0.0       0.12   11.5   0.0    2.4  2  TIP49            TIP49 P-loop domain
    0.00081   19.2   0.0     0.0068   16.1   0.0    2.2  1  AAA_30           AAA domain
    0.00099   19.5   0.0       0.57   10.5   0.0    3.0  3  AAA_19           AAA domain
     0.0013   18.1   0.0     0.0051   16.2   0.0    1.9  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.002   18.2   0.0        2.9    7.8   0.0    2.8  2  ResIII           Type III restriction enzyme, res subunit
     0.0024   17.8   0.0      0.016   15.1   0.0    2.3  2  Rad17            Rad17 P-loop domain
     0.0061   15.8   0.0      0.012   14.8   0.0    1.4  1  PIF1             PIF1-like helicase
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.038   14.0   0.0    1.8  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.018   15.4   0.1       0.26   11.7   0.0    2.7  2  RNA_helicase     RNA helicase
      0.032   13.9   0.0       0.48   10.1   0.0    2.2  2  Sigma54_activat  Sigma-54 interaction domain
      0.032   14.5   0.2       0.17   12.2   0.2    2.2  1  Utp12            Dip2/Utp12 Family
      0.035   13.2   0.0      0.063   12.3   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
      0.046   13.8   0.0         15    5.7   0.0    2.5  2  Sigma54_activ_2  Sigma-54 interaction domain
      0.048   14.2   0.0       0.17   12.4   0.0    2.0  1  ABC_tran         ABC transporter
       0.06   13.6   0.1       0.12   12.6   0.1    1.5  1  AAA_28           AAA domain
      0.065   13.0   0.0       0.13   11.9   0.0    1.5  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.072   13.3   0.0       0.17   12.1   0.0    1.6  1  AAA_33           AAA domain
      0.084   12.4   0.0       0.32   10.5   0.0    1.9  2  AAA_7            P-loop containing dynein motor region
      0.087   12.6   0.0        4.6    6.9   0.0    2.4  2  IstB_IS21        IstB-like ATP binding protein
      0.094   12.8   0.1       0.24   11.5   0.1    1.7  1  SKI              Shikimate kinase


Domain annotation for each model (and alignments):
>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.5   0.0   4.2e-41   2.4e-38       1     162 [.      19     177 ..      19     178 .. 0.97

  Alignments for each domain:
  == domain 1  score: 131.5 bits;  conditional E-value: 4.2e-41
  DNA_pol3_delta2   1 gqeealkilskalksgrlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqireliee 94 
                      gq+++++ l++a++ +r+ahayLf+G++g+gk +la  lak+l+c+++ + + + +   c  i+ g   D i i+  ++     +dq+r+l e 
       CCG92650.1  19 GQDHVVRTLKNAIRLQRVAHAYLFSGPRGTGKTTLARILAKSLNCTDGPNADFDPNDPICLDIDAGRSFDCIEIDGASN---NGVDQVRDLREA 109
                      68899********************************************999999******************987766...69********** PP

  DNA_pol3_delta2  95 lsrkpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfspl 162
                      ++  p++s++ki+ii+++ ++t++A NalLk+lEEP++++ fi+ t++++k+ +t+ SRcq ++f+++
       CCG92650.1 110 AKTLPVQSRYKIYIIDEVHMLTQAAFNALLKILEEPPQHVKFIFATTEPHKIPTTVISRCQRFHFKRI 177
                      *****************************************************************975 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   2.5e-17   1.4e-14       2     127 ..      41     172 ..      40     177 .. 0.78

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 2.5e-17
                 EEESSTTSSHHHHHHHHHHHHTHE........................EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS...TSEEEEEETGGGHHHH CS
         AAA   2 llyGppGtGKTllakavakelgve........................fleisgsellskyvgesekkirelfkeakeka...kpsilfiDEidalaks 73 
                 l++Gp GtGKT+la+ +ak+l+ +                        ++ei+g++        + +++r+l ++ak+     + +i +iDE++ l+++
  CCG92650.1  41 LFSGPRGTGKTTLARILAKSLNCTdgpnadfdpndpicldidagrsfdCIEIDGASNN------GVDQVRDLREAAKTLPvqsRYKIYIIDEVHMLTQA 133
                 89******************96444555666666777444444444435666666655......777777777777776677455***********999 PP

                 HTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEE CS
         AAA  74 rsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrk 127
                              n+Ll+ l++  +   +v +i at++p+k++  ++ +R++r 
  CCG92650.1 134 A-----------FNALLKILEEPPQ---HVKFIFATTEPHKIPTTVI-SRCQRF 172
                 9...........***********99...5******************.899875 PP

>> DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   1.6   4.3e-13   2.5e-10       2     139 ..     232     368 ..     231     371 .. 0.92

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 4.3e-13
  DNA_pol3_gamma3   2 saaqVrdmLGladrarlldlleallegdaaaalaelreqyaaGadpvvvlrdLlellhqltllkvlpeaaedlslpeeererlkelaeklsleq 95 
                      ++a+V++m+G++  + l  +l ++++g++ +al+++  ++++G dp  + r++ +llh+++l+k++ + + + +l++ee   ++e +++lsl  
       CCG92650.1 232 DLASVQEMFGIVGLEPLCGILRDIASGQSLEALKKVHMLLESGKDPILLAREFRNLLHNVALFKASIT-TLKGQLDAEELDLIREASKHLSLPL 324
                      6899*************************************************************985.77778*******************9 PP

  DNA_pol3_gamma3  96 LqrlWqlllkgieevknapdpraaaEmvLlRlaaaaslptpeea 139
                      +  l + + +  + ++ a  + + +E+++l l  +++  + ee+
       CCG92650.1 325 VIDLLEAMDSWENKLRYALHKEVLFEIAILELSQLKEKVELEEL 368
                      99999999999999999999999999999999988777766665 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   8.8e-09   5.1e-06       2      59 ..      10      63 ..       9      69 .. 0.85
   2 ?    3.1   0.0      0.12        69      79     109 ..     113     143 ..      90     153 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 8.8e-09
      RuvB_N  2 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgv 59
                rPk ++e +gq++v  +lk +i+  +         l++Gp G Gkttla+i+ak l+ 
  CCG92650.1 10 RPKVFSEVVGQDHVVRTLKNAIRLQR----VAHAYLFSGPRGTGKTTLARILAKSLNC 63
                9***************9997775433....3445799*****************9875 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.12
      RuvB_N  79 ltnleekdvlfideihrlsraveevlysame 109
                 l   ++ ++  ide+h l++a+ + l + +e
  CCG92650.1 113 LPVQSRYKIYIIDEVHMLTQAAFNALLKILE 143
                 33345678999********999888888777 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0     1e-08     6e-06       8     130 ..      40     156 ..      34     159 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1e-08
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee........erpevvfvtlpsstsskdllrellralglelkaerlsseell.ealeqalraraviellii 97 
                  +  G+ GtGKTtl+r l+++l+      +        ++p ++ +++  s      + e+  a +++ +    + ++l+ +a +  +++r++  + ii
  CCG92650.1  40 YLFSGPRGTGKTTLARILAKSLNCT----DgpnadfdpNDPICLDIDAGRSF----DCIEIDGASNNGVD----QVRDLReAAKTLPVQSRYK--IYII 124
                 6778*****************9543....23445776555555555555555....46677776664333....6999997778888888888..**** PP

      AAA_22  98 DEaqhlrseealeeLrsllnlsrkgvqliLvGt 130
                 DE++ l +++a++ L ++l+   ++v++i++ t
  CCG92650.1 125 DEVHML-TQAAFNALLKILEEPPQHVKFIFATT 156
                 ******.********888887889999998765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   5.3e-08     3e-05       4      98 ..      39     154 ..      37     168 .. 0.74
   2 ?    0.1   0.1       1.3   7.6e+02      47      90 ..     305     346 ..     274     374 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 5.3e-08
      AAA_14   4 ilvitGaRrvGKTtllkqlikell........vkkesilyinldderd.....kkladpe.......kllelileklke....ekktylflDEiqevpe 78 
                 +++ +G+R +GKTtl++ l+k+l          ++++ + +++d  r            +       +  + ++e +k+    ++ ++ ++DE++++++
  CCG92650.1  39 AYLFSGPRGTGKTTLARILAKSLNctdgpnadFDPNDPICLDIDAGRSfdcieI-----DgasnngvDQVRDLREAAKTlpvqSRYKIYIIDEVHMLTQ 132
                 67889**************99999******999999999999999888555441.....22223334333333333222445568889********976 PP

      AAA_14  79 .wekalkslvdeg.knldvivt 98 
                  +++al ++++e  +++++i++
  CCG92650.1 133 aAFNALLKILEEPpQHVKFIFA 154
                 3688999998888677888765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.3
      AAA_14  47 adpekllelileklkeekktylflDEiqevpewekalkslvdeg 90 
                  d e  l+li+e  k+     l++D    +++we+ l++ + ++
  CCG92650.1 305 LDAE-ELDLIREASKH-LSLPLVIDLLEAMDSWENKLRYALHKE 346
                 3332.34556664322.455699999999******999998876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00047      0.27       3      25 ..      41      63 ..      39      66 .. 0.89
   2 !   12.8   0.0   0.00015     0.089      61      93 ..     108     146 ..      92     158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00047
                EEE--SSSSHHHHHHHGGGGBS- CS
       AAA_5  3 lLvGppGtgKselaerlaaalnr 25
                l  Gp GtgK++la+ la+ ln+
  CCG92650.1 41 LFSGPRGTGKTTLARILAKSLNC 63
                678***************99975 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00015
                 ----......G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5  61 raar......egeilvlDEveraesevlnsLlslleerr 93 
                 +aa+      + +i+++DEv+++ ++++n+Ll++lee  
  CCG92650.1 108 EAAKtlpvqsRYKIYIIDEVHMLTQAAFNALLKILEEPP 146
                 4555666666779***********************965 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.3e-07   7.3e-05       7      84 ..      42     137 ..      37     150 .. 0.86
   2 ?   -0.8   0.0       1.9   1.1e+03      91     116 ..     530     554 ..     520     558 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.3e-07
      AAA_24   7 iyGpsgiGKTtlakel...............gpkplfidtekGlksldadkfpdie.....swedfldevvelaaeladyktlviDtideleelclae 84 
                   Gp g+GKTtla+ l               +++p+++d+++G  s d ++++ ++     ++ d+++++++l+ + + yk+++iD +  l + +++ 
  CCG92650.1  42 FSGPRGTGKTTLARILakslnctdgpnadfdPNDPICLDIDAGR-SFDCIEIDGASnngvdQVRDLREAAKTLPVQSR-YKIYIIDEVHMLTQAAFNA 137
                 569***************************************87.777777776668878899999999999966655.*********9999887765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.9
      AAA_24  91 kaeskedkgdgkGygelaeefrrllk 116
                 k +  ++k++ kGy+++++e ++  +
  CCG92650.1 530 K-SASSSKNKNKGYANYTNEEKNQTD 554
                 3.334678999*****9999877666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   2.1   4.1e-07   0.00024       2      49 ..      17      62 ..      16     347 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 4.1e-07
      AAA_16  2 lvGReeeleqLlsale..rvrsgrpelvllsGesGvGKsslvrellrale 49
                +vG ++ +++L++a++  rv     ++ l+sG++G+GK++l+r l+++l+
  CCG92650.1 17 VVGQDHVVRTLKNAIRlqRV----AHAYLFSGPRGTGKTTLARILAKSLN 62
                7999***********94222....389*******************9886 PP

>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   9.5e-07   0.00055      42     172 ..     103     223 ..      86     225 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 9.5e-07
                     HH.HTTTSTTTTSSSSEEEEEEE--.....TT-S-TTHHHHHHHHTTT--SSEEEEEEES.S--HHHHHHHHHTTTEEEEEE----TTTHHHHHH CS
  DNA_pol3_delta  42 iddvleecetlpffsdkrivvlknpklltkesklnekllkeLeeylsnlpedtlLiliapkklderkklvklLkkkatvveaktlkeeelkkwiq 136
                       d+ e+++tlp  s  +i +++  ++      l++   ++L ++l+++p+++ +i+ ++    e  k+  +  ++   +++k+   + + + +q
      CCG92650.1 103 VRDLREAAKTLPVQSRYKIYIIDEVHM------LTQAAFNALLKILEEPPQHVKFIFATT----EPHKIPTTVISRCQRFHFKRIPRKLIADHLQ 187
                     4568899******************66......6778899********************....333444444445556**************** PP

                     HHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHH CS
  DNA_pol3_delta 137 kraqelglkiekealelLlelvennlsaikqelekL 172
                     k+++ ++++ +++ale +++ +e+ l+ ++ +l+ L
      CCG92650.1 188 KICSYEQIDADRKALEIIADISEGALRDAEVALDQL 223
                     ***************************999999887 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.2e-06   0.00067       3      62 ..      42     105 ..      41     161 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.2e-06
      AAA_18   3 ltGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpe...aldeskrldedkldklld 62 
                  +G+ G+GKttla+ L+k+l++      d  +++ ++l+ d+    +  e + +  + +d++ d
  CCG92650.1  42 FSGPRGTGKTTLARILAKSLNCtDGPNADFDPNDPICLDIDAGrsfDCIEIDGASNNGVDQVRD 105
                 68******************99977778888888888888888444333444444444444433 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00022      0.12      39      75 ..      27      62 ..      10      73 .. 0.82
   2 ?    4.6   0.0     0.027        16     282     308 ..     122     148 ..     102     166 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00022
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 39 ivelikekklaGravLlaGpsgtGktalaiaiskelg 75
                + + i+ +++a +a L++Gp+gtGkt la  ++k+l+
  CCG92650.1 27 LKNAIRLQRVA-HAYLFSGPRGTGKTTLARILAKSLN 62
                56778889998.9*********************997 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.027
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 282 lfiDevhmlDiecfsylnraleselaP 308
                   iDevhml   +f  l + le++   
  CCG92650.1 122 YIIDEVHMLTQAAFNALLKILEEPPQH 148
                 469*******************97554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-05    0.0068      21     114 ..      40     144 ..      28     154 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-05
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk..........grarlepg.tllivDEagmvdtkqlaal 108
                  +  Gp GtGKtt+ + l++ ++   g+ + + p+     ++ ++  +++  i+   ++            ++  ++++ +++i+DE+ m+ ++ ++al
  CCG92650.1  40 YLFSGPRGTGKTTLARILAKSLNCTDGPNADFDPNDPICLDIDAGRSFDCIEIDGASNNGVdqvrdlreaaKTLPVQSRyKIYIIDEVHMLTQAAFNAL 138
                 5779*******************998788888888888888887777766666666533336666677777556788888******************* PP

      AAA_30 109 lkaaek 114
                 lk++e+
  CCG92650.1 139 LKILEE 144
                 **9987 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.049        28       4      35 ..      30      62 ..      28      75 .. 0.75
   2 !   10.5   0.0   0.00098      0.57      88     131 ..     103     148 ..      86     153 .. 0.80
   3 ?   -1.3   0.0       4.2   2.4e+03      89     117 ..     541     568 ..     463     581 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.049
      AAA_19  4 ave.alkekvllvtaGpGtGKTrvlkhivallv 35
                a++ +  ++  l  ++ GtGKT++ +   + l+
  CCG92650.1 30 AIRlQRVAHAYLFSGPRGTGKTTLARILAKSLN 62
                66656667777888888*****99877776665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00098
      AAA_19  88 lelleeaeeekklqeee.llivDEfqdvd.elqyrLlkallgekkk 131
                 +  l+ea+++ ++q+++ + i+DE+ +++    ++Llk l ++ ++
  CCG92650.1 103 VRDLREAAKTLPVQSRYkIYIIDEVHMLTqAAFNALLKILEEPPQH 148
                 4456688899999999999**********89999999998865554 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 4.2
      AAA_19  89 elleeaeeekklqeee.llivDEfqdvd.el 117
                 ++ ++   +++ ++++  + +DE++  + +l
  CCG92650.1 541 GYANY---TNEEKNQTdNFSIDESSLKNdPL 568
                 22223...22333333489999988655455 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.8e-06    0.0051       2      44 ..      14      59 ..      13      67 .. 0.85
   2 ?   -1.8   0.0       2.9   1.7e+03      42      85 ..     248     291 ..     246     304 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.8e-06
  Mg_chelatase  2 lkdvkGqeeakraleiaaa...GgHnlllvGppGsGKtmlakrlps 44
                  +++v+Gq++  r+l+ a+      H  l+ Gp G+GKt la+ l++
    CCG92650.1 14 FSEVVGQDHVVRTLKNAIRlqrVAHAYLFSGPRGTGKTTLARILAK 59
                  689*********999998522257*****************99876 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.9
  Mg_chelatase  42 lpsllpplseeealevakiasvagkkeeekllkrrpfraphhsa 85 
                   l ++l ++ + ++le+ k   +  ++ ++ +l +r+fr+  h++
    CCG92650.1 248 LCGILRDIASGQSLEALKKVHMLLESGKDPILLAREFRNLLHNV 291
                   67899999999999987766666668999999999999988866 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0086         5       8      48 ..      20      61 ..      14      66 .. 0.76
   2 !    7.8   0.0    0.0051       2.9     122     159 ..     108     144 ..      90     157 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0086
                HHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH CS
      ResIII  8 Qeeaienlleklks.krdkrglikmaTGtGKTlvaaklierl 48
                Q ++++ l++++   +  + +l+  + GtGKT +a  l+++l
  CCG92650.1 20 QDHVVRTLKNAIRLqRVAHAYLFSGPRGTGKTTLARILAKSL 61
                7777777777776524455888**********9997776665 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0051
                 .....HHHTTT-SEEEEETGGGTTS.TTTHHHHHT--- CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgakkswreilekfke 159
                 e +++   ++r++++iiDE+H l++ ++++++l+ ++e
  CCG92650.1 108 EAAKTLPVQSRYKIYIIDEVHMLTQ-AAFNALLKILEE 144
                 6667777889999************.888888776654 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.8e-05     0.016      10      70 ..       6      62 ..       2      67 .. 0.84
   2 ?   -1.3   0.0       3.1   1.8e+03      17      41 ..     287     311 ..     284     322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.8e-05
       Rad17 10 fekykPekaeelavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLskelg 70
                  ky+P+   e+    + ++ +k++++ + + ++     L sGP G gk+t  ++L+k l 
  CCG92650.1  6 SRKYRPKVFSEVVGQDHVVRTLKNAIRLQRVAHA----YLFSGPRGTGKTTLARILAKSLN 62
                5699999999998888888888888877777666....89******************875 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.1
       Rad17  17 kaeelavhkkkieevkewlkadvLe 41 
                  ++++a+ k  i  +k  l+a+ L+
  CCG92650.1 287 LLHNVALFKASITTLKGQLDAEELD 311
                 6899*****************9886 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.1e-05     0.012       6     127 ..      20     143 ..      18     152 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.1e-05
                 HHHHHHHH.......HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS-HHHH.HHHTSCCCHHHHHC CS
        PIF1   6 Qkkvfdaiieavln.ekgklfFvtGsgGtgKtflwkallkklrsegkivlavAssGvAalllegGrtahsrfkiplekdeestc.kikrgsklaellkk 102
                 Q +v+++  +a+   + ++   ++G  GtgKt l + l k+l+ ++   +         l ++ Gr        + +++  +++ ++++  k+    ++
  CCG92650.1  20 QDHVVRTLKNAIRLqRVAHAYLFSGPRGTGKTTLARILAKSLNCTDGPNADFDPNDPICLDIDAGRSFDCIEIDGASNNGVDQVrDLREAAKTLPVQSR 118
                 67777777777764266788889**********************9999999999999*******9776544444455555666677777777778899 PP

                 -SEEEEECGGGSBHHHHHHHHHHHH CS
        PIF1 103 tsliiwDEapmverecfealdrtlr 127
                  ++ i+DE+ m+ + +f+al ++l 
  CCG92650.1 119 YKIYIIDEVHMLTQAAFNALLKILE 143
                 99*****************988876 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.6e-05     0.038      12      45 ..      31      63 ..      20      69 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.6e-05
                HHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE 12 kklakalgdvilLeGdLGaGKTtlvrglakalgv 45
                 +l++ ++++ l++G+ G+GKTtl+r lak+l++
  CCG92650.1 31 IRLQR-VAHAYLFSGPRGTGKTTLARILAKSLNC 63
                33333.356799******************9986 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00045      0.26       2      23 ..      41      62 ..      40      74 .. 0.89
   2 ?   -0.4   0.1       2.7   1.5e+03      36      76 ..     534     575 ..     522     590 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00045
  RNA_helicase  2 wlyGpsgeGKStlakeLakall 23
                  +++Gp+g+GK+tla+ Lak+l 
    CCG92650.1 41 LFSGPRGTGKTTLARILAKSLN 62
                  589***************9987 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 2.7
  RNA_helicase  36 srnpeddfwdgYtgqevvvidDfgqvkdee.npsdlaelirl 76 
                   s +++++ + +Yt++e +  d f+ ++++  n+  ++e ++l
    CCG92650.1 534 SSKNKNKGYANYTNEEKNQTDNFSIDESSLkNDPLIKEALEL 575
                   455566667789999999999999999887666677776666 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00082      0.48       8      51 ..      23      66 ..      17      75 .. 0.75
   2 ?    1.3   0.0      0.44   2.5e+02      98     119 ..     123     144 ..     116     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00082
                     HHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS CS
  Sigma54_activat  8 lkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkek 51
                     + ++l+++ ++ +     l  G  GtGK++lar + ++ + +++
       CCG92650.1 23 VVRTLKNAIRLQRVAHAYLFSGPRGTGKTTLARILAKSLNCTDG 66
                     445566666777788999***************99887666555 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.44
                      EEETGGGS-HHHHHHHHHHHHH CS
  Sigma54_activat  98 fLDeigelplelQekLlrvlqe 119
                       +De++ l+ ++ + Ll++l+e
       CCG92650.1 123 IIDEVHMLTQAAFNALLKILEE 144
                      68******************98 PP

>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   0.00029      0.17      16      80 ..     311     371 ..     301     381 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00029
                 TTHHHHHHCS-CTCHHHHHHHHHHHH.HTTTTHHHHHHHHHHHHHHHHHHHHHSH.HHHHHHHHH CS
       Utp12  16 sdirltvlrLpssyvlkLLeflaerlaeksphlelllrwlkallrvHgsylvaspsdlvpaLrsl 80 
                 ++ir++ + L++++v +LLe++ ++   ++ +  l+ ++l+++     s+l+++ + l ++L ++
  CCG92650.1 311 DLIREASKHLSLPLVIDLLEAMDSWE--NKLRYALHKEVLFEIAILELSQLKEKVE-L-EELLAM 371
                 78**********************65..7889*******************98875.7.555554 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011     0.063     113     155 ..      22      63 ..       7      67 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
       T2SSE 113 alkekiaevlrkavrerglilvsGgTgsGKttllyallkeink 155
                 ++  ++++++r   r     l+sG+ g+GKttl+ +l k +n 
  CCG92650.1  22 HVVRTLKNAIRLQ-RVAHAYLFSGPRGTGKTTLARILAKSLNC 63 
                 4445555566655.566789**************999988875 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.027        15       5      44 ..      22      60 ..      18      76 .. 0.75
   2 ?    5.5   0.0      0.03        17      67     109 ..     116     157 ..      89     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.027
                     HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--T CS
  Sigma54_activ_2  5 aaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhkn 44
                      ++  lk+ +   + +++ +f  G+ G+gk++ Ar+L+k+
       CCG92650.1 22 HVVRTLKNAIRLQRVAHAYLF-SGPRGTGKTTLARILAKS 60
                     566666666666555555554.8**************975 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.03
                      HTTTSEEEEEE-TT--HHHHHHHHHHHHHHTTTT-EEEEEEEE CS
  Sigma54_activ_2  67 qakggtLylkdiadlskaeqkeLlellakaeksslrlVstssk 109
                      q++  + ++ +++ l +a+   Ll++l++  ++++++++++ +
       CCG92650.1 116 QSRYKIYIIDEVHMLTQAAFNALLKILEEP-PQHVKFIFATTE 157
                      56777899*********************9.********9976 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00029      0.17      14      40 ..      40      66 ..      35     128 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00029
                EEEEESTTSSHHHHHHHHTTSS--SEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpteG 40
                + + G+ G+GK+tL+++la+ l+ t G
  CCG92650.1 40 YLFSGPRGTGKTTLARILAKSLNCTDG 66
                5678****************9999888 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00022      0.12       3      21 ..      41      59 ..      39      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00022
      AAA_28  3 vitGgestGKTtlleaLaa 21
                 ++G+ +tGKTtl++ La+
  CCG92650.1 41 LFSGPRGTGKTTLARILAK 59
                699**************96 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00023      0.13       8      85 ..      47     141 ..      41     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00023
  Viral_helicase1   8 GcGKStlirkllrts.......liltvnrptaelltegk..........pklpnlsvrtvdsflmalvkstkgkililDEylllhaGyilllaa 84 
                      G GK+tl r l+++         ++ +n p + ++ +g+          ++++ ++vr ++++ ++l  + ++ki i+DE  +l+++ +++l++
       CCG92650.1  47 GTGKTTLARILAKSLnctdgpnADFDPNDPICLDIDAGRsfdcieidgaSNNGVDQVRDLREAAKTLPVQSRYKIYIIDEVHMLTQAAFNALLK 140
                      99****999999886778888877777777777777766888999888899999***********9999999*************999999776 PP

  Viral_helicase1  85 l 85 
                      +
       CCG92650.1 141 I 141
                      6 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00029      0.17       3      24 ..      41      62 ..      40      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00029
      AAA_33  3 llvGlpGsGKstlaerllkklg 24
                l+ G+ G+GK+tla+ l+k l 
  CCG92650.1 41 LFSGPRGTGKTTLARILAKSLN 62
                689**************99886 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00056      0.32      28      58 ..      32      62 ..       8      67 .. 0.79
   2 ?   -2.3   0.0       4.6   2.6e+03      95     117 ..     113     135 ..     104     140 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00056
       AAA_7 28 lllknkkpvllvGptGtGKtviikdllkkld 58
                 l +  +  l+ Gp GtGKt++++ l k+l+
  CCG92650.1 32 RLQRVAHAYLFSGPRGTGKTTLARILAKSLN 62
                556678899*************998888876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.6
       AAA_7  95 gPpggkklvvFvDDlnmpakeky 117
                  P +++  ++ +D+++m ++  +
  CCG92650.1 113 LPVQSRYKIYIIDEVHMLTQAAF 135
                 57888889999*****9877665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0079       4.6      48      70 ..      38      60 ..      17      72 .. 0.79
   2 ?    2.7   0.0      0.15        90      97     145 ..     107     153 ..      97     163 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0079
   IstB_IS21 48 enivllGpsGvGKshlaialgve 70
                ++ ++ Gp G+GK+ la  l+++
  CCG92650.1 38 HAYLFSGPRGTGKTTLARILAKS 60
                567889***********999876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.15
   IstB_IS21  97 gklaralkrllkvdllilDdlgllpldqaeaellfeviekryerrsiii 145
                  ++a++l    + ++ i+D++    l qa+ + l++++e+  ++   i 
  CCG92650.1 107 REAAKTLPVQSRYKIYIIDEVH--MLTQAAFNALLKILEEPPQHVKFIF 153
                 5667888888999*******85..56799*********99877766665 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00041      0.24       1      18 [.      46      63 ..      46      65 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00041
                TTSSHHHHHHHHHHHHTS CS
         SKI  1 mGaGKstvGkllAkklgl 18
                +G+GK+t++++lAk+l++
  CCG92650.1 46 RGTGKTTLARILAKSLNC 63
                79**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 4036.87
//
Query:       CCG92651.1  [L=49]
Description: hypothetical protein MFUM_720016 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 355.40
//
Query:       CCG92652.1  [L=162]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.079   11.9   2.1      0.098   11.6   2.1    1.1  1  PA26            PA26 p53-induced protein (sestrin)
       0.26   10.0   7.4       0.32    9.7   7.4    1.1  1  Presenilin      Presenilin
       0.72   10.2   5.5        1.5    9.1   5.5    1.5  1  MbeB_N          MbeB-like, N-term conserved region
        1.1    7.3   8.2        1.1    7.3   8.2    1.0  1  Hid1            High-temperature-induced dauer-formation prot
        1.7    8.3   8.4        2.4    7.8   8.4    1.3  1  tRNA_bind_2     Possible tRNA binding domain
        1.8    7.7  11.7        2.1    7.4  11.7    1.0  1  SOG2            RAM signalling pathway protein
        1.8    8.6   3.8        2.1    8.3   3.8    1.2  1  Neur_chan_memb  Neurotransmitter-gated ion-channel transmembr
        5.3    7.1  14.7       0.12   12.5   8.6    1.4  2  ATP-synt_B      ATP synthase B/B' CF(0)


Domain annotation for each model (and alignments):
>> PA26  PA26 p53-induced protein (sestrin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.1   4.4e-05     0.098     166     260 ..      38     151 ..      32     161 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.4e-05
        PA26 166 lasfvfgcglepeldlesskklksasas...................anekedsseeeeeelerkaaaeaeaevealmermkklqeeedeeeeaseeel 245
                 l sf +gc  +p+   ++ +k k++ ++                   ++++e+s  +++++  ++ +++a a  +al++++kk  ++ ++e++++ e l
  CCG92652.1  38 LFSFLIGCNPSPKSGDTNPDKKKEEATAsqesssqepalpspefsapKQKEENSPAASSSNPGEQDQTKAPAPEQALQQEVKKEADSVEKEAKQKAESL 136
                 668888888887776555544444433346667778888888877665567777777888888888888888889999999999999999998899999 PP

        PA26 246 serfekeesesllla 260
                 ++++e++ + ++  +
  CCG92652.1 137 ENNLEQQAQPQAPAT 151
                 999988887766544 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.4   0.00014      0.32     210     310 ..      33     135 ..      24     160 .. 0.31

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00014
  Presenilin 210 ifpaLiYsatvvvlaaeek.......kaevaeseeeeeaekkkeeasesskeeeseeesseksaqsse........seeeseeesseaessaeesseek 293
                  fp+L++s  +  + + ++       k+e+a++++e+++++ +  + e s+ +++ee+         +         e++++++ +++++ ++e ++e+
  CCG92652.1  33 FFPFLLFSFLIGCNPSPKSgdtnpdkKKEEATASQESSSQEPALPSPEFSAPKQKEEN---------SpaasssnpGEQDQTKAPAPEQALQQEVKKEA 122
                 6788888876666654443332221111111111111111111111111111111111.........01111111211111111111111111111111 PP

  Presenilin 294 eseessesseeeeeeee 310
                 +    s ++e+++++e+
  CCG92652.1 123 D----SVEKEAKQKAES 135
                 1....111111111111 PP

>> MbeB_N  MbeB-like, N-term conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.5   0.00069       1.5       9      40 ..     112     143 ..     112     147 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00069
      MbeB_N   9 ktFeqkskeqaeSteemvksafekheksvkea 40 
                 ++++q  k++a S+e+  k   e +e++++++
  CCG92652.1 112 QALQQEVKKEADSVEKEAKQKAESLENNLEQQ 143
                 6899*************************998 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.2    0.0005       1.1     593     690 ..      57     148 ..      17     161 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0005
        Hid1 593 dsideeeeenssessrieesrsesrspslsevpelksslaitddeskaereksatessssqavsqlremsekarakesaesteesrqesatskkspsg 690
                 d+++ee + ++++ss+ +   s + s+ ++++++  ++++ +++e+++++    +++ ++++++++ ++      +++a++++es +++ +++++p++
  CCG92652.1  57 DKKKEEATASQESSSQEPALPSPEFSAPKQKEENSPAASSSNPGEQDQTKAPAPEQALQQEVKKEADSV------EKEAKQKAESLENNLEQQAQPQA 148
                 333333333334444444444444444444444444444555555555544444444444433322222......22222233333333333332222 PP

>> tRNA_bind_2  Possible tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   8.4    0.0011       2.4     163     218 ..      84     141 ..      55     146 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
                  XXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  tRNA_bind_2 163 pkekeee..kaaeaeeeeakekelkpleesleeeLeeaakeveeklkekqrelidsld 218
                  pk+kee+  +a++++  e++++++ + e+ l++e++++a++ve++ k+k+++l ++l+
   CCG92652.1  84 PKQKEENspAASSSNPGEQDQTKAPAPEQALQQEVKKEADSVEKEAKQKAESLENNLE 141
                  45555445566777778888888889999******************99998877654 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  11.7   0.00095       2.1     242     341 ..      63     157 ..      31     161 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00095
        SOG2 242 srsrrssssgnsaspaangaqsetsersasssgvqssasstPlgegstspp.galsrqslsttgststltsssksrsssrsntnasastprslattpap 339
                 ++++++sss+++a p++ ++       ++++++++  +ss+P+++++t++p  +++ q+ ++++++s  +  +++ +s ++n + ++ +p+  at+p++
  CCG92652.1  63 ATASQESSSQEPALPSPEFS-----APKQKEENSPAASSSNPGEQDQTKAPaPEQALQQEVKKEADSVEKEAKQKAESLENN-LEQQAQPQAPATQPQT 155
                 33333444444444444444.....333333337888888999999998865333333334444443333333333333333.5556666666666665 PP

        SOG2 340 pa 341
                 pa
  CCG92652.1 156 PA 157
                 55 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.8   0.00094       2.1     127     199 ..      61     133 ..      16     159 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00094
                     ----------------------------------SS---TTGGG--.....-----TTTTTHHHHHHHHHHHH CS
  Neur_chan_memb 127 sseaeelilskskseskkaklseeqgsekastckckckegeeaspstqlskeelspelkkavegvkyiadhlr 199
                     ++++++  +s+++++++  + s  +++e++s+ +  +++ge+ ++++ + ++ l++e+kk  ++v+  a++  
      CCG92652.1  61 EEATASQESSSQEPALPSPEFSAPKQKEENSPAASSSNPGEQDQTKAPAPEQALQQEVKKEADSVEKEAKQKA 133
                     2222222222222223333333333333333333333333333333333333333333333333322222211 PP

>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.4       7.1   1.6e+04      74      76 ..      63      65 ..      57      73 .. 0.35
   2 ?   12.5   8.6   5.4e-05      0.12      41      97 ..      96     152 ..      89     157 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 7.1
  ATP-synt_B 74 Akk 76
                A++
  CCG92652.1 63 ATA 65
                111 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.4e-05
  ATP-synt_B  41 eAeerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlk 97 
                 +++   ++  ++ a +++ ++e+++eA+ + k+Ak++ae l +++e++a+ +a  ++
  CCG92652.1  96 SSNPGEQDQTKAPAPEQALQQEVKKEADSVEKEAKQKAESLENNLEQQAQPQAPATQ 152
                 5666678889999999*********************************98886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2630  (0.14669); expected 358.6 (0.02)
Passed bias filter:                     1064  (0.0593452); expected 358.6 (0.02)
Passed Vit filter:                       176  (0.0098165); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 1086.42
//
Query:       CCG92653.1  [L=721]
Description: Serine hydroxymethyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-172  573.6   0.0   2.2e-172  573.2   0.0    1.1  1  SHMT             Serine hydroxymethyltransferase
    3.8e-19   69.5   0.0    4.9e-18   65.9   0.0    2.4  2  LMWPc            Low molecular weight phosphotyrosine protein
      4e-17   62.5   0.0    8.9e-17   61.4   0.0    1.6  1  LacAB_rpiB       Ribose/Galactose Isomerase
    1.9e-12   47.0   0.0    2.9e-12   46.5   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
    7.4e-06   25.4   0.0      2e-05   24.0   0.0    1.5  1  Beta_elim_lyase  Beta-eliminating lyase
     0.0042   16.1   0.0     0.0073   15.3   0.0    1.4  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.036   13.4   0.0      0.058   12.7   0.0    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
      0.038   12.5   0.0      0.072   11.6   0.0    1.4  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
       0.08   11.2   0.0       0.17   10.1   0.0    1.4  2  Virul_Fac        Putative bacterial virulence factor


Domain annotation for each model (and alignments):
>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  573.2   0.0  1.1e-175  2.2e-172       1     399 []     312     688 ..     312     688 .. 0.99

  Alignments for each domain:
  == domain 1  score: 573.2 bits;  conditional E-value: 1.1e-175
                 HHHHTHHHHHHHHHHHHHHHHSEE-STT-----HHHHHHHTSGGGG----EETTEESSST-HHHHHHHHHHHHHHHHHCT-STTTEEEE---SSHHHHH CS
        SHMT   1 leesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGcefvdeveelaqdrakelfkldpakwgvnvqplsGsqan 99 
                 l+++dp+++ +ikke +rqk+++eliasenfts+av+ea+Gs+ltnkyaeGyPG+r+yGGce vde+e+la++rakelfk++    +vnvqp+sGsqan
  CCG92653.1 312 LAQNDPKIYFLIKKEAQRQKQNLELIASENFTSPAVMEAQGSCLTNKYAEGYPGRRWYGGCENVDEIESLAIERAKELFKAE----YVNVQPHSGSQAN 406
                 5789******************************************************************************....************* PP

                 HHHHHHHT-TT-EEEEESCTTTSTGGGT-BTSS-B-SHHHHHSEEEEE-B-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-S---HHHHHHHHHHTT- CS
        SHMT 100 lavytallepgdrilgldladGGhlthGakveskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevga 198
                 +avy a+l+p d+i+++dl++GGhlthG+k+++     s+k+f++++y+v+++++ idyd+le   +e+kPk+++aG+say+ +id+ rl+ iad+vga
  CCG92653.1 407 MAVYFAMLKPFDTIMSMDLSHGGHLTHGFKMNF-----SGKFFHVFHYGVSPKDERIDYDSLEAAVREHKPKMLIAGASAYPVIIDFPRLKSIADSVGA 500
                 ********************************9.....************************************************************* PP

                 EEEEE-GGGHHHHHTTSS--GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEEETTTEEEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHCTSHH CS
        SHMT 199 yllvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvdktgkevleelekkinsavfPglqGGPlnhviaakavalkealepe 297
                 yl+vdmahiaGlva+g++psP++yad+vtttthktlrGprgg+i+++               ++ k+i+s vfPg+qGGPl+hviaakav+++eal++ 
  CCG92653.1 501 YLMVDMAHIAGLVATGLHPSPIPYADFVTTTTHKTLRGPRGGVIFAK--------------AQYGKEIDSQVFPGIQGGPLVHVIAAKAVCFHEALQES 585
                 **********************************************9..............567888******************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTS.STTTT-SEEEEESHHHHHTT--HHHHHHH CS
        SHMT 298 fkvyqkqvlknakalaealkekgyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgd.ksalvtsGlrlGtpaltsrgfkeedlekv 395
                 f +yqkqv+knakalae lk++gy+lvsgGt+nhl+lvdlr+ g++Gk+a+ +l++v it+nknt+P+d   +   +G+r+G+pa+t+rg+ke+++  +
  CCG92653.1 586 FIEYQKQVIKNAKALAEGLKKNGYRLVSGGTENHLILVDLRPLGITGKEAQDILDSVGITVNKNTIPFDtVPPYQGGGIRIGSPAVTTRGMKENEMFDI 684
                 *********************************************************************7888999*********************** PP

                 HHHH CS
        SHMT 396 akfi 399
                 a++i
  CCG92653.1 685 AEWI 688
                 *997 PP

>> LMWPc  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   2.4e-21   4.9e-18      14     140 ..       1     128 [.       1     130 [. 0.95
   2 ?    0.6   0.0      0.34   6.8e+02      48      93 ..     383     432 ..     370     458 .. 0.72

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 2.4e-21
                 HHHHHHHHHHHHTT-CCCEEEEEEESTSTTT-B--HHHHHHHHHTTS--TT-BB-BS-HHHHHHSSEEEESSHHHHHHHHHHCCTTGGGGEEEGGGG.. CS
       LMWPc  14 mAealfrkelekagleekvevdSaGtgalvgkradpravevlkekgislsghvarqlskeelaelDlilamdeenkreleslapekekakvkllgey.. 110
                 mA  lf+++++    +++++vdSaG+ga  g ++  +a+ev++e gi++s  ++++++ e ++++D i++m  +++ +l  l+pe + +k++ll e+  
  CCG92653.1   1 MAKGLFESLIRG---NKDIKVDSAGIGAISGLPPSAHAIEVMAEIGIDISHIRSKPVNSELIRKADFIFCMSYSHLDSLLLLYPE-AGEKTFLLLEFan 95 
                 899999999999...699*******************************************************************.889********99 PP

                 ...SSTSS---HTTSSHHHHHHHHHHHHHHHHH CS
       LMWPc 111 ...teqldieDPyygeieafeevldeieeavkk 140
                        +i+DP +g+ie ++ ++d++ + + k
  CCG92653.1  96 dlpIMAREIPDPIGGSIELYKLCRDQMRQVMPK 128
                 8888899*******************9998766 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.34
                 -HHHHHHHHHTTS--TT-BB-BS-H....HHHHHSSEEEESSHHHHHHHH CS
       LMWPc  48 dpravevlkekgislsghvarqlsk....eelaelDlilamdeenkrele 93 
                  +ra e  k + ++++ h ++q +      +l+ +D i+ md ++ ++l+
  CCG92653.1 383 IERAKELFKAEYVNVQPHSGSQANMavyfAMLKPFDTIMSMDLSHGGHLT 432
                 5677777777778888777777654222257899********99987765 PP

>> LacAB_rpiB  Ribose/Galactose Isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   4.5e-20   8.9e-17       1     131 [.     158     286 ..     158     291 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 4.5e-20
                 EEEEE-GCGHHHHHHHHHHHHHTTTEEEEECESSSS---HHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHTT-- CS
  LacAB_rpiB   1 iaigsDhagfelkekikeyLkekghevidvgteseesvdYpdfakkvaeavasgeadlgiliCgtGiGmsiaaNkvkgiraalchdeesAklarehnna 99 
                 + +gs   g+elk++ ke L++ ++ ++++ +++   +d +++ +++a ++ +g+ d  il+ + Gi + iaaNk+++ ra+ ++  ++   a++  n+
  CCG92653.1 158 VLLGSNFYGAELKNASKEILETWHIPFEEIVPTD--PLDIVEMVERIAVELLEGNFDTSILFSKNGIDVEIAANKFPQLRAVRATALSDILVAKKELNC 254
                 579999**************99889999999776..5************************************************************** PP

                 SEEEEETTTS-HHHHHHHHHHHHHS---.HTH CS
  LacAB_rpiB 100 nvlalGarvigeelakeivkaFletefeeggr 131
                 nvl+lG++++++    +i+k++++ + e+  +
  CCG92653.1 255 NVLCLGSQYVKIADLPQILKTWIDGSIEKPAN 286
                 ***********************988864444 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   1.4e-15   2.9e-12      21     352 ..     345     672 ..     333     678 .. 0.78

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 1.4e-15
                    HHHHHHHHH.....HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THH.HHHH CS
  Aminotran_1_2  21 pevakaeke.....galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasy.knil 110
                    p+v++a+        a+  +++  yg ++  +e e+  ++ ++  e  k +   +v+  sG++a+ ++ +++lk  p d i + d++++ + ++++
     CCG92653.1 345 PAVMEAQGScltnkYAEGYPGRRWYGGCENVDEIESLAIERAK--ELFKAEYV-NVQPHSGSQANMAVYFAMLK--PFDTIMSMDLSHGGHlTHGF 435
                    5555555555555455555667778888888888888888888..77778888.*******************9..************98835688 PP

                    HHTTSE..EEEEEBEET.TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH CS
  Aminotran_1_2 111 rlsgge..vvryplyse.edfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavat 203
                    +++ +   ++ +++  + +d ++d ++le+a++e+     k+k+++      P  ++++ + l+ +   a++ +++l+vD+a+ ++   +     +
     CCG92653.1 436 KMNFSGkfFHVFHYGVSpKDERIDYDSLEAAVREH-----KPKMLIAGASAYP--VIIDFPRLKSI---ADSVGAYLMVDMAHIAGLVAT----GL 517
                    8874433678888876569***************6.....6677777655555..7999999****...99999**********999983....44 PP

                    HGGSTTSTTEEEEEESSSTT.SSGGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTE CS
  Aminotran_1_2 204 ranveeepnllivgslsKaf.GlaGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelgl 297
                    ++   ++ + +++++  K + G  G   G i+++a + + + + + p++    l+  ++a+a+   +  q+++ e +++++k++k l ++L++ g 
     CCG92653.1 518 HPSPIPYAD-FVTTTTHKTLrGPRG---GVIFAKAQYGKEIDSQVFPGIQgGPLVHVIAAKAVCFHEALQESFIEYQKQVIKNAKALAEGLKKNGY 609
                    888888888.888888887645555...*******999999999999999555566678889999999999********************99987 PP

                    EEECCS.CSSEEEEEETHH..CHHHHHHHHHHTCTEEEEEGGGGTS......TTEEEEECTTS- CS
  Aminotran_1_2 298 kvlasq.sgmflltdlsae..takelskkLleevgvyvtpgtsftv......pgrlRitvAglt 352
                      ++    + + l+dl+++  t ke+ + +l+ vg+ v ++t++         g +Ri  +++t
     CCG92653.1 610 RLVSGGtENHLILVDLRPLgiTGKEA-QDILDSVGITVNKNTIPFDtvppyqGGGIRIGSPAVT 672
                    77776668888899*****9766665.5578888999999998743346665445666665555 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   9.9e-09     2e-05      39     241 ..     384     612 ..     355     656 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 9.9e-09
                      HHHHHHTT-SEE.EEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-...EBTTTBE-HHHHHHHS--S-TTS-EE CS
  Beta_elim_lyase  39 davaelfgkeaa.lfvpqGtaAnsillkillqrgeevivtepahihfdetgaiaelagvklrdlk...nkeaGkmdlekleaaikevgaheeki 128
                      ++++elf +e++ +  ++G +An   + ++l++ + ++  + +h+   + g    ++g  ++ +    ++++  +d ++leaa++e   h++k 
       CCG92653.1 384 ERAKELFKAEYVnVQPHSGSQANMAVYFAMLKPFDTIMSMDLSHGGHLTHGFKMNFSGKFFHVFHygvSPKDERIDYDSLEAAVRE---HKPK- 473
                      67888999997625688**********************************9999988877666534456669*************...4443. PP

                      EEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-EEEEE-HH......... CS
  Beta_elim_lyase 129 klisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvGgvlafrddel....... 215
                       li  + +       +v +    +++ ia++ g  l++D A +a   ++ g +++ +  y+D vt    K l  + Ggv++ + + +       
       CCG92653.1 474 MLIAGASAY------PVII-DFPRLKSIADSVGAYLMVDMAHIAGL-VATGLHPSPI-PYADFVTTTTHKTLRGPRGGVIFAKAQ-Ygkeidsq 557
                      334333333......4444.46778999**************9975.5889999876.7*********************99999.779***** PP

                      ...............................HHHHHHHHHHHHT---SSTHHHHH CS
  Beta_elim_lyase 216 .............................edylaerveqrkylggglrqagvlaa 241
                                                    +y ++ ++ +k+l++gl++ g   +
       CCG92653.1 558 vfpgiqggplvhviaakavcfhealqesfIEYQKQVIKNAKALAEGLKKNGYRLV 612
                      **************************55555555566779*********997666 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.7e-06    0.0073     123     223 ..     454     556 ..     373     581 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.7e-06
                  TTSCBEGGGHHHH--.TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTE...SEEEEETTT.TTSSTT-EEEEEEH CS
  Aminotran_5 123 eegeldldeleklln.ektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgv...DflafsghK.llgPtGiGvlyvrk 215
                  ++ ++d d le++++ +k+k++ i+   ++  +i ++++++++a  +ga+++vD+a  +g     ++   +   Df++ ++hK l gP G Gv++++ 
   CCG92653.1 454 KDERIDYDSLEAAVReHKPKML-IA-GASAYPVIIDFPRLKSIADSVGAYLMVDMAHIAGLVATGLHPSPIpyaDFVTTTTHKtLRGPRG-GVIFAKA 548
                  4678899999999973455544.44.4456779***********************988777776666543333*********999****.9***999 PP

                  HHHHTS.. CS
  Aminotran_5 216 elleklep 223
                  ++ +++  
   CCG92653.1 549 QYGKEIDS 556
                  99888754 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.9e-05     0.058      92     155 ..     451     516 ..     445     547 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.9e-05
                      B-TTTSSB-GGGCGGG--TTE..EEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETT CS
  DegT_DnrJ_EryC1  92 vdpdtynidpaaieaaitert..kaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykg 155
                      v p++  id +++eaa+ e      I  + +y  + d+++lk ia++ g +++ D Ah  G    g
       CCG92653.1 451 VSPKDERIDYDSLEAAVREHKpkMLIAGASAYPVIIDFPRLKSIADSVGAYLMVDMAHIAGLVATG 516
                      7899999***********999756778899999*************************88876655 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.6e-05     0.072      73     214 ..     399     547 ..     376     606 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.6e-05
                      ESSHHHHHHHHHHTTS-TTEEEEEESTSSHH..HH....HHHHHTHHHTTCEEEEEST.TSHHHHHHHCCT.TEEEEEEESS-TTTT----HHH CS
  Cys_Met_Meta_PP  73 vssGmaAiaaailallkaGdeivvsddlYgg..tq....rllkkvlkklgievkfvdt.sdleelekaike.ntklvylEtptnpllkvvDiek 158
                        sG  A +a+ +a+lk  d i+++d  +gg  t+    ++  k+++ ++  v+  d   d ++le+a++e + k++   + + p+  ++D+++
       CCG92653.1 399 PHSGSQANMAVYFAMLKPFDTIMSMDLSHGGhlTHgfkmNFSGKFFHVFHYGVSPKDErIDYDSLEAAVREhKPKMLIAGASAYPV--IIDFPR 490
                      469*****9***************9999998554411114444556666666666665357899*****99789999888888886..89**** PP

                      HHHHHHHTT-EEEEEGTTTHTTTS-GGGGT....-SEEEEETTTTTTCSSS--EEEEEES CS
  Cys_Met_Meta_PP 159 iaklakkagvlvvvDntfaspllqrplklg....aDivvhSaTKylgGhsdvvaGvivvk 214
                      + ++a ++g+ ++vD + +++l+   l+      aD v+  + K l G     +Gvi +k
       CCG92653.1 491 LKSIADSVGAYLMVDMAHIAGLVATGLHPSpipyADFVTTTTHKTLRGPR---GGVIFAK 547
                      ********************999999887667779999999999998865...5666555 PP

>> Virul_Fac  Putative bacterial virulence factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   8.3e-05      0.17     373     406 ..     247     279 ..     238     288 .. 0.88
   2 ?   -3.9   0.0       1.4   2.9e+03     166     189 ..     672     695 ..     669     714 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8.3e-05
   Virul_Fac 373 tdeqelnvlllCtpsskqsevkdlgpvleeWidk 406
                 ++++eln  +lC  s+    ++dl+++l++Wid 
  CCG92653.1 247 VAKKELNCNVLCLGSQYV-KIADLPQILKTWIDG 279
                 7899*********99888.*************85 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.4
   Virul_Fac 166 pvpglseddvvdladYleknfaks 189
                 ++ g++e++++d+a++++++  ++
  CCG92653.1 672 TTRGMKENEMFDIAEWIHQALMHR 695
                 678999********9999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.49
# Mc/sec: 4437.86
//
Query:       CCG92654.1  [L=277]
Description: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-21   75.0   1.3      1e-20   73.9   1.3    1.5  1  Carboxyl_trans  Carboxyl transferase domain
      4e-08   33.2   4.5      4e-08   33.2   4.5    2.7  3  zf-ACC          Acetyl-coA carboxylase zinc finger domain
  ------ inclusion threshold ------
      0.046   13.9   1.2      0.084   13.1   0.2    1.8  2  IBR             IBR domain, a half RING-finger domain
        1.9    8.4   5.0       0.33   10.9   1.3    1.6  2  RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit


Domain annotation for each model (and alignments):
>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   1.3   2.3e-24     1e-20      10     180 ..      56     238 ..      53     246 .. 0.85

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 2.3e-24
                     EEEEEHTTSGGGEBEHHHHHH.........HHHHHHHHH....HHT..EEEEEEEESBETTEEHHHHTTEEEEESSTTSGGGCEEECHHHHHHHH CS
  Carboxyl_trans  10 areridllldpgsFgeledlf.........fhrvtelgr....kkklprdgvvtgsGaviGravevvaqdktvlggslgpakgekllkaqeeaik 91 
                     a+eri++l dp sF+e++  +           +++e+ +    +k   +++vv+g  ++    v++  +d+ +lggs+g + gek++++ e+ ++
      CCG92654.1  56 ALERISFLADPQSFVEYDHNLlsvdvlgfsGEKSYEERLryyqEKTGLNEAVVCGKCTIGSIPVFISVMDFNFLGGSMGSVVGEKITRTIERSLS 150
                     7899999999999999987542222222112333333336666677799********************************************** PP

                     HTEEEEEEEEE-ESSSGHHSSHHHHHHHHHHHHHHHHHHH.CS-EEEEESSEEETH.HHHHHHHTSEEEEETTEEEEESSTHHHHHHHHSS CS
  Carboxyl_trans  92 agepligindsgGaegriqegveslrgsGkifgenskasg.eIpqislvtgrcaGg.gaYlpalgdrvimveetskifltGpdvikkvlgr 180
                     ++ pli+i  sgGa  r+ eg+ sl +++k  ++ +++s+ +Ip+is++t ++++g  a  + lgd++i+  + + i+++G +vik  + +
      CCG92654.1 151 ERIPLIIISASGGA--RMYEGMISLMQMAKTSAALQRLSQaGIPYISVLTNPTMAGvTASFASLGDVIIAEPK-AMIGFAGSRVIKETTQQ 238
                     **************..************************************977636777889999998888.************99984 PP

>> zf-ACC  Acetyl-coA carboxylase zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   4.5     9e-12     4e-08       1      26 []      23      48 ..      23      48 .. 0.99
   2 ?   -3.9   1.7       3.4   1.5e+04      22      26 .]     108     112 ..     107     112 .. 0.80
   3 ?    1.9   0.0     0.053   2.4e+02      10      20 ..     259     269 ..     257     270 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 9e-12
      zf-ACC  1 WtKCpsCgemlykkeLernlyVCPkC 26
                WtKCpsC+  ly+keL+ n +VC  C
  CCG92654.1 23 WTKCPSCSRFLYNKELQLNQSVCQYC 48
                ***********************999 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.4
      zf-ACC  22 VCPkC 26 
                 VC kC
  CCG92654.1 108 VCGKC 112
                 78888 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.053
      zf-ACC  10 mlykkeLernl 20 
                 ++++k+L+ +l
  CCG92654.1 259 IIHRKDLRSSL 269
                 89*****9876 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   1.9e-05     0.084      18      48 ..      23      52 ..       8      57 .. 0.86
   2 ?   -1.6   0.0      0.75   3.4e+03      31      44 ..      99     112 ..      94     114 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.9e-05
         IBR 18 lkwCprpdCeaiiekseg.cksvtCskCgfef 48
                +++Cp   C++++ ++e   +++ C+ C++ f
  CCG92654.1 23 WTKCP--SCSRFLYNKELqLNQSVCQYCQHHF 52
                89***..9***9999998777789*****998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.75
         IBR  31 eksegcksvtCskC 44 
                 ek+  ++ v C kC
  CCG92654.1  99 EKTGLNEAVVCGKC 112
                 44444666889998 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.3   7.3e-05      0.33       4      33 ..      26      54 ..      26      56 .. 0.90
   2 ?   -3.3   0.1         2     9e+03      22      27 ..     107     112 ..      98     113 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.3e-05
                    ESTTTSBEEEEECSCCCEEEESSSS-EEES CS
  RNA_POL_M_15KD  4 CpkCgNlLlpkedkegknfeCrqCgYeepa 33
                    Cp+C   L++ke ++++   C  C+ ++p 
      CCG92654.1 26 CPSCSRFLYNKELQLNQS-VCQYCQHHFPL 54
                    ****************84.69999999995 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2
                     EEESSS CS
  RNA_POL_M_15KD  22 feCrqC 27 
                     + C +C
      CCG92654.1 107 VVCGKC 112
                     447777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2069.79
//
Query:       CCG92655.1  [L=31]
Description: hypothetical protein MFUM_720020 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 259.22
//
Query:       CCG92656.1  [L=60]
Description: hypothetical protein MFUM_720021 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       141  (0.00786435); expected 358.6 (0.02)
Passed bias filter:                      135  (0.0075297); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 476.41
//
Query:       CCG92657.1  [L=65]
Description: hypothetical protein MFUM_720022 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 497.87
//
Query:       CCG92658.1  [L=58]
Description: hypothetical protein MFUM_720024 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.023   14.3   1.4      0.031   13.9   1.4    1.2  1  P66_CC       Coiled-coil and interaction region of P66A and P
       0.19   12.0   2.2       0.24   11.6   2.2    1.2  1  Snurportin1  Snurportin1


Domain annotation for each model (and alignments):
>> P66_CC  Coiled-coil and interaction region of P66A and P66B with MBD2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.4   3.5e-06     0.031       8      22 ..       9      23 ..       2      26 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.5e-06
      P66_CC  8 rmikkLreeLRnEEa 22
                +++kk+re+LR++Ea
  CCG92658.1  9 ETVKKMREDLRKDEA 23
                579***********9 PP

>> Snurportin1  Snurportin1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.2   2.7e-05      0.24      18      34 ..       2      18 ..       1      21 [. 0.93

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.7e-05
  Snurportin1 18 eRRrrlLerqKekRldy 34
                 +RR++++e+ K+ R+d+
   CCG92658.1  2 KRRKEIIETVKKMREDL 18
                 8**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1115  (0.0621897); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 411.08
//
Query:       CCG92659.1  [L=100]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 751.99
//
Query:       CCG92660.1  [L=45]
Description: hypothetical protein MFUM_720026 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 333.28
//
Query:       CCG92661.1  [L=87]
Description: hypothetical protein MFUM_720027 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 662.01
//
Query:       CCG92662.1  [L=66]
Description: hypothetical protein MFUM_720028 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       170  (0.00948185); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 526.27
//
Query:       CCG92663.1  [L=71]
Description: hypothetical protein MFUM_720030 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 547.17
//
Query:       CCG92664.1  [L=245]
Description: hypothetical protein MFUM_720031 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-05   23.5   0.1       0.06   13.6   0.0    2.5  3  TPR_12           Tetratricopeptide repeat
    0.00031   20.5   0.2        1.1    9.2   0.0    2.3  2  TPR_10           Tetratricopeptide repeat
    0.00071   19.4   0.2       0.53   10.4   0.0    2.8  3  TPR_7            Tetratricopeptide repeat
     0.0013   18.7   0.0        0.5   10.6   0.0    3.2  3  TPR_2            Tetratricopeptide repeat
      0.003   17.8   0.1        1.2    9.7   0.0    3.3  3  TPR_17           Tetratricopeptide repeat
     0.0033   17.9   0.0          2    9.3   0.0    3.1  3  TPR_4            Tetratricopeptide repeat
     0.0049   16.6   0.0       0.71    9.8   0.0    2.6  2  TPR_1            Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.025   14.8   0.0        2.4    8.6   0.0    3.0  3  TPR_8            Tetratricopeptide repeat
      0.027   14.6   0.0      0.037   14.2   0.0    1.2  1  Cob_adeno_trans  Cobalamin adenosyltransferase


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.6   1.3e+04      54      66 ..      49      61 ..      47      63 .. 0.77
   2 !    7.2   0.0     0.003       6.1       5      30 ..      87     112 ..      83     123 .. 0.79
   3 !   13.6   0.0     3e-05      0.06      43      73 ..     149     179 ..     147     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.6
      TPR_12 54 lyralgryeeAle 66
                +++++g+  +A++
  CCG92664.1 49 AHLRSGDISAAEK 61
                6788888888875 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.003
      TPR_12   5 alnnlaavlrrlgrydeAlellekal 30 
                 +lnnla++  ++ r++e+ +ll + +
  CCG92664.1  87 VLNNLAVIRVHQNRLEESSQLLSRTI 112
                 57788999999999998888887765 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 3e-05
      TPR_12  43 ltattlrnLgrlyralgryeeAlelleeala 73 
                 l++ +l+nL+++yr++g++e+A  l  +al+
  CCG92664.1 149 LLSLCLFNLATVYRLQGNTEDAGPLEAKALK 179
                 5677999999999999999999888888876 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00058       1.1       5      31 ..      88     114 ..      87     119 .. 0.87
   2 !    9.2   0.0   0.00056       1.1       7      29 ..     156     178 ..     152     179 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00058
      TPR_10   5 lnNLanalrqrgrydeAealleealai 31 
                 lnNLa++  +++r++e+ +ll +++  
  CCG92664.1  88 LNNLAVIRVHQNRLEESSQLLSRTIKD 114
                 8******************99888765 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00056
      TPR_10   7 NLanalrqrgrydeAealleeal 29 
                 NLa ++r +g+ ++A  l  +al
  CCG92664.1 156 NLATVYRLQGNTEDAGPLEAKAL 178
                 9**************99888887 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.6   3.2e+03       7      20 ..      48      61 ..      47      73 .. 0.83
   2 !    5.9   0.0    0.0077        15       2      21 ..      88     107 ..      87     119 .. 0.83
   3 !   10.4   0.0   0.00027      0.53       1      18 [.     153     170 ..     153     178 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.6
       TPR_7  7 rlysrlGdyeeAie 20
                +++ r Gd + A++
  CCG92664.1 48 QAHLRSGDISAAEK 61
                68999999888875 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0077
       TPR_7   2 LlnLarlysrlGdyeeAiel 21 
                 L+nLa++++ +++ ee  +l
  CCG92664.1  88 LNNLAVIRVHQNRLEESSQL 107
                 9************9997555 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00027
       TPR_7   1 aLlnLarlysrlGdyeeA 18 
                 +L+nLa +y+ +G++e+A
  CCG92664.1 153 CLFNLATVYRLQGNTEDA 170
                 79**************99 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.66   1.3e+03       9      25 ..      48      64 ..      48      70 .. 0.80
   2 ?    3.6   0.0     0.044        88       3      26 ..      87     110 ..      86     113 .. 0.85
   3 !   10.6   0.0   0.00025       0.5       3      33 ..     153     183 ..     151     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.66
       TPR_2  9 layyklgdyeeAleafe 25
                +a++++gd   A++   
  CCG92664.1 48 QAHLRSGDISAAEKSAL 64
                5899*****99998765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.044
       TPR_2   3 alynlGlayyklgdyeeAleafek 26 
                 +l+nl+ +  +++++ee  +++ +
  CCG92664.1  87 VLNNLAVIRVHQNRLEESSQLLSR 110
                 689**************9887766 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00025
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 +l+nl+ +y+ +g+ e+A  +  kAl+ +P+
  CCG92664.1 153 CLFNLATVYRLQGNTEDAGPLEAKALKWNPK 183
                 79****************8888888888775 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.066   1.3e+02      14      31 ..      86     103 ..      84     106 .. 0.86
   2 !    9.7   0.0    0.0006       1.2      15      32 ..     153     170 ..     150     171 .. 0.90
   3 ?    0.0   0.0      0.73   1.5e+03       4      17 ..     176     189 ..     175     193 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.066
      TPR_17  14 daynnLAelllknGdlmt 31 
                 +++nnLA++  ++++l++
  CCG92664.1  86 PVLNNLAVIRVHQNRLEE 103
                 699******999998876 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0006
      TPR_17  15 aynnLAelllknGdlmtA 32 
                  ++nLA++++ +G++++A
  CCG92664.1 153 CLFNLATVYRLQGNTEDA 170
                 68*************998 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.73
      TPR_17   4 kaleldPnnadayn 17 
                 kal+ +P+ + +++
  CCG92664.1 176 KALKWNPKLSSLMQ 189
                 89*****9988775 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.071   1.4e+02       5      21 ..      44      60 ..      41      60 .. 0.85
   2 ?    1.0   0.0      0.48   9.6e+02       5      24 ..      89     108 ..      86     110 .. 0.82
   3 !    9.3   0.0     0.001         2       3      20 ..     153     170 ..     151     173 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.071
       TPR_4  5 laLArallalGdldeAr 21
                +++ +a+l+ Gd  +A+
  CCG92664.1 44 IDRVQAHLRSGDISAAE 60
                78899*******98886 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.48
       TPR_4   5 laLArallalGdldeArall 24 
                  +LA    ++ +l+e  +ll
  CCG92664.1  89 NNLAVIRVHQNRLEESSQLL 108
                 689***********976665 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.001
       TPR_4   3 allaLArallalGdldeA 20 
                 +l +LA ++ ++G+ ++A
  CCG92664.1 153 CLFNLATVYRLQGNTEDA 170
                 689*************99 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.021        43       3      26 ..      87     110 ..      85     113 .. 0.83
   2 !    9.8   0.0   0.00036      0.71       3      20 ..     153     170 ..     151     171 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyek 26 
                 +l+nl+++  ++++++e  +  ++
  CCG92664.1  87 VLNNLAVIRVHQNRLEESSQLLSR 110
                 79**************98776665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00036
                 HHHHHHHHHHHTT-HHHH CS
       TPR_1   3 alynlGnayfklgkydeA 20 
                 +l+nl+ +y+ +g+ ++A
  CCG92664.1 153 CLFNLATVYRLQGNTEDA 170
                 699*************98 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.95   1.9e+03       9      23 ..      48      62 ..      42      65 .. 0.84
   2 ?    1.9   0.0      0.17   3.3e+02       2      22 ..      86     106 ..      85     111 .. 0.87
   3 ?    8.6   0.0    0.0012       2.4       4      33 ..     154     183 ..     152     184 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.95
                HHHHHTT-HHHHHHH CS
       TPR_8  9 siylklgdyeeAkey 23
                +++l  gd+ +A+++
  CCG92664.1 48 QAHLRSGDISAAEKS 62
                789999***999987 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.17
                 CHHHHHHHHHHHTT-HHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAke 22 
                 ++++nl+ i   ++++ee+ +
  CCG92664.1  86 PVLNNLAVIRVHQNRLEESSQ 106
                 689**************9876 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++nl+ +y+ +g+ e A     kal+++p+
  CCG92664.1 154 LFNLATVYRLQGNTEDAGPLEAKALKWNPK 183
                 79**************************97 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.9e-05     0.037      21     124 ..      33     150 ..      27     187 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.9e-05
                      TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHH.HHT...............-BTCCG-S--HHHHHHHHHHHHHHH CS
  Cob_adeno_trans  21 KddprveayGtvDelnsaiglarallaeeeeelkeaLeeiqneLfdlgae.latp..............ekkkekkkiteeeveelekeidele 99 
                      K  +++ + G +D +++++      +  +e+++ ++L+ +q++L ++  + +                 ++ +e++++ ++++++ ++eid+le
       CCG92664.1  33 KRLIVIIVPGMIDRVQAHLRSGDISA--AEKSALTDLKLVQSRLRKAAFSgIG-LipvlnnlavirvhqNRLEESSQLLSRTIKDGQREIDRLE 123
                      666788899**********9888444..4567778888888888887776322.12355666666777655566666777789********776 PP

                      ..HHS--EESEEES-SSHHHHHHHHHH CS
  Cob_adeno_trans 100 ..aelpplksfilpggspaaaalhvaR 124
                        + ++p + +ilpggs+ + +++++ 
       CCG92664.1 124 lqSGYNPWSWYILPGGSKGSEQIKYLL 150
                      558999************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 1950.57
//
Query:       CCG92665.1  [L=940]
Description: Outer membrane receptor protein, mostly Fe transport [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-08   34.8   0.2    4.2e-08   33.7   0.2    1.6  1  Plug      TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.2   2.3e-12   4.2e-08       3     107 ..     152     253 ..     150     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 2.3e-12
                 GCCSSEEEEEEHHHHHHTT..TSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHC. CS
        Plug   3 kdtpgsvsvvtaediekqg..atsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpianggsgagdlssidpedierievlkGpasa. 98 
                  dtp sv+v+t+++ie+++   +++  ++   pg+    +++ g++s  +iRG+     + +++G+ ++  ++++     ++++d+++i+++ Gp    
  CCG92665.1 152 IDTPRSVQVITKQEIEQSAfvTQNVMSLMYMAPGLY--MGTTFGEFSVPNIRGM---PANKYINGM-LSFLPGTGYEGGPMNMNDFDQINIVQGPTMPs 244
                 589***************6558999999999*****..6***************...67789****.67799999999***************987543 PP

                 TTSSTGSSE CS
        Plug  99 lyGsdaigG 107
                 l   +a+gG
  CCG92665.1 245 LLSIRAAGG 253
                 666677766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (940 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 6774.50
//
Query:       CCG92666.1  [L=195]
Description: hypothetical protein MFUM_720033 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-08   32.1   2.5     0.0031   17.5   0.1    3.5  3  TPR_2     Tetratricopeptide repeat
    3.5e-07   29.8   0.8    0.00082   19.1   0.0    3.3  3  TPR_1     Tetratricopeptide repeat
    1.6e-06   28.3   1.1    0.00022   21.4   0.2    3.0  2  TPR_12    Tetratricopeptide repeat
      2e-05   24.3   3.6    0.00017   21.3   0.1    3.1  3  TPR_10    Tetratricopeptide repeat
     0.0011   19.5   1.4        1.5    9.5   0.7    2.8  3  TPR_16    Tetratricopeptide repeat
     0.0016   19.1   0.6        3.7    8.6   0.2    2.8  2  TPR_14    Tetratricopeptide repeat
     0.0032   17.5   2.0      0.075   13.3   0.0    3.1  3  TPR_8     Tetratricopeptide repeat
     0.0079   16.2   0.7       0.25   11.5   0.0    3.3  4  TPR_7     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.018   15.4   0.2        1.2    9.7   0.0    2.9  2  TPR_17    Tetratricopeptide repeat
      0.033   14.7   0.6         17    6.0   0.2    3.4  3  TPR_19    Tetratricopeptide repeat
      0.053   13.8   0.9        2.5    8.5   0.0    3.5  4  PPR       PPR repeat
       0.11   13.2   1.5        4.5    8.2   0.4    3.3  3  TPR_4     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.2    0.0029       4.4       7      25 ..      51      69 ..      49      72 .. 0.90
   2 !   17.5   0.1   2.1e-06    0.0031       4      28 ..      90     114 ..      88     120 .. 0.95
   3 ?    5.2   0.0     0.017        26       2      33 ..     156     187 ..     155     188 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0029
       TPR_2  7 lGlayyklgdyeeAleafe 25
                +++a++++g+++eA++a e
  CCG92666.1 51 QAQALLNSGHPAEAEKAAE 69
                699*************987 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 2.1e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAl 28 
                 ++nlG +y+  g+y eA++ f +A+
  CCG92666.1  90 YNNLGVVYATEGKYSEAHKMFARAI 114
                 89*********************98 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.017
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                  +l+n +   +  g+  eA+ +  +A +ldPn
  CCG92666.1 156 LCLMNNAATFRMEGKMTEAISLEHQAHKLDPN 187
                 6788889999999******************9 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.49   7.3e+02       8      23 ..      52      67 ..      47      69 .. 0.87
   2 !   19.1   0.0   5.5e-07   0.00082       4      28 ..      90     114 ..      88     117 .. 0.94
   3 !    6.7   0.0    0.0046       6.9       2      33 ..     156     187 ..     155     188 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.49
                HHHHHHTT-HHHHHHH CS
       TPR_1  8 GnayfklgkydeAley 23
                ++a+++ g + eA+++
  CCG92666.1 52 AQALLNSGHPAEAEKA 67
                78999999999*9987 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 5.5e-07
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekAL 28 
                 ++nlG++y   gky eA + + +A+
  CCG92666.1  90 YNNLGVVYATEGKYSEAHKMFARAI 114
                 9**********************98 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0046
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                  +l n +++++  gk  eA+    +A +l+Pn
  CCG92666.1 156 LCLMNNAATFRMEGKMTEAISLEHQAHKLDPN 187
                 67889999***********************8 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   1.5e-07   0.00022      31      72 ..      77     114 ..      45     119 .. 0.82
   2 ?    4.3   0.0     0.034        51       4      30 ..     157     182 ..     150     187 .. 0.55

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.5e-07
      TPR_12  31 eiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 +  r+++G  +  ++  ++nLg +y   g+y eA++++ +a+
  CCG92666.1  77 A--RASFGSFS--LLLPYNNLGVVYATEGKYSEAHKMFARAI 114
                 3..55799888..899************************97 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.034
      TPR_12   4 talnnlaavlrrlgrydeAlellekal 30 
                 +++ n aa+ r  g+++eA++l ++a+
  CCG92666.1 157 CLM-NNAATFRMEGKMTEAISLEHQAH 182
                 333.55555556666666655544444 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.11   1.7e+02       9      27 ..      52      70 ..      52      75 .. 0.82
   2 !   21.3   0.1   1.1e-07   0.00017       5      36 ..      90     121 ..      90     124 .. 0.93
   3 ?   -0.7   0.1      0.94   1.4e+03       2      28 ..     155     181 ..     154     184 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
      TPR_10  9 analrqrgrydeAeallee 27
                a al + g  +eAe+ +e 
  CCG92666.1 52 AQALLNSGHPAEAEKAAEA 70
                6789999999999998876 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 1.1e-07
      TPR_10   5 lnNLanalrqrgrydeAealleealairrrll 36 
                 +nNL++++   g+y eA +++ +a+ + r+++
  CCG92666.1  90 YNNLGVVYATEGKYSEAHKMFARAIGLGRAAV 121
                 8************************9988876 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.94
      TPR_10   2 AsslnNLanalrqrgrydeAealleea 28 
                 A +l N a++ r  g+ +eA  l ++a
  CCG92666.1 155 ALCLMNNAATFRMEGKMTEAISLEHQA 181
                 667778788888889999999998887 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.7     0.001       1.5       2      22 ..      50      70 ..      50      72 .. 0.93
   2 !    7.6   0.0    0.0041       6.1       3      27 ..      93     117 ..      91     127 .. 0.84
   3 ?   -2.4   0.0       5.3   7.9e+03      44      57 ..     165     178 ..     154     189 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.001
      TPR_16  2 alaraalragdyddAaaalea 22
                ++a+a+l++g++++A++a+ea
  CCG92666.1 50 KQAQALLNSGHPAEAEKAAEA 70
                59****************986 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0041
      TPR_16   3 laraalragdyddAaaaleaalkrd 27 
                 l+  ++  g+y +A +++ +a+ ++
  CCG92666.1  93 LGVVYATEGKYSEAHKMFARAIGLG 117
                 667788999**********999887 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 5.3
      TPR_16  44 alrqgrlaeAaaly 57 
                 +   g ++eA+ l 
  CCG92666.1 165 FRMEGKMTEAISLE 178
                 45567777777554 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.2    0.0025       3.7       7      26 ..      51      70 ..      49      70 .. 0.91
   2 !    7.8   0.0    0.0045       6.7       7      29 ..      93     115 ..      90     123 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0025
      TPR_14  7 laeallalGdpdeAiallrr 26
                 a+all++G p+eA++++++
  CCG92666.1 51 QAQALLNSGHPAEAEKAAEA 70
                69**************9985 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0045
      TPR_14   7 laeallalGdpdeAiallrrala 29 
                 l+ ++++ G++ eA +++ ra+ 
  CCG92666.1  93 LGVVYATEGKYSEAHKMFARAIG 115
                 6789****************985 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.15   2.2e+02       7      25 ..      51      69 ..      49      70 .. 0.87
   2 !   13.3   0.0     5e-05     0.075       4      30 ..      90     116 ..      89     119 .. 0.95
   3 ?   -2.4   0.0       5.4   8.1e+03       6      14 ..     131     139 ..     130     140 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.15
                HHHHHHHTT-HHHHHHHHH CS
       TPR_8  7 lgsiylklgdyeeAkeyye 25
                 ++++l+ g   eA+++ e
  CCG92666.1 51 QAQALLNSGHPAEAEKAAE 69
                5899***********9876 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 5e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekalel 30 
                 y+nlg +y + g+y eA + + +a+ l
  CCG92666.1  90 YNNLGVVYATEGKYSEAHKMFARAIGL 116
                 99**********************976 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 5.4
                 HHHHHHHHT CS
       TPR_8   6 nlgsiylkl 14 
                   gs+y++ 
  CCG92666.1 131 SAGSTYRQA 139
                 568888875 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.98   1.5e+03       6      25 ..      52      71 ..      51      78 .. 0.78
   2 !   11.5   0.0   0.00017      0.25       2      27 ..      90     115 ..      89     127 .. 0.87
   3 ?   -3.3   0.0       8.4   1.3e+04       6      13 ..     133     140 ..     131     140 .. 0.68
   4 ?   -0.1   0.0      0.84   1.3e+03       7      21 ..     163     177 ..     157     188 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.98
       TPR_7  6 arlysrlGdyeeAielyeqs 25
                a++  + G+ +eA++  e+ 
  CCG92666.1 52 AQALLNSGHPAEAEKAAEAD 71
                78888999999999877774 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00017
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLa 27 
                 ++nL+++y  +G+y+eA + + ++++
  CCG92666.1  90 YNNLGVVYATEGKYSEAHKMFARAIG 115
                 89***************999999654 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 8.4
       TPR_7   6 arlysrlG 13 
                 +++y++ G
  CCG92666.1 133 GSTYRQAG 140
                 67787765 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.84
       TPR_7   7 rlysrlGdyeeAiel 21 
                  +++ +G++ eAi+l
  CCG92666.1 163 ATFRMEGKMTEAISL 177
                 55555799999*997 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.17   2.5e+02      20      34 .]      52      66 ..      50      66 .. 0.91
   2 ?    9.7   0.0   0.00081       1.2      15      34 .]      89     108 ..      87     108 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.17
      TPR_17 20 AelllknGdlmtArq 34
                A++ll+ G +++A++
  CCG92666.1 52 AQALLNSGHPAEAEK 66
                99***********85 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00081
      TPR_17  15 aynnLAelllknGdlmtArq 34 
                 +ynnL+++++  G++ +A++
  CCG92666.1  89 PYNNLGVVYATEGKYSEAHK 108
                 6***************9985 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2     0.011        17      32      47 ..      52      67 ..      42      78 .. 0.72
   2 ?    3.5   0.0     0.069     1e+02       4      18 ..     100     114 ..      92     127 .. 0.82
   3 ?    1.1   0.0      0.39   5.9e+02       3      23 ..     167     187 ..     165     191 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.011
      TPR_19 32 AeallalgqldeAeal 47
                A+all++g+++eAe++
  CCG92666.1 52 AQALLNSGHPAEAEKA 67
                7888888888888875 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.069
      TPR_19   4 egdyaeAlalleqal 18 
                 eg+y eA++++++a+
  CCG92666.1 100 EGKYSEAHKMFARAI 114
                 788888888888874 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.39
      TPR_19   3 aegdyaeAlalleqalqedpk 23 
                 +eg+ +eA++l  qa + dp+
  CCG92666.1 167 MEGKMTEAISLEHQAHKLDPN 187
                 79999******9999999997 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.63   9.4e+02       1      13 [.       2      14 ..       2      17 .. 0.85
   2 ?   -1.7   0.0       3.1   4.6e+03       9      19 ..      54      64 ..      43      66 .. 0.58
   3 ?    8.5   0.0    0.0017       2.5       3      25 ..      90     112 ..      89     117 .. 0.86
   4 ?   -0.2   0.0       1.1   1.6e+03      13      22 ..     168     177 ..     165     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.63
         PPR  1 vtynslIsgyckn 13
                ++y slI+ ++++
  CCG92666.1  2 ISYRSLIRWLVQC 14
                59******99875 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.1
         PPR  9 gycknGkleeA 19
                ++  +G + eA
  CCG92666.1 54 ALLNSGHPAEA 64
                44555666666 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0017
         PPR   3 ynslIsgycknGkleeAlelfke 25 
                 yn l  +y+ +Gk++eA ++f +
  CCG92666.1  90 YNNLGVVYATEGKYSEAHKMFAR 112
                 8888899**************76 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.1
         PPR  13 nGkleeAlel 22 
                 +Gk+ eA++l
  CCG92666.1 168 EGKMTEAISL 177
                 79*****997 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.4     0.003       4.5       7      25 ..      51      69 ..      49      70 .. 0.88
   2 ?    1.0   0.0      0.62   9.2e+02       6      21 ..      92     107 ..      88     112 .. 0.85
   3 ?    0.4   0.1         1   1.5e+03       4      16 ..     113     125 ..     111     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.003
       TPR_4  7 LArallalGdldeAralle 25
                +A+all  G+++eA+ ++e
  CCG92666.1 51 QAQALLNSGHPAEAEKAAE 69
                59************97776 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.62
       TPR_4   6 aLArallalGdldeAr 21 
                 +L+ +++  G + eA 
  CCG92666.1  92 NLGVVYATEGKYSEAH 107
                 89********999985 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1
       TPR_4   4 llaLArallalGd 16 
                 +++L+ra+  +G+
  CCG92666.1 113 AIGLGRAAVSQGE 125
                 5789999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1390.56
//
Query:       CCG92667.1  [L=50]
Description: hypothetical protein MFUM_720034 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 439.35
//
Query:       CCG92668.1  [L=232]
Description: Predicted amidophosphoribosyltransferase ComF [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-07   28.6   0.0    1.3e-06   28.0   0.0    1.2  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.022   14.2   0.0      0.032   13.7   0.0    1.2  1  UPRTase       Uracil phosphoribosyltransferase
      0.067   12.7   0.1       0.32   10.5   0.1    1.9  2  PRTase_2      Phosphoribosyl transferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   2.2e-10   1.3e-06      39     124 ..     133     230 ..     131     232 .] 0.72

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.2e-10
                   TTHHHHHHHHHHS....TT-EE-EEEEEE-TTT--EE.................EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-.BSEEEEE CS
  Pribosyltran  39 gGvpfakiladeL....evplayvrkvkyrpdgseeaargssdes.........rlledpagkkVliVDDildtGgTllaalelLkekg.peevria 121
                   +G+ +a +la  L     +++   +k+ + ++++++ +   +  s         +   d+  k  li+DDi+ tG T++a +e Lk++g ++e+ + 
    CCG92668.1 133 RGFNLAEELALSLcrrqQLEYLPALKRVKFSQQQTGLSLLEK--SinirdsfrlKRGFDLSAKNLLIIDDIMFTGATVEACAEVLKKEGrAQEIAVL 227
                   678888888888888776666655555555555555543222..23578999999999*************************66665515588887 PP

                   EEE CS
  Pribosyltran 122 vlv 124
                   +++
    CCG92668.1 228 TIA 230
                   775 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.4e-06     0.032     118     159 ..     189     229 ..     162     231 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.4e-06
     UPRTase 118 kiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsv 159
                 ++++++ l++D ++ TG+++ a+ ++Lk++g + ++I vl++
  CCG92668.1 189 DLSAKNLLIIDDIMFTGATVEACAEVLKKEG-RAQEIAVLTI 229
                 568899***********************77.5788999875 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.16   9.3e+02      25      45 ..     123     143 ..     122     177 .. 0.74
   2 ?   10.5   0.1   5.4e-05      0.32     120     158 ..     191     229 ..     181     231 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.16
    PRTase_2  25 iPvkpstvreagaaLaellae 45 
                 +P +p++ r+ g +Lae+la 
  CCG92668.1 123 VPLHPKKFRKRGFNLAEELAL 143
                 799999999999999999873 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 5.4e-05
    PRTase_2 120 aakelvLvDDEistGktalnliralqeklprkryvvvsl 158
                 +ak+l+++DD + tG t+ + ++ l+++  +++++v+++
  CCG92668.1 191 SAKNLLIIDDIMFTGATVEACAEVLKKEGRAQEIAVLTI 229
                 6799************************999***99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1658.29
//
Query:       CCG92669.1  [L=283]
Description: CAAX amino terminal protease family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-10   39.5  16.0    1.8e-09   37.8  13.9    2.8  2  CPBP             CPBP intramembrane metalloprotease


Domain annotation for each model (and alignments):
>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8  13.9     1e-13   1.8e-09       8      89 ..     117     231 ..       2     234 .. 0.89
   2 ?   -1.3   0.0      0.17     3e+03      38      50 ..     254     266 ..     239     274 .. 0.63

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1e-13
                 HHHHHHHHHHHHHHHHTTCHHHHHHHH.S-HHHHHHHHHHHHHCSGGG.......HHHH............................HHHHHHHHHHHH CS
        CPBP   8 fllalllapllEEllfRglllqllqergsstlailissilFglaHlpn.......gpsv............................llaalaGlvlgy 71 
                 ++  +  ++++EE+++Rg+ll  +++  +++ a+++s+ +F+l H+ n          +                            l ++l+G++lg+
  CCG92669.1 117 IFSKAAAVAIIEEVMMRGILLGVFMRSIGELPALVASAGVFSLSHFLNnkpqnypD--FhptlgsgfqvllemfqpvlrlewisiqgLILFLLGILLGV 213
                 45578899*******************888******************97666440..26666666677888889999999999999************ PP

                 HHHHTT-HHHHHHHHHHH CS
        CPBP  72 lylktgsllaaillHall 89 
                 +y+++++++ +i +H+++
  CCG92669.1 214 AYINGKNIWQPIGIHGGI 231
                 ***************987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHH CS
        CPBP  38 tlailissilFgl 50 
                 ++  ++s+il+ +
  CCG92669.1 254 VILAVFSAILWIF 266
                 5555666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1937.25
//
Query:       CCG92670.1  [L=321]
Description: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-54  181.5   0.0    1.1e-53  181.0   0.0    1.2  1  ACCA            Acetyl co-enzyme A carboxylase carboxyltransf
    3.3e-15   55.7   0.0    3.6e-15   55.6   0.0    1.1  1  Carboxyl_trans  Carboxyl transferase domain
     0.0006   19.2   0.5      0.003   16.9   0.5    2.0  1  ECH_1           Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
      0.081   12.9   2.0       0.19   11.7   2.0    1.5  1  Prefoldin_2     Prefoldin subunit
       0.16   11.9   0.6        0.3   11.1   0.6    1.3  1  FlxA            FlxA-like protein


Domain annotation for each model (and alignments):
>> ACCA  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.0   0.0     3e-57   1.1e-53       1     144 []       6     149 ..       6     149 .. 0.99

  Alignments for each domain:
  == domain 1  score: 181.0 bits;  conditional E-value: 3e-57
        ACCA   1 lldfekpiaeleekieelkklaeesevdlseeieklekkleklkkeiyknltpwqkvqlaRhpeRpktldyiealfedfvelhGDrafadDkAivggla 99 
                 +ldfekpi e+ e+ie+lk+ +  s+ +l+++ + l++kle+lkk+iy++l+pwq+vq+aRhp+Rp++ldyi++l +df+el+GDr f++D +ivgg+ 
  CCG92670.1   6 YLDFEKPIVEVIEQIERLKTNNGLSAEELEKQRNILNTKLEELKKTIYSSLSPWQRVQIARHPKRPYFLDYIKRLSSDFFELNGDRLFGNDLSIVGGFL 104
                 69************************************************************************************************* PP

        ACCA 100 rlegqpvmvigqqKGrdtkerlkrnfGmakPeGYrKAlrlmklAe 144
                 +++g + m igq KGr++ke+l+rnfG++ PeGYrKAlrlmklA+
  CCG92670.1 105 TIDGIKAMAIGQMKGRTLKENLARNFGCPLPEGYRKALRLMKLAN 149
                 *******************************************95 PP

>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0     1e-18   3.6e-15     283     429 ..      98     247 ..      31     300 .. 0.82

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 1e-18
                     TEEEEEEEETTEEEEEEEE--S........EEETTEE-HHHHHHHHHHHHHHHHTT--EEEEE-BSEE--SHHHHHTTHHHHHHHHHHHHHT--S CS
  Carboxyl_trans 283 tvVvGfArlgGipvGvvAnetr........veaGqvlfidsavKaarfirlcdaenlPlviladvrGflvGqrqeyggilkhGaklvdalaeakv 369
                     ++V Gf  ++Gi    +++ +          + G +  +++  Ka r ++l ++++lP+++++d++G  +G   e+  +  ++a+ +++++  +v
      CCG92670.1  98 SIVGGFLTIDGIKAMAIGQMKGrtlkenlaRNFG-CPLPEGYRKALRLMKLANKFHLPIITFIDTAGAYPGIGSEERHVGAAIATNLMEMSGFTV 191
                     5788999999999999999988999999988999.************************************************************ PP

                     -EEEEE-TEEEHHHHHTTTGGGSTTTTEEETTT-EEESS-HHHHHHHHSHHHHHHHHHHH CS
  Carboxyl_trans 370 PkitvilrkayGGayvvmdskingadlvaawptariaVlgpegaveilfrkekaaaemer 429
                     P+++v+++++  G+ ++++ +    d +++ ++a  +V+ peg ++il++++k+a ++++
      CCG92670.1 192 PIVSVVIGEGGSGGALGIGVA----DRILMMENAYYSVISPEGCAAILWKDKKHAPQAAK 247
                     *********999999999988....34445559*******************99887665 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.5   8.3e-07     0.003      73     178 ..     175     270 ..     160     314 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8.3e-07
                 HHCCHHHHHHHHHHSSSEEEEEE-SEEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSS CS
       ECH_1  73 lkeevlelwtklytvpkpviaavnGaaigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvd 171
                 +  ++  ++++++   +p+++ v G +  GG++   ++D + + +na ++       + p+ ++   +     k+ A +++ l  k++aqe+l+ G++d
  CCG92670.1 175 VGAAIATNLMEMSGFTVPIVSVVIGEGGSGGALGIGVADRILMMENAYYSV------ISPEGCAAILWKD---KKHAPQAAKL-LKLTAQELLELGIID 263
                 566677889999999*****************9999************997......4455555444443...3444444433.36789********** PP

                 EEESGGG CS
       ECH_1 172 kvvpeeq 178
                 +++pe +
  CCG92670.1 264 QIIPEPK 270
                 ****943 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.0   5.3e-05      0.19      59     102 ..      12      55 ..       7      57 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.3e-05
                  -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
  Prefoldin_2  59 dkeevkeeLeerketlekeiktlekqleklekeleelkeelqkk 102
                  +  ev+e+ e  k +     ++lekq   l+++leelk+++++ 
   CCG92670.1  12 PIVEVIEQIERLKTNNGLSAEELEKQRNILNTKLEELKKTIYSS 55 
                  5568999**********************************975 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   8.4e-05       0.3      24      65 ..      11      52 ..       8      55 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.4e-05
        FlxA 24 kQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQI 65
                k i ++ +q++ l++++ l++ee +kq++ + ++++ l++ I
  CCG92670.1 11 KPIVEVIEQIERLKTNNGLSAEELEKQRNILNTKLEELKKTI 52
                55677889****************************999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       898  (0.0500865); expected 358.6 (0.02)
Passed bias filter:                      742  (0.0413855); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2306.10
//
Query:       CCG92671.1  [L=144]
Description: 6,7-dimethyl-8-ribityllumazine synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-35  120.5   0.0    5.7e-35  120.2   0.0    1.0  1  DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase


Domain annotation for each model (and alignments):
>> DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.0   3.2e-39   5.7e-35       2     139 ..       7     137 ..       6     138 .. 0.95

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 3.2e-39
                    EEEEEEEESTTHHHHHHHHHHHHHHHHHCTTSSCCEEEEEESSCCCHHHHHHHHCTSTT.-.SEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHHH CS
  DMRL_synthase   2 lriaiVvarfneeitdkllegaldelkeagvaeenidvvtVPGafElplaakklaessk.yldavialGvvirGetphfeyvaeavskglmrvsld 96 
                    +r+aiVv+++++e t++l+e+ald l+ ++v     dv++VPGafE+pl a++la+ +k y d + ++G+v +G+t h   + +a++++lmr+ l+
     CCG92671.1   7 FRFAIVVSSYHKEYTSRLVESALDILQGHKV-----DVFWVPGAFEIPLQAQRLAR-KKiY-DCILCFGIVWQGKTAHAAEILRACTDALMRIGLE 95 
                    59**************************995.....7*******************.4546.********************************** PP

                    CTS-EEEEEEEESSHHCCHHCCTSTCCCHHHHHHHHHHHHHHH CS
  DMRL_synthase  97 tgvPvifgvltvdteeqaleraggkagnkGeeaaeaalemanl 139
                    +++P+i  vl   t++qa++r  g + n+G e a++ale+++l
     CCG92671.1  96 NDLPIIHEVLSIRTQSQAKARTMG-KLNRGIEGAKTALEVLSL 137
                    **********************55.69************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1038.71
//
Query:       CCG92672.1  [L=147]
Description: N utilization substance protein B homolog [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-37  128.2   0.6    2.6e-37  128.0   0.6    1.0  1  NusB             NusB family
  ------ inclusion threshold ------
      0.055   13.3   0.6      0.077   12.8   0.6    1.2  1  DUF2451          Protein of unknown function C-terminus (DUF2
       0.14   12.4   0.8        2.8    8.3   0.1    2.7  2  Antimicrobial_8  Uperin family


Domain annotation for each model (and alignments):
>> NusB  NusB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   0.6   4.4e-41   2.6e-37       2     133 ..      10     135 ..       9     136 .. 0.93

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 4.4e-41
                 HHHHHHHHHHHHHHHH-S-..HHHHHHHHHHHT-.......--HHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT--GGGS-HHHHHHHHHHHHHHTTS- CS
        NusB   2 kaRelalqalyqveinked..eeekeailqealnklleeedldeedkafltelvkgvlrnleelDeliekllknwplerlskvdraiLrlavyellyld 98 
                 k Rel++q lyq+e+nke+  e+    +++ a          +eedk+ ++e ++ +++++++++e i++++knw+l+rl+ vd+ iL+l++ye+ly++
  CCG92672.1  10 KIRELIIQFLYQWEMNKESpfEQILSLFWDVAEI--------KEEDKKVVEEWIRDIVKRKKTIEEKINSYIKNWSLDRLAIVDKCILMLGIYEILYRK 100
                 79***********999999666666666666666........********************************************************* PP

                 SSHHHHHHH.HHHHHHHHS-HHHHHHHHHHHHHHH CS
        NusB  99 dvPakvaineavelakkygdeksakFvNgVLrkva 133
                 d+P+ v+ine ve+akky++e s kFvNgVL+++ 
  CCG92672.1 101 DIPPAVTINESVEIAKKYSTEASGKFVNGVLDAIR 135
                 ********************************985 PP

>> DUF2451  Protein of unknown function C-terminus (DUF2451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6   1.3e-05     0.077      51     112 ..       8      70 ..       3      91 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
     DUF2451  51 vadlrepiykavasrllnleslleaianvkWdvkevatehssYvdqllkevesfskklqe.lk 112
                  + +re+i++++ +  +n es  e+i +  Wdv e++ e ++ v+++++++ + +k+++e ++
  CCG92672.1   8 RRKIRELIIQFLYQWEMNKESPFEQILSLFWDVAEIKEEDKKVVEEWIRDIVKRKKTIEEkIN 70 
                 56899**********************************************999999998333 PP

>> Antimicrobial_8  Uperin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.073   4.3e+02       8      15 ..      68      75 ..      67      75 .. 0.93
   2 ?    8.3   0.1   0.00047       2.8       1       8 [.     129     136 ..     129     136 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.073
  Antimicrobial_8  8 KiVsaIKN 15
                     Ki s IKN
       CCG92672.1 68 KINSYIKN 75
                     999****9 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00047
  Antimicrobial_8   1 GVGDliRK 8  
                      GV+D+iRK
       CCG92672.1 129 GVLDAIRK 136
                      9******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1139  (0.0635284); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 951.24
//
Query:       CCG92673.1  [L=282]
Description: Signal recognition particle GTPase FtsY [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-69  231.5   0.2    7.7e-69  231.3   0.2    1.1  1  SRP54            SRP54-type protein, GTPase domain
    5.3e-05   23.3   0.0    0.00011   22.3   0.0    1.6  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
    0.00011   22.0   1.0    0.00021   21.1   0.6    1.6  1  AAA_30           AAA domain
    0.00016   21.6   0.2    0.00035   20.6   0.1    1.7  1  AAA_31           AAA domain
    0.00058   20.3   0.1     0.0015   19.0   0.1    1.7  1  AAA_16           AAA ATPase domain
    0.00085   18.7   0.0     0.0012   18.2   0.0    1.3  1  Zeta_toxin       Zeta toxin
    0.00091   18.3   0.0     0.0013   17.8   0.0    1.3  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0011   18.8   0.0     0.0023   17.9   0.0    1.5  1  APS_kinase       Adenylylsulphate kinase
      0.002   18.4   0.1     0.0042   17.4   0.1    1.6  1  AAA_22           AAA domain
     0.0021   17.4   0.0     0.0027   17.0   0.0    1.1  1  DUF2075          Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
      0.019   15.2   0.1      0.029   14.6   0.1    1.3  1  AAA_28           AAA domain
      0.019   14.6   0.1      0.033   13.9   0.1    1.4  1  Thymidylate_kin  Thymidylate kinase
       0.02   15.1   0.2      0.044   14.0   0.2    1.6  1  SRP54_N          SRP54-type protein, helical bundle domain
      0.033   13.7   0.0       0.05   13.2   0.0    1.2  1  Myb_Cef          pre-mRNA splicing factor component
      0.034   13.9   0.0      0.053   13.2   0.0    1.3  1  AAA_24           AAA domain
      0.047   13.9   0.0       0.08   13.1   0.0    1.5  1  AAA_33           AAA domain
      0.048   13.1   0.0      0.089   12.2   0.0    1.4  1  KTI12            Chromatin associated protein KTI12
      0.056   13.9   0.0       0.11   13.0   0.0    1.5  1  AAA_17           AAA domain
      0.058   13.3   1.0      0.088   12.7   0.2    1.8  2  NACHT            NACHT domain
      0.058   13.9   0.1       0.11   13.0   0.1    1.5  1  ABC_tran         ABC transporter
      0.063   13.7   0.2       0.11   12.9   0.2    1.5  1  AAA              ATPase family associated with various cellul
      0.068   12.6   0.0       0.11   12.0   0.0    1.3  1  Fer4_NifH        4Fe-4S iron sulfur cluster binding proteins,
      0.072   12.8   0.0       0.22   11.2   0.0    1.8  2  IstB_IS21        IstB-like ATP binding protein
      0.091   11.9   0.6       0.33   10.1   0.5    1.8  2  ArsA_ATPase      Anion-transporting ATPase
      0.092   12.2   0.3       0.28   10.6   0.1    1.8  2  ParA             NUBPL iron-transfer P-loop NTPase
      0.095   12.3   0.0       0.19   11.3   0.0    1.4  1  AAA_27           AAA domain
       0.11   12.2   0.1         17    5.1   0.1    2.2  2  ATP_bind_1       Conserved hypothetical ATP binding protein
       0.12   11.7   0.2       0.21   10.9   0.2    1.4  1  ATPase           KaiC
       0.12   11.6   0.2       0.83    8.9   0.2    2.0  1  MipZ             ATPase MipZ
       0.17   12.4   0.4       0.17   12.4   0.4    2.0  2  AAA_23           AAA domain
       0.19   11.3   0.7       0.47   10.0   0.6    1.7  1  AAA_25           AAA domain


Domain annotation for each model (and alignments):
>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.3   0.2   1.3e-71   7.7e-69       2     195 ..      81     280 ..      80     281 .. 0.98

  Alignments for each domain:
  == domain 1  score: 231.3 bits;  conditional E-value: 1.3e-71
                 EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE--SSTTHHH CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakeavekakeekidvvlvDTaGrlqndke 100
                  villvG++G GKTtt+aKLa ++k+egkkv l+a+DtfRaaA+eQLk++a+kl+ pvi+++e+ d+a+va++a+++a ++++d+++vDTaGr++n+k+
  CCG92673.1  81 GVILLVGVNGGGKTTTAAKLAYKFKSEGKKVYLAACDTFRAAATEQLKIWADKLELPVISAREGVDAASVAFRAFSQASQSQADYLIVDTAGRQANKKN 179
                 59************************************************************************************************* PP

                 HHHHHHHHHHHH......SSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEEE-SSSTTGEEE--HHHHHHH CS
       SRP54 101 lmeelkkikkvv......kpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfigvGekiedleefdperlvsr 193
                 lm el kikk++       p  vllv+d+t+g++++ qa++F+ea+g++++++tklD++akgG + ++++el++P  fig Ge++e le+f+pe ++++
  CCG92673.1 180 LMLELGKIKKTLekasgqIPLFVLLVVDGTSGSNVLIQAREFHEALGLSAMVVTKLDSSAKGGMIAAVKYELGIPTLFIGRGENLEALEAFSPEGFIEE 278
                 ************999999999****************************************************************************98 PP

                 HH CS
       SRP54 194 ll 195
                 ++
  CCG92673.1 279 FF 280
                 76 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.9e-07   0.00011       9      71 ..      90     199 ..      83     268 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.9e-07
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH.................................................CCHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................xxxx RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep.................................................dlkr 58 
                 G GKTt+aa+La  ++ +g++V l  +D+ + +++  e+l++  ++                                                  l +
  CCG92673.1  90 GGGKTTTAAKLAYKFKSEGKKVYLAACDTFRAAAT--EQLKIWADKlelpvisaregvdaasvafrafsqasqsqadylivdtagrqankknlmlELGK 186
                 56**************************9988876..33333333355578888888888888888888888888888888888888877777775555 PP

                 CCHHHHHHCHCHH CS
                 xxxxxxxxxxxxx RF
        CbiA  59 llellealgkkka 71 
                 ++++le+ +++ +
  CCG92673.1 187 IKKTLEKASGQIP 199
                 5555555554433 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.6   3.7e-07   0.00021      20     103 ..      82     177 ..      77     200 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.7e-07
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglAptgkaAkv...La............eelgieastiakllkrlk...grarlepgtllivDEagmv 100
                 v +l+G+ G GKtt+ ++l+  ++++g++v ++A     A++   L+            +  g++a+++a          ++a+ ++++ livD ag  
  CCG92673.1  82 VILLVGVNGGGKTTTAAKLAYKFKSEGKKVYLAACDTFRAAAteqLKiwadklelpvisAREGVDAASVA------FrafSQASQSQADYLIVDTAGRQ 174
                 7899***************************999865444440114455544444444434444444444......0444334456779*****99987 PP

      AAA_30 101 dtk 103
                 ++k
  CCG92673.1 175 ANK 177
                 655 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1     6e-07   0.00035      11      62 ..      90     141 ..      81     198 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 6e-07
      AAA_31  11 GGvGKTTtsvnlaaalaklgkkvLlvDlDp.Qanattglgiekneiektlyev 62 
                 G  GKTTt+ +la+ + ++gkkv l  +D+  a+at +l+i  +++e  ++++
  CCG92673.1  90 G-GGKTTTAAKLAYKFKSEGKKVYLAACDTfRAAATEQLKIWADKLELPVISA 141
                 4.5**************************934566778888777766655555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   2.5e-06    0.0015      20     105 ..      76     163 ..      58     210 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.5e-06
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql.esaipysa.laqalareellrqllde.aesaeleawrekleeal 105
                   g+p+++ll+G  G GK++ + +l+  ++ +g  +  + cd +  +a++ +  +a+ l+   ++ + +   a+s +++a++++ ++++
  CCG92673.1  76 PIGQPGVILLVGVNGGGKTTTAAKLAYKFKSEGKKVYLAACDTFrAAATEQLKiWADKLEL-PVISAREGVdAASVAFRAFSQASQSQA 163
                 46999*********************99999977777777777732223334449999944.666666655233333444444333333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     2e-06    0.0012      14      97 ..      78     164 ..      67     221 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2e-06
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerqgnvvrldp.DdlRelhPeyeeilka..dpkkaseltqkdaselvekllqeaiengyn 97 
                  +P +ill+G  G GK+++a++l+ +++++g+ v l + D++R+   e  +i ++  +    s+    da  ++ +++ +a +   +
  CCG92673.1  78 GQPGVILLVGVNGGGKTTTAAKLAYKFKSEGKKVYLAAcDTFRAAATEQLKIWADklELPVISAREGVDAASVAFRAFSQASQSQAD 164
                 68**************************88888888654999988766666665422333344444455566666666666666655 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.3e-06    0.0013      26      97 ..      77     150 ..      56     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.3e-06
                 -S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE--..----------------HCCCTSTTEEEEEE CS
        MeaB  26 aGraqvvGltGvPGaGkstlvealglelrrrGkrvavlavDP..sspftGGsilGDklRleelavdegvfiRsl 97 
                  G+  v+ l Gv G Gk t+  +l+ +++++Gk+v + a D   ++  +   i  Dkl l  +++ egv   s+
  CCG92673.1  77 IGQPGVILLVGVNGGGKTTTAAKLAYKFKSEGKKVYLAACDTfrAAATEQLKIWADKLELPVISAREGVDAASV 150
                 577889999********************************722444555678888888888888877765555 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.9e-06    0.0023       2      49 ..      80     127 ..      79     135 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.9e-06
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT- CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdL 49 
                 + v++l G+ g GK+t a +l+ k +++g++vyl   d+ R   +++L
  CCG92673.1  80 PGVILLVGVNGGGKTTTAAKLAYKFKSEGKKVYLAACDTFRAAATEQL 127
                 5699************************************99887777 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   7.2e-06    0.0042       4     102 ..      79     173 ..      77     208 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 7.2e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka......erlsseell.ealeqalraraviell 95 
                 + g+++++G  G GKTt++++l+++++ e      +++v+   l++  + +  ++e l+++ ++l+       e+ +   +  +a+ qa++++a+   l
  CCG92673.1  79 QPGVILLVGVNGGGKTTTAAKLAYKFKSE------GKKVY---LAACDTFRAAATEQLKIWADKLELpvisarEGVDAASVAfRAFSQASQSQAD--YL 166
                 5689**********************544......44444...3333333333333333333222223333554455555555777777777777..77 PP

      AAA_22  96 iiDEaqh 102
                 i+D a +
  CCG92673.1 167 IVDTAGR 173
                 7776655 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.7e-06    0.0027       3     131 ..      82     207 ..      80     210 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.7e-06
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrll 101
                 v+l  Gv G GKt  + +l+++    ++e ++vyl     ++++  e+l+  +   k +  +   ++ + ++s   +a +++++ ++d +ivD A r  
  CCG92673.1  82 VILLVGVNGGGKTTTAAKLAYKF---KSEGKKVYLAACDTFRAAATEQLKIWA--DKLELPVISAREGVDAASVAFRAFSQASQSQADYLIVDTAGRQA 175
                 78889*****************9...99999******************8777..455555555555555555446688899****************9 PP

     DUF2075 102 tksdqaekqse.enqlkelmkrak.vvvalvD 131
                 +k++   +  + ++ l++   +   +v+++vD
  CCG92673.1 176 NKKNLMLELGKiKKTLEKASGQIPlFVLLVVD 207
                 98887555533344444444442246666666 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   4.9e-05     0.029       2      81 ..      83     171 ..      82     175 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.9e-05
      AAA_28   2 ivitGgestGKTtlleaLa....argypvv...pEaareileeklakgedalpwvedllafaervleeql....eeeaaaaankvlfcDrg 81 
                 i ++G  ++GKTt++++La    ++g +v+    +++r   +e+l+ + d+l+    ++  +e+v ++ +      +a++++ ++l++D+ 
  CCG92673.1  83 ILLVGVNGGGKTTTAAKLAykfkSEGKKVYlaaCDTFRAAATEQLKIWADKLELP--VISAREGVDAASVafraFSQASQSQADYLIVDTA 171
                 7899***************666422433332358999999999999999888853..4444444433333110034455578899999985 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   5.7e-05     0.033       3      29 ..      87     113 ..      85     123 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.7e-05
                      ESTTSSHHHHHHHHHHHHHHTTE.EEE CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegikvvl 29 
                      G++G GKtt a++l+ ++k+eg+kv+l
       CCG92673.1  87 GVNGGGKTTTAAKLAYKFKSEGKKVYL 113
                      9*********************99876 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   7.7e-05     0.044      30      68 ..      23      57 ..       3      68 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.7e-05
                HHHHHHHTT--HHHHHHHHHHHHHHHHCTTSS-HHHHHH CS
     SRP54_N 30 leeaLleaDVgvkvvkklienvkkkavgekklkpkqqvk 68
                 e +L+e+D+g+++ +kl + ++k+++     ++++  +
  CCG92673.1 23 WEAILIESDLGINLSQKLYSLLEKEKLL----TRTDLAE 57
                589*******************886654....3333333 PP

>> Myb_Cef  pre-mRNA splicing factor component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.6e-05      0.05     154     187 ..      45      91 ..      33     128 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.6e-05
     Myb_Cef 154 neeapltdlqkaeelIkkEmltllhhDalknPl.............k 187
                 ++e+ lt    ae+ I+kE++ +l +D+l +P+             +
  CCG92673.1  45 EKEKLLTRTDLAERRIRKELIAILGNDSLSFPIgqpgvillvgvngG 91 
                 34467889999**********************66666666655551 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.2e-05     0.053       4      75 ..      82     172 ..      80     194 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.2e-05
      AAA_24   4 kiliyGpsgiGKTtlakel.......gpkplfi..dtekGlksldadkfpdieswedfldevvel................aaeladyktlviDtid 75 
                  il++G +g GKTt+a++l       g+k+ +   dt++ +++++  k+     w+d l+  v                  +a +++ + l++Dt++
  CCG92673.1  82 VILLVGVNGGGKTTTAAKLaykfkseGKKVYLAacDTFR-AAATEQLKI-----WADKLELPVISaregvdaasvafrafsQASQSQADYLIVDTAG 172
                 589****************99999964444433224444.333333332.....3333333332234444444777888888888888889999876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00014      0.08       1      37 [.      82     123 ..      82     189 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00014
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....avllssdtlrrrl 37 
                 ++llvG++G GK+t a +l+ k +     ++l + dt+r + 
  CCG92673.1  82 VILLVGVNGGGKTTTAAKLAYKFKsegkkVYLAACDTFRAAA 123
                 89*****************76655555655555556655544 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00015     0.089       4      42 ..      83     121 ..      81     135 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
                 EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH. CS
       KTI12   4 vvltGlPssGKstrakeLakaleeekrsvvviddeslgi 42 
                 ++l G+   GK+t a++La ++++e+++v++   ++++ 
  CCG92673.1  83 ILLVGVNGGGKTTTAAKLAYKFKSEGKKVYLAACDTFRA 121
                 8999**************************998888774 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00019      0.11       1      86 [.      86     178 ..      86     207 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00019
                 EE-TTSSHHHHHHHHHHHH....TEEEEEHHHHHHHHHHTT.TSHSSHHHHC..TSHHHHHHHHHHHHHHHHHHHH..HSSEEEEEE-SEEEETT CS
      AAA_17   1 lGgPGsGKgtqceklveky....gfthlsaGdllreeakrg.glakardemr..klpleekkelqkeaaekiaeea..kkkgvlvdghprikeqa 86 
                 +G+ G GK+t ++kl+ k+    +  +l a d +r+ a+++ +     d+++    + +e  +    a ++  +++  + + ++vd+  r  +++
  CCG92673.1  86 VGVNGGGKTTTAAKLAYKFksegKKVYLAACDTFRAAATEQlKI--WADKLElpVISAREGVDAASVAFRAFSQASqsQADYLIVDTAGRQANKK 178
                 79**************99877756778999*****998765333..3344432245555555566666666666653233446777766655544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   0.00015     0.088       2      28 ..      82     108 ..      81     128 .. 0.87
   2 ?   -2.3   0.0       6.4   3.7e+03      79      89 ..     198     208 ..     149     218 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00015
                 CEEEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegk 28 
                 +++l G +G GKTt ++kla + +++ 
  CCG92673.1  82 VILLVGVNGGGKTTTAAKLAYKFKSEG 108
                 689******************999876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.4
                 SCCCEEEEEE- CS
       NACHT  79 lperlLlilDg 89 
                 +p  +Ll++Dg
  CCG92673.1 198 IPLFVLLVVDG 208
                 33335566666 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   0.00019      0.11       3      44 ..      72     113 ..      70     180 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00019
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeill 44 
                  +s+ + +  ++ +vG nG GK+t ++ la + k +  ++ l
  CCG92673.1  72 SLSFPIGQPGVILLVGVNGGGKTTTAAKLAYKFKSEGKKVYL 113
                 577888888899**************9999998877666654 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   0.00019      0.11       1      27 [.      83     112 ..      83     197 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00019
                 EEEESSTTSSHHHHHHHHHHHHTHE...EE CS
         AAA   1 vllyGppGtGKTllakavakelgve...fl 27 
                 +ll+G  G GKT++a  +a ++++e   ++
  CCG92673.1  83 ILLVGVNGGGKTTTAAKLAYKFKSEgkkVY 112
                 69*******************975422222 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00019      0.11       5      38 ..      85     118 ..      82     148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
   Fer4_NifH   5 iyGkGGiGksttsqnlsaalaemgkkvlivGCDP 38 
                 + G  G Gk+tt++ l+  +++ gkkv +  CD 
  CCG92673.1  85 LVGVNGGGKTTTAAKLAYKFKSEGKKVYLAACDT 118
                 5688899**************************6 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00038      0.22      40      83 ..      72     116 ..      37     134 .. 0.74
   2 ?   -1.9   0.0         4   2.3e+03     106     125 ..     160     179 ..     151     198 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00038
   IstB_IS21  40 tlsf.iekkenivllGpsGvGKshlaialgveavraglsvlfvrv 83 
                 +lsf i +   i+l+G  G GK+  a+ l+++   +g++v+    
  CCG92673.1  72 SLSFpIGQPGVILLVGVNGGGKTTTAAKLAYKFKSEGKKVYLAAC 116
                 45555667778999*************************986554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4
   IstB_IS21 106 llkvdllilDdlgllpldqa 125
                   ++d li+D  g +  +++
  CCG92673.1 160 QSQADYLIVDTAGRQANKKN 179
                 45678899999988765444 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.5   0.00057      0.33       3      38 ..      82     117 ..      81     123 .. 0.89
   2 ?   -1.0   0.0       1.4   7.9e+02     111     133 ..     150     171 ..     132     194 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00057
                  EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase   3 vilvgGKGGVGKttvsaatavklsekgkkvllistD 38 
                  vil+ G  G GKtt +a +a+k   +gkkv l + D
   CCG92673.1  82 VILLVGVNGGGKTTTAAKLAYKFKSEGKKVYLAACD 117
                  5788888888********************987776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
                  HHHHHHHHHHHCSSSSEEEEESB CS
  ArsA_ATPase 111 lsfeellkyvkeeeydvvvlDta 133
                  ++f ++++   +++ d++++Dta
   CCG92673.1 150 VAFRAFSQAS-QSQADYLIVDTA 171
                  5666666654.456699999998 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00048      0.28      11      42 ..      87     118 ..      80     157 .. 0.81
   2 ?   -1.4   0.0       2.2   1.3e+03     105     119 ..     156     170 ..     139     172 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00048
        ParA  11 gKGGVGKStvavnlAlaLakkglkvgllDaDi 42 
                 g  G GK+t+a++lA++++++g+kv l   D 
  CCG92673.1  87 GVNGGGKTTTAAKLAYKFKSEGKKVYLAACDT 118
                 44466********************9877775 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.2
        ParA 105 kdvewgelDyLiiDl 119
                 ++++ ++ DyLi+D+
  CCG92673.1 156 SQASQSQADYLIVDT 170
                 55666789*****97 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00032      0.19      16      72 ..      70     123 ..      67     129 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00032
      AAA_27  16 drsldfsaeeadlhliyGpNEAGKstalrAisdllfGipertkdnflhdakkLriga 72 
                 + sl+f+ +++++ l++G N  GK+t+ +   +l + ++ + k+ +l + ++ r +a
  CCG92673.1  70 NDSLSFPIGQPGVILLVGVNGGGKTTTAA---KLAYKFKSEGKKVYLAACDTFRAAA 123
                 679**********************9864...6778888777777777777666655 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.029        17       2      30 ..      86     114 ..      85     128 .. 0.88
   2 ?    5.0   0.0     0.031        18      88     155 ..     160     233 ..     140     237 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.029
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrsvavv 30 
                 vG+ G GKtt   +l+  ++++g++v++ 
  CCG92673.1  86 VGVNGGGKTTTAAKLAYKFKSEGKKVYLA 114
                 899*******************9999875 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.031
  ATP_bind_1  88 keeddyllfDtPG.QielfthseslakiveeLes...efalvvvyLvDsqrltd....ptkfisgllsalsamlrl 155
                 + ++dyl++Dt G Q    +++ +l ki ++Le+   +++l v+ +vD +  ++    + +f ++  + lsam+ +
  CCG92673.1 160 QSQADYLIVDTAGrQANKKNLMLELGKIKKTLEKasgQIPLFVLLVVDGTSGSNvliqAREFHEA--LGLSAMVVT 233
                 4567*********88888888999999*****999788899999999976665544447777777..555555555 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00036      0.21      20      60 ..      81     120 ..      71     207 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00036
      ATPase  20 rvvlitGepGtGKtifalqFlikgaekygepgvfvtveepa 60 
                  v+l++G+ G GKt+ a++ ++k  ++ g+++ + + +   
  CCG92673.1  81 GVILLVGVNGGGKTTTAAKLAYKFKSE-GKKVYLAACDTFR 120
                 589*******************99666.9998877777654 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2    0.0014      0.83      11     115 ..      90     178 ..      82     187 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0014
                 TSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT------EEE-SSS-HHHHTTS-HHHHHHHHHHHHHHHHHH-SEEEEE--S CS
        MipZ  11 GsGksttavhvavaLlkkGarvaaidldlrqrtlarylenraataerkglsLplpealalseaeeaeveeeeeaevaeleelvadleaeldfividtPG 109
                 G Gk+tta  +a  + ++G++v     d+ +++ +  l+    +a+  +l+Lp+ +a            e+ +a  +++++  ++ ++++d++++dt G
  CCG92673.1  90 GGGKTTTAAKLAYKFKSEGKKVYLAACDTFRAAATEQLK---IWAD--KLELPVISA-----------REGVDAASVAFRAFSQASQSQADYLIVDTAG 172
                 567777777777777777777777666665555544332...3333..344554444...........56777777889999999999*********** PP

                 S--HHH CS
        MipZ 110 sdsals 115
                 ++ +  
  CCG92673.1 173 RQANKK 178
                 987765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   0.00029      0.17      12      35 ..      70      96 ..      59     102 .. 0.82
   2 ?   -0.3   0.1       2.3   1.3e+03     134     166 ..     165     195 ..      98     222 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00029
      AAA_23 12 dqeidF...skgltlItGpNGaGKTTi 35
                + ++ F    +g+ l++G NG GKTT 
  CCG92673.1 70 NDSLSFpigQPGVILLVGVNGGGKTTT 96
                55677888889***************6 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2.3
      AAA_23 134 lilflgqerfeefelkdkke.......rleelekeleele 166
                 +++   ++r+                 +l +++k le+++
  CCG92673.1 165 YLIVDTAGRQ---------AnkknlmlELGKIKKTLEKAS 195
                 2222222222.........011112234444444444444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.6   0.00081      0.47      34      83 ..      81     138 ..      77     213 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
      AAA_25  34 elallaGapgtGKttlaldlalava.tGkpwlg.......pvapeqgkVlyvsaEdse 83 
                 +++ll+G  g GKtt a  la++   +Gk++           a+eq k +   +E + 
  CCG92673.1  81 GVILLVGVNGGGKTTTAAKLAYKFKsEGKKVYLaacdtfrAAATEQLKIWADKLELPV 138
                 799******************9987555544333333333233344444433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 1868.59
//
Query:       CCG92674.1  [L=365]
Description: Pyrimidine deaminase and pyrimidine reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-30  106.0   0.0    3.1e-30  105.5   0.0    1.1  1  RibD_C           RibD C-terminal domain
    1.8e-20   72.7   0.0      3e-20   72.0   0.0    1.3  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    3.3e-11   43.1   0.0    5.7e-11   42.3   0.0    1.3  1  MafB19-deam      MafB19-like deaminase


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.0   5.2e-34   3.1e-30       1     171 [.     154     306 ..     154     323 .. 0.92

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 5.2e-34
                 -EEEEEEEEETTSBSSCTTSSGCTSS-HHHHHHHHHHHHTSSEEEEEHHHHHHHT--SS--SSCHSCHHHTT.GSS-EEEEEETTS-S-TTSHHHHSSS CS
      RibD_C   1 pyvilklavSlDGklaaaggeskwitgeearadvhelraeadailvGrgtvladnpsltvrwvkkreaeadaearqpvrvVvdstlrvpldakvltdda 99 
                 p+vi k+a+ +DG ++a  g++kwi+g  ar+++h lr  +d+il+G++t + dnp lt r v+k+ +       qp r +v+ + r+p++  ++td+ 
  CCG92674.1 154 PWVIGKMAMAIDGSFSAGIGDEKWISGLPARTVAHTLRMISDGILIGAQTARHDNPLLTIRHVDKKYK------VQPWRAIVSLSGRLPKELFLFTDS- 245
                 8****************************************************************866......**********************98. PP

                 -EEEEESSCSCHHHHHHCC.ESE-HHHHHHHHHHTT--EEEEEETHHHHHHHHHTTT-SEEEEEEESCE--TT CS
      RibD_C 100 ptlvatteeadkekveklk.vrvdlkelleeLkergirsllveGGatLagsllraglvDelrlyiaPkllGga 171
                              k+++l  vrv l+ +leeL  r + +llveGG t+ +++l +gl+ e+ ++  P+++G+a
  CCG92674.1 246 ------------FKERTLLfVRVPLEMVLEELGSRTVTTLLVEGGKTIFQAFLSKGLIHEVAFFLSPLIIGKA 306
                 ............222233347999***********************************************93 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   4.9e-24     3e-20       4     100 ..       8     107 ..       6     108 .. 0.94

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 4.9e-24
                      HHHHHHHHHHHHHHHH..TTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHHTSSCETTEEEEEEE--BHH......HHHHH CS
  dCMP_cyt_deam_1   4 dekllelalkaakeaq..kcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaaknggsklegatlyvtlePCsm......Cakai 89 
                      d+++++ a k+a   +  + +n++VGavivkng ii++gy++++ g +   HAE+ Ai  a +  g+++ g tlyvtlePC+       C+  i
       CCG92674.1   8 DRYWMQEAFKLALLGEglTSPNPSVGAVIVKNGIIIGKGYHKKA-GAP---HAEIEAIEDAKRH-GYSVSGSTLYVTLEPCTCwgktppCSLRI 96 
                      789**********99999*************************6.665...***********98.8999*************9999******** PP

                      HHHT-SEEEEE CS
  dCMP_cyt_deam_1  90 iqsgikkvvvg 100
                      i+ +i++vv g
       CCG92674.1  97 IEEKISRVVAG 107
                      ********986 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   9.6e-15   5.7e-11      11     104 ..      18     111 ..       7     127 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 9.6e-15
  MafB19-deam  11 laevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepC......dmCagaivqaglkklvygag 102
                  la++++++   +  +gavivk++ +i++g+     ++    HaEi+a++ A  k  +   ++ tlyvtlepC      ++C   i++ ++ ++v g+ 
   CCG92674.1  18 LALLGEGLTSPNPSVGAVIVKNGIIIGKGYH----KKAGAPHAEIEAIEDA--KRHGYSVSGSTLYVTLEPCtcwgktPPCSLRIIEEKISRVVAGSP 109
                  34567777777889*****************....555889**********..5555557************44444447999999999999999987 PP

  MafB19-deam 103 np 104
                  +p
   CCG92674.1 110 DP 111
                  76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2472.86
//
Query:       CCG92675.1  [L=187]
Description: Hypoxanthine-guanine phosphoribosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-22   77.6   0.0    8.6e-22   77.4   0.0    1.0  1  Pribosyltran  Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   4.8e-26   8.6e-22       6     158 ..      20     169 ..      16     170 .. 0.95

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 4.8e-26
                   TT---EEEEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHS..TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSS CS
  Pribosyltran   6 lenpaildavarlaaeileeyngkpdvvvgiargGvpfakiladeL..evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtG 100
                   l+ ++i +++ +l+aei+e y+ +p +++g + g++ f+ +l + L    ++ +++ ++y + +s++ ++g++ +  + ++++ k +l++DDild+G
    CCG92675.1  20 LSEEKIQKRILELSAEIREAYRKRPFMILGLLNGSLFFVADLLKNLplRTEVEFLQLKSYAGTVSTGCIQGLEWI--DKKKFEAKNILVIDDILDSG 114
                   56677888999***********************************7766799*******************999..******************** PP

                   HHHHHHHHHHHCC-BSEEEEEEEEE-HHHHHHHHHH-TTS.....EEEEEEE-SEE-T CS
  Pribosyltran 101 gTllaalelLkekgpeevriavlvdkpateeevdknakrvfslspdnfvavvgfelds 158
                   +Tl a+ e L + g+  v+++vl++k  +e ++   ++++f++    +v+vvg++ld+
    CCG92675.1 115 QTLSAVKEKLYDSGALNVEFCVLLKKLKKEQKPIQPKWVGFEIP---DVFVVGYGLDF 169
                   *****************************************999...*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1385.34
//
Query:       CCG92676.1  [L=193]
Description: Predicted membrane protein (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-10   41.5   8.5    1.3e-10   41.5   8.5    1.8  2  PsiE      Phosphate-starvation-inducible E


Domain annotation for each model (and alignments):
>> PsiE  Phosphate-starvation-inducible E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.3      0.34     6e+03       5       8 ..      56      59 ..      44      69 .. 0.63
   2 !   41.5   8.5   7.4e-15   1.3e-10       4      68 .]      93     158 ..      90     158 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.34
        PsiE  5 LllL 8 
                +llL
  CCG92676.1 56 FLLL 59
                3333 PP

  == domain 2  score: 41.5 bits;  conditional E-value: 7.4e-15
        PsiE   4 iLllLillEllrtivaylkehriavrlvieaaiiavaRklIil.dlkdggyltllglaaailaLgl 68 
                  L l ++lEllr++v+y++ +ri++ +++ea+  +v+R+l++l + ++++++++l +++a+l+L+l
  CCG92676.1  93 TLSLVVILELLRAFVEYFQFDRIRLHVLLEAGAAFVLRELMLLlFDEKISGIHILIWSLAVLILVL 158
                 699************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1354.59
//
Query:       CCG92677.1  [L=527]
Description: Apolipoprotein N-acyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-14   53.2   0.0    4.2e-14   52.5   0.0    1.3  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   2.3e-18   4.2e-14       3     238 ..     245     472 ..     243     482 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 2.3e-18
                   EEEEBB-.....STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBSSSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEECCTTEEEE CS
  CN_hydrolase   3 AvvQlpq.....kaadleanlqklleliaeAarkgadLivlPElfitgykeeahfleaAeaglgetlallaalarkngiavvigliereltngklqa 94 
                   A++Q+++     ++ d ea++    +l+++  ++  dLi++PE          +f+ +       +l+ +++l + +      g +    t+  l  
    CCG92677.1 245 AAIQPNIpqdlnVTIDPEAGFLEEITLSRQSLSYFPDLICWPESPFG-----LDFFSSPK-----LLEPIRKLQQAQPFSFLSGSFKA--TGEEL-- 327
                   899999999999999*******************99*******7554.....57776444.....8999**99999999999999999..*****.. PP

                   EEEEEEEETTSEEEEEEE-SS--E.ECTTSCECCGHHTSCS.........-SS..S-EEEETTEEEEEEEGGGGGSHHHHHHHHHTT-SEEEEBH.G CS
  CN_hydrolase  95 yntavlldldgklvgkyrKlhLfp.geprpptaverelfep.........gdg..ipvfdtpvgkiGaaiCyeigfpellralalkgaeilvnlser 179
                   +n avll+  ++ +  y K++L+p ge+ p   +   l +          g+   i  +d p  ki  +iC e +   ++r++a ++ ++++ ++++
    CCG92677.1 328 FNVAVLLKYPQEELELYAKNRLVPfGEFIPFANIFPFLRKLvpfqvdltpGKTsnIFFLDNPKLKIAPLICFEDTIASYVRKMAVQKPDLMIDITND 424
                   ***********************99999998876444433344477777655422333355555*****************************99** PP

                   CCCTCHHHHHHHHHHHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEE CS
  CN_hydrolase 180 apvpksmgppqwellgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilag 238
                   +++ +s g+  +++ +  r +e+++++++++++g+           S+ id +Gril  
    CCG92677.1 425 GWFKDSSGAFLHMINALFRTVELDIPLLRCTNTGV-----------SVWIDQRGRILNI 472
                   ***********************************...........*********9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 3400.35
//
Query:       CCG92678.1  [L=508]
Description: Peptidyl-prolyl cis-trans isomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-20   73.7   1.7    1.9e-20   73.3   0.1    2.0  2  SurA_N_3      SurA N-terminal domain
    2.6e-17   63.0   0.0    4.7e-17   62.2   0.0    1.4  1  SurA_N_2      SurA N-terminal domain
      4e-12   47.0   7.7    2.2e-10   41.4   2.4    2.6  2  Rotamase_2    PPIC-type PPIASE domain
  ------ inclusion threshold ------
      0.016   16.2   2.1       0.15   13.1   0.0    2.9  2  Rotamase      PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.1   4.1e-24   1.9e-20       1     160 [.       1     158 [.       1     160 [. 0.86
   2 ?   -1.8   0.3      0.52   2.3e+03      58     108 ..     353     401 ..     345     403 .. 0.64

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 4.1e-24
    SurA_N_3   1 MleflrknakswiakillgliilaFvl.wGvgsylsgsgnsvakVngekIsraefqqayrrqleqlrqqlggnldaelldelglrqqvldqli.deall 97 
                 Ml++lr++  sw++ ++l++i ++F+l + + ++++ ++ svak+ g++Is + f+ a +    +++ + g+      +   +  qq+ldq+  ++ l+
  CCG92678.1   1 MLKILRTH--SWLLVVVLAVIGVSFLLfFNIPAMSGLKNPSVAKIAGKSISLETFRLARQASSIEIALSSGN------QPYGENLQQILDQMAwTRLLF 91 
                 9*******..7*************9977********99999**************99998866555554443......333455688999987366778 PP

    SurA_N_3  98 lqeakklglsvsdeevakeiasipaFqedGkFdkerYkqlLaa....ngltpeefeaslredlllqk 160
                 lq+ak+l+  v++eev + i++ p++q++Gk+d++ Y++++++    +g+t+e+f + ++e+l++  
  CCG92678.1  92 LQAAKELHCLVPEEEVVQFIQQLPFLQKEGKYDPAIYQRFVSSflvpQGITEERFLQVMHEELVIGE 158
                 **************************************9877544559**************99865 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.52
    SurA_N_3  58 yrrqleqlrqqlggnldaelldelglrqqvldqlidealllqeakklglsv 108
                  + + e+l+++   ++ a   ++++++++  + l + + ++q a+ +gl +
  CCG92678.1 353 KSIIEEKLKRKK--AFEALFEKSNAIEKELNKALKEGKDIEQVARAQGLVI 401
                 444455555533..6666666667777777777777777888888888765 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   1.1e-20   4.7e-17       2     144 ..       3     131 ..       2     132 .. 0.90

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 1.1e-20
    SurA_N_2   2 ekiReksqgllviiiglallaFilgdlfgvgsylfssssnevaeVnGekIslqefqqaveearqqlqqqlgenfdeseedeaqlreqvldqlvseklle 100
                 + +R++s+ llv++++++ ++F+   +f++ + +++ ++ +va+++G++Isl+ f+ a +  + +++ ++g++    e+ ++ l ++++++l    l+ 
  CCG92678.1   3 KILRTHSW-LLVVVLAVIGVSFL--LFFNIPA-MSGLKNPSVAKIAGKSISLETFRLARQASSIEIALSSGNQ-PYGENLQQILDQMAWTRL----LFL 92 
                 66899999.999999********..5666555.4667*******************************99988.7778888999*****998....69* PP

    SurA_N_2 101 qeaeklGltvsdeelqdaiqgnpaikqsFqpetGkFdkeklkqf 144
                 q+a++l+  v +ee++++iq+ p     +q ++Gk+d + +++f
  CCG92678.1  93 QAAKELHCLVPEEEVVQFIQQLPF----LQ-KEGKYDPAIYQRF 131
                 ***********************9....99.***********98 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   2.4   4.8e-14   2.2e-10       1     120 [.     203     353 ..     203     354 .. 0.81
   2 !    8.1   0.2     0.001       4.7      23     118 ..     364     462 ..     357     465 .. 0.65

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 4.8e-14
  Rotamase_2   1 vteaevkayYeankd..efskpegktlelavvk.........dqvaaeaalalakag..............aekdfaalakgnskkaadlgifesa... 71 
                 v ++e+++ Y+++ +  ++ + e +   +++++          ++ +ea+++l+++               + ++ +++a++++ +   +++f+ +   
  CCG92678.1 203 VKPEEIEKEYKSHSKdpDYYTAEKRKAGYVFFPfppewqslkGKELDEAKRKLLEKAedfsidtvrlmessQTAEIEKIAREKNLSYRLTPFFSLDhpp 301
                 568999999999877668888888887877777766665555777777778887777889999999998876688899999999999999988888555 PP

  Rotamase_2  72 snlpe.....elakaafalkpg.evsgpvetdngyyivkvtevkpakvppfeevk 120
                 +   e     ++aka+f+l++   vs+p+et++gyy++ + +v+++  +pfe+vk
  CCG92678.1 302 T---EveepeKFAKAVFELSQEkPVSDPIETSKGYYVIVLLGVEKGVLQPFEQVK 353
                 1...344455*********88779******************************9 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.001
  Rotamase_2  23 ktlelavvkdqvaaeaalalakagaekdfaalakgnskkaadlgifesasnlpeelakaa......falkpgevsgpvetdngyyivkvtevkpakvpp 115
                 k +e ++ k+ +  +   +++k+g  kd +++a++++  +++++ f   + +p++l++aa      + l+p ++s  ++t++g ++++++++  ++ p 
  CCG92678.1 364 KAFEALFEKSNAIEKELNKALKEG--KDIEQVARAQGLVIEKPPSFVPVD-PPKDLNAAAeigfacQLLEPSRLSRFLPTPEGGVFIYLQNRFAPALPN 459
                 445555555555555555555555..688888888888888888555443.455555555333222699**************9999999987666665 PP

  Rotamase_2 116 fee 118
                   e
  CCG92678.1 460 EME 462
                 555 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.3e-05      0.15      63      94 ..     305     337 ..     244     339 .. 0.69
   2 ?    0.8   0.8      0.22   9.9e+02      19      42 ..     374     396 ..     350     398 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.3e-05
                 TS-CCCHHHHCCS-C.T-B-S-EEETTEEEEEE CS
    Rotamase  63 qlppefekaafslkk.GeisepvetkfGfhiik 94 
                 + p++f+ka+f+l++   +s+p+et+ G+ +i 
  CCG92678.1 305 EEPEKFAKAVFELSQeKPVSDPIETSKGYYVIV 337
                 56788*********8799***********9985 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.22
                 HHHHHHHHCCTCCCHHHHHHHHCC CS
    Rotamase  19 kakaeeileqlksgedtFeelArk 42 
                 +a  +e+ + lk+g+d  e++Ar 
  CCG92678.1 374 NAIEKELNKALKEGKD-IEQVARA 396
                 4555778888888888.9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1061  (0.0591779); expected 358.6 (0.02)
Passed bias filter:                      777  (0.0433376); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 3509.92
//
Query:       CCG92679.1  [L=369]
Description: Predicted permease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-54  184.8   7.0    2.5e-54  184.5   7.0    1.0  1  LptF_LptG  Lipopolysaccharide export system permease LptF/Lpt


Domain annotation for each model (and alignments):
>> LptF_LptG  Lipopolysaccharide export system permease LptF/LptG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.5   7.0   1.4e-58   2.5e-54       1     352 [.       7     357 ..       7     359 .. 0.96

  Alignments for each domain:
  == domain 1  score: 184.5 bits;  conditional E-value: 1.4e-58
   LptF_LptG   1 rYilreflkpfllvllvllfllllqdllryldllvgkglpvgdllelilynlpyilelalPlavLlavlltfgrLaedsEltalrsaGislgrllrpil 99 
                 rY+++ fl p+l++ l++  l+++ dl+  l+++++++++ + ++ +++  lp ++ +++P a L+a+l+++ +L+++ E++a++++G+ l +++ p+l
  CCG92679.1   7 RYLFKGFLYPLLFTILAFCSLVIIADLFGSLEDFIQNKATTRQIFNYYVAYLPAVVIMIVPPASLFASLYFLMQLHRHGEFVAMQACGVPLQKIFAPFL 105
                 9************************************************************************************************** PP

   LptF_LptG 100 ilalllsvlsfllnnyvvPwankkaesllseirqkspsllikpgvfikdgdg.yiiyvgsmddeggelqdv.tiydltegkgltsiitAksgvlvksad 196
                 +++++++v++++l++     +++k+++++++i+ ++ s     g+ ++++ + +i y+++ d  +++ +dv ++ ++++gk+l++ + A ++ ++    
  CCG92679.1 106 MIGFIMTVFLIALQLGPGGNSQAKRDQIMEDIKGNKGSVHAVRGIIYREKAEkRIWYFRQLDFVKNQGEDVeVVVQEDSGKDLKK-YFARTAIWK---- 199
                 ***************************************99999999999888999***99999999999976777767788885.9********.... PP

   LptF_LptG 197 elqlrLfngeiyevgddekkysretferyr.idinldpadlsteeespdelslselkekikalrsegle.vrryraelhkrlalplaclvfaliaaplg 293
                 + +++L++++++  + +++  + + fe+   i+ + +p +   +e++p+ l+ sel++ i+  ++ ++     y+++++  +a pl++lv++li+++ g
  CCG92679.1 200 DGHWILNDVNRIDYDSSSNFLQSTYFESLSlISWTTPPRQMVALEKKPRDLNASELWKLIDNPGNIQKTlLAPYQVQFYTLIAEPLSVLVLLLIGLAEG 298
                 ****************99999999999987345569**************************99999999***************************** PP

   LptF_LptG 294 lvkrrggrglrlliaillfvlyyvllslgkalaengvlppilaawlpnilflllglfll 352
                  ++  +  +++++ a+++++++y+++ +++ l+++  +pp++a+ +p+++f+ ++lf++
  CCG92679.1 299 GRLSSRHPAAGVFNALFILIAFYLIFHFFQILGQGMRIPPAIAIFTPLCVFATISLFRI 357
                 *******************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2327.34
//
Query:       CCG92680.1  [L=196]
Description: Phosphoheptose isomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-24   84.7   0.0    1.7e-23   83.2   0.0    1.7  1  SIS_2           SIS domain
      6e-07   29.4   0.0    1.5e-06   28.1   0.0    1.7  2  SIS             SIS domain
  ------ inclusion threshold ------
      0.027   14.8   0.8       0.11   12.9   0.0    2.3  3  GHMP_kinases_C  GHMP kinases C terminal
       0.08   12.9   0.0        3.2    7.7   0.0    2.2  2  ADH_zinc_N      Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   3.7e-27   1.7e-23      10     138 .]      23     150 ..       2     150 .. 0.91

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 3.7e-27
                 HHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST..THHHHHTT-TTHHHHHHHHTT-..-TT-E CS
       SIS_2  10 lerivetqaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaragglaeferialpalalhtdaeatkssalerdegyakqilrlvrl..kpgDv 106
                  +++  +  + + + ++ + ++ +++gk+l  G+G+Saa+a+++a ++ g +  +r+ l a+ l +d    + s++++d g+ ++++r+ ++   p+D+
  CCG92680.1  23 ASNM-VASVDILSRIVDKLLECFKKNGKLLCAGNGGSAAQAMHFAEELLGKFRDKRPPLAAISLASDG--PTLSCIANDFGFEEIFSRQIEAlgYPEDL 118
                 4444.556677889999**************************************************9..999999999999999999977777***** PP

                 EEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2 107 LlviSnsGnnavvveaaeaakergmkviAlts 138
                 L+ +S+sGn+ ++++aa+ ak rgm  iA+++
  CCG92680.1 119 LILFSTSGNSRNLIKAAQSAKHRGMFSIAFLG 150
                 *************************9999875 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       0.8   3.6e+03       5      24 ..      47      66 ..      44      71 .. 0.75
   2 !   28.1   0.0   3.4e-10   1.5e-06      53     110 ..     115     172 ..      94     191 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.8
                SSEEEEEESHHHHHHHHHHH CS
         SIS  5 akriyvlGaGtsyaiakela 24
                  +++  G G s+a a+ +a
  CCG92680.1 47 NGKLLCAGNGGSAAQAMHFA 66
                44788889999999888776 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 3.4e-10
                 TTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEEEECHC CS
         SIS  53 eddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlalyinaepet 110
                 ++dl+il+s+sg++++l++aa+ ak rg+  ia+ ++ g  l+r+ d   ++++e+ +
  CCG92680.1 115 PEDLLILFSTSGNSRNLIKAAQSAKHRGMFSIAFLGKGGGELCRQVDMSWIVPSENPS 172
                 89********************************************999888888776 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.5e-05      0.11       8      61 ..      14      58 ..       8      61 .. 0.75
   2 ?   -1.4   0.0       0.7   3.1e+03      51      68 ..      81      98 ..      78     114 .. 0.74
   3 ?   -1.6   0.0      0.82   3.7e+03      34      47 ..     126     139 ..     102     155 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
  GHMP_kinases_C  8 gdlellgellnlsqrselkavvgilppeleellealselGalgaklsGaGgGpt 61
                    + le l++l+ ++ +      v+il++++++lle+++++G    kl  aG G++
      CCG92680.1 14 RELEQLRQLASNMVA-----SVDILSRIVDKLLECFKKNG----KLLCAGNGGS 58
                    455667777775545.....9*******************....6666665665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.7
  GHMP_kinases_C 51 aklsGaGgGptvfalfkd 68
                    a +s a+ Gpt+ +++ d
      CCG92680.1 81 AAISLASDGPTLSCIAND 98
                    678888999999888843 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.82
  GHMP_kinases_C  34 peleellealselG 47 
                      + ++l++a++++ 
      CCG92680.1 126 GNSRNLIKAAQSAK 139
                     45566777775554 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.018        81      70      94 ..      35      59 ..       7      74 .. 0.77
   2 ?    7.7   0.0   0.00071       3.2      46      88 ..     105     147 ..      93     179 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.018
                HHHHHHHHCEEEEEEEEECSCTSSE CS
  ADH_zinc_N 70 atleaalkllkpgGrlvvvGggkge 94
                + ++  l++ k++G+l + G g+  
  CCG92680.1 35 RIVDKLLECFKKNGKLLCAGNGGSA 59
                678999*************984433 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00071
                 HHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEEC CS
  ADH_zinc_N  46 lverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvv 88 
                 ++ +i++l  +e++ + f ++G+ + l  a +++k++G++ + 
  CCG92680.1 105 FSRQIEALGYPEDLLILFSTSGNSRNLIKAAQSAKHRGMFSIA 147
                 556899999999**************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1333.76
//
Query:       CCG92681.1  [L=148]
Description: Biotin carboxyl carrier protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-22   78.3   0.4    4.9e-22   77.6   0.4    1.4  1  Biotin_lipoyl  Biotin-requiring enzyme
     0.0013   18.6   1.2     0.0024   17.7   0.4    1.8  2  GCV_H          Glycine cleavage H-protein
     0.0091   16.1   0.7       0.34   11.1   0.1    2.2  2  TAFH           NHR1 homology to TAF


Domain annotation for each model (and alignments):
>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.4   8.2e-26   4.9e-22       2      72 ..      72     144 ..      71     145 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 8.2e-26
                    EEEESSSEEEEEE...ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl   2 eiksPmiGesveeg..vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 72 
                    ei+sPm+G +++++   ++ +v+vG++V+++ v++++eamK+++ei+a++ G+++e+l+++G+ v+ +++l+k
     CCG92681.1  72 EIRSPMVGIFYRSPspNAQPYVEVGQEVTEDTVVCIIEAMKVMNEIKAEVHGIITEVLAENGKPVDFNKPLFK 144
                    8************9*********************************************************98 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.31   1.8e+03      37      46 ..      22      31 ..       7      69 .. 0.65
   2 !   17.7   0.4   4.1e-07    0.0024      40      74 ..      94     128 ..      90     140 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.31
                E---TT-EE- CS
       GCV_H 37 elpevgtkvk 46
                e+ e++tk+ 
  CCG92681.1 22 EIEEENTKLR 31
                3334443333 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 4.1e-07
                 -TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE CS
       GCV_H  40 evgtkvkkgeslaavEsvKaasevyapvsGevvev 74 
                 evg++v ++  + ++E+ K   e+ a+v+G ++ev
  CCG92681.1  94 EVGQEVTEDTVVCIIEAMKVMNEIKAEVHGIITEV 128
                 89*******************************98 PP

>> TAFH  NHR1 homology to TAF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   5.6e-05      0.34      26      61 ..       5      43 ..       3      45 .. 0.80
   2 ?    3.4   0.0     0.014        84      18      49 ..     112     143 ..     107     146 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.6e-05
        TAFH 26 nvkeLvqelldgk...iepeeftsklqeelnsspqPylv 61
                ++ eL++ +++++   ie+ee ++kl     ++pqP lv
  CCG92681.1  5 KIAELIELMVKNNlseIEIEEENTKLRLRKDFPPQPTLV 43
                6677777777754222899*******************9 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.014
        TAFH  18 kqspevaenvkeLvqelldgkiepeeftsklq 49 
                 k ++e++++v  ++ e+l  + +p +f++ l 
  CCG92681.1 112 KVMNEIKAEVHGIITEVLAENGKPVDFNKPLF 143
                 56789**********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1211.38
//
Query:       CCG92682.1  [L=65]
Description: hypothetical protein MFUM_720049 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       149  (0.00831056); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 477.98
//
Query:       CCG92683.1  [L=286]
Description: ATPase involved in DNA replication HolB [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-27   95.6   0.5    6.8e-25   87.7   0.0    2.6  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
  ------ inclusion threshold ------
      0.031   14.7   0.0      0.068   13.6   0.0    1.5  1  AAA              ATPase family associated with various cellul


Domain annotation for each model (and alignments):
>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   7.5e-29   6.8e-25       5     158 ..       8     147 ..       5     151 .. 0.88
   2 ?   -2.1   0.1      0.33     3e+03     123     123 ..     225     225 ..     184     266 .. 0.60

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 7.5e-29
  DNA_pol3_delta2   5 alkilskalksgrlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqirelieelsrk 98 
                       +++++k + ++r+a ayLf+G++ +   ++ ++l+++ll  +                   khpD+ +i+++ k + i+++qi+e+ ++l+ k
       CCG92683.1   8 CIQLFKKGILNQRIASAYLFSGSDASLLLNVGMALSRELLEGD-----------------PLKHPDFYFIRPQTKLKRISVQQIKEVCQQLYLK 84 
                      688999999999**********887776666666666665443.................369******************************* PP

  DNA_pol3_delta2  99 preskkkiiiiedaekmt...ksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelk 158
                      +++ ++k+++i +ae m     +AaNa+LktlEEP+++++++L+++++ ++ +ti SRc  ++
       CCG92683.1  85 AYKESRKVCLILEAESMClggGEAANAFLKTLEEPPSHTTILLTSTRPLSIFPTILSRCIRVS 147
                      *****************633369************************************9886 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.33
  DNA_pol3_delta2 123 l 123
                      +
       CCG92683.1 225 F 225
                      2 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.6e-06     0.068      44     126 ..      72     145 ..      53     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.6e-06
                 HHHHHHHHHHHHTS...TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSE CS
         AAA  44 kkirelfkeakeka...kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdr 126
                 ++i+e+ +++  ka   + ++ +i E+++++            +++n++l+ l++  +   +++++++++rp ++ p +l +R+ r
  CCG92683.1  72 QQIKEVCQQLYLKAykeSRKVCLILEAESMCLGG--------GEAANAFLKTLEEPPS---HTTILLTSTRPLSIFPTIL-SRCIR 145
                 5666666665444444335999999*****9999........899***********99...489****************.99855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1169  (0.0652016); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2048.94
//
Query:       CCG92684.1  [L=213]
Description: Thymidylate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-42  143.2   0.0    7.9e-42  143.0   0.0    1.0  1  Thymidylate_kin  Thymidylate kinase
    4.3e-06   27.1   0.0    4.8e-06   26.9   0.0    1.2  1  AAA_28           AAA domain
    0.00014   22.1   0.0    0.00031   21.0   0.0    1.7  1  AAA_22           AAA domain
    0.00045   20.6   0.3     0.0024   18.3   0.3    1.9  1  AAA_16           AAA ATPase domain
      0.002   18.0   0.0        1.2    9.0   0.0    2.1  2  dNK              Deoxynucleoside kinase
     0.0066   16.9   0.1      0.092   13.2   0.1    2.2  1  AAA_17           AAA domain
  ------ inclusion threshold ------
      0.017   15.7   0.0      0.031   14.8   0.0    1.7  1  AAA_18           AAA domain
       0.02   14.9   0.0       0.03   14.2   0.0    1.4  1  Rad17            Rad17 P-loop domain
      0.061   12.3   0.0       0.15   11.0   0.0    1.6  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.079   12.2   0.0       0.16   11.3   0.0    1.4  1  Zeta_toxin       Zeta toxin
       0.09   11.7   0.0       0.15   11.0   0.0    1.3  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
       0.09   12.5   0.0       0.13   11.9   0.0    1.3  1  AAA_30           AAA domain
      0.095   13.1   0.0       0.26   11.7   0.0    2.0  1  AAA              ATPase family associated with various cellul


Domain annotation for each model (and alignments):
>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.0   0.0   5.8e-45   7.9e-42       1     182 [.      11     200 ..      11     203 .. 0.92

  Alignments for each domain:
  == domain 1  score: 143.0 bits;  conditional E-value: 5.8e-45
                      EEESTTSSHHHHHHHHHHHHHHTTE.EEEESSSTTSHHHHHHHHHHH.TCS---HHHHHHHHHHHHHHTTHHHHHHHHHTT-EEEEES-HHHHH CS
  Thymidylate_kin   1 iEGlDGaGKttqaellkerlkeegikvvltrepggteiGekirelll.keeeleeqteallfaadriehleekikpalkqgktvivdRylfSsl 93 
                      +EG +G GKttq++llk+rl+e+g kv++ repg+t++Ge +r+ll+     + +++e++lf a+r+e + + i+p+++q+++v  dR+ +S+l
       CCG92684.1  11 FEGSEGCGKTTQIRLLKKRLEERGQKVIRVREPGSTPLGERLRRLLKhSDIGFCSLAELFLFEASRAELIKKIIEPEIAQNTWVLADRFTDSTL 104
                      8***********************99*********************6667777778************************************* PP

                      HHHHTTTTTTCHHHHHHGGGTTS..E-SEEEEEESSHHHHHTSCCTTSS....TTTSHHHHHHHHHHHHHHHHHHHH.TTSTEEEEETTS-HHH CS
  Thymidylate_kin  94 aYqgakegvdldlvlslnedvll..kPdltflldvdpevalkRlakrde....ldeeeeeqldflrkvrerylelak.ederiliidasksiee 180
                      +Yqg+ +g+ l+ + +ln+ ++   kP lt+lld++++ a  R++krd      d+ ++  +++l +vr+ ylela  e+er+++++a+ s ee
       CCG92684.1 105 VYQGIVRGIPLKTIEELNQLATAgiKPTLTILLDIPVKSAQFRIKKRDGkksgIDKLQADFESSLDTVRKAYLELASrEPERFYVLEATGSPEE 198
                      *******************999899**********************99544434455555667889************************999 PP

                      HH CS
  Thymidylate_kin 181 vh 182
                      + 
       CCG92684.1 199 IA 200
                      86 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   3.5e-09   4.8e-06       2      91 ..       9     109 ..       8     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.5e-09
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv..pEaareileeklakgedalpwvedllafaervleeqleeeaaa.......aankvlfcDrglldtla 87 
                 i + G e++GKTt ++ L++r    g +v+  +E++ + l e+l++  ++++    ++ +ae++l e+ ++e          a+n +++ Dr +  tl+
  CCG92684.1   9 ISFEGSEGCGKTTQIRLLKKRleerGQKVIrvREPGSTPLGERLRRLLKHSDI--GFCSLAELFLFEASRAELIKkiiepeiAQNTWVLADRFTDSTLV 105
                 6789***********99985555558888888*****************9997..5888888888777777733345666789***********99999 PP

      AAA_28  88 Yara 91 
                 Y   
  CCG92684.1 106 YQGI 109
                 9744 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.3e-07   0.00031       4      62 ..       5      57 ..       1      91 [. 0.88

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.3e-07
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellr 62
                +++++   G  G+GKTt +r l+++l+e+      + +v++v  p+st + + lr+ll+
  CCG92684.1  5 KRRFISFEGSEGCGKTTQIRLLKKRLEER------GQKVIRVREPGSTPLGERLRRLLK 57
                68899999******************887......*************88888888876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.3   1.8e-06    0.0024      25     107 ..       7     147 ..       2     193 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.8e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala................ 106
                 + + + G  G+GK++ +r l+++le++g  ++r +   +   +p+   l ++l +++ +     ++   ++ea r++l + +                 
  CCG92684.1   7 RFISFEGSEGCGKTTQIRLLKKRLEERGQKVIRVREPGS---TPLGErLRRLL-KHSDIGFCSLAELF-LFEASRAELIKKIIepeiaqntwvladrft 100
                 5677889********************999999999999...88866455555.65776666666444.333333333333332444455555555555 PP

      AAA_16 107 ..............................................a 107
                                                                
  CCG92684.1 101 dstlvyqgivrgiplktieelnqlatagikptltilldipvksaqfR 147
                 55556666666666666665555555555555555555555555551 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00085       1.2       1      23 [.       9      31 ..       9      45 .. 0.90
   2 !    7.3   0.0    0.0027       3.8      95     147 ..     104     155 ..      66     193 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00085
                EEEEESTTSSHHHHHHHHHCCST CS
         dNK  1 ivveGnIgaGKstlvklLskklg 23
                i+ eG  g+GK+t + lL+k+l+
  CCG92684.1  9 ISFEGSEGCGKTTQIRLLKKRLE 31
                789*****************996 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0027
                 HHHTTSS-HHHHHHHHHHHHHHHHHCCH-SEEEEEE--HHHHHHHHHHCTTCC CS
         dNK  95 laekgtlseeelkiykelldnlleelakpdlliYLkasletclerikkRgree 147
                 l+ +g++    lk+ +el + ++  ++ p l i L++++++   rikkR+ ++
  CCG92684.1 104 LVYQGIVRGIPLKTIEELNQLATAGIK-PTLTILLDIPVKSAQFRIKKRDGKK 155
                 556677777888999999999998888.*********************9776 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   6.6e-05     0.092       2     127 ..      13     156 ..      13     164 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.6e-05
                 E-TTSSHHHHHHHHHHHH...TEEEEEH........HHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHH.HSSE.EEEEE-S.EEEETT CS
      AAA_17   2 GgPGsGKgtqceklveky...gfthlsa........Gdllreeakrgglakardemrklpleekkelqkeaaekiaeea.kkkg.vlvdghp.rikeqa 86 
                 G  G+GK+tq++ l++++   g +++          G+ lr   k++      +  + ++l   ++ ++e+++ki e + ++++ vl d +  ++   +
  CCG92684.1  13 GSEGCGKTTQIRLLKKRLeerGQKVIRVrepgstplGERLRRLLKHSDI----GFCSLAELFLFEASRAELIKKIIEPEiAQNTwVLADRFTdSTLVYQ 107
                 5579*******99998766665555543333222335555555555543....2222334444455566666666666643344245555433344558 PP

                 EEEESSHHHHHHHH..........SEEEEEE--HHHHHHHHHHHTTST- CS
      AAA_17  87 gfldglpkevleelk........pdaiilleadpeeilerrlkdrtrgr 127
                 g++ g+p +++eel+        p++ ill+++ +    r +k+++++ 
  CCG92684.1 108 GIVRGIPLKTIEELNqlatagikPTLTILLDIPVKSAQFRIKKRDGKKS 156
                 88888888887655555555555************99999999954433 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.3e-05     0.031       3      49 ..      11      75 ..       9     187 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.3e-05
      AAA_18  3 ltGtpGvGKttlakeLskrl.gf...............gvnlrdvakenglllevdpe..aldes 49
                  G  G+GKtt  + L+krl +                g++lr ++k++++ ++  +e   ++ s
  CCG92684.1 11 FEGSEGCGKTTQIRLLKKRLeERgqkvirvrepgstplGERLRRLLKHSDIGFCSLAElfLFEAS 75
                57889**************9666889999999999999999999999999999888885433333 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.2e-05      0.03      41      75 ..       2      36 ..       1      83 [. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-05
       Rad17 41 esrkkriLLisGPsGCgkstvvkvLskelgiklre 75
                es k+r +   G  GCgk+t ++ L k l  + ++
  CCG92684.1  2 ESMKRRFISFEGSEGCGKTTQIRLLKKRLEERGQK 36
                77889999999****************88655444 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.15      31      70 ..       8      46 ..       2      60 .. 0.82
   2 ?   -2.3   0.0       1.3   1.7e+03     214     240 ..     154     180 ..     147     206 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
                EEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE----- CS
        MeaB 31 vvGltGvPGaGkstlvealglelrrrGkrvavlavDPssp 70
                 + + G+ G Gk t +  l  +l +rG++v  +  +P+s+
  CCG92684.1  8 FISFEGSEGCGKTTQIRLLKKRLEERGQKVIRV-REPGST 46
                57789************************9433.356555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.3
                 CTBSHHHHHHHHHHHHHHHHHTTHHHH CS
        MeaB 214 egeGidelvdaieehrevlkktGllek 240
                 ++ Gid+l +  e+  ++++k+ l  +
  CCG92684.1 154 KKSGIDKLQADFESSLDTVRKAYLELA 180
                 567888888888888888877754433 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00011      0.16      23      49 ..      13      40 ..       4      43 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
  Zeta_toxin 23 GqpGAGKselaellkdele.rqgnvvrl 49
                G+ G+GK++ ++llk++le r+++v+r+
  CCG92684.1 13 GSEGCGKTTQIRLLKKRLEeRGQKVIRV 40
                99****************9777788877 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.15      16      47 ..       7      38 ..       2      45 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
  TrwB_AAD_bind 16 qhilivGttGsGKtqalekllrairargdrai 47
                   + i + G+ G GKt++++ l + +++rg+++i
     CCG92684.1  7 RFISFEGSEGCGKTTQIRLLKKRLEERGQKVI 38
                   557789***********************998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.5e-05      0.13      18      51 ..       6      39 ..       2      85 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.5e-05
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrvig 51
                +r+   +G  G GKtt ++ l++ +e++g++vi 
  CCG92684.1  6 RRFISFEGSEGCGKTTQIRLLKKRLEERGQKVIR 39
                5677789**********************99984 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00019      0.26       3      33 ..      11      44 ..       9     213 .] 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
                EESSTTSSHHHHHHHHHHHH...THEEEEEETTT CS
         AAA  3 lyGppGtGKTllakavakel...gvefleisgse 33
                + G  G+GKT+ ++ + k l   g++++++  + 
  CCG92684.1 11 FEGSEGCGKTTQIRLLKKRLeerGQKVIRVREPG 44
                6799*************99944446666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1612.75
//
Query:       CCG92685.1  [L=468]
Description: Cysteinyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.1e-112  374.4   0.1   5.4e-112  374.0   0.1    1.1  1  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
    1.2e-13   50.6   0.5    5.8e-07   28.6   0.0    2.2  2  tRNA-synt_1g  tRNA synthetases class I (M)
    3.7e-06   27.3   0.0    1.2e-05   25.7   0.0    1.8  2  DALR_2        DALR domain
    3.6e-05   22.9   0.0       0.13   11.2   0.0    2.2  2  tRNA-synt_1f  tRNA synthetases class I (K)
     0.0064   14.8   0.0      0.012   13.9   0.0    1.4  1  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)


Domain annotation for each model (and alignments):
>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.0   0.1  1.5e-115  5.4e-112       3     298 ..      24     324 ..      22     327 .. 0.95

  Alignments for each domain:
  == domain 1  score: 374.0 bits;  conditional E-value: 1.5e-115
                   --SBTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SB-- CS
  tRNA-synt_1e   3 kpleekkvtlYvCGptvydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvkelaekfieefkkdleaLnvlkptlep 99 
                   +p++  +vt+Y CGptvy+ +h+G+ R+++++D+lrr l+ +gY+v +  n tDidDk i+ +r++++s++e ++k+i++f++d+++Ln+lkp+++p
    CCG92685.1  24 EPINPPHVTMYACGPTVYNLAHIGNFRTFLCVDLLRRALELFGYKVIHTMNYTDIDDKTIAASRAAGLSLAEYTQKYIDAFEQDMQTLNMLKPHFQP 120
                   6788899****************************************************************************************** PP

                   BGGGGHHHHHHHHHHHHHTTSEEE-TTS-EEE-GGG-TTTTTTTT--HHHHHHT----S-.-S-SSTT-EEEEEE--TTS..--B--TTSSEEE-SS CS
  tRNA-synt_1e 100 rvsekvdeiielvekliekgyaYavsdgdvyfdvskkeeYgklskqnleelelgaegevs.eekkdkkDfaLWkaskege..pswdsPwgkGRPGWh 193
                   +++e+++++ie++ +li+k++aY  +dg vyf   ++++Ygkls+ ++++l+ g ++ +    k++  DfaLWka+k+++  + w sPw  GRPGWh
    CCG92685.1 121 KATEHIEKMIEFIRQLIDKNHAYIGEDGSVYFRIASFPDYGKLSHLEKDKLKPGSHILADeYIKEHYGDFALWKAKKPEDgdVGWISPWEIGRPGWH 217
                   *****************************************************99987763679999**********876559************** PP

                   HHHHHHHHHHH-SSEEEEEEEGGGTTTHHHHHHHHHHHHSSS--EEEEEEE--EEETTBE--TTTT---BHHHHHTT.S-HHHHHHHHHS.S-TTS- CS
  tRNA-synt_1e 194 ieCsvmaskllgseidihsGGiDLafPhhenelaqseaafdkqlvkyflhnghlkiegekmsksLknfitikdvlkk.fdprqlRlllls.ahyrsq 288
                   ieCs+m+  +lg+eidih+GG+DL+fPhhene+aqse+++++++v++++h  h+ +egekmsksL+n+ ti+d+l++ f+ r+lR+ ll+  hyr++
    CCG92685.1 218 IECSTMSICYLGNEIDIHCGGVDLIFPHHENEIAQSESVTGQNFVRHWFHVAHVLVEGEKMSKSLGNIYTIRDILERgFNERTLRYHLLTaSHYRQT 314
                   ***************************************************************************8669*******887527***** PP

                   EEE-HHHHHH CS
  tRNA-synt_1e 289 ldfkeellee 298
                   l+f+ + +e+
    CCG92685.1 315 LNFTWQGMEA 324
                   ***9887776 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2   5.9e-08   0.00021      12     122 ..      42     151 ..      33     156 .. 0.89
   2 !   28.6   0.0   1.6e-10   5.8e-07     309     371 ..     259     322 ..     233     337 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.9e-08
                   S---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHHH CS
  tRNA-synt_1g  12 gklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkygrttseehkelvqeifkklk 108
                   +  H+G+ ++ +  D + R   l g++v++         ++  + +++g++ +e+++k+ +++++++++ln+   +++  + +eh e + e++++l 
    CCG92685.1  42 NLAHIGNFRTFLCVDLLRRALELFGYKVIHTMNYTDIDDKTIAASRAAGLSLAEYTQKYIDAFEQDMQTLNMLKPHFQP-KATEHIEKMIEFIRQLI 137
                   668**************************99887777888888999******************************986.5667888888999***9 PP

                   HTT-EEEEEEEEEE CS
  tRNA-synt_1g 109 ekgliyekeieqly 122
                   +k++ y +e   +y
    CCG92685.1 138 DKNHAYIGEDGSVY 151
                   99999988877766 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.6e-10
                   ----S-EEEE--EEE--------------HHHHHHH.H-HHHHHHHHHHHS-TTS-EEE-HHHH CS
  tRNA-synt_1g 309 lklpkkvvaheyltvegkKlSkSrgvvvkakealer.ldadllRYylaaeapekkDldfswedf 371
                    +++++ +   ++ veg+K+SkS g++ +++++ler ++  +lRY l++++   + l+f+w+ +
    CCG92685.1 259 QNFVRHWFHVAHVLVEGEKMSKSLGNIYTIRDILERgFNERTLRYHLLTASHYRQTLNFTWQGM 322
                   556667777889*************************************************976 PP

>> DALR_2  DALR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   3.3e-09   1.2e-05       2      31 ..     362     392 ..     361     416 .. 0.77
   2 ?   -3.3   0.0       3.8   1.4e+04      26      49 ..     433     453 ..     425     460 .. 0.57

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.3e-09
                 HHHHHTBT--HHHHHHHHHHHHHHHHH.HHH CS
      DALR_2   2 FeeaMdDDFNTaeAiavlFelakeiNr.alk 31 
                 F ea+ DD+N  eAi++lF+ +++ Nr   k
  CCG92685.1 362 FVEALADDLNITEAIGHLFDWIRHTNRmMDK 392
                 99*************************4333 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.8
                 HHHHHHTT-HHHHHHHHHHHHHHH CS
      DALR_2  26 iNralkeedkaaasalkallrela 49 
                 +++   ++d a+ ++ +++l++++
  CCG92685.1 433 ARK---NKDWATSDRIRQQLQQMG 453
                 443...444445555555666554 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00011      0.39      27      72 ..      34      79 ..      12     131 .. 0.87
   2 !   11.2   0.0   3.5e-05      0.13     275     311 ..     272     308 ..     246     357 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00011
  tRNA-synt_1f 27 vesGispSGliHiGnlrevltadlvaralrkrgeevrlilisDdmD 72
                   + G ++  l HiGn+r  l +dl++ral+  g +v + +   d+D
    CCG92685.1 34 YACGPTVYNLAHIGNFRTFLCVDLLRRALELFGYKVIHTMNYTDID 79
                  56777888899********************999988888777777 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3.5e-05
  tRNA-synt_1f 275 llkggekmssSkGnvltledwleva.epevlrflilrr 311
                   l+ +gekms+S Gn+ t++d+le + ++ +lr+ +l +
    CCG92685.1 272 LV-EGEKMSKSLGNIYTIRDILERGfNERTLRYHLLTA 308
                   33.456****************9862566899977663 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.4e-06     0.012     520     600 ..     235     316 ..     229     318 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.4e-06
  tRNA-synt_1 520 lleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslgNvidpldvikk.ygadalRltli.lsdvgrdin 600
                     G+D i+   ++ i +s  +tg++  ++   h   +  eG KmSKslgN+    d++++      lR+ l+  s++ + +n
   CCG92685.1 235 HCGGVDLIFPHHENEIAQSESVTGQNFVRHW-FHVAHVLVEGEKMSKSLGNIYTIRDILERgFNERTLRYHLLtASHYRQTLN 316
                  5567777777777777777777777644444.344444468*****************9872455689**9996666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 2887.43
//
Query:       CCG92686.1  [L=473]
Description: Pyruvate/2-oxoglutarate dehydrogenase complex,dihydrolipoamide dehydrogenase (E3) component or related enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-52  177.9   0.0    3.3e-52  177.6   0.0    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    7.5e-23   80.9   0.1    4.4e-18   65.6   0.0    2.6  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    1.5e-17   63.9   0.0    4.5e-17   62.3   0.0    1.8  1  Pyr_redox_dim   Pyridine nucleotide-disulphide oxidoreductase
    5.9e-13   48.7   3.5    2.5e-05   23.5   4.5    4.0  3  GIDA            Glucose inhibited division protein A
    7.5e-12   45.1   0.1    3.1e-11   43.1   0.1    1.8  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    3.3e-09   36.6   0.0      1e-06   28.4   0.0    2.4  2  FAD_oxidored    FAD dependent oxidoreductase
    1.1e-08   35.1   2.9    1.4e-05   25.2   3.0    2.4  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    4.6e-07   29.9   0.7      0.018   14.9   1.1    2.8  3  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      7e-06   25.4   7.0      0.002   17.3   5.5    2.3  2  FAD_binding_2   FAD binding domain
    2.2e-05   23.9   0.3       0.19   11.0   1.1    2.4  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    3.6e-05   22.7   3.3    0.00018   20.4   3.1    2.2  2  HI0933_like     HI0933-like protein
    3.9e-05   23.1   0.1     0.0099   15.2   0.6    2.4  2  FAD_binding_3   FAD binding domain
    4.2e-05   22.9   0.2    0.00015   21.1   0.3    1.8  2  Thi4            Thi4 family
    0.00069   20.1   0.0       0.78   10.2   0.0    2.7  2  XdhC_C          XdhC Rossmann domain
    0.00073   18.7   1.0      0.029   13.4   1.7    2.2  2  Lycopene_cycl   Lycopene cyclase protein
     0.0021   18.5   0.2        0.2   12.1   0.0    3.1  3  NAD_binding_7   Putative NAD(P)-binding
      0.008   15.1   0.0      0.012   14.4   0.0    1.3  1  Trp_halogenase  Tryptophan halogenase
  ------ inclusion threshold ------
      0.016   15.2   0.3        9.2    6.2   0.9    2.9  3  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
      0.037   13.4   0.1         14    5.0   0.0    2.4  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.039   13.5   2.1        0.5    9.9   3.2    2.3  3  DAO             FAD dependent oxidoreductase
      0.042   14.4   1.0        5.8    7.6   2.1    2.5  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
      0.052   13.8   0.0        8.2    6.7   0.0    2.5  2  TrkA_N          TrkA-N domain
      0.096   11.0   0.0       0.13   10.6   0.0    1.1  1  OATP            Organic Anion Transporter Polypeptide (OATP) 


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.6   0.0   4.2e-55   3.3e-52       1     294 []       5     326 ..       5     326 .. 0.87

  Alignments for each domain:
  == domain 1  score: 177.6 bits;  conditional E-value: 4.2e-55
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH...........................HHHHCHHHHC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias...........................evvkklnqgi 67 
                  +++++iG+G AG+aaa  +a++g+kv+l+e     +g c + gc++sk+l +++++   ++                           e + k++++ 
   CCG92686.1   5 YQLAIIGAGTAGFAAASLAAKKGIKVALIEgaekIGGLCILKGCMPSKTLIESSRRFWDLQqaktfglkveaisvdmqqiqwrkrkliETFAKYREEE 102
                  5789*************************99999**************9999999988777899****999999998888888887776666777776 PP

                  CCCHCCTCEEEEESCEEEEETEEEC....TCEEEEEE.SEEEE---EEE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  68 elllgeevvkidpgkkkvklekkke....gdeekiay.dklvlAtGssprdl.gipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAa 159
                  +l l    v+++++++ +k  ++ e    + e+++ y + +++ tGs   d+ +ipG++  +      l+s+ al+l+ lp++i+v GgG++++E+A+
   CCG92686.1 103 ILSLP---VDFIRARASFKSPNELEiirrDGEKQLLYaNVIIITTGSAI-DPlPIPGLMASG-----FLTSDSALELEHLPESITVLGGGPVACEFAQ 191
                  66666...66668888888888888999955556666266667777555.555*****3333.....479999999********************** PP

                  HHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE..EEE.EEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Pyr_redox_2 160 alaklgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgnge..kle.vvledgeeidadlvvvavGvrpstelle.eklgleld 253
                  ++++lg+++t++++ +rll+++d+e+s++l++ +++eG++v   t+++ +   +   k++    ++++e+  + +++a G+rp+ + l+ ek+g+ + 
   CCG92686.1 192 FFSRLGCKTTIIQRSPRLLKQFDPEVSQCLKDCFTAEGITVFSDTQIESVSIVNGlkKVSfFFKGKKKEVLSKEIFYALGRRPNLKHLGlEKIGIHT- 288
                  ************************************************998888766666899999999**************************99. PP

                  ETTEEE--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 254 erggivvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  +   ++v+++++t++p+i+a+GDv+   g++  ++ A ++G
   CCG92686.1 289 DFQSLEVNDKMQTSIPHIFAAGDVT---GNFGIVHIAREEG 326
                  999**********************...8888888888876 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.9   0.00034      0.27       2      35 ..       7      40 ..       6      43 .. 0.93
   2 !   65.6   0.0   5.6e-21   4.4e-18       1      76 [.     176     250 ..     176     255 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00034
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                ++++G+G+ g  +A+ +a+ g kV ++e ++k+ 
  CCG92686.1  7 LAIIGAGTAGFAAASLAAKKGIKVALIEGAEKIG 40
                79**************************999986 PP

  == domain 2  score: 65.6 bits;  conditional E-value: 5.6e-21
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgvesv 76 
                 +++v+GgG +++E+A+++++lg+k+t+++rs++ll+++D+e+s+ l++ ++++gi+v  +t++e++   + g+++v
  CCG92686.1 176 SITVLGGGPVACEFAQFFSRLGCKTTIIQRSPRLLKQFDPEVSQCLKDCFTAEGITVFSDTQIESVSIVN-GLKKV 250
                 589**************************************************************98333.24445 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   5.7e-20   4.5e-17       3     106 ..     353     451 ..     351     454 .. 0.93

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 5.7e-20
                    EEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTSBSS CS
  Pyr_redox_dim   3 tvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladtihi 98 
                     vvftdpe a+vG+       +g e   +k  f++ g+a+++++++gfvK+ a+ +tg++l  +i+Gp+a+eli+ l++ + ++ +vedl +  ++
     CCG92686.1 353 EVVFTDPETAMVGILPR----NG-ETISAKYFFQDHGKAIIEGKEHGFVKIYAEPSTGEILCGTIIGPHASELIHLLSTCMYFRGKVEDLLHMPFY 443
                    69***********9654....44.6667999***************************************************************** PP

                    SSSTGGGG CS
  Pyr_redox_dim  99 hPtlseal 106
                    hPtlse l
     CCG92686.1 444 HPTLSEIL 451
                    *****965 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   4.5   3.3e-08   2.5e-05       2      49 ..       7      57 ..       6     165 .. 0.82
   2 ?    5.4   0.0      0.01       7.9       2      30 ..     177     205 ..     176     224 .. 0.87
   3 !   13.1   0.0   4.8e-05     0.037     342     391 ..     291     340 ..     281     341 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3.3e-08
                EEEE-SSHHHHHHHHHHHHTT--EEEE..ES-GGGTT--.SSSSEEE-TTH CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLi..thkldtiael.sCnpsiggiak 49
                + +iG+G AG++AA  aa++G+kv+Li  ++k++ ++ l +C ps   i +
  CCG92686.1  7 LAIIGAGTAGFAAASLAAKKGIKVALIegAEKIGGLCILkGCMPSKTLIES 57
                579************************997777665544389999887744 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.01
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLith 30 
                 ++V+GgG   ce A   +rlG+k+++i+ 
  CCG92686.1 177 ITVLGGGPVACEFAQFFSRLGCKTTIIQR 205
                 79***********************9954 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 4.8e-05
                 -GGGB-TTSBBSSSBTEEE-CGGGTB-SHHHHHH.HHHHHHHHHHHHHCTS CS
        GIDA 342 dprqllntLetkkvkgLflAGqinGteGYeEaaa.qGllAGinaarkakgk 391
                 ++ +++++++t+ ++++f+AG+++G  G +  a   G +A+ na   ++gk
  CCG92686.1 291 QSLEVNDKMQTS-IPHIFAAGDVTGNFGIVHIAReEGEIAAKNALELLAGK 340
                 6778899****9.***************99877679********9988887 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.1     4e-14   3.1e-11       2     305 .]       9     310 ..       8     310 .. 0.75

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 4e-14
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkg.nign..siyrypkemtfispsf......tsekleipdlnaiseetspafslkeeklsrkealeYlrev 90 
                  IiGaG aG aaa  + k+g+ ++  +E + +ig    ++    ++t+i +s       + + +++ +++ais + +  ++ +++kl  +++++Y +e 
   CCG92686.1   9 IIGAGTAGFAAASLAAKKGI-KVALIEGAeKIGGlcILKGCMPSKTLIESSRrfwdlqQAKTFGL-KVEAISVDMQQ-IQWRKRKL-IETFAKYREEE 102
                  9*******************.69999998788862235566677777776641111102333333.34555555543.44444444.34466666554 PP

  Pyr_redox_3  91 aksfelpiklfeeVesvkkedegfevetske..tyeAkkviiAtGefdkPnklnipGeeklvkhyskvk.efhkyagqkvvViGgknSavDaAlelvr 185
                       lp+       s k+ +e  +++ + e   + A+ +ii tG    P  l ipG       +s    e+ +   + ++V Gg+  a++ A  + r
   CCG92686.1 103 --ILSLPVDFIRARASFKSPNELEIIRRDGEkqLLYANVIIITTGSAIDP--LPIPGLMASGFLTSDSAlEL-EHLPESITVLGGGPVACEFAQFFSR 195
                  ..3468999999999999999999998876543899*********96666..57999986666666655244.555899******************* PP

  Pyr_redox_3 186 kgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvk..tedgkkvevkddvvlatGykpdlsflkkslfel 281
                   g++ t++ r+  + k       +  p + + l+++ + e i+v +++++++++  +   kv+  ++ +kk   ++++++a+G +p+l+ l  +++ +
   CCG92686.1 196 LGCKTTIIQRSPRLLK-------QFDPEVSQCLKDCFTAEGITVFSDTQIESVSIVNGLKKVSffFKGKKKEVLSKEIFYALGRRPNLKHLGLEKIGI 286
                  **********985555.......578999999999999988**********999877666665425665555558999999*********99988888 PP

  Pyr_redox_3 282 dedgrpvlteeteetnvpglflaG 305
                  ++d + +  +++++t +p +f aG
   CCG92686.1 287 HTDFQSLEVNDKMQTSIPHIFAAG 310
                  888777777889**********99 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.3e-09     1e-06       2      44 ..       7      49 ..       6      98 .. 0.89
   2 !    5.9   0.0    0.0087       6.8      60     133 ..     189     260 ..     153     267 .. 0.59

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.3e-09
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglva 44
                  + ++G+g+aG+aAA  Aa++G kv+L+e  + +GGl   ++ +
    CCG92686.1  7 LAIIGAGTAGFAAASLAAKKGIKVALIEGAEKIGGLCILKGCM 49
                  679********************************98766655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0087
  FAD_oxidored  60 areflerlrqrggarlkkrskwntfepevakavleemlaeagvtvllntrlvevekegkriesvtveskegrkt 133
                   + +f++rl  +++  +++++  + f+pev + + + + ae g+tv+ +t++++v   +  +++v +  k ++k+
    CCG92686.1 189 FAQFFSRLGCKTTIIQRSPRLLKQFDPEVSQCLKDCFTAE-GITVFSDTQIESVSIVN-GLKKVSFFFKGKKKE 260
                   455666664444443332222247***9976655555555.**********9999975.789998877665444 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   3.0   1.8e-08   1.4e-05       1      35 [.       9      43 ..       9      48 .. 0.97
   2 !    7.3   0.0    0.0068       5.3       1      31 [.     179     209 ..     179     210 .. 0.96

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.8e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGra 35
                   I+GaG +G +aA+l+ak+g++v l+e ++++GG +
     CCG92686.1  9 IIGAGTAGFAAASLAAKKGIKVALIEGAEKIGGLC 43
                   9********************************76 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0068
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31 
                    ++G+G  ++ +A++ ++ g++ +++++++rl
     CCG92686.1 179 VLGGGPVACEFAQFFSRLGCKTTIIQRSPRL 209
                    89************************99986 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.1   2.3e-05     0.018       2      33 ..       7      38 ..       6      43 .. 0.92
   2 ?   -1.8   0.0       3.1   2.4e+03      20      53 ..      69     102 ..      64     117 .. 0.79
   3 !   11.3   0.0   0.00031      0.24       2      70 ..     177     244 ..     176     252 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.3e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdisee 33
                +a+iGaGt G   a+++a++g++V l++ +e+
  CCG92686.1  7 LAIIGAGTAGFAAASLAAKKGIKVALIEGAEK 38
                79************************997765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.1
                 HTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTT CS
     3HCDH_N  20 sagleVvlvdiseealekalekieksleklvekg 53 
                   gl+V  + ++ ++++  ++k+ ++++k  e++
  CCG92686.1  69 TFGLKVEAISVDMQQIQWRKRKLIETFAKYREEE 102
                 4599999999999999999888888888876655 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00031
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEE CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisft 70 
                 ++v+G G +  + a+ f + g++++++++s++ l++   ++++ l+    ++ ++    +++++ +s+ 
  CCG92686.1 177 ITVLGGGPVACEFAQFFSRLGCKTTIIQRSPRLLKQFDPEVSQCLKDCFTAEGIT-VFSDTQIESVSIV 244
                 89**********************************9999999999887777776.4445555555555 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   5.5   2.5e-06     0.002       3      36 ..       8      41 ..       6      45 .. 0.93
   2 !    7.2   0.0    0.0029       2.3     374     410 ..     284     323 ..     280     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.5e-06
                   EEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2  3 iViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36
                    +iG+G AG aAA  aa++G kva++e +++ gg
     CCG92686.1  8 AIIGAGTAGFAAASLAAKKGIKVALIEGAEKIGG 41
                   79**************************999887 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0029
                    -EEEBETT.SBESTTEEESSBTEEE-STCE..ESSSSTTS CS
  FAD_binding_2 374 gGvetden.grvldadgqpipGLYAaGeva..aggvhgan 410
                     G++td + ++v d+ ++ ip  +AaG v+   g+vh a+
     CCG92686.1 284 IGIHTDFQsLEVNDKMQTSIPHIFAAGDVTgnFGIVHIAR 323
                    699***762699******************6556666555 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   1.1   0.00025      0.19      31      58 ..       7      34 ..       4      39 .. 0.89
   2 !    9.5   0.0   0.00071      0.56      29      69 ..     175     215 ..     170     250 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
                 EEEESTSHHHHHHHHHHHHTT-EEEEEE CS
  AlaDh_PNT_C 31 vlviGgGvaGlqAiatakglgakVtvlD 58
                   +iG+G+aG +A++ a++ g kV +++
   CCG92686.1  7 LAIIGAGTAGFAAASLAAKKGIKVALIE 34
                 579********************99876 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00071
                  -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C  29 akvlviGgGvaGlqAiatakglgakVtvlDvrparleqles 69 
                    ++v+GgG +  + ++  ++lg k+t++  +p+ l+q++ 
   CCG92686.1 175 ESITVLGGGPVACEFAQFFSRLGCKTTIIQRSPRLLKQFDP 215
                  5799*********************************9985 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   3.1   2.3e-07   0.00018       2      36 ..       6      40 ..       5      47 .. 0.93
   2 ?   -0.6   0.0      0.53   4.1e+02       4      38 ..     178     212 ..     175     272 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.3e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 ++++iG+G AG+ aA  aak+g +V+l+e a+k+g
   CCG92686.1  6 QLAIIGAGTAGFAAASLAAKKGIKVALIEGAEKIG 40
                 689******************************98 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.53
                  EEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HH CS
  HI0933_like   4 iviGgGaAGlmaAisaakrgkrVlllekakklgrK 38 
                   v+GgG+     A   ++ g++++++ + ++l++ 
   CCG92686.1 178 TVLGGGPVACEFAQFFSRLGCKTTIIQRSPRLLKQ 212
                  56666666666666666666666666666665554 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.6   1.3e-05    0.0099       3      32 ..       6      35 ..       4      41 .. 0.91
   2 ?    5.0   0.0     0.016        12       5      35 ..     178     208 ..     175     220 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.3e-05
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   + +I+GaG aG+ +a+l +++G++v l+e 
     CCG92686.1  6 QLAIIGAGTAGFAAASLAAKKGIKVALIEG 35
                   678*************************95 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.016
                    EEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvekrst 35 
                     + G+Gp+    a++ s+ G +++++ +  +
     CCG92686.1 178 TVLGGGPVACEFAQFFSRLGCKTTIIQRSPR 208
                    689***********************99765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.3     2e-07   0.00015      20      70 ..       7      56 ..       4      65 .. 0.90
   2 ?   -2.4   0.0       2.9   2.3e+03      18      49 ..     175     205 ..     159     206 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2e-07
                EEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTBSEEEEE CS
        Thi4 20 vvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlfsaivvr 70
                ++i+GaG++G +aa   akk ++kva++e    +GG   l G + s+ +++
  CCG92686.1  7 LAIIGAGTAGFAAASLAAKK-GIKVALIEGAEKIGGLCILKGCMPSKTLIE 56
                689************99999.***************999999988887776 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.9
                 EEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4  18 sDvvivGaGssGLtaayylakkpdlkvailer 49 
                   + + G+G+     a+ +++  + k++i+ r
  CCG92686.1 175 ESITVLGGGPVACEFAQFFSRL-GCKTTIIQR 205
                 4588999***999999999999.999999987 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0082       6.4       1      33 [.       7      39 ..       7     153 .. 0.81
   2 !   10.2   0.0     0.001      0.78       2      34 ..     178     210 ..     177     248 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0082
                EEEE--STTHHHHHHHHHHHTEEEEEEES-GGG CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpreef 33
                l+i+Gag  + a a+laa+ g++v +++  e++
  CCG92686.1  7 LAIIGAGTAGFAAASLAAKKGIKVALIEGAEKI 39
                78************************9987765 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.001
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa 34 
                  ++G+g+va + a++ ++lg+++t+++  +++ 
  CCG92686.1 178 TVLGGGPVACEFAQFFSRLGCKTTIIQRSPRLL 210
                 689***********************9998654 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   1.7   3.8e-05     0.029       2      36 ..       7      39 ..       6      41 .. 0.88
   2 ?    2.3   0.0     0.088        69       2      37 ..     177     210 ..     176     217 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.8e-05
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   +++iGaG Ag + A     ak+g+kv lie+++++
     CCG92686.1  7 LAIIGAGTAGFAAASLA--AKKGIKVALIEGAEKI 39
                   79********9877666..***********99886 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.088
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsll 37 
                    + v G+Gp  +  A+    ++ g k ++i+ sp ll
     CCG92686.1 177 ITVLGGGPVACEFAQFF--SRLGCKTTIIQRSPRLL 210
                    6799*************..***********999886 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.29   2.3e+02      11      40 ..       8      37 ..       4     144 .. 0.74
   2 !   12.1   0.0   0.00025       0.2       9      55 ..     176     225 ..     170     276 .. 0.69
   3 ?   -0.7   0.0       2.4   1.9e+03      16      41 ..     326     351 ..     325     386 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.29
  NAD_binding_7 11 lvvGgGevAarkvrklleagakvtvvapev 40
                    ++G+G+ +   ++  +++g kv ++  + 
     CCG92686.1  8 AIIGAGTAGFAAASLAAKKGIKVALIEGAE 37
                   79************99*******9997663 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00025
  NAD_binding_7   9 kvlvvGgGevAarkvrklleagakvtvvapev...keeleelvklaeeel 55 
                    ++ v GgG+vA + ++ + + g+k t++       k++ +e  ++ ++++
     CCG92686.1 176 SITVLGGGPVACEFAQFFSRLGCKTTIIQRSPrllKQFDPEVSQCLKDCF 225
                    689************************97664334444334444444444 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.4
  NAD_binding_7  16 GevAarkvrklleagakvtvvapevk 41 
                    Ge+Aa+ +  ll+ +   +v++ +++
     CCG92686.1 326 GEIAAKNALELLAGKEPTHVISRRLT 351
                    999**********9999999999863 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.6e-05     0.012       2      93 ..       7      97 ..       6     125 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE.-SSS---SS-EE--TH...HHHTHHHHT--HHHHCHHCT-EEE-EEEEESSSSCESEEEEESS- CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlve.seeigtvgvGeatips...irkllrlLgideeeflreteatfKlgikFedWgkkgeryihsFga 93
                    + i+G+GtaG+ aA++ ak +   ++v l+e +e+ig + + ++ +ps   i+   r+ ++++++ +     ++ + ++  +W+  +++ i+ F++
      CCG92686.1  7 LAIIGAGTAGFAAASLAAKKG---IKVALIEgAEKIGGLCILKGCMPSktlIESSRRFWDLQQAKTFGLKVEAISVDMQQIQWR--KRKLIETFAK 97
                    68**************99999...99****956789998888888886443455677777777665555555566666666666..4556666666 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.9     0.012       9.2       2      29 ..       7      34 ..       6      41 .. 0.89
   2 ?    4.5   0.0     0.041        32       1      40 [.     176     215 ..     176     241 .. 0.86
   3 ?   -0.6   0.0       1.5   1.2e+03      73     141 ..     354     422 ..     343     430 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.012
                    EEEE--SHHHHHHHHHHHTTT--EEEE- CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwv 29
                     a++GaG  G a A + a++g +v l+ 
      CCG92686.1  7 LAIIGAGTAGFAAASLAAKKGIKVALIE 34
                    69********************999876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.041
                     -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHH CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeine 40 
                     +i+vlG+G     +A+ +++ g+++++++r++ l+++++ 
      CCG92686.1 176 SITVLGGGPVACEFAQFFSRLGCKTTIIQRSPRLLKQFDP 215
                     59******************************99998864 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.5
                     EEE---HHHHHHHHHHHCCC--TT-EEEE---SE.ET.TTEEHHHHHHHHH-S--EEEEESS--HHHHHT CS
  NAD_Gly3P_dh_N  73 ivlvvPsqalrevlkklkgllkkkailvsliKGi.eegtlkllsevieeelkeekvavlsGpslAeEvak 141
                     +v+  P  a+  +l +  +++++k  +    K i e +++ +++ ++e  ++e  ++ + Gp +A+E+++
      CCG92686.1 354 VVFTDPETAMVGILPRNGETISAKYFFQDHGKAIiEGKEHGFVKIYAEPSTGEILCGTIIGP-HASELIH 422
                     56666777777777777778877777777888884444445555555555666669999999.7888765 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.9     0.019        15      38      65 ..       6      33 ..       3      40 .. 0.89
   2 ?    5.0   0.0     0.018        14      37      71 ..     175     209 ..     160     226 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.019
                  EEEEES-SHHHHHHHHHHHHTT-EEEEE CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkafgmkviay 65
                  +++iiG+G  G a+a ++++ g+kv  +
    CCG92686.1  6 QLAIIGAGTAGFAAASLAAKKGIKVALI 33
                  689*********************9876 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.018
                   SEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHH CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgmkviaydrskkk 71 
                   + + ++G G ++ ++a+ ++ +g+k ++++rs++ 
    CCG92686.1 175 ESITVLGGGPVACEFAQFFSRLGCKTTIIQRSPRL 209
                   56889*************************99874 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.2   0.00064       0.5       2      33 ..       7      40 ..       6      44 .. 0.92
   2 ?   -2.3   0.0       3.3   2.6e+03       2      29 ..     177     206 ..     176     209 .. 0.88
   3 ?   -3.1   0.0       5.7   4.4e+03     149     176 ..     218     245 ..     212     269 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00064
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                ++iiG+G +G ++A  +a++g  V+l+e ++ +g
  CCG92686.1  7 LAIIGAGTAGFAAASLAAKKGikVALIEGAEKIG 40
                68**************************987776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.3
                 EEEECTSHHHHHHHHHHHHTT..EEEEESS CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekg 29 
                 + + GGG + +  A + +r g  +t++ ++
  CCG92686.1 177 ITVLGGGPVACEFAQFFSRLGckTTIIQRS 206
                 889***********9999999999999887 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5.7
                 HHHHHHHHHHTT-EEEESECEEEEEEEE CS
         DAO 149 taalaraaealGveilegtevtgleeed 176
                  + l + + a G++++  t++++++  +
  CCG92686.1 218 SQCLKDCFTAEGITVFSDTQIESVSIVN 245
                 5667777899999999999999986643 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.1    0.0075       5.8       2      30 ..       7      32 ..       6      43 .. 0.82
   2 ?    3.0   0.0      0.19   1.5e+02       2      47 ..     177     218 ..     176     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0075
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEE CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivv 30
                   ++iiGaG  g+a as ++++g    ++ +
     CCG92686.1  7 LAIIGAGTAGFAAASLAAKKG---IKVAL 32
                   89*******************...66554 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.19
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg 47 
                    i ++G+G ++  +a+ +++ g    + +++ +r+p  ++++  e++
     CCG92686.1 177 ITVLGGGPVACEFAQFFSRLG---CKTTII-QRSPRLLKQFDPEVS 218
                    899******************...666656.999998888877766 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.057        45       2      31 ..       8      37 ..       7      40 .. 0.89
   2 ?    6.7   0.0      0.01       8.2       1      43 [.     177     219 ..     177     231 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.057
                EEES-SHHHHHHHHHHHHTTEEEEEEESSH CS
      TrkA_N  2 iiiGlGrvGrslaeeLseggkdvvvidkde 31
                +iiG+G+ G + a    ++g++v +i+  e
  CCG92686.1  8 AIIGAGTAGFAAASLAAKKGIKVALIEGAE 37
                79****************8888****9766 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.01
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSE CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreegle 43 
                 i ++G G v+ + a+ +s+ g+ + ++i ++++ ++++  e  +
  CCG92686.1 177 ITVLGGGPVACEFAQFFSRlGC-KTTIIQRSPRLLKQFDPEVSQ 219
                 679****************999.5***********999877655 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00016      0.13     334     438 ..     142     245 ..     134     293 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 334 lltGvvvipgaalGillgGllvkklklsakklaklvlvvsllsllllllllf..lgCetskvagvtvsyeelnqvenltssCnsdCsssseakkkstte 430
                 + tG+++ p  + G++++G+l++   l+ ++l   ++v++   +++ ++ +f  lgC+t+ ++      + l+q +  +s+C +dC +++  +  s t+
  CCG92686.1 142 ITTGSAIDPLPIPGLMASGFLTSDSALELEHLPESITVLGGGPVACEFAQFFsrLGCKTTIIQRSP---RLLKQFDPEVSQCLKDCFTAEGITVFSDTQ 237
                 5689999999**************************************99997789***9999854...3445567889*******9777666666666 PP

                 xxxxxxxx RF
        OATP 431 ttncscaa 438
                  ++ s+++
  CCG92686.1 238 IESVSIVN 245
                 66665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 3136.85
//
Query:       CCG92687.1  [L=230]
Description: HAD family hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-13   50.4   0.0    3.7e-13   49.9   0.0    1.2  1  HAD_2           Haloacid dehalogenase-like hydrolase
    1.7e-09   37.6   0.0    3.3e-09   36.7   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like
    2.4e-08   34.6   0.0    3.7e-08   34.0   0.0    1.3  1  HAD             haloacid dehalogenase-like hydrolase
    4.5e-06   27.1   0.0    0.00014   22.3   0.0    2.1  1  Hydrolase       haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   8.3e-17   3.7e-13       1     178 []       8     196 ..       8     196 .. 0.81

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 8.3e-17
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee.......kieellrkyneekkk.kevkpydgvkelLeeL 91 
                 i++D+DgTl+ ++   + a+ ++++e    e+ ++el+ + g ++ ++ +++ ++  + +        ++ +l+  +ee+   ++ k+++g+ ++L+++
  CCG92687.1   8 ILWDIDGTLIHSSGSGVRAIFRTINELYNLEMHPKELD-YRGRTDLMIAKQILNRCGVPWtpenlsiYRNHYLKVLREELTSqDTGKLCPGILDILQTI 105
                 89**********99999888888888755588888886.56666656666666665555566657766677777777777767889************* PP

       HAD_2  92 .keagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekalekl.......klkkeeviyvGDsptDieaakkagikviav 178
                  +   +k+g+ T + r+a++ kl+   + +yF++ + ++  e +    + ++ +  +l        ++k + ++vGD+p+D+ +ak ag ++iav
  CCG92687.1 106 sTISTVKMGLLTGNFRKAAQIKLSYYRVWTYFSFGLFGDLHESR----NYLASMAAELvmtmfgqVIDKRNFWVVGDTPHDVLCAKFAGFTSIAV 196
                 66689*********************************999888....4444444444455578789************************9997 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   7.3e-13   3.3e-09      18      73 ..     167     219 ..     147     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 7.3e-13
                     ---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEE CS
  Hydrolase_like  18 gsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddla 73 
                      +d+++ +++GD+  +D+++A+ aG +s++V+tG +++++l   ++kp+y ++dla
      CCG92687.1 167 VIDKRNFWVVGDT-PHDVLCAKFAGFTSIAVATGGFSKGELD--QYKPDYSFEDLA 219
                     5789*********.9***********************9976..889****99985 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   8.3e-12   3.7e-08       1     188 []       8     187 ..       8     187 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 8.3e-12
         HAD   1 alfDfDgTLldg.dsle........lllrfllrrgaprl...wralreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpkll 86 
                 +l+D+DgTL+++  s+         +l    l++++++l   +r+ +  ++++l+r +  +  + l    +++l+ l+ e   ++ ++++         
  CCG92687.1   8 ILWDIDGTLIHSsGSGVraifrtinELYN--LEMHPKELdyrGRTDLMIAKQILNRCGVPWTPENLSIYRNHYLKVLReELTSQDTGKLC--------- 95 
                 79**********87777766654432222..22222222223444444455555777777777777777777888888777777777777......... PP

         HAD  87 dpgalella.ahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalre..wlaaegegidleevvayGDsps 182
                  pg+l++l+       ++  +++g++r  ++++l  +     + t      +++ +  l+g++   ++ +a+ ++   + + g+ id  + +++GD+p+
  CCG92687.1  96 -PGILDILQtISTISTVKMGLLTGNFRKAAQIKLSYYR----VWT------YFSFG--LFGDLHESRNYLASMAAelVMTMFGQVIDKRNFWVVGDTPH 181
                 .********77778888*********************....***......*****..55555555556655555468899999999999********* PP

         HAD 183 Dlpllr 188
                 D+ +++
  CCG92687.1 182 DVLCAK 187
                 **9996 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0     3e-08   0.00014       3     210 .]       7     190 ..       5     190 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3e-08
                 EEEEESBTTTBCHH.HHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH...HHHH.HHHHHETTTEHHHHTHHH.......HHHHHHCHHHHHHH CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxx.xxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttge.psvedvivsaalalaaaletgsehpigkalvaaakar...sgal.tgfatfigrgayaigkpe.......wltaldippdlgaa 89 
                  +++D+dGTL++++ + v+ +++ +                     ++  ++   + +l  +      r  ++i k+        w+ ++         
  CCG92687.1   7 IILWDIDGTLIHSSgSGVRAIFRTI---------------------NELYNLemhPKELdYRG-----RTDLMIAKQIlnrcgvpWTPEN--------- 70 
                 5899*******99987777777777.....................33333312222222222.....2245555555444455588888......... PP

                 HHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHT.TEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  90 igsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaa.gievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireL 186
                      s  r ++l+   +++++t +d+ k+ p++ + ++++     ++++lltg++++ a+  ++ +    yf++ + +d ++    + ++  +++  +
  CCG92687.1  71 ----LSIYRNHYLK--VLREELTSQDTGKLCPGILDILQTISTIsTVKMGLLTGNFRKAAQIKLSYYRvWTYFSFGLFGDLHESRNYLASMAAELVMTM 163
                 ....999*******..**************************99666**************88888888899999999999996666666666666555 PP

                 .T..STGGGEEEEESSHHHHHHHHHTT CS
                 .x..xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 187 .q..gkpeevamVGDgvnDaaalaaAg 210
                  +  +++++  +VGD++ D+  ++ Ag
  CCG92687.1 164 fGqvIDKRNFWVVGDTPHDVLCAKFAG 190
                 43469999***********99998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1530.54
//
Query:       CCG92688.1  [L=260]
Description: Enoyl-(acyl-carrier-protein) reductase (NADH) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-85  284.8   0.0    5.5e-85  284.6   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.1e-20   74.0   0.0    1.4e-20   73.6   0.0    1.1  1  adh_short     short chain dehydrogenase


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.6   0.0   6.2e-89   5.5e-85       1     234 []      15     256 ..      15     256 .. 0.98

  Alignments for each domain:
  == domain 1  score: 284.6 bits;  conditional E-value: 6.2e-89
                   TTT..TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE...E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG..CSS-GGG CS
  adh_short_C2   1 Gaa..sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae...v.lecDVtdeeqvealveevvekfgklDilvnnagiapk..lkgpfle 89 
                   G+a  ++I++a+Ak+ +e+Ga++++ +++e++kk ve+l +el+++   + ++cDV++e++++++++e+ ++f k+D l++++++apk  l+++f e
    CCG92688.1  15 GVAnkWSIAWAVAKTWHEAGANLIIGYQGERLKKPVEALLSELPSSppsLaFPCDVSNEQEIKSFFSEALKHFPKIDLLLHSIAFAPKeaLEKNFYE 111
                   899999**************************************7766526********************************************** PP

                   H-HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHH CS
  adh_short_C2  90 tsreefdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfd 186
                   t+re+f +++++++ys+++la++a+ l+++ggsi++ls++gae+v++ny+++g aK ale+++rylA+e+g+++iRvNa spgpi+Tlaa+gi+gf 
    CCG92688.1 112 TTREDFIKTFEISVYSFIALAREAKALFTDGGSILTLSYYGAEKVISNYKIMGPAKSALESTVRYLAYEFGKDQIRVNALSPGPINTLAARGISGFT 208
                   ************************************************************************************************* PP

                   HHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 187 elleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   ++l+e+ea++pl+r+++++eva++alfLasde+++itGqt++vD+G++
    CCG92688.1 209 KFLKECEAKSPLKRNVEAKEVASVALFLASDESKAITGQTIYVDCGYS 256
                   **********************************************96 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   1.5e-24   1.4e-20      11     187 ..      21     201 ..       9     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1.5e-24
                 HHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT...TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S....S--SSGGGCSHHHHH CS
   adh_short  11 GIGraiakelakeGakvvvvdrseekleevakelkee...gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi....tgsgpfselseeewe 102
                  I  a+ak+  ++Ga++++ +++ e+l++ ++ l +e   +   la+++Dv++++e++ ++++a k++ k+d+L +  +     +  ++f e++ e++ 
  CCG92688.1  21 SIAWAVAKTWHEAGANLII-GYQGERLKKPVEALLSElpsSPPSLAFPCDVSNEQEIKSFFSEALKHFPKIDLLLHSIAFapkeALEKNFYETTREDFI 118
                 6999************988.77777777777777766666788*******************************999999898878899********** PP

                 HHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short 103 rvievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 +++e+ + + + l+r++   +    +G+I + s   +++   ++   + +K a+++ +r la e+ +++irvna+ PG+++T  a
  CCG92688.1 119 KTFEISVYSFIALAREAKALFT--DGGSILTLSYYGAEKVISNYKIMGPAKSALESTVRYLAYEFGKDQIRVNALSPGPINTLAA 201
                 ****************888866..99*****9999999999****************************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1902.55
//
Query:       CCG92689.1  [L=59]
Description: hypothetical protein MFUM_720056 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 433.37
//
Query:       CCG92690.1  [L=103]
Description: hypothetical protein MFUM_720057 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 722.33
//
Query:       CCG92691.1  [L=124]
Description: transposase (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       914  (0.0509789); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 926.36
//
Query:       CCG92692.1  [L=41]
Description: hypothetical protein MFUM_720059 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        84  (0.00468515); expected 358.6 (0.02)
Passed bias filter:                       74  (0.00412739); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 315.47
//
Query:       CCG92693.1  [L=645]
Description: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase fused to PHP family phosphoesterase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-19   70.7   0.0    3.3e-19   69.6   0.0    1.6  1  MGDG_synth       Monogalactosyldiacylglycerol (MGDG) synthase
    2.4e-06   27.9   0.1    3.2e-05   24.3   0.0    2.6  2  PHP              PHP domain
    8.2e-05   23.0   0.0      0.001   19.5   0.0    2.4  2  Glyco_trans_1_4  Glycosyl transferases group 1
    0.00019   21.4   0.0    0.00041   20.4   0.0    1.5  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
  ------ inclusion threshold ------
      0.016   14.8   0.1      0.033   13.7   0.1    1.5  1  Glycos_transf_1  Glycosyl transferases group 1
       0.07   12.4   0.2       0.15   11.4   0.2    1.5  1  DUF1235          Protein of unknown function (DUF1235)
       0.13   11.7   0.0       0.26   10.7   0.0    1.4  1  Urocanase_C      Urocanase C-terminal domain


Domain annotation for each model (and alignments):
>> MGDG_synth  Monogalactosyldiacylglycerol (MGDG) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   1.3e-22   3.3e-19       1     169 []      15     182 ..      15     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 1.3e-22
                 -HHHHHHHHHHHHHHHGGGEEEEEEE----------------.--------.---------------------------HHHHHHHHHHH--SEEEE-S CS
  MGDG_synth   1 Hnqaaealkealkaefgdeyqvlvkdllkelnpfllkavlks.Ylflvkvs.alyrllyygteekiqkksilaklatflakelaalleeeqPDiiisth 97 
                 Hn aa  ++ea++    de+ v  +dl+       ++ +l++ Yl ++  +  ++r +y + +     +  l   +  + ++l  ll+e qPD+++st+
  CCG92693.1  15 HNTAARNIQEAIEHLEPDEAIVDRIDLFDTCYGK-ISDLLRQgYLTAINRApLIWRGIYSIFDRTSFIEDVL-VAFAKMKQALDWLLREMQPDVVLSTY 111
                 99*********999999***********987766.55555555*****999789999999988544444444.45667899****************** PP

                 TTTTHHHHHHHHTTT-TTTSEEEEE---SSS--GGG--TT-SEEEESSHHHHHHHHHCT--GGGEEE--S-- CS
  MGDG_synth  98 plvaelplsvLkskellkrvlvvtvvtDfellhktWlrkeidryyvaskevkkealekGidksnikvtGiPv 169
                 p+   l   + k+ +++ +++ +tv+tD  +++++W r   d+++v++k+++  ++++Gi +++i  +G Pv
  CCG92693.1 112 PFYNFLIEEIFKDGKEK-NFVQITVITDSITVNSFWYRSWSDYFVVPNKDTATILKSAGIAEERILEFGFPV 182
                 **998855555776655.8****************************************************8 PP

>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.2   5.1e+02     108     156 ..     261     352 ..     114     361 .. 0.65
   2 !   24.3   0.0   1.3e-08   3.2e-05       1      72 [.     403     493 ..     403     623 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.2
                 .....HHHHHHS..................TTGG...............................................HHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................................xxxxxxxxxxxxxxx RF
         PHP 108 kpridkellekhsegLivlsgclkGevfealdli...............................................eveekaeealeelak 156
                 + +i++ ll+ h    +++s +    v+ea+ ++                                               ++++k++++l+++ k
  CCG92693.1 261 TDKIPELLLSHH----VIISKAGGATVQEAIAACcpmiipqvvpgqeegnyellrryevacfaekpsdigsaldflfedeaKHWKKLKNNLKKISK 352
                 355666666666....55555555556666666666666666666666666666666666666666666666666677777777777777777765 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 1.3e-08
                 EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTT.....................HHHHHHHHHHH..HTTTTSEEEEEEE....... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
         PHP   1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlf.....................gyvefykaakk..kykagikpiiGleayvadds 72 
                 d+H+H++ys  dg lsi e+v+   ++g++ i++TDh +                       +y+e +++ kk   +k ++ + +G+e+   +d+
  CCG92693.1 403 DFHIHSTYS--DGRLSIGEIVDFYGQRGFDCICVTDHLVDRkrligkfceltglvltptkvgEYFETIEKEKKraWKKYEMILFCGIEF--NKDG 493
                 79******9..556889********************9766899*****************9999999999884423345555667774..3333 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.26   6.8e+02       5      28 ..      86     107 ..      82     161 .. 0.81
   2 !   19.5   0.0     4e-07     0.001      24     115 ..     219     310 ..     207     335 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.26
                      EEES---GG.GTHHHHHHHH.HHHH CS
  Glyco_trans_1_4   5 lfvGrleenvkgvdllleav.pllr 28 
                      + + ++   ++++d+ll+++ p + 
       CCG92693.1  86 VAFAKM---KQALDWLLREMqPDVV 107
                      555555...4899*******99987 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 4e-07
                      HHHHH.H.HEE.EEEES---....HHHHHHHTT-T.TEEEE---THHHHHHHH-SEEEE-----SHHHHHHHHTT-EEEE-TG.GGTTT--TTS CS
  Glyco_trans_1_4  24 vpllrkk.dvr.lvivGdgprp..eeleelaagleerveftGfvedlaellaaadvfvaPsegfglkllEamaaglpvVatdv.ggiaevvgen 112
                      + +l+++ +++  ++vG++ ++   ++ + ++g+eer++++G+ ++++ell +++v +      g ++ Ea aa +p++  +v +g +e  g+ 
       CCG92693.1 219 IDQLLSRkKWEaTIVVGKD-EKlfYNIADHIKGFEERIKVLGWTDKIPELLLSHHVIISKA--GGATVQEAIAACCPMIIPQVvPGQEE--GNY 307
                      4444444257625667754.3333556666679***********99********9999877..479**************998348666..544 PP

                      SEE CS
  Glyco_trans_1_4 113 gll 115
                       ll
       CCG92693.1 308 ELL 310
                      433 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.6e-07   0.00041      30      97 ..     226     295 ..     205     309 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.6e-07
                      HHHCHHHCCT-EEC---STT..-TTTTCEEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT--EEE CS
  Glyco_tran_28_C  30 relqvlhqtGkreleevkik..veeltlkvevfefidkmaeaikaadLvIsRAGagtiaEllalgkplIl 97 
                      ++ + ++ +Gk+e+   +i    +++++ ++v+  +dk+ e++ + +++Is+AG  t+ E+ a+  p+I+
       CCG92693.1 226 KKWEATIVVGKDEKLFYNIAdhIKGFEERIKVLGWTDKIPELLLSHHVIISKAGGATVQEAIAACCPMII 295
                      34556678888877777777778888899**************************************995 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.3e-05     0.033      51     168 ..     232     346 ..     203     352 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
                      EEES.STTHHHHHHHHHH.HCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS-HHHHHHHHTT--EEEET.TTTHCH....HCHTTTSEE CS
  Glycos_transf_1  51 viaGngeeekelkklaee.lelsdnviflgevsredleellknadifvlpsisEgfGivllEAmaaglpviasn.aggpae....vvkdgetGl 138
                      +++G  ++ek + + a++  + ++++++lg  +  +++ell + ++++ +    + G ++ EA+aa +p i+ + ++g  e    +++ +e  +
       CCG92693.1 232 IVVG--KDEKLFYNIADHiKGFEERIKVLGWTD--KIPELLLSHHVIISK----AGGATVQEAIAACCPMIIPQvVPGQEEgnyeLLRRYE--V 315
                      4556..666666666665257899********9..*************99....***************9998877776651111555555..4 PP

                      EE-TT-HHHHHHHHHHHHHSH.HHHHHHHHH CS
  Glycos_transf_1 139 lvkpnnaealaeairkllede.elrerlgen 168
                       + ++++ ++  a++ l ede ++ ++l++n
       CCG92693.1 316 ACFAEKPSDIGSALDFLFEDEaKHWKKLKNN 346
                      5555578888899999998886444444444 PP

>> DUF1235  Protein of unknown function (DUF1235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   5.7e-05      0.15     144     199 ..     183     237 ..     128     247 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.7e-05
     DUF1235 144 kienikysnnlsllnPlkkdeivfiikqildvlnkvvCeqilinkeWysiikadek 199
                 + e ++y++n +ll+P+++ +i++ii       +k + +q+l  k+W + i ++++
  CCG92693.1 183 QLEFLEYAQNSMLLEPIRQPKILYIINSGRKKASK-IIDQLLSRKKWEATIVVGKD 237
                 567789********************998777666.56*********876654433 PP

>> Urocanase_C  Urocanase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0001      0.26      43      93 ..     187     238 ..     170     249 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0001
                  HHHHHHH----SS.-EEE----TTHHHHHHHHHHHHHHHSSSSS-EEEEE-S CS
  Urocanase_C  43 ikeAeekvkvqGl.paRilyldaeeRekialafnelvregeikapvvlgRDh 93 
                  ++ A+++++++ + + +ily+  ++R+k+++ +++l+ +++ +a++v+g+D 
   CCG92693.1 187 LEYAQNSMLLEPIrQPKILYIINSGRKKASKIIDQLLSRKKWEATIVVGKDE 238
                  55666666665542679*********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4546.73
//
Query:       CCG92694.1  [L=329]
Description: Biotin-(Acetyl-CoA carboxylase) ligase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-08   34.3   0.1    3.6e-08   33.2   0.1    1.7  1  BPL_C            Biotin protein ligase C terminal domain
    2.4e-08   33.9   0.0    3.7e-08   33.3   0.0    1.3  1  BPL_LplA_LipB    Biotin/lipoate A/B protein ligase family
     0.0014   18.2   0.0     0.0028   17.2   0.0    1.4  1  BPL_LplA_LipB_2  Biotin/lipoate A/B protein ligase family


Domain annotation for each model (and alignments):
>> BPL_C  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1     6e-12   3.6e-08       1      40 [.     287     326 ..     287     328 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 6e-12
                 STTSEEEEEETSCEEEEEEEEE-TTSEEEEEETTE.EEEE CS
       BPL_C   1 hsGqeVtlededgkveGiavGIdddGaLllktddglqpdi 40 
                 h+++ V +e +++k++G+++GId+ G Ll++ ++g++++i
  CCG92694.1 287 HLNEKVAFEANGQKIVGRVKGIDETGCLLIESANGSIQKI 326
                 9**********************************99987 PP

>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   6.2e-12   3.7e-08       3     118 ..     102     214 ..     100     228 .. 0.71

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 6.2e-12
                    EEES-HHH.HHH..GCGGG--TT-EEEEEEESS-B....-B--B-TT.SEEEEEEEEESS...-CCGTHHHHHHHHHHHHHHH......HHTT-TT CS
  BPL_LplA_LipB   3 evikstnt.llkeslnsselesgglvvvrrqtgGr....nvwhspkg.eltyslllspeqktfqnrvlelyvsllvlavlealgyrdskpgiegip 92 
                    +vi stn+ + k    +++ + g++v+ +rq  Gr    + w+s    +l++++ll+p+ +   ++ l+++   ++l+++eal+    + g +++ 
     CCG92694.1 102 QVIGSTNDeVIK--QAKRKAKEGLVVISDRQLQGRgrqgRSWESFLPlGLYMTVLLRPKWPVANPQQLAIL---SSLSTAEALF----QMGLQTVA 188
                    567777664333..33445788999999***********9**99777899999****88866665555555...5566666662....22677666 PP

                    EEEETTTEEEETTEEEEEEEEEEEE..T CS
  BPL_LplA_LipB  93 vfikwpnDlyvngrKlaGiavtstr..g 118
                    ++  wpnD++v  +Kl+Gi+++  r  g
     CCG92694.1 189 IK--WPNDIVVATKKLGGILIEIDRddG 214
                    66..****************99777542 PP

>> BPL_LplA_LipB_2  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.6e-07    0.0028      44     154 ..     151     259 ..     148     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.6e-07
  BPL_LplA_LipB_2  44 aAlvlaPevplakAaamlpvlmvalqdAlgalaPPevavhlewpgtilvngarvGgvrlaaseadeeevPdwlvvglelalekeseepGetpde 137
                      + + l P+ p+a+ ++++ +  ++ ++Al  ++   ++v+++wp++i v   ++Gg+ ++++  d  +  + + +g++l+ ++ + ++  + ++
       CCG92694.1 151 MTVLLRPKWPVANPQQLAILSSLSTAEALFQMGL--QTVAIKWPNDIVVATKKLGGILIEIDRDDGGDWFAAIGIGINLNQQTIHFSESLQGKA 242
                      6799****************************98..9999*******************99886665555555555555555555599999999 PP

  BPL_LplA_LipB_2 138 taLeeEGcaeveavall 154
                      t+ + E  ++v++v+ll
       CCG92694.1 243 TSFYLETGKKVRRVELL 259
                      ******99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2386.95
//
Query:       CCG92695.1  [L=271]
Description: Zn-dependent hydrolase, glyoxylase family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-17   62.8   0.1      4e-16   59.6   0.1    2.0  1  Lactamase_B    Metallo-beta-lactamase superfamily
    4.6e-05   23.0   0.1    0.00045   19.8   0.1    2.0  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.1   4.5e-20     4e-16       5     197 .]      94     252 ..      90     252 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 4.5e-20
                  SSEEEEEE..ETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTC CS
  Lactamase_B   5 pvnsylie..gdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllag 100
                   vn yl++    +++  +DtG+   +++ a     +++ +++v+ ++lTH H+DHi+ lg l++a  +p +++++e   + ++               
   CCG92695.1  94 TVNNYLLWdtMTKEAAAFDTGGNCTEMLDA-----IKVHGLRVKFILLTHTHADHIAELGRLKRAVEAPAYCCQLEIIPGAEPFS------------- 173
                  578888887666888889**********98.....9*****************************************99999999............. PP

                  HCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHHCHSEEEE.SS CS
  Lactamase_B 101 vsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaevrdpsdaekyldsllklaglkaevlvp.gH 197
                           +  +   +    +   t g+ +g++++ v+ g ++++++GD l+ag+ g +            s  e + +  +k+ +l+++++++ gH
   CCG92695.1 174 ---------PGKTFQLGNLSISSFLTNGHSPGGVSYYVTGGKRNLVIVGDSLFAGSMGGGNY----------SYTEALKNNREKILTLPDDTIICpGH 252
                  .........66666777778899999************************************..........**********************99*9 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1     5e-08   0.00045      30      66 ..     130     165 ..     110     223 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5e-08
                    SEEEEE-SS--HHHHGGGGCCCCC--EEEEEE.EEHHH CS
  Lactamase_B_2  30 pidaVllthaHyDHlaglltlrelrpkklply.apkgv 66 
                    +++++llth H+DH+a l  l++  +  +p y +++++
     CCG92695.1 130 RVKFILLTHTHADHIAELGRLKRAVE--APAYcCQLEI 165
                    6899******************9433..5666454443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2027.42
//
Query:       CCG92696.1  [L=146]
Description: Phytanoyl-CoA dioxygenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00046   20.4   0.0    0.00058   20.1   0.0    1.1  1  DUF5069   Domain of unknown function (DUF5069)


Domain annotation for each model (and alignments):
>> DUF5069  Domain of unknown function (DUF5069)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.2e-08   0.00058      13     108 ..      16     115 ..      13     134 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.2e-08
     DUF5069  13 glvilpRliDKvRlhaaGkl.geYvyn.ctlDarllsFlgidpealreavlsg.ksDeeilawvkenak.prsaeeieeWnkslekrgpkdaesqalfq 107
                 g+ +lpR+  K+ l a+G l   Y    + +Da+ ++ l+++++++r+ + +   s +e  aw+ ++     + +++++ n+ + ++  +++ ++a+++
  CCG92696.1  16 GVLHLPRMWLKCSLAAKGMLaDGYPDLgKGFDAMTMRALNLTEDEVRNYIRTNlPSYTEFEAWIVQKNGgKIDGAKVAAHNRAVLQYHHDAETKKAILE 114
                 789*****************77788778**********************98736889999**877766588999***********9998888887776 PP

     DUF5069 108 s 108
                 +
  CCG92696.1 115 E 115
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 914.78
//
Query:       CCG92697.1  [L=325]
Description: ABC-type Mn2+/Zn2+ transport system, periplasmic component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-54  183.9   0.0      4e-54  183.7   0.0    1.0  1  ZnuA      Zinc-uptake complex component A periplasmic
  ------ inclusion threshold ------
      0.047   13.4   0.0      0.087   12.5   0.0    1.4  1  DUF3172   Protein of unknown function (DUF3172)


Domain annotation for each model (and alignments):
>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.7   0.0   4.5e-58     4e-54       1     255 [.      37     302 ..      37     303 .. 0.92

  Alignments for each domain:
  == domain 1  score: 183.7 bits;  conditional E-value: 4.5e-58
                 EEESSHHHHHHHHHHHGGGCEEEECS-TTSTTTT----HHHHHHHHHSSEEEESSTTTSGTHHHHHHHHTTCCCEEEEETTTTCCSEBCSS........ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
        ZnuA   1 VvattsplgdlvrqvaGdrvevtvLvppgadpHsyeptprdvrklaeAdllvynglelEtwldkllasssqatrvevidlsegveeeeeee........ 91 
                 +++++ pl+ ++ +++Gd v+v+ L+  ga+pH+ +++ r++++++++dl+v ngl++E+wl+k l+s ++a++  ++  s+g+e+ ++          
  CCG92697.1  37 ILTSIAPLYCFCVNIGGDYVTVKNLIFFGAEPHEVSLSMRQMQEIQDSDLIVINGLGMESWLEKGLSSEEKAKK--IVVSSVGIEPIPSIGsfnklpan 133
                 78*************************************************************99977775555..44356677655555577777778 PP

                 .....ESTGGGSHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGTEGEEEESSSTTHHHHHHTT-EEEEEE.SSSSS. CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx. RF
        ZnuA  92 .....DpHiWlspknaiamveniadaLveadpanadtyeanaaayiekLeeldaeireelaeipeekrklvtthdafgylarayglevagia.giste. 183
                      +pH+Wl+p++ai++v ni++aL++ dp + +tye+naa+yi kL+e+d+ +re+l+e+ ++k     + d+f yl+++y++ +agi  ++ +  
  CCG92697.1 134 spysfNPHVWLDPNLAIQQVVNIKKALCQRDPLHTETYEKNAASYIFKLKEIDRMYREKLQEVTPKK--AYFFDDSFMYLTKRYDILIAGILeECGQRe 230
                 88889***********************************************************988..9999****************9987666668 PP

                 ...HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHHHT-EEEEE-STSSSTSTTSTTSHHHHHHHHHHHHHH CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ZnuA 184 ...aaqiaalieeikeagvkaifveplaspklaetlaeeagvkvatlysldslgdegsaetYidmmranleslke 255
                    ++++a  ie +++++++  ++ p ++++l+ ++++e + + ++++s++s +++   + Y ++ ++nl++l+e
  CCG92697.1 231 glsPKKLATAIEVMRKEKLPFFYT-PFSKKALVMEIIKESQTRSGEIDSMESANPDP--SLYETIAKKNLSVLVE 302
                 9*******************9777.999************************99997..79***********987 PP

>> DUF3172  Protein of unknown function (DUF3172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.7e-06     0.087      13      80 ..      15      79 ..       9      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.7e-06
     DUF3172 13 vlGigiGvalsstanldpenvasreaidraaPnaelCvqyGasaivvdlrvfvtlnPfnvyvsqpklk 80
                + GigiGv+l s   +++  +   +++ + aP   +Cv+ G   ++v+  +f   +P++v +s  +++
  CCG92697.1 15 LWGIGIGVWLLS---FKSYGLEKLKILTSIAPLYCFCVNIGGDYVTVKNLIFFGAEPHEVSLSMRQMQ 79
                569******999...556667777899999*******************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2435.95
//
Query:       CCG92698.1  [L=253]
Description: ABC-type Mn2+/Zn2+ transport system, ATPase component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-28   98.5   0.0    6.5e-28   98.0   0.0    1.3  1  ABC_tran      ABC transporter
    4.4e-10   39.9   0.5    7.3e-07   29.3   0.0    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    3.5e-05   24.4   0.7    0.00043   20.8   0.1    2.1  2  AAA_23        AAA domain
    0.00018   21.2   0.0    0.00041   20.0   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
    0.00033   20.9   0.0    0.00059   20.1   0.0    1.5  1  AAA_22        AAA domain
     0.0006   20.2   0.1      0.001   19.5   0.1    1.6  1  AAA_16        AAA ATPase domain
    0.00088   19.2   0.0     0.0018   18.2   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
     0.0027   17.5   0.0     0.0034   17.1   0.0    1.3  1  AAA_15        AAA ATPase domain
     0.0071   15.2   0.1      0.015   14.2   0.1    1.3  1  DLIC          Dynein light intermediate chain (DLIC)
     0.0081   15.6   0.1       0.32   10.4   0.0    2.2  2  SMC_N         RecF/RecN/SMC N terminal domain
     0.0095   15.9   0.0      0.017   15.1   0.0    1.4  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
  ------ inclusion threshold ------
      0.014   15.1   0.1      0.042   13.6   0.0    1.7  2  AAA_30        AAA domain
      0.043   13.6   0.3      0.098   12.4   0.2    1.6  2  AAA_24        AAA domain
      0.057   13.3   0.2       0.15   11.9   0.2    1.7  1  NACHT         NACHT domain
      0.062   13.3   0.6       0.42   10.6   0.2    2.1  2  AAA_14        AAA domain
      0.068   12.7   0.0       0.15   11.7   0.0    1.5  1  AAA_25        AAA domain
      0.074   11.8   0.1       0.87    8.3   0.0    2.3  3  ABC_ATPase    Predicted ATPase of the ABC class
      0.078   13.4   0.7        0.3   11.5   0.7    2.0  1  AAA           ATPase family associated with various cellular 
      0.088   12.4   0.3       0.17   11.5   0.1    1.6  2  SRP54         SRP54-type protein, GTPase domain
      0.091   13.0   0.2        1.7    8.9   0.2    2.2  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
       0.11   11.8   0.0       0.24   10.8   0.0    1.4  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.12   12.3   0.0       0.28   11.1   0.0    1.6  1  Rad17         Rad17 P-loop domain
       0.12   12.5   0.0       0.23   11.6   0.0    1.8  1  AAA_33        AAA domain
       0.12   12.6   0.1       0.77   10.1   0.2    2.1  2  AAA_19        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   8.7e-31   6.5e-28       2     136 ..      39     178 ..      38     179 .. 0.93

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 8.7e-31
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSB..HHHH..................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx..................x RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpelt..vren..................e 80 
                 ++vs+++++g++va++G+nGaGK+tLlk++ag  +p++G+i           +++    ig+lpq p++ + l   v+e                   e
  CCG92698.1  39 EDVSMEIERGKIVALIGPNGAGKTTLLKCFAGIIQPKKGSI-----------WRQPGLVIGYLPQRPSIPRYLPvtVEEFislrlgkyqllnglfggkE 126
                 79***************************************...........889999********88777765215555*****************99 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++e+i+++l+ ++ ++l ++++    ++LSgG+ q+v++a +l+k+p+llllDEp 
  CCG92698.1 127 RKEKIAELLKCFQAEDLLERRL----QELSGGEMQKVMVASTLAKNPDLLLLDEPL 178
                 9999******************....*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   9.8e-10   7.3e-07       1      58 [.      50      95 ..      50     100 .. 0.92
   2 !    9.3   0.1    0.0012       0.9     226     299 ..     140     211 ..     103     215 .. 0.73

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 9.8e-10
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipf 58
                + +liGpNg+GK++LL+++ ++            +++++g+i+ +p+l  +y p  p+
  CCG92698.1 50 IVALIGPNGAGKTTLLKCFAGI------------IQPKKGSIWRQPGLVIGYLPQRPS 95
                579****************999............889***********9999999886 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0012
      AAA_21 226 ngdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP...kll.rrllellkelsrngaQviltTHSp 299
                  +d  e+ + elS G  +   ++++ l+ ++  +lll+DEp +g++          ll  lke+++  +  +l++H+ 
  CCG92698.1 140 AEDLLERRLQELSGGEMQK-VMVASTLAKNP--DLLLLDEPLTGIDAtggI-EfDQLLHELKEKKE--IGTVLVSHDL 211
                 56778899999*****999.88888888887..9*******9999873321.12344444444444..6666666665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   5.8e-07   0.00043      20      40 ..      49      69 ..      37      77 .. 0.84
   2 ?    1.9   0.1      0.36   2.7e+02     127     161 ..     127     195 ..     103     216 .. 0.52

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.8e-07
      AAA_23 20 gltlItGpNGaGKTTildAik 40
                ++++++GpNGaGKTT+l ++ 
  CCG92698.1 49 KIVALIGPNGAGKTTLLKCFA 69
                6899**************986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.36
      AAA_23 127 skkiilnlilflgqerfeefelkdkke..................................rleeleke 161
                 +k++i +l+ ++++e+  e +l++ +                                   + ++l  e
  CCG92698.1 127 RKEKIAELLKCFQAEDLLERRLQELSGgemqkvmvastlaknpdlllldepltgidatggiEFDQLLHE 195
                 334466777777777742222222111333333444444444444444444444444444444444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   5.5e-07   0.00041      14      50 ..      40      76 ..      30      80 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5.5e-07
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                + ++ei++  ++ l+Gp+G+GK+Tll  ++ ++ p+k
  CCG92698.1 40 DVSMEIERGKIVALIGPNGAGKTTLLKCFAGIIQPKK 76
                5778998666****************88887777765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   7.9e-07   0.00059       4      99 ..      47     176 ..      43     209 .. 0.60

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 7.9e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee...........erpevvfvtlpsstsskdllrellralglelka..................... 70 
                 + +i++++G+ G+GKTtll+ ++   +  +   +           +           ++ ++ l   + +++ l+l +                     
  CCG92698.1  47 RGKIVALIGPNGAGKTTLLKCFAGIIQPKKGSIWrqpglvigylpQ----------RPSIPRYLPVTVEEFISLRLGKyqllnglfggkerkekiaell 135
                 7899*******************99987777777544444444431..........2223333333333333333333444444444444458888888 PP

      AAA_22  71 erlsseell.ealeqalrarav...........ielliiDE 99 
                 +  + e+ll ++l++ +   +            + ll++DE
  CCG92698.1 136 KCFQAEDLLeRRLQELSGGEMQkvmvastlaknPDLLLLDE 176
                 44444444433333333333333333333366666666666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   1.3e-06     0.001      24      52 ..      46      82 ..      35     230 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.3e-06
      AAA_16 24 p..elvllsGesGvGKsslvrellralekd......g 52
                +   +v l+G+ G GK++l+++++  ++ +       
  CCG92698.1 46 ErgKIVALIGPNGAGKTTLLKCFAGIIQPKkgsiwrQ 82
                3449********************9888885444431 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.4e-06    0.0018      81     126 ..      29      75 ..      13      84 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.4e-06
                  E--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  81 lvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelk 126
                  ++  ++++++e+++ +++  k+++l+G+ G+GK+tL++ +++  + k
   CCG92698.1  29 TIVYTEESAVEDVSMEIERgKIVALIGPNGAGKTTLLKCFAGIIQPK 75 
                  44445678999999999988*****************9988766555 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.6e-06    0.0034      15      50 ..      39      75 ..      37     147 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.6e-06
      AAA_15 15 kdveidlsee.ltvliGkNnsGKSsilealdlFlnnk 50
                +dv+++++   +  liG+N++GK+++l+ +  +++ k
  CCG92698.1 39 EDVSMEIERGkIVALIGPNGAGKTTLLKCFAGIIQPK 75
                5677777776699***************987777766 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1     2e-05     0.015      22      55 ..      45      78 ..      38      87 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
        DLIC 22 lPsgksvlvlGedgsGkttliaklqGveeekkGr 55
                +  gk v ++G +g+Gkttl+  + G+ ++kkG+
  CCG92698.1 45 IERGKIVALIGPNGAGKTTLLKCFAGIIQPKKGS 78
                567999***************************7 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00043      0.32      25      42 ..      49      66 ..      18      72 .. 0.84
   2 ?    3.3   0.1     0.065        48     134     189 ..     148     199 ..     107     225 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00043
                SEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlld 42
                ++ a++GpNG+GK+ ll 
  CCG92698.1 49 KIVALIGPNGAGKTTLLK 66
                5789**********9986 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.065
                 TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn 189
                  ++LSgGe + v++a  +A    k   l llDe    +D++   ++ +ll+e +++
  CCG92698.1 148 LQELSGGEMQKVMVASTLA----KNPDLLLLDEPLTGIDATGGIEFDQLLHELKEK 199
                 3489****99888887665....444577888888888888877777777765544 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.3e-05     0.017       4      40 ..      35      69 ..      32      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.3e-05
                HHHHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHH CS
        TsaE  4 eeetealgkklakalgdvilLeGdLGaGKTtlvrgla 40
                e+++e++  ++ +  g++++L G+ GaGKTtl + +a
  CCG92698.1 35 ESAVEDVSMEIER--GKIVALIGPNGAGKTTLLKCFA 69
                5667777777777..99****************9887 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.7e-05     0.042      18      47 ..      48      77 ..      36      92 .. 0.83
   2 ?   -1.4   0.0       2.1   1.6e+03      84     128 ..     163     213 ..     127     215 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.7e-05
      AAA_30 18 drvavltGpAGtGKttalkalreaweaagg 47
                 ++++l Gp G+GKtt+lk  + +++ ++g
  CCG92698.1 48 GKIVALIGPNGAGKTTLLKCFAGIIQPKKG 77
                46999**************99999887754 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.1
      AAA_30  84 arlepg.tllivDE....agmvdtkqlaallkaaekag.akvilvGDerQl 128
                  +l+++ +ll+ DE    +  ++  ++++ll ++++++ +  +lv  + Ql
  CCG92698.1 163 STLAKNpDLLLLDEpltgIDATGGIEFDQLLHELKEKKeIGTVLVSHDLQL 213
                 344444577777773211122344556666666666332666666666665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   0.00013     0.098       3      22 ..      49      68 ..      47      78 .. 0.84
   2 ?   -2.5   0.0       4.9   3.6e+03     147     171 ..     201     225 ..     182     234 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                + ++++Gp+g+GKTtl+k +
  CCG92698.1 49 KIVALIGPNGAGKTTLLKCF 68
                6799*************988 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.9
      AAA_24 147 rlepklgkktanelkeevDlvlran 171
                  + + l + + +++ +++D ++++n
  CCG92698.1 201 EIGTVLVSHDLQLVSHIADWIFFLN 225
                 3444444555566667777777766 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00021      0.15       2      21 ..      50      69 ..      49      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +v+l G++G GKTtLl+ +a
  CCG92698.1 50 IVALIGPNGAGKTTLLKCFA 69
                689*************9877 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00057      0.42       2      23 ..      48      69 ..      47      78 .. 0.88
   2 ?    0.7   0.0      0.69   5.1e+02      18      72 ..     117     176 ..     111     217 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00057
      AAA_14  2 rkilvitGaRrvGKTtllkqli 23
                +ki+++ G+  +GKTtllk ++
  CCG92698.1 48 GKIVALIGPNGAGKTTLLKCFA 69
                699**************98775 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.69
      AAA_14  18 llkqlikellvkkesilyi.n.ldderdkkladpe....kllelilek.lkeekktylflDE 72 
                 ll+ l+  +  +ke+i ++ + ++ e++ +++ +e    ++ +++ ++ l  ++  +l+lDE
  CCG92698.1 117 LLNGLFGGKE-RKEKIAELlKcFQAEDLLERRLQElsggEMQKVMVAStLA-KNPDLLLLDE 176
                 5555554444.4555554422133333333333333344444444444233.5888999999 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0002      0.15      30      53 ..      45      68 ..      24      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
      AAA_25 30 lpagelallaGapgtGKttlaldl 53
                + +g++++l+G+ g+GKttl+   
  CCG92698.1 45 IERGKIVALIGPNGAGKTTLLKCF 68
                4799****************8655 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0012      0.87     240     264 ..      43      68 ..      15      75 .. 0.86
   2 ?   -1.7   0.0       1.3   9.5e+02     323     349 ..     151     177 ..     140     206 .. 0.78
   3 ?    0.5   0.0      0.27     2e+02     378     412 ..     191     225 ..     186     242 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0012
                 EEE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAl 264
                 m i +G +++++G++  GK+TLL+  
  CCG92698.1  43 MEIERGkIVALIGPNGAGKTTLLKCF 68 
                 8999*99****************975 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.3
                 --HHHHHHHHHHHHHHTT-SEEEEEGG CS
  ABC_ATPase 323 ASGStsqAanimealeagakllLiDED 349
                  SG   q + ++  l  + +llL+DE 
  CCG92698.1 151 LSGGEMQKVMVASTLAKNPDLLLLDEP 177
                 588888999999999999999999995 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.27
                 HCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEE CS
  ABC_ATPase 378 drvrelykklgvstilvvggsgdyldvAdtvilme 412
                 ++++el +k ++ t+lv+  ++   ++Ad +  ++
  CCG92698.1 191 QLLHELKEKKEIGTVLVSHDLQLVSHIADWIFFLN 225
                 678999***********************998876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.7    0.0004       0.3       2      22 ..      52      72 ..      51     215 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0004
                EEESSTTSSHHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavakel 22
                 l+Gp G GKT+l k  a  +
  CCG92698.1 52 ALIGPNGAGKTTLLKCFAGII 72
                69*************999876 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00023      0.17       3      29 ..      50      76 ..      48      80 .. 0.84
   2 ?   -3.2   0.0       7.1   5.3e+03     100     109 ..     191     200 ..     156     212 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00023
                EEEEEESTTSSHHHHHHHHHHHHHHTT CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkeg 29
                +++l+G++GaGKTt l   a +++ ++
  CCG92698.1 50 IVALIGPNGAGKTTLLKCFAGIIQPKK 76
                789************999988877665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.1
                 HHHHHHHHHH CS
       SRP54 100 elmeelkkik 109
                 +l++elk+ k
  CCG92698.1 191 QLLHELKEKK 200
                 2334444333 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2    0.0023       1.7      25      47 ..     143     165 ..     128     186 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0023
     SbcCD_C  25 elsrssgtlSGGekqflaylala 47 
                  l+r+ ++lSGGe q+++    +
  CCG92698.1 143 LLERRLQELSGGEMQKVMVASTL 165
                 489999********887755444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00032      0.24      23      48 ..      49      74 ..      29      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00032
  Mg_chelatase 23 HnlllvGppGsGKtmlakrlpsllpp 48
                    + l+Gp G+GKt l k++++++ p
    CCG92698.1 49 KIVALIGPNGAGKTTLLKCFAGIIQP 74
                  56789*****************9976 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00037      0.28      36      71 ..      39      74 ..      30      83 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00037
       Rad17 36 kadvLesrkkriLLisGPsGCgkstvvkvLskelgi 71
                +  ++e ++ +i+ + GP G gk+t +k  + +  +
  CCG92698.1 39 EDVSMEIERGKIVALIGPNGAGKTTLLKCFAGIIQP 74
                55567777789*****************99877655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00031      0.23       2      17 ..      51      66 ..      50     211 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00031
      AAA_33  2 vllvGlpGsGKstlae 17
                v l+G++G+GK+tl++
  CCG92698.1 51 VALIGPNGAGKTTLLK 66
                789***********87 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2     0.001      0.77       9      35 ..      47      73 ..      39      87 .. 0.83
   2 ?   -0.9   0.0       2.5   1.8e+03     103     128 ..      98     124 ..      81     132 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.001
      AAA_19  9 kekvllvtaGpGtGKTrvlkhivallv 35
                + k+++++++ G GKT++lk+   +++
  CCG92698.1 47 RGKIVALIGPNGAGKTTLLKCFAGIIQ 73
                568999*************99876665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.5
      AAA_19 103 ee.llivDEfqdvdelqyrLlkallge 128
                 ++  + v Ef  +    y+Ll+ l+g 
  CCG92698.1  98 RYlPVTVEEFISLRLGKYQLLNGLFGG 124
                 44478999*************998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 1896.00
//
Query:       CCG92699.1  [L=288]
Description: ABC-type Mn2+/Zn2+ transport system, permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-46  159.1  22.9    1.7e-46  158.8  22.9    1.0  1  ABC-3            ABC 3 transport family
    1.4e-06   27.6  26.7    2.2e-06   26.9  26.7    1.4  1  FecCD            FecCD transport family
     0.0031   17.7   2.2      0.012   15.8   2.2    2.1  1  Phage_holin_Dp1  Putative phage holin Dp-1


Domain annotation for each model (and alignments):
>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.8  22.9   2.8e-50   1.7e-46       2     257 ..       6     273 ..       5     274 .. 0.96

  Alignments for each domain:
  == domain 1  score: 158.8 bits;  conditional E-value: 2.8e-50
       ABC-3   2 yeflqrallasilvslacallgsfvvlrrqsllgdalsHaalpGvalayllgvn.............lllgailvgliaavalellkrktklkedtaig 87 
                 ++fl+r ll+++l +  callg  +  r+q++++d+lsHa+++G +l++l+++              l++  +l  l +++++++  +k+kl+ dt++ 
  CCG92699.1   6 FDFLRRSLLGAALAGPTCALLGIITTSRGQAFFSDSLSHASIAGYGLGLLIELLafryfnlsfpetfLSAFLFLYCLGISLCFAYFLNKSKLEADTLLS 104
                 79***********************************************9988888899999999544444556688999******************* PP

       ABC-3  88 ivlsvflalglvlvslikkskvdldsyLfGniltisqedliliaiieavvllllllfwkelllitfdeelAkveglsvkllkllllalialavvvalqa 186
                 i+++ + a+g++l+++i      l+s LfG+i + s +d+ l+ ++++++++ ll+ +  lll+++de++A +eg+ vk l++  ++li+  v+++l++
  CCG92699.1 105 IIFTGSVAIGILLLTKIV-RYPLLESLLFGDINASSWTDIGLLGMVAVMTFSFLLFNMPALLLTMIDENMAISEGVGVKKLNYWTVLLIGGVVALSLKL 202
                 ******************.7789**************************************************************************** PP

       ABC-3 187 vGviLvialliiPaatArrltrslesllivAillglvsvvaGlllSyyldlatGavivlvatllfllallv 257
                  G++Lv+a+++iPaa+ ++++ +++sll+++ + g++ +v G++lSyy+d+ tG++iv + ++l+llall+
  CCG92699.1 203 LGALLVSAMIVIPAAAGKMWAWNFRSLLLISLVNGFLGAVGGVILSYYMDAMTGPTIVGCDIFLLLLALLF 273
                 *******************************************************************9987 PP

>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9  26.7   3.7e-10   2.2e-06      66     283 ..      37     248 ..       6     273 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.7e-10
       FecCD  66 vtrNpLadPsilGissgaalgavlalllllgslslfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesil 164
                  +   L   si G   g  + ++++ ++ l+ +++f  +++++ +  ++l + ++l    k++  +  +L+ i  ++++ ++    lll++  ++  + 
  CCG92699.1  37 FFSDSLSHASIAGYGLGLLIELLAFRYFNLSFPETFLSAFLFLYCLGISLCFAYFLN---KSKLEADTLLSIIFTGSVAIGI----LLLTKIVRYPLLE 128
                 555555555555555554444444444434444444444444455555566666666...4444444444444444444444....4444566899999 PP

       FecCD 165 fwllGslsgaswskvllllvllllllllllllarkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLiv.Phiarllvgadhr 262
                   l+G+++  sw+++ ll +++++++ +ll+++  l l ++++++A s Gv v++++++++ll+  ++a++  l G +   ++iv P  a ++   ++r
  CCG92699.1 129 SLLFGDINASSWTDIGLLGMVAVMTFSFLLFNMPALLLTMIDENMAISEGVGVKKLNYWTVLLIGGVVALSLKLLGALLVSAMIViPAAAGKMWAWNFR 227
                 9****************************************************************************998887644************* PP

       FecCD 263 kllplsallGallllladlla 283
                 +ll++s + G l  +   +l+
  CCG92699.1 228 SLLLISLVNGFLGAVGGVILS 248
                 ******999987766665555 PP

>> Phage_holin_Dp1  Putative phage holin Dp-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   2.2     2e-06     0.012       9      59 ..     200     248 ..     198     252 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2e-06
  Phage_holin_Dp1   9 lKwialvllPalatLvfalgkiynlpetelvVgtitaiatFLGvilgvsts 59 
                      lK +  +l+ a++++ +a gk++ ++  +   + i++++ FLG++ gv  s
       CCG92699.1 200 LKLLGALLVSAMIVIPAAAGKMWAWNFRS--LLLISLVNGFLGAVGGVILS 248
                      677778899******************95..679***********999655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2099.00
//
Query:       CCG92700.1  [L=209]
Description: Phosphoglycolate phosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-19   71.2   0.0    1.3e-19   70.9   0.0    1.1  1  HAD_2            Haloacid dehalogenase-like hydrolase
    2.6e-08   34.4   0.0    3.5e-07   30.7   0.0    2.1  1  Hydrolase        haloacid dehalogenase-like hydrolase
      1e-07   31.9   0.0    1.6e-07   31.3   0.0    1.3  1  Hydrolase_like   HAD-hyrolase-like
    3.9e-07   30.7   0.0    5.8e-07   30.1   0.0    1.3  1  HAD              haloacid dehalogenase-like hydrolase
     0.0023   17.7   0.3     0.0042   16.9   0.3    1.5  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.024   14.0   0.1      0.052   12.9   0.1    1.5  2  Put_Phosphatase  Putative Phosphatase
      0.042   13.7   0.1      0.091   12.6   0.1    1.5  1  Acid_PPase       Acid Phosphatase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   5.2e-23   1.3e-19       4     178 .]      10     177 ..       7     177 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 5.2e-23
       HAD_2   4 DlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkkkevkpydgvkelLeeLkeagyklgivT 102
                 D  gTl++  +++++a n ++  yg ++ls ee+++ + l+l+e ++ + ++    e+ e +  +++  + k  + +++ + e+Le  ++++y++ + +
  CCG92700.1  10 DWSGTLANDLPFVLKASNFIFGLYGKPKLSIEEFKETFFLPLKEFYKSYLPEVSFMEMNEHYHAIFQLFQVK--IPLLPYALEFLEFCQKKQYQVILLS 106
                 5669***********************************************999999999998888877777..************************* PP

       HAD_2 103 sksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikviav 178
                 + ++  + ++ ++lgie+yFd i+t+ d ++       i++++ek k++++++i++GD  +Dieaa++ gi ++av
  CCG92700.1 107 TIHQGHFIKQAKRLGIEQYFDRIYTEIDDKRI-----AIKQIIEKEKIDPKSTIFFGDMVHDIEAAHAGGIFSAAV 177
                 ***************************99988.....9*********************************99886 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.4e-10   3.5e-07     106     210 .]      73     171 ..       4     171 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.4e-10
                 HHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 106 ralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnDa 203
                  + ++f ++ p  + p a e+++  +++ ++v+ll+  ++ +  + a++lG ++yfd +++ ++++       + +++i++ +++p+ ++++GD v D+
  CCG92700.1  73 AIFQLFQVKIP--LLPYALEFLEFCQKKQYQVILLSTIHQGHFIKQAKRLGiEQYFDRIYTEIDDK-----RIAIKQIIEKEKIDPKSTIFFGDMVHDI 164
                 34455666667..*******************************************9999999997.....67799*********************** PP

                 HHHHHTT CS
                 xxxxxxx RF
   Hydrolase 204 aalaaAg 210
                 +a+ a g
  CCG92700.1 165 EAAHAGG 171
                 ***9876 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   6.3e-11   1.6e-07       9      75 .]     139     202 ..     117     202 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 6.3e-11
                     HHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEES- CS
  Hydrolase_like   9 mydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddlaea 75 
                     +++++ e+ ++dp+ +++ GD   +Di++A++ G+ s++VltG +++++l    ++p + +++l+ea
      CCG92700.1 139 AIKQIIEKEKIDPKSTIFFGDM-VHDIEAAHAGGIFSAAVLTGYNSKKKLL--SANPSFLFENLKEA 202
                     556677777999**********.************************9966..679*******9986 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.3e-10   5.8e-07       1     187 [.       7     167 ..       7     168 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.3e-10
         HAD   1 alfDfDgTLldgdsle.....lllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalell 94 
                 +++D+ gTL ++ ++      +++  l++++ ++  ++ +e+++l l +e+ ++       l e  +  ++e+ +a ++ f+  v+ p  l p ale+l
  CCG92700.1   7 VFLDWSGTLANDLPFVlkasnFIFG-LYGKPKLS-IEEFKETFFLPL-KEFYKS------YLPEVSFMEMNEHYHAIFQLFQ--VKIPL-L-PYALEFL 92 
                 6889999999995555565533333.44444433.555555555555.222222......2444455555555555555555..45554.5.8888888 PP

         HAD  95 aahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpll 187
                 + ++++ ++v+++S  ++      +++lg    +        ++++   + + + ++     a+++    e+e+id+++++++GD ++D++++
  CCG92700.1  93 EFCQKKQYQVILLSTIHQGHFIKQAKRLG----IEQ------YFDRI--YTEIDDKR----IAIKQ--IIEKEKIDPKSTIFFGDMVHDIEAA 167
                 8777*********9887766666667***....***......*****..99999999....*****..999999****************998 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   1.6e-06    0.0042     175     217 ..     123     165 ..      62     176 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.6e-06
                  STTEEEEEETT-SHHHHHHHHHHHCT--GGGEEEEESSGGGHH CS
  Hydrolase_3 175 skgyleimpkgvsKgtalkklakelnisleeviafGDgeNDie 217
                  ++++  i+ +  +K  a+k+++++ +i+++ +i fGD+  Die
   CCG92700.1 123 EQYFDRIYTEIDDKRIAIKQIIEKEKIDPKSTIFFGDMVHDIE 165
                  5555558888899****************************98 PP

>> Put_Phosphatase  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     2e-05     0.052      39     122 ..      52     132 ..      37     137 .. 0.80
   2 ?   -2.4   0.0      0.97   2.5e+03     163     182 ..     145     164 ..     135     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2e-05
  Put_Phosphatase  39 kglwnelmdrv.lkelheqgvseadikkvlrsiplspglvelikslakkkleldliiiSDaNs.ffieeileaagledlFseiftN 122
                      k+++++++ +v ++e++e+   + ++ +v  +ipl p  +e +++++  k+++++i++S   +  fi +  + +g+e++F++i+t 
       CCG92700.1  52 KEFYKSYLPEVsFMEMNEHYHAIFQLFQV--KIPLLPYALEFLEFCQ--KKQYQVILLSTIHQgHFI-KQAKRLGIEQYFDRIYTE 132
                      57999999988677888777776666555..9**************5..578*******98872566.556899**********95 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.97
  Put_Phosphatase 163 aregveyerliYvGDganDl 182
                       +e++  +  i+ GD   D+
       CCG92700.1 145 EKEKIDPKSTIFFGDMVHDI 164
                      34667778888888888886 PP

>> Acid_PPase  Acid Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.6e-05     0.091      54     155 ..      92     182 ..      65     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.6e-05
                 HHHHHHTT--EEEEE--S-HHHHHHHHHHTT-G..........GGESEEEESSS-HHHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SS CS
  Acid_PPase  54 leelkskevklavaSrtdepdlarelLklleindakekekklldvfddveiykgsktkhfeklkkktgieyedmlfFDdesrnievesrlgvtfvlvpd 152
                 le++++k+ ++++ S+ ++++  +           ++k+  ++++fd +     +k   ++++ +k +i+ ++ +fF d  ++ie  +  g+ ++ v  
  CCG92700.1  92 LEFCQKKQYQVILLSTIHQGHFIK-----------QAKRLGIEQYFDRIYTEIDDKRIAIKQIIEKEKIDPKSTIFFGDMVHDIEAAHAGGIFSAAVLT 179
                 555555555555555555555544...........45555666****98888899*******************************9999998888877 PP

                 S-- CS
  Acid_PPase 153 Glt 155
                 G +
  CCG92700.1 180 GYN 182
                 766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1463.47
//
Query:       CCG92701.1  [L=347]
Description: 3-isopropylmalate dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-25   87.7   0.0    1.6e-24   86.4   0.0    1.6  2  Lysine_decarbox  Possible lysine decarboxylase
    3.5e-08   33.2   0.0    5.5e-08   32.6   0.0    1.2  1  LDcluster4       SLOG cluster4 family
  ------ inclusion threshold ------
       0.23   10.7   0.0       0.36   10.1   0.0    1.2  1  DNA_processg_A   DNA recombination-mediator protein A


Domain annotation for each model (and alignments):
>> Lysine_decarbox  Possible lysine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.1   6.5e+03      88     103 ..      30      45 ..      20      52 .. 0.64
   2 !   86.4   0.0   2.8e-28   1.6e-24       7     131 ..     125     256 ..     119     257 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.1
                      EEEGGGCCHHHHHHHH CS
  Lysine_decarbox  88 llnpkgyydkllefle 103
                      + n ++y++ + ++l+
       CCG92701.1  30 IENRREYFEMIATVLR 45 
                      3455667777766665 PP

  == domain 2  score: 86.4 bits;  conditional E-value: 2.8e-28
                      HHH..HTTS-EEEEEECCHHH.HHCCTTT-S...EEEEESSHHHHHHHHHHHESEEEE-S-SHHHHHHHHHHHHHHHTTSS-S.EEEEEEGGG. CS
  Lysine_decarbox   7 gal..eaggrviGiipkilla.eeapneevn...elvivedmeeRkealveladafvilPGGiGTleElleiltliqlgkhqkvPiillnpkg. 93 
                      +a     + ++ G+  +i l+ e+ pne +n   +l+ ++++++Rk ++v++++a+ ++PGG+GT++E +e+ltl q+gk   vP++++++ g 
       CCG92701.1 125 AAQfgAGKDKSFGL--NIRLPfEQKPNEVINgdpKLISFRYFFNRKLHFVKESHAIALFPGGFGTMDECFETLTLLQTGKAPLVPFVFIDVPGg 216
                      44332335568888..77777777777776644468********************************************************99 PP

                      .CCHHHHHHHH.HHHHTTSS-GGGGGCEEEESSHHHHHHH CS
  Lysine_decarbox  94 .yydkllefle.tlveegtisekareliivvddpeevlek 131
                       y+++ +efl  +l++ g is+++ +l+ v++d +e+ ++
       CCG92701.1 217 tYWKNFVEFLSnNLLKRGLISAEDFNLFLVTEDLHEAKKE 256
                      **********989*******************99998765 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   9.2e-12   5.5e-08       3     113 ..      81     191 ..      79     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 9.2e-12
  LDcluster4   3 kigVmGsaeteakeealelaeelGrliAkegavlltGgrtGvmeaaskGakeag..GltvGilpassekehsnkyvdiiiyTGlglagRnlilvlssdv 99 
                 k++++Gsa+ + ++ +   a++  ++++++g++++tGg +G+meaa  Ga + +  Gl + +  +++ +e  n   d  +++   +  R l  v+ s++
  CCG92701.1  81 KVTIFGSARIKPQTPEWLSAKDFSKIMVESGFMVITGGGEGIMEAAQFGAGKDKsfGLNIRLPFEQKPNEVING--DPKLISFRYFFNRKLHFVKESHA 177
                 799******7644445569*****************************98777612555554444444454455..999999888888*********** PP

  LDcluster4 100 viaiggrsGTlsEi 113
                 + + +g+ GT+ E 
  CCG92701.1 178 IALFPGGFGTMDEC 191
                 ************97 PP

>> DNA_processg_A  DNA recombination-mediator protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0     6e-05      0.36      43      92 ..      80     131 ..      75     138 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6e-05
  DNA_processg_A  43 ravaiVGtRkaseygkev..akklakelaeagitivSGlAlGiDaaahraal 92 
                     ++v+i G+ ++ +++ e+  ak+++k ++e+g++++ G+  Gi +aa+ +a 
      CCG92701.1  80 KKVTIFGSARIKPQTPEWlsAKDFSKIMVESGFMVITGGGEGIMEAAQFGAG 131
                     57889999888888887634789*********************99998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2439.77
//
Query:       CCG92702.1  [L=611]
Description: Methylenetetrahydrofolate reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-40  138.8   0.0    4.6e-40  138.1   0.0    1.3  1  S-methyl_trans  Homocysteine S-methyltransferase
    6.6e-27   94.6   0.0    1.4e-26   93.5   0.0    1.4  1  MTHFR           Methylenetetrahydrofolate reductase


Domain annotation for each model (and alignments):
>> S-methyl_trans  Homocysteine S-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.0   5.2e-44   4.6e-40       1     267 [.      13     285 ..      13     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: 138.1 bits;  conditional E-value: 5.2e-44
                     EEB---SHHHHHHT----ST..THHCCHH.H-HHHHHHHHHHHHHHT-SEEE-TTTT--GG...T--HHHHH.HHHHHHHHHHHHHHHHH....H CS
  S-methyl_trans   1 lilDGgmgteLerradlsee..lwsaell.trpelikeihrdyleaGadiieTnTyqaskik..gleeeeeveelnraavelareaadeaaaplf 90 
                     li DG++gt L +   l  +  +  +el  ++p+l++++hrdy++aGa+ii+TnT ++++++   ++ e++++e++ ++v+la++a      + +
      CCG92702.1  13 LIGDGALGTYLYS---LGIPrgYCIEELSlSHPDLLEKVHRDYIDAGAKIIRTNTAESNAYHlsFFKLEKKLKEIVSRSVQLAKKALGSR--EGW 102
                     799********76...444433555555557****************************76665456669*****************987..678 PP

                     EEEEE--HHHHCTS---.--HHHHHHHHHHHHHHHHHCT-SEEEEEEE--HHHHHHHHHHHT.T...--EEEEE-ECCT.TETTS-BHHH.HHHH CS
  S-methyl_trans  91 vagsvGpygatlsdgydllsfeelveahreqiralleagvDlllietipdlleakaavellaae...lpvwisftikdestlrsGetleeavaal 182
                     +ag vGp+ +  +++ + +++++ +  ++e i+ l+e+gvDll++et++ l e+  ++++ +++   + + +  +++++ +l+sGetl ea  +l
      CCG92702.1 103 IAGTVGPIWTKPTES-P-IDMATRQSLYEELIASLIEEGVDLLFFETFTELPELLLVLDIARKKgaeKLFAFIASFEEG-KLSSGETLGEAFSKL 194
                     *******55544442.3.789999*********99**********************9988885544445555677666.6*********99999 PP

                     HCT-TE.EEEEEES--.GGGHHHHHHHHHTT--S-.EEEE---.S-........----------....-HHHTTEEEE---TT--HHHHHHHHH. CS
  S-methyl_trans 183 aaatqp.lavgvNCak.peelepllkelksetalpavivypnsage........vydltpeewaesaeewleaganiiGGCCgttpehIraiaea 267
                     + a    + vg+N a  ++    ll+e+ + +a +++++ypn+ g+        +y ++p  + e++++++e+g+ ++GG  gt+p+hI+a+a++
      CCG92702.1 195 RLA--GaTLVGINGACgVQASIHLLEEI-ELKAGDFLGAYPNA-GKpefydgtfTYSASPSYFGENVARFAEEGVCLLGGDYGTEPAHIAAMAQR 285
                     998..5488*****999***********.7777778******4.4445666668999***********************************985 PP

>> MTHFR  Methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   1.5e-30   1.4e-26      10     250 ..     325     571 ..     318     586 .. 0.88

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 1.5e-30
                 S-EEEEEE---SSHHHHHHHHHHHHHHGGGG-SEEEE---CCCTTHHHHHHHHHHHHHHH-S-EEEEEESTTS-HHHHHHHHHHHHHCT--EEEEE--S CS
       MTHFR  10 kalisfEffpPkteegernLleridrleevkplfvdvTwgaggstaeltssiakviqqelgleailhlTctdaskeeldkalekakelGirnilALrGD 108
                 k+++ +E+  Pkt     ++le ++ +e+++++ +++ +++ +  + +   +a  ++   ++  ilh+ c+d+++  l+++l+    lG r+ilAL+GD
  CCG92702.1 325 KPVFMVEYDSPKTLA-IGKFLEGVKAIEKAGADAITLADNSLAILRISNFAAAIHVRRVSKMIPILHVACRDRNLLGLQSELMGLGTLGFRHILALTGD 422
                 678899******976.567889*********************88888888888999999*************************************** PP

                 --TT-GG.C---S----SHHHHHHHHHH............HHCGGSEEEEEE-TT--TT-S-HHHHHHHHHHHHHCT--EEEEEE-S-HHHHHHHHHHH CS
       MTHFR 109 ppkdedk.weekeeefkyaldLvrlire............eygdlfdigvaaYPevhpeaksleadlkylkeKvdaGAdfiitQlffdvdkflkfveqv 194
                 p k +d+  ++++++++  + L+rl+ +            +    f ig+a     +p+  ++ea++k+l++K+ aGA+f++tQ +fd++   k  + +
  CCG92702.1 423 PAKSGDHpGATSVYDLN-SVGLIRLLASlnrgfnaagkdlKGKTDFIIGCAF----NPNTTQFEAQVKKLEAKLAAGAQFVMTQPVFDIQLIKKTYNYL 516
                 *******8888888987.7899999988888999777776333348888875....567889************************************* PP

                 HHCT-SS-EEEEE---SSHHHHHHHHHHH.T----HHHHCCCTCHCT-HHHHHHHHH CS
       MTHFR 195 reagidipiipgimpiksykslkrlakls.kvkiPqelldrleeikdddeavkkigi 250
                 +  gi  p++ g+mp+ +y+++++l + + +++iP+++ ++l++++ + ++   +g 
  CCG92702.1 517 KPLGI--PVFIGLMPLLNYRNAEFLHNEVpGISIPEAVREKLKALDGEKATELGVGF 571
                 ****9..*****************987666*************88777666555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4540.80
//
Query:       CCG92703.1  [L=432]
Description: CAAX family Zn-dependent protease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-31  107.9   0.0    8.9e-31  107.2   0.0    1.4  1  Peptidase_M48    Peptidase family M48
    1.4e-24   87.0  17.3    1.4e-24   87.0  17.3    1.7  2  Peptidase_M48_N  CAAX prenyl protease N-terminal, five membra
    5.4e-05   22.5   2.1    5.4e-05   22.5   2.1    1.9  2  Peptidase_M56    BlaR1 peptidase M56
     0.0019   17.8   0.0     0.0034   17.0   0.0    1.3  1  DUF2268          Predicted Zn-dependent protease (DUF2268)
     0.0027   17.6   0.1     0.0046   16.8   0.1    1.3  1  SprT-like        SprT-like family


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.0   2.5e-34   8.9e-31       1     195 [.     213     418 ..     213     419 .. 0.90

  Alignments for each domain:
  == domain 1  score: 107.2 bits;  conditional E-value: 2.5e-34
                    E--SSHHHHHHHHHHHHTT-..-EEEEEEE-GGGT....-EEEEESSS-EEEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48   1 plreaelkevveelakeaglpkpltkvyvvnspkr....NAFalgggknkrivltdgLlkqllseeelaaVlGHElGHikhrhsvvslivsllasi 92 
                    pl++++lk+++e+++k+ g+  p  +++v++++kr    NAF +g+gk +ri+l+d+L  + l++eel aVl HEl+H+  +h  +s +++ll  +
     CCG92703.1 213 PLEDKDLKDKIEKVFKKNGF--PIHQIFVMEGSKRslhsNAFLTGFGKHRRIILYDTLT-NQLDREELIAVLFHELAHYRLGHLWKSRLITLLGGL 305
                    6799****************..*************************************.***************************888888888 PP

                    HHHHHHHHHTT-SHHHHHTT--S--.-HHHHHHHHHHTT..........HHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48  93 llllglallisraeedaagafldal.avliglliillfl..........alSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrse 177
                    +++l l ll + ++  aa+    ++ +  +gl i+l+ l          +l Rk E ++D++++   + a+ l++al k+++++  + +s+ l+s+
     CCG92703.1 306 VMFLFLNLLDTHKTWIAAFSLDPNWsPSTFGLAIVLMPLflypleplknWLLRKAEKESDAFAALKWA-AEPLIEALKKIVSTNYLTYDSDPLYSM 400
                    8887777777777766666665443156667777776668899***********************99.*************************** PP

                    HS-SS--HHHHHHHHHH- CS
                    xxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 178 llstHPplleRiqalkel 195
                    ++++HP+  eRi+ ++++
     CCG92703.1 401 FYESHPSVFERIRWIEKI 418
                    *************99876 PP

>> Peptidase_M48_N  CAAX prenyl protease N-terminal, five membrane helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0  17.3   3.8e-28   1.4e-24      24     181 ..      57     209 ..      30     210 .. 0.93
   2 ?   -2.4   0.2         1   3.7e+03      51      67 ..     307     323 ..     290     349 .. 0.51

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 3.8e-28
  Peptidase_M48_N  24 fdksraYgldksrfglvsslyslilllallllgllpflwklsgkllgldaeseilqslvfllllslistlislPfslYstFviEekhGfnkqtl 117
                       + s  Y+ +k++++ ++s++  +l l+++ +g+l ++ ++++         +i+ +++fl+ +++++  +   fs  +tF iE ++Gfn++t+
       CCG92703.1  57 SSDSYLYANQKIKLAQLRSVFFYLLFLFWIPFGGLRMFEEFWKI----FPFPKIWSGCCFLISILWLEDTLRTLFSAIRTFGIESRFGFNRTTP 146
                      556778999*********************************88....6789****************************************** PP

  Peptidase_M48_N 118 klfikdklkslllalviglpllaallwiiewggeyfylylwlfllvfslllmtiyPtlIaPLFn 181
                       lf+ d++ +++l+l +++pl +++lwi e + + ++ly+w++++++ +l+ +++P++I PLF 
       CCG92703.1 147 ILFLFDQVGHWILSLFFLCPLFLLFLWIKE-LSSLWWLYCWAIWIILLFLIEWMLPVWIIPLFY 209
                      ***************************977.66******************************6 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1
  Peptidase_M48_N  51 allllgllpflwklsgk 67 
                      ++l+l+ll+   +++++
       CCG92703.1 307 MFLFLNLLDTHKTWIAA 323
                      33333333333333333 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.18   6.6e+02      36     110 ..       9      86 ..       5      91 .. 0.59
   2 !   22.5   2.1   1.5e-08   5.4e-05     102     227 ..     182     308 ..     173     312 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.18
  Peptidase_M56  36 lWlivllallipfipesavs.lpvkfetskinsaaskaplasaaskvlddkas...alatdvkkvewktilkil.lliWi 110
                    +W++vl+a  + +++ + +s        sk  ++++++ ++ +  ++l+++       ++++k  +  ++  +l  l Wi
     CCG92703.1   9 VWSVVLIAS-AELAWDYWLSsR-QLKYLSKKKTSQNSSFFNHTSFASLSSSSDsylYANQKIKLAQLRSVFFYLlFLFWI 86 
                    899888865.677788889852.333344445555555555555555555554556666666666666666555245555 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 1.5e-08
  Peptidase_M56 102 lkillliWivgalilllyliaallvlkkrfvrklgklraeelkeaLkeakeemq..lkrnikir..lsssidsPavlgllkp.rIvlPadflkkls 192
                    + ++++iWi++  +  +  +  + ++   ++ +l++l+++ lk+++++  ++ +  + +   +   + s  ++ +++g  k  rI+l + ++++l+
     CCG92703.1 182 WLYCWAIWIILLFL--IEWMLPVWIIP--LFYRLKPLEDKDLKDKIEKVFKKNGfpIHQIFVMEgsKRSLHSNAFLTGFGKHrRIILYDTLTNQLD 273
                    67899999877666..55555555555..999*****************99999533333333321344556777889988537999********* PP

  Peptidase_M56 193 deeleyillHElaHlkrkDllvnllvavlqclfwf 227
                     eel  +l HElaH + + l+   l+++l  l+ f
     CCG92703.1 274 REELIAVLFHELAHYRLGHLWKSRLITLLGGLVMF 308
                    *********************99999999877665 PP

>> DUF2268  Predicted Zn-dependent protease (DUF2268)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.4e-07    0.0034      11      97 ..     222     307 ..     217     307 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.4e-07
     DUF2268  11 kliealkkpdvdvf.ilpvneenrklieekgykgglaipdkiflfl.leneyskerlaallaHEyhHvvrlkqlekeeksiTllesivl 97 
                 k+ +++kk+ +++  i++++ ++r+   +++  +g++   +i+l+  l n+ ++e+l a+l HE+ H    +  +  ++ iTll  +v+
  CCG92703.1 222 KIEKVFKKNGFPIHqIFVMEGSKRS-LHSNAFLTGFGKHRRIILYDtLTNQLDREELIAVLFHELAHYRLGHLWK--SRLITLLGGLVM 307
                 67899********977777777755.555666777777777777776********************86544444..488999888887 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.3e-06    0.0046      43      76 ..     256     289 ..     215     297 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-06
   SprT-like  43 vrhhasIeLseklldsrsedrllntLaHElcHla 76 
                  ++h +I L  +l ++ ++++l+ +L HEl+H+ 
  CCG92703.1 256 FGKHRRIILYDTLTNQLDREELIAVLFHELAHYR 289
                 5789****************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2847.84
//
Query:       CCG92704.1  [L=205]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1491.24
//
Query:       CCG92705.1  [L=379]
Description: Protein-disulfide isomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-35  122.4   0.0    2.5e-35  122.1   0.0    1.2  1  Thioredoxin_4  Thioredoxin
    1.3e-06   28.3   0.1     0.0029   17.4   0.0    2.2  2  DSBA           DSBA-like thioredoxin domain
  ------ inclusion threshold ------
      0.067   12.9   0.1       0.12   12.0   0.0    1.5  2  Thioredoxin_5  Thioredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.0   4.2e-39   2.5e-35       4     165 ..      47     210 ..      44     211 .. 0.93

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 4.2e-39
                    SSEEES-TT-SEEEEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEE-..---STTTHHHHHHHTT--TTHHHHHHHHHHHHTHHHHTTS-. CS
  Thioredoxin_4   4 tdiviGnpdApvtvieyedlrCphCakfeeeveklleeyidtGkvkfiirdfpldkekeslkaamaarcageespeaflaikallysqqeewaes. 98 
                    +d++ G  +Ap ++iey+d++Cp+C++++e  ++ll++y  +G++ +i+r+ p +++ +s+ aa+ a++ag+e+   f+ +++ll+++q+ewa++ 
     CCG92705.1  47 GDWIKGPVRAPAFLIEYVDFQCPVCKRYNEINKQLLKDY--QGRLLIIYRHKPSPTHPYSFIAALSAEAAGKEG--CFWQMTDLLFEKQDEWANAq 138
                    799************************************..*********************************..*****************994 PP

                    .....HHHHH.....HHHHHTS-------HHHHHHHHHHHHHHT--SS-EEEETTEEE-TT--HHHHHHHHT CS
  Thioredoxin_4  99 .....lkelaaealdkdekfeacleeekldalveaeskeakkagiestPtfiingekveepqtyeelkalid 165
                           ++a++   +de+f ++l++++l++++ ++ ++  ++g ++ P+f++n e++ +pq+ye++k li+
     CCG92705.1 139 dpwklFRQYAQSLNIDDEHFLRNLKDPQLQKKIYKDIQSSLALGATTIPSFFLNAERIPNPQSYEDFKILIE 210
                    4444333366666667999****************************************************8 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1   0.00021       1.2       2      36 ..      60      95 ..      59     101 .. 0.87
   2 !   17.4   0.0   4.8e-07    0.0029      97     189 ..     110     206 ..      99     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00021
                EEEEEBTTBHHHHHHHHHHHHHHHHCCT.EEEEEEE CS
        DSBA  2 vdeffDvlCPyCylgkerleklaarspd.vkvvlrp 36
                ++e+ D++CP C+  +e  ++l++ +++ + + +r+
  CCG92705.1 60 LIEYVDFQCPVCKRYNEINKQLLKDYQGrLLIIYRH 95
                579**************9999999996667777776 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 4.8e-07
                 HHHH.GHHHHHHHHHHHHHTSSS-TSSHHH....HHHHHHHTTS.HHHHHHHHTSHHHHHHHHHHHHHHHHTT-SSSSEEEETTCEEEESSSSHHHHH CS
        DSBA  97 gaeg.laekvvrelfealwsegqaitddqe....llevaekaGldaeeldealeseavkeavrentaaaqslgvtGvPtvvvdgkrmvfGadrldtla 189
                  ae+   e  ++++ + l++++ +   +q+    +++ a+++ +d e + + l++++ ++++ ++ ++  +lg+t +P ++++ +  ++  ++++ ++
  CCG92705.1 110 SAEAaGKEGCFWQMTDLLFEKQDEWANAQDpwklFRQYAQSLNIDDEHFLRNLKDPQLQKKIYKDIQSSLALGATTIPSFFLNAE-RIPNPQSYEDFK 206
                 33333467788888888888888888888777779*************************************************9.899888888876 PP

>> Thioredoxin_5  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.2   7.1e+03       6      20 ..      69      83 ..      63      94 .. 0.54
   2 ?   12.0   0.0   2.1e-05      0.12     111     164 ..     139     192 ..     102     212 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.2
  Thioredoxin_5  6 PlcseCweiEpelkk 20
                   P+c++  ei+++l+k
     CCG92705.1 69 PVCKRYNEINKQLLK 83
                   444444455555444 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 2.1e-05
  Thioredoxin_5 111 skeellleiaekaglDveefkeDlesklakkafqcDlklakemgvtevPtlvff 164
                    + ++l  + a++ ++D e f + l+    +k+  +D++ +  +g t++P++++ 
     CCG92705.1 139 DPWKLFRQYAQSLNIDDEHFLRNLKDPQLQKKIYKDIQSSLALGATTIPSFFLN 192
                    458899********************************************9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 2960.66
//
Query:       CCG92706.1  [L=265]
Description: PIN-domain and Zn ribbon [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-48  162.6   0.0    9.2e-48  162.1   0.0    1.2  1  Mut7-C    Mut7-C RNAse domain
    9.4e-24   83.1   0.0    1.5e-23   82.4   0.0    1.3  1  Ub-Mut7C  Mut7-C ubiquitin
  ------ inclusion threshold ------
      0.011   15.5   0.0       0.02   14.7   0.0    1.4  1  DUF5615   Domain of unknown function (DUF5615)


Domain annotation for each model (and alignments):
>> Mut7-C  Mut7-C RNAse domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.1   0.0   1.5e-51   9.2e-48       2     145 ..     114     256 ..     113     257 .. 0.99

  Alignments for each domain:
  == domain 1  score: 162.1 bits;  conditional E-value: 1.5e-51
      Mut7-C   2 rfllDamlgklakyLRllGydalyasdvedeellalaakekrillTrdreLlkraklkkgvlltsrdveeqlreviarlglklslkpelsrCvaCngel 100
                 +f+lD++lg+la+yLRllG+d+ly+++++de+l+++a +e+rillTrd +Llkr+k+k+g+++++ +++ q +e++++++lk +l+p + rC++Cng l
  CCG92706.1 114 KFILDVHLGTLARYLRLLGFDTLYNNSYSDEQLADIAYAEERILLTRDPGLLKRKKVKQGYFVRAIEPRLQAIEILREFHLKEKLHP-FGRCLRCNGLL 211
                 8**************************************************************************************.*********** PP

      Mut7-C 101 eevekeevkervpekvyeeadeftrCekCrkvfWkGshwerveel 145
                 ++v+k e+k+ vp+kv e++++f +C++C++++W Gsh++r+++l
  CCG92706.1 212 QSVNKIEIKNVVPPKVSETQSSFLKCQRCGRIYWPGSHYHRMKAL 256
                 ******************************************986 PP

>> Ub-Mut7C  Mut7-C ubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0   2.6e-27   1.5e-23       3      80 ..      20      97 ..      18      98 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 2.6e-27
    Ub-Mut7C  3 titfrfyaeLndflprarreralavafdeaatvkhviEalGVPhtEVelilvnGesvgfshiledGdrvavypvfeal 80
                ++tfrfy  Lndflp  +r+++++ af ++ t+k++iE++GVPhtE++lil n  ++ f++ + dG +v v p f+ +
  CCG92706.1 20 ELTFRFYSLLNDFLPVWKRQKEIKKAFGKHTTLKDAIESFGVPHTEIGLILCNSLPATFEQKVIDGALVSVFPHFKTI 97
                689************************************************************************987 PP

>> DUF5615  Domain of unknown function (DUF5615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.3e-06      0.02       2      55 ..     114     161 ..     113     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.3e-06
     DUF5615   2 klllDenlsprlvellreaghdvlhvrelglegasDeeileyAkeedriivTkD 55 
                 k++lD +l   l++ lr +g+d+l+      ++ sDe+  ++A +e+ri++T+D
  CCG92706.1 114 KFILDVHLG-TLARYLRLLGFDTLYN-----NSYSDEQLADIAYAEERILLTRD 161
                 899999998.8999999999988887.....5689******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1642.56
//
Query:       CCG92707.1  [L=269]
Description: Hydrogenase expression/formation protein hoxQ [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-16   59.0   0.1    1.7e-08   34.1   0.0    2.1  2  HupH_C    HupH hydrogenase expression protein, C-terminal con


Domain annotation for each model (and alignments):
>> HupH_C  HupH hydrogenase expression protein, C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.7e-09   4.9e-05      34     103 ..      62     132 ..      33     138 .. 0.82
   2 !   34.1   0.0   9.7e-13   1.7e-08       6     116 ..     155     265 ..     151     267 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.7e-09
                 --HHHHHHHHHHH---SEEEEEE---E.EEEEE-SSTTEEEEEEE-TTS-EEEEEEEESSS-GGGS--HHH CS
      HupH_C  34 lseeDlelLdevLGegevtilsrgygn.critetavrgvWrvryfnsedklildtlevakvPevalaaaeD 103
                 + ++++e   + LG ge+ i ++  g+    ++t ++gvW+v+ + s dk+   ++e+  +P  +  ++e+
  CCG92707.1  62 VVQNEIEEFFRILGLGELCIFYSQSGAvFAAQQTLFSGVWWVEKKVSPDKTSSLSVEIGLIPRFVTVEQEE 132
                 456667777899***********99997899**********************************999986 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 9.7e-13
                 HHHHHHHHHHHHHHHH---EEEEGGGS---HHHHHHHHHHH---SEEEEEE---EEEEEE-SSTTEEEEEEE-TTS.-EEEEEEEESSS-GGGS--HHH CS
      HupH_C   6 ailaEiaealkalrpgeeahvinLtllPlseeDlelLdevLGegevtilsrgygncritetavrgvWrvryfnsed.klildtlevakvPevalaaaeD 103
                 a+++ + +++++   +++++ i+L+llPl ++D+++L + L + e+ti s+   ++ +  t ++++W+++ + +e+ +     l v+++P  +   + +
  CCG92707.1 155 ALISSLVRNTNENYLATNEKKIQLNLLPLVPQDKKALFNLLPKTEITIYSQQ-KQAWVFGTPWKNIWWIEELTDEEiNRRELGLLVCEFPYSLFPVSSE 252
                 66777777777777888999****************************9986.578999*********98665554155666899************** PP

                 HHHHHHHH..... CS
      HupH_C 104 ladsaerleelle 116
                 l+ sa+rle++++
  CCG92707.1 253 LRISARRLEKIAA 265
                 *********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2120.08
//
Query:       CCG92708.1  [L=509]
Description: Periplasmic glucans biosynthesis protein G [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.9e-145  484.4   0.0   6.2e-145  483.8   0.0    1.2  1  MdoG      Periplasmic glucan biosynthesis protein, MdoG


Domain annotation for each model (and alignments):
>> MdoG  Periplasmic glucan biosynthesis protein, MdoG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  483.8   0.0  3.4e-149  6.2e-145       3     475 ..      42     505 ..      41     506 .. 0.96

  Alignments for each domain:
  == domain 1  score: 483.8 bits;  conditional E-value: 3.4e-149
                 HHHHHHHHHHHHTS-----------------HHHHTT-EE-GGG-BTTTSSSS-EEEEEE-BTTB-S-BEEEEE.-SS-EEE----GGGEE-TTS---T CS
        MdoG   3 fetvkekaralaakpyaapeeelpealakldydqyrkirfrpekalwkeeklpfevqffhlgllfkepvkinev.edgkareiaydpslFdygkekkak 100
                 f+++++ka++l+ +py++p+ ++p +l++l+ydq+  i+f++++ ++ +e+ +f +++f+lg+lf +pv ++ + ++g+ ++  ++pslFd+++  +  
  CCG92708.1  42 FSRLVKKAKELSFTPYSQPS-PVPVQLSNLSYDQWFGISFKDQRGIIPNES-RFVIKPFPLGYLFCQPVFLHLItANGEEKNYDFEPSLFDFKNV-ELG 137
                 57899**************9.**************************8876.9*********************999***************998.589 PP

                 TTSTT--EEEEEEEEECCETTEEEEEEEEESTTEEEE--TT-----EEES-EESTT-TT--B--EEEEEEEE---TT---EEEEEEEEETTEEEEEEEE CS
        MdoG 101 elpkdlgfaGfrlhaplnkeevkdellvflGASYFRavgkgqqyGlsARglaidtaepkgEeFPaFtefwlerpakeaksltvyAlLdspsvtGayrfv 199
                 +lpk+lgf+Gfr+ +  +++  + el++++GASYFR++g gq++GlsAR++a++t+ +++EeFP F+efw+e+p+ke++sl +yAlLd++s+tGa++f 
  CCG92708.1 138 KLPKNLGFSGFRVFYDSKEKGGWLELFSIVGASYFRSLGLGQTWGLSARAIAVNTTGSSKEEFPYFREFWIEEPKKEDRSLSFYALLDGESLTGAFHFL 236
                 9*****************9999***************************************************************************** PP

                 EE-SSSEEEEEEEEEEESS--S-EEEEEEEE-EEEBTTB--SS--S-S-EES--EEEEE-TTS-EEEEE----SS-EEEEEE.EES--EEEEE-----G CS
        MdoG 200 irpgeetvvdveatlflRkdveklGiapltSmflfgendrrkaddfrpevhDsdgLliatgngewiwRpLnnpkklqvssfa.denpkGFGLlqrdref 297
                 ++pge+++v++e  +flRk+veklGiapltSmfl gen++  ++ ++pe hDsdgL+++ ++gewiwRpL+np+  +   f    ++ GFGL+qrdr+f
  CCG92708.1 237 FSPGETSKVEIENYIFLRKTVEKLGIAPLTSMFLQGENSPLLYNPLHPEEHDSDGLSLQLDTGEWIWRPLQNPPFFSSFDFPiRGKLLGFGLMQRDRNF 335
                 **************************************************************************9888888525689************ PP

                 GGT--TTT-GGG--EEEEEESS---EEEEEEEE---SSTTS--EEEEEEESS---TT-EEEEEEEEEEES-GGGGT.TSBEEEEEEEEESSTT-TT--S CS
        MdoG 298 esYqDlearYekRPslwvepkgdwgkGaveLveiptddEtnDNivafWvpeeplkageelefaYrltwgeeepkaeeplarvvatrvgkgeekkekrke 396
                 ++Y+ l  +Ye+RPs+w+ p++ w+ G+veLve+p+++Et+DNiv+++v ++p+ +++++++aY++ wg++  +  ++++rvv+tr ++ +  k+    
  CCG92708.1 336 DHYKSLLLHYESRPSAWIVPSQGWEGGHVELVELPSTTETKDNIVCYFVSNTPALSQKQFHYAYTIFWGRDVIA-GSEIGRVVSTRYAQLD--KTI--- 428
                 ***********************************************************************987.779**********932..234... PP

                 EEEEEEEEE-TTGGGS-T---EEEEEE-TT.EEEEEEEEEETTTTEEEEEEEEEES-TS-EEEEEEEEETTCEEEEEEEE CS
        MdoG 397 skkfvvdfegealekleeeeveaevtasag.eivessvernpetkgwrlvfdlepedeepvelravLkkgekalsetwly 475
                  ++++vdf  + +++    + ++ + + +g ++ e ++ern+  +g+rl+f+++++++ p+ l+a+L++++ +l+etw y
  CCG92708.1 429 -REYIVDFFIPGFSEGL--DPQPILLVGEGaKLIELKIERNSYVNGFRLSFKIQRQEAGPIPLKAYLEAKDFPLTETWDY 505
                 .49*********96433..589999999999***********************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3760.01
//
Query:       CCG92709.1  [L=511]
Description: Periplasmic glucans biosynthesis protein G [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     5e-129  431.3   0.0   5.8e-129  431.1   0.0    1.0  1  MdoG        Periplasmic glucan biosynthesis protein, MdoG
  ------ inclusion threshold ------
       0.25   11.7   0.0       0.49   10.8   0.0    1.4  1  NADHdh-2_N  NADH dehydrogenase subunit 2 N-terminal


Domain annotation for each model (and alignments):
>> MdoG  Periplasmic glucan biosynthesis protein, MdoG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  431.1   0.0  6.5e-133  5.8e-129       4     474 ..      37     506 ..      35     509 .. 0.96

  Alignments for each domain:
  == domain 1  score: 431.1 bits;  conditional E-value: 6.5e-133
                 HHHHHHHHHHHTS-----------------HHHHTT-EE-GGG-BTTTSSSS-EEEEEE-BTTB-S-BEEEEE-SS-EEE----GGGEE-TTS---TTT CS
        MdoG   4 etvkekaralaakpyaapeeelpealakldydqyrkirfrpekalwkeeklpfevqffhlgllfkepvkinevedgkareiaydpslFdygkekkakel 102
                 e++k kar l++ p+++p+++lp+ l+kl+y q+++irf+ +++lw+ee+lpfe+qf+hlg++fk pv+i+ev +g+ ++i++ ++ F yg++ ++k +
  CCG92709.1  37 EEIKIKARGLSNLPFREPRSRLPSWLEKLSYAQWEAIRFDANSSLWREENLPFEIQFYHLGSIFKMPVTIFEVVRGQEKKIEFLEKSFFYGPSIEKKPI 135
                 678899********************************************************************************************* PP

                 STT--EEEEEEEEECCETTEEEEEEEEESTTEEEE--TT-----EEES-EESTT-TT--B--EEEEEEEE---TT---EEEEEEEEETTEEEEEEEEEE CS
        MdoG 103 pkdlgfaGfrlhaplnkeevkdellvflGASYFRavgkgqqyGlsARglaidtaepkgEeFPaFtefwlerpakeaksltvyAlLdspsvtGayrfvir 201
                 ++d+gfaGf ++ + ++++++  ++ flGA++F+ +  gq+ G++AR +ai+t++++gEeFP F+efwl +p+ke+++l +y+++dsps+t a rf i 
  CCG92709.1 136 ERDIGFAGFSVYSSDRQKNEYCMIAKFLGACFFQGLPCGQVPGITARTIAINTGLADGEEFPFFREFWLVKPKKEDSELELYSIVDSPSITQACRFIIL 234
                 ************99999999999*************************************************************************997 PP

                 -.SSSEEEEEEEEEEESS--S-EEEEEEEE-EEEBTTB--SS--S-S-EES--EEEEE-TTS-EEEEE----SS-EEEEEEEES--EEEEE-----GGG CS
        MdoG 202 p.geetvvdveatlflRkdveklGiapltSmflfgendrrkaddfrpevhDsdgLliatgngewiwRpLnnpkklqvssfadenpkGFGLlqrdrefes 299
                   g +tv++++++lf+R++ +k+Giapl++mf +gen ++  +d+rp+vh++dgLlia+ +g+w+w pL+np++l ++++a+ ++ GFGL+qr+r +++
  CCG92709.1 235 SeGFSTVCKIDTQLFFRSSPKKIGIAPLSAMFEYGENGPKVLSDYRPQVHEADGLLIASATGDWTWTPLENPSRLVLKEIAKGQLLGFGLVQRNRLYDH 333
                 759************************************************************************************************ PP

                 T--TTT-GGG--EEEEEESS--.-EEEEEEEE---SSTTS--EEEEEEESS---TT-EEEEEEEEEEES-GGGGT.TSBEEEEEEEEESSTT-TT--SE CS
        MdoG 300 YqDlearYekRPslwvepkgdw.gkGaveLveiptddEtnDNivafWvpeeplkageelefaYrltwgeeepkaeeplarvvatrvgkgeekkekrkes 397
                 YqD +  +++ Ps+wv+ ++ + ++G+veLve+p +d+ n Ni  fW+p++++ ag++l+f+Y+++w + e  ae +l++v++ rv + +     ++ +
  CCG92709.1 334 YQDIHRSFQDMPSAWVQLNSGFlEDGRVELVEVPLKDDLNKNILLFWTPSKTPFAGQSLSFSYSISWLRGEVPAEGKLGKVISARVDRTK----ISQGK 428
                 *****************88764399********************************************99988999*********9943....34567 PP

                 EEEEEEEE-TTGGGS-T---EEEEEE-TT.EEEEEEEEEETTTTEEEEEEEEEES-TS-EEEEEEEEETTCEEEEEEE CS
        MdoG 398 kkfvvdfegealekleeeeveaevtasag.eivessvernpetkgwrlvfdlepedeepvelravLkkgekalsetwl 474
                 +++++ f+ge+le+ ++  ++++v++ +g e+  ++v + +++k+  l ++++++++ep+ ++  L+k++++l+e w+
  CCG92709.1 429 TAVLLSFKGESLEENAALGFNPVVHVLSGgELLYATVGWEAQEKTALLEVQIQENGREPLRVEGWLEKKGNKLTERWY 506
                 79**********988776799999987777***********************************************6 PP

>> NADHdh-2_N  NADH dehydrogenase subunit 2 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.5e-05      0.49      45      76 ..     224     255 ..     216     265 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.5e-05
  NADHdh-2_N  45 swtqaikmlvilsglallcmldhrisyrsssl 76 
                 s+tqa +++++  g++ +c +d ++ +rss  
  CCG92709.1 224 SITQACRFIILSEGFSTVCKIDTQLFFRSSPK 255
                 78***************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3552.35
//
Query:       CCG92710.1  [L=130]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.048   13.8   0.0      0.066   13.3   0.0    1.2  1  Disulph_isomer  Disulphide isomerase


Domain annotation for each model (and alignments):
>> Disulph_isomer  Disulphide isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.7e-06     0.066      36      74 ..      11      49 ..       2      70 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.7e-06
                    SEEEEEEE-SSHHHHHTHHHHHHHHHHH-S--SEEEEEE CS
  Disulph_isomer 36 gttlvvvNSvCGCaagaaRpavklalekekkpdklvtvF 74
                    +  l++  S+C C   +aR a+++a +++ +p+ ++  F
      CCG92710.1 11 KERLLFYASLCSCEEKEARQALEEAFSSADNPEGVFDTF 49
                    45699999************************9776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 867.20
//
Query:       CCG92711.1  [L=692]
Description: Glucans biosynthesis glucosyltransferase H [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-11   44.1   0.0      4e-11   42.7   0.0    1.7  2  Glyco_transf_21  Glycosyl transferase family 21
    4.4e-11   43.1   1.3    4.4e-11   43.1   1.3    2.7  3  Glyco_trans_2_3  Glycosyl transferase family group 2
    1.8e-06   27.9   0.0    2.7e-06   27.3   0.0    1.3  1  Glycos_transf_2  Glycosyl transferase family 2
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.021   14.7   0.0    1.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   8.9e-15     4e-11       8     171 ..     167     343 ..     161     345 .. 0.81
   2 ?   -3.1   0.0       1.1   4.8e+03     107     123 ..     442     458 ..     430     460 .. 0.77

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 8.9e-15
  Glyco_transf_21   8 vsgdpvgvnpKvnnllqalea..akydllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaaleaafl....ntlagvlqak 94 
                      +   +v ++ K  n++  +++  a y++l+++D+d ++  +++ +l++ +e+ p vglV+ +p +++a++l +++e+       +++a+ + + 
       CCG92711.1 167 YRVRRVRLKKKSGNIAEFCRRwaAYYKYLIVLDADSLMGGHTMIRLVEIMESnPSVGLVQTVPKAVGASSLFSRIEQFSShllgSMFAAGIHY- 259
                      5566788999**********9999**************************999**********************999863344444333333. PP

  Glyco_transf_21  95 l.sglgfavGksmalrreaLeaiGGfealadeL.......AeDyalgkllraaGlkvvlspapiaqtsvpr.rsslrallaRqlrW 171
                      +  g g  +G   ++r+e + ++ G+ +l+d L         D++ ++llr+ G++v+l+ +  +  s ++   +l + l+R  rW
       CCG92711.1 260 WqLGDGQYWGHNAIIRTEPFIKYCGLPKLSDRLpfggeilSHDFVESALLRKSGYSVWLAYEL-E-DSYEElPPTLLDELKRDRRW 343
                      325779***********************9985333333389****************99984.4.45555544666667888777 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.1
  Glyco_transf_21 107 alrreaLeaiGGfeala 123
                      ++  + Le++GG++ l 
       CCG92711.1 442 VIWARELEKYGGLKNLL 458
                      5556789******9886 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   2.2      0.85   3.8e+03     159     195 ..      29      72 ..       2      75 .. 0.44
   2 !   43.1   1.3   9.8e-15   4.4e-11       2     192 ..     195     429 ..     194     444 .. 0.64
   3 ?   -2.4   0.8      0.81   3.6e+03     161     177 ..     527     540 ..     482     557 .. 0.47

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.85
  Glyco_trans_2_3 159 lgsllwsalp......lhlallllfsl.lalalvlllllllaal 195
                      +  ++++ lp      l +a+ +lf++ + ++ + l+ +++ +l
       CCG92711.1  29 ASEFMAEILPykgsnpLEIAIIILFGIlFGWISIGLWTAIAGFL 72 
                      33333344446666664445555555412344444444444443 PP

  == domain 2  score: 43.1 bits;  conditional E-value: 9.8e-15
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaaelas.pevaivqgpvlvmnvanwleelaalf...faedhgkdilvrealgrvvp....svGsgaflrrsalq.. 85 
                       ++lDaD+++  +   ++++ ++s p v++vq+   +++ +++++++  +              ++++++         +G++a++r + +   
       CCG92711.1 195 LIVLDADSLMGGHTMIRLVEIMESnPSVGLVQTVPKAVGASSLFSRIEQFSshlL------GSMFAAGIHYWQLgdgqYWGHNAIIRTEPFIky 282
                      689********************66*******99999989999988888653322......223333444433335559**********98745 PP

  Glyco_trans_2_3  86 ....evg.gwdgdessvsEDfdmglrlqrkGyrvrfvpes.lvkekspltlraalrQrkRwayGc...el...eklil...lvrll.......g 157
                          +++ + ++  + +s Df  +  l++ Gy v ++ e    +e+ p+tl ++l++ +Rw +G+   +             ++++       +
       CCG92711.1 283 cglpKLSdRLPFGGEILSHDFVESALLRKSGYSVWLAYELeDSYEELPPTLLDELKRDRRWCQGNlqhLRlifS---KglfIFNRFlflngvmA 373
                      555533364445599*******************999777788*********************7533113332...02222233311111122 PP

  Glyco_trans_2_3 158 ylgsllwsalplhlallllfslla...........................lalvlllllll 192
                      y   +lw +++++ +l       +                           +a++l+l++ll
       CCG92711.1 374 YGSAVLWGGFLVLTTLE------SllhifivpnyfpqglslfpswpvfhadWAALLFLFTLL 429
                      22222333332222211......122233344555566555666666665554444444444 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.81
  Glyco_trans_2_3 161 sllwsalplhlallllf 177
                      ++l+++ ++++   ll 
       CCG92711.1 527 TYLLNPSSFWW---LLP 540
                      11111111111...111 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   6.1e-10   2.7e-06      24     169 ..     126     282 ..      98     283 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 6.1e-10
                      GGCCEEEEEEEEES.-SSCHHHHHGGGCH......C-TTEEEEEESSS-.HHHHHHHHHHHH--SS..EEEEEESSEEE-TTHHHHHHHHHHH. CS
  Glycos_transf_2  24 dpypdfeiivvDDg.StDetveileelak......edprvrvirreenv.Gkagalnaglraatgd..yilflDaDdepdpdwleklvealekd 107
                       + + f+ +++ D+ S+D+  e    +a+      + +++ +  r  +   k+g++ + +r++     y+++lDaD+ +   +  +lve +e +
       CCG92711.1 126 GKLSFFDFFILSDSdSPDNQIEEEIGWANlcrkvnGIGKIFYRVRRVRLkKKSGNIAEFCRRWAAYykYLIVLDADSLMGGHTMIRLVEIMESN 219
                      55556666666666258888887777777888888889999999999998************777777************************** PP

                      TTCEEEEEEEEEECCCCCCCHC-SS.EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHC CS
  Glycos_transf_2 108 gadvvlgqrprifgetdeiernkrv.generlyfkerkrslkgnlsfeigsaallrrealeel 169
                      +  + ++++p+  g +  ++r +++ ++     f  + + ++ +   ++g++a++r e + ++
       CCG92711.1 220 PSVGLVQTVPKAVGASSLFSRIEQFsSHLLGSMFAAGIHYWQLGDGQYWGHNAIIRTEPFIKY 282
                      *************************999999***************************99875 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.7e-06     0.021      70     125 ..     172     230 ..     157     258 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.7e-06
  Glyco_tranf_2_3  70 lgstgksralnealravk..sdlvllvDdDtvvePdtlkrllqff.ltpkvgavgtpvf 125
                       + + ks +++e +r+ +  +++++++D+D++ + +t  rl+ ++   p+vg v+t   
       CCG92711.1 172 VRLKKKSGNIAEFCRRWAayYKYLIVLDADSLMGGHTMIRLVEIMeSNPSVGLVQTVPK 230
                      45567999*******86656*************************9999******8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 4416.54
//
Query:       CCG92712.1  [L=159]
Description: putative hydrogenase maturation protease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-16   59.3   0.0    3.9e-16   59.1   0.0    1.1  1  HycI      Hydrogenase maturation protease


Domain annotation for each model (and alignments):
>> HycI  Hydrogenase maturation protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   2.2e-20   3.9e-16       3     127 ..      22     147 ..      20     150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 2.2e-20
                 HHHHHHHHEC--TTEEEEEECT-SGGGHHHHCC-SEEEEEEE--SSS-TT-EEEEECCHHHHHHTTC..CGCCCHCHHHHHHHHH..HCCS--SEEEEE CS
        HycI   3 vvekLkrryefkenvtviDgGtqglelvgtleeadkliivDavdfglepGevkiikddevpkklkak.kmsaHqlplaevlklle..ekgeipkevill 98 
                 ++++L+  ++++  v++iD Gt+g++l++ lee+d li++D    g +pG++ ++ ++++ k l +    ++H+    ++lk  +   k+++pk++ + 
  CCG92712.1  22 LIRRLAS-LHPPLPVKLIDYGTSGFSLLDDLEEYDSLIVIDGLMSGSTPGTIFMVGGEQLEKLLETGpYADLHSFRWDDALKWGKwlYKERFPKNIKIY 119
                 5666666.556667***********************************************987663148***********9765225678******** PP

                 EE--S-BST.CCS--HHHHCCHHHHHHHC CS
        HycI  99 gvqpesledvgielseevkkavekaveli 127
                  v+ +++   gi+lse+vk+a+e++ve+ 
  CCG92712.1 120 LVEVKEVGY-GIGLSEPVKEAIERLVEMF 147
                 ******998.****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1093.31
//
Query:       CCG92713.1  [L=113]
Description: putative hydrogenase nickel incorporation protein hypA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-28   98.9   1.0    1.8e-28   98.8   1.0    1.0  1  HypA      Hydrogenase/urease nickel incorporation, metallocha
  ------ inclusion threshold ------
      0.091   12.9   0.8       0.19   11.8   0.8    1.4  1  DUF1272   Protein of unknown function (DUF1272)


Domain annotation for each model (and alignments):
>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   1.0     2e-32   1.8e-28       1     112 []       1     112 [.       1     112 [. 0.97

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 2e-32
                 XCHHHHHHHHHHHHHHHHCCTT..EEEEEEEEEETTCT--HHHHHHHHHHHHCC.TTTT-EEEEEEE--EEEETTTS-EEECHHHHHS-TTTSSS-EEE CS
        HypA   1 MHElsiaesivevveeeakeaaarkvtkvkvevGelsgvepeaLefafellaegtvlegaeLeieevpvkvrCreCgkefeleekalrCpkCgsadvei 99 
                 MHEls++es+v+++ee+a e +++kv+k+ ++ G l+ +epea++f f+++++gt++egaeL+iee+ vk++C +C+ke+ + +  ++Cp+C++  +  
  CCG92713.1   1 MHELSLCESLVSLLEEKALELGFHKVKKIVLKTGPLALIEPEAMKFSFSIASKGTIAEGAELHIEEILVKAYCLSCQKEGFVGKIGESCPNCEGVMILS 99 
                 ******************9999**********************************************************98864678*********** PP

                 EESSSEEEEEEEE CS
        HypA 100 vsGeellvksiev 112
                  +G+el+v+siev
  CCG92713.1 100 EEGKELTVDSIEV 112
                 ***********97 PP

>> DUF1272  Protein of unknown function (DUF1272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8   2.1e-05      0.19      30      51 ..      71      96 ..      69      98 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.1e-05
     DUF1272 30 tFCaeCaeevl....envCPncgGel 51
                ++C +C +e +     + CPnc G +
  CCG92713.1 71 AYCLSCQKEGFvgkiGESCPNCEGVM 96
                69****998553333789*****965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 874.09
//
Query:       CCG92714.1  [L=230]
Description: Deoxyinosine 3'endonuclease/endonuclease V [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-34  119.1   0.0      2e-34  119.0   0.0    1.2  1  Endonuclease_5  Endonuclease V
    9.6e-05   21.9   0.0    0.00013   21.4   0.0    1.2  1  DUF99           Protein of unknown function DUF99


Domain annotation for each model (and alignments):
>> Endonuclease_5  Endonuclease V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   0.0   2.3e-38     2e-34      45     195 ..      65     214 ..      11     216 .. 0.92

  Alignments for each domain:
  == domain 1  score: 119.0 bits;  conditional E-value: 2.3e-38
                     TTTEEEEEEEEEEE--S-SSTT-CHHHCHHHHHHHHCC-SS--SEEEEEC-SSSSTTS--HHHHHHHHHTS-EEEEESS-SSSBE----SSTTEE CS
  Endonuclease_5  45 pslevvekavavvklsfpYipgfLaFRElpvllkaleklkqkpdvllvDGnGiaHprrlGlAshlGvlldlptiGvaKsllvgkveepekekgsv 139
                     p+ + v++    +++ f+Yipg+La R  p+l ka+  l+ +p++l+v+     Hp r+GlA hlG  ld+pt+G++++ l+ k + p+k++g+ 
      CCG92714.1  65 PDGQ-VKTFAISERAFFDYIPGLLALRDGPLLEKAVVGLNLRPELLFVNATSRDHPHRAGLALHLGYKLDIPTVGITRKPLIAKGALPGKNRGDR 158
                     4554.34444556778******************************************************************************* PP

                     EEEEETTEEEEEEEESSTTS--EEEEEECSS-HHHHHHHHHHCS-T-SS-HHHHHH CS
  Endonuclease_5 140 vplvsegevigaalrtkknvkpiyvSvGhrisletalelvlallkkyrlPepirqA 195
                     ++l   +e+++  lrt++n  p+ v +G r++ eta+e+vl+++ kyr Pep+r+A
      CCG92714.1 159 SELRIGNETVAFWLRTQENKAPLVVHPGYRLDWETAIEIVLRYTLKYRTPEPLRLA 214
                     ****999***********************************************99 PP

>> DUF99  Protein of unknown function DUF99
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.5e-08   0.00013      91     181 ..     132     220 ..     127     222 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.5e-08
                 H---EEEEESS---HHHHHHCCT.TSTTHHHHHHHHHHC.---EEETT....EEEEE.ESS-HHHHHHHHHHC-SSSSS-HHHHHHHHHHHH CS
       DUF99  91 tglPviavtreepdlgklekaLrkhfpdeeeRlelieklgerieevektgeelyvra.vGieleeaaklvrkltlegriPEPlRvAhliAsa 181
                 +++P++ +tr++      + aL  + ++++  l++ ++      ++++++ +l+v+  + ++ e+a ++v ++tl+ r+PEPlR+A+ +A+ 
  CCG92714.1 132 LDIPTVGITRKPLI-A--KGALPGKNRGDRSELRIGNETVAFWLRTQENKAPLVVHPgYRLDWETAIEIVLRYTLKYRTPEPLRLARKAARL 220
                 66777777777666.3..5777777777777777777666666666666666666543678999**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1700.56
//
Query:       CCG92715.1  [L=100]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-24   84.7   0.0    3.6e-24   84.5   0.0    1.0  1  GYD             GYD domain
     0.0042   17.3   0.0     0.0054   16.9   0.0    1.2  1  DUF4242         Protein of unknown function (DUF4242)
  ------ inclusion threshold ------
       0.07   13.1   0.1      0.098   12.6   0.1    1.4  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
        0.1   12.8   0.0       0.12   12.6   0.0    1.1  1  DUF4767         Domain of unknown function (DUF4767)


Domain annotation for each model (and alignments):
>> GYD  GYD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0     8e-28   3.6e-24       1      89 [.       4      93 ..       4      95 .. 0.98

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 8e-28
         GYD  1 Yivlvnytdegvkglkdsperreeakealvesl.GgkleslyatlGeyDvvvivEapDdetaaalslalaasGtvrtetlrafteeefde 89
                +i+l+++t+e +k++ + ++  + ++++++e++ G+k++++yatlGeyD+v+ivEa D +++++++++l+++G+  tet+ a++++ef +
  CCG92715.1  4 FIILSRLTPESMKEPSEIKNLSKVVSSKIKEECpGIKWKESYATLGEYDIVDIVEAKDVAEVEKAAMILRGYGKEITETMSAVPWDEFVS 93
                8**************************************************************************************965 PP

>> DUF4242  Protein of unknown function (DUF4242)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.2e-06    0.0054       5      63 ..       8      69 ..       4      76 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.2e-06
                E---TT--HHHHHHHHHHHHHHHGG.....GT-EEEEEEEETTTTEEEEEEE-S-HHHHHHHH CS
     DUF4242  5 rdlpggitaeelaaaaakslavlael....egvqwlrsyvtedkgkvfClyeApdeeavreha 63
                 +l    +++e  ++++ s+ v  ++    +g++w +sy t  +  ++ ++eA+d + v+++a
  CCG92715.1  8 SRLTP-ESMKEPSEIKNLSKVVSSKIkeecPGIKWKESYATLGEYDIVDIVEAKDVAEVEKAA 69
                55444.356666666666666666555568*****************************9987 PP

>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.2e-05     0.098      27      52 ..      42      67 ..      16      83 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
                    EEEEEESSSSSEEEEEEESSHHHHHH CS
  AsnC_trans_reg 27 vecyrvtGdydyllkvvvrdlealer 52
                    +e y++ G+yd++ +v ++d+++ e+
      CCG92715.1 42 KESYATLGEYDIVDIVEAKDVAEVEK 67
                    478*******************9987 PP

>> DUF4767  Domain of unknown function (DUF4767)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.8e-05      0.12      40      92 ..      14      65 ..       8      78 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.8e-05
     DUF4767 40 glkyPsalsegkvklkiavnkqkvslkWsedgkgkadYnvvaiysdneekakl 92
                 +k Ps++++ +  +++++ ++   +kW+e+  +  +Y++v+i   ++ ++ +
  CCG92715.1 14 SMKEPSEIKNLSKVVSSKIKEECPGIKWKESYATLGEYDIVDIVEAKDVAE-V 65
                578899****99999****************************99754444.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 668.66
//
Query:       CCG92716.1  [L=45]
Description: hypothetical protein MFUM_740001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       152  (0.00847788); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 329.69
//
Query:       CCG92717.1  [L=46]
Description: hypothetical protein MFUM_740002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 348.22
//
Query:       CCG92718.1  [L=467]
Description: 2-methylcitrate dehydratase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-117  392.9   0.0   1.7e-117  392.7   0.0    1.0  1  MmgE_PrpD  MmgE/PrpD family
  ------ inclusion threshold ------
      0.058   13.5   0.0       0.14   12.2   0.0    1.6  1  TetR_C_27  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> MmgE_PrpD  MmgE/PrpD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.7   0.0  1.9e-121  1.7e-117      11     437 ..      17     448 ..       9     450 .. 0.96

  Alignments for each domain:
  == domain 1  score: 392.7 bits;  conditional E-value: 1.9e-121
                 -----H..HHHHHHHHHHHHHHHHHHHHTT-HHHHTT-SSSTT-B-TT-EE-TTSS-EE-HHHHHHHHHHHHHCTS-S-BEESSSEE-GGGGHHHHHHH CS
   MmgE_PrpD  11 lryddlpeevverakrlilDtlGvalaglrepavkkaleavkgtggpggatvigtgerlspvkAAfvnGaaihalDfdDthlaaelhhpsdvlpaalAv 109
                 l  +d +  ++e+a  ++ D+l++ + g+++++++    + + +  pg++ ++gt  +++p +A +++++a+++lD++D +la+e++hpsd+l++++A+
  CCG92718.1  17 LHSKDFSVSAIENAYLCFWDALACLFHGVKSEECRRR--MTPLFDSPGTCVIPGTLLKADPLNASYAISCAVRWLDYNDAWLAQEWGHPSDNLGGIFAC 113
                 45567778**************************965..5599999***************************************************** PP

                 HHHHHHH......BHHHHHHHHHHHHHHHHHCCC--SCCCT.B-THHHHHHHHHHHHHHHTT--HHHHHHHHHHHHCT-B-BSGGGSTTT--CHH.CHH CS
   MmgE_PrpD 110 Aealgas......gkdlLtAivvGyEvqgrlglalsfnhygfhdtvtlgtfgaaaaaakLlgLdaeqianAlgiaatqaaglrqyrhagtkskkl.waa 201
                  +++++       g ++L+ +++++E+qg l l +s+n+ g +d+v+++ +++aa + ++lg  + ++++Al++ ++++a lr yrha+++++++ waa
  CCG92718.1 114 TQYMERIkkekisGLKILEWMIKAHEIQGILSLKNSLNRFG-LDHVAFVRVASAAIVTSILGGGEREVMSALSNSFVDGAPLRIYRHAPATGWRKsWAA 211
                 ******999***99***************************.********************************************************* PP

                 HHHHHHHHHHHHHHHTT---.TTTTT-TTTSHHHHHSTT-----S.S-SS...SHHHHC-B---SSS-CCCHHHHHHHHHHHHHHCCTCCCEEEEEEEE CS
   MmgE_PrpD 202 GdAarnGveaallAkrGftG.psdilegewGflavlsggkdlelevkplgegesweienvlfKpypaerhthaaidaalklraelklkpddIesieirt 299
                 +dA+r++v +a++A +G+++ p  +   +wGf ++l++g+++  + +pl    ++++envlfKp+pae+h+++ai+aal+lr+e+  k+++I++iei+t
  CCG92718.1 212 ADAVRRAVWLAFMAIKGEMAyPNVLSLPQWGFSDALLRGAPIVID-RPLS---HFVMENVLFKPFPAEYHSQSAIEAALELREEVLPKLEKIRRIEIHT 306
                 ********************8888888******************.9999...9********************************************* PP

                 -HHHHHHC---S---SHHHHCT-CCHHHHHHHHCS---CCCCSCCCCTSCHHCCHHCCEEEEE-HHHHHHH..TTT---...EEEEETTS-B---EEES CS
   MmgE_PrpD 300 seaalriigkkgppenradadhSlqyvvAvalldgrvtledfederladpevqaLrekvevvedpeltady..pekrsi...vvvvlkdggrtleerve 393
                 +  a+rii k+gp++n+ad+dh+l y+vA+all+grvt + +ede+++dp+++aLr+++ + ed+++t+dy  pek+++   ++v+++dg+ t ++++ 
  CCG92718.1 307 QLPAIRIIHKQGPLHNPADRDHCLEYIVAIALLYGRVTQDLYEDEVARDPRIDALRKRMVTIEDKAYTSDYydPEKMAVpnaIQVFFEDGTATIKKEIL 405
                 *****************************************************************************99******************** PP

                 S-TTS.GGHHHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHSH CS
   MmgE_PrpD 394 ypkGh.prnplsreeleeKfrrlaegvlseeeaereeileevlel 437
                 yp+Gh  r+++ ++ l++K ++ +++ +s  e+++++il+  l++
  CCG92718.1 406 YPLGHpKRRNEFQKVLLQKIESSLDNLFS--EERKKQILDLYLNK 448
                 *****989999999***************..77777777766665 PP

>> TetR_C_27  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.5e-05      0.14      49      95 ..       6      52 ..       4      56 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.5e-05
                HHHHHHHHHHHHHCT-STT--HHHHHHHHHHHSGGGTSHHHHHHHGG CS
   TetR_C_27 49 eeqlaeIireGvaaGeFkaadpeaaaravfdatarfhhPalaaewsd 95
                +++l+eI + + ++ +F+++ +e+a  +++da+a++ h +  +e+++
  CCG92718.1  6 DQVLEEICSYALHSKDFSVSAIENAYLCFWDALACLFHGVKSEECRR 52
                6789**********************************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3306.01
//
Query:       CCG92719.1  [L=229]
Description: D-ribulose-5-phosphate 3-epimerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-82  274.2   0.0    5.6e-82  273.9   0.0    1.0  1  Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
     0.0003   20.6   0.0       0.57    9.9   0.0    2.7  3  QRPTase_C       Quinolinate phosphoribosyl transferase, C-ter
     0.0028   17.2   0.2        0.2   11.1   0.1    2.1  2  PcrB            PcrB family
  ------ inclusion threshold ------
      0.062   12.7   0.1       0.18   11.3   0.1    1.7  2  His_biosynth    Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.9   0.0   1.2e-85   5.6e-82       1     198 []       9     209 ..       9     209 .. 0.98

  Alignments for each domain:
  == domain 1  score: 273.9 bits;  conditional E-value: 1.2e-85
                     EEEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSS-B-B-HHHHHHHGGG...E-S-EEEEEESSSHHHCHHHHHHCT-SEEEEE-ST-T CS
  Ribul_P_3_epim   1 kiapSllsadfarlgeevkaveeagadllHvDvmDghfvpNltigplvvealrkl...telpldvHLmveevdrivpefaeagasiisvHaEale 92 
                     kiapS+lsadf+rl+ + k++ +agad+lH+DvmDghfvpN+tigpl+vealr+l   t + ldvHLm+e++dr++p+f++aga+ii+vH+E+++
      CCG92719.1   9 KIAPSILSADFSRLEAHAKEALDAGADWLHIDVMDGHFVPNITIGPLIVEALRNLkkaTGTTLDVHLMIENPDRYIPDFVKAGADIITVHVETCP 103
                     69**************************************************9997767789********************************* PP

                     THHHHHHHHHHTTSEEEEEE-TT--GGGGTTTCCC-SEEEEESS-TT-SS----CCHHHHHHHHHHHHHHHT---EEEEESS--TTTCHHHHHHT CS
  Ribul_P_3_epim  93 hlkrtiqeikeaGakaglvlnpatplealeyllekldlvllmsvePgfgGQkFipevlekikkvrklidekeldlkievDGGvkldnieqiaeag 187
                     hl+rt+q i+++G++ag+ lnpatpl +le+++   dl+l+msv+PgfgGQ++ip+ + k++++r+++d+ + + ++e+DGGvk +n+++i++ag
      CCG92719.1 104 HLHRTVQLIHDLGVRAGVTLNPATPLVSLEEIIWYADLILIMSVNPGFGGQEYIPTSTRKVERLRQMLDAVKSKAWLEIDGGVKPANATEIVRAG 198
                     *********************************************************************************************** PP

                     --EEEESHHHH CS
  Ribul_P_3_epim 188 advlVagsavf 198
                     advlVagsavf
      CCG92719.1 199 ADVLVAGSAVF 209
                     **********9 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.16   7.4e+02      91     111 ..      24      44 ..      18      51 .. 0.83
   2 !    7.1   0.0   0.00096       4.3      66     128 ..      56     121 ..      32     148 .. 0.80
   3 !    9.9   0.0   0.00013      0.57     110     158 ..     163     208 ..     153     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.16
                 HHHHHHHHHT-SEEEEES--H CS
   QRPTase_C  91 eeleevleaeadiimLDnfsv 111
                 + ++e+l a+ad   +D ++ 
  CCG92719.1  24 AHAKEALDAGADWLHIDVMDG 44 
                 6789*************9976 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00096
                 HHHHHHHHHHHHTTTSEEEEEESSHHH.HHHHHHHT-SEEEEES--HHHHHHHHHHHHHHSTT..S CS
   QRPTase_C  66 iveavksvreavdkevkieveveslee.leevleaeadiimLDnfsveelkkaveelkeknkr..v 128
                 ivea++++++a++ ++ + + +e+ +  +   ++a+adii +   +  +l+++v++++    r  v
  CCG92719.1  56 IVEALRNLKKATGTTLDVHLMIENPDRyIPDFVKAGADIITVHVETCPHLHRTVQLIHDLGVRagV 121
                 89******************9*99887267899*********99999*******999877766443 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00013
                 -HHHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHHC CS
   QRPTase_C 110 sveelkkaveelkeknkrvlievSGgvtlenveeyaksgvdvisvgalt 158
                 +ve l++++   ++ + +  +e  Ggv+  n +e+ + g dv+  g+++
  CCG92719.1 163 KVERLRQML---DAVKSKAWLEIDGGVKPANATEIVRAGADVLVAGSAV 208
                 444555555...56677789***********************999886 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0059        27      17      83 ..      78     147 ..      69     150 .. 0.86
   2 !   11.1   0.1   4.6e-05       0.2     173     215 ..     170     212 ..     154     224 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0059
                 S-CHHHHHHHHCTT-SEEEEECSTCHHHHHHHHHHHHHCTSSS-EEEEESSG....GG--TTSSEEEEEEE CS
        PcrB  17 enpdEiveiviesgtDavmigGsqsvtldntvrllkkvsriklPivlepsnv....egvvryaDalFvmsl 83 
                 enpd  +   ++ g+D + +   +  +l +tv+l+++   ++  + l p+ +    e +  yaD++ +ms+
  CCG92719.1  78 ENPDRYIPDFVKAGADIITVHVETCPHLHRTVQLIHDL-GVRAGVTLNPATPlvslEEIIWYADLILIMSV 147
                 678888888899*********999************99.7888899999853333399***********98 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 4.6e-05
                 HHHHHHSSSEEEEESS--SHHHHHHHHCC.SSEEEE-CHHHHHH CS
        PcrB 173 alkkklekarlivGGGirsaEkAkevvea.ADvivvGnvveekd 215
                  l ++ +ka l + GG++   +A e+v+a ADv+v G +v + +
  CCG92719.1 170 MLDAVKSKAWLEIDGGVKP-ANATEIVRAgADVLVAGSAVFKGN 212
                 45667788899999**975.57999***99********998755 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.31   1.4e+03      41      54 ..      32      45 ..      22      98 .. 0.66
   2 ?   11.3   0.1     4e-05      0.18      61     107 ..     167     210 ..     157     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.31
                  HT-SEEEEEEHHHH CS
  His_biosynth 41 egadelhvvDldaa 54
                  +gad+lh+  +d+ 
    CCG92719.1 32 AGADWLHIDVMDGH 45
                  55555555444444 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4e-05
                   HHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH CS
  His_biosynth  61 nldlveeiaeevfipvqvGGGIrsledveelleagadkviigtaavk 107
                     +++ ++ ++  + ++++GG++  + ++e+++agad ++ g+a++k
    CCG92719.1 167 LRQMLDAVKSK--AWLEIDGGVKPAN-ATEIVRAGADVLVAGSAVFK 210
                   33444444444..899*******999.***************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1607.54
//
Query:       CCG92720.1  [L=354]
Description: NADPH dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-73  248.1   0.0    1.8e-73  247.7   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil
  ------ inclusion threshold ------
      0.048   12.7   0.1       0.21   10.6   0.0    1.9  2  Dus           Dihydrouridine synthase (Dus)


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.7   0.0     2e-77   1.8e-73       1     338 [.       3     337 ..       3     340 .. 0.90

  Alignments for each domain:
  == domain 1  score: 247.7 bits;  conditional E-value: 2e-77
                   CCCS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEE CS
  Oxidored_FMN   1 kLFkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvv 97 
                   kLF+ + i ++  knRi  +pm++++a++ g v e + + +   ra ++v+l+++ea++v+p++++++ + giw++ +ie + ++++ + ++g+ ++
    CCG92720.1   3 KLFESFCIRSVRFKNRIFLSPMCMYSAEE-GFVNE-WHLVHLGSRAVGGVSLVMVEATAVSPEGRITPFDSGIWSDRHIEPFIPIVNFISKQGAVAG 97 
                   69***********************8865.64655.99999999***************************************************** PP

                   EEEE--GGGS..SCSTCEC..........SS.ESSSSSTTT-.S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TT CS
  Oxidored_FMN  98 vqlwhlGreakseyladqe........vdspsdpvaldaqeeesaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspk 186
                   +q++h+Gr+a +++    +           p++p+ ++     + ++  + e+t+++i+ + ++f++A++ra++Agf + eih a+GYLl++Flsp 
    CCG92720.1  98 IQIAHAGRKASTDKPWFGGapvppernGWIPIAPSPIPF---DALSPT-PIEMTHKDIHRVEEDFARATQRARKAGFQVLEIHMAHGYLLHEFLSPL 190
                   **********99998888855555544333444444333...455666.66********************************************** PP

                   T----STTSSSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEECE--STTS--HHHHHHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCCTTH CS
  Oxidored_FMN 187 snkrtDeygGslenRarFllevvdaVkeavgeer.vgyRlSpedvvekgldfaetaqkivllkelekrlkdgkklalvhaaeprkrgagsvrteqek 282
                   snkrtDe+gGslenR+rF+l v +aV+    ++  v++R+S++d  ++g d    + ++  lke++++l+d++++ l+++  p+  +  +v      
    CCG92720.1 191 SNKRTDEFGGSLENRMRFPLIVAKAVRSLWPQDLpVFVRISASDWHKDGWDLEQSISFCHKLKEIGVDLIDCSSGGLINVPIPVGSN-YQV-----P 281
                   **********************************************999999999*************************9965543.333.....3 PP

                   HHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCC CS
  Oxidored_FMN 283 ntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkg 338
                   +   +++++   + +vg+i+d+ +a+ i++e++ad v+++Re+l++p +v k+++ 
    CCG92720.1 282 FSASIRKQVGIMTGAVGMITDPWQAEGILSENKADCVFLARELLREPYWVLKAANA 337
                   4479**********************************************999865 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1     0.091   8.2e+02     133     158 ..     151     176 ..     142     177 .. 0.83
   2 ?   10.6   0.0   2.4e-05      0.21     177     224 ..     285     332 ..     280     349 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.091
                 SSTTTC.HHHHHHHHHHCT-SEEEEE CS
         Dus 133 iddeeenalelakiveaaGaqaltvH 158
                 i+  ee+  ++ +++ +aG q l +H
  CCG92720.1 151 IHRVEEDFARATQRARKAGFQVLEIH 176
                 55567788899999*********999 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 2.4e-05
                 HHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHH CS
         Dus 177 evkqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfa 224
                 +++++v i   a G I+d+ +a+ il+e+ ad v  +r+ l++P+ + 
  CCG92720.1 285 SIRKQVGIMTGAVGMITDPWQAEGILSENKADCVFLARELLREPYWVL 332
                 69999999999*********************************7664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2485.43
//
Query:       CCG92721.1  [L=265]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1919.89
//
Query:       CCG92722.1  [L=362]
Description: Serine-glyoxylate aminotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-23   83.7   0.0    1.6e-23   83.3   0.0    1.1  1  Aminotran_5  Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   8.7e-28   1.6e-23      32     287 ..      26     272 ..       7     297 .. 0.88

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 8.7e-28
                  SSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEE.ESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBE CS
  Aminotran_5  32 rsvhhlgkeatkaveearekvaelinaeseeeiif.tsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeld 128
                   +++h++k++++ ++e+++ +++l+ ++    + f ts++   +++++++l      +++++   ++  +    w ++a r+g + ++++  +++ +d
   CCG92722.1  26 PMIGHRSKDFQALYREVQSGLQKLFYTQR--PVFFsTSSAWGVMEAAIRNL-----VQKKVLCCMNGAFSDK--WFDVAIRCGKEADKLQYPWGKPID 114
                  3899***********************96..45551444444899999999.....45789***********..************************ PP

                  GGGHHHH--.TTEEEEEEESBETTTTEB--HHHHHHHHHH.TT-EEEEE-TTTTTTS---HHHHTESEEEEETTT.TTSSTT-EEEEEEHHHHHTS.. CS
  Aminotran_5 129 ldeleklln.ektklvaithvsnvtGtiqpveeigklakk.kgalvlvDaaqavghipidvkklgvDflafsghK.llgPtGiGvlyvrkelleklep 223
                  +++l++ ln + +++v++ h++++tG+++p+ e+++++k+  ++ ++vD ++++   +i +++lg+D++  +++K l  P+G  +  v++++  k+e+
   CCG92722.1 115 PSDLKNRLNsNAYDAVTFIHNETSTGMMNPLFEVAAVMKEfPDVSFIVDCVSSFSVLKIPFDDLGIDVMLTGTQKaLALPPGGALFAVSQKAMAKAEK 212
                  ********96778***************************66*********************************8888***9999************ PP

                  SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH CS
  Aminotran_5 224 lllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyl 287
                  +   g++++  ++++ +  ++++     Tp +  +++l+  +  + e gle+  +++ ++a ++
   CCG92722.1 213 TPARGYYFDFLEFQKNH--DNSMTPS--TPSISLFYALKSKIAEIFEEGLENRYQRHLTMALMT 272
                  *************7777..3333333..***********9999999999998888877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2756.23
//
Query:       CCG92723.1  [L=223]
Description: DNA binding copper response regulator [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-29  101.2   0.1    2.1e-28   98.2   0.1    2.2  2  Trans_reg_C   Transcriptional regulatory protein, C terminal
    2.8e-25   88.6   0.0    4.2e-25   88.1   0.0    1.3  1  Response_reg  Response regulator receiver domain
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.22   11.8   0.0    1.4  1  OKR_DC_1_N    Orn/Lys/Arg decarboxylase, N-terminal domain
       0.12   12.2   0.3        3.8    7.5   0.0    3.1  4  MarR_2        MarR family


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.16     7e+02      45      59 ..     104     118 ..      82     125 .. 0.80
   2 !   98.2   0.1   4.6e-32   2.1e-28       2      77 .]     146     220 ..     144     220 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.16
                  HHHHHHHHHHHHHHT CS
  Trans_reg_C  45 tvdvhisrLRkkLed 59 
                  ++d  ++rLR  ++ 
   CCG92723.1 104 SMDELVARLRALIRR 118
                  678889999998876 PP

  == domain 2  score: 98.2 bits;  conditional E-value: 4.6e-32
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ++++lt+kef+lLelL++ pgrv++r+++ e+vw++++d+ ++ vdv+i++LRkk+++ e +++lI+tvrgvGY++
   CCG92723.1 146 KKIDLTAKEFSLLELLMRTPGRVFTRTQICEHVWNYHFDPGTNLVDVYIQKLRKKIDEFE-EQKLIQTVRGVGYKI 220
                  679*******************************************************66.667**********85 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.0   9.5e-29   4.2e-25       1     111 [.       3     112 ..       3     113 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 9.5e-29
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l+v+D+ ++++ +++ le eg+ +v++++ g+eal +l +  +d  +lDi++pg dG+ +lk +re+  +lp+++l+a+s+  d++e+l+ gadd+
    CCG92723.1   3 ILVVEDEGKICRFIAKGLEAEGF-VVDTCSRGDEALLQLLTTPYDAAILDIMLPGPDGISVLKAVREKGVHLPILLLSARSQTRDKIEGLNSGADDY 98 
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l Kpf+++eL+++l
    CCG92723.1  99 LPKPFSMDELVARL 112
                   ***********997 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.8e-05      0.22       7      76 ..      14      85 ..       9      95 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.8e-05
  OKR_DC_1_N  7 relaealekegfevvgvtstdDllsvieqnsriaavvlsvd...deaaelldeirernedlPvFllaetrtse 76
                r +a+ le+egf v +  + d++l  + + +  +a++l++     +   +l+++re++ +lP+ ll+ +++++
  CCG92723.1 14 RFIAKGLEAEGFVVDTCSRGDEALLQLLT-TPYDAAILDIMlpgPDGISVLKAVREKGVHLPILLLSARSQTR 85
                56889999999877666666666665555.899********9*999999******************988554 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       0.6   2.7e+03      41      53 ..      16      28 ..      16      36 .. 0.75
   2 ?   -2.3   0.0      0.97   4.3e+03      21      31 ..     102     112 ..      96     114 .. 0.79
   3 ?    7.5   0.0   0.00086       3.8       2      29 ..     149     176 ..     148     178 .. 0.93
   4 ?    0.5   0.0      0.13   5.6e+02      42      56 ..     201     215 ..     197     217 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.6
                HHHHHHHTTSEEE CS
      MarR_2 41 ilkrLvaaGLver 53
                i k L+a G+v+ 
  CCG92723.1 16 IAKGLEAEGFVVD 28
                57899****9965 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.97
                 EEEHHHHHHHH CS
      MarR_2  21 dltvgelarrl 31 
                 ++++ el++rl
  CCG92723.1 102 PFSMDELVARL 112
                 38999999998 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00086
                 T--HHHHHHHHHHHCTTTSEEEHHHHHH CS
      MarR_2   2 gltpaqarvLaaLgrrpgrdltvgelar 29 
                 +lt  ++ +L  L r pgr +t +++++
  CCG92723.1 149 DLTAKEFSLLELLMRTPGRVFTRTQICE 176
                 799****************99*****98 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.13
                 HHHHHHTTSEEEEES CS
      MarR_2  42 lkrLvaaGLverrpg 56 
                 +++++++ L+++++g
  CCG92723.1 201 IDEFEEQKLIQTVRG 215
                 689********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1918.59
//
Query:       CCG92724.1  [L=468]
Description: Copper sensor histidine kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.7e-19   68.3   0.0    2.7e-18   66.5   0.0    1.9  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.8e-07   31.1   3.9    2.6e-07   30.5   0.7    2.5  2  HisKA        His Kinase A (phospho-acceptor) domain
     0.0005   20.4   0.5    0.00096   19.5   0.5    1.5  1  HAMP         HAMP domain
    0.00065   19.6   0.4     0.0041   17.0   0.0    2.4  3  HATPase_c_5  GHKL domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.3     6e+03       3      33 ..     216     244 ..     215     260 .. 0.74
   2 !   66.5   0.0     6e-22   2.7e-18       2     108 ..     348     456 ..     347     459 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE CS
   HATPase_c   3 ekrLrqiisnlvdNavkfatkageieveika 33 
                  krL  i++++++ + ++   + ei+++ +a
  CCG92724.1 216 LKRLVTILNEMLGRLEEA--FQREIRLTADA 244
                 679999999999988885..67777776664 PP

  == domain 2  score: 66.5 bits;  conditional E-value: 6e-22
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE.TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikase.ddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                 de+ +r++++n+ dNa++++ ++g i v+++ +  d+  ++++++G+ +p+e++kk+fe+f++ +++t++g +g+GlGl +++++v  ++Gei++  ++
  CCG92724.1 348 DEDLIRRLLWNIFDNAIQYNISGGYIGVSLQLKGtDRCLLQISNSGPVVPEEERKKIFERFYRgKNATEHGISGHGLGLNLCREIVLAHKGEITYLIDE 446
                 8999***************66*********975478***************************999999999************9999******94444 PP

                 TTEEEEEEEE CS
   HATPase_c  99 grGttftftl 108
                 ++  +f + l
  CCG92724.1 447 KGHNQFSLLL 456
                 4455566555 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.13   5.8e+02      38      65 ..     206     231 ..     185     233 .. 0.60
   2 !   30.5   0.7   5.9e-11   2.6e-07       4      65 ..     239     300 ..     236     302 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA  38 keyletiesearrldhlvedlLdlsrie 65 
                 +  +  +    +rl  +++++  l+r+e
  CCG92724.1 206 RLSIPALDPDLKRLVTILNEM--LGRLE 231
                 334444444456888888888..66665 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 5.9e-11
                 HHHHHHHHHHHHHHHHHHHHHHH.HHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA   4 rflagvaHELrtPLsailgnaea.LkregklteelkeyletiesearrldhlvedlLdlsrie 65 
                 r++a+ +HEL+tPL+ ++  +e  L+r+ + + + ++ +  + ++++ l+++ ++lL ls ++
  CCG92724.1 239 RLTADASHELKTPLTILKNELESaLQRT-DIDCQTEKTFLNLYEQVQSLSSITQTLLFLSNLD 300
                 89********************967997.55699999***********************987 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.5   2.2e-07   0.00096       1      53 []     179     232 ..     179     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.2e-07
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCT.TSSSHHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpv.sgrDEiGeLarafNaMldrLre 53 
                 +++r  l P+r+++++ ++i+a  l++rl +   +  + +L+  +N+Ml rL+e
  CCG92724.1 179 WISRKALLPIRQMTSTLEQIRASALHQRLSIpALDPDLKRLVTILNEMLGRLEE 232
                 899****************************99*******************85 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.35   1.6e+03      27      56 ..     234     265 ..     225     284 .. 0.68
   2 ?   -2.3   0.0      0.97   4.4e+03       4      23 ..     311     331 ..     309     339 .. 0.75
   3 !   17.0   0.0   9.2e-07    0.0041       6      92 ..     352     447 ..     346     457 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.35
  HATPase_c_5  27 ekrfIrltvrekk..ksliisieNsyegekkk 56 
                   +r+Irlt+  ++  k+ + +++N+ e+  ++
   CCG92724.1 234 FQREIRLTADASHelKTPLTILKNELESALQR 265
                  57889999887764455667778887775544 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.97
  HATPase_c_5   4 ldlcvilgnlLd.NAieacsk 23 
                  +dl+ il  +L+  Ai a+sk
   CCG92724.1 311 IDLSQILNEILEdTAILAASK 331
                  799999999996258888876 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 9.2e-07
  HATPase_c_5   6 lcvilgnlLdNAieacskieeekrfIrltvrekk.ksliisieNs....yeg.ek........kklesskskkeehGiGlksireivkkykgnlsiea 89 
                  + ++l n++dNAi+    i+    +I ++++ k  +  +++i+Ns      + e         +  + +++  + hG+Gl+  reiv  +kg++++ +
   CCG92724.1 352 IRRLLWNIFDNAIQYN--IS--GGYIGVSLQLKGtDRCLLQISNSgpvvP-EeERkkiferfyRGKNATEHGISGHGLGLNLCREIVLAHKGEITYLI 444
                  346899*******964..55..579******888355999*****66642.232223453232222255666789*******************9877 PP

  HATPase_c_5  90 edg 92 
                  +++
   CCG92724.1 445 DEK 447
                  665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3621.23
//
Query:       CCG92725.1  [L=249]
Description: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-37  129.4   0.0    1.7e-29  102.9   0.0    2.0  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
       0.11   12.8   0.0       0.22   11.9   0.0    1.5  1  TAF6_C      TAF6 C-terminal HEAT repeat domain


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   1.9e-33   1.7e-29       1     114 [.       4     122 ..       4     128 .. 0.97
   2 !   24.9   0.0   1.6e-09   1.4e-05      97     190 ..     131     225 ..     123     228 .. 0.81

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 1.9e-33
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EE..EE-SSHHHHHHHHHHHHCTT...--EEE-GGGS----GGGTT-B.HHHH CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidai..ysSplkRarqTaeliaealg...lpveldegLrEidfGdweglttaeia 94 
                 ++++RHGe+ wn+e+r+ g+td++L+++G+e+Ae +a+ l++e++ ++  y+S lkRa++T  +++++++   +pve+  +L+E+++G+++gl+++e+a
  CCG92725.1   4 VVFLRHGESLWNKENRFTGWTDIDLSAHGIEEAENAARLLKEENFVFDiaYTSLLKRAIRTLWIVLDKMDlmwIPVEKSWRLNERHYGALQGLNKSEMA 102
                 589***************************************99988888************************************************* PP

                 HH..HSHHHHHHHHH-GGG- CS
  His_Phos_1  95 eeypeeleawlrdpadvrpp 114
                 ++y ee    +r+++d rpp
  CCG92725.1 103 KKYGEEQVLLWRRSYDIRPP 122
                 ***************99987 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 1.6e-09
                 ..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHH..HHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS-EEEEE CS
  His_Phos_1  97 ypeeleawlrdpadvrppggEsledvaaRvaaale..elaarhegetvlvVsHggvirallarllglpleelrrleldnaslsvlefdeggwrlvr 190
                 +p++  ++++ p+ +++p  Esl+d  +R ++ +    l +  +g++vl+ +Hg  iral++++  ++ +e+  +++++    v e+de+g +l++
  CCG92725.1 131 HPKFDPRYKSLPP-ESIPSAESLKDTLERTVPYWTekILPEVLSGKRVLIAAHGNSIRALIKHIESISDKEIVGMNIPTGFPLVYELDEKGRKLTS 225
                 4555555555555.68889*************998533566778888***********************99999999988888888888877765 PP

>> TAF6_C  TAF6 C-terminal HEAT repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.5e-05      0.22      25      75 ..      38      98 ..      34     110 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.5e-05
      TAF6_C 25 fAAslLakilkkysssyktLkprvtrtllkvl.........ldpkkslgt.lyGallglaa 75
                 AA+lL++    +  +y++L +r +rtl  vl         ++++  l+  +yGal gl +
  CCG92725.1 38 NAARLLKEENFVFDIAYTSLLKRAIRTLWIVLdkmdlmwipVEKSWRLNErHYGALQGLNK 98
                699999999999********************9999999886766666545*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1933.89
//
Query:       CCG92726.1  [L=447]
Description: Heavy metal RND efflux outer membrane protein,CzcC family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-24   84.9   0.4    4.5e-14   52.7   0.1    2.2  2  OEP       Outer membrane efflux protein
  ------ inclusion threshold ------
       0.17   11.4   0.1        7.5    6.0   0.0    2.1  2  DUF4466   Domain of unknown function (DUF4466)


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   2.9e-11   2.6e-07       2     188 .]      41     225 ..      40     225 .. 0.95
   2 !   52.7   0.1     5e-18   4.5e-14       1     184 [.     247     435 ..     247     439 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.9e-11
         OEP   2 dellalalennpdlkaaeaeieaa.eanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaql 99 
                   l+++al  +p +     eieaa  ++++a+ +  +P++    +  +++++++ +  + + g      +l qpl   gk ++  ++a ++ e+ae+ +
  CCG92726.1  41 KKLVDQALTVDPTVHYFYMEIEAAkGQQIQARLFP-FPQFIGYIGPWNSSGSINAPSAFIPYGY--QLYQLYQPLPFPGKLKSHKEIAHLDREIAELIF 136
                 6799*******************************.***9888888888888888888888774..777889999999********************* PP

         OEP 100 eqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                  + ++ l+++v ++ +++ l++e+l++ ee ++++  +++   +r k G   l+++   q  l + +++++ ++q+l   ++qL++ll+
  CCG92726.1 137 LRYKLFLAFKVYSLVYSIGLTNENLRVTEEIIERFSALIAFLSQRPKIGIQGLIELRILQGGLISFLQSQRDQQQNLTTLKSQLNALLN 225
                 ***************************************************************************************97 PP

  == domain 2  score: 52.7 bits;  conditional E-value: 5e-18
         OEP   1 ldellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdg..........gkrrarvkaak 89 
                 l+ l +lal +np +++ ++ i  ae +l +ak + +P+++++  + y+ + +++ g +       +++t+ +p+  +           +++ ++ +a+
  CCG92726.1 247 LESLRRLALTHNPTILINDLLIHRAEKELYLAKLNAYPDFTAGPFWEYNKGINTDQGGG-------ITFTVGIPFSGSnvpgqagfawTTNKGNIISAQ 338
                 67899********************88888888888*******9999988888877754.......6666666654447777777888*********** PP

         OEP  90 aqleaaeaqleqarqqlrlevaqaylqlllakeqlela..eealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLe 184
                 a++ +a   +++++q + + + + ++ +++a+eql  +  e+ l+ +++a+ +ae++y++G i++   l +q ++l + +++++ e +l  + ++Le
  CCG92726.1 339 AKVSQAHSIYNATVQMINSLLGSRFAVYEKAREQLLSLpsEKILEKLKQAASIAERQYRVGSIDINRFLAVQKQYLAVSLSIRSTEIDLLSTFYELE 435
                 ***********************************77644999**********************66*********999999999988877666555 PP

>> DUF4466  Domain of unknown function (DUF4466)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0   0.00084       7.5      99     121 ..      49      71 ..      33      76 .. 0.83
   2 ?    3.2   0.0    0.0058        52      82     162 ..     337     417 ..     315     427 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00084
     DUF4466  99 tvaatlRYyYvipeearGkevsf 121
                 tv  t+ Y+Y+  e+a+G++++ 
  CCG92726.1  49 TVDPTVHYFYMEIEAAKGQQIQA 71 
                 6678****************985 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0058
     DUF4466  82 sdsstngavtkvtltvDtvaatlRYyYvipeearGkevsftfsakssn.GekvsyklgpYkiskmdmkknlelkneekayls 162
                 ++++ ++a +  + tv  + + l   + + e+ar + +s       ++  +++s++  +Y++ ++d+ + l ++++ +  +s
  CCG92726.1 337 AQAKVSQAHSIYNATVQMINSLLGSRFAVYEKAREQLLSLPSEKILEKlKQAASIAERQYRVGSIDINRFLAVQKQ-YLAVS 417
                 4555555556666666667777777777777777777777665554441577899******************988.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3410.07
//
Query:       CCG92727.1  [L=437]
Description: Heavy metal RND efflux outer membrane protein,CzcC family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-23   81.8   7.8    1.5e-11   44.5   1.2    2.1  2  OEP       Outer membrane efflux protein
  ------ inclusion threshold ------
       0.18   12.0   0.5       0.54   10.5   0.5    1.8  1  SRP54_N   SRP54-type protein, helical bundle domain


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.8   1.4e-14   1.2e-10       2     188 .]      46     230 ..      45     230 .. 0.89
   2 !   44.5   1.2   1.6e-15   1.5e-11       2     188 .]     254     432 ..     253     432 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1.4e-14
         OEP   2 dellalalennpdlkaaeaeieaa.eanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaql 99 
                 ++l++ a+ +np+++ +ea ieaa  + ++a+    +P++   g  g   ++++ g+ +gg +  +   ++ qp+f  gk     +++  + e a++ l
  CCG92727.1  46 QNLIEEAYRRNPEILYYEAGIEAAkGQSIQAKILP-YPEI--VGYAGPWFSSPSQGEKSGGATGFYQEYEIVQPFFFPGKMDILKAISDKDGELARLWL 141
                 789*********************99999999966.6666..444444444444444444444448999****************************** PP

         OEP 100 eqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                 +q +++lr++va++ +ql  a  + ++ +e +++++++++   +r k G   lld+  +q +l + ++ ++e+eq  +   aqL+++lg
  CCG92727.1 142 NQFKLSLRAQVASLAYQLAVADVNAKATQEIVNQSKELIDFLAKRPKIGIQGLLDLRIIQGSLVDFQRMYREQEQLKKTVFAQLNAILG 230
                 **************************************************************************999999999988877 PP

  == domain 2  score: 44.5 bits;  conditional E-value: 1.6e-15
         OEP   2 dellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqle 100
                   ll+la ++n  +k+   eie a   ++ ak   +P+++l+  + +e +++++ g++       v +t  +pl+  +++r ++  ++a++e+a   l+
  CCG92727.1 254 KKLLDLASKQNNFIKMRVVEIERAGKVIDSAKLMNMPDFGLGPYFIQEKGTNNNIGPG-------VIFTSGVPLW--NQNRGNILTSEARKEQAVSMLA 343
                 6799********************88888888888*****************999986.......999999**99..9********************* PP

         OEP 101 qarqqlrlevaqaylqlllakeql.elaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                  + + +++++++ +  +++a  +l ++   +l+++++a++lae++y++G+  +   l++q+++  + ++l++a+ + ++a + L+ l+g
  CCG92727.1 344 STWRMVQSAINSRLEVYRQATSLLaKQPLSLLDELRSAVNLAERQYRVGALPVQTFLEIQRQYIFSALTLRTAQIDAAVAFYDLQTLTG 432
                 ************************99***************************55*************************999999987 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   6.1e-05      0.54      30      57 ..     155     181 ..     149     225 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.1e-05
                 HHHHHHHTT--HHHHHHHHHHHHHHHHC CS
     SRP54_N  30 leeaLleaDVgvkvvkklienvkkkavg 57 
                 l  +L  aDV+ k++++++++ k+  + 
  CCG92727.1 155 LAYQLAVADVNAKATQEIVNQSKE-LID 181
                 5668999*************9988.654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3327.62
//
Query:       CCG92728.1  [L=288]
Description: Membrane-fusion protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00027   21.6   0.1    0.00082   20.1   0.0    1.8  2  HlyD_3    HlyD family secretion protein


Domain annotation for each model (and alignments):
>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.6e-08   0.00082      41     105 ..     134     195 ..     129     199 .. 0.89
   2 ?   -3.2   0.0      0.78   1.4e+04      21      31 ..     258     268 ..     247     281 .. 0.56

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.6e-08
      HlyD_3  41 kvpaadlgsikkkgqkvtlkld.qgsdytlkgkierisptvdaktgaykvevslenpekksiplkp 105
                 +++a+d+ ++ ++gq+v +k    gs++t++gki  i+ +  +  g++++ +++ +p   +++l++
  CCG92728.1 134 FIDAKDSEKL-NVGQRVLVKSKqEGSEATYEGKIFFIDKELIPVIGKAELILQITDP---KQRLQA 195
                 899*******.6**********88***************999999999999999999...566655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.78
      HlyD_3  21 vqagdelleii 31 
                 +++g+e+++  
  CCG92728.1 258 IEKGQEVVTHG 268
                 44445544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2255.44
//
Query:       CCG92729.1  [L=1059]
Description: putative silver-cobalt-zinc-cadmium efflux pump [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.5e-258  858.2   7.7   8.5e-258  858.0   7.7    1.0  1  ACR_tran       AcrB/AcrD/AcrF family


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  858.0   7.7  4.7e-262  8.5e-258       3    1020 ..       7    1037 ..       5    1038 .. 0.97

  Alignments for each domain:
  == domain 1  score: 858.0 bits;  conditional E-value: 4.7e-262
                  HHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS-H CS
    ACR_tran    3 kffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtdi 99  
                   ++i+++ ++l la+++ ++G  s+++lP+da+P++++++vq++t +p  +pe+ve+ +t p+E ++ g++gl++++S S+ gls++tl F dgtd+
  CCG92729.1    7 FLSIEKKEIVLGLAIVLFIVGLWSFFHLPIDAVPDLSNVQVQINTYVPAFAPEEVEKLITFPIEIEMGGIPGLETIRSLSKFGLSQVTLIFRDGTDV 103 
                  58999******************************************************************************************** PP

                  HHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEES.......SSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE- CS
    ACR_tran  100 diArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtsk.......dgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwld 189 
                  +  rq v +rl  a +k+P ++ +p++++i t+++ei+ + +  k       ++ l+  elr l+e +i+++L+rv GV+dv+++Gg++k + + +d
  CCG92729.1  104 YRSRQLVGERLLVASSKIPPNI-TPTMAPIATGLGEIFNYIIRYKegadkpsSELLQLIELRLLQEYTIRPMLRRVAGVADVNTSGGYQKLILVEPD 199 
                  **********************.********************9988888877778899************************************** PP

                  HHHHHCTT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEEETTS.CEEEHHHCEEEEEEESSSSSEEEETTEEEEEEEEE CS
    ACR_tran  190 pqklaklgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivknqdg.skvrlrDvAkVelgaeeerlaatfngkpavllevk 285 
                  p +l ++glt+ +  + + ++ + +++G +++ +e+l++r  g++++ ++i  i +k++ g ++v++rDvAkVe g + + +aat+ng +avl++v 
  CCG92729.1  200 PSRLTNVGLTIGEFGHIVGQNTEIAGGGVIDKAGEQLTVRSLGRVNTLDEIAIIPIKYAGGsQPVLVRDVAKVEVGGNIRVGAATYNGAEAVLGTVM 296 
                  *************98877766666677788***************************7776268********************************* PP

                  EETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT-- CS
    ACR_tran  286 klpganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfs 382 
                  +l+ +n+++v+++v ++le +++ +P++ eiv+vy+r+e+v+a+i++V ++L e+++Lv  ++f+ L+n+r++l +a ++P+s l++++++ +lg+s
  CCG92729.1  297 MLIKENSRAVSERVSKQLELIQQRIPSSFEIVPVYNRAEVVNATIRTVTHNLTEGALLVTAIIFVLLGNWRSSLLIASVIPMSFLFAITLMCWLGLS 393 
                  ************************************************************************************************* PP

                  BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HTS-H.........HHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHH CS
    ACR_tran  383 lNlltLfgLvlAiGlvvDdAiVvvEnierklee.egekp.........leaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivl 469 
                   Nl++L+++++  Gl+vD+A+Vv En+ r+l+  e++           +++++ ++ ++ g++ ++ l++++v+lPil+l+G+eGk fr++a+t+++
  CCG92729.1  394 GNLMSLGAIDF--GLIVDGAVVVTENVLRRLSVkEAL-LarpispeekRKEIFDATLQVIGSVFFGILIITVVYLPILTLSGIEGKTFRPMAITVIF 487 
                  ***********..*******************94333.2589999999************************************************* PP

                  HHHHHHHHHHCCHHHHHHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH.HHCS-BESS----TSEEEEEE CS
    ACR_tran  470 aillsvlvaltltPalcallLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsvll.fvripkeflPeedegvlvtsv 565 
                   +  s+l++lt +P ++ l Lk++ke k+       +++++ l++aY  +l++ l++ ++++l a++ll++s+++ f+r+++ef+P++deg++++++
  CCG92729.1  488 ILSGSLLLSLTYVPTVAVLGLKAQKEMKD-------TFVVSVLKKAYLLVLHWTLASGKWIVLPAALLLIASAFIaFSRLGTEFIPRLDEGSIAAMI 577 
                  **************************999.......89******************99999998888888866652789****************** PP

                  E-STTB-HHHHHHHHHHHHHHHH.TTTTEEEEEEEECECS.SE..ECCCEEEEEEEES-GCGS-SGGG...SHHHHHHHHHHHCT.TSTSSEEEEEE CS
    ACR_tran  566 qlppgvsleqtqkvlkqvekilk.ekpevesvfavtGfae.sgdtagpnsakvfisLkpekerkeeek...svealierlrkelk.kipganvella 656 
                   +  ++ l  + ++ k+ ek+l  ++pe++ +f+++G++e ++d ++pn+ +++ +Lkp++ +++++    s+++lie ++ke++  +pg +v +++
  CCG92729.1  578 YRAWSSDLPSSVAMEKKTEKMLLeKFPEIKCIFSRVGTSEiATDPMPPNENDIYLMLKPKDMWRKKNGkpiSKAELIELINKEISyRVPGQKVLFSQ 674 
                  ********************6666*************************************998777656799**********9857********** PP

                  TTSSCCCSSSSCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEE CS
    ACR_tran  657 piqlreletlsgvrselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfie 753 
                  pi+ r++e+l+gvr++l  k fg+d++ L+++a+q  a +k +p+  + + +++ d p l+  +dr+ +a++ +++s++n+++ +a+ g+ v+ +i+
  CCG92729.1  675 PIETRFNEMLEGVRTDLSIKWFGEDYDILTNLAKQTEAIVKSIPGTLETQIQAEGDAPSLEFIPDRQLMAKYNIEASEMNSAIYSAMAGNPVGLMID 771 
                  ************************************************************************************************* PP

                  TTEEEEEEEEE-GGGSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEE CS
    ACR_tran  754 egrrvkvvvrleedlrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiew 850 
                  +++r+ + +rl+e++r++pe++ +l++++ +g ++pls++ + +  k p si reng+r  ++  +  ++d+ + +ee+ +k++k+++ p+g+++e+
  CCG92729.1  772 GEKRYPITIRLPEHFRENPEEVLNLPIKSVTGGVMPLSSICHYQIYKRPRSIFRENGVRYRAVMVTFTKKDIEGYVEEIRKKVEKQIHPPKGYYVEY 868 
                  ************************************************************************************************* PP

                  EHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ACR_tran  851 tgqaeqeqeasnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelreke 947 
                  +gq ++  +a ++l ++v+ +lll+f++  +  +++++ ll++++vP+a +G++l+l++ ++++s+ a++G+i+l G++v+  ++lv+f+++lr+ e
  CCG92729.1  869 AGQYQNLIKARQRLFVIVPSCLLLIFFLSYIALKNFKQSLLVISSVPFAATGGILSLFFLHIPFSISAAIGMIALSGISVLASLILVTFINQLRQ-E 964 
                  ***********************************************************************************************.* PP

                  TTCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  948 gksleeaileaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlv 1020
                  g++l+eai + +  R+rPiL Ta +a+lG++P+als+gaG+e+q+pl+ivv+gG+ +st+LtLll+P+lY  +
  CCG92729.1  965 GYELKEAIERSCDLRFRPILTTAAVASLGFIPMALSKGAGAEVQKPLAIVVIGGIGSSTFLTLLLLPLLYFYL 1037
                  **********************************************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1059 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.50
# Mc/sec: 6355.74
//
Query:       CCG92730.1  [L=183]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-19   69.1   0.0    7.7e-19   68.6   0.0    1.2  1  YkuD      L,D-transpeptidase catalytic domain
  ------ inclusion threshold ------
      0.097   13.0   0.4       0.39   11.0   0.4    2.0  1  DUF2778   Protein of unknown function (DUF2778)
       0.14   12.2   0.0       0.44   10.6   0.0    1.7  2  SCAB-Ig   Ig domain of plant-specific actin-binding protein


Domain annotation for each model (and alignments):
>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   1.3e-22   7.7e-19       4     146 .]      48     181 ..      46     181 .. 0.84

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 1.3e-22
                 EEEETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTT.......CECCCCEEE- CS
        YkuD   4 ivvdlaeqrllvlyengklvlsfpvsvGgkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskv.......algkvkfvfp 95 
                 i+v+l+eq+++ + +ngklv    +s+G   ++++ TP G ++i +k++ +++n+++ i  + + + lr   ++++     +            +f   
  CCG92730.1  48 IIVSLSEQKIYAYGTNGKLVGASIISSG---KENFSTPAGEYQIIEKEKIHYSNLYGYIVDR-YGNILRPGSSKER-----IskkwhfrGAPMPYFLRL 137
                 9*********9999**************...77*************************8444.4444442222221.....13456789999******* PP

                 STTS-EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEEEE CS
        YkuD  96 ngsgiyiHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpvvi 146
                 ++sgi++Hg ++ +       ++ ShGCirl+ + a +l+ + +  t+v +
  CCG92730.1 138 TNSGIGFHGGPTTG-------RPISHGCIRLPMDFAAKLFTNTPIHTRVLV 181
                 ********777774.......489******************999998876 PP

>> DUF2778  Protein of unknown function (DUF2778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   6.6e-05      0.39      15      96 ..      69     162 ..      55     180 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.6e-05
     DUF2778  15 dpestavknkGpiPpgtYeiveresgglngkvkek..................rseWFalvradrkiddeteiegvkRggfrlHpl.lgpsgeSeGCit 94 
                     ++ k++ ++P+g+Y+i e+e+ ++ + ++                     ++W+++  + +      +   +  +g+ +H++  + + +S+GCi 
  CCG92730.1  69 ASIISSGKENFSTPAGEYQIIEKEKIHYSN-LYGYivdrygnilrpgsskeriSKKWHFRGAPMP-----YFL-RLTNSGIGFHGGpTTGRPISHGCIR 160
                 5555666777789*******9999995544.5544588899999999999998888944444433.....333.35568999***988999*******8 PP

     DUF2778  95 lk 96 
                 l 
  CCG92730.1 161 LP 162
                 75 PP

>> SCAB-Ig  Ig domain of plant-specific actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.4e-05      0.44      28      81 ..      32      84 ..      21      96 .. 0.84
   2 ?   -1.5   0.0      0.44   2.6e+03      39      58 ..     114     133 ..     106     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.4e-05
     SCAB-Ig 28 csiqWyrvssegskkelisG.atksvyaPePfdvGrilqadivlngekvivttag 81
                 ++qW r ++e    e+i+  +++++ya      G+++ a i+++g++ + t ag
  CCG92730.1 32 KNFQWLRNQTEVQISEIIVSlSEQKIYAYGT--NGKLVGASIISSGKENFSTPAG 84
                579*************986527899***865..699999***9999988776665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.44
     SCAB-Ig  39 gskkelisGatksvyaPePf 58 
                 gs ke is   ++  aP P+
  CCG92730.1 114 GSSKERISKKWHFRGAPMPY 133
                 78899999999888899887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1373.78
//
Query:       CCG92731.1  [L=521]
Description: N-methylhydantoinase B/acetone carboxylase, alpha subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     2e-206  686.4   0.0   2.3e-206  686.2   0.0    1.0  1  Hydantoinase_B  Hydantoinase B/oxoprolinase


Domain annotation for each model (and alignments):
>> Hydantoinase_B  Hydantoinase B/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  686.2   0.0  1.3e-210  2.3e-206       1     514 [.       2     518 ..       2     520 .. 0.99

  Alignments for each domain:
  == domain 1  score: 686.2 bits;  conditional E-value: 1.3e-210
  Hydantoinase_B   1 DpitlevfrnrlmsiaeemgrtlqrtaiSpnikerlDfscalfdadgelvaqaphipvhlgsmseavkavlekfegelkpGDvlltNdPyaggtH 95 
                     Dpi+le+f++ +  +aeemg tl+rta+Spniker+D+sca+++++g lvaq+ h+pvhlgsm+ av++v++ +  ++k+GDv+++NdP++ggtH
      CCG92731.1   2 DPIELEIFKSLFIYVAEEMGVTLRRTAFSPNIKERRDYSCAIYNKEGLLVAQGDHMPVHLGSMPMAVRRVVRSI--SMKKGDVVILNDPFEGGTH 94 
                     9**********************************************************************888..8****************** PP

  Hydantoinase_B  96 lpDitvitPvfhege...lvffvasraHhaDiGGitpGsmppdateifeEGlrippvklveegeleedvlelllanvRtpednlgDlkAqiaanq 187
                     lpDit+it vf ++    ++f+vasraHh+DiGGi+pGsm+   +ei++EGlrip vklveeg+ +e +l+l+l+nvRtp++++gDl Aq++an+
      CCG92731.1  95 LPDITMITAVFIDNAdgtPFFYVASRAHHSDIGGIAPGSMAL-TREIYQEGLRIPAVKLVEEGKWNEPLLNLILSNVRTPSEREGDLTAQLSANR 188
                     ***********9887889***********************8.9*************************************************** PP

  Hydantoinase_B 188 vgerrlkelieeyGldtveaamdeildnaeravraalaelpdgtyeaedyldd.g.....ipikvtvtidgdeatvDftgtspqvkgniNaplav 276
                     vge+rl e++++yG++++ +am++++d++  +v+++l+++pdgty+a d+ldd g     ipi+v+++ +g+++ +Df+g+s qv+gn+Na++++
      CCG92731.1 189 VGEKRLLEMVRKYGKEKIAEAMSALIDYTASMVQKRLEQIPDGTYKALDFLDDdGispepIPIQVAIQKKGKSVLIDFNGSSHQVEGNLNAVFSI 283
                     ***************************************************9977888888******999************************* PP

  Hydantoinase_B 277 tlsaviyvlrclvdediplNeGclrpievklpegsllnpsepaavvggnvetsqrvvdvvlkalaqalpervaAasqgtmnnltfggvderggef 371
                     t+sav yvlr+l+ e++p N+G+l+ +++++p g+++n+ +pa+v+ggnvetsqrvvdv+l+al+qa+pe ++Aas+gtmnnl fgg + +++e+
      CCG92731.1 284 THSAVAYVLRALLPEEVPANAGILSSVQLIAPSGTVVNAIYPASVAGGNVETSQRVVDVLLRALHQAIPELIPAASSGTMNNLSFGGLHYESAEP 378
                     *****************************************************************************************99999* PP

  Hydantoinase_B 372 fgyyetiagGaGArpgkdGasavhvhmtntrntdvEilErryPvlverfelrpdsgGaGkyrGGdGvvreieflepevtvsilserrvfapwGla 466
                     f+yyeti+gG+G++p +dG sav++hmtn+ nt++E++E + P++v+r+++r++sgG+G+ +GGdG++reiefl+p +tvsils+rr+fap+Gl 
      CCG92731.1 379 FTYYETIGGGMGGGPLGDGDSAVQTHMTNSLNTPIETMEYNLPIRVKRYAIREGSGGKGEKKGGDGIIREIEFLQP-MTVSILSDRRKFAPYGLL 472
                     ***************************************************************************9.****************** PP

  Hydantoinase_B 467 GGepGargrvvlnllvr.geeenlggkatvelkagdvlvietpGGGGyG 514
                     GGe+G++g+   n+l+r g+e++l++k+ +++++gd+l+ietpGGGG+G
      CCG92731.1 473 GGEDGKPGE---NILIRqGQEIRLPSKKVFSVQKGDLLRIETPGGGGWG 518
                     *********...9999989****************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3657.20
//
Query:       CCG92732.1  [L=691]
Description: N-methylhydantoinase A/acetone carboxylase, beta subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-87  293.0   0.5    7.9e-85  284.6   0.1    2.3  2  Hydantoinase_A  Hydantoinase/oxoprolinase
    2.2e-49  167.5   0.3    2.6e-47  160.8   0.0    2.3  2  Hydant_A_N      Hydantoinase/oxoprolinase N-terminal region
     0.0063   16.9   1.9        0.7   10.3   0.1    2.5  2  FtsA            Cell division protein FtsA
  ------ inclusion threshold ------
      0.056   12.9   0.0        0.1   12.1   0.0    1.4  1  ROK             ROK family
      0.087   11.4   0.2        1.1    7.8   0.1    2.1  2  MutL            MutL protein
       0.14   11.6   1.2        0.2   11.1   0.2    1.6  2  Ppx-GppA        Ppx/GppA phosphatase family


Domain annotation for each model (and alignments):
>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0015       4.4      82     103 ..       5      26 ..       3      64 .. 0.87
   2 !  284.6   0.1   2.6e-88   7.9e-85       1     290 [.     197     506 ..     197     507 .. 0.96

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0015
  Hydantoinase_A  82 ItfDmGGTstDvslikdgevev 103
                     I++D+GGT tD  +++ g++++
      CCG92732.1   5 IGVDIGGTFTDFVVYDGGTIQR 26 
                     99**************888865 PP

  == domain 2  score: 284.6 bits;  conditional E-value: 2.6e-88
  Hydantoinase_A   1 rtetavvnAylspilreylesvekslekrgak.............arlmvmqsdGglvsadearkkpvetilSGPaaGvvgaaatsklagekkvI 82 
                     rt+t+v+nA++ p++++yle+  +sl +  a+             + + +mqs+Gg++s+d +rkkp+ tilSGPa+Gv +aaa+++  g ++v+
      CCG92732.1 197 RTSTTVLNAMIGPVISRYLEGALNSLYEWIASrfgrqllsrcrrkSFFRIMQSNGGILSVDGIRKKPLLTILSGPAGGVCAAAAVARSCGLERVV 291
                     89**************************87779**********998999********************************************** PP

  Hydantoinase_A  83 tfDmGGTstDvslikdgevevsleteiagvkvrlpaldirtvgagGgsilvvdeggklrvgpesagadpgpacyrkGgteltvTDanlvLGrlqp 177
                     t+DmGGTstDvs++   e+ +++e ei+g+   +  l+i++v+agGgsi++vd gg+lrvgp+s+g+dpgp+cy+kG   ltvTDa+++LGrl  
      CCG92732.1 292 TLDMGGTSTDVSFFVGEEMDRTTEGEIGGYAFGSSILSIKSVAAGGGSIVRVDAGGALRVGPQSVGSDPGPICYGKGE-CLTVTDAHVILGRLLD 385
                     ***************9**************************************************************.**************** PP

  Hydantoinase_A 178 edflsgpdgdqkldvelarrafee.lakelnlk..........veevAegilsvavenmanavrklsvergldpkeltlvvfGGaGaqhaaalae 261
                       fl   +g+ +ld++ + + fe+ +++++ +           v  +A+gil++a+ +ma+a++ ++v++gldp+++ l+v+GGaG++h + lae
      CCG92732.1 386 TVFL---GGQLRLDRQRTWQLFEQfCQQKMAEYiekeggiekaVIGLAQGILDIANLQMAKAIELMTVSKGLDPRDFSLMVYGGAGGLHGCDLAE 477
                     ****...***************651555555559999********************************************************** PP

  Hydantoinase_A 262 elgvkkvivppyagvlsalGmalAdvree 290
                     +lg++ v+vp+ +g+++ lG++l+dv ++
      CCG92732.1 478 ALGIPLVVVPRDPGLFCSLGVLLSDVVKD 506
                     *************************9875 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   0.0   8.6e-51   2.6e-47       1     176 [.       4     177 ..       4     179 .. 0.94
   2 !    4.4   0.3    0.0088        26       2      19 ..     291     308 ..     290     328 .. 0.83

  Alignments for each domain:
  == domain 1  score: 160.8 bits;  conditional E-value: 8.6e-51
  Hydant_A_N   1 rigIDvGGTfTDavaldekeeevavlKllstpdavaegirealeevleesiprtskidvvrmGTTvatNallerkgervaLittkgfrdlleigrqnrp 99 
                 rig+D+GGTfTD+v++d+  ++++ lK  st+  ++eg++e ++e+l++   ++ +   +++GTTv tNa+le+kg+++aL+ttkgf+d+leigrqnr+
  CCG92732.1   4 RIGVDIGGTFTDFVVYDG--GTIQRLKRRSTSMRPEEGLIEGIKELLNS--FDRLNAFEIVHGTTVGTNAILEGKGAKTALFTTKGFEDVLEIGRQNRR 98 
                 79***************5..69************************987..4467777899************************************** PP

  Hydant_A_N 100 dlfelrik..kplvlyeevvevderveadgevlkpldeeevrealkalkaagvesiavvllhSylnpehElrvaeiare 176
                  l++l  +    l+++  ++ v erv+ +gevl+++d +++   + +lk+++ves+av++l+S++np hE++++  +r+
  CCG92732.1  99 SLYKLGPSkvPCLIPRHLRFGVPERVTKEGEVLESIDLSAIDTVVDKLKEEQVESVAVSFLFSFANPIHEKKIGLFLRQ 177
                 ****9999656799***********************************************************988776 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0088
  Hydant_A_N   2 igIDvGGTfTDavaldek 19 
                 +  D+GGT TD+ ++ ++
  CCG92732.1 291 VTLDMGGTSTDVSFFVGE 308
                 678********9888765 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00023       0.7       1      24 [.       5      28 ..       5      70 .. 0.80
   2 !    5.7   0.3    0.0068        20       2      30 ..     292     320 ..     291     351 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00023
                EEEEE-SSSEEEEEEETTEEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvhlr 24
                ++vDiG++ td++v+++g ++ l+
  CCG92732.1  5 IGVDIGGTFTDFVVYDGGTIQRLK 28
                58****************988744 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0068
                 EEEE-SSSEEEEEEETTEEEEEEEES--H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA   2 lvDiGagktdvavaedgalvhlrvigvgg 30 
                  +D+G+++tdv+ + ++++  ++   +gg
  CCG92732.1 292 TLDMGGTSTDVSFFVGEEMDRTTEGEIGG 320
                 69************999888765555554 PP

>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.4e-05       0.1       2      53 ..       5      54 ..       4      85 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.4e-05
                EEEEE-SSEEEEEEEETTS-EEEEEEEEEHCCHHCCHHHHHHHHHHCCCHCC CS
         ROK  2 igidiGgtkialalvdeegeilarekvetptetteetlvdaiaelvdeaerk 53
                ig+diGgt + + + d  g+i   ++   +   +ee+l++ i+el+++ +r 
  CCG92732.1  5 IGVDIGGTFTDFVVYD-GGTIQRLKRR-STSMRPEEGLIEGIKELLNSFDRL 54
                8*************99.4444444444.7999**************998763 PP

>> MutL  MutL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.037   1.1e+02       4      52 ..       7      52 ..       5      72 .. 0.68
   2 ?    7.8   0.1   0.00036       1.1     227     264 ..     270     305 ..     243     333 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.037
        MutL  4 iDiGSttTkvtlvdlekvderllgqaeapTtvee.edvleGleealeele 52
                +DiG t+T  ++ d  +    +    +  T++   e + eG++e l++  
  CCG92732.1  7 VDIGGTFTDFVVYDGGT----IQRLKRRSTSMRPeEGLIEGIKELLNSFD 52
                79999999999999943....33333444444434677777777766655 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00036
        MutL 227 TPaAvlkavellaeeeekglgdllvvDvGGaTTdvhsv 264
                  Pa  + a+ ++a+  + gl+ ++++D+GG++Tdv  +
  CCG92732.1 270 GPAGGVCAAAAVAR--SCGLERVVTLDMGGTSTDVSFF 305
                 55555566666666..45788**************766 PP

>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.2   3.6e+03     115     135 ..       5      25 ..       4      31 .. 0.80
   2 ?   11.1   0.2   6.7e-05       0.2      89     136 ..     266     312 ..     263     329 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.2
                 EEEEEETTEEEEEEEETTEEE CS
    Ppx-GppA 115 lviDiGGGStElvlgeekevs 135
                 + +DiGG  t+ v+ ++ +++
  CCG92732.1   5 IGVDIGGTFTDFVVYDGGTIQ 25 
                 569*******99998877665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.7e-05
                 EEE-HHHHHHHHHHHHHHHT---SSEEEEEEETTEEEEEEEETTEEEE CS
    Ppx-GppA  89 eiisgeeEarliylgvvssllekgrglviDiGGGStElvlgeekevsk 136
                  i+sg+  +  ++++v++s     r++++D+GG St++++  ++e+  
  CCG92732.1 266 TILSGPAGGVCAAAAVARSC-GLERVVTLDMGGTSTDVSFFVGEEMDR 312
                 58999999999999999999.88899*************998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5075.56
//
Query:       CCG92733.1  [L=541]
Description: Predicted APH family phosphotransferase fused to gluconate kinase family enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-15   56.4   0.0    5.8e-15   55.7   0.0    1.4  1  AAA_33      AAA domain
      2e-07   30.6   0.0    3.6e-07   29.7   0.0    1.4  1  6PF2K       6-phosphofructo-2-kinase
    5.4e-05   23.6   0.1    0.00011   22.7   0.1    1.5  1  AAA_17      AAA domain
    7.6e-05   23.3   0.1    0.00018   22.0   0.1    1.6  1  AAA_18      AAA domain
      0.001   18.4   0.1      0.003   16.9   0.0    1.8  2  Zeta_toxin  Zeta toxin
     0.0085   16.0   0.5      0.032   14.1   0.0    2.3  3  dNK         Deoxynucleoside kinase
  ------ inclusion threshold ------
       0.03   13.8   0.0      0.055   12.9   0.0    1.3  1  KTI12       Chromatin associated protein KTI12


Domain annotation for each model (and alignments):
>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   2.3e-18   5.8e-15       1     128 [.     353     487 ..     353     502 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 2.3e-18
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlfg.......tdqqskt.dytrvldrlyqilnelarkalsagrnvildatnlsrrerarflkl 91 
                 l+++ G  ++GKs+la++l+++l++ + ssd +r+ + g       ++  +++ ++ ++++++y++l       ls +++v+ldat+ ++++ra +l++
  CCG92733.1 353 LLVVMGKIATGKSYLAQSLAEELDWKVFSSDRIRKEMLGldiytrpEESIREKlYSEEITSKTYERLIHNGLTELSTNKGVVLDATFGRKEQRALLLEA 451
                 67899**********************************999865533333333777799999996655555579************************ PP

      AAA_33  92 arrlgvpvrivvvetdeetlkeRlakRaangddrsev 128
                 ++  g+ v+ + v++d  t k+Rl +R+   ++ s++
  CCG92733.1 452 VHSKGYSVLFIEVQADLPTRKKRLVERSVY-RSISDA 487
                 ***************************984.444444 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.4e-10   3.6e-07      11     134 ..     349     467 ..     341     485 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.4e-10
                 .S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS...---GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS--SEEEEES-- CS
       6PF2K  11 nsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyrreaska...lsdaeffrpdneealklreklalaalkdllaylneeegqvaifDAtN 106
                 ++++++v++G  a+gK+y+++ l   l w     kvF   ++r+e+      ++  e++r +   + ++ +k+  + +++ l++l+ ++g   + DAt 
  CCG92733.1 349 SKPILLVVMGKIATGKSYLAQSLAEELDW-----KVFSSDRIRKEMLGLdiyTRPEESIR-EKLYSEEITSKTYERLIHNGLTELSTNKGV--VLDATF 439
                 578999*******************9999.....99**********99855322223333.333455666666677777777888888875..69**** PP

                 -SHHHHHHHHHHHHHTT-EEEEEEEE-- CS
       6PF2K 107 ttrerRklilefveennlkvlflesics 134
                  ++e+R+l+le v+++++ vlf+e+ ++
  CCG92733.1 440 GRKEQRALLLEAVHSKGYSVLFIEVQAD 467
                 ************************9765 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   4.1e-08   0.00011       5     130 ..     361     487 ..     357     492 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.1e-08
                 TSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTS.HSSHHHHC.TS.HHHHHHH.HHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHHHHH CS
      AAA_17   5 GsGKgtqceklvekygfthlsaGdllreeakrggl.akardemr.kl.pleekke.lqkeaaekiaeeakkkgvlvdghprikeqagfldglpkevlee 99 
                   GK+ +++ l+e+++ +++s +d +r+e+       + ++ +r kl ++e++ + + +++ + + e + +kgv++d  +  keq+ +   l + v  +
  CCG92733.1 361 ATGKSYLAQSLAEELDWKVFS-SDRIRKEMLGLDIyTRPEESIReKLySEEITSKtYERLIHNGLTELSTNKGVVLDATFGRKEQRAL---LLEAVHSK 455
                 57*******************.*******99887655666667644434444444045555566677789**********98887776...45566667 PP

                 H..SEEEEEE--HHHHHHHHHHH.TTST-TS- CS
      AAA_17 100 lkpdaiilleadpeeilerrlkd.rtrgrddd 130
                     ++i ++ad  +  +r+ ++   r+ +d 
  CCG92733.1 456 GYSVLFIEVQADLPTRKKRLVERsVYRSISDA 487
                 75666777777777777777776223444544 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   7.1e-08   0.00018       2     114 ..     355     479 ..     354     491 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 7.1e-08
      AAA_18   2 lltGtpGvGKttlakeLskrlgf....gvnlrdvakenglllevdpe...aldeskrldedkldklldaleenss..........aleegknlvidghl 83 
                 +++G++++GK+ la+ L+++l      ++++r+     ++++  ++    +l ++++  + +   ++++l e s            + e+  l+++ ++
  CCG92733.1 355 VVMGKIATGKSYLAQSLAEELDWkvfsSDRIRKEMLGLDIYTRPEESireKLYSEEITSKTYERLIHNGLTELSTnkgvvldatfGRKEQRALLLEAVH 453
                 689*****************9777788888888888888888888888888888888888888888888888776555555555545555555555555 PP

      AAA_18  84 aeleseaakdikkvvLtaspeelleRlekRg 114
                 ++ +s  +     + ++a+  ++++Rl +R+
  CCG92733.1 454 SKGYSVLF-----IEVQADLPTRKKRLVERS 479
                 55555544.....89************9997 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.2     3e+03     157     187 ..     173     203 ..     171     209 .. 0.81
   2 !   16.9   0.0   1.2e-06     0.003      14     130 ..     349     465 ..     336     501 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.2
  Zeta_toxin 157 eehdeafeglresvealeeekqldrvkikdr 187
                 ++ de fe+ ++ +++  +++++++++++++
  CCG92733.1 173 KNTDENFEQTQSVINITVSQTAFESIRYFTN 203
                 6788999999999999999999999998765 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.2e-06
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPeyeeilk...a.dpkkas.eltqkdaselvekllqeaiengyniivegtlrsp 107
                 ++P+l+++ G  + GKs+la+ l++el    +  +++ D++R+     +   +     ++k +s e t+k   +l  + l+e+  n+  ++++ t+   
  CCG92733.1 349 SKPILLVVMGKIATGKSYLAQSLAEEL----DWKVFSSDRIRKEMLGLDIYTRpeeSiREKLYSeEITSKTYERLIHNGLTELSTNK-GVVLDATFGRK 442
                 79************************9....677899*****998775554444432344444415677788888888888888776.79********* PP

  Zeta_toxin 108 dvvkklaealkkaGYevevvvva 130
                 ++ + l ea++++GY+v  + v 
  CCG92733.1 443 EQRALLLEAVHSKGYSVLFIEVQ 465
                 ***************99766655 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.9   4.8e+03      76     132 ..     138     191 ..     114     200 .. 0.57
   2 !   14.1   0.0   1.2e-05     0.032       1      28 [.     354     381 ..     354     438 .. 0.90
   3 ?   -2.3   0.0       1.3   3.4e+03      73      87 ..     469     483 ..     448     485 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.9
                 -EEEEES-HHHHHHTHHHHHHHTTSS-HHHHHHHHHHHHHHHHHCCH-SEEEEEE-- CS
         dNK  76 qvvvleRsiysdryiFakalaekgtlseeelkiykelldnlleelakpdlliYLkas 132
                 q   +eR + + +  F k    +g ++   + + +++ +n  e++++ + +i + +s
  CCG92733.1 138 QLADMERIVSKLC-QFYK--ETEGGADIASWGTIEKIKKNTDENFEQTQSVINITVS 191
                 4444555555544.3444..4556666667777777777777777777777766665 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.2e-05
                 EEEEESTTSSHHHHHHHHHCCSTCEEEE CS
         dNK   1 ivveGnIgaGKstlvklLskklgvkvfe 28 
                 +vv G+I+ GKs l++ L+++l++kvf+
  CCG92733.1 354 LVVMGKIATGKSYLAQSLAEELDWKVFS 381
                 6899**********************97 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.3
                 SSS-EEEEES-HHHH CS
         dNK  73 atkqvvvleRsiysd 87 
                  t + +++eRs+y +
  CCG92733.1 469 PTRKKRLVERSVYRS 483
                 567788999999975 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.1e-05     0.055       3     134 ..     353     493 ..     352     506 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.1e-05
                 EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH...........TTSSS--GGGHHHHHHHHHHHHHHHHTT.SEEEE-S---SHHHHHHHHH CS
       KTI12   3 LvvltGlPssGKstrakeLakaleeekrsvvviddeslg..........iekdsykdsakekalRsslrsavkrdLskekvVIvDslnyikgfRYeLyc 91 
                 L+v++G  ++GKs +a+ La++l  +  s   i++e lg          i+++ y ++ + k+  ++l+ +   +Ls++k V++D++   k  R  L  
  CCG92733.1 353 LLVVMGKIATGKSYLAQSLAEELDWKVFSSDRIRKEMLGldiytrpeesIREKLYSEEITSKTY-ERLIHNGLTELSTNKGVVLDATFGRKEQRALLLE 450
                 8999*********************888887788777776655544443445555555555544.344445556899**********999999999999 PP

                 HHHHTT-EEEEEEEE--HHHHHHHHHHTT-S..S-HHHHHHHH CS
       KTI12  92 iakaakttlcvvyvvapldvlvkwneereekeeyekelldaLi 134
                 ++ +    +  + v a+l +  k+  er+  ++++++ l++L 
  CCG92733.1 451 AVHSKGYSVLFIEVQADLPTRKKRLVERSVYRSISDARLEDLP 493
                 9999999999999999999999988888888888888888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3891.37
//
Query:       CCG92734.1  [L=302]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.044   14.6   0.2      0.044   14.6   0.2    2.4  3  SGP       Sulphur globule protein


Domain annotation for each model (and alignments):
>> SGP  Sulphur globule protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.27   4.8e+03       7      26 ..      94     112 ..      87     140 .. 0.65
   2 ?   14.6   0.2   2.5e-06     0.044      14      68 ..     177     231 ..     166     250 .. 0.72
   3 ?   -1.5   0.1      0.26   4.7e+03      53      69 ..     269     285 ..     261     294 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.27
         SGP   7 gegkgygngagdglgdlfGd 26 
                 g +kg++ g g+g++ ++G 
  CCG92734.1  94 G-NKGWDFGSGKGVSLIVGP 112
                 4.777877777777776665 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.5e-06
         SGP  14 ngagdglgdlfGdgsgdfnmnmsgrgr.grgygrGygr..ygygapygYgypygygaP 68 
                 n +++    lfG+g+g+f+m+++ ++r + g++  +    y y+    Y    gy +P
  CCG92734.1 177 NHWTWAPALLFGKGWGNFSMQLNFGTRwTDGNNT-NSAlpYFYNVAFQY--RIGYVTP 231
                 44445556689***********999986444443.23235788776666..6788777 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.26
         SGP  53 ygapygYgypygygaPy 69 
                 ++ + g+gy+ g + P 
  CCG92734.1 269 WKVYFGFGYQIGLNSPT 285
                 56667888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2212.92
//
Query:       CCG92735.1  [L=169]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   12.0   0.0       0.24   11.5   0.0    1.2  1  DUF1694   Protein of unknown function (DUF1694)


Domain annotation for each model (and alignments):
>> DUF1694  Protein of unknown function (DUF1694)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.3e-05      0.24      42     108 ..      27      93 ..      20      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.3e-05
                 HHTSSS--HHHHHHHHC-SS.EEEEEETTS-HHHHHHHHHHHHHTT--EEEE---SS--SEEEEEEES CS
     DUF1694  42 qveekkvykeleealkkkka.lkllingkldedilskyiklakkenikftivndeeaesdiglvvasd 108
                  ++++ ++++l + l + ++  +++i++ l+ d +++yi + +  + +f  +++ + ++  g+++ s+
  CCG92735.1  27 AAKTPLATPRLLRFLDQFPEgEQMFIRSYLAFDCTHDYIGTTSADGEEFYFISE-DGNERKGVLLFSN 93 
                 5677778899999999955549*******************************9.6777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1259.36
//
Query:       CCG92736.1  [L=398]
Description: Malate/quinone oxidoreductase or related dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-60  206.0   0.0    1.4e-60  205.7   0.0    1.1  1  DAO            FAD dependent oxidoreductase
    0.00024   20.5   0.5     0.0076   15.5   0.4    2.1  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    0.00038   19.1   0.0      0.087   11.4   0.0    2.9  3  Mqo            Malate:quinone oxidoreductase (Mqo)
      0.005   17.0   0.4      0.011   16.0   0.4    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0077   15.4   0.0      0.011   14.9   0.0    1.2  1  FAD_binding_2  FAD binding domain
  ------ inclusion threshold ------
       0.11   13.3   0.1       0.26   12.1   0.1    1.6  1  GARS_N         Phosphoribosylglycinamide synthetase, N domain
       0.12   13.0   0.4        1.8    9.1   0.1    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.16   12.0   0.1        1.5    8.8   0.1    2.1  2  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.7   0.0   6.4e-64   1.4e-60       2     351 ..       7     394 ..       6     395 .. 0.84

  Alignments for each domain:
  == domain 1  score: 205.7 bits;  conditional E-value: 6.4e-64
                 EEEECTSHHHHHHHHHHHHTT....EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHH CS
         DAO   2 vviiGGGiiGlstAyeLarrg....VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeel 96 
                 ++iiGGGiiGl+  y L r +     ++lek++++g+++S++nsg+lh+gl+ ++ +s +a+l+ ++++ +  +++e+g  i ++ +G+l++a +e+el
  CCG92736.1   7 IIIIGGGIIGLALGYKLLRSKkvssLIILEKEKEVGQHQSSHNSGVLHAGLY-YAVGSLKAKLAVDGIRQMVSFCRENG--IAHEICGKLVVAKEEAEL 102
                 89***************87756889**************************8.66677999******************..78**********999999 PP

                 HHHHHHHHHHHHTTTTE.EEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEE CS
         DAO  97 ealdkllallleaglda.elldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaa 193
                  +l +l +++ ++gl   ++ld++e++++ep  +g  +++++p++g+vd++++++ la ++e  G+ei+++++v+++++  g+ w+v   t  g+  + 
  CCG92736.1 103 SELHRLKKQGDANGLVGlQILDSKEMKKIEPFASG-IASIYVPEEGIVDYRQVCQVLATKIELMGGEIFREAKVVDIKK-KGRSWNV--RTVgGNFLT- 196
                 9998777777889996669****99******6435.467**************************************66.5899***..555354333. PP

                 EEEEE--GGGHHHH.HTT.CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSE.................... CS
         DAO 194 davVnaaGawsdll.gll.keldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtad.................... 270
                   +Vn+aG++ d + +l+ +  +++i+p+rg+++ +k+ ++k + +++i+pvp+++ ++ gv++t++ +g+v +G++a+                    
  CCG92736.1 197 SFLVNCAGLYCDRIcRLAmGHCPIRIVPFRGEYFEIKE-HRKYLVKNLIYPVPDPRFPFLGVHLTRMINGKVEAGPNAVlsfsregyskgsfdwrdtye 294
                 56**********77677775556799**********55.55555666*********************************9988888666666666666 PP

                 ..............EETTCSSTSCSHHHHHHHHHHHHHHSGGG..CGEEEEEEEEEE..E.TTS....SEEEEEEETEEEEEEEEECTTTHHHHHHHHH CS
         DAO 271 ..............eesgdddpevdeedidellealrklfPql..gdvlrkwaGlrp..l.pdg....lpligetpgvkglylatGhsghGltlapatG 346
                               + +++++    +++   +++a++kl+P++  +d+    +G+r+  l pdg    ++l+ +    +g++++ ++ ++G t ++a++
  CCG92736.1 295 ilsyqglwnflkryPLAAWEE-WKRSKRKSLFCKAIQKLVPEIqeQDLIAGAVGIRAqaLfPDGklvnDFLFVK---DEGVLHLLNAPSPGATASLAIA 389
                 666666655555544444444.334448888***********65588999*******76468997777666666...58******************** PP

                 HHHHH CS
         DAO 347 kllae 351
                   +++
  CCG92736.1 390 DEIVN 394
                 99876 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   3.4e-06    0.0076       1      34 [.       8      43 ..       8      48 .. 0.85
   2 ?    2.9   0.0     0.024        53      97     135 ..     168     206 ..     128     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.4e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaiel.kkagledylilEkg.nign 34
                 iIiG+G +Gla +++l + +++++++ilEk+ ++g+
   CCG92736.1  8 IIIGGGIIGLALGYKLlRSKKVSSLIILEKEkEVGQ 43
                 8*************963677889*******966665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.024
  Pyr_redox_3  97 piklfeeVesvkkedegfevetsketyeAkkviiAtGef 135
                  +i  + +V ++kk++++ +v+t  +++ +++++  +G +
   CCG92736.1 168 EIFREAKVVDIKKKGRSWNVRTVGGNFLTSFLVNCAGLY 206
                  688899**********************99999999987 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   3.9e-05     0.087       4      57 ..       6      57 ..       3      69 .. 0.90
   2 ?    2.0   0.0     0.027        60     166     219 ..     138     189 ..     128     197 .. 0.83
   3 ?    1.9   0.0     0.028        63     367     443 ..     324     395 ..     253     397 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.9e-05
         Mqo  4 dvvliGaGimsatlgvllkelepelsievlerldkvaeessnawnnaGtGHsal 57
                 +++iG+Gi+  +lg  l + +   s+ +le+ ++v++  s+  +n+G  H++l
  CCG92736.1  6 PIIIIGGGIIGLALGYKLLRSKKVSSLIILEKEKEVGQHQSS--HNSGVLHAGL 57
                699*************9999999**************99876..6889888875 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.027
         Mqo 166 vaatrieeGtdvnfgaltrqllkalekkkgvelklkhevkdlkreedgkWkvkv 219
                 +a  ++ e   v++ ++ + l++++e   g e+  + +v d+k++   +W+v++
  CCG92736.1 138 IASIYVPEEGIVDYRQVCQVLATKIEL-MGGEIFREAKVVDIKKKGR-SWNVRT 189
                 555566666679*************55.999***********99876.8*9986 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.028
         Mqo 367 drlealreflpeakkedWelvvaGqRvqvikkdeekggvlefGtevvasadgslaalLGa.sPGAstavsimlevlek 443
                   ++a+++ +pe +++d      G R q +  d    g+l    + +  +d+ +  lL a sPGA  + +i+ e++++
  CCG92736.1 324 LFCKAIQKLVPEIQEQDLIAGAVGIRAQALFPD----GKLV--NDFLFVKDEGVLHLLNApSPGATASLAIADEIVNR 395
                 446888999999999999999999999999885....4443..3444456666666666559****999999888776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.4   4.8e-06     0.011       1      38 [.       9      48 ..       9      62 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.8e-06
                   EE--SHHHHHHHHHHHCC.TE.EEEEE-SSSSSSGGG-EE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gf.dvlllekrdrlGGraasy 38
                   I+G+G+ Gl++ y L +  ++ +  +lek   +G + +s 
     CCG92736.1  9 IIGGGIIGLALGYKLLRSkKVsSLIILEKEKEVGQHQSSH 48
                   9*************8876355679999***9998655554 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.7e-06     0.011       2     175 ..       7     188 ..       6     197 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.7e-06
                    EEEE--SHHHHHHHHHHHHTTT..-EEEEESSSGGGS..GGGG--....S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S.-HHHH.HHHHH CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGl..kvavvekeqefgg..atawsq....Ggidavlspeqkkagikdspelhrtdtlkaldela.dqplv.eafve 87 
                    +i+iG+G+ GLa ++++ +  +  + +++eke+e+g   +++ s+    G   av+s ++ k+ + d     ++++++ ++e++ +++++ +++v+
     CCG92736.1   7 IIIIGGGIIGLALGYKLLRSKKvsSLIILEKEKEVGQhqSSHNSGvlhaGLYYAVGSLKA-KLAV-D----GIRQMVSFCRENGiAHEICgKLVVA 96 
                    79***************997777899********99986566663333366666664444.4444.5....4555555555555566665266777 PP

                    THHHHHHHHHHT.......T----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTT..EE CS
  FAD_binding_2  88 aapeavdeLeel.......gvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedg..rv 174
                    + +++++eL++l       g+   +     +d +e+ +  + a   ++ +++ +e +v+ ++++ +l+++++ +g +++ +++++++  +++   v
     CCG92736.1  97 KEEAELSELHRLkkqgdanGLVGLQ----ILDSKEMKKIEPFASGIASIYVP-EEGIVDYRQVCQVLATKIELMGGEIFREAKVVDIKKKGRswNV 187
                    8888999999985555444333333....88888888888887677777776.6899999999999999999999999999999999775545544 PP

                    E CS
  FAD_binding_2 175 t 175
                    +
     CCG92736.1 188 R 188
                    4 PP

>> GARS_N  Phosphoribosylglycinamide synthetase, N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00012      0.26       3      58 ..       7      91 ..       6     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
                EEEEESSHHHHHHHHHHTTSTTESEEEEEE--CGG.............................TTHHHHHHHHHHCTESEEEE- CS
      GARS_N  3 vLvvGsGGRehalawklaqspkvekvyvapgNagt.............................edlealvefakeekidlvvvG 58
                ++++G+G    al  kl +s+kv++++++ + + +                             + ++++v+f++e++i   ++G
  CCG92736.1  7 IIIIGGGIIGLALGYKLLRSKKVSSLIILEKEKEVgqhqsshnsgvlhaglyyavgslkaklavDGIRQMVSFCRENGIAHEICG 91
                89****************************9998887888888888887777777777666655445589999999999876666 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00082       1.8       2      26 ..       7      31 ..       6      46 .. 0.73
   2 ?    1.3   0.0      0.23   5.1e+02      42      72 ..     154     184 ..     151     191 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00082
                EEEECSSHHHHHHHHHHHHTTSEEE CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVt 26
                ++++GgG igl l+  l + +k  +
  CCG92736.1  7 IIIIGGGIIGLALGYKLLRSKKVSS 31
                79************99977654333 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHTTEEEECSEEEEEEEEETTS CS
   Pyr_redox  42 askilqeklekngievllntkveeiegsedg 72 
                 + ++l++k+e +g e+  ++kv+ i+++++ 
  CCG92736.1 154 VCQVLATKIELMGGEIFREAKVVDIKKKGRS 184
                 678899999*****************99875 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00065       1.5       2      37 ..       9      42 ..       8      54 .. 0.78
   2 ?    0.5   0.0      0.23   5.3e+02     120     144 ..     171     195 ..     153     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00065
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsep.g 37
                   i+G+G+ Gla+  +Ll++   k+  ++ + ++++  g
     CCG92736.1  9 IIGGGIIGLALGYKLLRS---KKVSSLIILEKEKEvG 42
                   9*****************...5788888888854425 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.23
  NAD_binding_9 120 hraevvdleeradgqavlladgasl 144
                     +a+vvd++++++++ v++ +g+ l
     CCG92736.1 171 REAKVVDIKKKGRSWNVRTVGGNFL 195
                    5689***********9999888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2746.99
//
Query:       CCG92737.1  [L=310]
Description: UDP-glucose 4-epimerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-15   57.0   0.0    2.4e-15   56.7   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
    0.00016   21.2   0.1     0.0035   16.8   0.1    2.4  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
      0.032   13.4   0.0      0.041   13.0   0.0    1.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
       0.14   11.1   0.2       0.92    8.5   0.0    2.1  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
       0.17   11.9   0.0       0.35   10.8   0.0    1.5  1  PAC2             PAC2 family


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   6.7e-19   2.4e-15       1     231 [.       3     228 ..       3     252 .. 0.88

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 6.7e-19
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HHHHHHSHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfkeeqpdavihlAa.vggvaassedpadfiek 90 
                 il tG++ f G  ++k lle+g+ev+g+  +++++ ++ +++         ++ve     +++ ++l+k++ +d+  h +a v++++ ++ d    +e+
  CCG92737.1   3 ILFTGGSSFTGFWFCKILLERGHEVVGVLTKKRNDYEGIRKKRidylsvhmDFVEEAPFGSEKGRNLLKTKTFDVLCHHGAyVKDYKSENFDWLFALEN 101
                 788*********************77765554444444444445999999999999999999*****************999**********999**** PP

                 HTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHH CS
   Epimerase  91 nlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipal 189
                 n++  +++l+ ++++gv  ++  +S  v+ +++ +       ++pl+  spY+++K +  ++  +ya  ygl    + + n +G +    e++r+ ++l
  CCG92737.1 102 NTKHIQEVLSLCKEHGVGTIILTGS--VFEPNEGI------GDSPLRAFSPYGLSKGLTAEVFNYYATVYGLTLGKFVIPNPFGIF----EEKRFTFYL 188
                 *****************99999999..88866664......45599****************************************....********* PP

                 HHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT CS
   Epimerase 190 irkilegkqevtllgdgtalRdflyveDvaeaillvlehvda 231
                 i++ +++k    ++ + +  Rd +  + +a ++++++e+  a
  CCG92737.1 189 IENWKRKK--TAIVQTPNYIRDNIPCDLLAHCYCRFIEKMHA 228
                 ****9877..88889999999998888888888888888655 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   9.8e-07    0.0035       1     179 [.       4     171 ..       4     198 .. 0.71
   2 ?   -1.8   0.0      0.44   1.6e+03     282     327 ..     225     270 ..     207     275 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.8e-07
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTT.SH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfe.kP 95 
                    L TG++ f G ++++ Lle+g+ev+g+  ++ + + g i++   ++   l+ ++ +++     s++ ++ll+   +d   + +A     +s + + 
     CCG92737.1   4 LFTGGSSFTGFWFCKILLERGHEVVGVLTKKRNDYEG-IRK---KRIDYLSVHMDFVEEAPFGSEKGRNLLKTKTFDVLCHHGAYVKDYKSENfDW 95 
                    67************************98877776533.333...3333566788999999999999999999999999999999865444433133 PP

                    HHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSS.B-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEE CS
  GDP_Man_Dehyd  96 eytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevp.qtEttpfyPrsPYaaaKlyadwivvnyreayglfavngi 179
                       +e+n    +++L +++++g+          t  + G+v e      + p+++ sPY+ +K     +   y   ygl     +
     CCG92737.1  96 LFALENNTKHIQEVLSLCKEHGVG---------TIILTGSVFEPNeGIGDSPLRAFSPYGLSKGLTAEVFNYYATVYGLTLGKFV 171
                    556678888888888888888763.........2233344433331235788888888888888888888888888888765555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.44
                    ....TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHH CS
  GDP_Man_Dehyd 282 rakesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfee 327
                    +++++++++ + +p+yf +++  + l   + + ++ gW+  v+++e
     CCG92737.1 225 KMHAEKQKYCKANPSYFIESQGAFALRVSREVSNRTGWHCAVELKE 270
                    4456677788999999999999999999999999999999988876 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.1e-05     0.041       1     126 [.       3     124 ..       3     162 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE-.-----HHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfha.AAlKhVPlv 93 
                      +l tG++   G  +++ +l++  + + +l ++ +    i+k+  + l + ++++   +  g+ + ++    +l++ + dv+ h  A +K     
       CCG92737.1   3 ILFTGGSSFTGFWFCKILLERGHEVVGVLTKKRNDYEGIRKKRIDYL-SVHMDFVEEAPFGSEKGRN----LLKTKTFDVLCHHgAYVKDYKSE 91 
                      7899999999******************************9964433.4466666666667655555....55555667766650556999999 PP

                      HHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEE CS
  Polysacc_synt_2  94 eenpleaiktNvlgtenvieaaieagvkkvvli 126
                      ++ +l a+++N    ++v++ ++e+gv +++l 
       CCG92737.1  92 NFDWLFALENNTKHIQEVLSLCKEHGVGTIILT 124
                      999**************************9985 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00026      0.92       3     117 ..       6     127 ..       4     134 .. 0.64
   2 ?   -0.3   0.0      0.12   4.3e+02     180     249 ..     177     243 ..     174     249 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00026
   3Beta_HSD   3 tGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk.viegDvtdkd.....kleea..legvdvvihlaslvdvagkltedei..mkv 91 
                 tGg+ F G   +k L+++++ + v vl ++ ++     ++k +++   ++ D  +++     k ++   ++  dv+ h  ++v+  +  ++d +   + 
  CCG92737.1   6 TGGSSFTGFWFCKILLERGH-EVVGVLTKKRNDYE--GIRKKRIDYlSVHMDFVEEApfgseKGRNLlkTKTFDVLCHHGAYVKDYKSENFDWLfaLEN 101
                 78888888888888888874.55556554444443..33333333233334443332011112333311456789999999999999899997622577 PP

   3Beta_HSD  92 nvkGTrnvleacvkagvrvlvYtSsa 117
                 n k  ++vl+ c+++gv +++ t s+
  CCG92737.1 102 NTKHIQEVLSLCKEHGVGTIILTGSV 127
                 99999****************99885 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.12
   3Beta_HSD 180 giyGegdkllvpllkqlaklglalfkigdeevlsdrvYvgNvawahilAaralqdpkkkssvagqayfis 249
                 gi+ e +++++ l+++ +++++a++++  ++ + d +  + +a+ +     +++ +k+k   a+  yfi 
  CCG92737.1 177 GIF-EEKRFTFYLIENWKRKKTAIVQT--PNYIRDNIPCDLLAHCYCRFIEKMHAEKQKYCKANPSYFIE 243
                 555.44567777777777777555554..56777888888888888777888888877777777777775 PP

>> PAC2  PAC2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.7e-05      0.35      83     119 ..     104     138 ..      90     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.7e-05
                 HHHHHHHHHHHHTTESEEEEEEEEEESS-ES..TTS- CS
        PAC2  83 efakalldwaeelgvkevvvLggldageradvphtrp 119
                 + ++++l++++e+gv ++++ g++   ++     + p
  CCG92737.1 104 KHIQEVLSLCKEHGVGTIILTGSVFEPNEG--IGDSP 138
                 589*********************976652..23444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2084.07
//
Query:       CCG92738.1  [L=181]
Description: dTDP-4-dehydrorhamnose 3,5-epimerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-62  208.8   0.0    4.7e-62  208.6   0.0    1.0  1  dTDP_sugar_isom  dTDP-4-dehydrorhamnose 3,5-epimerase


Domain annotation for each model (and alignments):
>> dTDP_sugar_isom  dTDP-4-dehydrorhamnose 3,5-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.6   0.0   2.6e-66   4.7e-62       2     167 ..       6     174 ..       5     176 .. 0.98

  Alignments for each domain:
  == domain 1  score: 208.6 bits;  conditional E-value: 2.6e-66
                      -SSTTCEEEEE-EEEETTEEEEEEEEHHHHHHHTS-----EEEEEEE.ETTBEEEEEEESSCS---EEEEEEESEEEEEEEE-BTTSTTTT-EE CS
  dTDP_sugar_isom   2 teiegvlliepkvfgDeRGfflesfneeefaeagleaefvqdnlsvs.kkgvlRGlHfqkepkaqaklvrvvrGevldvaVDlRkgSptfgkwv 94 
                      ++++g++li+ ++ +D RGff++ f+++e++++gl+ ++vq n s+s k+g+lRGlH+q  pka++k++r++rG+++dv+VDlR++S+tf  ++
       CCG92738.1   6 LPLDGAYLIDLEKKEDPRGFFARFFCKNEYTRHGLDPTIVQINTSFSlKRGTLRGLHYQIFPKAETKVIRCIRGALWDVIVDLRPESKTFLCHY 99 
                      5799****************************************************************************************** PP

                      EEEEETTT--EEEE-TTEEEEEEE-SSEEEEEEEESS---GGGEEEE-TT-TTTT---..SS.B--HHHHT-B-H CS
  dTDP_sugar_isom  95 gveLsaenkrqlyipegfahGflvlsdeaevlYkvteyyapesergirwnDpelgidw..eelilSekDkaapsl 167
                      ++eL++en+r+l++p+gfahGfl+l d++e +Y+v e+yape+ergir+nDp+l+i w  e l++SekDk++p l
       CCG92738.1 100 SCELNEENRRMLFVPKGFAHGFLTLMDNTEAFYLVGEFYAPEYERGIRYNDPALNIPWpfEPLVISEKDKSYPDL 174
                      ************************************************************999*********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1420.36
//
Query:       CCG92739.1  [L=331]
Description: Nucleoside-diphosphate-sugar epimerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-34  119.5   0.0    1.9e-34  119.2   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.6e-17   63.9   0.0    2.3e-16   60.1   0.0    2.0  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.5e-15   57.0   0.0      2e-15   56.7   0.0    1.1  1  RmlD_sub_bind    RmlD substrate binding domain
    1.1e-09   37.7   0.0    1.7e-09   37.1   0.0    1.4  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
     0.0071   15.5   0.0      0.052   12.7   0.0    2.1  2  NAD_binding_4    Male sterility protein
  ------ inclusion threshold ------
      0.021   14.4   0.2        2.6    7.6   0.0    2.6  2  NmrA             NmrA-like family
      0.056   13.5   0.1       0.15   12.1   0.1    1.7  1  BSD              BSD domain
       0.18   10.9   0.1        4.9    6.2   0.0    2.9  4  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.0   8.5e-38   1.9e-34       1     241 []       4     236 ..       4     236 .. 0.93

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 8.5e-38
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtln 97 
                 +l+tG +G+iG++lv  ++e g evig d    +++++       e  e+d++  +  er ++  ++d++ hlAa+++ +    d + ++++n  g++ 
  CCG92739.1   4 VLITGNKGYIGAHLVSLCKEYGFEVIGCDIGFFEGCHWDSIVPadEQWEMDFLSID--ERKLE--GIDVICHLAAISNDPMGELDEKLTYRINRDGSVA 98 
                 79*****************************8888887655447888999999888..66667..9*********9999999***************** PP

                 HHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHTT CS
   Epimerase  98 lleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkileg 196
                 l++ a+kag+  +l+++S++vYGk  +   +et+   p++p s+Ya +K+ +ek + ++a++  ++ + lr  + +G   ++ + + v   l++ +l+ 
  CCG92739.1  99 LAKKAKKAGIPLFLYAGSCSVYGKAGSLDLDETA---PFNPVSAYAQSKVEAEKEISQLADAS-FSPVFLRNATAFGYS-PMLRIDLVANNLLACALAL 192
                 **************************96577777...**********************9998.9*************9.8888999999999999888 PP

                 SSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 197 kqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 k ++ +l+dgt++R++++ +D+a+a+++++++++++ +++++niG
  CCG92739.1 193 K-QIRVLSDGTPWRPLVHCKDIARAFIALIQAPREKIHNQAINIG 236
                 8.******************************************9 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0     1e-19   2.3e-16       1     264 [.       5     252 ..       5     283 .. 0.76

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 1e-19
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    LiTG  G+iG++l+ l  e g+ev+g +     f+  + +++   +    + ++ + + D +        l    +d + +LAA s  +    + +
     CCG92739.1   5 LITGNKGYIGAHLVSLCKEYGFEVIGCDIGF--FEGCHWDSIVPAD---EQWEMDFLSIDERK-------L--EGIDVICHLAAISNDPMGELDEK 86 
                    9*************************86544..3334555554322...23456677665443.......3..3469**********99988888* PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-E.EESTTS-TT CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfn.hesprrget 191
                     t+++n  G + L + ++++g+     f+ a++  vYGk+ +   +Et pf+P s Ya +K+ a+  + +  +a   ++   +     +sp    +
     CCG92739.1  87 LTYRINRDGSVALAKKAKKAGIP---LFLYAGSCSVYGKAGSLDLDETAPFNPVSAYAQSKVEAEKEISQLADASFSPVFLRNATAfGYSPMLRID 179
                    ********************984...9******************************************999997666555443333799997777 PP

                    SCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EE.....E-TT-EEECHHCHHCCHH CS
  GDP_Man_Dehyd 192 fvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyv.....iatgethsvrefvelafl 264
                     v +++       al ++++ +l ++ + R   h kD+++a+ +++q+ + + ++      ++ e+++vr++v++  +
     CCG92739.1 180 LVANNLL----ACALALKQIRVLSDGTPWRPLVHCKDIARAFIALIQAPREKIHNqainiGGNEENYQVRQIVDKV-K 252
                    6666665....4555566677899***********************86544333111112455778888888753.3 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   8.9e-19     2e-15       2     203 ..       3     227 ..       1     253 [. 0.83

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 8.9e-19
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre...............eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaeav 82 
                    k+l+tG++G +G +L+ + +e g+ev++++                 +++++  +  ++ l+    dv+ ++AA  +    E +e++ y++n +++
     CCG92739.1   3 KVLITGNKGYIGAHLVSLCKEYGFEVIGCDIGffegchwdsivpadeQWEMDFLSIDERKLEG--IDVICHLAAISNDPMGELDEKLTYRINRDGS 96 
                    69***************************9999999*88887777775555555555555555..789**************************** PP

                    HHHHHHHHHCT-EE.EEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHH...H-SSEEEEEE-SEESS...SSS-HH.HHHHHHHHH- CS
  RmlD_sub_bind  83 ealAeaaaavgalL.ihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavla...agkkalivRtswvyge...kgknfv.ktmlrlaker 170
                     alA+ a+++g++L ++  +  V+  + +    e+++ +P+++Y+++K++ E+ + +   a+   + +R +  +g     + ++v +++l  a   
     CCG92739.1  97 VALAKKAKKAGIPLfLYAGSCSVYGKAGSLDLDETAPFNPVSAYAQSKVEAEKEISQladASFSPVFLRNATAFGYspmLRIDLVaNNLLACALAL 192
                    ************9846777888998888889************************9865456677899*999999855634455415788888999 PP

                    SEEEEESS-E.E--.EEHHHHHHHHHHHHHHCHH. CS
  RmlD_sub_bind 171 eelkvvaDql.gsP.TsardlAevllqllekaaee 203
                    ++++v +D +  +P  + +d+A++ ++l+++  e+
     CCG92739.1 193 KQIRVLSDGTpWRPlVHCKDIARAFIALIQAPREK 227
                    99999999652355457899999999998877664 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   7.5e-13   1.7e-09       1     162 [.       5     156 ..       5     233 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 7.5e-13
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslv.dvagkltedeimkvnvkGTrn 98 
                 ++tG +G++G++lv+   + +   ev  +D+ + +      s v  ++  e D ++ d+  + leg+dv+ hla+++ d +g+l e+  +++n  G   
  CCG92739.1   5 LITGNKGYIGAHLVSLCKEYG--FEVIGCDIGFFEGC-HWDSIVPADEQWEMDFLSIDE--RKLEGIDVICHLAAISnDPMGELDEKLTYRINRDGSVA 98 
                 69************9766666..79999**9988777.333445555579999999885..78***********99538999***************** PP

   3Beta_HSD  99 vleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNg 162
                 + + ++kag++ ++Y  s++v g+       l+ dE+ +   ++++ay++sK  aEk + +  +
  CCG92739.1  99 LAKKAKKAGIPLFLYAGSCSVYGK----AGSLDLDETAPF--NPVSAYAQSKVEAEKEISQLAD 156
                 ***********************9....333446888766..6789***********9987665 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.24   5.5e+02       1      13 [.       6      18 ..       6      20 .. 0.93
   2 !   12.7   0.0   2.3e-05     0.052      85     197 ..      63     161 ..      52     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.24
                   EE-TTSHHHHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLl 13
                   +TG  G++G++L+
     CCG92739.1  6 ITGNKGYIGAHLV 18
                   8***********9 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.3e-05
                    HHH--EEEE--SS-S..STTSSE..EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHH CS
  NAD_binding_4  85 aeevdviihsaAtvn.fdepyke..llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYe 177
                     e +dvi+h aA  n  +++++e   +r+N +G + + + akk     ++l+  +  v+g+                    +++++   +   +Y 
     CCG92739.1  63 LEGIDVICHLAAISNdPMGELDEklTYRINRDGSVALAKKAKKAGIP-LFLYAGSCSVYGKAG----------------SLDLDETAPFNPVSAYA 141
                    4789********876345677776689***************99999.9***99988888888................45788889999999*** PP

                    HHHHHHHHHHHHHHHHH--- CS
  NAD_binding_4 178 qsKalaEklvrearrrsglp 197
                    qsK++aEk + + ++ s  p
     CCG92739.1 142 QSKVEAEKEISQLADASFSP 161
                    ***********999775444 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.014        31       1      25 [.       4      28 ..       4      30 .. 0.94
   2 ?    7.6   0.0    0.0011       2.6      83     211 ..      97     239 ..      90     263 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.014
                EEESSTTSHHHHHHHHHHHHHT-EE CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkv 25
                +l++G  G++G+++v+   + g++v
  CCG92739.1  4 VLITGNKGYIGAHLVSLCKEYGFEV 28
                799*****************99998 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHS-SEEEEEE....---....GG.GT.SSS---TTTHHHHHHHHHHHHC...TS-EEEEE...E-EEGGG-BSSS-SS-BEEE-TTS.-E CS
        NmrA  83 kklvdAakeaGvkhfiySs....lgd....dndrsnaeepavphfdsKaeieeyvral...gipytfvy...agffmenflsllaqlkvgdtappedkv 167
                 ++l++ ak+aG++ f+y++    +g+    d d++    p     +sK+e e+ + +l   ++   f++   a  +   +   l+  +  + a   +++
  CCG92739.1  97 VALAKKAKKAGIPLFLYAGscsvYGKagslDLDETAPFNPVSAYAQSKVEAEKEISQLadaSFSPVFLRnatAFGYSPMLRIDLVANNLLACALALKQI 195
                 578888999999999997511112221111345555555555555679999999998887755555553211444555555556666666677777789 PP

                 EEEESS-TTS-EE-HHHHHHHHHHHHHHHHHHH.TTEEEEE-SEE CS
        NmrA 168 tllgpgnpkavlldaeeDiGafvikilkdprkl.kgkriklagnt 211
                 ++l +g p   l+ + +Di+++ i++++ pr+  ++++i++ gn+
  CCG92739.1 196 RVLSDGTPWRPLV-HCKDIARAFIALIQAPREKiHNQAINIGGNE 239
                 9999999866666.9*************97776699999887764 PP

>> BSD  BSD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   6.9e-05      0.15      21      55 ..     294     328 ..     280     330 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.9e-05
         BSD  21 dpeLrklynelVPskvseeqFWsrYfyllrahaie 55 
                 d  L++ly+ +V +k s e+F s +f +lr ++++
  CCG92739.1 294 DRGLEELYESMVKKKFSKEDFESDRFVRLRRLKKK 328
                 778***************************99976 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.084   1.9e+02       1      20 [.       4      23 ..       4      30 .. 0.84
   2 ?    6.2   0.0    0.0022       4.9      77     124 ..      65     112 ..      57     160 .. 0.90
   3 ?   -3.8   0.0       2.4   5.5e+03     234     261 ..     208     235 ..     202     240 .. 0.70
   4 ?   -2.6   0.0         1   2.3e+03     265     290 ..     295     320 ..     280     323 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.084
                     EEEETTTSHHHHHHHHHHHH CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilk 20
                     vl+tG  G iG +lv+ + +
       CCG92739.1  4 VLITGNKGYIGAHLVSLCKE 23
                     89***********9987655 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0022
                      T-SEEEE------HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEE CS
  Polysacc_synt_2  77 kvdvvfhaAAlKhVPlveenpleaiktNvlgtenvieaaieagvkkvv 124
                      ++dv+ h AA+ + P+ e     + + N  g+  +++ a++ag+  ++
       CCG92739.1  65 GIDVICHLAAISNDPMGELDEKLTYRINRDGSVALAKKAKKAGIPLFL 112
                      89***************************************9998776 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.4
                      EEHHHHHHHH..........SSSS-EEE CS
  Polysacc_synt_2 234 vkivdlakalielsgleekkeedieiki 261
                      v+ +d+a+a+i+l++   +k ++ +i+i
       CCG92739.1 208 VHCKDIARAFIALIQAPREKIHNQAINI 235
                      6678899999988877666545555544 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1
                      -TT--SS-EEE-GGGGGGEEE-SSEE CS
  Polysacc_synt_2 265 RpGEklyEeLlieeesveetelekil 290
                      R  E lyE++++++ s+e  e ++++
       CCG92739.1 295 RGLEELYESMVKKKFSKEDFESDRFV 320
                      55599999999988887777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2326.42
//
Query:       CCG92740.1  [L=265]
Description: Nucleoside-diphosphate-sugar pyrophosphorylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-19   69.5   0.0    1.1e-18   67.7   0.0    1.7  1  NTP_transferase  Nucleotidyl transferase
    4.1e-06   27.3   0.0    5.1e-06   26.9   0.0    1.3  1  NTP_transf_3     MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   1.3e-22   1.1e-18       4     192 ..      10     209 ..       8     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 1.3e-22
                      EE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT......................SEE CS
  NTP_transferase   4 ILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg......................vev 75 
                      +L+GG GtRL+  t  ++k++v++++  +++ + l+  ++ g+++  + +  ++s+++++++++   f+                       e+
       CCG92740.1  10 VLCGGMGTRLREETEFRPKPMVTIGKH-PILWHILQSYSKFGFRR-FILCLGYKSEMIKSYFHNFFSFNndctinlknnktvihesieqidWEI 101
                      8************************99.*****************.999999*************99999999999999999999999988677 PP

                      EEEEESS--BGGHHHHHTHHHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTSBEEEEECS-SSH CS
  NTP_transferase  76 lialepegkgtAdAvalaaelledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGvieadeegrverfvEKPkea 169
                      ++a+  e+  t   +a+aa+    ++  e++ v  gD l++ ++ + + ++ ++++    +  i  v++++++G  e+d+ ++v+ f EKP+ +
       CCG92740.1 102 TMAYTGERSMTGSRIAQAAKKYVGDS--EYFGVTYGDGLTDVNLADEFYFHLNHKK----IGTILGVNPPSRFGELEVDG-DQVICFREKPDFE 188
                      77777777789999999999888887..59**************************....56667789***********8.69**********9 PP

                      SHCSEECCSEEEEETTHHHHHHH CS
  NTP_transferase 170 kaselassGiYvfnsevllflak 192
                      +  ++++ G ++f +e l +l +
       CCG92740.1 189 N--DWINGGYFFFRREFLSYLSE 209
                      9..9*********9999988844 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   5.7e-10   5.1e-06       2      49 ..       9      63 ..       8     155 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 5.7e-10
                  EEEEESS-TTTTT.....THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSH..C CS
  NTP_transf_3  2 viLAGGrSsRmgg.....dKallplggkpllervldalraagvdevvvvggd..e 49
                   +L+GG ++R+ +     +K+++ +g+ p+l+++l++ ++ g+++ +++ g+  e
    CCG92740.1  9 FVLCGGMGTRLREetefrPKPMVTIGKHPILWHILQSYSKFGFRRFILCLGYksE 63
                  69*********8545667*******************************998423 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2016.32
//
Query:       CCG92741.1  [L=134]
Description: hypothetical protein MFUM_760007 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-11   42.9   0.0    5.3e-11   42.7   0.0    1.1  1  Y1_Tnp    Transposase IS200 like


Domain annotation for each model (and alignments):
>> Y1_Tnp  Transposase IS200 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0     3e-15   5.3e-11      40      96 ..       3      59 ..       1      77 [. 0.89

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 3e-15
      Y1_Tnp 40 vkilelelmpDHvHllvelppklsiskivkalkgassrlinkefpelkkkklkkesl 96
                 ++ el++++DH+Hll+ lp +++is++v++lk +ssrl+++ef+ +  +  +k+s+
  CCG92741.1  3 QQLFELSGESDHLHLLLALPANHEISRFVNNLKTTSSRLLRREFATMVVRFSRKPSF 59
                57899***************************************9998876666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1041.15
//
Query:       CCG92742.1  [L=115]
Description: hypothetical protein MFUM_760008 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 912.22
//
Query:       CCG92743.1  [L=42]
Description: hypothetical protein MFUM_760009 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       149  (0.00831056); expected 358.6 (0.02)
Passed bias filter:                      125  (0.00697194); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 291.94
//
Query:       CCG92744.1  [L=1292]
Description: hypothetical protein MFUM_760010 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0094   15.7   0.0      0.022   14.5   0.0    1.6  1  IstB_IS21   IstB-like ATP binding protein
  ------ inclusion threshold ------
       0.01   15.8   0.6       0.05   13.5   0.1    2.3  2  NACHT       NACHT domain
      0.018   15.3   0.0      0.075   13.3   0.0    2.0  2  AAA_22      AAA domain
      0.049   14.0   0.0       0.26   11.7   0.0    2.2  1  AAA_16      AAA ATPase domain
        0.2   10.8   0.0       0.73    9.0   0.0    1.5  1  KAP_NTPase  KAP family P-loop domain


Domain annotation for each model (and alignments):
>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   6.3e-06     0.022      50      90 ..     188     228 ..     182     301 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.3e-06
   IstB_IS21  50 ivllGpsGvGKshlaialgveavraglsvlfvrvedLveel 90 
                 ++++G  G+GK+hl + + ++   +g s+lfv ++++  ++
  CCG92744.1 188 LLVIGEWGTGKTHLLCDVTQDRLDRGQSTLFVLAKNFQGSV 228
                 789****************************9887654443 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.4e-05      0.05       3     146 ..     188     319 ..     186     333 .. 0.62
   2 ?   -1.2   0.0      0.48   1.7e+03      27      58 ..     486     512 ..     479     529 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-........-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS- CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna.....rsladllfsqlpepaapvsevwavllelperlLlilDglDelvtd 96 
                 +++ Ge G GKT+Ll+ + ++  ++ +      +v+  +++     + +     r     +f+ l e+a+          e  er++ ilDg++e +++
  CCG92744.1 188 LLVIGEWGTGKTHLLCDVTQDRLDRGQST---LFVLAKNFQGSVVAEICkrldaRLKVAKIFDLLEELAS----------ESDERAVVILDGVNEGHRH 273
                 7899*************998876666444...44444444333333222112322222233333333333..........55669**********9994 PP

                 TCH.........HHHHHCTTTTT--EEEEEEECCCHHH..HCTTSSCE..EE CS
       NACHT  97 lgqkekqpvrtlLselirkkllpeasllltvrpralrd..leeqleeaivle 146
                       +++   ++ l+     p+  l++++r+   +    ++ le+ +v+ 
  CCG92744.1 274 E----WRKAVATFQALVAD--RPNIGLIVSCRTPFESIalKKKNLEKFHVIR 319
                 4....44777778888888..8888888888886665543444555555555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.48
                 S-SCCCC-SEEEEEETTTTTTS-...-HCHHH CS
       NACHT  27 gklpqgafklvFflslrelsrsgnarsladll 58 
                  +  + +f++vF l+ +++s++     +a++l
  CCG92744.1 486 TNSRH-KFRVVFRLPYQRFSDHL----IARYL 512
                 34444.59***********9983....33333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.1e-05     0.075       8     100 ..     188     267 ..     186     302 .. 0.76
   2 ?   -2.7   0.0       1.8   6.5e+03      77     114 ..     433     473 ..     399     498 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.1e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEa 100
                 l+v+Ge GtGKT+ll  +++    +      + +++fv +++     ++  e+++ l+ +l     +   ++++le+ +++ + ++++i+D +
  CCG92744.1 188 LLVIGEWGTGKTHLLCDVTQDRLDR------GQSTLFVLAKNFQ--GSVVAEICKRLDARL-----KVAKIFDLLEELASESDERAVVILDGV 267
                 68************99999887654......9999999999999..788888888888544.....446666666666666666667888865 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
      AAA_22  77 ell.ealeqalraravielliiDEaqhlr.s..eealeeLrs 114
                  ++ e l++++++ ++   +i  + q+l  s   ++l eLr+
  CCG92744.1 433 PCMaENLRDYVSRLQA-DRIIAANYQKLEpSrrRQLLDELRT 473
                 5666788888888888.8888888888876245777777764 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.1e-05      0.26      26      99 ..     187     254 ..     177     296 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.1e-05
      AAA_16  26 lvllsGesGvGKsslvrellr.alekdg.giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawre 99 
                  +l++Ge G+GK+ l+  + + +l +    +f+ +k+ q       s++a+++ + +l + l+ ++  ++le+ + 
  CCG92744.1 187 QLLVIGEWGTGKTHLLCDVTQdRLDRGQsTLFVLAKNFQG------SVVAEIC-K-RLDARLKVAKIFDLLEELAS 254
                 589*************555551565554577777777777......3444444.2.22222222223333333333 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0002      0.73      25      69 ..     190     232 ..     180     288 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0002
  KAP_NTPase  25 LygkWGsGKssllnkledelkefakpvrflfaefnawsfkggdda 69 
                 + g+WG+GK++ll  + ++  ++   ++ lf+ ++ +  +   ++
  CCG92744.1 190 VIGEWGTGKTHLLCDVTQDRLDR--GQSTLFVLAKNFQGSVVAEI 232
                 669**********9999888877..67777777777766544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.85u 0.26s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 8985.69
//
Query:       CCG92745.1  [L=42]
Description: hypothetical protein MFUM_760011 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       170  (0.00948185); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 352.00
//
Query:       CCG92746.1  [L=46]
Description: hypothetical protein MFUM_770002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 340.25
//
Query:       CCG92747.1  [L=429]
Description: Methane monooxygenase subunit alpha [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.8e-153  509.8   0.3   4.3e-153  509.6   0.3    1.0  1  Monooxygenase_B  Monooxygenase subunit B protein
  ------ inclusion threshold ------
      0.072   13.1   0.2       0.63   10.1   0.0    2.3  2  DUF1573          Protein of unknown function (DUF1573)
       0.18   12.1   0.1       0.38   11.1   0.1    1.5  1  DUF11            Domain of unknown function DUF11


Domain annotation for each model (and alignments):
>> Monooxygenase_B  Monooxygenase subunit B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  509.6   0.3  7.3e-157  4.3e-153       1     380 []      40     421 ..      40     421 .. 0.99

  Alignments for each domain:
  == domain 1  score: 509.6 bits;  conditional E-value: 7.3e-157
                      -SSSS-HHHHHSSEEEEEEEES...-SEEETT-EEEEEEEEEE-TT--TTS--SSSEEEEEESSSTTEEEEEEEETTEE-.SS-B---TT-EEE CS
  Monooxygenase_B   1 GeksqeaflrmrTiqfYDvkws...keevkvneeltitGkvhvledWPeavekpevsflnvgePgPvlvrkesvvngkfv.prsvslelGedYe 90 
                      G+ksqeaflrmrT++f+D+++s   +++vkv++e+t+tGkv+++++WP++++++++sf+n+++PgP+++rk+ +vn+k++ ++sv le+G+ Ye
       CCG92747.1  40 GAKSQEAFLRMRTVTFFDTRFSftpNNRVKVGDEFTCTGKVMLMPTWPQEIPFSGISFFNFFVPGPQVLRKAIFVNEKYFqFNSVVLEKGGVYE 133
                      89********************99999***************************************************9889************ PP

                      EEEEEEE-S-EEEEEEEEEEESSS-EEEEEEEEEEEES-GGG---EEE-TTS-EEETTTTTHHHHHHHHHHHHHHHHHHHHHHHSS--SHHHHH CS
  Monooxygenase_B  91 fkvvlkaRrpGtyhvhpmlnvedaGplvGpgkwvtiegdasdFtnpvklltGetvdletyglsrviawhllwlvlgvawllywvrrplflprll 184
                      +k+v++aR+pG ++v+pm+++e+aGp++Gp++++tieg+   Ftnpvk+l G+t+dle+yg++r+iaw+ll+ +++v wl+yw+++p f++rl 
       CCG92747.1 134 YKMVNQARTPGIWPVGPMVSMEEAGPFIGPEEFLTIEGSGAGFTNPVKTLLGNTIDLENYGEGRMIAWTLLTSAIAVVWLVYWCSKP-FTRRLG 226
                      ***************************************************************************************.****** PP

                      HHHSS-SSSSS-TTHHHHHHHHHHHHHHHHHHHHHHHCCSS---------B---------.--SEEEEEEEEEEESS-SEEEEEEEEEE-SSS- CS
  Monooxygenase_B 185 aveagkeeelitkkdrkvglvvlvlvllivlvgyavtekkypitvPlQaglkkieplplelkatvkvevekatykvpgralelklevtNkgdep 278
                       v+ag++e+l++++dr+v+++++++++++v++++++t+++ypit+P+Q++++ i+plp+e +a +++ev++aty+vpgr+l+++l+v+N gd+p
       CCG92747.1 227 LVAAGRKEDLFSPMDRQVCFLFTIGTIVLVAAAAMITKAQYPITIPIQETKYYIKPLPPE-PALIQAEVTDATYDVPGRTLSFHLQVKNIGDKP 319
                      ************************************************************.********************************* PP

                      EEEEEEE-SS-EEE-TTT..----S---CCCEETT-EEES--S-B-TT-EEEEEEEEE-CHHHHTTGGGGGGSS--EEEEEEEEEETTS-EEEE CS
  Monooxygenase_B 279 vrlgefqtanvrflnpdv..keaesdypdellaeeglsvsdeepiapGetrtleveaqdaaweverLadliydadsrfgGLlffvdeegerqis 370
                      v l+ef tanvrflnpdv  ++++++ p+  +++  ++v+++epi+pGet+tlev++q+a+we++rL+ +++++++rfgGLlff+d++g+rq+ 
       CCG92747.1 320 VVLKEFLTANVRFLNPDVpgNTWNENNPE--VNGGPMRVTPSEPINPGETKTLEVSMQSAEWENQRLT-MYHESTNRFGGLLFFTDTSGTRQVF 410
                      *******************9*********..************************************9.99*********************** PP

                      EEEEE.-EEE- CS
  Monooxygenase_B 371 eiagp.viPkF 380
                      +ia++ viPkF
       CCG92747.1 411 AIADQiVIPKF 421
                      *****99***9 PP

>> DUF1573  Protein of unknown function (DUF1573)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.4   1.4e+04       5      30 ..     116     141 ..     114     143 .. 0.68
   2 ?   10.1   0.0    0.0001      0.63      19      82 ..     306     387 ..     300     395 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.4
     DUF1573   5 ettidfgkieegekvtatFeftNtgk 30 
                 e+ ++f+++  ++   +++++ N+  
  CCG92747.1 116 EKYFQFNSVVLEKGGVYEYKMVNQAR 141
                 56677888866666777888888765 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0001
     DUF1573  19 vtatFeftNtgkaplvitnv.ktsCgCttpey....................pkepiapGesgkikvtfnakgrpgefnktvtvy 82 
                  +   +++N g++p+v+++  +++   ++p++                    p epi+pGe+ +++v++++++     n+++t y
  CCG92747.1 306 LSFHLQVKNIGDKPVVLKEFlTANVRFLNPDVpgntwnennpevnggpmrvtPSEPINPGETKTLEVSMQSAE---WENQRLTMY 387
                 55667788888888888776577788888887888888888888888888889****************9998...445555555 PP

>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   6.3e-05      0.38      12      80 ..     302     378 ..     292     388 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.3e-05
       DUF11  12 pGdtvtytltvtNtgpasangvvvtDtlPaglayvsvsas...........qgtasaltsv...gsLeagesatlsftvrvtr 80 
                 pG t+++ l v+N g ++    v++  l a++++                 +g       v   + +++ge++tl+++++ + 
  CCG92747.1 302 PGRTLSFHLQVKNIGDKPV---VLKEFLTANVRFLNPDVPgntwnennpevNGGPMR---VtpsEPINPGETKTLEVSMQSAE 378
                 89*************9988...******99999999999966666555544222222...1334777**********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3118.54
//
Query:       CCG92748.1  [L=245]
Description: Methane monooxygenase subunit beta [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.8e-119  397.2  22.4   3.2e-119  397.0  22.4    1.0  1  AMO       Ammonia monooxygenase


Domain annotation for each model (and alignments):
>> AMO  Ammonia monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.0  22.4  1.8e-123  3.2e-119       3     238 .]       6     241 ..       4     241 .. 0.99

  Alignments for each domain:
  == domain 1  score: 397.0 bits;  conditional E-value: 1.8e-123
                 -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSSSS-GGG--TTHHHHHHHHHHSHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTT CS
         AMO   3 skeealklsrkidlivlvilflvvlggyhihqmllaGdWdfWvdwkdrrlwpvvtpivsitfpaavqavlWekfrlplGatlcvlglllgeWlnryfnf 101
                 +++ea +l+rk+d++vlv +fl++l+g+hihqml+aGdW+fW+dwkdr++wpvv+pi++itfpaa+qa+lW+kf+ p+Gat++++gl++g+W+nry+nf
  CCG92748.1   6 AEAEARALERKFDIVVLVSMFLAILSGFHIHQMLTAGDWSFWIDWKDRMWWPVVAPIMDITFPAACQAILWTKFKAPIGATFSCAGLFFGQWMNRYWNF 104
                 6899*********************************************************************************************** PP

                 TTTS---HHHH-----HHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHGGGG-EEEETTEEEEHHHHHHHHS-----------TTTTTTSS CS
         AMO 102 ygwtyfPvnlvfPstlipsalvldvvlllsksylltalvGglafgllfyPanWpllapfhlpveaegvllsladligfeyvrtgtPeyirlvekGtlrt 200
                 +gw+++P+n+vfP+tl+p+a+vld vl++++++++tal+Gg+ +g+lfyP+nWp++ap+h+pve+ g+l+s+adli+++y+rt+tPeyir+ve+Gt+r+
  CCG92748.1 105 WGWAHYPLNFVFPETLLPQAIVLDGVLMITNNFVVTALIGGELWGWLFYPSNWPMIAPYHVPVEYYGQLMSVADLIQYQYIRTSTPEYIRMVETGTMRS 203
                 *************************************************************************************************** PP

                 TTT---SCCCHHHHHHHCHCCCHHCCHHHHHHHHHB-X CS
         AMO 201 fgkdvvpvaaffsgfvsiliyllwwylGkvfstekyvk 238
                 f+++v++v+affsgf+s+++y++wwy+G +f+++k++k
  CCG92748.1 204 FAGGVLGVSAFFSGFCSVIMYFIWWYFGYFFGWTKFIK 241
                 ************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1740.44
//
Query:       CCG92749.1  [L=436]
Description: Methane monooxygenase subunit alpha [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.3e-151  502.1   0.5   9.7e-151  501.9   0.5    1.0  1  Monooxygenase_B  Monooxygenase subunit B protein
     0.0085   16.1   0.1      0.068   13.2   0.1    2.2  1  DUF1573          Protein of unknown function (DUF1573)


Domain annotation for each model (and alignments):
>> Monooxygenase_B  Monooxygenase subunit B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  501.9   0.5  1.1e-154  9.7e-151       1     380 []      47     428 ..      47     428 .. 0.99

  Alignments for each domain:
  == domain 1  score: 501.9 bits;  conditional E-value: 1.1e-154
                      -SSSS-HHHHHSSEEEEEEEES...-SEEETT-EEEEEEEEEE-TT--TTS--SSSEEEEEESSSTTEEEEEEEETTEE-.SS-B---TT-EEE CS
  Monooxygenase_B   1 GeksqeaflrmrTiqfYDvkws...keevkvneeltitGkvhvledWPeavekpevsflnvgePgPvlvrkesvvngkfv.prsvslelGedYe 90 
                      G+ksqeaflrmrT+ fYD+++s   +++vkv+ee+++tGkv+++++WPe++++ ++sf+n+++PgP+++rk+ +vn+k++ ++sv le+G++Y+
       CCG92749.1  47 GAKSQEAFLRMRTVVFYDTQFSfapTNRVKVGEEFSCTGKVMLMPTWPEEIPFTGISFFNFFVPGPQVLRKAIWVNEKYFqFNSVVLEKGGTYA 140
                      89********************9999****************************************************9889************ PP

                      EEEEEEE-S-EEEEEEEEEEESSS-EEEEEEEEEEEES-GGG---EEE-TTS-EEETTTTTHHHHHHHHHHHHHHHHHHHHHHHSS--SHHHHH CS
  Monooxygenase_B  91 fkvvlkaRrpGtyhvhpmlnvedaGplvGpgkwvtiegdasdFtnpvklltGetvdletyglsrviawhllwlvlgvawllywvrrplflprll 184
                      +k+vl+aR pG ++++pml++e+aGp++Gp++++tieg  + F npvk+l G+tvdle+yg++rvi+w+++++++gv wl yw+++p f++rl 
       CCG92749.1 141 YKMVLQARNPGIFPMGPMLSMEGAGPFIGPEEFLTIEGTKGSFANPVKTLLGNTVDLENYGTARVITWTIFTTLIGVVWLGYWLAKP-FTRRLG 233
                      ***************************************************************************************.****** PP

                      HHHSS-SSSSS-TTHHHHHHHHHHHHHHHHHHHHHHHCCSS---------B---------.--SEEEEEEEEEEESS-SEEEEEEEEEE-SSS- CS
  Monooxygenase_B 185 aveagkeeelitkkdrkvglvvlvlvllivlvgyavtekkypitvPlQaglkkieplplelkatvkvevekatykvpgralelklevtNkgdep 278
                       v+ag++eel+++ dr+v+++++v++++iv++++ +t+++yp+t+P+Q++++ i+plp+e ++ +++ev++aty+vpgr+l+++++v+N gd+p
       CCG92749.1 234 LVAAGRKEELFNPLDRQVCFLFTVGTIVIVAAAALITKAQYPVTIPIQETKYYIKPLPPE-PTLIQAEVTDATYDVPGRTLSFHIQVKNVGDKP 326
                      ************************************************************.********************************* PP

                      EEEEEEE-SS-EEE-TTT..----S---CCCEETT-EEES--S-B-TT-EEEEEEEEE-CHHHHTTGGGGGGSS--EEEEEEEEEETTS-EEEE CS
  Monooxygenase_B 279 vrlgefqtanvrflnpdv..keaesdypdellaeeglsvsdeepiapGetrtleveaqdaaweverLadliydadsrfgGLlffvdeegerqis 370
                      v l+ef tanvrflnpd+  +++++ +p+  +++  ++vs++epi+pGet+t+ev++q+a+we++rL+ +++++++rfgGLlff+d++g+rqi+
       CCG92749.1 327 VVLKEFLTANVRFLNPDIpgNTWNPSFPE--VNGGPMKVSPSEPINPGETKTIEVSMQSAEWENQRLT-MYNETTNRFGGLLFFTDPSGTRQIY 417
                      ******************99*********..************************************9.99*********************** PP

                      EEEEE.-EEE- CS
  Monooxygenase_B 371 eiagp.viPkF 380
                      +ia++ viPkF
       CCG92749.1 418 AIADQiVIPKF 428
                      *****99***9 PP

>> DUF1573  Protein of unknown function (DUF1573)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   7.6e-06     0.068      18      86 ..     312     398 ..     300     404 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.6e-06
     DUF1573  18 kvtatFeftNtgkaplvitnv.ktsCgCttpey....................pkepiapGesgkikvtfnakgrpgefnktvtvyante 86 
                 + +  ++++N g++p+v+++  +++   ++p++                    p epi+pGe+ +i+v++++++     n+++t y +t+
  CCG92749.1 312 TLSFHIQVKNVGDKPVVLKEFlTANVRFLNPDIpgntwnpsfpevnggpmkvsPSEPINPGETKTIEVSMQSAE---WENQRLTMYNETT 398
                 567778899999999999886588888999998888889999999999999999*****************999...5566777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.51
# Mc/sec: 2556.95
//
Query:       CCG92750.1  [L=266]
Description: PmoA1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-117  390.4  21.1   3.8e-117  390.2  21.1    1.0  1  AMO       Ammonia monooxygenase


Domain annotation for each model (and alignments):
>> AMO  Ammonia monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  390.2  21.1  2.1e-121  3.8e-117       3     237 ..      27     261 ..      25     262 .. 0.99

  Alignments for each domain:
  == domain 1  score: 390.2 bits;  conditional E-value: 2.1e-121
                 -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSSSS-GGG--TTHHHHHHHHHHSHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTT CS
         AMO   3 skeealklsrkidlivlvilflvvlggyhihqmllaGdWdfWvdwkdrrlwpvvtpivsitfpaavqavlWekfrlplGatlcvlglllgeWlnryfnf 101
                 +++ea  l+rk+d++v+v +f++++ggyhihqmllaGdW+fW+dwkdr++wpvv+pi +i+fpaavq++lW+kf++p+Gat+c++gl++g+W+nry+nf
  CCG92750.1  27 ANAEARILERKFDIVVIVSMFFAFVGGYHIHQMLLAGDWSFWTDWKDRMWWPVVAPIADIAFPAAVQSILWTKFKMPIGATFCTVGLFFGQWMNRYWNF 125
                 6789999******************************************************************************************** PP

                 TTTS---HHHH-----HHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHGGGG-EEEETTEEEEHHHHHHHHS-----------TTTTTTSS CS
         AMO 102 ygwtyfPvnlvfPstlipsalvldvvlllsksylltalvGglafgllfyPanWpllapfhlpveaegvllsladligfeyvrtgtPeyirlvekGtlrt 200
                 +gw  +P+n+vfP+tlip+a+vld vl++s+++++talvGg+ +g+lfyP+nWp++ap+h+pve+ g+l+s+adli++ey+rt+tPeyir+ve+Gt+r+
  CCG92750.1 126 WGWGTYPLNFVFPETLIPQAVVLDGVLMISNNFVVTALVGGELWGWLFYPTNWPMIAPYHVPVEYYGQLMSMADLIQYEYIRTSTPEYIRMVETGTMRS 224
                 *************************************************************************************************** PP

                 TTT---SCCCHHHHHHHCHCCCHHCCHHHHHHHHHB- CS
         AMO 201 fgkdvvpvaaffsgfvsiliyllwwylGkvfstekyv 237
                 f+++v++v+affsgfvs  +y+lww++Gk+f+++k+v
  CCG92750.1 225 FAGGVLGVSAFFSGFVSACMYFLWWFFGKFFGSTKFV 261
                 ***********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1879.98
//
Query:       CCG92751.1  [L=275]
Description: Methane monooxygenase subunit gamma [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.1e-120  398.8  14.3   8.5e-120  398.5  14.3    1.0  1  AmoC      Ammonia monooxygenase/methane monooxygenase, subuni


Domain annotation for each model (and alignments):
>> AmoC  Ammonia monooxygenase/methane monooxygenase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  398.5  14.3  4.8e-124  8.5e-120       3     244 ..       6     247 ..       4     248 .. 0.99

  Alignments for each domain:
  == domain 1  score: 398.5 bits;  conditional E-value: 4.8e-124
        AmoC   3 aassaaaaekelldakalllglavllvfyvlvrlyervfayskGldsfspefqtyWmnlllvelvlevvaalvlvgylwktrdrnldkltpkeelkryl 101
                 +a+++a++e++l+++++++lg+ +l+ +y+lv+lyer+fa++kGld++spe+qtyWmnlll+el+le++ +++++++lw trdrnl++++p eel+ry+
  CCG92751.1   6 TATTIAIPERSLFSWNRMWLGIGLLSGWYILVNLYERAFAFTKGLDYTSPEYQTYWMNLLLAELALEALSFIAVCTWLWVTRDRNLENISPVEELRRYW 104
                 6788999******************************************************************************************** PP

        AmoC 102 tlllwlvvyalavyWGasffteqdgtWhqtvirdtdftPshiiefylsyPiyiilgvaaflyaktrlPlfakglslpylvlvagplmilpnvglnewGh 200
                 +l l++vvy++++yWGas+fteqdgtWhqtvirdtdftPshiiefy+syPiyiilgv++f+ya trlP+fa+++s+py+vlv +plmi+pnvglne+Gh
  CCG92751.1 105 NLGLFIVVYTVGLYWGASYFTEQDGTWHQTVIRDTDFTPSHIIEFYQSYPIYIILGVGSFMYAITRLPMFARSFSIPYAVLVGSPLMIFPNVGLNEFGH 203
                 *************************************************************************************************** PP

        AmoC 201 tfWfmeelfvaPLhwgfvvlgWaalavlGvalqvlarlsellkk 244
                 t+WfmeelfvaPLhwgfv++gW ala++Gv+lq+++r++el+k+
  CCG92751.1 204 TRWFMEELFVAPLHWGFVAFGWGALAIMGVWLQACPRVYELIKQ 247
                 *****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1981.29
//
Query:       CCG92752.1  [L=63]
Description: hypothetical protein MFUM_790004 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 457.32
//
Query:       CCG92753.1  [L=81]
Description: hypothetical protein MFUM_790005 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 538.60
//
Query:       CCG92754.1  [L=232]
Description: DNA-binding response regulator, NarL family (REC-HTH domains) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-27   94.5   0.0    6.3e-27   94.0   0.0    1.2  1  Response_reg     Response regulator receiver domain
    5.5e-16   57.9   0.0      1e-15   57.0   0.0    1.5  1  GerE             Bacterial regulatory proteins, luxR family
    2.3e-05   23.9   0.1    4.5e-05   23.0   0.1    1.5  1  Sigma70_r4_2     Sigma-70, region 4
     0.0056   16.7   0.0      0.016   15.3   0.0    1.8  1  HTH_7            Helix-turn-helix domain of resolvase
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.25   11.2   0.0    1.6  1  Terminase_5      Putative ATPase subunit of terminase (gpP-li
       0.12   12.5   0.0       0.22   11.7   0.0    1.4  1  Trp_repressor    Trp repressor protein
       0.16   12.0   0.1       0.67   10.0   0.0    2.1  2  Phage_terminase  Phage terminase small subunit


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.0   2.5e-30   6.3e-27       1     112 []      10     122 ..      10     122 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 2.5e-30
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   vlivdD+ ++re+l ql++   g++++++a++++e +el+++ ++dl+l+Di++pg +Glel+k i++  p++ + +l++h+e+ +a+++l+aga +
    CCG92754.1  10 VLIVDDHTILREGLCQLINsTPGMSVCGTAKNAHEGFELIEKTQPDLVLVDISLPGKSGLELIKDIHAVYPDIAIFVLSMHEESLYAERVLRAGARG 106
                   8******************889**9999********************************************************************* PP

                   EEESSG-HHHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkale 112
                   +l+K    e+L++a++
    CCG92754.1 107 YLMKSEGGEKLIAAIQ 122
                   ************9985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0     4e-19     1e-15       2      57 .]     157     212 ..     156     212 .. 0.98

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 4e-19
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                  Ls+RE ev++l+ +G+ + +IAe+l++S kTV++++++i +KL +ks  +lv++a
  CCG92754.1 157 ALSDREFEVFQLIGKGYGSRQIAEQLSLSVKTVEAYRASIKQKLYLKSGPQLVHYA 212
                 69****************************************************98 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   1.8e-08   4.5e-05       8      54 .]     155     200 ..     155     200 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.8e-08
                   HTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   8 laeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +++L+ r+ e+f l+  +g+  ++IAe+l +s++tV+ + +  ++kL
    CCG92754.1 155 IEALSDREFEVFQLI-GKGYGSRQIAEQLSLSVKTVEAYRASIKQKL 200
                   789***********8.8********************9987777766 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.2e-06     0.016      13      38 ..     164     189 ..     158     194 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.2e-06
                 GGGSSTTTT--STTTSSSS---SSSS CS
       HTH_7  13 rvvkLleeGisiskIAkevnisRsTv 38 
                 +v++L+ +G+  ++IA+++ +s+ Tv
  CCG92754.1 164 EVFQLIGKGYGSRQIAEQLSLSVKTV 189
                 799**********************9 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.9e-05      0.25      12      34 ..     171     193 ..     167     202 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.9e-05
  Terminase_5  12 qGyrvaeIAeelglkeatVysWk 34 
                  +Gy  ++IAe l l+ +tV ++ 
   CCG92754.1 171 KGYGSRQIAEQLSLSVKTVEAYR 193
                  89*****************9995 PP

>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.7e-05      0.22      27      74 ..     150     197 ..     147     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.7e-05
  Trp_repressor  27 lTpdErealaqR.lqvvkeLLkeelsqreIaeelgvSiAtItRvsrsLk 74 
                    l+++ +eal++R ++v++ L+ +++  r+Iae+l  S+ t+   ++s+k
     CCG92754.1 150 LSISPIEALSDReFEVFQ-LIGKGYGSRQIAEQLSLSVKTVEAYRASIK 197
                    577889******889999.*******************99866655555 PP

>> Phage_terminase  Phage terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.1   2.7e+03      23      39 ..       2      18 ..       1      20 [. 0.85
   2 ?   10.0   0.0   0.00026      0.67      10      45 ..     160     195 ..     156     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.1
  Phage_terminase 23 lklkdIAkvLdvsestv 39
                     +k  +I kvL v + t+
       CCG92754.1  2 IKQEKIHKVLIVDDHTI 18
                     67889*****9999987 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00026
  Phage_terminase  10 DkAyelykEsggtlklkdIAkvLdvsestvrkWKak 45 
                      D+ +e+++  g+    ++IA+ L +s +tv  ++a 
       CCG92754.1 160 DREFEVFQLIGKGYGSRQIAEQLSLSVKTVEAYRAS 195
                      78899*************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1544.43
//
Query:       CCG92755.1  [L=369]
Description: ABC-type multidrug transport system, permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-34  119.9  16.8    1.6e-34  119.5  16.8    1.0  1  ABC2_membrane_3  ABC-2 family transporter protein
    6.7e-28   97.5  15.9    6.7e-28   97.5  15.9    2.5  3  ABC2_membrane    ABC-2 type transporter
    4.3e-24   85.3   9.2    5.9e-24   84.8   9.2    1.1  1  ABC2_membrane_2  ABC-2 family transporter protein
    0.00026   21.0  11.9    0.00026   21.0  11.9    1.8  2  ABC2_membrane_4  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5  16.8   3.6e-38   1.6e-34      11     344 ..      30     361 ..      21     362 .. 0.84

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 3.6e-38
  ABC2_membrane_3  11 Piilvlllglifsnsveddentpiavvdednsslsqqlvealeaspsvelvyevdseeeakkalkngdidgilvipkgfskdllkgesatvtvl 104
                      P+i ++++g++   ++ d  ++++a++de+++  s+++++ ++ sp +   +e+  e+++ + + ++++  +l i+  f++dll+g+s +v+++
       CCG92755.1  30 PVIQMFVFGYA---ATFDLFKVSFALYDENRTYHSREFISKFKGSPIFVFKKEIFKESQITDEILKRNVLFVLHIDRRFDRDLLSGRSGKVQLI 120
                      44444444444...344889***************************9999******************************************* PP

  ABC2_membrane_3 105 inssnlnsskailnalnsllqqlnasalvlqseatstsaninvestqleeelsnvasflvg.liliilifitasfiavsiveEkesrikelqlv 197
                      i++ n+n+++++  + n+++  +na+ l+   + ++++++ ++  ++l++++  ++ f+v+ li+i+ + ++a+ i  si++Eke ++  ++lv
       CCG92755.1 121 IDGRNSNTAAILSGYANQIIADYNAEWLK--RNGGKAPIS-QISFRALNNPNLLSQWFIVPgLIAILTFVVSAMTIGLSIAREKEMGTFDQLLV 211
                      *********99999999999999876653..333333333.2233345899999999999978888889999999999**************** PP

  ABC2_membrane_3 198 sgvsplqywlskilgdflvyllqlllill...lafglgipfg.nlglllllfllfglayialgyllsslfknsetaqilifivilllsgffggl 287
                      ++++p++++++k +  ++ +l  + lill   l+f   ipf+ n+++l l +l+f++a+i + +++ss+ +++  a + +f+++++ ++++g++
       CCG92755.1 212 TPLRPIEILIGKTIPGLIFALMEATLILLaalLWFR--IPFNgNILVLYLGLLFFLFAIIGIELAISSIASTQQQALLGVFFFLVPSIILSGFS 303
                      ************998888888766655554436***..****5555566*****************************9999999666667777 PP

  ABC2_membrane_3 288 fpledlpsalkwifsiiPffapglgllrli.tgdplweillsliilalfavvylllal 344
                       p+ ++p++++ +++++P+ ++      +   g  l +++  ++ l++++++ + +++
       CCG92755.1 304 TPIRNMPESIQDLTYLNPMRYFLIIARGVFlEGRGLDTLWNQYLPLLIIGLISMSFSW 361
                      89*********************99999954666778888888888888888776665 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.2    0.0003       1.4       6      39 ..       8      40 ..       4      53 .. 0.91
   2 !   97.5  15.9   1.5e-31   6.7e-28      52     209 ..     170     333 ..     146     334 .. 0.91
   3 ?   -3.9   0.7       1.6   7.3e+03     138     150 ..     350     362 ..     343     364 .. 0.46

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0003
  ABC2_membrane  6 llkreflqrwrdpslgllwrliqplllalvfgtv 39
                   l+ +e+l ++rdp +  ++ ++ p+++++vfg++
     CCG92755.1  8 LVIKEILVFIRDPRSR-FVLIVPPVIQMFVFGYA 40
                   7889************.99*************96 PP

  == domain 2  score: 97.5 bits;  conditional E-value: 1.5e-31
  ABC2_membrane  52 r.......pgllffsvlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelpvsllqalifllivyflvgldls.rfflfllllll 139
                            pgl++++++ ++ ++++++++ +e+e+g+++++lv+pl ++ +++++k++  l+++l++a+++ll +++++ ++ + +++ ++l ll+
     CCG92755.1 170 LlsqwfivPGLIAILTFVVS-AMTIGLSIAREKEMGTFDQLLVTPL-RPIEILIGKTIPGLIFALMEATLILLAALLWFRIPFNgNILVLYLGLLF 263
                    03444556999999999999.*************************.*******************************9****9777999999999 PP

  ABC2_membrane 140 talaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlqwiaylnPltyavealrsnl 209
                    +++a++++ l+is++a+++++a + ++++l+p ++lsGf  pi +mp+ +q + ylnP++y++ + r+++
     CCG92755.1 264 FLFAIIGIELAISSIASTQQQALLGVFFFLVPSIILSGFSTPIRNMPESIQDLTYLNPMRYFLIIARGVF 333
                    999*******************************************99***************9999987 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 1.6
  ABC2_membrane 138 lltalaasslgll 150
                    l+++l+++s++++
     CCG92755.1 350 LIIGLISMSFSWF 362
                    3333344444333 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   9.2   1.3e-27   5.9e-24       3     286 ..       8     367 ..       7     367 .. 0.88

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 1.3e-27
  ABC2_membrane_2   3 iakkEfrdlvrsrrfllltvllpli..............dvalaylkdlgsslqseakaikeatlaleyveaasasdeaedtdqdlkv...... 76 
                      ++ kE+  ++r++r   + ++ p+i              +v  a ++++ +++++e+ + ++ ++ + + + + +++ +  td+ lk+      
       CCG92755.1   8 LVIKEILVFIRDPRSRFVLIVPPVIqmfvfgyaatfdlfKVSFALYDENRTYHSREFISKFKGSPIFVFKKEIFKESQI--TDEILKRnvlfvl 99 
                      578***************************************************************9888776654444..444444457**** PP

  ABC2_membrane_2  77 .............................................................................vstimavlipviaalfg 93 
                                                                                                   v++++a+l  v+ a++ 
       CCG92755.1 100 hidrrfdrdllsgrsgkvqliidgrnsntaailsgyanqiiadynaewlkrnggkapisqisfralnnpnllsqwfiVPGLIAILTFVVSAMTI 193
                      *****************************************************************************99999999988877777 PP

  ABC2_membrane_2  94 adaiagEkergTlkllLskPvsRdeillgKfigglaigla.iavallatvllalaiilalgivlaledllllvvasvlllllvvflalglllSs 186
                        +ia+Eke gT  +lL +P    eil+gK i gl+ +l+   ++lla++l        + i++++   +l++++ +l++l ++ +++ l++Ss
       CCG92755.1 194 GLSIAREKEMGTFDQLLVTPLRPIEILIGKTIPGLIFALMeATLILLAALLW-------FRIPFNGN--ILVLYLGLLFFL-FAIIGIELAISS 277
                      789**********************************777777777777555.......66666665..444555553333.4479******** PP

  ABC2_membrane_2 187 varssreaaalalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdlnalgstatnllilllllavllvlgy 280
                      +a  ++++a+l +++f+v +i+ ++++ ++ +++   ++     ++l++l+p +++ ++ + ++  ++   l   ++ +l ll++ ++++ +++
       CCG92755.1 278 IAS-TQQQALLGVFFFLVPSIILSGFSTPIRNMPE--SI-----QDLTYLNPMRYFLIIARGVFLEGR--GLDTLWNQYLPLLIIGLISMSFSW 361
                      **9.8888889999999999999999988888877..44.....78***********99999998884..466889****************** PP

  ABC2_membrane_2 281 vlFkrk 286
                      +lFk++
       CCG92755.1 362 FLFKKR 367
                      ***995 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.4   6.2e+03      22      46 ..      26      50 ..      22      59 .. 0.58
   2 !   21.0  11.9   5.8e-08   0.00026      53     176 ..     178     296 ..     157     301 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.4
  ABC2_membrane_4 22 allvpllallyfnllgktgldpaef 46
                     +++ p++ +++f ++++ +l++ +f
       CCG92755.1 26 LIVPPVIQMFVFGYAATFDLFKVSF 50
                     4445566666666666555555554 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 5.8e-08
  ABC2_membrane_4  53 gftlllllplilgiiasylifrEeqndtlknLltiPvsrtklllaKlivllllsvllmlvtflitvlfallsgfvgfsvklvlellkkclelgl 146
                      +  + +l  ++ ++  + +i rE++ +t+ +Ll+ P    ++l++K i  l+++++      ++ +l+all   ++f+++ ++  l   l+++l
       CCG92755.1 178 PGLIAILTFVVSAMTIGLSIAREKEMGTFDQLLVTPLRPIEILIGKTIPGLIFALMEA----TLILLAALLWFRIPFNGNILVLYLG--LLFFL 265
                      44455566667777899********************************999866665....4556777777888898765443333..33333 PP

  ABC2_membrane_4 147 lvff.avlpiialvllkksyvlpliltlvyt 176
                      + ++ + l+i  +++ +++ +l++ + lv +
       CCG92755.1 266 FAIIgIELAISSIASTQQQALLGVFFFLVPS 296
                      3333134556778889999999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2774.42
//
Query:       CCG92756.1  [L=374]
Description: putative transporter subunit: permease component of ABC superfamily [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-37  127.2  26.3    9.6e-37  126.9  26.3    1.0  1  ABC2_membrane_3  ABC-2 family transporter protein
    4.2e-28   98.4  14.6    6.6e-28   97.8  14.6    1.2  1  ABC2_membrane_2  ABC-2 family transporter protein
    3.5e-18   65.8  33.0    1.3e-17   64.0  23.0    2.8  3  ABC2_membrane    ABC-2 type transporter
    0.00094   19.2  14.8    0.00094   19.2  14.8    2.9  3  ABC2_membrane_4  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9  26.3   2.1e-40   9.6e-37       8     343 ..      27     365 ..      25     367 .. 0.88

  Alignments for each domain:
  == domain 1  score: 126.9 bits;  conditional E-value: 2.1e-40
  ABC2_membrane_3   8 lllPiilvlllglifsnsve.ddentpiavvdednsslsqqlvealeaspsvelvyevdseeeakkalkngdidgilvipkgfskdllkgesat 100
                      + + ++l  +l+++f+++ + d+ ++pi+vv e  +sls+++ + l++s +++  ++++++++a+ ++++g + gi+ +  + +++ l +   t
       CCG92756.1  27 FGIAFVLPSILLFLFGYGISlDAIHLPIGVVVERPTSLSSSFESSLKNSIYFS-PFSYETIQKAQSDFEKGRLLGIIWLRGNWNRESLAFDKGT 119
                      6788899999999999999999***********99******************.****************************999999****** PP

  ABC2_membrane_3 101 vtvlinssnlnsskailnalns.llqqlnasalvlqseatstsaninvestqleeelsnvasflvg.liliilifitasfiavsiveEkesrik 192
                      +++++n+++ n++ +i+ +l + ++  l++++       +  s +++ e++  ++++  + ++lv+ +i+i +  ++a+ +a  +++E e++++
       CCG92756.1 120 IQTIVNGTDANTARLIEGYLLGvWIDWLKRERI---DRNLPVSLPVSQEIRVWFNPALITRNYLVPgIIVINMTVVGALLTALVVAREWERGTM 210
                      *******************99855433332221...22344555555555555*************7777777777788888899********* PP

  ABC2_membrane_3 193 elqlvsgvsplqywlskilgdflvyllqlllilll...afglgipfg.nlglllllfllfglayialgyllsslfknsetaqilifivilllsg 282
                      e +l +++++l+++++k+l +f++++  +l+ +ll   +f+  +pf  ++++l+l +++f+la++ +g l+s l+kns  a+ +++i+++l+ +
       CCG92756.1 211 EAMLATPLTKLEHFIGKLLPYFALGMGGMLFSFLLavfLFK--VPFRgSFLVLFLSSIFFLLAVLGIGVLISNLSKNSFVASMVAIITSFLPAF 302
                      **************************999999885545888..****5556677************************************9999 PP

  ABC2_membrane_3 283 ffgglfp.ledlpsalkwifsiiPffapglgllrli.tgdplweil.lsliilalfavvyllla 343
                       + g+++ ++++p +++ ++ ++P +++   l ++   g+  w++l  +l++l+lfa+v   ++
       CCG92756.1 303 MLSGFIFdINSMPVGIQFLTLLFPATYFVSILQTIFlAGN-VWSVLvGNLLVLILFAIVINGIS 365
                      98888888***************************73666.999999************87666 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8  14.6   1.5e-31   6.6e-28       4     285 ..      13     371 ..      12     372 .. 0.84

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 1.5e-31
  ABC2_membrane_2   4 akkEfrdlvrsrrfllltvllpli...................dvalaylkdlgsslqseakaikeatlaleyveaasasdeaedtdqdlkv.. 76 
                      ++kE+++++r+++  +++++lp i                   +v+ ++++ ++s+++s +++i  +  + e+                  +  
       CCG92756.1  13 IQKEWIEILRDPSSFGIAFVLPSIllflfgygisldaihlpigVVVERPTSLSSSFESSLKNSIYFSPFSYETI-----------------Qka 89 
                      68********************9988887777777666444443333333333333333333333222222222.................122 PP

  ABC2_membrane_2  77 ...........................................................................................vst 79 
                                                                                                                 v++
       CCG92756.1  90 qsdfekgrllgiiwlrgnwnreslafdkgtiqtivngtdantarliegyllgvwidwlkreridrnlpvslpvsqeirvwfnpalitrnylVPG 183
                      23334455668889******************************************************************************** PP

  ABC2_membrane_2  80 imavlipviaalfgadaiagEkergTlkllLskPvsRdeillgKfigglaigla.iavallatvllalaiilalgivlaledllllvvasvlll 172
                      i+ + ++v++al++a ++a+E+ergT++++L++P ++ e  +gK++ ++a+g+  ++ ++l +v l       ++++++++ l+l++ ++  +l
       CCG92756.1 184 IIVINMTVVGALLTALVVAREWERGTMEAMLATPLTKLEHFIGKLLPYFALGMGgMLFSFLLAVFL-------FKVPFRGSFLVLFLSSIF-FL 269
                      ***************************************************999888888888555.......899999865555555544.45 PP

  ABC2_membrane_2 173 llvvflalglllSsvarssreaaalalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdlnalgstatnll 266
                      l+v  l++g+l+S ++++s +a  +a++  ++ a++ +++ +++++++ g ++       l+ll p+ ++  +l++i+  ++++   + + nll
       CCG92756.1 270 LAV--LGIGVLISNLSKNSFVASMVAIITSFLPAFMLSGFIFDINSMPVGIQF-------LTLLFPATYFVSILQTIFLAGNVW--SVLVGNLL 352
                      534..9*******************************************9998.......************************..888999** PP

  ABC2_membrane_2 267 illlllavllvlgyvlFkr 285
                      +l+l ++v  +++y l kr
       CCG92756.1 353 VLILFAIVINGISYLLWKR 371
                      **************99998 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00027       1.2       6      41 ..      12      46 ..       7      81 .. 0.88
   2 !   64.0  23.0   2.8e-21   1.3e-17      52     209 ..     177     338 ..     139     339 .. 0.92
   3 ?   -1.5   0.6      0.31   1.4e+03      98     120 ..     348     366 ..     340     370 .. 0.42

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00027
  ABC2_membrane  6 llkreflqrwrdpslgllwrliqplllalvfgtvfg 41
                    +++e++ ++rdps++    ++ p +l+++fg+ ++
     CCG92756.1 12 FIQKEWIEILRDPSSF-GIAFVLPSILLFLFGYGIS 46
                   5899*********999.99*************9887 PP

  == domain 2  score: 64.0 bits;  conditional E-value: 2.8e-21
  ABC2_membrane  52 r....pgllffsvlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelpvsllqalifllivyflvgldls.rfflflllllltal 142
                    r    pg++++ ++ ++ ++lt++++ +e erg++e +l++pl +  + +++k+l ++++++   l  +l+++fl+ ++   +f+ ++l  ++++l
     CCG92756.1 177 RnylvPGIIVINMTVVG-ALLTALVVAREWERGTMEAMLATPL-TKLEHFIGKLLPYFALGMGGMLFSFLLAVFLFKVPFRgSFLVLFLSSIFFLL 270
                    14466************.9999999******************.*******************************999999889999********* PP

  ABC2_membrane 143 aasslgllisalapsfedasqla.slvllpllllsGffipidsmpkwlqwiaylnPltyavealrsnl 209
                    a++++g+lis l+++  +as++a    +lp ++lsGf++ i+smp+ +q++  l P ty+v++l+ ++
     CCG92756.1 271 AVLGIGVLISNLSKNSFVASMVAiITSFLPAFMLSGFIFDINSMPVGIQFLTLLFPATYFVSILQTIF 338
                    *******************99997889******************9******************9987 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.31
  ABC2_membrane  98 lakvlvelpvsllqalifllivy 120
                    +++    l+v +l+a+++  i+y
     CCG92756.1 348 VGN----LLVLILFAIVINGISY 366
                    222....3333333333333333 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.2   5.2e+03      53      69 ..      26      42 ..      13      46 .. 0.63
   2 !   19.2  14.8   2.1e-07   0.00094      57     177 ..     186     298 ..     164     299 .. 0.76
   3 ?    0.4  15.7      0.12   5.4e+02      99     175 ..     258     339 ..     254     342 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.2
  ABC2_membrane_4 53 gftlllllplilgiias 69
                     +f++ ++lp il  + +
       CCG92756.1 26 SFGIAFVLPSILLFLFG 42
                     45566666666665554 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 2.1e-07
  ABC2_membrane_4  57 llllplilgiiasylifrEeqndtlknLltiPvsrtklllaKlivllllsvllmlvtflitvlfallsgfvgfsvklvlellkkclelgllvff 150
                      ++ ++++ +++++ ++ rE + +t+  +l  P ++ + +++Kl+  + l +  ml++fl    +a+++ +v+f ++     +  +++  ++ ++
       CCG92756.1 186 VINMTVVGALLTALVVAREWERGTMEAMLATPLTKLEHFIGKLLPYFALGMGGMLFSFL----LAVFLFKVPFRGS-----FLVLFLSSIFFLL 270
                      3445555666899************************************9999998775....4556677888743.....2333445566677 PP

  ABC2_membrane_4 151 avlpi.ialvllkksyvlpliltlvyti 177
                      avl i +++++l k+++++ +++++ ++
       CCG92756.1 271 AVLGIgVLISNLSKNSFVASMVAIITSF 298
                      7888856789999998888888888776 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.12
  ABC2_membrane_4  99 livllllsvllmlvtflitvlfallsgfvgfs..vklvlellkkclelgllvffavlpi..ialvl.lkksyvlpliltlvy 175
                      ++vl+l s++++l+ + i vl++ ls  + +   v+ ++++l  +++ g +  + ++p+   +l+l +  +y+++++ t+++
       CCG92756.1 258 FLVLFLSSIFFLLAVLGIGVLISNLSKNSFVAsmVAIITSFLPAFMLSGFIFDINSMPVgiQFLTLlFPATYFVSILQTIFL 339
                      799*******************999997644311445667777888888888888999652589874777999999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       905  (0.0504769); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 2876.88
//
Query:       CCG92757.1  [L=583]
Description: putative transporter fused subunits of ABC superfamily: ATP-binding components [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-60  201.3   0.0    5.8e-29  101.4   0.0    2.7  3  ABC_tran         ABC transporter
    4.9e-24   85.7   8.6    1.5e-07   31.5   0.1    4.4  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    5.2e-06   26.1   1.8       0.08   12.7   0.0    2.4  2  AAA_29           P-loop containing region of AAA domain
    6.4e-06   26.1   0.2        3.5    7.2   0.0    4.4  5  AAA_15           AAA ATPase domain
    5.5e-05   23.8  12.5    0.00051   20.6   1.0    3.1  3  AAA_23           AAA domain
    8.5e-05   22.7   0.1        1.1    9.5   0.0    3.2  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
    0.00015   22.0   0.1       0.14   12.4   0.0    3.0  2  AAA_22           AAA domain
    0.00016   21.2   1.9        2.6    7.4   0.1    3.8  4  SMC_N            RecF/RecN/SMC N terminal domain
    0.00022   21.7   0.1        1.1    9.6   0.0    2.6  2  AAA_16           AAA ATPase domain
    0.00035   20.5   0.1       0.36   10.7   0.0    2.7  2  Rad17            Rad17 P-loop domain
     0.0004   20.4   0.2        1.6    8.8   0.0    2.9  2  MMR_HSR1         50S ribosome-binding GTPase
    0.00099   18.9   0.0       0.15   11.8   0.0    2.2  2  AAA_30           AAA domain
     0.0011   18.6   0.1      0.024   14.2   0.0    2.3  2  AAA_27           AAA domain
     0.0016   18.4   0.2        1.9    8.4   0.1    2.3  2  RsgA_GTPase      RsgA GTPase
     0.0032   18.0   0.0       0.51   10.9   0.0    2.8  2  AAA_18           AAA domain
      0.009   15.4   0.1        1.7    8.0   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.011   16.0   0.4        2.2    8.5   0.1    2.5  2  AAA_33           AAA domain
      0.013   14.5   0.5        1.4    7.8   0.1    2.2  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.013   15.9   0.1        7.2    7.0   0.0    3.4  2  AAA              ATPase family associated with various cellul
      0.028   14.5   0.4        1.7    8.7   0.0    2.4  2  DUF87            Helicase HerA, central domain
      0.031   13.1   0.3        1.4    7.6   0.1    2.2  2  Adeno_IVa2       Adenovirus IVa2 protein
      0.034   13.9   0.0        6.9    6.4   0.0    2.4  2  CLP1_P           mRNA cleavage and polyadenylation factor CLP
      0.036   14.1   0.2        2.8    7.9   0.0    2.6  2  AAA_5            AAA domain (dynein-related subfamily)
      0.038   13.8   0.2        2.2    8.0   0.0    2.6  2  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.052   13.4   0.1        4.2    7.3   0.0    2.5  2  NTPase_1         NTPase
      0.077   12.7   0.0         16    5.1   0.0    2.7  2  Thymidylate_kin  Thymidylate kinase
       0.11   12.9   0.1         25    5.3   0.0    2.7  2  RNA_helicase     RNA helicase
       0.13   12.5   0.4        8.3    6.6   0.0    2.5  2  AAA_28           AAA domain
       0.17   11.4   0.7        2.3    7.8   0.1    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.19   11.4   0.4         22    4.7   0.0    2.3  2  AAA_24           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.0   9.7e-32   5.8e-29       2     136 ..      28     170 ..      27     171 .. 0.94
   2 ?   -1.9   0.0       7.1   4.3e+03      36      80 ..     244     311 ..     236     344 .. 0.56
   3 !   97.0   0.0   2.1e-30   1.3e-27       2     137 .]     354     497 ..     353     497 .. 0.96

  Alignments for each domain:
  == domain 1  score: 101.4 bits;  conditional E-value: 9.7e-32
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 k++s ++  g ++++vG+ G+GKStLl+ll+g++ p++G+i++    ++++  +e l++++g++pq+  l ++ltv+en             e+++++ 
  CCG92757.1  28 KELSSTIGYGIITGVVGPDGSGKSTLLRLLSGMYVPDSGQIEVLgLSPIEH--KEALSAQLGYMPQNFGLYEDLTVEENlrlhadlyclpknEREKRFR 124
                 789999***********************************9994566666..9***********************************9988888999 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++l+  gl+++ ++ +     sLSgG+kq++al  +ll+ pkllllDEpt
  CCG92757.1 125 ELLAMSGLSQFMKRLA----GSLSGGMKQKLALSSVLLSSPKLLLLDEPT 170
                 9999999999999999....*****************************9 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 7.1
                 --SEEEEEET.TCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........................H CS
                 xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................x RF
    ABC_tran  36 kpteGeilld.gkdlkeqeleslrkeigvlpqepqlfpeltvren........................e 80 
                 k ++ e+ll+ + d + +++++  k i++l q+++ +  l  +en                        +
  CCG92757.1 244 KMDSKELLLNvSSDPSVIDHSFEGKYIRILLQKDKKDTFL--KENekfgivaipgerkiadcvlsfypqK 311
                 4455555555555555577888888888888885444444..4444466677766666666666655431 PP

  == domain 3  score: 97.0 bits;  conditional E-value: 2.1e-30
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 k++s++++ ge+ +i+G+nGaGKSt +++l+gll p eG++ + g dl++ +  s+r++ig+++q+ +l  +l+v++n             +++++i+ 
  CCG92757.1 354 KKISFSVNLGEIFGILGPNGAGKSTTFRMLCGLLPPSEGKVSVSGFDLRT-SPASARSRIGYVSQKFSLYTNLSVYQNllffsraydlsgeKQKRRIAS 451
                 89***********************************************9.8999***********************************999999*** PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++++++l  + d  +      +  G ++r+a+a+a l +p++l+lDEpt+
  CCG92757.1 452 VIEEYELGSVLDMDA----GRIPLGFQKRLAIACATLHDPDILFLDEPTS 497
                 ******999777777....*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.3e-05     0.014       1      22 [.      39      60 ..      39      77 .. 0.88
   2 !   30.1   0.1   7.1e-10   4.2e-07     234     296 ..     140     200 ..      88     200 .. 0.90
   3 !   11.3   0.1   0.00037      0.22       2      22 ..     366     386 ..     365     433 .. 0.77
   4 !   31.5   0.1   2.6e-10   1.5e-07     235     298 ..     467     527 ..     426     530 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.3e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                +++++Gp gsGKS+LL++l+++
  CCG92757.1 39 ITGVVGPDGSGKSTLLRLLSGM 60
                799****************998 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 7.1e-10
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltT 296
                 a +lS G+k+ lal + ll+ +   +lll+DEp  g +P   r+l+++l ++ +++g  v+++T
  CCG92757.1 140 AGSLSGGMKQKLALSSVLLSSP---KLLLLDEPTVGVDPLSRRELWKILfDLVKDRGLSVLIST 200
                 6789****************99...9********************888788888999999998 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00037
      AAA_21   2 nvliGpNgsGKSnLLdaldll 22 
                  ++ GpNg+GKS+ ++ l +l
  CCG92757.1 366 FGILGPNGAGKSTTFRMLCGL 386
                 689**********99988555 PP

  == domain 4  score: 31.5 bits;  conditional E-value: 2.6e-10
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                   ++ G+++ la++ a l ++   ++l++DEp +g++P+  r+++  + +lsr+ + +++tTH 
  CCG92757.1 467 GRIPLGFQKRLAIACATLHDP---DILFLDEPTSGMDPQSRREFWIRMIRLSRRHTTLLITTHY 527
                 555666666655555555555...*********************666666677*********6 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.4   0.00019      0.11      24      39 ..      39      54 ..      28      68 .. 0.82
   2 !   12.7   0.0   0.00013      0.08      14      39 ..     352     380 ..     347     395 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00019
      AAA_29 24 atlltGpsGsGKSTll 39
                +t ++Gp GsGKSTll
  CCG92757.1 39 ITGVVGPDGSGKSTLL 54
                67799**********8 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00013
      AAA_29  14 g.htieidlkg..atlltGpsGsGKSTll 39 
                   ++i+++++   ++ + Gp+G+GKST +
  CCG92757.1 352 AvKKISFSVNLgeIFGILGPNGAGKSTTF 380
                 5555555544334999***********77 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0059       3.5      25      44 ..      39      58 ..      26      81 .. 0.86
   2 ?   -0.7   0.0       1.5   8.8e+02     323     363 ..     160     200 ..     153     200 .. 0.91
   3 ?   -1.7   0.5       2.9   1.8e+03      83     111 ..     298     343 ..     238     361 .. 0.44
   4 ?    6.0   0.1     0.014       8.3      17      43 ..     358     383 ..     347     403 .. 0.82
   5 ?    6.3   0.0     0.011       6.8     323     364 ..     486     526 ..     471     527 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0059
      AAA_15 25 ltvliGkNnsGKSsileald 44
                +t ++G+ +sGKS++l++l 
  CCG92757.1 39 ITGVVGPDGSGKSTLLRLLS 58
                7889*************996 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.5
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitT 363
                 ++++ll++EP +   p   ++l+k l +l++d    v+i+T
  CCG92757.1 160 SPKLLLLDEPTVGVDPLSRRELWKILFDLVKDRGLSVLIST 200
                 578999*************************9988888887 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.9
      AAA_15  83 f.............aek.....ekakeyektlkskekkkadlllkkk 111
                               + +     +k+++ +k+++++++ ++ + ++k+
  CCG92757.1 298 RkiadcvlsfypqkQ-QpalssSKEEVALKEKRKERSLEKIIVVEKL 343
                 022223233344330.1222223333333333333333333333343 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.014
      AAA_15  17 veidlseeltvliGkNnsGKSsileal 43 
                 ++++l e +  + G+N++GKS+  ++l
  CCG92757.1 358 FSVNLGE-IFGILGPNGAGKSTTFRML 383
                 6788888.999***********99888 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.011
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 +++il+++EP     pq  ++++  +++l++ +   ++itTH
  CCG92757.1 486 DPDILFLDEPTSGMDPQSRREFWIRMIRLSRRHT-TLLITTH 526
                 789******************************7.9****** PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.3     0.002       1.2      21      39 ..      39      57 ..      29      60 .. 0.90
   2 ?   -0.7   0.6       2.9   1.7e+03      93     152 ..     273     331 ..     233     346 .. 0.51
   3 !   20.6   1.0   8.6e-07   0.00051       7      41 ..     347     385 ..     342     387 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.002
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                +t ++Gp G+GK+T+l+ +
  CCG92757.1 39 ITGVVGPDGSGKSTLLRLL 57
                7889***********9866 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.9
      AAA_23  93 erelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefelkdkk 152
                   ++ kk++  + ++k+ ++ i    ++i + + s++++ ++ ++  ++++  +++k+k+
  CCG92757.1 273 LLQKDKKDTFLKENEKFGIVAIPGE-RKIADCVLSFYPQKQQPALSSSKEEVALKEKRKE 331
                 3444444444444444445555443.2333344445554444444444443222222222 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 8.6e-07
      AAA_23   7 frsfrdqe.idF...skgltlItGpNGaGKTTildAikl 41 
                 f++f+ ++ i F      ++ I GpNGaGK+T ++ ++ 
  CCG92757.1 347 FGKFEAVKkISFsvnLGEIFGILGPNGAGKSTTFRMLCG 385
                 788977555999554446****************99986 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0041       2.5      26      88 ..     136     185 ..     125     187 .. 0.75
   2 !    9.5   0.0    0.0019       1.1      61      83 ..     484     506 ..     471     511 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0041
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                 ++r +g+lSGG kq+la       l++++ s      +++l++LDE   ++D+ s+++l ++l
  CCG92757.1 136 MKRLAGSLSGGMKQKLA-------LSSVLLS------SPKLLLLDEPTVGVDPLSRRELWKIL 185
                 56777888888887654.......4444444......58999999999999999999888765 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0019
     SbcCD_C  61 epalrlvfLDEAFsklDeesiat 83 
                  ++++++fLDE  s++D++s+++
  CCG92757.1 484 LHDPDILFLDEPTSGMDPQSRRE 506
                 56899**************9986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00023      0.14       9      49 ..      41      88 ..      35     206 .. 0.62
   2 ?    6.3   0.0     0.018        11      10      28 ..     368     386 ..     363     454 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00023
      AAA_22  9 vvtGesGtGKTtllrrlleqldeeakaee.......erpevvfvtlps 49
                 v+G+ G+GK+tllr l   ++ ++ + e       e++e ++ +l  
  CCG92757.1 41 GVVGPDGSGKSTLLRLLSGMYVPDSGQIEvlglspiEHKEALSAQLGY 88
                599**************9998776666667777777444444444444 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.018
      AAA_22  10 vtGesGtGKTtllrrlleq 28 
                 + G+ G+GK+t+ r+l   
  CCG92757.1 368 ILGPNGAGKSTTFRMLCGL 386
                 78***********998655 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0044       2.6      26      41 ..      39      54 ..      23      60 .. 0.87
   2 ?   -1.6   0.0       2.5   1.5e+03     119     150 ..     119     156 ..      98     192 .. 0.71
   3 !    6.4   0.1    0.0089       5.3      26      41 ..     365     380 ..     345     393 .. 0.79
   4 ?    3.8   0.0     0.057        34     152     212 ..     480     541 ..     475     545 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0044
                EEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnll 41
                +t +vGp GSGKs ll
  CCG92757.1 39 ITGVVGPDGSGKSTLL 54
                689**********987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.5
                 -HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxx RF
       SMC_N 119 tkkevsellesagiske......lLSgGektLvalaLl 150
                 ++k  +ell+++g+s+       +LSgG k+ +al+ +
  CCG92757.1 119 REKRFRELLAMSGLSQFmkrlagSLSGGMKQKLALSSV 156
                 55566666666666655555555899999987777644 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0089
                 EEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnll 41 
                 +  i+GpNG+GKs  +
  CCG92757.1 365 IFGILGPNGAGKSTTF 380
                 55799********866 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.057
                 HHHCCS--SEEEECTTTTTS-HHHHHHH.HHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 152 AiqkvkpaplyllDeidaaLDeknvkkv.aellkeksknaQfivislreemlekadklvgvt 212
                 A    +   + +lDe  + +D + ++++  ++++ ++ ++ ++++++  e  e +d+lv ++
  CCG92757.1 480 ACATLHDPDILFLDEPTSGMDPQSRREFwIRMIRLSRRHTTLLITTHYLEEAEYCDRLVIIS 541
                 5555555567889********9887765379*****************99999999998776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1    0.0022       1.3      29      45 ..      42      58 ..      27      87 .. 0.88
   2 !    9.6   0.0    0.0019       1.1      25     143 ..     364     494 ..     345     524 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0022
      AAA_16 29 lsGesGvGKsslvrell 45
                ++G+ G+GKs+l+r l 
  CCG92757.1 42 VVGPDGSGKSTLLRLLS 58
                89***********9885 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0019
      AAA_16  25 elvllsGesGvGKsslvrellralekd....................ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawreklee 103
                 e+  + G+ G GKs+  r+l   l  +                    ++ ++++k+  +   + +s++ ++l + +   +l  e+++   ++ +  +ee
  CCG92757.1 364 EIFGILGPNGAGKSTTFRMLCGLLPPSegkvsvsgfdlrtspasarsRIGYVSQKFSLY---TNLSVYQNLL-FFSRAYDLSGEKQK---RRIASVIEE 455
                 566689***************98888866677666666666666665566666666666...5666666666.44777777777333...333333333 PP

      AAA_16 104 alaavpelagaeasrllellkrll.allsrderplvlvlDd 143
                  ++  +++ + +a r+   +++ l   +++ ++p +l+lD+
  CCG92757.1 456 -YE-LGSVLDMDAGRIPLGFQKRLaIACATLHDPDILFLDE 494
                 .33.4566677777888888888877888888888888885 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.011       6.6      50      72 ..      42      64 ..      27      80 .. 0.88
   2 !   10.7   0.0    0.0006      0.36      47     126 ..     365     442 ..     348     469 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.011
       Rad17 50 isGPsGCgkstvvkvLskelgik 72
                + GP G gkst ++ Ls  ++++
  CCG92757.1 42 VVGPDGSGKSTLLRLLSGMYVPD 64
                68***************988875 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0006
       Rad17  47 iLLisGPsGCgkstvvkvLskelgiklre.wlnpvslkepdnqksdfkgltekesrflsqiesfkeleLkdakylklqklG 126
                 i  i GP G gkst+ ++L   l ++  +  + +  l+ ++       g + ++ ++ + + ++++l+   ++   l+  G
  CCG92757.1 365 IFGILGPNGAGKSTTFRMLCGLLPPSEGKvSVSGFDLRTSPASARSRIGYVSQKFSLYTNLSVYQNLL-FFSRAYDLS--G 442
                 77799****************99998755167899999999877777777777767899999999994.444444565..4 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0035       2.1       3      22 ..      41      60 ..      39      80 .. 0.85
   2 !    8.8   0.0    0.0027       1.6       3      22 ..     367     390 ..     365     414 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0035
                EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge 22
                ++vG   +GKStL++ l+g 
  CCG92757.1 41 GVVGPDGSGKSTLLRLLSGM 60
                79*************99884 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0027
                 EEEESTTSSHHHHHHHHHT....S CS
    MMR_HSR1   3 aivGrpNvGKStLinaltg....e 22 
                 +i+G   +GKSt ++ l+g    +
  CCG92757.1 367 GILGPNGAGKSTTFRMLCGllppS 390
                 89****************855542 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00025      0.15      20      56 ..      39      77 ..      28     168 .. 0.84
   2 ?    4.9   0.0     0.031        19      21      43 ..     366     388 ..     352     408 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
      AAA_30 20 vavltGpAGtGKttalkalreaweaa.g.grviglAptg 56
                ++ ++Gp G+GK+t+l+ l  ++  + g  +v+gl+p +
  CCG92757.1 39 ITGVVGPDGSGKSTLLRLLSGMYVPDsGqIEVLGLSPIE 77
                67799**************99998774446777777754 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.031
      AAA_30  21 avltGpAGtGKttalkalreawe 43 
                   + Gp G+GK+t+ + l  ++ 
  CCG92757.1 366 FGILGPNGAGKSTTFRMLCGLLP 388
                 5689**********998866655 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.26   1.6e+02      31      46 ..      42      57 ..      37      61 .. 0.86
   2 !   14.2   0.0   4.1e-05     0.024      11      49 ..     347     386 ..     340     388 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.26
      AAA_27 31 iyGpNEAGKstalrAi 46
                ++Gp  +GKst+lr +
  CCG92757.1 42 VVGPDGSGKSTLLRLL 57
                89**********9865 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 4.1e-05
      AAA_27  11 yGkftd.rsldfsaeeadlhliyGpNEAGKstalrAisdl 49 
                 +Gkf+  ++++fs +  ++  i+GpN AGKst++r +  l
  CCG92757.1 347 FGKFEAvKKISFSVNLGEIFGILGPNGAGKSTTFRMLCGL 386
                 799987369*****999999*************9987666 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0032       1.9      90     122 ..      27      60 ..      12      71 .. 0.78
   2 !    7.7   0.0    0.0052       3.1      85     124 ..     348     388 ..     297     414 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0032
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpe 122
                  ++el++ +    ++ +vG+ G GKStL+  l + 
   CCG92757.1  27 IKELSSTIGYgIITGVVGPDGSGKSTLLRLLSGM 60 
                  5566666655467789************999875 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0052
                  TTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  85 ktkegleelkellkd.ktsvlvGqSGvGKStLinallpele 124
                   + e++++++  ++  ++  ++G+ G+GKSt   +l + l 
   CCG92757.1 348 GKFEAVKKISFSVNLgEIFGILGPNGAGKSTTFRMLCGLLP 388
                  34478888888888669999***********9999887654 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00085      0.51       3      21 ..      42      60 ..      41     130 .. 0.89
   2 ?    3.9   0.0      0.12        73       3      18 ..     368     383 ..     367     421 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00085
      AAA_18  3 ltGtpGvGKttlakeLskr 21
                + G+ G+GK+tl + Ls +
  CCG92757.1 42 VVGPDGSGKSTLLRLLSGM 60
                89**************865 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.12
      AAA_18   3 ltGtpGvGKttlakeL 18 
                 + G+ G+GK+t  + L
  CCG92757.1 368 ILGPNGAGKSTTFRML 383
                 89*********98876 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.028        17      27      57 ..      42      73 ..      32      90 .. 0.79
   2 !    8.0   0.0    0.0028       1.7      26      51 ..     367     392 ..     343     404 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.028
  Mg_chelatase 27 lvGppGsGKtmlakrlpsl.lpplseeealev 57
                  +vGp GsGK+ l + l+++ +p+  + e+l  
    CCG92757.1 42 VVGPDGSGKSTLLRLLSGMyVPDSGQIEVLGL 73
                  58**************9983456666666655 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0028
  Mg_chelatase  26 llvGppGsGKtmlakrlpsllpplse 51 
                    ++Gp G+GK+   + l +llpp + 
    CCG92757.1 367 GILGPNGAGKSTTFRMLCGLLPPSEG 392
                   579*******************9875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0036       2.2       4      19 ..      42      57 ..      39      65 .. 0.88
   2 ?    5.1   0.0      0.04        24       5      21 ..     369     385 ..     366     411 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0036
      AAA_33  4 lvGlpGsGKstlaerl 19
                +vG+ GsGKstl++ l
  CCG92757.1 42 VVGPDGSGKSTLLRLL 57
                79**********9865 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.04
      AAA_33   5 vGlpGsGKstlaerllk 21 
                  G++G+GKst  + l+ 
  CCG92757.1 369 LGPNGAGKSTTFRMLCG 385
                 69********9998875 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0024       1.4      19      67 ..      27      75 ..      15      81 .. 0.85
   2 ?    4.6   0.1     0.022        13      30      66 ..     364     400 ..     348     421 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0024
                HHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE-- CS
        MeaB 19 lerllakaGraqvvGltGvPGaGkstlvealglelrrrGkrvavlavDP 67
                +++l+++ G     G+ G  G+Gkstl+  l   ++    ++ vl + P
  CCG92757.1 27 IKELSSTIGYGIITGVVGPDGSGKSTLLRLLSGMYVPDSGQIEVLGLSP 75
                5678899999999***************999888777777777777666 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.022
                 EEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE- CS
        MeaB  30 qvvGltGvPGaGkstlvealglelrrrGkrvavlavD 66 
                 +  G+ G  GaGkst+   l   l     +v+v   D
  CCG92757.1 364 EIFGILGPNGAGKSTTFRMLCGLLPPSEGKVSVSGFD 400
                 5789*************99999998888888887666 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.081        48       3      21 ..      42      60 ..      41      95 .. 0.84
   2 ?    7.0   0.0     0.012       7.2       4      38 ..     369     411 ..     367     507 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.081
                EESSTTSSHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavake 21
                ++Gp G GK++l + +   
  CCG92757.1 42 VVGPDGSGKSTLLRLLSGM 60
                68***********998765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.012
                 ESSTTSSHHHHHHHHHHHH..THEEEEEETTTCSSS......S CS
         AAA   4 yGppGtGKTllakavakel..gvefleisgsellsk......y 38 
                  Gp G GK+++ + ++  l  +   +++sg +l+ +       
  CCG92757.1 369 LGPNGAGKSTTFRMLCGLLppSEGKVSVSGFDLRTSpasarsR 411
                 7***************998543445777777777333444440 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.11        68      27      43 ..      41      57 ..      40      68 .. 0.86
   2 ?    8.7   0.0    0.0029       1.7      26      44 ..     366     384 ..     346     393 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.11
       DUF87 27 AilgsTGsGKSntvavL 43
                +++g  GsGKS++ ++L
  CCG92757.1 41 GVVGPDGSGKSTLLRLL 57
                788999********998 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0029
       DUF87  26 lAilgsTGsGKSntvavLl 44 
                 ++ilg  G+GKS+t + L+
  CCG92757.1 366 FGILGPNGAGKSTTFRMLC 384
                 9***************997 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0024       1.4      88     107 ..      38      57 ..       7      76 .. 0.72
   2 ?    3.2   0.0      0.05        30      81     108 ..     358     384 ..     306     395 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0024
  Adeno_IVa2  88 viGviyGPtGsGksqllrnl 107
                 +i  + GP GsGks llr l
  CCG92757.1  38 IITGVVGPDGSGKSTLLRLL 57 
                 3444569***********65 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.05
  Adeno_IVa2  81 lnyglqPviGviyGPtGsGksqllrnli 108
                 + ++l  + G+  GP G+Gks  +r l 
  CCG92757.1 358 FSVNLGEIFGI-LGPNGAGKSTTFRMLC 384
                 44555567775.6**********99884 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.012       6.9       1      19 [.      44      62 ..      44      81 .. 0.84
   2 ?    5.1   0.0      0.03        18       1      34 [.     370     403 ..     370     427 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.012
      CLP1_P  1 GpkdsGKSTlarlLlNyal 19
                Gp  sGKSTl rlL  + +
  CCG92757.1 44 GPDGSGKSTLLRLLSGMYV 62
                899***********98776 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.03
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvGq 34 
                 Gp+ +GKST  r+L+  +  ++ k+ +   D+  
  CCG92757.1 370 GPNGAGKSTTFRMLCGLLPPSEGKVSVSGFDLRT 403
                 899************9988777777777666665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0047       2.8       5      24 ..      43      63 ..      41      75 .. 0.83
   2 ?    3.3   0.0      0.13        76       4      23 ..     368     387 ..     366     405 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0047
                E--SSSSHHHHHHHGGGGB.S CS
       AAA_5  5 vGppGtgKselaerlaaal.n 24
                vGp G+gKs+l + l+ ++  
  CCG92757.1 43 VGPDGSGKSTLLRLLSGMYvP 63
                8**************998864 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.13
                 EE--SSSSHHHHHHHGGGGB CS
       AAA_5   4 LvGppGtgKselaerlaaal 23 
                 ++Gp G gKs+  + l+ +l
  CCG92757.1 368 ILGPNGAGKSTTFRMLCGLL 387
                 68************999998 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0037       2.2       1      21 [.      42      62 ..      42      79 .. 0.78
   2 ?    2.9   0.1      0.13        78       1      21 [.     368     388 ..     368     400 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0037
  ATP_bind_1  1 vvGpaGsGKttfvgalseile 21
                vvGp GsGK+t+ + ls ++ 
  CCG92757.1 42 VVGPDGSGKSTLLRLLSGMYV 62
                89***********99987655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.13
  ATP_bind_1   1 vvGpaGsGKttfvgalseile 21 
                 ++Gp G+GK+t  + l  +l+
  CCG92757.1 368 ILGPNGAGKSTTFRMLCGLLP 388
                 68*********9887766655 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.11        63       4      21 ..      42      59 ..      38      81 .. 0.79
   2 ?    7.3   0.0     0.007       4.2       4      47 ..     368     414 ..     365     420 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.11
                EE--TTSSHHHHHHHHHH CS
    NTPase_1  4 iTGppGvGKtTlvkkvle 21
                + Gp G+GK+Tl++ ++ 
  CCG92757.1 42 VVGPDGSGKSTLLRLLSG 59
                5699********987765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.007
                 EE--TTSSHHHHHHHHHHHH.....GGGEEEEEEEEE-.------EE CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellkss..gvkvgGfyteevr.eggrrigF 47 
                 i Gp G GK+T ++ ++ ll  s   v+v+Gf  +    +  +rig+
  CCG92757.1 368 ILGPNGAGKSTTFRMLCGLLPPSegKVSVSGFDLRTSPaSARSRIGY 414
                 77******************655337999999887776566667776 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.027        16       3      17 ..      44      58 ..      42      69 .. 0.88
   2 ?    4.8   0.0     0.034        20       3      26 ..     370     393 ..     368     544 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.027
                     ESTTSSHHHHHHHHH CS
  Thymidylate_kin  3 GlDGaGKttqaellk 17
                     G DG+GK+t ++ll 
       CCG92757.1 44 GPDGSGKSTLLRLLS 58
                     99*********9996 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.034
                      ESTTSSHHHHHHHHHHHHHHTTE. CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegik 26 
                      G +GaGK+t  ++l   l+ +  k
       CCG92757.1 370 GPNGAGKSTTFRMLCGLLPPSEGK 393
                      899**********99988876655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.041        25       3      19 ..      42      58 ..      41     100 .. 0.87
   2 ?    4.8   0.0     0.061        36       3      19 ..     368     384 ..     366     424 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.041
  RNA_helicase  3 lyGpsgeGKStlakeLa 19
                  ++Gp g GKStl + L+
    CCG92757.1 42 VVGPDGSGKSTLLRLLS 58
                  68**********99875 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.061
  RNA_helicase   3 lyGpsgeGKStlakeLa 19 
                   + Gp+g GKSt+ + L+
    CCG92757.1 368 ILGPNGAGKSTTFRMLC 384
                   68**********99987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.014       8.3       4      21 ..      42      59 ..      41      71 .. 0.85
   2 ?    3.1   0.2      0.17     1e+02       4      19 ..     368     383 ..     366     387 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
      AAA_28  4 itGgestGKTtlleaLaa 21
                ++G+ ++GK+tll+ L+ 
  CCG92757.1 42 VVGPDGSGKSTLLRLLSG 59
                58************9985 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.17
      AAA_28   4 itGgestGKTtlleaL 19 
                 i+G+ ++GK+t+ + L
  CCG92757.1 368 ILGPNGAGKSTTFRML 383
                 89**********9877 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0039       2.3       2      19 ..      39      56 ..      38      70 .. 0.88
   2 ?    1.6   0.1      0.31   1.9e+02       3      21 ..     366     384 ..     364     396 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0039
                EEEEEESTTCCHHHHHHH CS
        cobW  2 vtvltGflGsGKTtLlnh 19
                +t+++G+ GsGK+tLl+ 
  CCG92757.1 39 ITGVVGPDGSGKSTLLRL 56
                6899************85 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.31
                 EEEEESTTCCHHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhll 21 
                 +++ G+ G+GK+t  + l+
  CCG92757.1 366 FGILGPNGAGKSTTFRMLC 384
                 6789*********888776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.041        25       6      22 ..      41      57 ..      37      64 .. 0.85
   2 ?    4.7   0.0     0.036        22       6      22 ..     367     383 ..     363     401 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.041
      AAA_24  6 liyGpsgiGKTtlakel 22
                 ++Gp g+GK+tl++ l
  CCG92757.1 41 GVVGPDGSGKSTLLRLL 57
                589**********9866 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.036
      AAA_24   6 liyGpsgiGKTtlakel 22 
                  i Gp+g+GK+t+ ++l
  CCG92757.1 367 GILGPNGAGKSTTFRML 383
                 699*********99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 4038.59
//
Query:       CCG92758.1  [L=292]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-24   86.9   0.1    2.3e-24   85.8   0.1    1.6  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    6.1e-17   62.3   0.0    3.1e-13   50.3   0.0    2.4  2  HlyD_3           HlyD family secretion protein
      1e-11   44.5   1.6    1.7e-11   43.8   0.1    2.2  2  Biotin_lipoyl_2  Biotin-lipoyl like
     0.0001   22.1   0.0    0.00012   21.9   0.0    1.3  1  HlyD             HlyD membrane-fusion protein of T1SS
    0.00023   20.9   0.0      0.071   12.9   0.0    2.4  2  Biotin_lipoyl    Biotin-requiring enzyme
    0.00067   19.4   0.0     0.0062   16.3   0.0    2.2  2  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
  ------ inclusion threshold ------
       0.96    9.2  11.8        1.6    8.5  11.8    1.3  1  OEP              Outer membrane efflux protein


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.1   8.8e-28   2.3e-24       4     213 ..      35     271 ..      32     272 .. 0.76

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 8.8e-28
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXX...........XXXXXXXX............. CS
    HlyD_D23   4 ktlravGtvayderrlarvsarveGwveklyvnatgdkVkkGqpLaelyspelvaa..qeeyllalk...........akkklkkke............ 77 
                  tl++ G+v++ e +la      +G++ k+yv+ +g++VkkG+ Lael+   + +a  q+e   a +           +       +            
  CCG92758.1  35 GTLTIYGNVDIREVQLAF---YDTGRILKMYVQ-EGQRVKKGELLAELDPVRFEDAvrQAEHTVAVDkaalenaeityK-------Rdealakeqyisl 122
                 577788888887766654...458*********.**************9999987744777777777555555555541.......0555555668855 PP

                 ........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  78 ........lleaarerLrllgvseeqiaelektgkvqktvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevt 168
                          l++a+++L++ +      a+l+  ++  +  +++ap++Gv+ ++ +  G++v+p++++ft+a    VWv a v+e+ l++v  g+k+e+ 
  CCG92758.1 123 qerdnalaALKEAKDKLKADE------AALSLAKRELQDAKLYAPQDGVIEDRILEPGDMVTPQTPVFTMALDRPVWVRAYVPEAYLGKVFLGMKAEIL 215
                 534443334444444443322......4566667777889*********************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXX........XXXXX...XXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 169 vealpgktfeGkvdyiyptvd........petRt...vkvRieldNpdgkLkpgmf 213
                 ++++pg+ f+G + +i+p+ +        pe Rt    +vR+  +N+d +L+ gm 
  CCG92758.1 216 TDSYPGRVFHGWIGFISPVSEftpknvetPELRTklvYQVRVYSENADYRLRLGMP 271
                 ******************86433222223555774445899999********9996 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00051       1.3       7      48 ..      55     100 ..      54     122 .. 0.79
   2 !   50.3   0.0   1.2e-16   3.1e-13       2      88 ..     158     245 ..     157     281 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00051
      HlyD_3   7 dGvvvelnveegevvqagdelleiip...pdtll.veakvpaadlg 48 
                 +G++ ++ v+eg+ v +g+ l+e+ p   +d +  +e +v+ + ++
  CCG92758.1  55 TGRILKMYVQEGQRVKKGELLAELDPvrfEDAVRqAEHTVAVDKAA 100
                 599*********************9988744444477777666665 PP

  == domain 2  score: 50.3 bits;  conditional E-value: 1.2e-16
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisp..tvdaktgayk 88 
                 l+Ap dGv+ +  +e+g++v++++++++ + ++ ++v+a+vp+a+lg++   g+k+++  d++++++  g i  isp  ++++k+   +
  CCG92758.1 158 LYAPQDGVIEDRILEPGDMVTPQTPVFTMALDRPVWVRAYVPEAYLGKVF-LGMKAEILTDSYPGRVFHGWIGFISPvsEFTPKNVETP 245
                 89***********************************************5.**************************665566655322 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1   6.5e-15   1.7e-11      10      49 ..      55      94 ..      46      95 .. 0.91
   2 ?   -3.0   0.3       2.7   6.8e+03      38      49 ..     127     139 ..     121     140 .. 0.61

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 6.5e-15
  Biotin_lipoyl_2 10 sGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaql 49
                      Gr+ + +V++GqrVk+G +LaelD+ ++++a++qae ++
       CCG92758.1 55 TGRILKMYVQEGQRVKKGELLAELDPVRFEDAVRQAEHTV 94
                     59**********************************9876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.7
  Biotin_lipoyl_2  38 lq.lalaqaeaql 49 
                       + +al+ a+ +l
       CCG92758.1 127 NAlAALKEAKDKL 139
                      4446777777666 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.8e-08   0.00012      12      78 ..     191     276 ..      11     278 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.8e-08
                 E........EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSB..............EEEEEEEEEEEETTEEEESSSS-TTEEE CS
                 x........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  12 a........etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispd..............rvpvrvvvekaqgpyyplriglkagalv 78 
                          e  l++v  g+++e+ +d +p++++++  g++ ++s +              + +vrv+ e a++    lr g++a++++
  CCG92758.1 191 PvwvrayvpEAYLGKVFLGMKAEILTDSYPGRVFHGWIGFISPVSEFtpknvetpelrtklVYQVRVYSENADYR---LRLGMPATVRI 276
                 05555557788899999****************************************************999988...88899998876 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.8e-05     0.071      11      36 ..      52      78 ..      48      81 .. 0.82
   2 !    5.5   0.0    0.0057        15      44      72 ..     157     185 ..     129     186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.8e-05
                   EEEE..ECSESSSTTCEE-TTSEEEEE CS
  Biotin_lipoyl 11 sveeg.vvevlvkvGdkVkagqvlaev 36
                   ++ +g +++++v++G+ Vk+g+ lae+
     CCG92758.1 52 FYDTGrILKMYVQEGQRVKKGELLAEL 78
                   566778888999999999999999987 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0057
                    EEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtvevgdllak 72 
                    ++ ap++Gv+++   + Gd+v+  +++++
     CCG92758.1 157 KLYAPQDGVIEDRILEPGDMVTPQTPVFT 185
                    6789******9866666*****9999987 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.4e-06    0.0062      77     122 ..      48      97 ..      31     101 .. 0.82
   2 ?    0.6   0.0      0.17   4.3e+02      34      49 ..     152     167 ..     128     186 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.4e-06
                 TTT....TTTTEEES----SEE-SEEEEEEE-HHHHGGGSS---EEEEES CS
  PTS_EIIA_1  77 vkl....kgegFellvkegdkVkagdklvevdleaikkagystttpvvvt 122
                 v+l     g+  +++v+eg++Vk+g++l+e+d+   ++a  +   +v v 
  CCG92758.1  48 VQLafydTGRILKMYVQEGQRVKKGELLAELDPVRFEDAVRQAEHTVAVD 97 
                 555555578899*********************99999988887777765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.17
                 EE-SSEEEES--EEEE CS
  PTS_EIIA_1  34 epsegkvvapvdGkve 49 
                 e ++ k++ap dG +e
  CCG92758.1 152 ELQDAKLYAPQDGVIE 167
                 5567899999999997 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  11.8   0.00063       1.6     117     184 ..      87     154 ..      84     157 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00063
         OEP 117 lllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLe 184
                 +++a+ ++++ ++al++ae ++++ ea++k   isl + ++a + l +a+ +l + e++l la+ +L+
  CCG92758.1  87 VRQAEHTVAVDKAALENAEITYKRDEALAKEQYISLQERDNALAALKEAKDKLKADEAALSLAKRELQ 154
                 6889999*****************************88*************************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 1854.94
//
Query:       CCG92759.1  [L=449]
Description: Outer membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-51  172.9  24.6    3.7e-26   92.1   7.4    2.1  2  OEP       Outer membrane efflux protein
  ------ inclusion threshold ------
       0.11   12.2   0.1        2.1    8.0   0.0    2.3  2  INSIG     Insulin-induced protein (INSIG)


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   7.4   4.1e-30   3.7e-26       3     187 ..      42     228 ..      40     229 .. 0.95
   2 !   87.0   9.2   1.5e-28   1.4e-24       4     188 .]     254     433 ..     251     433 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 4.1e-30
         OEP   3 ellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgtt...svgltlsqplfdggkrrarvkaakaqleaaeaq 98 
                 ++ ++ale +p l  + +  + ++a + +aka+  Ptls++++ g  +  + + + ++  + t    +++ l+qplfd g+  +++kaak+q+ea+   
  CCG92759.1  42 QVFHQALESDPILSRESYLFNGSQAGVSLAKAALGPTLSINTAAGVGSLIDVNINSFSLATGTsfeFYTVLLTQPLFD-GQKLSALKAAKYQKEAQSSA 139
                 7889**********************************************9999888887776777777777******.9******************* PP

         OEP  99 leqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyll 187
                  + +rqql++ v qay+++l+a+++ ++ e  l l+e++l+++ea +k G+ +++ v +a++r++ ++++l++a+++l++++a Le+++
  CCG92759.1 140 VQYQRQQLIFRVIQAYFGVLQAQANERVSETELSLYEEILKQTEAFLKIGKGDIVAVKEAKARYDLSQSSLITAKNALNISKAILERIT 228
                 *********************************************************************************99888765 PP

  == domain 2  score: 87.0 bits;  conditional E-value: 1.5e-28
         OEP   4 llalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqleqa 102
                 ++++a++n p +k+a+a ++ + a+l+++k   +P ls+ gs ++   ++   + +         ltls+pl+d g++ +r+k+++aq +a+ + l+++
  CCG92759.1 254 WVQTAMANQPLIKQAKALVDVSYAQLEQNKRGHWPVLSVVGSSSQLAVNAIPVNLQVAA----GFLTLSVPLYD-GQIDQRIKQSQAQAKATSEFLRNT 347
                 799*******************66666666666************99998776555443....66888******.************************ PP

         OEP 103 rqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                  +q++l++++a+l+l+++  ql+ a+ al++a+  ++++++ y++G+ s++d+l++ ++l++a +++ +a ++  ++raqL+++ g
  CCG92759.1 348 SDQTKLDTEEAFLNLQSSVLQLKSAKTALDSAKTSYAATKKGYELGTRSIIDLLTVISDLSNATRNYYNALYNHLVSRAQLKAAAG 433
                 **********************************************************************************9876 PP

>> INSIG  Insulin-induced protein (INSIG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00023       2.1      52     105 ..     113     163 ..      79     175 .. 0.75
   2 ?    1.7   0.0     0.018   1.7e+02      45      73 ..     295     349 ..     258     404 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00023
       INSIG  52 lllpwlDrlweekfaeeeeeeeeekeeekaaseadwalvvrsigafvGiafAir 105
                 l  p++D    +k ++ ++++ +++ +++a + ++ +l+ r+i a++G+++A +
  CCG92759.1 113 LTQPLFDG---QKLSALKAAKYQKEAQSSAVQYQRQQLIFRVIQAYFGVLQAQA 163
                 45799999...33344344445567778888889999************99976 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.018
       INSIG  45 l...............agvalGlllpwlDrlweekfaeeeeee...........e 73 
                                 a+ +l l +p+ D  ++++++++++++           +
  CCG92759.1 295 SssqlavnaipvnlqvAAGFLTLSVPLYDGQIDQRIKQSQAQAkatseflrntsD 349
                 3333333333334333777788889999999999999988887555555544440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2898.16
//
Query:       CCG92760.1  [L=692]
Description: NAD synthetase and glutamine amidotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-25   87.9   0.0      9e-25   87.2   0.0    1.3  1  NAD_synthase  NAD synthase
      6e-18   65.1   0.0      9e-18   64.5   0.0    1.2  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0     1e-28     9e-25       6     169 ..     354     529 ..     349     580 .. 0.85

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 1e-28
                   HHHHHHHHHHCTTSEEEEEE-SSHHHHHHHHHHHHHH.....TCGEEEEEE--SSSTTHHHHHHHHHHHHHHTSEEEE---HHHHHHHHH....HHH CS
  NAD_synthase   6 vdflkeyvkkagakgvvlGlSGGvDSslvaalavkal.....gkenvlalllPssvsseedvedalalaenlgievktidikpivrafeq....elk 93 
                   ++ l + ++ +g ++vv+G+SGG+DS+ +  ++ ka+      ++n++a  +P+  ++++ +e+a++l+e +g e   idi+p    + +     + 
    CCG92760.1 354 TQGLVQRLRATGISKVVIGVSGGLDSAHALIICAKAMdilrlPRKNIVACTMPGFATTNKTLEQARKLIEAIGSEEYFIDIRPSCMQLFKdighPFA 450
                   56788999****************************99999899**************************************976555552766333 PP

                   HHH..-HHHHHHHHHHHHHHHHHHHHHHHTEEEB---BHHHHTTT-S-T.TTTT--SBETTTTS-HHHHHHHHHHTT-- CS
  NAD_synthase  94 eak..edlakgNlkaRiRmailyaianklnllvlgTgnksElvvGyfTk.yGDgaadlapiaellKtevkeLakelnvP 169
                   + +   d++ +N++a +R + l+  an ++ lv+gT++ sEl++G+ T   GD  a     a++ Kt +k L++++   
    CCG92760.1 451 QGQklYDITFENVQAGERTNHLFRLANLVKGLVVGTSDLSELALGWSTYgVGDHMAHYHVNASVPKTLIKFLVRWVSKK 529
                   3335799****************************************96479999999999999999999999998743 PP

>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0     1e-21     9e-18      10     260 ..      25     288 ..      16     289 .. 0.83

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 1e-21
                   STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBSSSHHHHHHHHB.HSSSHHHHHHHHHHHHHTEEEEEEEEEEECCTTEEEEEEEEEEEETTS CS
  CN_hydrolase  10 kaadleanlqklleliaeAarkgadLivlPElfitgykeeahfleaAe.aglgetlallaalarkngiavvigliereltngklqayntavlldldg 105
                   k ad  +n++++ el+++A++k+  L+v+PEl+i  y++e+ f+++A      + l +l +++  + +++ +gl+ +   n+ l  +n avll  +g
    CCG92760.1  25 KVADPFYNIEQIIELSKKAVQKKSMLVVFPELSISSYSCEDLFHQSALlDSSLKALSKLLEASVSFPMLLLVGLPLQ--VNQLL--FNCAVLL-CQG 116
                   6788999*****************************************977789999999*****************..99999..*******.667 PP

                   EEEEEEE-SS--E.ECTTSCECCGHHTSCS.......-SSS-EEEETTE.........EEEEEEGGGGGSHHHHHH.HHHTT-SEEEEBH.GCCCTC CS
  CN_hydrolase 106 klvgkyrKlhLfp.geprpptaverelfep.......gdgipvfdtpvg.........kiGaaiCyeigfpellra.lalkgaeilvnlserapvpk 184
                   k++g+  K+ L    e+ +p+++    f         g+++ +f t+++         k+ ++iC++ + p+      al ga ilvnls  ++v+ 
    CCG92760.1 117 KILGIIPKSYLPNyREFYEPRQFSQASFATeksidllGQSEIPFGTNLIfqweeqplfKMAIEICEDLWVPLPPSSfAALAGATILVNLS-ASNVTI 212
                   7789999999964444444444444444447889999665566677777888888888**************99998***********44.566677 PP

                   HHHHHHHHHHHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTE..EEEEEEEHHHHHHHH CS
  CN_hydrolase 185 smgppqwellgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeeg..vliaeidladvratr 260
                    ++ +  +l++   + +   ++  a+ +g   +     + +  +i  +G+ la+ ++++ +  ++ aeidl++++a r
    CCG92760.1 213 GKSDYRKLLVASQSGRCIAAYLYSAAGFGE--STTDLAWDGEGLIYENGTKLAETQRFSYEsqIIFAEIDLDRLQADR 288
                   77777777888888888888888*******..7777778888888899999999999987777**********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 4382.43
//
Query:       CCG92761.1  [L=257]
Description: 4-Amino-4-deoxychorismate lyase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.5e-36  124.1   0.0    1.7e-34  119.7   0.0    2.0  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   9.2e-39   1.7e-34       1     222 [.      12     205 ..      12     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 9.2e-39
  Aminotran_4   1 glfEtmrvyngeiffldeHleRLrksaellglelpfdeeelrkileelleannsengrlrllvsrgggglgaatsepsvavyvsalppgpesekelpl 98 
                  g+fEt+rv+ng  ff +eH   L +sa++l  +l++ +++    l+   ea +++    r++v +  +++           ++++lp + ++  +  l
   CCG92761.1  12 GVFETLRVENGTAFFVEEHWRSLLESAKTL--GLSPKIDFRHGSLHLPKEASGKW----RWIV-GPREEK----------EFFEPLPIETKRGFS--L 90 
                  8*****************************..99999999888888877777776....6666.333333..........388888888888888..5 PP

  Aminotran_4  99 vtssdvrrdapsplpgaKtlnyldnvlarreakergadevllvdedgnvtEgstsNvfivkggelitPplssgiLpGitrrallelakalgleveere 196
                   +s +vr+  +++++++Ktl+yl  ++ar+  ++   de++l++e+g+v+ g++sN+f+vk+++++tP+l++g+ +G++r++++++     + v e+ 
   CCG92761.1  91 EIS-EVRVGSRNWDSRLKTLSYLSHFQARLSVNA---DEAILLNEQGHVVSGAMSNIFFVKNNKVFTPSLQTGCRNGVIRQWVMSQ-----IDVAEAH 179
                  555.5************************98865...58**********************************************9.....7899*** PP

  Aminotran_4 197 itlkdleeadeafltntlrgvlpvrs 222
                  + ++ l++ade+fltn++ g+ pv +
   CCG92761.1 180 FGPETLQAADEIFLTNSWIGIKPVVR 205
                  ***********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 1693.70
//
Query:       CCG92762.1  [L=727]
Description: Thiol:disulfide interchange protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-18   66.0   0.0    5.5e-18   65.2   0.0    1.4  1  DsbC            Disulphide bond corrector protein DsbC
      2e-17   63.1   0.0    5.7e-17   61.7   0.0    1.8  1  Thioredoxin_7   Thioredoxin-like
    6.8e-09   35.9  21.2    1.4e-08   34.9  21.2    1.5  1  DsbD            Cytochrome C biogenesis protein transmembrane
    5.4e-06   26.8   0.0    1.1e-05   25.8   0.0    1.5  1  Thioredoxin_2   Thioredoxin-like domain
    0.00088   19.2   0.0     0.0017   18.3   0.0    1.4  1  Thioredoxin     Thioredoxin
     0.0013   18.7   0.0     0.0024   17.9   0.0    1.4  1  Thioredox_DsbH  Protein of unknown function, DUF255
  ------ inclusion threshold ------
       0.23   10.2   6.0       0.59    8.8   0.8    2.3  2  DUF2206         Predicted membrane protein (DUF2206)


Domain annotation for each model (and alignments):
>> DsbC  Disulphide bond corrector protein DsbC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   2.1e-21   5.5e-18       3     118 ..      39     159 ..      37     161 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 2.1e-21
                 CCCECCCCEEEEEEECCCEEEEEEEE-TTEEEECCCE..CE.....EEESCCCC.CEEEEE---EEEECCCTEEEEEEECSEEEEEEEEECEC...... CS
        DsbC   3 ellkpeeafkfsaagdtntlalrweiapgyylYwdkp..sg.....eltlsagvalgelqlPapeekedeffglevevYegevtlplplkaaad..... 89 
                 +ll++ +a+   a+g+++ +alr+++++g+++Yw +p  +g     +++l+ag  +g++q+P+p +++ +   l++++Yege  l +p++++++     
  CCG92762.1  39 SLLSELDAV---APGSHFYVALRLKMDEGWHTYWFNPgdAGsatkiDWALPAGLHAGPIQWPSPSVISLPP--LTSYGYEGECWLLIPMDLSQEqqvgs 132
                 566666665...4999*********************875588999*************************..99*************88888788999 PP

                 SSEEEEEEEEEEEETTTEEEEEEEEEEEE CS
        DsbC  90 paelklkvtyqgCaeaglCyppetklvll 118
                 + +lk++v++  Ca+   C+p +++l+l+
  CCG92762.1 133 TVTLKANVQWVECAQ--SCLPGSADLTLT 159
                 9999***********..*****9999876 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   2.2e-20   5.7e-17       1      81 [.     598     683 ..     598     684 .. 0.91

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 2.2e-20
                    ---SSHHHHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HH.HT-EEEEESS--S-GGG.....-TT---SSEEEEE CS
  Thioredoxin_7   1 ewlsdldealakaaergkpvlvffgaswcftCqalerdflsdeevkaala.ekfvllrvdvterdani....leldeqgvPvvafl 81 
                    +w+   +++l++ +++g+pv+v+f+aswc tCq++++  l+++ vk+ +    +v + +d+t+rd++i     +l ++gvP+++f+
     CCG92762.1 598 DWIPFSEAKLEEYKQQGIPVFVDFTASWCLTCQVNKKIALQNPAVKKKFEeVGVVKMEADWTNRDPKItevlESLGRSGVPTYVFY 683
                    5777778999****************************************889***************87655555699******8 PP

>> DsbD  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9  21.2   5.4e-12   1.4e-08       2     183 ..     315     493 ..     314     521 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 5.4e-12
        DsbD   2 flaGllsflsPCilpliPaylsyisgvsve....dvktekkkvkvllkallFvlGlslvfvslglsaaflgqllkdvkevirrvaglivillGlhflgv 96 
                 f +Gl+  l PC+lp+i + +  + g + e    ++ ++   v  +l++++ v+Gl + +   gl  +   ql    +      ++l   l+ l++lgv
  CCG92762.1 315 FIGGLILNLMPCVLPVISLKVLNLVGAAKEegssSIIHGLLFVLGVLSSFWIVVGLLIFLREKGLELGWGFQLQ---SPPFVAFMALFFFLIALNLLGV 410
                 89***************997655554443301113444444446678999999999999999999888888887...444555678889999******* PP

        DsbD  97 fkievleklklllkikkkaelsvlgalllGltFalgwsPCigPvlasvlalaaskeslakgallllvyvlGlaipfllvglllellk 183
                 ++i +     +  +i +ka+  +lg++l G++ +l++sPC++P ++s + +a  +  +   +l+++   lG+a p++l++++ +ll+
  CCG92762.1 411 YEIGLSLISAQ--SIVEKAKG-YLGSFLNGVLATLVASPCTAPFMGSAIGFALAQPPV-VIVLVFTSLGLGMAFPVFLLSVFPSLLR 493
                 **886333333..34567776.8**************************999988833.33444445556777899*****998765 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   4.4e-09   1.1e-05       2      87 ..     611     683 ..     610     704 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 4.4e-09
  Thioredoxin_2   2 kgngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfl 87 
                    k++g pv+v+ft+++C  C+  kk   ++++v+++     +++  + k++a w+++++k          e+++++g +g+Pt vf+
     CCG92762.1 611 KQQGIPVFVDFTASWCLTCQVNKKIALQNPAVKKK-----FEEVGVVKMEADWTNRDPK--------ITEVLESLGRSGVPTYVFY 683
                    67899******************************.....******************8........78999**********9997 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.5e-07    0.0017      16      68 ..     612     666 ..     600     689 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.5e-07
                  TTSSEEEEEEE-TTSHHH...HCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHT CS
  Thioredoxin  16 kekklvlveFyApwCghC...kalaPeleklaeelkdkvklakvdvdenedlakky 68 
                  ++  +v+v+F+A+wC  C   k++a +  +++++++ +v ++k+++d  +  +k  
   CCG92762.1 612 QQGIPVFVDFTASWCLTCqvnKKIALQNPAVKKKFE-EVGVVKMEADWTNRDPKIT 666
                  44679*************555589988889999998.9999**9999766555444 PP

>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   9.3e-07    0.0024      19      87 ..     596     666 ..     582     725 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 9.3e-07
  Thioredox_DsbH  19 pvdWypwgeealekakeedkpillsiGysachWChvmekesfedeevaallnes.fvsvkvDreer.Pdld 87 
                       dW p++e+ le+ k++  p++++   s+c  C+v +k + ++++v + ++e   v++  D  +r P + 
      CCG92762.1 596 KEDWIPFSEAKLEEYKQQGIPVFVDFTASWCLTCQVNKKIALQNPAVKKKFEEVgVVKMEADWTNRdPKIT 666
                     459********************************************988776425556666544434444 PP

>> DUF2206  Predicted membrane protein (DUF2206)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.8   0.00023      0.59     107     188 ..     346     421 ..     339     427 .. 0.86
   2 ?    3.6   0.4    0.0089        23     122     180 ..     536     591 ..     533     593 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00023
     DUF2206 107 qissllhtvskylhliiqfliviGvlsvlflrkkkyrlsieylaivlvllvilvasivlpyfasalntaRlyqilliflapf 188
                  +ss+ h + ++l ++  f iv+G+l   flr+k  +l+      + +     va+++l +f  aln   +y+i l +++  
  CCG92762.1 346 GSSSIIHGLLFVLGVLSSFWIVVGLLI--FLREKGLELGWG----FQLQSPPFVAFMALFFFLIALNLLGVYEIGLSLISAQ 421
                 6799*********************98..999998888888....5667778899999999999999999999998888765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0089
     DUF2206 122 iiqfliviGvlsvlflrkkkyrlsieylaivlvllvilvasivlpyfasalntaRlyqi 180
                 i+ +l++iG+ s ++    k+      l + +v+ ++++a++  ++   + +t+Rl+ +
  CCG92762.1 536 ILVALLFIGLGSWIYG---KFSTPFHPLGVRVVSSLLALAILSSSFYYAVVETERLFAL 591
                 77899*******5555...699999999*****************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4856.59
//
Query:       CCG92763.1  [L=484]
Description: Excinuclease ABC subunit C [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-49  167.0   0.0    5.4e-49  166.1   0.0    1.4  1  UvrC_HhH_N    UvrC Helix-hairpin-helix N-terminal
    9.3e-11   41.7   0.0    5.6e-10   39.2   0.0    2.3  2  HHH_2         Helix-hairpin-helix motif
    4.6e-10   38.9  10.8    4.6e-10   38.9  10.8    2.6  3  UVR           UvrB/uvrC motif
    1.1e-09   38.4   0.6    3.3e-09   36.9   0.0    2.2  2  GIY-YIG       GIY-YIG catalytic domain
    2.6e-08   33.3   0.0    1.4e-07   31.0   0.0    2.3  2  HHH           Helix-hairpin-helix motif
      8e-06   26.4   0.1    2.8e-05   24.6   0.1    2.0  1  HHH_5         Helix-hairpin-helix domain
  ------ inclusion threshold ------
      0.021   15.1   1.6       0.15   12.4   0.0    3.1  4  HHH_3         Helix-hairpin-helix motif
      0.031   14.6   3.1       0.19   12.1   0.0    3.0  2  HHH_8         Helix-hairpin-helix domain
      0.057   12.3   0.3        4.5    6.1   0.2    2.1  2  LMBR1         LMBR1-like membrane protein
        0.1   11.1   0.2       0.14   10.7   0.2    1.1  1  RRN3          RNA polymerase I specific transcription initiat
        1.8    8.8   6.8        1.1    9.5   1.6    2.5  2  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> UvrC_HhH_N  UvrC Helix-hairpin-helix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.1   0.0   3.3e-52   5.4e-49       2     153 ..     265     413 ..     264     413 .. 0.95

  Alignments for each domain:
  == domain 1  score: 166.1 bits;  conditional E-value: 3.3e-52
                 HHTT-SS---EEEEEEEEEETTTEEEEEEEEEETTEE-GGG-EEEEEE.-SS--HHHHHHHHHHHHHTTS.....---SEEEESSSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  UvrC_HhH_N   2 ellglkekpkriecyDiShiqgtntvgsmvvfedgkpkkseyRkfkiksvkegdDyaamrevlrRrfkrllkefsklPdLiliDGGkgqlnaakevlee 100
                  +l+l++ p  iec+DiS+i+  ++v+smv f++gk+++s+yR+++ik+v ++dD+a+m+ev+rRr+kr+l+e  kl dLi++DGGkgql+ a ++l++
  CCG92763.1 265 TVLSLPKLPLIIECFDISNISSLHKVASMVLFREGKADRSSYRRYRIKTVVGQDDFACMEEVIRRRYKRILEEGGKLADLIIVDGGKGQLSSALKALDS 363
                 6899*********************************************************************************************** PP

                 TT-.---EEEEES............SSSEEEE--TT-HHHHHHHHHHHHHHHHH CS
                 xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  UvrC_HhH_N 101 lgl.kipvvglaKdkkrktrakaeereeevlelkkssealkllqrirdeaHrfA 153
                 lgl ++ ++glaK++++  r   +e     l+l+kss al+llqrirdeaHr+A
  CCG92763.1 364 LGLsNLSLIGLAKENEEIYRVGCSEP----LILDKSSGALRLLQRIRDEAHRVA 413
                 *************8877666654444....8*********************98 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.8   2.9e+03      37      64 .]     402     429 ..     398     429 .. 0.83
   2 !   39.2   0.0   3.4e-13   5.6e-10      13      57 ..     438     482 ..     433     484 .] 0.90

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.8
       HHH_2  37 LlevddiGeeiAqsivefFeneknreli 64 
                 L+ ++d + ++A++ ++ + +++++e i
  CCG92763.1 402 LQRIRDEAHRVANAYHQLLLKKRMKESI 429
                 7889999999999999999888888765 PP

  == domain 2  score: 39.2 bits;  conditional E-value: 3.4e-13
       HHH_2  13 ektAklLakrFksldaLkkasleeLlevddiGeeiAqsivefFen 57 
                 e+  klL ++F+s+d+L+ka++ee+++v++iG + A++i +f+++
  CCG92763.1 438 ENRKKLLIQSFGSVDRLRKATMEEIAAVKGIGRKLAEKIFSFLAS 482
                 555699************************************976 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.2   3.7e+03      11      20 ..      58      67 ..      56      67 .. 0.83
   2 ?   -3.6   0.1       6.6   1.1e+04      29      36 .]     116     123 ..     116     123 .. 0.85
   3 !   38.9  10.8   2.8e-13   4.6e-10       1      35 [.     204     238 ..     204     239 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.2
         UVR 11 meeAaenedF 20
                + eA+++++F
  CCG92763.1 58 LIEAVADLEF 67
                669*****99 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.6
         UVR  29 qinalkkq 36 
                 qi++lkkq
  CCG92763.1 116 QITRLKKQ 123
                 89999987 PP

  == domain 3  score: 38.9 bits;  conditional E-value: 2.8e-13
         UVR   1 kklikeLeeemeeAaenedFEkAAklRDqinalkk 35 
                 k++ike++++meeAa++++FEkAA+lRD ++al++
  CCG92763.1 204 KEMIKEIRQKMEEAARAQEFEKAAELRDLLEALEQ 238
                 799******************************97 PP

>> GIY-YIG  GIY-YIG catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   2.1e-12   3.3e-09       2      78 .]      14      92 ..      13      92 .. 0.83
   2 ?   -2.5   0.2       3.9   6.3e+03      51      66 ..     207     225 ..     187     227 .. 0.64

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 2.1e-12
                -EEEEEEETTT--EEEEEESSHHHHHHHHHHHHHHT--S-H...S.STEEEE.EEEE----HHHHHHHHHHHHHHTTSSSS CS
     GIY-YIG  2 ggvYiirskenkliYvGstknlekRlkqHnagkkakytrkk...gkkpfeli.ileifptksealelEkklikkyksnkyn 78
                 gvY++++k n +iYvG++ +l kR +q++  +k+    +k    ++ ++ + ++++++ + ea  lE +lik++++ +yn
  CCG92763.1 14 PGVYLFKDKLNRIIYVGKAVDLHKRVSQYFHPSKKFSGDRKlkaLIEAVADLeFYCVHS-EAEAVLLEGRLIKEFRP-RYN 92
                69***************************999988777777788777777773555555.55556************.998 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.9
                 EEEE----HHH...HHHHH CS
     GIY-YIG  51 ileifptksea...lelEk 66 
                 i ei ++ +ea   +e+Ek
  CCG92763.1 207 IKEIRQKMEEAaraQEFEK 225
                 4455555566656688887 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.9   4.7e+03      13      21 ..     430     438 ..     427     438 .. 0.77
   2 !   31.0   0.0   8.5e-11   1.4e-07       1      30 []     450     479 ..     450     479 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.9
                 HHTSTT-SH CS
         HHH  13 LlalPGVGp 21 
                 L ++PGV +
  CCG92763.1 430 LDECPGVSE 438
                 5679***75 PP

  == domain 2  score: 31.0 bits;  conditional E-value: 8.5e-11
                 SHHHHHTSSHHHHHTSTT-SHHHHHHHHHH CS
         HHH   1 sleglipasreeLlalPGVGpktAeaIlsy 30 
                 s+++l+ a++ee++a++G+G+k Ae+I+s+
  CCG92763.1 450 SVDRLRKATMEEIAAVKGIGRKLAEKIFSF 479
                 67899**********************997 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   1.7e-08   2.8e-05       6      55 ..     432     480 ..     427     482 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.7e-08
                 TSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHH CS
       HHH_5   6 svsGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriilel 55 
                 + +G+ + + + l+   ++sv+ l +a+ ee+a+++GiG k+Ae+i   l
  CCG92763.1 432 ECPGVSENRKKLLIQS-FGSVDRLRKATMEEIAAVKGIGRKLAEKIFSFL 480
                 5578888888888888.*****************************8765 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       6.1   9.9e+03       4      10 ..     104     110 ..     104     110 .. 0.91
   2 ?   -3.1   0.0       6.2     1e+04      39      52 ..     256     269 ..     253     271 .. 0.74
   3 ?   -0.7   0.0       1.1   1.8e+03      43      60 ..     416     433 ..     402     436 .. 0.76
   4 ?   12.4   0.0   8.9e-05      0.15       9      32 ..     455     478 ..     451     481 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.1
       HHH_3   4 vgvdiNt 10 
                 v+vd+Nt
  CCG92763.1 104 VKVDLNT 110
                 79****9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.2
       HHH_3  39 pfksreeLlkvkgl 52 
                 p++++eeL+ v  l
  CCG92763.1 256 PLEDLEELKTVLSL 269
                 67788899888665 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.1
       HHH_3  43 reeLlkvkglgpktfeql 60 
                   +Ll +k++++  ++++
  CCG92763.1 416 YHQLLLKKRMKESILDEC 433
                 579*********999988 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 8.9e-05
       HHH_3   9 NtAsaeeLqklpGlgpklAknIva 32 
                  +A+ ee++ ++G+g klA++I  
  CCG92763.1 455 RKATMEEIAAVKGIGRKLAEKIFS 478
                 58999***************9975 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.4      0.41   6.6e+02      12      33 ..     208     228 ..     204     266 .. 0.73
   2 ?   12.1   0.0   0.00012      0.19      38      67 ..     454     480 ..     446     481 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.41
                 HHHHHHCT--CCCHHHHHHHHC CS
       HHH_8  12 adllelkgedpfrvraYrrAar 33 
                  ++++++ e++ r++ + +Aa+
  CCG92763.1 208 KEIRQKM-EEAARAQEFEKAAE 228
                 4555555.89999999999985 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00012
                 -SS-HHHHTTHCTTSTT--HHHHHHHHHHH CS
       HHH_8  38 lpeeitsleeeltklpgiGkkiaakieeil 67 
                 l +++   ee + +++giG k+a+ki  +l
  CCG92763.1 454 LRKATM--EE-IAAVKGIGRKLAEKIFSFL 480
                 444444..46.9**************8887 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2    0.0028       4.5     239     323 ..     160     251 ..     114     293 .. 0.67
   2 ?    4.4   0.0     0.009        15     182     288 ..     365     466 ..     361     480 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0028
       LMBR1 239 esdplrkyleeilkkvPeeiaeklks.....nenkteeslaklekqlikalqkrertekqwkrllekalelediik...nksskekefksses 323
                  ++ ++++l+ i+k++ +    k+++       +k+ e l    k++ik+++++ ++ ++  +  eka+el d+++   + ++  ++f ++ +
  CCG92763.1 160 TEKDYKHCLDHIIKNCSAPCIGKVNQaeyyqRVQKACEFLEGRSKEMIKEIRQKMEEAAR-AQEFEKAAELRDLLEaleQTTKPTRRFAKQLP 251
                 3334789*******9999999999998888655556666666667777777666555444.77777777888776511144444555555544 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.009
       LMBR1 182 GlvelPrslwreiksdldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklksnenkteeslaklekql 280
                 Gl  l  sl+    ++ +ee+ ++ ++++ + ++ + a r l+ + +e+ ++ + + +    +++ e il+++P + +++ k+   ++  s+ +l+k++
  CCG92763.1 365 GLSNL--SLIG--LAKENEEIYRVGCSEPLILDKSSGALRLLQRIRDEAHRVANAYHQLLLKKRMKESILDECPGVSENR-KKLLIQSFGSVDRLRKAT 458
                 55555..8889..899999*********************************999977775669***********66665.443444555555555555 PP

       LMBR1 281 ikalqkre 288
                  ++++  +
  CCG92763.1 459 MEEIAAVK 466
                 55555444 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   8.6e-05      0.14       2      60 ..     182     240 ..     181     256 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.6e-05
        RRN3   2 efskkmlkefVrnALeekekgdseqydeLleqfsekkeeseapslaelkqllkalssvv 60 
                 +++++ +++ V++A e  e  ++e ++e+ ++++e+++ +e ++ ael+ ll+al++  
  CCG92763.1 182 KVNQAEYYQRVQKACEFLEGRSKEMIKEIRQKMEEAARAQEFEKAAELRDLLEALEQTT 240
                 578899************9999*********************************9875 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.6   0.00069       1.1      39      92 ..     190     242 ..     183     257 .. 0.81
   2 ?    1.3   0.3      0.25     4e+02      18      67 ..     420     471 ..     402     478 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00069
                   HHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  39 relqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelke 92 
                   +++q++ e l  +++e+ keI +++++   +++  ++++el + l+ale++ k 
    CCG92763.1 190 QRVQKACEFLEGRSKEMIKEIRQKMEEA-ARAQEFEKAAELRDLLEALEQTTKP 242
                   678889999999*************996.6677788999999999999988765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.25
                   HCCCTCCCHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHCCCCCCTT.S CS
  Seryl_tRNA_N  18 lkkRgedkadvdelleldekrrelqve.leelqaerNelskeIgkakkkk.e 67 
                   l k++  ++ +de   + e+r++l ++ + ++ + r++  +eI+  k  + +
    CCG92763.1 420 LLKKRMKESILDECPGVSENRKKLLIQsFGSVDRLRKATMEEIAAVKGIGrK 471
                   4445578888999999999998876541567888888888888888877733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1292  (0.072062); expected 358.6 (0.02)
Passed bias filter:                      870  (0.0485247); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 3104.00
//
Query:       CCG92764.1  [L=740]
Description: hypothetical protein MFUM_80001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-28  100.1  32.0    2.7e-28  100.1  32.0    1.9  2  TonB_dep_Rec  TonB dependent receptor
    3.1e-06   27.7   0.0    1.8e-05   25.3   0.0    2.1  2  Plug          TonB-dependent Receptor Plug Domain
  ------ inclusion threshold ------
       0.12   12.9   0.0       0.37   11.3   0.0    1.8  1  Herpes_HEPA   Herpesvirus DNA helicase/primase complex associ


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.2  16.2         3   1.8e+04     319     427 ..     172     335 ..     113     343 .. 0.53
   2 !  100.1  32.0   4.5e-32   2.7e-28      28     470 .]     248     739 ..     235     739 .. 0.61

  Alignments for each domain:
  == domain 1  score: -8.2 bits;  conditional E-value: 3
                   EEEEEEE..........EE...EEE..EETTEEEEEEEEEEEE...........EEECEC.....EEECTTTTSSTT...............EESEE CS
  TonB_dep_Rec 319 rikGvEl..........el...syr..ltpgWglglsgggytY...........ydagdd.....sdaddggnplpn...............vPkht 369
                    ++G+E+          ++   +y+   +p ++  +++g++ +           +++  d     sda+ +g+++ n               +P   
    CCG92764.1 172 ISRGAEAfnygfatlfgAVnfvTYTgyTAPPYSAYFTAGSFGWlqgsieaagveSKT--DyfavlSDASAEGYRFHNsfnnawlntnigykiTPNAE 266
                   345555522111112221122211122233333222333344466665555544222..13356667777777755533334443444444445555 PP

                   EEEEEEEECSEEEEEEEE..........SE.EEEEEECCSSEEEEECE.....CCEEEE--EEEEEEEEEEEES CS
  TonB_dep_Rec 370 anlgltYkfpaggWgagl..........ll.agarYvavggrrygdaa.....ntfrrvpgYtlldlslgYklp 427
                    ++++tY   +  W++ +          ++ a+  Yv    r ++d++      t+  ++   ++++ +++  +
    CCG92764.1 267 NRIYFTY--SNQQWQVPGplaleevltdPTtANPAYVEGDYRQFWDTTrladkATY-TIDQHQTVNMGISW--T 335
                   5555666..55667755577777777763324446654444444444444433333.77777777777777..3 PP

  == domain 2  score: 100.1 bits;  conditional E-value: 4.5e-32
                   TTEEEEEEE.EEEEEEEEEECCCEECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE....EEEEEEEE............. CS
  TonB_dep_Rec  28 gdlgsalsr.gylgtnplyygdnysetdnkrlrlgydydlddnlswklslraglnYsstdgdsdynnsglgg....grsynrdn............. 106
                   +++ + +++ gy  t++ + ++ y++++n+++++   + l++ l+     +a+ +Y       dy+++++++     ++y+ d+             
    CCG92764.1 248 FNNAWLNTNiGYKITPN-AENRIYFTYSNQQWQVPGPLALEEVLTD--PTTANPAYV----EGDYRQFWDTTrladKATYTIDQhqtvnmgiswtnl 337
                   33333333322222222.4444444444444444444443333111..222233344....222222222222222111111111111223322222 PP

                   ...CEEE...EEEEEEEEEEEEEEEE...EE......EEEEEE....EEEEEEEEEECCBEESCCTC....CSEEEEEEEEEEEEEEEEEEEEETTE CS
  TonB_dep_Rec 107 ...dyyg...lgnvlaaeldlngdlw...fG......snladg....ldyrklsddgydaydplnps....gdasdsvdrdsyglyaqdnikltdrl 180
                      ++yg   +++++ ++l +n++++   +G           g    ++++        +++ l ++    ++a+ + +  +  +ya d++ +++++
    CCG92764.1 338 hqiTFYGlffQSSNNFFSLPCNYTNTmdlYGhrnlivA----GampmGEFY------QENWNKLLGTiqgaPMATYNMTVVNIPIYAYDQFWVNEKF 424
                   22222223222222222233333333344454221111....111223333......23333333334433455555555555578889888989** PP

                   EEEEEEEEEEETTCSSSS........EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEECCCCCEEEECSTT---EEEEEEEEE CS
  TonB_dep_Rec 181 tltlGlRydhysvfgkdlrag.....afsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggsngaggalsngnpdLkPEtsknyelG 272
                   +++l+l   + + ++  +        + + ++s+f+P++gl y++ ++ +++ s++r+f  Psl+e+  ++    ++   ++n   +++ + + e+G
    CCG92764.1 425 SINLALQAVYDRLTNEAYKDLihrsvDTTLTFSQFNPKLGLLYQVDPHNQVYTSVARSFEPPSLYETAISPNALPPNLALYPN---RAQNAITAEIG 518
                   *******6555555444444466888788888*************************************87777777778888...*********** PP

                   EEEEETTEEEEEEEEEEEEEEEEEEESSSSCSTTTCSEEEEEEEEEEEEEEEEEEEEEEETT.....................EE.EEEEEEEEEEE CS
  TonB_dep_Rec 273 lkldddrlnltlayFridiknfittdpdgpslgglgdfqyqNvgkarikGvElelsyrltpg.....................Wg.lglsgggytYy 347
                    + + dr+n+++a+F++ ++n +  ++ +p+l++l   ++ N++ ++ +G+E++l+ +l+ g                     W  + l+g+     
    CCG92764.1 519 TRGQWDRFNWSFAFFQSWVTNELLEVSLNPPLNTL--IYTINAPPTTHRGIEISLNTTLARGlmvsdsdpqnqdqivlyqifdWYrFYLNGNF---- 609
                   **999****************************99..888999999*******9966644442222223333344444333333345556663.... PP

                   EECEC.....EEECTTTTSSTTEESEEEEEEEEE.ECSEEEEEEEESEEEE.EEECCSSEEEEECECCEEEE--EEEEEEEEEEEES.SSEEEEEEE CS
  TonB_dep_Rec 348 dagdd.....sdaddggnplpnvPkhtanlgltY.kfpaggWgaglllaga.rYvavggrrygdaantfrrvpgYtlldlslgYklp.knltlslgv 436
                             ++    gn+l +vP++++ + l Y ++  +g+   + + ++  +   ++ +  d +nt+   pg +ll +++gY+ p k+l+++l +
    CCG92764.1 610 ----FsptthQEIHLSGNQLFGVPEYSYMAQLLYmHP--SGFY--I-GPNVmAW---ST-YPVDLVNTT-FAPGTALLGFRIGYQNPkKHLSIYLDG 692
                   ....1333347899***************99999655..3333..2.2222356...55.777999999.**************8889********* PP

                   ESTTET.CSCEEESTT............TTTCCEB--SEEEEEEEEE CS
  TonB_dep_Rec 437 nNLfdk.ryyassgyy............glggypgpgRtfrlglryk 470
                   +NL+++ + +++s+ +            ++++ pg g  ++ g++++
    CCG92764.1 693 RNLTNEhYVAMVSDVFdasnggkiplskQTYFWPGDGWAIYGGISWN 739
                   *****434333333336777778999999999999999999999885 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0     3e-09   1.8e-05       3     107 ..      77     188 ..      76     189 .. 0.93
   2 ?   -1.1   0.0      0.46   2.8e+03      57      75 ..     684     702 ..     669     719 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 3e-09
                 GCCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-G.......GCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEES CS
        Plug   3 kdtpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgs.......nrvlvlvDGvpianggsgagdlssidpedierievlkG 94 
                 +++p+s + + a+ +++  a +l+d++   pg+ ++ + +g++a +isiRG g        + + +l DG+p++ +++  ++   +dp + +   + +G
  CCG92764.1  77 NELPASSNLIEAKRVRQGRAATLQDLFLFQPGIWTQPGFTGPNAFRISIRGSGLstgagteRGIWFLQDGLPLNPPDGVLFNQGEFDPLAYQYSVISRG 175
                 578999999*******************************************88899999**************9999999999*************** PP

                 SCHCTTSSTGSSE CS
        Plug  95 pasalyGsdaigG 107
                 + +  yG  ++ G
  CCG92764.1 176 AEAFNYGFATLFG 188
                 *******766665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.46
                 GCSEEEETTEEESCCCCSC CS
        Plug  57 nrvlvlvDGvpianggsga 75 
                 ++  +++DG++++n ++ a
  CCG92764.1 684 KHLSIYLDGRNLTNEHYVA 702
                 56789******99833333 PP

>> Herpes_HEPA  Herpesvirus DNA helicase/primase complex associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.2e-05      0.37      23      58 ..     408     443 ..     398     453 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.2e-05
  Herpes_HEPA  23 rvllpkafdlLvtndesksnlallaffralhekvfg 58 
                    +   a+d +++n++   nlal+a++  l +++++
   CCG92764.1 408 VNIPIYAYDQFWVNEKFSINLALQAVYDRLTNEAYK 443
                  4444458***********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 4994.93
//
Query:       CCG92765.1  [L=114]
Description: Glutaredoxin-related protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-10   38.5   0.0    1.4e-09   38.0   0.0    1.2  1  Glutaredoxin  Glutaredoxin
  ------ inclusion threshold ------
      0.058   13.8   0.0       0.11   12.9   0.0    1.4  1  GST_N_3       Glutathione S-transferase, N-terminal domain
      0.081   12.9   0.0       0.14   12.2   0.0    1.3  1  Mistic        Membrane-integrating protein Mistic


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   2.3e-13   1.4e-09       1      59 [.       6      64 ..       6      65 .. 0.97

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 2.3e-13
                  EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTEE CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvfidgkh 59
                  +v + kp C++++ ++++Lk++++++e  d+ + +e  ee+  +sg++  P+v ++g+ 
    CCG92765.1  6 IVAYLKPSCGWSNGVRAILKKYNLPYEDKDIINYPENMEEMIMKSGQPFSPCVEVNGEM 64
                  68899****************************************************85 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.9e-05      0.11       4      59 ..      11      67 ..       9      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.9e-05
                -TTSHHHHHHHHHHHHHT--EEEE--.-TTTTHHHHHHH-TT--SSEEETTS-EEES CS
     GST_N_3  4 fpaSpyarrvrlaLnekglpvevvev.tpgehdeellaknplgkvPvLeddgealtd 59
                 p++ +++ vr +L+  +lp+e  ++ ++ e+ ee+  k+++   P  e +ge+l d
  CCG92765.1 11 KPSCGWSNGVRAILKKYNLPYEDKDIiNYPENMEEMIMKSGQPFSPCVEVNGEMLAD 67
                699*******************8777589999**********999999999998877 PP

>> Mistic  Membrane-integrating protein Mistic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.3e-05      0.14      14      47 ..      18      51 ..      16      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.3e-05
                HHHHHHHHH--SSS-SS-SS-SHHHHHHHHHHHH CS
      Mistic 14 egldafieLYNeseedkpliefeeevleaiekAk 47
                +g+ a+++ YN   edk +i++ e+++e i k  
  CCG92765.1 18 NGVRAILKKYNLPYEDKDIINYPENMEEMIMKSG 51
                68889999*********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 874.98
//
Query:       CCG92766.1  [L=324]
Description: Endonuclease IV [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-33  115.9   0.0    2.1e-33  115.6   0.0    1.1  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
     0.0068   15.6   0.0     0.0085   15.3   0.0    1.2  1  PRMT5_TIM     PRMT5 TIM barrel domain


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   0.0   2.3e-37   2.1e-33       3     210 .]      65     282 ..      63     282 .. 0.93

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 2.3e-37
                   HHHHCT-SEEEEECCTCSHHHHC..HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS....HHHHHHHHHHHHHHHHHHTBSEEEEEBCC CS
  AP_endonuc_2   3 aaaeaGfdgvElfgrdlvpvsel..sdeelrelrkaldelglriaslslftrfgypdederear....reesvdalkraielaaaLGapllvlhpGt 93 
                   +a+++Gf + ++f+++ + + +   ++e+++++ ++ +++ +      +f++f+y+             e+s++al +++ +a++L  p++vlhpG 
    CCG92766.1  65 RAKACGFSAAQIFLKNCRRWEDPivDPEDIAQFLSLKEKYRIF-----FFGHFSYLINLCA--SteqtAEKSIHALLQEMAIASKLTLPFVVLHPG- 153
                   699*****************999********************.....8888888777433..2346779**************************. PP

                   GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC..HHHHHHHHHHTTTT.EEEEEEHHHHHHH......TTTHHHHHHHHHG CS
  AP_endonuc_2  94 agagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd..eelarlldavdspn.vgvclDtgHllia......eedvddalralad 181
                     + + +   ea+e l  +ln + +++e+e vk+alEt+ag+g + g+  e+l++++++++ p  + +clDt+Hl+ a      +e ++++++++  
    CCG92766.1 154 --SSAVEKTIEAIEVLSTRLNLVMEMTEAEEVKIALETMAGQGGQIGRniEQLKAIFERLNKPErFCFCLDTAHLWEAgydvksKEGYEELIEKISA 248
                   ..888888889************************************9************************************9999999999888 PP

                   G.....EEEEEE.EESSTTTTSSTTEESTTSSSS CS
  AP_endonuc_2 182 r.....ikhvHikDakgdlgagrdrhvpigeGei 210
                         i+++H++D+  + g+++drh+ igeG+i
    CCG92766.1 249 AlglsrIAAFHLNDSSSPFGSNVDRHAHIGEGTI 282
                   888888**************************97 PP

>> PRMT5_TIM  PRMT5 TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.5e-07    0.0085      50     124 ..     110     177 ..      83     255 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.5e-07
                 EE--TT--TT-SSHHHHHHHHHHHHHHHHHHHHHT-SEEEEE--SS..--HHHHHHHHHHHCCSSS-EEEEEEES CS
   PRMT5_TIM  50 glisewidldsedeeirkdsekvLkkelayaaylglralilpgpslreklanyaraissalesanavtisisipl 124
                 g +s  i+l+ + e+ +++s  +L +e+a a+ l l+ ++l + s+   +++ + ai+   +   +++++++  +
  CCG92766.1 110 GHFSYLINLCASTEQTAEKSIHALLQEMAIASKLTLPFVVLHPGSS--AVEKTIEAIEVLST---RLNLVME--M 177
                 678999*************************************999..78888777776321...2333333..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2492.57
//
Query:       CCG92767.1  [L=812]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-16   61.0   1.1    1.2e-08   34.8   0.2    3.5  4  AsmA_2    AsmA-like C-terminal region
     0.0016   17.3   1.8     0.0039   16.1   0.0    2.3  3  AsmA      AsmA family
  ------ inclusion threshold ------
      0.077   12.5   0.8       0.65    9.4   0.1    2.9  3  AsmA_1    AsmA-like C-terminal region


Domain annotation for each model (and alignments):
>> AsmA_2  AsmA-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.6e-08   9.3e-05      64     170 ..     134     304 ..      78     308 .. 0.82
   2 ?   -3.6   0.0       1.1   6.4e+03       2      36 ..     377     411 ..     376     415 .. 0.81
   3 ?   -0.5   0.0      0.12   7.3e+02     130     170 ..     484     524 ..     476     528 .. 0.80
   4 !   34.8   0.2   1.9e-12   1.2e-08       6     182 ..     610     779 ..     605     784 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.6e-08
      AsmA_2  64 laevlgGkgslelnlswqgapls.pdlssLsGdlsleledgqilgvs................................................llrd 113
                   + ++ ++ ++++ s ++ p++    ++ + +++l  + ++i++ s                                                  ++
  CCG92767.1 134 GQPLIQSAIVSNATISIPLTPHNeLEIHQVNASVKLLADAIEIKKASgrilninfdlkgkielngfppfypqteeqiqwidavwskvmatldqleT-QK 231
                 555668888889999999999885558999999999999999999888888888888888888888888888888888888887777777664330.44 PP

      AsmA_2 114 lgllk................ltldfrdlfgeglafddikgtftienGvvttkdfklkgpaaavtvsGtvdld 170
                 + ll+                 +l  ++l  ++  +d+i ++++++ Gv+++++f+++ p +++++ G++d+ 
  CCG92767.1 232 PLLLEgalnlstknpenaaaaFQLSSKKLWFKNAPIDNIFAELRLNSGVLQVEEFTIELPRGEMSAWGEIDFK 304
                 44444677777778888888888889999999***************************************97 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.1
      AsmA_2   2 gnvsgklrlkdeglrldnlrlrspggklsgsgsws 36 
                 +++s+ ++ ++++l + +++l++ +g l g++ w+
  CCG92767.1 377 SELSLPIAYDGKKLFIPEIKLKTADGMLIGEMLWD 411
                 66777788888899999999999999998888886 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.12
      AsmA_2 130 glafddikgtftienGvvttkdfklkgpaaavtvsGtvdld 170
                 g+ +++ + +ft+ n  + +++++++ p++ v+ +  +++ 
  CCG92767.1 484 GVLIKSAESDFTFSNYELFLPNLQVSRPEGTVNGTIRHNFQ 524
                 66678888889999999999999999999988888888876 PP

  == domain 4  score: 34.8 bits;  conditional E-value: 1.9e-12
      AsmA_2   6 gklrlkdeglrldnlrlrspggklsgsgswstkggaartnldlkldgvdlgallkrlglaevlgGkgslelnlswqgaplspdlssLsGdlsleledgq 104
                 g++ lk+ +l+++  ++ +++g+++g  + s   +   +  +++++  d+ +++ ++  +e   G ++ + +++++++    dl sL+Gd+++e++dg 
  CCG92767.1 610 GEIFLKGRELTIKVHHGFLFDGTIQGVYTSSLWRKTIPFHTQFAITHGDFHKAMLTIFKNEKDSGIFNFKTQFGGNLG----DLYSLKGDGKIEIHDGY 704
                 555666666666666666777777775555554444557777777777777777766666655666666666666555....5779************* PP

      AsmA_2 105 ilgvs.ll.rdlgllkltldfrdlfgeglafddikgtftienGvvttkdfklkgpaaavtvsGtvdldtetldlnvvvvp 182
                 i +++ l  ++ +     l  +d        d+ +++f+i++G + tkd+k+++   +v  sG+ d+ +++ld++++v+ 
  CCG92767.1 705 IMSIPfLGiISTS-----LSTKDTDFAMARADEASASFNIKDGCILTKDLKISSFTFSVLGSGKYDFIRDNLDMDMRVNM 779
                 ***7762232222.....23345555555669********************************************9975 PP

>> AsmA  AsmA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3      0.37   2.2e+03      57     117 ..      90     149 ..      42     192 .. 0.57
   2 !   16.1   0.0   6.5e-07    0.0039     445     496 ..     254     305 ..     224     317 .. 0.89
   3 ?   -0.6   0.0     0.071   4.2e+02     547     606 ..     690     747 ..     684     749 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.37
        AsmA  57 grsllPwptlsLsdiklaspegakkpelvsveqveisLsplpLlrkqieiasikldgpsls 117
                 ++s  P   l+++ + +  +++ ++    +v++v +s+ ++  +++q  i+s  ++ +++s
  CCG92767.1  90 KLSIDPKGNLIANRVVVFRAKDKQSI-WLQVDKVYLSVGWYSWWKGQPLIQSAIVSNATIS 149
                 55555555555555555555544443.5666666666666666666666666666666655 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 6.5e-07
        AsmA 445 sanidkvtyssllisdlkaklrlegGvlqLsrlkaglygGeleakgqldlsk 496
                 +++ +k+  ++++i+++ a+lrl+ Gvlq ++++  l +Ge+ a g++d ++
  CCG92767.1 254 QLSSKKLWFKNAPIDNIFAELRLNSGVLQVEEFTIELPRGEMSAWGEIDFKG 305
                 5777899999**************************************9654 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.071
        AsmA 547 nnLnGqlklnlnnGalsGlnlnqilvagiaaltssfgtkstpfknlavslnlkkGvltln 606
                 ++L+G  k+ +++G++  +    i+ +  +++  +f+    +  ++ +s+n+k+G + ++
  CCG92767.1 690 YSLKGDGKIEIHDGYIMSIPFLGIISTSLSTKDTDFAMA--RADEASASFNIKDGCILTK 747
                 79***************9999999998777777777655..4457888888888876655 PP

>> AsmA_1  AsmA-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       0.3   1.8e+03      92     142 ..     147     197 ..     139     198 .. 0.78
   2 ?   -1.5   0.0      0.24   1.4e+03      14     142 ..     251     304 ..     242     315 .. 0.55
   3 ?    9.4   0.1   0.00011      0.65     106     155 ..     731     780 ..     650     791 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.3
      AsmA_1  92 tfksPgfskkGykikngkinfkikkdllviekiklkgdsidiegkGiielk 142
                 t++ P   ++ ++i++ +  +k+  d + i+k++    +i+++ kG iel+
  CCG92767.1 147 TISIPLTPHNELEIHQVNASVKLLADAIEIKKASGRILNINFDLKGKIELN 197
                 556666667778888889999999999999998888888888888888886 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.24
      AsmA_1  14 lkldkkknklkleaknfsdeflnkllkkdilkkgrfelslkleeevfkgeikiqntilknlkilqnllafidtipsLltfksPgfskkGykikngkinf 112
                 + ++++++kl  +   +++ f +  l+  +l+  +f+++l   e    gei++                                              
  CCG92767.1 251 AAFQLSSKKLWFKNAPIDNIFAELRLNSGVLQVEEFTIELPRGEMSAWGEIDF---------------------------------------------- 303
                 55555555555555555555555555555555555555555555444455544.............................................. PP

      AsmA_1 113 kikkdllviekiklkgdsidiegkGiielk 142
                                              k
  CCG92767.1 304 -----------------------------K 304
                 .............................4 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00011
      AsmA_1 106 kngkinfkikkdllviekiklkgdsidiegkGiielkkkkldlklqlktl 155
                 ++++  f+ik+ ++  +++k+++ +  + g+G  ++ +++ld+++++++ 
  CCG92767.1 731 DEASASFNIKDGCILTKDLKISSFTFSVLGSGKYDFIRDNLDMDMRVNMR 780
                 578899*****************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 5640.61
//
Query:       CCG92768.1  [L=457]
Description: Glycyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-19   68.9   0.1      8e-19   67.6   0.1    1.7  1  HGTP_anticodon  Anticodon binding domain
    2.8e-13   50.2   0.0    5.6e-13   49.3   0.0    1.4  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P


Domain annotation for each model (and alignments):
>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.1   8.9e-23     8e-19       1      94 []     354     455 ..     354     455 .. 0.94

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 8.9e-23
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHH..........HTEEEEEETTTCEEEEEETT CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekele..........kgtvtvrdrdtreqervsld 85 
                     +v + pl +++ ++   ak++ + L+++ +   ++d+++ ig+++r++d++g+pf+v++++++le          k+tvtvr rd+++q rv ++
      CCG92768.1 354 KVGIFPLLKNKIDIVSKAKEVFRLLQKH-F-KSFYDESGAIGRRYRRMDEIGTPFCVTIDFETLEgvregalvgkKNTVTVRYRDSMRQDRVMIE 446
                     68999****9999*********999999.6.566679*************************************88******************* PP

                     HHHHHHHHH CS
  HGTP_anticodon  86 elveklkel 94 
                     elv++l+e+
      CCG92768.1 447 ELVDFLREK 455
                     ******985 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   6.2e-17   5.6e-13      11     176 ..     148     322 ..     138     325 .. 0.79

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 6.2e-17
                   EEE-SSSHHHHHHHHHHHEEEBGG..SSEEEEEEEEEEBTTTSTBC.TTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SC..EEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
  tRNA-synt_2b  11 yiLkPtneetfvelirdevlrskr..LPlklyqiqtkyRdEksdsr.GLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglef..raii 102
                    +L+P+  + +   +++  l s r  +P+ ++qi+  +R+E +  r  ++R reF+q + + f  +++  + +++  ++   ++e++g++    +++
    CCG92768.1 148 TYLRPETAQSIFVQFKNV-LESSRmkIPFGIAQIGKAFRNEVN-PRnFIFRSREFEQMELEYFIPPDTGFQYIEEWKEQRILWYESIGIPRahIHVR 242
                   68********99999987.7663335****************9.5559*****************************************87334455 PP

                   EEGTTSCBTTSEE.EEEEEEETTTSEEEEEEEEEEEET..HHHHHTTE...EEECTTSSEE.EEEEEEEEEEHHHHHHHHH CS
                   xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx...xxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 103 elmsaksadykdk.kefeavsesltkgieigtiqklgt..rlserlga...tvldennrek.svimicaaigveRllsail 176
                    + +++ a+y++k +++e  ++ ++++   g +   ++  ++  ++++   ++ de+ + k  ++++  + gv R+l+a+l
    CCG92768.1 243 DVPEEERAFYSKKtYDLEYDFP-FGRQELEGIAYRTDFdlKQHATFSGkslEYYDEERKCKyIPHVVEPSAGVDRTLLALL 322
                   5556566787665279999999.88876444444444435677788886667778887766369999999*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3391.55
//
Query:       CCG92769.1  [L=1192]
Description: Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-18   67.0   0.1    3.1e-18   66.0   0.1    1.6  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    6.5e-17   62.2   0.0    1.6e-16   60.9   0.0    1.7  1  POR           Pyruvate ferredoxin/flavodoxin oxidoreductase
     0.0006   19.6   0.1     0.0018   18.1   0.1    1.7  2  POR_N         Pyruvate flavodoxin/ferredoxin oxidoreductase, 
  ------ inclusion threshold ------
      0.077   12.9   2.5        7.3    6.6   0.4    2.6  2  Fer4          4Fe-4S binding domain
       0.45   10.7   5.0        3.9    7.7   5.7    2.2  2  Fer4_10       4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.1   8.7e-22   3.1e-18       1     152 [.     456     601 ..     456     602 .. 0.83

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 8.7e-22
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHH..HSTTSEEEEEEEHHHHHHT.GGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHH CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGakl..akpdrevvaivGDGgflmi.lqelatavrrnlpitvvvlnNegygmtggqqep 94 
                   d+Gc+t+     l +++ +++++   ++ mG g + ++G+    +   ++ v+++GD++f+++ + +++++v+++ +it+++l+N++++mtg+q++p
    CCG92769.1 456 DTGCYTM-----LMFEPFQNLMH--NYSGMGLGGGTGLGIDPfiK---NKQVVFMGDSTFFHSgMIAISNSVKNGQDITYIILDNRTTAMTGHQTTP 542
                   89*****.....34444455555..79999999999999997433...58999******************************************** PP

                   HTCCTTTTSBB.BS----HHHHHHHT....TSEEEEESSH.HHHHHHHHHHHHCSSSEEEEE CS
  TPP_enzyme_C  95 fggkrksgpagkdlkpvdfaklaeal....Gakgarvekadveeleealkealekkgpalie 152
                   + +k   g+    +++ d++k+++++    G++ +r+++a+ e  +  l++ l k+g+ ++ 
    CCG92769.1 543 ALDKDLLGDR---TDSQDIEKIIASVtektGVPIYRLNPASRESYKMLLERTLLKDGVKVVI 601
                   ***9999977...4444666666555444499988*****************9888988875 PP

>> POR  Pyruvate ferredoxin/flavodoxin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   4.3e-20   1.6e-16       1     176 [.     730     924 ..     730     925 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 4.3e-20
                 CTSTHHHHHHHHHHHHHHTT-EEEEEEEEESSSSSSCEEEEEEEESS.-S......SS--TTSEEEEEESSH.HHHH......HHGGGEEEEEEEEEEC CS
         POR   1 GGqGvvtagkilakaaaraGyyvqanreygseirGghsyshvrisdepiv......psievgeadllvalda.etls......ehldglkpggiiiyns 86 
                 GG G+ +++ +l +a +r Gy+vq  +  g +ir g+++s++ + ++++       p    g+adl+++ld+ et+       ++     + + +i+n+
  CCG92769.1 730 GGMGIASVTAVLVRAGHRDGYRVQFCDRNGLAIRNGSVVSQIVFYPKSEGdsppitPIGNYGDADLILGLDPlETARiidpvgRYRVASPEKTSLILNE 828
                 9*******************************************7764443444445555679*********7777677666555555666699****9 PP

                 TCGTT-CCHHHCTS.-HHHHHHH......T-EEEEE-HHHHHHHCCC.CCHHHHHHHHHHHHHHTS-H..HHHHHHHHCCS-CH.HHHHHHHHHHHHHH CS
         POR  87 eelkpdelkkakee.erelkerl......gvrvygvdatkiakeiggneraaNtvmlGalaallglpl..ealeeaikkrfpkkkeviekNlkafragy 176
                 + +++      k + ++e+ e++        + ++++++++ +e  +n+++ N +++Ga+++ + lp+  e++e a++++++k   +   N +af  g+
  CCG92769.1 829 TITQTVRSLLGKDQlSFEQFEEKilsminPNKYLKFPFSRLSEEYFDNKLYSNLMVVGAAFQSGLLPFslESIEWAVQETLGK---ASPINFEAFSVGR 924
                 988877766555430333334448999998999***************************9999988888************6...799*****98886 PP

>> POR_N  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   4.9e-07    0.0018       6      79 ..      38     111 ..      35     117 .. 0.89
   2 ?   -3.2   0.0       1.6   5.8e+03     117     146 ..     150     179 ..     138     187 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4.9e-07
                 CTEEEEEE--BTTTCCHHHHHCHCCCCCTTEE.EEEE-SSHHHHHHHHHHHHCTT-EEEEEEECCHHHHCCCCH CS
       POR_N   6 agvdviaaYPITPsseiaeelaellakgevgdvevvqmesEigaisaviGAaaaGaraaTaTSgqGllLmienl 79 
                 +gv  i++YP +P s i++ +++ +   + + ++ + + +E+ a+++  G+ +aG ra+ a  + G+  +++ l
  CCG92769.1  38 GGVHLITGYPGSPISGIFDSVESIACLLKEHGIQAILANNEALAAAMLNGSQMAGLRAVAAMKSVGFHVASDGL 111
                 678999**********99999888877776668*********************************99887766 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.6
                 S---EEEE-SSHHHHHHHHHHHHHHHHHCT CS
       POR_N 117 dtglivlasenvqeafdlalvAfnlAekvr 146
                    + +l ++++qe+ d +  +f l+ + +
  CCG92769.1 150 HLHMPLLEPSTIQEMKDWINLGFLLSRHSN 179
                 66788899**********999999998766 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.4     0.002       7.3       2      15 ..     635     648 ..     634     650 .. 0.88
   2 ?    5.6   0.1     0.004        14       4      17 ..     670     683 ..     667     683 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.002
                 EEETTTSSS-THHH CS
        Fer4   2 videekCigCGaCv 15 
                  i+++ C +C +C 
  CCG92769.1 635 FINPDVCEFCLECT 648
                 79***********6 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.004
                 ETTTSSS-THHHHH CS
        Fer4   4 deekCigCGaCvev 17 
                 d + Ci+ GaC+ v
  CCG92769.1 670 DLSWCIADGACARV 683
                 7899*******986 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.7    0.0011       3.9       2      54 ..     634     683 ..     633     687 .. 0.84
   2 ?    3.8   0.3     0.018        63       3      23 ..     668     690 ..     666     711 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0011
     Fer4_10   2 vvidddtCirCgkCvka..CPadltsvgakgeaseeeavrkkvekCtgcgaCvea 54 
                 v i++d C  C +C+ a  CP       +  e++ +++  ++++ C++ gaC+++
  CCG92769.1 634 VFINPDVCEFCLECTLAtgCPG-----LTFVETDFGKKMATDLSWCIADGACARV 683
                 579************9888**9.....8889999999999999999999999763 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.018
     Fer4_10   3 vidddtCirCgkCvk..aCPadl 23 
                   d + Ci  g+C +  aCPa  
  CCG92769.1 668 ATDLSWCIADGACARvgACPAFE 690
                 668888*******99556**943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 7818.74
//
Query:       CCG92770.1  [L=67]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.64   10.1   0.1       0.64   10.1   0.1    2.0  2  TMEMspv1-c74-12  Plectrovirus spv1-c74 ORF 12 transmembrane p


Domain annotation for each model (and alignments):
>> TMEMspv1-c74-12  Plectrovirus spv1-c74 ORF 12 transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   3.5e-05      0.64       1      20 [.       4      23 ..       4      34 .. 0.84
   2 ?   -0.9   1.6     0.095   1.7e+03      34      40 ..      59      65 ..      55      67 .] 0.52

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.5e-05
  TMEMspv1-c74-12  1 mPtWLTtiFSvvivLgiFly 20
                     m  +LT++FS+v+  + F+ 
       CCG92770.1  4 MTKYLTVLFSIVVCGTFFAT 23
                     6779********98888875 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.095
  TMEMspv1-c74-12 34 gkkkDKK 40
                     ++kk KK
       CCG92770.1 59 KEKKQKK 65
                     3344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 533.94
//
Query:       CCG92771.1  [L=375]
Description: coenzyme PQQ synthesis protein E (Coenzyme PQQ synthesis protein III) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-24   87.7   0.0    4.8e-24   85.6   0.0    1.9  2  Radical_SAM   Radical SAM superfamily
    4.5e-12   46.3   0.2      1e-11   45.2   0.2    1.6  1  SPASM         Iron-sulfur cluster-binding domain
    7.5e-06   26.1   0.0    1.6e-05   25.0   0.0    1.6  1  Fer4_14       4Fe-4S single cluster domain
    1.3e-05   25.5   0.1    3.2e-05   24.2   0.0    1.7  2  Fer4_12       4Fe-4S single cluster domain
     0.0012   18.3   0.0     0.0034   16.9   0.0    1.7  2  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0   1.3e-27   4.8e-24       6     166 ..      18     171 ..      14     172 .. 0.94
   2 ?   -0.9   0.0      0.52   1.9e+03      25      55 ..     199     228 ..     190     259 .. 0.66

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 1.3e-27
                  EESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHHHTT-S CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   6 gCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpdeeklerllelgvd 103
                   C+l+C++C+++   ++ +   +ls+ee ++ ++e+ ++ g+ +v ++ggepl+++d+ +l++ ++ l   g+   ++t gtl++++ l++++e+g+d
   CCG92771.1  18 HCPLQCPYCSNTLG-YSKWLKDELSTEEWIRVLQEA-QKLGILQVYFSGGEPLVRKDLPVLIRTAHDL---GFYSNMSTGGTLINRKLLKEIKEAGLD 110
                  6***********96.*********************.9******************************...*************************** PP

                  EEEEEEBSSSHHHHHHHHT.CTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 104 rvslgleaaddekvlklmn.rghtfeevlealeklreagikrvvdrivglpGendeeleellel 166
                   ++l+++   +e   +l+   +++fe+ lea+++++e  i+   +++v+++  n e + e++++
   CCG92771.1 111 SIQLSIQDCRPE-SADLFSgVKKSFEKKLEAVQLINEFSIP-LGINVVIHR-HNIERISEIIDF 171
                  ************.7788777*********************.788888777.888889999988 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.52
                  HHHHHHHHHHHHHHHHHH.HHTTSEEEEEESS CS
                  xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Radical_SAM  25 rgrslsveeileevkelk.aekgvkevilggg 55 
                   +r  +ve+ ++e+ ++k ++kg+  + ++  
   CCG92771.1 199 LPRRHQVEKAAKEASRAKeKYKGK--MEILFV 228
                  566778888888888886444443..333333 PP

>> SPASM  Iron-sulfur cluster-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.2   2.9e-15     1e-11       3      68 .]     244     306 ..     240     306 .. 0.78

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 2.9e-15
       SPASM   3 apsrslfInsdGdVvpCcvd.kktyveelklGnireesleeIw.nseeyqefr.kskkfplielCrnCp 68 
                 + + ++++++dG+V pC     +++++ l++ nir + le+Iw nse++++fr + + +   e+C++Cp
  CCG92771.1 244 WAKVYMTVSADGTVLPC--QsARDIRS-LSFPNIRSDNLENIWwNSEAFNKFRgTDFLP---EPCKSCP 306
                 445678***********..32355533.**************99*********654444...5699996 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   4.4e-09   1.6e-05       7      69 ..      18      78 ..      15     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4.4e-09
     Fer4_14  7 gCnlsCkgCdnketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellk 69
                 C+l+C+ C n+  +++ l+ + + e+  ++l++++k  i   ++ ++GGePL  ++ ++l++
  CCG92771.1 18 HCPLQCPYCSNTLGYSKWLKDELSTEEWIRVLQEAQKLGI--LQVYFSGGEPLVRKDLPVLIR 78
                6****************999999999888***66666655..66*********8866666654 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0     9e-09   3.2e-05      14      81 ..      18      82 ..      10     118 .. 0.80
   2 ?   -3.5   0.0       3.1   1.1e+04      38      52 ..     339     353 ..     312     356 .. 0.60

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 9e-09
     Fer4_12 14 gCnlsCkgCfnketwsfksgkeftkelleeiiedlkkesiegltllGGEPllpenaeallelvkevke 81
                 C+l+C++C n+   s   ++e ++e   +++++++k  i ++ ++GGEPl+++  ++l+   +    
  CCG92771.1 18 HCPLQCPYCSNTLGYSKWLKDELSTEEWIRVLQEAQKLGILQVYFSGGEPLVRKDLPVLI---RTAHD 82
                6****************999999999999***********************55555554...44444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.1
     Fer4_12  38 kelleeiiedlkkes 52 
                 + l+e+i+e+++ ++
  CCG92771.1 339 HHLIEKIVEEINAPE 353
                 667777777777655 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.56     2e+03      66      92 ..      39      65 ..      19      80 .. 0.72
   2 !   16.9   0.0   9.4e-07    0.0034       1      90 [.     101     183 ..     101     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.56
                  HHHHHHHHHHHHHHHHHTBSEEEEEBC CS
  AP_endonuc_2 66 eesvdalkraielaaaLGapllvlhpG 92
                  e s +++ r ++ a++LG+ ++ +  G
    CCG92771.1 39 ELSTEEWIRVLQEAQKLGILQVYFSGG 65
                  345678888888888888877766655 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 9.4e-07
                   HHHHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEE CS
  AP_endonuc_2   1 laaaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlh 90 
                   l++++eaG d+++l++ d +p s+   +    ++k +++    + +++ f+ + + ++  + ++    ++++ + i++aaaLGa  l l 
    CCG92771.1 101 LKEIKEAGLDSIQLSIQDCRPESA---DLFSGVKKSFEKKLEAVQLINEFSIPLGINVVIHRHN----IERISEIIDFAAALGAQRLELA 183
                   6899******************96...6777777777777777777787777788777778888....****************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2748.66
//
Query:       CCG92772.1  [L=90]
Description: Coenzyme PQQ synthesis protein D [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-15   55.5   0.0    6.5e-15   55.2   0.0    1.1  1  PqqD      Coenzyme PQQ synthesis protein D (PqqD)


Domain annotation for each model (and alignments):
>> PqqD  Coenzyme PQQ synthesis protein D (PqqD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   3.6e-19   6.5e-15       3      67 .]      25      87 ..      24      87 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 3.6e-19
                EEE-SS-..EEE--CHHHHHHHH-SSSS-HHHHHHHHHHHCT--HHHHHHHHHHHHHHHHCTT-- CS
        PqqD  3 vlldpetgkyisLnetgafiWklldgersveeivaalaeeydvdeeeaeadvlafldqLrekgli 67
                vll+pe+  ++ Ln+t++ i+ l+dg+r+v++iv++l++ey +d+  +e+d+ +f+  L ekg+i
  CCG92772.1 25 VLLYPEG--LLFLNQTAYKILLLCDGKRKVDDIVTELSKEYSIDRVAVEKDIWNFILTLCEKGFI 87
                899****..99*********************************999****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 671.31
//
Query:       CCG92773.1  [L=261]
Description: coenzyme PQQ synthesis protein C (Coenzyme PQQ synthesis protein I) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-54  183.8   0.0    4.1e-54  183.6   0.0    1.0  1  TENA_THI-4       TENA/THI-4/PQQC family
     0.0042   16.9   0.0     0.0057   16.5   0.0    1.3  1  Haem_oxygenas_2  Iron-containing redox enzyme


Domain annotation for each model (and alignments):
>> TENA_THI-4  TENA/THI-4/PQQC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.6   0.0   4.6e-58   4.1e-54       4     209 ..      34     242 ..      31     243 .. 0.97

  Alignments for each domain:
  == domain 1  score: 183.6 bits;  conditional E-value: 4.6e-58
                 CHHHHHHHHC..SHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHCH.....HHHHHHHHHHTT-HHHH.HC CS
  TENA_THI-4   4 lrpiwkeyin..HpFvkalakGtlpreqfqayviqdylylknfvrvlaiilskssdlevrrelesrivdhdgee.....ielhlrlaealGlsree.ls 94 
                 lr+i++  ++  HpF+  + +G+l++e +q++v+++++y+ +++ ++a+ils+++  e rr ++sri dhdg       ie++l+l++a+Glsre+ ls
  CCG92773.1  34 LRSIGNISYHdkHPFHLLMNEGKLSKEALQGWVANRFYYQEQIPIKDAAILSNCPERELRRIWISRIHDHDGFGedpggIERWLNLGKAVGLSREDlLS 132
                 67888888888************************************************************97779********************999 PP

                 TTT--HHHHHHHHHHHHHHCHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHS-TSCHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHTSHHHH.HHHHHHH CS
  TENA_THI-4  95 ktkpspatkayvrylldlarrgslaeavaallpclfvyqeiaerlkeklralegpeyyewvkeyaseefraaveeakrllerllakvsdeq.leelqei 192
                  +  +p+++ +v+++++++r ++++ a+a++l++lf+++++  r++  ++      yy+w++ ++ ++f+++ve+a++++ + l+ v + + +++lq  
  CCG92773.1 133 HRFLLPTVRYAVDAYVHFCRGQHWLIAMASSLTELFAPTIHRIRISAFPK------YYPWIDPEGLKYFEKRVEQAPKDVRFTLDLVLKRCtTQSLQLA 225
                 9999******************************************9999......******************************************* PP

                 HHHHHHHHHHHHHHHHT CS
  TENA_THI-4 193 flkalefetsfltmald 209
                 +++al+f+++ l+++ld
  CCG92773.1 226 AIEALQFKCDLLWSMLD 242
                 ***************98 PP

>> Haem_oxygenas_2  Iron-containing redox enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.4e-07    0.0057       3     134 ..      65     196 ..      63     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.4e-07
  Haem_oxygenas_2   3 flrqrapyklvfgdwlalvhsrltdrevkrallenlsEElGdgdlernHvelyrrllkalGldeeplealpel.petlalinlfeavalsrrll 95 
                      ++ +r+ y+++ +   a+++s++++re++r+ ++ +++  G g++     e + +l ka+Gl++e+l  + +l p+ + +++++ +++  +++l
       CCG92773.1  65 WVANRFYYQEQIPIKDAAILSNCPERELRRIWISRIHDHDGFGEDPG-GIERWLNLGKAVGLSREDLLSHRFLlPTVRYAVDAYVHFCRGQHWL 157
                      77777777777777779999999999999999999998888777666.5888999*************************************** PP

  Haem_oxygenas_2  96 gallGallalEllvsletlklaeelre..lgldeeapeyfd 134
                       a+++   ++El ++ + ++ + ++ +    +d+e+++yf 
       CCG92773.1 158 IAMASS--LTELFAPTIHRIRISAFPKyyPWIDPEGLKYFE 196
                      755554..569999999999999998863358888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1923.58
//
Query:       CCG92774.1  [L=298]
Description: Coenzyme PQQ synthesis protein B [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-28   99.7   0.0    1.8e-28   99.4   0.0    1.1  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.0     1e-32   1.8e-28       2     201 .]      56     265 ..      55     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 1e-32
                    EEEES--TTHHHH..HTCGG..S--S.SS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-T CS
  Lactamase_B_2   2 riLiDagpdlrqq..alral..qPve.lrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvheldw 92 
                    +iL++a+ dl  q  + ++    P+   r++  p +a++lt++++DH  gll+lre+  k++++++++++++ ++++ + +          + l+ 
     CCG92774.1  56 WILLNASIDLPTQlaL-HLElvPPGLeIRSS--PFAAIILTDGQIDHASGLLSLREG--KEIEIVCSDSTWDLISEHYPIARILSS----YVRLK- 141
                    *********9999853.33333666666666..***********************6..45****************998888887....44444. PP

                    TSEEEECSTTEEEEEEEE-EE--C..TCCE-TTTSEEEEEE.CTTEEEEEESS-S---HHHHHHHCT-SEEEEE-S-SSTTHHHH.........HH CS
  Lactamase_B_2  93 gesfelgdggleitatparhksgr..rldrnagdtlGlrie.gggkrvyyigDtgyipeeigerlggadllllditayeddemir.........hm 176
                      sf ++ g l + a++++++ ++  ++++++gd++++ ie ++g +v+y++ +  i+ +++e ++ a++l++d+t+++++e            +m
     CCG92774.1 142 RSSFPIKIGSLLFDAFELPGGPPPyaKREPRPGDVIAVSIEdESGLKVVYCPALPSISSSLEEFIQEAECLFVDGTFWSENELLLwnikekkasEM 237
                    455666555788*************999*************99**************************************988899********* PP

                    T---S...TSHHHHCTTSSSSEEEEESB CS
  Lactamase_B_2 177 gHltp...eeaveaaadlgakrlvliHi 201
                    gH+++   ++ + ++  l++ ++++iHi
     CCG92774.1 238 GHIPVggeNGSLSWLSTLQIPKKIYIHI 265
                    *****99999*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2485.14
//
Query:       CCG92775.1  [L=410]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-15   56.1   0.0    1.1e-08   34.8   0.0    4.2  4  Lactonase      Lactonase, 7-bladed beta-propeller
    3.1e-10   39.1   0.0    0.00056   18.5   0.0    2.6  3  Cytochrom_D1   Cytochrome D1 heme domain
    1.4e-06   28.5   0.0        2.4    8.5   0.0    4.6  4  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    0.00021   20.8   0.0      0.043   13.2   0.0    3.1  3  Glu_cyclase_2  Glutamine cyclotransferase
    0.00056   19.8   0.1      0.058   13.3   0.1    3.5  3  PD40           WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
      0.017   15.0   0.1       0.13   12.2   0.1    2.3  1  Phytase-like   Esterase-like activity of phytase
      0.021   13.9   0.0       0.19   10.7   0.0    2.2  2  Coatomer_WDAD  Coatomer WD associated region
      0.039   14.1   0.6        4.2    7.6   0.0    3.6  3  Arylesterase   Arylesterase
      0.096   12.5   0.0        3.8    7.4   0.0    2.5  2  TruB_C         tRNA Pseudouridine synthase II, C terminal


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0057        11     286     328 ..     124     164 ..      92     168 .. 0.72
   2 !    4.4   0.0    0.0096        19      26      58 ..     162     192 ..     156     213 .. 0.70
   3 !   34.8   0.0   5.3e-12   1.1e-08     236     321 ..     214     297 ..     199     315 .. 0.87
   4 !    7.6   0.0     0.001         2     278     322 ..     338     381 ..     312     390 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0057
                 EE-SSS.--EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE CS
   Lactonase 286 vstegkfPRdfaldpsgklllvanqksdnvtvferdaetGkLt 328
                 ++  g + R + +d++gk l+va+++++++ ++  da++Gk++
  CCG92775.1 124 IALPGSMLRGIGIDKEGKTLFVADKSTQSLLIL--DANNGKIK 164
                 445566668999999999999999999888775..55566666 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0096
                 -EEEEEEEEESS---SEEE-TTSSEEEEEET.S CS
   Lactonase  26 kltplelvaelenPsyLalspdgktlYavnetg 58 
                 k++++     ++nP++L l+p++k+l+++ e +
  CCG92775.1 162 KIKKAI--RLGQNPEFLRLHPERKFLFVSYEPD 192
                 444444..3589***************998866 PP

  == domain 3  score: 34.8 bits;  conditional E-value: 5.3e-12
                 S-TSS-S---EEEEEE-TTSSEEEEEETSSTEEEEEEE-TTT--EEEEEEEE-SSS.--EEEE-TTSSEEEEEETTTTEEEEEEEE CS
   Lactonase 236 lpegftgknsaaeIrlspdgkflyvSnRgadsiavfavdeadgtltlveevstegkfPRdfaldpsgklllvanqksdnvtvferd 321
                 + ++f+g n+  +I  s+dg+ l v+n g++si ++++ e   +++ ++ +++ g+ PR ++  p++++ +v  ++s+++++f  +
  CCG92775.1 214 IDNEFSGGNETEAIEFSQDGSKLLVANEGENSIGLYDI-ETRREIRRIDLQKI-GTRPRGLKRAPQEEIYAVTFENSNTLALFDKN 297
                 44589999******************************.7779**********.555*************************9755 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.001
                 --EEEEEEEE-SSS.--EEEE-TTSSEEEEEETTTTEEEEEEEET CS
   Lactonase 278 gtltlveevstegkfPRdfaldpsgklllvanqksdnvtvferda 322
                 ++l+l  e++++ +   +f+++p+gk +lva  +sd + +f  d+
  CCG92775.1 338 QNLKLLAEAPVGLR-SWHFTFSPDGKKILVASGRSDALYIFDADN 381
                 56788888888444.779**********************99885 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0061        12      50     114 ..     102     166 ..      89     168 .. 0.82
   2 !   18.5   0.0   2.8e-07   0.00056     243     358 ..     146     264 ..     132     271 .. 0.85
   3 !   17.5   0.0   5.9e-07    0.0012       5     119 ..     279     392 ..     275     397 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0061
                   EEEEETTSEEEEEESSSSSEEEEEE-.SSEEEEEEE--TTSEEEEEEEETTEEEEEETTT--EEEE CS
  Cytochrom_D1  50 vyvigRDgkvtliDLwakeivaevki.GlnarsvavSqddryvivgnYlPgqlvildaetLelvkv 114
                   +y ++ +g++ +iD+ ++e++ ++ + G+  r++ + ++++ + v+      l ilda++ +  k 
    CCG92775.1 102 AY-VSCEGGIAIIDIEKNEKLMTIALpGSMLRGIGIDKEGKTLFVADKSTQSLLILDANNGKIKKA 166
                   45.477899*******999888887659999***************99999999999998776665 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 2.8e-07
                   EEEE--TTT.-TTTBTSEEEEEE-SSS---EE--TT-SEEEEE-TT-SS........HT-EEEEETTBT-EEE-HHHHHT--EEEEEE-TTSSEEEE CS
  Cytochrom_D1 243 sligtdsesvldeqaWkvvkeikveGqglFvkthpdskqlwvdaflnpd........ndsvaviDkktlekvltlaesaglkvvhvEfnkdGdevwl 331
                   +  +t+s  +ld+++ k+ k+i+   ++ F++ hp+ k l+v    +pd          ++a iD ++  + ++   + +     +Ef++dG ++++
    CCG92775.1 146 ADKSTQSLLILDANNGKIKKAIRLGQNPEFLRLHPERKFLFVS--YEPDllkssspiGAKIAQIDIQKERIDNEFSGGNE--TEAIEFSQDGSKLLV 238
                   6668888899*************98889**************9..88888888778778999999999988888876666..7889*******9987 PP

                   EEE--SSEEEEEETTTTEEEEEEE--S CS
  Cytochrom_D1 332 SvwdgkdalvvyDdktlklkkviklvt 358
                   +  +g++ + +yD +t++++++i l++
    CCG92775.1 239 A-NEGENSIGLYDIETRREIRRIDLQK 264
                   6.56777****************9765 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 5.9e-07
                   GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEEEEEEE--TTSEEEEEEEETTEE CS
  Cytochrom_D1   5 nlfvvverdagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGlnarsvavSqddryvivgnYlPgql 101
                   ++++v+  +   +al d  +++ l++  t     +     s +R+++++ RD k++++D  + + +ae  +Gl +     S d++ ++v++     l
    CCG92775.1 279 EIYAVTFENSNTLALFDK-NFSLLKTTTTASGPYGVAFDPSGKRLLLLAFRDRKLQVFDSQNLKLLAEAPVGLRSWHFTFSPDGKKILVASGRSDAL 374
                   667777777777777774.455555555555555555555668999*************************************************** PP

                   EEEETTT--EEEEEE--E CS
  Cytochrom_D1 102 vildaetLelvkvisarg 119
                    i+da++ + +++i   +
    CCG92775.1 375 YIFDADNYKELAKIEGIK 392
                   *****9999888876655 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0015         3      27      81 ..     119     172 ..     101     183 .. 0.75
   2 !    8.5   0.0    0.0012       2.4      36      79 ..     219     263 ..     201     288 .. 0.82
   3 ?    4.2   0.0     0.026        52      43      78 ..     312     348 ..     272     355 .. 0.80
   4 ?    1.1   0.0      0.25     5e+02      44      76 ..     355     388 ..     350     393 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0015
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavaysdg.evrlldaesgkvvhslsvkse 81 
                  ++++t+  + ++s  r++   ++gk L va + + ++ +lda++gk+ ++++ +++
   CCG92775.1 119 EKLMTI--ALPGSMLRGIGIDKEGKTLFVADKSTqSLLILDANNGKIKKAIRLGQN 172
                  455555..5678888999999*********9887478999*******999988876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0012
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLava.ysdgevrlldaesgkvvhslsvk 79 
                  + ++e +++++++dg+ L va   ++++ l+d+e+ + ++ ++ +
   CCG92775.1 219 SGGNETEAIEFSQDGSKLLVAnEGENSIGLYDIETRREIRRIDLQ 263
                  45788899*******77666615689*********9999988776 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.026
  ANAPC4_WD40  43 sLaWkpdgk.lLavaysdgevrlldaesgkvvhslsv 78 
                  ++a+ p+gk lL  a+ d +++++d+++ k++ + +v
   CCG92775.1 312 GVAFDPSGKrLLLLAFRDRKLQVFDSQNLKLLAEAPV 348
                  678999997367899*************999988766 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.25
  ANAPC4_WD40  44 LaWkpdgklLavay.sdgevrlldaesgkvvhsl 76 
                  + ++pdgk + va     ++ ++da + k + ++
   CCG92775.1 355 FTFSPDGKKILVASgRSDALYIFDADNYKELAKI 388
                  6789999866666515568999999998887765 PP

>> Glu_cyclase_2  Glutamine cyclotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.083   1.7e+02     125     161 ..     131     168 ..     100     177 .. 0.61
   2 ?    1.9   0.0     0.064   1.3e+02      60     122 ..     241     305 ..     216     318 .. 0.58
   3 !   13.2   0.0   2.2e-05     0.043      93     161 ..     318     389 ..     311     392 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.083
  Glu_cyclase_2 125 geGWGlttdgkrlvmsdGs.stltfldpktfaetksve 161
                      G G+ ++gk+l+++d s ++l +ld+++ + +k ++
     CCG92775.1 131 LRGIGIDKEGKTLFVADKStQSLLILDANNGKIKKAIR 168
                    34666667777776666431456667766666666665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.064
  Glu_cyclase_2  60 egksslrkvdletgkvlkeaeldeel.FgEGitvl.gdklyqltwkegvafvydaetleeigrvs 122
                    eg+ s+  +d+et + +++ +l++      G+  + ++++y++t++++  +++  ++++ +++++
     CCG92775.1 241 EGENSIGLYDIETRREIRRIDLQKIGtRPRGLKRApQEEIYAVTFENSNTLALFDKNFSLLKTTT 305
                    44444555555555555555554432234455443245677777776666666666666666655 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 2.2e-05
  Glu_cyclase_2  93 lgdklyqltwkegvafvydaetleeigrvsyegeGWGltt..dgkrlvmsdG.sstltfldpktfaetksve 161
                     g++l+ l ++++++ v+d ++l+ + + ++    W  t   dgk+++++ G s++l+++d+++++e  ++e
     CCG92775.1 318 SGKRLLLLAFRDRKLQVFDSQNLKLLAEAPVGLRSWHFTFspDGKKILVASGrSDALYIFDADNYKELAKIE 389
                    57899***************************99**9995336777655555399**********9988875 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.43   8.5e+02      14      23 ..     227     236 ..     218     239 .. 0.74
   2 ?    0.9   0.0      0.24   4.9e+02      14      32 ..     313     330 ..     308     335 .. 0.74
   3 !   13.3   0.1   2.9e-05     0.058      14      30 ..     355     371 ..     354     377 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.43
                 EEE-TTSSEE CS
        PD40  14 PsfSPDGkrl 23 
                 + fS DG++l
  CCG92775.1 227 IEFSQDGSKL 236
                 559****998 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.24
                 EEE-TTSSEEEEEEECT.T CS
        PD40  14 PsfSPDGkrlaFsSdRgsG 32 
                  +f+P Gkrl    +R+  
  CCG92775.1 313 VAFDPSGKRLLLLAFRD-R 330
                 58*******97666665.5 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 2.9e-05
                 EEE-TTSSEEEEEEECT CS
        PD40  14 PsfSPDGkrlaFsSdRg 30 
                 ++fSPDGk++  +S R+
  CCG92775.1 355 FTFSPDGKKILVASGRS 371
                 69**********99997 PP

>> Phytase-like  Esterase-like activity of phytase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   6.6e-05      0.13      90     145 ..     152     243 ..     131     391 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.6e-05
  Phytase-like  90 filefdad.Gkllrelpl...paellpaaspd................................aglrrnrGfEglalspdgrkLyaalEsp 145
                   ++l  da+ Gk+++ ++l   p+ l+  ++++                                ++ +     E++ +s+dg+kL++a E++
    CCG92775.1 152 SLLILDANnGKIKKAIRLgqnPEFLRLHPERKflfvsyepdllkssspigakiaqidiqkeridNEFSGGNETEAIEFSQDGSKLLVANEGE 243
                   44444444444444444333333333333333444444444444444444444444444444444555555555555555555555555554 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.6e-05      0.19     117     147 ..     233     265 ..     203     267 .. 0.71
   2 ?    0.3   0.0      0.14   2.7e+02      87     175 ..     287     380 ..     273     395 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.6e-05
                    XXXXXXXXXX...XXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 117 GalLgvkseg..svsfYDweqgklvrridvkkv 147
                    G+ L+v +eg  s+ +YD+e+++ +rrid++k+
     CCG92775.1 233 GSKLLVANEGenSIGLYDIETRREIRRIDLQKI 265
                    5545554443349****************9986 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.14
                    XXXXXXX..XXXXXXXXXXXXXXXXXXXXXX...XX..XXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD  87 ssksvkif.knfkekktksikleyqvdkifg...Ga..lLgvksegsvsfYDweqgklvrridvkk.vknVvwsddgelvalvskdtvyilsynle 175
                    +s+++ +f knf+  k  + ++      +     G   lL++  +  + ++D ++ kl+++  v     +   s+dg+ + ++s ++  ++ ++ +
     CCG92775.1 287 NSNTLALFdKNFSLLK--TTTTASGPYGVAFdpsGKrlLLLAFRDRKLQVFDSQNLKLLAEAPVGLrSWHFTFSPDGKKILVASGRSDALYIFDAD 380
                    3666666666665444..333333333333335532223333333448888888888888877663235666777777666665444444444444 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.11   2.3e+02      11      60 ..      59     111 ..      50     125 .. 0.72
   2 ?    7.6   0.0    0.0021       4.2      56      81 ..     131     156 ..     115     161 .. 0.82
   3 ?   -0.7   0.0      0.87   1.7e+03      60      81 ..     356     377 ..     335     398 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.11
  Arylesterase  11 fyatndhy..FgdnfllllemslqlawtavvYyspsevkvv.asglssanGIn 60 
                   f+  + ++  F++  + l+ + l+ + +a + +s+   +v   + +s   GI 
    CCG92775.1  59 FFLLKFKIlsFSTLLIHLWVFFLVIIFSALICFSSVRASVHpLAYVSCEGGIA 111
                   66655543339999999*****************9888776234445555555 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0021
  Arylesterase  56 anGInidadkkyiyvadilresihvm 81 
                     GI+id + k ++vad   +s+ ++
    CCG92775.1 131 LRGIGIDKEGKTLFVADKSTQSLLIL 156
                   57***************988887665 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.87
  Arylesterase  60 nidadkkyiyvadilresihvm 81 
                   ++++d k i va+   + ++++
    CCG92775.1 356 TFSPDGKKILVASGRSDALYIF 377
                   5678888888888777777765 PP

>> TruB_C  tRNA Pseudouridine synthase II, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.067   1.3e+02      19      44 ..     271     296 ..     270     303 .. 0.88
   2 ?    7.4   0.0    0.0019       3.8      23      49 ..     305     332 ..     299     334 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.067
                 --B-----S-EEEE-TTS-EEEEEEE CS
      TruB_C  19 rLeaagikgvvAaiaPdGrliALlee 44 
                  L++a+ ++++A++ +    +AL++ 
  CCG92775.1 271 GLKRAPQEEIYAVTFENSNTLALFDK 296
                 58999************999999865 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0019
                 ----S-EE.EE-TTS-EEEEEEEETTEE CS
      TruB_C  23 agikgvvA.aiaPdGrliALleerggra 49 
                 ++++g+++ a++P+G+ + Ll++r++++
  CCG92775.1 305 TTASGPYGvAFDPSGKRLLLLAFRDRKL 332
                 4889999966**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 2795.78
//
Query:       CCG92776.1  [L=152]
Description: NAD-dependent formate dehydrogenase gamma subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-41  140.9   0.0    2.9e-41  140.7   0.0    1.0  1  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
  ------ inclusion threshold ------
        0.2   11.7   0.2       0.48   10.5   0.0    1.7  2  UPF0240          Uncharacterised protein family (UPF0240)


Domain annotation for each model (and alignments):
>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   0.0   3.3e-45   2.9e-41       6     144 ..      13     151 ..       8     152 .] 0.97

  Alignments for each domain:
  == domain 1  score: 140.7 bits;  conditional E-value: 3.3e-45
                      TTS--GGGGHHHHHHHHHHHHSS--HHHHHHHHHHHTS-HHHHHHHHTTSSSS-SS---SEEEEEE-SHHHHTTTHHHHHHHHHHHHT--TT-B CS
  2Fe-2S_thioredx   6 akypekrsaliplLklvQeeegwlpeealeevaellgvppaevyevatFYsmfnlkpvgkyviqvCtttpCalrgseeilealekklgikaget 99 
                      a y +k + lip+ ++vQee g++p+e l ++a+  ++++aevy+v+tFY+ f++kp gk +i++C+  +C+++g ++++e+ +++l+i++g t
       CCG92776.1  13 AFYSTKPNGLIPFYHKVQEEIGYIPKEFLPQIASSFNLSQAEVYGVLTFYADFRTKPPGKNIIKICRAEACQANGCHRVIEKAKETLKIDFGGT 106
                      66889999************************************************************************************** PP

                      -TTSSEEEEEES--S-GGGSSEEEESSSSEEES-HHHHHHHHHHH CS
  2Fe-2S_thioredx 100 tadgkftleeveClGaCanaPvvqindevyedltpekveeilekl 144
                      tadgk+tl  + C+G+Can+P v +n+++y+++++ k+e+++++l
       CCG92776.1 107 TADGKVTLLPTFCFGNCANGPSVALNGKLYGRVDARKIENLIHSL 151
                      *****************************************9875 PP

>> UPF0240  Uncharacterised protein family (UPF0240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.4e-05      0.48     141     171 ..      43      73 ..      37      76 .. 0.91
   2 ?   -2.0   0.0      0.36   3.2e+03      18      28 ..      88      98 ..      85     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.4e-05
     UPF0240 141 kiaqeYkLeekdvksllkyFkpFevkiPekk 171
                 +ia++++L++ +v  +l+++  F  k P k+
  CCG92776.1  43 QIASSFNLSQAEVYGVLTFYADFRTKPPGKN 73 
                 79**********************9988775 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.36
     UPF0240 18 ahreiskeKpk 28
                 hr+i+k+K +
  CCG92776.1 88 CHRVIEKAKET 98
                699****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1053.97
//
Query:       CCG92777.1  [L=522]
Description: Formate dehydrogenase beta subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-45  152.5   0.0    1.7e-44  151.3   0.0    1.6  1  Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subu
    6.2e-32  109.5   0.6    9.7e-32  108.9   0.6    1.3  1  NADH_4Fe-4S   NADH-ubiquinone oxidoreductase-F iron-sulfur bi
    1.9e-07   30.8   0.3    4.1e-07   29.8   0.3    1.6  1  SLBB          SLBB domain


Domain annotation for each model (and alignments):
>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.3   0.0   2.9e-48   1.7e-44       1     151 [.     145     316 ..     145     317 .. 0.95

  Alignments for each domain:
  == domain 1  score: 151.3 bits;  conditional E-value: 2.9e-48
  Complex1_51K   1 vkeagivGrGGagfPthvKlkakakkkk...kylivNaaEcEPgltkDrllmreepheileGlkiaaealgaekgvigvrdekpeaiealekalaea 94 
                   ++++g++GrGGa+fPt++K+k+++ + +   ky+++Na+E++ g+++Dr++m+ +p  ++eG++ia  a+ga+kg+i++r+e+p a e l+ka+a  
    CCG92777.1 145 ITKSGLRGRGGAAFPTGIKWKTTKGA-IasqKYIVCNADEGDSGTFSDRMVMEGDPFLLIEGMAIAGFAVGADKGYIYLRSEYPLAHEVLNKAIAVC 240
                   689********************984.4488****************************************************************** PP

  Complex1_51K  95 kaagl...........ldievvklagkYpaGeekaLiesltgr.evprgkpp..advgv.....vvnNveTlaavy 151
                   +++g+           +d+ev  +ag+Y++Gee+aL+esl+g+ ++ r +pp  a +g+     v+nNv Tla+v+
    CCG92777.1 241 RSQGIlgsplfgssfsFDLEVFLGAGAYVCGEETALLESLEGKrGMVRPRPPlpALKGLwgkptVINNVITLASVP 316
                   ****9***************************************777776666599999***************97 PP

>> NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.6   1.6e-35   9.7e-32       2      83 ..     428     509 ..     427     511 .. 0.98

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 1.6e-35
                  HHHHHHHHHHHH--S--HHHHIIIIHHHHHHHHHTBT---HHHHHHHHHHHHHHSS--SSTHHHHHHHHHHHHHHHHHHHHH CS
  NADH_4Fe-4S   2 varrllefyaaesCGkCtpCreGtkrllelleriaagegteedldlleelaetikgtslCalgdsaanpvlsalrkFreefe 83 
                  +a++++ef+a+esCGkCtpCr+G++r+ el+e+i  g+g++++l+ll +l++t+ ++slC+lg++++ pvlsalr+F+e+f 
   CCG92777.1 428 MAHYAMEFCAEESCGKCTPCRIGSTRGMELMEKILMGKGSRKELELLFDLCDTMLHASLCGLGGMTPFPVLSALRHFPEDFG 509
                  899*****************************************************************************97 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.3   6.8e-11   4.1e-07       2      54 ..     340     386 ..     339     390 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 6.8e-11
                 EEEESSBSS-EEEEEETT-BHHHHHHTTT-SBSS.........-E.EEE-SSSS CS
        SLBB   2 VtVtGeVkrPgnyevpigttlsdlieqaGGltddadlksvnLarl.avipgGpm 54 
                 V+++G+ k Pg +evp g++l+dl++  GG+t+ ++        l a+ +gGp 
  CCG92777.1 340 VQLSGNLKYPGLVEVPFGISLRDLVYGFGGGTRSGR-------PLkAIQIGGPL 386
                 899*********************************.......99999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3626.21
//
Query:       CCG92778.1  [L=990]
Description: NAD-dependent formate dehydrogenase, molybdenum containing, alpha subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-72  243.7   0.0    4.8e-72  243.3   0.0    1.2  1  Molybdopterin    Molybdopterin oxidoreductase
    1.5e-27   95.8   0.0    3.1e-27   94.8   0.0    1.5  1  Molydop_binding  Molydopterin dinucleotide binding domain
    2.9e-21   75.3   0.0    7.4e-21   74.0   0.0    1.8  1  Fer2_4           2Fe-2S iron-sulfur cluster binding domain
    6.7e-16   58.0   0.8    2.5e-15   56.2   0.8    2.1  1  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain
    7.1e-15   54.3   0.2    7.1e-15   54.3   0.2    2.7  2  NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur
    1.9e-10   41.2   5.5    5.9e-07   30.0   6.1    3.9  3  Fer4_7           4Fe-4S dicluster domain
    9.9e-07   28.6  10.4    7.8e-05   22.6   1.4    4.2  3  Fer4_6           4Fe-4S binding domain
    1.3e-06   28.4   5.7    1.3e-06   28.4   5.7    2.9  2  Fer4_21          4Fe-4S dicluster domain
    2.5e-06   27.3   0.1    2.5e-06   27.3   0.1    2.2  2  Fer2             2Fe-2S iron-sulfur cluster binding domain
    7.6e-06   25.5   2.1    7.6e-06   25.5   2.1    3.7  3  Fer4             4Fe-4S binding domain
    4.4e-05   23.6   7.6    4.4e-05   23.6   7.6    3.6  3  Fer4_9           4Fe-4S dicluster domain
     0.0015   18.5  18.5     0.0042   17.1   2.7    3.9  3  Fer4_2           4Fe-4S binding domain
     0.0029   17.7  11.5     0.0029   17.7  11.5    3.1  2  Fer4_10          4Fe-4S dicluster domain
      0.007   17.1   6.7       0.24   12.2   0.4    2.8  2  Fer4_15          4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.021   15.7   6.9      0.021   15.7   6.9    3.4  2  Fer4_16          4Fe-4S double cluster binding domain
       0.03   14.5  13.8       0.52   10.5   4.7    2.7  2  Fer4_18          4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.3   0.0   4.2e-75   4.8e-72       4     431 ..     356     784 ..     353     785 .. 0.86

  Alignments for each domain:
  == domain 1  score: 243.3 bits;  conditional E-value: 4.2e-75
                    S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHH....CHHCCC CS
  Molybdopterin   4 yPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppasaq....qtigsd 95 
                    +Pm+R  ++ e+ +++vsW+eA +++a+++k++ +kyg +++  +ss++   +e+ ++ +kl+++++    +++d++a+++++ +      ++g++
     CCG92778.1 356 KPMLR--KKIEDPWKEVSWEEAIAYVASEFKRITDKYGRNSIGAVSSSRC-TNEEDYLVQKLVRAVFH--NNNIDTCARVCHSPTGyglkAAFGTS 446
                    8****..4558****************************99995555555.5999999**********..69*********977655554444443 PP

                    CCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB-H......CGGGCSEEEEEHTTTHHHHHHHHHHHHHHCCC CS
  Molybdopterin  96 srsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpryae......llkfadewlaikpgtdaalalamghvilqelk 185
                         + +np+ +++ sd+i+++G+N+   +p+  +++ +++++ +a++iv +pr+ +      +  +ad +l +kpgt +al++a++++il+e++
     CCG92778.1 447 -----AGTNPFDSIQFSDVIFVIGANPTDGHPVFGSQMKRRLRQ-GARLIVADPRKIDlvktphI--RADYHLQLKPGTNVALLNAIAYTILEEGL 534
                    .....4577888**********************5555555555.7************8877544..89*************************** PP

                    CTCHHHHHHEECHHHCCCCCCCEECCS...HHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHHHHHHHHCTHCSSTTCEEEE CS
  Molybdopterin 186 vdkeflrkytygkeetdmpllvtleee...tgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyravinLallvgnvgqpgGgwah 278
                    +d +f++  +      ++   v ++e+   + ++ + v +  ++ a+++++t g+++i +G g++++++g++++ a++nLa+l+gnvg++g+g++ 
     CCG92778.1 535 EDRKFIEEKCDKVSFEKWMQFVRKPENapeAVQEITGVPAETIRAAARLYATGGNAAIYYGLGVTEHSQGTTAVLAIANLAMLTGNVGKEGAGVNP 630
                    *****88766544444444444444444556666666666666778888899999***************************************** PP

                    ESSCTTHHHCHHHHTCCTTCCCCCCCTT.HHHHHCCCTTTCSTS..S--ECGGCHHHHHHTTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEE CS
  Molybdopterin 279 lnGqlilagaaekvgalpvllsvkslke.ekikfaaeqpgnlgn..fprnlfversnllkssgkkvlyllgnnpevdhadenevekalekldlvvv 371
                    l+Gq++++g  +++g +p++ s ++ ++  ++++  e+  n+++   p+ +++ + + +  +++k +y+ g++  ++++d n+v++al++++lvv 
     CCG92778.1 631 LRGQNNVQG-SCDMGSFPHEFSGYRHVSdFETRMLFEGAWNVPLdpEPGLRITNMLTEAVYGNFKGIYVHGEDLTQSDPDSNHVIQALKSMELVVL 725
                    *********.***************999866666666666666611567788888888888*********************************** PP

                    EESCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEEEEESSS-STT-BEHHHHHHHHHH CS
  Molybdopterin 372 ldgrltstalyaDiiLPaatwyEkedlytndegrfqhlkqavsppgeaksdwkIlkaLak 431
                     d++l++  +y+++ LP+++++Ek++++tn+e+r+q+ +q+++p+   k++w++++++a+
     CCG92778.1 726 HDIFLNEMSKYCHVFLPGCSFLEKDGTFTNAERRIQRVRQVMPPRC-GKQEWEVIQEIAQ 784
                    *****************************************99987.5999*******96 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   0.0   2.7e-30   3.1e-27       1     110 [.     868     972 ..     868     973 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.8 bits;  conditional E-value: 2.7e-30
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC.....S-GHCTS CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpepevveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwweagekggnaNalt 94 
                      l+L+tgr l++++ +t+tr++++   ++++ +ei+p dA+++GikdG+lVev+sr+Gs ++r k+terv+pG+v+++f+++e     + aN +t
       CCG92778.1 868 LILTTGRILHHYNVGTQTRRTQNVIWFKEDILEIHPSDAEERGIKDGELVEVTSRKGSGTFRCKITERVQPGTVYATFHFPE-----SRANIVT 956
                      79********************************************************************************.....******* PP

                      --SCSTTT--CSTT-E CS
  Molydop_binding  95 ddatdplsgtpefksv 110
                       +  d  +  pe+k++
       CCG92778.1 957 TEISDWATNCPEYKVT 972
                      **************87 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   6.6e-24   7.4e-21       2      79 ..      77     151 ..      76     154 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 6.6e-24
      Fer2_4   2 rpvtltfDGkevtvpeGdtvasAllangvdvprsckygrprgelcaggeCrnClVevegepnv.racstpvedGlkvet 79 
                 ++vtlt+DG ev+vpeG+++++A++ +g+ +p++c++    + l+++g+Cr ClVe+eg++   ++c+t ve+G+kv+t
  CCG92778.1  77 KAVTLTIDGIEVSVPEGTSLLRAAALHGIMIPKLCAT----ESLEPFGSCRLCLVEIEGKRGYpASCTTLVEQGMKVKT 151
                 579**********************************....9*****************999989************98 PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.8   2.2e-18   2.5e-15       2      52 ..     297     347 ..     296     350 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 2.2e-18
                     EEEEEE-SSBTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHTCHHC CS
  Molybdop_Fe4S4   2 kvvktaCpyCgvgCglevhvkdgkivkvegdpdhpvnegrlCvKGrtller 52 
                     k++ t+C+yCgvgC++e++++++++ ++ +++++ +n+g+ CvKGr+++ +
      CCG92778.1 297 KSTITTCAYCGVGCSFEAQTQGNEVIRMVPYKNGHANHGHSCVKGRFAWTY 347
                     7889*******************************************9987 PP

>> NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.2   6.3e-18   7.1e-15       1      40 []     160     199 ..     160     199 .. 0.97
   2 ?   -2.7   0.3         4   4.5e+03      10      16 ..     332     338 ..     332     339 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 6.3e-18
  NADH-G_4Fe-4S_3   1 RktilellLanHpldCltCdknGnCeLQdlayelgveesr 40 
                      R++++el++++HpldCl C+  G+CeLQd+a  +g +++r
       CCG92778.1 160 RRNVMELYISDHPLDCLMCPVDGDCELQDMAGAVGLRDVR 199
                      9**********************************99986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4
  NADH-G_4Fe-4S_3  10 anHpldC 16 
                      anH + C
       CCG92778.1 332 ANHGHSC 338
                      7****** PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       9.7   1.1e+04      34      42 ..     171     179 ..     147     186 .. 0.66
   2 !   30.0   6.1   5.3e-10   5.9e-07       1      52 []     225     283 ..     209     283 .. 0.81
   3 ?    5.7   0.0      0.02        23       4      48 ..     302     431 ..     301     436 .. 0.47

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 9.7
      Fer4_7  34 dpekClgCg 42 
                 +p +Cl C 
  CCG92778.1 171 HPLDCLMCP 179
                 567888884 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 5.3e-10
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenekgt.......ekveidpekClgCgaCvavCPtga 52 
                 +Ci C +Cv+aC     +l   ++++g+       ++ e+ +++C++CgaCv +CPt a
  CCG92778.1 225 KCIVCFRCVRACDEIQGTLALTARHRGFdsvitpgPTHEFLSSECVSCGACVMACPTAA 283
                 7***********95555555455577773333433666999***************986 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.02
      Fer4_7   4 gCgaCvaaC.......................................................pvkaieldeeenek..............gtekvei 33 
                  C +C + C                                                       p+k ++++e+   +              ++   ++
  CCG92778.1 302 TCAYCGVGCsfeaqtqgnevirmvpyknghanhghscvkgrfawtyalsperplkpmlrkkiedPWKEVSWEEAI--AyvasefkritdkygRNSIGAV 398
                 6********666666655555555555555555555555555555555555555555555555533333333321..0112222222222222233366 PP

      Fer4_7  34 dpekClg..................CgaCvavC 48 
                 ++++C++                   + C++vC
  CCG92778.1 399 SSSRCTNeedylvqklvravfhnnnIDTCARVC 431
                 667777533333333333333333346677777 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   1.4     7e-08   7.8e-05       3      21 ..     220     238 ..     218     243 .. 0.92
   2 !   20.0   2.0   4.5e-07   0.00051       9      24 .]     269     284 ..     263     284 .. 0.91
   3 ?   -1.2   0.2       2.3   2.5e+03      14      20 ..     426     432 ..     425     436 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 7e-08
      Fer4_6   3 eidpdkCigCgdCvrvCPe 21 
                 ++dp+kCi C +Cvr+C e
  CCG92778.1 220 TFDPSKCIVCFRCVRACDE 238
                 8****************65 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 4.5e-07
      Fer4_6   9 CigCgdCvrvCPegai 24 
                 C++Cg+Cv++CP++a+
  CCG92778.1 269 CVSCGACVMACPTAAL 284
                 *************996 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.3
      Fer4_6  14 dCvrvCP 20 
                  C+rvC 
  CCG92778.1 426 TCARVCH 432
                 5*****5 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   5.7   1.2e-09   1.3e-06       3      57 ..     221     285 ..     220     287 .. 0.79
   2 ?   -1.6   0.7       2.8   3.1e+03       7      30 ..     302     326 ..     297     340 .. 0.53

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.2e-09
     Fer4_21   3 idedkCigCgkCliaCed.tshqai.........eidaktvlkvvedeCvGCnlCssvCPvedci 57 
                 +d++kCi C +C+ aC++ +++ a+          i++  +++ +++eCv C  C+  CP+   i
  CCG92778.1 221 FDPSKCIVCFRCVRACDEiQGTLALtarhrgfdsVITPGPTHEFLSSECVSCGACVMACPTAALI 285
                 5899************9823444457777666655666678899****************97666 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.8
     Fer4_21   7 kCigCgk.CliaCedtshqaieida 30 
                 +C  Cg  C    ++++ + i++ +
  CCG92778.1 302 TCAYCGVgCSFEAQTQGNEVIRMVP 326
                 4555543355555566666676654 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   2.3e-09   2.5e-06       3      77 ..      83     143 ..      81     150 .. 0.77
   2 ?   -3.5   1.8       9.5   1.1e+04      39      47 ..     271     279 ..     266     304 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 2.3e-09
                 TTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSS......SSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGGGSEE CS
        Fer2   3 idgkevevevadgettlldaaeenggidipysCgg......ggCgtClvevlegevqsdetelegeeldegklrlaCqtiv 77 
                 idg   ev+v++g++ ll aa   +gi ip +C        g+C+ Clve++            g++   g+  ++C+t+v
  CCG92778.1  83 IDGI--EVSVPEGTS-LLRAAA-LHGIMIPKLCATeslepfGSCRLCLVEIE------------GKR---GYP-ASCTTLV 143
                 6565..666667777.887776.459**************999******987............444...344.7777766 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 9.5
                 SSSTTEEEE CS
        Fer2  39 gCgtClvev 47 
                 +Cg+C+  +
  CCG92778.1 271 SCGACVMAC 279
                 499999754 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   2.0   0.00022      0.25       2      18 ..     220     236 ..     219     238 .. 0.94
   2 !   25.5   2.1   6.7e-09   7.6e-06       6      23 ..     267     284 ..     263     285 .. 0.91
   3 ?   -2.8   0.6         6   6.7e+03      13      18 ..     426     431 ..     425     431 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
                 EEETTTSSS-THHHHHS CS
        Fer4   2 videekCigCGaCvevC 18 
                 ++d++kCi C +Cv +C
  CCG92778.1 220 TFDPSKCIVCFRCVRAC 236
                 68*************** PP

  == domain 2  score: 25.5 bits;  conditional E-value: 6.7e-09
                 TTSSS-THHHHHSTTTEE CS
        Fer4   6 ekCigCGaCvevCPvgAI 23 
                 + C+ CGaCv++CP+ A+
  CCG92778.1 267 SECVSCGACVMACPTAAL 284
                 78*************997 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6
                 HHHHHS CS
        Fer4  13 aCvevC 18 
                 +C+ vC
  CCG92778.1 426 TCARVC 431
                 6***** PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.7     0.013        14      33      47 ..     209     237 ..     159     240 .. 0.69
   2 !   23.6   7.6   3.9e-08   4.4e-05       1      50 [.     225     283 ..     225     285 .. 0.66
   3 ?    2.4   0.8      0.15   1.7e+02       3      27 ..     301     325 ..     301     340 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.013
      Fer4_9  33 e..............eaCigCgaCveaCp 47 
                                ++Ci C +Cv aC 
  CCG92778.1 209 TspkdktnpyftfdpSKCIVCFRCVRACD 237
                 24455555666666689999999999996 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 3.9e-08
      Fer4_9   1 kCtgCgaCveaC.........pagvvvedaaerkarlraase.......eaCigCgaCveaCpkga 50 
                 kC+ C +Cv+aC                 + ++++++            ++C++CgaCv aCp+ a
  CCG92778.1 225 KCIVCFRCVRACdeiqgtlalT------ARHRGFDSVITP-GptheflsSECVSCGACVMACPTAA 283
                 7***********8875443331......222222222222.1355677789************976 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.15
      Fer4_9   3 tgCgaCveaCpagvvvedaaerkar 27 
                 t C +C   C +++ ++ +    + 
  CCG92778.1 301 TTCAYCGVGCSFEAQTQGNEVIRMV 325
                 57********999997766655554 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   2.7    0.0009         1       2      20 ..     218     236 ..     217     236 .. 0.93
   2 !   17.1   2.7   3.7e-06    0.0042       9      22 .]     268     281 ..     262     281 .. 0.86
   3 ?   -2.8   0.3       8.3   9.3e+03      15      20 ..     426     431 ..     423     434 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0009
      Fer4_2   2 pvvvdtdrCigCgaCvsaC 20 
                 ++ +d+ +Ci C  Cv aC
  CCG92778.1 218 YFTFDPSKCIVCFRCVRAC 236
                 689**************** PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3.7e-06
      Fer4_2   9 rCigCgaCvsaCPa 22 
                  C++CgaCv aCP+
  CCG92778.1 268 ECVSCGACVMACPT 281
                 4************7 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 8.3
      Fer4_2  15 aCvsaC 20 
                 +C  +C
  CCG92778.1 426 TCARVC 431
                 688888 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7  11.5   2.6e-06    0.0029       4      56 .]     221     280 ..     218     280 .. 0.90
   2 !   10.1   7.6    0.0006      0.68       7      49 ..     267     307 ..     261     323 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.6e-06
     Fer4_10   4 idddtCirCgkCvkaCPadl.........tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 +d+++Ci C +Cv+aC  d          ++ g    ++++ + +  +++C  cgaCv aCP
  CCG92778.1 221 FDPSKCIVCFRCVRAC--DEiqgtlaltaRHRGFDSVITPGPTHEFLSSECVSCGACVMACP 280
                 799*************..6679****99877888888888888899***************9 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0006
     Fer4_10   7 dtCirCgkCvkaCPadltsvgakgeaseeeavrkkvekCtgcg 49 
                 + C+ Cg+Cv aCP+   +      ++++ + +  +  C  cg
  CCG92778.1 267 SECVSCGACVMACPT--AALIEDTVIEKGLPLKSTITTCAYCG 307
                 67*************..33333344444444445666666665 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.4   0.00021      0.24       2      21 ..     220     239 ..     219     258 .. 0.88
   2 !    6.9   1.1    0.0094        11       6      21 ..     267     282 ..     266     293 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00021
     Fer4_15   2 vvDrdaCigcglCvaeapev 21 
                 ++D ++Ci c++Cv++++e+
  CCG92778.1 220 TFDPSKCIVCFRCVRACDEI 239
                 789**************875 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0094
     Fer4_15   6 daCigcglCvaeapev 21 
                 ++C +cg+Cv ++p+ 
  CCG92778.1 267 SECVSCGACVMACPTA 282
                 58***********976 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.7      0.13   1.5e+02       1      12 [.     225     236 ..     205     240 .. 0.85
   2 ?   15.7   6.9   1.9e-05     0.021       2      29 ..     269     294 ..     268     338 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.13
     Fer4_16   1 rCgtCgkCaevC 12 
                 +C+ C +C+ +C
  CCG92778.1 225 KCIVCFRCVRAC 236
                 488888888888 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.9e-05
     Fer4_16   2 CgtCgkCaevCPtnaikekkekeieare 29 
                 C++Cg+C+++CPt+a+ e+  ++ie+  
  CCG92778.1 269 CVSCGACVMACPTAALIED--TVIEKGL 294
                 ****************999..7777655 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.4    0.0016       1.8      84     104 ..     225     245 ..     223     255 .. 0.87
   2 ?   10.5   4.7   0.00046      0.52      57      95 ..     265     310 ..     246     323 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0016
     Fer4_18  84 eciscllcidacdkvmeklgk 104
                 +ci c +c+ acd++ ++l +
  CCG92778.1 225 KCIVCFRCVRACDEIQGTLAL 245
                 7**************988765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00046
     Fer4_18  57 gagdcidcescvkvcPtgid.....irkGlqlec..iscllcidac 95 
                  +++c++c++cv  cPt        i kGl l+    +c+ c   c
  CCG92778.1 265 LSSECVSCGACVMACPTAALiedtvIEKGLPLKStiTTCAYCGVGC 310
                 5789************986401222566766653214566665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (990 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 6598.89
//
Query:       CCG92779.1  [L=79]
Description: Formate dehydrogenase delta subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-26   91.0   0.0    4.9e-26   90.8   0.0    1.1  1  FdsD      NADH-dependant formate dehydrogenase delta subunit 


Domain annotation for each model (and alignments):
>> FdsD  NADH-dependant formate dehydrogenase delta subunit FdsD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.0   2.7e-30   4.9e-26       2      61 .]      12      72 ..      11      72 .. 0.96

  Alignments for each domain:
  == domain 1  score: 90.8 bits;  conditional E-value: 2.7e-30
        FdsD  2 LikMaNqIaaffesqpdreeavegvadHikkfWeprMRraLlayl.eaggaeLsplvreAv 61
                Li MaNqI++ff+ +p+ eeaveg+a+H++kfW+p+MR++++ y+ +++g++L+plvr Av
  CCG92779.1 12 LIFMANQIGEFFKNYPTTEEAVEGIANHLRKFWSPSMRQRIIGYVeKTEGEKLAPLVRLAV 72
                9********************************************7788888******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 577.55
//
Query:       CCG92780.1  [L=228]
Description: putative 3-methyladenine DNA glycosylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-52  176.3   0.0    4.6e-52  176.0   0.0    1.1  1  Pur_DNA_glyco  Methylpurine-DNA glycosylase (MPG)


Domain annotation for each model (and alignments):
>> Pur_DNA_glyco  Methylpurine-DNA glycosylase (MPG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.0   0.0   2.6e-56   4.6e-52       6     172 ..      14     191 ..       9     193 .. 0.96

  Alignments for each domain:
  == domain 1  score: 176.0 bits;  conditional E-value: 2.6e-56
  Pur_DNA_glyco   6 dalevAkeLLGkvlvreleegkvagrivEtEAYlgeeDpAshayrgr.ternavmFgppgtlYvYliygihhclnvvteeegeasaVLiRalevve 100
                    d+++ A  +LGk l+++ ++g +ag+i+EtEAY+g+eD+A+h y +r t+rn+++F+++g +YvY++yg+hh+ln+v ++eg++ aVLiR++ ++e
     CCG92780.1  14 DPVQGALFFLGKKLTVRDPKGIIAGIIIETEAYGGAEDKACHGYGNRlTPRNKIIFQQGGITYVYFCYGMHHLLNFVLGPEGIPMAVLIRGVIITE 109
                    566778889**********9**************************************************************************** PP

  Pur_DNA_glyco 101 glelmrarrg......lanGPgkLcqaLgidkelngadlleseelvle..keeaeeeeivagpRiGiskaae...lpwRfyik 172
                    g el+++rr+       a+GPgk+++ +gi++++ng +l+ +e++++e  + e++++ei+++pRiG+++a+e   +p+Rf+ k
     CCG92780.1 110 GKELVKSRRKgipehqWADGPGKVTKTMGITLADNGISLI-GERIWVEesGLEVPDSEIERTPRIGVDYAEEwakKPLRFVWK 191
                    ***************************************9.89*****887789*****************9999*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1821.79
//
Query:       CCG92781.1  [L=111]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-26   92.5  12.9    1.9e-26   92.3  12.9    1.0  1  DUF4870      Domain of unknown function (DUF4870)
     0.0052   16.3   5.8     0.0056   16.2   5.8    1.0  1  AveC_like    Spirocyclase AveC-like
  ------ inclusion threshold ------
      0.019   14.7  11.5      0.024   14.4  11.5    1.1  1  Yip1         Yip1 domain
       0.54   10.4   1.9        3.6    7.7   0.5    2.0  2  DUF2407_C    DUF2407 C-terminal domain
        1.4    9.3   0.0        1.4    9.3   0.0    2.6  2  DUF5436      Family of unknown function (DUF5436)
        2.4    6.9   3.4        2.9    6.6   3.4    1.1  1  PV-1         PV-1 protein (PLVAP)
        5.7    5.1  10.6        6.3    5.0  10.6    1.0  1  DUF2070      Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> DUF4870  Domain of unknown function (DUF4870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3  12.9   7.5e-30   1.9e-26       2     110 .]       7     110 ..       6     110 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 7.5e-30
     DUF4870   2 rnlaalihlsalsklliplgniilPlviwllkkdksefvdeqgkealNFqislliysiilivlsllvligflllllllllllnlvlviiaaikanegee 100
                 +nla+l+hl+ l+ +++ +g+i++Pl+i+ll kd+  fv+ q++ealN qis+++y++i+++l + vlig+  ll+++l+++ ++ +i a+i++++g++
  CCG92781.1   7 KNLALLAHLAPLIGYFFAIGQILVPLIIFLLAKDP--FVKMQAREALNAQISFTVYFLICLFL-FSVLIGY--LLIFFLGIFVIWTMIAASIAVSRGKT 100
                 89*********************************..**************************.9*****9..************************** PP

     DUF4870 101 yrypltirfi 110
                 y+yp ++r++
  CCG92781.1 101 YNYPYIFRLV 110
                 ********96 PP

>> AveC_like  Spirocyclase AveC-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   5.8   2.2e-06    0.0056      63     147 ..      22     108 ..       6     111 .] 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.2e-06
   AveC_like  63 llvlgyimfvllpailgiallrkikarwplisplrLiavvlvigfvldlilealvlvrlGly.iYsqvipslslfaGtkyQfP.iYe 147
                 ++ +g i + l++ +l+     k++ar  l  ++   +  l+  f++ +++  l+ + lG++ i++ +  s+++  G++y +P i+ 
  CCG92781.1  22 FFAIGQILVPLIIFLLAKDPFVKMQAREALNAQISFTVYFLICLFLFSVLIGYLLIFFLGIFvIWTMIAASIAVSRGKTYNYPyIFR 108
                 3447777777888888888999**************************************98469******************9986 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4  11.5   9.2e-06     0.024      54     149 ..       6      96 ..       1     100 [. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.2e-06
        Yip1  54 vqgltlssllgaiiggylglllgllllalllhliakllg....gkgsfkqtlsvvgyallPlilgaliaillllllgtllllvgllaliWslvllylgl 148
                 + +l+l+++l+ +ig++++  +g +l+ l+++l+ak        +  +   +s+++y l+ l+l+++++++ll+++ +       +++iW++++ ++++
  CCG92781.1   6 SKNLALLAHLAPLIGYFFA--IGQILVPLIIFLLAKDPFvkmqAREALNAQISFTVYFLICLFLFSVLIGYLLIFFLG-------IFVIWTMIAASIAV 95 
                 5677788888889999996..************9998885544444488899*******************9998887.......*********99998 PP

        Yip1 149 k 149
                 +
  CCG92781.1  96 S 96 
                 7 PP

>> DUF2407_C  DUF2407 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.071   1.8e+02      98     134 ..      18      59 ..       3      65 .. 0.63
   2 ?    7.7   0.5    0.0014       3.6      93     123 ..      70      99 ..      66     102 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.071
   DUF2407_C  98 liGfflglfal.....llllkeegllnkrqkmaviaGvlvnl 134
                 liG+f+ ++ +     ++ll+++  ++ + + a+ a + + +
  CCG92781.1  18 LIGYFFAIGQIlvpliIFLLAKDPFVKMQAREALNAQISFTV 59 
                 688888877641111157777777777777666666665555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0014
   DUF2407_C  93 lliGlliGfflglfalllllkeegllnkrqk 123
                 +liG+l+ fflg+f+ ++ +   ++  +r k
  CCG92781.1  70 VLIGYLLIFFLGIFV-IWTMIAASIAVSRGK 99 
                 799**********99.888888878777765 PP

>> DUF5436  Family of unknown function (DUF5436)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00055       1.4      40      65 ..       2      27 ..       1      30 [. 0.88
   2 ?   -2.0   3.0       1.9   4.8e+03      56      62 ..      57      63 ..      46      89 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00055
     DUF5436 40 vandahnlvhlihlihfiiyffiird 65
                ++ +++nl  l+hl  +i yff i +
  CCG92781.1  2 ISSESKNLALLAHLAPLIGYFFAIGQ 27
                677899****************9965 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.9
     DUF5436 56 fiiyffi 62
                f +yf+i
  CCG92781.1 57 FTVYFLI 63
                5555544 PP

>> PV-1  PV-1 protein (PLVAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.4    0.0011       2.9      22      55 ..      59      92 ..      46     101 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0011
        PV-1 22 WyylryfflfvsliqfliilGlvlfmvyGnvhvs 55
                 y+l  +flf  li +l+i+ l +f+++  + +s
  CCG92781.1 59 VYFLICLFLFSVLIGYLLIFFLGIFVIWTMIAAS 92
                599***********************99877665 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  10.6    0.0025       6.3      26     109 ..      11      94 ..       3     110 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0025
     DUF2070  26 lligllaflssklfgillfglpalvaflltlpvlrilggr.ltykrslflalltelivviisllaillsall.qalvllalvlsla 109
                 ll+ l+  + + +f+i  +++p+++ +l+  p++++  +  l+ + s+++ +l+ l+++  +l+++ll ++l   ++  +++ s+a
  CCG92781.1  11 LLAHLAPLIGY-FFAIGQILVPLIIFLLAKDPFVKMQAREaLNAQISFTVYFLICLFLFS-VLIGYLLIFFLgIFVIWTMIAASIA 94 
                 33333332222.778888999999999999999988777777777774443333333333.2444444433332222233333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1099  (0.0612973); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 785.27
//
Query:       CCG92782.1  [L=215]
Description: Uncharacterized erfK/srfK family protein,probably secreted [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-19   69.0   0.3    8.9e-19   68.3   0.3    1.3  1  YkuD      L,D-transpeptidase catalytic domain


Domain annotation for each model (and alignments):
>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.3     5e-23   8.9e-19       3     146 .]      47     176 ..      45     176 .. 0.77

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 5e-23
                 EEEEETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTT.......CECCCCEEE CS
        YkuD   3 yivvdlaeqrllvlyengklvlsfpvsvGgkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskv.......algkvkfvf 94 
                 ++ ++l++q l +++++ k vl + v++G k   ++ TP+G+f++  k+++  ++ ++ +    +y +   d ++                   ++++ 
  CCG92782.1  47 VVKISLNNQAL-YIVKGEKIVLATHVCTG-K---GDTTPTGHFKVLDKQQRKRSSSYGFWVKDGKYIP--SDISG-------RpgagwryVGYPMPYAV 131
                 56778889555.777999999********.4...58*****************877776644333322..12222.......13444554778999*** PP

                 -STTS-EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEEEE CS
        YkuD  95 pngsgiyiHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpvvi 146
                 ++ +g+yiH+ +        ++ +rShGCirl+ ++a+++y+lv+ gtp+vi
  CCG92782.1 132 EFLPGYYIHQGYV-------WPVPRSHGCIRLEWKEAEKFYQLVDIGTPIVI 176
                 *********4433.......35699*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1482.88
//
Query:       CCG92783.1  [L=934]
Description: Predicted exporter of the RND superfamily [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-42  144.8   0.1    1.4e-28   99.8   0.0    3.1  3  MMPL       MMPL family
     0.0001   20.2   0.4     0.0001   20.2   0.4    2.9  2  ACR_tran   AcrB/AcrD/AcrF family
     0.0014   18.1  23.2     0.0037   16.7  11.4    2.9  2  SecD_SecF  Protein export membrane protein
  ------ inclusion threshold ------
        3.9    7.7   7.4        0.5   10.6   2.3    2.1  2  DUF3958    Protein of unknown function (DUF3958)


Domain annotation for each model (and alignments):
>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.0   3.2e-32   1.4e-28      43     319 ..     200     474 ..     183     483 .. 0.83
   2 ?   -0.0   0.1     0.074   3.3e+02     188     221 ..     483     516 ..     479     518 .. 0.89
   3 !   40.5   0.0   3.4e-14   1.5e-10      50     305 ..     646     914 ..     561     923 .. 0.68

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 3.2e-32
        MMPL  43 saaaeaavdelvdelkkdtkhvgevsdflsdpdvaaafvS.kDgkaaralvt.legdpgsteadesvaairaaveear.pleglkvevtGpaatladlr 138
                 + +++  v++   +l++++    +v d  +    +  f+S +Dgk + ++ +  +g ++ ++  e++++ir+++++   +  +l + +tG +++ +d+ 
  CCG92783.1 200 KPNYQVKVQKSSLQLQDKDMSNLKVEDI-RSILEDHEFLSfEDGKLVLVTASpGKGASDGQKRTETIKKIRQIIADIGmEYPSLSIGLTGEPVLEDDQL 297
                 3456666666666666666666666666.333355566665899999998873578888899999***********99999****************** PP

        MMPL 139 dasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalgl.vlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedr 236
                 + s++d+    ++++ ++  + +i yr ++ +++ l++ ++ l  +l++ ++ + +l      + +    v+++i+ G+D+ + ++sRy ee+  g++ 
  CCG92783.1 298 QESSKDSLNSALLAFSLVSFLFFISYREILRPAIGLIVLAMALCWSLAFpMVTIGHL------NIISEAFVAMVIGMGIDFSIQFMSRYEEEISGGKTI 390
                 **********************************99999999999999944444444......4455667899************************** PP

        MMPL 237 eeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGraa.lakprrkrkkrwW 319
                  ea+ ++ + tg +++  G t aia++ + + ++  l+++G++++ G+l+ +l +lTllPA+   +  +  l + r+ + k+ W
  CCG92783.1 391 LEALKTTSKHTGAAIFTGGCTTAIAFFTMCFNDFIGLQEFGIVAGFGILFCLLSSLTLLPAMYFWIDSKIgLNRIRQSTIKTTW 474
                 *************************************************************99877655557777777777777 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.074
        MMPL 188 vlilalllglelstfvlgllvvlliavGtDYall 221
                 vl+++    l+l++ ++ +   ++  vG DY+ll
  CCG92783.1 483 VLFFSPRGTLTLASLATVFFAFMIPKVGFDYNLL 516
                 78888899999999999999999999*******8 PP

  == domain 3  score: 40.5 bits;  conditional E-value: 3.4e-14
        MMPL  50 vdelvdelkkdtkhvgevsdf................................lsdpd....vaaafvSkDgkaaralvtlegdpgsteadesvaaira 112
                 + +l+ +l++ +k+++++  +                                ++++d    v + f+S+ gk ++ ++  e + ++++a   v+ + +
  CCG92783.1 646 FSKLIPALSRIQKQMNKLPKTelnkrlsraqfeifgtmesgllwlrsqdtsrgVTKDDlpkeVLERFLSPHGKILIEIIPKE-NVWERKA--DVQFVND 741
                 3333333333333333333336666655555555555555555444444444422333456799999999999988888888.5555444..3333444 PP

        MMPL 113 aveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvll 211
                 +    r    ++ +vtG+++ + +  ++ +++ + +   ++v i+++ ++ +++l+  +l l   v+  + +lg  + +  + +   +     ++  l+
  CCG92783.1 742 I----R---KVDPKVTGTPVQNYEYIELLRKSYTEAAQWAFVAIVILIVLRFQNLLYSILALFPLVLAAIWTLGW-MGFFSIPFNPAN----IITLPLA 828
                 4....3...344489*************9999999999999999999999999*****99999999999999988.333333343433....3455678 PP

        MMPL 212 iavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGra 305
                 i++G++Y +  v Ry e  +a   +        +stgk+++ +Glt +i +++L++++ + l ++G+++ +++ + +  +l +lP +  l++ +
  CCG92783.1 829 IGAGVAYGIYTVDRYSEDGNAQLFS--------TSTGKAILVSGLTAVIGFASLLISSYQGLYSLGLVMTIAISFCLITSLIILPQVFYLMSNK 914
                 9****************99988888........9*************************************9999999999999*999999988 PP

>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.4   2.3e-08    0.0001     293     488 ..     262     455 ..     198     519 .. 0.73
   2 ?  -10.8  16.2         4   1.8e+04     341     401 ..     776     835 ..     754     920 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.3e-08
                 HHHHHHHHHHHHCCGGG...SSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHSSHHHHH...HHHHHHHHHHHHHHHHHHHTT--BC CS
    ACR_tran 293 ievakavkekleeLkes...lPegveivvvydrtefvrasieeVvktLleaivLvv.lvvflFLqnlratl...ipaiavPlsllgtfavlkalgfslN 384
                  e++k++++ ++ +  +   l+ g+  ++v+++       ++e +k+ l +++L++ lv flF  + r  l   i +i++ ++l   +a+  +    lN
  CCG92783.1 262 TETIKKIRQIIADIGMEypsLSIGLTGEPVLEDD-----QLQESSKDSLNSALLAFsLVSFLFFISYREILrpaIGLIVLAMALCWSLAFPMVTIGHLN 355
                 5666666666666655411133344444444443.....344555555555555543666777766666552226677788888888887444444588 PP

                 HHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
    ACR_tran 385 llt..LfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltl 481
                  ++   +++v+  G+ +D +i  +   e++++  g++ lea + ++k  + a+  + ++  ++f  ++ +++++G   ++f++   + il  +l +ltl
  CCG92783.1 356 IISeaFVAMVI--GMGIDFSIQFMSRYEEEISG-GKTILEALKTTSKHTGAAIFTGGCTTAIAFF-TMCFNDFIG--LQEFGIVAGFGILFCLLSSLTL 448
                 88733566666..9999***************9.9999999999988888887777777777776.56789****..6********************* PP

                 HHHHHHH CS
    ACR_tran 482 tPalcal 488
                  Pa+  +
  CCG92783.1 449 LPAMYFW 455
                 ***9655 PP

  == domain 2  score: -10.8 bits;  conditional E-value: 4
                 HHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHHHHHHHHHHHHHHH CS
    ACR_tran 341 ivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNlltLfgLvlAiGlvvDd 401
                 +++v+l+v+ F qnl  ++  +  + l+ + t+  + ++ +  N   ++ L lAiG  v  
  CCG92783.1 776 VAIVILIVLRF-QNLLYSILALFPLVLAAIWTLGWMGFFSIPFNPANIITLPLAIGAGVAY 835
                 34455555555.8888888888888888888888888888888888888888888865544 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   4.0    0.0019       8.5      37     184 ..     310     454 ..     296     459 .. 0.72
   2 !   16.7  11.4   8.2e-07    0.0037      30     187 ..     764     912 ..     758     914 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHHHHH CS
   SecD_SecF  37 llialvliliyvalrFewrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnqtLtrt 135
                 l+++lv  l++++ r   r a++ i+ l+  ++  +++  ++   ++  + a + ++iG  ++ ++  + r +e++     +t+ e++++  ++t   +
  CCG92783.1 310 LAFSLVSFLFFISYREILRPAIGLIV-LAMALCWSLAFPMVTIGHLNIISEAFVAMVIGMGIDFSIQFMSRYEEEISG--GKTILEALKTTSKHTGA-A 404
                 33444555555555544566776655.44455655555554444444444444558*******************877..89999999999999988.5 PP

                 HHT.THHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHHH CS
   SecD_SecF 136 ilt.slttllvvvallllggdslkdfalallvGlivgtyssifiasplll 184
                 i t   tt+++ +++++     l++f ++  +G+++  +ss+ +  ++  
  CCG92783.1 405 IFTgGCTTAIAFFTMCFNDFIGLQEFGIVAGFGILFCLLSSLTLLPAMYF 454
                 66516789999999999999*********************976665555 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 8.2e-07
                 HHHHHHHHHHHHHHHHHHHHHHT-H.HHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHH CS
   SecD_SecF  30 aekavlallialvliliyvalrFew.rvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinls 127
                 +++   a   a+v+i+i ++lrF++  + + a+  lv  +i t+g +  + i++++a ++ l   iG  v   +   dr  e+ +        +++ +s
  CCG92783.1 764 RKSYTEAAQWAFVAIVILIVLRFQNlLYSILALFPLVLAAIWTLGWMGFFSIPFNPANIITLPLAIGAGVAYGIYTVDRYSEDGNA-------QLFSTS 855
                 5555667889*************9735899*************************************************9999444.......455555 PP

                 HHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHHH CS
   SecD_SecF 128 lnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiasplllllk 187
                   + +    +  lt+++  ++ll+   + l ++ l++++++ +  ++s+ i  ++ +l++
  CCG92783.1 856 TGKAIL---VSGLTAVIGFASLLISSYQGLYSLGLVMTIAISFCLITSLIILPQVFYLMS 912
                 555544...677888889999999999999999999999999999999999888887776 PP

>> DUF3958  Protein of unknown function (DUF3958)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.3   0.00011       0.5       9      98 ..     129     217 ..     127     223 .. 0.82
   2 ?   -1.8   0.2      0.79   3.5e+03      64      80 ..     579     595 ..     551     632 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
     DUF3958   9 elrelaekqeenekelkkqeqlkeeyeehfnqskrlfdelletfrkdeeshlfeklrdevqrlsrklredLEeeee.eLkrekrqLedqee 98 
                 +l+++ ++ +   k+lk+q ++k +++++ nq+++ f+e  + +rk+e+   f  + d+++++  +l ++LE++ + + k +k  L+ q  
  CCG92783.1 129 DLKKIDSEIDGYVKALKEQPEIKLDLNTVLNQANEKFQE--SYLRKHENWKEFIPFIDRFISILNQLADQLEQKPNyQVKVQKSSLQLQDK 217
                 5778888889999*************************8..568999999999*******************9843244445555555444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.79
     DUF3958  64 lrdevqrlsrklredLE 80 
                 +++e  ++ r+++++L 
  CCG92783.1 579 QQEEKLQIIRNIVDKLK 595
                 44444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1338  (0.0746277); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.57
# Mc/sec: 4947.70
//
Query:       CCG92784.1  [L=205]
Description: Restriction endonuclease, McrA/HNH family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-18   64.5   0.7    9.3e-18   63.8   0.7    1.3  1  HNH_5     HNH endonuclease
    1.6e-14   53.8   0.9      3e-14   52.9   0.9    1.5  1  HNH       HNH endonuclease
    2.2e-08   33.9   0.1    5.1e-08   32.7   0.0    1.7  2  HNH_4     HNH endonuclease
  ------ inclusion threshold ------
       0.28   11.4   3.3       0.55   10.4   3.1    1.6  1  DUF4451   Domain of unknown function (DUF4451)


Domain annotation for each model (and alignments):
>> HNH_5  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.7   2.1e-21   9.3e-18       1      55 [.     112     166 ..     112     167 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 2.1e-21
       HNH_5   1 CiyCgkeiaekelseeHIiPeslGGkltisnlvtlCkkCNqkkgqkvdaalskqf 55 
                 C+yCg +++++ l+ +H+iP+ +GGk+t++n+v++C +CN+kkg+++++++++++
  CCG92784.1 112 CQYCGGKFDPSYLNLDHVIPRERGGKTTWENVVCSCIRCNSKKGNRTPQEAGMKL 166
                 **************************************************99987 PP

>> HNH  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.9   6.6e-18     3e-14       1      47 []     112     157 ..     112     157 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 6.6e-18
         HNH   1 CeyCgrkfhksealevdHiipisqggaddieNlqllCksCHnkkhdr 47 
                 C+yCg kf+ s +l+ dH+ip+ +gg++++eN+++ C +C++kk++r
  CCG92784.1 112 CQYCGGKFDPS-YLNLDHVIPRERGGKTTWENVVCSCIRCNSKKGNR 157
                 **********8.********************************997 PP

>> HNH_4  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.5   6.9e+03       2      12 ..      35      45 ..      35      54 .. 0.65
   2 !   32.7   0.0   1.1e-11   5.1e-08       1      54 [.     112     159 ..     112     160 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.5
                SSSSSB--GGG CS
       HNH_4  2 lYsgekIsied 12
                lY+g  + +++
  CCG92784.1 35 LYCGHAYVVHK 45
                58888877766 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 1.1e-11
                 -SSSSSB--GGGGGG...SEEEESSTTTT---BSGGGEEEES-GGGGTSSSSSS CS
       HNH_4   1 clYsgekIsiedlsdtkeydiDHilPrsrskdDsvsNkVLvlrdaNqeKsnrtP 54 
                 c Y+g k +++ l      ++DH++Pr r+   ++ N V  + ++N +K+nrtP
  CCG92784.1 112 CQYCGGKFDPSYL------NLDHVIPRERGGKTTWENVVCSCIRCNSKKGNRTP 159
                 8899999999888......59********************************9 PP

>> DUF4451  Domain of unknown function (DUF4451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.1   0.00012      0.55      28      92 ..      36     116 ..      30     167 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
     DUF4451  28 iCeeev...ekkekflklknssyekhlsfeHG...vlsngslvpePill..........rskkrrkakekekegivCpkCn 92 
                 +C + +   ++k  f+ l   ++++h +  HG   v++  +++  P+++          ++ k ++++  e++g +C++C 
  CCG92784.1  36 YCGHAYvvhKNKDDFYTLDFFEWKEHSQAYHGsdvVHTVSFKIRVPKVIllllfekvprKEVKFTRHNVFERDGYLCQYCG 116
                 56655566688999*****************9665559999******9999***9988777777777777999999***95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1412.88
//
Query:       CCG92785.1  [L=194]
Description: Hemoglobin-like protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-15   55.5   0.0    7.6e-15   55.1   0.0    1.2  1  Bac_globin  Bacterial-like globin


Domain annotation for each model (and alignments):
>> Bac_globin  Bacterial-like globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   4.2e-19   7.6e-15       6     116 ..      58     167 ..      55     172 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 4.2e-19
                 HTHHHHHHHHHHHHHHHHHT-CCCCCCGGGTTSSHHHHHHHHHHHHHHHTTSSSHHHHHHSS-.HHHHHTTS--BHHHHHHHHHHHHHHHHHCT--HHH CS
  Bac_globin   6 iGgeatveelvdrfYervdedeeealseifsgtdlegsreklveFlvqalgGPelYverrGhPrlrkrHapfeitaaerdawlkhlaeAleetgvssed 104
                 + ge+ +++lv + +e + + + ++l +    +++e+   +  +F v++ gGP+ Y+  rG Pr+r rH+ + i +++r+ wl + + Al+e+  +   
  CCG92785.1  58 VAGEELLRKLVLKHHENLIKSQIFYLFP-TDKAEMEKLVRRSADFVVEMCGGPSYYTASRGEPRMRSRHFSVTIDEKAREVWLACYKYALKEVNFPFSV 155
                 6789999999999999999999966655.46778999*******************************************************9988887 PP

                 HHHHHHHHHHHH CS
  Bac_globin 105 reeklelleala 116
                  ee ++ +e + 
  CCG92785.1 156 LEEFWQWIESFS 167
                 777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1307.15
//
Query:       CCG92786.1  [L=103]
Description: hypothetical protein MFUM_80024 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 791.51
//
Query:       CCG92787.1  [L=38]
Description: hypothetical protein MFUM_800001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 299.66
//
Query:       CCG92788.1  [L=760]
Description: Phosphoribosylformylglycinamidine synthase 2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-49  165.1   2.2    3.5e-24   85.3   0.3    2.5  2  AIRS            AIR synthase related protein, N-terminal doma
    7.6e-43  146.3   0.4    1.7e-26   93.3   0.1    2.3  2  AIRS_C          AIR synthase related protein, C-terminal doma
    3.8e-12   46.5   0.0    8.9e-12   45.4   0.0    1.6  1  FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransfe


Domain annotation for each model (and alignments):
>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.3   5.8e-28   3.5e-24       4      94 .]      96     204 ..      84     204 .. 0.94
   2 !   79.2   0.1   4.5e-26   2.7e-22       2      94 .]     456     575 ..     455     575 .. 0.92

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 5.8e-28
                 EEEEEEEEEE.EECCTCCCCHHHHHHHHHHHHHHTTTEEEEEEEEEEEEC...............HHHHHHHHHHHHHHHTT-EEEEEEEEEESS.... CS
        AIRS   4 avvvttdshnrpvlvepvhfiGakavavnlsDlaamGArPlalllslalp...............wleevvrglaeaaeelgvplvgGdtsfsne.... 83 
                 avv++++shn+p++vep+++ +a++v+++ +D+++mGArP+++++sl ++                l+ vv+g+a++++++gvp+vgG+++f+++    
  CCG92788.1  96 AVVFKIESHNHPSAVEPFQG-AATGVGGIFRDIFTMGARPVCFMNSLRFGeiraekstqashnafLLRHVVAGIAHYGNCVGVPTVGGELAFDSSyegn 193
                 37******************.***********************************************************************988899* PP

                 EEEEEEEEEEE CS
        AIRS  84 ptisvtavGlv 94 
                 p+++v+++G+v
  CCG92788.1 194 PLVNVFCLGVV 204
                 *********97 PP

  == domain 2  score: 79.2 bits;  conditional E-value: 4.5e-26
                 SSEE............EEEEEEEE.EECCTCCCCHHHHHHHHHHHHHHTTTEEEEEEEEEEEEC.........HHHHHHHHHHHHHHHTT-EEEEEEEE CS
        AIRS   2 Daav............vvttdshnrpvlvepvhfiGakavavnlsDlaamGArPlalllslalp.........wleevvrglaeaaeelgvplvgGdts 79 
                 Daav            ++t d+++r++ ++p+++ +++ava+++++l ++GA Pl+++++l++          +++e++rg+a+a++ +++p++gG++s
  CCG92788.1 456 DAAVlrvilgnepvrlAATLDGNGRYCGIDPYNG-AKLAVAEAIRNLSVVGALPLGITDNLNFAdpnnslvywQFKEAIRGIADACRFFDIPVTGGNVS 553
                 888444455555555599****************.**************************************************************** PP

                 EESS.......EEEEEEEEEEE CS
        AIRS  80 fsne.......ptisvtavGlv 94 
                 f+n        pt++++avGl+
  CCG92788.1 554 FYNYskegailPTPVIGAVGLI 575
                 **88899*************85 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.1   2.8e-30   1.7e-26       4     150 ..     219     367 ..     216     372 .. 0.93
   2 !   51.3   0.0   2.2e-17   1.3e-13       1     152 [.     588     730 ..     588     734 .. 0.88

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 2.8e-30
                 EEEEEEET....SSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHHH CS
      AIRS_C   4 dvliltgs....lGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpifd 98 
                 + ++  gs    +Gl ga+ +++rk+ e++++++ +vq++d+++ + l+ ++++l ++ g v +++D+++ GL+++++e a+ ++ g+ei+ld+vp+++
  CCG92788.1 219 NPVFIAGSktgrDGLKGAA-FASRKLEEQKTEERYSVQIADPFMGRILMSACLELFQEPGVVVGIQDMGAAGLICSTSETAARAKRGMEINLDNVPVRE 316
                 555556666677*******.888999999999877*********************99***************************************** PP

                 HHHHHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEESSS CS
      AIRS_C  99 elesplemllsensGrllvavppeeadavlaileeeglpeaavIGevtakee 150
                   + ++e+llse+++r+l+++ +++ d+++a+++++g+p +++IG+v+++e+
  CCG92788.1 317 ADMQAEEILLSESQERMLLIIHKDKVDRAKAVFTKWGVP-FTQIGQVIKEEK 367
                 **************************************7.********9986 PP

  == domain 2  score: 51.3 bits;  conditional E-value: 2.2e-17
                 STTEEEEEEET..SSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHH CS
      AIRS_C   1 kpGdvliltgs..lGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpif 97 
                 +pG +++l+g+   Gl+g+  +l+++++ +  +     +   +++e+++ +v r+l+ + glv+ ahD+++GGL+ al e +  ++ ++  ++   p  
  CCG92788.1 588 RPGETIVLLGGwgEGLQGSL-YLQEWLGITGNQL----PWFHLEAEKKHNEVLRLLISE-GLVSTAHDLSEGGLALALIESIGSGRKKLGCSIV-FPTN 679
                 79******************.7777777777777....7999****************8.**********************998665555554.4555 PP

                 HHHHHHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEESSSEE CS
      AIRS_C  98 delesplemllsensGrllvavppeeadavlaileeeglpeaavIGevtakeels 152
                   l    e+l+ e   r +v+vp+++  +vl  ++  gl ea vIGev ++  l+
  CCG92788.1 680 RRL---DELLFNEAGARTIVSVPKNKLSQVLCNCQHKGL-EAVVIGEVLEDYVLK 730
                 555...899******************************.8********986655 PP

>> FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransferase linker domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   1.5e-15   8.9e-12       9      50 .]      23      61 ..      18      61 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 1.5e-15
  FGAR-AT_linker  9 glaLsdeEidylqeafeklgrnPtdvElemfaqvwSEHCrHK 50
                     ++Ls +E+++l++    lgr Pt +E+ +++++wSEHC++K
      CCG92788.1 23 SFGLSFDEYQRLAQL---LGRVPTRAEMALIGVMWSEHCCYK 61
                    679************...9**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5507.34
//
Query:       CCG92789.1  [L=386]
Description: N-acetylglucosamine-6-phosphate deacetylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-11   42.6   0.0    1.7e-10   40.7   0.0    1.8  1  Amidohydro_1  Amidohydrolase family
  ------ inclusion threshold ------
      0.029   13.6   0.0       0.06   12.5   0.0    1.5  2  Aldo_ket_red  Aldo/keto reductase family
       0.16   11.0   0.0       0.31   10.1   0.0    1.4  1  NSP16         Coronavirus NSP16


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   2.9e-14   1.7e-10       2     321 ..      48     367 ..      47     383 .. 0.76

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 2.9e-14
                   EEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH.....HHHHHHH...HHHTSSSEEEEEEESSEGGS.G CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst.....giealle...aaeelplglrilggkvsldr.g 89 
                   + PGl+D+++ ++++   ++       ++  ++e +e+ +++++++G+t ++++++t+++     +++ l +   a+    +g++++g+++s+++ +
    CCG92789.1  48 IAPGLVDLQINGFGGI--DV------NSEGLSSEQFEILCRKLFENGCTHFLATIITRPRnsyqkYLQKLNQlhcALPLNCIGFHLEGPFLSPSEgS 136
                   78**********9985..55......78*****************************999*999744444444336666668**************9 PP

                   CCCSHHHHHHHHHHHHHHHHHHCTTTCEE.EEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTT CS
  Amidohydro_1  90 saetskasreklkagaaetikgkadgvvk.valapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaeslgll 185
                    + ++++++ k +  + + + + ++g vk +++ap+ + ++s   ++ea+       l  a+ ++++++  e ++ a + +++  thl +a s    
    CCG92789.1 137 RGVHRIEWMMKPDLSWLDEVMEASGGKVKlITIAPEIDRELSIQFIREAV------ALGSAVAIGHSEASWEIIQSAVIAGAKLWTHLGNALS---- 223
                   999*************99999999999999************99999999......45555555555566666888888888999*****888.... PP

                   THCCEEEHCTCEEE..HHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHH.TSCEEEEEECT.............................. CS
  Amidohydro_1 186 deiklilahgvhlt..pteaellkerlkeagvahcpfsnsilrsgrealrkalde.GvkvglgtDga.............................. 249
                    +  +   ++v+l+  ++++ +             p+     +  + a+r + ++ G +v+l++D a                              
    CCG92789.1 224 -P-VVPKFQNVLLDviASDLPYASLI---------PDG---KHVPMVAFRALTKAlGSRVILVSD-Amagaaaspgiyhlghieivvdpqgkaiekq 305
                   .4.55577999999543344442222.........222...333355677777777889999999.4477777777777777777777667776663 PP

                   ...TSSCCGGHHHHHHHHHHHHHHCCTT...TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCT CS
  Amidohydro_1 250 ...asgnslnlleelrlalklqrgllye...deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldi 321
                        g++l             r+        +++g ++ e+ ++++  +A++lg+    G +++G +A + ++dl +
    CCG92789.1 306 sgrLGGSTL-------------RPFDGVflaHKMTGTPWWEWWDAYSVRPAEILGI--PHG-LKEGNEASFCLFDLSP 367
                   333333333.............222222223457889*******************..789.9***********9944 PP

>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.56   3.4e+03       3      35 ..      59      90 ..      59      90 .. 0.77
   2 ?   12.5   0.0     1e-05      0.06     115     191 ..     165     260 ..     138     271 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.56
                  EEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EE CS
  Aldo_ket_red  3 glGtwqlgskeeiskeealellrraleaGinff 35
                  g+G+  ++s+   s e+   l r+ +e+G+++f
    CCG92789.1 59 GFGGIDVNSE-GLSSEQFEILCRKLFENGCTHF 90
                  6777777775.7777777777899999999998 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1e-05
                   -.........HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH.........HHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHH.TT-EEEEBST CS
  Aldo_ket_red 115 p........sieevldaleelvkeGkiraiGvSnfsveqleka.........kkkkkvkivavqveynll.releeegllelckk.kgvpliaysp 191
                   +        ++e  ++++ e v  G++ aiG S+ s+e++++a         +  + + +v+   +  ll     +  +++l+ + k vp++a+ +
    CCG92789.1 165 KlitiapeiDRELSIQFIREAVALGSAVAIGHSEASWEIIQSAviagaklwtHLGNALSPVVPKFQNVLLdVIASDLPYASLIPDgKHVPMVAFRA 260
                   0555555556888999***************************87777774444444444443333333333333344455555555566666655 PP

>> NSP16  Coronavirus NSP16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   5.2e-05      0.31     154     192 ..     180     218 ..     176     226 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 5.2e-05
                 HHHHHHEEEEEEEEEEE-SSS--HHHHHHHTTEEEEEEE CS
       NSP16 154 gfikeklalGGsiaikitefswnkelyelvqkfafwtvf 192
                 +fi+e +alG ++ai  +e sw+     ++   + wt +
  CCG92789.1 180 QFIREAVALGSAVAIGHSEASWEIIQSAVIAGAKLWTHL 218
                 79*********************9999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2634.02
//
Query:       CCG92790.1  [L=464]
Description: (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-32  111.2   0.0    1.1e-31  110.4   0.0    1.4  1  Radical_SAM  Radical SAM superfamily
    3.1e-27   94.5   0.5    1.4e-26   92.4   0.0    2.3  3  UPF0004      Uncharacterized protein family UPF0004
    3.6e-08   33.3   0.1    6.3e-08   32.5   0.1    1.4  1  TRAM         TRAM domain
      0.002   18.4   0.4      0.052   13.8   0.0    2.7  3  Fer4_12      4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.019   15.1   0.4        2.2    8.4   0.0    3.3  3  Fer4_14      4Fe-4S single cluster domain
      0.033   14.3   0.0       0.13   12.5   0.0    1.9  1  TRAM_2       TRAM domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   3.8e-35   1.1e-31       1     166 [.     153     328 ..     153     329 .. 0.95

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 3.8e-35
                  EEEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS...........TTHHHHHHHHHHTCCCTEEEEEEECSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggeplly...........pdfvellerlaklavpgiritvetngt 87 
                  v++++gC++ C fC++p+   ++g +rs++v ei ee+++l   +gvke++l+g+ ++ y           ++fv+lle+l+ l+    r++++++++
   CCG92790.1 153 VSIMQGCSMHCAFCIVPT---TRGEERSRPVSEIFEEAQSL-TANGVKEIVLLGQIVNRYgakefswkngkSPFVQLLEQLSTLK-TLERLRFTSPHP 245
                  689**************9...7*******************.7889*********99999************************7.888888888888 PP

                  CHG.HHHHHHHHHTT..-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET...EEEEEEEBTTTSHHHHHHHHHH CS
                  xxx.xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  88 lpd.eeklerllelg..vdrvslgleaaddekvlklmnrghtfeevlealeklreagikr...vvdrivglpGendeeleellel 166
                      e+ +++l+e +  + +v++++++++d+ +lk m+rg+t++++l+++eklr+  i++   ++d+ivg pGe++e++ ++ +l
   CCG92790.1 246 IGFkEDLIRALKEIPqlCEHVHIPVQSGSDR-ILKAMRRGYTRSKFLQLIEKLRKE-IPDialSTDVIVGYPGETEEDFLQTCSL 328
                  8668***************************.************************.**********************999876 PP

>> UPF0004  Uncharacterized protein family UPF0004
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0   4.6e-30   1.4e-26       2      98 .]       4     102 ..       3     102 .. 0.97
   2 ?   -1.8   0.2       1.1   3.4e+03      45      78 ..     125     160 ..     123     165 .. 0.54
   3 ?   -3.5   0.0       3.7   1.1e+04      64      84 ..     189     210 ..     172     214 .. 0.62

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 4.6e-30
                 EEEE--S-CCCCHHHHHHHHHTTTSSS----SSS--SEEEEEE--SSSSHHHHTHHHHHHHHTTS..T.--EEEEEEHHHHS-HHHHHHH-TTS-EEE- CS
     UPF0004   2 vaietlGCqmNevdseelaslLkkegyelvedeeeAdvvlvnTCavrekaekkviqalrelkalk..kpekkvvvlGCmaqrekeellkeepevdlvlg 98 
                 v+++t+GCqmN+ dse++++ + ++gy++  +e+ +d++l+nTC+vr+ ae+k+i+++ +lk lk  +p+  ++++GCmaq+++ee++k+ p +dl+lg
  CCG92790.1   4 VFLKTFGCQMNVRDSEQVLQDFVEKGYTISPSEKLSDIILINTCSVRAMAEDKAIDKMLSLKGLKdkNPSIVLGIIGCMAQNRGEEIAKKYPFIDLILG 102
                 689*************************************************************9766889999**********************998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
                 --SSSSHHHHTHHHHHHHHTTS.T.--EE.EEEEHH CS
     UPF0004  45 Cavrekaekkviqalrelkalk.kpekkv.vvlGCm 78 
                 C +  + e ++ +++++  a+k +  + v ++ GC 
  CCG92790.1 125 CYIDLSEEANSQNTITKHLAKKrQAVAYVsIMQGCS 160
                 666666666667777666555522223331445775 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.7
                 TTS.T.--EEEEEEHHHHS-HH CS
     UPF0004  64 alk.kpekkvvvlGCmaqreke 84 
                 +l  +  k++v+lG +++r+++
  CCG92790.1 189 SLTaNGVKEIVLLGQIVNRYGA 210
                 3332235778888888777765 PP

>> TRAM  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   2.1e-11   6.3e-08       1      56 [.     382     438 ..     382     444 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 2.1e-11
                 XXXXXXEEEEEEEEE-..TTSEEEEEET.TEEEEETT--T...TEEEEEEEEEE-SSE CS
        TRAM   1 rsyvGstqeVlvegls.ksegegiGrtdngkvvfvpgdlpg.IGdfVeVkItkvkrqy 56 
                 ++ vG+t+e+lveg+s k+   + Grt ++  v++p+ +++  G+ + VkI +++ ++
  CCG92790.1 382 QRLVGQTVEILVEGESkKKAEKFQGRTRTNHLVIIPK-NERwRGELLPVKILQTTGHT 438
                 589**********************************.6666*********9998766 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.7e-05     0.052       6      60 ..     150     202 ..     145     203 .. 0.77
   2 ?    1.6   0.0       0.1   3.1e+02      69     120 ..     287     335 ..     283     339 .. 0.76
   3 ?   -3.4   0.0       3.5     1e+04     103     123 ..     380     401 ..     358     411 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.7e-05
     Fer4_12   6 vrlslfvsgCnlsCkgCfnketwsfksgkeftkelleeiiedlkkesiegltllG 60 
                 v ++  ++gC+++C++C+ + t+  ++++++++  +e   ++l  + +++++llG
  CCG92790.1 150 VAYVSIMQGCSMHCAFCIVPTTRGEERSRPVSEIFEEA--QSLTANGVKEIVLLG 202
                 5667779****************999999998555443..455567777777777 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.1
     Fer4_12  69 aeallelvkevkeekpekdiwlytgytleelskkekeellkeidvlvdGkfe 120
                 ++++l+l++++++e p  di l+t ++     ++  e++l+ +  l  ++f+
  CCG92790.1 287 RSKFLQLIEKLRKEIP--DIALSTDVIVGYPGET-EEDFLQTCSLLEEVQFD 335
                 5789999*****9999..6888888888777654.77777777777666666 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.5
     Fer4_12 103 ekeell.keidvlvdGkfeesl 123
                 ++++l+ + +++lv G+ +++ 
  CCG92790.1 380 KSQRLVgQTVEILVEGESKKKA 401
                 3333331445567777665554 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00075       2.2       5      55 ..     156     202 ..     152     203 .. 0.82
   2 ?    2.5   0.0      0.05   1.5e+02      64      91 ..     287     312 ..     284     336 .. 0.72
   3 ?   -0.7   0.0      0.48   1.4e+03      80     117 ..     358     395 ..     351     396 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00075
     Fer4_14   5 lsgCnlsCkgCdnketwkselgkpqteelleqilkdlkkseikiqglvltG 55 
                 + gC+++C +C   +t  +e   p +e  +e++   l+++ +  +++vl+G
  CCG92790.1 156 MQGCSMHCAFCIVPTTRGEERSRPVSEIFEEAQS--LTANGV--KEIVLLG 202
                 68**********9998899999999988887766..888888..6688887 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.05
     Fer4_14  64 kkellklvkrlkeeypekkiwletngtl 91 
                  +++l+l+++l++e+   +i l t   +
  CCG92790.1 287 RSKFLQLIEKLRKEI--PDIALSTDVIV 312
                 5789***********..67777776555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.48
     Fer4_14  80 ekkiwletngtleielektpdlkekleals.kidllvdg 117
                 + +i++e n+ l  e++++  lk+ ++++   +++lv+g
  CCG92790.1 358 SEDIKFERNYQLL-EIQNAITLKKSQRLVGqTVEILVEG 395
                 6799999999998.7776777888887777667788877 PP

>> TRAM_2  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.3e-05      0.13       1      63 [.     385     443 ..     385     444 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
                 BTSEEEEEEEE...EETTEEEEEETTS-TTTS--EEEES---T...T-EEEEEEEEEETTEEEEEE CS
      TRAM_2   1 iGktvevlvdg...eeeglyvGRsyadAPEvDgevyvtgaeklskvGdfvkvkItdadeyDLiGev 63 
                 +G+tve+lv+g   ++++ + GR+  +       v++ ++e     G++  vkI +++++  +G  
  CCG92790.1 385 VGQTVEILVEGeskKKAEKFQGRTRTN-----HLVIIPKNERWR--GELLPVKILQTTGHTFYGIP 443
                 9**********98877889*****998.....789998765435..99999999999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.36
# Mc/sec: 3865.10
//
Query:       CCG92791.1  [L=401]
Description: Predicted permease, member of the PurR regulon [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-30  105.6  30.9    3.3e-30  105.4  30.9    1.0  1  AI-2E_transport  AI-2E family transporter
  ------ inclusion threshold ------
       0.35   10.4   7.4       0.33   10.5   0.5    2.5  2  SieB             Super-infection exclusion protein B


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4  30.9   3.7e-34   3.3e-30       3     324 ..      65     395 ..      63     398 .. 0.82

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 3.7e-34
  AI-2E_transport   3 lilvllllllalypfiselllplliAlvlayllnpvvkfL.kkrgvkrvlavllvlllllvllvllvlllvpll.....iaqltqlvkslpayi 90 
                      +i++ +l++l+  +++  +l+ +++A+++a++++p + +   k   k+++ v+ +l++llv + l++ l++ ++     ++ l q++ + ++  
       CCG92791.1  65 RIIASVLFVLLGFWILHGFLVAMAWAFLIAIATWPFYSWArLKLPRKTPSWVSSLLFTLLVGALLFGPLIYGVFkagqeAIVLGQFIAHAQREG 158
                      689999********************************96333333334444444444444444444444444411111334666666777777 PP

  AI-2E_transport  91 dslqnilnelpslleele.n..liqalkqslskilsnilssi.lnsllsllasllglilslvlvllllffllldgeklrqgilkllpervrerv 180
                      +   ++l+++p + + l+       a   ++sk+l+ i+s + + +  ++  +++  +  l+++ll+lffl++dg+ l ++ l l+ + + +  
       CCG92791.1 159 APAPEWLQHIPFIGNWLTiRwnSNLATPEAASKTLAHIDSAFlFRWGKTIGFQVIHRMEVLAFTLLTLFFLYRDGRILGKKSLCLIRKLLGTSG 252
                      77777777777777666544544555667788888888887657888888889999999*********************************** PP

  AI-2E_transport 181 kailrelektlsgylrgqvlvaliigvlvfigllilgvpyalllailvglanliPyiGavivlipiaiialltggikevlivlivvllvqlieg 274
                      ++++ +l ++++g+++g +lv+l +g+l++i ++i g+p + +l+ ++g++++iP++ + +  +  a++++  g i  ++ ++i+ + v  i +
       CCG92791.1 253 ERYALHLVSVIRGTVNGLILVSLGEGILLGIAYAIVGLPDPVTLGGITGILAMIPFAAPPVFCTA-ALFLIAQGMIIQAIGIVIFGFSVLFIAD 345
                      ***********************************************************998888.55555555699***************** PP

  AI-2E_transport 275 nilePklmgkrlglhplvillsllaggklfGlvGlilavpltavikaile 324
                      ++++P l+g +++l+  ++ll  l+g++ fGl+Gl+ ++++ a++ ++ +
       CCG92791.1 346 HFIRPVLIGGAVNLPFYWVLLGTLGGLSTFGLLGLFAGPTIIAALLVAWK 395
                      *****************************************999887655 PP

>> SieB  Super-infection exclusion protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   3.6e-05      0.33      30      65 ..      74     111 ..      50     115 .. 0.76
   2 ?    2.8   1.4    0.0086        77       3      41 ..     332     370 ..     330     381 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.6e-05
        SieB  30 eyglwiglvflis..iayllaqvvskllaeikekikkk 65 
                   g+wi ++fl++   a+l+a++ + ++ +++ k+ +k
  CCG92791.1  74 LLGFWILHGFLVAmaWAFLIAIATWPFYSWARLKLPRK 111
                 568*********97789************999988766 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0086
        SieB   3 aLiiasglllllPdslleklnlgkfleeyglwiglvfli 41 
                  ++i++  +l++ d ++  + +g +++  ++w+ l+ l 
  CCG92791.1 332 GIVIFGFSVLFIADHFIRPVLIGGAVNLPFYWVLLGTLG 370
                 589*******************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.53
# Mc/sec: 2268.52
//
Query:       CCG92792.1  [L=1023]
Description: Proline dehydrogenase and delta 1-pyrroline-5-carboxylate dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.3e-104  349.5   0.0   3.1e-104  349.1   0.0    1.1  1  Aldedh          Aldehyde dehydrogenase family
    6.7e-68  229.4   0.0    1.1e-67  228.7   0.0    1.2  1  Pro_dh          Proline dehydrogenase
    4.2e-10   40.1   0.0    9.6e-10   39.0   0.0    1.6  1  Pro_dh-DNA_bdg  DNA-binding domain of Proline dehydrogenase
  ------ inclusion threshold ------
       0.11   13.1   0.1         12    6.6   0.1    3.6  3  Tn7_Tnp_TnsA_C  TnsA endonuclease C terminal


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.1   0.0  6.9e-108  3.1e-104       7     457 ..     544    1000 ..     537    1004 .. 0.93

  Alignments for each domain:
  == domain 1  score: 349.1 bits;  conditional E-value: 6.9e-108
                  SEEEEEETT.TCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH CS
      Aldedh    7 etievinPa.tgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyae 102 
                  ++++v++Pa ++ev+++vp  + +++++++++ ++   +w +lp+e+R e++r++a+ + + ++++  l+++e+Gk++ +a ae++eaid++ yy +
  CCG92792.1  544 SRLRVLSPAnSKEVVGEVPLPSDAEIEKVLSHTASFALEWDRLPLEQRVEMIRRLAKEIWKYRHDFLYLLCAEAGKTIPNALAEIREAIDFCYYYSK 640 
                  5699*****9999********************998889********************************************************** PP

                  HHHHHSE.EE.EEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHH CS
      Aldedh  103 laekleg.ev.lpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevg 197 
                  +a +l    + lp  +g+++  +++  G +++I+PWNfPl++++++l++al++GN+vv KPaeetpl+all +el+ +ag+Pk++l+vv g+g ++g
  CCG92792.1  641 EAIRLFSkPIlLPGPMGEENKLHYHGRGLWVCISPWNFPLSIFLGQLVAALLTGNVVVAKPAEETPLIALLATELAYKAGIPKEALSVVAGNG-QIG 736 
                  ***9655244255579***************************************************************************77.6** PP

                  HHHHH-TTESEEEEES-HHHHHHHHHHHHCT...TSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHH CS
      Aldedh  198 ealvehpevdkvsftGstevgrkiakaaakn...lkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklve 291 
                  + l+ hp+v+ v+ftGs e+++ ia+  +++   + ++++E+GG n ++v + a +++av++i+++af +aGQ+C++ + llvq++i +++++ l +
  CCG92792.1  737 QKLILHPSVQGVAFTGSFETAKIIARCLSQKegpIVPLIAETGGINGMVVDATAAIERAVKDIIHSAFNHAGQRCSSLRVLLVQKEISKQVLSLLSD 833 
                  ***************************66444559************************************************************** PP

                  HHHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEES..SHHHH CS
      Aldedh  292 aakklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfk..deeea 386 
                  a++++ vgdp+ ++tdvGP+is++qle+++++    +++g +ll+     ++  + gy+++P +++   p+ +++  EiFGP+l+vi+f+  +++ +
  CCG92792.1  834 ALEDMIVGDPRYSETDVGPIISPSQLETLHQFSHFFRSHG-HLLTQAPIGKTASAYGYYFAPQLFE--IPSLDLIDREIFGPILPVISFSkeELQRL 927 
                  ********************************99999988.6666555668999************..5999*****************93345678 PP

                  HHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTT.SEB--CGGGEES.-BSHHHHHHHTE CS
      Aldedh  387 ieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaea.lpfgGvkqSglG.reggkegleeyt 457 
                  +++  +  yGL+ g+ t+   ++e+++++  +Gn y+N+s+ ga+ + +pfgG + Sg+G + gg+++l +++
  CCG92792.1  928 LQKLYQKGYGLTMGLQTRLDCKIEKLSSEAPVGNFYVNRSMIGATVEsQPFGGEGLSGTGpKAGGPNYLLRFV 1000
                  ****************************************99999999************8888899998876 PP

>> Pro_dh  Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.7   0.0   2.4e-71   1.1e-67      10     291 ..     186     465 ..     177     469 .. 0.97

  Alignments for each domain:
  == domain 1  score: 228.7 bits;  conditional E-value: 2.4e-71
                 HTTEEEEEEES-SS--SHHHHHHHHHHHHHHHHHHHHHHCCS-TTCC-SEEE-GGG..TT-SGGGHHHHHHHHHHHHHHHHHHHHHTT-EEEE----GG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh  10 krgvrlsldllgeavlteedadryleayleaiksiekaskalkvleapgvsvklsa..prletaeeeevmeelverlrtlakeakelgvrlliDaEeak 106
                 ++g+ +sldllge +l+ +d  r+ e+++++++ ++  +  +  +++p++svklsa  +++e +  + ++e+++++l++l+  a e+g++l+iDaE++ 
  CCG92792.1 186 AQGIPISLDLLGEDALGSRDGTRHWEDCHKVVELLGMIKA-SFPQSDPEISVKLSAldSKYELPYGRISFERIYSKLKSLCLSAFEKGISLCIDAEQYF 283
                 468999*****************************99987.44589***********99**************************************** PP

                 GHHHHHHHHHHHHHSCCTTT---EEEEEETTBTTHHHHHHHHHHHHHHTTS-EEEEEE--S-HHHHHHHHHHTT-S.-SB-SSHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh 107 lqeltlelfrklnkepelkdwevvgntyQaYlkdalevlqkllelAeregfrlgvkLVrGAYldsErkraqelgye.spifdtkeeTDanYdavaelll 204
                 ++e +l+l+++l+++++l+d++++g+++Q Ylk++++ +++l el ++++++l ++LV+GAY+d+E+ r+q+lg+  +p+++ ke T  +Y a++++l 
  CCG92792.1 284 RLEFSLDLLENLLSDRDLEDYNKLGFVVQSYLKNSESLIDYLGELCKEKKRKLSIRLVKGAYWDHEIIRSQSLGLGhYPVYTLKELTELSYMACVSKLY 382
                 ****************************************************************************9********************** PP

                 HTTTTEEEEEE-S-HHHHHHHHHHHHHT..T--GGGEEEEEETTSSHHHHHHHHHTTS-EEEEEEECEHHHHHHHHHHHHHHHH-TT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh 205 enrdeiypavAsHNaesvakalalaeelgqekeksevefqqLlGMadnlsfalakagynvrkYlPvGpveevlpYLvRRleENtans 291
                 e+r+ ++  +A+HN  ++a++l+   ++    +++++efq+L+G+++++ + l+++g++ r+Y+P+G+ +e+  YL RRl EN+a +
  CCG92792.1 383 EQRELLSTRIATHNPATIAAVLEFYISR----KENRIEFQRLYGLGEAVENWLKRQGFPTRVYIPIGTGKELFGYLARRLIENGAGL 465
                 ************************9999....999************************************************9865 PP

>> Pro_dh-DNA_bdg  DNA-binding domain of Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   2.1e-13   9.6e-10       3      59 ..      71     127 ..      69     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 2.1e-13
                     HHHHHHTT--HHHHHHHHHHHHHHHTSSSHHHHHHHHHHTTTTS-HHHHHHHHHHCT CS
  Pro_dh-DNA_bdg   3 eallqeyslsseEGvaLmcLAEaLLRvPdaatadaLirdklakgdwkehlgksesll 59 
                     eal + y l+ +EG++L++LAEaL R+P+++ta  L ++ +++g+w++   ++ + +
      CCG92792.1  71 EALTKAYPLNRTEGLLLLRLAEALPRMPNDETALLLFKEAIRRGNWQNTDRNQWTSF 127
                     7899*******************************************9877654443 PP

>> Tn7_Tnp_TnsA_C  TnsA endonuclease C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0027        12      13      71 ..      37      89 ..      34      91 .. 0.88
   2 ?    0.5   0.0      0.22   9.7e+02      29      64 ..     216     250 ..     207     252 .. 0.84
   3 ?    0.1   0.0      0.29   1.3e+03      29      53 ..     381     405 ..     369     407 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0027
  Tn7_Tnp_TnsA_C 13 lhpyrriedddlseeeleelaelllerlrenpdttlrellkelDkeyslergtsLplir 71
                    ++++++    dls  e++++ +++l+ +  +++++l e l++    y l+r ++L l+r
      CCG92792.1 37 IYSFQK---LDLSVPEINNRLNSMLQYIGLHQKRSLAEALTKA---YPLNRTEGLLLLR 89
                    677776...68999*****************999999999988...9999999999988 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.22
  Tn7_Tnp_TnsA_C  29 leelaelllerlrenpdttlrellkelDkeyslerg 64 
                       el   + +++ ++ d  ++  l+ lD +y+l+ g
      CCG92792.1 216 VVELLGMIKASFPQS-DPEISVKLSALDSKYELPYG 250
                     567778889999999.999999***********988 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.29
  Tn7_Tnp_TnsA_C  29 leelaelllerlrenpdttlrellk 53 
                     l e++ell+ r++++ + t+ ++l+
      CCG92792.1 381 LYEQRELLSTRIATHNPATIAAVLE 405
                     56899***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1023 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.43
# Mc/sec: 7105.41
//
Query:       CCG92793.1  [L=473]
Description: TPR repeats containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-16   60.0   0.0    9.6e-12   45.4   0.0    2.8  3  Asp_protease_2   Aspartyl protease
    2.4e-12   47.2   0.0    1.8e-09   38.0   0.0    2.5  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease
    8.7e-08   32.7   0.0    2.4e-07   31.3   0.0    1.8  1  TPR_16           Tetratricopeptide repeat
    1.9e-06   27.6   0.0     0.0011   18.9   0.0    2.7  2  TPR_2            Tetratricopeptide repeat
    2.1e-06   28.1   0.2        0.1   13.4   0.0    2.5  2  TPR_14           Tetratricopeptide repeat
      0.002   18.1   0.1       0.59   10.2   0.0    2.3  2  Fis1_TPR_C       Fis1 C-terminal tetratricopeptide repeat
     0.0026   17.5   0.0      0.026   14.4   0.0    2.3  2  TPR_1            Tetratricopeptide repeat
     0.0081   16.4   0.1      0.014   15.6   0.1    1.5  1  ANAPC3           Anaphase-promoting complex, cyclosome, subun
  ------ inclusion threshold ------
      0.021   15.4   0.0        3.5    8.5   0.0    2.5  2  TPR_6            Tetratricopeptide repeat
      0.051   14.1   0.1        3.4    8.2   0.1    2.3  2  TPR_19           Tetratricopeptide repeat
       0.06   13.6   0.0       0.31   11.4   0.0    2.3  2  TPR_8            Tetratricopeptide repeat
      0.065   13.5   0.1       0.56   10.5   0.1    2.2  1  TPR_12           Tetratricopeptide repeat
      0.083   13.0   0.2       0.71   10.1   0.0    2.0  2  TPR_9            Tetratricopeptide repeat
      0.093   11.8   0.0       0.15   11.1   0.0    1.2  1  Coatomer_WDAD    Coatomer WD associated region
       0.24   10.1   0.0       0.39    9.4   0.0    1.2  1  PknG_TPR         Protein kinase G tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0     8e-15   9.6e-12       6      90 .]     183     270 ..     177     270 .. 0.88
   2 ?   -2.7   0.0         8   9.6e+03      57      77 ..     303     323 ..     298     327 .. 0.82
   3 !   11.4   0.0   0.00031      0.37       1      31 [.     329     360 ..     329     370 .. 0.85

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 8e-15
  Asp_protease_2   6 nGkpvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrldslklggltlknvpalvld......lgeeidglLGmdf 90 
                     +G ++rf++DTG++++++sp+la+k+++k  ++e  +  s+  g+   ++++++s+++gg+t++n+pa++         g eidg+LG +f
      CCG92793.1 183 GGIKARFMIDTGSTYVILSPRLANKAQMKLFRKE--KETST-MGSYWIQFGKIHSMNIGGATIRNIPAVIHSllaiprTGLEIDGILGENF 270
                     4679*************************99985..45444.568899**********************99999999999*******765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 8
  Asp_protease_2  57 rldslklggltlknvpalvld 77 
                      l+sl+l + +++ +p+l+ +
      CCG92793.1 303 SLKSLSLSSGRIRVIPFLIGP 323
                     688999999999999999988 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00031
  Asp_protease_2   1 vpvtinGk.pvrfllDTGasttlispelaekl 31 
                     v+++in+  p+ fllDTG  + ++ + l++kl
      CCG92793.1 329 VQGKINNSvPLLFLLDTGTPGYFLCSPLVAKL 360
                     789**9966**********9888877777776 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   1.5e-12   1.8e-09       7      92 .]     184     273 ..     177     273 .. 0.79
   2 !    6.8   0.0    0.0084        10       1      30 [.     329     359 ..     329     376 .. 0.82

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 1.5e-12
                      TEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEEEEEE.EETTEEEEEEEEEESS...SSE.....EEEHHHHHH CS
  gag-asp_proteas   7 gkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrvrldsvkiggielrnvsavvlegel...ddl.....LLGldfLkr 92 
                      g + +f++DTG + +i+s++la++++++  ++  + e     g+  ++ ++++s++igg+++rn++av+ +  +   + +     +LG +fL++
       CCG92793.1 184 GIKARFMIDTGSTYVILSPRLANKAQMKLFRK--EKET-STMGSYWIQFGKIHSMNIGGATIRNIPAVIHSLLAiprT-GleidgILGENFLSH 273
                      4499**********************999985..3344.44566777778*****************99986644441.245555*******86 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0084
                      EEEEETTE.EEEEEEETT-SS-EEEHHHHHH CS
  gag-asp_proteas   1 vkvkingk.pvkflvDTGAsstiiseelaer 30 
                      v++kin+  p+ fl+DTG    ++ + l+ +
       CCG92793.1 329 VQGKINNSvPLLFLLDTGTPGYFLCSPLVAK 359
                      6899**999*********9877776666655 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0     2e-10   2.4e-07       4      66 ..      49     108 ..      46     110 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2e-10
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                  + ++r+g++++A ++++ +l  +   P +   ++  g++al +g+l++A+ ++++ l+  p 
  CCG92793.1  49 LNVLYRSGRFEEATRMARSLLQEH---PSCFSCWMIIGESALCRGNLELARKAFERVLKIRPE 108
                 6789********************...*****************************9999885 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.012        14       9      32 ..      50      73 ..      50      75 .. 0.84
   2 !   18.9   0.0   9.6e-07    0.0011       3      33 ..      78     108 ..      76     109 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.012
       TPR_2  9 layyklgdyeeAleafekAleldP 32
                +++y++g++eeA +  +  l+  P
  CCG92793.1 50 NVLYRSGRFEEATRMARSLLQEHP 73
                589*********998888888777 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 9.6e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 +++ +G++++ +g++e A++afe++l++ P+
  CCG92793.1  78 CWMIIGESALCRGNLELARKAFERVLKIRPE 108
                 68999***********************996 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   8.7e-05       0.1       7      33 ..      48      74 ..      43      80 .. 0.87
   2 !   12.7   0.0   0.00015      0.18       4      36 ..      79     111 ..      76     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.7e-05
      TPR_14  7 laeallalGdpdeAiallrralalaPd 33
                 + +l+++G+++eA +++r +l+ +P+
  CCG92793.1 48 QLNVLYRSGRFEEATRMARSLLQEHPS 74
                5789**********************7 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00015
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddae 36 
                 ++ ++e  l +G+++ A+++++r+l+  P++++
  CCG92793.1  79 WMIIGESALCRGNLELARKAFERVLKIRPEERR 111
                 7888999999*******************9876 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00049      0.59      12      34 ..      53      75 ..      52      77 .. 0.94
   2 ?    5.5   0.1     0.015        18      15      44 ..      90     119 ..      89     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00049
                HHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C 12 yklgeYseArryvdalLeiEPen 34
                y+ g+++eA r ++ lL+ +P++
  CCG92793.1 53 YRSGRFEEATRMARSLLQEHPSC 75
                9********************85 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.015
                 T-HHHHHHHHHHHHHHTTS-HHHHHHHHHH CS
  Fis1_TPR_C  15 geYseArryvdalLeiEPenrQaqsLkeli 44 
                 g+ + Ar+  +++L+i Pe r  ++L + i
  CCG92793.1  90 GNLELARKAFERVLKIRPEERRPKALLKEI 119
                 78999**************99998888766 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.62   7.4e+02       9      20 ..      50      61 ..      50      73 .. 0.91
   2 !   14.4   0.0   2.2e-05     0.026       3      33 ..      78     108 ..      76     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.62
                HHHHHTT-HHHH CS
       TPR_1  9 nayfklgkydeA 20
                n++++ g+++eA
  CCG92793.1 50 NVLYRSGRFEEA 61
                689999*****9 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                 ++  +G   +  g+++ A +++e++L+++P+
  CCG92793.1  78 CWMIIGESALCRGNLELARKAFERVLKIRPE 108
                 58889999999******************96 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.2e-05     0.014      21      81 ..      40     101 ..      13     102 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
                 --HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  21 espedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                    ++a     +ly++g++++A + +r++ ++ ++   c++++++++l  +++e A++a+e+
  CCG92793.1  40 SEQQAAEQQLNVLYRSGRFEEATRMARSLlQEHPSCFSCWMIIGESALCRGNLELARKAFER 101
                 344444455689*****************99999999***********99999999999986 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.059        70       9      31 ..      52      73 ..      43      74 .. 0.85
   2 ?    8.5   0.0    0.0029       3.5       7      32 ..      83     108 ..      78     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.059
                HHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6  9 syrklgdtdkAlealerlikeYP 31
                +yr++ + ++A ++ ++l++e+P
  CCG92793.1 52 LYRSG-RFEEATRMARSLLQEHP 73
                35555.****************9 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0029
                 HHHHH.HHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   7 alsyr.klgdtdkAlealerlikeYPd 32 
                 ++s + ++ + + A++a+er++k  P+
  CCG92793.1  83 GESALcRG-NLELARKAFERVLKIRPE 108
                 55555345.9*************9995 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.09   1.1e+02      34      56 ..      51      73 ..      40      80 .. 0.75
   2 ?    8.2   0.1    0.0028       3.4       4      44 ..      89     129 ..      86     132 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.09
      TPR_19 34 allalgqldeAealLdalpeedp 56
                +l+ +g+++eA ++   l++e p
  CCG92793.1 51 VLYRSGRFEEATRMARSLLQEHP 73
                56777777777777766666665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0028
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeA 44 
                 +g+++ A +++e++l+  p+  + ++lL e+++   ++  A
  CCG92793.1  89 RGNLELARKAFERVLKIRPEERRPKALLKEIYIREDRYSLA 129
                 699999****************************9999766 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       8.6     1e+04      12      20 ..      53      61 ..      49      66 .. 0.73
   2 ?   11.4   0.0   0.00026      0.31       4      33 ..      79     108 ..      76     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 8.6
                HHTT-HHHH CS
       TPR_8 12 lklgdyeeA 20
                   g++eeA
  CCG92793.1 53 YRSGRFEEA 61
                567888888 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00026
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++ +g   l  g++e A +++e++l+++p+
  CCG92793.1  79 WMIIGESALCRGNLELARKAFERVLKIRPE 108
                 566666666679****************97 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00047      0.56      26      76 ..      58     107 ..      44     108 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00047
      TPR_12  26 lekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +e+a ++ar+ll  +hp   ++   +g+  + +g++e A++++e++l+i++
  CCG92793.1  58 FEEATRMARSLL-QEHPSCFSCWMIIGESALCRGNLELARKAFERVLKIRP 107
                 666777776665.5699999999999999999***************9986 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00059      0.71       4      63 ..      51     110 ..      48     117 .. 0.90
   2 ?    0.8   0.0      0.45   5.4e+02       1      14 [.     116     129 ..     116     133 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00059
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdap 63 
                 ++ r+ ++e+a +++ +ll+ +P   + ++  G     +G+l+ A++++e+ l + p+ +
  CCG92793.1  51 VLYRSGRFEEATRMARSLLQEHPSCFSCWMIIGESALCRGNLELARKAFERVLKIRPEER 110
                 567899***********************************************9999544 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.45
       TPR_9   1 lkaiaireedwera 14 
                 lk+i+ire++++ a
  CCG92793.1 116 LKEIYIREDRYSLA 129
                 89********9877 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.15     333     374 ..      55     101 ..      42     105 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                    TT-HHHHHHHHHHH--HH.....HHHHHHHHHHHTT-HHHHHHHHHH CS
  Coatomer_WDAD 333 lgnLelAlelakelddee.....kWkkLgdaAlsqgniklaeeayqk 374
                    +g++e+A  +a+ l +e+     +W  +g+ Al  gn++la +a+++
     CCG92793.1  55 SGRFEEATRMARSLLQEHpscfsCWMIIGESALCRGNLELARKAFER 101
                    7899*************9**************************987 PP

>> PknG_TPR  Protein kinase G tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00033      0.39     107     166 ..      55     114 ..      37     125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00033
                 CT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-SHHHH CS
    PknG_TPR 107 lGdveearelLdeleeeveedWrldWyrglaeLlegdyeeAaaeFdevlaalpGEiaPkl 166
                  G  eea+++ ++l +e+++ +      g ++L  g++e A+++F++vl++ p E  Pk 
  CCG92793.1  55 SGRFEEATRMARSLLQEHPSCFSCWMIIGESALCRGNLELARKAFERVLKIRPEERRPKA 114
                 6888899999999999999888887789******************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3144.58
//
Query:       CCG92794.1  [L=237]
Description: Short-chain alcohol dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-59  198.5   1.0    9.2e-59  198.2   1.0    1.0  1  adh_short       short chain dehydrogenase
      5e-47  160.4   0.5    3.2e-45  154.5   0.2    2.0  2  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
      1e-10   41.9   0.1    1.3e-10   41.4   0.1    1.1  1  KR              KR domain
       0.01   15.9   0.0      0.017   15.1   0.0    1.3  1  Viral_cys_rich  Viral cysteine rich
  ------ inclusion threshold ------
      0.051   13.0   0.0        0.3   10.5   0.0    1.9  2  Epimerase       NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.2   1.0   2.6e-62   9.2e-59       1     188 [.       9     198 ..       9     201 .. 0.98

  Alignments for each domain:
  == domain 1  score: 198.2 bits;  conditional E-value: 2.6e-62
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 k+++vtGa sGIG++ia++l ++Ga+vv+++r+ e  ++va e++ +  ak l++++Dv+++e++ +l+ + v+ +g++d+LvnNAGi   +p  els 
  CCG92794.1   9 KIAIVTGANSGIGKEIAYALSASGASVVIASRRMELNQQVALEIETKtFAKTLPLEIDVSKEESCIRLITETVNCFGRIDILVNNAGIGIYAPLDELST 107
                 79*********************************************9899************************************************ PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  99 eewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                   ++r++++Nl g+f+++r+++++m+ +q +G I+n+sS ag +++a++a YsAsK++v glt+++a+e ++++i+v+a++PG+v+T+m+ 
  CCG92794.1 108 LSFDRMLKTNLYGTFWCSREAFKQMKkQQTGGYIINISSLAGVEAWANTAGYSASKFGVMGLTKAMADEGKRYNIKVTAICPGMVATPMTG 198
                 **************************778899*********************************************************85 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   0.2   8.9e-49   3.2e-45       1     179 [.      15     197 ..      15     203 .. 0.95
   2 !    4.4   0.0    0.0065        23     202     217 ..     205     220 ..     200     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 154.5 bits;  conditional E-value: 8.9e-49
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   Ga sgIG++iA al + Ga+vv++ ++ e+ ++ + e+++++ a+ + le+DV++ee++ +l+ e+v+ fg++Dilvnnagi     +p+ e+s  +
    CCG92794.1  15 GANSGIGKEIAYALSASGASVVIASRRMELnQQVALEIETKTFAKtLpLEIDVSKEESCIRLITETVNCFGRIDILVNNAGIGIY--APLDELSTLS 109
                   899***************************777788888888888449*************************************..********** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSC...CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGG CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeg...gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaa 179
                   fdr+l++nly++f ++++a + mk++   g i+n+ss+++  +++n++ y+a+K ++ +lt+++A e  +++i+v a++pg+++T+++
    CCG92794.1 110 FDRMLKTNLYGTFWCSREAFKQMKKQqtgGYIINISSLAGVEAWANTAGYSASKFGVMGLTKAMADEGKRYNIKVTAICPGMVATPMT 197
                   *********************99888899*********************************************************96 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0065
                   B-HHHHHHHHHHHCSG CS
  adh_short_C2 202 gtpeevaeaalfLasd 217
                   ++pe++a+++l+L+s 
    CCG92794.1 205 IQPEDIAQTVLYLLSL 220
                   69************94 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.1   3.7e-14   1.3e-10       4     152 ..      12     162 ..      10     192 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 3.7e-14
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 ++tG+  g+G+e+a  l ++ga+ +v+ sR+ + +++      e+e +  a+   +++Dvs++++  +l++e  + +++i   ++ Ag+   ++l+e++
  CCG92794.1  12 IVTGANSGIGKEIAYALSASGAS-VVIASRRMELNQQV---ALEIETKtFAKTLPLEIDVSKEESCIRLITETVNCFGRIDILVNNAGIGIYAPLDELS 106
                 89*******************96.77889995544444...45555553789999******************************************** PP

                 HHHHHHHHTTTTHHH.HHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHH CS
          KR 102 aedleqvlapKvkGa.wnLhelled....esldffvlfSSiagllgsagqanYaaa 152
                 + +++++l+  + G+ w   e++++    ++  +++ +SS+ag+   a  a Y+a 
  CCG92794.1 107 TLSFDRMLKTNLYGTfWCSREAFKQmkkqQTGGYIINISSLAGVEAWANTAGYSAS 162
                 **************8555566776665558889***************99999986 PP

>> Viral_cys_rich  Viral cysteine rich
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.8e-06     0.017      16      56 ..      70     110 ..      64     127 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.8e-06
  Viral_cys_rich  16 tkpcCrledrtlvqfGrkeficdrllgGicaPLsvinnatL 56 
                      ++c rl   t+  fGr + ++++ + Gi+aPL+ +  +  
      CCG92794.1  70 EESCIRLITETVNCFGRIDILVNNAGIGIYAPLDELSTLSF 110
                     57888****************************99876655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   8.5e-05       0.3       2      62 ..      12      79 ..      11     100 .. 0.77
   2 ?    0.5   0.0     0.098   3.5e+02      55     157 ..     128     174 ..     102     198 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.5e-05
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfke 62
                +VtGa+  iG+ ++ al + g  v+  +r+ + +++ +le +           e+d+ +++++ rl+ e
  CCG92794.1 12 IVTGANSGIGKEIAYALSASGASVVIASRRMELNQQVALE-IetktfaktLPLEIDVSKEESCIRLITE 79
                8**********************99999995544444333.2477788766678888888888888775 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.098
                 HHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHH CS
   Epimerase  55 alerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklv 153
                 a++++ k++   ++i++   +gv+a+++++                                                         Y+a+K  +  l+
  CCG92794.1 128 AFKQMKKQQTGGYIINISSLAGVEAWANTAG--------------------------------------------------------YSASKFGVMGLT 170
                 5555555555555555555555555555444........................................................444444444444 PP

                 HHHH CS
   Epimerase 154 eaya 157
                 +a+a
  CCG92794.1 171 KAMA 174
                 4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1773.41
//
Query:       CCG92795.1  [L=197]
Description: 5-formyltetrahydrofolate cyclo-ligase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-36  124.9   0.0    3.8e-36  124.7   0.0    1.0  1  5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family


Domain annotation for each model (and alignments):
>> 5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.7   0.0   2.1e-40   3.8e-36       1     187 []      10     187 ..      10     187 .. 0.96

  Alignments for each domain:
  == domain 1  score: 124.7 bits;  conditional E-value: 2.1e-40
                     HHHHHHHHHH.HHHTS-HHHHHHHHHHHHHHHHTSHHHHH-SEEEE----TTS---HHHHHHHHHTTEEEEEEEECSSCTEECEEEEEECCCCCC CS
  5-FTHF_cyc-lig   1 KqelRkqlla.alralseeevaaesealsqrieslkesqeakrvalyvsvkgeidtkelikklleegkevllPrvrlesgslkvvrlttlkeeds 94 
                     Kq  R+ l+  ++  l+ee++++ s ++++r+ s++ +q+a+ v+ly s++ e+dt+ +++ +   +k+vl P+v  ++     + + +++++++
      CCG92795.1  10 KQVQRRLLKSkVMGCLREEDRKKASIEITHRLCSHPVWQDARVVSLYSSLPSEPDTSDIFRLAKASKKKVLFPKVVGKQ-----LLFFEVEKKED 99 
                     667777777658899****************************************************************.....99999****** PP

                     CCCHCTSSCE--TTECCBCGGGG-SEEEE--SEEETTS-EE-SSTTHHHHHHHHHTST-SS--EEEEE--GGGEES-----ST----SEEE-S CS
  5-FTHF_cyc-lig  95 lesgkyglkePeeeeerelalekldlvlvPgvAfdkeGaRlGkGkGyyDrflarlkggagdkpltvglaldeqlverlPleehDvpvdevvte 187
                     le++ +g++eP+++  + l+ +++dl+lvPg++fd++G RlG+G G yDr l++l      k   +gl +++q + ++ +e+hD+++d ++te
      CCG92795.1 100 LEKNFMGIMEPKASCIEVLS-QDMDLILVPGIGFDRQGQRLGRGLGLYDRCLSTLPS----KVCRIGLYFSFQEIHKIYTEPHDQRLDLIITE 187
                     ***************99996.6***********************************....******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1529.37
//
Query:       CCG92796.1  [L=51]
Description: hypothetical protein MFUM_800010 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 384.51
//
Query:       CCG92797.1  [L=228]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-30  103.4   0.0    9.6e-30  103.0   0.0    1.2  1  Ysc84     Las17-binding protein actin regulator


Domain annotation for each model (and alignments):
>> Ysc84  Las17-binding protein actin regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   5.4e-34   9.6e-30       2     127 ..     104     223 ..     103     224 .. 0.92

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 5.4e-34
       Ysc84   2 gvgaGfqiGvdiydcvlvlntkealeaftkktrvslGgdlsvaaGpvgaggeaeaaaaaklkapvysysksrGlyaGvsldgtviterkdaNaafYgek 100
                 g+g+G+q+G + +d+v++ln+++a+++f+++++v+l g++s +aGp  +  ++        k+++y+y  ++Gl++G++l+g  i e++++N+++Y+++
  CCG92797.1 104 GIGVGLQVGGTKTDYVIILNSDKAVRQFSRGGKVHLTGEMSGVAGPESERQALIK-----PKSNIYTYRSTEGLFGGIALQGIEIREEPEVNERYYHRA 197
                 89********************************************554444332.....4689*********************************87 PP

       Ysc84 101 gvsveqILrgevpwpaaakeLlevlka 127
                  vs+++I++g+v++p++a+ L+++l++
  CCG92797.1 198 -VSPSEIFSGQVQPPKSAQSLIDTLNE 223
                 .***********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1844.96
//
Query:       CCG92798.1  [L=184]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1407.82
//
Query:       CCG92799.1  [L=47]
Description: hypothetical protein MFUM_800013 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.017   14.4   0.5      0.018   14.4   0.5    1.0  1  Far-17a_AIG1  FAR-17a/AIG1-like protein


Domain annotation for each model (and alignments):
>> Far-17a_AIG1  FAR-17a/AIG1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.5     1e-06     0.018      59      89 ..      14      44 ..       2      45 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-06
  Far-17a_AIG1 59 eltlsallklrdnllavlafPvevlvsvlFW 89
                  ++tl+ l+ +    + v+ fP  ++++ l+W
    CCG92799.1 14 HYTLKILRIFPNHNFYVCIFPFTFFIISLYW 44
                  48999999999999***************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 350.95
//
Query:       CCG92800.1  [L=68]
Description: hypothetical protein MFUM_800014 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 498.48
//
Query:       CCG92801.1  [L=55]
Description: hypothetical protein MFUM_800016 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       158  (0.00881254); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 423.91
//
Query:       CCG92802.1  [L=81]
Description: hypothetical protein MFUM_800017 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 666.99
//
Query:       CCG92803.1  [L=1696]
Description: putative Transcription elongation factor GreA/GreB domain protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-29   99.5   0.9    2.4e-28   98.1   0.9    1.8  1  MTES_1575        REase_MTES_1575
    3.4e-19   69.3   0.0    2.1e-18   66.7   0.0    2.3  1  AAA_12           AAA domain
    2.4e-14   53.7   0.0    6.3e-08   32.7   0.0    2.5  2  AAA_11           AAA domain
    5.2e-13   49.2   0.4    4.6e-08   33.0   0.0    3.0  2  AAA_30           AAA domain
      4e-08   33.7   0.0    7.8e-05   23.0   0.0    2.7  2  AAA_19           AAA domain
    7.5e-08   32.2   0.1    2.2e-07   30.7   0.1    1.8  1  DUF559           Protein of unknown function (DUF559)
    0.00023   20.8   0.3     0.0013   18.3   0.0    2.3  3  UvrD-helicase    UvrD/REP helicase N-terminal domain
    0.00027   21.4   0.3    0.00027   21.4   0.3    4.4  4  AAA_16           AAA ATPase domain
    0.00029   20.7   0.1       0.89    9.2   0.0    2.9  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00037   20.4   0.0     0.0065   16.3   0.0    2.4  2  Helicase_RecD    Helicase
    0.00094   19.5   0.2     0.0086   16.4   0.0    2.6  2  AAA_22           AAA domain
     0.0014   17.7   0.0     0.0033   16.4   0.0    1.6  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
  ------ inclusion threshold ------
      0.015   14.5   0.0      0.033   13.4   0.0    1.5  2  PIF1             PIF1-like helicase
      0.018   14.6   0.1       0.19   11.3   0.0    2.8  2  AAA_25           AAA domain
      0.023   14.2   0.0      0.068   12.6   0.0    1.8  1  PhoH             PhoH-like protein
      0.042   13.7   3.3      0.045   13.6   0.1    2.6  3  DUF241           Arabidopsis protein of unknown function
      0.069   12.1   0.0       0.12   11.3   0.0    1.3  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
      0.075   12.4   0.0       0.19   11.1   0.0    1.6  1  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.075   13.5   0.1       0.35   11.4   0.0    2.1  2  ABC_tran         ABC transporter
       0.08   12.7   0.1       0.18   11.5   0.1    1.5  1  IstB_IS21        IstB-like ATP binding protein
      0.092   12.7   0.1        0.9    9.5   0.0    2.5  2  AAA_5            AAA domain (dynein-related subfamily)
       0.11   11.8   0.0       0.45    9.8   0.0    2.0  3  UvrD_C           UvrD-like helicase C-terminal domain
       0.21   11.7   0.0       0.63   10.1   0.0    1.9  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai


Domain annotation for each model (and alignments):
>> MTES_1575  REase_MTES_1575
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.9   3.1e-31   2.4e-28       1      93 [.    1376    1466 ..    1376    1468 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 3.1e-31
   MTES_1575    1 FeeeVaeaLrergykvkpqvgvggfriDlvvedpgkyllaIecdgdkyhsskeardrdierqevLerlGWkilRiwssdwyrnpeeeleklve 93  
                  Fe +Va +L +  y+++pqv+v+++riDlvve+  + +laIecdg+++h+  e++drd++rq+ Ler+GW+++R+++sd+y +++++l+ + e
  CCG92803.1 1376 FEVDVALELLRCRYRIRPQVKVANYRIDLVVEGI-EARLAIECDGEEWHG-LEQYDRDMKRQRQLERAGWRFVRVRESDFYADRQRALATVLE 1466
                  9*********************************.***************.8***********************************998876 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   2.7e-21   2.1e-18       2     195 ..    1133    1318 ..    1132    1321 .. 0.82

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 2.7e-21
      AAA_12    2 erSlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekkeksyiNeeEaelvvkl 98  
                  + Slf++  +    + + L++ +R+ peI rf+++l Y++    a+ +  r+ +     +e l+pl    v + +   e   ++++N++Eae++v++
  CCG92803.1 1133 DSSLFDHAERTF-GSHISLREHFRCVPEIIRFSNDLCYRD----APLIPLRQAP-----PERLKPLRSRFVAEGSCVGEG--QRIVNRAEAEALVET 1217
                  789999999998.9999*********************95....4555555555.....344444433333333333333..689************ PP

      AAA_12   99 vekllkkgseeerkkigvitpY.raqvellkkklkekeeekseke..ievntvdgfQGrekdviilslVRsn..ekkeigflkderrlNValTRAks 190 
                  v  l+++ + e  k igvi+   +aq +l+ + l+++ e +  +e  ++++    fQG e+dvi+lslV s   +++ +  l+++rr+NVa++RA++
  CCG92803.1 1218 VVGLVNDKNYE-GKTIGVIALQgHAQSQLIDSLLAQRLEPRVIEErrLRCGEPAMFQGDERDVIFLSLVISPnvHSRALTRLSEQRRFNVAMSRARD 1313
                  *********99.8*******86479**********999887665577************************7455666889**************** PP

      AAA_12  191 kliiv 195 
                  +++++
  CCG92803.1 1314 QVWLF 1318
                  **985 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   8.1e-11   6.3e-08       2     140 ..     378     497 ..     377     551 .. 0.63
   2 !   18.3   0.0     2e-06    0.0016     150     253 ..    1000    1100 ..     929    1104 .. 0.67

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 8.1e-11
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneeeri 100
                 +n++q++ +++  + s  +l++GPPGtgK++ti+ l+ +l          +++ r+Lv+a+  +A  +l   l +         +++ +  +g++    
  CCG92803.1 378 YNEEQKQIVQRLQTGSC-VLVKGPPGTGKSHTIANLICHL---------LARGDRVLVTAHAAKALAVLRGLLPS-------DIQDLCVTALGSSR--E 457
                 7999*999999888885.9*********************.........799**************999998877.......33334444444444..2 PP

      AAA_11 101 seavksvsleekvekrlekeekaqlakeiskeleklakel 140
                 ++++ + s+  ++++  e   + + ++ i++++++l++  
  CCG92803.1 458 DQRLLEDSVHGILRRMNEWPGSEAAHRAIQEAEADLRALE 497
                 4444444444444444333334444555555555554444 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 2e-06
      AAA_11  150 eklkkskekskskleqerrklkkerkelskeleeaeesleeevldeaeivltTlsgagsklleklakkfdvviIDEAaqavEpstliPlrlgakkvv 246 
                  ++l++   +s + ++++ + + k   ++  + +++ +++ ++++ +    +  l++   ++ +++ + f++v++DEA+qa  + +l+ l+l+ k++v
  CCG92803.1 1000 DRLDERTIQSLNAWTKTVERIGKGTGKHAHKNRRTARRYLKDCVPRIPAWIMPLHKL-WASVDAVPGLFETVVVDEASQAG-IDALVLLLLA-KRIV 1093
                  666666666666666666666666666666666666666666666666666666665.3344555668************6.7778888888.9*** PP

      AAA_11  247 LvGDpkQ 253 
                   vGD kQ
  CCG92803.1 1094 VVGDDKQ 1100
                  ******* PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   5.9e-11   4.6e-08       2      64 ..     378     438 ..     377     490 .. 0.84
   2 !   12.9   0.1   8.4e-05     0.065      52     130 ..    1010    1103 ..     986    1109 .. 0.62

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 5.9e-11
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLae 64 
                 +n+eQ+++v++l t++  +++++Gp+GtGK+++++ l  ++ a+g rv++ A+ +ka +vL+ 
  CCG92803.1 378 YNEEQKQIVQRLQTGS--CVLVKGPPGTGKSHTIANLICHLLARGDRVLVTAHAAKALAVLRG 438
                 79*********99998..8***************************************99983 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 8.4e-05
      AAA_30   52 lAptgkaAkvLaeelgieastiakllkrlk..................grarlepg..tllivDEagmvdtkqlaallkaaekagakvilvGDerQl 128 
                  l    k  +++++++g +a+   +  +r+                   + ++  pg  + ++vDEa+ ++++ l  ll  a+    ++++vGD++Q 
  CCG92803.1 1010 LNAWTKTVERIGKGTGKHAHKNRRTARRYLkdcvpripawimplhklwASVDAVPGlfETVVVDEASQAGIDALVLLL-LAK----RIVVVGDDKQN 1101
                  555555555566555543333333332222444577777777777777334444555799**********98776554.443....6*********9 PP

      AAA_30  129 as 130 
                  ++
  CCG92803.1 1102 SP 1103
                  86 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     1e-07   7.8e-05       1      60 [.     382     438 ..     382     535 .. 0.89
   2 !    7.7   0.0    0.0055       4.3     104     143 ..    1068    1103 ..     983    1105 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1e-07
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelre 60 
                 q+++v+   + +++lv ++pGtGK++++   + +l+++g    +++l+ a + +A   lr 
  CCG92803.1 382 QKQIVQrLQTGSCVLVKGPPGTGKSHTIANLICHLLARG----DRVLVTAHAAKALAVLRG 438
                 7899987888999**************************....789999999999988875 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0055
      AAA_19  104 ellivDEfqdvdelqyrLlkallgekkklllvGDpdQliy 143 
                  e+++vDE+++    +  Ll  ll  +k++++vGD++Q+ +
  CCG92803.1 1068 ETVVVDEASQAGIDALVLL--LL--AKRIVVVGDDKQNSP 1103
                  389******9876555554..44..346*********865 PP

>> DUF559  Protein of unknown function (DUF559)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1   2.8e-10   2.2e-07      32     108 ..    1388    1468 ..    1356    1469 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 2.8e-10
                  T--EEEEEEETTEEEEEEET..TTTEEEEEE-------..----HHHHHHHHHTT-EEEEEEHHHHHH-HHHHHHHHHHHH CS
      DUF559   32 glkfrRqkpigsYivDfvcl..kaklivelDGaqhdee..eeyDaeRtelLeslGftvlRfkndevlknieevleeilkal 108 
                   ++ r q+ + +Y +D v +  +a+l +e DG + ++    ++D++R++ Le+ G++ +R +  +  ++ ++ l+++l+a+
  CCG92803.1 1388 RYRIRPQVKVANYRIDLVVEgiEARLAIECDGEEWHGLeqYDRDMKRQRQLERAGWRFVRVRESDFYADRQRALATVLEAC 1468
                  578999***********9753399********98765412677899****************************9999987 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.7e-06    0.0013       2      67 ..     379     442 ..     378     477 .. 0.82
   2 ?   -2.9   0.1         5   3.9e+03      88     139 ..     966    1017 ..     939    1040 .. 0.52
   3 ?   -1.1   0.0       1.4   1.1e+03     259     294 ..    1069    1100 ..    1061    1101 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.7e-06
                    SHHHHHHHHS..-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH CS
  UvrD-helicase   2 npeqreaias..lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee 67 
                    n+eq+++++   +g+ +lv   +G+GK++++a++i +l++ +    dr+lv     kA + l+  + +
     CCG92803.1 379 NEEQKQIVQRlqTGSCVLVKGPPGTGKSHTIANLICHLLARG----DRVLVTAHAAKALAVLRGLLPS 442
                    78999999987788899*************************....9999999999998877766666 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5
                     HCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHHHHHCCHHHHHHHHH CS
  UvrD-helicase   88 nlseanisTlHsfcqkilkkeanrigldpnfrildeedeedlkqqellkell 139 
                     ++ e+ ++  H f +ki k+  + + l+     +d  de +++++++  + +
     CCG92803.1  966 SAYETRVQDYHRFKRKIEKATEKLASLRAWKAFFDRLDERTIQSLNAWTKTV 1017
                     4445555555555555555555555533333333333333344444433333 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.4
                     EEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase  259 eiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294 
                     ++ +DE+   +++ ++ l ll  ++  +++vGD+kQ
     CCG92803.1 1069 TVVVDEA---SQAGIDALVLLLLAK-RIVVVGDDKQ 1100
                     5566664...444444455555554.59******** PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.3   3.5e-07   0.00027      16     114 ..     386     499 ..     379     520 .. 0.58
   2 ?   -1.4   0.6       3.3   2.6e+03     134     134 ..     723     723 ..     599     819 .. 0.53
   3 ?   -2.3   0.9       6.6   5.2e+03      53      53 ..     952     952 ..     871    1101 .. 0.61
   4 ?   -0.3   0.0       1.6   1.2e+03      43     118 ..    1550    1635 ..    1546    1656 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3.5e-07
      AAA_16  16 lervrsgrpelvllsGesGvGKsslvrellralekdg.giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala....... 106
                 ++r+ +g  ++vl+ G++G+GKs  +  l  +l ++g  +++++++ +       +a+++ l   + +++l+  a  +++e +++ le+++        
  CCG92803.1 386 VQRLQTG--SCVLVKGPPGTGKSHTIANLICHLLARGdRVLVTAHAAKA------LAVLRGLLP-SDIQDLCVTALGSSRE-DQRLLEDSVHgilrrmn 474
                 5555566..89***************88887888886577788888888......677777766.8888888664443333.33333333333555444 PP

      AAA_16 107 .................avpelaga 114
                                  + ++l+g+
  CCG92803.1 475 ewpgseaahraiqeaeaDLRALEGE 499
                 4444443333222222233333333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.3
      AAA_16 134 e 134
                 +
  CCG92803.1 723 G 723
                 1 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 6.6
      AAA_16  53 g 53 
                 +
  CCG92803.1 952 W 952
                 1 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.6
      AAA_16   43 ellralekd.ggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala.........avpelagaeasr 118 
                  e+lr++ ++ g ++ +  ++ + ++ py++ + q+  r el r+l++++++ e  + +e  +++ +         ++ ++++a++++
  CCG92803.1 1550 EILRQIIERdGPLTRSSVYRLYVEGCPYLQrVGQTV-RQELNRALGAMLRAGEIVQEDELGDGSPEgqvvrikgtPAVNMRPAGRRD 1635
                  556555555146666666666688899999899999.77******999888777777776666655666666666555555555544 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0028       2.2       2      23 ..     396     422 ..     395     462 .. 0.69
   2 !    9.2   0.0    0.0011      0.89      61     103 ..    1065    1104 ..    1020    1148 .. 0.83
   3 ?   -1.8   0.0       2.6     2e+03     213     230 ..    1296    1315 ..    1255    1318 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0028
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts.....l 23 
                      +v+G pG GKS+ i +l+++      +
       CCG92803.1 396 LVKGPPGTGKSHTIANLICHLlargdR 422
                      79****************994333331 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0011
  Viral_helicase1   61 tkgkililDEylllhaGyilllaalskaklvilfGDplQipfh 103 
                         ++++++DE+ ++    i++l+ l  ak ++++GD +Q + +
       CCG92803.1 1065 GLFETVVVDEASQAG---IDALVLLLLAKRIVVVGDDKQNSPE 1104
                       4589*******9999...9**9*****************6543 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.6
  Viral_helicase1  213 s..esrenllvAlTRhrksl 230 
                       +  +++  + vA++R+r+++
       CCG92803.1 1296 TrlSEQRRFNVAMSRARDQV 1315
                       1344588899*******986 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.4e-06    0.0065       2      57 ..     397     451 ..     396     493 .. 0.82
   2 ?    1.2   0.0      0.38     3e+02      92     116 ..    1068    1092 ..    1006    1096 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.4e-06
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglke 57 
                    + + +G+GKS +++ ++ +l+a+g+ ++lvta   ++++ l   l + +++l ++ 
     CCG92803.1 397 VKGPPGTGKSHTIANLICHLLARGD-RVLVTAHAAKALAVLRGLLPSDIQDLCVTA 451
                    67899******************99.9************99998888888777766 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.38
  Helicase_RecD   92 dllvvDEAAaiplpllkkllekfkr 116 
                     +++vvDEA++  ++ l  ll +++ 
     CCG92803.1 1068 ETVVVDEASQAGIDALVLLLLAKRI 1092
                     89******99999988877744444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.1e-05    0.0086       3      88 ..     390     468 ..     387     515 .. 0.81
   2 ?   -1.2   0.0       2.9   2.3e+03      70     117 ..     541     602 ..     489     608 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-05
      AAA_22   3 ktagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalra 88 
                 +t ++++v G++GtGK++++++l   l +       r + v+vt+ + + ++ l+  l +++++ + ++ +ss+e  ++le+ ++ 
  CCG92803.1 390 QTGSCVLVKGPPGTGKSHTIANLICHLLA-------RGDRVLVTAHAAKALAVLRGLLPSDIQDLCVTALGSSREDQRLLEDSVHG 468
                 4789********************99975.......77889999999999999999999999999999666666666666666654 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.9
      AAA_22  70 a..............erlsseellealeqalrarav.ielliiDEaqhlrseealeeLrslln 117
                 +                 s+ ++l+ ++  l a  +   +l i +a+ l s++ +e+L ++++
  CCG92803.1 541 EfgwvsevsadapfpLDPSETDFLAEVHVGLTAGTRaELFLEIGDAELL-SPNEFEDLIERMK 602
                 4455555555555533344445557777777777667788999999999.9999999987766 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.3e-06    0.0033      22      64 ..     385     427 ..     365     431 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.3e-06
                 HGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEE CS
        MeaB  22 llakaGraqvvGltGvPGaGkstlvealglelrrrGkrvavla 64 
                 ++++      v + G PG+Gks ++ +l+++l +rG rv v a
  CCG92803.1 385 IVQRLQTGSCVLVKGPPGTGKSHTIANLICHLLARGDRVLVTA 427
                 44444445567789*************************9977 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.3e-05     0.033       3      63 ..     379     433 ..     377     443 .. 0.89
   2 ?   -3.9   0.0       7.4   5.8e+03     194     223 ..    1001    1030 ..     990    1034 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.3e-05
                 -HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEESSHHHH CS
        PIF1   3 neeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrsegkivlavAssGvAa 63 
                 neeQk+++++       + g  + v+G  GtgK+    +l+  l ++g+ vl++A +  A 
  CCG92803.1 379 NEEQKQIVQRL------QTGSCVLVKGPPGTGKSHTIANLICHLLARGDRVLVTAHAAKAL 433
                 78999999999......99************************************876554 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 7.4
                  ..........HHHHHHHHHHHCT---CCCC CS
        PIF1  194 sldetekkelkeFskwllkigdGkineede 223 
                   lde+  + l+ ++k + +ig+G+ +++++
  CCG92803.1 1001 RLDERTIQSLNAWTKTVERIGKGTGKHAHK 1030
                  567788899999*********998776655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00025      0.19      21      72 ..     381     433 ..     377     508 .. 0.89
   2 ?   -1.5   0.1         2   1.5e+03      84     141 ..     669     722 ..     644     730 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
      AAA_25  21 prrwlvkgllpagelallaGapgtGKttlaldlalava.tGkpwlg.pvapeqg 72 
                 +++++v++l   g+ +l+ G+pgtGK+    +l ++++ +G+ +l   +a +  
  CCG92803.1 381 EQKQIVQRL-QTGSCVLVKGPPGTGKSHTIANLICHLLaRGDRVLVtAHAAKAL 433
                 677888888.89***********************9998999877654444555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2
      AAA_25  84 delrrRlravgealrddarl.lvldlagveslpLfakdrggtlltadvdaleaaieeve 141
                 +++ rR++     l++ +rl  +++     ++ L +k++g++l  ad+++l a++e+  
  CCG92803.1 669 ARWTRRVADSEGLLTRAKRLiEAISS---ARIELPDKIAGDKL-RADIERLLAHLEA-G 722
                 45666666666666554444244443...46899999988877.689*****99998.4 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.7e-05     0.068       4      45 ..     377     418 ..     376     449 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.7e-05
                 --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHH CS
        PhoH   4 pktkeQkeylealkkndivfaiGpaGtGKtylavalavealk 45 
                 p ++eQk++++ l++ + v + Gp GtGK++    l  ++l 
  CCG92803.1 377 PYNEEQKQIVQRLQTGSCVLVKGPPGTGKSHTIANLICHLLA 418
                 5689*************************9876655555554 PP

>> DUF241  Arabidopsis protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.6   5.1e+03      28      47 ..     243     262 ..     238     270 .. 0.82
   2 ?   -1.5   0.1       2.3   1.8e+03     195     224 ..     475     507 ..     452     511 .. 0.73
   3 ?   13.6   0.1   5.8e-05     0.045      54     100 ..     942     991 ..     905    1018 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.6
      DUF241  28 eqqekwveelldgsLrllDv 47 
                 ++ + + +++ld++L+ lD+
  CCG92803.1 243 QHRPRLNKDMLDNYLETLDI 262
                 556778899**********9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.3
      DUF241 195 k...vqsalkrleeleecieelEeglekvfRrL 224
                 +    ++a++ ++e e+ ++ lE +l +v R L
  CCG92803.1 475 EwpgSEAAHRAIQEAEADLRALEGELARVERDL 507
                 234667888888888888888998888888877 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 5.8e-05
      DUF241  54 allqlke..hvqelqsalRRrkgge.iesevaaylrsrKkmkKeiaklls 100
                  +l+lke  h ++++s lR  +++   e++v+ y r+++k++K+++kl+s
  CCG92803.1 942 RILRLKEawHWAAARSWLRQLSNSSaYETRVQDYHRFKRKIEKATEKLAS 991
                 56777774467899******9988679********************976 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00015      0.12      18      49 ..     395     426 ..     385     434 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
  TrwB_AAD_bind  18 ilivGttGsGKtqalekllrairargdraivl 49 
                    +l+ G  G+GK+ ++ +l+ ++ argdr++v 
     CCG92803.1 395 VLVKGPPGTGKSHTIANLICHLLARGDRVLVT 426
                    6889*************************996 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00024      0.19      38      66 ..     392     419 ..     363     425 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
                   S-.SEEEE--TTSSHHHHHHHHHHHHHTT CS
  FtsK_SpoIIIE  38 mashllvaGatgsGKStalntLilSlatt 66 
                     s +lv G +g+GKS ++ +Li+ l+++
    CCG92803.1 392 G-SCVLVKGPPGTGKSHTIANLICHLLAR 419
                   3.379********************9985 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00045      0.35       7     126 ..     388     538 ..     383     540 .. 0.57
   2 ?   -2.6   0.0       9.2   7.2e+03      31      93 ..     926     990 ..     923    1008 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00045
                 EEETTSEEEEEESTTSSHH.HHHHHHTTSS--SEEEEEETTCEGGG..........B-HHHCCHCEEEE-SS--S-TTSBHHHH............... CS
                 xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF
    ABC_tran   7 klkegekvaivGenGaGKS.tLlkllagllkpteGeilldgkdlke..........qeleslrkeigvlpqepqlfpeltvren............... 79 
                  l+ g++v + G+ G+GKS t+++l+++ll    +++l+  +  k           +             q+ ++    + re                
  CCG92803.1 388 RLQTGSCVLVKGPPGTGKShTIANLICHLL-ARGDRVLVTAHAAKAlavlrgllpsD------------IQDLCVTALGSSREDqrlledsvhgilrrm 473
                 6899***************55566666665.57999977777777744444444431............333222222222222333333444445555 PP

                 .................HHHTC...HHHHHHHSTTGGTTCBGESTTSGGS-HHHHH.HHHHHHHHHHT CS
                 .................xxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
    ABC_tran  80 .................esdee...iekalsklglkelkdtvvksspssLSgGqkq.rvalarallkk 126
                                  +   +   +e  l++++ +  + + +++  ++LSgG      ++ar l ++
  CCG92803.1 474 newpgseaahraiqeaeA---DlraLEGELARVERDLQEFREAETYSHELSGGYSGtAAQIARKLSEQ 538
                 555555545446654432...23335666666666656666666677999999765255677776665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.2
                 HTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH.HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xxxxxxxxxxxxxx RF
    ABC_tran  31 lagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren.esdeeiekalsklg 93 
                 la ll+ teG+  + ++ l+ +e  ++ +  ++l q  ++  +e++v++    +++ieka +kl 
  CCG92803.1 926 LADLLRSTEGNTGWSERILRLKEAWHWAAARSWLRQLsNSSAYETRVQDYhRFKRKIEKATEKLA 990
                 66777788888878777777788888889999999984455555557776777777887777765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00023      0.18      44      81 ..     389     426 ..     382     437 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00023
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgveavraglsvlfv 81 
                 +++  ++++ Gp+G+GKsh  + l  +  ++g +vl +
  CCG92803.1 389 LQTGSCVLVKGPPGTGKSHTIANLICHLLARGDRVLVT 426
                 567789*************9999999999999888755 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0012       0.9       2      30 ..     395     425 ..     394     435 .. 0.75
   2 ?   -0.4   0.0       1.4   1.1e+03      78      98 ..     834     852 ..     827     868 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
                 EEEE--SSSSHH.HHHHHGGGGB..S--EEEE CS
       AAA_5   2 vlLvGppGtgKs.elaerlaaal..nreveyv 30 
                 vl++GppGtgKs ++a  ++++l  +++v+ v
  CCG92803.1 395 VLVKGPPGTGKShTIANLICHLLarGDRVL-V 425
                 799********9567888999998544443.3 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.4
                 -HHHHHHHHHHHHSSEEE..- CS
       AAA_5  78 esevlnsLlslleerrlllee 98 
                 +se+l++ + ll+ rr++  +
  CCG92803.1 834 RSEWLKIINALLDLRRFH--D 852
                 599**************9..4 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.4   4.2e+03     205     205 ..     966     966 ..     839    1030 .. 0.59
   2 ?   -2.5   0.0       3.2   2.5e+03      51     104 ..    1207    1261 ..    1148    1264 .. 0.64
   3 ?    9.8   0.0   0.00058      0.45     312     347 ..    1286    1320 ..    1274    1322 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.4
                 x RF
      UvrD_C 205 a 205
                 +
  CCG92803.1 966 S 966
                 1 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.2
                  xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   51 eeeEaekiaatikall.ekneklediavLvRsnkdadkiskaLkkegipfnvvde 104 
                  ++ Eae  ++t+  l+ +kn + ++i v+  + +   ++ ++L +++++ +v++e
  CCG92803.1 1207 NRAEAEALVETVVGLVnDKNYEGKTIGVIALQGHAQSQLIDSLLAQRLEPRVIEE 1261
                  5678888999999998788888999999999977777777777777777666665 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00058
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  312 tfPsyrskkekrleEEkRlfYVaiTRAkkrLfisys 347 
                  + P+  s+ + rl+E +R f Va++RA++++++ ys
  CCG92803.1 1286 ISPNVHSRALTRLSEQRR-FNVAMSRARDQVWLFYS 1320
                  679999999999998776.9***********99886 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0008      0.63       9      55 ..     402     627 ..     395     831 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0008
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep..................................................... 54 
                 G+GK+ + anL++ l  rg rVl+        +la+l gl +   +                                                     
  CCG92803.1 402 GTGKSHTIANLICHLLARGDRVLVTAHAAK--ALAVLRGLLPSDIQdlcvtalgssredqrlledsvhgilrrmnewpgseaahraiqeaeadlraleg 498
                 9**********9999999*****9764444..5555666666666667777777777777777777777777777777777777777777777777777 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        CbiA  55 ................................................................................................... 54 
                                                                                                                    
  CCG92803.1 499 elarverdlqefreaetyshelsggysgtaaqiarklseqeqefgwvsevsadapfpldpsetdflaevhvgltagtraelfleigdaellspnefedl 597
                 777777777777777777666666666666666666666666666666666666666666666666666666666666666666666666666666666 PP

                 .............................C CS
                 .............................x RF
        CbiA  55 .............................d 55 
                                              +
  CCG92803.1 598 iermkeaemsarrasglvdaakpelleatG 627
                 666666666666666666666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      717  (0.0399911); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 1.15u 0.30s 00:00:01.45 Elapsed: 00:00:00.53
# Mc/sec: 9664.28
//
Query:       CCG92804.1  [L=67]
Description: hypothetical protein MFUM_800019 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      152  (0.00847788); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 487.62
//
Query:       CCG92805.1  [L=59]
Description: hypothetical protein MFUM_800020 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.019   15.2   0.0      0.019   15.2   0.0    1.0  1  OrfB_IS605  Probable transposase


Domain annotation for each model (and alignments):
>> OrfB_IS605  Probable transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   1.1e-06     0.019      10      45 ..      18      50 ..       6      59 .] 0.75

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-06
  OrfB_IS605 10 lpkpkgnkaagiDlGinnLatvvtedgtwflykgrr 45
                l++++++ a+g+DlG++ +a+++ ++   ++++ ++
  CCG92805.1 18 LRPAENQGAIGVDLGMSAMASLSRGK---KIIDLKP 50
                889999******************99...6666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       184  (0.0102627); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 415.17
//
Query:       CCG92806.1  [L=482]
Description: transcription termination factor [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-27   95.2   0.0    2.8e-27   94.4   0.0    1.5  1  Rho_RNA_bind    Rho termination factor, RNA-binding domain
    4.2e-21   75.6   0.0    7.7e-21   74.7   0.0    1.5  1  ATP-synt_ab     ATP synthase alpha/beta family, nucleotide-bi
    1.6e-09   37.6   0.3    5.7e-09   35.8   0.3    2.1  1  Rho_N           Rho termination factor, N-terminal domain
     0.0012   19.3   0.3     0.0043   17.5   0.0    2.2  3  AAA             ATPase family associated with various cellula
     0.0024   17.8   0.0     0.0048   16.8   0.0    1.5  1  NACHT           NACHT domain
  ------ inclusion threshold ------
      0.011   15.3   0.1      0.068   12.7   0.1    2.0  1  AAA_25          AAA domain
      0.013   15.8   0.0      0.031   14.5   0.0    1.7  1  AAA_22          AAA domain
      0.017   14.5   0.1        0.3   10.4   0.0    2.3  2  Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
       0.11   12.9   0.0       0.33   11.3   0.0    1.7  1  AAA_16          AAA ATPase domain
       0.23   11.1   5.4       0.41   10.3   5.4    1.3  1  DUF5523         Family of unknown function (DUF5523)


Domain annotation for each model (and alignments):
>> Rho_RNA_bind  Rho termination factor, RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.0   1.6e-30   2.8e-27       3      73 .]     118     190 ..     116     190 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 1.6e-30
                   EEEEE-TTS-EEEE-G..TT---TT-EEE-CCCCCCTT--TT-EEEEEEE---SSS-SEEECEECEETTEEXX CS
  Rho_RNA_bind   3 GiLeilpdgygFlRts..nylpgpedvYVsasqirkfgLrtGDaveGkvrppkerekynaLlrvesvngeepe 73 
                   G+Leilp+gygFlR++  ny p +edvYVs+++irk+gL++G+ v+G +rppke+e+y++Ll+ve++++eepe
    CCG92806.1 118 GVLEILPEGYGFLRSEayNYFPCQEDVYVSPALIRKYGLKKGNLVSGPIRPPKEKERYFSLLQVEKIENEEPE 190
                   9*********************************************************************997 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   4.3e-24   7.7e-21       2     211 ..     221     425 ..     220     427 .. 0.91

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 4.3e-24
                  SHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS..S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   2 irvlDalfpivqGqrtlipgafgvGktvisqslskqsnsd..d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitl 96 
                  +rv+D+++pi+ Gqr li++   +Gktv++q++++  +++  +   i+ ++ er +ev+++ ++++ +       ++ +t +e++   ++++ + i  
   CCG92806.1 221 MRVMDLITPIGFGQRGLIVAPPRTGKTVLIQKIANAITENhpEaHLIVLLVDERPEEVTDMERSVKGE-------VISSTFDETPDRHVQVAEMVIER 311
                  69*********************************9877777469999***********987777654.......67788888888888999999999 PP

                  HHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGC.STTSHHHHHHHHHSSEEEEB CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  97 AEyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspagg.DfsdpvttatlgitdgfivL 193
                  A  +++++ +v++++dsl+r a+A++ +    g++  + g  a+  +k  ++   a ++ ++ Gsvti+a+  ++ g  ++d + ++  g  +  + L
   CCG92806.1 312 AKRMAENKIDVVILLDSLTRLARAYNTLQPHSGKIL-TGGVDANALQKPRRFFATARNL-EEGGSVTIIATALIDTGsKMDDVIFEEFKGTGNMELHL 407
                  9999999***************************97.589*******************.678*******98887662689999************** PP

                  -HHHHHTTBSSSBCTTTE CS
                  xxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 194 dkklaqrkhfPainvlvS 211
                  d++l +++++Pain+ +S
   CCG92806.1 408 DRALVDKRIYPAINIPKS 425
                  **************9887 PP

>> Rho_N  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.3   3.2e-12   5.7e-09       2      43 .]      71     112 ..      70     112 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.2e-12
                 HHHS-HHHHHHHHHHTT-TTGGGS-HHHHHHHHHHGGGSSSS CS
       Rho_N   2 LkektlseLraiAkelgienysrlRKqdLIfaIlkaqaekgg 43 
                 L++++ seL+  A e+ ien++ +RK ++If+Il + a+++g
  CCG92806.1  71 LQQLSFSELQIKAAEYQIENPGLMRKHEVIFEILRRNAQRNG 112
                 89999*********************************9986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         6   1.1e+04      62      86 ..     196     224 ..     181     227 .. 0.71
   2 !   17.5   0.0   2.4e-06    0.0043       2      74 ..     237     336 ..     236     382 .. 0.69
   3 ?   -3.5   0.0       7.1   1.3e+04      78     103 ..     450     472 ..     437     479 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6
                 EEEETGGGHHHHH....TTCCCHHHHHHH CS
         AAA  62 lfiDEidalaksr....sgseseeeervv 86 
                 +++D++  ++++r    +g++ + ++rv+
  CCG92806.1 196 IIFDNLTPIFPNRriflEGKSGDLSMRVM 224
                 78899999999997777666666666665 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 2.4e-06
                 EEESSTTSSHHHHHHHHHHHHTHE....................EEEEETTTCSSSSTTHHHHH....HHHHHHHHHHTS..TS.EEEEEETGGGHHHH CS
         AAA   2 llyGppGtGKTllakavakelgve....................fleisgsellskyvgesekk....irelfkeakeka..kp.silfiDEidalaks 73 
                 l++ pp tGKT l++ +a+ +  +                    + +    e++s+++ e++++     ++++++ak++a  k  +++++D + +la++
  CCG92806.1 237 LIVAPPRTGKTVLIQKIANAITENhpeahlivllvderpeevtdMERSVKGEVISSTFDETPDRhvqvAEMVIERAKRMAenKIdVVILLDSLTRLARA 335
                 6889****************84332333344444444444443332222233335566666655111134555666666687667********999987 PP

                 H CS
         AAA  74 r 74 
                  
  CCG92806.1 336 Y 336
                 6 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 7.1
                 CCHHHHHHHHHHHHHHHHTTTSSSTE CS
         AAA  78 eseeeervvnqLlteldgvkkkeskv 103
                 +s    ++++ Ll+ l++ k++   v
  CCG92806.1 450 SSVPPIEAMELLLERLKKTKNN---V 472
                 4555566777777777777773...3 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.7e-06    0.0048      12      99 ..     245     338 ..     241     368 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.7e-06
                 CHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-H.CHHHCCCCTS--SSS-CCHHHHCCSCCCEE.......EEEE-STT-SS-TCH CS
       NACHT  12 GKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsl.adllfsqlpepaapvsevwavllelperlL.......lilDglDelvtdlgq 99 
                 GKT+L+qk+a a+ e+++++  +  v+++  r  +    +rs+  +++ s ++e  +++ +v ++++e+++r+        ++lD+l +l++  + 
  CCG92806.1 245 GKTVLIQKIANAITENHPEA--HLIVLLVDERPEEVTDMERSVkGEVISSTFDETPDRHVQVAEMVIERAKRMAenkidvvILLDSLTRLARAYNT 338
                 *****************999..567777655433333333555169999*******9999*999*******9999999999999*99999876655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.8e-05     0.068      33      86 ..     233     278 ..     222     348 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.8e-05
      AAA_25  33 gelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedel 86 
                 g  +l++++p tGKt+l   +a a+++ +p ++        Vl+v+ E +e e+
  CCG92806.1 233 GQRGLIVAPPRTGKTVLIQKIANAITENHPEAH------LIVLLVD-ERPE-EV 278
                 6789***********************998644......4555555.6666.33 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.7e-05     0.031       8     112 ..     236     339 ..     233     349 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.7e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka....erlsseell.ealeqalraravielliiDEaq 101
                 +++++++ tGKT+l++++++  +  +++ e++  v++v+   ++  +d+ r +  ++ +++ +    +  +  e++ e+  + ++++ + +++++D   
  CCG92806.1 236 GLIVAPPRTGKTVLIQKIANAIT--ENHPEAHLIVLLVDERPEE-VTDMERSVKGEVISSTFDetpdRHVQVAEMViERAKRMAENKID-VVILLDSLT 330
                 789*****************985..5566677777788887777.45554444444444444432324555555555666666666666.888888877 PP

      AAA_22 102 hlrseealeeL 112
                 +l  ++a+++L
  CCG92806.1 331 RL--ARAYNTL 339
                 77..5555555 PP

>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00017       0.3      87     124 ..      37      74 ..      24      81 .. 0.91
   2 ?    1.4   0.0     0.096   1.7e+02      44     102 ..     304     367 ..     294     382 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00017
                     E-ST-TTHHHHHHHHHHTTSEEEEEE-TT--GGGGTTT CS
  Ribul_P_3_epim  87 HaEalehlkrtiqeikeaGakaglvlnpatplealeyl 124
                     H+E  + +++ti++ k++G++  ++l p+  l+ l++l
      CCG92806.1  37 HMEIKKSIQETITQTKNNGMEESVSLGPTLDLSKLQQL 74 
                     9******************************9998876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.096
                     B-HHHHHHHGGGE-S-EEEEEESSSHHHCHHHHHHCT-S...EEE..EE-ST-TTHHHHHHHHH CS
  Ribul_P_3_epim  44 igplvvealrkltelpldvHLmveevdrivpefaeagas...iis..vHaEalehlkrtiqeik 102
                     +  +v+e  +++ e ++dv ++++++ r++ ++  ++++   i++  v a al++++r+ ++ +
      CCG92806.1 304 VAEMVIERAKRMAENKIDVVILLDSLTRLARAYNTLQPHsgkILTggVDANALQKPRRFFATAR 367
                     5678999999****************99999999888763324442244446666666665555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00018      0.33      28      52 ..     237     265 ..     227     339 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
      AAA_16  28 llsGesGvGKsslvrellralekd....g 52 
                 l++ ++ +GK+ l++++++a++++    +
  CCG92806.1 237 LIVAPPRTGKTVLIQKIANAITENhpeaH 265
                 8999******************9966442 PP

>> DUF5523  Family of unknown function (DUF5523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.4   0.00023      0.41      67     158 ..       9     101 ..       2     108 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00023
     DUF5523  67 fnfdpepeeseekkkkke.keekeeeeeegeeeeeeeeeeeeeeeekdeeellvkkeeeeflldqtaedllevkkAeyesykerlkkekellF 158
                  n d  ++ + e+++ k+ +e +e++ee+ e +++ +e+ ++++++  ee+   +   ++  l+q +   l++k+Aey+  +  l +++e++F
  CCG92806.1   9 SNNDMPSSMKAENEEGKKiQEYSEQKEEHMEIKKSIQETITQTKNNGMEESVSLGPTLDLSKLQQLSFSELQIKAAEYQIENPGLMRKHEVIF 101
                 2333222222233333330333333344444445666666788889999999999999999999999999********************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1406  (0.0784204); expected 358.6 (0.02)
Passed bias filter:                      812  (0.0452898); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 3067.98
//
Query:       CCG92807.1  [L=203]
Description: Dephospho-CoA kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-47  161.6   0.0    1.9e-47  161.3   0.0    1.0  1  CoaE      Dephospho-CoA kinase
    7.4e-06   26.5   0.2    2.1e-05   25.1   0.2    1.8  1  AAA_18    AAA domain
    0.00071   19.9   0.0     0.0013   19.0   0.0    1.5  1  AAA_28    AAA domain
     0.0022   18.1   0.0      0.004   17.3   0.0    1.4  1  AAA_33    AAA domain
  ------ inclusion threshold ------
      0.042   14.3   0.1       0.77   10.2   0.1    2.2  1  AAA_17    AAA domain
       0.11   12.4   0.0       0.18   11.7   0.0    1.4  1  Leo1      Leo1-like protein
       0.11   13.0   0.1        2.9    8.4   0.0    2.4  2  DUF4996   Domain of unknown function
       0.17   12.4   0.2        0.3   11.6   0.2    1.4  1  ABC_tran  ABC transporter


Domain annotation for each model (and alignments):
>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.3   0.0   8.4e-51   1.9e-47       3     177 ..       4     181 ..       2     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 161.3 bits;  conditional E-value: 8.4e-51
                 EEEEESTTSSHHHHHHHHHHTT-EEEEHHHHHHHTTCCTHHHHHHHHHHHGGGCB.TTSSE-HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH- CS
        CoaE   3 vgltGgiasGKstvanlfadlgvpivDaDlvArqvvepgsealkkiveeFgeeildedGeLdReaLrkkvFadpeekkaLnallhPlirreikkelakl 101
                  gltGgi++GK+t+++++ + g++i+D+D +A+++ +pg+e +kk+v+eFg+eil++d +++R+ L+++vF++p+  ++Ln l+hP ir++ k ++ ++
  CCG92807.1   4 FGLTGGIGCGKTTLSSWLMKEGFEIIDTDRIAQELLQPGRENWKKVVDEFGKEILNNDNTINRRLLGQLVFQNPKLLETLNRLTHPSIRQQWKIKVIEA 102
                 59*****************************************************************************************99887777 PP

                 -S....SEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHCCTSTHHHHHHHHHHS--HHHHHHH-SEEEE-.SSH CS
        CoaE 102 es....kyvlldvPLLvEkqlekliervlvvdvelelqveRlvardgvseeevkaiiaaQlseeerlaladvvldNdssl 177
                 ++    k +++++PLL+E++lek +++vl v ++++ q +Rl++r  + + e++ +i++Q + e++++ +d+v  Nd+s+
  CCG92807.1 103 KKsdprKRIIVVIPLLFEEKLEKEFDKVLCVGCSPSVQFKRLLDRG-LISREIRMRIESQWPLEKKMENSDFVFWNDGSI 181
                 76689899************************************95.55668*************************987 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.2   9.4e-09   2.1e-05       3     121 ..       6     155 ..       5     177 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 9.4e-09
      AAA_18   3 ltGtpGvGKttlakeLskrlgf...................gvnlrdvakenglllevdpe.aldeskrldedkldklldaleenss............ 69 
                 ltG +G+GKttl+  L k++ f                   + ++ d + ++ l  +++ +  l  +++++ +kl + l+      +            
  CCG92807.1   6 LTGGIGCGKTTLSSWLMKEG-FeiidtdriaqellqpgrenWKKVVDEFGKEILNNDNTINrRLLGQLVFQNPKLLETLN------Rlthpsirqqwki 97 
                 89****************95.55588877777777777555555555555555555555553333333333333333333......2444666888888 PP

      AAA_18  70 ......aleegknl.vidghlaeleseaakdikkvvLtaspeelleRlekRgyeeakik 121
                       +++  k + v+  +l e   e+ +d++  ++ +sp++ ++Rl +Rg  +++i+
  CCG92807.1  98 kvieakKSDPRKRIiVVIPLLFEEKLEKEFDKV-LCVGCSPSVQFKRLLDRGLISREIR 155
                 888887555555542555555555566666666.******************8888886 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.7e-07    0.0013       4      50 ..       6      55 ..       4      91 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.7e-07
      AAA_28  4 itGgestGKTtlleaLaargypvv..pEaareileeklakgedalpwv.e 50
                +tGg ++GKTtl++ L ++g++++   ++a e+l+ + +++++  ++  +
  CCG92807.1  6 LTGGIGCGKTTLSSWLMKEGFEIIdtDRIAQELLQPGRENWKKVVDEFgK 55
                89*********************998999999999888888876665433 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.8e-06     0.004       6      79 ..       8      86 ..       5     132 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.8e-06
      AAA_33  6 GlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildat........n 79
                G  G+GK+tl+  l+ k+g++++++d + + l   +  ++++ + v +  ++iln+  +++++  +++++ ++        +
  CCG92807.1  8 GGIGCGKTTLSSWLM-KEGFEIIDTDRIAQELLQPG--RENWKKVVDEFGKEILNNDNTINRRLLGQLVFQNPklletlnrL 86
                678*********999.88*********999888433..33444444444566666666666666666666666444444332 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00034      0.77       1      66 [.       7      73 ..       7     157 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00034
                EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTS...HSSHHHHCTSHHHHHHHHHHHHHHHHH CS
      AAA_17  1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrggl...akardemrklpleekkelqkeaaekia 66
                +Gg G+GK+t+++ l++  gf+++   d + +e  + g    +k  de+ k+ l+ ++ + +++  ++ 
  CCG92807.1  7 TGGIGCGKTTLSSWLMK-EGFEIID-TDRIAQELLQPGRenwKKVVDEFGKEILNNDNTINRRLLGQLV 73
                6999********66655.5999999.5888877777765112444466667777777766666665554 PP

>> Leo1  Leo1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.9e-05      0.18      47      77 ..     153     183 ..     119     187 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.9e-05
        Leo1  47 tiRwRykedkgteikeSNArivrWsDGSlsL 77 
                  iR R + +   e+k  N+ +v W+DGS++L
  CCG92807.1 153 EIRMRIESQWPLEKKMENSDFVFWNDGSIHL 183
                 68999999536778889************98 PP

>> DUF4996  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0013       2.9      81      97 ..      20      36 ..      15      41 .. 0.88
   2 ?    2.1   0.0      0.12   2.6e+02      76      94 ..      43      62 ..      37      66 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0013
                HHHHT-EEEEEES-HHH CS
     DUF4996 81 wLidkgasiiqTDrpee 97
                wL+++g++ii TDr ++
  CCG92807.1 20 WLMKEGFEIIDTDRIAQ 36
                9*************865 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.12
                HHHHHHHHHT.-EEEEEES- CS
     DUF4996 76 devwgwLidk.gasiiqTDr 94
                 e+w +++d+ g +i+  D+
  CCG92807.1 43 RENWKKVVDEfGKEILNNDN 62
                689*************9997 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   0.00013       0.3      14      76 ..       4      64 ..       2     131 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
                EEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBH CS
                xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltv 76
                 +++G  G+GK+tL + l+++     + ++i    ++l +  +e ++k +  + +e  l+++ t+
  CCG92807.1  4 FGLTGGIGCGKTTLSSWLMKEGFEiiDTDRI--A-QELLQPGRENWKKVVDEFGKE-ILNNDNTI 64
                5899**************9876552244444..3.334444555555555444444.33333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1464.79
//
Query:       CCG92808.1  [L=345]
Description: Squalene/phytoene synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-48  164.4   0.0    4.5e-48  164.0   0.0    1.2  1  SQS_PSY        Squalene/phytoene synthase
  ------ inclusion threshold ------
       0.12   12.5   0.1       0.18   11.9   0.1    1.2  1  vWA-TerF-like  vWA found in TerF C terminus


Domain annotation for each model (and alignments):
>> SQS_PSY  Squalene/phytoene synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.0   0.0   5.1e-52   4.5e-48       7     259 ..      69     322 ..      58     326 .. 0.87

  Alignments for each domain:
  == domain 1  score: 164.0 bits;  conditional E-value: 5.1e-52
                 HHHHHHTTS-HHHHHHHHHHHHHHHHHT-.-----........................------------..---------THHHHHHHHHHHT--HH CS
     SQS_PSY   7 sfylaslllppelRdalgalYafcreaddlvDdvs.......eplqara.........rldwwrdavdavyaedklkpprepvlralaqlirtyklpke 89 
                 +f++  ll+ + l  +++a+Yaf r add +D+         e                ld+wr+ + +      +  +++pv+ al+++i++++lp +
  CCG92808.1  69 NFPVG-LLVAKNLAPHVHAIYAFSRIADDYADEGYslnekerE-----DeqkrkkrldSLDTWRAYLLDP-----KLCAKNPVFLALHDTIEKFQLPLN 156
                 44444.677899*********************9966544441.....1344456667777777777644.....46778******************* PP

                 HHHHHHHHTS--SS-..--SHHHHHHHHHHHHHHHHHHHHHHH-S.S-HHHHHHHHHHHHHHHHHHHHHT---SHHHHTT..S-HHHHHHHT--HHHHH CS
     SQS_PSY  90 llleliegmeadleftryetlddLeeYcyrvagvVgelclrllgarrsdralaeaarrlGkalQltnilRdvpeDaergrvyLPadvlkefgvseedll 188
                 l+++l++++++d+ ++ry ++++  +Yc+++a+++g+l+l l+  +++ +  +  ++ +++alQl n+++d++ D++++r+yLP+d +++++vse++l+
  CCG92808.1 157 LFTDLLDAFKQDVLKDRYKNFEEVLDYCKKSANPIGRLVLYLHRQTTDLQ--LLSSDFICTALQLANFWQDISIDLKKNRIYLPKDEMEQYKVSEAELF 253
                 *******************************************8855554..7778889**************************************** PP

                 HT-.-SHHHHHHHHHHHHHHHHHHHHHHHTGGGS.-HHHHHHHHHHHHHHHHHHHHHHHTTT-TTT----- CS
     SQS_PSY 189 rkgvrsaelrallrrlaerArelldearellkqlpdrrarpalllavalyrailerieaadydvlsrrvkl 259
                 +++  s+++r+ll ++++r++el+d++  l++ l + ++++ ++l++  +  il++i++ +y++l  r+kl
  CCG92808.1 254 ARH-FSSNFRDLLSFQVKRTEELFDKGKVLIDTL-EWPLKLEIALTWYGGKTILDKIKKINYNTLAFRPKL 322
                 987.9999**************************.999************************976566665 PP

>> vWA-TerF-like  vWA found in TerF C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     2e-05      0.18      85     167 ..     172     254 ..     140     267 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2e-05
  vWA-TerF-like  85 eeapvleevlekvrkepaelptlvlFitDGgvkkkkeiekalreaskepiFwqFvglgkseygvLeklDdlegRvvDNagFfa 167
                    +  +  eevl++ +k+++ +  lvl+++   ++ +   ++ +++a +++ Fwq + ++ ++ ++    D++e+ +v  a+ fa
     CCG92808.1 172 DRYKNFEEVLDYCKKSANPIGRLVLYLHRQTTDLQLLSSDFICTALQLANFWQDISIDLKKNRIYLPKDEMEQYKVSEAELFA 254
                    55567899******99999999***************************************9999999********9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2344.96
//
Query:       CCG92809.1  [L=273]
Description: Histidinol phosphatase, PHP family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00055   20.3   0.0    0.00078   19.8   0.0    1.3  1  PHP       PHP domain
     0.0038   16.9   0.0      0.008   15.9   0.0    1.5  1  PHP_C     PHP-associated


Domain annotation for each model (and alignments):
>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   8.7e-08   0.00078      15     167 .]      39     202 ..      21     202 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 8.7e-08
                 H..HHHHHHHHHCT-SEEEEEEEEBTTHHHHH..HHHHHHHTTTTSEEEEEEE..................E....EHHHH.................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
         PHP  15 lsieelvkkakelglkaiaiTDhgnlfgyvef..ykaakkkykagikpiiGleayvaddsekerpshltllaknqeGyknl.................. 93 
                 l  +  ++ + ++g   +++TDh+ + + ++f  + + k+k    +++ +G+e    +d++    +  ++++k  e  ++l                  
  CCG92809.1  39 L--DPWAESCFQKGVVDFCFTDHDRYREGIDFqvFDQWKQKF-PTLNVRLGIE----RDNDPVSGHSGLIWVK--ENWEKLdfvlgsvhfigdwpfdrn 128
                 3..6678888999**************777762245565555.79********....7777777888888884..445555557888888899999999 PP

                 ..........HHHHHHHHH..........HHHHHHS..................TTGG.........HHHHHHHHHHHHHHHC.T-EEEEEGC CS
                 ..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxx RF
         PHP  94 ..........lkllskaylegfyrkpridkellekhsegLivlsgclkGevfealdli.........eveekaeealeelakifgdyiEints 167
                           +++++++y+          k+ll+   +g+i   + l        dli         ++ ++ e  le+++++ + ++Eint+
  CCG92809.1 129 gfedgfskrpIEDIYRDYV----------KNLLQLIDQGFIDSVAHL--------DLIkifnyrpkgKIVDYFEPVLEKIKEK-DLCLEINTA 202
                 9999999999*********..........999999866666665554........3334444445558888899********9.*******95 PP

>> PHP_C  PHP-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.9e-07     0.008      12      37 ..     222     247 ..     219     259 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.9e-07
       PHP_C  12 eklglpgtgGSDAHrleeVGrayTef 37 
                  ++++p   GSDAH+  eVG+++ e+
  CCG92809.1 222 VEMKIPISIGSDAHSWLEVGKGFSEL 247
                 57899****************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2007.13
//
Query:       CCG92810.1  [L=159]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-29  101.8   0.0    2.4e-29  101.3   0.0    1.2  1  DUF192    Uncharacterized ACR, COG1430
  ------ inclusion threshold ------
      0.069   13.4   0.0       0.11   12.7   0.0    1.2  1  DUF3124   Protein of unknown function (DUF3124)


Domain annotation for each model (and alignments):
>> DUF192  Uncharacterized ACR, COG1430
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.0   2.7e-33   2.4e-29       3      95 ..      43     144 ..      41     145 .. 0.92

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 2.7e-33
                 EEEE-SHHHHHHTTTT-----TTEEEEEEECCEEEEEE--TT--S-EEEEEE-TTSBEEEEEEEE-TT-..........ECEEEEEETTHHHHHT--TT CS
      DUF192   3 vevAdteeerarGLmgreslpedegmlfvfdkerehsfwMkntripLdiifldadgriveieealkpqs..........vryvLElpaGaakklgikpG 91 
                 vev  ++++ arGLm+reslpe++gmlfv++ e++  fwMkntripL+i+++d+ g+i ei +++ p++          v+++LE+++G+++++++ pG
  CCG92810.1  43 VEVVWKPKDLARGLMYRESLPENQGMLFVLPFEQKAVFWMKNTRIPLSIAYMDNRGKILEIYSMK-PFDltpipsqssfVKFALEVNEGWFERHKLLPG 140
                 89999999******************************************************987.9955556667788999***************** PP

                 -EEE CS
      DUF192  92 drle 95 
                 d+l+
  CCG92810.1 141 DQLT 144
                 **96 PP

>> DUF3124  Protein of unknown function (DUF3124)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.2e-05      0.11      42      74 ..      90     122 ..      82     128 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
     DUF3124  42 sveYydteGklvreylekpielkplaslelvve 74 
                 s+ Y d++Gk+++ y  kp+ l+p+ s + +v+
  CCG92810.1  90 SIAYMDNRGKILEIYSMKPFDLTPIPSQSSFVK 122
                 799************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1047.87
//
Query:       CCG92811.1  [L=98]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0026   18.1   0.1      0.035   14.5   0.1    2.0  1  DrsE      DsrE/DsrF-like family
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.017   15.2   0.0    1.2  1  Cas6b_N   Cas6b N-terminal domain


Domain annotation for each model (and alignments):
>> DrsE  DsrE/DsrF-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   3.9e-06     0.035      67     113 ..      51      94 ..       4      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.9e-06
                 CGG.GT-EEEEEHHHHHHTT--GGGE-T--EEEE-HHHHHHHHHH-SE CS
        DrsE  67 lke.ygvklyvCgqaakargldededlgvgvevsglgelaelqnegdr 113
                 l++ ++ ++++C+ a + r+l++   +  +v  +glg la+l+  +d+
  CCG92811.1  51 LAAsKDFHIFACAYAIQSRNLSA---I-ESVCYGGLGLLADLIVHSDK 94 
                 44435589**************4...6.79************999887 PP

>> Cas6b_N  Cas6b N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   1.9e-06     0.017      54      99 ..      28      73 ..      25      76 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.9e-06
     Cas6b_N 54 Ykvidgkplilgieegaellkeifkkidelklgekklelkekelel 99
                Yk  +++  i++++eg+ ++k+++++ + +++    + +++++l++
  CCG92811.1 28 YKEKGHQIYIFCLDEGVREIKSLLAASKDFHIFACAYAIQSRNLSA 73
                8999999**********************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 676.83
//
Query:       CCG92812.1  [L=211]
Description: superoxide dismutase (Mn) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-39  134.0   1.2    2.1e-39  133.8   0.2    1.6  2  Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal do
    9.6e-31  106.1   0.3    1.8e-30  105.2   0.3    1.5  1  Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin


Domain annotation for each model (and alignments):
>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.66   5.9e+03      79      92 ..      28      41 ..      25      52 .. 0.63
   2 !  133.8   0.2   2.3e-43   2.1e-39       1     101 [.      97     197 ..      97     198 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.66
                HTT-HHHHHHHHGG CS
    Sod_Fe_C 79 yqnkradYieafwn 92
                y+ + ++Y++++ +
  CCG92812.1 28 YNGHHKAYVQNLNK 41
                66666777777655 PP

  == domain 2  score: 133.8 bits;  conditional E-value: 2.3e-43
                 --HHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETTTEEEEEEEETTTBGGGGTTCEEEEEE-SGGGTHHHHTT-HHHHHHHHGGGBBHHHH CS
    Sod_Fe_C   1 psgelaeaieedfgslekfkkefkaaalavfgsGwawLvldkkkkLeivttknqdnplvkeakplLalDvwehAYyldyqnkradYieafwnvvnWkev 99 
                 p+g+l e+i ++fgs+e+f+++f+aa+la+fgsGw+wLv++k++kLe+++t+nqdnpl+++++p +++DvwehAYyl+yq +r ++++afwnvvnWk+v
  CCG92812.1  97 PTGKLYEDILSQFGSFEAFQEKFEAAGLARFGSGWVWLVVNKEGKLEVLSTPNQDNPLSDGNQPFFGCDVWEHAYYLKYQFRRGEWLKAFWNVVNWKAV 195
                 899************************************************************************************************ PP

                 HH CS
    Sod_Fe_C 100 ee 101
                 ee
  CCG92812.1 196 EE 197
                 86 PP

>> Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.3     2e-34   1.8e-30       1      82 []       2      90 ..       2      90 .. 0.96

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 2e-34
                S------SS-TTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHHCH.HHHCHCCHHHHHH......HHHHHHHHHHHHHHHHHHHHHTB- CS
    Sod_Fe_N  1 kyeLpeLpYaydaLePhisketlelHhdkHhktYvnnlNkalekl.eeakkkleelvlk......klekalrnnagghvnHslfwknls 82
                +y+Lp+LpYa+daLePhi+  t+++H++ Hhk+Yv+nlNkal+++ ++++k+ eel ++      ++++a+rnn+gghvnHs+fw++++
  CCG92812.1  2 AYQLPPLPYALDALEPHINTMTMDCHYNGHHKAYVQNLNKALADYpDFQRKRPEELLMAldsipqNIRTAVRNNGGGHVNHSFFWRIMA 90
                59*******************************************99****99999998999999*********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1772.96
//
Query:       CCG92813.1  [L=820]
Description: DNA segregation ATPase FtsK/SpoIIIE [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-53  181.0   0.0      9e-52  175.8   0.0    2.2  1  FtsK_SpoIIIE    FtsK/SpoIIIE family
    1.2e-26   92.8   0.8    2.2e-26   91.9   0.0    1.9  2  FtsK_alpha      FtsK alpha domain
    2.4e-24   84.9   0.0    5.3e-24   83.8   0.0    1.6  1  FtsK_gamma      Ftsk gamma domain
    1.1e-21   77.3   8.4    1.7e-21   76.6   8.4    1.2  1  FtsK_4TM        4TM region of DNA translocase FtsK/SpoIIIE
    0.00039   19.6   0.0    0.00068   18.8   0.0    1.3  1  T2SSE           Type II/IV secretion system protein
    0.00071   19.7   1.6     0.0027   17.8   0.0    2.5  3  DUF87           Helicase HerA, central domain
     0.0011   19.0   0.2      0.003   17.6   0.0    1.8  2  ResIII          Type III restriction enzyme, res subunit
     0.0019   17.2   0.0      0.029   13.3   0.0    2.3  2  TrwB_AAD_bind   Type IV secretion-system coupling protein DNA
     0.0025   16.8   0.0     0.0042   16.0   0.0    1.4  1  AAA_10          AAA-like domain
     0.0045   17.3   0.1      0.016   15.4   0.1    2.0  1  AAA_22          AAA domain
  ------ inclusion threshold ------
       0.02   14.6   0.0      0.048   13.4   0.0    1.6  1  DEAD            DEAD/DEAH box helicase
      0.031   13.7   0.0       0.12   11.8   0.0    1.9  2  Pox_A32         Poxvirus A32 protein
      0.033   13.4   0.2      0.086   12.1   0.2    1.7  1  DUF2075         Uncharacterized conserved protein (DUF2075)
      0.046   14.1   0.1       0.78   10.1   0.1    2.3  1  AAA_19          AAA domain
      0.046   13.4   0.0       0.12   12.1   0.0    1.6  2  Acetyltransf_8  Acetyltransferase (GNAT) domain
      0.068   13.4   0.0       0.25   11.5   0.0    1.9  1  HemY_N          HemY protein N-terminus
       0.84   10.1  10.4        3.3    8.2   2.9    3.2  2  AAA_23          AAA domain


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.8   0.0   8.5e-55     9e-52       2     241 ..     451     648 ..     450     650 .. 0.97

  Alignments for each domain:
  == domain 1  score: 175.8 bits;  conditional E-value: 8.5e-55
                   HHHHHTSHHHHT---TTEEEEEEETTS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSSCGGGTT-TTBSS.S- CS
  FtsK_SpoIIIE   2 LlevleskkfrtessqlpvalgkeisgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgvelsalediphllsvav 98 
                   L+++les  ++++++++p+algk++ g++l++dl +m+ hll+aGatgsGKS++ln+++lSl+++  P +++ il+D+k vel+a+++i+hl+  +v
    CCG92813.1 451 LRDILESPDWNNSKAKIPLALGKNVYGEALIADLFEMP-HLLIAGATGSGKSVCLNSILLSLLYKFGPSDLRIILVDPKQVELQAYNGIAHLIV-PV 545
                   7899**********************************.******************************************************9.** PP

                   B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTT---B-TT-......................-----------B-----EEE CS
  FtsK_SpoIIIE  99 atdperalraleeLvkemeeryalfreagvrsiaaydgeiaedpldifgdvflvlDnyddlaaeneritsLsnqgpsygvhvlvtagrelekrpslv 195
                   + d +++l+ l++L++eme+ry l++eag+r+i ay+++ ++    i+                                    +++ + ek+p +v
    CCG92813.1 546 IIDSKKVLNGLKWLIQEMERRYGLLAEAGTRNIIAYNSKLERTTSTIK------------------------------------EEEEKKEKLPWIV 606
                   ******************************************888864....................................5788899****** PP

                   EEEC-HHHHHHHHHHH....HHHHHHHHHHHCGGGTEEEEEEES-- CS
  FtsK_SpoIIIE 196 vivderieLrlaapkdssvlvedaivRlarkgraaglHlllatqrl 241
                   v++de+++L+++ p++    ve ai+Rl +k+raag+Hl++atq +
    CCG92813.1 607 VVIDELADLMQTTPAE----VEVAIARLSAKARAAGIHLIVATQTP 648
                   ****************....***********************976 PP

>> FtsK_alpha  FtsK alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       9.6     1e+04      17      34 ..     205     222 ..     193     224 .. 0.75
   2 !   91.9   0.0   2.1e-29   2.2e-26       2     101 .]     343     443 ..     342     443 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 9.6
  FtsK_alpha  17 edeeelekkaklieetle 34 
                   +++l+k++k+ie++l+
  CCG92813.1 205 LAHKKLRKEEKEIEKVLK 222
                 567788999999999987 PP

  == domain 2  score: 91.9 bits;  conditional E-value: 2.1e-29
  FtsK_alpha   2 PsldlLeeeekek.kkedeeelekkaklieetleefgieakvveisvGPvvtqyevepapgvkvskiaaleddlalaLaaksirieapipGksvvGiev 99 
                 P+++lL++++     ++ e+el+++a+l+ etl++fgie++   i+ GP++t++e+ pa+gv+v +i++l++d+a++++a++++i apipGk+ vG+e+
  CCG92813.1 343 PPISLLRQNPYLGkVAVPESELRNQAQLLIETLASFGIEVNPGAITYGPTITRFELYPAAGVRVDRIKNLQRDIARSMRAERVNILAPIPGKDSVGVEL 441
                 9999999988754278899******************************************************************************** PP

  FtsK_alpha 100 Pn 101
                 Pn
  CCG92813.1 442 PN 443
                 *9 PP

>> FtsK_gamma  Ftsk gamma domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0     5e-27   5.3e-24       2      62 ..     751     811 ..     750     812 .. 0.96

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 5e-27
  FtsK_gamma   2 eeDelfeeavelvveegkaStSllQRrlriGYnRAarlidqLeeeGiVgpaegskpReVli 62 
                 ++ el+++++e++ +e++aStSllQRrlr+GYnRAa  +d Lee+GiVgp++g+kpRe+l+
  CCG92813.1 751 SDRELIQKCLEIIWQEKRASTSLLQRRLRLGYNRAAWVMDLLEEKGIVGPENGAKPREILV 811
                 56799*******************************************************8 PP

>> FtsK_4TM  4TM region of DNA translocase FtsK/SpoIIIE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   8.4   1.6e-24   1.7e-21       3     160 ..       8     168 ..       6     178 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 1.6e-24
    FtsK_4TM   3 llkEllgllllllalflllaLlsYspdDpswstsgsaaaavhNwgGrvGAwladlllslfGlsawllvvlllawglrllrrkslerrllrllgalllll 101
                 +l E++ ++++ +a++l+l+L+s++++D ++++   ++ a++N++G +GA+ a +l+++fG++a+ ++vll+ +g++l  ++++  ++ ++   +lll 
  CCG92813.1   8 ILFEIFSIVCFGAAILLILSLASFHATDIAFNQWPPKT-ATSNAVGPLGAYTAFFLFMFFGFGAYTVPVLLITAGIALGIHAKIC-WWKKIPLSFLLLS 104
                 5679******************************8875.******************************************9877.6777777788888 PP

    FtsK_4TM 102 asaalfalrlasled....elpggaGGvlGrllaaa.lstllgftGatllllvllliglslvlg 160
                 ++aal +l+    ++    +  +++GG++G++   + l+++lg  G+++ll++ll++ ++l+ +
  CCG92813.1 105 SIAALLELQPLLGKIteqnREIFTPGGLIGDIAKRLlLVRFLGEPGSLVLLIILLILFFVLLYE 168
                 888888887665533333466799*********9975799*************99999988765 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   6.5e-07   0.00068     121     175 ..     479     536 ..     405     548 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6.5e-07
       T2SSE 121 vlrkavrerglilvsGgTgsGKttllyallkeinks....derivtvEDpvEiqlegan 175
                 +l + + e   +l++G+TgsGK++ l+++l  +  +    d ri++v Dp  ++l++ n
  CCG92813.1 479 ALIADLFEMPHLLIAGATGSGKSVCLNSILLSLLYKfgpsDLRIILV-DPKQVELQAYN 536
                 444444555689**************988765544335547888888.78777777665 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       4.3   4.6e+03     151     182 ..     225     280 ..     177     320 .. 0.54
   2 !   17.8   0.0   2.6e-06    0.0027      24      60 ..     488     527 ..     481     536 .. 0.88
   3 ?   -0.7   0.1       1.2   1.2e+03     130     160 ..     737     769 ..     703     793 .. 0.52

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.3
       DUF87 151 k........................kekeelrklknqaiarlldkledllrkggsf 182
                                          ++k+  +++  q++ +l +k + + +k+++ 
  CCG92813.1 225 SppplcvdslfrrkndtsgisgiigNSKDLDNNPIPQQKPSLFKKMNLFGNKEKEG 280
                 25555544444555555555555544444444555555555555555555555555 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.6e-06
       DUF87  24 rHlAilgsTGsGKSntvavLleelle...kkgatililDp 60 
                  Hl+i g TGsGKS    ++l +ll      +++i+++Dp
  CCG92813.1 488 PHLLIAGATGSGKSVCLNSILLSLLYkfgPSDLRIILVDP 527
                 5***************99999888876876778******9 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.2
       DUF87 130 a......keekeklssdepveklleelkkekeelrkl 160
                 +      ke++ + s +e+++k+le ++    +++++
  CCG92813.1 737 NaidnetKELEISESDRELIQKCLEIIW----QEKRA 769
                 1221222344444444555555555555....33333 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.3         7   7.4e+03      86     109 ..     275     306 ..     255     332 .. 0.53
   2 !   17.6   0.0   2.9e-06     0.003      25     140 ..     488     611 ..     466     628 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 7
                 EEEESSS-B--...............-SEEEE CS
      ResIII  86 gkkvsgdkkka........kekdstnkkilvt 109
                 +k+++g++++          ++ds+n  ++++
  CCG92813.1 275 NKEKEGENQNTstsnsfesPKNDSKNDPLIFS 306
                 22233333333223333344666666666665 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.9e-06
                 SEEEEEESTTSTHHHHHHHHHHHH-.S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--...............-SEEEEEHHHH CS
      ResIII  25 krglikmaTGtGKTlvaaklierll.kkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka........kekdstnkkilvttiqsl 114
                  ++li+ aTG+GK++++ ++  +ll k g+ +  ++lv+ k++  q+++ +++++ +   + +k+++g k  +           ++  ++ +++  ++l
  CCG92813.1 488 PHLLIAGATGSGKSVCLNSILLSLLyKFGPSDLRIILVDPKQVELQAYNGIAHLIVPVIIDSKKVLNGLKWLIqemerrygL-LAEAGTRNIIAYNSKL 585
                 5899*************77666665055556688999**************9999998888888888887777566556532.3333444445555666 PP

                 HHTH........HHHTTT-SEEEEET CS
      ResIII 115 dadseeeeeeseellrdrfdviiiDE 140
                  +  ++ +ee+e++++    v++iDE
  CCG92813.1 586 ERTTSTIKEEEEKKEKLPWIVVVIDE 611
                 66664446666666777777999999 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.8e-05     0.029      13      51 ..     485     527 ..     479     542 .. 0.75
   2 ?    0.9   0.0      0.16   1.7e+02     233     281 ..     591     647 ..     572     660 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-05
  TrwB_AAD_bind  13 retqhilivGttGsGKtqalekllrairarg....draivlDl 51 
                     e  h+li+G+tGsGK+++l+++l ++  +      r+i +D+
     CCG92813.1 485 FEMPHLLIAGATGSGKSVCLNSILLSLLYKFgpsdLRIILVDP 527
                    5888****************99886655443233356666665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.16
  TrwB_AAD_bind 233 allslpesrerrlW..fflDElpaLgrle......elksllaegRkfGgavvlglqs 281
                    ++++ +e++e+  W  +++DEl++L +        ++++l a++R  G+ ++++ q+
     CCG92813.1 591 TIKEEEEKKEKLPWivVVIDELADLMQTTpaevevAIARLSAKARAAGIHLIVATQT 647
                    4444444444444522679***99976542322245778888999999999999997 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     4e-06    0.0042      22      82 ..     488     549 ..     479     668 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4e-06
      AAA_10  22 sasliiGdlGnGKSvlakllvlyisllg....gkaliiDpkkerekfketlpeiakkinvvtLds 82 
                 ++ li G +G GKSv+ + + l ++        +++++Dpk+ + ++++ +    + i  v +ds
  CCG92813.1 488 PHLLIAGATGSGKSVCLNSILLSLLYKFgpsdLRIILVDPKQVELQAYNGIA---HLIVPVIIDS 549
                 799***************998766543236669********98777666553...3455555553 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.6e-05     0.016       7     134 ..     489     650 ..     485     653 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.6e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee.....................erpevvfvtlpsst...sskdllrellralglelka.......erls 74 
                 +l++ G +G+GK+++l+ +l +l     + +                       +    v + s++   ++k l +e+ r +gl ++a       ++ +
  CCG92813.1 489 HLLIAGATGSGKSVCLNSILLSLLYKFGPSDlriilvdpkqvelqayngiahLIV---PVIIDSKKvlnGLKWLIQEMERRYGLLAEAgtrniiaYNSK 584
                 799*******************964333333666666665555554443211111...22222222233555555555555555555599999987777 PP

      AAA_22  75 seellealeqalrarav..ielliiDEaqhlr..s....eealeeLrsllnlsrkgvqliLvGtpelr 134
                 +e+  +++ +  +++ +    +++iDE   l+  +    e a+  L+  +  +  g++li++ ++  r
  CCG92813.1 585 LERTTSTIKEEEEKKEKlpWIVVVIDELADLMqtTpaevEVAIARLSAKA--RAAGIHLIVATQTPRR 650
                 788888888888888889999******99988653433333444443333..5888888887776555 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.5e-05     0.048      11     149 ..     484     630 ..     465     654 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.5e-05
                 HHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT..ST....SEEE.EEETTSSHHHHHHHHHTTCSEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xx....xxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  11 ilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky..id....lrvl.liiggvaardqlskldngvdivv 102
                 + +  ++l+a++TGsGK+ +    +l+ +y+  g +  ++++v P  +   q +n +  ++ +  id    l+ l ++i++ ++r  l + ++g++ ++
  CCG92813.1 484 LFEMPHLLIAGATGSGKSVCLNSILLSLLYK-FGPSDLRIILVDPK-QVELQAYNGIAHLIVPviIDskkvLNGLkWLIQEMERRYGLLA-EAGTRNII 579
                 44556789******************99999.99999999999995.4566777777777775333343332222122333333333322.35666666 PP

                 EEHHHHHHHH......HCTSSHCTTE..EEEEEETHHHHHHTTTHHHHHHHHHHS CS
                 xxxxxxxxxx......xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 103 gtpgrlddll......stgklnlsqv..rflVlDEadrlldqgfsdfinrilnql 149
                 +  ++l + +      + +  + +++   ++V+DE   l++     +++  +++l
  CCG92813.1 580 AYNSKLERTTstikeeE-E--KKEKLpwIVVVIDELADLMQT-TPAEVEVAIARL 630
                 66666666554555421.2..234442235778886666665.555555555555 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.12       9      49 ..     480     527 ..     473     568 .. 0.73
   2 ?   -1.5   0.0       1.3   1.4e+03      80     111 ..     581     616 ..     570     670 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
     Pox_A32   9 LlkkpFrl...alvGgsGsGktvyLlsLlrtlvkky....khifLltp 49 
                 L+++ F++    + G +GsGk v L s+l +l +k+      i L+ p
  CCG92813.1 480 LIADLFEMphlLIAGATGSGKSVCLNSILLSLLYKFgpsdLRIILVDP 527
                 66666665332689********************99443224555555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
     Pox_A32  80 tkekiekla...kkeknqk.eaerfLlilDDlGdkq 111
                 + +k+e+ +   k+e+++k +   +++++D+l d+ 
  CCG92813.1 581 YNSKLERTTstiKEEEEKKeKLPWIVVVIDELADLM 616
                 444444433000323333313446778889988853 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   8.2e-05     0.086       4     102 ..     490     618 ..     488     643 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.2e-05
     DUF2075   4 vlVtGvaGtGKtvvllnllael.......................edde..eertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsef 77 
                 +l+ G++G+GK+v+l+++l  l                          +   +  + +++ +++ ++ l+  +++ e  ++++  +e  +  i +++++
  CCG92813.1 490 LLIAGATGSGKSVCLNSILLSLlykfgpsdlriilvdpkqvelqaY--NgiAHLIVPVIIDSKKVLNGLKWLIQEME--RRYGLLAEAGTRNIIAYNSK 584
                 689*****************99988888777777766655544442..03333333444444444444444443333..33333333333333333322 PP

     DUF2075  78 ........kkaeekkeepkedvvivDE.Ahrllt 102
                         k++eekke+ +  vv++DE A ++ t
  CCG92813.1 585 lerttstiKEEEEKKEKLPWIVVVIDElADLMQT 618
                 3333333355558888888889999986666655 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00074      0.78       9     115 ..     486     616 ..     478     623 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00074
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae............................atTiHrlalld 79 
                 + ++ll+ +  G+GK+ +l+ i+  l+   g +  +i+lv + +   +  +     l ++                            a T      ++
  CCG92813.1 486 EMPHLLIAGATGSGKSVCLNSILLSLLYKFGPSDLRIILVDPKQVELQAYNGIA-HLIVPviidskkvlnglkwliqemerrygllaeAGTRNI---IA 580
                 556677777789999999999987777666665556666655543332222222.222333333445555556666556555555554666554...46 PP

      AAA_19  80 fddlltealelle.eaeeekklqeee.llivDEfqdvd 115
                 ++++l+ + + ++ e+e+++kl   + ++++DE  d+ 
  CCG92813.1 581 YNSKLERTTSTIKeEEEKKEKL--PWiVVVIDELADLM 616
                 6677767777777344445555..77799****99986 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       8.8   9.3e+03      83     122 ..     489     528 ..     489     531 .. 0.80
   2 ?   12.1   0.0   0.00011      0.12      32     118 ..     589     678 ..     576     686 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 8.8
                     EEEESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--B CS
  Acetyltransf_8  83 HlligeaeargkglttallralvhylfadprtrrvvvEPd 122
                     Hlli+ a+  gk +    +   + y f  ++ r ++v+P+
      CCG92813.1 489 HLLIAGATGSGKSVCLNSILLSLLYKFGPSDLRIILVDPK 528
                     8999999999988888777777777787778888888886 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00011
                     HHHHHHHC.STTEEEEEEEETTEEEEEEEEEEGGGCGGGGCS.---TT-EEEEEEES...SHHHCTTTCHHHHHHHHHHHHHCCTT--EEE CS
  Acetyltransf_8  32 rellakldadphsepliglldgepvgyfeiYwakedelaeyy.daepgdrGiHllig...eaeargkglttallralvhylfadprtrrvv 118
                       + ++ ++++++ p+i+ + +e + ++++  ++e e+a ++  a+    GiHl+++   + +++  g+++a +++ +++ +a++  +rv+
      CCG92813.1 589 TSTIKEEEEKKEKLPWIVVVIDELADLMQTT-PAEVEVAIARlSAKARAAGIHLIVAtqtPRREVITGVIKANIPSRIAFQVASSLDSRVI 678
                     44444555689999****************5.777777666669*************4444445668888888888888888877555555 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00024      0.25      15      91 ..     151     226 ..     149     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00024
      HemY_N  15 slvvavlllvllfvllylllrllrlllrlparvrrwrrrrrerkarealseGlialaeGdfarAekaaakaaklsea 91 
                 slv++++ll+l+fvlly     +r l+rl   +++  ++++e   +++ + G ++la+   ++ ek++ k +k+++ 
  CCG92813.1 151 SLVLLIILLILFFVLLYET-EPVRSLIRLAIYLKEKIEAHQEALLQQKGLSGQLELAHKKLRKEEKEIEKVLKKQSP 226
                 6777777777777777765.56789999999999999999****************************999988765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.9     0.036        38     154     198 ..     177     223 ..     108     226 .. 0.67
   2 ?    8.2   2.9    0.0031       3.3      20      50 ..     488     518 ..     483     780 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.036
      AAA_23 154 rleelekeleeledekkllekl......eqekekekeleeleeeleeilke 198
                 rl+ + ke+ e+ +e+ l++k       +      k+l + e+e+e++lk+
  CCG92813.1 177 RLAIYLKEKIEAHQEALLQQKGlsgqleL----AHKKLRKEEKEIEKVLKK 223
                 55566666666666664444446544442....444444444444444443 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0031
      AAA_23  20 gltlItGpNGaGKTTildAiklaLygetprl 50 
                 +  lI G +G+GK+  l+ i l L  ++++ 
  CCG92813.1 488 PHLLIAGATGSGKSVCLNSILLSLLYKFGPS 518
                 6679******************985544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1203  (0.067098); expected 358.6 (0.02)
Passed bias filter:                      814  (0.0454013); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 5492.80
//
Query:       CCG92814.1  [L=377]
Description: Predicted transcriptional regulator contains Xre-like HTH domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-21   74.2   0.2    8.5e-21   73.6   0.2    1.3  1  HTH_25    Helix-turn-helix domain
    2.5e-11   43.6   0.0    4.9e-11   42.7   0.0    1.5  1  DUF4115   Domain of unknown function (DUF4115)
    4.3e-07   29.9   0.0      8e-07   29.0   0.0    1.5  1  HTH_19    Helix-turn-helix domain
    0.00078   19.7   0.1     0.0013   19.1   0.1    1.4  1  HTH_31    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.2   1.9e-24   8.5e-21       1      61 [.      26      86 ..      26      87 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1.9e-24
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT--TTSS-HHHHHHHHHHHHHHTT--HHH CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEeddfdalpepvylrgylrnYArlLgldpee 61
                rLraaRea+glsl+ v+k tkI +++l alE+d++d++p+ + +rg++r YA+ Lg+d+++
  CCG92814.1 26 RLRAAREAQGLSLQTVSKITKILPEQLVALEQDQYDKIPASAQVRGFVRIYAKTLGMDERP 86
                7*********************************************************986 PP

>> DUF4115  Domain of unknown function (DUF4115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.1e-14   4.9e-11       1      71 [.     299     370 ..     299     373 .. 0.92

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.1e-14
     DUF4115   1 lvltatadsWveVrdadG...kvlfegtlkaGetkevsgkppltltiGnagavevsvnGkpvdllgyargnvar 71 
                 lv++a++dsW+ ++ ++G   +++f+g+l+ Ge+ke+   p++++++ n ++ve+ ++Gk+v +++ a+  +++
  CCG92814.1 299 LVVQARKDSWIFIQVIEGgkpRQVFSGVLHGGERKEF-IGPRFQIRASNISQVEFILDGKSVSIAS-AGDATQD 370
                 789**********************************.568***********************99.7776665 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.8e-10     8e-07       1      62 [.      24      90 ..      24      93 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.8e-10
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.....aelllkiaealgidleyllqg 62
                G+rL++aRe  gl+++ +++ ++i + ++ a+E +++d+++     ++ ++ +a++lg+d+  ll+ 
  CCG92814.1 24 GQRLRAAREAQGLSLQTVSKITKILPEQLVALEQDQYDKIPasaqvRGFVRIYAKTLGMDERPLLNE 90
                9****************************************888888888**************996 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   2.8e-07    0.0013       2      54 ..      23      76 ..      22      91 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.8e-07
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrg.rpspavlealaral 54
                +G++Lra+Re++GLs++ v + + + + +l  lEq + + +p  a+++ ++r++
  CCG92814.1 23 IGQRLRAAREAQGLSLQTVSKITKILPEQLVALEQDQYDkIPASAQVRGFVRIY 76
                69*********************9999999999998888566444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2380.55
//
Query:       CCG92815.1  [L=445]
Description: Ribosomal protein S12 methylthiotransferase rimO [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-25   88.9   0.0    3.5e-25   87.9   0.0    1.5  1  UPF0004      Uncharacterized protein family UPF0004
    2.1e-21   77.0   0.1    8.6e-21   75.0   0.0    1.9  2  Radical_SAM  Radical SAM superfamily
    2.8e-13   49.8   0.0    5.4e-13   48.9   0.0    1.5  1  TRAM_2       TRAM domain
  ------ inclusion threshold ------
       0.21   11.9   1.1        4.5    7.5   0.1    3.3  5  Fer4_12      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> UPF0004  Uncharacterized protein family UPF0004
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   7.7e-29   3.5e-25       2      98 .]      10     109 ..       9     109 .. 0.95

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 7.7e-29
                 EEEE--S-CCCCHHHHHHHHHTTTSSS----SSS--SEEEEEE--SSSSHHHHTHHHHHHHHTTS...T.--EEEEEEHHHHS-HHHHHHH-TTS-EEE CS
     UPF0004   2 vaietlGCqmNevdseelaslLkkegyelvedeeeAdvvlvnTCavrekaekkviqalrelkalk...kpekkvvvlGCmaqrekeellkeepevdlvl 97 
                 +a+++lGC++N vdse++++ L ++g +l+ ++++Ad++l+nTC+++  a+k++i+++ ++ + +     ++k+vv+GC+ qr+++el +  pevdl+l
  CCG92815.1  10 IAMISLGCSKNLVDSEVMLGKLLDAGASLTASPHRADILLINTCGFILPAKKESIETILAAIHRRetgATKQKIVVTGCLFQRYGKELSSLLPEVDLFL 108
                 67899*****************************************************9998888565588**************************99 PP

                 - CS
     UPF0004  98 g 98 
                 g
  CCG92815.1 109 G 109
                 8 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   1.9e-24   8.6e-21       3     167 .]     163     335 ..     161     335 .. 0.82
   2 ?   -0.9   0.0      0.42   1.9e+03      20      43 ..     349     372 ..     336     377 .. 0.73

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 1.9e-24
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS.........TTHHHHHHHHHHTC........CCTEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxx........xxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggeplly.........pdfvellerlakla........vpgiritve 83 
                  + +gCn+ C+fC++p+    +gr+rs+s++++l+e+ ++ +e+g+ke+il +++ ++y         + +v+l                + +ir+ ++
   CCG92815.1 163 IAEGCNHPCTFCIIPK---IRGRYRSRSIDSVLKEASAM-VERGTKEIILISQDTTFYgidqstqkvSLLVDL-------LsgleaipgDFWIRLLYT 249
                  789************9...6*******************.9****************9887776555223333.......133345545678888888 PP

                  ECSSCHGHHHHHHHHHTT..-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET...EEEEEEEBTTTSHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  84 tngtlpdeeklerllelg..vdrvslgleaaddekvlklmnrghtfeevlealeklreagikr...vvdrivglpGendeeleellell 167
                   ++++  e  +e++        ++ +++++++d  vl +m r+ +   + e+l  +r++ +k+    ++ ivg+pGe++e++++l +++
   CCG92815.1 250 HPAHWT-EALIEKFSSSKkiAKYIDIPIQHISDP-VLGRMQRKTSEAYLRELLFEIRKK-VKEaaiRTTLIVGFPGESEEDYQKLCDFI 335
                  888886.88888888888889************8.*****7777776666777777777.8888888******************9996 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.42
                  HHHHHHHHHHHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  20 vrregrgrslsveeileevkelka 43 
                  +  eg+ +++ +++++e+vk+ +a
   CCG92815.1 349 SPEEGTKAEKMMDQVAEKVKKRRA 372
                  56799999999********99874 PP

>> TRAM_2  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   1.2e-16   5.4e-13       1      62 [.     391     445 .]     391     445 .] 0.91

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.2e-16
                 BTSEEEEEEEEEETTEEEEEETTS-TTTS--EEEES---T....T-EEEEEEEEEETTEEEEE CS
      TRAM_2   1 iGktvevlvdgeeeglyvGRsyadAPEvDgevyvtgaeklsk.vGdfvkvkItdadeyDLiGe 62 
                 iGk+++vl+d+      ++Rs++dAPEvD  v+v  +      +G+f +vkI+d+++yDLi++
  CCG92815.1 391 IGKKLKVLIDRP----GLARSQWDAPEVDTLVHVPLS----LpPGQFAEVKIVDFKDYDLIAQ 445
                 9**********8....569***************943....247*****************95 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.28   1.3e+03      67     113 ..      59     106 ..      55     109 .. 0.71
   2 ?    7.5   0.1     0.001       4.5      12      40 ..     164     192 ..     156     278 .. 0.69
   3 ?   -1.8   0.0      0.76   3.4e+03      69     100 ..     297     329 ..     291     343 .. 0.66
   4 ?   -1.1   0.1      0.45     2e+03      15      56 ..     332     375 ..     328     379 .. 0.68
   5 ?   -1.3   0.0      0.53   2.4e+03      72     115 ..     360     399 ..     347     402 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.28
     Fer4_12  67 enaeallelvkevkeekp..ekdiwlytgytleelskkekeellkeidv 113
                 +++e +  ++  + ++    +k+ ++ tg  ++   k e ++ll e+d 
  CCG92815.1  59 AKKESIETILAAIHRRETgaTKQKIVVTGCLFQRYGK-ELSSLLPEVDL 106
                 5666666666666655544589999999999999976.58888888775 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.001
     Fer4_12  12 vsgCnlsCkgCfnketwsfksgkeftkel 40 
                 ++gCn+ C +C+ ++++   +++ +++ l
  CCG92815.1 164 AEGCNHPCTFCIIPKIRGRYRSRSIDSVL 192
                 68**********99999777777776333 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.76
     Fer4_12  69 aeallelvkevkeekp.ekdiwlytgytleels 100
                 +e l e+ k+vke+++ +  i+ + g + e+ +
  CCG92815.1 297 RELLFEIRKKVKEAAIrTTLIVGFPGESEEDYQ 329
                 566777788888888766666666666665555 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.45
     Fer4_12  15 CnlsCkgCfnketwsfksgkeft..kelleeiiedlkkesiegl 56 
                 C++ C++ f +    + s +e t  +++++++ e++kk++ +++
  CCG92815.1 332 CDFICEFKFDRLGVFPYSPEEGTkaEKMMDQVAEKVKKRRAKKI 375
                 77777777766666555555554457888888888888776655 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 0.53
     Fer4_12  72 llelvkevkeekpekdiwlytgytleelskkekeellkeidvlv 115
                 + +++++vk++   k+i++    +  e ++     + k+++vl+
  CCG92815.1 360 MDQVAEKVKKRRA-KKIMELQKAIVREKNRG---AIGKKLKVLI 399
                 4456677777776.56777666666666543...5556666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3314.56
//
Query:       CCG92816.1  [L=225]
Description: Endonuclease III [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-24   86.2   0.0    2.9e-24   85.6   0.0    1.3  1  HhH-GPD        HhH-GPD superfamily base excision DNA repair p
    7.7e-06   25.5   0.0      2e-05   24.2   0.0    1.7  1  HHH            Helix-hairpin-helix motif
     0.0021   18.3   6.8     0.0056   17.0   6.8    1.8  1  EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
     0.0023   18.7   0.0     0.0046   17.7   0.0    1.5  1  DUF3349        Protein of unknown function (DUF3349)
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.65   10.0   0.0    2.0  2  DUF2400        Protein of unknown function (DUF2400)


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0   8.1e-28   2.9e-24       1     107 [.      48     183 ..      48     184 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 8.1e-28
                 HHHHHHTTS-HHHHHHHHHHHHHHHSHCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF
     HhH-GPD   1 vsailsqqtsderanriierlferfgfptpedladadeekLrelirelGfyrrKakyikelArilv................................. 66 
                 +++ils++++de +n ++++lf+++   t+ d a+a+ e+L+++i++lGfy++Kak+ik++++il+                                 
  CCG92816.1  48 IATILSARCTDEQVNLVTAKLFQKYH--TAADYAAAPIEELENAIHSLGFYKTKAKNIKNACQILAsqcngevpsqmeklvnlpgvgrktanvvlgnaf 144
                 789*********************86..*********************************************************************** PP

                 S-SSS--TTSHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 gkpdvlivvDvhvrrilkrlrsikekktkkkvekkleelle 107
                 g +d +ivvD+hv+r+  rl++++e k+++k+e++l+++++
  CCG92816.1 145 GIND-GIVVDTHVSRVSFRLGLTQE-KQPEKIEQDLMRCIP 183
                 8778.********************.6*********99887 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   5.7e-09     2e-05       4      28 ..     116     140 ..     115     141 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 5.7e-09
                 HHHTSSHHHHHTSTT-SHHHHHHHH CS
         HHH   4 glipasreeLlalPGVGpktAeaIl 28 
                 g++p  +e L+ lPGVG+ktA+++l
  CCG92816.1 116 GEVPSQMEKLVNLPGVGRKTANVVL 140
                 7888899****************98 PP

>> EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   6.8   1.5e-06    0.0056       1      17 []     202     218 ..     202     218 .. 0.99

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.5e-06
  EndIII_4Fe-2S   1 CTARkPkCeaCPLaDlC 17 
                    C+AR+P C  C L++lC
     CCG92816.1 202 CKARNPDCPHCELNELC 218
                    ***************** PP

>> DUF3349  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-06    0.0046       3      88 ..      20     112 ..      18     116 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHH-TT-B-H...HHHHHHH..HHHCTT--HHHHHHHHHHHHHH--...SSS.BSHHHCHHHHHHHCTS---HHHHHHHHHHHHT CS
     DUF3349   3 lasileWLragYPegvPe...qdyvpLl..alLrrrLsdeevkevaeelvaeaa..eadeavdeedieelitkvteeepseedvarVaarLaa 88 
                 +++il+ Lr+ YP+  P+   ++ + Ll   +L+ r +de+v+ v+++l ++ +  ++  a   e++e++i+++   + ++++++  ++ La+
  CCG92816.1  20 IKKILSILRETYPNAKPAlffRNPLELLiaTILSARCTDEQVNLVTAKLFQKYHtaADYAAAPIEELENAIHSLGFYKTKAKNIKNACQILAS 112
                 689**************844445555553358999*****************96523334444568999999999999999999999998886 PP

>> DUF2400  Protein of unknown function (DUF2400)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.24   8.5e+02      96     202 ..      88     109 ..      44     134 .. 0.63
   2 ?   10.0   0.0   0.00018      0.65     174     194 ..     151     171 ..     149     179 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.24
     DUF2400  96 eaflkaeeeeeeleealeafreaflekekrtrkleflipspekksacKRlnmfLRWmVRkdevDlGlWkeikpseLiiPlDvHvarvarklgllkrkqa 194
                 +a+                                                                                      +lg+ k+k +
  CCG92816.1  88 NAIH-------------------------------------------------------------------------------------SLGFYKTKAK 101
                 3333.....................................................................................3333333333 PP

     DUF2400 195 dlkaalel 202
                 ++k+a+++
  CCG92816.1 102 NIKNACQI 109
                 33333333 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00018
     DUF2400 174 PlDvHvarvarklgllkrkqa 194
                  +D+Hv rv+ +lgl+++kq 
  CCG92816.1 151 VVDTHVSRVSFRLGLTQEKQP 171
                 69***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1635.78
//
Query:       CCG92817.1  [L=306]
Description: (Acyl-carrier-protein) S-malonyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-23   82.7   0.0    3.9e-23   82.4   0.0    1.0  1  Acyl_transf_1  Acyl transferase domain


Domain annotation for each model (and alignments):
>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0   2.2e-27   3.9e-23       3     267 ..       6     273 ..       5     283 .. 0.87

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 2.2e-27
                    EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEE..EE-TTHHHH CS
  Acyl_transf_1   3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiqfvqpaLaavqialaellkskGvrpaav..vGHSlGElA 96 
                    +f GqG+Q  GMG + ++  ++ ++   +a++    q gf ++ +    pe++l+++ + qpaL++   al+  l+   +r ++v   G SlGEl 
     CCG92817.1   6 LFCGQGAQKVGMGKDFFDRYPLVQDLYLEAEQ----QLGFPLSTISFHGPESELTKTYHCQPALFVFGYALYTILRKEIPRLELVgaSGLSLGELT 97 
                    699***************************96....68*************************************9998666665337******** PP

                    HHHHCCSSSHHHHHHHHHHHHHHHHHHT..S-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEE..CC CS
  Acyl_transf_1  97 aavvagalsseeallavvlrsrlmmqla..gpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalve..nv 186
                    a +++ga     al+ v  r rl+++++   pg m a+     ++ e +++     +a +n  ++ v+sgs+ +++e ++  +++   ++v+  +v
     CCG92817.1  98 AYAACGAFDYKTALKLVGERARLIQEASqkHPGTMVALIGstRKQAESIAQMSGCQVANYNAADQQVLSGSHSSIAEAIKLAREAK-IKKVIplDV 192
                    **************************997788999887665444555556889999999*************************99.666661155 PP

                    CEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSS CS
  Acyl_transf_1 187 nvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveisp 267
                    +  +hs++++++  a  + l+++++  p ++ is  +++ +++ e   +   + +  pv+ +e +  +++   + f+eisp
     CCG92817.1 193 SGPFHSRYMEEASMAFFELLKNLTLYIPSIPVISNATASVAQTIEELRQSLSKQICHPVLWEESLHFMLKLDIELFIEISP 273
                    557*****************************9998888775555555555666678999999999889999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2090.25
//
Query:       CCG92818.1  [L=246]
Description: 3-oxoacyl-(acyl-carrier-protein) reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-64  217.3   0.0    2.3e-64  217.2   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    4.8e-58  195.8   0.0    5.6e-58  195.6   0.0    1.0  1  adh_short     short chain dehydrogenase
    1.1e-19   71.0   0.1    1.6e-19   70.5   0.1    1.1  1  KR            KR domain
  ------ inclusion threshold ------
      0.065   12.9   0.0      0.086   12.5   0.0    1.3  1  MAGE          MAGE family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.2   0.0   5.2e-68   2.3e-64       1     233 [.      12     244 ..      12     245 .. 0.96

  Alignments for each domain:
  == domain 1  score: 217.2 bits;  conditional E-value: 5.2e-68
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga +gIG+aiA +la  G ++++   n    +++e++ ++lg +   +++D+++ +q++++++++ ++fg++D+lvnnag +++    +l +s++++
    CCG92818.1  12 GASRGIGKAIAMELALMGTSIAFISKNPIHVEQTEKMLQNLGIRTkgYALDISEISQLKKTIDDILNEFGQIDFLVNNAGKTED--RLLLRMSEADW 106
                   999***************************9***********66556*************************************..*********** PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelle 190
                   d ++d nl++ f ++k + +  + ++ g+i+n+ss+++  ++p+++ y+a+Ka+l++lt+++A+elgp+gi++Na++pg+i+T+++++++   e +e
    CCG92818.1 107 DSVMDLNLKASFFMIKFVGKhFLSRNyGKIINISSISGLTGIPGQANYAASKAGLIGLTKTVAKELGPRGITCNAICPGFIETDMTEHLS--LERKE 201
                   ********************7555557**************************************************************9..77889 PP

                   HHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 191 elearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   ++ +++plgr+g++eeva++a+fL+ +   yitGq +++DgGl
    CCG92818.1 202 KILKEIPLGRFGKAEEVAKLAVFLLGPGGDYITGQSFIIDGGL 244
                   9*****************************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.6   0.0   1.3e-61   5.6e-58       1     191 [.       6     196 ..       6     200 .. 0.98

  Alignments for each domain:
  == domain 1  score: 195.6 bits;  conditional E-value: 1.3e-61
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 kv+l+tGas+GIG+aia ela +G +++++++++  +e++ k l+++g +   +++D+++ ++++++++++ +++g++d LvnNAG t+++   ++se+
  CCG92818.1   6 KVALITGASRGIGKAIAMELALMGTSIAFISKNPIHVEQTEKMLQNLGIRTKGYALDISEISQLKKTIDDILNEFGQIDFLVNNAGKTEDRLLLRMSEA 104
                 89************************************************************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 +w++v+++Nl++ f +++ v +++l+++ G+I+n+sS+ g+ + +g+a Y+AsKa+++glt+++akel p+gi++na++PG+++Tdm++ l+
  CCG92818.1 105 DWDSVMDLNLKASFFMIKFVGKHFLSRNYGKIINISSISGLTGIPGQANYAASKAGLIGLTKTVAKELGPRGITCNAICPGFIETDMTEHLS 196
                 ****************************************************************************************9876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.1   3.6e-23   1.6e-19       3     154 ..       8     159 ..       7     177 .. 0.91

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 3.6e-23
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                  litG+  g+G+++a  la  g  +++++s+++   e   ++ + l++lg++ + +a+D+s+ +++++++++i +e+++i   ++ Ag ++d+ll +m+
  CCG92818.1   8 ALITGASRGIGKAIAMELALMGT-SIAFISKNPIHVE---QTEKMLQNLGIRTKGYALDISEISQLKKTIDDILNEFGQIDFLVNNAGKTEDRLLLRMS 102
                 59******************995.7*******54333...355889999************************************************** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNa 154
                 ++d+++v+   +k++  + +++ +    ++   ++ +SSi+gl+g +gqanYaa  a
  CCG92818.1 103 EADWDSVMDLNLKASFFMIKFVGKhflsRNYGKIINISSISGLTGIPGQANYAASKA 159
                 **************99998887776777999**********************9876 PP

>> MAGE  MAGE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.9e-05     0.086     129     186 ..      30      90 ..      17     131 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.9e-05
        MAGE 129 lslillsggsiseqeLekyLkrlgldenst...skeitklklkldelLkklvkqgYlvrek 186
                  s+ ++s++ i  ++ ek+L++lg+ +++      ei++lk ++d++L+++ + ++lv + 
  CCG92818.1  30 TSIAFISKNPIHVEQTEKMLQNLGIRTKGYaldISEISQLKKTIDDILNEFGQIDFLVNNA 90 
                 588899**********************8899977899*************9999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1669.85
//
Query:       CCG92819.1  [L=89]
Description: Acyl carrier protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-17   63.5   0.0    2.1e-17   63.2   0.0    1.1  1  PP-binding       Phosphopantetheine attachment site
    3.2e-06   27.3   0.7    3.8e-06   27.0   0.7    1.2  1  PP-binding_2     Acyl-carrier
    0.00046   20.6   0.3     0.0005   20.5   0.3    1.2  1  DUF1493          Protein of unknown function (DUF1493)
     0.0037   16.9   0.1     0.0093   15.7   0.1    1.7  1  Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
  ------ inclusion threshold ------
      0.078   13.1   0.0       0.11   12.6   0.0    1.5  1  Ribosomal_L50    Ribosomal subunit 39S


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   5.8e-21   2.1e-17       1      67 []      13      80 ..      13      80 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 5.8e-21
  PP-binding  1 eklrelvaevlgvpleeidpdtdlf.dlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67
                e++++++ e+lgv++e+++p + +  dlG DSl++vel++a+eeef+ve+p+++   ++t++++++y+
  CCG92819.1 13 ERVKNIIVEQLGVNPEQVTPKARFIeDLGADSLDTVELVMAFEEEFNVEVPDEEAEKLQTVGDVIRYI 80
                589*********************978****************************88*********98 PP

>> PP-binding_2  Acyl-carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.7   1.1e-09   3.8e-06      27      83 ..      28      79 ..       5      88 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.1e-09
  PP-binding_2 27 ekvtpsskleelrtredrlwdgldtvefvedveelfdvivsdevadnfetlqeiadl 83
                  e+vtp     + r  ed   d+ldtve+v+  ee f+v v+de a++++t+ ++  +
    CCG92819.1 28 EQVTP-----KARFIEDLGADSLDTVELVMAFEEEFNVEVPDEEAEKLQTVGDVIRY 79
                  44444.....4566678888******************************9888765 PP

>> DUF1493  Protein of unknown function (DUF1493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.3   1.4e-07    0.0005       2      61 ..       9      63 ..       5      84 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.4e-07
     DUF1493  2 dsiekevlelireelgtklfkgkeveltldtdldedlkldeddaedllekffkrfnVdrg 61
                +sie++v + i e+lg+        ++t++ +  edl++d  d+ +l+ +f+++fnV+  
  CCG92819.1  9 KSIEERVKNIIVEQLGVN-----PEQVTPKARFIEDLGADSLDTVELVMAFEEEFNVEVP 63
                579999999999999988.....779*******************************975 PP

>> Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.6e-06    0.0093      15      31 ..      45      61 ..      35      63 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.6e-06
                     HHHHHHHHHHHHHTTHH CS
  Ribosomal_L12_N 15 LElseLvkalEekFGVs 31
                     L+++eLv a+Ee+F+V+
       CCG92819.1 45 LDTVELVMAFEEEFNVE 61
                     799*************7 PP

>> Ribosomal_L50  Ribosomal subunit 39S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.2e-05      0.11      43      78 ..      49      84 ..       5      87 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.2e-05
  Ribosomal_L50 43 aflkrlqqllgheipDykltklhtvkdlveyleevv 78
                   +++  + ++   e+pD +  kl+tv d+++y+ee +
     CCG92819.1 49 ELVMAFEEEFNVEVPDEEAEKLQTVGDVIRYIEENL 84
                   567778888999********************8865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 769.84
//
Query:       CCG92820.1  [L=414]
Description: 3-oxoacyl-(acyl-carrier-protein) synthase 2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-61  208.4   0.1    2.7e-61  207.3   0.1    1.5  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    1.4e-39  134.8   0.8    2.8e-39  133.8   0.8    1.5  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    0.00069   19.1   1.3     0.0013   18.2   0.9    1.6  2  Thiolase_N       Thiolase, N-terminal domain
  ------ inclusion threshold ------
      0.079   13.4   0.4       0.25   11.8   0.1    2.1  3  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.3   0.1   6.1e-65   2.7e-61       2     253 .]       4     248 ..       3     248 .. 0.91
   2 ?   -2.4   0.0      0.63   2.8e+03      86     111 ..     275     300 ..     266     335 .. 0.75

  Alignments for each domain:
  == domain 1  score: 207.3 bits;  conditional E-value: 6.1e-65
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfldvddfdpeffgispreaeamdpqqrllleaaw 97 
                    ++v i Gmg + P+gn v+efw +L++g+++i+ + a  +d++++   + +++g++++          f+p+ + ++p++a++ d++ ++++ aa+
     CCG92820.1   4 RRVIISGMGLVSPNGNCVQEFWTSLINGKSGIGVITA--FDTQAF---DCKFGGEVRN----------FNPSNYFKNPKDARRADRFVQFAMAAAK 84 
                    89*******************************9995..889998...9*******99..........99999999******************** PP

                    HHHHHHTS-HHTCTTGGEEEEEEESST..HH..HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHH CS
  ketoacyl-synt  98 ealedagltpeeldgsrvgvfiGvgag..dy..aalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqsl 189
                    ea+e++gl+ ++ d +++gv++ +g+g  ++  ++++ l  +g +++ sp +++++++n+++g+i+++++l+Gp+++++tAC+S++  +  a +++
     CCG92820.1  85 EAIESSGLDFDREDPTKIGVIVSSGIGglKTleDQHTILLTKG-PSRCSPLMIPMMISNMASGMIAIEYNLQGPNFSIVTACASAAHSIGEAFRMI 179
                    ***************************6622543334444455.89***************************************55555555*** PP

                    HTTS-SEEEEEEEE---SHHHHHHHHHTT.BB-TT.SGGGTTBTTB...-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 190 rsgeadvalaGGvellltpeavagfsaag.llspd.grckafdpka...dGfvlGEGvGavvLkrleda 253
                    +  +ad+++aGG+e+++ p +vagfs+++ l+ ++ +++ka++p++   dGfvl+EG+G+vvL++le+a
     CCG92820.1 180 QVSDADIIVAGGSEASIVPLGVAGFSNMKaLSLRNnEPQKASRPFDrhrDGFVLSEGAGVVVLEELEHA 248
                    *****************************65556679*****************************987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.63
                    -HHHHHHHHHHHHHHHHHTS-HHTCT CS
  ketoacyl-synt  86 dpqqrllleaawealedagltpeeld 111
                    dp+   + +a++ a+++a l+p+++d
     CCG92820.1 275 DPSGEGATRAMEMAMRKAHLNPQDID 300
                    55555667788888888888887764 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.8   6.2e-43   2.8e-39       1     117 [.     256     370 ..     256     371 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.8 bits;  conditional E-value: 6.2e-43
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      ya+i g++++ d++h+++++p+ge++ ra+e a+++a+++p+d+dy++ah+t+t  gD  E+ a+kk+fg++a++  ++++S+Ks++GHl++Aa
       CCG92820.1 256 YAEIIGYGLSADAHHITAPDPSGEGATRAMEMAMRKAHLNPQDIDYINAHATSTIPGDICETMAIKKAFGKHAYS--IPISSTKSMTGHLLGAA 347
                      8************************************************************************55..***************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      G++eli++++++++gvippt+nl
       CCG92820.1 348 GAVELIACIKTIQEGVIPPTINL 370
                      **********************8 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.9   2.9e-07    0.0013      76     113 ..     156     193 ..     138     209 .. 0.87
   2 ?   -3.6   0.0       1.3   5.8e+03      29      48 ..     283     302 ..     281     309 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.9e-07
                 SEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEE CS
  Thiolase_N  76 vpavtvnkvcsSglkavalaaqsiaageadvvvagGvE 113
                  p   +  +c+S+++++ +a ++i++ +ad++vagG E
  CCG92820.1 156 GPNFSIVTACASAAHSIGEAFRMIQVSDADIIVAGGSE 193
                 466778899***************************99 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.3
                 HHHHHHHHHHTS-GGGCCEE CS
  Thiolase_N  29 ealkallekagvdpeevdev 48 
                 +a++ ++ ka ++p+++d++
  CCG92820.1 283 RAMEMAMRKAHLNPQDIDYI 302
                 68899999999999999987 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.6   7.1e+03      55      55 ..     223     223 ..     177     255 .. 0.49
   2 ?   -2.6   0.0       1.7   7.4e+03      42      92 ..     241     300 ..     236     311 .. 0.47
   3 ?   11.8   0.1   5.7e-05      0.25      26      45 ..     393     412 ..     381     414 .] 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.6
  KAsynt_C_assoc  55 s 55 
                     +
      CCG92820.1 223 P 223
                     2 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.7
  KAsynt_C_assoc  42 iLksnkkekrkeesk.........eeslprLlvlsgrteeaveallekleehlldaells 92 
                     +L++ +++k+++++          +++ +++ +     e a +a+  ++++ +l++++++
      CCG92820.1 241 VLEELEHAKKRNAPIyaeiigyglSADAHHITAPDPSGEGATRAMEMAMRKAHLNPQDID 300
                     555555555554443333333333333333333333334444555555555555555555 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 5.7e-05
  KAsynt_C_assoc  26 ivgvNsfGfGGsnvHviLks 45 
                     i+  NsfGfGG n+ +i+k 
      CCG92820.1 393 IAMNNSFGFGGHNASLIIKR 412
                     45559************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2732.64
//
Query:       CCG92821.1  [L=80]
Description: 50S ribosomal protein L31 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-30  102.8   0.2      1e-29  102.6   0.2    1.1  1  Ribosomal_L31  Ribosomal protein L31


Domain annotation for each model (and alignments):
>> Ribosomal_L31  Ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.2   5.6e-34     1e-29       1      67 []       1      64 [.       1      64 [. 0.99

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 5.6e-34
  Ribosomal_L31  1 mKkgiHPeyrevvvkcacgeefltrStlkekpeikvdvcsksHPfYtGkqklvdtaGrvekFkkryg 67
                   mKkgiHP+y+e++++cacg+ ++t+St   kp+i++ +c ++HP++tG+qk+vdtaGrvekF +r+g
     CCG92821.1  1 MKKGIHPNYQETTISCACGAVYTTKST---KPSIRIGICASCHPLFTGQQKFVDTAGRVEKFARRFG 64
                   9**************************...************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 592.00
//
Query:       CCG92822.1  [L=378]
Description: peptide chain release factor 1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-62  209.6   3.1    3.7e-62  209.6   3.1    2.0  2  PCRF           PCRF domain
    3.1e-40  136.7   0.4    3.1e-40  136.7   0.4    2.0  2  RF-1           RF-1 domain
     0.0085   16.3   2.0     0.0085   16.3   2.0    3.4  3  ABC_tran_CTD   ABC transporter C-terminal domain
  ------ inclusion threshold ------
      0.032   14.1   2.6      0.065   13.1   1.8    1.9  2  Glyco_H_20C_C  Glycoside Hydrolase 20C C-terminal domain
      0.089   13.1   0.5      0.089   13.1   0.5    2.3  3  HTH_WhiA       WhiA C-terminal HTH domain
       0.25   11.4   9.1       0.76    9.9   3.7    2.8  2  MYO10_CC       Unconventional myosin-X coiled coil domain


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.6   3.1   1.2e-65   3.7e-62       1     193 []      10     206 ..      10     206 .. 0.95
   2 ?    0.5   0.1      0.16   4.7e+02      69     107 ..     260     298 ..     247     312 .. 0.58

  Alignments for each domain:
  == domain 1  score: 209.6 bits;  conditional E-value: 1.2e-65
                 HHHHHTTTTTST.-GGGTT.TGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT......-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSS CS
        PCRF   1 leeeleelekklsdpevwe.dqekakklskelaeleeivealeeleealedleeakelle..edeelaelaeeeleelekeleeleeelkklLlpkden 96 
                 +++++++l+++ls++++ + +++k  ++++e+++l+ei++ + +l++++e  +++ +l +  +d el+ela++e+e+l+++++el+  + + L p++e+
  CCG92822.1  10 IQKKFDKLQTELSKEDLYSsNPAKTIEMAREHTRLKEILDLYGQLTTLQEAKASVVSLTKetADVELQELAQHEIEKLDQKIHELTVAVLSSLFPSEEE 108
                 5799***********99862689999****************************999995589*******************************97665 PP

                 .TTSEEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEESSS.SEEEEEEEEESTTHHHHHGGG-EEEEEEEE-TTSSS--EEEEEEEE CS
        PCRF  97 .deknaileiraGaGGdeaalfaedLlrmYtryaerkgwkvevldaseeeagGikevtleiegegaYgkLkfEsGvHRvqRvpetesqgrihTStatV 193
                   +kn i+eiraG+GG+eaalfa+dL+rmY++yae+kgwk e+l+ +++e+gG+ke++++i+g++a++kLk+EsGvHRvqRvp+tesqgrihTStatV
  CCG92822.1 109 kSSKNLIIEIRAGTGGEEAALFASDLYRMYSKYAEKKGWKQELLHFHPSELGGLKEIIFSIQGKEAFKKLKYESGVHRVQRVPATESQGRIHTSTATV 206
                 1567*********************************************************************************************9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.16
                 GGGTHHHHHHHHHH..HHHHHT-..SSSTTSEEEEEEEE CS
        PCRF  69 eeeleelekeleeleeelkklLlpkdendeknaileira 107
                 ++e ++l+++ ++l+    +lL+ k+e+++++  +e ++
  CCG92822.1 260 QDERSQLKNREKALKILKARLLSKKEEEEAQKRAMERKS 298
                 445555555555553333344444444444454454444 PP

>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2         2   5.9e+03      64      84 ..      16      24 ..       2      49 .. 0.40
   2 !  136.7   0.4     1e-43   3.1e-40       2     116 .]     214     323 ..     213     323 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2
                HHHHHHHHHHHHHCCCCCHTT CS
        RF-1 64 rLkaklkekeleeekeeekkr 84
                +L+++l +            +
  CCG92822.1 16 KLQTELSK------------E 24
                22222222............1 PP

  == domain 2  score: 136.7 bits;  conditional E-value: 1e-43
                 CCCCE--GGGEEEEEE---SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-.S.-S---S.-- CS
        RF-1   2 eieieidekdleidtfrssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkkekkkigtgs.se 99 
                 eie++i+++dl+i+++r++G+GGQ VN+t+saV++ h+p+g i+v+cq+eRsq kNrekAl++Lka+l +k   +e+ee++kr   ++k+ +g+g+  e
  CCG92822.1 214 EIELNIKPEDLRIEVCRAGGPGGQGVNTTDSAVQIFHIPSG-IMVRCQDERSQLKNREKALKILKARLLSK---KEEEEAQKRA-MERKSMVGSGErTE 307
                 799**************************************.8*************************665...3333333333.3446789******* PP

                 ECEEEECGCTTEEEETT CS
        RF-1 100 kiRtynkkpqsrvkdhr 116
                 kiRtyn+ pq+rv+dhr
  CCG92822.1 308 KIRTYNF-PQGRVTDHR 323
                 *******.********9 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   2.0   2.8e-06    0.0085      13      58 ..       3      49 ..       2      59 .. 0.90
   2 !    5.5   1.1    0.0068        20      14      40 ..      81     107 ..      70     114 .. 0.67
   3 ?   -2.8   1.1       2.6   7.7e+03       5      55 ..     284     288 ..     264     299 .. 0.49

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.8e-06
  ABC_tran_CTD 13 leaeIeaLEeeiaeleaeladpely.sdpeklaelsaeleeleaeLe 58
                  le+ Ie+++++  +l++el++++ly s+p+k  e  +e ++l++ L+
    CCG92822.1  3 LERYIEKIQKKFDKLQTELSKEDLYsSNPAKTIEMAREHTRLKEILD 49
                  7899*********************8888**9999999888887665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0068
  ABC_tran_CTD  14 eaeIeaLEeeiaeleaeladpelysdp 40 
                     eIe+L+++i el+ ++ +  + s +
    CCG92822.1  81 QHEIEKLDQKIHELTVAVLSSLFPSEE 107
                   235888888888888777766555555 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.6
  ABC_tran_CTD   5 keqreleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleelea 55 
                   ke+                                              e+
    CCG92822.1 284 KEE----------------------------------------------EE 288
                   222..............................................22 PP

>> Glyco_H_20C_C  Glycoside Hydrolase 20C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.8   2.2e-05     0.065      35     125 ..      10      96 ..       6     121 .. 0.86
   2 ?   -1.8   0.0      0.78   2.3e+03     173     188 ..     357     372 ..     323     377 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.2e-05
  Glyco_H_20C_C  35 LlglfdkqvagldlekhYeklaekleelaekskelnelfelykkLakvLalKaelgirirkaYrakdreeLkklaeeelprllerldelrk 125
                    +   fdk   +l++e+ Y+   +k  e+a+++++l+e+++ly +L ++ + Ka +    ++    +   eL++la++e+++l ++++el+ 
     CCG92822.1  10 IQKKFDKLQTELSKEDLYSSNPAKTIEMAREHTRLKEILDLYGQLTTLQEAKASVVSLTKE----TADVELQELAQHEIEKLDQKIHELTV 96 
                    566788888999999******9******999*********************987665554....44469****************99875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.78
  Glyco_H_20C_C 173 eELeeerlpydpeeke 188
                    +EL ee +p++ +e++
     CCG92822.1 357 QELAEENIPFTATEDD 372
                    5888888888887775 PP

>> HTH_WhiA  WhiA C-terminal HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.5   7.5e+03      26      42 ..       7      21 ..       5      25 .. 0.64
   2 ?   13.1   0.5     3e-05     0.089       9      63 ..      28      82 ..      23      92 .. 0.93
   3 ?   -2.6   1.0       2.4   7.2e+03      21      49 ..     264     292 ..     260     298 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.5
                HHHHHHHT-GGGS-HHH CS
    HTH_WhiA 26 ielieekkgleklpekl 42
                ie+i++k  ++kl+ +l
  CCG92822.1  7 IEKIQKK--FDKLQTEL 21
                5666665..77777766 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3e-05
                HHHHHHHHHHHHHHHHHHHHHHHHT-GGGS-HHHHHHHHHHHH-TTS-HHHHHHT CS
    HTH_WhiA  9 taNlkKtvkaaakqieaielieekkgleklpeklkevaelRlenpdaSLkeLgel 63
                 +N  Kt++ a ++++  e+++  ++l +l+e   +v+ l +e  d+ L+eL+++
  CCG92822.1 28 SSNPAKTIEMAREHTRLKEILDLYGQLTTLQEAKASVVSLTKETADVELQELAQH 82
                6899************************************************986 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHT-GGGS-HHHHHHHHHH CS
    HTH_WhiA  21 kqieaielieekkgleklpeklkevaelR 49 
                 +q+++ e+  +  + + l++k +e a+ R
  CCG92822.1 264 SQLKNREKALKILKARLLSKKEEEEAQKR 292
                 56666677777767777777777777666 PP

>> MYO10_CC  Unconventional myosin-X coiled coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.023        68      12      25 ..       3      16 ..       1      28 [. 0.76
   2 ?    9.9   3.7   0.00025      0.76       2      51 ..      40      89 ..      39      90 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.023
    MYO10_CC 12 LErEIerLqrqked 25
                LEr Ie+ q++ ++
  CCG92822.1  3 LERYIEKIQKKFDK 16
                9********98544 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00025
    MYO10_CC  2 EsrQmEEILRLErEIerLqrqkedqvsslceesrqelqrlRdeelkrLek 51
                E   + EIL L      Lq  k   vs+  e+   elq+l   e+++L +
  CCG92822.1 40 EHTRLKEILDLYGQLTTLQEAKASVVSLTKETADVELQELAQHEIEKLDQ 89
                6667789****************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1458  (0.0813208); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 2570.42
//
Query:       CCG92823.1  [L=275]
Description: Methylase of polypeptide chain release factors [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-16   59.7   0.1    6.7e-16   58.6   0.1    1.6  1  PrmC_N           PrmC N-terminal domain
    6.2e-09   35.8   0.0      9e-09   35.3   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    1.1e-08   34.9   0.0    1.9e-08   34.1   0.0    1.3  1  MTS              Methyltransferase small domain
    2.1e-08   34.8   0.0    6.4e-08   33.2   0.0    1.8  2  Methyltransf_25  Methyltransferase domain
    5.5e-06   27.0   0.0    1.3e-05   25.9   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
    0.00013   21.8   0.0    0.00028   20.7   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
    0.00016   21.2   0.0    0.00021   20.8   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00024   21.7   0.0    0.00082   20.0   0.0    1.8  2  Methyltransf_11  Methyltransferase domain
    0.00032   20.2   0.0    0.00054   19.5   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
      0.006   15.9   0.0     0.0086   15.4   0.0    1.2  1  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.026   14.3   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
      0.019   14.9   0.0      0.073   13.0   0.0    1.8  2  Methyltransf_18  Methyltransferase domain
      0.065   13.0   0.0       0.13   12.0   0.0    1.6  1  Methyltransf_16  Lysine methyltransferase
       0.12   11.9   0.0       0.19   11.2   0.0    1.2  1  DOT1             Histone methylation protein DOT1


Domain annotation for each model (and alignments):
>> PrmC_N  PrmC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.1   5.2e-19   6.7e-16       1      71 []       6      76 ..       6      76 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 5.2e-19
      PrmC_N  1 eaLreaearLkaagieeaeldAelLlahvlglsrsdlllrgerelteeqlerfeelierRaarePlqyIlG 71
                ++ ++a a+L++ +i++++l+ el+++++l+++r  l+++++  l+++ ++   e +erRa++eP++yIlG
  CCG92823.1  6 QLFKKALAYLEEKNIDSPRLSCELIFSDALQIDRLALYTNPSSSLESKIADLIWERVERRARGEPVAYILG 76
                6889999***************************************************************9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0     7e-12     9e-09       6      81 ..     115     184 ..     112     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 7e-12
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsn 81 
                      +vlD+G+G+G+++  +a +++p+  ++G Di  +a++ A++n  k++l+n+ F q +  +  ++    + f l+++n
       CCG92823.1 115 PVLDIGTGSGAIAVTIA-QAYPNLSFYGTDICSNALQIAEKN--KKKLKNLFFYQDNLLDrPPC----DFFELMIAN 184
                      69***************.99*********************9..889*********99994443....678888887 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.5e-11   1.9e-08      26     107 ..     108     187 ..      98     192 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1.5e-11
                 HCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE---S CS
         MTS  26 tlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsNPPf 107
                  lp  l+g vlD+G+G G++++++a+++p+++   +d+  +Al++a++n ++ k ++ +++ ++l+  + + f+l++ N P+
  CCG92823.1 108 LLPR-LTGPVLDIGTGSGAIAVTIAQAYPNLSFYGTDICSNALQIAEKNKKKLK-NLFFYQDNLLDRPPCDFFELMIANLPY 187
                 4555.8899****************************************98877.599999******999999****99885 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0     5e-11   6.4e-08       1      83 [.     116     194 ..     116     201 .. 0.86
   2 ?   -2.0   0.0       4.8   6.1e+03      49      61 ..     233     245 ..     206     268 .. 0.48

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 5e-11
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedle 83 
                      vLd+G+G+G ++  +a+++++ +++g+Di +++l++a+++ ++ + n+ f+q ++ d p  d  f l++++  l +l+ e ++
       CCG92823.1 116 VLDIGTGSGAIAVTIAQAYPNLSFYGTDICSNALQIAEKNKKKLK-NLFFYQDNLLDRPPCD-FFELMIAN--LPYLPSEIIP 194
                      9******************99******************996543.*********9999766.99999995..6777766555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.8
                      EEEESBCCGBSSS CS
  Methyltransf_25  49 efvqgdaedlpfe 61 
                       ++ gd + lp +
       CCG92823.1 233 ILEIGDGQFLPVK 245
                      2344444445543 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   9.8e-09   1.3e-05       1      56 [.     117     172 ..     117     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 9.8e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnveleal 56 
                      L+iG+G+G+++  ++++ p+++++g+Di ++a++ a++  +k +n+++ + +l ++
       CCG92823.1 117 LDIGTGSGAIAVTIAQAYPNLSFYGTDICSNALQIAEKNKKKLKNLFFYQDNLLDR 172
                      8********************************88888888888877776666554 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.2e-07   0.00028      14      71 ..     106     163 ..      95     185 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.2e-07
  Methyltransf_23  14 erllpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqf 71 
                      ++ll   r  g vLdiG+G+G  +  +++     s++g D++++a +iaek kk  k  f
       CCG92823.1 106 MELL--PRLTGPVLDIGTGSGAIAVTIAQAYPnlSFYGTDICSNALQIAEKNKKKLKNLF 163
                      4555..377899*********8888886664446***************94444433333 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.7e-07   0.00021     160     206 ..     111     158 ..      96     202 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.7e-07
        PrmA 160 kegeevlDvGtGSGiLaiaaakL.gakkvvavDiDevAvkvakeNael 206
                 + +  vlD+GtGSG +a+  a+     + +++Di + A+++a++N ++
  CCG92823.1 111 RLTGPVLDIGTGSGAIAVTIAQAyPNLSFYGTDICSNALQIAEKNKKK 158
                 555679***********997765156689****************874 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   6.4e-07   0.00082       1      43 [.     117     161 ..     117     189 .. 0.85
   2 ?   -1.7   0.0       3.8   4.9e+03      30      59 ..     214     246 ..     206     265 .. 0.54

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.4e-07
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT- CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl 43 
                      Ld+G+G+G++a  +a+++   + +g+D++ ++l++a++++++ ++
       CCG92823.1 117 LDIGTGSGAIAVTIAQAYpnLSFYGTDICSNALQIAEKNKKKLKN 161
                      8**************9999*****************999999876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.8
                      HHHHHHHHCCHHT-EEEE...TTEECCCTSS-T CS
  Methyltransf_11  30 mlklakekaseeglkvef...vvadaeklpfed 59 
                       l+l ++ ++++++++++     +d + lp++ 
       CCG92823.1 214 GLELIRKFIPQAKNRCRYlilEIGDGQFLPVKQ 246
                      555555555555554444111333333355554 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.2e-07   0.00054       5      60 ..     116     169 ..     114     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.2e-07
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-C CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgda 60 
                     vl+iG+G+G + v++A++ P+ +f G +i ++ ++ + k  ++++lkNl   + + 
      CCG92823.1 116 VLDIGTGSGAIAVTIAQAYPNLSFYGTDICSNALQIAEK--NKKKLKNLFFYQDNL 169
                     79***************************9999875544..577899998887775 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.7e-06    0.0086      66      96 ..     116     146 ..      98     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.7e-06
                     EEEET-TTSHHHHHHHHH-TT-EEEEEE-HH CS
  Methyltransf_2  66 lvDvGGGtGalakaivsayPtikvivfDlpe 96 
                     ++D+G G+Ga+a +i++ayP+++    D+ +
      CCG92823.1 116 VLDIGTGSGAIAVTIAQAYPNLSFYGTDICS 146
                     68********************999999864 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     2e-05     0.026      21      62 ..     108     149 ..      97     165 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2e-05
      DUF938  21 ylakttervLEiasGtGqHAvffApalpnlkwqpsdqdeelr 62 
                  l++ t  vL+i++G+G  Av +A+a pnl +  +d  ++  
  CCG92823.1 108 LLPRLTGPVLDIGTGSGAIAVTIAQAYPNLSFYGTDICSNAL 149
                 55666667***************************9877765 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.7e-05     0.073      17      61 ..     115     159 ..     102     167 .. 0.88
   2 ?   -1.1   0.0       1.3   1.6e+03      95     136 ..     217     256 ..     210     260 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.7e-05
  Methyltransf_18  17 rvaDiGtDHgylpiylvkegkakkviasDinegplekakenieka 61 
                       v+DiGt  g +++ +++     + + +Di +++l+ a++n +k 
       CCG92823.1 115 PVLDIGTGSGAIAVTIAQAYPNLSFYGTDICSNALQIAEKNKKKL 159
                      799*************************************98875 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.3
  Methyltransf_18  95 lileILeeakeklkkikklilqpns.eaeelRkylvengfkie 136
                      li++ + +a   +++++ lil+    +   +++ lv++gf+++
       CCG92823.1 217 LIRKFIPQA---KNRCRYLILEIGDgQFLPVKQLLVDHGFSVV 256
                      344444433...5566678887554145578999999999876 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0001      0.13      49      90 ..     115     157 ..      80     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
  Methyltransf_16  49 svlELGsGtGlvGlavaellpeakviltDlee.llellkknie 90 
                       vl++G G+G + +++a+++p+++ + tD+   +l++ +kn +
       CCG92823.1 115 PVLDIGTGSGAIAVTIAQAYPNLSFYGTDICSnALQIAEKNKK 157
                      59***************************85449999999955 PP

>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015      0.19      47      92 ..     117     162 ..     108     166 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                 EEES-TTSHHHHHHHHHH--SEEEEEE--HHHHHHHHHHHHHHHHH CS
        DOT1  47 vDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekqkeelkkr 92 
                 +D+G G G + + +a ++     +G +i  na ++aek+k+ lk++
  CCG92823.1 117 LDIGTGSGAIAVTIAQAYPNLSFYGTDICSNALQIAEKNKKKLKNL 162
                 7***************999999*******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2226.64
//
Query:       CCG92824.1  [L=421]
Description: UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-98  328.5   0.1    5.8e-98  328.3   0.1    1.0  1  EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvin


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.3   0.1  3.2e-102   5.8e-98       2     417 .]       7     407 ..       6     407 .. 0.94

  Alignments for each domain:
  == domain 1  score: 328.3 bits;  conditional E-value: 3.2e-102
                    ECSS--EEEEE--B-HHHHHHHHHHHGGGBSS.EEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-HHHHTT-GGGGGGHH CS
  EPSP_synthase   2 ekgkrlegevkvpGsksisnralllAaLaege.stitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeapeelvldlgnsgtalr 96 
                    ++g++l g+v+++G  ++s++++l+A+L++ e + i  ++d++D+r+mle+l+ Lga+++    ek +v+v+ ++ +  ap++lv+++++s++ l+
     CCG92824.1   7 KGGNPLIGKVTISG-SKNSALPILAATLLTPEeCIIHRVPDLSDIRYMLEILKFLGAQVHY---EKGTVRVKNKIINWIAPYDLVRKMRASICILG 98 
                    67899*********.789***********9888***********************75543...466677777778888888************** PP

                    HHHHHHSEESSEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEETSS-BEEEEETSS.TTHHHHHHHHHHHTTSBSEEEEES-TTH CS
  EPSP_synthase  97 lLtallalasgevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkglklkgveikaev.sSqqvtsllllaallaegtteleelase 191
                    +L+a++++a  +v+L+G++ i+ RPid ++++L++lGa+i++ +g++ a+    +l++++++++++  s++  t ++++aa ++egtt++e++a+e
     CCG92824.1  99 PLIARCGKA--RVSLPGGCVIGDRPIDLHISGLQKLGANIDIIKGDVVAQGG--QLRGTTINLRGPYgSTVLGTDNVMMAACRSEGTTIIEGAACE 190
                    *******98..9*********************************9988875..799********97355778*********************** PP

                    HHHHHHHHHHHHTT-EEEETTSSEEEEEE--SSB--EEEE--B-HHHHHHHHHHHHHTT-EEEEES--GGGGHHH..HHHHHHHHTTEEEEEESTS CS
  EPSP_synthase 192 psiddtlkmlkkfgikietsgteesitvkGkeklpgteyvvegDassAayflvaAaitggevtvenvginslqGdiealdeilekmgaeitqeeda 287
                    p+++d++k+l ++g+ki++ g+++ + ++G ++l+g ey+++ D+++A++f+v Aa+t+g+  +e ++ n+++     + e+l++ g++i+ ee +
     CCG92824.1 191 PEVEDLAKFLVSMGAKISGIGSQR-LIIEGIKELHGSEYTIITDRIEAGTFAVGAAMTKGDLFLEQAPVNHMT----SVLEKLRDCGVTIQVEE-K 280
                    *******************99987.************************************************....7788*************.8 PP

                    EEEEEETTS--BEEEEEBGSTTSBHGGGHHHHHHHHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEEEEEEEE.EB-EEEE-TTSTTT CS
  EPSP_synthase 288 sivvgpsglklkdvdietlpdeaptlavlaafaegttviegiaelrvketdrlaamateLrklGaeveeeedgliiipaekqlkgaevesydDhRi 383
                     ++v++ +  lk+ +iet  +++++++++a+f +  t++ g +++ ++++ +++++++eL++lGa++e +++ ++i++ e  l+ga v++  D+R+
     CCG92824.1 281 GLRVSR-SGPLKAFEIETSSYPGFPTDMQAQFCAMATIACGKSKVVENIFPNRFMHISELKRLGANIELLKNEVHIYGIER-LSGAPVMAS-DLRA 373
                    888888.68999***************************************************************999885.*********.**** PP

                    THHHHHHHHHSBSEEEEETTHHHHHHSSSHHHHH CS
  EPSP_synthase 384 amalalaglvaegeveiddiectdksfpefeekL 417
                    ++al+laglva++++e+ +++++d++++++ ekL
     CCG92824.1 374 SAALVLAGLVADNTTEVHRVYHIDRGYEKIDEKL 407
                    *****************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2795.20
//
Query:       CCG92825.1  [L=174]
Description: phosphopantetheine adenylyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-17   62.3   0.0    6.8e-17   62.0   0.0    1.1  1  CTP_transf_like  Cytidylyltransferase-like
  ------ inclusion threshold ------
      0.056   13.1   0.0      0.089   12.5   0.0    1.4  1  Citrate_ly_lig   Citrate lyase ligase C-terminal domain


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   7.6e-21   6.8e-17       1     142 [.       5     135 ..       5     136 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 7.6e-21
                      EEEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-SCSSTHHHHHHHHHHH...TTCTTEEEEEEESEHHHHHHHTTTTEEEEEEEH CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkkkplasaeeRlemlela...kevdevisvdpweltrevlkklkpdklylviga 91 
                      l++GtFDpi+lGH +++ +a +l++e +i+g  s ++pk   ++l+ +eeR+  ++l     + +++   +   lt ++ k+l++   ++++g 
       CCG92825.1   5 LYPGTFDPITLGHVDVILKAVRLFDE-VIIG-VSGQSPK---ETLFQLEERISLVQLTikeLSFQNLRALSYTGLTVDFAKQLGCC--AIIRGL 91 
                      699***********************.7775.5777777...57**************6555566777777888888*********..****** PP

                      HHHHHHHCHHHHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHHHHH CS
  CTP_transf_like  92 dvledfsewkeleeilgnvklvvvsrpekqanvllkaekrtngiSstkire 142
                      ++++df  + e++  l n++l  + ++     ++l++e +    Ss+ ++e
       CCG92825.1  92 RAVSDF--ESEFQLALMNRRLEPKIET-----IFLMPEDNHIYLSSSLVKE 135
                      ******..****************888.....999999999999***9987 PP

>> Citrate_ly_lig  Citrate lyase ligase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.9e-06     0.089       9      58 ..      11      62 ..       9     117 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.9e-06
  Citrate_ly_lig  9 nPftlGhryLvekaakendvvhlfvvke..dkslfsyeerlklvkkGikdlk 58
                    +P tlGh  ++ ka +  d v++ v  +   + lf+ eer++lv+  ik+l+
      CCG92825.1 11 DPITLGHVDVILKAVRLFDEVIIGVSGQspKETLFQLEERISLVQLTIKELS 62
                    69*********************99765226789**************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1314.66
//
Query:       CCG92826.1  [L=194]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1574.48
//
Query:       CCG92827.1  [L=452]
Description: Acid phosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-94  314.6   0.0      1e-93  314.4   0.0    1.0  1  Phosphoesterase  Phosphoesterase family


Domain annotation for each model (and alignments):
>> Phosphoesterase  Phosphoesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.4   0.0   5.8e-98     1e-93       2     355 ..      33     433 ..      32     434 .. 0.88

  Alignments for each domain:
  == domain 1  score: 314.4 bits;  conditional E-value: 5.8e-98
  Phosphoesterase   2 khvViivqENrsfdhlfGtlkgvrg.iddasplaqqd..G...........vkkqalnkaev....sapfsldtakglsaqvvvedpehsfqai 77 
                      ++++ii+qEN+sfd+lfGt+++v+g  +++ +l q+d  G           + +++++k       + pf l+++   ++    +dp hsf+ +
       CCG92827.1  33 HNIIIIYQENHSFDNLFGTMEKVDGiANAKHALLQEDkqGlpyktlppiydPVNKTIDKRFSrplpNGPFLLNDFLTINS--PIPDPIHSFYRN 124
                      579**********************6677777666666898877777666633333333333677799******995333..589********* PP

  Phosphoesterase  78 qeqwnggrndkfvaaaes.elvmgyfkredipvlwelaqeftlcDryFssvlggtepNrlflisgts................dpsGt...... 148
                      q q+ngg+ ++fva++++  l+mgy++ + +p+ +++a+++t+ D++F++++gg+ +N+++l+++++                d++G+      
       CCG92827.1 125 QLQINGGKCNRFVAWSNTgGLPMGYYQSQSLPL-YAYAKQYTVLDHFFQAAFGGSFLNHIWLVAAQTpywgeapeelksklefDNQGKwigikk 217
                      ******************99************9.9********************************888888888888888877777999999 PP

  Phosphoesterase 149 ....................eggpsladpkktvlkgftqktigerLsekgvswaiYqeal........dnlakskvapfnyyvrklkklearrk 214
                                          +   s+++++ ++l++ t +tig+rLse+g+swa+Y + +        d+ ++++ +pf y+++    +e  +k
       CCG92827.1 218 egpltpdgyvvgtvqsvyqpH---SSTQKESHLLPPLTIPTIGDRLSEAGISWAWYAGGWndalqgraDPSFQFHHQPFVYFKNFGGSTE-AKK 307
                      999999999**9999875332...33335899****************************888887777777777779988877666666.555 PP

  Phosphoesterase 215 alkqlglaakqlekfkkdvkngkLPqvsfikpngandeHpg.advaagdklikevlealtsspqwaktllivtyDEngGfyDhVappvapvsdp 307
                      ++ + +       +f  d+k+g+LPqv f+kp g ++eHpg ++++ag+k+  e++eal++sp+w++ l+i+tyDE gGf+DhV+pp       
       CCG92827.1 308 KFLKDET------DFFLDIKKGSLPQVCFVKPLGRYNEHPGySTIEAGEKHAIELIEALKNSPYWNNLLIILTYDEFGGFWDHVPPP------- 388
                      5555555......7*************************************************************************....... PP

  Phosphoesterase 308 dglkGdpyglgvrvPllviSpyakkgtvdhelfdhtSvlrfiekrfgl 355
                         k+d++g+g+r+P+l+iSp+ ++g+v+++ +d+tS+l++ie rf+l
       CCG92827.1 389 ---KNDRWGPGPRIPALLISPFCEGGKVNSKYYDTTSILKLIEWRFNL 433
                      ...899*****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3638.10
//
Query:       CCG92828.1  [L=146]
Description: NUDIX family hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-17   63.7   0.3      2e-17   63.5   0.3    1.1  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.3   1.1e-21     2e-17       3     128 ..       5     129 ..       3     132 .. 0.73

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 1.1e-21
                 EEEEEEEEEETTSE...EEEEEESSSSTTTEESSEEECBTTS.HHHHHHHHHHHHHHSEEE.EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSGC CS
       NUDIX   3 rravgvvllnekge...vLlvrrskkpfpgWelPgGkvepgE.tpeeAArREleEEtGlea.ellellgrlhylapydgpygdeheilyvfleevegel 96 
                 +ra+g v++ e++     Ll+r +    ++W++P+G+++ gE ++ eAA+RE+eEEt l++ e    l+   ++  ++++y   +   ++ ++ +ege+
  CCG92828.1   5 TRAAGFVIYKEENGkpfYLLLRAY----RNWDFPKGTIQSGEsDF-EAALRETEEETTLNCfEFPFNLE---SK--ETEVYSKGKISKFFIAKLKEGEP 93 
                 689999999999666966666655....78************999.*************7745444444...33..33344434455566669999999 PP

                 SST.....STTTEEEEEEEEHHHHHHHHTHCTHHHHH CS
       NUDIX  97 epn.....denevsevrwvpleellkeklaaesrkll 128
                  ++      ++e++e+rwv++ee+ ++ l  +  ++l
  CCG92828.1  94 VLRpspelGRAEHHEWRWVNFEEA-LKLLPIHLIPIL 129
                 999555555666************.666555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1117.42
//
Query:       CCG92829.1  [L=60]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.075   13.1   0.2       0.11   12.6   0.2    1.3  1  OmdA      Bacteriocin-protection, YdeI or OmpD-Associated


Domain annotation for each model (and alignments):
>> OmdA  Bacteriocin-protection, YdeI or OmpD-Associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   5.9e-06      0.11       6      39 ..       5      42 ..       1      47 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.9e-06
        OmdA  6 edlaaaL....dadpaakaaFealtpsyrreylrwies 39
                ed+ +aL    ++d++ k+++e+++ s++ ++   +e+
  CCG92829.1  5 EDFNKALklfeEEDQRWKEFYEKMSFSQKVQFTLAVED 42
                899999988988999**************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 501.33
//
Query:       CCG92830.1  [L=602]
Description: 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-18   67.5  17.4    1.5e-18   67.5  17.4    3.2  3  PMT_2     Dolichyl-phosphate-mannose-protein mannosyltransfer


Domain annotation for each model (and alignments):
>> PMT_2  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5  17.4   8.5e-23   1.5e-18       2     156 ..      88     246 ..      87     249 .. 0.91
   2 ?    0.4   0.8     0.037   6.6e+02      77     114 ..     319     354 ..     294     382 .. 0.70
   3 ?    1.4   1.4     0.019   3.3e+02     103     155 ..     411     467 ..     400     469 .. 0.69

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 8.5e-23
       PMT_2   2 hPPliawllalftklfgfselairlvsalagvltilllyllarrlfgkraallaalllavvplfvalsalftpdaplvllwalalylllraleknklky 100
                 +PPl++w + +++klfg +e+a+rl++ +a+vl i+++yll   + g++ +lla+l+l   + f++ ++++ p+ ++ ++++ a+++++  + +++ +y
  CCG92830.1  88 KPPLVYWSILISYKLFGINEFAARLPEGIATVLWIIGIYLLGSAMGGEKLGLLACLMLGSAFGFFIFTHILMPEPFFSAAVTYAILFIYLGIRDGRKRY 186
                 8************************************************************************************************** PP

       PMT_2 101 wllagvlfGlgflsKytaallliaall....yllis.arr.ilkekkpylalllalllfspv 156
                 +l+a ++++lg l K   a+l++ +l      l++   r+ +l+    + +++l++l+f+p+
  CCG92830.1 187 FLAAWFVMALGSLAKGLHAVLYP-LLSsglsVLFFPkLRKrWLNL-FWWPGIVLFFLMFVPW 246
                 ***********************.555788777777744414443.335599999****997 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.037
       PMT_2  77 plvllwalalylllraleknklkywllagvlfGlgfls 114
                  l+  w+l+++l++++   +   y++++   + +++l 
  CCG92830.1 319 SLLISWILTTFLSVTFSSLQD--YYAMSCWGALIMILA 354
                 455566666666666655554..333333333334444 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.019
       PMT_2 103 lagvlfGlgflsKytaallliaall.yllis...arrilkekkpylalllalllfsp 155
                 ++ ++fG++f +  + + ll  a + +l+         lk+ +++++++la+ ++ p
  CCG92830.1 411 FLSAIFGFSFSTWKNFVPLLYRASFsFLIGGiiaYWLFLKKERFLAGIFLAFTMIYP 467
                 556778888888777777777777766666674333356666666699999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 4043.95
//
Query:       CCG92831.1  [L=45]
Description: hypothetical protein MFUM_810026 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.3   0.9       0.14   12.2   0.9    1.1  1  DUF4898   Domain of unknown function (DUF4898)


Domain annotation for each model (and alignments):
>> DUF4898  Domain of unknown function (DUF4898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.9   7.6e-06      0.14      14      34 ..       3      23 ..       1      26 [. 0.93

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.6e-06
     DUF4898 14 kfvkkislkiIsdyekffnfi 34
                +f+kk ++k++s  ek+fn+i
  CCG92831.1  3 NFFKKCNVKLVSKREKYFNLI 23
                688****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 349.04
//
Query:       CCG92832.1  [L=347]
Description: Multidrug resistance efflux pump [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-19   69.6   0.1    2.9e-13   49.4   0.1    2.4  2  Biotin_lipoyl_2  Biotin-lipoyl like
    2.1e-18   66.3   0.2    5.4e-18   65.0   0.2    1.5  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    5.7e-17   62.4   0.2    9.2e-16   58.5   0.0    2.3  2  HlyD_3           HlyD family secretion protein
    6.9e-08   32.3   0.0    1.2e-07   31.5   0.0    1.4  1  HlyD             HlyD membrane-fusion protein of T1SS
     0.0014   18.1   0.0     0.0025   17.3   0.0    1.3  1  DUF3100          Protein of unknown function (DUF3100)
      0.002   17.9   0.0        0.2   11.5   0.0    2.5  2  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
       0.06   12.7   0.2       0.06   12.7   0.2    1.7  2  Polysacc_synt    Polysaccharide biosynthesis protein
      0.067   13.0   0.1         16    5.2   0.0    3.5  4  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
       0.45   10.7   5.8         19    5.5   4.6    2.5  2  ATPase_gene1     Putative F0F1-ATPase subunit Ca2+/Mg2+ trans
       0.48   10.2   1.8         19    5.0   0.0    3.1  3  NADH_oxidored    MNLL subunit
       0.78    9.7   5.5        2.5    8.0   0.7    2.2  2  ABC2_membrane_4  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.1   1.8e-16   2.9e-13       4      48 ..      90     134 ..      87     136 .. 0.92
   2 !   17.5   0.0   1.7e-06    0.0027       5      38 ..     185     218 ..     182     223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 1.8e-16
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaq 48 
                       Ia++v+G V+  ++ d++ Vk+G++L+e+D+r++q ++a a+a+
       CCG92832.1  90 RIAPKVAGHVVGYYIDDNMDVKKGQLLIEIDPRDYQSRVAIAQAN 134
                      7***********************************888777775 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.7e-06
  Biotin_lipoyl_2   5 IaapvsGrVaqlnVkdGqrVkaGdvLaelDsral 38 
                      I ap +Gr++   V+ Gq+V+ G++L+ + +++l
       CCG92832.1 185 IYAPEDGRITMRSVEKGQYVEVGQTLFDIVPPDL 218
                      67888**********************9988776 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.2   3.3e-21   5.4e-18      19     185 ..      88     258 ..      85     261 .. 0.78

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 3.3e-21
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXX...XXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  19 larvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalkakkklkkke.......lleaarerLrl...lgvseeqiaelektgkvqk 107
                 + r++++v+G v   y++     VkkGq L+e++  +  + + +  +a k+  ++   e       l ++a ++L++   + v+ ++ a l+  +    
  CCG92832.1  88 IIRIAPKVAGHVVGYYID-DNMDVKKGQLLIEIDPRDYQS-RVAIAQANKEWAET---EwkrmkeiLRSSAVSQLQVdaaWAVKLSTEAFLKFYELQLG 181
                 6799**************.8899**********9777433.22333333322222...11123344777777777643336666666556666666667 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 108 tvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiy 185
                 ++ ++ap +G +t ++v +Gqyv+ g+tlf i    ++Wv+a+  e+q+  +++gq+++++++a+p ++++G+vd i+
  CCG92832.1 182 YTRIYAPEDGRITMRSVEKGQYVEVGQTLFDIVPP-DLWVVANYKETQITFMRPGQAAKIRIDAYPHHRYKGHVDSIQ 258
                 889*****************************985.69*************************************996 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.34   5.6e+02       6      46 ..      95     134 ..      90     141 .. 0.78
   2 !   58.5   0.0   5.6e-19   9.2e-16       2      91 ..     185     282 ..     184     303 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.34
      HlyD_3   6 vdGvvvelnveegevvqagdelleiippdtllveakvpaad 46 
                 v+G+vv   +  +  v +g+ l ei  p++++ ++++++a+
  CCG92832.1  95 VAGHVVGYYIDDNMDVKKGQLLIEID-PRDYQSRVAIAQAN 134
                 778888888866666999******98.58888888888876 PP

  == domain 2  score: 58.5 bits;  conditional E-value: 5.6e-19
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvd..........aktgaykve 90 
                 ++Ap dG+++  +ve+g++v+ g++l+ i+p  +l+v a   ++++ +++ +gq++++++d ++ +++kg +++i + ++          a+++++kv 
  CCG92832.1 185 IYAPEDGRITMRSVEKGQYVEVGQTLFDIVP-PDLWVVANYKETQITFMR-PGQAAKIRIDAYPHHRYKGHVDSIQRGSGaqfsllppenATGNYVKVV 281
                 89****************************7.679**************7.************************995542233333322344455544 PP

      HlyD_3  91 v 91 
                  
  CCG92832.1 282 Q 282
                 4 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   7.2e-11   1.2e-07      12      59 ..     128     291 ..      53     302 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 7.2e-11
                 E.................................................................................................E CS
                 x.................................................................................................x RF
        HlyD  12 a.................................................................................................e 13 
                                                                                                                   e
  CCG92832.1 128 VaiaqankewaetewkrmkeilrssavsqlqvdaawavklsteaflkfyelqlgytriyapedgritmrsvekgqyvevgqtlfdivppdlwvvanykE 226
                 05555555555555556666666666666666666666667777778888888888888888888888888888888888888888888888888899* PP

                 EEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSB......................EEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxx RF
        HlyD  14 tdldqvrvgqpvevrfdAfpqtktgkftgvVvgispd......................rvpvrvvve 59 
                 t++ ++r+gq++++r dA+p+    ++ g V++i+++                      rvpv++  +
  CCG92832.1 227 TQITFMRPGQAAKIRIDAYPHH---RYKGHVDSIQRGsgaqfsllppenatgnyvkvvqRVPVKILFD 291
                 **********************...9*******************************99999999766 PP

>> DUF3100  Protein of unknown function (DUF3100)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.5e-06    0.0025     104     157 ..      12      63 ..      11      79 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.5e-06
     DUF3100 104 glkreaiGatfsiaRepnlaliaekygldspegrGvlavYivGtvfGtlfisll 157
                 ++kreaiG+++s + ep+l+ +++  g +++e++G  a  i   ++G +f  ++
  CCG92832.1  12 RIKREAIGSSSSCEQEPSLTTVSQ--GSKTEEQKGLRAFLIKSILYGLIFSLIF 63 
                 68********************97..9********9888888888887775544 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.035        56      15      36 ..      97     119 ..      89     120 .. 0.53
   2 !   11.5   0.0   0.00013       0.2      44      73 .]     184     213 ..     182     213 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.035
                    ..ECSESSSTTCEE-TTSEEEEE CS
  Biotin_lipoyl  15 g.vvevlvkvGdkVkagqvlaev 36 
                    g vv +++ +   Vk+gq l+e+
     CCG92832.1  97 GhVVGYYIDDNMDVKKGQLLIEI 119
                    33444555555555666655555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00013
                    EEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtvevgdllaki 73 
                     i ap++G+++   v++G+ vevg+ l+ i
     CCG92832.1 184 RIYAPEDGRITMRSVEKGQYVEVGQTLFDI 213
                    688************************987 PP

>> Polysacc_synt  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   3.7e-05      0.06      65     127 ..      37     102 ..      29     105 .. 0.76
   2 ?   -1.7   0.4      0.93   1.5e+03      41      60 ..     318     336 ..     306     343 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.7e-05
  Polysacc_synt  65 akyrekkelvslillnvllvllvlvllfllllliaa...flglpelavlylilalmll.llvgvasf 127
                    +k++e ++  + +l++++l  l+++l+f+l++l+++    +  +++a++   ++ + + ++ +v+ +
     CCG92832.1  37 SKTEE-QKGLRAFLIKSILYGLIFSLIFFLAYLLFEyfsSYETTDDAFIAGHIIRIAPkVAGHVVGY 102
                    55565.5788999***********************8888888888888765555555566666555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.93
  Polysacc_synt  41 alaivtllviltdlGlnaal 60 
                     + + ++  ilt++G+++ l
     CCG92832.1 318 SF-FWSIVLILTGFGIGVVL 336
                    33.33444555555555443 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0      0.01        16      81     107 ..      97     123 ..      79     131 .. 0.85
   2 ?   -0.0   0.0      0.43     7e+02      39      51 ..     184     196 ..     174     209 .. 0.76
   3 ?    1.5   0.0      0.15   2.4e+02      86     103 ..     196     213 ..     189     233 .. 0.79
   4 ?    0.7   0.0      0.25   4.1e+02      19      37 ..     292     310 ..     283     327 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.01
                 TTTEEES----SEE-SEEEEEEE-HHH CS
  PTS_EIIA_1  81 gegFellvkegdkVkagdklvevdlea 107
                 g++   ++ ++  Vk+g++l+e+d+  
  CCG92832.1  97 GHVVGYYIDDNMDVKKGQLLIEIDPRD 123
                 666667888999************875 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.43
                 EEEES--EEEEE- CS
  PTS_EIIA_1  39 kvvapvdGkvekv 51 
                 +++ap dG++++ 
  CCG92832.1 184 RIYAPEDGRITMR 196
                 6888888888874 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.15
                 ES----SEE-SEEEEEEE CS
  PTS_EIIA_1  86 llvkegdkVkagdklvev 103
                   v++g+ V+ g++l+++
  CCG92832.1 196 RSVEKGQYVEVGQTLFDI 213
                 5799**********9876 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.25
                 SHHHHT-TTSEEEEEEE-S CS
  PTS_EIIA_1  19 DevfaekmlGdGvaiepse 37 
                 ++  +++++G G+ + p+ 
  CCG92832.1 292 EPLASDETVGPGFSVVPTV 310
                 4667899**********73 PP

>> ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.042        68      13      29 ..      92     108 ..      87     117 .. 0.84
   2 ?    5.5   4.6     0.012        19      28      52 ..     314     338 ..     312     340 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.042
  ATPase_gene1  13 apillggllGywLDkkf 29 
                   ap ++g ++Gy++D  +
    CCG92832.1  92 APKVAGHVVGYYIDDNM 108
                   77789*********876 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.012
  ATPase_gene1  28 kfgtspwfliiglllGlaaGfynvy 52 
                   kf+ s ++ i+++l G+++G+ +++
    CCG92832.1 314 KFHVSFFWSIVLILTGFGIGVVLAF 338
                   89999***************98875 PP

>> NADH_oxidored  MNLL subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.3   4.9e+02      33      46 ..      42      56 ..      37      58 .. 0.77
   2 ?    5.0   0.0     0.012        19      20      34 ..      97     111 ..      84     114 .. 0.80
   3 ?    1.2   0.5      0.18     3e+02      11      27 ..     320     336 ..     315     343 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.3
                   HH.HGGGTTTSSSS- CS
  NADH_oxidored 33 ek.ltaFrnKSaLyk 46
                   +k l aF  KS+Ly+
     CCG92832.1 42 QKgLRAFLIKSILYG 56
                   33499*********6 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.012
                    HHHHHHHHHHHHHHH CS
  NADH_oxidored  20 GFvvGwyLDkkedek 34 
                    G vvG+y+D + d k
     CCG92832.1  97 GHVVGYYIDDNMDVK 111
                    99*******988755 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.18
                    HCCCCHHHHHHHHHHHH CS
  NADH_oxidored  11 hwvhvlvPlGFvvGwyL 27 
                     w  vl+  GF++G+ L
     CCG92832.1 320 FWSIVLILTGFGIGVVL 336
                    588899989*****866 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.4     0.029        48     103     130 ..      53      80 ..      45      99 .. 0.72
   2 ?    8.0   0.7    0.0015       2.5      96     126 ..     312     342 ..     307     346 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.029
  ABC2_membrane_4 103 lllsvllmlvtflitvlfallsgfvgfs 130
                      +l+ ++++l++fl+ +lf+ +s +  ++
       CCG92832.1  53 ILYGLIFSLIFFLAYLLFEYFSSYETTD 80 
                      4667778888888888887777766555 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0015
  ABC2_membrane_4  96 laKlivllllsvllmlvtflitvlfallsgf 126
                      ++K+ v +++s++l+l+ f i v++a ++  
       CCG92832.1 312 VGKFHVSFFWSIVLILTGFGIGVVLAFILKN 342
                      79********************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2363.02
//
Query:       CCG92833.1  [L=203]
Description: Transcriptional regulator, TetR/AcrR family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-17   61.0   0.2    1.1e-16   60.3   0.2    1.4  1  TetR_N    Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.021   14.8   0.0    1.3  1  TetR_C_7  AefR-like transcriptional repressor, C-terminal dom
      0.046   13.8   0.2        0.1   12.7   0.1    1.6  1  OSCP      ATP synthase delta (OSCP) subunit
       0.34   11.1   3.2       0.46   10.6   1.0    2.4  2  TetR_C_8  Transcriptional regulator C-terminal region


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.2   2.5e-20   1.1e-16       1      47 []      14      60 ..      14      60 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 2.5e-20
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                Il aA +lfa++G+++tt+r IA+ A+v+++++Yry+p+K +L++a+
  CCG92833.1 14 ILNAAKKLFAQKGFAGTTTRNIAQYANVNEALIYRYYPTKKDLYLAI 60
                9*******************************************996 PP

>> TetR_C_7  AefR-like transcriptional repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   4.7e-06     0.021      20     114 ..     104     196 ..      87     198 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.7e-06
                 HHHHHHHHHHHHT-HHHHCCHHHT.T----HHHHHHHHHHHHTTSB-SS-HHHHHHHHHHHHHHHHTHHHHHH------HHHHHHHHHHHHHHHH CS
    TetR_C_7  20 lalaRlviaeaerfPelarafyeagpgrveealaayLeaavaaGrLridDpelAAeqflgllkgelfwprlfgveeppseeeiervvesaVdmFl 114
                  ++ Rl++  a    el ++f e    +++++l++y+  ++++   ++ +p l    f+g ++++l++ +lf +e+ p+ +e  +v+++ +++Fl
  CCG92833.1 104 SDFLRLLYFSALEHHELSKMFCECFVVELRKKLENYVSMLMDRNIFKALNPYLVSVAFIGIISHYLVANTLFELET-PQISE-TEVIDNFIEIFL 196
                 467788888888889***********************************************************55.44444.348999999998 PP

>> OSCP  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   2.3e-05       0.1      25      86 ..      95     153 ..      81     158 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
        OSCP  25 elealeavlaedkklaellsnpavsaeekkdlleelfkeklseavknflkllaenkRlalLp 86 
                 +l    + ++ed+++ +ll+  a+++ e+++++ e f  +l ++++n +++l++++ ++ L+
  CCG92833.1  95 QL---FSSVKEDSDFLRLLYFSALEHHELSKMFCECFVVELRKKLENYVSMLMDRNIFKALN 153
                 33...3779**************************99999***************9988875 PP

>> TetR_C_8  Transcriptional regulator C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.53   2.4e+03      11      29 ..      47      65 ..      38      75 .. 0.74
   2 ?   10.6   1.0    0.0001      0.46       4      82 ..      90     169 ..      88     174 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.53
                HHHHHHTHHHHHHHHHH-. CS
    TetR_C_8 11 feyikenkdfyknllssng 29
                 +y   +kd+y ++++s+ 
  CCG92833.1 47 YRYYPTKKDLYLAIIRSKI 65
                5566677888888888764 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHHHHTHHHHHHHHHH-..THHHHHHHHHHHHHHHHHHHHHH-TT--S-HHHHHHHHHHH.HHHHHHHHHHHH CS
    TetR_C_8   4 qegllklfeyikenkdfyknllssn.gresfekylkelikelilkvieelsegkelseedkefiadfy.sygfvgvildWl 82 
                 +++ ++lf  +ke++df++ l+ s  ++ ++ k + e +   ++k++e+   ++ ++ +  + +  ++ s +f+g+i ++l
  CCG92833.1  90 KQIATQLFSSVKEDSDFLRLLYFSAlEHHELSKMFCECFVVELRKKLENYV-SMLMDRNIFKALNPYLvSVAFIGIISHYL 169
                 68999****************976514444555555555444444444433.3334444444454455266******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.50
# Mc/sec: 1231.68
//
Query:       CCG92834.1  [L=184]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-33  114.3   5.0    5.1e-33  114.0   5.0    1.0  1  DUF2062   Uncharacterized protein conserved in bacteria (DUF2
     0.0099   16.1   2.1        0.5   10.7   0.1    2.2  2  DUF4064   Protein of unknown function (DUF4064)


Domain annotation for each model (and alignments):
>> DUF2062  Uncharacterized protein conserved in bacteria (DUF2062)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   5.0   5.7e-37   5.1e-33       6     145 ..      28     173 ..      24     176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 5.7e-37
     DUF2062   6 ylllrllrlhlsprsvarGvaiGvfigflPifglqmllaallalllrvnlpaavagtwi.snPltlpp.iyylayklGalllgeeaeal..slseleel 100
                 +    l++l+ s +s+a G+aiGvf gf+P++g++++la++ a+l+r++++aa++g+      l ++p +++l+yk+G ++lg++++++   ls+l++l
  CCG92834.1  28 KSHTILRKLPVSAHSIAFGFAIGVFYGFTPFWGFKTILAIVSAWLVRASKVAAAVGVAAhDIALPFVPgLMWLEYKIGLIVLGQNSHQFnkTLSKLQHL 126
                 555567899***********************************************9995555555553677*******************55666666 PP

     DUF2062 101 gl..ewlleslleiglplllGslilglilallgYflvlllwrlyrrr 145
                 +l     +++++++g+p+++Gsli+gl+la+++Y+lv + +++y++ 
  CCG92834.1 127 ELkqLISWQEIYNLGWPMFIGSLIIGLPLAAISYILVFKSIKKYQEI 173
                 665467899***********************************985 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   5.6e-05       0.5      34      90 ..      25      81 ..      11      87 .. 0.80
   2 !    5.2   0.2    0.0028        25      44      85 ..     122     166 ..      95     170 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.6e-05
     DUF4064 34 efsqelteeqalsgedasavleflstllivlgvialiaivlgivgalllkknkkvsG 90
                 f+++ t+  +l+++++s + +f  ++++ ++ ++ + ++l iv+a+l++ +k +++
  CCG92834.1 25 HFKKSHTILRKLPVSAHSIAFGFAIGVFYGFTPFWGFKTILAIVSAWLVRASKVAAA 81
                455555555888999999999*****************************6655433 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0028
     DUF4064  44 alsgedasavl..eflstlli.vlgvialiaivlgivgalllkkn 85 
                 +l++ + ++      + +l++ +++  ++i + l  ++ +l+ k+
  CCG92834.1 122 KLQHLELKQLIswQEIYNLGWpMFIGSLIIGLPLAAISYILVFKS 166
                 333333333332356789999677777888888999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1455.93
//
Query:       CCG92835.1  [L=599]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-68  231.0   5.4    1.2e-26   93.9   2.9    5.0  5  DUF4340       Domain of unknown function (DUF4340)
  ------ inclusion threshold ------
      0.033   13.7   0.2      0.054   13.0   0.2    1.3  1  FAP206        Domain of unknown function
      0.037   14.4   2.6      0.079   13.3   0.2    2.4  2  RNA_pol_Rpb4  RNA polymerase Rpb4


Domain annotation for each model (and alignments):
>> DUF4340  Domain of unknown function (DUF4340)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0015       8.9     104     138 ..      38      71 ..      29      79 .. 0.89
   2 !   67.0   0.0   3.5e-22   2.1e-18       1     120 [.      70     195 ..      70     214 .. 0.90
   3 !   93.9   2.9     2e-30   1.2e-26       1     168 [.     215     384 ..     215     387 .. 0.93
   4 !   65.8   0.1   8.2e-22   4.9e-18       1     169 [.     354     522 ..     354     530 .. 0.90
   5 !   11.9   0.0   2.9e-05      0.17      43      89 ..     530     574 ..     525     582 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0015
     DUF4340 104 dkdllqldsedvtkielvskegrtlelekkedget 138
                 + +l+++++ +++ ++  +++g++++lekke++++
  CCG92835.1  38 ENELFHIEAGEINWLQ-IKSPGESVTLEKKENQWK 71 
                 67899***********.*****************8 PP

  == domain 2  score: 67.0 bits;  conditional E-value: 3.5e-22
     DUF4340   1 Wrltedsnfpadqdkvdslldalaslkadslvsed....aedlakygLddPeatvtv.tdadlatlyvGketpndggsyYvr.legdda.vylvssala 92 
                 W++ ++ +++ad+ ++d++l +l+ l+++++++++     + l+++g+++P++++ + t++++++l+vG++t+   + +Y++   g++  +yl+ss++a
  CCG92835.1  70 WKIISPIHADADERTIDRYLIDLQYLEVRRKIPQNeipsGDILKQWGFSNPSLEIYFkTSKETHSLIVGRKTA-VSELVYAKtSTGSNGpIYLISSSMA 167
                 *****************************87777777779*****************66666***********.679*****77788889********* PP

     DUF4340  93 eslkkklsdwrdkdllqldsedvtkiel 120
                 eslkk+l+d+r + +++++++++ k+ +
  CCG92835.1 168 ESLKKGLDDLRSRVVFHFNQFSIDKCGI 195
                 ***********************99875 PP

  == domain 3  score: 93.9 bits;  conditional E-value: 2e-30
     DUF4340   1 WrltedsnfpadqdkvdslldalaslkadslvsedaedlakygLddPeatvtvtdad...latlyvGketpndggsyYvrlegddavylvssalaeslk 96 
                 W l+++  ++ad +k+++++++l sl +d+++ +d ++l +ygLd+P+ ++ ++ +d   + +l+vG++ p d+ + Y++++ +++v++++ ++ +++ 
  CCG92835.1 215 WELQKPVMARADGSKLEDWFNELHSLHIDKFIADDGSNLNQYGLDSPRYQIWINQSDkkeEEKLLVGNSLPSDTKELYAKMASSNSVFTIQADAVNKIV 313
                 9****************************************************55555569************************************** PP

     DUF4340  97 kklsdwrdkdll.qldsedvtkielvskegrtlelekkedgettsakpegeeldtaklntllsalssLkisaf 168
                 +++sd rdk+++ ++++e+v+ki    +++ +l   kk+++++ s++ e+  ++ +k+n+ ++al +L+++++
  CCG92835.1 314 QNFSDIRDKHVFpTFSEEQVEKIW-FRNKDLKLVYVKKGSDWQ-SEETEKGLANKNKVNEFIEALRNLEAKDI 384
                 ************************.777778888888888877.78889999999**************9986 PP

  == domain 4  score: 65.8 bits;  conditional E-value: 8.2e-22
     DUF4340   1 WrltedsnfpadqdkvdslldalaslkadslvsedaedlakygLddPeatvtv.......tdad.latlyvGketpndggsyYvrlegddavylvssal 91 
                 W+  e ++  a+++kv++ ++al++l+a+  + +++ + + ygL++P+ ++++       td+   ++ly+Gk+     g  Y++ + ++ vy++++++
  CCG92835.1 354 WQSEETEKGLANKNKVNEFIEALRNLEAK-DIKQEQMEVKGYGLENPQEDIEIefnpgltTDKSqRVELYLGKDEN---GLIYAKNSIEPFVYAIKDSF 448
                 555666666799****************9.899999**************999888887744446**********9...9*****999999******** PP

     DUF4340  92 aeslkkklsdwrdkdllqldsedvtkielvskegrtlelekkedgettsakpegeeldtaklntllsalssLkisafv 169
                  ++l+k++ dw d  + qld++++++   v ++++++++++ke +     +   + ld++k+++ l+ l+ Lk+++++
  CCG92835.1 449 IKTLPKDPWDWKDLSIIQLDPQEISQWD-VISGNQSFTVQRKEGKFI---ATGISGLDEEKAKDCLELLAHLKAVRWI 522
                 ****************************.**************9988...556678999***************9987 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 2.9e-05
     DUF4340  43 gLddPeatvtvtdadlatlyvGketpndggsyYvrlegddavylvss 89 
                 +L++P+a++t++ +  ++ ++G ++p + g++Y+ leg++ ++ +++
  CCG92835.1 530 ELSKPQAKITIHAKKNYVVLIGVASP-T-GGRYALLEGTPIAFELED 574
                 578********77777**********.5.8********997777665 PP

>> FAP206  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   9.1e-06     0.054      66     123 ..     283     342 ..     280     411 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.1e-06
      FAP206  66 illedveksaeeveellkrfeaeleklketvksktavpkeqVyPkF..ialaelWselqd 123
                 +l +d +++  ++ ++++ f  + ++++++v++ + +  ++V+P F  +++ ++W+  +d
  CCG92835.1 283 SLPSDTKELYAKMASSNSVFTIQADAVNKIVQNFSDIRDKHVFPTFseEQVEKIWFRNKD 342
                 678899999999**********************************77789999987655 PP

>> RNA_pol_Rpb4  RNA polymerase Rpb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   1.3e-05     0.079      78     115 ..     273     336 ..     267     338 .. 0.85
   2 ?    0.0   0.2      0.17     1e+03      56      76 ..     360     380 ..     338     392 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
                   THHHHHHHHHCSTSSHHHHHHHSTTGTT..........................TSTSHHHHHH CS
  RNA_pol_Rpb4  78 tkaEklqlvnlkPesavelktlieelee..........................rfedeqleei 115
                   ++ Ekl ++n +P+++ el++ +++ ++                           f++eq+e+i
    CCG92835.1 273 KEEEKLLVGNSLPSDTKELYAKMASSNSvftiqadavnkivqnfsdirdkhvfpTFSEEQVEKI 336
                   578*************************888888888888888888888888888888888877 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.17
                   HHTTSSHHHHHHHHHHHTTST CS
  RNA_pol_Rpb4  56 fsrlkneekfnelvellksfe 76 
                    + l n+ k+ne++e l++ e
    CCG92835.1 360 EKGLANKNKVNEFIEALRNLE 380
                   334445555777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4133.08
//
Query:       CCG92836.1  [L=492]
Description: ABC-type transport system involved in gliding motility, auxiliary component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-41  141.6   0.2    4.2e-41  141.2   0.2    1.2  1  ABC_transp_aux  ABC-type uncharacterized transport system
  ------ inclusion threshold ------
      0.083   12.6   0.0       0.26   11.0   0.0    1.8  2  Amidase02_C     N-acetylmuramoyl-l-alanine amidase
        4.1    7.7   5.2        1.2    9.5   0.9    2.3  2  Sigma_reg_N     Sigma factor regulator N-terminal


Domain annotation for each model (and alignments):
>> ABC_transp_aux  ABC-type uncharacterized transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   0.2     7e-45   4.2e-41       1     267 []      42     292 ..      42     292 .. 0.86

  Alignments for each domain:
  == domain 1  score: 141.2 bits;  conditional E-value: 7e-45
  ABC_transp_aux   1 RlDlTadklYtLsdatkellknleepvtikvylsenlalppelkalekevkdlLeeyaaysggkisvefidpspneeeeeeaeay...gitpvqi 92 
                     R D+++ + YtLs++t ++lk+l epv+i v l++++        l+++++ lL+ey+ y+g+ki +e idp  n e +e+ ++    ++++  i
      CCG92836.1  42 RKDFSKGGMYTLSSKTINVLKSLPEPVKIIVCLTNSK--------LQSDIDNLLKEYKYYGGNKIIIEHIDPALNLERAEALAKRlkfDLQENVI 128
                     77**********************************4........6***************************8884333333314566666444 PP

  ABC_transp_aux  93 sveekdelkt.krvymglvieygdkeetipllkntsesnlEyeltsairkltdkkkpkvgfltghgelsls.s.p...seadfleelee.nYnve 180
                       e k+   + k v     +ey +++ +  +  +++ ++ E+++t+ai ++++ k+ kv+fltghge++++ + +   +   + +++++ n++  
      CCG92836.1 129 IFEYKN---FhKFVNDNQLVEYDNSVAMFGQSPSIKAFKGEQQFTAAILSVVEGKPSKVYFLTGHGERNIDnYnQpggY-GIIATQIRKeNMEPL 219
                     444322...3233333557789999999999999************************************976545532.3455*********** PP

  ABC_transp_aux 181 evdldsedilpedidvlviakptkdlseeelykldqflmnGgkllvfldpvaeeqdslsepsaaprtsnLedllaeyGvrinpglVl 267
                     +++l +++ +ped +v+via+p+++ls++el+++  +l++ gkl+v+    +              +s+Le+ll++yG+ ++++ V+
      CCG92836.1 220 NLNLLESGAVPEDAAVVVIAGPKNPLSPSELQAITHYLDSKGKLIVLEGSNS--------------NSGLEPLLSKYGIIFQNDKVV 292
                     *********************************************9988888..............789**************9985 PP

>> Amidase02_C  N-acetylmuramoyl-l-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.4e-05      0.26      21      39 ..     243     261 ..     242     263 .. 0.92
   2 ?   -3.3   0.0       1.3   7.9e+03      10      19 ..     423     432 ..     423     432 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.4e-05
  Amidase02_C  21 eptsdteLdkitawLDrkg 39 
                  +p+s  eL++it +LD kg
   CCG92836.1 243 NPLSPSELQAITHYLDSKG 261
                  789999***********97 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.3
  Amidase02_C  10 lqpdGltYfi 19 
                  ++pdG+ +fi
   CCG92836.1 423 IKPDGVDFFI 432
                  689***9987 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.9    0.0002       1.2       8      38 ..      11      44 ..      10      64 .. 0.80
   2 ?   -2.0   0.2      0.76   4.5e+03      11      30 ..     466     485 ..     462     489 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0002
  Sigma_reg_N  8 krksilrivlislivlllifvilvvtllyl...a 38
                 ++++++ ++l++l+++ +++++ +++++y+   +
   CCG92836.1 11 RFQLRINNILTILLMFAIVWIVNYLGYKYYyrkD 44
                 7999*************************95440 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.76
  Sigma_reg_N  11 silrivlislivlllifvil 30 
                  +  +i li++ +++l++ + 
   CCG92836.1 466 TVAMICLITIPFAFLVLGVG 485
                  55567777777777776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3504.86
//
Query:       CCG92837.1  [L=249]
Description: ABC-type transport system involved in gliding motility, permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-13   49.6  20.3    3.3e-13   49.6  20.3    1.3  1  ABC2_membrane_2  ABC-2 family transporter protein
    2.6e-09   37.3  24.9    3.9e-09   36.7  24.9    1.3  1  ABC2_membrane_4  ABC-2 family transporter protein
    5.5e-09   35.6  34.3    5.5e-09   35.6  34.3    1.8  2  ABC2_membrane_3  ABC-2 family transporter protein
    2.7e-07   30.3  22.0    2.7e-07   30.3  22.0    2.1  2  ABC2_membrane_5  ABC-2 family transporter protein
    1.3e-05   24.7  34.3    1.3e-05   24.7  34.3    1.9  2  ABC2_membrane    ABC-2 type transporter
  ------ inclusion threshold ------
       0.26   11.4   4.8      0.091   12.8   0.9    2.3  2  GPR_Gpa2_C       G protein-coupled glucose receptor regulatin


Domain annotation for each model (and alignments):
>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6  20.3   1.1e-16   3.3e-13      89     256 ..      70     225 ..      38     238 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1.1e-16
  ABC2_membrane_2  89 aalfgadaiagEkergTlkllLskPvsRdeillgKfigglaigla.iavallatvllalaiilalgivlaledllllvvasvlllllvvflalg 181
                        ++++ ++a+E+  gT++  L+ Pv  +e++l+Kf+g+++   + ++ + +a +l+ l i+ + +  +++++++l +++ +l+++  +f+++g
       CCG92837.1  70 VPVLTMRSFAEEYKLGTIEMILTAPVREWELVLSKFLGSVCF--FsVLWMPMALYLAVLRIVYGHSLGMSAGMIVLPFLMLLLIGM--FFISIG 159
                      568999***********************************9..889999999999999999999999999999988888888888..88**** PP

  ABC2_membrane_2 182 lllSsvarssreaaalalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdln 256
                      l++Ss+++++  aa l+++l+++ + l+ ++ +g++      ++       +s+ls  + ++t  + i+ + ++ 
       CCG92837.1 160 LFVSSLTKNQIIAAILSFALIFLIFSLSFLIYLGIGGQTR--EM-------ISYLSFLDQMDTFSRGIFDSRPVV 225
                      ****************999999999999888888777665..44.......788888888888888887777655 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7  24.9   1.3e-12   3.9e-09      11     177 ..      16     181 ..       6     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.3e-12
  ABC2_membrane_4  11 rskivwllvlaallvpl.lallyfnllgktgldpaefyslsvfgftlllllplilgiiasylifrEeqndtlknLltiPvsrtklllaKli.vl 102
                       s + ++l+++  l+     ++  n+l+  ++++ ++ +  ++ f +++ll + + +++ +++ +E++ +t+  +lt Pv + +l+l+K++  +
       CCG92837.1  16 VSPVAYILLFSCSLINGaSFVFWLNYLSINNIKEFTLLQACMNAFFFWFLLLVQVPVLTMRSFAEEYKLGTIEMILTAPVREWELVLSKFLgSV 109
                      566667777755555441556666899999998777777778889999999999999********************************98457 PP

  ABC2_membrane_4 103 lllsvllmlvtflitvlfallsgfvgfsvklvlellkkclelgllvffavlpiialvllkksyvlpliltlvyti 177
                      +++svl m +++ ++vl  +  ++ g+s+++++  + ++l++g+  f +++  +++++l+k+++++ il++ +++
       CCG92837.1 110 CFFSVLWMPMALYLAVLRIVYGHSLGMSAGMIVLPFLMLLLIGM--F-FISIGLFVSSLTKNQIIAAILSFALIF 181
                      88999999999999999999999999998887666665554444..4.44545899**********999876665 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.4      0.27   8.1e+02     161     187 ..      13      43 ..       4      55 .. 0.55
   2 !   35.6  34.3   1.8e-12   5.5e-09     164     289 ..      59     192 ..      39     237 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.27
  ABC2_membrane_3 161 sflvg....liliilifitasfiavsiveEk 187
                      s++v+    ++l+ +++i ++++++++    
       CCG92837.1  13 SYFVSpvayILLFSCSLINGASFVFWLNYLS 43 
                      4444433335555556666665665555444 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 1.8e-12
  ABC2_membrane_3 164 vgliliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllill.l.....afgl..gipfgnlglllllfllfg 249
                      ++++ ++l+  +++ +++s++eE + +++e++l+++v+ ++++lsk+lg++  + + ++ + l l     ++g   g++ g ++l +l++ll g
       CCG92837.1  59 AFFFWFLLLVQVPVLTMRSFAEEYKLGTIEMILTAPVREWELVLSKFLGSVCFFSVLWMPMALyLavlriVYGHslGMSAGMIVLPFLMLLLIG 152
                      448888889999999************************************999999876655323124355544444444444556******* PP

  ABC2_membrane_3 250 layialgyllsslfknsetaqilifivilllsgffgglfp 289
                      + +i++g+++ssl+kn+  a il f++i+l++ +++++++
       CCG92837.1 153 MFFISIGLFVSSLTKNQIIAAILSFALIFLIFSLSFLIYL 192
                      *******************999999999977777777775 PP

>> ABC2_membrane_5  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.4      0.25   7.6e+02      14      41 ..      11      38 ..       4      48 .. 0.61
   2 !   30.3  22.0   9.1e-11   2.7e-07      36     168 ..      58     190 ..      50     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.25
  ABC2_membrane_5 14 ikillivllllaiiiliflndsvllifs 41
                     +k+++++ +++++++++ l ++ +++f+
       CCG92837.1 11 MKSYFVSPVAYILLFSCSLINGASFVFW 38
                     5666666666666666666555555554 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 9.1e-11
  ABC2_membrane_5  36 vllifsilslvisiililttlsyDekskwnkylltLPvtrkeiVksKYlfvlililiailitlllliiavlikgnvtisevllsiliglviali 129
                       +++f++l lv + +l + +++ + k ++  ++lt Pv+ +e+V sK+l++++++ + ++ ++l+l++  +++g     ++ + +l +l++ li
       CCG92837.1  58 NAFFFWFLLLVQVPVLTMRSFAEEYKLGTIEMILTAPVREWELVLSKFLGSVCFFSVLWMPMALYLAVLRIVYGHSLGMSAGMIVLPFLMLLLI 151
                      468999999999999999*********************************************************5444444444444444444 PP

  ABC2_membrane_5 130 flaivlPlyfkfgvekgrivliiiifgiifllvaifsls 168
                       + ++   +f  +  k +i++ i++f++ifl+++++ l 
       CCG92837.1 152 GMFFISIGLFVSSLTKNQIIAAILSFALIFLIFSLSFLI 190
                      444444455566666677777777777777666654433 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7  34.3   4.3e-09   1.3e-05       3     180 ..       3     191 ..       1     211 [. 0.72
   2 ?    0.6   0.3      0.11   3.2e+02      46      69 ..     215     238 ..     199     245 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 4.3e-09
  ABC2_membrane   3 ikallkreflqrwrdpslgllwrliqplll..alvfgtvfgnlgnsedglnr......pgllffsvlflafsaltsvapvferergvlerelvspl 90 
                    +++l++re+++++ +p+ + ++ +   l+   ++vf++ + +++n +++         + ++ f++l  +   lt  ++  e++ g++e  l++p+
     CCG92837.1   3 LLTLFQREMKSYFVSPVAY-ILLFSCSLINgaSFVFWLNYLSINNIKEFT-LlqacmnAFFFWFLLLVQV-PVLTMRSFAEEYKLGTIEMILTAPV 95 
                    689*************988.544444444411456666666544333322.2467765777777777777.6666666****************** PP

  ABC2_membrane  91 yslsayvlakvlvelpvsllqalifll.ivyf..lvgldls..rf..flflllllltalaasslgllisalapsfedasqlaslvllpllllsGff 179
                     + ++ vl+k+l+++++  ++++ + l ++++  + g  l   ++  +l +l+lll++++++s+gl++s+l++++  a++l+++++++++ ls  +
     CCG92837.1  96 -REWELVLSKFLGSVCFFSVLWMPMALyLAVLriVYGHSLGmsAGmiVLPFLMLLLIGMFFISIGLFVSSLTKNQIIAAILSFALIFLIFSLSFLI 190
                    .**********9998888777766555333331133333335444678889999*********************************999998555 PP

  ABC2_membrane 180 i 180
                    +
     CCG92837.1 191 Y 191
                    4 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.11
  ABC2_membrane  46 sedgl.nrpgllffsvlflafsalt 69 
                    s +++ +rp +l +s++f+++++ t
     CCG92837.1 215 SRGIFdSRPVVLLGSATFFFLFL-T 238
                    55666677999999999999544.3 PP

>> GPR_Gpa2_C  G protein-coupled glucose receptor regulating Gpa2 C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.9     3e-05     0.091       7      33 ..       7      33 ..       4      77 .. 0.78
   2 ?   -1.2   0.2      0.76   2.3e+03      44      64 ..     144     164 ..     114     184 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3e-05
  GPR_Gpa2_C  7 ierqlrsifiYPlaYiilwlfPfvahv 33
                 +r+++s f+ P+aYi+l+   ++  +
  CCG92837.1  7 FQREMKSYFVSPVAYILLFSCSLINGA 33
                599***************988888665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.76
  GPR_Gpa2_C  44 pviwllvvaavvqplnglVDt 64 
                 p   ll++ ++++ +  +V +
  CCG92837.1 144 PFLMLLLIGMFFISIGLFVSS 164
                 556666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1146  (0.0639188); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 1702.97
//
Query:       CCG92838.1  [L=312]
Description: ABC-type transport system involved in gliding motility, ATPase component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-28   98.4   0.0      9e-28   97.5   0.0    1.4  1  ABC_tran   ABC transporter
    3.7e-11   43.4   0.9    5.4e-06   26.4   0.4    2.1  2  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
     0.0013   19.4   0.0     0.0047   17.6   0.0    2.0  1  DUF4162    Domain of unknown function (DUF4162)
     0.0074   16.8   0.2      0.015   15.8   0.2    1.5  1  AAA_23     AAA domain
  ------ inclusion threshold ------
      0.017   15.0   0.1      0.052   13.5   0.0    1.9  2  Rad17      Rad17 P-loop domain
      0.028   14.1   0.0      0.049   13.3   0.0    1.3  1  SRP54      SRP54-type protein, GTPase domain
      0.028   14.1   0.1        3.3    7.3   0.0    2.1  2  AAA_15     AAA ATPase domain
      0.056   12.9   0.1        6.9    6.0   0.0    2.1  2  SMC_N      RecF/RecN/SMC N terminal domain
      0.088   12.9   0.3       0.72   10.0   0.1    2.3  2  FKBP26_C   FKBP26_C-terminal
        0.1   12.3   0.1         13    5.5   0.0    2.2  2  IstB_IS21  IstB-like ATP binding protein
        0.2   11.3   0.1        0.7    9.6   0.0    1.8  2  AAA_30     AAA domain
       0.21    9.1   0.1       0.28    8.7   0.1    1.1  1  DUF3584    Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0     6e-31     9e-28       1     136 [.      17     160 ..      17     161 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 6e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 l+ +s+++k+ge+v+++G+nGaGK+t +++l+  l pt+G++++ g d+ +++l +++k++g++p++  l  +l+v e                +e+++
  CCG92838.1  17 LQGISFEVKKGEIVGFLGPNGAGKTTTMRILSCYLPPTSGKVEVAGFDVLQKPL-EVKKRVGYMPENVPLYTDLRVNEYlryraklkgirgsMLNERVQ 114
                 689************************************************666.5799***************99999*9999999999988889999 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  +l+   +++++ + +     +LS+G +qrv la al+ +p+ll+lDEpt
  CCG92838.1 115 SVLKLCHIEDVASSMI----GNLSKGYRQRVGLADALVHDPELLILDEPT 160
                 9999999999999999....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.1e-06     0.011       2      23 ..      30      51 ..      29      94 .. 0.77
   2 !   26.4   0.4   3.6e-09   5.4e-06     235     298 ..     131     190 ..      98     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.1e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldlla 23
                 ++ GpNg+GK++ +++l++  
  CCG92838.1 30 VGFLGPNGAGKTTTMRILSCYL 51
                6789**************9874 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 3.6e-09
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                  +lS G ++  +l+ al  ++    ll++DEp  gL+P  +r++ el+++l +    +il++H 
  CCG92838.1 131 GNLSKGYRQRVGLADALVHDP---ELLILDEPTIGLDPNQIRSVRELIRSLGQ-HHTIILSSHI 190
                 567888887789999999999...9***********************99999.9********5 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.1e-06    0.0047      21      81 .]     245     310 ..     224     310 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.1e-06
                 -----..---EEEE-TT.S-EEEEE-...------------.----EEEEEEEE---HHHHHHHHH CS
     DUF4162  21 aeelleepgveeveeeg.gelelkle...deeaanellkal.tsgveirsFeeeePsLndIFiekv 81 
                  e l+e+++ e+vee   g ++l++    +++ +  + + + ++g +ir+++ ++++L+dIF+e++
  CCG92838.1 245 FERLEEVEEAEIVEEYPgGWVILQVWpkpGNDIRDGVYNVIqKNGWKIREMSRIKATLEDIFVELT 310
                 4445555556666666644466666544347788889999966********************975 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2     1e-05     0.015      12      39 ..      19      47 ..       2      51 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1e-05
      AAA_23 12 dqeidF...skgltlItGpNGaGKTTildAi 39
                +  i F   +  ++ + GpNGaGKTT ++ +
  CCG92838.1 19 G--ISFevkKGEIVGFLGPNGAGKTTTMRIL 47
                3..555555557999***********98765 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.5e-05     0.052      33      71 ..      15      53 ..       9     142 .. 0.75
   2 ?   -2.9   0.0       3.6   5.4e+03     114     132 ..     277     295 ..     275     305 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.5e-05
       Rad17 33 ewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgi 71
                ++l+  + e +k +i+   GP G gk+t++++Ls  l +
  CCG92838.1 15 TALQGISFEVKKGEIVGFLGPNGAGKTTTMRILSCYLPP 53
                57788889999999*******************987755 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.6
       Rad17 114 LkdakylklqklGddlrtd 132
                 ++d  y+++qk G ++r  
  CCG92838.1 277 IRDGVYNVIQKNGWKIREM 295
                 5788899999999888765 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.3e-05     0.049       4      39 ..      30      65 ..      28      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.3e-05
                EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEEST CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkvllvaaDt 39
                + ++G++GaGKTtt+  L+ +l     kv ++  D+
  CCG92838.1 30 VGFLGPNGAGKTTTMRILSCYLPPTSGKVEVAGFDV 65
                5589*****************999999999888886 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0022       3.3      21      44 ..      24      48 ..      12      68 .. 0.81
   2 ?    4.8   0.0     0.013        20     323     364 ..     150     189 ..     127     190 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0022
      AAA_15 21 lsee.ltvliGkNnsGKSsileald 44
                +++  +  + G+N++GK++ +++l 
  CCG92838.1 24 VKKGeIVGFLGPNGAGKTTTMRILS 48
                4444578899***********9996 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.013
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 ++ +l+++EP + L p++ +++ +l+++l + +   +i+++H
  CCG92838.1 150 DPELLILDEPTIGLDPNQIRSVRELIRSLGQHHT--IILSSH 189
                 6789*****************************6..***999 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0      0.01        16      26      44 ..      29      47 ..       4      61 .. 0.76
   2 ?    6.0   0.0    0.0047       6.9     161     202 ..     153     194 ..     111     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.01
                EEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAi 44
                +   +GpNG+GK+  +  +
  CCG92838.1 29 IVGFLGPNGAGKTTTMRIL 47
                445689*******887665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0047
                 EEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 161 lyllDeidaaLDeknvkkvaellkeksknaQfivislreeml 202
                 l +lDe    LD ++++ v el+++  ++  +i  s+    +
  CCG92838.1 153 LLILDEPTIGLDPNQIRSVRELIRSLGQHHTIILSSHILSEV 194
                 789************************999888888755444 PP

>> FKBP26_C  FKBP26_C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       0.6     9e+02       4      30 ..       3      29 ..       3      30 .. 0.76
   2 ?   10.0   0.1   0.00048      0.72      47      71 ..     236     260 ..     233     261 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.6
                HHHHHHHHH-TT--..--EEEEETTEE CS
    FKBP26_C  4 kikelIkryiPnidlekfkieiedktv 30
                k+++lIk y     l+ + +e++++++
  CCG92838.1  3 KVENLIKTYSGYTALQGISFEVKKGEI 29
                899******666666688888888765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00048
                 HHHHHHHHHHHH-TTEEEEEEEEEE CS
    FKBP26_C  47 aklrIAkdilkrieevekVkFvdef 71 
                  k ++Ak++++r+eeve+ + v+e+
  CCG92838.1 236 CKPSVAKEAFERLEEVEEAEIVEEY 260
                 5789*******************98 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.015        23      37      62 ..      16      42 ..      10      79 .. 0.86
   2 ?    5.5   0.0    0.0085        13     107     148 ..     149     189 ..     127     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.015
   IstB_IS21 37 eLatlsf.iekkenivllGpsGvGKsh 62
                +L++ sf ++k e + +lGp G+GK+ 
  CCG92838.1 16 ALQGISFeVKKGEIVGFLGPNGAGKTT 42
                6777777577888889*********95 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0085
   IstB_IS21 107 lkvdllilDdlgllpldqaeaellfeviekryerrsiiitsn 148
                   ++llilD+     ld ++ + + e+i +  ++++ii++s 
  CCG92838.1 149 HDPELLILDEPT-IGLDPNQIRSVRELIRSLGQHHTIILSSH 189
                 4579******75.579***********************997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00047       0.7      20      40 ..      29      49 ..      21      64 .. 0.76
   2 ?   -1.4   0.0       1.1   1.7e+03      84     100 ..     146     162 ..     109     187 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00047
      AAA_30 20 vavltGpAGtGKttalkalre 40
                ++   Gp G+GKtt+++ l  
  CCG92838.1 29 IVGFLGPNGAGKTTTMRILSC 49
                67778***********98865 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      AAA_30  84 arlepgtllivDEagmv 100
                 a +++ +lli DE    
  CCG92838.1 146 ALVHDPELLILDEPTIG 162
                 44555588888886553 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00019      0.28       7      37 ..      17      47 ..       6      50 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00019
     DUF3584  7 lkGrvaeldldghtnieGtNaaGKTtLlrLi 37
                l+G   e++  + +   G N+aGKTt++r++
  CCG92838.1 17 LQGISFEVKKGEIVGFLGPNGAGKTTTMRIL 47
                77888888888889999************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 1947.76
//
Query:       CCG92839.1  [L=254]
Description: Chromosome (Plasmid) partitioning ATPase, ParA family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-52  177.7   0.0    4.4e-52  176.6   0.0    1.5  2  AAA_31       AAA domain
    4.7e-27   94.6   0.0    6.1e-27   94.2   0.0    1.2  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
      1e-09   38.2   0.0    4.1e-09   36.3   0.0    1.8  1  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
    1.9e-08   34.1   0.0      7e-07   28.9   0.1    2.1  2  ParA         NUBPL iron-transfer P-loop NTPase
    3.6e-08   33.0   0.4    4.5e-06   26.1   0.1    2.3  2  ArsA_ATPase  Anion-transporting ATPase
    7.8e-08   31.9   0.0    4.2e-05   23.0   0.0    2.1  2  MipZ         ATPase MipZ
    4.3e-06   26.4   0.0    1.9e-05   24.3   0.0    1.8  2  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
    0.00024   20.5   0.4     0.0048   16.2   0.1    2.0  2  VirC1        VirC1 protein
     0.0057   16.0   0.1      0.023   14.0   0.0    1.8  2  DUF1611      Domain of unknown function (DUF1611_C) P-loop do
  ------ inclusion threshold ------
      0.026   14.3   0.1      0.087   12.6   0.1    1.8  2  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-
      0.037   13.0   0.1      0.064   12.2   0.1    1.3  1  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
      0.039   13.6   0.1      0.086   12.5   0.1    1.5  2  SRP54        SRP54-type protein, GTPase domain
       0.13   12.0   0.2        0.8    9.4   0.1    2.1  2  ATP_bind_1   Conserved hypothetical ATP binding protein
        0.2   11.2   0.0       0.35   10.4   0.0    1.3  1  AAA_25       AAA domain


Domain annotation for each model (and alignments):
>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.6   0.0   3.4e-55   4.4e-52       1     170 [.       1     171 [.       1     178 [. 0.94
   2 ?   -2.2   0.0       2.5   3.3e+03      38      63 ..     186     212 ..     180     224 .. 0.45

  Alignments for each domain:
  == domain 1  score: 176.6 bits;  conditional E-value: 3.4e-55
      AAA_31   1 gkvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielve 99 
                 +k I+ianqKGGvGKTTt++nl+a+la++g+ +LlvD+DpQ+nat+g+g++ ++  k+l+ vli e+ +k+ ii+t + nldlip++++La+ e++  +
  CCG92839.1   1 MKFISIANQKGGVGKTTTAINLSACLAEKGYSTLLVDVDPQSNATSGVGFSLDS-GKSLFPVLIGEQLLKDQIISTPYMNLDLIPANLELANWENQQHD 98 
                 799**********************************************96555.79****************************************** PP

      AAA_31 100 lekkeeilkellek..vkdeYDyiiiDcpPsLglltenaLvasdsviipvqaeayaleGleqllktieevkkk 170
                   ++ + +++++++  +   Y y+i+DcpP+Lgll++n++va+d +iip+q+e+yaleGl+++++ ++++kk 
  CCG92839.1  99 PIESFSFFRKIFREslIGTAYQYVILDCPPALGLLMVNSMVAADWLIIPIQCEYYALEGLAKMFQLLDNLKKL 171
                 99998888888865347899**********************************************9999885 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
      AAA_31  38 lDpQanattglgie.kneiektlyevl 63 
                  D+ +n+++++  + +++i + +++++
  CCG92839.1 186 YDSRTNLSQQVVEDvRKHIPNLVFDTI 212
                 455555555443321333333444443 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   4.7e-30   6.1e-27       1     128 []       4     229 ..       4     229 .. 0.96

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 4.7e-30
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 i+ia++kGGvGKTt+a+nL ++la++g+ +llvD+Dpq+n+++   g+   ++                                              
  CCG92839.1   4 ISIANQKGGVGKTTTAINLSACLAEKGYSTLLVDVDPQSNATS---GVGFSLDSgkslfpvligeqllkdqiistpymnldlipanlelanwenqqhdp 99 
                 78****************************************9...6666666677889999************************************* PP

                 .........................................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHH CS
                 .........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .........................................................dlkrllellealgkkkalllkiagvvlnrvdgeneetllkea 96 
                                                                          +l ++ +ll +l+k ++ + +i+g++ +++d++  ++l ++ 
  CCG92839.1 100 iesfsffrkifresligtayqyvildcppalgllmvnsmvaadwliipiqceyyaleGLAKMFQLLDNLKKLVSSAPNILGILMTMYDSR--TNLSQQV 196
                 **********************************************************************999999**************..9999999 PP

                 HHHHHHHCTS-EEE.EEE--CCHCCCCHHTS-H CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
        CbiA  97 leelkqrygvpvlg.viprdeavaeapargepv 128
                 +e++ +++++ v++ +ipr++++aeap+ g+p+
  CCG92839.1 197 VEDVRKHIPNLVFDtIIPRTVRLAEAPSYGKPI 229
                 99998888**********************997 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   3.2e-12   4.1e-09       1     228 [.       1     244 [.       1     250 [. 0.80

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 3.2e-12
    CBP_BcsQ   1 mkvlalqGvRGGvGttsllaaLawalhelgesvlviDlspdnlLrlhFnvdieqregwaraeldgapwrqaaley.apgldllPfGelnveekenlqq. 97 
                 mk++ +   +GGvG+t+ +  L+  l e g+s l++D+ p+   +      +++ +++   ++ ++ ++++++     +ldl+P  +l+ ++ en q+ 
  CCG92839.1   1 MKFISIANQKGGVGKTTTAINLSACLAEKGYSTLLVDVDPQSNATSGVGFSLDSGKSLFPVLIGEQLLKDQIISTpYMNLDLIP-ANLELANWENQQHd 98 
                 899999999*******************************98888888888889***************9998763679*****.57777777777776 PP

    CBP_BcsQ  98 laekaeallaalkelk..eqyrwillDlpagasaltrellaladlvllvvepdanchvrLhq........qal....paaellLiNqfeaasqlqqDll 182
                   e+ + + + ++e    + y++++lD+p     l+ + +  ad  +  ++ +  +   L++        ++l    p+   +L+  ++   +l q ++
  CCG92839.1  99 PIESFSFFRKIFRESLigTAYQYVILDCPPALGLLMVNSMVAADWLIIPIQCEYYALEGLAKmfqlldnlKKLvssaPNILGILMTMYDSRTNLSQQVV 197
                 7888888888776533369*************9999999999****9999999765433332111111122221111333457999999999******* PP

    CBP_BcsQ 183 qlWlqslrrllPl.vihrDealaEalaakqPlgeyrpdslaaeevkt 228
                    +++  +l+   +i r   laEa  + +P++ y p+s+ +   ++
  CCG92839.1 198 EDVRKHIPNLVFDtIIPRTVRLAEAPSYGKPITLYDPHSIGCISYRK 244
                 *9999999987543889**********************98876665 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   5.5e-10     7e-07       4      41 ..       2      39 ..       1      46 [. 0.95
   2 ?    3.3   0.0     0.038        48     112     232 ..     119     236 ..     103     250 .. 0.63

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 5.5e-10
        ParA  4 kviavlSgKGGVGKStvavnlAlaLakkglkvgllDaD 41
                k+i ++  KGGVGK+t+a+nl++ La+kg+++ l+D+D
  CCG92839.1  2 KFISIANQKGGVGKTTTAINLSACLAEKGYSTLLVDVD 39
                578999*******************************9 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.038
        ParA 112 lDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteifgkgggeklaeel.gvpllgei 209
                   y+i+D+PP  g   l v +++  +  +i    +  al+   k +++++++k  +++   N+ g+ ++  +++t++ +++ +e++ +++ ++ + + i
  CCG92839.1 119 YQYVILDCPPALG--LLMVNSMVAADWLIIPIQCEYYALEGLAKMFQLLDNLKK-LVSSAPNILGILMTMYDSRTNL-SQQVVEDVRKHIpNLVFDTII 213
                 5799******998..455555555555555566777888888888888888774.4455566666666666666554.344444444443145555556 PP

        ParA 210 pldpeireasdegkplvlkepes 232
                 p + +++ea   gkp++l +p+s
  CCG92839.1 214 PRTVRLAEAPSYGKPITLYDPHS 236
                 66667777777777666666665 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   3.5e-09   4.5e-06       2      42 ..       2      43 ..       1      68 [. 0.87
   2 !    5.1   0.0    0.0088        11     113     203 ..     103     198 ..      93     221 .. 0.59

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.5e-09
                 EEEEEE.ESTTSSHHHHHHHHHHHHHHTTS-EEEEE-STTTH CS
  ArsA_ATPase  2 kvilvg.GKGGVGKttvsaatavklsekgkkvllistDPAhs 42
                 k+i ++  KGGVGKtt +  +++ l+ekg+++ll+ +DP  +
   CCG92839.1  2 KFISIAnQKGGVGKTTTAINLSACLAEKGYSTLLVDVDPQSN 43
                 55554315*******************************776 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0088
                  HHHHHHHHH....CSSSSEEEEESBSCCHTCGGGGHHHHH..HHHHHHHHHHHHHHHHHHHHHCCCSHCHHHHHH...HHHHHHHHHHHHHHHHHHHH CS
  ArsA_ATPase 113 feellkyvk....eeeydvvvlDtaPTGhtlrllslpevl..eklleklvklkeklsplakqlvkllglggvsie...ealeeleetkeeikkveeil 201
                  f  + k  +    ++ y +v+lD +P    l+ll + +++  ++l+  +     +l+ lak+++  l+  ++ ++   + l  l +++++  ++++++
   CCG92839.1 103 FSFFRKIFResliGTAYQYVILDCPPA---LGLLMVNSMVaaDWLIIPIQCEYYALEGLAKMFQL-LDNLKKLVSsapNILGILMTMYDSRTNLSQQV 196
                  33333333333358899******9995...66665554431145555444444466666666633.33222222213366777777777666666665 PP

                  TS CS
  ArsA_ATPase 202 td 203
                   +
   CCG92839.1 197 VE 198
                  54 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.3e-08   4.2e-05       2      40 ..       3      41 ..       2      47 .. 0.91
   2 !    7.0   0.0    0.0025       3.2      88     140 ..     105     159 ..      69     173 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 3.3e-08
                EEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TT CS
        MipZ  2 vivlgnekGGsGksttavhvavaLlkkGarvaaidldlr 40
                +i ++n+kGG Gk+tta+ +  +L++kG +   +d+d +
  CCG92839.1  3 FISIANQKGGVGKTTTAINLSACLAEKGYSTLLVDVDPQ 41
                6899********************************975 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0025
                 HHHHHHHH..HHHH-SEEEEE--SS--HHHHHHHHT-SEEEEEEESSHHHHCCCE CS
        MipZ  88 eleelvad..leaeldfividtPGsdsalsrlahsladtlvtPlndsfvdfdllg 140
                  +++++++  + + + ++++d+P     l+  +   ad l+ P+   +  ++ l+
  CCG92839.1 105 FFRKIFREslIGTAYQYVILDCPPALGLLMVNSMVAADWLIIPIQCEYYALEGLA 159
                 4555655522467899***************************987776666555 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.5e-08   1.9e-05       8      44 ..      10      46 ..       4      71 .. 0.93
   2 ?   -0.4   0.0      0.48   6.1e+02     182     242 ..     187     247 ..     137     253 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.5e-08
   Fer4_NifH  8 kGGiGksttsqnlsaalaemgkkvlivGCDPkaDstr 44
                kGG+Gk+tt+ nlsa lae+g   l+v  DP++++t+
  CCG92839.1 10 KGGVGKTTTAINLSACLAEKGYSTLLVDVDPQSNATS 46
                9*********************************996 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.48
   Fer4_NifH 182 nsrkvddereliekfaeelgtkvle.vvPrdeivrkaelrkktvieyapeseqakeyrelar 242
                 +sr ++  ++++e+  ++++  v++ ++Pr+  + +a    k ++ y+p+s  +  yr++ +
  CCG92839.1 187 DSR-TNLSQQVVEDVRKHIPNLVFDtIIPRTVRLAEAPSYGKPITLYDPHSIGCISYRKFTE 247
                 333.5555666666677777666652568888888888888888888888888888877765 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   3.8e-06    0.0048       1      39 [.       1      39 [.       1      46 [. 0.92
   2 ?    2.6   0.0     0.056        71      81     175 ..     116     212 ..     101     226 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.8e-06
       VirC1  1 mklitfcslkGGaGkttalmglcsalasdgkrvalfead 39
                mk+i+++  kGG Gktt+ + l + la +g    l + d
  CCG92839.1  1 MKFISIANQKGGVGKTTTAINLSACLAEKGYSTLLVDVD 39
                899***************************999998887 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.056
       VirC1  81 geGfdyaladtrgGsselnntiiassdllliPtmltpldidealatyryviell..laeelaipvailrqrvPvrrltssqrlisdlleqlP..vvdvp 175
                 g+ ++y++ d       l    + ++d l+iP       ++   + ++ +++l   ++  ++i   il++ +  +r + sq+++ d+ +++P  v+d+ 
  CCG92839.1 116 GTAYQYVILDCPPALGLLMVNSMVAADWLIIPIQCEYYALEGLAKMFQLLDNLKklVSSAPNI-LGILMT-MYDSRTNLSQQVVEDVRKHIPnlVFDTI 212
                 556777777766555554444444568999999999888888888899999885325566665.456665.6678999*********999994445655 PP

>> DUF1611  Domain of unknown function (DUF1611_C) P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.8e-05     0.023      24      65 ..      13      54 ..       6      59 .. 0.96
   2 ?   -1.1   0.0      0.77   9.8e+02     135     187 ..     151     207 ..     148     213 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
     DUF1611 24 vGKrttaleleealeerGlkaafvaTgqtgiliagegvvlda 65
                vGK tta++l + l e+G+ + +v  ++++  ++g g+ ld+
  CCG92839.1 13 VGKTTTAINLSACLAEKGYSTLLVDVDPQSNATSGVGFSLDS 54
                8***************************************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.77
     DUF1611 135 peialppleeeieliealaakk....kvvgislNtknlseeeakealeeleeelglp 187
                 + +al++l+++ +l+ +l++      +++gi +   +   +  ++ +e++++ +   
  CCG92839.1 151 EYYALEGLAKMFQLLDNLKKLVssapNILGILMTMYDSRTNLSQQVVEDVRKHIPNL 207
                 568899999999999999888888888888888877777777777777777766555 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   6.8e-05     0.087       4      35 ..      12      43 ..      10      50 .. 0.90
   2 ?   -1.7   0.0       1.7   2.2e+03       4      32 ..      53      82 ..      51      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.8e-05
      CLP1_P  4 dsGKSTlarlLlNyalrkgrkpvyvDlDvGqs 35
                 +GK+T a +L   +++kg+++++vD+D+  +
  CCG92839.1 12 GVGKTTTAINLSACLAEKGYSTLLVDVDPQSN 43
                59**************************9765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.7
      CLP1_P  4 dsGKSTlarlLlNyalrkgrkpv.yvDlDv 32
                dsGKS +  l+ +++l+ +   + y++lD+
  CCG92839.1 53 DSGKSLFPVLIGEQLLKDQIISTpYMNLDL 82
                89***9999999999998876667888885 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1     5e-05     0.064      39      74 ..      12      47 ..       6      51 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5e-05
                TSSHHHHHHHHHHHHHCTT--EEEEEE--------- CS
        MeaB 39 GaGkstlvealglelrrrGkrvavlavDPsspftGG 74
                G+Gk t+  +l + l+++G+   ++ vDP s+ t G
  CCG92839.1 12 GVGKTTTAINLSACLAEKGYSTLLVDVDPQSNATSG 47
                9*******************************9988 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.7e-05     0.086      11      38 ..      12      39 ..       8      46 .. 0.92
   2 ?   -3.1   0.0         4   5.1e+03     137     155 ..     173     191 ..     165     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.7e-05
                TSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54 11 GaGKTttlaKLaallkkegkkvllvaaD 38
                G+GKTtt+  L+a l ++g+++llv +D
  CCG92839.1 12 GVGKTTTAINLSACLAEKGYSTLLVDVD 39
                9************************988 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4
                 HHHSSCSEEEEESTTSSSS CS
       SRP54 137 keavgitgviltklDgdak 155
                 ++a +i g+ +t  D++++
  CCG92839.1 173 SSAPNILGILMTMYDSRTN 191
                 5667888999999998876 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00063       0.8       6      37 ..      12      43 ..      10      46 .. 0.93
   2 ?   -0.6   0.0      0.71   9.1e+02      73      99 ..     104     127 ..      99     136 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00063
  ATP_bind_1  6 GsGKttfvgalseilelrgrsvavvNLDPAae 37
                G+GKtt   +ls  l ++g+s  +v  DP ++
  CCG92839.1 12 GVGKTTTAINLSACLAEKGYSTLLVDVDPQSN 43
                9****************************765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.71
  ATP_bind_1  73 eflresldwldeelekeeddyllfDtP 99 
                  f+r+ +   +e+l     +y+++D+P
  CCG92839.1 104 SFFRKIF---RESLIGTAYQYVILDCP 127
                 5555555...6666344569******9 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00027      0.35      41      60 ..      10      30 ..       2      45 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
      AAA_25 41 apgtGKttlaldlalava.tG 60
                 +g+GKtt a++l++++a +G
  CCG92839.1 10 KGGVGKTTTAINLSACLAeKG 30
                58****************655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 1726.27
//
Query:       CCG92840.1  [L=182]
Description: Ferritin [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-33  114.3   0.1    5.5e-33  113.9   0.1    1.1  1  Ferritin      Ferritin-like domain
    3.8e-07   30.6   0.5    6.9e-07   29.8   0.4    1.6  1  Rubrerythrin  Rubrerythrin
  ------ inclusion threshold ------
      0.097   12.1   0.0       0.17   11.2   0.0    1.3  1  Chalcone      Chalcone-flavanone isomerase
        0.1   12.5   0.1       0.38   10.7   0.0    1.9  3  HTH_43        Winged helix-turn helix


Domain annotation for each model (and alignments):
>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   0.1   1.2e-36   5.5e-33       4     141 ..      14     147 ..      12     148 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.9 bits;  conditional E-value: 1.2e-36
                 HHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS....SHHHHHHC-SSSS.CSSHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin   4 LneqladeltaayqylamawyvkgpgleglaeffdeqaeeerehadklaerilalGgtpvltraeleeieapke.fgsveevleaalehekkvteslre 101
                 L +q+  e++a ++yla+ +y++ + l++l++ff++qa+eer+ha k+++++++ +      ++++++i a+++ f+++e+++   le+e +vt+++++
  CCG92840.1  14 LYKQIGSEFQAFVLYLAIGSYFEIEALPELSAFFFKQADEERQHALKFIKFLIDNDI-----PVSIPAIGAVDSsFKDPESAISLSLEREIAVTKEIHD 107
                 889******************************************************.....************999********************** PP

                 HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin 102 lielaeeegDpatadfledfleeqeeheweleallekler 141
                 l++la+ee+D+++ +fl++f++eq e++  +++ll+ ++r
  CCG92840.1 108 LVRLAKEEKDFTSDNFLQWFVKEQLEEVTVMDQLLKMIRR 147
                 ***********************************99887 PP

>> Rubrerythrin  Rubrerythrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.4   1.5e-10   6.9e-07       6     112 ..      17     117 ..      13     134 .. 0.67

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.5e-10
                   HHHHHHHHHHHHHHHHHCHH.TT-HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHH.B.SSBBS-------TTGGHHHHHHHHHHHHHHHHHCHHH CS
  Rubrerythrin   6 AiagEssarrlYkelaekak.egypqiaelFeelAeeEreHakilnklleklepelelevkekvreyaeakpkflttaknLeeaiegayaeeeemyr 101
                    i +E++a+ lY ++ + ++ e +p+++++F + A+eEr+Ha +++k+l + +     ++   +++  + +p+    a +L+  +e+++a+ +e++ 
    CCG92840.1  17 QIGSEFQAFVLYLAIGSYFEiEALPELSAFFFKQADEERQHALKFIKFLIDNDIPVS-IPAIGAVDSSFKDPES---AISLS--LEREIAVTKEIH- 106
                   5789*********************************************99666666.3333333333333333...22333..556666666663. PP

                   HHHHHHHHTTS CS
  Rubrerythrin 102 fyeelaekegn 112
                    + +la++e++
    CCG92840.1 107 DLVRLAKEEKD 117
                   33444444433 PP

>> Chalcone  Chalcone-flavanone isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.9e-05      0.17      33      77 ..      23      67 ..      16      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.9e-05
                .EEEEEEEEEEEE-TTHHHHHHHHHTT--HHHHHH-HHHHHHHHH CS
    Chalcone 33 ekfvkftvigvyledkalkslsakWkgksaeeLtesvdffrdivt 77
                ++fv + +ig y+e +al++lsa +  ++ ee ++ ++f + ++ 
  CCG92840.1 23 QAFVLYLAIGSYFEIEALPELSAFFFKQADEERQHALKFIKFLID 67
                45999*******************999999999999999887765 PP

>> HTH_43  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.2   5.5e+03      41      61 ..      37      57 ..      36      63 .. 0.65
   2 ?   -2.5   0.0       1.1     5e+03      11      27 ..      61      78 ..      53      81 .. 0.78
   3 ?   10.7   0.0   8.5e-05      0.38       3      45 ..     115     157 ..     113     164 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
                HHGGGGGT-EEEEE-.-TTS-S CS
      HTH_43 41 lkalaeldielefvq.egernn 61
                ++al+el   + f+q + er++
  CCG92840.1 37 IEALPELSA-FFFKQaDEERQH 57
                678888874.456665666666 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
                HHHHHHHHS-B.-HHHHH CS
      HTH_43 11 ylaylideeea.nvpkli 27
                ++ +lid++   ++p++ 
  CCG92840.1 61 FIKFLIDNDIPvSIPAIG 78
                567889988877888875 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 8.5e-05
                 HHHHHHHHHHHHHHHHS-B-HHHHHHHH---HHHHHHHHHGGG CS
      HTH_43   3 kksflRrlylaylideeeanvpklieltgmPRRtlqDtlkala 45 
                 +k f+   +l + ++e+ ++v  + +l +m RRt +D +  ++
  CCG92840.1 115 EKDFTSDNFLQWFVKEQLEEVTVMDQLLKMIRRTGKDQIMLVE 157
                 566777889****************************997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1335.74
//
Query:       CCG92841.1  [L=415]
Description: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-38  132.0   0.0      3e-38  131.6   0.0    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    1.4e-12   47.5   0.0    3.8e-12   46.1   0.0    1.8  1  M20_dimer      Peptidase dimerisation domain
      3e-06   27.1   0.0    8.9e-06   25.5   0.0    1.8  2  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0     5e-42     3e-38       1     206 [.      93     411 ..      93     412 .. 0.92

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 5e-42
                    EEEEES-BSSTTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.THHHHHHHHHHTTTCESEE CS
                    xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.gGakallegleerekvdav 94 
                    l++sH+DvVp   +  w++ pf+++++d  +yGrG++dmkg+++a + a++alk  +i+p +++ +++++dEE+g+  G++ +++    ++ v+  
     CCG92841.1  93 LFNSHYDVVPVSGK--WKHdPFRGEKDDKWIYGRGSADMKGSLAASIFAVEALKTLKIDPLYNVQFALVADEEIGGeLGSGFVVK----NKLVEPD 182
                    699*******6666..*********9999********************************************8778********....6677777 PP

                    EEEEEESSSBTCHSTETEEEE........................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxx........................................................................... RF
  Peptidase_M20  95 felhieepgileagklaigvv........................................................................... 115
                    f  +++e+g  +    +ig++                                                                           
     CCG92841.1 183 FV-VVCEGGSAK----KIGIGhngilqlnirvlgtsthtayqqkavnsfletvhlveflerffkkiladtkrvyvapskeklkpivniggvvgsgp 273
                    74.466666666....366777799*********************************************************************** PP

                    .............................................EEEEEEEEEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHH CS
                    .............................................xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 116 .............................................kvevelleggapvtln.dsplvkalaeaaeelfgekvelivsgpggtdarf 165
                                                                 k+++e ++  +p +l  +s ++k +++a+e++ g k ++++   g+td+ f
     CCG92841.1 274 gskvnivsaettftidrrltpsekmdrveseireaiekwakkrgtKIKIEIIHKTEPCALGyNSNFTKSFKSAVEKIKGGKATFTINR-GATDMHF 368
                    ********************************************88****99************************888888888899.******* PP

                    HTTT.E.EEEEEESSGGCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxx.x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 166 fagi.p.tvmifgpgsglaHspnEyvdledlekgikvlarlle 206
                    fa+     ++++g +++++H+ +E+++ledl++ ++v+a +l 
     CCG92841.1 369 FAKAkNcEAIGYGVDGKDIHAIDEKTSLEDLVETTQVYATFLS 411
                    *666333668899666***********************9985 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   6.3e-16   3.8e-12       1     107 [.     197     315 ..     197     317 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 6.3e-16
                 SEB-EEEEEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC..............TCCTCCCCCEECCE-C...CCCEESSEEEEEEEEEHHHH CS
   M20_dimer   1 ighkGlaggkitvkgkagHsgapgagaNAieklarllaeledeegdia.........eerslprttlnvtgiegGs...aknvipdeaeakidiRllpg 87 
                 igh G+++ +i+v g++ H ++ ++++N++ + ++l++ le   ++i          +++   ++ +n++g+ g     + n++ +e++++id+Rl p 
  CCG92841.1 197 IGHNGILQLNIRVLGTSTHTAYQQKAVNSFLETVHLVEFLERFFKKILadtkrvyvaPSKEKLKPIVNIGGVVGSGpgsKVNIVSAETTFTIDRRLTPS 295
                 69*****************************888888888888444448999*99999999999999999999966899******************** PP

                 HHHHHHHHHHHHHHTSCCST CS
   M20_dimer  88 edpeevleeieeilekeape 107
                 e+ ++v+ ei+e++ek a++
  CCG92841.1 296 EKMDRVESEIREAIEKWAKK 315
                 **************997765 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.5e-09   8.9e-06       1      86 [.      79     177 ..      79     238 .. 0.88
   2 ?   -1.4   0.0      0.27   1.6e+03     117     161 ..     337     378 ..     285     405 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.5e-09
                    EEEEEESTTCESEEEEEEEE--B-TTT...........TCC....T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSG.SSHHHHH CS
  Peptidase_M28   1 NviatlegkatdevlllgAHyDsvgvg...........rgp....ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEa.gllGSka 80 
                    N+ia++++ka ++++l+++HyD v+v+           + +       G  D   + aa +  +++l++ + +p ++v+f+++  EE  g lGS +
     CCG92841.1  79 NLIARWNAKA-PKTVLFNSHYDVVPVSgkwkhdpfrgeK-DdkwiYGRGSADMKGSLAASIFAVEALKTLKIDPLYNVQFALVADEEIgGELGSGF 172
                    9*********.9**************9***999997752.24676567999999999999999999999999***************988999999 PP

                    HHHHHC CS
  Peptidase_M28  81 fakakp 86 
                     + +++
     CCG92841.1 173 VV-KNK 177
                    99.443 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.27
                    HHHHHHHHHHHHHTT-TTSCCEEEEES..STT-STTHHHHTTT.--EE CS
  Peptidase_M28 117 selekelkalakpvgraaaedpfders..grgrsDhspflkag.vpvl 161
                    s+++k +k+++++++  +       ++   rg +D   f+ka+   ++
     CCG92841.1 337 SNFTKSFKSAVEKIKGGK------ATFtiNRGATDMHFFAKAKnCEAI 378
                    344444444444444432......222125566777777766545555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      704  (0.039266); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3044.05
//
Query:       CCG92842.1  [L=507]
Description: Predicted Zn-dependent protease, modulator of DNA gyrase, TldD protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-42  144.8   0.0    5.7e-42  144.5   0.0    1.1  1  PmbA_TldD  Putative modulator of DNA gyrase


Domain annotation for each model (and alignments):
>> PmbA_TldD  Putative modulator of DNA gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5   0.0   3.2e-46   5.7e-42      11     279 .]      51     349 ..      41     349 .. 0.82

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 3.2e-46
                 EEEEEEETTEEEEEEEEEEEEEEEEEEETTEEEEEE...ESSHHHHHHHHHHHHHHCCS---TT-......................GGS-HHHHHHHH CS
   PmbA_TldD  11 stsvrfengevetnsssedsglgvrvikggrlgfastldtsdealeeaveraveiaklapedpea......................eevsaeekiell 87 
                  + +  +++++e+++ s +sg+g+rv+ +g +gfas++ ++ ++ +e  ++ave ak+  + + +                        v+ eek+++l
  CCG92842.1  51 KERIISRENRIEELGGSFESGIGIRVLFEGTWGFASSNLLDPNEAAEKTKEAVEVAKKCLKLNPRrveleklpqiqgqwhqdvlvdpFGVPLEEKTSFL 149
                 6677889***************************776655553555555556666643333333356669***************99999999999999 PP

                 HHHH.HH.CHCSTTEEEEEEEEEE......EEE.EEEEEEETTSEEEEEEEEEEEEEEEEEE...STCS....ET.EEEEEEEESSHHHS..SSHHHHH CS
   PmbA_TldD  88 eele.kalrsadpkienskgarisgvsaslsaskeeklianSeGldveqtrtrvslslsvia.d.dggs....gd.gmgggsgyedleeedleeiaeea 178
                 ++l+ ka+++           +++  +++   +ke +++a+S G+ +eqt  r+++ + v++ d + g+     + + ++ +g e +e++ +e+ + ea
  CCG92842.1 150 LDLNdKAIKA-----------GADFCRSFFLFHKELRIYASSIGSWIEQTFLRTYPKFIVTVvDkKEGKfesrSSfEPPKSGGLEIIEKKAFEREVVEA 237
                 9999444332...........444555555666699*******************99999998855333333433334444444666669999****** PP

                 HHHHHCTTT-B---SEEEEEEE-HHHHHHHHHGHHHHHTBHHHHH......TT--TTTT.-TTS.B-S-TT--EEEETT-......-SB-TTSBB--.. CS
   PmbA_TldD 179 aekalasleakplppgkypVvlspeavgsllheavghaleadavl......egrSflkd.klGe.kvaselltivddpts.gglgsypfDdEGvptq.. 266
                   +a+++l+ak++ pg  ++vl+p  +++++he++gh++e+d+v       +g+Sflk  +lG+   as+ +ti  d ++ ggl+s ++Dd+G+p++  
  CCG92842.1 238 THQAKEKLHAKSVVPGIKDLVLHPTNLWLTIHETIGHSTELDRVMglesnyAGTSFLKVdQLGNfDFASPIVTIRADRNQpGGLASVGYDDDGIPSSws 336
                 ************************************************9999*****8866***********************************999 PP

                 -EEEEETTEE--- CS
   PmbA_TldD 267 rtvlIenGvLkny 279
                 +  +Ie+G+Lkn+
  CCG92842.1 337 DFLIIEKGILKNF 349
                 999*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3340.30
//
Query:       CCG92843.1  [L=447]
Description: Predicted Zn-dependent protease, modulator of DNA gyrase, PmbA protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-39  136.0   0.0    3.1e-39  135.5   0.0    1.1  1  PmbA_TldD  Putative modulator of DNA gyrase


Domain annotation for each model (and alignments):
>> PmbA_TldD  Putative modulator of DNA gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.5   0.0   1.7e-43   3.1e-39       9     278 ..      31     313 ..      24     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 135.5 bits;  conditional E-value: 1.7e-43
                 EEEEEEEEETTEEEEEEEEEEEEEEEE.EEETTEEEEEE...ESSHHHHHHHHHHHHHHCCS---TT-...................GGS-HHHHHHHH CS
   PmbA_TldD   9 sestsvrfengevetnsssedsglgvr.vikggrlgfastldtsdealeeaveraveiaklapedpea...................eevsaeekiell 87 
                 ++  ++r+ ++ + tn+ +++  +++   + ++r+++ + ++++ +a+e+ ++r +++a+ +p+dpe                    +++s+e  +e++
  CCG92843.1  31 GQFVNIRIGRNALNTNGIENSLKITLNsTF-ENRTASYTIDQLEMSAIERGLRRCEKLAQISPPDPEFlpplgpqhytssfsysesmGSLSIENIVEIA 128
                 556789999******************666.678888553333335**************************999999666665555555555555554 PP

                 HHHHHH.CHCSTTEEEEEEEEEE......EEE.EEEEEEETTSEEEEEEEEEEEEEEEEEE.STCSETEEEEEEEE.....SSHHHS..SSHHHHHHHH CS
   PmbA_TldD  88 eelekalrsadpkienskgarisgvsaslsaskeeklianSeGldveqtrtrvslslsviaddggsgdgmgggsgy.....edleeedleeiaeeaaek 181
                  ++ + l + ++        +    s+++  +k  + ianS+Gl+++q+  +++l +++++     +d  g gsg+     +++ee+d+e+++e a++k
  CCG92843.1 129 VKILDVLTQNQN--------QQIELSSFIKFQKYFICIANSNGLFGYQKFANIQLTATART-----ND--GLGSGWsgafvFNIEEIDPEKLIETAIQK 212
                 444433222222........33334455666667799****************77777777.....22..4466666788889999************* PP

                 HHCTTT-B---SEEEEEEE-HHHHHHHHHGHHHHHTBHHHHHTT--TT.....TT-TTSB-S-TT--EEEETT-......-SB-TTSBB---EEEEETT CS
   PmbA_TldD 182 alasleakplppgkypVvlspeavgsllheavghaleadavlegrSfl.....kdklGekvaselltivddpts.gglgsypfDdEGvptqrtvlIenG 274
                 a  s+e  +  pg ypV+l+p a+ +l++ ++  +++++a++egrS++     ++++Ge ++++++ti++dp + +++g   f  +G+p+++ ++I+nG
  CCG92843.1 213 ATLSKEKLSMAPGHYPVLLEPTAAVDLIGLML-FSMDGRAADEGRSVFskpggGNRIGEPLFPSNITIYSDPSNrQAPG-QVFSNDGLPCRKIPWIQNG 309
                 *****9999********************766.6**************99985558****************8644444.67***************** PP

                 EE-- CS
   PmbA_TldD 275 vLkn 278
                 +L n
  CCG92843.1 310 ILSN 313
                 **87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3297.95
//
Query:       CCG92844.1  [L=826]
Description: Leucyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-70  236.5   4.7    2.2e-34  118.7   2.2    5.1  3  tRNA-synt_1    tRNA synthetases class I (I, L, M and V)
    1.1e-66  223.9   0.0    1.8e-66  223.2   0.0    1.4  1  tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
    1.7e-29  102.8   0.6    1.7e-20   73.2   0.0    4.0  4  tRNA-synt_1g   tRNA synthetases class I (M)
    1.2e-24   87.0   0.2      3e-24   85.7   0.2    1.6  1  Anticodon_1    Anticodon-binding domain of tRNA
    0.00075   18.9   0.0      0.059   12.7   0.0    2.5  2  tRNA-synt_1e   tRNA synthetases class I (C) catalytic domain
  ------ inclusion threshold ------
      0.075   12.0   0.0        1.2    8.0   0.0    2.2  2  tRNA-synt_1d   tRNA synthetases class I (R)


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.1   4.2e-15   1.2e-11       2      78 ..      16      95 ..      15     100 .. 0.90
   2 !  118.7   2.2   7.4e-38   2.2e-34     110     350 ..     110     416 ..     105     425 .. 0.87
   3 !   65.4   0.0     1e-21   3.1e-18     415     589 ..     425     613 ..     415     626 .. 0.74

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 4.2e-15
  tRNA-synt_1  2 lyekWeeedvfkkel..ekekekkefilvdgPPyvtGs.lHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaiea 78
                 +++ W + ++f+++   e   ek++f + d  Py  Gs lH+Gh    t  div rykrmkG++vl+ +GwD  Gl+ e+
   CCG92844.1 16 WQHYWFDRELFRAADpgEMGSEKPKFYVLDMFPYPSGSgLHVGHLEGYTASDIVARYKRMKGFNVLHPMGWDAFGLPAEQ 95
                 7889*******9986225556699*************879*************************************997 PP

  == domain 2  score: 118.7 bits;  conditional E-value: 7.4e-38
  tRNA-synt_1 110 eyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkk....................... 184
                  + +++ r+q++ +G s+D++re  T d+++ + ++++f+rl++kgl y ++ +v +++klkt+l++ E+ +  +                        
   CCG92844.1 110 QNIDNFRRQIQSMGFSYDWKREINTTDPSYYKWTQWIFKRLFEKGLAYVAEAPVWYCPKLKTVLANEEIVHTPEGprsergnhpvikkpfrqwflkit 207
                  567899***************************************************************66655568899****************** PP

  tRNA-synt_1 185 .............................dalihvafpladkeevklviaTTtPeTllgdtavavnpeldyv...itkeklilaeallkslvkke.se 249
                                               +    v+f +++k+  ++++ TT+P Tl+g t ++++pe   v   ++     l+e+   +   k+  e
   CCG92844.1 208 ayaeklleglelvewpesikemqrhwigkSEGAVVKFSVEGKDI-EIEVFTTRPDTLFGVTFLVLAPENPLVtklTESGFKELVEQYCAATSLKTdLE 304
                  ***************************9988899*****98877.***********************888866422222334444444433333244 PP

  tRNA-synt_1 250 kkiledergkeLegkevelplvnrkipiiaddyvdkeaGtGvVkiaPahdedDyevgkkynlevinildedgtlteea............aefeglkv 335
                  ++ l +++    +g ++++p++n+k+pi   dyv +  GtG++   Pahd  Dy  +k + l++  +++++ +++ee+            +  +gl  
   CCG92844.1 305 RTELSKNKTGVWTGSYAIHPITNEKLPIWISDYVLMTYGTGAIMAVPAHDRRDYDFAKTFSLPIKKVVTAE-RIEEETdcytgegitvhsGFISGLAT 401
                  4444555666789999**********************************************999999887.5666666899999**9966668**** PP

  tRNA-synt_1 336 fdarkkvveelkekg 350
                  ++a++k+++ l+ek 
   CCG92844.1 402 KEAKEKIIQWLEEKK 416
                  ************995 PP

  == domain 3  score: 65.4 bits;  conditional E-value: 1e-21
  tRNA-synt_1 415 niqdWciSRqrwWGhriplfvsketeevvvreelkelvagr..eeeeaekkalekeakdklkkekgelekdedvlDvWFsSg.....swpfstlgype 505
                    +dW +SRqr+WG++ p+  +++   +v +eel  l  ++  ++ ++e  a     kd + +  + l+++ +++  W  S          s  + p+
   CCG92844.1 425 KLRDWLFSRQRYWGEPFPIIWKENAPILVPDEELPVLLPDLedFTPTDEGIAPLARKKDWV-ELGNGLKREVNTMPQWAGSCwyylrYCDPSNKETPF 521
                  479****************999999988888887766554411444455555555566666.444568888888887777761111144567888899 PP

  tRNA-synt_1 506 edteelkkffp..admlleGlDi.......irgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRlt 589
                   +++e   ++p   d+++ G           r+W + l  ++l     ePf +++ +g+++ e+ +KmSKs gN+++p+ ++++ygad lRl+
   CCG92844.1 522 ATEKERYWMHPhgVDLYIGGAEHavlhllyARFWHKVLYDIGLV-STPEPFYKLVNQGVILGEDNQKMSKSRGNIVNPDAIVQEYGADTLRLF 613
                  88888776776337999999986333333258999988888875.4567******************************************97 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.2   0.0   6.1e-70   1.8e-66       1     185 []     231     413 ..     231     413 .. 0.96

  Alignments for each domain:
  == domain 1  score: 223.2 bits;  conditional E-value: 6.1e-70
  tRNA-synt_1_2   1 rnWIGrseGleiefkveeseeklevfttrpdtlfGvtfvalapehplvekl..aekkkelaafieevkkksesereletkekeGvftglkaihPit 94 
                    r+WIG+seG+ ++f+ve+++ ++evfttrpdtlfGvtf++lape+plv+kl  +  k+ ++++++ ++ k++ er+  +k+k+Gv tg++aihPit
     CCG92844.1 231 RHWIGKSEGAVVKFSVEGKDIEIEVFTTRPDTLFGVTFLVLAPENPLVTKLteSGFKELVEQYCAATSLKTDLERTELSKNKTGVWTGSYAIHPIT 326
                    79*************************************************54455899************************************* PP

  tRNA-synt_1_2  95 gekipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikpedeekkleeseeayteegilvnsgefdglkskeakekiakkle 185
                    +ek+piw+++yvlm+ygtga+mavPahd+rD++Fak++ lpik+v++ e     +ee++++yt+egi v+sg+++gl +keakeki+++le
     CCG92844.1 327 NEKLPIWISDYVLMTYGTGAIMAVPAHDRRDYDFAKTFSLPIKKVVTAER----IEEETDCYTGEGITVHSGFISGLATKEAKEKIIQWLE 413
                    ***********************************************766....455678****************************986 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   5.6e-24   1.7e-20       6     136 ..      46     179 ..      41     192 .. 0.92
   2 ?    2.4   0.1     0.018        54     173     220 ..     190     236 ..     183     243 .. 0.81
   3 ?    1.1   0.1     0.043   1.3e+02     210     239 ..     414     445 ..     398     453 .. 0.76
   4 !   21.1   0.0   3.8e-08   0.00011     295     362 ..     555     622 ..     501     631 .. 0.77

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 5.6e-24
                   --B--SS-.--HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S..EEEETTSHHHHHH CS
  tRNA-synt_1g   6 alpYangk.lHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfd..kygrttseehkel 99 
                    +pY++g+ lH+Ghl  + ++Di+aRykr++g +vl+  g D++G p e++A   g++p+  ++++ ++++++ ++++ s+d    ++tt+ + ++ 
    CCG92844.1  46 MFPYPSGSgLHVGHLEGYTASDIVARYKRMKGFNVLHPMGWDAFGLPAEQHAILTGTHPAVTTKQNIDNFRRQIQSMGFSYDwkREINTTDPSYYKW 142
                   5799998758***********************************************************************9434578********* PP

                   HHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-E CS
  tRNA-synt_1g 100 vqeifkklkekgliyekeieqlycpkderflpdryve 136
                   +q ifk+l ekgl y  e  ++ycpk ++ l+++++ 
    CCG92844.1 143 TQWIFKRLFEKGLAYVAEAPVWYCPKLKTVLANEEIV 179
                   ********************************99984 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.018
                   ....EEE..EEEEEE-GGGGHHHHHHHH.HH-TTSHHHHHHHH.HHHHT CS
  tRNA-synt_1g 173 gskpevke.tehlffklskfekklkewieeeekeleenvkkivkewlke 220
                   g++p++k+  +++f+k+ ++++kl e +  e  e++e++k++ ++w+ +
    CCG92844.1 190 GNHPVIKKpFRQWFLKITAYAEKLLEGL--ELVEWPESIKEMQRHWIGK 236
                   556655441689****************..4446************964 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.043
                   HHHHH.HHHHT----EE-ESS-SSS-EET..T CS
  tRNA-synt_1g 210 vkkivkewlkegLkdlaisrdldwGipvP..g 239
                    kk  k +++  L+d+  sr+  wG p+P   
    CCG92844.1 414 EKKLGKRMVQYKLRDWLFSRQRYWGEPFPiiW 445
                   456678899999*************9999552 PP

  == domain 4  score: 21.1 bits;  conditional E-value: 3.8e-08
                   HHHTHHHHHHHHTT----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-TTS CS
  tRNA-synt_1g 295 FHtifwPaillgaelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeapekk 362
                   +H +++ + l ++   + k v     l  +++K+SkSrg++v ++ +++++ ad+lR + +  +p ++
    CCG92844.1 555 WHKVLYDIGLVSTPEPFYKLVNQGVILGEDNQKMSKSRGNIVNPDAIVQEYGADTLRLFEMFLGPLQQ 622
                   3555555555555555666666666777889**************************99888877766 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.2     1e-27     3e-24       4     151 ..     669     785 ..     667     786 .. 0.87

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 1e-27
  Anticodon_1   4 ilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkraaqevllevletllrllaPfmPfitEelwqreeeelgkkes 101
                  il+  +++++ vte++e+++f++a+++l++f +n+l       +k++             +  ++vle ll ll+Pf+P+i+Eelw    +++g+k+s
   CCG92844.1 669 ILRLQHQTIAGVTEDIENFQFHTAIAKLMTF-VNEL-------TKEK-------------KRWKKVLEDLLLLLSPFAPHICEELW----QKMGHKDS 741
                  788889************************7.7877.......4443.............23679*********************....999***** PP

  Anticodon_1 102 imlaewpe.kaeelekeleeeevellkeivkairklrselkikpsselkvv 151
                  + +++wp+ ++++l     +ee+el   iv++ +k+r+++ +k+  e++ v
   CCG92844.1 742 LAYEPWPKyDPKYLI----DEEIEL---IVQIDGKVRGRIMVKKGIEKEEV 785
                  *******88887663....336899...***************99886655 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.016        46      23      49 ..      55      81 ..      41      88 .. 0.94
   2 !   12.7   0.0     2e-05     0.059     249     279 ..     583     613 ..     569     621 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.016
                  -BHHHHHHHHHHHHHHHHHHHTT-EEE CS
  tRNA-synt_1e 23 shlGhaRslvafDilrrilqalgYdvq 49
                   h+Gh   + a Di++r+ +++g++v 
    CCG92844.1 55 LHVGHLEGYTASDIVARYKRMKGFNVL 81
                  6***********************995 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2e-05
                   ETTBE--TTTT---BHHHHHTTS-HHHHHHH CS
  tRNA-synt_1e 249 iegekmsksLknfitikdvlkkfdprqlRll 279
                    +++kmsks +n++   ++++++ + +lRl+
    CCG92844.1 583 EDNQKMSKSRGNIVNPDAIVQEYGADTLRLF 613
                   489**************************97 PP

>> tRNA-synt_1d  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.042   1.3e+02      35      61 ..      55      81 ..      41     120 .. 0.93
   2 ?    8.0   0.0   0.00041       1.2     268     297 ..     575     604 ..     548     614 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.042
                  -BHHHHHHHHHHHHHHHHHHHCT-EEE CS
  tRNA-synt_1d 35 mhvGhLrstiiGdavsrlleflGydvi 61
                  +hvGhL      d v+r   + G++v+
    CCG92844.1 55 LHVGHLEGYTASDIVARYKRMKGFNVL 81
                  8************************98 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00041
                   EEE--EE-TTSSBSBCSSSTC-BHHHHHHH CS
  tRNA-synt_1d 268 anfGmvlgkdkkkfktrkGetvkLadlLde 297
                    n G++lg+d++k++  +G++v+ + +++e
    CCG92844.1 575 VNQGVILGEDNQKMSKSRGNIVNPDAIVQE 604
                   578********************9999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.54
# Mc/sec: 4591.19
//
Query:       CCG92845.1  [L=113]
Description: Fe-S cluster assembly scaffold protein, HesB/SufA family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-16   58.4   0.0    8.1e-16   58.2   0.0    1.0  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   4.5e-20   8.1e-16       2     110 ..      10     108 ..       9     109 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 4.5e-20
                  EEEE-HHHHHHHHHHHHCTTEC.EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEEE CS
  Fe-S_biosyn   2 kitlteaAaeklkkllaedkke.lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLks 98 
                  +itlt+ A  k+kkl +++++  lrL+v  gg       C+ g +y l+l   + +e d+ l+ +++ v ++++s+ +l  g ++d++e+l++ g++ 
   CCG92845.1  10 NITLTPMALSKIKKLTDSHPGYmLRLSVTKGG-------CA-GNEYLLELAV-P-KEKDIRLQIEDVFVAIDPESSHLL-AGSTIDYKEGLTQGGFRI 96 
                  79******************99**********.......**.********88.4.79**********************.9***************** PP

                  ETCCEEEEEEEE CS
  Fe-S_biosyn  99 dngilddnvglg 110
                   n+ +++++g+g
   CCG92845.1  97 INPQAKSTCGCG 108
                  ***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 795.93
//
Query:       CCG92846.1  [L=231]
Description: Nucleoside phosphorylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-18   64.3   0.6    4.7e-08   32.6   0.4    2.1  2  PNP_UDP_1  Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.5e-11   2.6e-07       6     101 ..       6      97 ..       1     110 [. 0.83
   2 !   32.6   0.4   2.6e-12   4.7e-08     148     203 ..     112     167 ..     104     189 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.5e-11
                 ESSHHHHHHHHHHEEEEEEEEEE.TTEEEEEEEETTEEEEEEE--SSHHHHHHHHHHHHHHHC--SEEEEEEEEEESSTTT-TT-EEEEEEEEESS CS
   PNP_UDP_1   6 vgspgevellaespleetpfgregrgfkfvtGtlkgkpvvivstGiGkpnaavvaeirllkefgvkaiiriGtaGglnpdlkvGDvvipddainfd 101
                  ++++e + ++++   + + +    g  f++G++  k+++    G+Gk  +a + +  ll  f++  +i  G +G+l p+++ G v   ++++  +
  CCG92846.1   6 FAIEHEGKEILDH-VLKEKKEV--EGHVFYLGKYAHKTICGMVLGMGKRKSA-RSAELLLRNFSPSLFILAGYSGALVPAIRKGEVCAVENYLSEE 97 
                 5566777777777.33333333..479*************************.*********************************9988887655 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 2.6e-12
                 EEEESESS-CHHHHHHHHHHTC-CEEESSHHHHHHHHHHTT--EEEEEEEEETTTB CS
   PNP_UDP_1 148 vatadgfyaeteaelrllrrlgadaveMEtaavaqlArelgipfaairvvsdlaag 203
                 ++++d ++a+ e ++++ +   a++v+MEt av+  A+ +g+ f++irv+sd++++
  CCG92846.1 112 TVCSDVIVADPESRSKMAQLSAAQIVDMETEAVYNTAQAHGVAFCSIRVISDEYGD 167
                 799********99999************************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1536.96
//
Query:       CCG92847.1  [L=689]
Description: Squalene-hopene cyclase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.4e-137  457.3   4.8   4.4e-132  440.0   3.3    3.8  4  SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
     7e-117  389.7   3.3   5.6e-106  353.9   0.0    5.4  5  SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
    2.4e-38  129.5  10.3    1.7e-11   43.7   0.3    7.9  8  Prenyltrans      Prenyltransferase and squalene oxidase repea
    2.5e-06   26.7   0.1       0.45    9.5   0.0    4.6  4  TED_complement   A-macroglobulin TED domain
     0.0011   18.4   1.5          2    7.6   0.0    4.5  5  Pec_lyase        Pectic acid lyase


Domain annotation for each model (and alignments):
>> SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0015       5.5     206     226 ..      39      59 ..      22      69 .. 0.57
   2 !    7.2   0.0   0.00066       2.4     146     213 ..      74     141 ..      64     147 .. 0.78
   3 ?   -0.4   0.0      0.14     5e+02     192     219 ..     301     328 ..     268     336 .. 0.76
   4 !  440.0   3.3  1.2e-135  4.4e-132       1     318 [.     344     661 ..     344     662 .. 0.99

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0015
                      SHHHHHHHHHHHTT--TTSSB CS
  SQHop_cyclase_C 206 epvirkavdWlksvqnedGGW 226
                      e++i+ka ++l s+q+edG W
       CCG92847.1  39 EKTIKKAQRYLLSIQKEDGHW 59 
                      334444444444444444444 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00066
                      HHHHHHHT--TTSHHHHHHHHHHHHHS-TTS----S.SBSSHHHHHHHHHHHHHHTT--TTSHHHHHHH CS
  SQHop_cyclase_C 146 lellaqlgeeedsealkraveylkkeqepdGsWfGr.WGvnyiyGtwsvlsalaavgedleepvirkav 213
                      ++l+ ++  + d ++ kr v+++  +q pdG W     G   +  t+++  al+ +g   +ep+++ka 
       CCG92847.1  74 IHLM-HWRGKIDYKKQKRLVKHILDRQLPDGGWNIYpGGPSEVNATVKAYFALKLAGFSPDEPLMAKAR 141
                      4444.344455677889****************765146789999************999999999986 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.14
                      HHHHHHHHTT--TTSHHHHHHHHHHHTT CS
  SQHop_cyclase_C 192 svlsalaavgedleepvirkavdWlksv 219
                       +++al a+g  +++p+++ka+  ++s 
       CCG92847.1 301 YAIMALIALGYTEDNPILKKAITDFESL 328
                      5678888888888888888887766654 PP

  == domain 4  score: 440.0 bits;  conditional E-value: 1.2e-135
                      --HHHHHHHHHHHHHHHT--TT-HHHHHHHHHHHTT-B-S--GGGGT-TTS---BB-SSSS-TT--BHHHHHHHHHHHTT---STHHHHHHHHH CS
  SQHop_cyclase_C   1 vsPvWdtalavlalleagveaeeealkkaleWllekqvlvkGdWkvkrpevepgGwafefaneyyPdvddtavvvlalkrvrlkeekkkeeaia 94 
                      +sP+Wdta+ ++al+e+g e++ ++lkka++W+++++++ kGdW v++p+ e++Gwafe++n yyPdvddt +v+lal+ + ++++ kkee ++
       CCG92847.1 344 LSPLWDTAIGLVALAESGYERNAPQLKKAAHWIINREIRIKGDWYVRNPHPEASGWAFEYNNMYYPDVDDTLMVLLALRLIDIDDKIKKEEVMQ 437
                      59******************************************************************************************** PP

                      HHHHHHHHTB-TTSSB-SSSSSB--SGGGGSTT-SSS-SSB--BHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHS-TTS----SSBSSHHH CS
  SQHop_cyclase_C  95 raveWilglqsknGGwaafdkdntkellnkiPfadhealldpptadvtarvlellaqlgeeedsealkraveylkkeqepdGsWfGrWGvnyiy 188
                      ra++W++++q++nGGwaafdk+  k+ l++iPfadh+a+ldpp++d+tar lel++++g +++++ +++a+ ylk++qe+dGsW GrWGvnyiy
       CCG92847.1 438 RALRWVISFQCENGGWAAFDKNVYKKWLEDIPFADHNAILDPPCSDITARALELFGKMGIRKNEKFVQKAIRYLKETQESDGSWMGRWGVNYIY 531
                      ********************************************************************************************** PP

                      HHHHHHHHHHHTT--TTSHHHHHHHHHHHTT--TTSSBB--GGGGT-GGGTT-SSBBHHHHHHHHHHHHHTTGGGSHHHHHHHHHHHHH--TTS CS
  SQHop_cyclase_C 189 GtwsvlsalaavgedleepvirkavdWlksvqnedGGWGesaesykdpklagkgestasqtaWallallaageveseavkrGiaylletqkedG 282
                      Gtw++l++l+a+ged+++++i +a dWl+s qnedGGWGe+  sy++p+l gkg+stasqtaWa+ +++a+g++ +++++rGi+yl e+q +dG
       CCG92847.1 532 GTWQALRGLQAIGEDMNQEWILRARDWLESCQNEDGGWGETPASYDNPQLKGKGPSTASQTAWAISGIMACGDIFRPSITRGIKYLCERQLSDG 625
                      ********************************************************************************************** PP

                      -----S--EEEETTTEEEEETTHHHHHHHHHHHHHH CS
  SQHop_cyclase_C 283 tWeeeaytgtGfPrvfylkyhlyrkvfPllalaryr 318
                      +W ee  tgtGfP vfylky +yr+ +Pll +++y 
       CCG92847.1 626 SWAEEFLTGTGFPGVFYLKYDMYRNAWPLLVIGEYY 661
                      *********************************995 PP

>> SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.9   0.0  1.6e-109  5.6e-106       1     290 [.      42     333 ..      42     334 .. 0.97
   2 !    3.9   0.0    0.0066        24      82     106 ..     355     379 ..     348     384 .. 0.90
   3 !    5.2   0.0    0.0028       9.9      41      68 ..     430     457 ..     410     462 .. 0.78
   4 !   17.2   1.4   6.1e-07    0.0022       1      66 [.     504     571 ..     504     578 .. 0.82
   5 ?    3.2   0.0     0.011        39      49      65 ..     612     628 ..     600     636 .. 0.81

  Alignments for each domain:
  == domain 1  score: 353.9 bits;  conditional E-value: 1.6e-109
  SQHop_cyclase_N   1 ikraaeallslqkpdGhWvgeLeanvtitaeyillreflgeddeeeeekiakylrsqqredGgWelypggpgdlsttveaYlALkllGdspdap 94 
                      ik+a+++lls qk+dGhWvgeL  +vt+ +++i l+++ g++d +++++++k+++++q +dGgW++ypggp+++++tv+aY+ALkl+G spd+p
       CCG92847.1  42 IKKAQRYLLSIQKEDGHWVGELFVDVTLACDCIHLMHWRGKIDYKKQKRLVKHILDRQLPDGGWNIYPGGPSEVNATVKAYFALKLAGFSPDEP 135
                      799******************************************************************************************* PP

  SQHop_cyclase_N  95 alarArefilarGGvakvrvfTrilLalfglvpweavpalPpelmlLPkwfpfniykfsswaRttivPllilsakkpvaklprevdldELfvep 188
                       +a+Ar++il+ GG++k+ ++T++ Lal+g++pw+++p++Ppe++l+P+wfpfn+y++s+w+Rt++vPl+i+++ kp++ lp++ +l+ELf+ +
       CCG92847.1 136 LMAKARSTILRLGGIPKCMTYTKLGLALLGVYPWDRLPVIPPEIILFPNWFPFNLYEISAWSRTMLVPLSIIHHFKPTRILPEKLQLHELFPYG 229
                      *********************************************************************************************9 PP

  SQHop_cyclase_N 189 peevkye.lrkekkalswtklflaldkvlkllerlplkplrkrAlrkaeewilerqea.sgglggifpamvnsvlaLrllgydldhpvvarale 280
                      +e+ k++ l+k +k ls ++lfla+dk+l+++++++lkp+rk A++kae+wiler+ a s+glg+ifpam+++++aL +lgy++d+p +++a++
       CCG92847.1 230 TERGKFSwLKKGAKYLSKEGLFLACDKFLQYWDKTSLKPFRKMAIEKAEKWILERIAAgSDGLGAIFPAMHYAIMALIALGYTEDNPILKKAIT 323
                      999888725667778999*************************************97559********************************** PP

  SQHop_cyclase_N 281 alekllvede 290
                      ++e+l v+d+
       CCG92847.1 324 DFESLEVDDQ 333
                      *****99886 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0066
  SQHop_cyclase_N  82 lALkllGdspdapalarArefilar 106
                      +AL   G++ +ap+l++A+++i +r
       CCG92847.1 355 VALAESGYERNAPQLKKAAHWIINR 379
                      799999****************986 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0028
  SQHop_cyclase_N  41 eddeeeeekiakylrsqqredGgWelyp 68 
                      +++ee ++++ +++ s q e+GgW+ + 
       CCG92847.1 430 IKKEEVMQRALRWVISFQCENGGWAAFD 457
                      4568889999999999999999999885 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 6.1e-07
  SQHop_cyclase_N   1 ikraaeallslqkpdGhWvgeLeanvti.taeyillrefl.geddeeeeekiakylrsqqredGgWel 66 
                      +++a ++l ++q++dG W+g    n +  t +++   + + +++++e + +++ +l+s q+edGgW+ 
       CCG92847.1 504 VQKAIRYLKETQESDGSWMGRWGVNYIYgTWQALRGLQAIgEDMNQEWILRARDWLESCQNEDGGWGE 571
                      57899999999999999999999998762556676667775888999999999999999999999975 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.011
  SQHop_cyclase_N  49 kiakylrsqqredGgWe 65 
                      +  kyl+++q +dG+W+
       CCG92847.1 612 RGIKYLCERQLSDGSWA 628
                      55789999999999996 PP

>> Prenyltrans  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.7e-07    0.0021       3      26 ..      42      65 ..      40      70 .. 0.83
   2 !   23.7   0.0     8e-09   2.9e-05       6      44 .]      91     129 ..      87     129 .. 0.92
   3 ?   -2.8   0.1       1.6   5.6e+03       2      12 ..     273     283 ..     272     285 .. 0.84
   4 ?    1.7   0.0     0.063   2.3e+02      27      44 .]     408     425 ..     391     425 .. 0.80
   5 !    9.7   0.1   0.00019      0.67       3      21 ..     436     454 ..     434     459 .. 0.90
   6 !   22.7   0.2   1.7e-08     6e-05       3      40 ..     504     540 ..     504     544 .. 0.88
   7 !   43.7   0.3   4.7e-15   1.7e-11       5      44 .]     554     603 ..     550     603 .. 0.95
   8 !    8.8   0.0   0.00036       1.3       6      22 ..     613     629 ..     608     631 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.7e-07
                 HHHHHHHHHHHSHTTS-BBSSTTS CS
  Prenyltrans  3 vekavefLlscQnedGGwggrpgs 26
                 ++ka ++Lls+Q edG+w g   +
   CCG92847.1 42 IKKAQRYLLSIQKEDGHWVGELFV 65
                 89****************986555 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 8e-09
                  HHHHHHHHSHTTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   6 avefLlscQnedGGwggrpgsesdtyytywalaaLallG 44 
                  +v  +l +Q +dGGw+  pg++s + +t  a+ aL+l+G
   CCG92847.1  91 LVKHILDRQLPDGGWNIYPGGPSEVNATVKAYFALKLAG 129
                  566699*******************************98 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.6
                  HHHHHHHHHHH CS
  Prenyltrans   2 dvekavefLls 12 
                   +eka  ++l 
   CCG92847.1 273 AIEKAEKWILE 283
                  68*******96 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.063
                  SBBHHHHHHHHHHHHHCT CS
  Prenyltrans  27 esdtyytywalaaLallG 44 
                  ++d+  t+++l+aL l++
   CCG92847.1 408 YPDVDDTLMVLLALRLID 425
                  899999*********985 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.00019
                  HHHHHHHHHHHSHTTS-BB CS
  Prenyltrans   3 vekavefLlscQnedGGwg 21 
                  +++a+++++s Q+e GGw+
   CCG92847.1 436 MQRALRWVISFQCENGGWA 454
                  789***************7 PP

  == domain 6  score: 22.7 bits;  conditional E-value: 1.7e-08
                  HHHHHHHHHHHSHTTS-BBSSTTSSBBHHHHHHHHHHH CS
  Prenyltrans   3 vekavefLlscQnedGGwggrpgsesdtyytywalaaL 40 
                  v+ka+++L+ +Q  dG+w gr+g+    y+t+ al +L
   CCG92847.1 504 VQKAIRYLKETQESDGSWMGRWGVN-YIYGTWQALRGL 540
                  68**********************9.999999887666 PP

  == domain 7  score: 43.7 bits;  conditional E-value: 4.7e-15
                  HHHHHHHHHSHTTS-BBSSTTS..........SBBHHHHHHHHHHHHHCT CS
  Prenyltrans   5 kavefLlscQnedGGwggrpgs..........esdtyytywalaaLallG 44 
                  +a+++L+scQnedGGwg+ p s          +s++++t+wa+++ +++G
   CCG92847.1 554 RARDWLESCQNEDGGWGETPASydnpqlkgkgPSTASQTAWAISGIMACG 603
                  699*****************************************988887 PP

  == domain 8  score: 8.8 bits;  conditional E-value: 0.00036
                  HHHHHHHHSHTTS-BBS CS
  Prenyltrans   6 avefLlscQnedGGwgg 22 
                   + +L+ +Q  dG+w++
   CCG92847.1 613 GIKYLCERQLSDGSWAE 629
                  689************97 PP

>> TED_complement  A-macroglobulin TED domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0069        25     114     135 ..      38      59 ..      22      65 .. 0.83
   2 ?    2.3   0.0     0.019        69     261     298 ..     411     454 ..     368     461 .. 0.73
   3 !    6.3   0.1    0.0012       4.3      63     135 ..     434     521 ..     422     535 .. 0.58
   4 !    9.5   0.0   0.00012      0.45     113     190 ..     547     619 ..     528     627 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0069
                     -HHHHHHHHHHHHTTB-TTS-B CS
  TED_complement 114 deeeiseslewLlseQkedGsF 135
                      e+ i+++ ++Lls QkedG++
      CCG92847.1  38 VEKTIKKAQRYLLSIQKEDGHW 59 
                     47899***************86 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.019
                     HHHHHHHHHHHHH......TTSCHHHHHHHHHHHHTHTSTSSSS CS
  TED_complement 261 vettaYaLLalls......ekdleladkivkWLtkqrnsaGGFs 298
                     v+ t  +LLal         k+ e+ ++ ++W+++ + ++GG++
      CCG92847.1 411 VDDTLMVLLALRLididdkIKKEEVMQRALRWVISFQCENGGWA 454
                     56666666665445566664455677777777777777777776 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0012
                     HHHHHHHHHHHTCBETTSEBBSSS..SS-BEHHHHH..HHHHHHHH......CHHHST.............--HHHHHHHHHHHHTTB-TTS-B CS
  TED_complement  63 eklekgyqrqlsykkadgsysafgkdssegstWLtA..fvlkvlaq......akefif.............ideeeiseslewLlseQkedGsF 135
                     e ++ ++  ++s++ ++g+++af   ++ +  WL    f             +    +              +e+ +++++++L ++Q+ dGs+
      CCG92847.1 434 EVMQRALRWVISFQCENGGWAAFD--KNVYKKWLEDipFADHNAILdppcsdI----TaralelfgkmgirKNEKFVQKAIRYLKETQESDGSW 521
                     456666666667777777777777..556666765311222211112233331....1233344445554467777777777877777777776 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.00012
                     --HHHHHHHHHHHHTTB-TTS-B--SS-SS-T.TCSSSTHCHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHH CS
  TED_complement 113 ideeeiseslewLlseQkedGsFkeegsllnr.kmkggvekevtLtAyvliaLleakeilelkkkvelsiskAleyLee 190
                     +++e i ++  wL s+Q+edG + e+    ++ ++kg    +++ tA+++  ++   +i+      ++si++ ++yL e
      CCG92847.1 547 MNQEWILRARDWLESCQNEDGGWGETPASYDNpQLKGKGPSTASQTAWAISGIMACGDIF------RPSITRGIKYLCE 619
                     8899999****************99766555559***99999******999999885554......6777777777766 PP

>> Pec_lyase  Pectic acid lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       0.3   1.1e+03      59      81 ..      37      59 ..      33      61 .. 0.87
   2 ?    0.0   0.0      0.12   4.2e+02      65      86 ..      89     109 ..      77     116 .. 0.80
   3 !    7.6   0.0   0.00057         2      57     157 ..     429     527 ..     410     538 .. 0.70
   4 ?   -2.7   0.0      0.78   2.8e+03      61      82 ..     549     570 ..     541     573 .. 0.82
   5 !    4.3   0.0    0.0058        21      60      85 ..     606     631 ..     601     648 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.3
   Pec_lyase 59 kykdavrkglefllkaqYsnGgw 81
                k +++++k+  +ll+ q + G w
  CCG92847.1 37 KVEKTIKKAQRYLLSIQKEDGHW 59
                66778999*************99 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.12
   Pec_lyase  65 rkglefllkaqYsnGgwpqfyP 86 
                 ++ ++++l+ q + Ggw  +yP
  CCG92847.1  89 KRLVKHILDRQLPDGGWN-IYP 109
                 56799************6.555 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00057
   Pec_lyase  57 dekykdavrkglefllkaqYsnGgwpqfyPl.kkgYsehitfnDdamvrvlnl.lekiaekkapyelldksqrkrlkkavekGidciLktqvkqngklt 153
                 + k ++ ++++l ++++ q +nGgw  f  +  k++ e i f D+  +  l    ++i+ +   +el+ k   ++ +k v+k i ++ +tq   +    
  CCG92847.1 429 KIKKEEVMQRALRWVISFQCENGGWAAFDKNvYKKWLEDIPFADHNAI--LDPpCSDITAR--ALELFGKMGIRKNEKFVQKAIRYLKETQESDGSWMG 523
                 5566778999****************9965415668899999998754..33213333332..357777777777777778888777777777766666 PP

   Pec_lyase 154 vWca 157
                  W+ 
  CCG92847.1 524 RWGV 527
                 6665 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 0.78
   Pec_lyase  61 kdavrkglefllkaqYsnGgwp 82 
                 ++ ++++ ++l + q + Ggw 
  CCG92847.1 549 QEWILRARDWLESCQNEDGGWG 570
                 56688999*************5 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.0058
   Pec_lyase  60 ykdavrkglefllkaqYsnGgwpqfy 85 
                 ++ ++ +g+++l + q s G+w   +
  CCG92847.1 606 FRPSITRGIKYLCERQLSDGSWAEEF 631
                 78999*****************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 4129.11
//
Query:       CCG92848.1  [L=318]
Description: Dienelactone hydrolase or related enzyme (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-36  126.4   0.0    1.4e-36  126.1   0.0    1.1  1  DLH            Dienelactone hydrolase family
    8.1e-07   29.2   0.1    2.7e-06   27.4   0.0    1.8  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
    0.00057   19.2   0.0        0.1   11.8   0.0    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.014   14.9   0.0       0.79    9.2   0.0    2.2  2  Peptidase_S9   Prolyl oligopeptidase family
      0.075   13.6   0.1       0.11   13.1   0.1    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   0.0     4e-40   1.4e-36       3     215 ..      94     298 ..      93     300 .. 0.94

  Alignments for each domain:
  == domain 1  score: 126.1 bits;  conditional E-value: 4e-40
         DLH   3 aylatpknakkpvvvviqeifGvndnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevstkkvg 101
                 +yl +p++ +k +vv ++ i+G+ + ik  ++ + + GYval+ dl+ + +  p+d   aa++    v+   ee  l+ + aav++l++ p++ t kvg
  CCG92848.1  94 GYLSIPDQEPKGGVVLVPGIWGLSQGIKFLADHFSKDGYVALVVDLFNGIV--PKDSSSAADLR-RFVR---EESALNVIAAAVRFLHESPRFHTTKVG 186
                 7999**********************************************9..77777777766.3333...457888889****************** PP

         DLH 102 vvGfCmGGalalllaaevpevdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsresynee 200
                 vvG+ +GG+ +l+ a +v+ ++a+v++YG +++ e  +  k+ +p+  +++e+D+ + ++++ ++ +a+++++++l + +++ a+H+Fa + +++y++ 
  CCG92848.1 187 VVGWDIGGEYTLEAAINVKGINAVVIYYG-EVNLEKRKLSKLRVPVCYFYAEKDQTVSKEKIIHFVNAMEEEKKPLSFYSFE-AQHGFADPASANYDPT 283
                 *****************************.99*************************************************9.**************** PP

         DLH 201 aaedawervlelfkq 215
                  ae aw+  ++++++
  CCG92848.1 284 TAEAAWNISINFLEK 298
                 ***********9986 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   7.6e-10   2.7e-06       8      66 ..     169     226 ..     163     262 .. 0.75
   2 ?   -1.3   0.0      0.47   1.7e+03     194     211 ..     283     300 ..     273     302 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 7.6e-10
                 HHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSSEEEEEEES--SB--SSEEEET CS
      BAAT_C   8 eainyllrhpkvkkdkigllGiSkGgelalllasflkkisavvlingsavvvegklvyk 66 
                  a+++l ++p+ +  k+g++G   Gge++l  a+  k i+avv++ g +   e+ ++ k
  CCG92848.1 169 AAVRFLHESPRFHTTKVGVVGWDIGGEYTLEAAINVKGINAVVIYYGEVNL-EKRKLSK 226
                 699******************************************986544.4444444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHHHHHHH- CS
      BAAT_C 194 kAqedsWkkilkFlkkhl 211
                 + +e +W+  ++Fl+k  
  CCG92848.1 283 TTAEAAWNISINFLEKEF 300
                 567899*********975 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0032        11       1      38 [.     101     138 ..     101     142 .. 0.94
   2 !   11.8   0.0   2.8e-05       0.1     185     227 ..     222     264 ..     215     272 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0032
  Hydrolase_4   1 aepkavvvlvHGlaehsgryaelaeaLaaqGfavyalD 38 
                  +epk+ vvlv+G+   s+  + la+++ + G+  + +D
   CCG92848.1 101 QEPKGGVVLVPGIWGLSQGIKFLADHFSKDGYVALVVD 138
                  689*****************************998888 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.8e-05
  Hydrolase_4 185 eraakitlPllllhGeaDkvvdpeasrelyerlgskdktlkly 227
                  ++ +k+++P+  +++e+D+ v++e+  ++++++  ++k l  y
   CCG92848.1 222 RKLSKLRVPVCYFYAEKDQTVSKEKIIHFVNAMEEEKKPLSFY 264
                  5678999****************************99999888 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.011        40      48      81 ..     167     200 ..     127     218 .. 0.83
   2 ?    9.2   0.0   0.00022      0.79     142     204 ..     227     289 ..     213     293 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.011
                   HHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHH CS
  Peptidase_S9  48 fiaaaealakegyvdserlaitGgSyGGyltgaa 81 
                   + aa+++l +     ++++++ G+  GG  t+ a
    CCG92848.1 167 IAAAVRFLHESPRFHTTKVGVVGWDIGGEYTLEA 200
                   3466666766669***************666544 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00022
                   ---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHH.HHHHHHHHH CS
  Peptidase_S9 142 aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakv.eelarllaF 204
                     +p++ + +++D+ v  ++ +++v+a+++++k++ +  f +++Hg+++p + + + +  ++a+
    CCG92848.1 227 LRVPVCYFYAEKDQTVSKEKIIHFVNAMEEEKKPLSFYSF-EAQHGFADPASANyDPTTAEAAW 289
                   678999999*********************9999887665.799******99997888888887 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1     3e-05      0.11       1      87 [.     107     202 ..     107     231 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3e-05
                    EEEE--GC.....G...C.HHHHHHHHCCT.CEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT...................TTSEEEEEETC CS
  Abhydrolase_6   1 vlllHGagssassW...l.vapLaallaag.vhvlapDlpGhGrsdpppldledladlaalldelaa.................gggpvvlvGHSl 74 
                    v+l++G       W   +   +La  ++++ +  l++Dl  +G     p d + +adl+++++e+ a                  + +v +vG++ 
     CCG92848.1 107 VVLVPGI------WglsQgIKFLADHFSKDgYVALVVDL-FNG---IVPKDSSSAADLRRFVREESAlnviaaavrflhesprfHTTKVGVVGWDI 192
                    89****4......65332455775555666766678***.667...3333333347777777777666666667777777999999999******* PP

                    HHHHHHHHHHCC. CS
  Abhydrolase_6  75 GGalalaaaplal 87 
                    GG + l+   +a+
     CCG92848.1 193 GGEYTLE---AAI 202
                    ******9...773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2153.92
//
Query:       CCG92849.1  [L=418]
Description: Glutamate dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-63  212.6   0.0    9.6e-63  212.1   0.0    1.2  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
    5.7e-57  191.2   0.0    8.3e-57  190.7   0.0    1.3  1  ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation 
  ------ inclusion threshold ------
       0.28    8.6   0.0       0.42    8.0   0.0    1.1  1  Bac_GDH          Bacterial NAD-glutamate dehydrogenase


Domain annotation for each model (and alignments):
>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.1   0.0   1.6e-66   9.6e-63       1     243 []     183     415 ..     183     415 .. 0.97

  Alignments for each domain:
  == domain 1  score: 212.1 bits;  conditional E-value: 1.6e-66
                    T--TTTTTHHHHHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE-HHHHHHHHHCSSSSTTHSHHS CS
  ELFV_dehydrog   1 GGsldrpeaTglGvvyyveemlkklkldslegkrvaisGsGnvgsyaallltelgakvvavsDssGviydpeGldieellelkeerksvkeykkss 96 
                    GGsl+r eaTg+Gv++ v+++ + lk+   +  r++++G+Gnvgs+ ++ l e+ga  ++vsD sG++y+p+G++ + l+++ke++++++ ++   
     CCG92849.1 183 GGSLGRREATGRGVAFLVKKVSEILKMP--NPLRIIVQGFGNVGSVSVRQLVEQGAVLIGVSDLSGALYNPKGINCAHLCAYKEKTGMLAGFP--- 273
                    9***********************9998..7788***********************************************************... PP

                    TSTSEEESHHSHHHHSS-SEEEE-SSTTSB-HHHHTHTHHTT-SEEE-SSSS-B-HHHHHHHHHTT.-EEE-HHHHTTHHHHHHHHHHHHHHCT-- CS
  ELFV_dehydrog  97 ekkaeyieneeellelkvdilvPcAtqneideenakalikngvklvvEgANlpttqeAkeileeag.vlvvpdkaaNaGGVtvSslEmlqnlarls 191
                      +a+ i++  +ll  ++d+l+P+A + +i+++na+ +++  +++++EgAN+ptt+eA++ilee++ ++v+pd+++N+GGV+vS++E++q++++++
     CCG92849.1 274 --EADPIDGF-DLLCQRCDVLIPAAKERVITKKNAE-KLQ--CRILAEGANGPTTPEADKILEERKdIFVIPDILCNSGGVIVSYFEWVQDMQSYF 363
                    ..4699***7.99999********************.777..*********************9887***************************** PP

                    --HHHHHHHHHHHHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHHCT CS
  ELFV_dehydrog 192 wteeevdeklkkimkeifkavveeaeeykqelvkganiagfekvaeamkaqG 243
                    w+e ev + l +i ++  +++++  +e+k++ + +a  +g++kvaea++ +G
     CCG92849.1 364 WSEREVFDALYRILSATLHSIMKFSHERKVSTRIAALSLGIKKVAEAKEMRG 415
                    ************************************************9998 PP

>> ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.7   0.0   1.4e-60   8.3e-57       1     130 []      37     165 ..      37     165 .. 0.99

  Alignments for each domain:
  == domain 1  score: 190.7 bits;  conditional E-value: 1.4e-60
                      -SEEEEEEEEEE-TTSBEEEEEEEEEEEE-TTSSEEEEEEEETT--HHHHHHHHHHHHHHHHHTTSS-EEEEEEEES-GGGS-HHHHHHHHHHH CS
  ELFV_dehydrog_N   1 pervlqvtvpvkrdnGelevikgyraqhssalgPakGGiRfhpsvnldevkaLaalmtyKnalvdlpfGGakggvkidpkklseeeleritrrf 94 
                      p+r l+v++pvk+dnG+++++ gyr+qh+ algP+kGGiRf p+v+l e+ aLa++m++K+alv+lpfGGakggv ++p+++s++ele +trr+
       CCG92849.1  37 PQRSLTVSFPVKMDNGTIRMFVGYRVQHHLALGPTKGGIRFDPDVTLGEISALAMWMSWKCALVGLPFGGAKGGVACKPSEMSKKELEGLTRRY 130
                      7899****************************************************************************************** PP

                      HHHHG.GG-BTTTEEEEBBTTB-HHHHHHHHHHHHH CS
  ELFV_dehydrog_N  95 vrelakkfiGpgiDvpApDvgtgaremawladeykk 130
                      ++el+ +fiGp++D+pApD+gt+++ maw++d+y++
       CCG92849.1 131 TQELI-PFIGPQKDIPAPDIGTNEQIMAWMMDTYSM 165
                      *****.****************************97 PP

>> Bac_GDH  Bacterial NAD-glutamate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0     7e-05      0.42    1050    1099 ..     304     354 ..     298     355 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 7e-05
     Bac_GDH 1050 ngkelrakvvgEGgNLGltQlg.RiEyalkggrintDaiDNsaGVdcSDhE 1099
                  n+++l++++++EG+N   t  + +i   +k++ +  D + Ns+GV +S  E
  CCG92849.1  304 NAEKLQCRILAEGANGPTTPEAdKILEERKDIFVIPDILCNSGGVIVSYFE 354 
                  899************99997664899999****************999655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2925.03
//
Query:       CCG92850.1  [L=201]
Description: bifunctional protein:(Includes: para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase); anthranilate synthase component II) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-53  180.2   0.0    4.1e-53  180.0   0.0    1.0  1  GATase         Glutamine amidotransferase class-I
      2e-08   34.2   0.6    5.5e-08   32.8   0.6    1.6  1  Peptidase_C26  Peptidase C26
  ------ inclusion threshold ------
       0.12   11.9   0.0       0.16   11.5   0.0    1.2  1  Peripla_BP_2   Periplasmic binding protein


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.0   0.0   6.9e-57   4.1e-53       1     187 [.      11     193 ..      11     195 .. 0.97

  Alignments for each domain:
  == domain 1  score: 180.0 bits;  conditional E-value: 6.9e-57
                 EEEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECE CS
      GATase   1 lliDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekek 98 
                 l+iDnyds+t+nlv+++ elg++ +v+++d+   e   ++ +p+ i++s+Gp  p+ ++ + e+i ++    iPiLG+CLG+Q++++ +g+kvv++k k
  CCG92850.1  11 LVIDNYDSFTYNLVQYFGELGIEPTVYRNDQISVEAV-AALSPQFIVISPGPKGPAdAGISCEIIDRLGP-FIPILGVCLGHQCIGHVYGAKVVRAK-K 106
                 58****************************9888886.589**************************999.**************************.9 PP

                 EEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHH CS
      GATase  99 ehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnfl 187
                  +hg+t+ +++++++++  l+n+++++++H++ v++ e+ p++l++ta++edd e+m++ ++k+p++gvQFHPEs++t eg+++l+nfl
  CCG92850.1 107 LMHGKTSFIHHNGEGIFWSLPNPFEATRYHSLIVEK-ESIPSCLHITAWTEDD-EVMGLSHEKYPVFGVQFHPESILTREGKRILKNFL 193
                 ***********************************8.99***********999.8********************************96 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.6   9.3e-12   5.5e-08     106     216 .]      81     178 ..      73     178 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 9.3e-12
  Peptidase_C26 106 vPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaike..laeelrveAvaeDgviEai 199
                    +Pilg+C+G+q +  ++G +++++ +    l+ h       ++  ++ + ++++ +l +   +e + +H+  +++  + + l+++A++eD+ +  +
     CCG92850.1  81 IPILGVCLGHQCIGHVYGAKVVRAKK----LM-H------GKTSFIHHNGEGIFWSLPN--PFEATRYHSLIVEKesIPSCLHITAWTEDDEVMGL 163
                    8************6666655554444....22.2......34456888999***99988..99**********9877999**********988777 PP

  Peptidase_C26 200 eseeakafvlgvQwHPE 216
                    ++e+  ++v+gvQ+HPE
     CCG92850.1 164 SHEK--YPVFGVQFHPE 178
                    7777..88********9 PP

>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.6e-05      0.16      42      69 ..      34      61 ..      12      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.6e-05
                  -BSBESSSB-HHHHHHH--SEEEE-GGG CS
  Peripla_BP_2 42 vevgadgeidvEklaalkPDlvilskgl 69
                  ++v  +++i+vE++aal P  ++ s+g 
    CCG92850.1 34 PTVYRNDQISVEAVAALSPQFIVISPGP 61
                  789999*****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1669.89
//
Query:       CCG92851.1  [L=495]
Description: Anthranilate/para-aminobenzoate synthase component I [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-90  303.5   0.0      3e-90  302.3   0.0    1.6  2  Chorismate_bind  chorismate binding enzyme
    9.4e-37  126.4   0.0    9.7e-36  123.1   0.0    2.5  3  Anth_synt_I_N    Anthranilate synthase component I, N termina


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.28   2.5e+03      47      59 ..      37      49 ..       7      81 .. 0.49
   2 !  302.3   0.0   3.4e-94     3e-90       2     258 .]     226     480 ..     225     480 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.28
                     HHCTBSSSEEEEE CS
  Chorismate_bind 47 lrarnpapysfll 59
                     l+  + + ysfl+
       CCG92851.1 37 LKISYASRYSFLF 49
                     2223445555555 PP

  == domain 2  score: 302.3 bits;  conditional E-value: 3.4e-94
                      HCHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETTSEEEEECEEEEEEHS CS
  Chorismate_bind   2 redYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsellgaSPElllkveggrrietepiaGTrarg 95 
                      +e+Y ++ ek++e+iragd+++vv+s+r+ ++  ++ dp+++yralr  np+py+f+l+++d++l+g+SPE+ ++++++ ++ ++piaGTr+rg
       CCG92851.1 226 KEEYISMTEKMQEYIRAGDIFQVVPSQRWHTP--CKRDPIDVYRALRLINPSPYMFCLKFKDFSLVGSSPEVHVRFDKR-KVYVRPIAGTRPRG 316
                      799*****************************..888****************************************55.*************8 PP

                      SS.HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESHH CS
  Chorismate_bind  96 kt.peedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkk 188
                      ++ pee+++  eel++d+Ke+aEh m+vdl+rnd+g+v+ ++s+ v+el+ +e+ys+v+h+vs +eg ++e++s++d+l+a+fP+g+vtGaPk 
       CCG92851.1 317 QNsPEEEAKIVEELINDPKEKAEHIMLVDLARNDIGRVCAFNSIIVKELMVIEKYSHVIHMVSSVEGIAREGISPFDVLEATFPAGTVTGAPKV 410
                      7537889999************************************************************************************ PP

                      HHHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 189 rameiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      ram+ii +lE++ Rg+YaG+vg+l+++g ++ +++IRt+++k++ ++l+aG+G+vadS+p  Ey E  +K
       CCG92851.1 411 RAMQIISQLEPTCRGPYAGIVGCLSFSGYLDSCIAIRTILIKNGYAYLQAGGGLVADSTPIGEYLESSNK 480
                      ******************************************************************9987 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.1   0.0   1.1e-39   9.7e-36       1     142 []      28     171 ..      28     171 .. 0.92
   2 ?   -0.1   0.0      0.11   9.7e+02      32      73 ..     285     330 ..     260     346 .. 0.66
   3 ?   -2.6   0.0      0.64   5.7e+03      36      75 ..     360     400 ..     336     432 .. 0.65

  Alignments for each domain:
  == domain 1  score: 123.1 bits;  conditional E-value: 1.1e-39
  Anth_synt_I_N   1 ddltplsvylklaeee.hkflLeSaenegge.grySfigldpflelkskngevevegpegeeleeee...pldalrellerfrsaedseptelpfv 91 
                    d +tp+s+ylk++  + ++fl+eSa+   g+ gryS++g+dp+  + + ++++++e+++g++ e  +   pl+ l++++e +++ +   p+ + f 
     CCG92851.1  28 DLDTPVSAYLKISYASrYSFLFESAD--RGKfGRYSYLGADPYFIISAYGRKITIEYRDGKKVEFWTdsnPLNELKKMMEPYKAFP--IPQLPDFF 119
                    679*********99889********8..6666*************************8888887666689*************443..488999** PP

  Anth_synt_I_N  92 gGlvGylgYDlvreie.klpksakddlnlpdarlilydtlivfDhkerrlyl 142
                    gGlvGylgY++v+ +e  +p+++kddl +pd++++l dtli+fDh+err++l
     CCG92851.1 120 GGLVGYLGYEMVHFFEpSVPRARKDDLGVPDLCFLLADTLIIFDHQERRMFL 171
                    *************************************************986 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.11
  Anth_synt_I_N  32 rySfigldpflelkskngeveveg.....pegeeleeeepldalrel 73 
                     +S++g +p   ++ ++++v v       p g+++ eee  ++++el
     CCG92851.1 285 DFSLVGSSPEVHVRFDKRKVYVRPiagtrPRGQNSPEEE-AKIVEEL 330
                    499999999888888888888777666653333333333.3333344 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.64
  Anth_synt_I_N  36 igldpflelkskngeveveg.pegeeleeeepldalrelle 75 
                    i++++ ++++  ++ + +    eg ++e  +p+d+l++++ 
     CCG92851.1 360 IIVKELMVIEKYSHVIHMVSsVEGIAREGISPFDVLEATFP 400
                    55555555554444444433233344444448888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 3104.54
//
Query:       CCG92852.1  [L=193]
Description: Periplasmic protein TonB [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-22   78.6   0.0    6.1e-22   77.9   0.0    1.4  1  TonB_C    Gram-negative bacterial TonB protein C-terminal
  ------ inclusion threshold ------
      0.084   13.1   0.0       0.19   12.0   0.0    1.6  1  TonB_2    TonB C terminal


Domain annotation for each model (and alignments):
>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   6.8e-26   6.1e-22       1      79 []     113     192 ..     113     192 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 6.8e-26
                 ------HHHHHHTEEEEEEEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT.-EE-TT--EEE......EEEEEEEE CS
      TonB_C   1 pepeYPeeArrrgieGtvtveftidpdGnvtnvkvvkssgseiLdkaAleavrk.wkfkpapkngkpvtvkitvpirFkl 79 
                 p+p+YP++A+++g +G v++++ ++++G +t+v++ kssg+++Ld+aA ++v+k w+fkp++  g p++v++++pirFk+
  CCG92852.1 113 PAPAYPAAAKAAGHQGLVILRVHVSSSGYPTSVTIGKSSGYPELDQAAENTVKKfWRFKPPTMLGLPIDVDVDIPIRFKI 192
                 589**********************************************************999**************96 PP

>> TonB_2  TonB C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.1e-05      0.19      28      68 ..     130     170 ..     114     184 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
      TonB_2  28 avveitidpdGeivsvrlvksSgneafDkavkrAiekaspl 68 
                 ++ +++++ +G   sv + ksSg +++D+a+++ ++k  ++
  CCG92852.1 130 VILRVHVSSSGYPTSVTIGKSSGYPELDQAAENTVKKFWRF 170
                 67899999****55*******************99975555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1446.56
//
Query:       CCG92853.1  [L=148]
Description: Biopolymer transport protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-29  101.2   2.1    5.4e-29  101.0   2.1    1.0  1  ExbD      Biopolymer transport protein ExbD/TolR
     0.0022   18.2   0.1     0.0028   17.9   0.1    1.1  1  DUF5025   Domain of unknown function (DUF5025)


Domain annotation for each model (and alignments):
>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   2.1     6e-33   5.4e-29       3     129 ..       9     134 ..       7     135 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 6e-33
        ExbD   3 resaeinltpmiDvvflLLifFlv.taklkkpeplevdlPsssstqkeveekelirisisadgsiyldkkavsveelaqklkerkakppdkltvaikad 100
                 ++ ++++++p+iDv+f+LL  F++ + +++k+e+++++lP+s++    + ++++i++++ ++g++ +dk++v+ +el  kl+++k+++pd+ ++ + ++
  CCG92853.1   9 KHRPRLEIIPFIDVMFFLLATFMIvSLTMVKNETIQIKLPKSTTAV-SQPPPDQITVKVLEEGNFLFDKEKVLSQELTSKLNQIKTSNPDP-KIFVTGE 105
                 789********************999********************.5*******************************************.******* PP

        ExbD 101 kdvsygklvevldtlkkagiekvslvttl 129
                  ++s++ +v+++d+++k gi+k+++ tt+
  CCG92853.1 106 PNASFELVVKIIDEARKIGINKIAIQTTK 134
                 **************************985 PP

>> DUF5025  Domain of unknown function (DUF5025)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   3.1e-07    0.0028      40     133 ..      38     128 ..      21     132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.1e-07
     DUF5025  40 idlelftisvaldakksntetdsklriqitdikkgeyeltksklykedfesyirlitddgeedskvyyipekekpFkvevdevdypessvvpvi 133
                 ++ e   i+ +++++  ++ + +  +i +  +++g ++ +k k++ ++++s    i++ +++d k+ ++ e++ +F++ v+ +d +++++++ i
  CCG92853.1  38 VKNETIQIKLPKSTTAVSQPPPD--QITVKVLEEGNFLFDKEKVLSQELTSKLNQIKT-SNPDPKIFVTGEPNASFELVVKIIDEARKIGINKI 128
                 55666677888888888888888..55555689*********************9999.9**********************999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1045.50
//
Query:       CCG92854.1  [L=213]
Description: Biopolymer transport protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-23   81.6   2.3    5.9e-23   81.0   2.3    1.3  1  MotA_ExbB        MotA/TolQ/ExbB proton channel family
  ------ inclusion threshold ------
       0.14   11.9   0.8       0.45   10.3   0.6    2.0  2  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l
       0.21   10.3   2.5       0.14   10.9   1.3    1.3  1  DUF2207          Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   2.3   9.8e-27   5.9e-23       7     126 ..      72     186 ..      66     187 .. 0.90

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 9.8e-27
                 HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS.SGGCTHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB   7 drilkaglqeklvdgaepeelrraleealsreeerlekglsilatigslaPllGLlGTVlGlieafqaladagsa.dlakvapgiaeALiaTalGlvvA 104
                 +++l +gl+      +++    +a+ ea+s+++e+ ++gl il+t+++l PllGLlGTV+G+++af+ +++ + a + a++++g+ae Lia  +Gl++A
  CCG92854.1  72 AQVLVEGLR------HRNSMPVDAMIEAASAQIEKYSRGLVILDTAVTLGPLLGLLGTVTGMMHAFSIVGTGEIAgKQAAITGGVAESLIAVSFGLAIA 164
                 566666666......56777778999999999**************************************87777889********************* PP

                 HHHHHHHHHHHHHHHHHHHHHX CS
   MotA_ExbB 105 ipavlaynklkrkverlvlele 126
                 i+a++  n++++++e++ +e+e
  CCG92854.1 165 IIAIIPLNFFNARTEKVRREIE 186
                 ***************9998876 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.2   7.3e+03       9      27 ..      60      78 ..      56      81 .. 0.69
   2 ?   10.3   0.6   7.6e-05      0.45      16      62 ..     137     185 ..     123     195 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.2
  Phage_holin_2_4  9 laaagnkatggGavvsfaG 27
                       a+g+k+ ++ a v + G
       CCG92854.1 60 AIAIGEKSKYVVAQVLVEG 78
                     3478888888888776655 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 7.6e-05
  Phage_holin_2_4  16 atggGavvsfaGflasselialvGlavAliGlL.vnWyYkr.eanRRaa 62 
                        + G   ++ G +a s ++  +Gla+A+i ++ +n++  r e+ RR+ 
       CCG92854.1 137 GEIAGKQAAITGGVAESLIAVSFGLAIAIIAIIpLNFFNARtEKVRREI 185
                      557899999******9999999********9874566654414455554 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.3   2.3e-05      0.14     381     445 ..     109     185 ..      43     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.3e-05
     DUF2207 381 kklsalglgliilglilillallllvll............lvfllilllillliaiivlllfsrllgrrteeGaell 445
                  +  +lg +l++lg++ +++ ++++v++             v  +++++ ++l+++i+++++  ++ +rte+ +++ 
  CCG92854.1 109 DTAVTLGPLLGLLGTVTGMMHAFSIVGTgeiagkqaaitgGVAESLIAVSFGLAIAIIAIIPLNFFNARTEKVRREI 185
                 45566677777777777777777777779999********99999999999999999999999********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1608.13
//
Query:       CCG92855.1  [L=268]
Description: HAD superfamily hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-18   68.1   0.0    5.9e-12   45.9   0.0    2.1  2  Hydrolase_3  haloacid dehalogenase-like hydrolase
    1.5e-12   47.6   0.0    5.7e-12   45.7   0.0    1.8  1  S6PP         Sucrose-6F-phosphate phosphohydrolase
    0.00079   19.9   0.1      0.038   14.4   0.0    2.5  2  HAD          haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.017   15.4   0.0       0.24   11.7   0.0    2.1  2  Hydrolase    haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   3.2e-08   0.00014       2     119 ..       8     135 ..       7     157 .. 0.74
   2 !   45.9   0.0   1.3e-15   5.9e-12     152     241 ..     141     233 ..     135     251 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3.2e-08
                  EEEIIIIIS-..TTS---HHHHHHHHHHHHTTSEE.EEE-SS-HHHHHHHHHHCCCC..........SEEEEGGGTEEECTTTEEEEE--B-HHHHHH CS
  Hydrolase_3   2 alDlDGTLln..sdkkisektkeaikklkekgikv.viATGRslravlpvleelgld..........lpvialNGaliddekgkilykstiskedvke 86 
                  ++D DGTLl+  ++ ki  +  e ++k k+++  v vi TGRs +++ + l+ l++             +  + G  i + +++   k + s++ + +
   CCG92855.1   8 CTDFDGTLLSvgEERKIATEFYELLHKKKKQDTFVwVINTGRSWESLFEELNRLQIPflpdwvvlyeKEIFKVQGLQI-FPHEEWNLKCRNSHKILFD 104
                  79******99778888***********99998876589*****************98888877777777777999999.6666666677777778888 PP

                  HHHHHHHTTCEEEEEESSEEEESTT.....THHHHHH CS
  Hydrolase_3  87 iikllkennveillytedkvyvlnk....eksekkkk 119
                   i ++ e+  ++l+ +++ ++ +++    e       
   CCG92855.1 105 SIGFFFEELANYLILHTKATIHSSSwspiE------V 135
                  888888877777777777777777733331......2 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 1.3e-15
                  HHHHHHHHHHHHHCTTTE.EEEEESTTEEEEEETT-SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHH..HSSEEEEETTS-HHHHHHSSE CS
  Hydrolase_3 152 ekldelekelksklnkll.titssskgyleimpkgvsKgtalkklakelnisleeviafGDgeNDieMLe..aaglgvAmgnaseevkkaAdy 241
                  ++ d++  ++++kl++    +++ +  y+ + +k+ +Kg+alk+++  l+is+++ +a GD  ND++MLe   a +  + +na +evk++  +
   CCG92855.1 141 QEADQISLYIDQKLQNMPfLTYHRNFVYFRFAHKDFHKGSALKQIQRLLGISPKNSMACGDHFNDLPMLEiqLASHLACPANAVKEVKEKVIK 233
                  566777777777776643344555566788**************************************9733589999**********98755 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   1.3e-15   5.7e-12       2     242 ..       4     251 ..       3     254 .. 0.78

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 1.3e-15
                 SEEEEE-TBTTTB...S-HHHHHHHHHHHH..GGGGGEEEEEE-SS-HHHHHHHHHHHT--.--SEEEETTTTEEEE....TTEE-HHHHHHHHTT--H CS
        S6PP   2 klllvsdLDntlv..dgdnealarlnelle.aeerkdvllvfaTGRsldsakellkeknll.kPdvlitsvGteiyy..geelvpdkaweeildekwdr 94 
                 ++l+ +d D+tl+   ++++   +++ell+ +++++ ++ v++TGRs +s  e l+  +++  Pd+++     ei +  g +  p ++w+   ++  + 
  CCG92855.1   4 PFLFCTDFDGTLLsvGEERKIATEFYELLHkKKKQDTFVWVINTGRSWESLFEELNRLQIPfLPDWVVLY-EKEIFKvqGLQIFPHEEWNLKCRNSHKI 101
                 57999********97777777889******55666667889*******************9459998875.68998844558899****9988887776 PP

                 ..HHHHHHHHT-TT.EEE--GGG-BTTBEEEE.E-TTS-THHHHHHHHHHHTTTS-EEEE..EETTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEE CS
        S6PP  95 ..qavvealaklpe.LtlQpeeeqrehKvSyf.vdkekaaevlkeleqlLekreldvkvi..yssgkdlDvlPkraskgeAlryLakkleleleqilvc 187
                   + +    ++l++ L l ++   ++  +S   v+++  +e  ++++ ++ ++ +++ ++   ++  ++    k+  kg+Al+ +++ l++ +++ + c
  CCG92855.1 102 lfDSIGFFFEELANyLILHTKATIHSSSWSPIeVEASSNQE-ADQISLYIDQKLQNMPFLtyHRNFVYFRFAHKDFHKGSALKQIQRLLGISPKNSMAC 199
                 66888888888888677777666665555544356666666.9999999999888887773355566677889999*********************** PP

                 E-SGGGHHHHTSSSEEEE-..TT--HHHHHHHHHH--TTE..EE-SS-THHHHHHHH CS
        S6PP 188 GdsgnDeellignvlgVvV..gnaqeellqwllenakeneriylaeercaaGilegl 242
                 Gd  nD  +l+ + ++     +na +e     +e+  ++   y+a+++   Gi e+l
  CCG92855.1 200 GDHFNDLPMLEIQLASHLAcpANAVKE----VKEKVIKQG-GYVAKKEASLGITEAL 251
                 **********66666654401666666....555554444.7*************98 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2     0.026   1.2e+02       3      12 ..       9      18 ..       7      74 .. 0.76
   2 !   14.4   0.0   8.5e-06     0.038     144     188 .]     172     210 ..     148     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.026
         HAD  3 fDfDgTLldg 12
                 DfDgTLl  
  CCG92855.1  9 TDFDGTLLSV 18
                69*****976 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 8.5e-06
         HAD 144 legkpvrgegkvaalrewlaaegegidleevvayGDspsDlpllr 188
                  + ++ +g    +al++   ++  gi++++++a+GD+ +Dlp+l+
  CCG92855.1 172 AHKDFHKG----SALKQ--IQRLLGISPKNSMACGDHFNDLPMLE 210
                 55666777....99999..999*********************96 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.074   3.3e+02       4      23 ..       7      29 ..       6      54 .. 0.71
   2 ?   11.7   0.0   5.4e-05      0.24     176     207 ..     179     210 ..     166     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.074
                EEEESBTTTB.CHH..HHHHHHH CS
                xxxxxxxxxx.xxx..xxxxxxx RF
   Hydrolase  4 vvfDkdGTLt.tge..psvedvi 23
                ++ D+dGTL+  ge  +  ++++
  CCG92855.1  7 FCTDFDGTLLsVGEerKIATEFY 29
                678******96444434444444 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 5.4e-05
                 HHHHHHHHHHHTSTGGGEEEEESSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 176 pegkvaaireLqgkpeevamVGDgvnDaaala 207
                  ++++++ r L+++p++ ++ GD +nD+++l+
  CCG92855.1 179 GSALKQIQRLLGISPKNSMACGDHFNDLPMLE 210
                 566777888889******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 1826.40
//
Query:       CCG92856.1  [L=400]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-20   72.2   0.0    5.5e-20   71.6   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
    4.3e-19   69.3   0.1      8e-19   68.4   0.1    1.4  1  Glyco_trans_1_4  Glycosyl transferases group 1
    1.4e-11   44.7   0.0    2.4e-11   44.0   0.0    1.4  1  Glyco_transf_4   Glycosyltransferase Family 4
    0.00081   19.7   0.0     0.0017   18.7   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1
     0.0092   16.4   0.0      0.016   15.7   0.0    1.4  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
  ------ inclusion threshold ------
       0.19   11.5   0.0       0.37   10.6   0.0    1.4  1  Glyco_hydro_19   Chitinase class I


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   1.8e-23   5.5e-20      18     171 ..     207     357 ..     191     358 .. 0.88

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 1.8e-23
                      EEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS-HHHHH CS
  Glycos_transf_1  18 ilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEgfGivllE 111
                       l+vg+  k Kg+ ++   +a+ kk+    ++l+++G g++e+  +    + ++ ++v f+g vs e++e+++k+ad ++l s+ E+fG+v+lE
       CCG92856.1 207 GLFVGNNWKLKGLPQICLGIAEAKKK-GLIINLLVVGRGDHEAMGSF-LRAKGIANQVGFIGLVS-EEIENFYKAADFLILLSQFESFGMVVLE 297
                      58899999999999999999999988.9*********8777665555.59**************9.99************************** PP

                      HHHTT--EEEETTTTHCHHCHTTTSEEEE-TT.-HHHHHHHHHHHHHSHHHHHHHHHHHHH CS
  Glycos_transf_1 112 AmaaglpviasnaggpaevvkdgetGllvkpn.naealaeairklledeelrerlgenark 171
                      Ama+ lpvi s+  g+ +v  +g++ l + +  +++++a a  kl +d+  r+ +g nar+
       CCG92856.1 298 AMASALPVILSADIGAWDVAIEGVNALKIVNAeDPQEIAMAYSKL-SDPLVRKTMGHNARE 357
                      ************************999877777******999985.677788888888886 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.1   2.7e-22     8e-19       5     131 ..     208     342 ..     205     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 2.7e-22
                      EEES---GG.GTHHHHHHHHHHHH.HH..EEEEEES---...HHHHHHHT..T-T.TEEEE---.THHHHHHHH-SEEEE--..---SHHHHHH CS
  Glyco_trans_1_4   5 lfvGrleenvkgvdllleavpllrkkd..vrlvivGdgp.rpeeleelaa..gleerveftGfv.edlaellaaadvfvaPs..egfglkllEa 90 
                      lfvG+   + kg+  ++  +++ +kk   ++l++vG+g+ +  ++ + ++  g++++v f G v e+++++++aad +++ s  e+fg+++lEa
       CCG92856.1 208 LFVGNN-WKLKGLPQICLGIAEAKKKGliINLLVVGRGDhE--AMGSFLRakGIANQVGFIGLVsEEIENFYKAADFLILLSqfESFGMVVLEA 298
                      799988.57799999999999999885689******99743..555533334************999***************999********* PP

                      HHTT-EEEE-.TGGGTTT--.TTSSE.E--TT-HHHHHHHHHHH CS
  Glyco_trans_1_4  91 maaglpvVat.dvggiaevv.gengl.lvppgdpealaeailrL 131
                      ma++lpv+ + d+g++  ++ g+n+l +v+++dp+++a a  +L
       CCG92856.1 299 MASALPVILSaDIGAWDVAIeGVNALkIVNAEDPQEIAMAYSKL 342
                      **********788665555599**96477999******998887 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   7.9e-15   2.4e-11       2     170 .]      23     180 ..      22     180 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 7.9e-15
  Glyco_transf_4   2 GGverhvleLaraLarrG.heVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrl 95 
                     GG+er+v++++++  r+  +eV +++ ++++  ++        ++vp+++ +r+  +l+f + + ++++++k+D+vH+h+ +a +          
      CCG92856.1  23 GGAERFVWQVTERISRLPfIEVNLFAARWKETNPRI-----ICHKVPILKIGRCSTRLSFCWNAHQMVQNGKYDLVHCHDLVANC----DVIT-F 107
                     9***************9846*********9999988.....889************************************77763....3344.8 PP

  Glyco_transf_4  96 giplVltvHglyekrllkarlkplsrllralerrl..lrradrviavSeatadelrerygvppekitVipnGvDler 170
                     g+p+ + v         k+ l+p++ l+r+le+++   +    ++ +S+ ++  ++++y+   +k+ V+ +Gv  +r
      CCG92856.1 108 GVPHLFWVKEIQ----KKNMLSPYNHLIRWLEKKTlySKTLSWILPNSQRAKTAFAQYYPDLLSKVQVVSPGVEFDR 180
                     999999999999....69999**************977788889999**********9995559*********9876 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.6e-07    0.0017       5      90 ..     285     371 ..     272     373 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5.6e-07
  Glyco_trans_1_2   5 psrsespnlrlfEaaacGafaltddaegleelftpgk...evilfedleelaekiryllanpeerraiaeaarervlaehtydhraeql 90 
                      +s+ es+ ++++Ea+a+  +++ ++  g  +   +g    +++ +ed++e+a +  +l ++p  r+ ++++are   +++++ + ae  
       CCG92856.1 285 LSQFESFGMVVLEAMASALPVILSADIGAWDVAIEGVnalKIVNAEDPQEIAMAYSKL-SDPLVRKTMGHNARET-AKKYDWSKVAEAT 371
                      566699***************9997777777777776555678888999999999995.9**************9.8899***999975 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.2e-06     0.016       1      84 [.      23     100 ..      23     163 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.2e-06
  Glyco_trans_4_4   1 gGigryvaelaraLaar.GheVtvltpapapgapeleedgvrvhrlpvprrpspladlaalralrrllrqrrerpdvvhahspta 84 
                      gG++r v ++ ++  ++   eV ++++++ +  p++   +v++  +         ++l++++ + +++  +  ++d+vh+h++ a
       CCG92856.1  23 GGAERFVWQVTERISRLpFIEVNLFAARWKETNPRIICHKVPILKIGRC-----STRLSFCWNAHQMV--QNGKYDLVHCHDLVA 100
                      89***************556*******9999999655556666554444.....468***********..***********9743 PP

>> Glyco_hydro_19  Chitinase class I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013      0.37     109     161 ..      69     121 ..      56     133 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
  Glyco_hydro_19 109 GrGpiqlsynynygeaGqaiGqdllnnpdlvatdavvsfktalwfwmtaqspk 161
                     Gr   +ls+ +n ++  q+   dl++  dlva+  v++f     fw+++ ++k
      CCG92856.1  69 GRCSTRLSFCWNAHQMVQNGKYDLVHCHDLVANCDVITFGVPHLFWVKEIQKK 121
                     899999************999*************************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2974.97
//
Query:       CCG92857.1  [L=248]
Description: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-18   66.9   0.0    2.9e-18   66.3   0.0    1.3  1  Methyltransf_11  Methyltransferase domain
    2.2e-16   60.2   0.0    3.1e-16   59.7   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    2.4e-13   50.6   0.0    3.9e-13   49.9   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    2.4e-13   50.1   0.0    2.6e-12   46.8   0.0    2.0  1  Methyltransf_31  Methyltransferase domain
    3.2e-12   47.1   0.0    6.2e-12   46.1   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    1.2e-10   41.3   0.0    1.9e-10   40.7   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
    7.1e-10   38.6   0.0    1.3e-09   37.8   0.0    1.5  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    1.6e-08   34.0   0.1    2.5e-08   33.4   0.1    1.2  1  DREV             DREV methyltransferase
    3.5e-07   29.8   0.0    6.2e-07   29.0   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
    6.3e-06   26.2   0.0    8.8e-06   25.7   0.0    1.2  1  Methyltransf_8   Hypothetical methyltransferase
    7.8e-06   24.7   0.0    9.4e-06   24.4   0.0    1.2  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
      0.003   17.1   0.1     0.0074   15.8   0.0    1.7  2  CheR             CheR methyltransferase, SAM binding domain
  ------ inclusion threshold ------
      0.018   14.6   0.0      0.026   14.1   0.0    1.2  1  TRM13            Methyltransferase TRM13
      0.018   14.5   0.0      0.068   12.7   0.0    1.9  1  DOT1             Histone methylation protein DOT1
      0.021   14.1   0.0      0.078   12.3   0.0    1.8  1  Methyltransf_2   O-methyltransferase domain
      0.026   13.6   0.0      0.048   12.7   0.0    1.3  1  RrnaAD           Ribosomal RNA adenine dimethylase
      0.057   13.4   0.0       0.08   12.9   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
      0.089   12.0   0.1        4.1    6.5   0.0    2.1  2  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family
       0.12   11.6   0.0       0.23   10.7   0.0    1.6  1  Rsm22            Mitochondrial small ribosomal subunit Rsm22
       0.14   12.1   0.0       0.26   11.2   0.0    1.5  1  HTH_51           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   3.3e-21   2.9e-18       1      96 []      27     116 ..      27     116 .. 0.92

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 3.3e-21
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGl 93 
                      Ld+G+G+G l + ++++   +++++D++++ +++      +++  ve+v  +   lp+ dnsfD+++++ev++h+++ +k+l+e++RvLkp Gl
       CCG92857.1  27 LDIGSGKGELIRLVKEKWdLSTFACDYTDKWMEVK-----NQK--VEVVDLNTDPLPYSDNSFDIITCTEVVEHLNNYRKLLQEMYRVLKPQGL 113
                      8**************8889*********9999444.....444..6779999999*************************************** PP

                      EEE CS
  Methyltransf_11  94 lvi 96 
                      +vi
       CCG92857.1 114 VVI 116
                      986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   3.4e-19   3.1e-16      11     163 ..      12     176 ..       5     178 .. 0.69

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 3.4e-19
  Methyltransf_23  11 dklerllpklraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellr 103
                      +k+e+  + l +++ +LdiG G+G+l ++ +e++  s  + D  ++  e   k +k + +  + +  ++++++fd+I+++ev eh+ ++ +ll+
       CCG92857.1  12 KKIEQRID-LSSKKQLLDIGSGKGELIRLVKEKWDlSTFACDYTDKWMEV--KNQKVEVVDLNTDPLPYSDNSFDIITCTEVVEHLNNYRKLLQ 102
                      55555554.78999**************9977553355555554332222..11111111222234455999********************** PP

  Methyltransf_23 104 qiatllkpgGylllsep.laslkedrllldwlyl..............vpag.rhisffsarslkelleeaGlevv 163
                       +++ lkp+G++++s+p l++lk+++++ + +++              +    +his      l + l+eaG++ +
       CCG92857.1 103 EMYRVLKPQGLVVISTPnLVNLKSRMRFFSFGFWnlfgplpfdriqreD--TdGHISPVHFFYLVHGLHEAGFSKI 176
                      ****************945688999998885555444444444444313..2488877777778888888888776 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   4.4e-16   3.9e-13       2      97 .]      27     112 ..      26     112 .. 0.91

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 4.4e-16
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkp 95 
                      Ld+G G+G+l++ + +++ + +  ++D++++ +e  ++++       e+v  + + lp+ d+sfD+++++ +++hl+  +++k+l+e++rvLkp
       CCG92857.1  27 LDIGSGKGELIRLVKEKW-DLSTFACDYTDKWMEVKNQKV-------EVVDLNTDPLPYSDNSFDIITCTEVVEHLN--NYRKLLQEMYRVLKP 110
                      9****************8.689999999998888766655.......899999999*************888***98..789************ PP

                      EE CS
  Methyltransf_25  96 gG 97 
                      +G
       CCG92857.1 111 QG 112
                      99 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   2.9e-15   2.6e-12       2     117 ..      21     123 ..      20     137 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 2.9e-15
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee..leklledekfDlilsnevlnaladpdki 93 
                      ++++++lD+G+G+Gel+    e+          D s +a  +  +     +++n ++e+ d ++  l+  ++d++fD+i++ ev+ +l++  k 
       CCG92857.1  21 SSKKQLLDIGSGKGELIRLVKEK---------WDLSTFACDYTDKWM---EVKNQKVEVVDLNTdpLP--YSDNSFDIITCTEVVEHLNNYRKL 100
                      6899************9999965.........466666666666643...355666666666663477..************************ PP

  Methyltransf_31  94 leeiervlkpggilliedprllae 117
                      l+e+ rvlkp+g ++i++p+ l +
       CCG92857.1 101 LQEMYRVLKPQGLVVISTPN-LVN 123
                      *******************9.444 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   6.9e-15   6.2e-12       1      98 [.      27     113 ..      27     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 6.9e-15
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L+iG+G G+l+r + ek         D+s+ a+ d   k  + +n+++++v+l+++ l  +d   sfD++++ +v++hl++ r++l++++++Lk
       CCG92857.1  27 LDIGSGKGELIRLVKEK--------WDLSTFAC-DYTDKWMEVKNQKVEVVDLNTDPLPYSDN--SFDIITCTEVVEHLNNYRKLLQEMYRVLK 109
                      8****************........77888777.77777779999999999999999887776..***************************** PP

  Methyltransf_12  95 pgGr 98 
                      p G 
       CCG92857.1 110 PQGL 113
                      **97 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   2.1e-13   1.9e-10      13     125 ..      22     134 ..      10     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 2.1e-13
        MetW  13 pgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldellrigrr...aivs 108
                 ++ ++ld+G+G+Gel++l+ke+ ++++   +  ++ +  + ++ ++v+  dl++d   ++d+sfd++  +  +  ++n +++l+e+ r+ +    +++s
  CCG92857.1  22 SKKQLLDIGSGKGELIRLVKEKWDLSTFACDYTDKWME-VKNQKVEVV--DLNTDPLPYSDNSFDIITCTEVVEHLNNYRKLLQEMYRVLKPqglVVIS 117
                 45679*************************99888765.555556776..78889999*******************************874334899* PP

        MetW 109 fPnfGhWrvrlsllskG 125
                  Pn+   + r++++s G
  CCG92857.1 118 TPNLVNLKSRMRFFSFG 134
                 ***********999877 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.4e-12   1.3e-09      90     178 ..      55     140 ..       3     148 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.4e-12
                      HHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE----SHHHHHHHHHHHH.HHHHHH CS
  Ubie_methyltran  90 kklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsqayelyskevlPvlG 178
                      +k +e   +++e +  n+  Lp++d+sfD++t +  +  + ++ k L+e+yrvlkp G +v+   s ++l  l+     +s+ +   +G
       CCG92857.1  55 DKWMEVKNQKVEVVDLNTDPLPYSDNSFDIITCTEVVEHLNNYRKLLQEMYRVLKPQGLVVI---STPNLVNLKSRMRFFSFGFWNLFG 140
                      34555566689999********************************************8764...666666666666666666655555 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.1   2.8e-11   2.5e-08      93     187 ..      21     117 ..       8     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2.8e-11
        DREV  93 qedkklldlGaGdGeitkrvaptfee.vyatelsetmrdrlkkkkynvlsale..lqetdvkldlilclnlldrcfdplklledirsalepngrviva 187
                   +k+lld+G+G+Ge+ + v++  +   +a + + + ++ +k +k +v+  +   l  +d  +d+i+c ++++   +  kll++++ +l+p+g v+++
  CCG92857.1  21 SSKKQLLDIGSGKGELIRLVKEKWDLsTFACDYTDKWME-VKNQKVEVVDLNTdpLPYSDNSFDIITCTEVVEHLNNYRKLLQEMYRVLKPQGLVVIS 117
                 36789****************9998559***99887443.444555555544335999*************************************997 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   6.9e-10   6.2e-07      52     166 ..      12     118 ..       7     132 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 6.9e-10
                 HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGTSGGGHHHHHH CS
        CMAS  52 dlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedldekvdrvvsvgafehvgkenydtffk 150
                 + i ++++l   ++lLdiG G G+l+r   e++d + ++    ++ +++ +++v+ +dl+     + l y d  + +d +   +++eh+  +ny +  +
  CCG92857.1  12 KKIEQRIDLSSKKQLLDIGSGKGELIRLVKEKWDLSTFACDYTDKWMEVKNQKVEVVDLNT----DPLPYSD--NSFDIITCTEVVEHL--NNYRKLLQ 102
                 566788999999**********************************************765....4567775..79************8..69****** PP

                 HHHHHS-TT-EEEEEE CS
        CMAS 151 klkkllkedGllllht 166
                 +++++lk++Gl+++ t
  CCG92857.1 103 EMYRVLKPQGLVVIST 118
                 ************9987 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   9.9e-09   8.8e-06      63     157 ..      10     117 ..       6     157 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 9.9e-09
                     HHHHHCTS...-TTS-EEEES-TT-HHHHH--S-..EEEE..E.....SS-SSTTEEES-T..TS-S--TT-EEEEEEES---..SS-HHHHHHH CS
  Methyltransf_8  63 iirklkkk...kdnlvvadlGcGeakiaeavrekekvrsf..d.....lvavnervvacdl..akvPledesvdvavfclslm..gtnladflke 143
                     +i+k++++    +++ + d+G G+  +   v+ek ++ +f  d     +   n++v++ dl    +P  d+s d++ +   ++   +n+++ l+e
      CCG92857.1  10 VIKKIEQRidlSSKKQLLDIGSGKGELIRLVKEKWDLSTFacDytdkwMEVKNQKVEVVDLntDPLPYSDNSFDIITCT-EVVehLNNYRKLLQE 103
                     677777662223467799**********999999999988443222334567899*****95556999******97655.444125799****** PP

                     HHHHEEEEEEEEEE CS
  Methyltransf_8 144 anrvlkvGGllkva 157
                     ++rvlk+ Gl+ ++
      CCG92857.1 104 MYRVLKPQGLVVIS 117
                     **********9885 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.1e-08   9.4e-06     170     223 ..      70     122 ..      10     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.1e-08
  Methyltransf_29 170 lgtkrlpyPsrsfdlihCsrCridwteedgilllevdRvlRpgGyfvlsappvy 223
                      l t  lpy  +sfd+i C+   +++ ++  +ll e+ Rvl+p+G  v+s+p++ 
       CCG92857.1  70 LNTDPLPYSDNSFDIITCTE-VVEHLNNYRKLLQEMYRVLKPQGLVVISTPNLV 122
                      78999*************98.589999999********************9876 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.1   5.5e+03      17      44 ..       8      35 ..       5      35 .. 0.65
   2 !   15.8   0.0   8.2e-06    0.0074     132     179 ..      77     122 ..      40     133 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.1
                HCCH.HHHHHHHTSSSEEEEEES-TTTH CS
        CheR 17 kevlepllakaknekrvriwsagcssGe 44
                ++v+++  +++  +++ +++ +g+++Ge
  CCG92857.1  8 NSVIKKIEQRIDLSSKKQLLDIGSGKGE 35
                4555445555555677888889998886 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 8.2e-06
                 GGG--EEEEEE-SSGGGC-CHHHHHHHHHHHCCEEEEEEEEE-TTB-- CS
        CheR 132 svlgklDvifcrnvliYfdeetqekvlerfaeklkpgglLllGhsEsl 179
                    +++D+i+c +v+  +++   +k+l+++++ lkp+gl+++   + +
  CCG92857.1  77 YSDNSFDIITCTEVVEHLNNY--RKLLQEMYRVLKPQGLVVISTPNLV 122
                 35689***********99865..78***************99765555 PP

>> TRM13  Methyltransferase TRM13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.9e-05     0.026       4      50 ..       8      65 ..       6      82 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.9e-05
       TRM13  4 sslignleelkllekssayvEfGaGkgelsryvnqaleed...........kkensky 50
                +s+i+++e++ +l+++++++++G+Gkgel r v++ +  +           + +n+k+
  CCG92857.1  8 NSVIKKIEQRIDLSSKKQLLDIGSGKGELIRLVKEKWDLStfacdytdkwmEVKNQKV 65
                69*******************************9988666566555555555555555 PP

>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.6e-05     0.068      29      82 ..       9      61 ..       4     132 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.6e-05
                HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE--HHHHHHH CS
        DOT1 29 eflsevldkvnlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnasela 82
                ++++++ ++++l++++  +D+GSG G+++ ++  +  +  ++ ++ +d+  e+ 
  CCG92857.1  9 SVIKKIEQRIDLSSKKQLLDIGSGKGELIRLVKEKWDLS-TFACDYTDKWMEVK 61
                6788999**********************9998888777.56666666555444 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.7e-05     0.078      50     165 ..      10     117 ..       3     129 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.7e-05
                     HHHHHHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS-----TTEEEEES-TTTS-----SE....EEEESSGGGS CS
  Methyltransf_2  50 vakkvleafdleglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehlsageeervefvgGdffkdslPeaDa....illkrvlhDw 140
                     v kk+ + +dl++ k+l+D+G G G l++ + +++         l++ + +  ++    ++++ve+v  d+  d+lP +D     i  + v+   
      CCG92857.1  10 VIKKIEQRIDLSSKKQLLDIGSGKGELIRLVKEKWD--------LSTFACDYTDKWMEVKNQKVEVV--DLNTDPLPYSDNsfdiITCTEVVEHL 94 
                     4567778899*********************99874........44444444444344445577777..78899999776511104444444332 PP

                     -HHHHHHHHHHHHHH--TT-EEEEE CS
  Methyltransf_2 141 sdekcvklLkrvkkalpagGkvivv 165
                       ++ +klL+++++ l+++G v++ 
      CCG92857.1  95 --NNYRKLLQEMYRVLKPQGLVVIS 117
                     ..567899*********99999885 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.4e-05     0.048      12      44 ..       4      36 ..       2      49 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.4e-05
                EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCC CS
      RrnaAD 12 flknkkvineIldklnleekltvleigpGkGil 44
                + + ++vi++I + ++l+ k+++l+ig+GkG l
  CCG92857.1  4 YSIYNSVIKKIEQRIDLSSKKQLLDIGSGKGEL 36
                5566789************************76 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     9e-05      0.08      12      71 ..      10      65 ..       2     116 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9e-05
  Methyltransf_32 12 lvakllkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekra 71
                     +++k +++  + s++++++D+G+Gkg L + ++    +  l+ ++ d  ++ +e  ++  
       CCG92857.1 10 VIKK-IEQRIDLSSKKQLLDIGSGKGELIRLVKE---KWDLSTFACDYTDKWMEVKNQKV 65
                     3444.4444778899*****************99...88999999999999999887765 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.04        36      41      66 ..       9      32 ..       2      59 .. 0.85
   2 ?    6.5   0.0    0.0045       4.1     155     197 ..      75     116 ..      57     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.04
                    HHHHHHHHHHHTSSS-ECEEEEET-T CS
  NNMT_PNMT_TEMT 41 faLknllqtlatgekkgdtllDiGaG 66
                      +k + q++  + k  ++llDiG+G
      CCG92857.1  9 SVIKKIEQRIDLSSK--KQLLDIGSG 32
                    567889999998888..99******9 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0045
                     SS..EEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE CS
  NNMT_PNMT_TEMT 155 lpkkadvvvtifcleaacedleeylralrnlasllkpGGhlvl 197
                     lp   d    i++   + e+l++y++ l+++ ++lkp G +v+
      CCG92857.1  75 LPY-SDNSFDIITCTEVVEHLNNYRKLLQEMYRVLKPQGLVVI 116
                     554.5555566666778899*******************9886 PP

>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00026      0.23      14      61 ..       2      50 ..       1     119 [. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
       Rsm22 14 atyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.elee 61
                +ty++ ++v++++++r++    k+lld+g+g g  +  ++e w+ +++ 
  CCG92857.1  2 STYSIYNSVIKKIEQRIDLSSKKQLLDIGSGKGELIRLVKEKWDlSTFA 50
                58*****************************************966554 PP

>> HTH_51  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00029      0.26      58      86 ..      90     118 ..      86     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00029
      HTH_51  58 rikhlpkhkrlvdylYevLeearlvdldg 86 
                  ++hl+++++l++ +Y+vL+ ++lv ++ 
  CCG92857.1  90 VVEHLNNYRKLLQEMYRVLKPQGLVVIST 118
                 479*********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 1949.11
//
Query:       CCG92858.1  [L=254]
Description: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-16   60.3   0.0    3.2e-16   59.8   0.0    1.3  1  Methyltransf_11  Methyltransferase domain
      4e-16   59.3   0.0    5.3e-16   58.9   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    4.3e-11   43.4   0.0    7.6e-11   42.6   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    1.4e-08   34.7   0.0    1.9e-07   31.0   0.0    2.1  1  Methyltransf_31  Methyltransferase domain
    6.4e-08   32.2   0.0    8.2e-08   31.9   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
    1.1e-07   31.6   0.0    1.6e-07   31.1   0.0    1.1  1  MetW             Methionine biosynthesis protein MetW
    0.00013   22.6   0.0    0.00028   21.5   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
    0.00032   19.4   0.0    0.00043   19.0   0.0    1.1  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
     0.0025   17.7   0.0     0.0029   17.5   0.0    1.2  1  Methyltransf_8   Hypothetical methyltransferase
  ------ inclusion threshold ------
       0.02   14.2   0.0       0.08   12.3   0.0    1.8  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.069   13.3   0.0       0.27   11.3   0.0    1.7  2  FtsJ             FtsJ-like methyltransferase
      0.078   12.4   0.0       0.12   11.8   0.0    1.4  1  TehB             Tellurite resistance protein TehB
      0.096   11.7   0.0       0.15   11.1   0.0    1.2  1  RrnaAD           Ribosomal RNA adenine dimethylase


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   2.3e-19   3.2e-16       1      96 []      40     129 ..      40     129 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 2.3e-19
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.TSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaek.lpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGl 93 
                      Ldv +G G+l+  l+++g++v+gvD++ e+ + +++ + +        +ad+ + +pfed+ fDl vs e ++h+e+p ++++ei RvL++gG+
       CCG92858.1  40 LDVPMGPGALSVILHQNGYQVFGVDIDLEQSEPVQSYVIR-------KKADLNDsIPFEDEFFDLAVSLEGIEHLENPFQFIREISRVLRQGGY 126
                      79999************************99777555544.......579999857************************************** PP

                      EEE CS
  Methyltransf_11  94 lvi 96 
                      +++
       CCG92858.1 127 FIL 129
                      985 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   3.8e-19   5.3e-16      10     132 ..      21     143 ..      13     187 .. 0.73

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 3.8e-19
  Methyltransf_23  10 sdklerllpk..lraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae..kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdpp 99 
                       +++  l +k  l +g++vLd+  G G l+ +l +ng++v gvD++ e++e ++   ++k  +     ++++++++ fdl+v+ e++eh+++p 
       CCG92858.1  21 HQAVISLIGKlnLAKGSKVLDVPMGPGALSVILHQNGYQVFGVDIDLEQSEPVQsyVIRKKADL---NDSIPFEDEFFDLAVSLEGIEHLENPF 111
                      44444444443368899**********************************9964433333333...44888899******************* PP

  Methyltransf_23 100 ellrqiatllkpgGylllseplaslkedrllld 132
                        +r i + l+ gGy++ls+p+  +  +++l +
       CCG92858.1 112 QFIREISRVLRQGGYFILSTPNI-CNLEERLNY 143
                      *********************86.655555554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   5.5e-14   7.6e-11       1      97 []      39     125 ..      39     125 .. 0.91

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 5.5e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaed.lpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+  G+G l+  l++++  ++v gvDi+ e+ e +++ +          ++d++d +pfed+ fDl vs  +++hl+++   ++++ei+rvL
       CCG92858.1  39 VLDVPMGPGALSVILHQNG--YQVFGVDIDLEQSEPVQSYV-------IRKKADLNDsIPFEDEFFDLAVSLEGIEHLENP--FQFIREISRVL 121
                      9*****************5..**************999988.......34678886559************888***9965..59********* PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      ++gG
       CCG92858.1 122 RQGG 125
                      ***9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.4e-10   1.9e-07       3     114 ..      35     137 ..      33     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.4e-10
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkile 95 
                      kg +vlD+  G G+l+  l+++   + +v+G+Di+ e  e  ++         v  +++d ++ ++  +ede fDl +s e + +l +p ++++
       CCG92858.1  35 KGSKVLDVPMGPGALSVILHQN---GYQVFGVDIDLEQSEPVQS--------YVIRKKADLNDsIP--FEDEFFDLAVSLEGIEHLENPFQFIR 115
                      7889****************76...567******9765555544........23335688999999..************************** PP

  Methyltransf_31  96 eiervlkpggilliedpr...l 114
                      ei+rvl++gg++++++p+   l
       CCG92858.1 116 EISRVLRQGGYFILSTPNicnL 137
                      *****************94431 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0     6e-11   8.2e-08      53     174 ..      26     139 ..      15     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 6e-11
                 HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---.--SEEEEES-GGGTSGGGHHHHHH CS
        CMAS  53 lileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde.kvdrvvsvgafehvgkenydtffk 150
                  +++kl+l +G+++Ld+  G G+l +   ++ + +v+g+ +  eq + ++  v +         +l d   +++  +d  vs++ +eh+  en  +f++
  CCG92858.1  26 SLIGKLNLAKGSKVLDVPMGPGALSVILHQN-GYQVFGVDIDLEQSEPVQSYVIRKK------ADLNDSIPFEDeFFDLAVSLEGIEHL--ENPFQFIR 115
                 4689********************9998888.****************999986655......44555555555379***********8..67789*** PP

                 HHHHHS-TT-EEEEEEEEE--HHH CS
        CMAS 151 klkkllkedGllllhtitslhkke 174
                 +++++l+++G ++l t  +++ +e
  CCG92858.1 116 EISRVLRQGGYFILSTPNICNLEE 139
                 *************99866655444 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   1.2e-10   1.6e-07      12     126 ..      34     148 ..      22     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1.2e-10
        MetW  12 kpgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldellrigrr...aiv 107
                  +gs+vld+  G G l  +l+ +++ +  G+++d e   e v+  +   + dl++    fed+ fd++v    +  + np + ++e+ r+ r+    i+
  CCG92858.1  34 AKGSKVLDVPMGPGALSVILH-QNGYQVFGVDIDLEQ-SEPVQSYVIRKKADLNDS-IPFEDEFFDLAVSLEGIEHLENPFQFIREISRVLRQggyFIL 129
                 679*************99984.466666677666654.567777555556666544.579************************9987665542228** PP

        MetW 108 sfPnfGhWrvrlsllskGr 126
                 s Pn    + rl+ + +G 
  CCG92858.1 130 STPNICNLEERLNYFFRGS 148
                 *************999996 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.1e-07   0.00028       1      99 []      40     127 ..      40     127 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.1e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++  G G+l+  l ++  + ++ gvDi+ ++ e  +    +++++ n+ + +e+         + fDl v+++ ++hl+++ +++++i ++L+
       CCG92858.1  40 LDVPMGPGALSVILHQN--GYQVFGVDIDLEQSEPVQSYVIRKKADLNDSIPFED---------EFFDLAVSLEGIEHLENPFQFIREISRVLR 122
                      56666778777777777..888999999988885555555555543333333332.........36**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      +gG++
       CCG92858.1 123 QGGYF 127
                      ***85 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.1e-07   0.00043     175     224 ..      88     136 ..      63     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.1e-07
  Methyltransf_29 175 lpyPsrsfdlihCsrCridwteedgilllevdRvlRpgGyfvlsappvye 224
                      +p+  + fdl+  s   i++ e+   ++ e+ RvlR gGyf+ls+p++ +
       CCG92858.1  88 IPFEDEFFDLA-VSLEGIEHLENPFQFIREISRVLRQGGYFILSTPNICN 136
                      67888888887.46778999999999********************9984 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.1e-06    0.0029     110     156 ..      81     129 ..      22     172 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.1e-06
                     ES-T.TS-S--TT-EEEEEEES---.SS-HHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_8 110 acdl.akvPledesvdvavfclslm.gtnladflkeanrvlkvGGllkv 156
                       dl   +P ede  d+av    +   +n  +f++e+ rvl++GG++ +
      CCG92858.1  81 KADLnDSIPFEDEFFDLAVSLEGIEhLENPFQFIREISRVLRQGGYFIL 129
                     4677678************887774258999**************9865 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.8e-05      0.08      47     150 ..      35     128 ..      19     151 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.8e-05
                      -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHH CS
  Ubie_methyltran  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeay 140
                      +g+kvlDv  G g l++ l ++    ++v ++Di+ +  +  +          i+        +pfed+ fD+     G+  + +  + ++e+ 
       CCG92858.1  35 KGSKVLDVPMGPGALSVILHQN---GYQVFGVDIDLEQSEPVQSY-------VIRKKADLNDSIPFEDEFFDLAVSLEGIEHLENPFQFIREIS 118
                      5667777777777666666543...34566666654333322222.......233333345789********987778**************** PP

                      HHEEEEEEEE CS
  Ubie_methyltran 141 rvlkpGGrlv 150
                      rvl+ GG ++
       CCG92858.1 119 RVLRQGGYFI 128
                      *******875 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019      0.27      17      70 ..      32      84 ..      24      92 .. 0.74
   2 ?   -1.3   0.0       1.5   2.1e+03     122     152 ..     118     145 ..      96     154 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
                T-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEES.SSS.HHH.TTEEEECS-C CS
        FtsJ 17 klfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm.apl.pgvttiqgdi 70
                + + +g +v+D+  +PG+ s +l q+ g   +v++vD+  +  +p+ + v   ++d 
  CCG92858.1 32 N-LAKGSKVLDVPMGPGALSVILHQN-G--YQVFGVDIdLEQsEPVqSYVIRKKADL 84
                4.56899*************999999.5..689**9995333366644444446665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
                 CCCCECCCEEEECCCHCCCHHHHHHHHHCCE CS
        FtsJ 122 lkllkpggtfvlkifrgeeteallkqlkkfF 152
                 +++l++gg f+l +   +++ +l+++l+ fF
  CCG92858.1 118 SRVLRQGGYFILST---PNICNLEERLNYFF 145
                 57899999998654...34444444444444 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.8e-05      0.12      19      69 ..      21      74 ..      15     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.8e-05
                -HHHHHHC...CCS-S-EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH CS
        TehB 19 hsevveav...kivkpgkvldlgcgqgrnslylsllgydvtawdknensiafle 69
                h  v++ +   ++ k +kvld+  g g  s+ l  +gy+v  +d + +  + ++
  CCG92858.1 21 HQAVISLIgklNLAKGSKVLDVPMGPGALSVILHQNGYQVFGVDIDLEQSEPVQ 74
                55555543111677899************************9997755554444 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.15      22      69 ..      27      74 ..      20      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                HHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHH CS
      RrnaAD 22 IldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllq 69
                 + klnl +  +vl++  G+G+l+++L +   qv  + +d + ++++q
  CCG92858.1 27 LIGKLNLAKGSKVLDVPMGPGALSVILHQNGYQVFGVDIDLEQSEPVQ 74
                5679***********************988888877777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2081.92
//
Query:       CCG92859.1  [L=452]
Description: Small-conductance mechanosensitive channel [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-33  115.9   1.9    4.6e-33  114.5   1.9    1.7  1  MS_channel       Mechanosensitive ion channel


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   1.9   2.6e-37   4.6e-33       5     197 ..     226     415 ..     222     420 .. 0.87

  Alignments for each domain:
  == domain 1  score: 114.5 bits;  conditional E-value: 2.6e-37
                 HHHHHHHH...HHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEHHH CS
  MS_channel   5 kiliivvg...ilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveigdieGtVediglrttkirtfdgrivtiPnss 100
                 ++ ii+++   il+ + ++    +++la++G++g+++g+a++ ++sn++aGi+l +++p+++GD+v +++  Gt+e+i+l+ + +  +d r ++ P s+
  CCG92859.1 226 YFFIILFAvssILMLFPEVRHIGTSMLASAGVIGIVVGFAAQHIFSNIFAGIQLAITQPIRLGDIVVVQGYWGTIEEITLTYVVVHVWDHRRLVLPISY 324
                 55555554011666666666669**************************************************************************** PP

                 HHTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-TTS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHH CS
  MS_channel 101 lvtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlkdkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikk 197
                 ++++ +eN++r s +   +v i v+ys +   ++ ++++l+e+l++ p +++ k  +  ++e +d+++++++   +++   ++ ++++  ++++++ 
  CCG92859.1 325 FTSNFFENWTRHSSEIMGTVYIYVDYSIP---VDSLRKQLQEILSSCPLWDQ-KVATIQVTEATDKAMEVRILLSAEN--SSKLWDLRCLVREKMIG 415
                 *****************************...*******************6.8888888888999988888888888..77777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1007  (0.056166); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 2945.87
//
Query:       CCG92860.1  [L=150]
Description: Starvation-inducible outer membrane lipoprotein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-28   99.5   0.0    1.3e-28   99.3   0.0    1.0  1  Slp             Outer membrane lipoprotein Slp family
      0.001   18.7   0.0     0.0014   18.2   0.0    1.1  1  tRNA_anti-like  tRNA_anti-like


Domain annotation for each model (and alignments):
>> Slp  Outer membrane lipoprotein Slp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   1.5e-32   1.3e-28      17     148 ..       6     143 ..       2     150 .] 0.87

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 1.5e-32
         Slp  17 telslsevkaapeaykgkevrlGGkivkvenkkdktrleivslpLdssgrPelsdeseGRflarvegFlDPaiykkgrlvTvvGtlkgsetgkigeady 115
                 +++s+ +++a+p++ykgkev lGG+++++++  +kt lei++lpLd+sg+P  + +seGRf+a+v++ +DP+ ++ g+ vT++G ++gs +g i e   
  CCG92860.1   6 KQPSFLNLTARPKRYKGKEVFLGGTVAAIKKSGKKTNLEIIELPLDESGKPAVDFPSEGRFIAEVSQEIDPTFFSVGTVVTLTGIVEGSAHGIIPEEGS 104
                 5669999******************************************************************************************** PP

         Slp 116 typvvevkgvklWpeeeveesyvkeyyye......pywy 148
                  +p+++ k +  W+e  +  ++ +++y +       +++
  CCG92860.1 105 LFPLIRTKRISPWKEPMTYGKNSTNWYDQpegnlhAWGW 143
                 *************55554445555555446777764444 PP

>> tRNA_anti-like  tRNA_anti-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.6e-07    0.0014      76     153 ..      12      97 ..      10     101 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.6e-07
                     -HHHHHHHHTT-EEEEEEEEEEEEE.-STT-E..EEEEE-TT-S-S--EEEEEEG.....GHHHHHH--TTSEEEEEEE-----SS CS
  tRNA_anti-like  76 NevkadkkYkGkiieVeGvvsdikk.ieassv..vvlardddgltnVrclledea.....teasaakiskGqkvtivGqvngvsid 153
                     N +++ k+YkGk +   G+v  ikk  ++++   + l  d+ g+  V    e ++     +e++ +  s G++vt+ G+v+g + +
      CCG92860.1  12 NLTARPKRYKGKEVFLGGTVAAIKKsGKKTNLeiIELPLDESGKPAVDFPSEGRFiaevsQEIDPTFFSVGTVVTLTGIVEGSAHG 97 
                     6678899****************99777777776888889999999998888888999888888888999***********98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1229.06
//
Query:       CCG92861.1  [L=128]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 970.28
//
Query:       CCG92862.1  [L=1076]
Description: Cation/multidrug efflux pump [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.8e-170  567.8   9.7   8.4e-170  566.7   9.7    1.5  1  ACR_tran       AcrB/AcrD/AcrF family
    0.00014   21.3  14.5      0.019   14.4   2.0    2.5  2  SecD_SecF      Protein export membrane protein
  ------ inclusion threshold ------
       0.21   10.7   0.1       0.37    9.9   0.1    1.3  1  Peptidase_M19  Membrane dipeptidase (Peptidase family M19)


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  566.7   9.7  1.4e-173  8.4e-170       2    1020 ..       4    1071 ..       3    1072 .. 0.92

  Alignments for each domain:
  == domain 1  score: 566.7 bits;  conditional E-value: 1.4e-173
                  HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTC.TS-TTEEEEEEEETTSEEEEEEEESTTS CS
    ACR_tran    2 ikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqal.ngldglkyvsSqSseglssitltFedgt 97  
                  +k+++k+p ++ v+a++il++G + i+ +P d +Pei+ p v v+ +y G+ p  +++ +t+    ++ n +dg+k + S+   g s  ++ F+   
  CCG92862.1    4 VKLSLKKPYTIGVIAILILFFGFFTIKTTPTDIFPEINIPVVVVTWQYLGLVPTDMTNYITTFSDYQIaNYVDGVKRIDSNAYFGFSVSKIYFQPYV 100 
                  789**************************************************************9983569************************* PP

                  -HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHHH CS
    ACR_tran   98 didiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkla 194 
                  di +A  +++  lq + + +P + ++p i  +++ss ++l++av+s+  sl++  l+d+  +++++ L +v+G       Gg  + + + ld ++l 
  CCG92862.1  101 DISMAVAEITSVLQPIIKRMPPGTTPPLIFRFNASSVPVLQIAVSSS--SLSESALYDYTIWQLRRDLLSVKGTMFPPPWGGVVRWMTVDLDTNQLI 195 
                  ***********************************************..************************************************ PP

                  CTT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEE............ETTSCEEEHHHCEEEEEEESSSSSEEEETTEEE CS
    ACR_tran  195 klgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivk............nqdgskvrlrDvAkVelgaeeerlaatfngkpa 279 
                  + g++++d ++al+ q  n ++G ++  ++ + +  ++  ++  +i++  +k            n +   +++rDv++V++g   + + +++ng  +
  CCG92862.1  196 ARGVSAQDALDALAGQVLNYPSGDVKIGDRDYFVTLNNVPKNLFEINDFPIKrvydpnvayvrkNINDRVIYFRDVGTVHDGGIPQVNLVRLNGVHG 292 
                  *************************88888888877777777777777666666666666776888999**************************** PP

                  EEEEEEEETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  280 vllevkklpganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavl 376 
                  +l++  k +ga +i++++++k  l+e+++  P    i+ ++d++ fvra+i+ Vv++   a++L  l+++lFL++ r+t ++++++Pl +  ++ +l
  CCG92862.1  293 ILMTTLKTMGASTIQIVDQIKSLLPEIRKANPD-KRIQELFDQSVFVRAAIKGVVFEAASAALLTGLMILLFLRSPRSTFVVLTSIPLCIFTALFLL 388 
                  *****************************7775.69************************************************************* PP

                  HHTT--BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  377 kalgfslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaill 473 
                  k++g++lNl+tL+gL+lA+G++vDdA V vEni+r+ e  g++pl+ ++ ++++i+ + +  +l++++vf  ++fl+G    lf ++al++vl++l 
  CCG92862.1  389 KLFGYTLNLMTLGGLALAVGILVDDATVAVENIHRNKEL-GKPPLQSIMDGSQQIALPALVATLSISVVFTSVIFLEGPPRFLFIPMALAVVLSLLF 484 
                  ************************************999.********************************************************* PP

                  HHHHHHCCHHHHHHHH.S---STT-CT.......SHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEE CS
    ACR_tran  474 svlvaltltPalcall.Lkerkeekek.......kffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlv 562 
                  s++++  l+ a+  ll  k+++++k         k+   f + fe+l  aY k l++vl +r++    +  ++  s+l f++i++ f+P  d g + 
  CCG92862.1  485 SYVLSRSLVTAMIFLLeFKPHEARKTDqffsffyKIQGSFYNNFERLRVAYSKALRIVLTNRKKFYFWVSFFITSSLLTFPFIGRDFFPTVDAGIMR 581 
                  *********999877656777777776677544444456788899**************************************************** PP

                  EEEE-STTB-HHHHHHHHHHHHHHHH...TTTTEEEEEEEECE........CS.SE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTS CS
    ACR_tran  563 tsvqlppgvsleqtqkvlkqvekilk...ekpevesvfavtGf........ae.sgdtagpnsakvfisLkpekerkeeeksvealierlrkelkki 647 
                  ++v +p g+ le+t++  + +e ++k      e e ++   G+        a+ ++ ++g + ++++i+Lk ++ r       +  +++lrk l+k 
  CCG92862.1  582 LHVYTPTGTRLEKTEEYFSRIEATIKkiiPPTELETIVDNIGLpiyfmatlAMsDSMNQGSFDGEIMINLKEKH-R-----PTAFYMKQLRKTLRKE 672 
                  **********************9988422356888888888853222222234466788888999999999877.5.....5667889999999887 PP

                  TSSEEEEEETTSSCCCSSSSCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHT CS
    ACR_tran  648 pganvellapiqlreletlsgvrselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalg 744 
                      v++++p ++  +    g  + ++v++ g+d +   e a + laa++++p+++d +  q  d p l++e+d+ +a ++G+    i + + + l+
  CCG92862.1  673 FPDCVFFFQPADMVNQVLNFGTPAPIDVQVIGTDEKLTAEFAVESLAAIRKIPGIADAHIHQRFDYPTLHLEVDKVRAIEMGLFQIHIANNILNQLS 769 
                  777789*********999999**************************************************************99999998888898 PP

                  TEEEEE.E..E..ETTEEEEEEEEE-GGGSSSGGGGCCSEEEETTSC.....................EEEGGGTEEEEEEEE-SEEEEETTCEEEE CS
    ACR_tran  745 gsyvnd.f..i..eegrrvkvvvrleedlrsspedlkklkvrnkkgk.....................mvplsavakieeekgpnsierengsrsvv 815 
                  +sy+ +    +  +   ++ +    ++ + +s++dl ++++++ +                          l++v+++++++ p  i++   ++++ 
  CCG92862.1  770 SSYMVKpTywPdpKTTINYPLLAFSPQLKFNSINDLLNIPLTSITTPflvgttpsvestqtllgnvlnPELLANVVSLTHSQEPAMISHSTMKPVFD 866 
                  8776431311311333456677778889999***********9998889999************9877778************************** PP

                  EEEEESTTS-HHHHHHHHHHHC..TT..SSTTEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHT CS
    ACR_tran  816 isgnvaegdslseaeeavekia..kkvklpegvtiewtgqaeqeqeasnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllr 910 
                  i+ nv+++d+ s a  +++k++  +k klp+ ++i+ +gq  + ++a ++l + ++ a++lv+l++ + ++s++ep++il+ +P+a  G l  l+++
  CCG92862.1  867 ILCNVQDRDLGSVAGSIEKKLEplRK-KLPPLYRINISGQVTSMNSAFQQLGFGIVFAIILVYLLMVINFQSWREPFIILTGLPIAACGVLWMLFIT 962 
                  **********9998888877753345.7********************************************************************* PP

                  T--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  911 glelsviaqvGlilliGlavkNaillvefakelrekegksleeaileaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstv 1007
                   ++++v ++ G+++ iG+ + N ill++fa++  + eg+s+ ea +ea+  R+rPiLMTa a+i+G+lP+ l+  +G e   plg +v+gGl++ tv
  CCG92862.1  963 RTTFNVPSLMGILMAIGVTSSNSILLITFANQRVK-EGLSPLEASIEAGTIRFRPILMTATAMIIGMLPMSLGLTEGGEQYMPLGRAVIGGLLIGTV 1058
                  **********************************9.************************************************************* PP

                  HHHHHHHHHHHHH CS
    ACR_tran 1008 LtLllvPvlYvlv 1020
                   tL++vP ++  +
  CCG92862.1 1059 GTLFFVPSMFTTI 1071
                  **********987 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   4.9   1.8e-05      0.11      35     175 ..     347     485 ..     312     500 .. 0.69
   2 !   14.4   2.0   3.1e-06     0.019      28     186 ..     911    1071 ..     886    1074 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHHHHHHHHHT-HHH.HHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHH CS
   SecD_SecF  35 lallialvliliyvalrFewrv.alaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnqtL 132
                 +  + a +l  +++ l  + +   + +++++   +++++ +l l+g  ++l t+++l   +G  v+d  v  + +  n ++  + +l+ i++ s +  L
  CCG92862.1 347 FEAASAALLTGLMILLFLRSPRsTFVVLTSIPLCIFTALFLLKLFGYTLNLMTLGGLALAVGILVDDATVAVENIHRN-KELGKPPLQSIMDGSQQIAL 444
                 444444444444555555554404455555888899999999**********************************99.777899************** PP

                 HHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTH CS
   SecD_SecF 133 trtiltslttllvvvallllggdslkdfalallvGlivgtyss 175
                    ++t  +  +v  ++++l ++  + + + + +++++  + s
  CCG92862.1 445 PALVATLSI-SVVFTSVIFL-EGPPRFLFIPMALAVVLSLLFS 485
                 *66666555.4444444433.3333444444444555444444 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 3.1e-06
                  HHHHHHHHHHHHHHHHHHHHHHHHT-.HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHH CS
   SecD_SecF   28 elaekavlallialvliliyvalrFe.wrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkei 123 
                    +++  + +++a++l+ + +++ F+ wr ++ +++ l   ++ ++ +l +++  +++ +++++L+ iG    +++++ +   +++++    +l+  
  CCG92862.1  911 SAFQQLGFGIVFAIILVYLLMVINFQsWREPFIILTGLPIAACGVLWMLFITRTTFNVPSLMGILMAIGVTSSNSILLITFANQRVKE-GLSPLEAS 1006
                  4567778899999999999999***868999999999***************************************999876666444.44555555 PP

                  HHHHHH..HHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHH CS
   SecD_SecF  124 inlsln..qtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiasplllll 186 
                  i+ +      + +t +++++ +l++   l  gg+    +  a++ Gl++gt+ ++f+   + +++
  CCG92862.1 1007 IEAGTIrfRPILMTATAMIIGMLPMSLGLTEGGEQYMPLGRAVIGGLLIGTVGTLFFVPSMFTTI 1071
                  5444320123444555555555554444555778899999999***********99988877766 PP

>> Peptidase_M19  Membrane dipeptidase (Peptidase family M19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   6.2e-05      0.37     191     224 ..     847     880 ..     841     882 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 6.2e-05
                    HHH-SSE.EECCEEBTTTS--TTSB-HHHHHHHH CS
  Peptidase_M19 191 lelSkaPvvaSHSnaralcdhpRNltDeqlkaia 224
                    l  S+ P+++SHS ++ ++d+  N++D+ l  +a
     CCG92862.1 847 LTHSQEPAMISHSTMKPVFDILCNVQDRDLGSVA 880
                    5679************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1076 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       957  (0.0533772); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.40s 00:00:01.41 Elapsed: 00:00:00.58
# Mc/sec: 5576.96
//
Query:       CCG92863.1  [L=407]
Description: Membrane-fusion protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-21   76.6   0.3    2.4e-21   76.0   0.3    1.2  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    1.9e-12   47.8   1.0    7.1e-10   39.5   0.3    2.6  2  HlyD_3           HlyD family secretion protein
    1.3e-10   40.9   0.0    1.2e-08   34.7   0.0    3.3  3  Biotin_lipoyl_2  Biotin-lipoyl like
    0.00015   21.5   0.3     0.0016   18.2   0.0    2.7  3  Biotin_lipoyl    Biotin-requiring enzyme
     0.0027   16.5   1.4      0.094   11.4   0.0    2.3  2  HlyD_2           HlyD family secretion protein
  ------ inclusion threshold ------
       0.32   10.9   1.9       0.86    9.5   0.2    2.0  2  TarH             Tar ligand binding domain homologue


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.3   7.9e-25   2.4e-21      22     214 .]     117     322 ..     113     322 .. 0.88

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 7.9e-25
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  22 vsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalkakkklkkke........lleaarerLrllgvseeqiaelektgkvqktvtvk 112
                 + arv+G+++k yv+ +gd+Vk Gq L e+++pe+ + + e   a+++  +++ ++         ++a++   +  g  e+++ael k  + q+  +v+
  CCG92863.1 117 IWARVNGYIKKWYVD-IGDRVKTGQLLCEIDAPEV-DKEVEHARAKAEIARISYERwknlvksrAVSAQEYDVQRTGY-EAALAELDKLLQWQSFEKVT 212
                 679************.******************6.566777888886666655556776666578888888888886.5899**************** PP

                 XXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 113 apisGvVteknvreGqyv........qpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyptvdpetRtvkvRieldN 203
                 ap++Gv+t++n+  G  v         + ++l++ia+++ + ++++v+++    +k+g+++ev v+  +g+ + Gkv   +  +++++Rt+   ++++N
  CCG92863.1 213 APFDGVITARNIDIGTLVagqneavqGAHKQLYRIAQIDVLRIYIAVPQTYSFSIKEGMTAEVIVPEQAGTIYPGKVVRTSFGLETASRTLLTEVDVEN 311
                 *************999984443333235678******************************************************************** PP

                 XXXXXXXXXXX CS
    HlyD_D23 204 pdgkLkpgmfA 214
                 p+ kL pg+++
  CCG92863.1 312 PEMKLLPGLYV 322
                 ********996 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0051        15       4      49 ..     119     165 ..     116     195 .. 0.78
   2 !   39.5   0.3   2.4e-13   7.1e-10       1     106 []     210     319 ..     210     319 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0051
      HlyD_3   4 ApvdGvvvelnveegevvqagdelleiippd.tllveakvpaadlgs 49 
                 A v G ++++ v  g+ v  g+ l ei  p+ + +ve + + a++++
  CCG92863.1 119 ARVNGYIKKWYVDIGDRVKTGQLLCEIDAPEvDKEVEHARAKAEIAR 165
                 889************************88532445555554444444 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 2.4e-13
      HlyD_3   1 tlrApvdGvvvelnveegevvqagde........lleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktgaykvev 91 
                 +++Ap+dGv+++ n+  g  v+ + e        l +i+  d l ++++vp++++ sik +g+++++ +  + +  ++gk++r s   ++ ++++  ev
  CCG92863.1 210 KVTAPFDGVITARNIDIGTLVAGQNEavqgahkqLYRIAQIDVLRIYIAVPQTYSFSIK-EGMTAEVIVPEQAGTIYPGKVVRTSFGLETASRTLLTEV 307
                 599**********998877666444456777777************************5.*********988889************************ PP

      HlyD_3  92 slenpekksiplkpG 106
                 ++enp   + +l+pG
  CCG92863.1 308 DVENP---EMKLLPG 319
                 *****...6777776 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   3.9e-12   1.2e-08       4      49 ..     116     161 ..     113     164 .. 0.90
   2 ?    0.8   0.0      0.15   4.5e+02       4      21 ..     210     227 ..     210     231 .. 0.80
   3 ?   -0.0   0.0      0.27   8.1e+02      13      23 ..     338     348 ..     336     348 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 3.9e-12
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaql 49 
                      +I a+v+G +++++V  G+rVk+G++L e+D ++ ++++  a a++
       CCG92863.1 116 PIWARVNGYIKKWYVDIGDRVKTGQLLCEIDAPEVDKEVEHARAKA 161
                      7889*******************************99888877764 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.15
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdG 21 
                      +++ap++G++++ n+  G
       CCG92863.1 210 KVTAPFDGVITARNIDIG 227
                      689********9887665 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.27
  Biotin_lipoyl_2  13 VaqlnVkdGqr 23 
                      V +l++k+Gq+
       CCG92863.1 338 VNTLFIKEGQH 348
                      7799******8 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.5e-07    0.0016      15      45 ..     123     154 ..     117     169 .. 0.83
   2 ?   -0.6   0.0      0.41   1.2e+03      44      55 ..     210     221 ..     208     232 .. 0.79
   3 ?   -2.5   0.0       1.5   4.6e+03      16      32 ..     338     348 ..     324     353 .. 0.49

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.5e-07
                    ..ECSESSSTTCEE-TTSEEEEEECTTEEEEE CS
  Biotin_lipoyl  15 g.vvevlvkvGdkVkagqvlaeveamKmemei 45 
                    g + +++v  Gd Vk gq l+e+ a  +  e+
     CCG92863.1 123 GyIKKWYVDIGDRVKTGQLLCEIDAPEVDKEV 154
                    67899******************875555555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.41
                    EEEBSSSEEEEE CS
  Biotin_lipoyl  44 eieapkaGvvke 55 
                    +++ap +Gv++ 
     CCG92863.1 210 KVTAPFDGVITA 221
                    599******985 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.5
                    ECSESSSTTCEE-TTSE CS
  Biotin_lipoyl  16 vvevlvkvGdkVkagqv 32 
                    v + ++k+G+       
     CCG92863.1 338 VNTLFIKEGQ------H 348
                    4444555554......3 PP

>> HlyD_2  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   3.1e-05     0.094      64     105 ..     114     156 ..     113     210 .. 0.78
   2 !    3.8   0.3    0.0067        20     269     382 ..     254     372 ..     224     378 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.1e-05
      HlyD_2  64 ekviksnaegivky.fvkeGdkvkkgkkvaeiqkseadeklke 105
                 e+ i +  +g++k+ +v+ Gd+vk g+ ++ei   e+d++ ++
  CCG92863.1 114 ETPIWARVNGYIKKwYVDIGDRVKTGQLLCEIDAPEVDKEVEH 156
                 6778888999997637889****************99988654 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0067
      HlyD_2 269 Ylvtlvekeevkslkegkkvkvkvddee...inakv....ykiykedeksvvifkieeenaeflkkrieeveIiykkieGlkiPkdsivekdgkkGVYv 360
                  + + v +  + s+keg + +v+v+++    + +kv    + + ++  + +  + +e+  ++ l   +  v+I + ++   +iP ++   k+g   V v
  CCG92863.1 254 RIYIAVPQTYSFSIKEGMTAEVIVPEQAgtiYPGKVvrtsFGLETASRTLLTEVDVENPEMKLLPGLYVIVSIKVPSVAPWTIPVNTLFIKEGQHYVTV 352
                 3444445555568999999999999998887778883322345668899999999999999999999999999999*********************** PP

      HlyD_2 361 vdesgvakFkeikeilgedeky 382
                 +d +++   k+++  +g+++ y
  CCG92863.1 353 IDKNNICHLKKVE--VGNNDGY 372
                 ***********99..7877765 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.18   5.4e+02       7      47 ..      51      91 ..      47      97 .. 0.82
   2 ?    9.5   0.2   0.00029      0.86      78     147 ..     145     211 ..     135     223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.18
                XXXXXXXXXXXXXXXXXXXXSSSSSSHHHHHHHCHHHHHHH CS
        TarH  7 IrtrLllvlallgvLllvsgglglsglsrsndalrevytnr 47
                +r+ L  vl ll +L +v  +l ++ l+++ +  + +y + 
  CCG92863.1 51 LRFILGGVLLLLLLLSFVQRILNWIELQSALHESQLIYVHV 91
                67889999999999999999999999999888888777765 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00029
                 TSSSSSSHHHHHHHHHHHHHHHHHHHHHTS---GGGHH.HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH CS
        TarH  78 deaedakellaraeeslaqseeawkaYlalprtaeeeealaaelkakykalqdglapliaaleagnleaf 147
                  +a+++ + +++a++  + +  +++++++l ++    +  a+e++ +++ ++++la+l ++l+   +e++
  CCG92863.1 145 IDAPEVDKEVEHARAKAEIARISYERWKNLVKSR---AVSAQEYDVQRTGYEAALAELDKLLQWQSFEKV 211
                 5788999***************************...5789*****************999998777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.55
# Mc/sec: 2225.74
//
Query:       CCG92864.1  [L=315]
Description: O-methyltransferase I [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-07   30.5   0.0    9.4e-07   29.8   0.0    1.3  1  Methyltransf_24  Methyltransferase domain
    6.7e-07   29.2   0.0    1.5e-06   28.1   0.0    1.5  2  CmcI             Cephalosporin hydroxylase
    6.8e-05   23.0   0.0    0.00011   22.3   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
       0.12   13.1   0.0       0.23   12.2   0.0    1.5  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.1e-10   9.4e-07       1     105 [.      42     142 ..      42     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.1e-10
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalareaglddrvrlikadseealasla....agsiDllfiDgghaaeavledlea 90 
                      +EiG+ +G s  ++++ ++++   r+v +d +p   + ++ +     d r+r++ +ds e++++ +    a+++ l++ Dg+h++++ ++ + +
       CCG92864.1  42 LEIGIQNGGSLEIWAKYFENAI--RIVGCDINP---DCKN-L--RFSDPRIRVVIGDSTEEMTKNRileeASPYHLIIDDGSHKTSDIIKNFAL 127
                      7*****************9887..6********...6443.3..35689**********9999877889999********************** PP

  Methyltransf_24  91 llprlapggvvlfdD 105
                        p+la +g+ l+ D
       CCG92864.1 128 YFPQLAANGFYLIED 142
                      ***********9998 PP

>> CmcI  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.3e-10   1.5e-06      26     147 ..      29     142 ..      13     150 .. 0.80
   2 ?   -3.6   0.0       1.6   7.3e+03       9      26 ..     159     176 ..     157     181 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 3.3e-10
        CmcI  26 eliwelk..PdliietGiahGGsalfsasllallkskrkvlaididireknrqaieahplasrieliegssvdpeiveqvkslakekekvlvilDsdHt 122
                  + ++ k  P  i+e+Gi+ GGs+   a+  +++    ++++ di     n++  +     +ri ++ g+s++  + +++ + a++++  l+i D  H+
  CCG92864.1  29 TIFFNYKrlPINILEIGIQNGGSLEIWAKYFENA---IRIVGCDI-----NPDCKNLRFSDPRIRVVIGDSTEEMTKNRILEEASPYH--LIIDDGSHK 117
                 555555444999************9999887766...9*******.....555555555789************99999999888876..889****** PP

        CmcI 123 hehvlaeLeayaplvsa.GsYivveD 147
                 +  +++++++y p + a G Y+ +eD
  CCG92864.1 118 TSDIIKNFALYFPQLAAnGFYL-IED 142
                 **********988666515555.455 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.6
        CmcI   9 wlgvpiiklpqDlvayQe 26 
                 +  + ++k   D+++yQ 
  CCG92864.1 159 YASIGFFKKLIDIINYQH 176
                 566678899999999996 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.5e-08   0.00011      24     102 ..      40     121 ..      13     143 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.5e-08
                 EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS.HHH....TTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE--S-SS-CH CS
        FtsJ  24 tvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.apl....pgvttiqgditdpetiekikealserkvdlvvsDgapdvsgv 102
                 +++++g   Gg  ++ ++ ++++ ++v++D++p  ++l    p+++++ gd t++ t+++i+e    ++ +l++ Dg+ ++s +
  CCG92864.1  40 NILEIGIQNGGSLEIWAKYFENAIRIVGCDINPDcKNLrfsdPRIRVVIGDSTEEMTKNRILEE--ASPYHLIIDDGSHKTSDI 121
                 48999999***********9989********99984444788********************85..578*********777654 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.2e-05      0.23       1      55 [.      41      91 ..      41     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.2e-05
                     EEEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC CS
  Methyltransf_25  1 vLdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeeglnvefvqgda 55
                     +L++G  +G  ++ +ak + ++ +++g+Di++++      +++ +++++++v gd 
       CCG92864.1 41 ILEIGIQNGGSLEIWAKYFeNAIRIVGCDINPDCK-----NLRFSDPRIRVVIGDS 91
                     8******************769**********983.....3333456677776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       832  (0.0464053); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2080.02
//
Query:       CCG92865.1  [L=277]
Description: hypothetical protein MFUM_810061 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1977.57
//
Query:       CCG92866.1  [L=348]
Description: Ring-hydroxylating dioxygenase, large terminal subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-19   67.2   0.0    1.9e-18   66.1   0.0    1.5  1  Rieske    Rieske [2Fe-2S] domain
  ------ inclusion threshold ------
       0.11   12.6   0.1       0.22   11.7   0.1    1.4  1  DprA_WH   DprA winged helix domain


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   2.2e-22   1.9e-18       2      85 ..      22     103 ..      21     115 .. 0.92

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 2.2e-22
                 EEEEEEGGGC-TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEETTSBEEE-TTHHHE CS
      Rieske   2 wvavakesdvpegdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwaydadGkvikgPaprpl 85 
                 w +v+++  +  ++pl+++++g+++v+ r  +g+v+A++d C+H+ga ls g+i+e+  l+Cp+Hgw y+++G++i++P+ r  
  CCG92866.1  22 WNPVCPSALLI-ENPLGIELLGRRIVLARL-NGKVVAFDDLCRHLGAALSLGRIEEGRFLRCPYHGWLYNEEGRCIDIPSRRGT 103
                 88899988887.669**************6.***********************99999********************99875 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.4e-05      0.22      14      38 ..      43      67 ..      39      70 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.4e-05
     DprA_WH 14 errvLaaLgpePvhvDqLvrrtglp 38
                +r vLa+L    v++D+L+r++g+ 
  CCG92866.1 43 RRIVLARLNGKVVAFDDLCRHLGAA 67
                6779******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2527.47
//
Query:       CCG92867.1  [L=153]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.035   14.2   0.2      0.066   13.3   0.2    1.4  1  ETRAMP    Malarial early transcribed membrane protein (ETRAMP
       0.16   12.0   0.0       0.74    9.8   0.0    1.9  2  ApoO      Apolipoprotein O
       0.39   11.2   5.5       0.53   10.8   5.0    1.4  1  APG6_N    Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> ETRAMP  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   1.1e-05     0.066       1      48 [.       1      62 [.       1      70 [. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
      ETRAMP  1 MKvtkv.llffafLlavnlltpeslcdevnkkk.............ekakkaikkiddkiek 48
                MK ++v +++++fL+  +l+++ ++ d  +kk              ++a+ a+kki++++ +
  CCG92867.1  1 MKRAQVlFFLLLFLFPFSLIAQRTHYDCDKKKIviivngkvlkptdPQAQEALKKIEEEMAA 62
                99999*89999999999***9999999988655*****999999999999999999998865 PP

>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.15   8.7e+02      27      64 ..      49      86 ..      47      91 .. 0.80
   2 ?    9.8   0.0   0.00012      0.74      52      82 ..     109     142 ..      85     147 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.15
        ApoO 27 lepytsavqdelnkvkskvetaeqsvtdtiasLkeppe 64
                +++ ++++++e+  + ++ +t+++ +++  a+L +++ 
  CCG92867.1 49 AQEALKKIEEEMAAFDNWQDTLWRDFSRLEAFLLDEER 86
                67888999999999999999999999988888877654 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00012
        ApoO  52 vtdtiasLkepp...edllPrlgyilvagLaGsi 82 
                 v+++++   + p   e  +P+ g+ilv++L+Gs 
  CCG92867.1 109 VQRNYKRSMPLPrerEWSYPKNGAILVSTLSGSQ 142
                 45555444443344499***************95 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   5.0   8.9e-05      0.53      76     130 ..      45      99 ..      36     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.9e-05
      APG6_N  76 ereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqyehaq 130
                 ++ + +++l+++eee +a ++ ++  wr+++ l+  ll+ e e+ +++ q+  ++
  CCG92867.1  45 TDPQAQEALKKIEEEMAAFDNWQDTLWRDFSRLEAFLLDEEREMMKIQQQLLEDL 99 
                 5668899*************************99999999999999998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1269  (0.0707792); expected 358.6 (0.02)
Passed bias filter:                      843  (0.0470188); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1020.91
//
Query:       CCG92868.1  [L=237]
Description: Transfer origin protein, TraL, ATPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-06   26.6   0.0    6.1e-06   26.3   0.0    1.4  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    6.1e-06   26.3   0.0    1.2e-05   25.3   0.0    1.5  1  AAA_31       AAA domain
    7.6e-05   22.1   0.0    0.00012   21.4   0.0    1.3  1  VirC1        VirC1 protein
     0.0036   16.6   0.1     0.0073   15.6   0.1    1.5  1  MipZ         ATPase MipZ
     0.0047   16.4   0.1       0.01   15.3   0.1    1.5  1  ParA         NUBPL iron-transfer P-loop NTPase
     0.0051   16.0   0.1     0.0096   15.1   0.0    1.5  2  ArsA_ATPase  Anion-transporting ATPase
     0.0077   16.1   0.0       0.05   13.4   0.0    2.0  2  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-
  ------ inclusion threshold ------
      0.028   13.5   1.2      0.037   13.1   0.2    1.6  2  LpxK         Tetraacyldisaccharide-1-P 4'-kinase
      0.033   14.5   0.0      0.073   13.4   0.0    1.5  1  AAA_22       AAA domain
      0.033   13.8   0.0      0.047   13.3   0.0    1.3  1  SRP54        SRP54-type protein, GTPase domain


Domain annotation for each model (and alignments):
>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.4e-09   6.1e-06       4      39 ..      10      45 ..       7     203 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.4e-09
                EESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  4 astkGGvGKTtlaanLaralarrglrVllvDaDpqa 39
                ++ kGG+GKTt  + +a  l r+g+rV ++ aD + 
  CCG92868.1 10 MGSKGGTGKTTAMLLIADWLMRKGKRVHVIEADLEN 45
                688******************************983 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   6.9e-09   1.2e-05       9      43 ..      12      45 ..       7      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 6.9e-09
      AAA_31  9 qKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQan 43
                 KGG GKTT  + +a +l+++gk+v ++++D   n
  CCG92868.1 12 SKGGTGKTTAMLLIADWLMRKGKRVHVIEADLE-N 45
                7******************************74.3 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.9e-08   0.00012       9      40 ..      12      44 ..       5      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6.9e-08
       VirC1  9 lkGGaGkttalmglcsalasdgkrvalfead.e 40
                 kGG+Gktta++ +  +l+ +gkrv + ead e
  CCG92868.1 12 SKGGTGKTTAMLLIADWLMRKGKRVHVIEADlE 44
                59****************************944 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.1e-06    0.0073       8      41 ..      12      45 ..       6      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.1e-06
                SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT CS
        MipZ  8 ekGGsGksttavhvavaLlkkGarvaaidldlrq 41
                 kGG+Gk+t  + +a  L++kG+rv +i+ dl  
  CCG92868.1 12 SKGGTGKTTAMLLIADWLMRKGKRVHVIEADLEN 45
                69**************************999865 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   5.7e-06      0.01       9      42 ..      10      43 ..       3      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.7e-06
        ParA  9 lSgKGGVGKStvavnlAlaLakkglkvgllDaDi 42
                + +KGG GK+t    +A  L +kg++v ++ aD+
  CCG92868.1 10 MGSKGGTGKTTAMLLIADWLMRKGKRVHVIEADL 43
                678******************************8 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.3e-06    0.0096       4      38 ..       8      42 ..       5     106 .. 0.88
   2 ?   -2.7   0.1       1.5   2.6e+03     253     278 ..     141     165 ..     138     194 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.3e-06
                 EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase  4 ilvgGKGGVGKttvsaatavklsekgkkvllistD 38
                 + +g KGG GKtt+   +a +l +kgk+v +i  D
   CCG92868.1  8 MSMGSKGGTGKTTAMLLIADWLMRKGKRVHVIEAD 42
                 66899**************************9988 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
                  TSHHHHHHHHHHHHHHHHHHHHTTTS CS
  ArsA_ATPase 253 nCeflearkkiqkkylkeieelfedl 278
                  +C++l a++ + +k +++ +++++ +
   CCG92868.1 141 SCKYLIAKNMMHSK-IQNFSDYYDSK 165
                  56666666555554.45666666544 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.8e-05      0.05       4      35 ..      15      46 ..      12      50 .. 0.92
   2 ?   -0.2   0.0       0.4   7.1e+02      98     136 ..      75     110 ..      66     114 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.8e-05
      CLP1_P  4 dsGKSTlarlLlNyalrkgrkpvyvDlDvGqs 35
                 +GK+T + l++++++rkg+++ ++++D+  s
  CCG92868.1 15 GTGKTTAMLLIADWLMRKGKRVHVIEADLENS 46
                69**************************8765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.4
      CLP1_P  98 nkkakasgliIntpGwvkglgaellleliealepdvvvv 136
                 +++a+++  iI+ p      gae+++   e++ p+v+v 
  CCG92868.1  75 EAAAENEYTIIDLP---ANSGAEIKQWWKEVITPEVLVE 110
                 34688899999999...5899999999999999999885 PP

>> LpxK  Tetraacyldisaccharide-1-P 4'-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   2.1e-05     0.037      45      71 ..      13      39 ..      11      40 .. 0.95
   2 ?   -2.5   0.1       1.2   2.1e+03      32      44 ..     110     122 ..     108     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.1e-05
                SS-HSHHHHHHHHHHHTTTS..-EEEE CS
        LpxK 45 vGGtGKTPlvialvkllqarglkvgvl 71
                 GGtGKT +++ ++++l ++g +v+v+
  CCG92868.1 13 KGGTGKTTAMLLIADWLMRKGKRVHVI 39
                5************************98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
                 --SS-EEEEEESB CS
        LpxK  32 rlpvpVivVGNit 44 
                 +l+v Vi VG it
  CCG92868.1 110 ELKVDVIAVGSIT 122
                 67899*****998 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.1e-05     0.073      15      74 ..      15      68 ..      13      85 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.1e-05
      AAA_22 15 GtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerls 74
                GtGKTt +  ++++l +    + +r++v++ +l +s++   + +++   l+l+  +   +
  CCG92868.1 15 GTGKTTAMLLIADWLMR----KGKRVHVIEADLENSGKAGGISHWFNDCLKLDIRS--PR 68
                9**************53....348********************999988887777..44 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.6e-05     0.047       4      39 ..       7      43 ..       4      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.6e-05
                EEEEESTT.SSHHHHHHHHHHHHHHTTS-EEEEEEST CS
       SRP54  4 illvGlqG.aGKTttlaKLaallkkegkkvllvaaDt 39
                ++ +G +G +GKTt++  +a++l+++gk+v ++ aD 
  CCG92868.1  7 FMSMGSKGgTGKTTAMLLIADWLMRKGKRVHVIEADL 43
                5667777559***********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1643.06
//
Query:       CCG92869.1  [L=74]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 532.71
//
Query:       CCG92870.1  [L=174]
Description: RNA polymerase sigma-70 factor, ECF subfamily (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-13   48.2   0.0    1.1e-12   47.4   0.0    1.4  1  Sigma70_r4_2  Sigma-70, region 4
    4.2e-06   26.4   1.0    6.5e-06   25.8   1.0    1.3  1  Sigma70_r2    Sigma-70 region 2
    2.9e-05   23.5   0.0    5.4e-05   22.6   0.0    1.5  1  Sigma70_r4    Sigma-70, region 4
     0.0072   16.2   0.3      0.016   15.1   0.1    1.7  2  PH_14         PH domain
  ------ inclusion threshold ------
        0.1   12.8   2.9       0.57   10.4   0.0    2.6  2  UPF0122       Putative helix-turn-helix protein, YlxM / p13 l


Domain annotation for each model (and alignments):
>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0     3e-16   1.1e-12       5      54 .]     105     154 ..     102     154 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 3e-16
                   HHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   5 realaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                    e+l +  e +r ++ l+y+++lsy +IA++l+++ gtV sr++R++k L
    CCG92870.1 105 KECLMKIDEPYRIALWLYYMDELSYLDIAAILNVPIGTVMSRIFRGKKLL 154
                   689********************************************976 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   1.0   1.8e-09   6.5e-06       2      70 ..      10      76 ..       9      77 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.8e-09
                HHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2  2 verylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70
                ve+++  v+r+a +l+++   a Dl+Q +f+ l+ +  + + + + + + wl+++  +++++  +++ r
  CCG92870.1 10 VEAHYVDVYRFAISLCRQVDKACDLTQQTFVLLYTNKNKIK-DDS-RIRNWLFTTLYRLFLRSKKREER 76
                799***********************************999.777.9***************9999987 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.5e-08   5.4e-05      10      49 ..     116     155 ..     107     156 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.5e-08
                 HHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4  10 revlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 r  l l++ ++l++ +I+++l+++ ++V ++++r+ + LR
  CCG92870.1 116 RIALWLYYMDELSYLDIAAILNVPIGTVMSRIFRGKKLLR 155
                 5567799****************************99998 PP

>> PH_14  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.62   2.2e+03      45      53 ..      31      39 ..       5      63 .. 0.51
   2 !   15.1   0.1   4.5e-06     0.016      18      84 ..     100     166 ..      82     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.62
       PH_14 45 eievleias 53
                  ++ + + 
  CCG92870.1 31 ACDLTQQTF 39
                333333222 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 4.5e-06
       PH_14  18 estlveplvllkvDkkGfflywksqnkeievleiasirdiRlGk.lakipKdeKlrevlsveksedsl 84 
                 +s  v++ +l+k+D+   +  w +   e + l+ia i ++ +G+ +++i + +Kl   l +ek + ++
  CCG92870.1 100 DSQFVKE-CLMKIDEPYRIALWLYYMDELSYLDIAAILNVPIGTvMSRIFRGKKLLRDLILEKRKRKV 166
                 5677788.********99*************************8257899999999888777766665 PP

>> UPF0122  Putative helix-turn-helix protein, YlxM / p13 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.1       0.1   3.6e+02      22      96 ..       6      75 ..       1      80 [. 0.59
   2 ?   10.4   0.0   0.00016      0.57      26      64 ..     119     157 ..     102     172 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.1
     UPF0122 22 qanylelyyadDlSlsEiAeefnvsrqavydnikrtekllekyEekLkllekykkreellekikdkllkqkelek 96
                 ++y+e +y d + ++ i    +v +    d  ++t  +++ y +k k+ ++ + r+ l++ +    l++k+ e+
  CCG92870.1  6 FKEYVEAHYVDVYRFA-ISLCRQVDKAC--DLTQQT--FVLLYTNKNKIKDDSRIRNWLFTTLYRLFLRSKKREE 75
                5566666666655554.44444444432..333333..4455778888888888888888888777777776665 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00016
     UPF0122  26 lelyyadDlSlsEiAeefnvsrqavydnikrteklleky 64 
                 l lyy d+lS  +iA   nv   +v   i r +kll ++
  CCG92870.1 119 LWLYYMDELSYLDIAAILNVPIGTVMSRIFRGKKLLRDL 157
                 569*******************************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1238.96
//
Query:       CCG92871.1  [L=127]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1023  (0.0570584); expected 358.6 (0.02)
Passed bias filter:                      752  (0.0419432); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 967.65
//
Query:       CCG92872.1  [L=68]
Description: hypothetical protein MFUM_820006 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 517.80
//
Query:       CCG92873.1  [L=454]
Description: Amino acid transporter [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-58  197.4  43.4    5.2e-58  196.9  43.4    1.2  1  AA_permease_2   Amino acid permease
    2.4e-39  135.3  44.6    4.4e-39  134.4  44.6    1.4  1  AA_permease     Amino acid permease
    8.1e-07   28.2  17.4    8.1e-07   28.2  17.4    2.9  2  Spore_permease  Spore germination protein
    2.9e-06   27.2   7.0    2.9e-06   27.2   7.0    5.1  6  AA_permease_C   C-terminus of AA_permease
  ------ inclusion threshold ------
        3.1    7.8   3.9        2.9    7.9   0.3    2.4  2  DUF4574         Ubiquinol-cytochrome-c reductase complex asse


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9  43.4   1.4e-61   5.2e-58       2     402 ..      17     418 ..      16     442 .. 0.87

  Alignments for each domain:
  == domain 1  score: 196.9 bits;  conditional E-value: 1.4e-61
  AA_permease_2   2 sllsafalvigsvigsgifvkn...laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlas 94 
                    + +++f+l +g++igsgifv +   +a  +gpal +++++a +++ l  ++ yaE++s++ + g +y+y+++++g++++++++w++ +ay+++ a+
     CCG92873.1  17 NAFDLFLLGVGAIIGSGIFVLTgvaAAREAGPALSISFVFAGIVC-LFTAFSYAEFASVIHSAGSAYTYAYKMIGRFAGWITGWCLILAYLLTGAV 111
                    67899***************998655666****999999988887.89************************************************ PP

  AA_permease_2  95 ilsvaasyllnalgp.......dlqgn...twltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetd 180
                    +++   +y++ +l+        ++ +       + + a++i+ l  l+ ++g kesa+++ +++ lk+l +++++i    +++++++ +s   +++
     CCG92873.1 112 VSIGWSAYMVDLLHAlgipfssKFAHApseGGVMNVPAMGIVFLMSLLLSKGAKESAWFNHFIVGLKLL-VILLFI----FIASRHIDPS---NWT 199
                    ********977765555567775555444433556666778888889999******************5.544444....5556666663...499 PP

  AA_permease_2 181 tffpngwpgvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvai 274
                     f+p gw+gv++g + +++++ Gf++++  +ee+k+  kd+p++i+ +l+++++ly+lv + ++gvv+   +++ ++    +a  + +vg   +a+
     CCG92873.1 200 PFMPFGWKGVMGGAAFIFFAYLGFDAVSTTAEEAKNpgKDLPLGIIGSLVFCTFLYILVGLMLTGVVSYRMLDVKDP----VAFALIQVGEHLAAS 291
                    9**********************************9999**********************************8776....66777788999**** PP

  AA_permease_2 275 ivvilialsllgaintavigssrvlealardgvlPrffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliiga 369
                    iv+i++  ++  a++  ++g+sr+++a++rd++lP+f+ k + kf++p+r+i  +  +  +l+ ++       ++++++++++g++  ++++++++
     CCG92873.1 292 IVSIGALGGITSALLVNMYGQSRIFFAMSRDRFLPSFLEKLHpKFNTPYRIILGSGFIMALLSGFT------PIQTVAELTNVGALTAFIMVSVSV 381
                    ****************************************************99998865544333......369********************* PP

  AA_permease_2 370 lilrkkrphl....krpgkilvaiigalfllfllval 402
                    l+ rkk p+l    + pg+++++i+++++++fl++ l
     CCG92873.1 382 LVMRKKYPELvapfRAPGMPWTGILSIVSCFFLIAHL 418
                    ********9976644499999************9654 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4  44.6   1.2e-42   4.4e-39       2     430 ..      21     419 ..      20     449 .. 0.84

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 1.2e-42
  AA_permease   2 vlvialggviGtglfvglgvvl.sqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  +++  +g +iG g+fv +gv++ ++aGp ++ +++++ag+v ++++ s +e+a+ + ++g++ytya + +g+ +G+ +G+       + la  lt+a+
   CCG92873.1  21 LFLLGVGAIIGSGIFVLTGVAAaREAGP-ALSISFVFAGIVCLFTAFSYAEFASVIHSAGSAYTYAYKMIGRFAGWITGWC------LILAYLLTGAV 111
                  567889*************975278999.677*************************************************......88888888888 PP

  AA_permease  99 iliqfwelvtdlpkawvt................gavflvvlliinlvgvkvygeaefilalikiiaiiafiivg.iillaggkpnkgagfrflgdng 179
                    i++  ++ dl+ a ++                 +  ++++++++l+  k+  e + +++ +++   + +i+++ +i +   +p++           
   CCG92873.1 112 VSIGWSAYMVDLLHALGIpfsskfahapseggvmNVPAMGIVFLMSLLLSKGAKE-SAWFNHFIVGLKLLVILLFiFIASRHIDPSNW---------- 198
                  89999999888887777789999999****9888444566666666666666666.55555555555444444443444555555555.......... PP

  AA_permease 180 sifknnlppgfakeeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfv 277
                  +     + p          k++++++++++fa+ G+ +v ++a+E+k+P k++P +i+  ++  t++Y+l+ l+++ +v++ +l++         p+ 
   CCG92873.1 199 T----PFMPF-------GWKGVMGGAAFIFFAYLGFDAVSTTAEEAKNPGKDLPLGIIGSLVFCTFLYILVGLMLTGVVSYRMLDVKD-------PVA 278
                  3....34444.......399***************************************************************99999.......888 PP

  AA_permease 278 ifikesgvsvlaplinaviltaalssansslysasRvlyslakdglaPkvlkk.vskrgvPlraillsmiisllalllaslnlaapivfnfllaisal 374
                   ++   g  ++a+++ ++ l+ ++s+++  +y  sR+++++++d+ +P++l+k + k + P+r il     ++++ ll++++++     + +  ++ +
   CCG92873.1 279 FALIQVGEHLAASIVSIGALGGITSALLVNMYGQSRIFFAMSRDRFLPSFLEKlHPKFNTPYRIILG---SGFIMALLSGFTPI-----QTVAELTNV 368
                  999999******************************************777662689*****96654...466777789*****.....566677888 PP

  AA_permease 375 iglivwlliilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillila 430
                   +l  ++++++s l++Rk+  y +     ++f+a+++p++ il ++++ +++  l+
   CCG92873.1 369 GALTAFIMVSVSVLVMRKK--YPEL---VAPFRAPGMPWTGILSIVSCFFLIAHLN 419
                  8899999************..5555...68***************99998876655 PP

>> Spore_permease  Spore germination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2  17.4   2.3e-10   8.1e-07       2     239 ..      16     271 ..      15     316 .. 0.81
   2 ?   -4.5   5.7       1.9   6.9e+03      86     153 ..     371     437 ..     342     444 .. 0.62

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 2.3e-10
  Spore_permease   2 istkqlfvlivsfqlGvgiltlprsvaeqa.tpdgWisvllagiiililvllmlkllk.kfpektliellkkilgkwLGsllsilfilyFlllaa 94 
                     ++++ lf l v +++G+gi +l +++a+++ +p   is ++agi+ l+ +  + ++ +  ++  + + +  k++g++ G++ +  +il +ll+ a
      CCG92873.1  16 LNAFDLFLLGVGAIIGSGIFVLTGVAAAREaGPALSISFVFAGIVCLFTAFSYAEFASvIHSAGSAYTYAYKMIGRFAGWITGWCLILAYLLTGA 110
                     677889999******************9999************************9882467899*****************9777776666655 PP

  Spore_permease  95 fel....Refseliqvflle......dtpl.....wiiilllllvilYlvvkGieslareflfiivilliilllillfslklaeiknlrPvlgng 174
                     ++       +++l++   ++      + p+      +  + +++++ +l++kG ++ a  + fi+   l+++ll++++ ++++++ n +P +  g
      CCG92873.1 111 VVSigwsAYMVDLLHALGIPfsskfaHAPSeggvmNVPAMGIVFLMSLLLSKGAKESAWFNHFIVGLKLLVILLFIFIASRHIDPSNWTPFMPFG 205
                     5532333788999998766511111144432221123457789999************8666777677888888888899*************** PP

  Spore_permease 175 ikpvlkslkttslsflgveillllvpflkdkkkvkkaallgvl.istllyllttlivilvlsveql 239
                     +k v+ ++  + +++lg+  +    +  k++ k +   ++g l + t+ly+l+ l+  +v s   l
      CCG92873.1 206 WKGVMGGAAFIFFAYLGFDAVSTTAEEAKNPGKDLPLGIIGSLvFCTFLYILVGLMLTGVVSYRML 271
                     *******************99999999999999999988875516789999999998888876655 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 1.9
  Spore_permease  86 ilyFlllaafel...RefseliqvflledtplwiiilllllvilYlvvkGieslareflfiivilliilll 153
                     ++ F+++++++l   +++ el+  f  + +p   i+    +v+ + ++  +++++ +++f+   ++ +++ 
      CCG92873.1 371 LTAFIMVSVSVLvmrKKYPELVAPFRAPGMPWTGILS---IVSCFFLIAHLNKIV-LMAFVGWLFIGFVMY 437
                     5567777666553334577777777777777655543...344444455566666.455554444444444 PP

>> AA_permease_C  C-terminus of AA_permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.11   4.1e+02      20      48 ..      12      40 ..      11      43 .. 0.85
   2 ?   -3.3   0.8       2.9     1e+04      27      43 ..     103     119 ..      96     122 .. 0.58
   3 ?   -1.1   0.3      0.56     2e+03       9      25 ..     147     163 ..     146     192 .. 0.52
   4 ?    0.2   0.2      0.22   7.9e+02      22      48 ..     246     273 ..     243     276 .. 0.74
   5 ?   -3.4   0.2       2.9   1.1e+04      27      38 ..     372     383 ..     370     385 .. 0.71
   6 !   27.2   7.0   8.2e-10   2.9e-06       1      46 [.     395     440 ..     395     443 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.11
  AA_permease_C 20 LmlqLdsltwirfgvwmliglliYflYgi 48
                   L+ +L++  + + gv  +ig  i++l g+
     CCG92873.1 12 LVKSLNAFDLFLLGVGAIIGSGIFVLTGV 40
                   566899999999*********99998765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.9
  AA_permease_C  27 ltwirfgvwmliglliY 43 
                    l++++ g+++ ig   Y
     CCG92873.1 103 LAYLLTGAVVSIGWSAY 119
                    34555555566665555 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.56
  AA_permease_C   9 lPalsIlvNiyLmlqLd 25 
                    +Pa++I++ + L+l+ +
     CCG92873.1 147 VPAMGIVFLMSLLLSKG 163
                    67777766555555433 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.22
  AA_permease_C  22 lqLdsltwirfgvwmli.glliYflYgi 48 
                     +L + t++ ++v +++ g++ Y + ++
     CCG92873.1 246 GSLVFCTFLYILVGLMLtGVVSYRMLDV 273
                    6778888888888766559999987666 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 2.9
  AA_permease_C  27 ltwirfgvwmli 38 
                    +++i+++v +l+
     CCG92873.1 372 TAFIMVSVSVLV 383
                    578888887776 PP

  == domain 6  score: 27.2 bits;  conditional E-value: 8.2e-10
  AA_permease_C   1 FkvPlvPflPalsIlvNiyLmlqLdsltwirfgvwmliglliYflY 46 
                    F++P +P+  +lsI+  ++L+++L+   ++ f+ w++ig+++Y++Y
     CCG92873.1 395 FRAPGMPWTGILSIVSCFFLIAHLNKIVLMAFVGWLFIGFVMYLFY 440
                    9********************************************9 PP

>> DUF4574  Ubiquinol-cytochrome-c reductase complex assembly factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3   0.00081       2.9      11      29 ..      21      39 ..      11      46 .. 0.85
   2 ?   -0.2   0.3      0.26   9.2e+02      10      26 ..     291     307 ..     285     310 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00081
     DUF4574 11 vallgaGaGlGsaLfvLvt 29
                + llg+Ga +Gs++fvL+ 
  CCG92873.1 21 LFLLGVGAIIGSGIFVLTG 39
                579**************96 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.26
     DUF4574  10 vvallgaGaGlGsaLfv 26 
                 +++ +ga +G++saL+v
  CCG92873.1 291 SIVSIGALGGITSALLV 307
                 445568888******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 3166.66
//
Query:       CCG92874.1  [L=166]
Description: Acetyltransferase, GNAT family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-11   43.4   0.0    4.3e-11   43.1   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    9.7e-08   32.3   0.0    1.3e-07   31.9   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    4.9e-07   29.7   0.0    6.8e-07   29.3   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    6.8e-06   26.3   0.1    1.1e-05   25.7   0.1    1.3  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
      0.008   16.1   0.0      0.013   15.4   0.0    1.3  1  FR47             FR47-like protein
  ------ inclusion threshold ------
       0.01   16.0   0.0      0.016   15.3   0.0    1.2  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.4e-14   4.3e-11      17     117 .]      36     138 ..      18     138 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 1.4e-14
                     HHHHHHHHHHHHHSTTC..EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEE.EEETTEHHH CS
  Acetyltransf_1  17 edaseeefeesfsleae..gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivl.aveedndaa 108
                        s+++f +++  +++  ++++ + +g ++G   l+++    g++++  s++V++ yr++G+G a+ ++++e ar++++++i + +v ++n +a
      CCG92874.1  36 LPFSYADFLNFWNVPPPvwRYCS-CLNGIIVGGYLLKPNFIGLGNHIANASFFVAKPYRKRGIGEAMGKHAIENARKQNFQAIQFnYVVSTNYPA 129
                     33344447778888888766666.788899999988888887799**************************************555**9****** PP

                     HHHHHHTTE CS
  Acetyltransf_1 109 irlYeklGF 117
                     i+l+ klGF
      CCG92874.1 130 INLWLKLGF 138
                     ********9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   4.5e-11   1.3e-07      13      75 ..      63     139 ..      43     140 .. 0.69

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 4.5e-11
                     EEEEEEEEEEES....TCTEE..EEE-GGGTTSSHHHHHHHHTT.....SEEEEE.EEEE.THH.HHHHHHHHTTEE CS
  Acetyltransf_7  13 kivGfialslld....aeitr..laVdpeyrgkGiGraLleaae.....kgiile.qlel.nae.kaikfYeklGFe 75 
                      ivG + l+++      +i +  ++V++ yr++GiG a+ ++a+     ++++ +   ++ +++ +ai+++ klGF+
      CCG92874.1  63 IIVGGYLLKPNFiglgNHIANasFFVAKPYRKRGIGEAMGKHAIenarkQNFQAIqFNYVvSTNyPAINLWLKLGFK 139
                     45666666666676655666689*****************98222344433332222333333359**********8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.3e-10   6.8e-07      47     110 ..      76     142 ..      59     147 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2.3e-10
  Acetyltransf_10  47 elrdgshisllfVdpeyrgqGigkaLleaveeeaekdgikl..eltvnasp.yavpfYeklGFkavg 110
                      +l ++   + +fV++ yr++Gig+a+ ++++e+a+k++ +      v +++  a+++  klGFk vg
       CCG92874.1  76 GLGNHIANASFFVAKPYRKRGIGEAMGKHAIENARKQNFQAiqFNYVVSTNyPAINLWLKLGFKIVG 142
                      44444455678**************************9998863345666669**********9887 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1   3.6e-09   1.1e-05      73     143 ..      77     147 ..      56     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.6e-09
  Acetyltransf_4  73 akdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllae.iaspnensiqfhkalGFelvgifkkc 143
                       ++ a  s+++a +  +k+g+g ++ ++ ++ +++qn++ +    ++s+n ++i+++ +lGF++vg   k+
      CCG92874.1  77 LGNHIANASFFVA-KPYRKRGIGEAMGKHAIENARKQNFQAIQFNyVVSTNYPAINLWLKLGFKIVGTIPKA 147
                     56788899****9.89**************************76626899****************987665 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.4e-06     0.013      29      78 ..      88     139 ..      84     144 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.4e-06
                 E-GGG-SSSHHHHHHHHHHHHHHHS..-S-EEEEEETT-HHHHHHHHHHT-E CS
        FR47  29 vlpehrrrGlgsrlvkalakeiaer..gktvllvvvasNtpsirlyeklGfe 78 
                 v +  r+rG g  + k  +++ +++  + + + +vv +N p+i+l+ klGf+
  CCG92874.1  88 VAKPYRKRGIGEAMGKHAIENARKQnfQAIQFNYVVSTNYPAINLWLKLGFK 139
                 667789**********99999999622567799******************8 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   5.5e-06     0.016      30      60 ..      86     116 ..      76     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.5e-06
  Acetyltransf_CG  30 TeVpeelrGkGiAkkLvkaalddareeglkv 60 
                       +V + +r +Gi++++ k+a++ ar+++++ 
       CCG92874.1  86 FFVAKPYRKRGIGEAMGKHAIENARKQNFQA 116
                      68999***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1329.85
//
Query:       CCG92875.1  [L=111]
Description: hypothetical protein MFUM_820009 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.4   0.1      0.021   14.8   0.1    1.3  1  TraY      TraY domain
        4.9    7.1   8.1         95    3.0   8.1    2.1  1  PetG      Cytochrome B6-F complex subunit 5


Domain annotation for each model (and alignments):
>> TraY  TraY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   2.4e-06     0.021      24      46 ..      14      36 ..       6      39 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.4e-06
        TraY 24 KrkEAqlRLkdHLkrFpdiyese 46
                +r+EA++R  d L+r++d+ ++e
  CCG92875.1 14 RRNEARIRFLDSLQRVSDNLSKE 36
                69****************98877 PP

>> PetG  Cytochrome B6-F complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   8.1     0.011        95       5      28 ..      43      75 ..      42      78 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.011
        PetG  5 LLlGiVLGLvp.........VTlaGLFvaAYlQ 28
                LL+GiV GLv          VT +GLF+  ++Q
  CCG92875.1 43 LLIGIVTGLVLyslrwmlskVTRVGLFYYIFQQ 75
                99*******964444444447778888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 824.50
//
Query:       CCG92876.1  [L=113]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00051   20.1   9.2    0.00064   19.7   9.2    1.1  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
  ------ inclusion threshold ------
       0.75    9.4   7.0       0.86    9.2   7.0    1.1  1  PRA1             PRA1 family protein


Domain annotation for each model (and alignments):
>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   9.2   7.1e-08   0.00064      13      90 ..      20     107 ..      17     113 .] 0.77

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 7.1e-08
  Phage_holin_3_6  13 sLvrteleLakaElkeeakragsgagllgaagvlallalllllvala...lal.....a.a.lwlaalivaavllvlagvlalvglkk 90 
                      +Lv   +eL+ aE++  + ra s++ ll++ ++l+ +++l+l+++++   ++l     a +    +a++ a +++vl g ++++++k 
       CCG92876.1  20 ELVVRLIELLEAEIDYFRYRAWSLIFLLLLSLILLTFSVLSLFIGFLysiWGLyllfsAeVgKIGGAFLCASFMVVLSGFFLWMIKKI 107
                      6788889***************************************744533333333334777777777888888888888887774 PP

>> PRA1  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   7.0   9.6e-05      0.86      35     114 ..      33     109 ..      20     113 .] 0.68

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 9.6e-05
        PRA1  35 llyfrtNYlivvllvlllslltnplslivllllvlawlflyflrseplvlfgrel.sdrvvlivllvvsvlllfltgavlv 114
                 + yfr     +++l+ll  +l+    l +++ ++ +++ ly+l+s+++     ++     +  +++v+s ++l++++ +++
  CCG92876.1  33 IDYFRYRAWSLIFLLLLSLILLTFSVLSLFIGFLYSIWGLYLLFSAEV----GKIgGAFLCASFMVVLSGFFLWMIKKIAN 109
                 567766543333333333333344444455555677778889999999....77767888999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 836.41
//
Query:       CCG92877.1  [L=57]
Description: hypothetical protein MFUM_820011 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       150  (0.00836633); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 405.10
//
Query:       CCG92878.1  [L=251]
Description: Short-chain alcohol dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-48  163.7   0.5    3.9e-48  163.5   0.5    1.1  1  adh_short        short chain dehydrogenase
    2.1e-36  125.6   0.1    2.6e-36  125.3   0.1    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
      4e-15   56.2   0.5      5e-15   55.9   0.5    1.1  1  KR               KR domain
     0.0026   17.2   0.1     0.0035   16.8   0.1    1.1  1  DUF1776          Fungal family of unknown function (DUF1776)
  ------ inclusion threshold ------
      0.061   13.1   1.3        0.2   11.5   1.6    1.7  2  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   0.5   1.1e-51   3.9e-48       1     193 [.       9     202 ..       9     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 1.1e-51
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 k+++vtGassGIG+a+a +la++Ga++vv +r+ e+l+ +++++++ ga+alai+++v++ ++v+ lv  a+kk+g++d++vn AGi   +   ++  +
  CCG92878.1   9 KTAIVTGASSGIGYATALALASAGANLVVGARRMERLNSLVEKIEAMGASALAIRTNVRELSDVDSLVLGAKKKFGGVDIFVNSAGIMPLSLLRKMRVA 107
                 79************************************************************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT.EEEEEEEESSBSSHHHHHHCTH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptg.irvnavaPGlvdTdmakelrek 193
                 ew ++i++N++g+++++ a+lp++l+q+ G+ v+vsS+a+k+  +g a YsA   a++ l++ +++el+p   i+++ v +G+v+T++  +++++
  CCG92878.1 108 EWLNMIDINFKGAVHVVSAILPTFLEQKYGHLVFVSSIASKKIIPGSAIYSACSSAIRTLAEGIRMELSPFDqIKITLVETGYVQTELFDSIEDE 202
                 **********************************************************************888***************9998876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.3   0.1   7.3e-40   2.6e-36       1     213 [.      15     229 ..      15     235 .. 0.92

  Alignments for each domain:
  == domain 1  score: 125.3 bits;  conditional E-value: 7.3e-40
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga sgIG+a+A ala++Ga++v+  ++ e+ ++ ve++++ + ++ +++++V++ ++v++lv  +++kfg++Di+vn+agi+p   + + ++  +e+
    CCG92878.1  15 GASSGIGYATALALASAGANLVVGARRMERlNSLVEKIEAMGASAlAIRTNVRELSDVDSLVLGAKKKFGGVDIFVNSAGIMPL--SLLRKMRVAEW 109
                   899*******************9999999978888888886666655*************************************..99999****** PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG.GTEEEEEEEE--BHCTGGGGSTTHHHHH CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgp.kgiRvNavspgpikTlaasgikgfdell 189
                    +++d+n++++++++ a+lp  ++++ g +v +ss+++++++p+ ++y+a+  a+  l+  + +el p ++i++  v  g+++T++ ++i+  +e++
    CCG92878.1 110 LNMIDINFKGAVHVVSAILPtFLEQKyGHLVFVSSIASKKIIPGSAIYSACSSAIRTLAEGIRMELSPfDQIKITLVETGYVQTELFDSIE-DEEIK 205
                   ********************6444447*****************************************9*********************8.57777 PP

                   HHHHHHSTTSS-B-HHHHHHHHHH CS
  adh_short_C2 190 eelearaplgrlgtpeevaeaalf 213
                   + +  +       ++eeva+a+l+
    CCG92878.1 206 RSIIGELGTISPLKAEEVASAILY 229
                   777777777777899******998 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.5   1.4e-18     5e-15       3     166 ..      11     174 ..       9     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 1.4e-18
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                  ++tG+  g+G ++a  la+ ga +lv+ +R+    e+ ++l++++ea+ga+  +++  v + ++v +l+  +k++++ +   +++Ag++  +ll +m 
  CCG92878.1  11 AIVTGASSGIGYATALALASAGA-NLVVGARR---MERLNSLVEKIEAMGASALAIRTNVRELSDVDSLVLGAKKKFGGVDIFVNSAGIMPLSLLRKMR 105
                 69********************8.57778888...3555679********************************************************* PP

                 HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsq 166
                  +++ +++   +kGa ++  ++ +    ++  ++v++SSia+    +g a Y+a ++ + +lae  r +
  CCG92878.1 106 VAEWLNMIDINFKGAVHVVSAILPtfleQKYGHLVFVSSIASKKIIPGSAIYSACSSAIRTLAEGIRME 174
                 ****************9998877767768999*****************************99977665 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   9.8e-07    0.0035     104     200 ..      97     191 ..      85     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.8e-07
     DUF1776 104 ptgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrp.hnidvtqikLGnl 200
                 p + + ++ +++w + +  ++   + +++a+lp + +   qk   +v+  si s+  +p +a+ +  ssa+++l+e ++ el+p  +i++t +  G +
  CCG92878.1  97 PLSLLRKMRVAEWLNMIDINFKGAVHVVSAILPTFLE---QKYGHLVFVSSIASKKIIPGSAIYSACSSAIRTLAEGIRMELSPfDQIKITLVETGYV 191
                 6777889999*************************98...99*****************************************625788888877765 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.6   5.5e-05       0.2      40      63 ..       8      31 ..       1      40 [. 0.81
   2 ?   -3.3   0.0       2.2   7.9e+03      43      53 ..      74      84 ..      63      84 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.5e-05
                     -SEEEEESTSSHHHHHHHHHHHHS CS
  Eno-Rase_NADH_b 40 pkkvLviGaStGYGLAsriaaafg 63
                      k+++v GaS+G G A+ +a+a +
       CCG92878.1  8 RKTAIVTGASSGIGYATALALASA 31
                     699*****************9976 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.2
                     EEEESTSSHHH CS
  Eno-Rase_NADH_b 43 vLviGaStGYG 53
                      Lv+Ga   +G
       CCG92878.1 74 SLVLGAKKKFG 84
                     48999987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1788.37
//
Query:       CCG92879.1  [L=350]
Description: Mannose-1-phosphate guanylyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-33  116.8   0.0    2.2e-33  115.9   0.0    1.4  2  NTP_transferase  Nucleotidyl transferase
    1.1e-07   32.3   0.0    1.8e-07   31.7   0.0    1.3  1  NTP_transf_3     MobA-like NTP transferase domain
    1.4e-05   25.0   0.0    2.7e-05   24.1   0.0    1.4  1  MannoseP_isomer  Mannose-6-phosphate isomerase


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0   3.7e-37   2.2e-33       4     246 ..       8     284 ..       6     286 .. 0.86
   2 ?   -3.5   0.0         1     6e+03      29      64 ..     306     341 ..     298     345 .. 0.61

  Alignments for each domain:
  == domain 1  score: 115.9 bits;  conditional E-value: 3.7e-37
                      EE--S--GGGTTCCTTSSGGGSEETTET.ETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTHHH CS
  NTP_transferase   4 ILaGGsGtRLwPLtrtlakklvpvlgke.rliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaael 96 
                      ILaGGsG+R+wP++r+  +k +    ++ +l++ t+ r+     ee +++l++++   + +  k+ s f   ++i++epe+++tA A +la  +
       CCG92879.1   8 ILAGGSGERFWPVSRRNTPKHLISFFSDkTLLEETIDRVKGFVPEENLYILSNKD--QLSSITKRLSSFP-LEKILFEPEKRDTAAASTLATAI 98 
                      9**************99988887777777************99999999988544..5566667777777.679******************** PP

                      HTTSSE..EEEEETTEEEEST......THHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEEC.......TTS....BEEEEECS-SSHSHCS CS
  NTP_transferase  97 ledeksdelvlvLggDhlikd......ayeeavkkaiekaakgtvtfgivpveeateyGviead.......eeg....rverfvEKPkeakase 173
                      +++++++++v+ L++D  ik+      ++   v + +e+++  +vtf i p+ +at++G+ + d       + g     v+rfvEKP+ + a  
       CCG92879.1  99 AARHSKEATVVLLPADSKIKNreifrdQLLSSVLFTQETKS--IVTFSILPNYPATGFGYLKLDktncfikN-GekffPVIRFVEKPSVDVARR 189
                      *****************999988644344444444455555..*********************88888851.245689*************** PP

                      EECCSEEEEETTHHHHHHH.CCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE.....................-EEEXSSHHHHHHHHHHH CS
  NTP_transferase 174 lassGiYvfnsevllflak.dleelkrgedeitdilpkaleegkvalaflfkdae.....................yWsDvGtldslleanekl 245
                      ++++G   +ns+++   +k ++ee +r +  ++ ++ ++le+ ++  +++ +  +                      W+D+G++ s+ e  +k+
       CCG92879.1 190 YIKEGDCGWNSGMFIWTVKvFIEETQRWAFPFYRFILEYLEKPSEWESAFISLPKisidyalmektdkifalearfDWNDLGSWISVAEYLDKD 283
                      ****************************9999999999999877766655555457999***************************99987777 PP

                      H CS
  NTP_transferase 246 a 246
                      +
       CCG92879.1 284 E 284
                      6 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1
                      TETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHH CS
  NTP_transferase  29 gkerliqatlsrlansgieeiivvltqehsflveeq 64 
                      +++++    ++ l+  + e+ i+v+ +++ +++++ 
       CCG92879.1 306 DSKPIALCGVNDLVVIESEQAILVCHKDKIHELKKL 341
                      444666666666666666667777777777776665 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0     3e-11   1.8e-07       2      96 ..       7     115 ..       6     141 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 3e-11
                   EEEEESS-TTT......TTTHHHHCC.CCCCHHHHHHHHHCTT.-.CEEEEECSHC...HHHHHHTTCTS-.EEE-TTS.S-SHHHHHHHHHHH.H. CS
  NTP_transf_3   2 viLAGGrSsRm......ggdKallpl.ggkpllervldalraagv.devvvvggde...evlaalarlgvr.vvededp.gkgplaslaaalra.aa 84 
                    iLAGG + R+      +++K l+ +  +k+lle ++d+++     +++++  + +   +++++l +++++ ++ ++++ ++  +++la+a++a  +
    CCG92879.1   7 FILAGGSGERFwpvsrrNTPKHLISFfSDKTLLEETIDRVKGFVPeENLYILSNKDqlsSITKRLSSFPLEkILFEPEKrDTAAASTLATAIAArHS 103
                   7**********88886667************************334799999999722245556666676534555555378888889999998655 PP

                   SSSCEEEEETT- CS
  NTP_transf_3  85 dadavlvlacDm 96 
                   ++  v++l++D 
    CCG92879.1 104 KEATVVLLPADS 115
                   889999999997 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   4.5e-09   2.7e-05       2      33 ..     314     345 ..     313     349 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 4.5e-09
  MannoseP_isomer   2 Gvedlvvvetkdavlvadkdkvqdvkkvveel 33 
                      Gv+dlvv+e++ a+lv +kdk++++kk++e+l
       CCG92879.1 314 GVNDLVVIESEQAILVCHKDKIHELKKLYEKL 345
                      9****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2669.80
//
Query:       CCG92880.1  [L=866]
Description: Endopolygalacturonase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-20   71.8   0.0    1.7e-18   67.2   0.0    2.8  3  Pectate_lyase_3  Pectate lyase superfamily protein
  ------ inclusion threshold ------
      0.033   14.1   0.0        3.3    7.5   0.0    3.0  3  Beta_helix       Right handed beta helix region
      0.063   13.3   0.0       0.14   12.2   0.0    1.5  1  DUF2808          Protein of unknown function (DUF2808)
       0.18   11.5   0.2       0.42   10.3   0.2    1.6  1  End_N_terminal   N terminal extension of bacteriophage endosi


Domain annotation for each model (and alignments):
>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       2.8   1.3e+04      45      63 ..      31      49 ..      30      51 .. 0.85
   2 !   67.2   0.0   3.8e-22   1.7e-18       1     113 [.     231     343 ..     231     361 .. 0.82
   3 ?    1.2   0.0     0.063   2.8e+02      80     196 ..     708     858 ..     700     866 .] 0.49

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 2.8
                     EESS-EEE-SSEEEEES-T CS
  Pectate_lyase_3 45 lvsspiilksgvqLvGdgn 63
                      +s+p+  ++gv+L+G g 
       CCG92880.1 31 WISEPVDPADGVVLYGGGF 49
                     68999999********885 PP

  == domain 2  score: 67.2 bits;  conditional E-value: 3.8e-22
                      SEEGGGGT---EEEEE-HHHHHHHH......HTSS-EEE-SEEEEESS-EEE-SSEEEEES-TTTEEEEE-TT-.SS--SEEES-TTT-..-EE CS
  Pectate_lyase_3   1 frnVkdyGakgDGvtDdtaaiqkaiscasatttgavVYfPaGtYlvsspiilksgvqLvGdgngrpvlkaaaaf.vgaglidgdpyvsggseal 93 
                      ++nVkdyGakg G tDd+ a++ka+ +a++ ++g++VY+PaGtY v+++  ++ ++ L Gdg++ + lk  +++  g+g + ++ + s+g+  l
       CCG92880.1 231 IFNVKDYGAKGNGLTDDSEALRKAL-QAADANGGGIVYIPAGTYKVRGSFFIPPKTLLEGDGMDFSWLKWPDNApLGEGDFVSTAFFSSGQFSL 323
                      68***********************.999999****************************************9996666666666665544455 PP

                      EEEEEEEEEGGGG-SS---S CS
  Pectate_lyase_3  94 iatnnfyrqirnlkiditav 113
                      ++ +  +r+++++ +d++a+
       CCG92880.1 324 EELSISIRNAKRVLVDSSAL 343
                      55555566677777777776 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.063
                      EEES-TTT-..-EEEEEEEEEEEGGGG-SS---S..........SEEE.......ES-EEEEEEE.EEEES-SSEEE-SSS.......---TT- CS
  Pectate_lyase_3  80 idgdpyvsggsealiatnnfyrqirnlkiditav..........apga.......tgihwqtaqa.tslenvefemseasg.......tkhqgi 148
                      +dg++++++  +++ia++ f+ q+ n ++d+             +           ++    + + t+l+nv fe+  +           h +i
       CCG92880.1 708 FDGNQVKRT--QGIIASSGFFIQWLNNVLDVAVSypvvenkdplD--QeirslnfGALGFLIDPNmTNLSNVPFEVIRGGIlrsnrlaFGH-QI 796
                      555555544..5666666666666666666443334433322221..02222222112222222203466666655555544443332122.34 PP

                      --SS--E............EEE.ES-EEES-SS-SEEE.S..-EEEEEES-EEE-S--SEEE-T CS
  Pectate_lyase_3 149 fiengsg............gfl.ndlvfsglgdigiav.g..nqqftvrnitfnnattgievlw 196
                      ++  gs+            + l ++ +f++ g  gi++ +  +q+  +rni f   ++ i++++
       CCG92880.1 797 IVGLGSEegefpaqallakDLLiDHNWFEH-GLLGIELdKgiRQALLMRNIFFDV-KEPIKIKE 858
                      444444444445544444433357777877.888888854788888888887765.55555555 PP

>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00073       3.3      70     138 ..     417     458 ..     327     488 .. 0.63
   2 ?    2.8   0.0     0.021        93      72     126 ..     675     732 ..     613     748 .. 0.75
   3 ?   -1.9   0.0      0.61   2.7e+03     101     135 ..     815     848 ..     787     865 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00073
                 EEE-TT--S--EEES-EEES-SS-SEE-TT-S--EEES-EEESTT--SEE---TT---EEES-EEES-S CS
  Beta_helix  70 ggialfgasnnlienneitdnggsGiylnyssnntienNiidnnagsGividdsssnvtvtnNtitnnk 138
                 + +al   sn+ i+++ei+  ++  ++l++    +i+ N ++n                         +
  CCG92880.1 417 YSVALGSLSNVEISGCEIIGLRQRAVHLKN---GRITQNSFYN------------------------PM 458
                 333333344444444444444444443332...3444444433........................33 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.021
                 E-TT--S--EEES-EEES-SS-SEE-T.T-S--EEES-EEESTT....--SEE---TT-- CS
  Beta_helix  72 ialfgasnnlienneitdnggsGiyln.yssnntienNiidnna....gsGividdsssn 126
                 + +++ ++ +++ n   d++   + l+  ++++++ +N+++  +     sG++i++ + n
  CCG92880.1 675 LFYQWEGKAIFYENQSQDCRF-LFPLSgLAYDVIFDGNQVKRTQgiiaSSGFFIQWLN-N 732
                 566677888888899999866.7778745***********999988888888888777.3 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.61
                 S--EEES-EEESTT--SEE---TT---EEES-EEE CS
  Beta_helix 101 snntienNiidnnagsGividdsssnvtvtnNtit 135
                 +++ i +N++++    Gi++d +  +     N+++
  CCG92880.1 815 KDLLIDHNWFEHGL-LGIELDKGIRQALLMRNIFF 848
                 45556666666665.55555555533334444444 PP

>> DUF2808  Protein of unknown function (DUF2808)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     3e-05      0.14      22     112 ..     509     605 ..     497     610 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3e-05
     DUF2808  22 rwgarYyltievpkdagealakltisqpdfvedikfdl.........kkveafvgt.....trnkgeklpleevvwdkenrtieitfdePippgktvtv 106
                 r    ++l +++ k+ +++l+ ++++   ++++++f+                  +      +++++++ +  +v+ +++++i+i+  +P p +++vt+
  CCG92880.1 509 RKALSFNLNFPMGKKRETPLKHFSLTANLSGNEMSFKEniltkdslvG-------QeivviGHSSKREFFV-RKVIANSEQKITIDRGTPLPVNQEVTI 599
                 334667888888888889*******99997789999986655444432.......2355554566778999.556699999****************** PP

     DUF2808 107 vlknvr 112
                  + ++ 
  CCG92880.1 600 YFLPWD 605
                 998876 PP

>> End_N_terminal  N terminal extension of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   9.4e-05      0.42       1      35 [.     239     275 ..     239     278 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.4e-05
                     ---EEEEE-HHHHHHHHHHS..-TTS-EE-TT-EEEE CS
  End_N_terminal   1 akGDGvtdDtdalsevlaaa..pvgkkidGrGltykv 35 
                     akG+G tdD +al ++l+aa   +g ++     tykv
      CCG92880.1 239 AKGNGLTDDSEALRKALQAAdaNGGGIVYIPAGTYKV 275
                     89***************77511445555556667776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 5879.30
//
Query:       CCG92881.1  [L=381]
Description: Glycine/D-amino acid oxidase (Deaminating) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-44  151.3   0.0    5.7e-44  151.1   0.0    1.0  1  DAO            FAD dependent oxidoreductase
    6.9e-06   25.4   0.5    1.1e-05   24.7   0.5    1.3  1  FAD_binding_2  FAD binding domain
    1.7e-05   24.2   1.2       0.12   11.6   0.8    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    0.00011   22.4   0.3     0.0002   21.5   0.3    1.4  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00032   20.0   0.2    0.00047   19.5   0.2    1.2  1  FAD_binding_3  FAD binding domain
     0.0021   17.4   0.0      0.028   13.7   0.1    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0023   17.0   0.0       0.34    9.9   0.1    2.2  2  Lycopene_cycl  Lycopene cyclase protein
     0.0052   16.1   0.2     0.0079   15.5   0.2    1.3  1  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.044   12.9   0.2       0.17   11.0   0.3    1.8  2  GIDA           Glucose inhibited division protein A
      0.052   12.1   0.1        2.9    6.3   0.0    2.1  2  Mqo            Malate:quinone oxidoreductase (Mqo)
      0.054   12.2   0.4       0.31    9.7   0.4    1.9  2  HI0933_like    HI0933-like protein
       0.14   11.4   0.1       0.32   10.3   0.1    1.7  1  FAD_oxidored   FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.1   0.0   3.8e-47   5.7e-44       1     350 [.       5     348 ..       5     350 .. 0.82

  Alignments for each domain:
  == domain 1  score: 151.1 bits;  conditional E-value: 3.8e-47
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHH.HHHHHHHHHHHSSTTS.EEEEEEEEEESSHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslea.leelreleeelgidid.yrrtGllslaadeee 95 
                 d ++iG+Gi+G+s+ ++La +g  V++lek++ ag +++gr++ ++++++  lp+     rl  +a  ++++   +   + i+   ++  l++a++e+ 
  CCG92881.1   5 DCLVIGAGIAGASVGFHLAIKGlsVIILEKESSAGYHSTGRSAVFFRGSHG-LPSV----RLLTQAsKQFFESPPAP-FFSIPlTTPRNALFIARKEK- 96 
                 779****************999**************************886.9965....66665525666555555.45566477799999999875. PP

                 HHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTST..TTSEE.EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEE CS
         DAO  96 lealdkllallleagldaelldaeevrelepalp..gllga.lfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gen 190
                 +e l++++++ ++a l  + + +ee++++ p l+   + g+ +++ ++  ++  kl++++++ + + G++i++++ v+++e+++   w v  +++    
  CCG92881.1  97 KEFLERWFKDNQSAHLSLRKIPSEEALQMVPVLKkeSVEGGcILESSGKDINQPKLLQGYLEGVLQSGGKIYYKAFVKRIEKQQ-TEWVV--EANdKL- 191
                 999*******9999999999***********93346888774668888999*****************************8764.45888..332122. PP

                 EEEEEEEE--GGGHHHH..HTT..CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHH CS
         DAO 191 daadavVnaaGawsdll..gll..keldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedi 285
                 ++a  ++naaGaw+d++    +  k+l   i+p r +v++++p+++     + + ++p+  + +  +y+ p+  +++l+ + + ++s + d++++e+d+
  CCG92881.1 192 FKAPLLINAAGAWADEVacL-AsiKPL--GIVPKRRTVITFDPPTN-----YSVEHWPMVLEISEEFYFKPYC-QEILASPADRTPSIPCDAKPEEADC 281
                 45577**********65342.235777..9***********99887.....4444455566778899*****9.7799999886555555579999999 PP

                 HHHHHHHHHHSGG.GCGEEEEEEEEEEE.TTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHH CS
         DAO 286 dellealrklfPq.lgdvlrkwaGlrpl.pdglpligetpgvkglylatGhsghGltlapatGklla 350
                    +++l++     ++++ rkwaGlr    d+lp+ig  p+ +g++ ++  +g+G+ ++pa+G+++a
  CCG92881.1 282 ILAIKRLEQATTIkIDKINRKWAGLRSFvEDELPVIGFDPEERGFFWVAALGGSGIETSPAVGEMAA 348
                 99999999999773588**********538********99999*********************998 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.5   7.3e-09   1.1e-05       1      39 [.       5      43 ..       5      51 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 7.3e-09
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggata 39
                   D +ViG+G+AG + +  +a +Gl+v+++eke++ g +++
     CCG92881.1  5 DCLVIGAGIAGASVGFHLAIKGLSVIILEKESSAGYHST 43
                   88*******************************999886 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.8   7.9e-05      0.12       1      31 [.       7      36 ..       7      42 .. 0.92
   2 !   10.8   0.0   0.00014      0.21      86     135 ..     156     204 ..     128     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.9e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgn 31
                 ++iGaG aG +++ +l  +gl +++ilEk++
   CCG92881.1  7 LVIGAGIAGASVGFHLAIKGL-SVIILEKES 36
                 69*******************.7******85 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00014
  Pyr_redox_3  86 YlrevaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGef 135
                  Yl+ v +s   +i ++  V++++k++++ +ve++ + ++A+ +i A+G +
   CCG92881.1 156 YLEGVLQS-GGKIYYKAFVKRIEKQQTEWVVEANDKLFKAPLLINAAGAW 204
                  77777766.457999999******************************86 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.3   1.4e-07    0.0002       1      39 [.       8      46 ..       8      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.4e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EEC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasye 39
                   ++GaG++G++   +La +g++v +lek ++ G +++ ++
     CCG92881.1  8 VIGAGIAGASVGFHLAIKGLSVIILEKESSAGYHSTGRS 46
                   8*******************************8887664 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.2   3.2e-07   0.00047       2      42 ..       4      46 ..       3      53 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.2e-07
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS..S- CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp..ra 42
                   +d l++GaG aG++ +  L+ +G +v+++ek s++ +++  r+
     CCG92881.1  4 ADCLVIGAGIAGASVGFHLAIKGLSVIILEKESSAGYHStgRS 46
                   6889*****************************9988874455 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   1.9e-05     0.028       2      33 ..       5      36 ..       4      70 .. 0.85
   2 ?    1.4   0.0       0.1   1.5e+02     195     240 ..     162     206 ..     148     237 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.9e-05
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlveleg 33
                 d++viG+G+AG ++  +la +g+ v+++e+e 
   CCG92881.1  5 DCLVIGAGIAGASVGFHLAIKGLSVIILEKES 36
                 789*************************8544 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.1
                  HTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE-S-EEES CS
                  xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 195 keGvevklgtsvkeidgngekle.vvledgeeidadlvvvavGvrps 240
                  ++G +++ ++ vk+i+++++  e vv+ + + ++a l++ a+G  ++
   CCG92881.1 162 QSGGKIYYKAFVKRIEKQQT--EwVVEANDKLFKAPLLINAAGAWAD 206
                  45668899999*****9998..7788888888*********998766 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00023      0.34       1      34 [.       5      36 ..       5      51 .. 0.88
   2 !    5.0   0.0    0.0071        11      89     142 ..     153     204 ..     140     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00023
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasp 34
                   D +viGaG Ag s+  +l  a +gl+v+++e   
     CCG92881.1  5 DCLVIGAGIAGASVGFHL--AIKGLSVIILEKES 36
                   889***************..**********8654 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0071
  Lycopene_cycl  89 lkeellerlvengvklleakvesveeeeageslvvleggrkirarlvvdargla 142
                    l+  l+  l ++g ++++a v+++e+++     vv ++++  +a+l + a g+ 
     CCG92881.1 153 LQGYLEGVLQSGGKIYYKAFVKRIEKQQT--EWVVEANDKLFKAPLLINAAGAW 204
                    566677778899**************999..77888888999*********964 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   5.3e-06    0.0079      18      55 ..       4      40 ..       1      51 [. 0.88

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.3e-06
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspGG 55
                +D +++GaG +G + ++ la k +l v+ile++ s G 
  CCG92881.1  4 ADCLVIGAGIAGASVGFHLAIK-GLSVIILEKESSAGY 40
                799*******************.*********999885 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   0.00011      0.17       1      30 [.       5      34 ..       5      60 .. 0.88
   2 ?   -0.9   0.0      0.45   6.7e+02     117     152 ..     172     205 ..     127     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLith 30
                d+ ViG+G AG    +++a +G++v+++ +
  CCG92881.1  5 DCLVIGAGIAGASVGFHLAIKGLSVIILEK 34
                789**********************99843 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.45
                 -EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-B CS
        GIDA 117 eveeliveekkvkgvvtedgetikakavviatGtfl 152
                  v+++  e+++++ vv ++++ +ka   + a+G++ 
  CCG92881.1 172 FVKRI--EKQQTEWVVEANDKLFKAPLLINAAGAWA 205
                 45666..56888889999999999999999999855 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.011        17       2      44 ..       3      43 ..       2      48 .. 0.81
   2 ?    6.3   0.0     0.002       2.9     171     223 ..     141     191 ..      88     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.011
         Mqo  2 kvdvvliGaGimsatlgvllkelepelsievlerldkvaeess 44
                ++d ++iGaGi  a++g  l      ls+ +le+ ++++  s+
  CCG92881.1  3 RADCLVIGAGIAGASVGFHLAI--KGLSVIILEKESSAGYHST 43
                6899*************98863..5678888888888777765 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.002
         Mqo 171 ieeGtdvnfgaltrqllkalekkkgvelklkhevkdlkreedgkWkvkvkdlk 223
                  ++G d+n  +l + +l+ + + +g ++ +k  vk+++++++ +W v+++d+ 
  CCG92881.1 141 ESSGKDINQPKLLQGYLEGVLQ-SGGKIYYKAFVKRIEKQQT-EWVVEANDKL 191
                 568**************99955.999************9988.8****99875 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.4   0.00021      0.31       2      36 ..       5      39 ..       4      43 .. 0.94
   2 ?   -0.1   0.0       0.2   2.9e+02     112     163 ..     153     202 ..     145     205 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00021
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 d +viG+G AG     ++a +g +V++lek++++g
   CCG92881.1  5 DCLVIGAGIAGASVGFHLAIKGLSVIILEKESSAG 39
                 679***************************99987 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.2
                  HHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 112 vdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  ++ +l+ + ++g k++++  vk++ek++++   v++ +++ ++a  l+ A G
   CCG92881.1 153 LQGYLEGVLQSGGKIYYKAFVKRIEKQQTE-WVVEA-NDKLFKAPLLINAAG 202
                  556666677889999999999999887777.88888.889999998888887 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00021      0.32       1      50 [.       5      54 ..       5     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00021
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignk 50
                  D +V+G+g+aG       a +G +v+++e++   G  +t+     + g +
    CCG92881.1  5 DCLVIGAGIAGASVGFHLAIKGLSVIILEKESSAGYHSTGRSAVFFRGSH 54
                  89******************************999888888777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2522.33
//
Query:       CCG92882.1  [L=193]
Description: putative protease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-47  159.4   0.0    7.8e-47  159.1   0.0    1.0  1  DJ-1_PfpI      DJ-1/PfpI family
      4e-05   23.5   0.0    4.9e-05   23.2   0.0    1.2  1  GATase         Glutamine amidotransferase class-I
     0.0025   17.6   0.1     0.0069   16.1   0.1    1.7  1  ThiJ_like      ThiJ/PfpI family-like
     0.0052   16.4   0.0     0.0081   15.8   0.0    1.3  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
  ------ inclusion threshold ------
       0.02   14.7   0.1      0.054   13.2   0.0    1.7  3  Peptidase_C26  Peptidase C26
      0.066   12.3   0.0        0.1   11.7   0.0    1.3  1  GATase_5       CobB/CobQ-like glutamine amidotransferase doma
       0.19   11.5   0.0       0.27   11.1   0.0    1.2  1  SNO            SNO glutamine amidotransferase family


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.1   0.0     3e-50   7.8e-47       1     163 [.       4     184 ..       4     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 159.1 bits;  conditional E-value: 3e-50
                 EEEEEEEETTBEHHHHHHHHHHHHHTTEEEEEEESS................TSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHH CS
   DJ-1_PfpI   1 kkvlvlladgvedvElivpvdvlkragikvdvvsvd................keevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekv 83 
                 kk+l++++d++ed+E++vp++ l   g++v++v+++                ++++++++G+ + ++a +++v +++yDalvlpGGra pe+lr  +kv
  CCG92882.1   4 KKILMIVGDYAEDYEVMVPFQFLLGIGHEVVAVCPGkskgqkiqtaihdfegEQTYSEKKGHLFELNADFEKVVPKDYDALVLPGGRA-PEYLRLYPKV 101
                 79*************************************************999**********************************.********** PP

                 HHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTSEE--SGGGHHHHHHTTSEE-SS...SEEEETTEEEESSGGGHHHHHHHHH CS
   DJ-1_PfpI  84 velvkefaekgklvaaICagpqlLaaagvlkgrrvTsypavkdklekagakyvdk...rvvvdgnlvTsrgpgaaiefalell 163
                 +e v++f++++k+vaaIC+g qlL aa+vl+g r+T+yp+v ++++ +ga++v     +++vd nlvT+ g++a+++++  +l
  CCG92882.1 102 IECVRHFFDEQKPVAAICHGIQLLTAAKVLSGYRLTAYPTVGPEVDLSGASFVPTgfeEAIVDRNLVTAPGWPAHPKWLSLFL 184
                 ******************************************************9999********************98765 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.9e-08   4.9e-05      26      87 ..      66     128 ..      44     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.9e-08
                 EEETTSHHHHHHHTHHSTSEEEEEEESSCTT...TTTHHHHHHHHCTSTS-EEEETHHHHHHHHH CS
      GATase  26 vvpidasaeeilellknpdgilvsgGpgspg...vegkieaikearenkiPiLGICLGmQllaie 87 
                 +++ +a++e+     k++d+++++gG    +   + + ie++++++++++P+  IC G Qll+ +
  CCG92882.1  66 LFELNADFEKVV--PKDYDALVLPGGRAPEYlrlYPKVIECVRHFFDEQKPVAAICHGIQLLTAA 128
                 555666666664..699*********7777788****************************9876 PP

>> ThiJ_like  ThiJ/PfpI family-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.7e-06    0.0069      83     153 ..      79     140 ..      45     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.7e-06
   ThiJ_like  83 eeydlvllpGGsdkavrelleserlhsllveylklvkrekepskvlgaicqgvlalafakpeldlktttlP 153
                 ++yd++ lpGG+ +        +++ + +++++       +++k ++aic+g+  l++ak       t+ P
  CCG92882.1  79 KDYDALVLPGGRAPEYLR--LYPKVIECVRHFF-------DEQKPVAAICHGIQLLTAAKVLSGYRLTAYP 140
                 689*********997733..3578888888888.......689**************99976655555555 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.2e-06    0.0081      35      89 ..      75     126 ..      48     134 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.2e-06
    GATase_3  35 eslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLG 89 
                 + +++d+d+++lpGg+  +    +    ++ e ++++  +++pv +iC G q+L 
  CCG92882.1  75 KVVPKDYDALVLPGGRAPEYLRLY---PKVIECVRHFFDEQKPVAAICHGIQLLT 126
                 445699*********876544433...457999********************97 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.8   4.5e+03     114     138 ..      30      54 ..      26      79 .. 0.57
   2 ?   -2.8   0.0       1.7   4.2e+03      57      68 ..      79      90 ..      66      95 .. 0.76
   3 ?   13.2   0.0   2.1e-05     0.054      98     121 ..     105     128 ..     100     134 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
  Peptidase_C26 114 GlqllnvalGGtlyqdieeqsgltd 138
                    G+++++v  G +  q+i+++ +  +
     CCG92882.1  30 GHEVVAVCPGKSKGQKIQTAIHDFE 54 
                    6666666666666666665333333 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.7
  Peptidase_C26 57 dkldgllltGgq 68
                   +  d+l+l+Gg+
     CCG92882.1 79 KDYDALVLPGGR 90
                   457999999997 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 2.1e-05
  Peptidase_C26  98 iraalergvPilgiCrGlqllnva 121
                    +r+  ++++P+ +iC G+qll  a
     CCG92882.1 105 VRHFFDEQKPVAAICHGIQLLTAA 128
                    788899***************776 PP

>> GATase_5  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     4e-05       0.1      72     111 ..      95     133 ..      81     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4e-05
    GATase_5  72 lllneklrealekflnredtlaLGiCnGfqlLvklglvpg 111
                 l+l +k+ e +++f+++  + + +iC G+qlL+  +++ g
  CCG92882.1  95 LRLYPKVIECVRHFFDE-QKPVAAICHGIQLLTAAKVLSG 133
                 677899***********.99999***********998876 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.27      33      83 ..      80     127 ..      62     137 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
                 C-SEEEE-SS-HHHHHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHHHCC CS
         SNO  33 evdaliiPGGestamskliertglyedllefvknsekvvlGtCaGlillsk 83 
                 + dal++PGG +    +l  +    e+++ f  +  k+v   C G+ ll++
  CCG92882.1  80 DYDALVLPGGRAPEYLRLYPKVI--ECVRHFFDEQ-KPVAAICHGIQLLTA 127
                 67***********9999998865..******9988.*********988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1439.67
//
Query:       CCG92883.1  [L=186]
Description: ribosome releasing factor [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-54  182.1   4.2    7.4e-54  182.1   4.2    1.3  1  RRF         Ribosome recycling factor
  ------ inclusion threshold ------
      0.026   14.8   0.7       0.06   13.6   0.7    1.6  1  BORCS7      BLOC-1-related complex sub-unit 7
       0.11   12.5   0.1       0.19   11.7   0.1    1.5  1  ADH_zinc_N  Zinc-binding dehydrogenase
       0.16   12.2   4.8       0.32   11.2   0.6    2.4  2  DUF1319     Protein of unknown function (DUF1319)
       0.47   11.1   3.6       0.61   10.7   1.2    2.0  2  DUF883      Bacterial protein of unknown function (DUF883)
       0.81    9.9   3.8        9.1    6.5   0.8    2.3  2  Fib_alpha   Fibrinogen alpha/beta chain family
        4.6    7.7   8.0         17    5.9   0.9    3.0  3  FlaC_arch   Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> RRF  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.1   4.2   2.9e-57   7.4e-54       4     162 .]      24     184 ..      21     184 .. 0.98

  Alignments for each domain:
  == domain 1  score: 182.1 bits;  conditional E-value: 2.9e-57
                 HHHHSS-SSSSCGGGTTSEEEETTEEEEGGGTEEEEESSTTEEEEEESSCCHHHHHHHHHHHSCC-SEEEEESSEEEEE--SSSHHHHHHHHHHHHHHH CS
         RRF   4 elsklrtgranpslldnikVeyygkktpLnqlAqvsvkeartllitpfdkslvkaiekaIlksdlglnpqqdgevlrvpipplTeErrkelvkeakkaa 102
                 el++lr+g+anp+++ ni+Ve+y+++++L++lA ++ ++ ++l+++p+d +lv++i kaI +s+lg+np  d +++r+pippl+eErr el+k+a+k++
  CCG92883.1  24 ELASLRSGKANPEMISNISVEAYETHMKLKDLAAITAPDVNLLVVQPWDLTLVESIRKAIEESKLGFNPVVDAKIIRIPIPPLSEERRMELIKVARKIS 122
                 899************************************************************************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHHHC..S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
         RRF 103 ekakvairniRrdankklkklekk..iseDdvkkaekeiqkltdkyikeidellkakekell 162
                 e+ +v ir iRr+  ++lkkl k+  iseD+v++aekeiqkltd yi+++d++l+ kek+ll
  CCG92883.1 123 EEGRVGIRAIRRHSLEELKKLGKEahISEDEVERAEKEIQKLTDLYIEKVDKMLEVKEKDLL 184
                 ***********************559*********************************996 PP

>> BORCS7  BLOC-1-related complex sub-unit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.7   2.4e-05      0.06      18      77 ..     112     170 ..     106     185 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.4e-05
      BORCS7  18 keLtervevivndissvakqvvkgSksseilmkaaksfaqqedaienteesLkkmsllt.t 77 
                 +eL + +++i ++    ++++ ++S   e l+k  k+  ++ed +e++e+ ++k++ l  +
  CCG92883.1 112 MELIKVARKISEEGRVGIRAIRRHSL--EELKKLGKEAHISEDEVERAEKEIQKLTDLYiE 170
                 577777888888888899*******9..***************************998423 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   7.5e-05      0.19      21      55 ..     131     166 ..     112     179 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.5e-05
                 ESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTT CS
  ADH_zinc_N  21 dsseeklelakklGadevinykea.dlverikeltg 55 
                 ++ ++ le +kklG ++ i ++e  + +++i++lt+
  CCG92883.1 131 AIRRHSLEELKKLGKEAHISEDEVeRAEKEIQKLTD 166
                 567889***************99999*********3 PP

>> DUF1319  Protein of unknown function (DUF1319)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.069   1.8e+02      40      67 ..       6      33 ..       3      52 .. 0.82
   2 ?   11.2   0.6   0.00012      0.32      32      69 ..     134     171 ..     103     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.069
     DUF1319 40 ivkekrrslekqlkklkselkklrelyl 67
                +++e +  +ek ++k + el+ lr+   
  CCG92883.1  6 VLLEAEDKMEKSVEKTRMELASLRSGKA 33
                67899999***************98655 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00012
     DUF1319  32 kvnlkslkivkekrrslekqlkklkselkklrelyler 69 
                 +  l++lk +  + +  e+++++ ++e++kl++ly+e+
  CCG92883.1 134 RHSLEELKKLGKEAHISEDEVERAEKEIQKLTDLYIEK 171
                 34789999999999999*******************97 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       0.5   1.3e+03      32      49 ..      10      27 ..       2      56 .. 0.66
   2 ?   10.7   1.2   0.00024      0.61      14      70 ..     114     170 ..     107     173 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.5
      DUF883 32 lRerleerlerarerlrd 49
                + +++e+++e++r +l+ 
  CCG92883.1 10 AEDKMEKSVEKTRMELAS 27
                334444444444444443 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00024
      DUF883  14 leellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVr 70 
                 l +++++ ++e++  ++++R+   e+l+++ ++++  e++v++  ke+ + +d y++
  CCG92883.1 114 LIKVARKISEEGRVGIRAIRRHSLEELKKLGKEAHISEDEVERAEKEIQKLTDLYIE 170
                 56789999*********************************************9986 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.017        44      22      60 ..       3      40 ..       2      64 .. 0.74
   2 ?    6.5   0.8    0.0035       9.1      85     124 ..     142     181 ..     111     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.017
                HHHCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH CS
   Fib_alpha 22 lqdlllkyekdvkkdlekleneleeisnstkeaeelvke 60
                + d+ll+ e +++k++ek + el+++++ + + e  +++
  CCG92883.1  3 IDDVLLEAEDKMEKSVEKTRMELASLRSGKANPEM-ISN 40
                7899****************999999866555443.333 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0035
                 HHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  85 eleeeilrlketidaqesnirvLqnvlesneqkiqkLeqd 124
                 +l +e    ++++ + e++i++L++++ +++ k+ + +++
  CCG92883.1 142 KLGKEAHISEDEVERAEKEIQKLTDLYIEKVDKMLEVKEK 181
                 45566677789999999*************9999998875 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2    0.0089        23       3      21 ..      12      30 ..      12      48 .. 0.88
   2 ?   -2.8   0.0       3.4   8.8e+03      17      25 ..      77      85 ..      74      87 .. 0.53
   3 ?    5.9   0.9    0.0067        17      15      44 ..     139     168 ..     131     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0089
   FlaC_arch  3 delEnklsklsteletvkk 21
                d++E+ ++k+ +el+++++
  CCG92883.1 12 DKMEKSVEKTRMELASLRS 30
                789*************997 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.4
   FlaC_arch 17 etvkkenee 25
                e+++k +ee
  CCG92883.1 77 ESIRKAIEE 85
                455555554 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0067
   FlaC_arch  15 eletvkkeneelsksveelkenVkdllsLY 44 
                 el+ + ke    +++ve+ ++++++l +LY
  CCG92883.1 139 ELKKLGKEAHISEDEVERAEKEIQKLTDLY 168
                 566667777777888999999999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1250  (0.0697194); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1292.36
//
Query:       CCG92884.1  [L=252]
Description: uridylate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-28   98.3   0.1      6e-28   98.1   0.1    1.1  1  AA_kinase  Amino acid kinase family


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.1   3.3e-32     6e-28       1     241 []      14     223 ..      14     223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 3.3e-32
                 TEEEEEE-TTCCC.CTCC...HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHH CS
   AA_kinase   1 krvVvKlGGsslt.dkee...aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaalla 95 
                 kr+ +Kl G +l+ ++e    ++ r++a qia++ + g ++++V+Ggg++ +g +a  s++ ++  a                d++++l+++++   l+
  CCG92884.1  14 KRILLKLSGEVLSgETEHldlEVARKIAYQIAEIYSLGVDIAIVIGGGNIWRGTMASHSEFLDRSTA----------------DYMGMLATIINGLALQ 96 
                 799**********66666**************************************95555555555................**************** PP

                 TTHGEEEE-GGGTCEECCCE..HHHTTTCEEE.CCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTC CS
   AA_kinase  96 aglpavglsaaaldateagrdegsdgnvesvd.aeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkv 193
                  +l+  g++ +  +a+e +       + e    ++ai++l ++++v+ ++g +   ++    ++s+Dt+aal A +++A  ++ +t V+GVyd+dpk++
  CCG92884.1  97 GALEHLGIPTRVQTAIEVKN------VAEPFIrRRAIRHLEKKRIVIFVAGTG---NP----FFSTDTAAALRASEIEAQVILKATKVEGVYDSDPKIN 182
                 ***********999998777......555555266666666667999999965...33....99*********************************** PP

                 CTTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHHHCTT-EEEEEE CS
   AA_kinase 194 pdarllpeisvdeaeesaselatgGmkvkhpaalaaarrggipvvItn 241
                 p a++++++++ +a +           +++  a+ +++ ++ip+++++
  CCG92884.1 183 PQAKRYEQLTYLDAIQ-------NRLTIMDSTAFSLCMDNRIPIIVFD 223
                 ****************.......8899999**************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1679.10
//
Query:       CCG92885.1  [L=692]
Description: excinuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-28   98.7   0.1    1.3e-27   95.8   0.0    2.5  2  UvrB_inter     UvrB interaction domain
    3.3e-19   69.3   0.1    1.5e-18   67.1   0.0    2.2  2  Helicase_C     Helicase conserved C-terminal domain
    1.4e-16   60.1   0.2    3.4e-16   58.8   0.2    1.7  1  UvrB           Ultra-violet resistance protein B
    6.3e-11   42.6   0.0    3.4e-10   40.2   0.0    2.1  2  ResIII         Type III restriction enzyme, res subunit
      9e-09   34.8   6.8    3.7e-08   32.9   6.8    2.1  1  UVR            UvrB/uvrC motif
    0.00022   21.1   0.1      0.012   15.4   0.0    3.2  3  DEAD           DEAD/DEAH box helicase
    0.00056   19.7   0.0       0.16   11.7   0.0    2.5  2  AAA_30         AAA domain
     0.0023   18.3   0.3        1.1    9.5   0.2    2.6  2  AAA_19         AAA domain
  ------ inclusion threshold ------
      0.023   14.7   0.0        0.2   11.7   0.0    2.8  2  UB2H           Bifunctional transglycosylase second domain
      0.024   14.7   2.8       0.12   12.5   0.0    3.1  3  DUF87          Helicase HerA, central domain
      0.076   13.3   0.3       0.73   10.1   0.0    2.8  3  AAA_22         AAA domain
      0.093   11.6   0.0       0.21   10.4   0.0    1.6  1  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
        6.5    7.1   6.4          2    8.8   0.3    2.9  3  DUF3232        Protein of unknown function (DUF3232)


Domain annotation for each model (and alignments):
>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.0   9.1e-31   1.3e-27       3      91 .]     166     253 ..     164     253 .. 0.98
   2 ?   -1.4   0.0         2   2.8e+03      51      87 ..     637     675 ..     627     677 .. 0.72

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 9.1e-31
  UvrB_inter   3 lkvgqkidreellrkLvelqYerndvelkrGtFrvrGdtveifpasaeevairieffgdeiesireidpltgkslekleeitifPakhf 91 
                 ++vgq+++r+++l+ L+e+ Yerndvel+rG+FrvrGd+vei+ +s  ++ +rieff d+i++i+e++ ltg+s+ +l++  ifPa+hf
  CCG92885.1 166 VEVGQNLSRNQFLAMLIEMLYERNDVELTRGKFRVRGDVVEICHVS-PDKGLRIEFFADRIDRITEFELLTGRSVCRLQKELIFPASHF 253
                 79********************************************.6****************************************9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2
  UvrB_inter  51 evairieffgdei..esireidpltgkslekleeitifP 87 
                 e   r+ef++  +  ++i+e++   ++ +e+  ++ i+P
  CCG92885.1 637 EASARLEFEKAALyrDQIEELKRRLQNGKENKANVPIVP 675
                 667789999877766778888877778788888877777 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       4.7   6.5e+03      19      49 ..     218     245 ..     211     271 .. 0.67
   2 !   67.1   0.0   1.1e-21   1.5e-18      10     110 ..     444     549 ..     435     550 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.7
                 EEEEESSHHHHHHHHHHHHHTTSTEEEESTT CS
  Helicase_C  19 ilifvntidrlekvklllekkgikvavlhge 49 
                 i  f+ +idr+ +++ll    g +v++l+ e
  CCG92885.1 218 IEFFADRIDRITEFELL---TGRSVCRLQKE 245
                 56788888888656666...45666666655 PP

  == domain 2  score: 67.1 bits;  conditional E-value: 1.1e-21
                 HHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.....SSHHHHHH CS
  Helicase_C  10 lkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.....rnvtsyiq 102
                 +++ ++g+++li + t++++e+ +++l +  g+kv +lh+el + er eil+  ++g++dvL+  + + +G+d+p+v+lV ++d++     r+ +s+iq
  CCG92885.1 444 YDRIKDGQRVLILTLTKQTAEDlADYL-RDLGFKVRYLHSELDAIERVEILRGLRAGDFDVLVGINLLREGLDLPEVSLVCILDADkegylRSEKSLIQ 541
                 456699************999877888.4559******************************************************87777778***** PP

                 HHTTSSST CS
  Helicase_C 103 riGRtgRa 110
                  +GR++R 
  CCG92885.1 542 IAGRAARH 549
                 *******6 PP

>> UvrB  Ultra-violet resistance protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.2   2.5e-19   3.4e-16       1      39 [.     556     594 ..     556     597 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 2.5e-19
                 EE-SS--HHHHHHHHHHHHHHHHHHHHHHHHT------X CS
        UvrB   1 lYADkiTdSMkkAideTerRReiQeaYNeehgItPktik 39 
                 lYAD +T+S++k i+ T++RR++Q  YN+ehgItP+++k
  CCG92885.1 556 LYADVMTQSIQKLISVTQYRRNKQLLYNQEHGITPRSVK 594
                 8************************************98 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   2.5e-13   3.4e-10       7      85 ..      21      97 ..      16     144 .. 0.76
   2 ?   -1.0   0.0       1.1   1.6e+03     134     145 ..     334     348 ..     251     401 .. 0.67

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 2.5e-13
                HHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG........G CS
      ResIII  7 yQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke....i 85
                 Q +aie+l++ ++  + k+ ++   TG+GKT+++ak ie++++      +l+++++k+l  q+++e+k+f+++a+ e     
  CCG92885.1 21 DQGKAIEELAAGIE-AGTKHQVLLGVTGSGKTFTIAKCIEKVQR-----PTLVICHNKTLAAQLYSEYKQFFPDAAVEyfvsY 97
                5999*********9.****************************9.....8***********************9975554432 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
                 S...EEEEETGGGTT CS
      ResIII 134 d...viiiDEaHrlg 145
                 +   + +iDE+H + 
  CCG92885.1 334 PkdfLTVIDESHATI 348
                 245577888888765 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   6.8   2.7e-11   3.7e-08       2      35 ..     626     659 ..     626     660 .. 0.96

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.7e-11
         UVR   2 klikeLeeemeeAaenedFEkAAklRDqinalkk 35 
                 ++ikeL ++m eA+++++FEkAA +RDqi++lk+
  CCG92885.1 626 EMIKELSAAMVEASARLEFEKAALYRDQIEELKR 659
                 68******************************96 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.4e-06     0.012       4      73 ..      22      88 ..      20     112 .. 0.76
   2 ?   -0.5   0.0      0.67   9.2e+02     126     170 ..     340     401 ..     335     408 .. 0.49
   3 ?    0.9   0.0      0.25   3.5e+02      43     103 ..     446     506 ..     435     567 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.4e-06
                HHHHHHHHH.....TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT CS
                xxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  4 Qaeaiplil.....gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky 73
                Q +ai+++      g ++ ++ + TGsGKT      +++       k +  +l+++  + La q ++++k+f+  
  CCG92885.1 22 QGKAIEELAagieaGTKHQVLLGVTGSGKTFTI-AKCIE-------KVQRPTLVICHNKTLAAQLYSEYKQFFPD 88
                556666666333334478888899******983.34443.......445678********************975 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.67
                 EEETHHHHHHT...TTHHHHHHHHHHSHHHCTTSTTT......................SEEEEEESSBS CS
                 xxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxxx RF
        DEAD 126 VlDEadrlldq...gfsdfinrilnqlpqitcdgklq......................rqvivlSATlp 170
                 V+DE +    q    ++ +++r  + +    +    +                       qvi +SAT+ 
  CCG92885.1 340 VIDESHATIPQiqgMYEGDMSRKRTLV----E----HgfrlpsaldnrplsftefeqkiGQVIYVSATPG 401
                 666666665553332333333322211....1....0222223445555556666555566888888875 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.25
                 TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEE.EEETTSSHHHHHHHHHTT.CSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxx RF
        DEAD  43 kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvl.liiggvaardqlskldng.vdivvg 103
                 + k+g ++li++ t++ ae+ ++ l+ ++ +  +r+l + +   ++ + l+ l++g  d++vg
  CCG92885.1 446 RIKDGQRVLILTLTKQTAEDLADYLRDLGFK--VRYLhSELDAIERVEILRGLRAGdFDVLVG 506
                 6677788888876666666666666666654..333334455555555566665555666666 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00011      0.16       5      44 ..      21      63 ..      19      99 .. 0.73
   2 ?    5.3   0.0      0.01        14      45      82 ..     449     497 ..     438     567 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
      AAA_30  5 eQaaaveallt...sgdrvavltGpAGtGKttalkalreawea 44
                +Q +a+e+l++    g + +vl G+ G+GKt+++++  e +++
  CCG92885.1 21 DQGKAIEELAAgieAGTKHQVLLGVTGSGKTFTIAKCIEKVQR 63
                6777777776522257789**************9988777663 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.01
      AAA_30  45 aggrviglAptgkaAkvLa...eelgieastiakllkrlk........g 82 
                 +g+rv++l+ t++ A++La   ++lg++ + +++ l++ +        +
  CCG92885.1 449 DGQRVLILTLTKQTAEDLAdylRDLGFKVRYLHSELDAIErveilrglR 497
                 489****************5555999*******9998877666665550 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.2   0.00083       1.1       7      36 ..      34      63 ..      27      79 .. 0.83
   2 !    6.3   0.0    0.0084        12      36      75 ..     446     483 ..     434     644 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00083
      AAA_19  7 alkekvllvtaGpGtGKTrvlkhivallve 36
                ++  k+ ++++  G+GKT ++ + ++ +++
  CCG92885.1 34 EAGTKHQVLLGVTGSGKTFTIAKCIEKVQR 63
                77789999****************998876 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0084
      AAA_19  36 elggvkpeeillvaftgrAakelrerlaalgaeatTiHrl 75 
                 ++++   +++l++++t++ a+ l++ l+ lg + + +H+ 
  CCG92885.1 446 RIKD--GQRVLILTLTKQTAEDLADYLRDLGFKVRYLHSE 483
                 4443..389**********************999999954 PP

>> UB2H  Bifunctional transglycosylase second domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015       0.2       2      42 ..     167     207 ..     166     233 .. 0.92
   2 ?   -2.9   0.0       5.1     7e+03      11      38 ..     385     408 ..     378     413 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
        UB2H   2 ypGaalsaaqleqeLellgYrkvsnvtrpGeyavsgnriel 42 
                 + G++ls++q+ ++L ++ Y +++   + G+++v+g+ +e+
  CCG92885.1 167 EVGQNLSRNQFLAMLIEMLYERNDVELTRGKFRVRGDVVEI 207
                 68*********************99999*********9998 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.1
        UB2H  11 qleqeLellgYrkvsnvtrpGeyavsgn 38 
                 ++eq   ++ Y +    ++pGey+ +++
  CCG92885.1 385 EFEQKIGQVIYVS----ATPGEYELRKT 408
                 5555555555544....48999987765 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.6e-05      0.12      23      48 ..      37      62 ..      32     138 .. 0.78
   2 ?   -1.6   0.1       1.7   2.4e+03     151     182 ..     247     285 ..     214     304 .. 0.70
   3 ?    0.2   0.5      0.49   6.8e+02      85     128 ..     578     625 ..     513     683 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.6e-05
       DUF87 23 trHlAilgsTGsGKSntvavLleell 48
                t+H   lg TGsGK++t+a  +e++ 
  CCG92885.1 37 TKHQVLLGVTGSGKTFTIAKCIEKVQ 62
                79999*************99888876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.7
       DUF87 151 k.......kekeelrklknqaiarlldkledllrkggsf 182
                         +++e+lrk+ ++++++l +++ +l ++g++ 
  CCG92885.1 247 IfpashfvTTSEKLRKAIQSIRKELDERIAELESRGKLL 285
                 255555556677888888888888888888888888877 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.49
       DUF87  85 a...kdkelkinpwsldpeelldllee.ddkpaaavqrsvleealdqa 128
                 +    ++e  i p+s++ +el++l +  + +++++++ + +++  d++
  CCG92885.1 578 KqllYNQEHGITPRSVKAKELVSLHGLiRSEAKEPIHLKGIDQNADYM 625
                 234444455566666666666666555444444444444444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00053      0.73       6      60 ..      38      82 ..      33     144 .. 0.78
   2 ?   -0.8   0.1       1.3   1.7e+03      99     112 ..     286     304 ..     257     317 .. 0.81
   3 ?   -2.5   0.0         4   5.5e+03     106     117 ..     651     662 ..     570     674 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00053
      AAA_22  6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrel 60
                ++ v+ G +G+GKT+++++  e+ +        rp+  +v + ++t  ++l++e 
  CCG92885.1 38 KHQVLLGVTGSGKTFTIAKCIEKVQ--------RPT--LVICHNKTLAAQLYSEY 82
                677999****************984........444..34455555555555554 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.3
      AAA_22  99 Eaqhlr..s...eealeeL 112
                 Eaq+lr  +    e+leeL
  CCG92885.1 286 EAQRLRlrTendLEMLEEL 304
                 8999987524568888887 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4
      AAA_22 106 eealeeLrslln 117
                  +++eeL+++l 
  CCG92885.1 651 RDQIEELKRRLQ 662
                 455555533333 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00015      0.21       6      41 ..      28      63 ..      24      86 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
  TrwB_AAD_bind  6 gvplpkeretqhilivGttGsGKtqalekllraira 41
                    ++   e+ t+h +++G tGsGKt ++ k ++++++
     CCG92885.1 28 ELAAGIEAGTKHQVLLGVTGSGKTFTIAKCIEKVQR 63
                   5666778889********************999875 PP

>> DUF3232  Protein of unknown function (DUF3232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       2.3   3.1e+03      26      59 ..     239     272 ..     219     297 .. 0.74
   2 ?   -0.5   0.1       1.1   1.5e+03      24      80 ..     426     483 ..     408     495 .. 0.71
   3 ?    8.8   0.3    0.0015         2      33      72 ..     617     659 ..     608     670 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTS- CS
     DUF3232  26 alelledlidaatrYvkkvvemearlasarfrle 59 
                 + +l  +li  a+++v+   ++ ++++s+r  l+
  CCG92885.1 239 VCRLQKELIFPASHFVTTSEKLRKAIQSIRKELD 272
                 5677777888888888888888888888887776 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHCCTS-HHHHHHHHHHHHHHHHHHHHH CS
     DUF3232  24 evalelledlidaatr.YvkkvvemearlasarfrleaeelkelveelDrsRrlahns 80 
                 ev ++ le+ id + +    ++ +    l     +  ae+l +++ +l    r  h  
  CCG92885.1 426 EVEVRPLEGQIDDVIKeSYDRIKDGQRVLILTLTKQTAEDLADYLRDLGFKVRYLHSE 483
                 6778889999987654145555555555555566788899999999988777777765 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHHHHHHHHHHHHCCTS-HHH...HHHHHHHHHH CS
     DUF3232  33 lidaatrYvkkvvemearlasarfrleaee...lkelveelDr 72 
                  id+ ++Y++ + e+ a++  a  rle e    +++ +eel r
  CCG92885.1 617 GIDQNADYMEMIKELSAAMVEASARLEFEKaalYRDQIEELKR 659
                 59*****************999999998876669999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 4841.47
//
Query:       CCG92886.1  [L=227]
Description: Predicted phosphoribosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-24   84.6   0.0    1.4e-23   83.2   0.0    1.7  1  Pribosyltran  Phosphoribosyl transferase domain
    1.6e-05   24.5   0.0    2.5e-05   23.9   0.0    1.4  1  PRTase_2      Phosphoribosyl transferase
    6.3e-05   22.5   0.2    0.00011   21.7   0.2    1.6  1  UPRTase       Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   2.3e-27   1.4e-23       7     155 ..       7     195 ..       3     199 .. 0.92

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 2.3e-27
                   T---EEEEEEETTEEEEEE--GGGE.EEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE............................... CS
  Pribosyltran   7 enpaildavarlaaeileeyngkpd.vvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdes....................... 79 
                   + ++   ++ rl+ae l ey+gk d v+++ +rgGv ++ ++++ L++pl++  ++k   + +ee a g++++                        
    CCG92886.1   7 QDRK---EAGRLLAEELLEYGGKSDvVILALPRGGVEVGFAMSNILKLPLDIFVVRKIGVPWQEELAMGAIASGgiqvlnqsvinslnideetirev 100
                   4444...8889999999998888885789**********************9999999999999998888776699********************* PP

                   ..................EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEEEEEEEE-HHHHHHHHHH-TTS......EEEEEEE-SE CS
  Pribosyltran  80 ..................rlledpagkkVliVDDildtGgTllaalelLkekgpeevriavlvdkpateeevdknakrvfsls.pdnfvavvgfe 155
                                      ++ ++ +k++++VDD+++tG+T++aa+ ++++  p+e+++av+v++p  +ee +k a+rv+ l+ p+ f+ v + +
    CCG92886.1 101 tarelqelhrrenlyrkdLPALSLTNKTIILVDDGIATGSTMRAAVAAIRRLAPKELIVAVPVAPPYVYEEMKKIADRVVVLMtPEEFYGVGQWY 195
                   ******************9*********************************************************************9998876 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   4.1e-09   2.5e-05     108     157 ..     113     162 ..      76     185 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 4.1e-09
    PRTase_2 108 hllyaedeellaaakelvLvDDEistGktalnliralqeklprkryvvvs 157
                  l  +  ++l  ++k+++LvDD i+tG+t+ + + a+++ +p++ +v v 
  CCG92886.1 113 NLYRKDLPALSLTNKTIILVDDGIATGSTMRAAVAAIRRLAPKELIVAVP 162
                 33335566677799****************************99888775 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.2   1.9e-08   0.00011     106     161 ..     110     164 ..      21     185 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.9e-08
     UPRTase 106 lepveyynkLPkki.aertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvla 161
                  +  +y + LP+   +++t++l+D  iaTG+++ aa+  +++     ++ +v+  +a
  CCG92886.1 110 RRENLYRKDLPALSlTNKTIILVDDGIATGSTMRAAVAAIRR--LAPKELIVAVPVA 164
                 445678889**9888***************************..5555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1703.88
//
Query:       CCG92887.1  [L=260]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-54  185.5   0.3    1.6e-54  185.3   0.3    1.0  1  DUF72     Protein of unknown function DUF72


Domain annotation for each model (and alignments):
>> DUF72  Protein of unknown function DUF72
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.3   0.3   8.8e-59   1.6e-54       1     217 [.      39     255 ..      39     256 .. 0.93

  Alignments for each domain:
  == domain 1  score: 185.3 bits;  conditional E-value: 8.8e-59
                 B.TT..CCCHHHHHCCT-SEEEE-HHCCSSS-HHHHHHHHCTS-TT-EEEEE--CCCCCS...G-SCHHHHHHHHHH.CHHHCT-EEEEEEE--TT--S CS
       DUF72   1 YpeglkkkerLeyYarhfntVEinstFYalpspetvakwaaqtpedFrFavKapraither..nedaeealerflesalepLgeklgpllfQlppsfkf 97 
                 Ype+l++++++eyY+++f++VE+n+tFY++  ++t+++wa++tp +FrF++K+pr i+h r  n ++++++ rf++     Lgek+g +l+Ql+p+f  
  CCG92887.1  39 YPEDLPQSKWFEYYCSQFDAVEVNATFYRFFPKSTYENWAKKTPTKFRFVLKVPRLISHVRllN-NVNDLILRFCND-SGVLGEKIGLYLLQLSPKFPL 135
                 9**********************************************************86555.79*********8.*******************66 PP

                 .HHHHHHHHHHTTTS-..S.EEEE--BGGGH.HHHHHHHHTT-EEEE.E--SSC--------SSTEEEEEE--SHHTTB----HHHHHHHHHHHHHHHT CS
       DUF72  98 deenlerLeaflaalp..l.lavEvRhrswf.ellellrehgvavvl.depkkpklpledvttadfvyvRlhgreeryayrYseeelaewaerikawaa 191
                 ++   erL+  l+a+p  + +avE+R+++    l+++l+++++++++ d   +p l+++++ t++  y+Rlhgr+++++y Y++ee++e+++ +k++ +
  CCG92887.1 136 EP---ERLQIALEAFPdpTkVAVEFRTKADIaSLVAILKAKQAVYCVaD---SPLLKMQPELTSSIGYLRLHGRKQWFSYLYNHEEIQEIVRSAKKLVN 228
                 75...888888888888755********97756*********9988857...789999****************9*********************877 PP

                 CS.SEEEEEE-SBCCCHHHHHHHHHHH CS
       DUF72 192 eg.revyvffnndaegqaplnaraLae 217
                 +g +evy+ffnn+  g a++na a ++
  CCG92887.1 229 KGaKEVYIFFNNTTMGWAADNALAVKR 255
                 776*******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1898.93
//
Query:       CCG92888.1  [L=315]
Description: Phosphomannose isomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-10   39.8   0.0    1.8e-07   30.7   0.0    2.5  2  PMI_typeI        Phosphomannose isomerase type I
  ------ inclusion threshold ------
      0.098   12.3   0.0       0.15   11.7   0.0    1.2  1  Caps_synth_GfcC  Capsule biosynthesis GfcC
        0.1   12.8   0.0       0.25   11.5   0.0    1.6  1  Pirin_C_2        Quercetinase C-terminal cupin domain


Domain annotation for each model (and alignments):
>> PMI_typeI  Phosphomannose isomerase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0     3e-11   1.8e-07       1     107 [.       3     107 ..       3     117 .. 0.80
   2 !    6.0   0.0   0.00098       5.9     249     359 ..     156     265 ..     147     278 .. 0.61

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 3e-11
                 EEEEEEEEEE-TTBEECGGSHHHHHHHHH-TT..TTSCEEEEEEC--TTS-EECTTTCCCC.HCHHHHHHHTGHHHCCHH...TSS-SEEEEEEEESS- CS
   PMI_typeI   1 lfkLqcgvqnyaWGkiGsesalakllaasdPsieedkpyaElWmgtHpkgpskvlnkklkd.vvlkellaelresvgkkf...geelpfLfKvLsvekv 95 
                 +f+ ++ +++++WG  G    l k++a +d      + ++E W       +  vl + +   + l++l+  ++e++  +    + ++p++ K+L+ + +
  CCG92888.1   3 IFQFHPIYKKKIWG--G--GLLNKFVAGKDSE--SFQLVGESWQLVDRAEEISVLKSPYASmLNLHDLWVNQKEEIFGRNappTTRFPLIVKILDCRLP 95 
                 5888999*******..8..7888888877755..89********97776666677777555056788888888877766646677************** PP

                 --EEE---HHHH CS
   PMI_typeI  96 lSiqvHPdKkla 107
                 +SiqvHP  k a
  CCG92888.1  96 TSIQVHPGEKVA 107
                 *******86655 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.00098
                 EEEEEE.TT.EECCHCCHHCECCEEE.EEEEEES-EEEEECCCECCEEECHCCHCH.EEEEEECCCCEE--BSCEECEEEEEEECCCCECCEEECCCTT CS
   PMI_typeI 249 LNlvkLnpGEAmflkandphaylsGd.ivecmaasdnvvRaGlTpKfidvkelvemltYkykpsdelklqqteslldasvlydppieefavektklkkg 346
                 LN++       ++++  ++ha  +G+ i+e   +sd++ R     +  +  +l + l+Y ++++ +l l++++++l + +      + fav++++lk+g
  CCG92888.1 156 LNHIPTFSSHGILVESGQIHAIGEGNlILEIQDNSDTTFRIYDWERPNENGSLRQ-LHY-WESVLSLSLEPNNPKLLSPEAISVEQNYFAVKRIELKAG 252
                 5555555555556666666666666534566666666666655555566666655.666.777777777777766666555555666677777777777 PP

                 EEEEE-TTS-EEE CS
   PMI_typeI 347 eatilplesasil 359
                 +a+   l++as+l
  CCG92888.1 253 QAYACHLDGASFL 265
                 7777777777765 PP

>> Caps_synth_GfcC  Capsule biosynthesis GfcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.5e-05      0.15     191     227 ..     123     160 ..     112     161 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.5e-05
  Caps_synth_GfcC 191 evapGstiyvgfeesvlpeqysal..nedivellrnrip 227
                        +pGs+iy+gf++ ++p+ +++l   + i+++l n ip
       CCG92888.1 123 ATLPGSSIYLGFKQAISPNLLKELigKKAIIQYL-NHIP 160
                      579*******************996668899999.7776 PP

>> Pirin_C_2  Quercetinase C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.2e-05      0.25      13      76 ..     236     301 ..     230     310 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.2e-05
   Pirin_C_2  13 kinQda.rlyaakldegesleyelaagrkaYlqvieGevevngeslaagDGlaiedes.slsltae 76 
                 +++Q+   + +++l++g+    +l+    +Yl+   G+v + +   ++g G+ ++ ++ +l++ + 
  CCG92888.1 236 SVEQNYfAVKRIELKAGQAYACHLDGASFLYLFFCGGRVVIGDILYDKGQGIFVSANHgKLEVVGL 301
                 556654257899***************9**************************976647777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2258.27
//
Query:       CCG92889.1  [L=390]
Description: Sulfite reductase, alpha subunit (Flavoprotein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-35  121.3   0.1    1.5e-34  119.5   0.1    1.8  1  FAD_binding_1  FAD binding domain
    1.6e-19   70.5   0.0    3.6e-19   69.4   0.0    1.6  1  NAD_binding_1  Oxidoreductase NAD-binding domain
     0.0071   16.2   0.7       0.61   10.0   0.1    2.3  2  bacHORMA_1     Bacterial HORMA domain family 1
  ------ inclusion threshold ------
       0.17   12.1   0.2       0.36   11.0   0.2    1.4  1  Fasciclin      Fasciclin domain


Domain annotation for each model (and alignments):
>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.1   3.3e-38   1.5e-34       4     222 .]      15     212 ..      13     212 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 3.3e-38
                    BTTB-EEEEEEEEEE---.-SS--EEEEEEE-TTBT----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT..S--SSSSSEEHHH CS
  FAD_binding_1   4 dakkvflakvlknreLtkpesernvihveldisdsglkYetGdhlgvypsNneelVeellellgldpkadevvelkaldeesaekeprleptTlrq 99 
                    ++++++la++++n  Ltk +se+++ h+ +di++sg++Y++Gd+lgv+psN++  Ve++ +l  ldp  +e+v+ ++ +            ++lr+
     CCG92889.1  15 SRNNPYLASIRENILLTKEGSEKETRHIVIDIKGSGITYQVGDSLGVFPSNPPYIVEKIFQLQSLDP--EELVNYQNTK------------ISLRE 96 
                    5789***************************************************************..9999988888............899** PP

                    HHHHTB--SS---HHHHHHHGGG-SSHHHHHHHHHHHH-HHHHHTTTTT--HHHHHHHHHTT---TTS-HHHHHHHS-B---EEEEB-S-TTTTTT CS
  FAD_binding_1 100 alkyylditgppskqlleaLaefaseeeekqkLekLssdegakeykelklneartllevleefpsvklplefLlevlpqLkpRyYSiSssskvhpd 195
                     l +++ +++ ++k++l+ L++  s+++++++Le +  +  +ke++   + +   +l+ +ee+p v  + ++L+++l ++ pR YSi+ss+ + pd
     CCG92889.1  97 FLSKHV-VLTRVTKKFLQLLSQKISSASQRKRLEEILGQ--EKELEAYLWGK--DYLDFFEEYPEVSFSSNELVASLGRMVPRLYSIASSPLMFPD 187
                    **9999.6679**********************998887..78888877765..69**************************************** PP

                    EEEEEEE--EE---SSS--EE-HHHHH CS
  FAD_binding_1 196 evhltvvVveyetdgegrirkGvcsny 222
                    evhltv+V  ++   +gr+r+G ++ +
     CCG92889.1 188 EVHLTVAVIRFKL--SGRMRYGNATGF 212
                    ************6..*******99976 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   8.1e-23   3.6e-19       1     108 [.     246     352 ..     246     353 .. 0.85

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 8.1e-23
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH....HSST CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrtee.dllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells....lkke 91 
                    mi++GtGiaP+r++l++++++  + +k +l++G +++  d+ly+eel  +   ++g   +++  +   ++++  k +vq+++ e +++    + ++
     CCG92889.1 246 MIGPGTGIAPFRAFLQHRMMA-GHWGKNWLFFGEQHQStDFLYKEELLDW--LKKGV--LTKL-DTAFSRDQSYKIYVQHRMKESAAElwhwI-QN 334
                    9*******************8.999*********99988***********..55552..2233.33444444568*********999999955.99 PP

                    TEEEEEEC.SHHHHHHHH CS
  NAD_binding_1  92 ethvyvCG.ppgMikavr 108
                    ++ +yvCG ++ M+k+v+
     CCG92889.1 335 GAYIYVCGdAKHMAKDVH 352
                    ***************997 PP

>> bacHORMA_1  Bacterial HORMA domain family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.1    0.0067        30      45      72 ..     287     314 ..     275     328 .. 0.80
   2 !   10.0   0.1   0.00014      0.61      13      47 ..     341     375 ..     337     385 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0067
  bacHORMA_1  45 yeedievllkagyLdtvdlgfksngkwi 72 
                 y+e+++  lk+g+L ++d  f ++++ +
  CCG92889.1 287 YKEELLDWLKKGVLTKLDTAFSRDQSYK 314
                 99*******************9888544 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00014
  bacHORMA_1  13 vtdarkvarkvaaDlkriarsygkpsdeeiedyee 47 
                   da+++a+ v + l+ iar +g +s+ee++ y +
  CCG92889.1 341 CGDAKHMAKDVHQSLIDIARDTGGMSQEEAQHYVN 375
                 569****************************9975 PP

>> Fasciclin  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   8.1e-05      0.36      37      89 ..      77     129 ..      69     138 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.1e-05
                 CCCHHHHHHHHHTCHHHHHHHHHTTEEESSS-HHHHHHHHEEEECCTTSSEEE CS
   Fasciclin  37 aklppellakllndkkklkeiLkyHvvpetvsssalkkasetlatllegaklr 89 
                 + l+pe+l +  n+k +l+e+L  Hvv  +v+++ l+  s++++++++ ++l+
  CCG92889.1  77 QSLDPEELVNYQNTKISLREFLSKHVVLTRVTKKFLQLLSQKISSASQRKRLE 129
                 6788999999999***********************99999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2611.40
//
Query:       CCG92890.1  [L=520]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-54  185.5   0.0    1.6e-54  185.0   0.0    1.2  1  Carb_kinase   Carbohydrate kinase
    1.8e-34  119.1   0.0    3.3e-34  118.2   0.0    1.4  1  YjeF_N        YjeF-related protein N-terminus
     0.0039   16.6   0.0     0.0066   15.8   0.0    1.3  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
  ------ inclusion threshold ------
       0.12   11.6   0.0       0.33   10.2   0.0    1.6  2  PfkB          pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.0   0.0   3.6e-58   1.6e-54       1     240 [.     245     485 ..     245     488 .. 0.93

  Alignments for each domain:
  == domain 1  score: 185.0 bits;  conditional E-value: 3.6e-58
                  EEEEE-BTTCHHHHHHHHHHHHCTT-SEEEEEESSTTTCCCCTTTT.TCEECCTTHTTTS...--SSS-SEEEE-TT-SSSHCHHHHCHHHCCCCS-E CS
  Carb_kinase   1 vlvigGsedytGAallaalaalrlgaglvsvateseaiavlksylp.evivhplledeqakileklerldavviGpGLgrdekikklleevlekdepl 97 
                  vl++gGs  +tGA+++aa+aalr+g+glv+v++ +e    + ++ p e +v p++ ++ +      +++ +v++GpG g ++k + +++  ++ d pl
   CCG92890.1 245 VLILGGSVGFTGAPVMAAQAALRIGSGLVNVGVPQEVYPLVAAKAPsESMVFPYDDAKLF--EMVVSKATVVAMGPGFGLEKKSEIFFKTLMSLDLPL 340
                  79*******************************8888887777776378******54444..6667789**************999************ PP

                  EEEGGGGGSGGGG....TTTTSSEEEE--HHHHHHHCTTTCHHCCSHHHHHHHHHHHHTTEEEEESTTSEEEECTTEEEEE----GGG-STTHHHHHH CS
  Carb_kinase  98 viDAdgLnllaqkne.lserkaeviLTPhkkEfkrLlkaivkkeddrlelarelaqklnavvllkgekdvivspegevlinstgssalakGGsGDvLa 194
                  viDAd L+lla + + ++  ++  +LTPh++E +rLl +   + ++r ++ar++++  + + +lkg  +v++++++ev+ n tg+++l +GGsGD L 
   CCG92890.1 341 VIDADCLTLLARNPDfFQLIRKWAVLTPHPGEMSRLLRMEF-SPEERIQVARNFVKDKKITLVLKGVRTVVAQEGKEVFFNTTGNPGLSTGGSGDSLL 437
                  ***************99999*******************99.99****************************************************** PP

                  HHHHHHHHCTSSHHHHHHHHHHHHHHHHHHHCCCT-T..S-HCHHHHH CS
  Carb_kinase 195 GligalLaqneasyeaaiaaawlhgaasdeaaekkgv..gmlatelsk 240
                  G+i++l+aq  +s++aa +++w+hg+a+d aaek+ +  g+l+ ++ +
   CCG92890.1 438 GIIAGLIAQGLDSFDAARCGVWIHGKAADIAAEKRRTkeGLLPLDVVE 485
                  *********************************998877777777766 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.0   7.4e-38   3.3e-34       2     169 ..      24     188 ..      23     189 .. 0.90

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 7.4e-38
      YjeF_N   2 eeLmenagravaevlrallgnspaekkvlvlvGsgnnGgdglaaArhLaqegakVtvllleeeekldedaeralellkkaggkvveekpeedleeklsa 100
                 e+Lme+agr +a ++ +++   p   +vlvlvG+gnnGgdgl++Ar+L+++g+ V v+l +e+ekl + ++++le+l +a  +++ +  ++  +  +  
  CCG92890.1  24 EVLMERAGRMAACFFLQHY---PRMGQVLVLVGKGNNGGDGLVIARELLKRGWPVSVYLSAEREKLGSLCKKKLEELLHAFPQLSLYVYPDPVP-WT-- 116
                 78*****************...**********************************************************99999887777765.44.. PP

      YjeF_N 101 pvdlviDAllGiglrgelreelaeliewlnss..eap..vlavDiPSGldadtGavsgtavkadvtvtfgapk 169
                 ++d+v+D+llGig++gel++e+a+++++ln++  + +  ++avD+PSGl  ++   s  av ad+t+++g+ k
  CCG92890.1 117 KADYVLDCLLGIGVKGELQGEVAQIVKELNEErnRCFfqTIAVDCPSGLWEKSTTNS-LAVIADLTLSIGYGK 188
                 5*******************************87333359*********66555444.4999******99765 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.5e-06    0.0066     115     222 ..     358     455 ..     344     473 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.5e-06
                   HTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BTHHHHHHHHHHHHH CS
  Phos_pyr_kin 115 eLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaerietknthGtGCtlssaiaael 211
                   +L+++  v+tP   E+++Ll ++++ ee ++ +a++++k ++ + ++kG +          v+ ++++++ +++   +  +t G+G++l   ia+ +
    CCG92890.1 358 QLIRKWAVLTPHPGEMSRLLRMEFSPEERIQ-VARNFVKDKKITLVLKGVR---------TVVAQEGKEVFFNTTGNPGLSTGGSGDSLLGIIAGLI 444
                   589999***************9998777765.666677766666666**98.........367889999999999999999**************** PP

                   HCTSSHHHHHH CS
  Phos_pyr_kin 212 akgesleeAvk 222
                   a+g +  +A +
    CCG92890.1 445 AQGLDSFDAAR 455
                   *****999976 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.79   3.6e+03     174     214 ..      66     103 ..      59     111 .. 0.81
   2 ?   10.2   0.0   7.3e-05      0.33     179     284 ..     358     459 ..     344     477 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.79
                 HHHHHHHHCTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHH CS
        PfkB 174 keallellaladllkpneeElealtgekledieealaalhk 214
                 +e l++ ++ + +l + +e l  l+++k    ee+l+a ++
  CCG92890.1  66 RELLKRGWPVSVYLSAEREKLGSLCKKK---LEELLHAFPQ 103
                 6778888899999999999999999999...6788887776 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 7.3e-05
                 HHHCTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHH CS
        PfkB 179 ellaladllkpneeElealtgekledieealaalhklkakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegkslee 277
                 +l+++  +l+p   E ++l+ ++  ++ee ++++ ++++  +k  +v +G++ +++  +++e+++++   +   +t G GDs  g ++  +++g +  +
  CCG92890.1 358 QLIRKWAVLTPHPGEMSRLLRME-FSPEERIQVARNFVKD-KKITLVLKGVRTVVAQ-EGKEVFFNT-TGNPGLSTGGSGDSLLGIIAGLIAQGLDSFD 452
                 67788889999999999999999.6999999999997765.6899999999977777.777777777.56888***********988888888****** PP

                 HHHHHHH CS
        PfkB 278 alrfana 284
                 a+r++++
  CCG92890.1 453 AARCGVW 459
                 ***9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3758.29
//
Query:       CCG92891.1  [L=331]
Description: NADPH:quinone reductase or related Zn-dependent oxidoreductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-21   75.0   0.0    7.6e-21   74.5   0.0    1.2  1  ADH_zinc_N    Zinc-binding dehydrogenase
    8.2e-19   69.0   0.0    1.6e-18   68.0   0.0    1.5  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    1.2e-06   28.3   0.0    7.4e-06   25.8   0.0    2.0  2  ADH_N         Alcohol dehydrogenase GroES-like domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   1.3e-24   7.6e-21       2     116 ..     154     268 ..     153     290 .. 0.91

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 1.3e-24
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEEEEH CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeeefdl 99 
                 vGl a++lA+  + +v+++++s+ k e++ k+Ga  v+++++adl ++    tgg+g d++f+ vG g+ +++ l++++++Gr+   G+ g+ ++e++l
  CCG92891.1 154 VGLSALALANLKNLKVFGMVRSPAKKEKLLKIGAIDVFTEEQADLIDWSLTRTGGRGMDIIFDLVG-GERFSQFLQIAAEKGRILSLGLlGGSKTEISL 251
                 9***************************************666***********************.**********************9888888*** PP

                 HHHHHTT-EEEEE-SSC CS
  ADH_zinc_N 100 rnlllkeksilGsllgs 116
                 ++ll+k+++++Gs+l  
  CCG92891.1 252 MHLLRKRLTLVGSTLRA 268
                 *************9987 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   2.7e-22   1.6e-18       2     133 .]     186     325 ..     185     325 .. 0.77

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 2.7e-22
                   T-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--...........S-EEE-CHHHCTTT-EEEE--GGG... CS
  ADH_zinc_N_2   2 GAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpp..........lsaallkpakkrkgrsvkyeflfsmka 83 
                   GA  v+  ++ d+     + tgg+g+D+++d+vgge + ++ l++ + +Gr++s+g              l+++l  + +  + r++  ++++    
    CCG92891.1 186 GAIDVFTEEQADLIdwslTRTGGRGMDIIFDLVGGERF-SQFLQIAAEKGRILSLGlLGGskteislmhlLRKRLTLVGSTLRARPIEEKMFL---- 277
                   5666665665666667788999****************.*******888***99995444565655555555555555555555555555555.... PP

                   -.-HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  84 saqadileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                      ++  ++++ ++ eG+l+p +dr f +++++eA++y+e++r++GKi l
    CCG92891.1 278 --TQQFRKKILPFFIEGRLKPIIDRIFLWDQLREALKYMEENRHFGKILL 325
                   ..3444578***************************************86 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.2e-09   7.4e-06       3      60 ..      29      88 ..      27      96 .. 0.85
   2 ?    1.4   0.0     0.049   2.9e+02      87     109 .]      88     110 ..      86     110 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.2e-09
                EEEEEEEEEEE-HHHHHHHTTSTTTTSSSS...EE---EEEEEEEEESTT-CS--TT-EEE CS
       ADH_N  3 evlikvkaagiCgsDlhilkggkelevklp...lilGHEivGeveevgpevkklkvGdrVv 60
                e+ ++v +agi++ Dl  l g   ++  +p    i+G E++G + e+g++v+++k Gd V+
  CCG92891.1 29 ELKVDVYYAGINRADLLQLYGL-YPQPGPPasfEIPGLEFSGRICEIGEGVEGWKEGDPVF 88
                789*************999994.444444456689***********************996 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.049
                 TTTSS-SSSBSEEEECGGGEEEE CS
       ADH_N  87 lgvsldGgfaeyvvvpekklvkl 109
                 +g+ + G+f++ vvv+e++l+++
  CCG92891.1  88 FGLLIGGAFSTEVVVHERFLLPI 110
                 677789************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2608.66
//
Query:       CCG92892.1  [L=149]
Description: Thioesterase superfamily enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-14   53.8   0.0    3.1e-14   53.5   0.0    1.0  1  4HBT_2       Thioesterase-like superfamily
    2.7e-10   40.5   0.0    4.1e-10   39.9   0.0    1.1  1  4HBT         Thioesterase superfamily
    0.00069   19.0   0.0     0.0008   18.8   0.0    1.2  1  Acyl-ACP_TE  Acyl-ACP thioesterase


Domain annotation for each model (and alignments):
>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   5.1e-18   3.1e-14       5     116 ..      20     131 ..      18     142 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 5.1e-18
      4HBT_2   5 dvDlnghlnnarylryleearvkflertglksrsiarrgiglilssahvryrrplkfpdrltvefrvididaktliiehrfls.nadgkkaarveeriv 102
                 d+D  g ++n +ylr++e+ar ++ er g   +++++ g  +++ ++++ y++p++++d + +++r+++i++ +++i++++++   +g + a++++ ++
  CCG92892.1  20 DTDSCGLIHNIAYLRFVEIARSELAERLGWPLKEMEKTGLVPVVIKTEIVYKSPARLGDIISIISRLSRIERVRFQIDFELRKeSPSGSLLAECRQILA 118
                 78999999*************************************************************************995559999********* PP

      4HBT_2 103 vmdygkrskkapvP 116
                 +++  +r k++p+P
  CCG92892.1 119 CIKLPER-KPSPIP 131
                 ******9.*****9 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   6.9e-14   4.1e-10       2      74 ..      25     104 ..      25     107 .. 0.97

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 6.9e-14
                 SSB-HHHHHHHHHHHHHHHHHHTTST.......TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETT CS
        4HBT   2 GvvhgGvylallDeaagaalrslggr.......gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrded 74 
                 G +h+ +yl++++ a+++++ +lg +       g ++vv+  +i +++p+rlgd + +  r++r+ r ++ ++ e+r+e+
  CCG92892.1  25 GLIHNIAYLRFVEIARSELAERLGWPlkemektGLVPVVIKTEIVYKSPARLGDIISIISRLSRIERVRFQIDFELRKES 104
                 789999***********************************************************************997 PP

>> Acyl-ACP_TE  Acyl-ACP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.3e-07    0.0008      32     131 ..      37     138 ..      11     149 .] 0.83

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.3e-07
  Acyl-ACP_TE  32 dvaanq.veelGlsddkflkklnlvWvvakyeieierlpefgdkveietwaesenklfcyrdfkvrd..ekgekiieaksvfvlmdqetrrlsrvtde 126
                  ++a     e+lG   ++ ++k++lv vv k+ei  + + ++gd++ i   ++ ++++  + df++r    +g  ++e   +   +   +r++s ++ +
   CCG92892.1  37 EIARSElAERLGWPLKE-MEKTGLVPVVIKTEIVYKSPARLGDIISIISRLSRIERVRFQIDFELRKesPSGSLLAECRQILACIKLPERKPSPIPLN 133
                  55544414567877777.************************************************95558999******************999988 PP

  Acyl-ACP_TE 127 ilaey 131
                    + y
   CCG92892.1 134 WAQAY 138
                  87777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1106.33
//
Query:       CCG92893.1  [L=303]
Description: Dihydroneopterin aldolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-54  181.4   0.0    1.1e-53  180.9   0.0    1.2  1  cpYpsA    Circularly permutated YpsA SLOG family
    5.2e-22   78.5   0.4    1.2e-21   77.3   0.2    1.6  2  FolB      Dihydroneopterin aldolase
    0.00028   20.8   0.3     0.0021   18.0   0.3    2.2  2  YAcAr     YspA, cpYpsA-related SLOG family


Domain annotation for each model (and alignments):
>> cpYpsA  Circularly permutated YpsA SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.9   0.0   1.9e-57   1.1e-53       1     143 [.       5     147 ..       5     149 .. 0.97

  Alignments for each domain:
  == domain 1  score: 180.9 bits;  conditional E-value: 1.9e-57
                 EE----TTHHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEE.SSS--HHHHHHHHHHHHTT--EEEEET CS
      cpYpsA   1 ivsGGQtGvDraaLdaAlaagievgGwvPkgrlaedGsiperYplretessdyaeRtekNvrdsdgtlilt.lgklsgGteltvelarelkkpllvvdl 98 
                 ivsGGQtG+DraaLd+A+a+gi++gGw+Pkgrl+e G+ip++Y+l e ++ +y+ Rt++Nv dsd+tli+t + +l++G+  t+++a +  kp+l+++ 
  CCG92893.1   5 IVSGGQTGADRAALDWAIANGIPHGGWCPKGRLSEAGIIPDKYQLSEAPTPSYTLRTAWNVWDSDATLIVTlKPSLTEGSLATQQFAVTFGKPWLHINE 103
                 89*********************************************************************55667**********************9 PP

                 TTS-HHHHHHHHHHHHTT--EEEEE---TTT-TTHHHHHHHHHHH CS
      cpYpsA  99 ekeaeeeaavlewleenkievlnvaGpreseepgieeeaeellee 143
                 ++++ e++ v+++l++++ie+lnvaG+res+e+gi+  ++++l++
  CCG92893.1 104 TTPEIETE-VKKFLSSHSIEILNVAGSRESKEKGIYDFCYKVLDQ 147
                 99999877.*********************************986 PP

>> FolB  Dihydroneopterin aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.9   5.4e+03      90     105 ..      91     107 ..      70     125 .. 0.59
   2 !   77.3   0.2     2e-25   1.2e-21       1      97 [.     188     287 ..     188     298 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.9
                 EEEEEETTSSSTC.ESE CS
        FolB  90 evrveKpnapiga.ada 105
                  v+  Kp+ +i++ + +
  CCG92893.1  91 AVTFGKPWLHINEtTPE 107
                 45555555554221332 PP

  == domain 2  score: 77.3 bits;  conditional E-value: 2e-25
                 EEEEEEEEEEEESSSHHHHHC-EEEEEEEEEEE-C...HHHHHHTTGGGSS-HHHHHHHHHHHHHSSEES-HHHHHHHHHHHHHCHST.ESEEEEEEEE CS
        FolB   1 ieikglrvpaiiGvnpeErelkQrvvvdleleldl...skaaesddledtvdYaelakavkelvesssfkllEalaeriaealleefp.vekvevrveK 95 
                 i++++++v+a iGv +eEr++kQ+++v+++l++d    +ka  +d+l+ t+dYa++ ++++++ +s++ kl+E+lae+ia +ll + p v+ ++v+v+K
  CCG92893.1 188 IRLEKIQVDAWIGVPEEERRNKQKLLVSVDLYIDPlvtRKAYDTDELSATLDYATVKETIETITSSKPRKLIESLAEEIAIQLLLH-PlVSGLTVKVSK 285
                 799****************************99544559999***********************99****************998.56********** PP

                 TT CS
        FolB  96 pn 97 
                   
  CCG92893.1 286 FP 287
                 86 PP

>> YAcAr  YspA, cpYpsA-related SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3   3.5e-07    0.0021      34      56 ..       5      27 ..       2      30 .. 0.93
   2 ?   -0.4   0.0      0.19   1.1e+03      12      50 ..     229     267 ..     223     274 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.5e-07
       YAcAr 34 lvhGgakGaDrlAarWAaergve 56
                +v+Gg++GaDr A +WA ++g++
  CCG92893.1  5 IVSGGQTGADRAALDWAIANGIP 27
                89******************997 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.19
       YAcAr  12 adleliwatLdklhaeapidmvlvhGga.kGaDrlAarWA 50 
                  d + + atLd +  +  i  ++ +    k +++lA++ A
  CCG92893.1 229 YDTDELSATLDYATVKETI-ETITSSKPrKLIESLAEEIA 267
                 5666688999988888776.66666666677777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2227.73
//
Query:       CCG92894.1  [L=176]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.07   13.2   0.0       0.22   11.6   0.0    1.7  2  Rsbr_N    Rsbr N terminal


Domain annotation for each model (and alignments):
>> Rsbr_N  Rsbr N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.14   2.5e+03      33      49 ..      75      91 ..      61      99 .. 0.62
   2 ?   11.6   0.0   1.2e-05      0.22      45      89 ..     111     152 ..     107     173 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.14
                HHHHHHHHHHHHHH-SS CS
      Rsbr_N 33 yektskefvdlilssve 49
                + k ++e+ + +l+++ 
  CCG92894.1 75 FGKEAQEYAEWLLQNAP 91
                55556677777666655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.2e-05
                 HH-SS.-SSTTHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH CS
      Rsbr_N  45 lssveegneeleekleefaerlvqlGwpLkyltkgLqefrkvvle 89 
                 +++++++ ee+    ++  er+++ G pL++l kg +e+++v l 
  CCG92894.1 111 FNEIKGSSEEVC---AKLKERMIKEGDPLSLLLKGEEELWEVALL 152
                 667776666665...55569********************98653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1375.48
//
Query:       CCG92895.1  [L=453]
Description: FAD/FMN-containing dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-52  176.4   0.0    1.1e-51  175.9   0.0    1.1  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    2.8e-40  137.3   0.7    3.9e-40  136.8   0.7    1.2  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   0.0   1.2e-55   1.1e-51       5     249 ..     216     451 ..     213     452 .. 0.98

  Alignments for each domain:
  == domain 1  score: 175.9 bits;  conditional E-value: 1.2e-55
                    EEEEEEEESSHHHHHHHHHHHHHHT---SEEEEE-HHHHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE..... CS
  FAD-oxidase_C   5 ravalvafpsfeaavkavreiaqagiipaalelmdkkaldlveatkgakkglpdeeealllvefegddeeeaeeelealveaileatgaadvlvaq 100
                    +a +++ f+ +++a+ +v +i ++g+ paale+ d+ +l++++++ +      ++ +a +l+e++g+   ++++++e  +e+il+++  ++++ a 
     CCG92895.1 216 KACLSAYFERMDQAILCVNKILSSGVLPAALEIADRFTLQCAREFTKG---EIPPFDAHILLETDGSI-GAVHSDIE-FFEKILREFQPKELTRAV 306
                    5678899**************************************999...9999*************.9*******.****************** PP

                    .....ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEEETTEEEEEEEEEEE..--TT--THHHHHHH CS
  FAD-oxidase_C 101 deaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyglevvlfgHagdgnlhlyilfdladeaeeeraeklvdevv 196
                     e++ e+lw+ R+ ++      l+++g + l eD++vP+srladl++  + l + ygl+v++fgHagdgn+h+++++d ++++++++ae++   ++
     CCG92895.1 307 GEEACEKLWESRRLFSM----SLKASGLTKLNEDVTVPRSRLADLISLGEHLQRHYGLIVACFGHAGDGNIHVNLMVDWSKKENRDKAEEALNVLF 398
                    *************9999....89************************************************************************* PP

                    HHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT- CS
  FAD-oxidase_C 197 dlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgk 249
                    d ++  +Gsi+gEHG+G++k ++ ++ +++++  l+ +iK+alDPkgiLNPgk
     CCG92895.1 399 DSVILWNGSITGEHGIGIAKLPWWNKAVSQQTRLLHEKIKKALDPKGILNPGK 451
                    ****************************************************9 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   0.7   4.4e-44   3.9e-40       1     138 [.      37     175 ..      37     176 .. 0.98

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 4.4e-44
                    EEEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTT CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsg 95 
                    p++v++pes e+v+a++++a ++g+ v++rGgG +++g+av  +ggvv++++++nr+ ei + +g+a+ve+Gv+ g l++ +++ gl+++++p+s+
     CCG92895.1  37 PDGVFFPESKEDVVALMQFAFSRGIYVTARGGGRGYVGGAVpVKGGVVVSFEKMNRVKEIHPIDGVAVVEPGVITGVLQAKVKEMGLFYPPDPASV 132
                    899**********************************999999***************************************************** PP

                    CGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  96 ipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                     ++t+GG++atnagG+++ kyG +r+++lglevvl+dG+v ++
     CCG92895.1 133 MECTIGGNVATNAGGPRCLKYGVTRNYILGLEVVLSDGSVAKV 175
                    ***************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3796.85
//
Query:       CCG92896.1  [L=159]
Description: Peroxiredoxin [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-26   92.5   0.0    2.2e-26   92.2   0.0    1.1  1  AhpC-TSA       AhpC/TSA family
    2.2e-18   66.4   0.0    2.7e-18   66.1   0.0    1.0  1  Redoxin        Redoxin
    1.8e-05   24.8   0.0    2.6e-05   24.3   0.0    1.3  1  AhpC-TSA_2     AhpC/TSA antioxidant enzyme
  ------ inclusion threshold ------
      0.012   15.9   0.0      0.017   15.5   0.0    1.2  1  Thioredoxin_8  Thioredoxin-like


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.0   4.9e-30   2.2e-26       1     121 [.      11     130 ..      11     133 .. 0.94

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 4.9e-30
                 TTSB----EEESTTCEEEECHHH..TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHHHH CS
    AhpC-TSA   1 vgdkapdfelknadgetvslsdy..kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkvaka 97 
                 vg ++pd+ + + +g+++s+ ++  kg  v+l+f+pk+++p+Ct ++++l++++ ++++++v+vig+s d+p  +kkfi+ ++lnf ll+D++g+v+k+
  CCG92896.1  11 VGSPIPDVWAFDPEGNPMSVRELcsKG-LVLLYFFPKANTPGCTIQACNLRDHLADLQKANVQVIGISRDKPSVQKKFIQNNRLNFMLLCDPSGEVCKE 108
                 7999*******************9666.*********************************************************************** PP

                 TT-EETTTTECSCEEEEE-TTSBE CS
    AhpC-TSA  98 ygvlkeekglalratfvidkegki 121
                 + +++   g++ r +f+i++ gk+
  CCG92896.1 109 FAIPRF-FGMPKRLSFLIKD-GKV 130
                 ****55.6**********85.665 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   5.9e-22   2.7e-18       2     143 ..      11     146 ..      10     150 .. 0.88

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 5.9e-22
                 TTSBB---ECCEETTCEEEEEHHH.HTTSEEEEEEESTTT-HHHHHTHH.HHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHHTT-TSEEEE-TTSHHH CS
     Redoxin   2 agdkaPdftlplaatdgnsvslse.fkgkkvvvnfvpgafcPtCsaehp.yleklaellkekgvdvvavvadndafvkefwgkeglkfpvlsDgsaaft 98 
                 +g+++Pd+     + +gn+ s++e   ++ v+++f+p a +P C+ +++   ++la+l  + +v+v++++ d+ + +k+f+ ++ l+f +l D+s+++ 
  CCG92896.1  11 VGSPIPDVWA--FDPEGNPMSVRElCSKGLVLLYFFPKANTPGCTIQACnLRDHLADL-QKANVQVIGISRDKPSVQKKFIQNNRLNFMLLCDPSGEVC 106
                 89*****996..55**********766666899****************555556777.9999************************************ PP

                 HHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCHTSTTSH CS
     Redoxin  99 kalGlrleedaseglrtpryavidedgkvvylevepepeteesna 143
                 k++ ++           +r+  +++dgkv +++ +p+ +++ +++
  CCG92896.1 107 KEFAIPRFFG-----MPKRLSFLIKDGKVLWRDCHPNIWNTAAEV 146
                 ****995554.....899********************8744444 PP

>> AhpC-TSA_2  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   5.9e-09   2.6e-05       2      54 ..      59     112 ..      58     158 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 5.9e-09
  AhpC-TSA_2   2 Lsrdkpeldaagvklvaigigdps.akkFvkltgfpfelyvDpsaklyqalglk 54 
                 L++ +++l++a+v++++i+ ++ps  kkF++ +  +f l++Dps+++ +++   
  CCG92896.1  59 LRDHLADLQKANVQVIGISRDKPSvQKKFIQNNRLNFMLLCDPSGEVCKEFAIP 112
                 788899*****************98*********************99998766 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   3.7e-06     0.017       4      64 ..      39      98 ..      36     118 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.7e-06
                   EEEEE--S.SSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE. CS
  Thioredoxin_8  4 vlLyfgas.wcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsv 64
                   vlLyf+ + + p c+    +l +   +l+ k +v+++ +s dk  + ++k++++n+ +++ +
     CCG92896.1 39 VLLYFFPKaNTPGCTIQACNLRDHLADLQ-KANVQVIGISRDKP-SVQKKFIQNNRLNFMLL 98
                   7788876626677**********999999.7************6.999******98777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1201.01
//
Query:       CCG92897.1  [L=515]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.3e-119  398.9  25.4    4.3e-61  207.4  16.4    2.2  2  LMF1      Lipase maturation factor
     0.0015   19.0  11.4     0.0043   17.6   3.7    2.8  2  DoxX      DoxX


Domain annotation for each model (and alignments):
>> LMF1  Lipase maturation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.4  16.4   4.8e-65   4.3e-61       1     194 [.     129     329 ..     129     335 .. 0.88
   2 !  196.2   3.8   1.2e-61   1.1e-57     261     440 ..     319     489 ..     303     490 .. 0.86

  Alignments for each domain:
  == domain 1  score: 207.4 bits;  conditional E-value: 4.8e-65
        LMF1   1 lsFqwdslLLEvGflaillapfkllsklpkslplpslvvwlvrwLlfRlmfgsGlvKlrsgdptWwdLtaldyhyetqplPtplawyahqlpswlhkle 99 
                 ++Fqwd lLLE+G+l+il +p+kl    ++ + +ps++++ +rwLlfRlm++sG+vKl+s+dptW+ Ltal+yhyet plPtplawy++++p w+h+ +
  CCG92897.1 129 FNFQWDGLLLECGLLSILSSPWKLHPGFKELTFPPSWATFIFRWLLFRLMLLSGIVKLESHDPTWRALTALKYHYETEPLPTPLAWYFYHFPMWFHETT 227
                 57************************************************************************************************* PP

        LMF1 100 tvvtlvvelvvpfllllPirklrlfggviqvllqlliilsGNynflnlltivlalslldDqflsa............leekkskasstlerllsllvva 186
                 t+++l++elvvpf ++++ r  r++++++  llqlliil+GN++f+n++t++l ++lldD+fl++            +    +k ++ ++ +l l v+ 
  CCG92897.1 228 TFIVLFIELVVPFAIFMG-RLGRTVSFILFSLLQLLIILTGNHAFFNWITLALGFVLLDDSFLKKilpffsksppmpC----PKLQKKFSFFLILPVFL 321
                 ******************.*******************************************9985555444443321....44555555555555555 PP

        LMF1 187 llvllvvs 194
                 + vll+++
  CCG92897.1 322 VSVLLFLE 329
                 55555555 PP

  == domain 2  score: 196.2 bits;  conditional E-value: 1.2e-61
        LMF1 261 llllavlvftlslvpksklasvrnllskrqlmnsslnpfrlvnsYglfrrvtkeRpeviiegtndsetkWkeyeFkykPgdvsrrprlvaPyqprLDwq 359
                 + l++vl+f l+++++       +  + + ++ ss+  +r++n+Yg+f  +t++Rpe+iieg++d+  +Wke+ F  kP+d++++p +++P++prLDwq
  CCG92897.1 319 VFLVSVLLF-LESFSF-------PYPQWTVKLLSSFSALRSINNYGAFAIMTTRRPEIIIEGSTDGI-EWKEFPFCWKPSDPHKAPVFISPFHPRLDWQ 408
                 222222222.222233.......333344458899********************************.7****************************** PP

        LMF1 360 mwfaalgkyeqnpWllsLlyrLLqnskevlkLlaenPfekkppkyvRaelYkYrftkkeesrargawWtRelvgeyvPpls 440
                 mwfaal++ ++npW+ sLl  LL+++kev+kL++ nPf+ +ppkyvRa  Y Y++++++e++++g wW+R+l g y+Pp s
  CCG92897.1 409 MWFAALSTPKENPWFASLLSCLLHGKKEVIKLFKANPFPFSPPKYVRALIYIYEYSSWSEKKEKGLWWNRTLYGLYFPPAS 489
                 ******999*****************************999*****************9*******************986 PP

>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.9    0.0037        33      38      75 ..      80     117 ..      51     126 .. 0.90
   2 !   17.6   3.7   4.8e-07    0.0043       2      81 ..     167     264 ..     166     268 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0037
        DoxX  38 lpppellaylaalvElvgglllllGlltRlaAlalavt 75 
                 +pp+++ +y+ +++ +++++ll +++++ l++l+l  +
  CCG92897.1  80 IPPTDPILYAGTFLGMFLAVLLFFNIAPALVSLFLWSL 117
                 6889*****************************99765 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 4.8e-07
        DoxX   2 llllRlllgvlfiahGlqkltg..................fglegtaaslaalglpppellaylaalvElvgglllllGlltRlaAlalavtllvatl 81 
                  ++ R+ll  l++++G+ kl+                   + ++  a ++ ++++   e + + + ++Elv++ ++  G+l R ++++l+ +l  +++
  CCG92897.1 167 TFIFRWLLFRLMLLSGIVKLEShdptwraltalkyhyetePLPTPLAWYFYHFPMWFHETTTFIVLFIELVVPFAIFMGRLGRTVSFILFSLLQLLII 264
                 5799*****************988887777776666555544444777777999999******************************99988766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3495.11
//
Query:       CCG92898.1  [L=207]
Description: FMN-dependent NADH-azoreductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-45  153.9   0.0    4.8e-45  153.7   0.0    1.0  1  Flavodoxin_2  Flavodoxin-like fold
    6.4e-06   26.0   0.0    9.8e-06   25.4   0.0    1.3  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.7   0.0   5.4e-49   4.8e-45       2     195 ..       3     201 ..       2     204 .. 0.91

  Alignments for each domain:
  == domain 1  score: 153.7 bits;  conditional E-value: 5.4e-49
                   EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTT.TEEEEEEHHCCT-----CCCCHC.......C.HHHHTTCHHHHHHH.HHHHHCSSEEEEEEE-B CS
  Flavodoxin_2   2 kiLiinahprpeksfssalaqafvealekagp.hevtvrdLyadflpvlttrdlaa.......k.layeekpadveseq.iekllaadaivlqfPlw 88 
                   kiL+i a+pr+++sfs a+a+ f+e++++++p + ++++dL++  lp ++   l+          +++e+k+a+ e e+ i+ + + d++v++fP+w
    CCG92898.1   3 KILYIEASPRKDRSFSIAAAKVFLEEYKANHPtDSIETLDLWTKALPSFDGYILQSkyaifhgLeHTPEQKNAWSEVEEiIAHFISFDKYVFSFPMW 99 
                   9**************************************************999999999875259999966************************* PP

                   TTB--HHHHHHHHHHS-TTTSC.EETTCSSCCCCTTT.TSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHHHHHHHHHTT-EEEEEEEEESCTCCCH CS
  Flavodoxin_2  89 wfgvPailKgwiDrvltagfaf.yteeggegrgggLk.gkkalvivttGgpeesyqerglegaamdellpplrgilgfiGikdvepvlvegvagaed 183
                   +f +P+ lK++iD  +++ ++f yt+++  g  +gL  gkka +i+++Gg+ +  +   +e +  d++lp+++ ilgfiGi+d++ ++veg+  +++
    CCG92898.1 100 NFAIPYRLKHYIDIFVQPTYTFsYTPQE--G-YKGLVvGKKACLICSRGGN-YPEG---TEFQKYDFQLPYVKLILGFIGITDIQQIIVEGTLFEKR 189
                   *************************999..4.355555*************.6555...677789**************************998888 PP

                   HHHHHHHHHHHH CS
  Flavodoxin_2 184 eealaealerle 195
                   e+ l++a  +++
    CCG92898.1 190 EALLEKAMIEAK 201
                   999999987776 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.1e-09   9.8e-06       2     111 ..       3     137 ..       2     155 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.1e-09
                 EEEEEES--STT.-HHHHHHHHHHCCT-T...T-CEEEEETTTS.--..............---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTT CS
     FMN_red   2 kilvisGSlrkg.sntrklaewaaealkea..gaevelidladlilpc............alcdkdlesegqtsddvaellekiaaadaliivtPeYng 85 
                 kil i +S+rk+ s++ ++a++++e+ k++     +e +dl  ++lp             +  +++++++++   +v+e+++   + d  +++ P +n 
  CCG92898.1   3 KILYIEASPRKDrSFSIAAAKVFLEEYKANhpTDSIETLDLWTKALPSfdgyilqskyaiFHGLEHTPEQKNAWSEVEEIIAHFISFDKYVFSFPMWNF 101
                 9*********7769999**********99877455666666666666455544555542223333443336666777********************** PP

                 CE-HHHHHHHHCHT-..........SSCHCCT.T-E CS
     FMN_red  86 sysgllKnalDrlsr.........trgkkelr.gKp 111
                  ++  lK+ +D ++          + g+k l  gK 
  CCG92898.1 102 AIPYRLKHYIDIFVQptytfsytpQEGYKGLVvGKK 137
                 *************87777666666444444443544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1623.35
//
Query:       CCG92899.1  [L=106]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 793.44
//
Query:       CCG92900.1  [L=329]
Description: Opacity protein or related surface antigen [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2157.91
//
Query:       CCG92901.1  [L=162]
Description: Molecular chaperone, HSP20 family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-28   98.9   2.5    2.2e-28   98.4   2.5    1.1  1  HSP20       Hsp20/alpha crystallin family
    7.1e-12   44.7   0.1    1.1e-11   44.1   0.1    1.3  1  ArsA_HSP20  HSP20-like domain found in ArsA
     0.0046   17.0   0.2       0.27   11.3   0.1    2.3  2  FKBP26_C    FKBP26_C-terminal
  ------ inclusion threshold ------
      0.017   16.2   1.0      0.041   14.9   1.0    1.7  1  CS          CS domain
      0.026   14.9   0.0      0.041   14.3   0.0    1.4  1  PIH1_CS     PIH1 CS-like domain
      0.088   12.7   0.6       0.17   11.8   0.6    1.5  1  SpoOE-like  Spo0E like sporulation regulatory protein
       0.14   12.2   0.0        0.2   11.7   0.0    1.2  1  GvpH        GvpH


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   2.5   8.5e-32   2.2e-28       1     101 [.      58     159 ..      58     161 .. 0.94

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 8.5e-32
                 E--SSEEEEEEEEE-TT--CCCEEEEEETTEEEEEEE--......---TT----SS---EEEEEE--STTB-TTT-EEEEETTEEEEEEEBSS--..-- CS
       HSP20   1 dikeeeeefevkldvpglkkeelkvkvednrvlvkgehe....eeeedekglikerssrkFsrkftLPenvdadkvkaslkdGvLtvtvpkkepekkkk 95 
                 di e+++ef vk+d+pg+kkee+kv++++n ++v+ge++    e+++++++++ er+++ Fsr+f+LPe+v++dk++a++kdGvL++++pk e++   +
  CCG92901.1  58 DITEDDKEFLVKMDLPGVKKEEVKVSIQNNILTVSGERKiereEKDKKKRYIRVERAYGAFSRSFELPEGVEEDKISAEFKDGVLYLHMPKGEKA---Q 153
                 6899***********************************99877788889999**************************************9998...7 PP

                 ------ CS
       HSP20  96 erkiqi 101
                 ++++++
  CCG92901.1 154 PKTVEV 159
                 888887 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.1   4.4e-15   1.1e-11       1      62 [.      63     145 ..      63     146 .. 0.97

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 4.4e-15
  ArsA_HSP20   1 ddeyvlkldLPfvdkeeidlsrsgdeLtIkig......................nfrRqitLPsvlarkevtsAkfedgvLeIr 62 
                 d+e+ +k dLP+v+kee+++s++++ Lt++ +                       f+R++ LP+ + ++++ sA+f+dgvL  +
  CCG92901.1  63 DKEFLVKMDLPGVKKEEVKVSIQNNILTVSGErkiereekdkkkryirveraygAFSRSFELPEGVEEDKI-SAEFKDGVLYLH 145
                 67899******************************************************************.*********866 PP

>> FKBP26_C  FKBP26_C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00011      0.27       6      32 ..      65      91 ..      60      96 .. 0.90
   2 ?    3.4   0.0     0.032        83      16      36 ..     128     148 ..     122     152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
                HHHHHHH-TT--..--EEEEETTEEEE CS
    FKBP26_C  6 kelIkryiPnidlekfkieiedktvtI 32
                + l+k+ +P +++e++k++i+++++t+
  CCG92901.1 65 EFLVKMDLPGVKKEEVKVSIQNNILTV 91
                569********************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.032
                 --..--EEEEETTEEEEE--T CS
    FKBP26_C  16 idlekfkieiedktvtIelpe 36 
                 ++ +k+  e++d+++   +p+
  CCG92901.1 128 VEEDKISAEFKDGVLYLHMPK 148
                 7899***************98 PP

>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.0   1.6e-05     0.041       7      74 ..      61     146 ..      56     161 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.6e-05
                 EETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEE.TS.CEEEEECE..................BSS-BETTTEEEEEETTEEEEEE CS
          CS   7 QtldeVvvtiyvkkvnikkkdvkvefkerslkvki.gk.eklliege..................LfgpIdpeesswtieskkveitL 74 
                 ++++e  v+  +++v  kk++vkv+++++ l+v+  +k e++ ++++                  L + ++ ++ s  +++  + +++
  CCG92901.1  61 EDDKEFLVKMDLPGV--KKEEVKVSIQNNILTVSGeRKiEREEKDKKkryirveraygafsrsfeLPEGVEEDKISAEFKDGVLYLHM 146
                 667777788999999..*****************987777776666599999999999999999999999999999888877666665 PP

>> PIH1_CS  PIH1 CS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.6e-05     0.041      31      87 ..      64     139 ..      40     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
     PIH1_CS  31 kelaieielPllksikevklrvgerrlel....................eskk.akyfLslkLpYpvdedkveAkFvk 87 
                 ke+ ++++lP++   +evk+ ++++ l +                    e +   ++  s +Lp  v+edk++A F+ 
  CCG92901.1  64 KEFLVKMDLPGV-KKEEVKVSIQNNILTVsgerkiereekdkkkryirvE-RAyGAFSRSFELPEGVEEDKISAEFKD 139
                 89**********.679*************************999999743.335789999****************86 PP

>> SpoOE-like  Spo0E like sporulation regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   6.7e-05      0.17       3      25 ..      20      43 ..      19      46 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.7e-05
                HHHHHHHHHHHHHHHHC.C--HHH CS
  SpoOE-like  3 keIEelRkeLnelaekk.gltdpe 25
                keIEe+R+++  l e+  +l ++e
  CCG92901.1 20 KEIEEMRRKMASLFERPlELLSSE 43
                79***********88889766554 PP

>> GvpH  GvpH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.7e-05       0.2      97     133 ..      60      94 ..      55     109 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.7e-05
        GvpH  97 sddsdelvvvadlpGvtdedvdvaletdeqaltlrvd 133
                 ++d  e++v  dlpGv  e+v v+++  ++ lt++ +
  CCG92901.1  60 TEDDKEFLVKMDLPGVKKEEVKVSIQ--NNILTVSGE 94 
                 56788999****************99..788998744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1178.70
//
Query:       CCG92902.1  [L=230]
Description: Uncharacterized membrane-associated protein, DedA family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-21   74.7   8.3    1.4e-20   73.9   8.3    1.4  1  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   8.3   7.9e-25   1.4e-20       1     119 [.      46     171 ..      46     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 7.9e-25
  SNARE_assoc   1 lPsevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgr...kalrrkllsekrvkalerlverygflallllrllpivPrdlvnyvaG 90 
                  lP++ l++++G+++     +l++ ++++ l+a+ G+sl+yl+g+++g+   +  ++ +++++++++ e ++ +yg++a++l+r++pi+ r++++++aG
   CCG92902.1  46 LPGDSLVFTLGIFAakgwlNLYTLFFMLTLAAIGGDSLNYLFGNKFGKlfySCSESFFIKKEHIQKTEDFFSKYGAKAIFLSRFIPII-RTFTPFIAG 142
                  699***********999999999***************************9999999*******************************.********* PP

  SNARE_assoc  91 ltrvsfkrFflatfiGsipwalvyaylGs 119
                  + ++ + rF++++++G + w+ +++  G+
   CCG92902.1 143 IGSMAYSRFLFFNIFGGLCWIGLFLGTGY 171
                  ************************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1752.40
//
Query:       CCG92903.1  [L=72]
Description: hypothetical protein MFUM_830009 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       149  (0.00831056); expected 358.6 (0.02)
Passed bias filter:                      136  (0.00758548); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 625.00
//
Query:       CCG92904.1  [L=100]
Description: hypothetical protein MFUM_830010 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       161  (0.00897987); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 731.93
//
Query:       CCG92905.1  [L=354]
Description: Cellulase M or related protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-74  251.1   0.0    1.3e-74  250.9   0.0    1.0  1  Peptidase_M42  M42 glutamyl aminopeptidase
    8.4e-09   35.4   0.0    1.5e-08   34.6   0.0    1.4  1  Peptidase_M20  Peptidase family M20/M25/M40
     0.0023   16.8   0.0      0.026   13.3   0.0    2.4  3  Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)


Domain annotation for each model (and alignments):
>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.9   0.0   2.2e-78   1.3e-74       1     289 [.      46     334 ..      46     336 .. 0.97

  Alignments for each domain:
  == domain 1  score: 250.9 bits;  conditional E-value: 2.2e-78
                    S-EEEEEESSTTSSEEEEEEE--B-EEEEEEEETTSEEEEEEESS--GGGTTTEEEEEEETTEEEEEEEEE--CGGCHHHHHHCT--GCGEEEEGS CS
  Peptidase_M42   1 GnliakkkgkekepkvmiaAHmDeiGfmVkeIkedGflrfekvGGvdpkvlegqrvkiltkkgkisGvigskppHllkeeerkkaleikelfiDig 96 
                    Gn +a+++  e +pk+++ +H+Dei f ++ I+++Gfl f++vGG dpk ++g++v+i+ + + i+Gvig  ++H++++e ++k+++++elfiDig
     CCG92905.1  46 GNAVAYLNP-EGNPKILVNGHIDEIAFQIQYIDDSGFLYFAPVGGPDPKLAKGRKVNIYHEGNSIPGVIGTLAIHMQEKETQEKPPKWSELFIDIG 140
                    889999988.899***********************************************999********************************* PP

                    GSSHHHHHHTTS-TT-EEEES---EEETTECEEETTHHHHHHHHHHHHHHHHHCTSS-S.SEEEEEEESTCTTTSHHHHHHHHHH--SEEEEEEEE CS
  Peptidase_M42  97 akskeeaeelGisvGdivvfdkefvelangkivskalDdragvavllellkelkeeele.atvylvatvqEEvGlrGaktsaekikpdiaiavDvt 191
                    a+sk+ea ++ +++Gd++ +d++f  l n+  +++  Dd++g  +++e+l+   ee+++   ++++ t+qEE Gl Ga+++ ++++pdiai+ Dv+
     CCG92905.1 141 ASSKDEALQY-VQIGDWALYDSSFFPLLNDIWIARGCDDKVGAFAAAEVLRLCYEEKVSgPCIIAASTIQEENGLYGASMIGYSVHPDIAIVFDVG 235
                    **********.************************************************666778889**************************** PP

                    EE-CSTTSTTTTSS...TTS-CEEEEEETTCCSHHHHHHHHHHHHHHTT--EEEE.EESSSSSTHHHHHTSTTTSEEEEEEEEEBSTTSTTEEEEH CS
  Peptidase_M42 192 aagdtpgskekeak...lgkGpvirvkDasgiyhpklrkkllelAkknnipyqle.vlsgggtDAgaihltgegvptalisiptryiHspvevahl 283
                    +a+d p +++k+     lgkGp ++     +i hp+++k l +lA++ +i +q +   ++ gtDA+a+ ++++g+p+ +i+ip ry+Hsp e +hl
     CCG92905.1 236 HATDIPIVDKKKFGdirLGKGPILSHG---SINHPGVVKTLDKLAHQLGITHQHSiDPRRSGTDADALFIQKGGIPSCVIGIPNRYMHSPTEAFHL 328
                    *******9999977899*******999...*************************66899************************************ PP

                    HHHHHH CS
  Peptidase_M42 284 ddleat 289
                    +dle +
     CCG92905.1 329 KDLETA 334
                    ***976 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   2.6e-12   1.5e-08      32     203 ..     173     340 ..     166     344 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 2.6e-12
                    STTTTTTHHHHHHHHHHHHHHHHHTTT-SS.EEEEEEESTTSSTTTHH..HHHHHHHHTTTCESEEEEEEEESSSBTCHSTETEEEE.EEEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Peptidase_M20  32 GrGaddmkggvlaalealralkdegikpkg.tivllfqpdEEggrgGa..kallegleerekvdavfelhieepgileagklaigvv.kvevelle 123
                    +r  +d+k g +aa+e+lr   +e++   g  i  + +  EE   +G   +++++     + v+  + +++ + g+      +i +v k ++ +++
     CCG92905.1 173 AR-GCDDKVGAFAAAEVLRLCYEEKV--SGpCIIAASTIQEE---NGLygASMIG-----YSVHPDI-AIVFDVGHAT----DIPIVdKKKFGDIR 252
                    45.3699*****************86..6768999999****...5555458888.....5566655.3345455555....45666425555554 PP

                    EESHEEEC.....CHHHHHHHHHHHHHHHTSCEEEEEES.SSBHTHHHH....TTTEEEEEEE.SSGGCTTSTTTEEEHHHHHHHHHHHHH CS
                    xxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx....xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 124 ggapvtln.....dsplvkalaeaaeelfgekvelivsg.pggtdarff....agiptvmifg.pgsglaHspnEyvdledlekgikvlar 203
                     g+ + l+     ++ +vk+l + a +l g +++ ++ + + gtda  +     gip+++ +g p+   +Hsp E ++l+dle+++ ++  
     CCG92905.1 253 LGKGPILShgsinHPGVVKTLDKLAHQL-GITHQHSIDPrRSGTDADALfiqkGGIPSCV-IGiPN-RYMHSPTEAFHLKDLETAAFWVSC 340
                    44444444466658999**********9.9998888888889998888888877779774.78799.****************99866655 PP

>> Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.039   2.3e+02     140     161 ..     112     133 ..      95     156 .. 0.75
   2 ?   -2.0   0.0       0.2   1.2e+03     230     253 ..     172     195 ..     165     213 .. 0.74
   3 !   13.3   0.0   4.3e-06     0.026     359     427 ..     271     337 ..     232     342 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.039
                    BB----GGG-GG..GSS--TTT CS
  Peptidase_M18 140 riPnlaiHLdrdineefkfnee 161
                    +i +laiH++++  +e+ +   
     CCG92905.1 112 VIGTLAIHMQEKETQEKPPKWS 133
                    7899*******98777666544 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.2
                    EESSHHHHHHHHHHHHHHCCCCHT CS
  Peptidase_M18 230 faprlDnkvscfaaleallesaed 253
                     a + D+kv++faa e l    e+
     CCG92905.1 172 IARGCDDKVGAFAAAEVLRLCYEE 195
                    57889*********9988554444 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 4.3e-06
                    HHHHHHHHHHC-EEEEEEE-TTS----HCHHHHHHHHT-EEEEEE-EEBSTTSSSEEEECCHHHHHHHH CS
  Peptidase_M18 359 allkevaqkanvklQelvvrndspcGstigpilaaktGirtiDlGaaqlsmHSireltgskdveeavkl 427
                    + l ++a+++++  Q+ +  + +++G+   +++  k Gi    +G++   mHS+ e+   kd+e+a   
     CCG92905.1 271 KTLDKLAHQLGITHQHSI--DPRRSGTDADALFIQKGGIPSCVIGIPNRYMHSPTEAFHLKDLETAAFW 337
                    568899999999999876..6789***************************************988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2701.55
//
Query:       CCG92906.1  [L=50]
Description: hypothetical protein MFUM_830012 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 368.02
//
Query:       CCG92907.1  [L=127]
Description: Lactoylglutathione lyase or related enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-15   57.8   0.0    1.4e-15   57.6   0.0    1.0  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    1.2e-13   51.2   0.0    6.8e-09   36.0   0.0    1.9  2  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
     0.0031   17.6   0.0       0.29   11.2   0.0    2.0  2  Glyoxalase_3  Glyoxalase-like domain
     0.0052   16.7   0.0      0.058   13.3   0.0    2.0  1  Glyoxalase_2  Glyoxalase-like domain
      0.008   17.0   0.0     0.0091   16.8   0.0    1.1  1  Glyoxalase_6  Glyoxalase-like domain
  ------ inclusion threshold ------
      0.086   12.1   0.0      0.095   11.9   0.0    1.2  1  PNP_UDP_1     Phosphorylase superfamily
       0.14   12.2   0.0       0.21   11.7   0.0    1.3  1  CppA_N        CppA N-terminal


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   5.3e-19   1.4e-15       2     128 .]       6     122 ..       5     122 .. 0.95

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 5.3e-19
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGE CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvk 100
                 + h+ l+v+++e+s++F+t vLG+++v+kt   + +++l +  +  ++  iel +++  ++  ++          ++++a++v +++++ ++ ++ g++
  CCG92907.1   6 LLHTRLRVNNIEESIKFFTTVLGMEVVRKTQ-SPRGSILAFLKLPGSDEEIELCYYPGSGKVNVPP--------DLMHLAFEVKNLEQFREHCSKLGYQ 95 
                 78*****************************.8888*****************************9........89999999999999*********** PP

                 EEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase 101 vvaepgrhyfgalysfyfrDpdGillei 128
                 ++++p+ + +g  + f +  pdG+++e+
  CCG92907.1  96 FSDGPTVTSNGTKFAF-IDHPDGYEIEL 122
                 *****99999999977.9999*****96 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   2.7e-12   6.8e-09       2     109 .]       8     111 ..       7     111 .. 0.87
   2 !   19.4   0.0   3.8e-07   0.00097       1      54 [.      73     124 ..      73     127 .] 0.78

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 2.7e-12
                   EEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETTEEEEEEE.ESSTT-THHHTS-EEEEEEEEES-HHHHHHHHCTTTEEEEEEE CS
  Glyoxalase_4   2 QigivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgsvqieLie.plegpeflaehgeglhhlaywvddldaavarleeqGfevvqkg 97 
                   ++ + V+++e+ +++f+++lG+++ ++ +++  ++ laf++l +++ +ieL   p +g+    +  + l hla++v++l++  +++ + G+++ + g
    CCG92907.1   8 HTRLRVNNIEESIKFFTTVLGMEVVRKTQSPRGSI-LAFLKLPGSDEEIELCYyPGSGK---VNVPPDLMHLAFEVKNLEQFREHCSKLGYQFSD-G 99 
                   66778******************999998877666.9*******999***985255552...35789*************************777.7 PP

                   E-GGGTT-EEEE CS
  Glyoxalase_4  98 vragaagrrfay 109
                   + ++ +g++fa+
    CCG92907.1 100 PTVTSNGTKFAF 111
                   788899*****8 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 3.8e-07
                   EEEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETTEEEEEEE CS
  Glyoxalase_4   1 dQigivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgsvqieLie 54 
                   +++++ V++le+  +++s+ lG+++++  ++++ + + af ++ +g  +ieLie
    CCG92907.1  73 MHLAFEVKNLEQFREHCSK-LGYQFSDGPTVTSNGTKFAFIDHPDG-YEIELIE 124
                   5788888888888888887.88888888888888888888888887.7888887 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00011      0.29       3     115 ..       8     110 ..       6     111 .. 0.77
   2 !   10.5   0.0   0.00019       0.5       3      53 ..      74     124 ..      72     127 .] 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
  Glyoxalase_3   3 HvvlavpdleeaaarfarrlGftvtpggehpglgtaNalvmf.gdg.YlEllavdpeapaperprlfgldrlakgeglhtlalrtddidataarlra 97 
                   H+ l v+++ee ++ f++ lG++v+ + + p+ g+  a + + g +  +El  +  + +            ++ ++ l++la++++++++ +++  +
    CCG92907.1   8 HTRLRVNNIEESIKFFTTVLGMEVVRKTQSPR-GSILAFLKLpGSDeEIELCYYPGSGK------------VNVPPDLMHLAFEVKNLEQFREHCSK 91 
                   77778889999999999999999999988888.88888888843335788777633333............45689999***************999 PP

  Glyoxalase_3  98 aGvd.eagrrvrpdggdlr 115
                    G++ ++g +v+  g++ +
    CCG92907.1  92 LGYQfSDGPTVTSNGTKFA 110
                   9999877777777776655 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00019
  Glyoxalase_3   3 HvvlavpdleeaaarfarrlGftvtpggehpglgtaNalvmfgdgY.lElla 53 
                   H+ + v++le+ ++++  +lG ++ +g   ++ gt+ a ++ +dgY +El++
    CCG92907.1  74 HLAFEVKNLEQFREHC-SKLGYQFSDGPTVTSNGTKFAFIDHPDGYeIELIE 124
                   999999*********9.9*************************998799886 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.3e-05     0.058       6     115 ..      11     124 ..       7     126 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
                   -EES-HHHHHHHHHHTT---E....EEE-SSEEEETTS-EEEEHHHHHH--.-----S--SS-EEEEEES-HHHHHHHH..GGGS-EEEEEEE-TTS CS
  Glyoxalase_2   6 lvvkdieeskkFYedvlelki....kldfGenvsfetgfalkedlkelinl.desiaeqsnnfeLyFevedvdaflqklkeaeniellhelkekpWg 97 
                   l v++iees kF+  vl +++    +   G+ + f       e+++      + +++   + ++L Fev+++++f ++  + +  ++   +++   g
    CCG92907.1  11 LRVNNIEESIKFFTTVLGMEVvrktQSPRGSILAFLKLPGSDEEIELCYYPgSGKVNVPPDLMHLAFEVKNLEQFREHCSKLG-YQFSDGPTVTSNG 106
                   56999***********9987722114456888888766666666654443323477778999****************98887.9999999999999 PP

                   -EEEEEE-TT--EEEEEE CS
  Glyoxalase_2  98 qrvirfyDpDkhiiEige 115
                    + + +  pD+  iE+ e
    CCG92907.1 107 TKFAFIDHPDGYEIELIE 124
                   999999999*99999865 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.5e-06    0.0091       5      89 ..      12     102 ..       8     123 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.5e-06
  Glyoxalase_6   5 daadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpe...................paknrvHldlavedldaevarlvalGAr 82 
                    +++ ++ ++F+ ++lg+ev+r+    ++         ++  l+f + p                    p  + +Hl ++v++l++  +++ +lG +
    CCG92907.1  12 RVNNIEESIKFFTTVLGMEVVRKT---QS--------PRGSILAFLKLPGsdeeielcyypgsgkvnvpP--DLMHLAFEVKNLEQFREHCSKLGYQ 95 
                   56788999****************...22........34458999999999999*****98876655422..35***********999999999966 PP

  Glyoxalase_6  83 vlreprd 89 
                     + p  
    CCG92907.1  96 FSDGPTV 102
                   6655555 PP

>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.7e-05     0.095     112     153 ..      52     106 ..      15     110 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.7e-05
                 C....TCCCCTTSSEE--HHHHHHHHH.........CHHTTTTTEEEEEEEEESE CS
   PNP_UDP_1 112 e....gqyfpdsydapadpelrallke.........aaealgikvhrGvvatadg 153
                 +      y+p+s ++ + p+l +l++e         ++++lg+++  G+++t++g
  CCG92907.1  52 DeeieLCYYPGSGKVNVPPDLMHLAFEvknleqfreHCSKLGYQFSDGPTVTSNG 106
                 14455689********************************************998 PP

>> CppA_N  CppA N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.1e-05      0.21       5      29 ..      10      34 ..       6      48 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.1e-05
      CppA_N  5 vlrvnnrdlniafyqetlGlkllse 29
                 lrvnn ++ i+f+   lG+ ++ +
  CCG92907.1 10 RLRVNNIEESIKFFTTVLGMEVVRK 34
                69*******************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 978.74
//
Query:       CCG92908.1  [L=225]
Description: Pentose-5-phosphate-3-epimerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-48  164.0   0.0    3.3e-48  163.7   0.0    1.0  1  Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family


Domain annotation for each model (and alignments):
>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   0.0   1.8e-52   3.3e-48      10     198 .]      14     202 ..       5     202 .. 0.96

  Alignments for each domain:
  == domain 1  score: 163.7 bits;  conditional E-value: 1.8e-52
                     -GGGHHHHHHHHHHTT-SEEEEEEEBSSSSS-B-B-HHHHHHHGGGE-S-EEEEEESSSHHHCHHHHHHCT-SEEEEE-ST-TTHHHHHHHHHHT CS
  Ribul_P_3_epim  10 dfarlgeevkaveeagadllHvDvmDghfvpNltigplvvealrkltelpldvHLmveevdrivpefaeagasiisvHaEalehlkrtiqeikea 104
                     +  +l +e++++e   ++++HvDvmDghfvpNl+igp  + alr++t+lp++vHL+++++dr++ +f+eaga+++ vH E+ + +++ti+ i+ +
      CCG92908.1  14 NPFQLPKEIQKAEIMRCNSIHVDVMDGHFVPNLSIGPDFIAALRSMTDLPIEVHLLIQQPDRFARDFIEAGADLLIVHLESHHDIQKTINLIRGL 108
                     667899***************************************************************************************** PP

                     TSEEEEEE-TT--GGGGTTTCCC-SEEEEESS-TT-SS----CCHHHHHHHHHHHHHHHT---EEEEESS--TTTCHHHHHHT--EEEESHHHH CS
  Ribul_P_3_epim 105 GakaglvlnpatplealeyllekldlvllmsvePgfgGQkFipevlekikkvrklidekeldlkievDGGvkldnieqiaeagadvlVagsavf 198
                     G++ gl+lnp t  e   + l++l+++l + ++       F pe l+ki+k+++  ++++l+ +i+v+GG+++++i   + aga++lV  s +f
      CCG92908.1 109 GCRCGLALNPLTLFEKSIKYLPQLQAILFLISNFPPKIHPFQPEKLSKIRKAKEFREKNNLNFEIQVEGGLSAQTIPSTVIAGANTLVLESSFF 202
                     ***************99999*******999888777889**************************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1736.62
//
Query:       CCG92909.1  [L=506]
Description: putative aldehyde dehydrogenase dhaS [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-186  619.5   0.0   3.3e-186  619.3   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  619.3   0.0  1.8e-190  3.3e-186       1     462 []      37     502 ..      37     502 .. 0.99

  Alignments for each domain:
  == domain 1  score: 619.3 bits;  conditional E-value: 1.8e-190
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH..HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafk..awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaid 95 
                 wv++ s +t+++++Patge++a+v++a++edvd+av+aA+eaf+   wak+++++R++++ k+adl+ee+ eela++e+l++Gkp+a a+  +++ +id
  CCG92909.1  37 WVDAVSgKTFPTYDPATGEILAHVAEADKEDVDKAVKAAREAFEkgPWAKMTPSDRGKLIWKLADLIEENLEELAQIESLDNGKPMAVAKVaDLPLSID 135
                 999999777***********************************777**************************************************** PP

                 HHHHHHHHHHHHSEEEEEEC....TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE-- CS
      Aldedh  96 vlryyaelaeklegevlpss....egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvt 190
                  +ry+a++a+k+eg+++p s    e+  +++ reP+Gvvg+I+PWNfPll+aawkl pala+G+t+vlKPae+tplsal l el+++ag+P+gv+n+++
  CCG92909.1 136 LFRYMAGWATKIEGNTIPFSlakpETFVSYTIREPIGVVGQIIPWNFPLLMAAWKLGPALATGCTIVLKPAEQTPLSALWLGELIQQAGFPDGVVNILP 234
                 ****************99977899999************************************************************************ PP

                 SSTCCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHH CS
      Aldedh 191 gsgsevgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefvekl 289
                 g g+++g+a+++h ++dkv+ftGstevg+ i+kaaa+nlk+v+lElGGk+p+iv++daDl  a+ +++ ++f+n GQ C+a+srl+v+++++d++ve +
  CCG92909.1 235 GFGETAGAAIASHMDIDKVAFTGSTEVGKIIVKAAASNLKKVSLELGGKSPNIVFSDADLSTAIPGAASAIFFNHGQCCCAGSRLYVEKKVFDKVVEGV 333
                 *************************************************************************************************** PP

                 HHHHHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHH CS
      Aldedh 290 veaakklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaie 388
                  e+akk+++g +ld++t++GPl+s++q+++v +y+ ++++eg ++++Gg   ++  e+gyf++Pt++++v++dm+i++eEiFGPV++ ++f+ ++e+  
  CCG92909.1 334 SEEAKKIRLGPGLDPATQMGPLVSQEQFDRVSSYIRSGISEGGRVITGG---NRYGERGYFIQPTIFSGVHSDMKIVNEEIFGPVVCAMPFEGVDEIAP 429
                 *************************************************...77899****************************************** PP

                 HHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 389 iaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 +aN+t yGLaag++t+d+++a+r+a++l+aG+v+iN++++++a   pfgG+kqSg+Gre+g+++le+y+e+k+v
  CCG92909.1 430 VANQTIYGLAAGIWTNDISKAHRLASKLKAGTVWINCYNVFDAAL-PFGGYKQSGWGREMGHAVLENYLETKSV 502
                 *********************************************.**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3489.87
//
Query:       CCG92910.1  [L=335]
Description: Alpha/beta hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00062   19.5   0.5       0.22   11.2   0.2    2.3  2  Abhydrolase_1  alpha/beta hydrolase fold
     0.0072   15.8   0.0      0.015   14.8   0.0    1.5  1  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.099   11.9   0.0       0.29   10.3   0.0    1.8  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.2   3.6e-05      0.22       1     106 [.     105     222 ..     105     246 .. 0.83
   2 !    6.3   0.0    0.0011       6.5     213     253 ..     273     312 ..     258     316 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.6e-05
                    SEEEEE-STTT.CGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB...........CHHSHHHHHHHHH..HH....HHHCTTSSEEEEE CS
  Abhydrolase_1   1 pvlvilhGlpg.ssdvwaerglapaLakdgfdvillDlrGvgySspapacin..........ddygtasvaddld..ri....ldalgddkltlvG 79 
                    p++++lhGl+  s+  +++  +++ L+ +g+  +++ l+ + + +pa+ +            ++++t  ++ ++   +i    l   g   +  +G
     CCG92910.1 105 PTMILLHGLLSlSLKGYIK--WVRWLNNKGWNGVIMHLPYHFQRKPASFSLFspscvqpniiHTMET--LRQSVIdlYIftkgLYLMGSPMIGAWG 196
                    689********99999***..********************99999998766777777888876666..444443377788988888888888*** PP

                    ETHHHHHHHHHHHHHGGGEEEEEEESE CS
  Abhydrolase_1  80 hSmGGmialayaaeyperVkalvllga 106
                     S+GG + +++a++ +   ++l+l+++
     CCG92910.1 197 ISYGGWTITQAASLEKT-FHKLILVEP 222
                    *************9666.888888887 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0011
                    EEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHH CS
  Abhydrolase_1 213 ptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlaf 253
                    ++l+++g+ Dp+ pp  l ++++++   +++ i + gHl +
     CCG92910.1 273 NILIVGGQFDPISPPWILKKIQEKWEA-KHLYILPVGHLNY 312
                    79*************************.9999999999865 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.5e-06     0.015      63     159 ..     189     287 ..     177     298 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.5e-06
                   GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTS...THHHCCCC--TTT..CHHHHHHHHHH-CGGG-----EEEEEEETT- CS
  Peptidase_S9  63 serlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdl...lteeymewgnpee..neegykelspyspldnvkaypplLlihGlaD 154
                   s  ++++G SyGG+++  a+    ++F+ ++ + p ++  +    + +   + ++    g + +  +++ + ++ + s  +   +  ++L++ G+ D
    CCG92910.1 189 SPMIGAWGISYGGWTITQAAS-LEKTFHKLILVEPLLNIQHVIWGSPIgkeIRRKLKRLGISHSetEPHLRLACPSFSIPKV--RGDNILIVGGQFD 282
                   55699***************9.9************99998887776666655555555555544223333333333333333..5666666666666 PP

                   SSS-T CS
  Peptidase_S9 155 drvpp 159
                      pp
    CCG92910.1 283 PISPP 287
                   65555 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   4.9e-05      0.29      77     133 ..     191     246 ..     102     263 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.9e-05
  Hydrolase_4  77 plfllGhSmGGliallyllrypdkvaglilsaPalkikaklkappllklllkllgkl 133
                   +  +G S GG + ++++  ++  +++lil+ P+l+i++ +  +p+ k +++ l++l
   CCG92910.1 191 MIGAWGISYGGWTITQAASLEKT-FHKLILVEPLLNIQHVIWGSPIGKEIRRKLKRL 246
                  45679*************99999.9************97654667766666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2336.00
//
Query:       CCG92911.1  [L=392]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-21   74.2   0.0    1.4e-20   73.6   0.0    1.2  1  FIST_C    FIST C domain
    1.3e-16   61.1   0.0    4.6e-15   56.1   0.0    2.5  2  FIST      FIST N domain


Domain annotation for each model (and alignments):
>> FIST_C  FIST C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   1.5e-24   1.4e-20       1     130 []     227     374 ..     227     374 .. 0.85

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1.5e-24
      FIST_C   1 Alevylell...geedeelaqsalfplgleel.......ggdflvrhllgvdpedgslaladdveeGqrlqlmlrdaealiedlerlleea....ake. 84 
                 A+++++++    +e+++  +q +l ++gl++        +gdf++r++lg+dp +g++a+++  + Gq++q +lrd++++   l+++lee     a + 
  CCG92911.1 227 AYQALAKAFdslSEKERLAVQGHL-FIGLAVSeyleefkQGDFIIRNILGADPSTGAIAIGALARIGQTVQYQLRDPASATLSLQKVLEEEklkvA-Sr 323
                 667777777875555555555599.999988899*****************************************************887744431.13 PP

      FIST_C  85 .....gallfsCigRglgl.gedadeelqavrealgdgvplaGfftyGEigp 130
                      ++l   C gRg+ l g++a+ +++ v+++ ++g+p aGff++GEigp
  CCG92911.1 324 kvapyAVLQAICTGRGKNLfGPSANVDAKSVQDY-FPGIPQAGFFANGEIGP 374
                 455668999*************************.567************97 PP

>> FIST  FIST N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   5.1e-19   4.6e-15      29     170 ..      66     223 ..      11     225 .. 0.64
   2 ?    2.1   0.0     0.019   1.7e+02      19      44 ..     352     378 ..     342     391 .. 0.72

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 5.1e-19
        FIST  29 pliGcstageiasegleledgvvalalasa.......da..ageelakal.............pkl...lllladglssneeellegldealaspdvpi 102
                 +li   ++g+++ +g e e++    +l++        +   + ++l ++l             p +    + +++  ++ +e +l+ l+   a+p++p 
  CCG92911.1  66 ELILIASSGIVG-QGIENEGQA-SFSLMLLhhealkvQGipIDTQLIDSLeivdnwksivsfdP-SqikGFAVFSEPNFPIERFLKYLN--QAYPNIPA 159
                 334444555554.344444442.22332222333333113333333333355555554455551.0456777787779***********..6678**** PP

        FIST 103 vGGlagdgtlafktyvlf.nggvledgvvvvllsgeslevgtavsqgyrpigkpfvVTkaegnvileLd 170
                 +GG+  +   ++  ++++ n++ + +g+++v l g+ ++++++vsq +rpig+p+ +T ae n++++L 
  CCG92911.1 160 WGGIPNGK--EN-EPCIYyNRKPI-SGCLLVPLAGD-IQLDVIVSQACRPIGEPYMITNAEQNILYTLG 223
                 ***75555..33.456666*****.9**********.******************************96 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.019
        FIST  19 ealrealpgapliGcstageiase.gl 44 
                 + +++ +pg+p +G  ++gei+++ g+
  CCG92911.1 352 KSVQDYFPGIPQAGFFANGEIGPSwGM 378
                 45999****************553333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2840.90
//
Query:       CCG92912.1  [L=54]
Description: hypothetical protein MFUM_840004 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       103  (0.00574488); expected 358.6 (0.02)
Passed bias filter:                       96  (0.00535445); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 406.91
//
Query:       CCG92913.1  [L=516]
Description: ATP-dependent protease Clp, ATPase subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-37  126.8   0.2    4.6e-36  124.5   0.0    2.1  2  AAA_2            AAA domain (Cdc48 subfamily)
    2.6e-16   60.2   0.2    1.1e-14   55.0   0.0    2.9  3  AAA              ATPase family associated with various cellul
    1.1e-09   38.3   1.4    1.5e-08   34.5   0.0    3.0  3  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    9.6e-06   26.1   0.1    7.9e-05   23.1   0.0    2.4  3  AAA_16           AAA ATPase domain
    7.4e-05   21.9   0.1    0.00016   20.9   0.1    1.4  1  MCM              MCM P-loop domain
     0.0002   21.4   0.0    0.00082   19.4   0.0    2.1  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00037   20.8   0.8      0.011   16.0   0.2    3.1  2  AAA_22           AAA domain
     0.0006   19.6   0.0     0.0016   18.2   0.0    1.7  1  IstB_IS21        IstB-like ATP binding protein
    0.00065   19.4   0.0      0.048   13.4   0.0    2.5  1  Sigma54_activat  Sigma-54 interaction domain
      0.002   17.9   0.0     0.0056   16.4   0.0    1.8  1  AAA_24           AAA domain
     0.0022   18.5   0.7       0.26   11.8   0.0    2.7  2  AAA_18           AAA domain
     0.0024   17.9   0.3      0.072   13.1   0.0    3.0  2  AAA_14           AAA domain
     0.0024   17.3   0.0       0.16   11.3   0.0    2.8  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0028   17.6   0.3       0.16   11.8   0.0    2.9  3  RsgA_GTPase      RsgA GTPase
  ------ inclusion threshold ------
      0.016   15.2   0.0      0.035   14.1   0.0    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.023   14.6   0.1       0.11   12.4   0.0    2.2  2  NACHT            NACHT domain
      0.036   13.8   0.0      0.092   12.5   0.0    1.7  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.048   13.9   0.1       0.17   12.1   0.0    2.0  2  AAA_28           AAA domain
      0.059   13.9   0.0       0.28   11.7   0.0    2.1  2  ABC_tran         ABC transporter
       0.06   13.7   1.2       0.31   11.4   1.1    2.3  1  ATP-synt_F       ATP synthase (F/14-kDa) subunit
      0.062   13.5   0.0       0.16   12.1   0.0    1.8  1  AAA_33           AAA domain
       0.12   11.9   0.0       0.21   11.1   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
       0.14   12.0   0.9         12    5.8   0.3    2.4  2  FATC             FATC domain
        0.3   11.1   3.8         22    5.1   1.7    2.9  3  DUF87            Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.0   6.1e-39   4.6e-36       4     171 .]      99     300 ..      97     300 .. 0.94
   2 ?   -1.1   0.2       2.4   1.8e+03      41      63 ..     409     431 ..     393     464 .. 0.55

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 6.1e-39
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHH CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrd 98 
                  +ill+gp+gvGkt+l + la+ + v    +++ ada+++ e    + +ve lv +li++++g+++ ++ Giv+lDE+dK ++++ +g+dvS+ gVq  
  CCG92913.1  99 QNILLVGPSGVGKTYLVRCLADCIGV----PMVKADATKFSEtgyvGADVEDLVRELIQQAEGDTEIAQYGIVYLDEVDKLASSNMIGRDVSGRGVQSN 193
                 69***********************8....********************************************************************* PP

                 HHHHHH--EE-.....................------EE-TT-EEEEEE--TTHHHHTTTS-S.............TTTTSGGG--HHHHHHTT--HH CS
       AAA_2  99 LLqileggtlt.....................dkqgrkvdtknilfImtgafgsskisdesrsk.............eeeeekkkeeveeelkkglipE 163
                 LL++le++ +                       +  ++++t++ilfI++gaf+   ++ ++r++                +   + ++ + +++gl pE
  CCG92913.1 194 LLKLLEETDVPvkaaydvlgqmqsifdfqrglRSLRKTINTRYILFILSGAFEKLSEIVQRRIRrshlgfqphgpekVVADLISEATTADFVEYGLEPE 292
                 *******************************978888*****************99999999999*******9998545555667778899******** PP

                 HHTT--EE CS
       AAA_2 164 llgRlpei 171
                 ++gRlp++
  CCG92913.1 293 FIGRLPVR 300
                 *****985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.4
                 GG-------THHHHHHHHHTTT- CS
       AAA_2  41 selleeeevehlvsrligappgy 63 
                 ++  e+ee+e+ + ++  +++  
  CCG92913.1 409 KKTKEKEEIEQFLHEFYKSNEIR 431
                 33333444444444433333333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.51   3.8e+02      96     125 ..      66      93 ..      33      99 .. 0.78
   2 !   55.0   0.0   1.5e-17   1.1e-14       1      99 [.     101     204 ..     101     259 .. 0.83
   3 ?   -1.1   0.1       3.1   2.3e+03      42      52 ..     413     423 ..     382     458 .. 0.57

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.51
                 TTTSSSTEEEEEEESSGGGSTHHHHSTTSS CS
         AAA  96 vkkkeskvivigatnrpdkldpallrgRfd 125
                 +++  +kv+ ++++ +++++++al+ gR  
  CCG92913.1  66 QEE-AKKVLSVAVCDHYNQVKEALM-GRGP 93 
                 222.467******************.8865 PP

  == domain 2  score: 55.0 bits;  conditional E-value: 1.5e-17
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTHH.HHHHHHHHHHHHHTS...TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsell.skyvges.ekkirelfkeakeka...kpsilfiDEidalaksrsgseseeeervvnqLlteld 94 
                 +ll+Gp G+GKT+l++ +a  +gv++++ +++++    yvg+  e+ +rel+++a+      +  i+ +DE+d+la+s+  + + +++ v++ Ll+ l+
  CCG92913.1 101 ILLVGPSGVGKTYLVRCLADCIGVPMVKADATKFSeTGYVGADvEDLVRELIQQAEGDTeiaQYGIVYLDEVDKLASSNMIGRDVSGRGVQSNLLKLLE 199
                 69*********************************5569997527789*******877788556***************88899999***********9 PP

                 HTTTS CS
         AAA  95 gvkkk 99 
                 + +  
  CCG92913.1 200 ETDVP 204
                 98765 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 3.1
                 HHHHHHHHHHH CS
         AAA  42 sekkirelfke 52 
                  +++i++++ e
  CCG92913.1 413 EKEEIEQFLHE 423
                 22233333333 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       4.3   3.2e+03      48      66 ..     224     238 ..     197     257 .. 0.66
   2 !   34.5   0.0   2.1e-11   1.5e-08       1      61 [.     306     370 ..     306     380 .. 0.86
   3 ?    0.8   0.3      0.68     5e+02      22      45 ..     426     449 ..     396     453 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4.3
                    BTCCHHHHHHHHTHHHHHH CS
  ClpB_D2-small  48 GARpLrriiqreiedplae 66 
                    G R+Lr++i     ++   
     CCG92913.1 224 GLRSLRKTI----NTRYIL 238
                    445555444....444444 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 2.1e-11
                    SCHHHHHHHHHH....HHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTH CS
  ClpB_D2-small   1 LtkeelkkIvdl....alkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreie 61 
                    L+ e+l ++++      lk+ +  +++ g+el++t+eal+ +aek++++ +GAR+L +i ++ + 
     CCG92913.1 306 LDAEDLFHVLRDsegsILKQYKSSFAAYGIELKFTEEALRLIAEKAIEEGTGARGLMTICEKILR 370
                    677888888888777566666677788********************************999876 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.68
                    CTTTEEEEEHHHHHHHHHHHTSBT CS
  ClpB_D2-small  22 kergvelevtdealdalaekgydp 45 
                    k++++++ +++ea++al +++ ++
     CCG92913.1 426 KSNEIRIIFQNEAIEALKQEAQER 449
                    346788888888888888777654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.1e-07   7.9e-05      24      91 ..      92     161 ..      80     208 .. 0.71
   2 ?   -0.4   0.0       1.8   1.3e+03      41      90 ..     225     280 ..     223     330 .. 0.75
   3 ?   -2.8   0.0        10   7.4e+03     132     132 ..     427     427 ..     380     456 .. 0.54

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.1e-07
      AAA_16  24 p......elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaes 91 
                 +      +++ll+G+sGvGK+ lvr+l++ +       ++++++++ s++ y+   ++ l r el++q + ++e 
  CCG92913.1  92 GpvhyvkQNILLVGPSGVGKTYLVRCLADCIGVP---MVKADATKF-SETGYVGaDVEDLVR-ELIQQAEGDTEI 161
                 445555689*******************866655...377777777.666775557777745.777777777443 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.8
      AAA_16  41 vrellralekdggif.lrgkcdql....esaipysa.laqalareellrqlldeae 90 
                 +r+l++ +++++++f l+g +++l    ++ i++s+   q    e+++++l +ea+
  CCG92913.1 225 LRSLRKTINTRYILFiLSGAFEKLseivQRRIRRSHlGFQPHGPEKVVADLISEAT 280
                 67889999999988888888888844444445555555555555555555555544 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 10
      AAA_16 132 r 132
                 +
  CCG92913.1 427 S 427
                 2 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   2.1e-07   0.00016      21     135 ..      58     177 ..      41     181 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.1e-07
                 HSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCS.....S-EEEEEESSTSTHHHHHHHHHHHSSS.EEEEESSSSSSSHSSSEEEEESSSSSEEEE CS
         MCM  21 siapsiyghedvkkaillqlfggvkkkledktklrg.....dinvllvgdpgtaKsqlLkyveklapr.avytsgkgssaagLtaavvrdeetgefvle 113
                 ++ + ++ +e+ kk + +++   +++ +e     rg     + n+llvg +g++K+ l++ +++++    v + +++ s++g + a v d   + +   
  CCG92913.1  58 YLDRFVIKQEEAKKVLSVAVCDHYNQVKEA-LMGRGpvhyvKQNILLVGPSGVGKTYLVRCLADCIGVpMVKADATKFSETGYVGADVEDLVRELIQQA 155
                 555566777778887777777777754444.4445511112568******************99886515677888999*********99999989999 PP

                 ETHHHHTTTSEEEEESGGGSTC CS
         MCM 114 aGalvladkGvcciDefdkmke 135
                  G   +a+ G++++De+dk  +
  CCG92913.1 156 EGDTEIAQYGIVYLDEVDKLAS 177
                 9******************876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.1e-06   0.00082       1      79 [.     100     178 ..     100     206 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.1e-06
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--.H CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEverae.s 79 
                 ++lLvGp+G+gK+ l++ la  ++ +++    t++ ++  +   +e +  ++  ++ +  +++ +  i++lDEv+++  s
  CCG92913.1 100 NILLVGPSGVGKTYLVRCLADCIGVPMVKADATKFSETGYVGADVE-DLVRELIQQAEGDTEIAQYGIVYLDEVDKLAsS 178
                 689********************99988888888877777766666.233333444555566668889999999998744 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   1.5e-05     0.011       5      51 ..      98     135 ..      94     208 .. 0.76
   2 ?   -1.8   0.0       4.5   3.4e+03      59     117 ..     400     426 ..     379     455 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.5e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst 51 
                 ++ ++++G+sG+GKT+l+r l++           +++ v+ ++++ +
  CCG92913.1  98 KQNILLVGPSGVGKTYLVRCLADCI---------GVPMVKADATKFS 135
                 6789***************999876.........6666666666655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.5
      AAA_22  59 ellralglelkaerlsseellealeqalraravielliiDEaqhlrseealeeLrslln 117
                 ++l+++++ +k+   +++                             ee+ ++L+++++
  CCG92913.1 400 KILKEMDEAKKT---KEK-----------------------------EEIEQFLHEFYK 426
                 444444444444...222.............................333333333333 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.2e-06    0.0016      47      75 ..      98     130 ..      82     176 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.2e-06
   IstB_IS21  47 kenivllGpsGvGKshl....aialgveavrag 75 
                 k+ni+l+GpsGvGK++l    a  +gv  v+a+
  CCG92913.1  98 KQNILLVGPSGVGKTYLvrclADCIGVPMVKAD 130
                 79**************82222445566666654 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   6.4e-05     0.048      18     107 ..      94     177 ..      77     205 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.4e-05
                      HCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TT.CHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEEETGGGS-H CS
  Sigma54_activat  18 vaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipee.lleseLFGhekGaFtGAekekkGlfekadgGtlfLDeigelpl 107
                      v   + ++l++G sG+GK++l r++ +       p+v+ + ++++e+  + ++    ++       ++ +G  e a+ G+++LDe+ +l  
       CCG92913.1  94 VHYVKQNILLVGPSGVGKTYLVRCLADCIG---VPMVKADATKFSETgYVGAD----VEDLVRELIQQAEGDTEIAQYGIVYLDEVDKLAS 177
                      5566789****************9987554...77888887777665233333....3444455667778999999999999999999875 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.5e-06    0.0056       2      79 ..      98     177 ..      97     193 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.5e-06
      AAA_24   2 klkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie.swedfldevvel...aaeladyktlviDtidelee 79 
                 k++il++Gpsg+GKT+l++ l  + + + + k ++++++ +  ++   +ed++ e+ +    ++e a+y ++ +D +d+l +
  CCG92913.1  98 KQNILLVGPSGVGKTYLVRCL-ADCIGVPMVK-ADATKFSETGYVGaDVEDLVRELIQQaegDTEIAQYGIVYLDEVDKLAS 177
                 689******************.7777776666.3344444444443567777777777778889999999999999999865 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00035      0.26       1      37 [.     101     153 ..     101     199 .. 0.72
   2 ?    4.3   0.2     0.072        54      39      88 ..     415     463 ..     395     473 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00035
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf................gvnlrdvakengl 37 
                 Ill G++GvGKt l + L++  g+                g  + d+++e   
  CCG92913.1 101 ILLVGPSGVGKTYLVRCLADCIGVpmvkadatkfsetgyvGADVEDLVRELIQ 153
                 99****************77545566666666667777776666666666544 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.072
      AAA_18  39 levdpe..aldeskrldedkldklldaleenssaleegknlvidghlaeles 88 
                 +e +++  ++ +s+++++ +++++++al++ +   +e +  v+d + +++  
  CCG92913.1 415 EEIEQFlhEFYKSNEIRIIFQNEAIEALKQEA---QERGISVLDLCKEKFKN 463
                 333444667999******************86...47777799988777655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   9.6e-05     0.072       4      77 ..     100     176 ..      97     259 .. 0.67
   2 ?    1.5   0.1      0.39   2.9e+02      70     108 ..     405     445 ..     382     488 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.6e-05
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla....dpekllelileklke....ekktylflDEiqevp 77 
                  ++++G+  vGKT+l++ l++        +  ++ d  ++++      d e+l +++ +++++     +  +++lDE+ ++ 
  CCG92913.1 100 NILLVGPSGVGKTYLVRCLADCIG-----VPMVKADATKFSETGyvgaDVEDLVRELIQQAEGdteiAQYGIVYLDEVDKLA 176
                 6899************99996555.....3444444444422221111333455444444322566777778******9983 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.39
      AAA_14  70 lDEiqev...pewekalkslvdegknldvivtGSnskllske 108
                 +DE+++    +e+e++l ++++++ ++++i+   +   l++e
  CCG92913.1 405 MDEAKKTkekEEIEQFLHEFYKSN-EIRIIFQNEAIEALKQE 445
                 455555544456777788888777.77777766555555555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.6   1.2e+03       5      24 ..      63      82 ..      61      93 .. 0.82
   2 !   11.3   0.0   0.00022      0.16      23      46 ..      99     122 ..      95     145 .. 0.80
   3 ?    2.2   0.0      0.14     1e+02      97     119 ..     154     176 ..     145     181 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.6
  Mg_chelatase  5 vkGqeeakraleiaaaGgHn 24
                  v+ qeeak++l +a++ + n
    CCG92913.1 63 VIKQEEAKKVLSVAVCDHYN 82
                  7889**********987665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00022
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlpsll 46 
                    n+llvGp+G GKt l ++l+  +
    CCG92913.1  99 QNILLVGPSGVGKTYLVRCLADCI 122
                   69*****************98754 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.14
  Mg_chelatase  97 pkpGeislahnGvLfLDElpefk 119
                      G+   a+ G+++LDE+ ++ 
    CCG92913.1 154 QAEGDTEIAQYGIVYLDEVDKLA 176
                   5679999***********98765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00022      0.16      99     122 ..      98     121 ..      57     139 .. 0.85
   2 ?   -1.7   0.1       3.1   2.3e+03      59      99 ..     408     448 ..     395     456 .. 0.48
   3 ?    2.4   0.0      0.18   1.3e+02      39      72 ..     468     501 ..     453     513 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00022
                  TSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpe 122
                  ++ ++lvG+SGvGK+ L+  l+  
   CCG92913.1  98 KQNILLVGPSGVGKTYLVRCLADC 121
                  467899************999865 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.1
                  --HHH...HHHHHH.HHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  59 leeee...eleelk.eelealgyevllvsaktkegleelkellkd 99 
                  +++++   e+e++  e +++ ++++++     +e++e+lk++ ++
   CCG92913.1 408 AKKTKekeEIEQFLhEFYKSNEIRIIFQ----NEAIEALKQEAQE 448
                  4444411133333202233333444443....4557777776666 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.18
                  HHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHH CS
  RsgA_GTPase  39 LvlaeekgiepvivlnKiDlleeeeeleelkeel 72 
                  L l+++++ + v  ++K Dll+ +e+l+++ ++ 
   CCG92913.1 468 LKLVKKNNGQSVFTISKEDLLHPDETLNNWIAAS 501
                  55678889999**************999987654 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.7e-05     0.035      18      49 ..      97     128 ..      75     134 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.7e-05
                 HTEEEEEEESTTSSHHHHHHHHHHHTT----- CS
        TsaE  18 lgdvilLeGdLGaGKTtlvrglakalgveevk 49 
                 +++ ilL G+ G+GKT lvr la  +gv  vk
  CCG92913.1  97 VKQNILLVGPSGVGKTYLVRCLADCIGVPMVK 128
                 3667*********************9997665 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00015      0.11       3      33 ..     101     131 ..      99     135 .. 0.83
   2 ?   -1.7   0.0       3.2   2.4e+03      90     158 ..     405     464 ..     391     469 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqga 33 
                 ++l G++G+GKT+L++ la+++  +  +++a
  CCG92913.1 101 ILLVGPSGVGKTYLVRCLADCIGVPMVKADA 131
                 799****************998877666655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.2
                 STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHHHH CS
       NACHT  90 lDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeqleeaivlevegfsesrrkql 158
                 +De++       k++ ++ +++ + +   +++ + ++ +++a + l++  +e   + v ++ +++ k +
  CCG92913.1 405 MDEAK-------KTKEKEEIEQFLHE-FYKSNEIRIIFQNEAIEALKQEAQER-GISVLDLCKEKFKNY 464
                 34443.......44445666666666.77778888888888888888877777.666666666666665 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00012     0.092      34      77 ..      99     142 ..      57     179 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaa 77 
                   +ll+Gp G+Gkt l + +a+ +gv +  + +   +++g + a
  CCG92913.1  99 QNILLVGPSGVGKTYLVRCLADCIGVPMVKADATKFSETGYVGA 142
                 579**********************9998877777766665444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00023      0.17       1      39 [.     100     139 ..     100     164 .. 0.78
   2 ?   -2.5   0.1       7.3   5.4e+03     132     153 ..     412     433 ..     402     455 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00023
      AAA_28   1 kivitGgestGKTtlleaLaar.gypvvpEaareileekl 39 
                 +i ++G+++ GKT l++ La+  g+p+v+  a+++ e ++
  CCG92913.1 100 NILLVGPSGVGKTYLVRCLADCiGVPMVKADATKFSETGY 139
                 589*****************98899999777777766655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.3
      AAA_28 132 eereaiderlrealrelgipvi 153
                 +e e+i++ l e+++   i++i
  CCG92913.1 412 KEKEEIEQFLHEFYKSNEIRII 433
                 5666777777777776666555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00038      0.28      12      33 ..      99     120 ..      96     217 .. 0.89
   2 ?   -0.8   0.0       2.7     2e+03      87      92 ..     419     424 ..     315     484 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00038
                 SEEEEEESTTSSHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  12 ekvaivGenGaGKStLlkllag 33 
                 + + +vG++G GK+ L+++la 
  CCG92913.1  99 QNILLVGPSGVGKTYLVRCLAD 120
                 6789***************985 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.7
                 HHHHHS CS
                 xxxxxx RF
    ABC_tran  87 kalskl 92 
                 ++l+++
  CCG92913.1 419 QFLHEF 424
                 222222 PP

>> ATP-synt_F  ATP synthase (F/14-kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.1   0.00041      0.31      22      51 ..     406     439 ..     372     450 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00041
                 E....CSSHHHHHHHHHHHHHHTTEEEEEEEHHH CS
  ATP-synt_F  22 e....vtdeeeieealkelleredigiiliteki 51 
                 +     +++eeie+ l+e++++++i ii+ +e+i
  CCG92913.1 406 DeakkTKEKEEIEQFLHEFYKSNEIRIIFQNEAI 439
                 055446679********************99987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00022      0.16       2      32 ..     101     131 ..     101     212 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00022
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdt 32 
                 +llvG++G+GK++l++ l+   g+  +  d+
  CCG92913.1 101 ILLVGPSGVGKTYLVRCLADCIGVPMVKADA 131
                 689*************999777777777776 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00029      0.21      33      52 ..      98     117 ..      93     138 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00029
       AAA_7  33 kkpvllvGptGtGKtviikd 52 
                 k+++llvGp+G+GKt +++ 
  CCG92913.1  98 KQNILLVGPSGVGKTYLVRC 117
                 789************99975 PP

>> FATC  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3     0.016        12       3      15 ..     143     155 ..     142     156 .. 0.94
   2 ?    3.9   0.0     0.062        46       5      16 ..     269     280 ..     267     283 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.016
        FATC   3 sveqQVdrLIkeA 15 
                 +ve+ V +LI++A
  CCG92913.1 143 DVEDLVRELIQQA 155
                 69**********9 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.062
        FATC   5 eqQVdrLIkeAT 16 
                 e  V +LI+eAT
  CCG92913.1 269 EKVVADLISEAT 280
                 66799******9 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         6   4.5e+03      95     108 ..      48      61 ..      26      87 .. 0.49
   2 ?    4.8   0.0     0.035        26      22      44 ..      97     119 ..      93     123 .. 0.86
   3 ?    5.1   1.7     0.029        22     138     208 ..     390     456 ..     303     473 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6
       DUF87  95 wsldpeelldllee 108
                  +++p+e+ + l+ 
  CCG92913.1  48 FQFTPKEIKSYLDR 61 
                 23333333333333 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.035
       DUF87  22 vtrHlAilgsTGsGKSntvavLl 44 
                 v++ ++ +g +G+GK+++v+ L 
  CCG92913.1  97 VKQNILLVGPSGVGKTYLVRCLA 119
                 77788999***********9986 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.029
       DUF87 138 ssdepveklleelkkekeelrklknqaiarlldkledllrkggsfsnsstdliallleklekegkitiidl 208
                 ++++p ek+l+ lk   e  + +k++ ++++++ l ++ ++++ ++ ++++ i+ l +++ +e+ i+++dl
  CCG92913.1 390 TVEDPEEKVLKILK---EMDEAKKTKEKEEIEQFLHEFYKSNEIRIIFQNEAIEAL-KQEAQERGISVLDL 456
                 56777777777777...666667777777888888888888887777788888888.78888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1511  (0.0842769); expected 358.6 (0.02)
Passed bias filter:                      944  (0.0526521); expected 358.6 (0.02)
Passed Vit filter:                       150  (0.00836633); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 3279.11
//
Query:       CCG92914.1  [L=309]
Description: Nucleoside-diphosphate-sugar epimerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-41  141.7   0.0      3e-41  141.5   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.8e-27   96.6   0.0    2.8e-27   96.0   0.0    1.3  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.2e-13   50.7   0.0    1.7e-13   50.3   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    2.6e-09   36.6   0.0    5.4e-09   35.5   0.0    1.5  1  RmlD_sub_bind    RmlD substrate binding domain
      6e-09   35.4   0.0    3.4e-05   23.1   0.0    2.5  2  NAD_binding_4    Male sterility protein
      4e-07   29.5   0.0    6.1e-06   25.6   0.0    2.4  1  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.5   0.0     1e-44     3e-41       1     226 [.       5     226 ..       5     238 .. 0.88

  Alignments for each domain:
  == domain 1  score: 141.5 bits;  conditional E-value: 1e-44
                 EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHCEEEE--TT-HH....HHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledlelveldltdrs....alerlfkeeqpdavihlAavggvaassedpadfieknlq 93 
                 ilVtG++GfiGs+lv++++++    ++i++d  ss+s ++ l      ++d+  ++    ++e++f+++++  v+hl   +  ++++ d  + +++n++
  CCG92914.1   5 ILVTGGAGFIGSNLVHEIQRRFpkSDLIVIDDFSSGSFKNMLSS----HCDVITEDlygfQWENYFSKNEIPLVFHL--ASLTDTTVVDERRQMQNNVE 97 
                 8*******************988678*******88887777665....5555555555668****************..56777788888899****** PP

                 HHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH.T-EEEEEEESEEESTT.S-TTSTTSHHHHHH CS
   Epimerase  94 gtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy.glnaiilrlfnlyGpr.ngegevsrvipali 190
                   ++ll   + +   r++++sS++vYG      +++    ++ +p +pY+ +Kl +e+l+ ay +++ + +++ lr+fn+yGpr +++g+ s++i +++
  CCG92914.1  98 AFRKLLRFFSGTST-RIIYASSAAVYGIASG--RNSI--HDQPHPANPYGFSKLQMEHLAAAYSKENpQARITGLRYFNVYGPReTHKGKASSMILQIA 191
                 **********9999.************8888..3333..35779****************************************999999********* PP

                 HHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHH CS
   Epimerase 191 rkilegkqevtllgdgtalRdflyveDvaeaillvl 226
                 ++i+egk    l++ g+++Rdf+yv Dv++a +l +
  CCG92914.1 192 KQIKEGK-APRLFSFGEQKRDFVYVADVVNATILTA 226
                 *******.***********************88755 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   9.3e-31   2.8e-27       1     274 [.       6     255 ..       6     302 .. 0.73

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 9.3e-31
                    EEETTTSHHHHHHHHHHHHCT-CCEEE.EEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgi.vrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekP 95 
                    L+TG+aGfiGs+l++ + ++  +   i +++ s    g+ +++ +       ++  ++  Dl    + e+ +++ ++  v++LA     d+ + + 
     CCG92914.1   6 LVTGGAGFIGSNLVHEIQRRFPKSDLIvIDDFS---SGSFKNMLS-------SHCDVITEDLYG-FQWENYFSKNEIPLVFHLASLT--DTTVVDE 88 
                    9****************9995544433033334...455555553.......346799****98.569****************665..6666667 PP

                    HHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---.EEEEEE-EEESTTS-T CS
  GDP_Man_Dehyd  96 eytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglf.avngilfnhesprrge 190
                     + +++nv +  +LL         +++r++ aS++ vYG ++    + + + +P +PY+ +Kl  ++++ +y ++     ++  ++fn ++pr ++
     CCG92914.1  89 RRQMQNNVEAFRKLLRFFSG----TSTRIIYASSAAVYGIAS-GRNSIHDQPHPANPYGFSKLQMEHLAAAYSKENPQArITGLRYFNVYGPRETH 179
                    89**************9965....469************997.4555666789*******************9987765155579********998 PP

                    TS.CCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH. CS
  GDP_Man_Dehyd 191 tf.vtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktieweg 274
                    +      i +++ +i++gk + l +  +++kRd+ +v D+v+a  l   +d p         + +v++ + ++f e+ + +  + 
     CCG92914.1 180 KGkASSMILQIAKQIKEGKAPRL-FSFGEQKRDFVYVADVVNATILTAIKDCP-------VAVLNVGSGCAKSFNEVIQIL-NQI 255
                    85156688999999*****9998.566789**************998888887.......345666777777777765433.222 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   5.6e-17   1.7e-13       1     229 [.       6     226 ..       6     229 .. 0.77

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 5.6e-17
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdklee.alegvdvvihlaslvdvagkltedeimkvnvkGTrn 98 
                 +vtGgaGF+G++lv+e+ r+ ++ ++ v+D   s +  +++ +++ + vi+ D+   +  +    +++ +v+hlasl+d + ++++   m+ nv+  r+
  CCG92914.1   6 LVTGGAGFIGSNLVHEIQRRFPKSDLIVIDDFSSGSF-KNMLSSHCD-VITEDLYGFQWENYfSKNEIPLVFHLASLTDTTVVDERR-QMQNNVEAFRK 101
                 69****************************7777777.455556666.8999*9998865442568999**********99966555.8999******* PP

   3Beta_HSD  99 vleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkl......lvp 191
                 +l     ++ ++++Y Ssa v g          g  + + ++ + ++y  sK + E+l  +      +n++  +   LR   +yG++++       +  
  CCG92914.1 102 LLRFFSGTS-TRIIYASSAAVYGI-------ASGRNSIHDQPHPANPYGFSKLQMEHLAAAYSK---ENPQARI-TGLRYFNVYGPRETHkgkassMIL 188
                 **9876666.679******98887.......55666667889999************9776666...7887444.47*********9975222111233 PP

   3Beta_HSD 192 llkqlaklglalfkigdeevlsdrvYvgNvawahilAa 229
                 ++ + +k g+a       e++ d+vYv  v+ a il a
  CCG92914.1 189 QIAKQIKEGKAPRLFSFGEQKRDFVYVADVVNATILTA 226
                 3444455565433344445566*************976 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   1.8e-12   5.4e-09       2     154 ..       4     175 ..       3     198 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 1.8e-12
                    EEEEESTTSHHHHHHHHHCTT..TSEEEEEE-TT...........T--TTSHH....HHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlae..eglevlaltre...........eldltdae....avaellkeakpdvvvnaAAytavDkaEseeeaayavnae 80 
                    kilvtG+ G +Gs+L++++++   + +++ ++             ++d+  ++    + ++ +++++  +v ++A  t+   + +  +++++ n+e
     CCG92914.1   4 KILVTGGAGFIGSNLVHEIQRrfPKSDLIVIDDFssgsfknmlssHCDVITEDlygfQWENYFSKNEIPLVFHLASLTDTTVVDE--RRQMQNNVE 97 
                    79**************99998443556666644356999999999666655442333678999999999*********9888765..56778899* PP

                    HHHHHHHHHHHCT-EEEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHH...H-SSEEE..EEE-SEESS CS
  RmlD_sub_bind  81 avealAeaaaavgalLihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavla...agkkali..vRtswvyge 154
                    a ++l +  + +   +i+ S+  V+  +     + +d+++P n YG +Kl++E+  +a   ++++a i  +R   vyg 
     CCG92914.1  98 AFRKLLRFFSGTSTRIIYASSAAVYGIAS-GRNSIHDQPHPANPYGFSKLQMEHLAAAyskENPQARItgLRYFNVYGP 175
                    *************************7665.55899******************99888433444444433666777765 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00015      0.45       1      23 [.       7      29 ..       7      34 .. 0.85
   2 !   23.1   0.0   1.1e-08   3.4e-05      86     256 ..      69     221 ..      51     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00015
                   EE-TTSHHHHHHHHHHHHHS-.T CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpev 23
                   +TG+ GF+G+ L++++ r+ p+ 
     CCG92914.1  7 VTGGAGFIGSNLVHEIQRRFPKS 29
                   7***************9998875 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 1.1e-08
                    HH--EEEE--SS-S.ST.TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHH CS
  NAD_binding_4  86 eevdviihsaAtvnfde.pykellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsK 180
                    +e+ +++h a  ++ +  + ++ ++ Nve+ r++l++ ++++    +++ S+a+v+g  +g+                  +  ++   +n Y +sK
     CCG92914.1  69 NEIPLVFHLASLTDTTVvDERRQMQNNVEAFRKLLRFFSGTSTR--IIYASSAAVYGIASGR-----------------NSIHDQPHPANPYGFSK 145
                    78999*******9976658899*****************77666..*************986.................4667778889******* PP

                    HHHHHHHHHHHHHH---..EEEEEE-EEE--SSST---TTSHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHHHH CS
  NAD_binding_4 181 alaEklvrearrrsglp..vvivRpsiitgesktGwingsdlgirgllgliakgvlpeilgdkeavldlvpvDyvana 256
                       E+l  +++++ + +  ++ +R  +++g  +t   + s+ +i  +   i++g+ p+++   e++ d+v v  v+na
     CCG92914.1 146 LQMEHLAAAYSKE-NPQarITGLRYFNVYGPRETHKGKASS-MILQIAKQIKEGKAPRLFSFGEQKRDFVYVADVVNA 221
                    ***********77.5441156689999***88888888888.99999999********99999999999999888887 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.1e-09   6.1e-06       1     189 [.       5     197 ..       5     202 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.1e-09
                      EEEETTTSHHHHHHHHHHHHHB-SE.EEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkk.iillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlv 93 
                      +lvtG++G iGs+lv++i ++ pk+ +i+++  +++  ++++ l+++          + vi++     + e+ +++ ++ +vfh A l    +v
       CCG92914.1   5 ILVTGGAGFIGSNLVHEIQRRFPKSdLIVID--DFSSGSFKNMLSSH----------CDVITEDLYGFQWENYFSKNEIPLVFHLASLTDTTVV 86 
                      89*****************996654155554..45555555555211..........12444445566789999****************9999 PP

                      HH.....SHHHHHHHHH...HHHHHHHHHHHHTT-SEEEE..EEEGGGSS--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTGT.. CS
  Polysacc_synt_2  94 ee.....npleaiktNv...lgtenvieaaieagvkkvvl..iStDKAvnPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlgSr.. 175
                      +e     n +ea++       gt++ i  a +a v  +     S     +P n +G +K+ +e l+ a++ke+   + +++  R+ NV g r  
       CCG92914.1  87 DErrqmqNNVEAFRKLLrffSGTSTRIIYASSAAVYGIASgrNSIHDQPHPANPYGFSKLQMEHLAAAYSKEN--PQARITGLRYFNVYGPRet 178
                      86222224444444322221466666666666666655432246666678********************999..7899*********986522 PP

                      ..T...SSHHHHHHHHHTT CS
  Polysacc_synt_2 176 ..G...SviplFkkqikeg 189
                        G   S+i    kqikeg
       CCG92914.1 179 hkGkasSMILQIAKQIKEG 197
                      2323336777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2161.45
//
Query:       CCG92915.1  [L=242]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-60  204.4   0.3    1.7e-60  204.2   0.3    1.0  1  Methyltrans_RNA  RNA methyltransferase
  ------ inclusion threshold ------
      0.045   13.6   0.1      0.095   12.5   0.1    1.5  1  NinB             NinB protein


Domain annotation for each model (and alignments):
>> Methyltrans_RNA  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.2   0.3   1.9e-64   1.7e-60       4     226 .]      15     238 ..      13     238 .. 0.92

  Alignments for each domain:
  == domain 1  score: 204.2 bits;  conditional E-value: 1.9e-64
                      EHHHHHHHHTTTT--TT-EEEEEESSSEEEEEEEEEEESSEEEEEEEEEEE---SSSSE.EEEEEE--SSHHHHHHHHHHHHTT-SEEEEEE-T CS
  Methyltrans_RNA   4 tdeeahHlvkVlRlkegdeiklfdgdgkeyeaeieeiskkkvtvkilekeeenkespek.itlaqalpkgdklelilqkatElGvseivplise 96 
                      + +e+hH+++V R k gd i++fdg+g+ +ea+i++i++kkv +++l++++    ++ + ++l+q+++k++ + ++lqk+tE+Gv++i+p+ se
       CCG92915.1  15 DVAESHHCIHVKRHKIGDVIEVFDGNGGSWEAQIKKIENKKVFLTLLRERPPLFVPKGPrLILIQSILKNKAMQFLLQKVTEVGVDQIIPTVSE 108
                      55899*****************************************97776655544445********************************** PP

                      TSSS...HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEEEEEHHHHHHHCSCCEEEEEEETTSSEBGGGSSHCCHTHHCS...EEEEEE--TT- CS
  Methyltrans_RNA  97 rsvvkldekkkdkklerwqkilieAaeQsgrtrlpevkepislkelleelkeadlklildeeekksleelsekkkelkev...kvlliiGPEGG 187
                      r+ + ++e++k+ k ++w+ il +A++Qs++  lpe++ + +++++l++  +++lkl+++ +   ++++l+e  k++++    +v++++GPEG 
       CCG92915.1 109 RT-QFSKEERKQAKERKWKDILLAAVKQSHQKKLPELSAMTTFTDVLKKEFSFSLKLMAYLGP--EAKPLKEILKSHAQEklsSVIILVGPEGD 199
                      **.8899*******************************************************5..555555555555555569*********** PP

                      --HHHHHHHHHTTCEEEB-SSS---HHHHHHHHHHHHHH CS
  Methyltrans_RNA 188 fsekEiellkeagfkpvsLgpriLRteTAalaalsalqa 226
                      f+ekE + + ++gf+p++Lg++iLR+eTAal++ls+l++
       CCG92915.1 200 FTEKEKASALSHGFIPINLGNQILRSETAALFLLSILNY 238
                      ************************************986 PP

>> NinB  NinB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.1e-05     0.095      54      91 ..     105     142 ..      99     161 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.1e-05
        NinB  54 diarqvewagekl...daeeWKdlltaalkqatgeeqevvp 91 
                 ++++ +++  e +   ++ +WKd+l aa+kq   ++q+ +p
  CCG92915.1 105 TVSERTQFSKEERkqaKERKWKDILLAAVKQ---SHQKKLP 142
                 68899999554441114578***********...4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1729.25
//
Query:       CCG92916.1  [L=346]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.028   13.7   0.0      0.052   12.8   0.0    1.4  1  SPATA9    Spermatogenesis-associated protein 9


Domain annotation for each model (and alignments):
>> SPATA9  Spermatogenesis-associated protein 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.9e-06     0.052      80     163 ..      97     180 ..      74     191 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.9e-06
      SPATA9  80 ssisrssksvakllrprlarlllelraisrkllrevelkkkallklqvrksslfeiisfpaktaltsilyasyaaliylavcvn 163
                 ++ +++++++ +++ p +  +l+e   + +k l  ++ +   l +l++r+ +++ei+s+    +  s  +a y  + +  + vn
  CCG92916.1  97 NRKFKDQRILRDFIGPDVIVTLIEAEWVIKKELESIDSPDPFLKALKARQHTIYEILSWMNEEVSLSEDWARYMNIPHYVISVN 180
                 5556789999*****************************************************999999999999988888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2453.77
//
Query:       CCG92917.1  [L=214]
Description: Deoxyribose-phosphate aldolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-13   49.7   0.1    4.8e-13   49.3   0.1    1.1  1  DeoC      DeoC/LacD family aldolase
     0.0019   17.5   0.2     0.0054   16.0   0.1    1.7  2  DHO_dh    Dihydroorotate dehydrogenase


Domain annotation for each model (and alignments):
>> DeoC  DeoC/LacD family aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.1   5.4e-17   4.8e-13      19     217 ..      14     198 ..       6     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 5.4e-17
                 TSSHHHHHHHHHHHHHHGGGSSEEEEETTTHHHHHHCSCT...TSEEEEETECSSCCTTSTTEEEETTCHHHHHHHTT-SEEEEEEEEHTTTTCHHHHH CS
        DeoC  19 aqneqledlkalvkealtpgasavlldpgviasaskeyak...diallvkldkgtyllkskqrdvdevasveeakalGAdavkvvvyyradgseeeqqk 114
                  ++++  ++ +l+++a++ g  av+++p  +  a+  +++   ++a++++++ g   l  k       +++ ea+++GA+++++v+++ a   +++   
  CCG92917.1  14 RPDALDHEIIQLCTDAKKYGFQAVCVQPCWVSLAAELLQEssiKTATVIGFPFGANKLAVK------CIEASEAVKDGANELDLVIPLWAVHLKQWHII 106
                 455667899*******************************************666666666......******************************** PP

                 HHHHHHHHHHHHHHTEEEEEE.EEE-CTTBSSTTCHHHHHHHHHHHHTCCT-SEEEE--SSCC.B.HHHHHHHHHHHHHCHSSTEEEEETTSSHHHHHH CS
        DeoC 115 laeikrvkeacheeglplile.lylrdeaikdekvdpdlvaeAarvsaelGaDiiKvevpkevvnateedaevfkdvikaapvpgvvlsGGvseedfle 212
                  +e+k+v   ++e   + i+e +    ++          +++Aa +++e Ga++iK++++      + ed+++ k    ++ +  ++ sGG+  + f+ 
  CCG92917.1 107 ENEVKAVCNIAGEKLVKAIIEvGCFHRSE----------IEQAALAAIEGGAKFIKTSTGYGPRGVEIEDIRFLKSFLPSS-IG-IKASGGIRSKSFAI 193
                 *********************55555555..........9********************333444445555555544433.33.99999998888876 PP

                 HHHHH CS
        DeoC 213 tvedA 217
                  + +A
  CCG92917.1 194 ELIKA 198
                 66655 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.42   3.8e+03     172     201 ..      16      45 ..      13      63 .. 0.46
   2 !   16.0   0.1     6e-07    0.0054     229     271 ..     162     204 ..     152     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.42
                 SSSHHHHHHHHHHHHHHTECEEEE...BSE CS
      DHO_dh 172 dltdeekkdiadvllelkldgiivtNttvq 201
                 d  d e+++    +++ +++++ v+   v+
  CCG92917.1  16 DALDHEIIQLCTDAKKYGFQAVCVQPCWVS 45 
                 555555555555555555555544433333 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 6e-07
                 HHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEE CS
      DHO_dh 229 ialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvq 271
                 + ++ ir l++ l ++i i ++GGi s   a+e i+aGA+ + 
  CCG92917.1 162 VEIEDIRFLKSFLPSSIGIKASGGIRSKSFAIELIKAGATRIG 204
                 5678899999999**************************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1585.73
//
Query:       CCG92918.1  [L=60]
Description: hypothetical protein MFUM_850006 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 426.67
//
Query:       CCG92919.1  [L=68]
Description: hypothetical protein MFUM_850007 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       159  (0.00886831); expected 358.6 (0.02)
Passed bias filter:                      150  (0.00836633); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 582.31
//
Query:       CCG92920.1  [L=150]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-17   62.7   0.0    5.4e-17   62.7   0.0    1.0  1  Host_attach     Protein required for attachment to host cells
    2.4e-08   34.6   0.0    2.8e-08   34.4   0.0    1.1  1  baeRF_family12  Bacterial archaeo-eukaryotic release factor f


Domain annotation for each model (and alignments):
>> Host_attach  Protein required for attachment to host cells
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0     6e-21   5.4e-17      21     137 ..      29     146 ..       5     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 6e-21
  Host_attach  21 pltlveelehpesrlkerelgsdrpgrsne.saggggrsavdeetdpkeee.eerfarevadrLekaraagkferlvlvApPrflGlLrealskelkk 116
                  + +l+++   +++r++ +++++d++g++   s   +g+ +v +e+++++ e +++ + e+a+ +++++++++  ++ l A++ +l ++ e +++  kk
   CCG92920.1  29 HAQLIDDQILEMGRKRLKDIDTDKQGEFAVvSYPLTGERSV-GERHNEKLEiRRKLICEIAKIINQLIKKYNPMAWALSASSDILPRILERVDQTAKK 125
                  345699999999****************9999999******.8999999998********************************************** PP

  Host_attach 117 lvvkevdkdltklpadeleeh 137
                  ++vk+++ dltk +++e+ e+
   CCG92920.1 126 NLVKTIPADLTKIDKAEILER 146
                  ******************886 PP

>> baeRF_family12  Bacterial archaeo-eukaryotic release factor family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.2e-12   2.8e-08      26     137 ..      31     146 ..      17     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3.2e-12
  baeRF_family12  26 elveefkreqdrpsdregssdrpGrsssggag...rsam.eetdfkeqeeerFakeladeLkkrakegkferlvlvappetlgelrkhlhkevkk 116
                     +l++++  e +r   +++ +d++G+++ ++     + ++ e++++k + + ++  e+a+ +++ +k+ +     l a  ++l ++ +  ++++kk
      CCG92920.1  31 QLIDDQILEMGRKRLKDIDTDKQGEFAVVSYPltgERSVgERHNEKLEIRRKLICEIAKIINQLIKKYNPMAWALSASSDILPRILERVDQTAKK 125
                     566678889999999**********777777766556662455555558999******************************************* PP

  baeRF_family12 117 rlvgeiaknltkhppaeiler 137
                      lv++i+ +ltk + aeiler
      CCG92920.1 126 NLVKTIPADLTKIDKAEILER 146
                     *******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1126.58
//
Query:       CCG92921.1  [L=416]
Description: SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-16   60.7   0.0    2.1e-16   60.1   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    3.3e-16   59.9   0.0    6.9e-16   58.8   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
    3.1e-14   53.4   0.0    6.1e-14   52.5   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    1.4e-12   48.1   0.0    3.3e-12   46.9   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    1.1e-11   44.8   0.0    1.9e-11   44.1   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    5.7e-08   32.5   0.0    0.00091   18.8   0.0    2.3  2  CheR             CheR methyltransferase, SAM binding domain
    7.5e-06   25.5   0.0    1.3e-05   24.7   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
    3.3e-05   23.5   0.0    5.6e-05   22.7   0.0    1.3  1  MTS              Methyltransferase small domain
    5.4e-05   22.9   0.0    8.5e-05   22.3   0.0    1.2  1  TPMT             Thiopurine S-methyltransferase (TPMT)
    0.00059   19.2   0.0    0.00093   18.6   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0026   17.1   0.0     0.0066   15.8   0.0    1.6  1  Methyltransf_2   O-methyltransferase domain
     0.0088   15.8   0.0      0.016   14.9   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
  ------ inclusion threshold ------
      0.057   12.4   0.0      0.086   11.8   0.0    1.1  1  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   1.5e-19   2.1e-16      10     109 ..      71     170 ..      58     204 .. 0.92

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 1.5e-19
  Methyltransf_31  10 lGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsnevlnaladpdkileeiervl 101
                      +GCGtG+ +f++a +++p+ +vv +Dis++aie A +  +  g++nv+F q+d  +   ++ l  + fD i ++evl  ++dp+++l  + + l
       CCG92921.1  71 AGCGTGNEAFNIA-RAFPNLTVVAFDISQRAIETAIKWQKASGIQNVHFVQEDLMNpNLSHsLG-SDFDWISCHEVLSFVYDPQAALHHLASCL 162
                      8************.****************************************9964445455.89*************************** PP

  Methyltransf_31 102 kpggilli 109
                      +p+g + i
       CCG92921.1 163 SPDGCIYI 170
                      ****8876 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0     5e-19   6.9e-16       3      99 .]      71     168 ..      69     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 5e-19
  Methyltransf_12   3 iGcGtGsllralleklpdieytgvDispsai..edakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                       GcGtG+ ++ +++++p++++++ Dis++ai  + + +k + ++n ++ + +l + +l+ + g s fD + +++vl+ + d++++l++++++L+
       CCG92921.1  71 AGCGTGNEAFNIARAFPNLTVVAFDISQRAIetAIKWQKASGIQNVHFVQEDLMNPNLSHSLG-SDFDWISCHEVLSFVYDPQAALHHLASCLS 163
                      7******************************55555566667777777777777777654444.7***************************** PP

  Methyltransf_12  95 pgGrl 99 
                      p+G++
       CCG92921.1 164 PDGCI 168
                      ***86 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   4.4e-17   6.1e-14       2      97 .]      69     166 ..      68     166 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 4.4e-17
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCG..BSS.STTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaed..lpf.edgsfDlvvssgalhhlsdedlekalkeiar 91 
                      L +GcGtG+ ++++a+++++ +v+++Dis++++e+a +  +++g+ nv+fvq d+ +  l+    + fD + +  +l+++ d+  ++al+++a+
       CCG92921.1  69 LVAGCGTGNEAFNIARAFPNLTVVAFDISQRAIETAIKWQKASGIqNVHFVQEDLMNpnLSHsLGSDFDWISCHEVLSFVYDP--QAALHHLAS 160
                      668***************99***********************************874455425569******7779998855..599****** PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      +L p+G
       CCG92921.1 161 CLSPDG 166
                      ****99 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   2.4e-15   3.3e-12       2      96 .]      70     170 ..      69     170 .. 0.89

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 2.4e-15
                      EET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT...-EEEEEEES-CCC-CCHHHHHHHHHHHEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl.kvefvvadaeklpfedn...sfDlvvssevlhhvedpekalkeiaRvLk 89 
                       +GcGtG  a  +a+++   +vv++D+s++++++a + ++ +g+ +v fv++d+ + ++  +    fD + ++evl +v dp++al  +a +L 
       CCG92921.1  70 VAGCGTGNEAFNIARAFpnLTVVAFDISQRAIETAIKWQKASGIqNVHFVQEDLMNPNLSHSlgsDFDWISCHEVLSFVYDPQAALHHLASCLS 163
                      68************9999*****************88888888889*********85555433339**************************** PP

                      EEEEEEE CS
  Methyltransf_11  90 pgGllvi 96 
                      p+G ++i
       CCG92921.1 164 PDGCIYI 170
                      ***9875 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   1.4e-14   1.9e-11      26     124 ..      68     177 ..      53     260 .. 0.72

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 1.4e-14
  Methyltransf_23  26 vLdiGcGtGillevlrengf..svtgvDlspeaveiae......kakkaqkdqfdeqeaaepqg......kfdlIvlrevlehvpdppellrqi 105
                       L  GcGtG+ +  +++ +   +v+++D+s +a+e a       ++++ +++q+   +  +p+        fd I++ evl  v dp ++l+++
       CCG92921.1  68 FLVAGCGTGNEAFNIARAFPnlTVVAFDISQRAIETAIkwqkasGIQNVHFVQE---DLMNPNLshslgsDFDWISCHEVLSFVYDPQAALHHL 158
                      5668*****76666655544479**********999889996665555555555...4444444555777************************ PP

  Methyltransf_23 106 atllkpgGylllseplasl 124
                      a++l+p+G +++ + +  +
       CCG92921.1 159 ASCLSPDGCIYIGVKGTFH 177
                      **********998866655 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00011      0.15      34      80 ..      67     104 ..      45     112 .. 0.88
   2 !   18.8   0.0   6.6e-07   0.00091     118     177 ..     114     174 ..     106     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
                 EEEEES-TTTHHHHHHHHHHHCHSTTTSSS-EEEEEEESSCHHHHHH CS
        CheR  34 riwsagcssGeEpYslAmllketlpkaaklkvkilAtDidlkvlekA 80 
                 +++ agc++G+E++ +A ++ +         + ++A Di+++++e+A
  CCG92921.1  67 KFLVAGCGTGNEAFNIARAFPN---------LTVVAFDISQRAIETA 104
                 6788************987776.........679999***9999998 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 6.6e-07
                 TTEEEEE--TTT...-SGGG--EEEEEE-SSGGGC-CHHHHHHHHHHHCCEEEEEEEEE-TTB CS
        CheR 118 elvkFeklnlle...kksvlgklDvifcrnvliYfdeetqekvlerfaeklkpgglLllGhsE 177
                 ++v+F + +l++   ++s+ +++D i c +vl++   ++  + l+++a+ l+p+g +++G   
  CCG92921.1 114 QNVHFVQEDLMNpnlSHSLGSDFDWISCHEVLSFVYDPQ--AALHHLASCLSPDGCIYIGVKG 174
                 689999****9988888999**************98775..679****************865 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   9.5e-09   1.3e-05       8      62 ..      71     125 ..      65     136 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.5e-09
                     ET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCC CS
  Methyltransf_4   8 iGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalk 62 
                      GcG G+   ++A ++P+ ++++ +i+++ +++++k  +a++++N++ ++ d ++
      CCG92921.1  71 AGCGTGNEAFNIARAFPNLTVVAFDISQRAIETAIKWQKASGIQNVHFVQEDLMN 125
                     59************************************************99875 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   4.1e-08   5.6e-05      33      92 ..      66     126 ..      60     140 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.1e-08
                 SEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTT CS
         MTS  33 gkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvlee 92 
                 gk l  GcG+G  + ++a++ p+++v+++d++ rA+e a +  +a++++ v++v++d+++ 
  CCG92921.1  66 GKFLVAGCGTGNEAFNIARAFPNLTVVAFDISQRAIETAIKWQKASGIQnVHFVQEDLMNP 126
                 566667*******************************************9*******9875 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   6.2e-08   8.5e-05      38     123 ..      65     151 ..      60     160 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 6.2e-08
                 -EEEEEET-TT-HHHHHH-B..TTEEEEEE-S-HHHHHHHHHHHTTSGGGGGEEEE--............-TTT---.SS-..EEEEEEE CS
        TPMT  38 glrvlvPlCGkaldlvwlAe..qgrevvGvelselAvekffeeanlepkvkelsgvke.ysageiellcgdvFtlra.eelgkfdliydr 123
                 +++ lv +CG + ++  +A   ++ +vv+ ++s+ A+e + + ++    ++++++v+e    ++++   g+ F++   +e+  + ++yd 
  CCG92921.1  65 KGKFLVAGCGTGNEAFNIARafPNLTVVAFDISQRAIETAIKWQKA-SGIQNVHFVQEdLMNPNLSHSLGSDFDWIScHEV--LSFVYDP 151
                 5699***********988764489***************9887776.789999999999999************9651556..8999994 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.8e-07   0.00093      50     151 ..      67     170 ..      50     186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.8e-07
                      EEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-...T-EEEEEEES-GGG-S-HHHHHHHHH CS
  Ubie_methyltran  50 kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfed...dsfDvvtvsfGlrnvtDklkaLkeay 140
                      k+l   +Gtg+ af+++++   + +vv  Di++  ++++ k  k +g +n++f+q + ++ + +      fD +     l  v D + aL+++ 
       CCG92921.1  67 KFLVAGCGTGNEAFNIARAF-PNLTVVAFDISQRAIETAIKWQKASGIQNVHFVQEDLMNPNLSHslgSDFDWISCHEVLSFVYDPQAALHHLA 159
                      788889**********9976.6789*******************************99875554433456999999999999999999999999 PP

                      HHEEEEEEEEE CS
  Ubie_methyltran 141 rvlkpGGrlvv 151
                        l p G +++
       CCG92921.1 160 SCLSPDGCIYI 170
                      99999998875 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.8e-06    0.0066      70     123 ..      72     126 ..      62     154 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.8e-06
                     T-TTSHHHHHHHHH-TT-EEEEEE-HH.HHHHHHHHS-----TTEEEEES-TTTS CS
  Methyltransf_2  70 GGGtGalakaivsayPtikvivfDlpe.VveaAkehlsageeervefvgGdffkd 123
                     G GtG  a +i++a+P+++v+ fD+++  +e+A +  +a+  ++v+fv+ d+++ 
      CCG92921.1  72 GCGTGNEAFNIARAFPNLTVVAFDISQrAIETAIKWQKASGIQNVHFVQEDLMNP 126
                     89***********************963789999998999999*****9999865 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.2e-05     0.016      26      79 ..      66     118 ..      60     132 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
      DUF938  26 tervLEiasGtGqHAvffApalpnlkwqpsdqdeelresiaawadelalsnlkp 79 
                 + + L  + GtG+ A  +A a+pnl+  + d  ++  e+  +w+++ +++n+++
  CCG92921.1  66 G-KFLVAGCGTGNEAFNIARAFPNLTVVAFDISQRAIETAIKWQKASGIQNVHF 118
                 4.478889*******************************************976 PP

>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.2e-05     0.086     204     255 ..      67     120 ..      63     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.2e-05
  tRNA_U5-meth_tr 204 dllelycGnGnfslalarnfe..kvlateiakssveaaqyniaankidnvqiir 255
                       +l   cG Gn ++ +ar f    v+a +i++ ++e+a +  +a  i+nv++++
       CCG92921.1  67 KFLVAGCGTGNEAFNIARAFPnlTVVAFDISQRAIETAIKWQKASGIQNVHFVQ 120
                      566667*****999999999622699*************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2774.38
//
Query:       CCG92922.1  [L=126]
Description: exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-08   34.7   2.5    1.5e-08   34.5   2.5    1.1  1  SBF       Sodium Bile acid symporter family
    0.00011   21.6   2.9    0.00013   21.4   2.9    1.0  1  SBF_like  SBF-like CPA transporter family (DUF4137)
  ------ inclusion threshold ------
        1.9    8.8   5.3       0.96    9.7   0.8    2.0  2  DUF2304   Uncharacterized conserved protein (DUF2304)


Domain annotation for each model (and alignments):
>> SBF  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   2.5   2.5e-12   1.5e-08      65     162 ..       2      97 ..       1     120 [. 0.84

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 2.5e-12
         SBF  65 GlilvglapggamsnvwtylakGdlelsvvlvalstllailltPlllyllaksl....eqttlkvpieeivksvlivviiPliaGillryillkhkGre 159
                 Gl lv+++p++  s+vw++ a+ ++  s+ lv+++t+ ++l+ P ll  + +++         +v +++i +++l++ i+P++ G l+r +l       
  CCG92922.1   2 GLALVSAMPVAGFSTVWSQNAGENVIFSLLLVLFTTFPSPLFSPCLLHWMEEMIsgsnALDLHTVIAKRIGIFLLLFAILPTVGGSLCRCVLKD----- 95 
                 999******************************************9999999988653223346888999*******************99987..... PP

         SBF 160 wfe 162
                  ++
  CCG92922.1  96 -LK 97 
                 .33 PP

>> SBF_like  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   2.9   2.1e-08   0.00013      95     207 ..       1     116 [.       1     125 [. 0.80

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.1e-08
    SBF_like  95 iGllllaalPtTvssnvvmtsqAgGnealalceavignllGvfltPalvqlll...sgs....svsvdyaevlkklllsvllPlvvGqvlqkifpklvk 186
                 +Gl l++a+P +   + v  ++Ag n++ +l+ +++  +  ++ +P l++++    sgs      +v ++++   lll ++lP v G +++ ++++l  
  CCG92922.1   1 MGLALVSAMPVA-GFSTVWSQNAGENVIFSLLLVLFTTFPSPLFSPCLLHWMEemiSGSnaldLHTVIAKRIGIFLLLFAILPTVGGSLCRCVLKDL-- 96 
                 699999999987.6677899******************************9975553333333223335555556999999**************99.. PP

    SBF_like 187 rlkkllkkvdslvlllivyts 207
                    +++  ++++ lll+ y  
  CCG92922.1  97 -KLNTIHYIENTFLLLLCYAN 116
                 .45679999999999999975 PP

>> DUF2304  Uncharacterized conserved protein (DUF2304)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.4     0.068     4e+02      35      51 ..      26      42 ..      24      46 .. 0.80
   2 ?    9.7   0.8   0.00016      0.96      32      83 ..      66     117 ..      42     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.068
     DUF2304 35 lllalilivlslfpqil 51
                ++++l+l+++  fp+ l
  CCG92922.1 26 VIFSLLLVLFTTFPSPL 42
                57889999999999765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00016
     DUF2304  32 llwlllalilivlslfpqiltvlanllGvgrgtnllfllgivfllvilfsls 83 
                 ++   ++++l+++++ p +  +l +++    ++n + ++   fll++++ +s
  CCG92922.1  66 VIAKRIGIFLLLFAILPTVGGSLCRCVLKDLKLNTIHYIENTFLLLLCYANS 117
                 55556899***************************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 879.19
//
Query:       CCG92923.1  [L=41]
Description: hypothetical protein MFUM_870002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 336.67
//
Query:       CCG92924.1  [L=401]
Description: Phosphoheptose isomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-27   96.7   0.3    5.9e-20   71.7   0.1    2.2  2  SIS_2     SIS domain
    9.9e-08   31.9   0.0    0.00013   21.8   0.0    3.4  3  SIS       SIS domain


Domain annotation for each model (and alignments):
>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   6.3e-09   5.6e-05      13      77 ..      28      92 ..      18     118 .. 0.82
   2 !   71.7   0.1   6.6e-24   5.9e-20      10     138 .]     221     349 ..     215     349 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 6.3e-09
                HHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST CS
       SIS_2 13 ivetqaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaragglaeferialpalalhtda 77
                + +++a +++   + ia+   ngg++l+fG G S+ +a+++a +++  + + + alpal  ++d 
  CCG92924.1 28 FFQKEALSLATICQQIASRFLNGGRILAFGRGSSQTDAQHVAVEFVHPVIVGKRALPALDISADF 92
                56778889999999********************************9999999999998877774 PP

  == domain 2  score: 71.7 bits;  conditional E-value: 6.6e-24
                 HHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST..THHHHHTT-TTHHHHHHHH..TT--TT-E CS
       SIS_2  10 lerivetqaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaragglaeferialpalalhtdaeatkssalerdegyakqilrl..vrlkpgDv 106
                   ++ve + e+i +aa+l+ +  ++g k+++fG+G+Sa +a ++a ++ ++    +  l+a  l+ +   +  sal++d g   +++r+  + l++gD+
  CCG92924.1 221 RLQVVEDEGEKILQAAKLLKEKSQQGAKIILFGNGGSATDANDFALDLLNISVEWPKPLTAYSLSMEP--AVISALANDVGAEVIFSRQlmAHLESGDI 317
                 56888**********************************************99999999999997765..677777777777777766644448***** PP

                 EEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2 107 LlviSnsGnnavvveaaeaakergmkviAlts 138
                  + iS+sG + +v+   e+a+++g+ +iA+++
  CCG92924.1 318 VVGISTSGGSRNVLTCFEEARKKGLSTIAILG 349
                 ******************************86 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0039        35       7      91 ..      52     140 ..      47     149 .. 0.73
   2 ?    1.5   0.0     0.027   2.5e+02       7      31 ..     248     272 ..     241     275 .. 0.87
   3 !   21.8   0.0   1.4e-08   0.00013      30      95 ..     291     356 ..     278     386 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0039
                 EEEEEESHHHH....HHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTT CS
         SIS   7 riyvlGaGtsy....aiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskg 91 
                 ri+ +G+G+s+    ++a e+ + +   +  + + + ++++ +  +a ++ +d+v+ +s  +    + +a+ la  rga ++a+ ++ g
  CCG92924.1  52 RILAFGRGSSQtdaqHVAVEFVHPVIVGKRALPALDISADFFNWLKAICRANDIVFGFSGIEGDVLVEKAIDLAMGRGALTLALPGKRG 140
                 88889999886222255555555555555556666677778888899999999999999888888888888899999988888766655 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.027
                 EEEEEESHHHHHHHHHHHHHHHHHH CS
         SIS   7 riyvlGaGtsyaiakelalkleeig 31 
                 +i+++G G s+  a+++al l  i+
  CCG92924.1 248 KIILFGNGGSATDANDFALDLLNIS 272
                 8*****************9998876 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 1.4e-08
                 HHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHH CS
         SIS  30 iggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgspla 95 
                 i+  + +v ++  +  + +a+++++d+v+ is+sg +++++   e+a+++g  +iaI + +g  ++
  CCG92924.1 291 ISALANDVGAEVIFSRQLMAHLESGDIVVGISTSGGSRNVLTCFEEARKKGLSTIAILGYDGGEIV 356
                 666778888899999999***************************************887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2976.55
//
Query:       CCG92925.1  [L=338]
Description: (NiFe) hydrogenase metallocenter assembly protein HypE [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-23   81.0   0.1    1.7e-22   80.2   0.1    1.3  1  AIRS_C    AIR synthase related protein, C-terminal domain
    1.3e-14   54.6   0.5    2.1e-14   53.9   0.5    1.3  1  AIRS      AIR synthase related protein, N-terminal domain


Domain annotation for each model (and alignments):
>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.1   1.9e-26   1.7e-22       1     152 [.     163     313 ..     163     316 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 1.9e-26
                 STTEEEEEEETSSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHHHH CS
      AIRS_C   1 kpGdvliltgslGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpifde 99 
                 ++Gd+++l g++G +g++++l+r+ +e e++       +d + ++  i+ + +l  +   +k ++D T+GGL++ l+e+a++ g+g+ i+++ +pi++e
  CCG92925.1 163 EVGDKILLSGPIGDHGITVLLARGEIELEATL-----QTDSRPLWPIIEPMIRLEPA--AIKWMRDPTRGGLASVLNELAHDIGFGIMIEEESIPIRQE 254
                 58****************************99.....9******************7..***************************************9 PP

                 HH.....HHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTC.CCEEEEEEEEESSSEE CS
      AIRS_C 100 le.....splemllsensGrllvavppeeadavlaileeegl.peaavIGevtakeels 152
                 ++     ++l++l+++++G  + +v++++a  + ++l++     ea++IG + +k+ ++
  CCG92925.1 255 VRgaceiLGLDPLHIASEGQFVAVVDQKKAVDFQKLLNDIPGgEEARIIGVISNKPPGK 313
                 9999999***********************777777776555568*******9987655 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.5   2.3e-18   2.1e-14       2      94 .]      40     151 ..      39     151 .. 0.91

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 2.3e-18
                 SSEE........EEEEEEEE.EECCTCCCC....HHHHHHHHHHHHHHTTTEEEEEEEEEEEEC......HHHHHHHHHHHHHHHTT-EEEEEEEEEES CS
        AIRS   2 Daav........vvttdshnrpvlvepvhf....iGakavavnlsDlaamGArPlalllslalp......wleevvrglaeaaeelgvplvgGdtsfsn 82 
                 Daa+        ++ttd    +++++p  f    iG++av ++++Dla+ GA+Pl++l s +l+       +++ v+ +a+aa+++ v ++gGdt++ +
  CCG92925.1  40 DAAIiewdktryALTTD----SYVISPLVFpggsIGELAVNGTVNDLAVSGAKPLVILSSWILEaglsmeVFQREVKAMARAAKAASVIIAGGDTKVVE 134
                 88955555566699***....888899999999***************************************************************997 PP

                 S.....EEEEEEEEEEE CS
        AIRS  83 e.....ptisvtavGlv 94 
                 +     ++i++t  Glv
  CCG92925.1 135 HgkgdgLYITTTGYGLV 151
                 78999999****99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2446.12
//
Query:       CCG92926.1  [L=370]
Description: Hydrogenase expression/formation protein hypD2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.8e-152  505.6   0.0   8.1e-152  505.3   0.0    1.0  1  HypD      Hydrogenase formation hypA family


Domain annotation for each model (and alignments):
>> HypD  Hydrogenase formation hypA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  505.3   0.0  4.5e-156  8.1e-152       2     350 ..      12     361 ..      11     362 .. 0.99

  Alignments for each domain:
  == domain 1  score: 505.3 bits;  conditional E-value: 4.5e-156
                 HHHHHHHHHHHHHHTSS-EEEEE--HHHHHHHHHTTHHHHS-TTEEEEE-S--TTTTS-HHHHHHHHHHHHH--EEEEE-CCHHG---TT--HHHHHHT CS
        HypD   2 lakkllekikkeakkerelkimevCGghthaivryglrslLpenielisGPGCpVCvtpeeeidkaielaekeevilatfgDmlrvpgskksLleakae 100
                 l+kk++e+i+++a+ + +++imevCGght +i+r+gl++l+p+n+eli+GPGCpVCv+p+++id+ +++ae+++vil++fgDm+rvpg+++s l +ka+
  CCG92926.1  12 LIKKTIEAIQQLADPKVHYRIMEVCGGHTFSIYRFGLHDLIPSNVELIHGPGCPVCVLPMGRIDEGLRIAEDPKVILTAFGDMMRVPGQTGSPLVLKAK 110
                 6899*********************************************************************************************** PP

                 T-EEEE-SSHHHHHHHHHH-TTSEEEEEEEE-HHHHHHHHHHHHHHHHHT-SSEEEEEEEE-HHHHHHHHHHTT.---SEEEEEHHHHHHHTTHHHHHH CS
        HypD 101 gadvrivyspldalkiakenpdkevvflavGFEttapatalalleakkeglknfsvlsshklvppalealleseelkidgfiapghvstviGlkayeel 199
                 g d+r+vyspld+lk+ake+p+kevvf+a+GFEttapatal+ll+a++ g+knfsv+++h+l+ pa++a+l+s+++++dgfi+pghvstviG+++y+++
  CCG92926.1 111 GRDIRMVYSPLDSLKLAKEHPKKEVVFFAIGFETTAPATALTLLKAQEWGIKNFSVFCNHVLILPAIRAILDSPDMRLDGFIGPGHVSTVIGCRPYAFV 209
                 *************************************************************************************************** PP

                 HHHH---EEEE-SSHHHHHHHHHHHHHHHHTT---EEETTTTT--TT--HHHHHHHHHHEEEEEE.EETTTEEEEEEEEEE-GGGGGGBGGGT----S- CS
        HypD 200 aeeykvpvvvaGFepldilqailmlvkqleegeaeveneYkrvvkeegnkkaqklieevfevrda.ewRglgvipksglklreeyaefdaekkfeleke 297
                 a++y++p+v++GFepldil++il +++ql+e+++even+Y rvv +egn++a +l+++vfe+r+  ewRglg i++s+lk+++e++ +dae +f ++  
  CCG92926.1 210 AQNYRKPIVISGFEPLDILESILRILRQLKEKKSEVENQYGRVVPWEGNRTALRLLQRVFELRSYfEWRGLGFIAQSALKIKKEFSYWDAELRFGTQGI 308
                 ****************************************************************99********************************* PP

                 --SS-TT--HHHHHTTS--GGGSTTBTTTB-SSS-SSHHHHSTT-HHHHHHHT CS
        HypD 298 eekekkackcgevlkGkakPedCklFgkaCtpenpvGacmvSsEGaCaayyky 350
                 + +++ka++cgevlkG++kP +CklFgk+C+pe+pvGa mvSsEGaCaayy++
  CCG92926.1 309 TLTDPKAAQCGEVLKGVLKPYQCKLFGKSCNPEHPVGALMVSSEGACAAYYHH 361
                 ***************************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2932.12
//
Query:       CCG92927.1  [L=124]
Description: (NiFe) hydrogenase metallocenter assembly protein HypC (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-25   88.2   0.0    3.9e-25   87.8   0.0    1.2  1  HupF_HypC  HupF/HypC family


Domain annotation for each model (and alignments):
>> HupF_HypC  HupF/HypC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0   2.2e-29   3.9e-25       1      65 []      26      99 ..      26      99 .. 0.95

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 2.2e-29
                CCEEEEEEEEEEET.......TEEEEECTTEEEEEEGTTC..TTB-TT-EEEEETTEEEEEE-HHHHHHHHHHH CS
   HupF_HypC  1 MCLaiPgkvveied.......elAlvdvgGvrrevslalv..eevkvGdyVLvhvGfAiekideeeaeetlell 65
                MCLaiPgk+ve++        ++Alv+v+ v+r+++++l+  e++k+Gd+VL+hvGfA+ ki+e+ea+  l++l
  CCG92927.1 26 MCLAIPGKIVEMDLndqtpfvQTALVEVSSVKRRINIELIkdEDPKPGDWVLIHVGFAMAKISEHEAQDQLRIL 99
                ***********98877888888******************9999*************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 958.76
//
Query:       CCG92928.1  [L=785]
Description: (NiFe) hydrogenase metallocenter assembly protein HypF [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-45  152.7   0.0      1e-44  152.1   0.0    1.3  1  Sua5_yciO_yrdC   Telomere recombination
    6.5e-30  103.8   0.1    1.4e-29  102.7   0.1    1.6  1  HypF_C           HypF Kae1-like domain
      2e-28   97.8  13.9    1.1e-15   57.1   2.1    2.4  2  zf-HYPF          HypF finger
    1.2e-20   73.7   0.1    2.6e-20   72.6   0.1    1.6  1  Acylphosphatase  Acylphosphatase
     0.0019   17.9   0.1      0.036   13.7   0.1    2.1  1  Carbam_trans_N   Carbamoyltransferase N-terminus
     0.0052   17.1   0.0      0.011   16.1   0.0    1.4  1  DUF3852          Protein of unknown function (DUF3852)
  ------ inclusion threshold ------
       0.39   10.3   3.4       0.62    9.6   0.4    2.6  2  TF_Zn_Ribbon     TFIIB zinc-binding
       0.98    9.5   7.2         33    4.6   7.2    2.6  1  DZR              Double zinc ribbon
        4.9    6.5   5.8        9.4    5.6   4.3    2.0  2  NMD3             NMD3 family


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.1   0.0   5.2e-48     1e-44       3     178 ..     217     393 ..     215     394 .. 0.97

  Alignments for each domain:
  == domain 1  score: 152.1 bits;  conditional E-value: 5.2e-48
                     HHTTSEEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-.TC--HHHHHHHHCT-SSSCEEEEE..E-T..S-HHHH CS
  Sua5_yciO_yrdC   3 lrkGgivaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklae.seveeealkllerfwPGpitlllkrskek..lpkeva 94 
                     + +G+iva+++++++ +++d +++++v rlre K+r  +kp+a+++++l+++k+++e s +ee +l++ ++    pi ll+k+++ +  l++++a
      CCG92928.1 217 ILAGEIVAVKGIGGFLIVADSYSDQTVLRLRESKKRA-HKPFALMFQDLKTVKEHTEiSGEEEMWLTSRQK----PIMLLRKKTNFSsaLSEHIA 306
                     568**********************************.*********************************....*******9877778****** PP

                     TTTTEEEEEE-SSHHHHHHHHHCTS-EEEEES-STTS-S-SSHHHHHHHC-TTSECB-SS-.--SSS---EEEETT..SSTSSECEX CS
  Sua5_yciO_yrdC  95 pglktvGvrlPdtplarlLlealgeplvaTSanlsgepsitdaeeveeelgeivdlildgg.eiavgvdstVvdlt..egkpkilRr 178
                     p ++t+G++l++ pl  lLl+ +++p++aTSan+sg+p++t++eev ++l+++vd +l ++ +iav++d++V+ ++   ++p +lRr
      CCG92928.1 307 PLQDTLGIMLAYAPLYVLLLDLIQHPVIATSANISGSPILTTEEEVFSQLQGVVDKVLTHNrDIAVPQDDSVMACSplTKTPILLRR 393
                     **************************************************************************9999889999998 PP

>> HypF_C  HypF Kae1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.1   7.3e-33   1.4e-29       3     102 .]     411     510 ..     409     510 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 7.3e-33
      HypF_C   3 ekevLAlGaelkntfalakggqallsqhlGdlenletleayeealeeleklleikpevivcDlhpdylstklaeelaekeklelievqHHhAHllavla 101
                 ++ +LAlG++lk+tf+l +++++++sq+lGdl n +++e+y++ l++++kl+++ p+++++Dlhp+y+st+l  e+++++kl+ + vqHH+AH+ avla
  CCG92928.1 411 SACLLALGSDLKATFSLCHESNVYVSQYLGDLGNWNAYETYQKVLTHFTKLFDLIPTAVAVDLHPRYHSTELGLEISKSNKLNPFFVQHHKAHFWAVLA 509
                 6789**********************************************************************************************9 PP

      HypF_C 102 e 102
                 e
  CCG92928.1 510 E 510
                 8 PP

>> zf-HYPF  HypF finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   2.1   5.4e-19   1.1e-15       1      34 []     113     146 ..     113     146 .. 0.98
   2 !   46.0   4.3   1.6e-15   3.2e-12       1      34 []     163     196 ..     163     196 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 5.4e-19
                 --HHHHHHHC-TTSTTTT-TT---TTTS--EEEE CS
     zf-HYPF   1 lCedClrEykdpldRRfhaqfisCtnCGPrlsli 34 
                 lCedCl E++ p++RRf ++fi+Ct+CGPr+s+i
  CCG92928.1 113 LCEDCLVELRSPTNRRFGYPFITCTQCGPRFSII 146
                 7*******************************97 PP

  == domain 2  score: 46.0 bits;  conditional E-value: 1.6e-15
                 --HHHHHHHC-TTSTTTT-TT---TTTS--EEEE CS
     zf-HYPF   1 lCedClrEykdpldRRfhaqfisCtnCGPrlsli 34 
                 +C +C+rEy++pldRRf+ q++sC++CG +l+l+
  CCG92928.1 163 MCYECQREYEEPLDRRFYSQTNSCKDCGITLRLY 196
                 9******************************986 PP

>> Acylphosphatase  Acylphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.1   1.3e-23   2.6e-20       2      85 .]      12      94 ..      11      94 .. 0.93

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 1.3e-23
  Acylphosphatase  2 rllvtGrVQgvgFRkfvrrlAkelglkGyvrNlsdgsVeivaegeeekvekfleelksgppk.arvdeveveeleeeeefkdFei 85
                     r+  +G+VQgvgFR+fv++lA++l l+G+v+N++ g V+i +eg++e+ve f++++  + p  a +++  +e++e ++  k+F+i
       CCG92928.1 12 RIHLKGKVQGVGFRPFVYKLAHRLALQGWVNNTTSG-VHIHVEGTQENVETFCRDIIDQAPSiAFISSSVFEKAEVKHY-KSFTI 94
                     6889********************************.*********************999989999999998777666.99987 PP

>> Carbam_trans_N  Carbamoyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   1.8e-05     0.036     123     305 ..     493     736 ..     433     743 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
  Carbam_trans_N 123 dvslyeHhlsHaaSaystSpFakkeklvlcldgdG.......diaprllaveketelkikslvsfse............................ 182
                     +  +++Hh +H + +        ++++vl +++dG        i+   + +++  + + k l++f                              
      CCG92928.1 493 NPFFVQHHKAHFWAVLAENDLLWQQQPVLGIVWDGtgygedgRIWGGEFFLFQRDQGM-KRLAHFEYfpllladkgikeprisalgiwssqvgtl 586
                     34699****************************8622222226888888888887776.789998888999999999999999999999999999 PP

  Carbam_trans_N 183 ...............................siGhlYaaateylGfkknsdegKlmalaayGkpk..eriveelyellkka.gyrinlennieis 243
                                                    s+G+++  +  +lG    +      a +++ k +    +   l +  +   ++++  e+++  s
      CCG92928.1 587 delnflrpkfsaiewraylkmleakkyalssSVGRIFDGVASILGLCDYT-TFEGQAAIELQKQAtrYALSVGLWNNTHAIkNWKVP-EAKLYNS 679
                     99999999999999999999999999999999999999999999988877.555566677766662222222233333222245544.6666666 PP

  Carbam_trans_N 244 kkkvhdffeasalrlkearekdedlaAsiqvflErlvvevlnivyeklkirnLclaGGvalN 305
                        + ++f+ ++ +++e+++++e++a  ++++l +lv ++ n    ++++r+++ +GGv  N
      CCG92928.1 680 VVYLGQLFQWIR-QMAEEKRPKEEIAFGLHYWLAQLVGRLAN----EFQVRKIAFSGGVFQN 736
                     667789999999.55555555599999999999999866544....5778999999999888 PP

>> DUF3852  Protein of unknown function (DUF3852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.4e-06     0.011      10      55 ..     320     366 ..     313     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.4e-06
     DUF3852  10 lvvlilaallavtalAasgdvag.aiestwkeaksqiktvvnnvvfp 55 
                  + ++l+ l+  +++A+s++++g +i +t +e+ sq+++vv++v++ 
  CCG92928.1 320 PLYVLLLDLIQHPVIATSANISGsPILTTEEEVFSQLQGVVDKVLTH 366
                 4556777888999*********846*******************986 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.2      0.31   6.2e+02      20      27 ..     134     141 ..     133     143 .. 0.84
   2 ?    9.6   0.4   0.00031      0.62       3      22 ..     186     205 ..     184     207 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.31
                   EEESSSSB CS
  TF_Zn_Ribbon  20 lvCtdCGl 27 
                   ++Ct CG+
    CCG92928.1 134 ITCTQCGP 141
                   58****96 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00031
                   ETTTTCEECHEETSTTCEEE CS
  TF_Zn_Ribbon   3 CPnCgstnlveDpergelvC 22 
                   C++Cg t  ++D  r+el C
    CCG92928.1 186 CKDCGITLRLYDKQRNELSC 205
                   ******************** PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.2     0.017        33      13      49 .]     134     190 ..     105     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.017
         DZR  13 rfCseCgtklkavaa............edrCpsCgek..vdpearf......CpeCG 49 
                 ++C +Cg + +   +             ++C +C+++   +++ rf      C+ CG
  CCG92928.1 134 ITCTQCGPRFSIILSlpydrqrttmasFKMCYECQREyeEPLDRRFysqtnsCKDCG 190
                 467777777554444667778888888888888888755567777788888888887 PP

>> NMD3  NMD3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2     0.055   1.1e+02      14      42 ..     112     140 ..      98     149 .. 0.85
   2 ?    5.6   4.3    0.0047       9.4       1      46 [.     136     196 ..     136     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.055
        NMD3  14 glCedCllkevditegiekievevCkeCg 42 
                 +lCedCl++    t+    + +  C +Cg
  CCG92928.1 112 DLCEDCLVELRSPTNRRFGYPFITCTQCG 140
                 39*********9999888899*******9 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0047
        NMD3   1 CcrCGkei...........eeling......lCedCllkevditegiekievevCkeCgryl..p 46 
                 C +CG +            +    +      +C +C ++  + ++     +++ Ck+Cg  l  +
  CCG92928.1 136 CTQCGPRFsiilslpydrqR----TtmasfkMCYECQREYEEPLDRRFYSQTNSCKDCGITLrlY 196
                 88999888777777765431....1345678**************9999**********888552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.74u 0.25s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 5314.03
//
Query:       CCG92929.1  [L=236]
Description: High-affinity nickel transporter [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0049   16.3   1.2     0.0049   16.3   1.2    3.2  3  HupE_UreJ  HupE / UreJ protein
  ------ inclusion threshold ------
       0.04   13.3  13.1        0.1   11.9  13.1    1.6  1  NicO       High-affinity nickel-transport protein
        5.6    7.5  12.9       0.45   11.0   2.2    2.8  2  PhoR       Phosphate regulon sensor protein PhoR


Domain annotation for each model (and alignments):
>> HupE_UreJ  HupE / UreJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.2   8.3e-07    0.0049      20      46 ..      11      37 ..       5      66 .. 0.82
   2 ?    1.1   9.7      0.04   2.4e+02       8      71 ..     131     188 ..     125     206 .. 0.66
   3 ?    0.6   0.4     0.057   3.4e+02     134     176 ..     185     227 ..     167     229 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.3e-07
   HupE_UreJ 20 agllaGlaHPllGlDHLlamvavGlwa 46
                +gl+aG++H l+G DHL a++ + + +
  CCG92929.1 11 TGLVAGFIHALTGPDHLSAIAPLAIES 37
                69****************998766544 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.04
   HupE_UreJ   8 saalAHpghge.aagllaGlaHPllGlDHLlamvavGlwaaqlggrallllplafvaamlvGall 71 
                 s+   H+ h + +a+l  Gl+H + G  H+l  +   ++a+ +++     l++ +v+ + +Ga+l
  CCG92929.1 131 SPLHEHSPHYHtHASLGIGLLHGIAGSNHFLGALP--VLAFPTQA-----LAALYVLGFGLGAIL 188
                 56666888887688***************987554..55555532.....222233333333333 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.057
   HupE_UreJ 134 ayalGfvlatallhlagiglglllkraaaallrllGaaialaG 176
                   +lG+++ + +l  + +   + +kr+ ++l  ++G + + +G
  CCG92929.1 185 GAILGMIVFSFFLSRMVFSQLVDTKRKGKWLNICFGSLAIGVG 227
                 2445555555555555555555566666666666666666665 PP

>> NicO  High-affinity nickel-transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  13.1   1.7e-05       0.1      12     230 ..      16     226 ..       8     232 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
        NicO  12 GvrHAv.dagHgkaiirklmqagktalkrGillslgsslvvvlvavllvvaavlvlrltslsetgaaigteiasFllvilllnllllrklrklfrkler 109
                 G  HA+ +++H+ ai    +  +k a k G++ +lg+s    ++av+l ++  l+         +   + e a  +++++++++ +    r++f+k  +
  CCG92929.1  16 GFIHALtGPDHLSAIAPLAIESRKAAWKIGLFWGLGHSGGIWILAVILFFFRNLFPI------AQLSRWSEKAVGIVLMGIGIWSI----RRVFQKKIH 104
                 88999769*******9999*******************8887777777766555443......44456777778889999999976....556666666 PP

        NicO 110 lgrapaaeleaalakrgllsrilgklfrlitkswhmypvgflfglGfdtateiallaidps..ealkgdsfdsilalpalfav..Glrlcdgadivlmf 204
                 +   ++  +e+ + + +  + ++  +  l+ ++  +y+ +   g G      +  + + +    a+ ++++++  +l + + +  G++ ++  ++ ++f
  CCG92929.1 105 IHSHHHDGIEHCHIHYHEETPAVSSTSPLH-EHSPHYHTHASLGIGLLHGIAGSNHFLGALpvLAFPTQALAALYVLGFGLGAilGMIVFSFFLSRMVF 202
                 566677777777777777777776655444.45566777778889988887777777766622444444444444444333222244444433333333 PP

        NicO 205 aalnwaflg.grklvyamsitgtsitv 230
                 +    +  +  +  ++++  ++++i v
  CCG92929.1 203 SQ---LVDTkRKGKWLNICFGSLAIGV 226
                 32...2222233456666666666655 PP

>> PhoR  Phosphate regulon sensor protein PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.2   7.5e-05      0.45      18      67 ..      45      93 ..      40     108 .. 0.89
   2 ?    2.5   1.5     0.033     2e+02       9      52 ..     174     215 ..     164     217 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.5e-05
        PhoR 18 lvgllvgalaallllalllllawhlyqllrLsrWLrkpkklepPdgsGlW 67
                 + + +g+ +  ++la++l+ +++l+ +++LsrW +++  + +  g G+W
  CCG92929.1 45 GLFWGLGHSGGIWILAVILFFFRNLFPIAQLSRW-SEKAVGIVLMGIGIW 93
                567889****************************.888888888888888 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.033
        PhoR   9 lallllaallvgllvgalaalll..lalllllawhlyqllrLsrWL 52 
                 la+l     ++g+ +ga+  +++  ++l  +++ +l  ++r  +WL
  CCG92929.1 174 LAAL----YVLGFGLGAILGMIVfsFFLSRMVFSQLVDTKRKGKWL 215
                 3333....35556666665555545556677888888877777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1461.21
//
Query:       CCG92930.1  [L=266]
Description: (NiFe) hydrogenase nickel incorporation-associated protein HypB, GTPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.4e-28   97.0   0.0    1.3e-27   96.6   0.0    1.2  1  cobW         CobW/HypB/UreG, nucleotide-binding domain
    0.00028   20.8   0.0      0.034   14.1   0.0    2.2  2  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0   1.4e-31   1.3e-27       2     176 ..      74     235 ..      73     236 .. 0.95

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 1.4e-31
                 EEEEEESTTCCHHHHHHHHH.CT--SS-EEEEESS-SSCHCCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEEEEEECT.TTTHHH CS
        cobW   2 vtvltGflGsGKTtLlnhll.enraglklavivNefgevsiDaellretgveivelenGciCctlredllkelealeereerldviliEttG.laePap 98 
                 ++++ +++GsGKT+Ll +++ + + +   avi+++++  +iDa+++r+tgve+v++++G+ C+  ++ +  +le+++  +    ++ iE++G l +Pa 
  CCG92930.1  74 ALNVISSPGSGKTSLLVKTIeAFQGKFPQAVIEGDQQ-SEIDAQRIRQTGVEAVQIQTGKGCHLDAHSIGHALEEILLPS--EGILWIENVGnLICPAL 169
                 578999**************555666789********.**************************************9998..4899************* PP

                 HHTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC...HHHHHHHHHHHHTTS-EE CS
        cobW  99 vafteeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldee.allekleerlrqlnpeakvl 176
                           dl ++  v ++++    ae+++++ k+++ +  adllvl+K+Dll+++ +++ek+ + lr+++p+++v+
  CCG92930.1 170 F---------DLGETKRVLLLSV----AEGDDKPLKYPEAFYGADLLVLTKIDLLPYVdFSVEKCMDGLRRIRPGMEVV 235
                 *.........*************....9**********************************************99986 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.1    0.0031        28      48     123 ..      21     119 ..      13     148 .. 0.67
   2 !   14.1   0.0   3.8e-06     0.034      50     106 ..     202     261 ..     191     265 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0031
                  EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT....................... CS
  RsgA_GTPase  48 epvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpe....................... 122
                  +p ++ +  D  +++e   e   +  +l+++vl ++++  ++ ++l ++ k     ++ + G GK++L+ + ++                        
   CCG92930.1  21 HPELIHSHHDHNDHKEIEAEKPRDQVKLQMDVLETNSRFAKTNRSLFSARKILALNVISSPGSGKTSLLVKTIEAfqgkfpqaviegdqqseidaqri 118
                  5666667777777777333444566788899999999988888899888888777788899******9876655544555555555555555555544 PP

                  - CS
  RsgA_GTPase 123 l 123
                   
   CCG92930.1 119 R 119
                  4 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 3.8e-06
                  EEEEE-GGG--HHH.HHHHHHHHHHHT..TSEEEE--TTTHTTHHHHHHHCTTSEEEEEC CS
  RsgA_GTPase  50 vivlnKiDlleeee.eleelkeeleal..gyevllvsaktkegleelkellkdktsvlvG 106
                  ++vl+KiDll   + ++e+ ++ l+++  g+ev+++sakt+eg+e+  ++++++++++ G
   CCG92930.1 202 LLVLTKIDLLPYVDfSVEKCMDGLRRIrpGMEVVALSAKTGEGIEKWLHWVNQQLATVRG 261
                  79*********999999****999988668***********************9998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1886.46
//
Query:       CCG92931.1  [L=109]
Description: hypothetical protein MFUM_870011 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   13.4   0.1      0.028   13.1   0.1    1.0  1  EVC2_like  Ellis van Creveld protein 2 like protein
       0.25   11.6   0.2       0.25   11.6   0.2    2.0  2  Orf78      Orf78 (ac78)


Domain annotation for each model (and alignments):
>> EVC2_like  Ellis van Creveld protein 2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.1e-06     0.028      32     122 ..       5      94 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.1e-06
   EVC2_like  32 sNssqnngtslgpltasltltveekekvlpnhglhaagfvvaflvslvLtllvllllartralkvsllsrkr..qknreeskleksqfnsaeg 122
                 +Nssq  ++ l+  +a++    +  +k l+n  +  + ++++++++l+L +l  +l + +r+   + + ++   +     ++ +k +++++++
  CCG92931.1   5 KNSSQDFKVRLKEAQAHFLESLKRVSKNLSNENILLISLIIGIIIGLLLYSLRWILSKIIRIGFLYYILQQLwnI---LTKDNQKTDSKTSSE 94 
                 699999999***9999999999999999*********************************99999999988532...222222223332222 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   2.8e-05      0.25      44      85 ..      10      58 ..       1      65 [. 0.64
   2 ?    0.5   0.8     0.083   7.4e+02      33      48 ..      84      99 ..      76     109 .] 0.35

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.8e-05
       Orf78 44 aeknditekesn.......aaekaqalnillisllavvcvlvllyviyY 85
                  k++++e++++        +++ +++nillisl+  +++ +lly + +
  CCG92931.1 10 DFKVRLKEAQAHfleslkrVSKNLSNENILLISLIIGIIIGLLLYSLRW 58
                222333333333333344467788999******************8866 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.083
       Orf78 33 kaenkkekksaaeknd 48
                +++++++++s ++++ 
  CCG92931.1 84 NQKTDSKTSSETSNSP 99
                2222222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                      719  (0.0401026); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 781.81
//
Query:       CCG92932.1  [L=180]
Description: hypothetical protein MFUM_870012 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1221.91
//
Query:       CCG92933.1  [L=222]
Description: Outer membrane receptor protein, mostly Fe transport (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-07   29.6   0.2    1.4e-06   28.8   0.2    1.4  1  Plug      TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.2   7.9e-11   1.4e-06       5     107 ..      77     174 ..      73     175 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 7.9e-11
                 CSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGC.SSBGGGEEEEEEEESSCHCTTSS CS
        Plug   5 tpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpianggsgagdls.sidpedierievlkGpasalyGs 102
                 +p  +  v++e++++ +a +++d+ +  p++n  ++ +g+  s+ +iRGl     +v+++G+ +  g+s++g++s  +++ +  ++++++ p s ++G 
  CCG92933.1  77 IPRDIRPVSQEEMKTVMALTVNDLASFNPSINP-TQATGNIVSEPVIRGL---PGTVFRNGMLV--GFSSGGNWSpLMNTMAYGSLDIVTSPVSIIFGP 169
                 66677779************************9.999999**********...799******98..57888888835799******************9 PP

                 TGSSE CS
        Plug 103 daigG 107
                 +  +G
  CCG92933.1 170 QEFAG 174
                 99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1662.77
//
Query:       CCG92934.1  [L=211]
Description: hypothetical protein MFUM_870015 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1617.12
//
Query:       CCG92935.1  [L=414]
Description: hypothetical protein MFUM_870016 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2887.98
//
Query:       CCG92936.1  [L=181]
Description: hypothetical protein MFUM_870017 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-19   70.6   0.0    1.2e-19   70.4   0.0    1.1  1  HycI      Hydrogenase maturation protease


Domain annotation for each model (and alignments):
>> HycI  Hydrogenase maturation protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0   6.9e-24   1.2e-19       1     129 [.      20     146 ..      20     147 .. 0.94

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 6.9e-24
                 HHHHHHHHHHEC--T.TEEEEEECT-SGGGHHHHCC.-SEEEEEEE--SSS-TT-EEEEECCHHHHHHTTC.CGCCCHCHHHHHHHHHHCCS--SEEEE CS
        HycI   1 vrvvekLkrryefke.nvtviDgGtqglelvgtlee.adkliivDavdfglepGevkiikddevpkklkakkmsaHqlplaevlklleekgeipkevil 97 
                 v+v++++ ++y+++  ++ ++D G    +l + l++ +d  ii+Dav  g+ pG+++++  ++ p    ++++  Hq+++  +l+ + + g ip+++ l
  CCG92936.1  20 VEVIQSIRKTYYPPSpSLSIMDFGIRTVDLAFELTNgYDWAIIIDAVFLGNPPGRIYLLHPKDYPL---NSSFHPHQMDIPSMLNFAGQLGSIPQQIYL 115
                 6899999999999988*************************************************5...44477************************* PP

                 EEE--S-BST.CCS--HHHHCCHHHHHHHCCC CS
        HycI  98 lgvqpesledvgielseevkkavekavelile 129
                 +g++pe++e+ +i+ls+ v++av   ++++++
  CCG92936.1 116 IGCEPETIEE-KIGLSSSVQQAVRHTANVLIK 146
                 **********.************999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1206.67
//
Query:       CCG92937.1  [L=604]
Description: Nickel-dependent hydrogenase, large subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-66  225.8   0.0    8.4e-47  160.2   0.0    2.1  2  NiFeSe_Hases  Nickel-dependent hydrogenase


Domain annotation for each model (and alignments):
>> NiFeSe_Hases  Nickel-dependent hydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.1   7.4e-22   1.3e-17       1      81 [.      60     140 ..      60     176 .. 0.94
   2 !  160.2   0.0   4.7e-51   8.4e-47     151     505 .]     182     580 ..     160     580 .. 0.78

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 7.4e-22
                   --HHHHTTTS-GGGHHHHHHTT-SSSTTHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTS-T CS
  NiFeSe_Hases   1 RGlElilkgrdprdawalvqRiCGVCttvHalasvravedAlgikipknarlirnliaaalllhdhivhFYhLhalDwvdv 81 
                   RG  +++kg+dprda+++++RiCG+C   Ha +sv   + A+++++p+ ++ i nl +aa+++ dh ++  +L a+D+++ 
    CCG92937.1  60 RGYSIFMKGKDPRDAHFITSRICGICGDNHAACSVYNQNMAFKVRPPHLGEWICNLGEAAEYMFDHCIFQENLVAVDFCEK 140
                   8999**************************************************************************985 PP

  == domain 2  score: 160.2 bits;  conditional E-value: 4.7e-51
                   HHHHHHHHHHHHHTHHHHHHHSSSSS--.EBTTBESSGBGSBSHHHHHHHHHHHHHHHHHHHHTH..HHHHHHHHHHTGGGGCS--GGGGT-EE.EE CS
  NiFeSe_Hases 151 ahYLeaLelqrkaakivaifggknPhpqslvvGGvtcaidllnaerlaevkslikevkefveevy..lpDvlaiakaYkdwakigkglgkknfl.sv 244
                   + Y eaL + r + ++  ++ g++ hp++l +GGv ++   ++++ ++++ + + +  ++v+++     Dv+    +Y+    +++  + + +l ++
    CCG92937.1 182 EFYREALVMSRVTREMFCLMEGRHVHPSTLYAGGVGTV---PSVQLFTDYLTRLMKYIDWVKKAVpmHDDVF--NFFYQALPGYEEVGKRRILLgCW 273
                   5699**********************************...8899999999999999999999862144554..44555444333322222222234 PP

                   EEEESSTT-STT.GGE.......EEEEEEESTTETTSEBEE-.TTTEEEE-TTSSBS............TS-........B-GGG---EB---EEE- CS
  NiFeSe_Hases 245 gefpeekseelk.esl.......llpsGvilngdlskveevd.eekitEevkhswYk............eks........lhplegetepkytleel 312
                    ++p+ +  + + e++       +++ G++++g+l +++ v+ +  i+    +s+Y+            + +        +hp++ +t pk   ++ 
    CCG92937.1 274 SSLPDPEFCDFRyETMtdwarksFVTPGIVVDGELLTTDLVEiNLGIRILLGSSYYDdwvesnghyrvtR-DplgnpvdpRHPWNVDTLPKP--QKR 367
                   4444433333222111233444499***********9999997778999999999998876655554431.145555556888888888855..478 PP

                   -TTSB-BSS-EEEETTB......--BESHHHHHHHHHHTT-HHHHHHHHHHHHHHT...............-HGGGGSSHHHHHHHHHHHHHHHHHH CS
  NiFeSe_Hases 313 deegkYswikaPrykgk......amevGplarvlvayakgkeevkelvdkllkklg...............lkvealfstlGRtaaRaleakliael 388
                   d +gkYsw+ +Pr+ +k       +  Gplar+ v+  +g  ++  +v+++ ++++                kv ++  t+ R  aR +  +++a l
    CCG92937.1 368 DFKGKYSWVMSPRWFDKrsylalDTGGGPLARLWVTALAGLVKT-PYVEATGNSVKihlpktatrgplsleWKVPQWSNTIERDRARSYFQAYAAGL 463
                   889***********99944332223458******9999885443.344444444444456777899999889999********************** PP

                   HHHHHHHHHHHHHTTB---B--TT-SGGGS-SEEEEEEEEEETTEEEEEEEEEETTEEEEEEEE-HHHHHH--S-TT----HHHHHHTT-B-SSTT. CS
  NiFeSe_Hases 389 lkewldelvenikkgdtetaneekldkkevpkeakGvglveapRGaLsHwikikdgkienYqavvPsTWnasPrdakgqkgayEaaLigtpvadpe. 484
                      ++++  e+++kg t+t+n       evpkea  +g++ea RG+LsH++ i++gki+nYq   P+ Wna Prd  g++g+yE a+ +tp+ +++ 
    CCG92937.1 464 GLYFVEKALEEVRKGHTKTWNPF-----EVPKEAISCGFTEAVRGVLSHHMIIENGKIANYQPWPPTPWNANPRDIYGTPGPYEDAVQNTPIFEENs 555
                   ***************88877666.....99**************************************************************76552 PP

                   ....S-HHHHHHHHHT--BHHHHH- CS
  NiFeSe_Hases 485 ....kPleilrtihSfDPClACavH 505
                       k ++i+rt++SfDPCl C vH
    CCG92937.1 556 eehfKGIDIMRTVRSFDPCLPCGVH 580
                   333368******************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4472.66
//
Query:       CCG92938.1  [L=351]
Description: Nickel/iron-hydrogenase I small subunit, HyaA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-26   91.3   0.4    7.1e-26   90.6   0.0    1.6  2  Oxidored_q6     NADH ubiquinone oxidoreductase, 20 Kd subunit
      3e-24   85.2   4.2      7e-24   84.0   4.2    1.6  1  NiFe_hyd_SSU_C  NiFe/NiFeSe hydrogenase small subunit C-termi


Domain annotation for each model (and alignments):
>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0     8e-30   7.1e-26       1     130 [.      26     193 ..      26     194 .. 0.91
   2 ?   -4.4   1.6       1.8   1.6e+04      79      89 ..     269     279 ..     265     290 .. 0.75

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 8e-30
                  -SHHHHHH.T-TTTTHHHHH.HTEE....EEEETTT-S--HHH.......HHHTHTTTSEEEEEESBE...E...................EEHHHHH CS
  Oxidored_q6   1 CtGcsisl.laleedlldll.elie....lryhetlladskee.......eieakekeadvlvveGavtrkp...................kealell 66 
                  C+G+s++l +a++++++dl+ +++     +++h++l+  +  +       ++ ++e + ++lvveG++++++                    ++ +++
   CCG92938.1  26 CDGDSVALtAASQPSIEDLVlGVFPglpkVQFHWPLIDYHTGDdfiewffKADRGEVDPFILVVEGSIPNEKikvegywagfgndpstgqpMTTSQWI 123
                  *******************9999888888*******99988779******999***************9999*******************9****** PP

                  HHHGGGSSEEEEESHHHHH-TGGGSTT-T..EE-HHHHHHHC........S-E.EEE-SSS--HHHHHHHHHH CS
  Oxidored_q6  67 kelaekakaviavGtCAafGGipaaannp..svgeevgellev.......vpvdinipGCPphpeailetlla 130
                  ++la+ka av+a GtCA++GG++a+a+np  ++g    ++l++       +p+ + +pGCP++p+++ et+l+
   CCG92938.1 124 DRLAPKAWAVVAAGTCATYGGVHAMAGNPtgAMG--LPDYLGWkwkskagIPI-VCVPGCPIQPDNLSETFLY 193
                  *****************************87776..33444445556667***.***************9876 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 1.8
                  ESHHHHH-TGG CS
  Oxidored_q6  79 vGtCAafGGip 89 
                  +G C   GGi 
   CCG92938.1 269 IGGCPNVGGIC 279
                  57777777775 PP

>> NiFe_hyd_SSU_C  NiFe/NiFeSe hydrogenase small subunit C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   4.2   7.8e-28     7e-24       1      80 []     217     295 ..     217     295 .. 0.98

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 7.8e-28
                     HSSBCGGC-TTHHHHHHT-B-SSTTSHTSBSGGGT--GGG-BSSTTTC-BTTTTB-TTTTTS----TTSTTGGGGSSSTT CS
  NiFe_hyd_SSU_C   1 ygktihdnCerreyfdagefaeefgdeegClyklGCkGpvtyadcpkrkwnegvswpvkagapCigCtepgfpdkkspfy 80 
                     +++t+h++C+r +y+++g+f++ +g+ ++Cl+k+GC Gpv+++++pkr w +g   + ++g  CigCt+pgfpdk++pf+
      CCG92938.1 217 FEQTVHEGCDRGGYYEQGQFVNGYGE-KECLVKVGCWGPVVKCNVPKRGWMGGIGGCPNVGGICIGCTMPGFPDKFMPFM 295
                     899***********************.**************************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2358.39
//
Query:       CCG92939.1  [L=59]
Description: hypothetical protein MFUM_870020 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.028   14.5   0.0      0.031   14.4   0.0    1.1  1  Peptidase_S66  LD-carboxypeptidase N-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_S66  LD-carboxypeptidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.7e-06     0.031      52      86 ..      11      45 ..       6      54 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-06
                   HHHHHHHHHHC-TTECEEEES--SS-CHHCHHHH- CS
  Peptidase_S66 52 eRaadLnealadpeikaiicarGGygaarllpyld 86
                   e +++Ln+ l+d ++ ai+ + GG+ ++r l  l 
     CCG92939.1 11 EYFSSLNKTLTDYSVIAILECDGGKSVSRNLTDLS 45
                   55789************************998884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 467.99
//
Query:       CCG92940.1  [L=210]
Description: Predicted proline hydroxylase (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-10   41.5   0.0    2.7e-10   41.0   0.0    1.2  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
    3.7e-07   30.7   0.0    6.1e-07   30.0   0.0    1.4  1  2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.05   13.3   0.2       0.12   12.1   0.2    1.6  2  DnaA_N          DnaA N-terminal domain


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   4.6e-14   2.7e-10      14      95 ..     105     181 ..      97     182 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 4.6e-14
                     EE-SS----TT.-.EEEEEEEEE.....ET-B--EEE.............---TT-EEEEE-..B-TEEE--B.-SS-EEEEEEEE CS
  2OG-FeII_Oxy_3  14 pHvDnfekeegsgqrrltvllyLne.keseeGGelelyekdk...eavkikpkkgrlvlFesdellpHevlpvtkggeRlsltgwi 95 
                      H+D       s+ + +t+l+yLne +e+ +GG l+l ++++    a++++p  g+l++F+ ++ + H++lp +   +R+++  w+
      CCG92940.1 105 IHTD-------SEWKLVTLLIYLNEeWEP-QGGRLRLLRSKNindFAAEVPPDWGSLIIFKRSDNSYHGHLPFEG-ERRVVMLNWV 181
                     4666.......35799*********9999.*******99999998899999**********999999*****955.4999999997 PP

>> 2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0     1e-10   6.1e-07      15      91 ..     106     180 ..      98     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1e-10
  2OG-FeII_Oxy_4  15 HdDvlegeRrvayilyleeeWkeddGGaLllsdde..gdvtksivPkwnqlvlFevkeshsvaevasvaekeRlsisgW 91 
                     H D+  + + v++++yl+eeW+++ GG L+l +++  +d++ +++P w++l++F+ + ++s +    ++ ++R+ +  W
      CCG92940.1 106 HTDS--EWKLVTLLIYLNEEWEPQ-GGRLRLLRSKniNDFAAEVPPDWGSLIIFKRS-DNSYHGHLPFEGERRVVMLNW 180
                     7777..67899**********985.99996655442479***************984.455666666777888777777 PP

>> DnaA_N  DnaA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.8   1.1e+04      19      29 ..      59      69 ..      58      74 .. 0.72
   2 ?   12.1   0.2     2e-05      0.12       4      32 ..     180     208 ..     178     210 .] 0.89

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.8
      DnaA_N 19 sfdtWikplkl 29
                +f ++i++l+ 
  CCG92940.1 59 AFASFIEELES 69
                58888888875 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2e-05
      DnaA_N   4 WsavlerLkkelgeqsfdtWikplklfal 32 
                 W + +e+Lkkel++++f++ +k+l +f +
  CCG92940.1 180 WVTDQEKLKKELERHNFSSLFKKLVPFTI 208
                 666689*******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1556.44
//
Query:       CCG92941.1  [L=650]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-20   73.1   1.0    6.6e-10   38.9   0.1    2.4  3  DUF799    Putative bacterial lipoprotein (DUF799)
  ------ inclusion threshold ------
      0.022   14.1   0.0        2.2    7.5   0.0    2.5  2  CsgG      Curli production assembly/transport component CsgG
      0.063   13.2   0.0        0.2   11.6   0.0    1.8  1  Slx4      Slx4 endonuclease


Domain annotation for each model (and alignments):
>> DUF799  Putative bacterial lipoprotein (DUF799)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.5   9.1e+03      10      22 ..      68      80 ..      63      82 .. 0.79
   2 !   38.9   0.1   1.1e-13   6.6e-10      39     129 ..     118     208 ..     108     226 .. 0.94
   3 !   32.3   0.0   1.1e-11   6.7e-08      38     131 ..     472     565 ..     463     592 .. 0.93

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.5
      DUF799 10 kPksilvlpplne 22
                 Pksi vlp +++
  CCG92941.1 68 PPKSIAVLPFVDK 80
                69******98775 PP

  == domain 2  score: 38.9 bits;  conditional E-value: 1.1e-13
      DUF799  39 PlaeaGyYvlpvavveetfkqnGlteaediqevslaklreifgaDaalYlkvteyGtsYkvidsetevsasaklvDlrtGktlWegsatas 129
                  la   yY +    v+ ++k+ G+++++d++++s++ l + ++ Da++Y  v++y + Y+ i    +++a+ +++ ++tG++l+  sa+ +
  CCG92941.1 118 NLAQREYYPIKLEKVDAVLKEHGIKNSTDLSKISPEVLGSWLNVDAVIYGIVKNYESYYAGIICGYSIAADVQMISTKTGDQLFYSSASRN 208
                 589999*****************************************************************************99887655 PP

  == domain 3  score: 32.3 bits;  conditional E-value: 1.1e-11
      DUF799  38 aPlaeaGyYvlpvavveetfkqnGlteaediqevslaklreifgaDaalYlkvteyGtsYkvidsetevsasaklvDlrtGktlWegsatasse 131
                   la   + +l ++ ++ ++k+ Gl++ +d+ +v+ + l   +  D+ +Y +vt+y   Y+++ ++ +v a+ +lv +++G tl + +at +s+
  CCG92941.1 472 CYLAQRDFDILNIGETDTILKSHGLSTMKDLLSVPSNTLGRWLSVDSLIYGEVTTYEGFYSIVWAAWRVGAKLNLVSTHSGITLLTTQATRTSN 565
                 5688899999***************************************************************************999987765 PP

>> CsgG  Curli production assembly/transport component CsgG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00037       2.2      37     104 ..     108     175 ..      69     206 .. 0.75
   2 ?    3.9   0.0    0.0049        29      11     102 ..     425     528 ..     418     532 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00037
                 -STHHHHHHHHHHHTTSEEEEE-TTHHHHHHHHHHHHHHHTTT.T-----S----SEEEEEEEEEEEEE CS
        CsgG  37 gqglsdmLvqaLvksgwFvvlERedLqnlltErelirsgrkka.taaqlgkllgAdllveGsitaydvn 104
                  q +  +   +L++ + ++++  e+ +++l+E  + +s+   +   + lg+ l++d+++ G + +y++ 
  CCG92941.1 108 AQRVRKLIYGNLAQ-REYYPIKLEKVDAVLKEHGIKNSTDLSKiSPEVLGSWLNVDAVIYGIVKNYESY 175
                 45566666666654.56889999****************999999999******************985 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0049
                 EEEEEEEEETT-.............-B--TTS.-TT-BSS-STHHHHHHHHHHHTTSEEEEE-TTHHHHHHHHHHHHHHHTT..T.T-----S----SE CS
        CsgG  11 riaVldfsnqtg.............qykpqan.ssfstavgqglsdmLvqaLvksgwFvvlERedLqnlltErelirsgrkk..a.taaqlgkllgAdl 92 
                 +ia+l+fs+q++             +   +++ ++++  vg+ +  +    L++ + F +l   + + +l+   l      +  +  +++lg+ l++d 
  CCG92941.1 425 TIAILPFSDQATggnllinhiplfpK--TKEQkENWRWTVGNRIRKAIACYLAQ-RDFDILNIGETDTILKSHGLSTMK--DllSvPSNTLGRWLSVDS 518
                 78888887777778888888876532..23333777888888888888887775.568888888888888888884444..444778999********* PP

                 EEEEEEEEEE CS
        CsgG  93 lveGsitayd 102
                 l+ G +t y+
  CCG92941.1 519 LIYGEVTTYE 528
                 *********8 PP

>> Slx4  Slx4 endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.4e-05       0.2      21      53 ..     124     160 ..     123     166 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.4e-05
                 T--EEHHHHHHHHHHH-GGGG......GS-HHHHHHHHH CS
        Slx4  21 YePIvLedltawLnteglglk......evdpaelrewcd 53 
                 Y PI Le++ a L+++g+  k      +++p+ l  w+ 
  CCG92941.1 124 YYPIKLEKVDAVLKEHGI--KnstdlsKISPEVLGSWLN 160
                 89**************66..6679999*********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 4077.39
//
Query:       CCG92942.1  [L=303]
Description: Multidrug resistance efflux pump [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-21   75.7   0.2    9.8e-21   74.0   0.2    1.7  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    4.2e-17   61.7   0.0    2.5e-11   43.2   0.1    2.5  2  Biotin_lipoyl_2  Biotin-lipoyl like
      2e-15   57.4   0.0    6.6e-14   52.5   0.0    2.4  2  HlyD_3           HlyD family secretion protein
    2.4e-06   27.3   0.0      3e-06   27.0   0.0    1.3  1  HlyD             HlyD membrane-fusion protein of T1SS
    0.00016   21.4   0.1      0.097   12.5   0.0    2.5  2  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
      0.064   12.0   0.0      0.064   12.0   0.0    2.7  3  HlyD_2           HlyD family secretion protein


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.2   3.3e-24   9.8e-21      18     185 ..      34     206 ..      29     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 3.3e-24
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXX.........XXXXXXXXXXX.XXXXXXXXXXXXXXXXX CS
    HlyD_D23  18 rlarvsarveGwveklyvnatgdkVkkGqpLaelyspelva..aqeeyllalkakkklkkke........lleaarerLrl.lgvseeqiaelektgkv 105
                 +++r++++v+G++e+l ++    +VkkG+ L++++s + +a  a ++ +  l++++ l   +         l+a +  L l  +v  ++i +le+    
  CCG92942.1  34 HVVRIASKVSGYIETLLAQ-DNWEVKKGELLVKIDSRDYMArvAVADAIRKLAQTEWL---RirqlsvinALSAFNYDLALaTNVMTRSILRLESL--S 126
                 6899***************.8889**************98622223333333333333...14447777778888888876247888888888754..5 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 106 qktvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiy 185
                   ++++++pi+G +t++++ eG+yv++g+ l++i + ++ W++ +  e+ql+++++gq+++v+++a+p+k f+++vd ++
  CCG92942.1 127 LGYTNIYSPIEGKITARSIEEGEYVSEGQYLLSIISGNHYWIIGNFKENQLENIHPGQQAKVRIDAYPKKWFRARVDSVQ 206
                 66789************************************************************************986 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.1   8.5e-15   2.5e-11       2      47 ..      35      80 ..      34      83 .. 0.96
   2 !   15.9   0.0   2.9e-06    0.0085       3      33 ..     130     160 ..     123     163 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 8.5e-15
  Biotin_lipoyl_2  2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaea 47
                     vv Ia++vsG +++l+ +d+ +Vk+G +L+ +Dsr++ +++a a a
       CCG92942.1 35 VVRIASKVSGYIETLLAQDNWEVKKGELLVKIDSRDYMARVAVADA 80
                     89***************************************99976 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2.9e-06
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGdvLael 33 
                      ++I +p+ G++++  +++G +V +G+ L+ +
       CCG92942.1 130 TNIYSPIEGKITARSIEEGEYVSEGQYLLSI 160
                      5799************************987 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.081   2.4e+02       2      45 ..      38      80 ..      37      95 .. 0.84
   2 !   52.5   0.0   2.2e-17   6.6e-14       2      96 ..     132     241 ..     131     251 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.081
      HlyD_3  2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaa 45
                + + v+G +  l ++ +  v +g+ l++i   ++++++++v++a
  CCG92942.1 38 IASKVSGYIETLLAQDNWEVKKGELLVKID-SRDYMARVAVADA 80
                678899999999997777799*99999997.7999999999865 PP

  == domain 2  score: 52.5 bits;  conditional E-value: 2.2e-17
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvd................akt 84 
                 +++p+ G++++ ++eege+v++g+ ll+ii  +++++     + +l  i+ +gq++++++d +++++ +++++++ + ++                ++t
  CCG92942.1 132 IYSPIEGKITARSIEEGEYVSEGQYLLSIISGNHYWIIGNFKENQLENIH-PGQQAKVRIDAYPKKWFRARVDSVQRGTKgafspypledlslnyvKTT 229
                 89***********************************************8.************************997765666666777777666778 PP

      HlyD_3  85 gaykvevslenp 96 
                 ++++v++ ++++
  CCG92942.1 230 QRIPVKILFDDS 241
                 888888877776 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0     1e-09     3e-06      12      62 ..      93     242 ..       8     258 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1e-09
                 E................................................................................EEEEEEEECEEEEEEEGC CS
                 x................................................................................xxxxxxxxxxxxxxxxxx RF
        HlyD  12 a................................................................................etdldqvrvgqpvevrfd 30 
                                                                                                  e++l ++++gq ++vr d
  CCG92942.1  93 RqlsvinalsafnydlalatnvmtrsilrleslslgytniyspiegkitarsieegeyvsegqyllsiisgnhywiignfkENQLENIHPGQQAKVRID 191
                 055555555555567777777777788888888888888888888888888888888888888888888888899999999****************** PP

                 GEEECTTTSEEEEEEECTSB......................EEEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxxxx RF
        HlyD  31 AfpqtktgkftgvVvgispd......................rvpvrvvvekaq 62 
                 A+p++    f + V++++++                      r+pv++  +++q
  CCG92942.1 192 AYPKK---WFRARVDSVQRGtkgafspypledlslnyvkttqRIPVKILFDDSQ 242
                 *****...9*************************************99988776 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   3.2e-05     0.097      43      73 .]      36      66 ..      34      66 .. 0.94
   2 !    6.3   0.0    0.0028       8.3      46      72 ..     133     159 ..     130     161 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.2e-05
                   EEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 43 meieapkaGvvkeilvkeGdtvevgdllaki 73
                   + i ++++G+++ +l++++ +v+ g+ll+ki
     CCG92942.1 36 VRIASKVSGYIETLLAQDNWEVKKGELLVKI 66
                   6799*************************98 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0028
                    EBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl  46 eapkaGvvkeilvkeGdtvevgdllak 72 
                     +p +G+++   ++eG+ v++g+ l+ 
     CCG92942.1 133 YSPIEGKITARSIEEGEYVSEGQYLLS 159
                    455556666666666666666655544 PP

>> HlyD_2  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.14   4.3e+02      55      97 ..      26      69 ..      22      94 .. 0.72
   2 ?   12.0   0.0   2.1e-05     0.064     245     302 ..     143     203 ..     132     213 .. 0.82
   3 ?   -2.0   5.2      0.38   1.1e+03       7      40 ..     258     293 ..     253     298 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.14
      HlyD_2 55 kkkgliirdekviksnaegivkyfvkeGd.kvkkgkkvaeiqks 97
                +k+++i      i+s+  g+++ ++ +++  vkkg+ +++i + 
  CCG92942.1 26 TKDAYIAAHVVRIASKVSGYIETLLAQDNwEVKKGELLVKIDSR 69
                56677777777777788888877766655367888877777654 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 2.1e-05
      HlyD_2 245 ieldkkkkvnkGdpifkivnnqkwYlvtlvekeevkslkegkkvkvkvddee...inakvy 302
                 +++++++ v +G+ +++i+  + ++++   ++++++++  g++ kv++d      + a+v 
  CCG92942.1 143 RSIEEGEYVSEGQYLLSIISGNHYWIIGNFKENQLENIHPGQQAKVRIDAYPkkwFRARVD 203
                 57888888*************************************9998643334666665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.38
      HlyD_2   7 kikrkrfnvlill..vviiliYivvnlvisiiksti 40 
                 ++k k  + +++l  + +++  +v+ +++ iik++i
  CCG92942.1 258 QVKTKDCKAVYILsvIYSFITLVVFIILFKIIKKNI 293
                 467788899999965566666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 1967.45
//
Query:       CCG92943.1  [L=496]
Description: Preprotein translocase subunit SecY [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-103  346.8  20.2   1.6e-103  346.2  20.2    1.3  1  SecY      SecY translocase
     0.0061   16.6   0.2     0.0061   16.6   0.2    3.7  5  DUF624    Protein of unknown function, DUF624
  ------ inclusion threshold ------
      0.015   15.2   1.9       0.43   10.5   0.2    3.1  3  DUF1467   Protein of unknown function (DUF1467)


Domain annotation for each model (and alignments):
>> SecY  SecY translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.2  20.2  2.7e-107  1.6e-103       2     306 .]      77     435 ..      76     435 .. 0.92

  Alignments for each domain:
  == domain 1  score: 346.2 bits;  conditional E-value: 2.7e-107
                 TTSSTCHHHHHHHHHHHHHHHHSSSSSSTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC............................HH.HHHH CS
        SecY   2 ifaLGImPyitasIilqLltvvipkleelkkegeegrkkinqitryltvvlalvqalgialslg............................lallliv 72 
                 if+L++mPyi+asI++qLlt+v+p+l +l++e e gr+k++q+ r+ltv+l+l+q++ +a++++                             + l+++
  CCG92943.1  77 IFSLSVMPYISASIMMQLLTTVVPTLGKLARE-EGGRQKLTQYSRLLTVLLCLFQGYLLAIGFEnpesipllhgihgiieklgsplvpepgwSFRLITM 174
                 9******************999********65.77***********************9999889**************************9778**** PP

                 HHHHHHHHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHCCHSS-.HHHH....SS.....THHHHHHHHHHHHHHHHHCHHHHBEEEECBBBSTT.... CS
        SecY  73 lqltagtvllmwLgEqitekGiGnGisllifagivarlpkalsg.liel....ale...gilallllllvtllvillvvyveeaerripvqyakr..gr 161
                 ++lt+gt+llmwLgEqi++kGiGnG+sl+i++gi+arlp+ l + + +l    +     + + ++llll+++ vi+++v +++a r+i+++yak+  g+
  CCG92943.1 175 ISLTTGTLLLMWLGEQISDKGIGNGVSLIITIGILARLPAGLVQgWSKLispsS-ItasSPFLIALLLLFLFGVIAATVAMTQAMRKITIHYAKQvrGN 272
                 ***************************************777774655544441.156677788899999999********************988888 PP

                 ....S.S-EEEEETTCCCSCHHHHHHHHHHHHHCCCCS...........TCCCSTHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHCCHHTBSSSCTTT CS
        SecY 162 k..ggqssylPlklnyagviPiIfassllalpstiaqfl..........lallspsvlyvvlyvlliifFayfyteitfnpkevaenlkksggfipgir 248
                 +  ggq+s+lPlk+nyagv+PiIfa+++l++psti+ f+          ++ ls   ly++l v+li+fF+yf+++++fnp ++a++lkk+ggfipgir
  CCG92943.1 273 RvyGGQTSFLPLKVNYAGVMPIIFAQAILLFPSTIIGFVvpnsavaariANSLSAGGLYYALSVVLIFFFSYFWVATQFNPVQIADDLKKHGGFIPGIR 371
                 899**********************************999988877665444446678***************************************** PP

                 TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT.....S..TT.TTHHHHHHHHHHHHHHH CS
        SecY 249 pgketakyLekvlsritliGalflaliavlpdllga.....sl.igafggtslLivVgvaletv 306
                 pg +t+++L++ ++r+tl Ga+fl+++avlp+++++      + +++fggtslLivVgv+l+t+
  CCG92943.1 372 PGAPTSEFLDYSMTRLTLAGAIFLSILAVLPMVVQNllgipAItAQFFGGTSLLIVVGVILDTM 435
                 *************************************9985224589***************97 PP

>> DUF624  Protein of unknown function, DUF624
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.42   2.5e+03       9      25 ..      18      34 ..      17      35 .. 0.87
   2 !   16.6   0.2     1e-06    0.0061      10      39 ..     236     265 ..     194     271 .. 0.90
   3 ?   -2.8   0.1       1.2   6.9e+03      59      73 ..     387     401 ..     385     404 .. 0.79
   4 ?   -3.8   0.2       2.4   1.4e+04      16      19 ..     411     414 ..     395     431 .. 0.61
   5 ?   -2.8   0.8       1.2   7.1e+03       6      19 ..     474     486 ..     472     492 .. 0.54

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.42
      DUF624  9 llftllglvvfglfPAt 25
                +lftl +++++ l+ A+
  CCG92943.1 18 ILFTLGVIIIIRLGSAI 34
                68999999999999886 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1e-06
      DUF624  10 lftllglvvfglfPAtaAlfavvrkwirke 39 
                 l  ll+l++fg+ +At A+++ +rk+ +  
  CCG92943.1 236 LIALLLLFLFGVIAATVAMTQAMRKITIHY 265
                 4569*********************98765 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.2
      DUF624  59 snllglillliglil 73 
                  +l+g i+l i+++l
  CCG92943.1 387 LTLAGAIFLSILAVL 401
                 578899999998887 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 2.4
      DUF624  16 lvvf 19 
                 ++ +
  CCG92943.1 411 IPAI 414
                 4333 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 1.2
      DUF624   6 llwllftllglvvf 19 
                 l+w+ +t++g++v+
  CCG92943.1 474 LVWI-YTFIGILVI 486
                 5666.444444443 PP

>> DUF1467  Protein of unknown function (DUF1467)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         2   1.2e+04      43      63 ..     158     178 ..     156     187 .. 0.68
   2 ?   10.5   0.2   7.2e-05      0.43       6      70 ..     336     400 ..     333     413 .. 0.72
   3 ?    2.6   0.0     0.021   1.3e+02      36      70 ..     454     491 ..     444     496 .] 0.75

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2
     DUF1467  43 sAParprllrkvlitTivaav 63 
                 ++P  p+++  + + T++++ 
  CCG92943.1 158 GSPLVPEPGWSFRLITMISLT 178
                 667777777778888888765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 7.2e-05
     DUF1467   6 alaiYfv..iWwvvlFavLPfgvrtqdeegevkvpGtdasAParprllrkvlitTivaavvfalvll 70 
                 ++ i+f   +W+ + F   P+++     ++   +pG  ++AP+   l   + + T++ a+   ++++
  CCG92943.1 336 VVLIFFFsyFWVATQFN--PVQIADDLKKHGGFIPGIRPGAPTSEFLDYSMTRLTLAGAIFLSILAV 400
                 55555541166666666..555555555455558**********************99988777665 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.021
     DUF1467  36 kvpGtdasAParprllrk...vlitTivaavvfalvll 70 
                 k+ G+ a++P+ +++ +    v+i T + ++v+a +++
  CCG92943.1 454 KKVGKVAGSPVVANVTKEgtlVWIYTFIGILVIAGITV 491
                 578999****9999877533377888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3247.06
//
Query:       CCG92944.1  [L=147]
Description: 50S ribosomal protein L15 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-37  127.1   4.7    8.2e-37  126.7   4.7    1.2  1  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27


Domain annotation for each model (and alignments):
>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   4.7   4.6e-41   8.2e-37       1     127 [.      27     144 ..      27     145 .. 0.94

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 4.6e-41
                     GGGGTSSTTTTTTTTT-S--......S--.........---GGG..---EEEEHHHHHHTTTTGTTS------EEEGGGTTTTSSS.....SEEE CS
  Ribosomal_L27A   1 kGktgGrGhkGqkkrsgvkkkpgfeGGqmplyrrlpkrGfknskfkkeykvvnlkdLdelideerleladeaeeidleelaeaglikk.kdgvKv 94 
                     +Gkt+G+GhkGqk+rsg++ + gfeGGqmpl+rr+pkrGf+n++f+ +y++vnl+ ++             +e+id + l++ gl+k+  dg+K+
      CCG92944.1  27 HGKTSGKGHKGQKARSGGSIRIGFEGGQMPLIRRIPKRGFNNKRFHIQYAPVNLSSIEG-----IT-----EEVIDENLLRKLGLVKGrVDGIKI 111
                     6*********************************************************3.....22.....368999999999****988999** PP

                     E--S---.--EEEESEE-HHHHHHHHHTT-EEE CS
  Ribosomal_L27A  95 lgkgeltkklkvkaskfSkkAkekIeaaGGkve 127
                     lgkge++++ ++k++++S +AkekIe++GGk+e
      CCG92944.1 112 LGKGEISRAYIFKVHAVSTSAKEKIEKVGGKIE 144
                     *******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 996.91
//
Query:       CCG92945.1  [L=212]
Description: 30S ribosomal protein S5 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-31  106.2   0.1    7.5e-31  105.4   0.1    1.4  1  Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
    7.6e-25   86.7   2.8    7.6e-25   86.7   2.8    1.6  2  Ribosomal_S5    Ribosomal protein S5, N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.1   8.3e-35   7.5e-31       2      72 .]     132     202 ..     131     202 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 8.3e-35
                     EEETTEEEEEEE--TT--EES-HHHHHHHHHHT--SEE---BS-SSHHHHHHHHHHHHHHTTTT-.-GGGG CS
  Ribosomal_S5_C   2 gkfgavkvllkpaprGtGiiaggavravlelaGikDvlakslgsrnpinvvkAtfeALkklrspeevaalR 72 
                     g+f++++vllkpa++GtGiiag +vr++le+aGikDvl+kslgs+np+nv+kAtf+AL +l+s +ev ++R
      CCG92945.1 132 GEFSGGRVLLKPASPGTGIIAGVTVRSILEAAGIKDVLTKSLGSKNPYNVAKATFKALAQLKSRDEVFQRR 202
                     89****************************************************************98877 PP

>> Ribosomal_S5  Ribosomal protein S5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   2.8   8.5e-29   7.6e-25       1      64 [.      56     119 ..      56     120 .. 0.96
   2 ?   -2.8   0.0      0.73   6.5e+03      45      54 ..     180     189 ..     173     193 .. 0.65

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 8.5e-29
                   XEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTEEEEEEEEESSHHHHHHHHHHHHHHTEEE- CS
  Ribosomal_S5   1 lkekvlkikrvqkvtkgGrrtsfsalvvvGdgnGlvGlGvgkakevatAirkAiekAkknlvpv 64 
                   l ++v+ ++r++kv+kgGrr sf alvvvGd+ G++GlG+gka+ev++A++kA+e+A+kn+ ++
    CCG92945.1  56 LMDRVIYVNRCAKVVKGGRRYSFGALVVVGDRAGQIGLGFGKANEVTDAVKKATENARKNMEQI 119
                   5699*********************************************************876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.73
                   SHHHHHHHHH CS
  Ribosomal_S5  45 evatAirkAi 54 
                   +va+A  kA 
    CCG92945.1 180 NVAKATFKAL 189
                   5666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       978  (0.0545485); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1459.23
//
Query:       CCG92946.1  [L=117]
Description: 50S ribosomal protein L18 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-44  150.1   1.4    3.5e-44  149.9   1.4    1.0  1  Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. a
  ------ inclusion threshold ------
       0.04   13.0   0.0      0.044   12.8   0.0    1.0  1  LigB            Catalytic LigB subunit of aromatic ring-openi


Domain annotation for each model (and alignments):
>> Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   1.4   3.9e-48   3.5e-44       2     116 .]       4     117 .]       3     117 .] 0.98

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 3.9e-48
                     -CCHHHCHHHHHHTTT--TTSSS-EEEEEE-SS-EEEEEE-TTT--EEEEECS-SCCCTS-SSSCHHHHHHHHHHHHHHHCHHCHTC-EE--TTS CS
  Ribosomal_L18p   2 kkkearkrRhkRirkklsgtaerprlvvfrsnrhiyaQviddvkgktlasastlekelklkstknkeaakkvgeliAerakekgiekvvfDrggy 96 
                     ++ eark Rh+Rirkk++gt++rprl+v+ sn+hiy+Q+++d +gktl+sast ek++  + + n++ a k+ge+iA ra+ek+i+kvvfDrgg+
      CCG92946.1   4 NRLEARKIRHQRIRKKVFGTSQRPRLSVHFSNKHIYIQLVNDEEGKTLVSASTREKAFS-ELKPNINGAIKLGEAIAIRAQEKKISKVVFDRGGF 97 
                     67899*****************************************************9.9999******************************* PP

                     SS-CHHHHHHHHHHCTSSB- CS
  Ribosomal_L18p  97 kYhGrvaalAdaaReaGlkf 116
                     +YhG+v+alAd+aRe+Gl+f
      CCG92946.1  98 LYHGKVKALADSAREKGLEF 117
                     ******************98 PP

>> LigB  Catalytic LigB subunit of aromatic ring-opening dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     5e-06     0.044      34     119 ..      16     101 ..       2     105 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5e-06
        LigB  34 ireriaek..sPdtiivvsphhltdvnpvfvlgvaeefeaiddfg..kflprleyelkgnpeLaekiaealkksgidlavesnsmklDHG 119
                 ir+++     +P++ + +s+ h      + +++ +e ++ ++ +   k+  +l+++++g+ +L+e+ia  +++++i  +v +    l HG
  CCG92946.1  16 IRKKVFGTsqRPRLSVHFSNKHIY----IQLVNDEEGKTLVSASTreKAFSELKPNINGAIKLGEAIAIRAQEKKISKVVFDRGGFLYHG 101
                 444444335588888888888877....455666666777776667799999************************98886666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 865.62
//
Query:       CCG92947.1  [L=179]
Description: 50S ribosomal protein L6 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-35  119.2   0.5    3.1e-18   66.2   0.1    2.1  2  Ribosomal_L6  Ribosomal protein L6
  ------ inclusion threshold ------
      0.047   13.5   0.7      0.086   12.7   0.1    1.6  2  PulG          Type II secretory pathway pseudopilin


Domain annotation for each model (and alignments):
>> Ribosomal_L6  Ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   1.2e-17     1e-13       2      76 .]      12      82 ..      11      82 .. 0.96
   2 !   66.2   0.1   3.5e-22   3.1e-18       2      75 ..      91     164 ..      90     165 .. 0.98

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 1.2e-17
                  STTEEEEEETTTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHHHHHHHHHHHHHHHHHHHHTC CS
  Ribosomal_L6  2 PvgvrvsikggqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekvAligtvrslinnmikGVteg 76
                  P+  +v+i++ ++v++ G+kg l+ ++p+ ++v   + +n+++v+ vs+++++k+ ++g+ rsl  n  +GV+eg
    CCG92947.1 12 PAELQVTIDK-NVVTFEGKKGKLSHPLPDFLKVH--KRDNTLVVENVSESREAKA-MHGLHRSLLYNALVGVQEG 82
                  78889****5.***********************..88*****************.*****************98 PP

  == domain 2  score: 66.2 bits;  conditional E-value: 3.5e-22
                   STTEEEEEETTTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHH....HHHHHHHHHHHHHHHHHHT CS
  Ribosomal_L6   2 PvgvrvsikggqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekv....AligtvrslinnmikGVte 75 
                   ++g ++s++g +lv+ lG+++++ +eipegvtv+v+     +t+ +v+gidk  v    A+i+ + +++++++kG+++
    CCG92947.1  91 GIGFKASVEGRKLVMQLGFSHPVVYEIPEGVTVKVQ----DNTKLTVEGIDKCLVgavaADIRGFYPPEPYKGKGIRY 164
                   89**********************************....99**********************************98 PP

>> PulG  Type II secretory pathway pseudopilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   9.5e-06     0.086      17      62 ..      49      95 ..      48     106 .. 0.88
   2 ?   -2.3   0.1      0.46   4.1e+03      58      68 ..     120     130 ..     119     137 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.5e-06
        PulG 17 slilsqlkqsrkktaeelkkqEvlnvalmAvqtk.qdeLslNGvevt 62
                +l+++++++sr+++a++  ++  l  al  vq + q++L++NG+  +
  CCG92947.1 49 TLVVENVSESREAKAMHGLHRSLLYNALVGVQEGfQKKLEINGIGFK 95
                79*****************************987699******9765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.46
        PulG  58 Gvevtikktqe 68 
                 Gv v+++ + +
  CCG92947.1 120 GVTVKVQDNTK 130
                 78888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1495.81
//
Query:       CCG92948.1  [L=128]
Description: 30S ribosomal protein S8 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-40  137.9   0.0    1.8e-40  137.8   0.0    1.0  1  Ribosomal_S8  Ribosomal protein S8
  ------ inclusion threshold ------
      0.039   14.0   0.0      0.063   13.3   0.0    1.3  1  Band_7_C      C-terminal region of band_7
      0.099   12.6   0.0       0.17   11.8   0.0    1.4  1  STI1          STI1 domain


Domain annotation for each model (and alignments):
>> Ribosomal_S8  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.8   0.0   3.1e-44   1.8e-40       1     127 []       4     128 .]       4     128 .] 0.98

  Alignments for each domain:
  == domain 1  score: 137.8 bits;  conditional E-value: 3.1e-44
                   -HHHHHHHHHHHHHHTT-SEEEEE--HHHHHHHHHHHHCTSEEEEEEECCCCCCEEEEE-BSSS-SBSSSEEEE-SBTTC--EE-CCC---CGGGTS CS
  Ribosomal_S8   1 DpiadmltrirNaekakkeevevpasklkeeilkvLkeeGyikdfeveeekkkkikielkynkkkksvikklkrvskpgrrvYakvkelpkvlnglG 97 
                   Dpiad++++++Na+ akk+e++vp+s++ke+i+kv+ +eGy+++fe   + k+++ ++l +++     i+k+kr+skpg+r Y++ ke+p++l+glG
    CCG92948.1   4 DPIADFCSALQNAAYAKKRELTVPYSRIKEQIAKVMLDEGYLEKFEKIASGKNIFVLKLTIKD--PALITKIKRISKPGLRQYVGFKEIPNILRGLG 98 
                   9**********************************************98889999******99..89****************************** PP

                   EEEEEETTEEEEHHHHHHCT--EEEEEEEE CS
  Ribosomal_S8  98 iaivsTskGvmtdkeArkkkvGGevlayvw 127
                   i+++sTskG+m+ ++A+k+++GGe+l +++
    CCG92948.1  99 ICVLSTSKGIMAGHKAKKMRMGGELLLSIY 128
                   ***************************998 PP

>> Band_7_C  C-terminal region of band_7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.1e-05     0.063      22      48 ..      42      68 ..      35      76 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
    Band_7_C 22 eqYveaFgkLAkesntvilPanvgdvs 48
                e Y e+F+k+A  +n+ +l   + d++
  CCG92948.1 42 EGYLEKFEKIASGKNIFVLKLTIKDPA 68
                78*****************99999987 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.9e-05      0.17      10      51 ..      33      74 ..      28      77 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.9e-05
        STI1 10 anPetrellsDPefvakleeiqsNPqalqqym..sDprimtvls 51
                +  ++++ + D  +  k+e+i+s+ + +  ++  +Dp   t++ 
  CCG92948.1 33 E--QIAKVMLDEGYLEKFEKIASGKNIFVLKLtiKDPALITKIK 74
                4..899********************88777777*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 953.61
//
Query:       CCG92949.1  [L=193]
Description: 50S ribosomal protein L5 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-35  120.1   0.0    6.1e-35  119.3   0.0    1.4  1  Ribosomal_L5_C  ribosomal L5P family C-terminus
    3.3e-25   88.2   0.4    5.6e-25   87.4   0.4    1.4  1  Ribosomal_L5    Ribosomal protein L5


Domain annotation for each model (and alignments):
>> Ribosomal_L5_C  ribosomal L5P family C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.0   6.8e-39   6.1e-35       1      94 []      88     181 ..      88     181 .. 0.99

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 6.8e-39
  Ribosomal_L5_C   1 piGvkvtLrgekmyefldkllevvlprlrdFkGiskssfdgrGnvsfGikeqiifpeieydkdkgifGmditivttaktdeearallkelgipf 94 
                     +iG++vtLrg++myefl++++ ++lpr+rdF+G++++sfd++Gn+++Gik+++ifpe++++++k+  G+d tivttakt++ea  ll+++g+pf
      CCG92949.1  88 EIGCMVTLRGARMYEFLERFVWAALPRVRDFRGLPTRSFDSQGNYTIGIKDHTIFPEVDIENIKRNLGFDLTIVTTAKTKKEAIDLLSAMGFPF 181
                     59*******************************************************************************************9 PP

>> Ribosomal_L5  Ribosomal protein L5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.4   6.2e-29   5.6e-25       1      57 []      28      84 ..      28      84 .. 0.99

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 6.2e-29
                  SCTTS-EEEEEEEEEE-SSSSSCHHHHHCCHHHHCCCHSS--EECC--TTCTTTCSC CS
  Ribosomal_L5  1 NvMqvPrleKivinmgvGeagedkkllekaakeLaeItGQkPvvtkakksianFkiR 57
                  N+++vP++ Ki+in++vG +g+ k +le+a+keLa ItGQ+Pv t+akksi+nFk+R
    CCG92949.1 28 NIHEVPKIVKITINCCVGSSGDIKVALEEAVKELALITGQQPVKTRAKKSISNFKLR 84
                  99******************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1406.21
//
Query:       CCG92950.1  [L=104]
Description: 50S ribosomal protein L24 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-13   50.2   0.2    2.6e-13   50.2   0.2    1.7  2  ribosomal_L24  Ribosomal proteins 50S L24/mitochondrial 39S L
    4.4e-08   32.8   1.9    6.8e-08   32.2   1.9    1.3  1  KOW            KOW motif


Domain annotation for each model (and alignments):
>> ribosomal_L24  Ribosomal proteins 50S L24/mitochondrial 39S L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.54   4.9e+03      52      54 ..      33      35 ..      11      49 .. 0.57
   2 !   50.2   0.2   2.9e-17   2.6e-13       2      36 ..      54      93 ..      53     103 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.54
  ribosomal_L24 52 gkk 54
                   gkk
     CCG92950.1 33 GKK 35
                   332 PP

  == domain 2  score: 50.2 bits;  conditional E-value: 2.9e-17
  ribosomal_L24  2 nvvkkhvkpsqqneqGgiiekEapIhvSnVmlvd.....p 36
                    + kk v+p+q+n+qGgiiekEapI +SnVm++      +
     CCG92950.1 54 RMMKKAVRPTQENPQGGIIEKEAPISISNVMIFSrweerQ 93
                   599*****************************97444332 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   1.9   7.6e-12   6.8e-08       1      32 []      20      51 ..      20      51 .. 0.96

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 7.6e-12
                TTSEEEESSSTTTTCEEEEEEEETTTTEEEEE CS
         KOW  1 pGdhVkVvsGphkGktGkVvkvdqhkvrVfvd 32
                +Gd+V+V+sG  +Gk+GkV++v ++k +V+v+
  CCG92950.1 20 RGDEVIVISGSERGKKGKVLQVLREKSKVIVE 51
                6*************************999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 817.82
//
Query:       CCG92951.1  [L=121]
Description: 50S ribosomal protein L14 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-49  167.4   1.1    1.3e-49  167.3   1.1    1.0  1  Ribosomal_L14  Ribosomal protein L14p/L23e
  ------ inclusion threshold ------
      0.028   14.3   0.2       0.72    9.8   0.1    2.2  2  LpxI_N         LpxI N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L14  Ribosomal protein L14p/L23e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.3   1.1   1.5e-53   1.3e-49       1     122 []       1     121 []       1     121 [] 0.99

  Alignments for each domain:
  == domain 1  score: 167.3 bits;  conditional E-value: 1.5e-53
                    ..CSS-EEE--SSSSBSEEEEEEETT-.---EE-SSSEEEEEESSS-T...TTSSCEEEEEEEE-SS-EE-TTS-EEEESS-EEEEB-TTS-BSS- CS
  Ribosomal_L14   1 miqlktrlkvaDNsgakevecikvlggkkrkaasvGdiivvsvkkakpkgkvkkgdvvkavvvrtkkevrrkdGsvirfddnaaVllnkkgeplGt 96 
                    m+q ++ l+vaDN+gak++++i v+g k +  a+vGdii++svk+a+p+g+vkkg+vv+avvvrtk+++rr+dGs+++fd+na+V+++k+++p+Gt
     CCG92951.1   1 MLQIRSWLEVADNTGAKKATMIGVVGRK-TLIARVGDIITASVKDAIPNGSVKKGEVVRAVVVRTKSPIRRSDGSYLKFDNNAIVIIDKESNPKGT 95 
                    99************************98.89***************************************************************** PP

                    .B-SBEEHHHHHH.-HHHHHTBSBE. CS
  Ribosomal_L14  97 rifgpvarelrekkflkivslApevl 122
                    rifgpvarelrek+f ki+slApev+
     CCG92951.1  96 RIFGPVARELREKNFIKILSLAPEVV 121
                    ************************97 PP

>> LpxI_N  LpxI N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1     8e-05      0.72      52      92 ..       2      42 ..       1      66 [. 0.81
   2 ?    3.5   0.0    0.0069        62      76     117 ..      69     110 ..      39     118 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 8e-05
      LpxI_N 52 gqlgklikaLkregvtevvmaGkvekpklldlrpDlralkl 92
                 q+ ++++   + g+++++m+G v ++ l     D+ ++++
  CCG92951.1  2 LQIRSWLEVADNTGAKKATMIGVVGRKTLIARVGDIITASV 42
                688899999999************99999988778777665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0069
      LpxI_N  76 ekpklldlrpDlralkllaklkdrgddalLravveelekeGi 117
                 ++++   l++D +a+ ++ k  + +  ++++ v++el ++ +
  CCG92951.1  69 RRSDGSYLKFDNNAIVIIDKESNPKGTRIFGPVARELREKNF 110
                 333333556799999999998899999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 872.88
//
Query:       CCG92952.1  [L=97]
Description: 30S ribosomal protein S17 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-29   99.4   3.2    9.1e-29   99.4   3.2    1.4  2  Ribosomal_S17    Ribosomal protein S17
  ------ inclusion threshold ------
      0.036   13.8   0.0       0.92    9.2   0.0    2.0  2  Exotox-A_cataly  Exotoxin A catalytic


Domain annotation for each model (and alignments):
>> Ribosomal_S17  Ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.1   9.7e+03       3       7 ..      15      19 ..       9      22 .. 0.53
   2 !   99.4   3.2     1e-32   9.1e-29       1      68 []      26      93 ..      26      93 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.1
                   EEE-- CS
  Ribosomal_S17  3 Vvsdk 7 
                   Vvs++
     CCG92952.1 15 VVSKR 19
                   33332 PP

  == domain 2  score: 99.4 bits;  conditional E-value: 1e-32
                   EEEEE--STTEEEEEEEEEEEETTTTEEEEEEEEEEEE-TTTS--TT-EEEEEEECECSSSEEEEEEE CS
  Ribosomal_S17  1 GvVvsdkmdkTvvVrverlvkhpkykkyvkrrkkylahdennsvkvGDiVrieecrPlSktkrfvvve 68
                   G+Vvs+km kT+vV v+r + hp+ykk+v  rkk+ ahde+ ++k+GD+Vri+ecrPlS+ kr++vve
     CCG92952.1 26 GTVVSTKMAKTAVVLVSRHKSHPLYKKVVLVRKKFYAHDEEGIAKEGDKVRIQECRPLSRLKRWKVVE 93
                   99****************************************************************96 PP

>> Exotox-A_cataly  Exotoxin A catalytic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0001      0.92     111     150 ..       6      45 ..       1      55 [. 0.81
   2 ?    3.1   0.0     0.008        72      60      77 ..      61      78 ..      56      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0001
                      S-S...S-EEEEESSTTSSEEEEE-HHHHTTSEEEE-SS- CS
  Exotox-A_cataly 111 gedrsyleairGpeedkertetiLswklaeravaiPstik 150
                       ++ +  e +  +  +ke+  t++s+k+a+ av++ s  k
       CCG92952.1   6 ELKTVANEKVVSKRKPKEKIGTVVSTKMAKTAVVLVSRHK 45 
                      555566678888999*******************998765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.008
                     TSB-SST-T-BEEEEEEE CS
  Exotox-A_cataly 60 yaadeesgakgGqllrvy 77
                     ya dee+ ak+G  +r+ 
       CCG92952.1 61 YAHDEEGIAKEGDKVRIQ 78
                     9**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 713.83
//
Query:       CCG92953.1  [L=70]
Description: 50S ribosomal protein L29 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-19   70.0   7.9    1.4e-19   69.8   7.9    1.1  1  Ribosomal_L29  Ribosomal L29 protein
  ------ inclusion threshold ------
      0.039   13.9   0.4      0.045   13.7   0.4    1.2  1  Paz_1          PAZ domain


Domain annotation for each model (and alignments):
>> Ribosomal_L29  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   7.9   1.5e-23   1.4e-19       2      57 .]       9      64 ..       8      64 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 1.5e-23
                   HHHHS-HHHHHHHHHHHHHHHHHHHHHHHHTSSS-CHHHHHHHHHHHHHHHHHHHH CS
  Ribosomal_L29  2 elrelsdeeLkeklkelkkeLfnLrfqkatgqlenpsrirkvRkdIARikTvlrer 57
                   elr+l ++eL  k +e ++eLf+Lr+qk+t qle+psri++++k IARikTv +++
     CCG92953.1  9 ELRSLGKQELLVKEQECREELFRLRMQKSTAQLEKPSRIKELKKMIARIKTVSKQK 64
                   9***************************************************9997 PP

>> Paz_1  PAZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.4     5e-06     0.045      28      68 ..      14      54 ..       5      67 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5e-06
                EEEEEEEESGGSTTHHHHHHHHH-SSHHHHHHHHHHHHSHH CS
       Paz_1 28 grvqdvfkakekgeeffrlcmersthksskkaweellknre 68
                g+ + ++k +e  ee+frl m++st +  k +  + lk+  
  CCG92953.1 14 GKQELLVKEQECREELFRLRMQKSTAQLEKPSRIKELKKMI 54
                5666678999***************9998877666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1086  (0.0605723); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 551.74
//
Query:       CCG92954.1  [L=141]
Description: 50S ribosomal protein L16 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-46  157.5   0.2    1.8e-46  157.4   0.2    1.0  1  Ribosomal_L16  Ribosomal protein L16p/L10e
     0.0099   16.2   0.0      0.012   15.9   0.0    1.2  1  MID_pPIWI_RE   MID domain of pPIWI_RE


Domain annotation for each model (and alignments):
>> Ribosomal_L16  Ribosomal protein L16p/L10e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.4   0.2     2e-50   1.8e-46       1     132 []       5     133 ..       5     133 .. 0.98

  Alignments for each domain:
  == domain 1  score: 157.4 bits;  conditional E-value: 2e-50
                    HXSSXXBSSSXXSSTSXXXSXXXXXESXEEEEESSXEEEEHHHHHHHHHHHCTCCCCTSXCEEXXSXXXXEEEEE-SS-TTTSSSSXEEEEEEEEE CS
  Ribosomal_L16   1 pkrkkyrKsrkryirgvstkgtklefgdygLvalekgqltaealeaariainrylkkkrgkklwirvfphhpvtkkagedRmgkGkGkpegwvarv 96 
                    p+r+kyrKs++   +g +t+gt+l+fg+yg++ale++++t++++eaar+ai r++k  r+++lwir+fp++ vt ++ e+RmgkGkG+p  wva+v
     CCG92954.1   5 PRRVKYRKSQRGSRKGNATRGTELAFGSYGMQALERAWITNTQIEAARVAIMRNVK--RKGRLWIRIFPDKSVTARPPETRMGKGKGQPAFWVAVV 98 
                    689********8889*****************************************..************************************** PP

                    XSSCEEEEETTXXXSHHHHHHHHHHHHTSSSXEEEE CS
  Ribosomal_L16  97 kigqiifeikagvneeiakealrraasKlpiktkiv 132
                     +g+++fe+ +g+ e +akea+r+aa+Klpi+t+++
     CCG92954.1  99 LPGRVLFEL-DGLPESVAKEAMRLAAAKLPIHTRFI 133
                    *********.88**********************96 PP

>> MID_pPIWI_RE  MID domain of pPIWI_RE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-06     0.012      46     106 ..      64     135 ..      26     139 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-06
  MID_pPIWI_RE  46 r.........rvkereealaqllgraerptl.alveiegk..skakkrsdsDPKfalRlglakaGrlsQfilp 106
                   r         +v +r  + +  ++ +++p++ + v ++g+   + +  ++s+ K a+Rl++ak  +++ fi+ 
    CCG92954.1  64 RlwirifpdkSVTARPPETR-MGKGKGQPAFwVAVVLPGRvlFELDGLPESVAKEAMRLAAAKLPIHTRFITR 135
                   36666666666666655544.444566666669999***99999999************************54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1037.49
//
Query:       CCG92955.1  [L=215]
Description: 30S ribosomal protein S3 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-35  121.3   1.6    1.8e-35  121.3   1.6    1.7  2  Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
    1.5e-16   60.0   8.2    1.6e-16   59.9   6.6    1.9  2  KH_2            KH domain
     0.0012   18.9   0.1     0.0017   18.3   0.1    1.3  1  MRP-S24         Mitochondrial ribosome subunit S24
  ------ inclusion threshold ------
      0.019   14.8   1.2      0.051   13.5   0.1    2.1  2  KH_4            KH domain
       0.13   12.6   0.1       0.21   11.9   0.1    1.4  1  Tox-REase-7     Restriction endonuclease fold toxin 7


Domain annotation for each model (and alignments):
>> Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.4   8.7e+03       4      14 ..      46      56 ..      38      72 .. 0.49
   2 !  121.3   1.6   5.1e-39   1.8e-35       1      83 []     122     204 ..     122     204 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.4
                    HHHTT--HHHH CS
  Ribosomal_S3_C  4 qlekrvsfRra 14
                    +le  +  R +
      CCG92955.1 46 RLESAAVSRIV 56
                    33333333333 PP

  == domain 2  score: 121.3 bits;  conditional E-value: 5.1e-39
                     HHHHHHTT--HHHHHHHHHHHHHHCC-SEEEEEEEC-SS.TTT--EEEEEEC----TCHHHH-EEEEEEEEETTEEEEEEEEE CS
  Ribosomal_S3_C   1 iaeqlekrvsfRramkkairramkagakGikiqvsGrLggaeiarsekykeGrvplhtlradidyavaeaktkyGiiGvkVwI 83 
                     ia q+e+rv++Rra+k+ai+ +m+aga Gik++++GrLggaeiar e y+eG+vplh lradidy++aea t  G+iGvkVwI
      CCG92955.1 122 IALQIERRVAYRRAIKRAIQLTMDAGAMGIKVRCAGRLGGAEIARAERYHEGKVPLHSLRADIDYGFAEALTVAGKIGVKVWI 204
                     899*******************************************************************************9 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   6.6   4.4e-20   1.6e-16       2      78 .]      39     113 ..      38     113 .. 0.97
   2 ?   -1.6   0.0      0.67   2.4e+03       2      24 ..     184     208 ..     183     215 .] 0.64

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 4.4e-20
                 HHHHHHHHTECETEEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEEEEEEETTTGG CS
        KH_2   2 ipeslaveikkagvskveIertanrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVklnivkVkkpel 78 
                 i++++++++++a vs+++Ier+ nrv+i i++++pg+vIG++ ++++ki++e+  ++e  +g++V +++++Vk pel
  CCG92955.1  39 IRKFIKKRLESAAVSRIVIERAGNRVRINIHTARPGLVIGRKAAELDKIKEEIADIVE--KGREVLIDVKEVKHPEL 113
                 9********************99**********************************9..99************996 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.67
                 HHHHHHHHTECET..EEEEEEECCS CS
        KH_2   2 ipeslaveikkag..vskveIerta 24 
                 i++ +a+ ++ ag    kv I r++
  CCG92955.1 184 IDYGFAEALTVAGkiGVKVWICRKE 208
                 7788888899999555555555544 PP

>> MRP-S24  Mitochondrial ribosome subunit S24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   4.8e-07    0.0017      44      88 ..      25      69 ..      13     111 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.8e-07
     MRP-S24 44 geeraaettveDvfirkFitGtfhkllaseiiikRranviriaal 88
                +++   + ++eD  irkFi+   +++ +s i+i R  n +ri   
  CCG92955.1 25 DKKTFPRFIWEDYQIRKFIKKRLESAAVSRIVIERAGNRVRINIH 69
                556677889********************************9865 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.4e-05     0.051       4      47 ..      39      80 ..      37      88 .. 0.78
   2 ?   -0.4   0.1      0.31   1.1e+03       4      40 ..      87     122 ..      84     129 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
        KH_4  4 vedilkalvddpeevevteeeeeeeveielnvegedlGrvIGkr 47
                +++++k+ +++++  ++ +  e+ ++++++n+++   G+vIG++
  CCG92955.1 39 IRKFIKKRLESAAVSRIVI--ERAGNRVRINIHTARPGLVIGRK 80
                5667777665555445555..58899****************97 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.31
        KH_4   4 vedilkalvddpeevevteeeeeeeveielnvegedl 40 
                 +++ +  +v++  ev ++++ e ++ e+e ++  e++
  CCG92955.1  87 IKEEIADIVEKGREVLIDVK-EVKHPELEAQLIAENI 122
                 55566778888888888887.5566777766666665 PP

>> Tox-REase-7  Restriction endonuclease fold toxin 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   5.8e-05      0.21      24      61 ..      83     120 ..      59     143 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.8e-05
  Tox-REase-7  24 psgeqkerIPDeidkvnkqltEvKNvkeqsltkQlrde 61 
                  + ++ ke I D ++k+ + l  vK vk+ +l+ Ql +e
   CCG92955.1  83 ELDKIKEEIADIVEKGREVLIDVKEVKHPELEAQLIAE 120
                  56777999***************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1643.54
//
Query:       CCG92956.1  [L=112]
Description: 50S ribosomal protein L22 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-31  107.0   0.3    5.6e-31  106.8   0.3    1.0  1  Ribosomal_L22  Ribosomal protein L22p/L17e


Domain annotation for each model (and alignments):
>> Ribosomal_L22  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.3   3.1e-35   5.6e-31       4     102 ..       8     107 ..       5     108 .. 0.97

  Alignments for each domain:
  == domain 1  score: 106.8 bits;  conditional E-value: 3.1e-35
                    EEESS-HHHHHHHHHHHTTSBHHHHHHHHHT-SSTTHHHHHHHHHHHHHHHH..HT.-GGGEEEEEEEEEEEEEEEEEEEESTTEEEEEEEEEEEE CS
  Ribosomal_L22   4 snlrvsfkklrevarlIrgmkveeAlkyLkfskkkaakfvlklLknaeanaelkgl.dvdslvIeeiqvnkgpklkrrtyrArGrinpirkspchi 98 
                    + +r+s  k r var I+gm+++eA + L f +kkaa+++ k+L +a+anae++++  v++l+++ ++v++gp+++r++++ArG +++irk+++hi
     CCG92956.1   8 KMARISAFKSRDVARSIKGMDAKEAFNLLAFYPKKAARIIRKTLGSAIANAENNHNmRVQDLYVKGVFVDEGPTFRRYQPKARGSAGIIRKRTSHI 103
                    779*************************************************99999*************************************** PP

                    EEEE CS
  Ribosomal_L22  99 evvl 102
                    +v+l
     CCG92956.1 104 KVIL 107
                    ***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 825.97
//
Query:       CCG92957.1  [L=91]
Description: 30S ribosomal protein S19 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-37  126.4   0.4    3.4e-37  126.2   0.4    1.0  1  Ribosomal_S19  Ribosomal protein S19


Domain annotation for each model (and alignments):
>> Ribosomal_S19  Ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   0.4   1.9e-41   3.4e-37       1      81 []       3      81 ..       3      81 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.2 bits;  conditional E-value: 1.9e-41
                   .HHHSSTTCCCHHHHHHHHHHTS-----EEES-TT-B--GGGTT-EEEEE-SSSEEEEE--CCCTTSBCGGGT-SS----S CS
  Ribosomal_S19  1 rslkkgpfvqesllkkvrkakaekkkevikthsRdstIlPemvgltvgVynGktfvpveikeemvGhkLgEFspTrkpvkh 81
                   rslkkgpfv+++ll+k++k k  ++k++ikt+sR+s+I+P++vg+t+ V+nGktf  v+++e+mvGhkLgEF+pTr+++kh
     CCG92957.1  3 RSLKKGPFVDAHLLEKIEKLK--GAKKPIKTWSRRSMIIPDFVGHTFLVHNGKTFQSVYVTENMVGHKLGEFAPTRTFRKH 81
                   89******************9..589******************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 681.58
//
Query:       CCG92958.1  [L=283]
Description: 50S ribosomal protein L2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-53  180.9   0.2    1.7e-53  180.1   0.2    1.4  1  Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
    7.7e-33  112.3   1.7    1.8e-32  111.1   1.7    1.7  1  Ribosomal_L2    Ribosomal Proteins L2, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.1   0.2   1.9e-57   1.7e-53       2     126 .]     126     253 ..     125     253 .. 0.95

  Alignments for each domain:
  == domain 1  score: 180.1 bits;  conditional E-value: 1.9e-57
                     SSS-EBSSSS-TTB-BBSE-SSTTS--SSS-SSSB-EEBB-B.SSEEEEEETTS-EEEEETTSBEBES-BS-TTCTT----STTHHHHTTBS--- CS
  Ribosomal_L2_C   2 vGnvlplknipeGtivhnielkpgkggklarsaGtyaqvvakegkkvtvklpSgevrkvssecrAtiGvvsngehkekklgkAgrkrwlgrrpkv 96 
                     vGn+lplknip G  ++niel pgkgg+l+rsaG++aq+++ ++++++vklpSgevrk+ sec+AtiG+vsn++h +k+lgkAgr+rwlg+rp+v
      CCG92958.1 126 VGNALPLKNIPSGLPIYNIELVPGKGGQLVRSAGSSAQMMGLDKEYAIVKLPSGEVRKILSECYATIGQVSNPDHFNKSLGKAGRTRWLGWRPRV 220
                     8*****************************************99*************************************************** PP

                     -SSSS-TTTSSS--SSSS--S...SSSTEETTC CS
  Ribosomal_L2_C  97 rGvamnpvdHphGGGeGktks...rkapvspwg 126
                     rGvamnpvdHp GGG+Gk+k+    ++  spwg
      CCG92958.1 221 RGVAMNPVDHPNGGGQGKSKGgggWQQLESPWG 253
                     ******************887555556677776 PP

>> Ribosomal_L2  Ribosomal Proteins L2, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   1.7     2e-36   1.8e-32       1      77 []      42     118 ..      42     118 .. 0.99

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 2e-36
                   TB-TT--BSSTT--------EE-B--S---SS--EEEEEEE--TT-SS-EEEEEETTTEEEEEE--SS--SS-EE-- CS
  Ribosomal_L2   1 GrnnsgritvrhrggGhkkkyrlidfkrnkekvkgkVveieyDpgRsApiAlvkyedgekryiiapeglkvGdtvvs 77 
                   Grnn grit+rhrggGhk++yr+idfkrnk +v++ V++ieyDp R+A+iAl+kyed ekryiiap+ lkvG+ v+s
    CCG92958.1  42 GRNNYGRITARHRGGGHKQRYRIIDFKRNKFGVPAIVESIEYDPIRTARIALLKYEDQEKRYIIAPQELKVGSRVIS 118
                   9************************************************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1981.66
//
Query:       CCG92959.1  [L=94]
Description: 50S ribosomal protein L23 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-24   85.5   1.9    2.6e-24   85.4   1.9    1.0  1  Ribosomal_L23  Ribosomal protein L23
  ------ inclusion threshold ------
      0.037   14.1   0.0      0.051   13.6   0.0    1.2  1  Peptidase_C42  Beet yellows virus-type papain-like endopeptid


Domain annotation for each model (and alignments):
>> Ribosomal_L23  Ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   1.9   2.9e-28   2.6e-24       2      86 .]       7      92 ..       6      92 .. 0.94

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 2.9e-28
                   SEEEE--SHHHHHHHTTE.EEEEE-SS-THHHHHHHHHHHHT--EEEEEEEEE--EBE..SSSSSEEBE--EEEEEEEESSS-SSS. CS
  Ribosomal_L23  2 vilkPvitEkstklaeknkyvFeVakdanKleikkaveklFgVkVekVntlnvkgkkk..rvgrkvgrrksyKkaiVtLkegekidl 86
                   ++++  +tEk+t+l+e+nky F V+++a+K+++kk vek+Fg kV kVn + v+ k+k  r+gr  g+++++K+aiV+L +gekid+
     CCG92959.1  7 ILRQARVTEKATMLREQNKYIFDVDPRATKIDVKKSVEKAFGKKVLKVNLYTVQSKTKwnRIGR-PGKTPRIKRAIVQLYPGEKIDI 92
                   678899****************************************************987764.6*******************96 PP

>> Peptidase_C42  Beet yellows virus-type papain-like endopeptidase C42
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.6e-06     0.051      18      63 ..      17      62 ..       6      66 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.6e-06
  Peptidase_C42 18 afllrvfreadlalGafPtvaklkarlvreyGkealklglrGayts 63
                   a +lr  ++  +++    t+  +k+ +++ +Gk+ lk++l+  ++ 
     CCG92959.1 17 ATMLREQNKYIFDVDPRATKIDVKKSVEKAFGKKVLKVNLYTVQSK 62
                   5677777777889999999*********************988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 667.44
//
Query:       CCG92960.1  [L=218]
Description: 50S ribosomal protein L4 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-54  184.1   0.0    2.8e-54  183.7   0.0    1.0  1  Ribosomal_L4  Ribosomal protein L4/L1 family


Domain annotation for each model (and alignments):
>> Ribosomal_L4  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.7   0.0   1.5e-58   2.8e-54      11     191 ..      20     197 ..      15     198 .. 0.97

  Alignments for each domain:
  == domain 1  score: 183.7 bits;  conditional E-value: 1.5e-58
                   ---HHHHHHHHHHHHHSS-EE------TTTSS---S-SS-SSSSSS---S-TTSTTSTT---SS---S.EEHHHHHHHHHHHHHHHHHHHHHHHTT- CS
  Ribosomal_L4  11 pirrdlihravvaylanrrqgtastkarsevsgsgrklwkQKGtGrARvgsirspiargGgvahgpkperdystklnkKvrrlAlrsaLsakakqgl 107
                   + r +++h+a   ylan r+gt +tk++++v++sgrk+w+QKGtGrAR+g ++spi++gGgv++gp+p rd+s+k++kK ++lAl  aL+ak++++ 
    CCG92960.1  20 KERDQVLHDALCGYLANIRSGTRATKTKATVKASGRKPWRQKGTGRARAGYVSSPIWVGGGVVFGPQP-RDFSKKIPKKIKQLALIKALAAKINNES 115
                   5699***************************************************************9.**************************** PP

                   EEEES---.-SS--HHHHHHHHHHTT-TTSSEEEEESSSSCHHHHHHTT-TTEEEEESTT--CHHHHHSSEEEEEHHHHHHHHH CS
  Ribosomal_L4 108 llvvdnlepleesktkelvellkklglksksvLivvsekdenlvlaarnlpgvevieveslnvydllkadkvvitksaveklee 191
                   +l +d+ + l + ktk + +ll+ +   ++s L+++++ ++n++l+ rn+p+++++++ ++n++dl+  +k++i+k+a++ l e
    CCG92960.1 116 VLCIDHAN-LATIKTKHIFSLLDGWDG-KESCLLILKSPNRNVLLSGRNIPHLDIVTAWDVNALDLMSFKKIFIEKEAINILVE 197
                   *****999.*****************9.99*************************************************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1732.55
//
Query:       CCG92961.1  [L=216]
Description: 50S ribosomal protein L3 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-19   68.8   2.7    8.3e-17   61.2   0.8    2.2  2  Ribosomal_L3  Ribosomal protein L3


Domain annotation for each model (and alignments):
>> Ribosomal_L3  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.8   4.7e-21   8.3e-17     208     290 ..      99     183 ..      81     187 .. 0.88
   2 !    8.2   0.0   5.9e-05       1.1     322     351 ..     185     214 ..     182     216 .] 0.90

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 4.7e-21
                   CCCCS-TTSEEEEEEEE---EEE-HHHHCT----STTTSSS.SSS-S-SS-SS.SSS--TTS--SEEESCCEEEEEEEEEEEEET CS
  Ribosomal_L3 208 vaavFrqgeliDvigvtkGkGfeGvvkRWgvkklprkthrg.lRkvaaigawd.parVsstvaraGqkGyhhRtelnkkiyrigk 290
                     + F++ge +Dvig+tkGkGf+Gv+++ g+ ++p+ ++ + +R+ +aig    p+rV     ++G++G  + t  n+ +++i  
    CCG92961.1  99 SVSDFEEGEKVDVIGITKGKGFQGVIRKHGFAGQPASHGSKtHRRNGAIGERSfPGRVFKNQGMPGHMGRKRVTIQNLDLFKILP 183
                   4578**********************************8666********87559****************99999*99999965 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 5.9e-05
                   SCEEEEES--SSSTTEEEEEEE-SSGGGSC CS
  Ribosomal_L3 322 ndfilvkGsvpGpkkrlvklrkslltqtsr 351
                   ++ +lv Gs+pG +  +v +rk++  q s+
    CCG92961.1 185 DNALLVTGSIPGARGDVVIVRKAIKGQASN 214
                   7889********************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1650.78
//
Query:       CCG92962.1  [L=101]
Description: 30S ribosomal protein S10 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-38  130.6   0.1    2.2e-38  130.4   0.1    1.0  1  Ribosomal_S10  Ribosomal protein S10p/S20e


Domain annotation for each model (and alignments):
>> Ribosomal_S10  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.1   1.2e-42   2.2e-38       1      97 [.       6      99 ..       6     100 .. 0.99

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 1.2e-42
                   EEEEEESSHHHHHHHHHHHHHHTTSSS-EE---EEEEEEEEEEEEE--SS--S--EEEEEEEEEEEEEEEE.E-HHHHHHHS-...S---SS-EEEE CS
  Ribosomal_S10  1 rirlkSydsklLekavkkivraakelgikvkgpvplPtkrkrvtvlksphvdkksreqfeirthkRlidisdatketidtllkllqlnlpegVsvev 97
                   rirlkS+d++lL++a+++i ++a+++g  v+gp+plPtk +r+tv +sphvdkks++ feirthkRlidi+++t++t+d+l+k   lnlp+gV++++
     CCG92962.1  6 RIRLKSFDYRLLDRAASEIAETARRTGSAVSGPIPLPTKIERWTVNRSPHVDKKSMDLFEIRTHKRLIDIKEPTSKTVDELKK---LNLPAGVDISI 99
                   8**********************************************************************************...********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 721.27
//
Query:       CCG92963.1  [L=723]
Description: protein chain elongation factor EF-G,GTP-binding [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-69  231.8   0.0    8.4e-69  231.0   0.0    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
      3e-43  146.5   0.1    1.1e-42  144.6   0.0    1.9  2  EFG_IV       Elongation factor G, domain IV
    1.3e-35  121.3   0.1      3e-35  120.1   0.1    1.7  1  EFG_II       Elongation Factor G, domain II
    6.6e-29   99.8   0.0    1.8e-28   98.4   0.0    1.8  1  EFG_C        Elongation factor G C-terminus
    1.1e-15   57.8   0.8    3.9e-15   56.0   0.8    2.1  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    2.9e-07   30.4   0.0    6.2e-07   29.3   0.0    1.5  1  RF3_C        Class II release factor RF3, C-terminal domain
  ------ inclusion threshold ------
      0.011   15.9   0.0      0.034   14.2   0.0    1.9  2  MMR_HSR1     50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.0   0.0   3.3e-72   8.4e-69       2     194 .]      25     312 ..      24     312 .. 0.97

  Alignments for each domain:
  == domain 1  score: 231.0 bits;  conditional E-value: 3.3e-72
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE............TTCSSEEEEEEEESSSGGGHHHHH CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle............ketkkylinliDtPGHvdFskevi 88 
                 r+rnigi++h+D+GKtTLt+r+l++tg+i+k ge++e+++v+D++++ErergiTi++aais++             e++k++in+iDtPGHvdF+ ev+
  CCG92963.1  25 RTRNIGIAAHIDAGKTTLTERILFYTGMIHKMGEVHEGTTVTDWMEQERERGITITAAAISCFwpekkeqglvklFEGEKFRINIIDTPGHVDFTAEVE 123
                 78**********************************************************************9755*********************** PP

                 HHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH.................................. CS
    GTP_EFTU  89 rglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk.................................. 153
                 r+lrvlDg+++v++ v Gv+pq+e+v+r+a++++vp+i f+NKmDr++a+++++vee+++kl+                                    
  CCG92963.1 124 RSLRVLDGVIVVFCGVAGVQPQSETVWRQANRYKVPRIAFVNKMDRIGADFDKVVEEIRTKLDGYawpvllplgkedqlrgqidvicqkaivytdndrl 222
                 **************************************************************666********************************** PP

                 ..................................................HHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSHH CS
    GTP_EFTU 154 ..................................................eeklekygekgekevpvvfgSalkgegvktllealvellps 194
                                                                   +++++  ++k+e +vpvv gSa++++gv++l++a++++lps
  CCG92963.1 223 gstyvitdipeeyqavareakakliaaladrdeaiaelfleekeptpleiKQAIRRLVVKNE-FVPVVGGSAFRNKGVQSLINAVIDYLPS 312
                 *******************************9999999999999999999999999999985.**************************96 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.86   2.2e+03      28      65 ..     253     289 ..     237     295 .. 0.77
   2 !  144.6   0.0   4.4e-46   1.1e-42       1     121 []     509     628 ..     509     628 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.86
                 HCCCCCEEEECCTTTTSSEEEEE--STCCCHCCCCHHH CS
      EFG_IV  28 gqyakvileiePleegsgnefvdetkggqvpkeyieav 65 
                 +++a   l +e++e  + +e++ +++  +v +e+++ v
  CCG92963.1 253 RDEAIAELFLEEKE-PTPLEIKQAIRRLVVKNEFVPVV 289
                 55555666666665.78899999999999999999987 PP

  == domain 2  score: 144.6 bits;  conditional E-value: 4.4e-46
                 TCCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTTTTSSEEEEE--STCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE--TTT CS
      EFG_IV   1 pqVayrEtirkpvkereeklkkqsggdgqyakvileiePleegsgnefvdetkggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslhevd 99 
                 pq+ayrEtirk +   e+kl+kqsgg+gqy++vile+ Ple+g+g+e +++++gg +pkeyi+a+ kG+qeal  G+l g+pv+d+k+t++dgs+hevd
  CCG92963.1 509 PQIAYRETIRKHAV-GEGKLIKQSGGRGQYGHVILEMVPLERGKGVEWESKIVGGTIPKEYIPACFKGIQEALSAGILYGSPVIDLKITIIDGSYHEVD 606
                 8*************.9*********************************************************************************** PP

                 C-HHHHHHHHCHHHHHHHHCC- CS
      EFG_IV 100 sseaafkpaarralkeallkAs 121
                 sse+afk+aa +a+k+al+kA+
  CCG92963.1 607 SSELAFKMAAIFAVKDALKKAD 628
                 ********************95 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   0.1   1.2e-38     3e-35       1      74 [.     434     507 ..     434     508 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.1 bits;  conditional E-value: 1.2e-38
      EFG_II   1 fPePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelg 74 
                 fPePvis+a+epk ++d++kls++L+rl+eEDpt+rv++d+eT++ti+sGmGelHl+i+++rl+re++v+v+ g
  CCG92963.1 434 FPEPVISMAVEPKAQSDREKLSHSLQRLMEEDPTFRVHTDTETGQTIISGMGELHLDIITDRLRREFGVSVNAG 507
                 8**********************************************************************986 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.0   6.9e-32   1.8e-28       2      87 ..     631     715 ..     630     717 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 6.9e-32
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHHH CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdkld 87 
                 llEPi+kve+++p+e++g++++dl++rrG+i+++e++ +++ ii+ae+Plae++g+ +++rs++kG++ +sme s++eevp ++ +
  CCG92963.1 631 LLEPIMKVEVSTPSEFQGDILGDLTRRRGKILNVETK-GNTSIINAEVPLAEMFGYVNDIRSMSKGRAAYSMEPSHFEEVPIHIYN 715
                 89***********************************.*******************************************98765 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.8   1.5e-18   3.9e-15       1      74 []     354     421 ..     354     421 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 1.5e-18
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G +++ rvysG+l+kGd v++  ++t+k+   +ris++   +++e+ +++ ++ G+i+a++g+++ + +Gdtl+
   CCG92963.1 354 GKLVFFRVYSGILRKGDSVYN--VRTGKR---ERISRIVQIQANERKDIEVVYSGDIAALVGIKE-VATGDTLA 421
                  789******************..99*999...*********************************.9*****95 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.4e-10   6.2e-07      10      89 ..     438     517 ..     431     533 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2.4e-10
                 SEEEEEEESSGGGHHHHHHHHHHHHHCTSSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEE CS
       RF3_C  10 ElfarvrlkdplkrkqlrkgleqLaeEGavqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwv 89 
                  + + v+ k ++ r +l++ l+ L+eE  +   ++++++ ++i++ +G+L ++++++Rl++E+gv+v+    ++ +   +
  CCG92963.1 438 VISMAVEPKAQSDREKLSHSLQRLMEEDPTFRVHTDTETGQTIISGMGELHLDIITDRLRREFGVSVNAGAPQIAYRETI 517
                 45567999999*****************998888888999**************************99877766665555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.3e-05     0.034       2     114 .]      29     166 ..      28     166 .. 0.61
   2 ?   -3.3   0.0       3.8   9.6e+03      71      84 ..     239     252 ..     218     275 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
                 EEEEESTTSSHHHHHHHHH...TSTEEESSST...TSSSSEEEEEEEETTEE...............................EEEEECGGCSSHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt...gekaivsdkp...gtTrdinegrvklkgke...............................ielvDtpGliegasee 63 
                 ++i+ +  +GK+tL  +++   g   ++++ +    +T  ++++r      +                               i+++DtpG ++     
  CCG92963.1  29 IGIAAHIDAGKTTLTERILfytGMIHKMGEVHegtTVTDWMEQERE-----RgititaaaiscfwpekkeqglvklfegekfrINIIDTPGHVD----- 117
                 677777889*********7444333333333310033333322221.....12223444444555555566777777777777********665..... PP

                 HHHHHHHHHHHC.TSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  64 kglgkaflalee.adlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                   ++ ++++  +  d +++v+    ++++p+ e++ +  ++ k p i  +nk
  CCG92963.1 118 --FTAEVERSLRvLDGVIVVFC-GVAGVQPQSETVWRQANRYKVPRIAFVNK 166
                 ..56666665553588888885.54679999999988888888888888876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.8
                 HHHHCTSEEEEEEE CS
    MMR_HSR1  71 laleeadlillvvd 84 
                 ++  +a+li+ + d
  CCG92963.1 239 AREAKAKLIAALAD 252
                 22223555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 5130.53
//
Query:       CCG92964.1  [L=156]
Description: 30S ribosomal protein S7 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-60  203.3   3.4    1.5e-60  203.2   3.4    1.0  1  Ribosomal_S7  Ribosomal protein S7p/S5e


Domain annotation for each model (and alignments):
>> Ribosomal_S7  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.2   3.4   8.4e-65   1.5e-60       3     149 .]       2     149 ..       1     149 [. 0.98

  Alignments for each domain:
  == domain 1  score: 203.2 bits;  conditional E-value: 8.4e-65
                   XSSSSCT------SSTTSBHHHHHHHHHSBTTBHHHHHHHHHHHHHHHHHHHSS.-HHHHHHHHHHHCS-SEEEEEEBSSSSBEEEEEEE-HHHHHH CS
  Ribosomal_S7   3 rrkkakkrevlpdpkynselveklinklmkdGkkslAekivygaldiieektkk.dplevleeAlenvkPrvevksrrvGGatyqvpvevrpkRrqa 98 
                   rr++a++re+ pdpky+sel++kl+n++m++Gkks+A++ivy+a++ +++ +k+ dp+e++++A++nvkP++evksrrvGGatyqvpvev+p+R+++
    CCG92964.1   2 RRRRAERRELEPDPKYGSELITKLVNTVMRKGKKSVARRIVYDAIEALNQDNKEgDPVEIVRKAVDNVKPKLEVKSRRVGGATYQVPVEVNPHRQVS 98 
                   78999*********************************************765559***************************************** PP

                   HHHHHHHHHHSTSSSS-HHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTG CS
  Ribosomal_S7  99 lAlrwiieaarkrkeksmaekLaeElidAaegegaavkkreethrmAeanr 149
                   lAlrwi+++a++rk+ +m+++L  El+dAa+g+g+++kkr+e+h+mA+anr
    CCG92964.1  99 LALRWIVRYANSRKGVPMSKALFLELMDAANGQGSSIKKRDEVHKMAQANR 149
                   **************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1090.96
//
Query:       CCG92965.1  [L=141]
Description: 30S ribosomal protein S12 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-41  139.6   1.3    3.7e-41  139.3   1.3    1.1  1  Ribosom_S12_S23  Ribosomal protein S12/S23


Domain annotation for each model (and alignments):
>> Ribosom_S12_S23  Ribosomal protein S12/S23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   1.3   2.1e-45   3.7e-41       1     114 []      12     131 ..      12     131 .. 0.96

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 2.1e-45
                      --------S-TSSTTSSEEEEEEEEEEEE---TT--S-EEEEEEEET.TSEEEEEEE-SSS..----TT-EEEEEE--.....BTTSTTEEEEB CS
  Ribosom_S12_S23   1 rkelrkktksdalegapqkrGvvlekvtveakkPnsAlRkvvrvrLikngkevtafipgegalnfldEhdevlvrGirrkgkavkDlpGvrykv 94 
                      r++l++ktk++al+++pqkrGv+++++t ++kkPnsAlRkv++vrL+ ngke+ a+ipgeg  ++l+Eh++vlvrG+r     vkDlpGvry++
       CCG92965.1  12 REALKRKTKAPALDSCPQKRGVCVQVMTRTPKKPNSALRKVAKVRLT-NGKEIIAYIPGEG--HNLQEHSIVLVRGGR-----VKDLPGVRYHI 97 
                      678999*****************************************.*************..***************.....*********** PP

                      ET.............S---T.SSSTTTTT----T CS
  Ribosom_S12_S23  95 vk.............vagvs.lkalskykkekpk 114
                      ++             ++++s + ++sky+ ++pk
       CCG92965.1  98 IRgtldasgavgpsnTNKMSrNVSRSKYGVKRPK 131
                      *********9999888888878899****99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.55
# Mc/sec: 769.43
//
Query:       CCG92966.1  [L=293]
Description: Diacylglycerol kinase family enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-25   89.5   0.0    1.7e-25   89.0   0.0    1.2  1  DAGK_cat    Diacylglycerol kinase catalytic domain
    1.5e-06   27.7   0.0    2.5e-06   26.9   0.0    1.3  1  NAD_kinase  ATP-NAD kinase
  ------ inclusion threshold ------
       0.06   13.2   0.0       0.14   12.1   0.0    1.6  1  PEGA        PEGA domain


Domain annotation for each model (and alignments):
>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0   2.9e-29   1.7e-25       2     123 ..       5     119 ..       4     122 .. 0.94

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 2.9e-29
                 EEEEE-TTCTTTTHHHHHHHCHHHHHHCTCEEEEEE--STTHHHHHHHHHHHCC-SEEEEEESHHHHHHHHHHHCTHHCTTSEEEEEE-SS--HHHHHC CS
    DAGK_cat   2 llvivNpksGkgkgekllrkvrelleeagvelelieteepgdakelakeakeegvdlivvaGGDGtvsevlnglleelatkpplgiiPlGtgNdlaral 100
                 +++i+Np + ++k++ ll k+++++     e+ +   ++pgda++ ++ a e+g+dliv+aGGDGt++ev+ng+ +   +++ lgiiPlGt N +a  l
  CCG92966.1   5 ICIIFNPAARGEKAKYLLTKLHSVVG----EVPIKISQYPGDAEAKTEWAIEQGYDLIVAAGGDGTINEVVNGFNG---REVTLGIIPLGTINVFAMEL 96 
                 789******99999999999999987....678899999*************************************...******************** PP

                 T--SSHHHHHHCHHCTBEEEEEE CS
    DAGK_cat 101 gigkdieealesiikgetrkvdv 123
                 g++++ie+a+  i++g+++ +d+
  CCG92966.1  97 GLPRSIEKAWTIILEGKVKIIDL 119
                 ******************99987 PP

>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   4.2e-10   2.5e-06      48     138 ..      22     116 ..       4     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 4.2e-10
                 -HHHHTTTT--.........EEECCC-TTTTTSSSEEEEEE-HHHHHHHHHHHHHCT-EEEEEESSS--.SS-SE.EGGGHHHHHHHHHHT-SEE CS
  NAD_kinase  48 aefrsevisvlkkvkttd..dtrkaleafadagvdliivvGGDGTaldvarllqkaeiPvlgvnaGvkg.fltef.epeaaaellekllegeirv 138
                 +++ ++v+++ + + ++   d ++++e  +++g dli+++GGDGT+ +v+  ++  e+ +  +++G+++ f  e+  p+ + ++++ +leg++++
  CCG92966.1  22 LTKLHSVVGEVPIKISQYpgDAEAKTEWAIEQGYDLIVAAGGDGTINEVVNGFNGREVTLGIIPLGTINvFAMELgLPRSIEKAWTIILEGKVKI 116
                 44455555544444444477889999999**************************99999999***97527777799*************99987 PP

>> PEGA  PEGA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.4e-05      0.14       8      33 ..     253     278 ..     252     286 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.4e-05
        PEGA   8 SnpeGatVyidGkylGkTPvtlslea 33 
                 S+pe+  V +dG  +G TPv+ s ++
  CCG92966.1 253 SSPEEIPVELDGDFYGYTPVSFSCDQ 278
                 899*****************998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1976.14
//
Query:       CCG92967.1  [L=420]
Description: AsmA family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-12   45.3   0.5      1e-11   44.8   0.5    1.2  1  AsmA_2    AsmA-like C-terminal region


Domain annotation for each model (and alignments):
>> AsmA_2  AsmA-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.5   5.7e-16     1e-11      16     229 .]     193     392 ..     178     392 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 5.7e-16
      AsmA_2  16 rldnlrlrspggklsgsgs..wstkggaartnldlkldgvdlgallkrlglae.vl.gGkgslelnlswqgaplspdlssLsGdlsleledgqilgvsl 110
                 +  +l + + ggkl +s s   ++++++ +++ +   +g+++++l++ ++ ++ +   G +s ++     g+   + l+ + G++++++e+g+i+++  
  CCG92967.1 193 QHLDLDALLAGGKLHLSLSniPNNQDKEKKLQWKIISSGSNVEELFSLIDPHGsYSiSGLLSCKA----DGSINKMELNAIEGNGTFQIEQGKIKNLA- 286
                 55677788889999888886566677778999999999999999999777433132244444444....48888899*******************43. PP

      AsmA_2 111 lrdlgllk.ltldfrdlfgeglafddikgtftienGvvttkdfklkgpaaavtvsGtvdldtetldlnvvvvppisaslavvaalainlaalaaqklls 208
                      l++ l+  +++ ++++ +f++  g+f+i++G + ++d+ + +++ ++   G + +d  ++d+++++ ++ +     +          a+   l+
  CCG92967.1 287 -----LFQeLSGLLKNTNLKTPEFEKWYGSFKIKEGKILLSDMSILSNSFSMIGNGFLRFD-SSIDMDLKILLNKTFFNGTLPD--------ALLNKLN 371
                 .....333344567***********************************************.*************987666666........5777888 PP

      AsmA_2 209 ddlekiaaleyrvtGswdsPk 229
                    + +++++++++G++++Pk
  CCG92967.1 372 VHSNALTSIPVKISGTLANPK 392
                 88999***************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3083.76
//
Query:       CCG92968.1  [L=182]
Description: N6-adenine-specific methylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-40  137.2   0.0    5.1e-40  137.0   0.0    1.0  1  Cons_hypoth95    Conserved hypothetical protein 95
    3.8e-08   33.9   0.0    9.6e-08   32.6   0.0    1.7  2  Methyltransf_25  Methyltransferase domain
    4.1e-08   32.9   0.0    5.5e-08   32.5   0.0    1.1  1  MTS              Methyltransferase small domain
    0.00011   21.8   0.0    0.00018   21.1   0.0    1.3  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
    0.00013   21.8   0.0    0.00017   21.4   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    0.00018   21.0   0.0    0.00023   20.7   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00026   20.8   0.0     0.0082   15.9   0.0    2.0  1  UPF0020          Putative RNA methylase family UPF0020
    0.00045   19.5   0.0    0.00063   19.0   0.0    1.1  1  Methyltrans_SAM  S-adenosylmethionine-dependent methyltransfe
     0.0087   15.8   0.0      0.033   13.9   0.0    1.8  2  N6_N4_Mtase      DNA methylase
     0.0095   15.7   0.0       0.01   15.6   0.0    1.1  1  Met_10           Met-10+ like-protein
  ------ inclusion threshold ------
       0.02   15.5   0.0      0.027   15.1   0.0    1.3  1  Methyltransf_11  Methyltransferase domain
       0.03   14.1   0.0      0.038   13.8   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      0.044   13.5   0.0       0.17   11.5   0.0    1.7  2  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran
      0.068   12.6   0.0      0.068   12.6   0.0    1.1  1  Spermine_synth   Spermine/spermidine synthase domain
      0.097   12.4   0.0       0.13   12.0   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase


Domain annotation for each model (and alignments):
>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.0   4.3e-43   5.1e-40       1     181 [.       3     178 ..       3     179 .. 0.92

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 4.3e-43
                    EEXXSCCCTTXEEEXTTXXXXXSSSHHHHHHHHHHHCCCHCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEE CS
  Cons_hypoth95   1 lriigGkakgrkLkvlegkstRPttdrvrealFnilaaeiegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetael 96 
                    lriigG akg +L+v++ + +RP  +r+r a+F+ l+  ieg +vLDlfaGsG+lg+EAlSRga+++++v+ +ke +  +++nl++ +le+  + +
     CCG92968.1   3 LRIIGGIAKGTPLHVPKKTVVRPALSRMRAAIFSSLGDWIEGRNVLDLFAGSGSLGIEALSRGASSCTFVDLSKECIDCISNNLKKAHLEG--NLI 96 
                    69**************************************************************************************998..9** PP

                    EES-HHHHCTS--SS-EEEEEEE--SSSTTCH....HHHHHHHHHTT-EEEEEEEEEEEECCSSS--.-TTEEEEEEEEETTEEEEEE CS
  Cons_hypoth95  97 kedaleallklakkkeefdivflDPPyakell...ieevlelleekkllkenalvvvetekekelpespenlelvkekkygettlaly 181
                     +d ++ l+k+   ke+f++vf  PPy k+        +l+l+  ++ +  ++l v e  ++ ++++ p+ + ++ ek+ get+++++
     CCG92968.1  97 LMDVFKFLQKN---KEKFELVFASPPYIKVSKpvdSSSLLSLV--HQNIDSEGLFVWEFYSK-NILRLPDFWVIHWEKTIGETKVWIL 178
                    ******99888...688***********998753333444444..58999********9666.999******************9986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0     8e-11   9.6e-08       1      79 [.      47     126 ..      47     144 .. 0.84
   2 ?   -0.6   0.0       1.9   2.2e+03      30      59 ..     129     159 ..     124     162 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 8e-11
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSSSTTTEEEEEEEST.GGGSSH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaed.lpfedgsfDlvvssga.lhhlsd 79 
                      vLdl +G+G l ++++ r g+++ t vD+s+e+++ + +++++++l+ +++ +d+ + l+ ++++f lv++s   + + ++
       CCG92968.1  47 VLDLFAGSGSLGIEALSR-GASSCTFVDLSKECIDCISNNLKKAHLEGNLILMDVFKfLQKNKEKFELVFASPPyIKVSKP 126
                      9*****************.69**********************************774789999******97655554444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.9
                      SHHHHHHHHHHHHHTTT.TEEEEESBCCGBS CS
  Methyltransf_25  30 seemleaareraeeegl.nvefvqgdaedlp 59 
                      s+++l  +++++++egl  +ef+ +++ +lp
       CCG92968.1 129 SSSLLSLVHQNIDSEGLfVWEFYSKNILRLP 159
                      4567888999999999999999999999887 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   4.6e-11   5.5e-08      31     109 ..      43     122 ..      32     142 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 4.6e-11
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTST..TS-EEEEEE---STT CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeve..ekkfdlivsNPPfha 109
                 + ++vlDl +G G lg++++++  + + t+vd +++ +++  +nl++ +le++++  dv++ ++  ++kf+l+   PP+ +
  CCG92968.1  43 EGRNVLDLFAGSGSLGIEALSRGAS-SCTFVDLSKECIDCISNNLKKAHLEGNLILMDVFKFLQknKEKFELVFASPPYIK 122
                 4689****************98888.8********************************9866644799*********754 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.5e-07   0.00018       3      81 ..      46     120 ..      44     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.5e-07
  Methyltransf_15   3 vilDlfsGaGGnviqfalv.fekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvflSpPw 81 
                       +lDlf+G+G   i+      ++   ++ ++e + c+ +N +    + +  l+l dvf+ l+k k    k++lvf+SpP 
       CCG92968.1  46 NVLDLFAGSGSLGIEALSRgASSCTFVDLSKECIDCISNNLKKAHLEGN--LILMDVFKFLQKNK---EKFELVFASPPY 120
                      69********9998754442788999****************9977776..57779999998844...4568*******6 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.4e-07   0.00017       5     110 ..      45     149 ..      43     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.4e-07
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevl...naladpdkil 94 
                       +vlDl +G+G l++e+ ++    +  + +D s+e i    +n++k  l+  ++   d+++ l+k+  +ekf l+++  +        d+ + l
       CCG92968.1  45 RNVLDLFAGSGSLGIEALSRG--ASSCTFVDLSKECIDCISNNLKKAHLE-GNLILMDVFKfLQKN--KEKFELVFASPPYikvSKPVDSSSLL 133
                      68****************764..4567789*******************8.8999******99965..799******97775556666777788 PP

  Methyltransf_31  95 eeiervlkpggillie 110
                        +++++ ++g ++ e
       CCG92968.1 134 SLVHQNIDSEGLFVWE 149
                      8888888888888765 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.9e-07   0.00023     161     232 ..      43     116 ..       8     117 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.9e-07
        PrmA 161 egeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellk..eekadviva 232
                 eg++vlD+ +GSG L i a+  ga++ + vD+ +  ++   +N+++ ++e +l ++   + l+  +ek+++++a
  CCG92968.1  43 EGRNVLDLFAGSGSLGIEALSRGASSCTFVDLSKECIDCISNNLKKAHLEGNLILMDVFKFLQknKEKFELVFA 116
                 5789**********************************************988553222222234688888887 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.8e-06    0.0082      17     132 ..      32     121 ..      20     142 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.8e-06
                 HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG- CS
     UPF0020  17 AaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakL 115
                 Aa +  l +w +g+  lD + GsG++ IEa   ga+                             +Dl ++ +++  +N++ka +++   + +  ++ L
  CCG92968.1  32 AAIFSSLGDWIEGRNVLDLFAGSGSLGIEALSRGASSC-------------------------TFVDLSKECIDCISNNLKKAHLEGNLILMD-VFKFL 104
                 67778899**********************99998888.........................358999999999999999999888765555.34445 PP

                 -STTS---EEEE----- CS
     UPF0020 116 rlkegevdvivtnpPYG 132
                 ++++++++++ + pPY 
  CCG92968.1 105 QKNKEKFELVFASPPYI 121
                 66667899999999985 PP

>> Methyltrans_SAM  S-adenosylmethionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.3e-07   0.00063     122     206 ..      42     121 ..      32     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.3e-07
  Methyltrans_SAM 122 akdknvlnlfaytcgfsvaaiaggaskvvnvdmargslnkgrdnhrlnghdlrrvsflgydifkswgkikksgpydlviidppsf 206
                       +++nvl+lfa +  + + a++ gas +  vd+++  ++   +n +    +l + +++  d+fk   k k   +++lv   pp +
       CCG92968.1  42 IEGRNVLDLFAGSGSLGIEALSRGASSCTFVDLSKECIDCISNNLKKA--HL-EGNLILMDVFKFLQKNK--EKFELVFASPPYI 121
                      5689**********************************9998886644..33.35677789***988765..5799999999965 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.8e-05     0.033     191     227 ..      43      80 ..      30      85 .. 0.83
   2 ?   -0.7   0.0       0.8   9.6e+02       2      15 ..     112     125 ..     111     156 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.8e-05
                  TT-EEEETT-TTTHHHHHHHHTT-EEEE.EESSHHHHH CS
  N6_N4_Mtase 191 kgdivlDpFaGSGtTavaakelgrkfiG.ieieeeyve 227
                  +g +vlD FaGSG+ +++a++ g  +   ++ ++e ++
   CCG92968.1  43 EGRNVLDLFAGSGSLGIEALSRGASSCTfVDLSKECID 80 
                  6889****************999887766777777665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.8
                  EEEEE--SSSSSCS CS
  N6_N4_Mtase   2 dlivtdpPYntgkd 15 
                   l++++pPY  +++
   CCG92968.1 112 ELVFASPPYIKVSK 125
                  58999999976655 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   8.3e-06      0.01     100     168 ..      43     108 ..      22     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.3e-06
                 TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT- CS
      Met_10 100 egevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireql 168
                 eg  V+d+fAG G + i +     a+    +dl  e +  + +n+k  ++e  +  il+D+ +++++++
  CCG92968.1  43 EGRNVLDLFAGSGSLGIEALSR-GASSCTFVDLSKECIDCISNNLKKAHLEGNL--ILMDVFKFLQKNK 108
                 7899*************99874.4566899**********************99..******9997443 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   2.3e-05     0.027       3      68 ..      50     117 ..      48     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.3e-05
                      ET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.TSS-TT-EEEEEEE CS
  Methyltransf_11   3 vGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaek.lpfednsfDlvvss 68 
                      + +G+G+l  +  +rg ++++ vDlske +++ +++ ++++l+ +++ +d+ k l+ ++++f lv++s
       CCG92968.1  50 LFAGSGSLGIEALSRGaSSCTFVDLSKECIDCISNNLKKAHLEGNLILMDVFKfLQKNKEKFELVFAS 117
                      55666665544444666************************97789******95599999*****987 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.2e-05     0.038      22     116 ..      43     147 ..      21     174 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.2e-05
  Methyltransf_23  22 aggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae..........kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp...dppel 101
                      +g +vLd+ +G+G+l  ++  +g+ s+t+vDls e+++ ++          + + +   +f     +++++kf+l+ ++     v    d  +l
       CCG92968.1  43 EGRNVLDLFAGSGSLGIEALSRGAsSCTFVDLSKECIDCISnnlkkahlegNLILMDVFKF----LQKNKEKFELVFASPPYIKVSkpvDSSSL 132
                      567**********9988888888879************99977766666664444444444....77777788888776544444433445566 PP

  Methyltransf_23 102 lrqiatllkpgGyll 116
                      l+ +++++  +G+++
       CCG92968.1 133 LSLVHQNIDSEGLFV 147
                      666666666666655 PP

>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.17      21      64 ..      44      88 ..      32     113 .. 0.74
   2 ?    0.4   0.0      0.35   4.2e+02     170     190 ..     103     123 ..      84     140 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
                     -SEEEETT-TTSCCHHCS....SSCEEEEES-HHHHHHHHHHCCH CS
  MethyltransfD12 21 gktfvepFaGggaVffeakk.qgkkvlinDinedlinlykalikn 64
                     g+ + ++FaG+g++++ea++     ++  D+ ++ i +  + +k+
       CCG92968.1 44 GRNVLDLFAGSGSLGIEALSrGASSCTFVDLSKECIDCISNNLKK 88
                     67899*************996667888889999988887766655 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.35
                      HHTT--TTE.EEEE--S-T.S CS
  MethyltransfD12 170 vllkakieddivYlDPPYnpr 190
                      +l+k k++ ++v+  PPY   
       CCG92968.1 103 FLQKNKEKFELVFASPPYIKV 123
                      455556677799999***875 PP

>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.7e-05     0.068      44      99 ..      68     117 ..       5     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.7e-05
                     EEEEEES-HHHHHHHHHHSHHHHTTCGGCTTEEEEESTCHHHHCTCSS-EEEEEEE CS
  Spermine_synth  44 kitlvdiDqkvidfskkflpslaisafndarvklvlgdgfkflkayekkfdvvivd 99 
                     + t+vd+ ++ id   ++l++ + +       +l+l+d fkfl++ ++kf  v + 
      CCG92968.1  68 SCTFVDLSKECIDCISNNLKKAHLE------GNLILMDVFKFLQKNKEKFELVFAS 117
                     6788999999999999999988888......89******************99875 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011      0.13      45     111 ..      42     107 ..      27     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
  Methyltransf_16  45 lsklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnknalkskvkvevLdWgeel 111
                       ++++vl+L +G+G  G+ + +  +  + +  Dl++  ++++ +n++   ++  + + ++v +  ++ 
       CCG92968.1  42 IEGRNVLDLFAGSGSLGIEALSR-GASSCTFVDLSKeCIDCISNNLKK-AHLEGNLILMDVFKFLQKN 107
                      5789**************98777.78899999997659********99.4466677777777775544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1184.16
//
Query:       CCG92969.1  [L=53]
Description: hypothetical protein MFUM_870051 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 382.20
//
Query:       CCG92970.1  [L=223]
Description: Uncharacterized erfK/srfK family protein (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-18   68.2   0.3    1.4e-18   67.7   0.3    1.2  1  YkuD      L,D-transpeptidase catalytic domain


Domain annotation for each model (and alignments):
>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.3   7.7e-23   1.4e-18       2     146 .]      48     181 ..      47     181 .. 0.82

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 7.7e-23
                 EEEEEETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTT.....CECCCCEEE- CS
        YkuD   2 kyivvdlaeqrllvlyengklvlsfpvsvGgkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskv.....algkvkfvfp 95 
                 +++ v+l+ q ++++ ++gk+++  p++vG   + +++TP G f i++k+ +  ++ ++ +  ++ +  +++  +  +               +++  +
  CCG92970.1  48 RIVKVSLQGQ-TVYVLDRGKVIFVAPCTVG---KSGHPTPKGIFHISAKSIKKRSHSYGFWVKGNDIRATENPSKPPP-----GgpweyVGYPMPYWVE 137
                 7899*****5.55888**************...55*****************99998888887777766664333333.....133445888899999* PP

                 STTS-EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEEEE CS
        YkuD  96 ngsgiyiHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpvvi 146
                 + +g+++H     + f   ++++r+hGCirl+ + a e+++lv  gt++ i
  CCG92970.1 138 FAPGYGFH-----EGF--VWTTPRTHGCIRLHGKTAIEFFNLVNIGTKILI 181
                 ********.....222..4468*************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1574.99
//
Query:       CCG92971.1  [L=434]
Description: Sulfite oxidase or related enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-46  155.6   0.0    1.4e-45  154.9   0.0    1.2  1  Oxidored_molyb  Oxidoreductase molybdopterin binding domain
    7.9e-15   55.1   0.1    1.7e-14   54.0   0.1    1.5  1  Mo-co_dimer     Mo-co oxidoreductase dimerisation domain
  ------ inclusion threshold ------
      0.019   15.7   0.0      0.042   14.6   0.0    1.5  1  Big_7           Bacterial Ig domain


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.9   0.0   2.4e-49   1.4e-45       5     172 .]     109     281 ..     105     281 .. 0.94

  Alignments for each domain:
  == domain 1  score: 154.9 bits;  conditional E-value: 2.4e-49
                     -.-.GCCC-EEEEESTCSSEEEEEHHHHHH.C-EEEEEEEEE-TTTTHHHHCHH--SS----TTSEEEEEEEEEEHHHHHHHTTB-ETT..EEEE CS
  Oxidored_molyb   5 p.kvdpekwrlevdglvekplslslddLka.lpavevtatlqCagnrrkelnkkkvkglqwgagavsnaeWtGvrlrdvLekagvkkpearhvvf 97 
                     p ++d +kwrl ++g+ ++p+s+s++dL + ++ v+v+a+ qC+gn+r+ +   +v g+qwg+ga++na+WtGvrl dvL+ka++k p++ +++f
      CCG92971.1 109 PnSIDLSKWRLYLEGNFANPISFSFADLLTqFDPVSVVAVNQCSGNSRSRFYP-RVPGAQWGNGAMGNAKWTGVRLMDVLQKAKIK-PNTVQIQF 201
                     5467999*********************988*****************99994.5******************************7.******** PP

                     EEEEE-T.....CCTEEEEEEEHHHHCTTT-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTEEEEEEESS---SHH CS
  Oxidored_molyb  98 egadeel.....eeskygasiplekaleddvlLAyemngepLppdhGyPlRlvvpglvgarsvKwlkrievsdeesegyw 172
                     +g d+ +       +++ +s++ ++ + ++++LAy+mngepLp  +G+PlRlvvpg +++ ++K+l+ i+  d++ +++w
      CCG92971.1 202 QGFDYGRspegtPAHAFIKSLDRNDPILEETILAYAMNGEPLPLLNGFPLRLVVPGKFATYWIKHLTWIRALDTPDTNFW 281
                     ***987778777788899999999888799**********************************************9999 PP

>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.1   2.9e-18   1.7e-14       6     131 ..     316     421 ..     313     428 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 2.9e-18
                  S---EEEE-SS-SEEEE-S....EEEEEEEEEE-STT--EEEEEEESSTTSS-EE-EEESSSSS---..SSTTS-TTS-EEEEEEEEESS...E.EEE CS
  Mo-co_dimer   6 dlnvnsvicspeheekvklkeaeetytikGyaysGgGrritrvevsldkGksWklaeieyeedkereakeesretafcwvfweldvevselakekeil 103
                  +++v+s i++p+ + k+  k     +++kG a+sG G ri++ve s d+G+ W+ a ++++  k            +++ +w+l+    +   e  ++
   CCG92971.1 316 QMPVRSFIIQPTGDVKLVEK---MGVQVKGIAFSGYG-RIVKVEFSADGGSHWQEAMLDRDLGK------------YSFRLWHLNWTPRQ-PGEYLLA 396
                  799********999888775...59************.9*******************999444............899*****998777.48889** PP

                  EEEEETT--B--SHHH--TT-------E CS
  Mo-co_dimer 104 vravDealnvqPeemiwnvlgmlnnawf 131
                   ra+De+ n+qP++ iwn  g     w 
   CCG92971.1 397 SRAWDEKGNTQPTTPIWNPGGYC---WN 421
                  ******************88865...44 PP

>> Big_7  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     7e-06     0.042       5      62 ..     323     389 ..     322     404 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7e-06
                 EEE--TT--EB.TSEEEEEEEEE-S.S-EEEEEEEETTEE..........EEEE-SSSEEEEEE--... CS
       Big_7   5 itsPangatvs.ggtvtisasAsdd.ggvskVefyvdgtl.g........lgtdtsapysltwtttalt 62 
                 i+ P+   ++  +  v++++ A    g + kVef++dg + +        lg+ +   + l+wt+   +
  CCG92971.1 323 IIQPTGDVKLVeKMGVQVKGIAFSGyGRIVKVEFSADGGShWqeamldrdLGKYSFRLWHLNWTPR--Q 389
                 56677777777666899*****9999**************77999977777777778999999997..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3017.97
//
Query:       CCG92972.1  [L=152]
Description: Cytochrome c family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.014   15.7   0.4      0.065   13.6   0.4    1.9  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   3.6e-06     0.065       7      67 .]      88     141 ..      84     141 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.6e-06
  Cytochrome_CBB3   7 aalykknCasCHgkggagpslagrdwepdalvdiiknGkgaMpafggqlsdeelwalvaYl 67 
                      +++ +++C+ CH +           ++p+   ++ ++ +++M   g q++++ +  ++++l
       CCG92972.1  88 QEVVQSYCSMCHSTTI-------ISLQPKFSLKTWRHEVEKMKQLGAQIPEDMISHIIEFL 141
                      78999*******9442.......25556666667777777788887788877777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1093.41
//
Query:       CCG92973.1  [L=434]
Description: S-adenosyl-L-homocysteine hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.3e-134  446.7   0.0    1.7e-73  247.4   0.0    2.0  2  AdoHcyase      S-adenosyl-L-homocysteine hydrolase
    5.5e-80  267.1   1.0    7.7e-80  266.7   1.0    1.2  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
    2.4e-09   36.8   0.1      4e-09   36.1   0.1    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    0.00016   21.3   0.1    0.00024   20.7   0.1    1.3  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
    0.00026   20.4   3.0    0.00054   19.3   3.0    1.5  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
     0.0067   16.7   0.2      0.016   15.5   0.2    1.7  1  TrkA_N         TrkA-N domain
     0.0076   15.6   0.9      0.026   13.9   0.9    1.8  1  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
  ------ inclusion threshold ------
      0.012   16.0   0.4      0.028   14.8   0.4    1.6  1  NAD_binding_7  Putative NAD(P)-binding
      0.037   14.0   0.3      0.094   12.7   0.1    1.7  2  ADH_zinc_N     Zinc-binding dehydrogenase
       0.15   11.7   0.9       0.39   10.4   0.8    1.6  1  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro


Domain annotation for each model (and alignments):
>> AdoHcyase  S-adenosyl-L-homocysteine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.4   0.0   9.5e-77   1.7e-73       1     138 [.       3     139 ..       3     141 .. 0.98
   2 !  199.5   0.0   3.6e-62   6.5e-59     171     299 .]     139     433 ..     138     433 .. 0.98

  Alignments for each domain:
  == domain 1  score: 247.4 bits;  conditional E-value: 9.5e-77
                 --B-S-GGGHHHHHHHHHHHHCC-HHHHHHHHHCTTT-TTTT-EEEEES--SHHHHHHHHHHHHTT-EEEEE-SSTTT--HHHHHHHCCTTEEEE--TT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase   1 dykvkdislaefGrkeielaekempglmalreeyaeekplkgariaGslhmtiqtavLietLvalGaevrWasCnifstqdeaaaaiaeagvpvfawkg 99 
                 d+kvkd++la+fGrkeie+ae empglmalr+ey+   plkg+riaG+lhmt++tavLietLv+lGa+vrW+sCnifstqd+aaaaia++g+pvfawkg
  CCG92973.1   3 DFKVKDMELADFGRKEIEVAEDEMPGLMALRKEYKGLYPLKGTRIAGCLHMTVETAVLIETLVELGASVRWSSCNIFSTQDHAAAAIAARGIPVFAWKG 101
                 79************************************************************************************************* PP

                 --HHHHHHHHHHCHS-SSTS-S-SEEEESSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase 100 etleeywwcieqalkwaedekepnlilDdGGDltllvhk 138
                 etleey wc+eq+l+w+ d+++ n+ilDdGGDlt+lvh+
  CCG92973.1 102 ETLEEYEWCMEQTLRWP-DGQTLNMILDDGGDLTELVHQ 139
                 **************997.6779****************8 PP

  == domain 2  score: 199.5 bits;  conditional E-value: 3.6e-62
                 THHCCCHCC--EEEE-SHHHHHHHHHHHHTT---SEEEESTTSHHHCTTH................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
   AdoHcyase 171 kkytellkkikGvseetttGvhrLyelakkgkLlvpainvndsvtkskfD................................................. 220
                 +ky+ell+ i G+seetttGvhrLy+ ++kg+L  p++nvnds tkskfD                                                 
  CCG92973.1 139 QKYPELLDGIVGISEETTTGVHRLYQREAKGTLGPPSMNVNDSCTKSKFDnlygcresfldgvkratdvmiagkivvvcgygdvgkgcvqsakgmgarv 237
                 79************************************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
   AdoHcyase 221 ................................................................................................... 220
                                                                                                                    
  CCG92973.1 238 ivteidpinalqasmdgyevtlledvvekadlfvtatgcinvirrehmdrmksgaivcnighfdseievrslyedkrlqriqikpqvdmflwpdgkkly 336
                 *************************************************************************************************** PP

                 ...............S-HHHHHHHHHHHHHHHHHHHHT..TSSS-SS.EEE--CHHHHHHHHHCCCCCT-------HHHHHCCTSXTTSXXSXTTXX CS
                 ...............xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase 221 ...............hpsfvmsasftnqvlaqielfkk..ekkyekk.vyvlpkklDekvarlhleklgaklteltkeqaeyigveveGPfkpdhYr 299
                                hpsfvmsasftnqvlaqiel++k  + +y+++ vy+lpk lDekvarlhleklg+klt+ltkeqa+y+gv+ eGP+kp+hYr
  CCG92973.1 337 vlaegrlvnlgcasgHPSFVMSASFTNQVLAQIELWTKrhSGEYKRGkVYTLPKILDEKVARLHLEKLGVKLTRLTKEQADYLGVPIEGPYKPNHYR 433
                 *************************************73444555547************************************************9 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.7   1.0   4.3e-83   7.7e-80       1     162 []     189     351 ..     189     351 .. 0.98

  Alignments for each domain:
  == domain 1  score: 266.7 bits;  conditional E-value: 4.3e-83
                    HHHHHCCCCCHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEEEE-SSSSSSB-HHH CS
  AdoHcyase_NAD   1 nlygcreslvdgikratdvllaGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadivvtttGnkdiitleh 96 
                    nlygcres++dg+kratdv++aGk++vv+GyGdvGkGc +s kg+Garvivte+dPi+alqa+m+G+ev+ le+vv+kad++vt+tG+ ++i++eh
     CCG92973.1 189 NLYGCRESFLDGVKRATDVMIAGKIVVVCGYGDVGKGCVQSAKGMGARVIVTEIDPINALQASMDGYEVTLLEDVVEKADLFVTATGCINVIRREH 284
                    89********************************************************************************************** PP

                    HCCS-TTEEEEE-SSTTTTBTHHHHHTT.T-EEEEEETTEEEEE-TTS-EEEEEGGGSBCHHHTS-- CS
  AdoHcyase_NAD  97 lkkmkddaivcniGhfdseidvaalean.alkkeevkpqvdrvtlkdgkkiillaeGrllnlgcatg 162
                    +++mk  aivcniGhfdsei+v +l +   l+++++kpqvd++ ++dgkk+ +laeGrl+nlgca+g
     CCG92973.1 285 MDRMKSGAIVCNIGHFDSEIEVRSLYEDkRLQRIQIKPQVDMFLWPDGKKLYVLAEGRLVNLGCASG 351
                    *************************8875899********************************986 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.1   2.2e-12     4e-09      33     127 ..     208     298 ..     193     304 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.2e-12
                   -GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS CS
  2-Hacid_dh_C  33 elsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltpetrhlinaeelakmkkgailiNta 127
                    ++gk v + G+G++G+   + +k++g++vi+++  + +  +++  g+e++ le++++++D  + ++       ++i +e++++mk+gai+ N++
    CCG92973.1 208 MIAGKIVVVCGYGDVGKGCVQSAKGMGARVIVTEIDPINALQASMDGYEVTLLEDVVEKADLFVTATG----CINVIRREHMDRMKSGAIVCNIG 298
                   6899********************************9988899999***************9998876....679******************98 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   1.3e-07   0.00024       2      89 ..     209     292 ..     208     324 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.3e-07
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT- CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliPDelqkevyeeeiepnlkegk 89 
                 + gk ++v GyG  G+   +  +  g  v+v+  +   ++ +A+ +g+ev+ ++++v+kad+ ++ +      +v+++e ++ +k+g+
  CCG92973.1 209 IAGKIVVVCGYGDVGKGCVQSAKGMGARVIVTEIDPI-NALQASMDGYEVTLLEDVVEKADLFVTAT---GCINVIRREHMDRMKSGA 292
                 7899***************************988877.7889*******************977654...344555555566666665 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   3.0     3e-07   0.00054      30     126 ..     213     296 ..     199     299 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3e-07
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE---BTTSS---SC-HHHHHTS-TTEEEEE CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtvlipGkkaPkLvteemvksMkpgsVivD 126
                   v+v G G +G   ++ akg+ga+V v++++p  + q + + +        +  ll++ v++ad+ +++         +++++e++++Mk+g+++  
   CCG92973.1 213 IVVVCGYGDVGKGCVQSAKGMGARVIVTEIDPINALQAS-MDGY-------EVTLLEDVVEKADLFVTAT-----GCINVIRREHMDRMKSGAIVCN 296
                  37889************************9997766654.4444.......456899***********94.....45689*************9965 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   8.9e-06     0.016       1      49 [.     214     263 ..     214     297 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 8.9e-06
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSE.EEES-T CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreegle.vvvgda 49 
                 ++++G+G+vG+  ++  +  g  +v+v + d+ ++ +++ +g+e ++  d+
  CCG92973.1 214 VVVCGYGDVGKGCVQSAKGmGA-RVIVTEIDPINALQASMDGYEvTLLEDV 263
                 79*****************666.6********9999999999883333444 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.9   1.4e-05     0.026      71     110 ..     258     300 ..     201     321 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
                    CCHHHHHCCSSEEEE-SS-TT-B-GGGS...-TT-EEEE---E CS
  THF_DHG_CYH_C  71 kdlaeitreadivvvavGkpelikaemv...kegavviDvGin 110
                    + l++++++ad+ v+a+G  ++i++e++   k+ga+v ++G+ 
     CCG92973.1 258 TLLEDVVEKADLFVTATGCINVIRREHMdrmKSGAIVCNIGHF 300
                    458999*****************998755559*********85 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.4   1.6e-05     0.028       5      91 ..     209     297 ..     207     306 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeeel.ekdlegadlviaatddrel.neriaeaakarrilvnv 91 
                    + gk v+v G G+v+   v++    ga+v+v   +  ++l+  ++  e +l e+ +e+adl ++at   ++ +++ ++ +k+  i++n+
     CCG92973.1 209 IAGKIVVVCGYGDVGKGCVQSAKGMGARVIVTEIDPINALQASMDGYEVTLlEDVVEKADLFVTATGCINViRREHMDRMKSGAIVCNI 297
                    67899**************************888855666655554344444899***********98555144466666777777776 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   5.2e-05     0.094       2      39 ..     222     259 ..     222     279 .. 0.81
   2 ?   -3.9   0.0       7.4   1.3e+04      83     103 ..     341     361 ..     339     370 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.2e-05
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEE CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakklGadevi 39 
                 vG   vq Ak +Ga+vi++ +++ ++ +a   G ++++
  CCG92973.1 222 VGKGCVQSAKGMGARVIVTEIDPINALQASMDGYEVTL 259
                 8999*****************99877666655666555 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 7.4
                 EEEEECSCTSSEEEEEHHHHH CS
  ADH_zinc_N  83 GrlvvvGggkgeeefdlrnll 103
                 Grlv  G  +g+ +f ++  +
  CCG92973.1 341 GRLVNLGCASGHPSFVMSASF 361
                 899999985555555555444 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.8   0.00022      0.39      22      59 ..     201     238 ..     191     294 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00022
                    HHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEE CS
  ELFV_dehydrog  22 lkklkldslegkrvaisGsGnvgsyaallltelgakvv 59 
                    +k++    ++gk v++ G+G+vg+ +++ ++ +ga+v+
     CCG92973.1 201 VKRATDVMIAGKIVVVCGYGDVGKGCVQSAKGMGARVI 238
                    4443333699*************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3069.01
//
Query:       CCG92974.1  [L=396]
Description: methionine adenosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-67  223.5   2.2    1.6e-64  216.0   0.1    2.4  2  S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal 
    7.4e-48  161.8   0.0    5.4e-47  159.0   0.0    2.2  2  S-AdoMet_synt_M  S-adenosylmethionine synthetase, central dom
    3.3e-38  130.4   0.3    3.3e-38  130.4   0.3    2.4  3  S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal 
     0.0054   15.6   7.5       0.51    9.1   0.2    2.8  3  AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synt


Domain annotation for each model (and alignments):
>> S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.2    0.0014       6.4      74     102 ..     184     215 ..     173     233 .. 0.74
   2 !  216.0   0.1   3.6e-68   1.6e-64       2     138 .]     242     382 ..     241     382 .. 0.96

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0014
                      SS-S...EEEEEE-S-BSS-HHHHHHHHHHH- CS
  S-AdoMet_synt_C  74 aepv...sisvetfgtekvseeeiaeivkevf 102
                      ++p+   +i v+t++te+vs++ei+ei+k+ +
       CCG92974.1 184 NKPMrveAIVVSTQHTEEVSNKEIEEIIKKEV 215
                      4555334789******************9864 PP

  == domain 2  score: 216.0 bits;  conditional E-value: 3.6e-68
                      -TTTTS-EETTS-TTTTTTTTSS---S---TTB-TTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEE-TT-SS-SEEEEEE-S-BSS-HHHHH CS
  S-AdoMet_synt_C   2 GgpkgdaGltgrkiivdtYgglaahgggafsgKdptkvDrsaayaaryvaknlvaaglakkvevqlsYaigvaepvsisvetfgtekvseeeia 95 
                      Ggp++d+G+tgrkiivdtYgg+++hgggafsgKdp+kvDrsaay+ary+akn+vaa++a+kvevq++Yaig a+pvs+ v+tf+t+ v++++i+
       CCG92974.1 242 GGPDADSGVTGRKIIVDTYGGMGRHGGGAFSGKDPSKVDRSAAYMARYIAKNIVAAKIANKVEVQIAYAIGKADPVSVAVDTFETGLVEDQKIE 335
                      9********************************************************************************************* PP

                      HHHHHH----HHHHHHHHTTTSS--TGGGSS-SSS--....T-TTS. CS
  S-AdoMet_synt_C  96 eivkevfdlrpaaiieeldLkkpiykktaayghfgre....elpwek 138
                      ++++evf l+pa+iieel+L +piy+k+++yghfgr+     + wek
       CCG92974.1 336 RAIREVFRLKPAEIIEELNLLRPIYSKITNYGHFGRNdefdIFCWEK 382
                      ************************************86443348886 PP

>> S-AdoMet_synt_M  S-adenosylmethionine synthetase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   0.0   1.2e-50   5.4e-47       1     120 []     122     239 ..     122     239 .. 0.97
   2 ?   -0.3   0.0      0.27   1.2e+03      48      70 ..     297     320 ..     279     358 .. 0.58

  Alignments for each domain:
  == domain 1  score: 159.0 bits;  conditional E-value: 1.2e-50
  S-AdoMet_synt_M   1 eigAgDqGimfGYAtdeteelmPlpillahklaerlaelrkegeleylrpDaKsqvtveYeeelkpvrvdtvvistqhdeevsqeklredlkek 94 
                      ++gAgDqG+mfG+A++et+elmP+pi++ah+l++rlaelrk++ +++lrpD+K+qv++ Y e++kp+rv+++v+stqh+eevs+++++e +k++
       CCG92974.1 122 DQGAGDQGMMFGFACTETPELMPAPISFAHRLSRRLAELRKKEGCPWLRPDGKTQVSLYY-EDNKPMRVEAIVVSTQHTEEVSNKEIEEIIKKE 214
                      58***************************************999****************.599****************************** PP

  S-AdoMet_synt_M  95 vikkvlkeelldekktkllinptGkF 120
                      vi+k+++ee+l++ kt ++inptG+F
       CCG92974.1 215 VIQKAIPEEFLHK-KTVFYINPTGRF 239
                      ******9998866.6**********9 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.27
  S-AdoMet_synt_M  48 lrpDaKsqvtveYee.elkpvrvd 70 
                       +  +K +v++ Y   +  pv+v 
       CCG92974.1 297 AKIANKVEVQIAYAIgKADPVSVA 320
                      455568888888831233343332 PP

>> S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.3   7.3e-42   3.3e-38       1      99 []       4     102 ..       4     102 .. 0.99
   2 ?   -0.7   0.0      0.51   2.3e+03      19      48 ..     200     229 ..     187     235 .. 0.64
   3 ?   -2.0   0.1       1.3   5.8e+03      25      40 ..     294     309 ..     284     342 .. 0.50

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 7.3e-42
  S-AdoMet_synt_N   1 kylftsesVseGHPDkvadqisdaildailkedpkarvacetlvttglvvvageittkakvdiekivrevikeigYekeelgfdaktcevlval 94 
                      +y+f+sesV+eGHPDkv+d+isd++ld++l++d+ +rvacetlv+++lvv+ageittka++d+ kiv++++++igY++ +  f  ++++++ a+
       CCG92974.1   4 SYVFASESVTEGHPDKVCDTISDTVLDHCLQQDKFSRVACETLVKENLVVLAGEITTKANLDYIKIVKDTVRQIGYNDPKSLFYPEKLHIVCAI 97 
                      589******************************************************************************************* PP

  S-AdoMet_synt_N  95 eeqsp 99 
                      ++qsp
       CCG92974.1  98 SKQSP 102
                      ****7 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.51
  S-AdoMet_synt_N  19 dqisdaildailkedpkarvacetlvttgl 48 
                      +++s++ +++i+k++  ++   e ++++++
       CCG92974.1 200 EEVSNKEIEEIIKKEVIQKAIPEEFLHKKT 229
                      456666666666666666665555555555 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.3
  S-AdoMet_synt_N  25 ildailkedpkarvac 40 
                      i+ a +++  + ++a 
       CCG92974.1 294 IVAAKIANKVEVQIAY 309
                      4444444443333332 PP

>> AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synthetase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.2   0.00011      0.51      24      43 ..      12      31 ..       2      63 .. 0.77
   2 ?   -1.2   0.0      0.15   6.8e+02      84     141 ..      51     105 ..      39     143 .. 0.77
   3 !    8.3   2.1    0.0002       0.9     251     380 ..     217     344 ..     188     356 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00011
                     E-TTSHHHHHHHHHHHHHHH CS
  AdoMet_Synthase 24 KGiGHPDsiaDgiaeavsra 43
                        GHPD+++D+i+++v  +
       CCG92974.1 12 VTEGHPDKVCDTISDTVLDH 31
                     567************99654 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.15
                      EEEEEEEEEEEE.EEE--HHHHHHHHHHHHHHHH-SS--TTTSEEEEEEEEEEEEHHH CS
  AdoMet_Synthase  84 eillsgratkevegekipveeialeaakeylkenlraldlekdvivdvklgkgsadLk 141
                       ++l+g  t+   + ++++ +i+++++++   +  + l   +++ + + + k s d+ 
       CCG92974.1  51 LVVLAGEITT---KANLDYIKIVKDTVRQIGYNDPKSLFYPEKLHIVCAISKQSPDIA 105
                      5667777776...567888899999999998888888888889999999999998886 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0002
                      EEEE-TT-BGGGTB--EESSSSGGG...TT--EETTSS--TTSSB-TTS----S--TTS-TTT-HHHHHHHHHHHHHHHHHHH-TTEEEEEEEE CS
  AdoMet_Synthase 251 evevNtaDkkeeesvyltvtGtsaE...egDdGsvGRGNRvnGlitpnrpmslEAaaGKNPvsHvGKiYnvlaneiakeiveevegvkevyvrl 341
                      + ++     ++++++y+  tG  +    ++D+G +GR   v     + r  +  A +GK P s v +    +a+ iak+iv+  +  ++v+v++
       CCG92974.1 217 QKAIPEEFLHKKTVFYINPTGRFVAggpDADSGVTGRKIIVDTYGGMGRH-GGGAFSGKDP-SKVDRSAAYMARYIAKNIVA-AKIANKVEVQI 307
                      44444444456788888888865431226799999998888877777775.5679******.679***************98.566799***** PP

                      EE-TTSBTTS-SEEEEEEEESSS---HHSHHHHHHHHHH CS
  AdoMet_Synthase 342 lsqiGkpidePlvasvqvilekgvsleevekeveeiide 380
                         iGk+  +P  ++v+   +  v+ +++e+ ++e+++ 
       CCG92974.1 308 AYAIGKA--DPVSVAVDTFETGLVEDQKIERAIREVFRL 344
                      ******6..9********999999999*****9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2790.01
//
Query:       CCG92975.1  [L=153]
Description: ACT domain-containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.016   14.9   1.4       0.15   11.8   0.2    2.5  3  ACT             ACT domain
      0.032   14.0   0.1          1    9.2   0.0    2.2  2  Thr_dehydrat_C  C-terminal regulatory domain of Threonine deh
      0.093   12.2   0.6        7.7    6.1   0.0    3.4  4  DUF3343         Protein of unknown function (DUF3343)


Domain annotation for each model (and alignments):
>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   2.6e-05      0.15       4      54 ..      18      64 ..      15      73 .. 0.83
   2 ?   -1.4   0.0      0.36   2.2e+03      20      27 ..      69      76 ..      68      76 .. 0.89
   3 ?    1.2   0.1     0.056   3.3e+02      14      28 ..      94     108 ..      94     108 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.6e-05
                EEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHH CS
         ACT  4 rvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeed 54
                 v+++++ G L ++ ++l  + i i+  ++  + +     +++ +vvd+ +
  CCG92975.1 18 TVFMENKAGRLLELVRLLESHEIHIIGFTILDTSE----ASTIRLVVDDPQ 64
                589******************************66....666666666655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.36
                HHHHTTSE CS
         ACT 20 aladrgiN 27
                +la++gi+
  CCG92975.1 69 ILAENGIS 76
                89****98 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.056
                 HHHHHHHHHHTTSEE CS
         ACT  14 LarvfgaladrgiNi 28 
                 L +v+++l ++ iNi
  CCG92975.1  94 LRKVLTVLLQAEINI 108
                 789***********9 PP

>> Thr_dehydrat_C  C-terminal regulatory domain of Threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.016        94      13      44 ..      17      47 ..       8      72 .. 0.77
   2 ?    9.2   0.0   0.00017         1      11      62 ..      81     132 ..      72     147 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.016
                    XXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX CS
  Thr_dehydrat_C 13 lavefpeqpGaLkkFlellggrndiTlfeYrk 44
                    ++v++  ++G L++ + ll ++  i  + ++ 
      CCG92975.1 17 FTVFMENKAGRLLELVRLLESHE-IHIIGFTI 47
                    78999999999999999999988.65555555 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00017
                     XXXXXXXXXXXXXXXXXXXXXXXXX.XX.XXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C  11 allavefpeqpGaLkkFlellggrndiT.lfeYrkagekngkvLvgvevsqae 62 
                      l+a e+p++++ L+k l  l++   i   f+Y +    +gk+  + +v+++e
      CCG92975.1  81 SLIALELPQSAEDLRKVLTVLLQAE-INiYFSYPFLTRPYGKAVLALRVEDEE 132
                     5899***************999988.65279****999999999999999765 PP

>> DUF3343  Protein of unknown function (DUF3343)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.2   1.2e+03      52      66 ..      30      44 ..      22      46 .. 0.79
   2 ?    6.1   0.0    0.0013       7.7      44      66 ..      57      79 ..      54      82 .. 0.84
   3 ?    1.1   0.0     0.044   2.6e+02      47      64 ..      91     108 ..      83     113 .. 0.83
   4 ?    0.0   0.1     0.097   5.8e+02      41      61 ..     124     142 ..     123     146 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.2
     DUF3343 52 easrllseaeipyeg 66
                e+ rll+ +ei++ g
  CCG92975.1 30 ELVRLLESHEIHIIG 44
                678999999999876 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0013
     DUF3343 44 rvneedieeasrllseaeipyeg 66
                r+  +d + a+++l+e++i+y++
  CCG92975.1 57 RLVVDDPQNARKILAENGISYTE 79
                555678899************97 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.044
     DUF3343  47 eedieeasrllseaeipy 64 
                  ed+ +++++l +aei +
  CCG92975.1  91 AEDLRKVLTVLLQAEINI 108
                 69999**********986 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.097
     DUF3343  41 lalrvneedieeasrllseae 61 
                 lalrv  ed+e a  +l +++
  CCG92975.1 124 LALRV--EDEELAISVLLRNN 142
                 68888..66666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.50
# Mc/sec: 919.14
//
Query:       CCG92976.1  [L=411]
Description: Aspartate/aromatic aminotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-63  214.5   0.0    2.8e-63  214.3   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    5.9e-12   45.6   0.1    9.6e-12   44.9   0.1    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    6.5e-07   28.6   0.0    3.3e-06   26.3   0.0    1.8  2  Aminotran_5      Aminotransferase class-V
     0.0059   15.2   0.0      0.009   14.6   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
      0.024   13.9   0.0      0.086   12.1   0.0    1.7  2  Beta_elim_lyase  Beta-eliminating lyase
       0.15   10.7   0.0       0.21   10.3   0.0    1.2  1  SepSecS          O-phosphoseryl-tRNA(Sec) selenium transferas


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.3   0.0   9.4e-67   2.8e-63       1     363 []      47     397 ..      47     397 .. 0.95

  Alignments for each domain:
  == domain 1  score: 214.3 bits;  conditional E-value: 9.4e-67
                    SEEEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EE CS
  Aminotran_1_2   1 tdvinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdei 96 
                    tdvi Lg++e+++d    t+  +++a++   +  ++ + y+ + gl el++ +a+++++  ++++++  +++v+ G +++++ + +++ ++p de+
     CCG92976.1  47 TDVISLGIGEPDFD----TPWMIREAAIY--SLEKGETGYTSNLGLIELRKLIAQYVSKLIGVDYNPYEEILVTVGVSEGLDCALRAI-IDPFDEV 135
                    689***********....*********99..77788899999999*************999***************************.******* PP

                    EEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTT CS
  Aminotran_1_2  97 lvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYag 192
                    ++++p+y sy + + l++g  v +++ ++++f+ld  a+e++++       ktk i+++ p NPtG++ ++e+le++++la k+ l++++De+Ya+
     CCG92976.1 136 IIHQPSYVSYVPLVVLAHGVPVIVETLEKDGFQLDPVAVEKKITP------KTKAIILNFPTNPTGSIENEEKLEAIAQLACKHDLYVISDEIYAE 225
                    *********************************************......********************************************* PP

                    CBSSSSHTHHHHGGSTTSTT.EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 193 fvfgsldavatranveeepn.llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrr 285
                    ++++ + + + ++ +++  +  l + ++sKaf+++G+R+Gy++g +++++++ k+++  +   ss++q+a+ +al + ++   ++e+m++++  rr
     CCG92976.1 226 LMYEGT-HRS-IVALDRMKErSLFLHGFSKAFSMTGFRIGYACGPKEWIEAMMKIHQYSILcaSSIAQQAAIEALLHGKK---DMEQMVEEYRLRR 316
                    ****65.233.556666555679*********************************9999999**************997...9************ PP

                    HHHHHHHHHSTEEEECCSCSSEEEEEETHH..CHHHHHHHHHHTCTEEEEEGGGGTS..TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 286 kelrdeLaelglkvlasqsgmflltdlsae..takelskkLleevgvyvtpgtsftv..pgrlRitvAglteeeleelveal 363
                     +l ++L ++gl    ++++++++  +++   + ke++  Ll+e gv+++pg+ f+   +g +R ++ ++  e+le +v+++
     CCG92976.1 317 NFLWKNLSSIGLVGNLPKGTFYYFPSIRHFglSSKEFCYRLLQEGGVALVPGSAFGQggEGYVRCSF-ATRFEDLEIAVRRI 397
                    **************99************9999***********************************.999999*9999997 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.1   3.2e-15   9.6e-12      48     144 ..     118     220 ..     104     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 3.2e-15
                      HHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B.-TTTSSB-GGGCGGG--TTEEEEE...EB-GGGB--...-HHHHHHHH CS
  DegT_DnrJ_EryC1  48 taAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDv.dpdtynidpaaieaaitertkaIl...pVhlyGqva...dmdalkaia 134
                      +++l  aLra+ ++p deVI+ + ++v+ +  v+ +  +pv v+  ++d +++dp a+e++it++tkaI+   p +  G +     ++a+ ++a
       CCG92976.1 118 SEGLDCALRAI-IDPFDEVIIHQPSYVSYVPLVVLAHGVPVIVETlEKDGFQLDPVAVEKKITPKTKAIIlnfPTNPTGSIEneeKLEAIAQLA 210
                      57888999997.8999***************************97266779******************7555799999887444799999999 PP

                      HHCT-EEEEE CS
  DegT_DnrJ_EryC1 135 akhglkvieD 144
                       kh+l+vi+D
       CCG92976.1 211 CKHDLYVISD 220
                      9********9 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.1e-09   3.3e-06      51     175 ..      96     220 ..      86     224 .. 0.81
   2 ?   -0.2   0.0      0.13   3.8e+02     254     360 ..     284     384 ..     267     392 .. 0.69

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.1e-09
                  HHHHHHT-STG..GGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTS.CBEGGGHHHH--TTEEEEEE CS
  Aminotran_5  51 kvaelinaese..eeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeeg.eldldelekllnektklvai 145
                   v +li+++ +  eei++t G +e++ ++++++   ++p de+++ +  + + + p + la  +g+ v v +l+++g +ld+ ++ek++++ktk++++
   CCG92976.1  96 YVSKLIGVDYNpyEEILVTVGVSEGLDCALRAI---IDPFDEVIIHQPSYVSYV-PLVVLA--HGVPVIVETLEKDGfQLDPVAVEKKITPKTKAIIL 187
                  57788888765448*******************...9***************99.999999..566666666666653799***************** PP

                  ESBETTTTEB--...HHHHHHHHHHTT-EEEEE CS
  Aminotran_5 146 thvsnvtGtiqp...veeigklakkkgalvlvD 175
                  +   n tG i+    +e+i++la k++ +v+ D
   CCG92976.1 188 NFPTNPTGSIENeekLEAIAQLACKHDLYVISD 220
                  ********9876111556666666677777666 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.13
                  -HHHHHHHHHHHHHH..HCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHH.HHHHHHTTEEEEEE-TTTHHHHHH CS
  Aminotran_5 254 nvagiiglgaaleyl..eeigleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvhaedv.atlLdeegIavrsGhhcaqplmkr 348
                   +a+ i+ +aa+e l   + ++e++ ++ +  ++ l + l+s++ v ++    +       s+ + g++++++  +lL+e g+a+  G++        
   CCG92976.1 284 LCASSIAQQAAIEALlhGKKDMEQMVEEYRLRRNFLWKNLSSIGLVGNLP---KGTFYYFPSIRHFGLSSKEFcYRLLQEGGVALVPGSAFG------ 372
                  57888888999998777889999999999999999999999999988833...345555555555455544431455555577777777776...... PP

                  TT.S-EEEEE-- CS
  Aminotran_5 349 lalegtvRaSly 360
                   + eg vR S++
   CCG92976.1 373 QGGEGYVRCSFA 384
                  555566666665 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     3e-06     0.009     125     175 ..     169     222 ..     106     228 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3e-06
                      TSHHHHHHHCCTTEEEEEEESS-TTTT----...HHHHHHHHHHTT-EEEEEGT CS
  Cys_Met_Meta_PP 125 sdleelekaikentklvylEtptnpllkvvD...iekiaklakkagvlvvvDnt 175
                       d+ ++ek+i+++tk++ l  ptnp+ ++     +e+ia+la k+++ v+ D  
       CCG92976.1 169 LDPVAVEKKITPKTKAIILNFPTNPTGSIENeekLEAIAQLACKHDLYVISDEI 222
                      567799********************9886533389999999999999999876 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.9e-05     0.086      61     167 ..     122     220 ..      61     222 .. 0.76
   2 ?   -0.7   0.0      0.22   6.7e+02     200     254 ..     291     402 ..     228     410 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.9e-05
                      HHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHH CS
  Beta_elim_lyase  61 sillkillqrgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelreva 154
                        +l++++ + +evi+++p+ +       +a+   v + +l+++   ++d+ ++e++i++      k+k+i+l   +n   G +   e+l+++a
       CCG92976.1 122 DCALRAIIDPFDEVIIHQPSYVSYVPLVVLAHGVPVIVETLEKDG-FQLDPVAVEKKITP------KTKAIILNFPTNP-TGSIENEEKLEAIA 207
                      567788888888888888888888877777777777777777777.89999999999999......5889999998884.7************* PP

                      HHHHHCT-EEEEE CS
  Beta_elim_lyase 155 aiakkygiplhlD 167
                      ++a k+++ ++ D
       CCG92976.1 208 QLACKHDLYVISD 220
                      ********99988 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.22
                      T--SS-EEEEE-HH....HHHHHHHHHHHHT---SSTHHHHH.................................................... CS
  Beta_elim_lyase 200 llanvGgvlafrddeledylaerveqrkylggglrqagvlaa.................................................... 241
                        a ++++l +++d +e+ ++e +  r+ l ++l++ g+++                                                     
       CCG92976.1 291 QQAAIEALLHGKKD-MEQMVEEYRLRRNFLWKNLSSIGLVGNlpkgtfyyfpsirhfglsskefcyrllqeggvalvpgsafgqggegyvrcsf 383
                      34668888888888.7778888777788888888888877777777777777777777777666666655555555555555555555555555 PP

                      ........HHHHHHHHSST CS
  Beta_elim_lyase 242 ......leagiraleegla 254
                            le ++r +e +l+
       CCG92976.1 384 atrfedLEIAVRRIESWLK 402
                      5555555555555555555 PP

>> SepSecS  O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0     7e-05      0.21     125     279 ..     155     311 ..     135     326 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7e-05
                 EEEE-EEECTTEEEEHHHHHHHHHHCCTCCCEEEEEECSSTTTTB----HHHHHHHHHCCT--EEEEGCCC.CT-HHHHHHHHHHHHHTTC-EECCCHC CS
     SepSecS 125 ialvekvlegDelitdvedveeiiekkreevilavlstlsffaprspDdvkeiakiCaeydvPhlvNgAYa.iqsekyieklkkalkvGRvdvvvksld 222
                 + ++ ++le+D  + d+ +ve++i+ k +  il   + +++   +    +++ia++  ++d+  +    Ya +  e + + + +  ++     +++   
  CCG92976.1 155 VPVIVETLEKDGFQLDPVAVEKKITPKTKAIILNFPTNPTGSIENEEK-LEAIAQLACKHDLYVISDEIYAeLMYEGTHRSIVALDRMKERSLFLHGFS 252
                 446667899*****************9**************9999876.*************9999999984444555555555555555567777777 PP

                 HCCCEECCHCCCCESSCH.CCCCCHC..CCHCHCTSCHCCCCCCCHHHCCHHHCCHHHHH CS
     SepSecS 223 knllvpvGgaiiaasdes.fikeisk..eypgrasaapskdvlisllllGskaykkllke 279
                 k + +  G  i +a +++  i+ + k  +y+    ++  +++ i+ ll G k+ +++++e
  CCG92976.1 253 KAFSM-TGFRIGYACGPKeWIEAMMKihQYSILCASSIAQQAAIEALLHGKKDMEQMVEE 311
                 77754.466666666653145555441134444444445666777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 2680.84
//
Query:       CCG92977.1  [L=169]
Description: Transcriptional regulator, Lrp/AsnC family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-14   53.8   0.0    2.2e-14   53.2   0.0    1.3  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    3.8e-07   29.6   0.3    1.2e-06   27.9   0.5    1.7  2  HTH_24          Winged helix-turn-helix DNA-binding
    6.2e-05   22.8   0.3     0.0001   22.1   0.3    1.4  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    0.00056   19.8   0.0      0.002   18.1   0.0    1.9  2  HTH_Crp_2       Crp-like helix-turn-helix domain
    0.00058   19.7   0.1     0.0013   18.6   0.1    1.6  1  MarR            MarR family
  ------ inclusion threshold ------
      0.017   15.0   0.1      0.095   12.6   0.0    2.0  2  MarR_2          MarR family
      0.028   14.2   0.0      0.071   12.9   0.0    1.6  2  HTH_IclR        IclR helix-turn-helix domain
      0.049   13.5   0.0       0.22   11.3   0.1    2.1  3  HTH_23          Homeodomain-like domain
      0.081   12.8   0.2       0.17   11.8   0.2    1.6  1  HTH_5           Bacterial regulatory protein, arsR family
       0.14   11.9   0.1       0.32   10.7   0.1    1.6  1  Crp             Bacterial regulatory proteins, crp family


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   1.2e-17   2.2e-14       3      75 .]      77     149 ..      75     149 .. 0.91

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 1.2e-17
                     EEE-GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEEE CS
  AsnC_trans_reg   3 vslepghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivlet 75 
                     v+++p++   ++++ +++a ++eV++c+ ++G yd+l+    ++l++   f++ekla+lpgv +t t++ l+t
      CCG92977.1  77 VKITPERGGGFDKLSKRIAGFEEVTSCFLMSGGYDLLVFLEGESLKEVALFVSEKLATLPGVISTATHFMLKT 149
                     5555444559************************************************************996 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.5   6.9e-10   1.2e-06       7      47 ..      14      54 ..      10      54 .. 0.95
   2 ?   -2.1   0.0       1.7     3e+03      33      47 ..     142     156 ..     140     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 6.9e-10
      HTH_24  7 kILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                +I +lL+kn+r+s++++A +lg+S+  +   lk+Le+e +I
  CCG92977.1 14 DIVRLLEKNARLSISDIASALGISVEETAGLLKELEKEKFI 54
                799**********************************9877 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.7
      HTH_24  33 tvnrrlkrLeeeGlI 47 
                 +++  lk  +e+G+I
  CCG92977.1 142 ATHFMLKTYKEQGII 156
                 667789999999998 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.3   5.6e-08    0.0001       8      34 ..      15      41 ..      11      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5.6e-08
  HTH_AsnC-type  8 ILeaLqedaRisyaeLAervGlSestv 34
                   I+++L+++aR+s +++A ++G+S ++ 
     CCG92977.1 15 IVRLLEKNARLSISDIASALGISVEET 41
                   99*********************8876 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-06     0.002      20      64 ..      23      65 ..       4      68 .. 0.83
   2 ?   -1.3   0.0       1.2   2.2e+03      27      51 ..     132     156 ..     116     165 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
                EEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEETEEEEES-HHH CS
   HTH_Crp_2 20 lpltqeelAsmlGltretvsrilseLkreglisrgrririldlea 64
                 +l+  ++As lG++ e +  +l+eL++e+ i   +  +i d+e+
  CCG92977.1 23 ARLSISDIASALGISVEETAGLLKELEKEKFILAYK--TIFDPEK 65
                589999************************998544..5777776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
                 HHHHTTSSHHHHHHHHHHHHHTTSE CS
   HTH_Crp_2  27 lAsmlGltretvsrilseLkregli 51 
                 lA + G+    +  +l+  k++g+i
  CCG92977.1 132 LATLPGVISTATHFMLKTYKEQGII 156
                 5555555555556678888888887 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   7.4e-07    0.0013       8      47 ..      15      54 ..       8      58 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.4e-07
                HHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR  8 iLrilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                i+r+l+ +  ls+s++a++lg+s   +  +l++Lek+ +i
  CCG92977.1 15 IVRLLEKNARLSISDIASALGISVEETAGLLKELEKEKFI 54
                889999999***************************9998 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.12   2.1e+02      31      47 ..       5      21 ..       3      23 .. 0.89
   2 ?   12.6   0.0   5.3e-05     0.095      11      51 ..      16      54 ..       9      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.12
                HTSSHHHHHHHHHHHHH CS
      MarR_2 31 lglsksavsrilkrLva 47
                l++ ++ +s i++ L++
  CCG92977.1  5 LKVNPQLISDIVRLLEK 21
                7899*********9997 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.3e-05
                HHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2 11 LaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLv 51
                   L  + +  l+++++a +lg+s   +  +lk+L++  ++
  CCG92977.1 16 VRLLEKNAR--LSISDIASALGISVEETAGLLKELEKEKFI 54
                556667776..*************************99887 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     4e-05     0.071       8      48 ..      15      54 ..      13      55 .. 0.88
   2 ?   -2.8   0.0       3.2   5.8e+03      33      46 ..     141     154 ..     132     156 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4e-05
                HHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR  8 iLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyv 48
                i ++l++ ++ l++s++A ++g++   + +lL+ L++++++
  CCG92977.1 15 IVRLLEKNAR-LSISDIASALGISVEETAGLLKELEKEKFI 54
                6666666666.9*************************9986 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.2
                 HHHHHHHHHHHHTT CS
    HTH_IclR  33 StvhRlLqtLvelG 46 
                 +++h +L+t  e+G
  CCG92977.1 141 TATHFMLKTYKEQG 154
                 56888888877776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00013      0.22      10      31 ..      15      38 ..      13      39 .. 0.91
   2 ?   -3.3   0.0         5     9e+03      15      24 ..     116     125 ..     113     125 .. 0.82
   3 ?   -3.2   0.0       4.6   8.2e+03      38      46 ..     147     155 ..     146     156 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
      HTH_23 10 illllae..GlsvreIAreLgvsr 31
                i++ll +  +ls+++IA +Lg+s 
  CCG92977.1 15 IVRLLEKnaRLSISDIASALGISV 38
                789999889*************96 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5
      HTH_23  15 aeGlsvreIA 24 
                 +eG s +e+A
  CCG92977.1 116 LEGESLKEVA 125
                 5799999998 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.6
      HTH_23  38 lkryreeGl 46 
                 lk+y+e G+
  CCG92977.1 147 LKTYKEQGI 155
                 789988886 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   9.6e-05      0.17       6      29 ..      14      38 ..      11      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.6e-05
                HHHHHHTT.SSEEHHHHHHHHTS-H CS
       HTH_5  6 kILklLae.gelcvcelaeelglsq 29
                +I++lL++   l+++++a +lg+s 
  CCG92977.1 14 DIVRLLEKnARLSISDIASALGISV 38
                79******666************95 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00018      0.32       2      32 .]      24      54 ..      24      54 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
                E--HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
         Crp  2 pmSRqdIAdylGlTrETVSRlLtrLrekGLI 32
                ++S  dIA +lG ++E    lL+ L++++ I
  CCG92977.1 24 RLSISDIASALGISVEETAGLLKELEKEKFI 54
                57889**********97777********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1300.35
//
Query:       CCG92978.1  [L=322]
Description: Ribose-phosphate pyrophosphokinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-50  168.7   0.0    2.2e-49  166.2   0.0    2.0  2  Pribosyltran_N  N-terminal domain of ribose phosphate pyropho
    5.2e-21   75.5   0.6    5.2e-21   75.5   0.6    2.1  3  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
    2.1e-11   43.6   1.0    8.2e-11   41.7   0.8    2.0  2  Pribosyltran    Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.2   0.0   3.7e-53   2.2e-49       1     116 []       8     124 ..       8     124 .. 0.99
   2 ?   -0.1   0.0      0.14   8.5e+02      44      60 ..     212     228 ..     193     252 .. 0.76

  Alignments for each domain:
  == domain 1  score: 166.2 bits;  conditional E-value: 3.7e-53
  Pribosyltran_N   1 lkifagssskeLaekiakrlgvelgkakvsrfadgEikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakritaViPylgysrqd 95 
                     lkif+g+++++La kia+++g++lg+a++s f+dgE+ v+++e++rg+dvfi+q++++p+n+nlmell+mida+rrasa+r+taViP++gy+rqd
      CCG92978.1   8 LKIFSGRANPALATKIAQYVGIPLGQATISSFPDGETFVKFNENIRGRDVFIVQPTCPPTNHNLMELLIMIDAARRASAARVTAVIPFYGYARQD 102
                     69********************************************************************************************* PP

  Pribosyltran_N  96 rk.ksrepisaklvaklLeaaG 116
                     rk ++r++i+aklva+lL aaG
      CCG92978.1 103 RKdQPRVSITAKLVANLLVAAG 124
                     **999***************99 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.14
  Pribosyltran_N  44 svrgkdvfiiqslskpv 60 
                     +v g+dv i+ +l++ +
      CCG92978.1 212 DVEGRDVLIVDDLTETA 228
                     68999999999988654 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.1   6.7e+03     103     121 ..     117     135 ..     112     138 .. 0.85
   2 ?   -1.1   0.0      0.28   1.6e+03       6      37 ..     168     199 ..     164     208 .. 0.78
   3 !   75.5   0.6   8.7e-25   5.2e-21      77     183 ..     209     313 ..     203     314 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.1
                     HHHHHHTT--EEEEEEEEE CS
  Pribosyl_synth 103 aevlkerGaykiyvlathG 121
                     a++l + Ga ++ ++  h 
      CCG92978.1 117 ANLLVAAGANRVLAMDLHA 135
                     8899999999999998886 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.28
                     EEEESSGGGHHHHHHHHHHTT-EEEEE----- CS
  Pribosyl_synth   6 vivakspgsakkatsyaerlrlglavihGeqk 37 
                     v+v+ + g +k a++y++ l  gla++  ++ 
      CCG92978.1 168 VVVSPDVGGIKMASTYSQLLGKGLALVVKKRV 199
                     7888888999*********9999998865554 PP

  == domain 3  score: 75.5 bits;  conditional E-value: 8.7e-25
                     EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEEEEE---TTHHHHHHHSS--EEEEESSS--HHHHHT-TTEEEE--HHHHHHHHH CS
  Pribosyl_synth  77 vvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvlathGllssdaprlleesaidevvvtntipheiqklrcskiktvdislllaeair 171
                     vvGdv+Gr  +ivddl + + ++v+aa +lk+ Ga +iy+ ++h +l +    +l +s ++e++ tn++p  +  ++  ++  +d++ ll eai+
      CCG92978.1 209 VVGDVEGRDVLIVDDLTETAGTVVSAATILKKMGARRIYAGISHAVLNQIGIGRLRSSHLEELITTNSVPVPV--VEGVRVTVLDVAPLLGEAIK 301
                     8*********************************************************************988..999***************** PP

                     HHHHT---TT-S CS
  Pribosyl_synth 172 rihngesmsylf 183
                     rih g s++ lf
      CCG92978.1 302 RIHTGMSVTSLF 313
                     *********999 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.26   1.6e+03      43      93 ..      19      60 ..      18      61 .. 0.58
   2 !   41.7   0.8   1.4e-14   8.2e-11      27     118 ..     163     246 ..     154     257 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.26
                  HHHHHHHHSTT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE CS
  Pribosyltran 43 fakiladeLevplayvrkvkyrpdgseeaargssdesrlledpagkkVliV 93
                  +a+++a+++++pl    ++++ ++ +  ++          e+++g+ V+iV
    CCG92978.1 19 LATKIAQYVGIPLGQATISSFPDGET-FVK--------FNENIRGRDVFIV 60
                  57778888888887776666533222.222........3456667777666 PP

  == domain 2  score: 41.7 bits;  conditional E-value: 1.4e-14
                   -GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEE CS
  Pribosyltran  27 ngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpeev 118
                   n    vvv ++ gG+ +a+ +++ L+  la v k+++++  +e             +d++g+ VliVDD+  t+gT+  a+ +Lk+ g+ ++
    CCG92978.1 163 NLLDLVVVSPDVGGIKMASTYSQLLGKGLALVVKKRVDAYHTEADF--------VVGDVEGRDVLIVDDLTETAGTVVSAATILKKMGARRI 246
                   44567*************************9999999998888876........89********************************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2470.32
//
Query:       CCG92979.1  [L=277]
Description: Zn-dependent hydrolase, glyoxylase family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1932.73
//
Query:       CCG92980.1  [L=186]
Description: Elongation factor P [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-24   83.4   0.1    1.1e-23   82.7   0.1    1.4  1  Elong-fact-P_C  Elongation factor P, C-terminal
    3.4e-21   75.0   0.3    1.2e-18   66.9   0.1    2.3  2  EFP             Elongation factor P (EF-P) OB domain
    8.2e-18   64.2   0.0      2e-17   63.0   0.0    1.7  1  EFP_N           Elongation factor P (EF-P) KOW-like domain


Domain annotation for each model (and alignments):
>> Elong-fact-P_C  Elongation factor P, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.1   1.9e-27   1.1e-23       1      56 []     130     185 ..     130     185 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 1.9e-27
                     EEEEEEE--SSS--SSSSTTEEEEEETTS-EEEEETT--TT-EEEEETTTTEEEEE CS
  Elong-fact-P_C   1 VeleVvetepgvkGdtasggtKpatletGaevqVPlFIneGdkIkvdTrtgeYvsR 56 
                     V+l+Vve+ +gvkGd+a++++Kpa+letG+ +qVPlFI+eG+ +kv+T +g+Y+sR
      CCG92980.1 130 VVLKVVEAPEGVKGDSATNVMKPAILETGLCIQVPLFIKEGELVKVSTTDGKYLSR 185
                     79*****************************************************9 PP

>> EFP  Elongation factor P (EF-P) OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.1   1.9e-22   1.2e-18       1      52 [.      69     120 ..      69     121 .. 0.96
   2 !    6.2   0.0    0.0018        11      36      52 ..     165     181 ..     161     183 .. 0.89

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 1.9e-22
                 EEEEEEEEETTEEEEEETTT--EEEEEHHHHTTGCGG--TT-EEEEEEETTE CS
         EFP   1 remqylYkdgdeyvFMdnetYeqielpkeqlgdaakfLkEgmevtvllyege 52 
                 r ++y+Y++g+++vFMd+etYe +++p+e++g a++fLkE++ v++l+ ++ 
  CCG92980.1  69 RRCEYSYREGNSFVFMDPETYETFSVPEEMVGKAKDFLKENQPVDLLFADDT 120
                 679*********************************************9985 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0018
                 GG--TT-EEEEEEETTE CS
         EFP  36 kfLkEgmevtvllyege 52 
                  f+kEg+ v+v++ +g+
  CCG92980.1 165 LFIKEGELVKVSTTDGK 181
                 59*************98 PP

>> EFP_N  Elongation factor P (EF-P) KOW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   3.3e-21     2e-17       2      58 .]       5      61 ..       4      61 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 3.3e-21
                GGG--TT-EEEETTEEEEEEEEEEEEETTS--EEEEEEEETTTS-EEEEEEETT-EE CS
       EFP_N  2 aselkkGlvieidgklyvVlefehvkpGkGqafvrvklknlrtGakvektfkagdkv 58
                as++ kG++i+++g +++Vl++ h +pG+ +afv++ l+nl+tG+ + ++f + dkv
  CCG92980.1  5 ASDIGKGQAIRHNGAICLVLDTMHRTPGNLRAFVQMTLRNLKTGKSFVERFGSQDKV 61
                9******************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1376.01
//
Query:       CCG92981.1  [L=323]
Description: Arabinose 5-phosphate isomerase and CBS domains [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-28   99.6   0.4      2e-28   98.9   0.4    1.4  1  SIS       SIS domain
    2.6e-13   50.2   1.5    3.3e-05   24.2   0.4    2.7  2  CBS       CBS domain
     0.0012   18.9   0.2       0.61   10.1   0.1    2.4  2  SIS_2     SIS domain


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.4   3.3e-32     2e-28       5     130 ..      43     170 ..      39     171 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 3.3e-32
                 SSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEE CS
         SIS   5 akriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlaly 103
                  ++i+++G G+s++i++++a++l ++g + v+ ++  +++ + l++++++d vi++s+sget + +++++++k+    +++IT++++s+la+++dl+l 
  CCG92981.1  43 NRKIVITGVGKSGHIGRKIAATLTSTGAPSVVLDAVNAFHGD-LGMVNKGDAVIALSYSGETEEILRLIPHLKRIATSLVSITGNENSTLAKNSDLILN 140
                 579***********************************9999.******************************************************** PP

                 EEEECHC...SSSHCHHHHHHHHHHHHHHH CS
         SIS 104 inaepet...lvastksltaqlaaldalav 130
                 +++++e+   ++a+t+s+ta+l+++da+a+
  CCG92981.1 141 VRVSREAcplNLAPTSSTTAMLVLGDAIAM 170
                 **************************9875 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0     6e-09   3.6e-05       1      53 [.     200     254 ..     200     257 .. 0.87
   2 !   24.2   0.4   5.5e-09   3.3e-05       2      52 ..     268     318 ..     263     322 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 6e-09
                 HHHHSBS..SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHH CS
         CBS   1 Vgdimtr..dvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllr 53 
                 Vgdim++  ++v++  ++ ++eal+l   k+ +++ VV+++ k++Gi+t  D +r
  CCG92981.1 200 VGDIMRPlpQIVVLEAEAKVKEALKLWNIKRAGAVVVVNSERKVIGIFTHGDFVR 254
                 89**8888899***************952446899778*999*********9987 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 5.5e-09
                 HHHSBSSCEEEETTSBHHHHHHHHHHHT.SSEEEEEETTTBEEEEEEHHHHH CS
         CBS   2 gdimtrdvvtvppdttleealelmrekg.vsrlPVVdedgklvGivtlrDll 52 
                 g +mt+++vtv+ d    e+l+ + e++ +  l VVde  k+vG++   Dl+
  CCG92981.1 268 GNVMTKNPVTVRVDKLAVEVLNVF-EHNkIEDLIVVDEAYKVVGLIDSQDLA 318
                 679*********************.6666*9**9998666*******99996 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1    0.0001      0.61       8      59 ..      16      67 ..      11      88 .. 0.83
   2 !    6.8   0.0    0.0011       6.4     101     138 .]      88     125 ..      76     125 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0001
                HHHHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT- CS
       SIS_2  8 eilerivetqaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaragg 59
                + l++++++  ++ e+ +e++  ++ +++k+++ G G S  +  ++aa + +
  CCG92981.1 16 DALRTVQKQLDSSFEQTIEVLERTILANRKIVITGVGKSGHIGRKIAATLTS 67
                56889999*******************************9988888887765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0011
                 --TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2 101 lkpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                 +++gD+ + +S sG+ + ++ ++ + k++   ++ +t+
  CCG92981.1  88 VNKGDAVIALSYSGETEEILRLIPHLKRIATSLVSITG 125
                 689*************************9999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2174.02
//
Query:       CCG92982.1  [L=930]
Description: Magnesium-transporting ATPase, P-type 1 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-35  122.1   0.0    1.8e-35  122.1   0.0    2.3  2  E1-E2_ATPase     E1-E2 ATPase
    3.9e-19   69.8   0.1    6.3e-19   69.1   0.1    1.3  1  Hydrolase        haloacid dehalogenase-like hydrolase
    3.9e-18   64.9   0.1    9.5e-18   63.7   0.1    1.7  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    4.9e-16   59.0   8.4    4.9e-16   59.0   8.4    2.7  3  Cation_ATPase_C  Cation transporting ATPase, C-terminus
      9e-09   35.3   0.0    1.7e-08   34.4   0.0    1.4  1  Cation_ATPase    Cation transport ATPase (P-type)
  ------ inclusion threshold ------
       0.03   14.1   2.5       0.04   13.7   0.0    2.3  3  Hydrolase_3      haloacid dehalogenase-like hydrolase
      0.048   14.1   1.7      0.096   13.1   0.0    2.4  3  HAD              haloacid dehalogenase-like hydrolase
       0.62   10.6   3.5       0.43   11.1   0.6    2.2  2  DUF2418          Protein of unknown function (DUF2418)


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   2.6       4.7     1e+04     120     156 ..     111     147 ..     105     149 .. 0.62
   2 !  122.1   0.0   8.1e-39   1.8e-35       5     181 .]     184     381 ..     180     381 .. 0.96

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 4.7
                   HHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHH CS
  E1-E2_ATPase 120 kvlvpvvlliallvflialllgkslaeallralallv 156
                   +++ p++ll+++l++++  + +k+ + +++ ++++ v
    CCG92982.1 111 SYFNPFALLLTFLALVAGSVGEKESVLIMMIMVVVSV 147
                   6677778888777777776666665444444444444 PP

  == domain 2  score: 122.1 bits;  conditional E-value: 8.1e-39
                   -EEEEE...-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-..................G-TTEE-TT-EEEE- CS
  E1-E2_ATPase   5 ptakvi...rdgteeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvek..................ekgdmvfsGtvvvsg 79 
                   p+a ++   ++ +++e++++++vpGDi++l agd +paD+r++   +  v + +LTGEs+pvek                  +  + ++ Gt+v+sg
    CCG92982.1 184 PEASLVpshESSQVREVPISQIVPGDILQLSAGDMIPADVRLIFTRDlFVSQGVLTGESMPVEKydtvypaslneqkrtdpfSLPNIAYLGTNVISG 280
                   55555556577899*****************************************************************9999************** PP

                   EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHH CS
  E1-E2_ATPase  80 eakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgar 176
                   +a+avV+atge+t++g   ++++   ++ t++   +++++  l  v+ +++ ++fli+ ++++s+ +a+l++la+ v+ +P  Lp++v+ +la ga 
    CCG92982.1 281 TATAVVLATGENTYFGAFSKSLRGY-RTMTSFDVGVNRISWLLLQVIGTLIPVIFLINGFTKGSWMDAFLFSLAVGVGLTPTMLPVIVSGCLARGAL 376
                   ************************9.9*********************************************************************9 PP

                   HHHHT CS
  E1-E2_ATPase 177 rlakk 181
                    l+k+
    CCG92982.1 377 LLSKN 381
                   99885 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.1   2.8e-22   6.3e-19       1     210 []     397     683 ..     397     683 .. 0.73

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 2.8e-22
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHH...................HHCHHHHHHHHHHHHH............HHHHHHHHHETTTE. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxx............xxxxxxxxxxxxxx. RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletg...................sehpigkalvaaakar............sgaltgfatfigrg. 67 
                 ++ ++ Dk+GTLt+ +  +e+ ++    +  ++l ++                    ++  gk+++  + ++            s    +++t    g 
  CCG92982.1 397 MNILCTDKTGTLTHNKIILEKYLDPEGNENEEVLKYAyinsyyqsglrnlldqavlDKKEEGKKFIFHYTKVdeipfdftrrrmSVVAREITT----Gk 491
                 68999***********77777666664444444444444444455544444444888999999997777777566555444433222233333....25 PP

                 ..HHHHTHHHHHHHH...............HCHHHHHHHHHHHHHHCHHHHHH...................TTHHHHHHHHHHTHHBHTTHHHHHHHH CS
                 ..xxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  68 ..ayaigkpewltal...............dippdlgaaigsaqsqgrtvall...................qaralavftiadplkvkpeaaeavasL 130
                    + +g +e + a                di ++  a  ++++s+g  v  +                      +++ +++ dp  +k +a++av++L
  CCG92982.1 492 dlLITKGAVEEMIAIcgsllkdgkvieltpDIKKKALALRDDLNSDGLRVLAVafrelplemtrpvsvndeeGMTLCGFIAFLDP--PKHDAEDAVRAL 588
                 57444444444444444444444455555678888899999999999999999***************988766***********..************ PP

                 HHTTEEEEEEESSEHHHHHHHHHHTT............GGGESEEEEHHCES...........STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 131 kaagievvlltgdnpetaeraanqlG............ddyfdaviasdiet...........vakpspegkvaaireLqgkpeevamVGDgvnDaaal 206
                 k  g+ev ++tgdn+   +r+ + +G            ++  d                    + k sp +k ++ir L+  ++ v + GDg+nDa+al
  CCG92982.1 589 KNYGVEVKIITGDNELVTRRICDWIGlevrgvmrgseiENLTD--------DelitaaekaniFVKMSPLQKARVIRALRTGGHIVGFLGDGINDAQAL 679
                 **************************99987776544333332........1223345557999999************966666************** PP

                 HHTT CS
                 xxxx RF
   Hydrolase 207 aaAg 210
                 ++A+
  CCG92982.1 680 READ 683
                 **98 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.1   4.2e-21   9.5e-18       2      69 .]      61     127 ..      60     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 4.2e-21
  Cation_ATPase_N   2 halsleevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69 
                      ++++l++++++L+ ++++GLt++e++erl+kyG Ne+k+++ +s++ +ll+++ np+ +lL ++alv+
       CCG92982.1  61 SQVPLSDLYTELK-TRPEGLTEKEVEERLEKYGYNEIKQEEIPSWFILLLQSYFNPFALLLTFLALVA 127
                      5789********9.9**************************************************995 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.5         1   2.3e+03      55      82 ..     108     134 ..     100     168 .. 0.50
   2 ?   -1.4   0.4      0.72   1.6e+03     136     169 ..     321     355 ..     297     364 .. 0.65
   3 !   59.0   8.4   2.2e-19   4.9e-16       1     180 [.     752     918 ..     752     920 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1
  Cation_ATPase_C  55 liqgllqalvtllvffltlllfgiseke 82 
                      l+q+ +  ++ ll+f++ +   ++ eke
       CCG92982.1 108 LLQSYFNPFALLLTFLALVA-GSVGEKE 134
                      55555555555555544444.2222222 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.72
  Cation_ATPase_C 136 lllqvlivyvpglnavfgtaplsleew.liallla 169
                      lllqv+ +++p++  + g+++ s+++  l +l+++
       CCG92982.1 321 LLLQVIGTLIPVIFLINGFTKGSWMDAfLFSLAVG 355
                      46777777777665556666655555533344444 PP

  == domain 3  score: 59.0 bits;  conditional E-value: 2.2e-19
  Cation_ATPase_C   1 plplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgisekenklssnyaqtma 94 
                      +lp+s++qiL++nL++Dl  ++ +  +  ++d++ +p +       + ++lr ++i+g +++++ ++++ + ++ fg+++ en   ++ ++t +
       CCG92982.1 752 FLPMSPLQILILNLIYDLS-QTLIPWDRMDEDFIAKPRK-----WEAEGILRFMFIIGPISSVFDYVTYGVMWFVFGANSIEN---QSLFHTGW 836
                      58****************9.999************9776.....3345666677**************************998...689***** PP

  Cation_ATPase_C  95 FitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsleewlialllalvvllvdelvK 180
                      F+   lsq + + ++r+     ++f +    k l+la+++ +++  li y  +++++ g++pl+++ +l++ ++ l +++ ++ vK
       CCG92982.1 837 FVESLLSQSLIVHMIRT---RKIPFIQSIATKPLVLATAVVIVIGHLIPYS-FFGEAAGLVPLPFSYYLWLWGILLTYCITVQTVK 918
                      *****************...5556666678899******************.8*********************999999999988 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   7.5e-12   1.7e-08       8      90 ..     415     509 ..     399     510 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 7.5e-12
  Cation_ATPase   8 f........sensekdevkllGnktEsALlvlaekl....gldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrCth 90 
                    +        +en+e  ++ ++ +   s L +l +++    +++ +++  +++kv eipF+ +r+rmsvv ++ +++k +l++KGA e +++ C++
     CCG92982.1 415 LekyldpegNENEEVLKYAYINSYYQSGLRNLLDQAvldkKEEGKKFIFHYTKVDEIPFDFTRRRMSVVAREITTGKDLLITKGAVEEMIAICGS 509
                    25555555578888899999999999999999999944444444555556*********************99********************86 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3       1.4   3.2e+03      84     159 ..     384     463 ..     379     480 .. 0.66
   2 ?   -1.4   0.0      0.72   1.6e+03      20      72 ..     581     633 ..     577     646 .. 0.72
   3 ?   13.7   0.0   1.8e-05      0.04     209     243 ..     669     703 ..     652     707 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.4
                  HHHHHHHHHHTT.CEEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEE...EES-HHHHHHHHH CS
  Hydrolase_3  84 vkeiikllkenn.veillytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakil...ilkdkekldelek 159
                  v + ++++++ +  +il+ ++ +++++nk   ek+ + e ++++++ ++ + +   ++ + ++l   +l++ke+ ++++ 
   CCG92982.1 384 VTKRLNAIQNIGaMNILCTDKTGTLTHNKIILEKYLDPEGNENEEVLKYAYINSYYQSGLRNLLdqaVLDKKEEGKKFIF 463
                  55666666666655666666666666666677777777777777777777777777777777777765555555555544 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.72
                  HHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEE.ECTTTE CS
  Hydrolase_3  20 tkeaikklkekgikvviATGRslravlpvleelgldlpvialNGali.ddekgk 72 
                  + +a++ lk+ g++v i TG +   ++++ + +gl+     + G+ i + ++++
   CCG92982.1 581 AEDAVRALKNYGVEVKIITGDNELVTRRICDWIGLE-VRGVMRGSEIeNLTDDE 633
                  578999999999999999998888888888887777.22225566665555555 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 1.8e-05
                  EESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE CS
  Hydrolase_3 209 fGDgeNDieMLeaaglgvAmgnaseevkkaAdyvt 243
                   GDg ND + L  a++g+ ++ a + +k+ Ad + 
   CCG92982.1 669 LGDGINDAQALREADVGISVDTAVDIAKESADIIL 703
                  7*******************************986 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       2.3   5.1e+03      29      77 ..      21      69 ..       2      91 .. 0.61
   2 ?   13.1   0.0   4.3e-05     0.096      85     188 .]     573     680 ..     521     680 .. 0.65
   3 ?   -2.0   0.0       1.8     4e+03       2      20 ..     766     786 ..     765     800 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.3
         HAD 29 rlwralreklllalfrellrldraglaelleallaglseelaaelerfv 77
                r wra+  +l+l   r + r ++a l+e +++++++l+ +    l +++
  CCG92982.1 21 RNWRAIFFELFLGKVRLGERKKEAFLKEKEASIFERLKKASQVPLSDLY 69
                3355555555555577777777777777777788888877776666666 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.3e-05
         HAD  85 lldp...galellaahraaGdrvvvvSgglrplvepllaelg..adev.latelevdd...rltge....lglegkpvrgegkvaalrewlaaegegid 170
                 +ldp   +a ++++a +  G++v +++g ++ +++++++  g  +  v  ++e+e       +t+     +++  +p    +k++++r+   ++g +i 
  CCG92982.1 573 FLDPpkhDAEDAVRALKNYGVEVKIITGDNELVTRRICDWIGleVRGVmRGSEIENLTddeLITAAekanIFVKMSPL---QKARVIRA--LRTGGHI- 665
                 455668899999**999**********************999664444223333322233533333221133333333...44566666..4444443. PP

         HAD 171 leevvayGDspsDlpllr 188
                    v + GD+++D ++lr
  CCG92982.1 666 ---VGFLGDGINDAQALR 680
                 ...5555********997 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.8
         HAD   2 lfDfDgTLldgdsle..lllr 20 
                 ++D+  TL+++d ++  ++++
  CCG92982.1 766 IYDLSQTLIPWDRMDedFIAK 786
                 789999*****9888444333 PP

>> DUF2418  Protein of unknown function (DUF2418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   0.00019      0.43      11      56 ..     102     153 ..     100     164 .. 0.84
   2 ?   -3.1   0.1       5.1   1.2e+04      21      51 ..     328     357 ..     317     361 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
     DUF2418  11 pskfslrlftlFsPlhvlllvlll......sesvlktlllvvllslqlylli 56 
                 ps f+l l ++F+P ++ll +l+l      +++++ +++++v++s++l + +
  CCG92982.1 102 PSWFILLLQSYFNPFALLLTFLALvagsvgEKESVLIMMIMVVVSVVLRFSQ 153
                 788999****************99***9998888888888999999887654 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.1
     DUF2418  21 lFsPlhvlllvlllsesvlktlllvvllslq 51 
                 ++ P+ +l+  + ++ s++ ++l+++++ + 
  CCG92982.1 328 TLIPVIFLINGF-TKGSWMDAFLFSLAVGVG 357
                 555666666555.688999999888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (930 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 6395.12
//
Query:       CCG92983.1  [L=126]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-07   29.1   0.0      1e-06   28.3   0.0    1.4  2  Cupin_2       Cupin domain
    3.8e-05   23.6   0.0    5.1e-05   23.2   0.0    1.2  1  AraC_binding  AraC-like ligand binding domain
     0.0039   16.8   0.0     0.0056   16.3   0.0    1.3  1  Cupin_1       Cupin
  ------ inclusion threshold ------
      0.033   14.4   0.0      0.055   13.7   0.0    1.4  1  CENP-C_C      Mif2/CENP-C like
       0.17   11.1   0.0       0.27   10.5   0.0    1.3  1  GPI           Glucose-6-phosphate isomerase (GPI)


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.3   8.4e+03      20      29 ..      13      22 ..      11      23 .. 0.67
   2 !   28.3   0.0   2.9e-10     1e-06       4      71 .]      45     112 ..      42     112 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.3
                EEEEEEEESE CS
     Cupin_2 20 deffyVleGe 29
                +eff+  +G 
  CCG92983.1 13 EEFFVAQDGS 22
                4888877775 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 2.9e-10
                 EEETTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEEE CS
     Cupin_2   4 elppGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpagtpHrfrNtgdeparllvvy 71 
                 +l+p es+++h+ ++  e++  ++Geg ++  + + ++++a  +vy+p+g   +++Nt + p+ +++++
  CCG92983.1  45 KLEPRESTKPHSLSQP-EIYLFISGEGIFKtNNQRSYPVKALSLVYVPPGNMQWIENTAESPLCFFCIV 112
                 6899999999999999.*************66677*******************************995 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.4e-08   5.1e-05      12      80 ..      48     117 ..      41     125 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.4e-08
                   TT-SEEEETT-SEEEEEEEEE-EEE.EETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---G CS
  AraC_binding  12 pdhsfpphvhdeyvihyvteGtgrl.rlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegel 80 
                   p++s++ph  ++ +i ++++G+g++ + n+r y +++ +l+ +ppg +  +e  +e ++ ++++  ++ +
    CCG92983.1  48 PRESTKPHSLSQPEIYLFISGEGIFkTNNQRSYPVKALSLVYVPPGNMQWIENTAESPLCFFCIVSPPWK 117
                   77899********************5555555********************999999999998666655 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.6e-06    0.0056      12     113 ..      19     111 ..       9     119 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.6e-06
                 ETTEEEEEESTTTSTTTHSSTEEEEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEEE CS
     Cupin_1  12 seggrvteansenlpglntlgisaarvdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepavai 110
                  +g+ ++e+ + + ++ ++l  s+a   lep+    Ph   + +ei   + Geg   f ++++    ++  +++  +++vP+g ++++ n+ ++p++ +
  CCG92983.1  19 QDGSLLNELFHPD-KIGLRLPFSIAYGKLEPRESTKPHSL-SQPEIYLFISGEGI--FKTNNQ----RSYPVKALSLVYVPPGNMQWIENTAESPLCFF 109
                 5667777777777.57889999999999999999999999.99999999999999..444554....444488889***************96655555 PP

                 EEE CS
     Cupin_1 111 vvf 113
                  ++
  CCG92983.1 110 -CI 111
                 .44 PP

>> CENP-C_C  Mif2/CENP-C like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.5e-05     0.055      16      83 ..      45     109 ..      33     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
                 EEEE-T.CCCEEEEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE CS
    CENP-C_C  16 ilkLpp.gaeKkkknskkatlvFyViqGrvevtvsktsfvigkgsvFqvPagneysieNklnkeaklfF 83 
                 +  L+p + +K ++ s+ +++ F   +G  +++ ++ s+ +   s  +vP gn   ieN+  +++  fF
  CCG92983.1  45 K--LEPrESTKPHSLSQPEIYLFISGEGIFKTN-NQRSYPVKALSLVYVPPGNMQWIENTA-ESPLCFF 109
                 4..455378899999999999999999998877.7889*********************54.4444455 PP

>> GPI  Glucose-6-phosphate isomerase (GPI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.6e-05      0.27      79     144 ..      55     112 ..      22     122 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.6e-05
         GPI  79 rrstrPEvYevlkGealmlLekPeglkvddvivvevkartvvivPPnygHvsinigeedLvmanlv 144
                     +PE+Y  + Ge+++          ++ +   vka   v+vPP       n +e++L +  +v
  CCG92983.1  55 HSLSQPEIYLFISGEGIFKT--------NNQRSYPVKALSLVYVPPGNMQWIENTAESPLCFFCIV 112
                 34578***********9843........34578999**********99999999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 872.53
//
Query:       CCG92984.1  [L=45]
Description: hypothetical protein MFUM_880001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 335.60
//
Query:       CCG92985.1  [L=62]
Description: hypothetical protein MFUM_880002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 421.05
//
Query:       CCG92986.1  [L=447]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0012   18.5  28.6     0.0017   18.0  28.6    1.2  1  Gly-zipper_YMGG  YMGG-like Gly-zipper
  ------ inclusion threshold ------
       0.01   15.8   6.1       0.01   15.8   6.1    1.8  2  Stathmin         Stathmin family
       0.04   13.9   3.9       0.12   12.4   3.9    1.7  1  Spc42p           Spindle pole body component Spc42p
       0.49   10.2  29.8       0.74    9.7  29.8    1.2  1  Gly-zipper_OmpA  Glycine-zipper domain
       0.57    9.5   4.2          4    6.7   0.1    2.2  2  Aminopep         Putative aminopeptidase
       0.59   10.3   3.5        1.3    9.2   2.2    2.1  2  KapB             Kinase associated protein B
        1.3    8.1   4.5        2.4    7.2   4.5    1.3  1  Atg14            Vacuolar sorting 38 and autophagy-related su
        1.3    9.0  28.4        2.3    8.3  28.4    1.3  1  Gly-zipper_Omp   Glycine zipper
        1.4    9.1   6.8          3    8.0   6.8    1.4  1  DUF1090          Protein of unknown function (DUF1090)
        3.6    7.8  13.4        1.7    8.8   7.0    3.2  3  cwf21            cwf21 domain


Domain annotation for each model (and alignments):
>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0  28.6   9.7e-07    0.0017       3      45 ..     342     382 ..     340     383 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 9.7e-07
                      ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX- CS
  Gly-zipper_YMGG   3 avrGAaiGAaaGAvvGaliGsgggkGAaiGAaaGalaGgaiGa 45 
                      ++ GA+iG  +GA++G+l+G  gg GA+iGA+ G l+Gg+ G+
       CCG92986.1 342 TLEGAGIGLLGGALIGGLAG--GGLGAGIGAGLGLLGGGLGGY 382
                      789*****************..******************997 PP

>> Stathmin  Stathmin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.5   4.5e+03      80     110 ..     269     299 ..     264     306 .. 0.64
   2 ?   15.8   6.1   5.7e-06      0.01      55     107 ..     387     436 ..     385     445 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.5
    Stathmin  80 qKaaeennnfskaaeeklkqkmeaskenrea 110
                 qK+ e ++ +s ++   l+q m+++ +  +a
  CCG92986.1 269 QKSIEAEELYSVKSDPVLNQLMQEQDQSWQA 299
                 5666666666666666666666666665555 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 5.7e-06
    Stathmin  55 eRRksleaqklkqlaekrekeeevlqKaaeennnfskaaeeklkqkmeasken 107
                 eRRks       +lae+rek++ev++K++  +++ +k+ ee+lk+k++a + +
  CCG92986.1 387 ERRKSIYRR---KLAERREKIKEVNEKVEAYRDKLVKEYEEELKEKIQARQTQ 436
                 788887765...5799*******************************988765 PP

>> Spc42p  Spindle pole body component Spc42p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.9   6.4e-05      0.12      12      57 ..     395     442 ..     392     446 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.4e-05
      Spc42p  12 kkldekqeEierLnvlvgslRaKLiK.Yt.elnkKLedqlenlersss 57 
                  kl e++e i++ n  v+ +R KL+K Y  el  K+++++ + +  s+
  CCG92986.1 395 RKLAERREKIKEVNEKVEAYRDKLVKeYEeELKEKIQARQTQYQGISN 442
                 69***********************9764379*****99888775444 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  29.8   0.00041      0.74       4      44 .]     342     381 ..     340     381 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00041
  Gly-zipper_OmpA   4 AavGAalGAaaGAavGaitGsaGtGAaiGAasGavaGllrg 44 
                      +  GA++G ++GA++G+ +   G GA+iGA++G+++G+l g
       CCG92986.1 342 TLEGAGIGLLGGALIGGLA-GGGLGAGIGAGLGLLGGGLGG 381
                      779***************8.699***************975 PP

>> Aminopep  Putative aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0022         4     284     319 ..     281     316 ..     269     319 .. 0.81
   2 ?    3.7   0.9     0.019        34     187     237 ..     384     434 ..     377     443 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0022
    Aminopep 284 elvpafealfeeegrdlerfyaaveeLaklpkeerk 319
                 ++ p +++l++e+++++++f+a+++++ ++  + r+
  CCG92986.1 281 KSDPVLNQLMQEQDQSWQAFFARINQIRDQVIDYRN 316
                 56799*********************9998777666 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.019
    Aminopep 187 wlaaegsaaareeaaaekarreqfralvkatrerLealYasdlsaeekraa 237
                 + +++ ++  r++ a+++++ +++ + v+a+r++L + Y+++l+++ ++++
  CCG92986.1 384 YSHERRKSIYRRKLAERREKIKEVNEKVEAYRDKLVKEYEEELKEKIQARQ 434
                 4444444455899999999999*******************9887765544 PP

>> KapB  Kinase associated protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.4   2.5e+03      26      66 ..     239     279 ..     236     321 .. 0.59
   2 ?    9.2   2.2   0.00072       1.3      46      98 ..     386     439 ..     381     444 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.4
        KapB  26 lkhPtqGDLHnpkeadvvfFheRkALsykEktnvpkeavkp 66 
                 +k  +qG L +  e++ + F   + L ++ ++ ++ e +++
  CCG92986.1 239 KKAVVQGGLWRILEVEPTPFEGPESLLHSFQKSIEAEELYS 279
                 55556666666666666666655555555555555554443 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00072
        KapB  46 heRkALsykEktnvpkeavkpyegevpdYeeSlkeal.eklkekLkeeksefae 98 
                 heR+   y+ k   ++e++k+ +++v  Y++ l +   e+lkek+++++++++ 
  CCG92986.1 386 HERRKSIYRRKLAERREKIKEVNEKVEAYRDKLVKEYeEELKEKIQARQTQYQG 439
                 888888899999999999999999999998887555415678888888888865 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.5    0.0013       2.4     107     146 ..     393     433 ..     385     445 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0013
       Atg14 107 lsdklkkRrsdleslqneleerrkkqiaklqdaik.rieqk 146
                 +++kl++Rr++++ +++++e++r k+++++ +++k +i+  
  CCG92986.1 393 YRRKLAERREKIKEVNEKVEAYRDKLVKEYEEELKeKIQAR 433
                 46666777777777777777777777777777766422222 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  28.4    0.0013       2.3       2      40 ..     345     382 ..     344     386 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0013
  Gly-zipper_Omp   2 GaaiGAaaGaliGgavggrgtGaliGAavGaavGgliGa 40 
                     Ga+iG + GaliGg +gg g Ga iGA++G ++Ggl G+
      CCG92986.1 345 GAGIGLLGGALIGGLAGG-GLGAGIGAGLGLLGGGLGGY 382
                     9****************8.9**************99875 PP

>> DUF1090  Protein of unknown function (DUF1090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   6.8    0.0017         3      61     100 ..     397     436 ..     394     441 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0017
     DUF1090  61 kaerqekveekeeeVaereaeLaeakekgdkdkiakrqek 100
                 +aer+ek++e +e+V+ ++ +L ++ e++ k+ki++rq +
  CCG92986.1 397 LAERREKIKEVNEKVEAYRDKLVKEYEEELKEKIQARQTQ 436
                 5799*********************************986 PP

>> cwf21  cwf21 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.2   3.6e+02      29      43 ..     306     320 ..     271     321 .. 0.87
   2 ?    8.8   7.0   0.00096       1.7      16      44 .]     393     421 ..     385     421 .. 0.88
   3 ?   -1.5   0.2       1.6   2.9e+03      15      34 ..     421     430 ..     420     434 .. 0.56

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.2
       cwf21  29 eIeervdelRekLlk 43 
                 +I  +v  +R++L+k
  CCG92986.1 306 QIRDQVIDYRNQLIK 320
                 689999999999987 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00096
       cwf21  16 lrdeLEeeglseeeIeervdelRekLlke 44 
                 +r +L e+    +e+ e+v+++R+kL+ke
  CCG92986.1 393 YRRKLAERREKIKEVNEKVEAYRDKLVKE 421
                 999999996799***************98 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.6
       cwf21  15 elrdeLEeeglseeeIeerv 34 
                 e+++eL e          ++
  CCG92986.1 421 EYEEELKE----------KI 430
                 45555555..........44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1553  (0.0866194); expected 358.6 (0.02)
Passed bias filter:                      946  (0.0527637); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 3037.46
//
Query:       CCG92987.1  [L=819]
Description: Phosphorylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.8e-303 1008.3   0.0   2.1e-303 1008.1   0.0    1.0  1  Phosphorylase  Carbohydrate phosphorylase
  ------ inclusion threshold ------
      0.072   13.6   0.0       0.22   12.0   0.0    1.8  1  DUF4830        Domain of unknown function (DUF4830)


Domain annotation for each model (and alignments):
>> Phosphorylase  Carbohydrate phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1008.1   0.0  2.3e-307  2.1e-303       4     711 .]     107     813 ..     104     813 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1008.1 bits;  conditional E-value: 2.3e-307
                    TT--HHHHHTTS--ECESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTCCG-TT-EE-GGG-EEEEESCEEECCT CS
  Phosphorylase   4 lgldleeleeqeedagLGnGGLGRLAacfldslatlelpavGygirYeyGlFkQkiedgaqveepdeWlkkgnpweiereekavevkfggkveeee 99 
                    lgld++++ e+e++ gLGnGGLGRLAacfldsl+tl +pa+Gyg++Ye+GlF+Q+i +g+qve+pd+W+++g pwei r+  +  ++++g+++ + 
     CCG92987.1 107 LGLDIDQIFEEEPQIGLGNGGLGRLAACFLDSLSTLRYPAFGYGLHYEFGLFHQEIINGYQVERPDDWTRFGVPWEIIRPRLSQVIRLYGNIDWNG 202
                    89****************************************************************************************998755 PP

                    TE...ESEEESCEEEEEEEEEEEEE-SSSS-EEEEEEEEEE-STTTTHHCCCTTSCCHHHHCHHHHHGGGTBSS-SSSSCCHCHHHHHHHHHHHHH CS
  Phosphorylase 100 eeeklkvkwvdeeevlavpydvpvvGyktktvntLrLwsakaseefdleafnegdyikaveekneaeniskvLYPndsteegkeLrLkQqYflvsa 195
                    +    k  wv+++++l+vpyd+ ++Gy++ +vn LrLw++k++ efdleafn+g y +av+ekn +e+iskvLYPnd+te g+eLrL QqYf+vs+
     CCG92987.1 203 Q----KPVWVGGKDILGVPYDYLIPGYNSPVVNVLRLWRSKSTVEFDLEAFNRGGYFEAVAEKNFCESISKVLYPNDKTEIGRELRLIQQYFFVSC 294
                    4....689**************************************************************************************** PP

                    HHHHHHHHHHTCTTHGGGHHHHEEEEEESSTTTTHHHHHHHHHHHCC---HHHHHHHHCCCEEEEE--SSGGGS-EEEHHHHHHHSHHHHHHHHHH CS
  Phosphorylase 196 slqdilrrfkkkkkdleelpekvaiqlnDtHPalaipelmriLvdeeglewdeaweitkktfaytnhtvlpealekwpvellekllprhleiieei 291
                    sl+di+rrf k++++++++p+kv+i+lnDtHP++a++elmri++de++l+wd+aw+++++ faytnht+lpealekw+v l+e++lprhl ii+ei
     CCG92987.1 295 SLHDIVRRFLKEHSNFNDFPSKVVIHLNDTHPSIAVAELMRIFLDEHNLSWDQAWKLVSQSFAYTNHTLLPEALEKWSVPLFERVLPRHLLIIYEI 390
                    ************************************************************************************************ PP

                    HHHHHHHHHHHSTT-HHHHHHHSSEE..TSCEEEHHHHHHHCCSEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-CHHHCCCTSHHHHHH CS
  Phosphorylase 292 nerfleevekklpedeeklerlsiie..eekkvrmanlaivgshsvngvaalhsellkkevlkdfyelypekfnnktnGitprrwlllanpelael 385
                    n+++l+++   +pe+++ ++++siie    k vrmanlai+gs+s+ngv++lhsellkk++++ fy l+p+kf+n+tnGitpr wll++np+l++l
     CCG92987.1 391 NKHLLDSIPIDIPERDKIIRQISIIEetYPKLVRMANLAICGSYSINGVSSLHSELLKKSLFHPFYLLFPQKFRNVTNGITPRLWLLASNPRLSNL 486
                    **************99**********65459***************************************************************** PP

                    HHHHCSSGGCCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTS-- CS
  Phosphorylase 386 itekigeewvkdleeLkkLekladdkefleelaeikqenKerlaelikekegvevdpeslfdvqvkRlheYkRqlLnvLhiitlYneikenpekkv 481
                    it++ige+w  dle+Lk+L++++ d++f+ee++ +kq+nK +la+l+k+++++ +dpe++fdvq+kR+heYkRq+Ln+L+i++lY++i +np+ ++
     CCG92987.1 487 ITKAIGEDWPADLEKLKALKSFVLDPDFQEEYKLVKQANKIELANLLKSRYNFILDPEAIFDVQIKRIHEYKRQHLNLLQILSLYRRILDNPNLDI 582
                    ************************************************************************************************ PP

                    --EEEEEE----TT-HHHHHHHHHHHHHHHHHCC-TTTCCCEEEEEETT-SHHHHHHHGGG-SEEEE---TTTSSS-SHHHHHHHTT-EEEEESST CS
  Phosphorylase 482 vprtvifggkaapgYalAkkiiklinsvaevvnndpevkdklkvvflenynvslaekiipaadlseqistagkeASGTgnmkfmlnGaltigtlDG 577
                    +pr+++++gkaapgY lAk iik in+v+ ++nndp+ ++k++v f++ny +  a kiipaad+seqistagkeASGTgnmk++lnGalt+gtlDG
     CCG92987.1 583 HPRVFLIAGKAAPGYDLAKCIIKAINAVSYKINNDPRANKKIRVYFIPNYGIWSACKIIPAADVSEQISTAGKEASGTGNMKLALNGALTVGTLDG 678
                    ************************************************************************************************ PP

                    CHHHHHHHH-GGGSEEES-BHHHHHHHHHHT--HHHHHHH-HHHHHHHHHHHCTTTT.TTSTTTTHHHHHHHCTCC-TT-CHHHHHHHHHHHHHHH CS
  Phosphorylase 578 anvEiaeevgeenifiFGltaeeveelkkkgynpkelyekdpelkevldalesgtfs.ekekeefkelvdsllekkDeylvlaDfesYveaqekve 672
                    an+Ei+e+vgeenifiFGl+aee+++l ++gy+++++ye+dpe+k +ld l sg+f+  + ++ ++++v+sl++  D ++vlaDf+sY e+q+kv+
     CCG92987.1 679 ANIEIREAVGEENIFIFGLKAEEIAQLAAAGYSSRKIYETDPEIKYLLDWLGSGEFTpLEPPSVLHPIVHSLIDGGDPFYVLADFHSYKETQSKVD 774
                    ********************************************************93455899******************************** PP

                    HHHCSHHHHHHHHHHHHHCGGGGBHHHHHHHHHHHTTTS CS
  Phosphorylase 673 eaYkdkkewakksilniaksgkFssDrtikeYaeeiWkv 711
                    ++Ykd+++w  k+iln+a+ g+FssDr+ik+Ya++iW++
     CCG92987.1 775 QEYKDQETWVSKAILNTASLGWFSSDRSIKQYATTIWNL 813
                    *************************************85 PP

>> DUF4830  Domain of unknown function (DUF4830)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.5e-05      0.22      39      73 ..     595     629 ..     589     633 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.5e-05
     DUF4830  39 iGldLekykgkevtrytYelknypkeenevranll 73 
                  G+dL+k+  k +++++Y+++n p+ ++++r++ +
  CCG92987.1 595 PGYDLAKCIIKAINAVSYKINNDPRANKKIRVYFI 629
                 59**************************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 5211.05
//
Query:       CCG92988.1  [L=169]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-07   28.8   0.1    1.2e-05   25.2   0.1    2.0  1  DUF2017          Domain of unknown function (DUF2017)
     0.0042   16.9   1.2     0.0055   16.5   1.2    1.1  1  FAM184           Family with sequence similarity 184, A and B
     0.0068   16.2   0.6      0.024   14.4   0.6    2.0  1  SHE3             SWI5-dependent HO expression protein 3
  ------ inclusion threshold ------
      0.016   14.8   0.5       0.16   11.6   0.0    2.2  2  Nbl1_Borealin_N  Nbl1 / Borealin N terminal
       0.25   11.3   1.2         10    6.1   0.1    2.4  2  RXLR_WY          RXLR phytopathogen effector protein WY-domai


Domain annotation for each model (and alignments):
>> DUF2017  Domain of unknown function (DUF2017)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   3.5e-09   1.2e-05     110     177 .]      95     168 ..       4     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 3.5e-09
     DUF2017 110 e......veLdeeeaqawlaaLnDvRlalgtrlgieeeedaelee.lpdddpraaavavyewLtvlqesLvealm 177
                 +      +++ +++ +++l  LnD Rl+l+   gi+ee+  +++  l +++p ++a+  +++L++lqe+ ++ lm
  CCG92988.1  95 RnpskgfLRIAKKDIDQFLCLLNDRRLTLAIIHGITEEQM-DWDPfLIKSKPLQQAIWEIHFLAYLQENCISYLM 168
                 24555669***************************99998.6665488899999999999*********999887 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.2   1.5e-06    0.0055     132     194 ..      24      86 ..       3      92 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.5e-06
      FAM184 132 kaLeelrkkhreeveeLlkeqeaqsekllkeqekleekhkaeveklkeeveelekekkklvee 194
                 ++L elrk++++e+++L ++ ++  +  l+   +l+++ ++ +e+l++e  el++e+ +l ee
  CCG92988.1  24 SSLFELRKHYQQEISQLPESLRKFWQGELSRDPQLQSEFDDLIEDLSAERIELRSERLRLLEE 86 
                 4599**********************99999*****************************998 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.6   6.7e-06     0.024     120     150 ..      22      52 ..       1      86 [. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.7e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3 120 lvdsqkeYkehYqqeieeLkesleklklene 150
                 lv s  e ++hYqqei++L esl k+ + + 
  CCG92988.1  22 LVSSLFELRKHYQQEISQLPESLRKFWQGEL 52 
                 899999*****************99976544 PP

>> Nbl1_Borealin_N  Nbl1 / Borealin N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.6e-05      0.16      25      48 ..      23      46 ..      19      53 .. 0.83
   2 ?    0.9   0.2       0.1   3.6e+02       3      21 ..      63      82 ..      60      89 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
  Nbl1_Borealin_N 25 elllktlrnrfelellriPkavRk 48
                      + l +lr++++ e+ ++P+++Rk
       CCG92988.1 23 VSSLFELRKHYQQEISQLPESLRK 46
                     5667789****************8 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.1
  Nbl1_Borealin_N  3 ealLenfdlE.veeRirrlr 21
                     ++l+e++  E +e R +rlr
       CCG92988.1 63 DDLIEDLSAErIELRSERLR 82
                     57899999999777777776 PP

>> RXLR_WY  RXLR phytopathogen effector protein WY-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.018        64      19      27 ..       7      15 ..       3      19 .. 0.88
   2 ?    6.1   0.1    0.0029        10      14      31 ..      29      46 ..      26      47 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.018
                HHHHHHHHH CS
     RXLR_WY 19 eeeLkiLle 27
                +eeL+iL+e
  CCG92988.1  7 NEELVILFE 15
                8*******9 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0029
                HTTS-HHHHHHHHHHHHT CS
     RXLR_WY 14 lktnSeeeLkiLleslrk 31
                l+ + ++e+  L+eslrk
  CCG92988.1 29 LRKHYQQEISQLPESLRK 46
                678999***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1187.68
//
Query:       CCG92989.1  [L=101]
Description: ATP-dependent Clp protease adapter protein ClpS [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-21   74.2   0.1    7.3e-21   73.8   0.1    1.2  1  ClpS             ATP-dependent Clp protease adaptor protein C
     0.0048   16.9   0.0     0.0069   16.4   0.0    1.3  1  Phage_glycop_gL  Viral glycoprotein L


Domain annotation for each model (and alignments):
>> ClpS  ATP-dependent Clp protease adaptor protein ClpS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.1   8.1e-25   7.3e-21       4      79 ..      27      96 ..      24      97 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 8.1e-25
                --EEEEEES-S-S-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHSEEEEEEE-HHHHHHHHHHHHH......TT--E CS
        ClpS  4 kqYkvvLlNDdvttmefVvevLqkvfgkskeeAteimlevhreGravvgvgtreiaetkveqverlarreghpLkv 79
                + + v+++ND+++ m++Vv+v+q+v+++sk++At++mlevh++G+++v   t+e+ae  v+q++       ++L++
  CCG92989.1 27 QLWGVIVWNDPINLMSYVVYVFQRVLKMSKQDATRHMLEVHNKGKSMVAKETKEKAELLVHQLQG------FGLQA 96
                7899***********************************************************99......77766 PP

>> Phage_glycop_gL  Viral glycoprotein L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.7e-07    0.0069      34      94 ..      16      75 ..       4      83 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.7e-07
                     -EEEEE----------EEEEEHHHHHHHHHHHHHHT..GGG--HHHHHHHHHHHHHHHT-- CS
  Phage_glycop_gL 34 svAqltskktkanvsvvvCaNGfnlvSFllavlkrlplnsaeskfkdeLltlleklltkfs 94
                     sv +  ++  ++   v+v    +nl+S+++ v++r+ l++ +++ ++++l+  +k  +  +
       CCG92989.1 16 SVEEKVKEAFDQLWGVIVWNDPINLMSYVVYVFQRV-LKMSKQDATRHMLEVHNKGKSMVA 75
                     55555555555555666667779*************.999999*******99998777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1249  (0.0696637); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 763.39
//
Query:       CCG92990.1  [L=395]
Description: Bifunctional enzyme, contains ThiF/HesB family NAD/FAD binding and Rhodanese similarity domains [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-62  211.2   0.0    2.2e-62  210.6   0.0    1.2  1  ThiF       ThiF family
    5.9e-16   58.9   0.0    1.1e-15   58.0   0.0    1.5  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.6   0.0   2.5e-66   2.2e-62      10     241 ..      35     260 ..      25     266 .. 0.93

  Alignments for each domain:
  == domain 1  score: 210.6 bits;  conditional E-value: 2.5e-66
                 H.HHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCGCCS-HHHH CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  10 e.dgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritdetvleell 107
                 + +gq+kL+++kvl vG GglGs+ll +La +G+g l +vD+D+++ sNl+Rq++++++++GkpK e+a e + einp+v+v+++++ + +e++  e++
  CCG92990.1  35 TlEGQKKLKAAKVLAVGTGGLGSPLLLYLASAGIGTLGIVDFDVVDHSNLHRQVIHKTKNVGKPKIESAIETILEINPNVKVVPYEMALRSENA-LEII 132
                 449****************************************************************************************995.5*** PP

                 TT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHHHHHCTE-B-HHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 108 esvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplctsiagnipaiatttavvaglaalellk 206
                 +++D+Vvd++Dn+++r+lvn+acv  g+p + ++  +fegq +v+  +k +cy+Cl+p   e p++ +vp+c +  g   +++ +++v++ l+a e++k
  CCG92990.1 133 KEYDCVVDGTDNFPTRYLVNDACVLLGKPNVYGSIFRFEGQSTVFWAEKGPCYRCLYP---EPPEPGMVPSC-AEGG---VLGVLPGVIGVLQAIETVK 224
                 *********************************************769**********...***********.9999...******************* PP

                 HH..TTBCGGGCCEEEECCTTTTEEEEECCEEEEEE.C CS
                 xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
        ThiF 207 ll..sgkeklenslltqvdllesrfenvelerakks.k 241
                 l+   gk+ l ++ll  +d+l++rf+++ l++++++  
  CCG92990.1 225 LIlgIGKP-LIGRLL-HFDALQMRFREYVLRKDPDCpL 260
                 **865555.788888.8*************99998753 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   1.2e-19   1.1e-15       1     105 [.     295     385 ..     295     387 .. 0.89

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 1.2e-19
   Rhodanese   1 sakelkell.ekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvld 98 
                 s++elk+ l + ++ +l+DvR+++eY+   Ip+A  +             pl +l ++l el  d  ++++v+c+ ggr++ a ++l  +G+kn++++ 
  CCG92990.1 295 SVEELKRALdNGEDFILIDVREEHEYQIAKIPNAKLI-------------PLGQLHARLHEL--DSSRKIIVHCKLGGRSMKACRMLLNAGFKNIWNVH 378
                 579******4555555*********************.............***********9..***************7777666666********** PP

   Rhodanese  99 GGfkawk 105
                 GG++aw+
  CCG92990.1 379 GGIDAWS 385
                 ******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2827.42
//
Query:       CCG92991.1  [L=378]
Description: Ribonuclease D [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-28   99.5   0.0    2.3e-28   99.1   0.0    1.2  1  DNA_pol_A_exo1  3'-5' exonuclease
    1.2e-09   38.0   0.1     0.0022   18.0   0.0    2.4  2  HRDC            HRDC domain


Domain annotation for each model (and alignments):
>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.0   2.5e-32   2.3e-28       1     175 [.      19     182 ..      19     183 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 2.5e-32
                     EEEEHSHHHHHHHHHHHTTSSEEEEEEEEE-SSSTTSSEEEEEEEEECSSEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHHHHH CS
  DNA_pol_A_exo1   1 yeivtdeeeleelieelknlkvvavDtEttsldlisatlvliliqlgekeeayiidplelgddvalealkrlledenitkvghnakfDlevlard 95 
                     +++++ +  l+e+++ l+ lk++a+D E +sl+   +  +l++i+l+++   ++ +++  gd   l+ l ++l+    +++ h++++Dl++l r 
      CCG92991.1  19 VQWIEENNSLQEYLSILDPLKPIAIDIEGDSLHH--YPEKLCVISLCQEGFLAV-VDCLKGD---LSSLWKMLS--GCEWICHGMDYDLKMLRRA 105
                     589*******************************..***********9988888.8999999...9*******9..789**************** PP

                     HTS--SSEEEHHHHHHHTTHSTTSSHHHHHHHHHSB---GHCCTTSSTTTSSS-HHHHHHHHHHHHHTHHHHHHHHHHHH CS
  DNA_pol_A_exo1  96 fgielenlfdtmlaayvldyershsLdsLaekylgdleldkeeqiakwqkarplleeqllYAaeDadvllrlfkkLtkel 175
                        +++ +fdt++aa+++++++ +++++L+  +++ ++l+ke+q+a+w+ +rpl+ + + Y a+D+++l +l + L k l
      CCG92991.1 106 GCPQPQKIFDTHIAAKLCGFDS-VGYADLVSLFFQ-VKLSKEHQKADWS-RRPLPLSLVHYTAKDVLYLEKLKDILSKLL 182
                     **********************.************.*************.**************************9987 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.4e-07    0.0022       4      42 ..     230     268 ..     227     286 .. 0.83
   2 !   17.8   0.0   2.7e-07    0.0025       3      38 ..     319     354 ..     317     377 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.4e-07
                 HHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH---S CS
        HRDC   4 llkaLrewReelAreedvppyvvfpdktLleiAeklPtt 42 
                 +l +   wR+elA ++++pp+ + + + L++i+    + 
  CCG92991.1 230 ILLEIQRWRQELALSKGIPPFKIIRTEDLIQISSISSQG 268
                 5667889*************************9875554 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.7e-07
                 HHHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH CS
        HRDC   3 allkaLrewReelAreedvppyvvfpdktLleiAek 38 
                 +++++L++ R ++A+++++ p+ + +++ L e+A  
  CCG92991.1 319 KRFEELKNKRNKIASSLGLDPGLIASKALLSEMAMD 354
                 689*******************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2698.34
//
Query:       CCG92992.1  [L=248]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-85  286.9   0.0    1.2e-85  286.8   0.0    1.0  1  Transcrip_reg  Transcriptional regulator
    0.00088   19.7   0.1     0.0024   18.3   0.1    1.7  1  WSD            Williams-Beuren syndrome DDT (WSD), D-TOX E mo


Domain annotation for each model (and alignments):
>> Transcrip_reg  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.8   0.0   1.3e-89   1.2e-85       1     240 []       5     238 ..       5     238 .. 0.96

  Alignments for each domain:
  == domain 1  score: 286.8 bits;  conditional E-value: 1.3e-89
                    .XCHHCCCCCCHCCCCHHHHHHHHHHHHHHHHHTHH-S-GGG-HHHHHHHHHHHHTT--HHHHHHHHHHCCSTS.TS.--EEEEEEEEETTTEEEE CS
  Transcrip_reg   1 skWsnikhkKaandakkgklftklakeItvaakeeggpDpesNprLraaiekakkanvpkdnIeraIkkgagekseganyeevtyegygpggvavi 96 
                    s+W+++kh+K+  d +kgklf+kl++eI++aa+  gg+Dp+ N+rLr+ai+ a+ ++vp++nI raI+kg+ge  +g++yeev+yegygpgg+a++
     CCG92992.1   5 SHWAKVKHQKGLSDIRKGKLFSKLSREISIAARI-GGGDPAFNSRLRRAIATARDEGVPQENIIRAIQKGTGEI-SGSHYEEVLYEGYGPGGIAIL 98 
                    89*******************************5.999**********************************86.6778***************** PP

                    EEEEES-HHHHHHHHHHHHHHTT-EEE-TTSSGGGEEEEEEEEEECCHCT-HHHHHHHHHHHHTESEEEEETTTC.EEEEEEGGGHHHHHHHHHHT CS
  Transcrip_reg  97 vealTdnknrtaaevrsifsknggnlgesgsvsflFerkgvivveekeeevdedelleaaieaGaeDveedeeeevievitepedlaavkkaLeea 192
                    vea Tdn+nrt++e+r++fsk+ggnlg++gsvs+lF+r+g i +e++  + d+d+++e+a+ea+ae+v++  +e++ievi+ pe+l+++ k+Le+a
     CCG92992.1  99 VEAATDNRNRTTSEIRNLFSKYGGNLGAAGSVSWLFQRRGKILIEKD--KCDFDKVFEVAVEAEAEEVQQ--KEGEIEVIAFPEKLDELLKCLEKA 190
                    ********************************************554..8*******************9..5688******************** PP

                    TT---SEEEEEEEESS-EE-.-HHHHHHHHHHHHHHHTSTTEEEEEESE CS
  Transcrip_reg 193 gglevesaeleyipkeevel.deeeaekleklidaLeeldDVqnvytNi 240
                    g++ v+s++++y+pk+ + l d+e+a++l +l++ Le+ dDVqnvy+N+
     CCG92992.1 191 GIV-VKSSQIVYLPKNSILLsDKETAKSLFRLLEVLEDQDDVQNVYANF 238
                    765.****************559************************96 PP

>> WSD  Williams-Beuren syndrome DDT (WSD), D-TOX E motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   2.7e-07    0.0024      16      85 ..     132     191 ..     129     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.7e-07
         WSD  16 wlfdkgtgrlfveepsegdievllekreekesekrr.eeeeeeevleegewavysskeqleeLiesLnprg 85 
                 wlf ++ g++ +e+++ + ++v           +   e+e ee  ++ege++v++ +e+l+eL+++L++ g
  CCG92992.1 132 WLF-QRRGKILIEKDKCDFDKVF----------EVAvEAEAEEVQQKEGEIEVIAFPEKLDELLKCLEKAG 191
                 99*.*********8766222222..........223356677788899*******************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1700.49
//
Query:       CCG92993.1  [L=915]
Description: Alanyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   8.3e-177  589.0   0.0   1.8e-176  587.9   0.0    1.5  1  tRNA-synt_2c  tRNA synthetases class II (A)
      1e-16   60.7   0.7    2.1e-16   59.8   0.7    1.6  1  tRNA_SAD      Threonyl and Alanyl tRNA synthetase second addi
    4.7e-07   30.3   0.2    1.5e-06   28.7   0.2    1.9  1  DHHA1         DHHA1 domain
  ------ inclusion threshold ------
      0.084   12.4   0.9       0.18   11.3   0.9    1.5  1  Topoisom_I_N  Eukaryotic DNA topoisomerase I, DNA binding fra


Domain annotation for each model (and alignments):
>> tRNA-synt_2c  tRNA synthetases class II (A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  587.9   0.0    4e-180  1.8e-176       1     552 []       5     567 ..       5     567 .. 0.92

  Alignments for each domain:
  == domain 1  score: 587.9 bits;  conditional E-value: 4e-180
                   HHHHHHHHHHHCTT-EEE----SS-SSSTTCSS--SGGGGGHHHHTTSSCGGSS.SEEEEEEEEE-EETTEEGGGGTTTSSS--SEEEEEEEEESSS CS
  tRNA-synt_2c   1 eirekFldfFekkgHtvvksssvvpendptllfvnAgmaqfkpiflgkeakpkl.kravnsQkciRagGkhnDlenVGktarHhTfFeMlGnfsfgd 96 
                   eir++FldfF+++gHt+++s+s+vp + p+llf+nAgm++f piflgk++ p + +r++nsQkc+RagGkhnDle+VG++++HhTfFeMlGn+sf+d
    CCG92993.1   5 EIRQSFLDFFKERGHTILPSASLVP-ESPNLLFTNAGMNPFVPIFLGKQKCPYVpPRVANSQKCLRAGGKHNDLEEVGYDTYHHTFFEMLGNWSFND 100
                   8************************.99*********************54444469**************************************** PP

                   S-HHHHHHHHHHHHHTTTT--GGGEEEEEETTEH........HHHHHH....HHTTTTEGGGEEEE-HHHHEEESSSSEEEEEEEEEEEECETTSHH CS
  tRNA-synt_2c  97 Yfkeeaiefawelltkelgldkerlyvtvfeedd........eaveiw....eklvgvpeerilrfgekdnfwemgdtgpcgpcseiyydrgeeigk 181
                   Yfk+eai++awellt++ +++ker+y+tv++ +         + ++iw    +k +  p  +i+  ++kdnfw mg+tgpcgpcsei++d  +e   
    CCG92993.1 101 YFKNEAIHWAWELLTEVWKIPKERIYATVYKPAPedpaefdeDSFRIWfglfQKSGLNPLVHIQFGSKKDNFWMMGETGPCGPCSEIHIDLTPEGN- 196
                   ******************************987667899998666666333377777789999999*************************66654. PP

                   CHCCCCTTCTCCHEEEEEEEEEEEEEESTTSHEEEEEEEEEEEEEEHHHHHHHHTTHS.........SGGGSCCTHHHHHHHHHHHT--T....... CS
  tRNA-synt_2c 182 rkaaseveadddrvleiwnlvfmqfnreedgtlkpLpkksidtGmglerlvavLqevr.........snydtdlfvpvieaieeisgaty....... 262
                    ++++  + + + ++eiwnlvf+q + +edg+ + Lp +++dtGmgler+ a+ + +          sny+tdlf+p+i + e is+ +y       
    CCG92993.1 197 -SEGTLINKNSPYCIEIWNLVFIQLDAKEDGSFSLLPSRHVDTGMGLERICAIFKGTSyfqkfdapiSNYNTDLFIPLIRKLEDISKISYkgtipte 292
                   .488899999****************************************999876543333334448***************************99 PP

                   ....CSTCCHHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHTTTGCCHHCCHHHHHHHHHHHH CS
  tRNA-synt_2c 263 ....edkdetdealrviaDHvralafaladGvvpsnegrgYvlRrllRravrhakkLglkekflaklvavvvevlgdvypelkekeekveeiieeEe 355
                       + + ++d a+rvi DH+ra+afa+adG++psn grg vlRrllRra r++  Lglk +fl +lv+ +v+ +g +y el +k++++ee+++ Ee
    CCG92993.1 293 ntvqDLTIRQDIAFRVIVDHLRAIAFAIADGILPSNLGRGHVLRRLLRRATRFGLVLGLKPPFLFELVDPLVQTMGHYYIELIDKQRRIEEVVSSEE 389
                   887555667899************************************************************************************* PP

                   HHHHCCHHHHHHHHHHHHHHCCC..CSEEXHHHHHHHHHCHXXXHHHHHHHHHCTTXEEXHHHHHHHHHHHHHHHCCHHSXSSXXXXXXXXTTSHCH CS
  tRNA-synt_2c 356 erFakTlerGlklleelikklkk..kkelsgedafkLydtyGfPvdltkeiaeekglkvdiegfekameeqrerskkekkekklikkdvealkelkk 450
                   e FakTl++G++++ee  +k+ +  +ke+ g++af LydtyGfP+dlt+++a+e+g++vd++gfe+ meeqr+rs  +         + e++ +l+k
    CCG92993.1 390 ELFAKTLSHGMAVFEEIKQKMLSenRKEILGKEAFILYDTYGFPLDLTQLLAKEHGFSVDTKGFEQYMEEQRQRSIVA---------HEEDIVSLTK 477
                   ****************9999766679*************************************************333.........3457899*** PP

                   HCCTSTTTXXXXXXTSXXXXXXSEEEEEEEEEETTEEEESEEXXXXSSSSCSXXXEEEEESSEEEEESEEEEET.TEEEEEXSS.XSXXXTTSEEEE CS
  tRNA-synt_2c 451 teeflgyeeleaeakvlallkdkefveeveegeevgvvLdrTpfYaesGGqigDeGliekegaefrvkdvqkak.gvvlhkgkleegklkvgdkvka 546
                   t+ef+gyeeleaea+v+all+ +              ++drTpfYae GGq gD+G+i  ++++++v d+ k + g +lh+  ++ ++lk g +v +
    CCG92993.1 478 TSEFVGYEELEAEAEVVALLSAN------------RAIFDRTPFYAEMGGQVGDKGFILVDQKRIEVLDTIKSAsGAHLHRLAFT-DDLKPGSRVFL 561
                   ****************9877654............459*********************************9999*********6.*********** PP

                   EEXHHH CS
  tRNA-synt_2c 547 evdeer 552
                   +vd+er
    CCG92993.1 562 QVDKER 567
                   ***986 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.7   4.6e-20   2.1e-16       1      44 []     665     708 ..     665     708 .. 0.99

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 4.6e-20
                 EEEEEETT.EEEEESS---SBGGGC-SEEEECCECCCTCEEEEE CS
    tRNA_SAD   1 vrvvsiGdisvelCgGtHvpnTgeIgafkilseesiakglrRIy 44 
                 vr+vsiG++s+elCgGtH ++Tge+g fkil e ++++g+rRI+
  CCG92993.1 665 VRIVSIGNYSKELCGGTHAKSTGELGYFKILGECGVSAGIRRIE 708
                 9******************************************7 PP

>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.2   3.4e-10   1.5e-06       5     134 ..     774     906 ..     760     914 .. 0.66

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 3.4e-10
                 CHHHHHHHHHHHCHHHHHHHHHHHHHHHTCEEECTCEEEEEECHCCHHH.HHHHHHHHHHHTHGBT.TCEEEEEEEECTEEEEEEEESSH...SS-HHH CS
       DHHA1   5 neerkelekeleelkealaklkaeellekaeevkgvkvlvaevgeewda.galgiaadklksklkk.pvivfvakeegdkvkvsarskkd...gvdage 98 
                 +e+ k+  k+ ee  + +ak +  el+++ae++  v+v++     ++++   l i+ ++l++      ++v+ +  e+ k+++ ++ +++   ++ a +
  CCG92993.1 774 REKEKQKAKKQEESFRLEAKSQVMELQARAEKFGSVPVIFYDC--GIKPsSYLPILWNELNK--RVeGIAVLSSRWEE-KINFFVGISPSltqKIQAKA 867
                 2233333333333333444444445555555553555555555..777769***********..66466666666666.*********99********* PP

                 HHHHHHHHTTCCEEEE.TCEEEEEEE..HCHHHHHHHHH CS
       DHHA1  99 lakeaaaklgggGGGH.dlAaGagip..aekleealeal 134
                 +++++   l g+GGG    A+G+ ++    +l+ + e++
  CCG92993.1 868 VLSKILLPLEGKGGGSaTIAQGGCKDkkDLNLNLIFEKA 906
                 **********************99973422244444444 PP

>> Topoisom_I_N  Eukaryotic DNA topoisomerase I, DNA binding fragment
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.9     4e-05      0.18      79     124 ..     745     790 ..     719     822 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4e-05
                   --GGGEE-HHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHE CS
  Topoisom_I_N  79 kelekcdFskikeylekekekkkaltkeekkklkeekekleekygy 124
                   k  e++dF+++ e +++++e+  +l+k+ ++k+k++ +k+ee++ +
    CCG92993.1 745 KFTESLDFQSLIELFQRRSEEIAELEKDIREKEKQKAKKQEESFRL 790
                   445789*************998888887777777777777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (915 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1065  (0.059401); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.49
# Mc/sec: 5616.33
//
Query:       CCG92994.1  [L=70]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-24   84.6  11.7    4.4e-24   84.4  11.7    1.0  1  DUF2905   Protein of unknown function (DUF2905)
  ------ inclusion threshold ------
       0.54   10.7   4.9       0.84   10.1   4.8    1.4  1  DUF4212   Domain of unknown function (DUF4212)
       0.68    8.6   5.7       0.76    8.5   5.7    1.0  1  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> DUF2905  Protein of unknown function (DUF2905)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4  11.7   7.3e-28   4.4e-24       1      63 []       5      68 ..       5      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 7.3e-28
     DUF2905  1 gklLivlglvlvvlgllllllaklg.lGrLPGDirierenftfyfPlttsillSlllslllnll 63
                gk+L++lg++l+v+gl++ l    g +GrLPGDi+ie++nftfyfPlttsil+S++ls++++l+
  CCG92994.1  5 GKILVFLGIFLIVIGLIIGLGFGKGwIGRLPGDIKIEKGNFTFYFPLTTSILISIILSFIFWLI 68
                79****************99833326************************************97 PP

>> DUF4212  Domain of unknown function (DUF4212)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   4.8   0.00014      0.84      14      67 ..      14      67 ..       6      70 .] 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00014
     DUF4212 14 ilLviWfvvsfglgillaeelntirtflgfplgFwfaaqgsilvfvvlifvYal 67
                 l+vi +++  g+g  ++ +l    ++    + F+f    sil+ ++l f++ l
  CCG92994.1 14 FLIVIGLIIGLGFGKGWIGRLPGDIKIEKGNFTFYFPLTTSILISIILSFIFWL 67
                566666777777776677777666569999*********************976 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.7   0.00013      0.76     382     430 ..       7      68 ..       2      70 .] 0.59

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00013
     DUF2207 382 klsalglgliilglilillallllvll................lvfllilllillliaiivlllf 430
                 +l +lg++li++gli++l++     ++                ++f l +++++ +i++++++l+
  CCG92994.1   7 ILVFLGIFLIVIGLIIGLGF---GKGWigrlpgdikiekgnftFYFPLTTSILISIILSFIFWLI 68 
                 44555555555555555444...2333789*********96665555555666666655555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 523.83
//
Query:       CCG92995.1  [L=58]
Description: hypothetical protein MFUM_880012 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.46
# Mc/sec: 382.73
//
Query:       CCG92996.1  [L=461]
Description: DNA-directed RNA polymerase specialized sigma subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-59  198.0   0.3      2e-58  196.6   0.2    1.8  2  Sigma54_DBD      Sigma-54, DNA binding domain
    2.3e-52  177.5   0.8    7.1e-52  175.8   0.3    2.0  2  Sigma54_CBD      Sigma-54 factor, core binding domain
    3.5e-14   52.4   6.7    1.3e-13   50.6   6.7    2.1  1  Sigma54_AID      Sigma-54 factor, Activator interacting domai
    2.3e-05   24.1   0.4       0.36   10.7   0.0    3.9  4  HTH_23           Homeodomain-like domain
     0.0002   21.1   0.4     0.0026   17.5   0.3    2.6  2  LacI             Bacterial regulatory proteins, lacI family
    0.00062   19.6   0.3        3.8    7.5   0.0    3.8  3  TrmB             Sugar-specific transcriptional regulator Trm
     0.0012   19.3   0.2        2.8    8.5   0.0    3.3  3  HTH_40           Helix-turn-helix domain
     0.0013   19.0   0.3      0.067   13.5   0.0    3.3  4  HTH_18           Helix-turn-helix domain
     0.0015   18.2   0.7        4.1    7.2   0.0    3.8  3  Sigma70_r4_2     Sigma-70, region 4
     0.0016   18.3   0.0        1.2    9.1   0.0    3.5  3  HTH_36           Helix-turn-helix domain
     0.0021   18.0   0.0        1.9    8.5   0.0    2.9  2  HTH_11           HTH domain
     0.0023   17.7   0.2        1.2    9.0   0.0    3.5  4  HTH_AsnC-type    AsnC-type helix-turn-helix domain
     0.0031   17.6   0.8        5.4    7.2   0.0    3.2  3  Sigma70_r3       Sigma-70 region 3
     0.0041   16.5   0.2      0.036   13.5   0.0    2.6  3  HTH_Tnp_ISL3     Helix-turn-helix domain of transposase famil
     0.0063   16.0   0.0        1.9    8.0   0.0    3.4  3  Sigma70_r4       Sigma-70, region 4
     0.0081   15.9   0.0       0.17   11.7   0.0    2.9  2  HTH_IclR         IclR helix-turn-helix domain
  ------ inclusion threshold ------
       0.01   15.4   0.6        2.5    7.7   0.0    4.0  4  HTH_24           Winged helix-turn-helix DNA-binding
      0.011   15.5   0.0       0.35   10.7   0.0    2.9  3  HTH_38           Helix-turn-helix domain
      0.011   15.5   0.0        7.1    6.5   0.0    3.1  3  TetR_N           Bacterial regulatory proteins, tetR family
      0.012   15.7   0.0       0.74   10.0   0.0    3.0  2  HTH_17           Helix-turn-helix domain
      0.015   15.4   1.7      0.096   12.8   0.0    3.1  4  HTH_3            Helix-turn-helix
       0.02   14.7   0.6         31    4.5   0.0    3.8  3  HTH_10           HTH DNA binding domain
      0.048   13.6   0.0       0.24   11.4   0.0    2.2  1  HTH_Crp_2        Crp-like helix-turn-helix domain
      0.075   13.1   0.0        3.8    7.6   0.0    2.7  2  HTH_29           Winged helix-turn helix
      0.088   13.0   0.1         22    5.3   0.0    2.8  2  HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
      0.096   12.4   1.6         19    5.0   0.0    3.6  4  GntR             Bacterial regulatory proteins, gntR family
        0.1   12.5   0.0       0.97    9.4   0.0    2.5  2  MarR_2           MarR family


Domain annotation for each model (and alignments):
>> Sigma54_DBD  Sigma-54, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.5   3.6e+03      22      35 ..     123     136 ..      99     164 .. 0.60
   2 !  196.6   0.2     3e-61     2e-58       2     160 .]     302     460 ..     301     460 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.5
                  HHHHHHHHHHHHHH CS
  Sigma54_DBD  22 ketllkvaeeiver 35 
                  ++tllk a++i+ +
   CCG92996.1 123 DKTLLKAANHIIGN 136
                  56666666666644 PP

  == domain 2  score: 196.6 bits;  conditional E-value: 3e-61
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXSSXXXXXXXHHHHHTTSSSXHHHHHHHHHHXEEEXSSXEEECSCCXXXCSSTSSBHH CS
  Sigma54_DBD   2 eylkeklqeakwliksleqRketllkvaeeiverQkdflekgeealrpltlrevaealelhesTvSRvvsnkyiktprGvfelkafFsssvsseegge 99 
                  +ylkek+++   lik l+ R++tll+vae+ive Q++f+++g+  l+plt++eva++ ++he+TvSR+++nky++tp+G+felk+fF+s  ++++g+ 
   CCG92996.1 302 NYLKEKMRSGLFLIKCLRMRENTLLRVAEAIVESQQEFFQHGPGFLKPLTMSEVAKKTGVHETTVSRAIANKYVQTPYGIFELKYFFNSGFQKTTGEF 399
                  799********************************************************************************************999 PP

                  THHHHCCTHHHHHHCTS-TTSS--CCHHHHHHHCTTS--HHHHHHHHHHHCT-STTCCCHS CS
  Sigma54_DBD 100 asaeaikalikklieaEdkkkplSDdkivellkekgieiaRRtvaKYRealnipssserrr 160
                  +++++ik+ i++li +Ed+++plSD++ive+l++ gi++aRRt+aKYR +l+i +s+ rr+
   CCG92996.1 400 VANQTIKESIERLIRNEDPQAPLSDQQIVEALAKMGIKMARRTIAKYRTHLKILPSHLRRK 460
                  *********************************************************9985 PP

>> Sigma54_CBD  Sigma-54 factor, core binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.8   0.3   1.1e-54   7.1e-52       5     179 .]     102     287 ..      99     287 .. 0.95
   2 ?   -2.0   0.0       4.1   2.7e+03      93     127 ..     330     371 ..     314     372 .. 0.59

  Alignments for each domain:
  == domain 1  score: 175.8 bits;  conditional E-value: 1.1e-54
  Sigma54_CBD   5 laaaeeslqehLleQlallelseeereiaeylienLdedGYleesleeiaeel..eeeeveavlkliqsldPaGvgArdlqEcLllQlk........a 92 
                   ++a+es++ +L +Qlal   +++  ++a+++i+nLde+GYl+++leeia++l    + +e++l+l+qsldP+G++Ar+l+EcLllQlk         
   CCG92996.1 102 SQTASESMTTELSKQLALVCNDKTLLKAANHIIGNLDEKGYLRAELEEIATDLgmPYSLIEEALSLVQSLDPPGIAARNLSECLLLQLKaqgkenslE 199
                  467889************9999********************************9999******************************6667788997 PP

  Sigma54_CBD  93 ealieehlellakkdlkklakklglseeelqealelIkkLnPkPgrefsseea.eyivPDvivekeegelevelndealpkLrineeY 179
                   ++++e+l ll++k+++++ak+l++s +++qea++ I++L+P Pg++f ++e+ ++i  D+i+ +e+++++v  n+e +p+Lr+n++Y
   CCG92996.1 200 FRIVKECLPLLERKKFNEIAKQLKVSLKQVQEAVATIRSLEPFPGSKFGNDEKeKIILVDLIIVREGESWKVYFNEELMPRLRLNHYY 287
                  77***********************************************77776*******************************998 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.1
  Sigma54_CBD  93 ealieehlellakkd.......lkklakklglseeelqeale 127
                  ea++e++ e +++         ++++akk+g+ e+++++a++
   CCG92996.1 330 EAIVESQQEFFQHGPgflkpltMSEVAKKTGVHETTVSRAIA 371
                  455554444444322333333378889999999998888875 PP

>> Sigma54_AID  Sigma-54 factor, Activator interacting domain (AID)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   6.7   1.9e-16   1.3e-13       2      46 .]       7      51 ..       6      51 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 1.9e-16
  Sigma54_AID  2 lqlkqtQklkLtpqLqQaiklLqlstlELeeeieeeleeNPlLEi 46
                 l ++++++++L+pq+q+++++Lq+++ EL+++i++el+ NP+LEi
   CCG92996.1  7 LYQSVKLHQTLSPQMQHSLNILQAPAVELSTLIQQELLANPMLEI 51
                 6799****************************************7 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0       0.3     2e+02      11      32 ..     134     159 ..     125     167 .. 0.79
   2 ?    6.3   0.0     0.013       8.6      14      37 ..     209     232 ..     199     240 .. 0.78
   3 !   10.7   0.0   0.00054      0.36      19      39 ..     351     371 ..     350     376 .. 0.89
   4 ?   -2.1   0.0       5.5   3.7e+03      10      25 ..     427     445 ..     423     448 .. 0.50

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.3
      HTH_23  11 llllae....GlsvreIAreLgvsrr 32 
                 +  l+e    ++  +eIA+ Lg++++
  CCG92996.1 134 IGNLDEkgylRAELEEIATDLGMPYS 159
                 555666666688899********988 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
      HTH_23  14 laeGlsvreIAreLgvsrrTvyrw 37 
                 l+e++   eIA++L vs  +v+  
  CCG92996.1 209 LLERKKFNEIAKQLKVSLKQVQEA 232
                 34788889************9865 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00054
      HTH_23  19 svreIAreLgvsrrTvyrwlk 39 
                 + +e+A++ gv++ Tv+r + 
  CCG92996.1 351 TMSEVAKKTGVHETTVSRAIA 371
                 789**************9864 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 5.5
      HTH_23  10 illllae...GlsvreIAr 25 
                 i+ +la+   ++ +r+IA+
  CCG92996.1 427 IVEALAKmgiKMARRTIAK 445
                 5555554444444444443 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0         1   6.7e+02      24      40 ..     318     334 ..     312     336 .. 0.83
   2 !   17.5   0.3     4e-06    0.0026       1      23 [.     351     373 ..     351     377 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1
                 SSSTHHHHHHHHHHHHH CS
        LacI  24 erVseetrerVeaamee 40 
                  r++e+t  rV++a+ e
  CCG92996.1 318 LRMRENTLLRVAEAIVE 334
                 68999*******99977 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 4e-06
                 -HHHHHHHCTS-HHHHHHHCTTS CS
        LacI   1 tikDVArlAGVSkaTVSrvLnnk 23 
                 t+ +VA++ GV  +TVSr + nk
  CCG92996.1 351 TMSEVAKKTGVHETTVSRAIANK 373
                 89******************997 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.096        64      23      44 ..     145     166 ..     136     176 .. 0.90
   2 ?    4.0   0.0      0.07        46      21      44 ..     211     234 ..     201     240 .. 0.86
   3 !    7.5   0.0    0.0057       3.8      21      43 ..     348     370 ..     347     372 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.096
                 CHHCHHCCCTTSSCHCHHHHHH CS
        TrmB  23 atadeiaeelgvprskvYevLr 44 
                 a+ +eia +lg p+s + e+L+
  CCG92996.1 145 AELEEIATDLGMPYSLIEEALS 166
                 6679*************99985 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.07
                 CCCHHCHHCCCTTSSCHCHHHHHH CS
        TrmB  21 gpatadeiaeelgvprskvYevLr 44 
                 ++++ +eia++l+v+  +v+e++ 
  CCG92996.1 211 ERKKFNEIAKQLKVSLKQVQEAVA 234
                 677889**************9985 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0057
                 CCCHHCHHCCCTTSSCHCHHHHH CS
        TrmB  21 gpatadeiaeelgvprskvYevL 43 
                 +p+t++e+a+++gv +++v +++
  CCG92996.1 348 KPLTMSEVAKKTGVHETTVSRAI 370
                 699****************9987 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       7.9   5.3e+03      14      33 ..     146     165 ..     144     174 .. 0.80
   2 !    8.5   0.0    0.0042       2.8      10      58 ..     210     257 ..     205     279 .. 0.88
   3 ?    6.8   0.1     0.014       9.4      11      35 ..     348     372 ..     345     445 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 7.9
      HTH_40  14 sieeIAkerglkesTIegHL 33 
                 ++eeIA+  g+  s Ie+ L
  CCG92996.1 146 ELEEIATDLGMPYSLIEEAL 165
                 58999999999888887766 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0042
      HTH_40  10 eeglsieeIAkerglkesTIegHLaelieegeeidlerlvseeeekeIe 58 
                  e +++ eIAk+ +++ + +++ +a +    e+++ +++ ++e+ek I 
  CCG92996.1 210 LERKKFNEIAKQLKVSLKQVQEAVATIRSL-EPFPGSKFGNDEKEKIIL 257
                 577899*******************96666.67*********9999986 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.014
      HTH_40  11 eglsieeIAkerglkesTIegHLae 35 
                 + l++ e+Ak+ g+ e+T+ + +a+
  CCG92996.1 348 KPLTMSEVAKKTGVHETTVSRAIAN 372
                 6689***************999885 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         9     6e+03       1      18 [.     218     235 ..     218     241 .. 0.80
   2 ?   -2.1   0.0       7.3   4.8e+03      30      45 ..     280     295 ..     276     300 .. 0.77
   3 ?    1.3   0.0      0.64   4.3e+02       1      25 [.     355     379 ..     355     383 .. 0.88
   4 !   13.5   0.0    0.0001     0.067      12      80 ..     384     459 ..     379     460 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 9
                 HHHHHT--HHHHHHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkr 18 
                 +a++l vs +++q+++ +
  CCG92996.1 218 IAKQLKVSLKQVQEAVAT 235
                 689999999999988765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 7.3
                 HHHHHHHHHHHHSSS- CS
      HTH_18  30 rlRlerArrlLlentg 45 
                 rlRl++  + Ll++++
  CCG92996.1 280 RLRLNHYYKNLLSDKD 295
                 8999999999997655 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.64
                 HHHHHT--HHHHHHHHHHHTSS-HH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpk 25 
                 +a+++gv++ t++r++ + + +tp+
  CCG92996.1 355 VAKKTGVHETTVSRAIANKYVQTPY 379
                 5999************999988886 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 0.0001
                 HHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSS.......S---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18  12 LqrlfkrvlgltpkeylrrlRlerArrlLlen.......tglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 L++ f++ +++t  e++ +  +++  ++L++n       +++ + e+ ++ G + ++r ++ +r ++ ++Ps+ rr
  CCG92996.1 384 LKYFFNSGFQKTTGEFVANQTIKESIERLIRNedpqaplSDQQIVEALAKMGIKMARRTIAKYRTHLKILPSHLRR 459
                 78899999**********************965555666689********************************98 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.25   1.7e+02      30      44 ..     148     162 ..     146     167 .. 0.81
   2 ?    4.7   0.0     0.037        24      27      44 ..     213     230 ..     209     237 .. 0.83
   3 !    7.2   0.0    0.0061       4.1      27      47 ..     350     370 ..     346     372 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.25
                   HHHHHHHT--HHHHH CS
  Sigma70_r4_2  30 kEIAellgisegtVk 44 
                   +EIA  lg++ + ++
    CCG92996.1 148 EEIATDLGMPYSLIE 162
                   8********988766 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.037
                   --HHHHHHHHT--HHHHH CS
  Sigma70_r4_2  27 lsykEIAellgisegtVk 44 
                   ++  EIA++l++s + V+
    CCG92996.1 213 KKFNEIAKQLKVSLKQVQ 230
                   5667**********9997 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0061
                   --HHHHHHHHT--HHHHHHHH CS
  Sigma70_r4_2  27 lsykEIAellgisegtVksrl 47 
                   l+  E+A+++g++e+tV +++
    CCG92996.1 350 LTMSEVAKKTGVHETTVSRAI 370
                   6788*************9887 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.05        33      28      47 ..     215     234 ..     203     239 .. 0.83
   2 !    9.1   0.0    0.0018       1.2      27      47 ..     351     371 ..     338     372 .. 0.89
   3 ?   -0.7   0.0       2.2   1.5e+03      46      46 ..     431     431 ..     392     451 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.05
      HTH_36  28 qetlakrlglsknTvsraik 47 
                 +  +ak+l++s ++v+ a++
  CCG92996.1 215 FNEIAKQLKVSLKQVQEAVA 234
                 678*************9976 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0018
      HTH_36  27 sqetlakrlglsknTvsraik 47 
                 +++  ak++g+++ Tvsrai+
  CCG92996.1 351 TMSEVAKKTGVHETTVSRAIA 371
                 57788**************97 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.2
      HTH_36  46 i 46 
                 +
  CCG92996.1 431 L 431
                 2 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.014         9      19      42 ..     216     239 ..     203     243 .. 0.90
   2 !    8.5   0.0    0.0028       1.9      15      37 ..     349     371 ..     347     372 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.014
      HTH_11  19 eeLAeeLnvSrrtvrrdIkaLeel 42 
                 +e+A++L+vS + v+  ++++++l
  CCG92996.1 216 NEIAKQLKVSLKQVQEAVATIRSL 239
                 79*****************99986 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0028
      HTH_11  15 pisgeeLAeeLnvSrrtvrrdIk 37 
                 p++ +e A++++v ++tv r I+
  CCG92996.1 349 PLTMSEVAKKTGVHETTVSRAIA 371
                 7999*****************97 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       9.9   6.6e+03      17      29 ..     144     156 ..     144     158 .. 0.83
   2 ?    4.0   0.0     0.066        44      17      37 ..     212     232 ..     211     235 .. 0.86
   3 !    9.0   0.0    0.0018       1.2      18      38 ..     350     370 ..     349     372 .. 0.89
   4 ?   -0.9   0.0       2.3   1.6e+03       5      15 ..     424     434 ..     423     445 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 9.9
  HTH_AsnC-type  17 RisyaeLAervGl 29 
                    R+  +e+A  +G+
     CCG92996.1 144 RAELEEIATDLGM 156
                    677899**99997 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.066
  HTH_AsnC-type  17 RisyaeLAervGlSestvlrR 37 
                    R  + e+A+++ +S  +v++ 
     CCG92996.1 212 RKKFNEIAKQLKVSLKQVQEA 232
                    77899*********9999875 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0018
  HTH_AsnC-type  18 isyaeLAervGlSestvlrRv 38 
                    ++++e+A+++G+ e+tv r +
     CCG92996.1 350 LTMSEVAKKTGVHETTVSRAI 370
                    589**************9976 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 2.3
  HTH_AsnC-type   5 DrkILeaLqed 15 
                    D++I+eaL + 
     CCG92996.1 424 DQQIVEALAKM 434
                    99*****9875 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0089       5.9      20      45 ..     144     169 ..     127     171 .. 0.85
   2 !    7.2   0.0    0.0081       5.4      24      41 ..     216     233 ..     214     239 .. 0.88
   3 ?   -1.5   0.0       4.1   2.7e+03      23      41 ..     352     370 ..     351     373 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0089
                 XXXHHHHHHHHTXXHHHHHHHHHHHX CS
  Sigma70_r3  20 ePtpeEiAeeLglseekVrevleaar 45 
                  +  eEiA  Lg++ + ++e+l +++
  CCG92996.1 144 RAELEEIATDLGMPYSLIEEALSLVQ 169
                 5778****************999876 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0081
                 HHHHHHHTXXHHHHHHHH CS
  Sigma70_r3  24 eEiAeeLglseekVrevl 41 
                  EiA++L++s+++V+e++
  CCG92996.1 216 NEIAKQLKVSLKQVQEAV 233
                 6**************987 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 4.1
                 HHHHHHHHTXXHHHHHHHH CS
  Sigma70_r3  23 peEiAeeLglseekVrevl 41 
                   E+A+++g+ e  V +++
  CCG92996.1 352 MSEVAKKTGVHETTVSRAI 370
                 57*******9999998775 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.7   1.8e+03      30      44 ..     215     229 ..     215     233 .. 0.78
   2 !   13.5   0.0   5.4e-05     0.036      29      48 ..     351     370 ..     347     372 .. 0.91
   3 ?   -2.4   0.1       4.9   3.3e+03      17      27 ..     424     434 ..     423     445 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.7
  HTH_Tnp_ISL3  30 vkavArqlgvSwtTV 44 
                   + ++A+ql vS + V
    CCG92996.1 215 FNEIAKQLKVSLKQV 229
                   5689*****996555 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.4e-05
  HTH_Tnp_ISL3  29 svkavArqlgvSwtTVwril 48 
                   ++++vA+ +gv++tTV r++
    CCG92996.1 351 TMSEVAKKTGVHETTVSRAI 370
                   9*****************87 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.9
  HTH_Tnp_ISL3  17 eayilellles 27 
                   +++i+e+l ++
    CCG92996.1 424 DQQIVEALAKM 434
                   58899999988 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.75     5e+02      22      33 ..     146     157 ..     142     161 .. 0.87
   2 ?    2.7   0.0      0.13        88      21      37 ..     213     229 ..     199     234 .. 0.81
   3 !    8.0   0.0    0.0029       1.9      17      40 ..     346     369 ..     339     372 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.75
                 -HHHHHHHHTS- CS
  Sigma70_r4  22 TleEIgerlgiS 33 
                  leEI+  lg++
  CCG92996.1 146 ELEEIATDLGMP 157
                 59********97 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.13
                 --HHHHHHHHTS-HHHH CS
  Sigma70_r4  21 lTleEIgerlgiSrerV 37 
                   + EI+++l +S+  V
  CCG92996.1 213 KKFNEIAKQLKVSLKQV 229
                 5578*********9877 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0029
                 HTTT--HHHHHHHHTS-HHHHHHH CS
  Sigma70_r4  17 fgeglTleEIgerlgiSrerVrqi 40 
                 f+++lT++E++++ g+ + +V++ 
  CCG92996.1 346 FLKPLTMSEVAKKTGVHETTVSRA 369
                 6799*****************986 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.9     6e+02      21      33 ..     147     159 ..     136     161 .. 0.86
   2 !   11.7   0.0   0.00026      0.17      18      38 ..     349     369 ..     330     372 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.9
                 HHHHHHHHTS-HH CS
    HTH_IclR  21 lselArrtglpkS 33 
                 l e+A  +g+p S
  CCG92996.1 147 LEEIATDLGMPYS 159
                 89********965 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00026
                 S-BHHHHHHHHTS-HHHHHHH CS
    HTH_IclR  18 eltlselArrtglpkStvhRl 38 
                 +lt se+A++tg++ +tv+R 
  CCG92996.1 349 PLTMSEVAKKTGVHETTVSRA 369
                 59*****************96 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.8   1.2e+03      33      48 .]     129     144 ..     127     144 .. 0.86
   2 ?    2.6   0.0      0.15     1e+02      20      38 ..     215     233 ..     211     235 .. 0.84
   3 ?    7.7   0.0    0.0038       2.5      18      39 ..     350     371 ..     349     372 .. 0.93
   4 ?   -2.2   0.0       4.8   3.2e+03      31      44 ..     402     415 ..     400     416 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.8
      HTH_24  33 tvnrrlkrLeeeGlIk 48 
                 + n  + +L e+G+++
  CCG92996.1 129 AANHIIGNLDEKGYLR 144
                 67999*********85 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.15
      HTH_24  20 qreLAerlglSpstvnrrl 38 
                  +e+A++l +S+  v + +
  CCG92996.1 215 FNEIAKQLKVSLKQVQEAV 233
                 68*********99887765 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0038
      HTH_24  18 isqreLAerlglSpstvnrrlk 39 
                 ++++e+A+++g+  +tv+r + 
  CCG92996.1 350 LTMSEVAKKTGVHETTVSRAIA 371
                 79*****************985 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 4.8
      HTH_24  31 pstvnrrlkrLeee 44 
                  +t+++ ++rL+++
  CCG92996.1 402 NQTIKESIERLIRN 415
                 5899999****986 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       7.8   5.2e+03      24      37 ..     148     161 ..     134     162 .. 0.74
   2 ?    0.8   0.0      0.65   4.3e+02      19      33 ..     212     225 ..     204     225 .. 0.75
   3 ?   10.7   0.0   0.00052      0.35      21      41 ..     350     370 ..     347     372 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7.8
      HTH_38  24 reIArrLgrspsTI 37 
                  eIA  Lg   s I
  CCG92996.1 148 EEIATDLGMPYSLI 161
                 48999999877776 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.65
      HTH_38  19 eGlslreIArrLgrs 33 
                 +++ + eIA++L++s
  CCG92996.1 212 RKK-FNEIAKQLKVS 225
                 444.89******986 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00052
      HTH_38  21 lslreIArrLgrspsTIsREl 41 
                 l+++e+A++ g++ +T+sR +
  CCG92996.1 350 LTMSEVAKKTGVHETTVSRAI 370
                 699****************88 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.031        21      10      30 ..     138     158 ..     126     161 .. 0.86
   2 ?   -0.9   0.0       2.3   1.5e+03      19      29 ..     215     225 ..     211     226 .. 0.88
   3 ?    6.5   0.0     0.011       7.1      16      35 ..     349     368 ..     337     374 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.031
                 HHHHTTT--HHHHHHHHTSSH CS
      TetR_N  10 aerGydattvreIAkrAGvsk 30 
                  e+Gy ++ ++eIA  +G+  
  CCG92996.1 138 DEKGYLRAELEEIATDLGMPY 158
                 69************9999865 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.3
                 HHHHHHHHTSS CS
      TetR_N  19 vreIAkrAGvs 29 
                 ++eIAk+++vs
  CCG92996.1 215 FNEIAKQLKVS 225
                 689*****998 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.011
                 T--HHHHHHHHTSSHHHHHH CS
      TetR_N  16 attvreIAkrAGvskgalYr 35 
                  +t++e+Ak+ Gv + ++ r
  CCG92996.1 349 PLTMSEVAKKTGVHETTVSR 368
                 589**********9999876 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.32   2.1e+02       5      22 ..     216     233 ..     214     249 .. 0.84
   2 ?   10.0   0.0    0.0011      0.74       2      25 ..     350     373 ..     349     377 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.32
      HTH_17   5 eEaAelLgvsrstvyrli 22 
                 +E+A+ L+vs + v++ +
  CCG92996.1 216 NEIAKQLKVSLKQVQEAV 233
                 79**********999877 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0011
      HTH_17   2 ltveEaAelLgvsrstvyrlirrg 25 
                 lt +E+A+  gv+++tv r i ++
  CCG92996.1 350 LTMSEVAKKTGVHETTVSRAIANK 373
                 89*****************99765 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       7.9   5.3e+03      13      24 ..     148     159 ..     139     161 .. 0.76
   2 ?   -1.2   0.1       3.4   2.3e+03       5      17 ..     219     231 ..     216     233 .. 0.61
   3 ?   12.8   0.0   0.00014     0.096      10      32 ..     350     372 ..     348     378 .. 0.88
   4 ?   -1.7   0.1       4.7   3.1e+03      13      29 ..     429     446 ..     425     447 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7.9
                 HHHHHHHTSSHH CS
       HTH_3  13 eeLAeklGvsrs 24 
                 ee+A  lG+++s
  CCG92996.1 148 EEIATDLGMPYS 159
                 788888888877 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.4
                 HHHTTHHHHHHHH CS
       HTH_3   5 RkqlglsqeeLAe 17 
                  kql+ s+++++e
  CCG92996.1 219 AKQLKVSLKQVQE 231
                 4666677777666 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHTSSHHHHHHHHTT CS
       HTH_3  10 lsqeeLAeklGvsrstisriEnG 32 
                 l++ e+A+k+Gv+ +t+sr + +
  CCG92996.1 350 LTMSEVAKKTGVHETTVSRAIAN 372
                 7999**************97766 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 4.7
                 HHHHHHHT.SSHHHHHHH CS
       HTH_3  13 eeLAeklG.vsrstisri 29 
                 e LA++   + r+ti+++
  CCG92996.1 429 EALAKMGIkMARRTIAKY 446
                 556666667999999998 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.11        75      23      46 ..     144     167 ..     141     170 .. 0.87
   2 ?    2.5   0.0       0.2   1.3e+02      23      44 ..     212     233 ..     211     238 .. 0.83
   3 ?    4.5   0.0     0.046        31      25      44 ..     351     370 ..     348     373 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.11
      HTH_10  23 rvtlkeLAkelGIskstlsehLrk 46 
                 r++l+e+A +lG   s ++e L+ 
  CCG92996.1 144 RAELEEIATDLGMPYSLIEEALSL 167
                 789**********99999999875 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.2
      HTH_10  23 rvtlkeLAkelGIskstlsehL 44 
                 r + +e+Ak+l +s   ++e +
  CCG92996.1 212 RKKFNEIAKQLKVSLKQVQEAV 233
                 56789*********99998875 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.046
      HTH_10  25 tlkeLAkelGIskstlsehL 44 
                 t++e+Ak+ G+ ++t+s  +
  CCG92996.1 351 TMSEVAKKTGVHETTVSRAI 370
                 789************99765 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00036      0.24       2      43 ..     327     371 ..     325     372 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00036
                 HHHHHHHHHHCT..TTC.EEEEEHHHHHHHHHTTSSHHHHHHHHH CS
   HTH_Crp_2   2 RlArfLlrlaer..agg.eielpltqeelAsmlGltretvsrils 43 
                 R+A  +++ +++  + g  +  plt+ e A   G++  tvsr+++
  CCG92996.1 327 RVAEAIVESQQEffQHGpGFLKPLTMSEVAKKTGVHETTVSRAIA 371
                 8888898854443322466767********************985 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0       0.3     2e+02      17      33 ..     217     233 ..     207     240 .. 0.85
   2 ?    7.6   0.0    0.0057       3.8      14      33 ..     351     370 ..     344     372 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.3
      HTH_29  17 qiAkllglsrrtvyrwl 33 
                 +iAk+l +s ++v+ ++
  CCG92996.1 217 EIAKQLKVSLKQVQEAV 233
                 8***********98766 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0057
      HTH_29  14 tvsqiAkllglsrrtvyrwl 33 
                 t s++Ak +g++++tv r++
  CCG92996.1 351 TMSEVAKKTGVHETTVSRAI 370
                 5689**************98 PP

>> HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.051        34       6      29 ..     214     237 ..     210     239 .. 0.88
   2 ?    5.3   0.0     0.033        22       3      25 ..     348     370 ..     347     372 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.051
  HU-CCDC81_euk_2   6 nytelaaaaglsrdvVescvqetf 29 
                      +++e+a+++++s ++V+ +v  + 
       CCG92996.1 214 KFNEIAKQLKVSLKQVQEAVATIR 237
                      699****************97765 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.033
  HU-CCDC81_euk_2   3 vplnytelaaaaglsrdvVescv 25 
                      +pl ++e+a+++g++  +V +++
       CCG92996.1 348 KPLTMSEVAKKTGVHETTVSRAI 370
                      6899***************9998 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.5   4.3e+03      28      46 ..     148     166 ..     146     170 .. 0.83
   2 ?    5.0   0.0     0.029        19      27      46 ..     215     234 ..     195     239 .. 0.82
   3 ?    4.1   0.0     0.054        36      23      46 ..     349     371 ..     346     372 .. 0.90
   4 ?   -1.1   0.0       2.3   1.6e+03      39      50 ..     403     414 ..     400     432 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.5
                 HHHHHHHTS-HHHHHHHHH CS
        GntR  28 reLaaefgVsrttvReALr 46 
                 +e+a+ +g   + + eAL+
  CCG92996.1 148 EEIATDLGMPYSLIEEALS 166
                 7999999999999999997 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.029
                 HHHHHHHHTS-HHHHHHHHH CS
        GntR  27 ereLaaefgVsrttvReALr 46 
                  +e+a++++Vs   v+eA  
  CCG92996.1 215 FNEIAKQLKVSLKQVQEAVA 234
                 58****************75 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.054
                 B---HHHHHHHHTS-HHHHHHHHH CS
        GntR  23 kLPsereLaaefgVsrttvReALr 46 
                 +L + +e+a++ gV  ttv +A+ 
  CCG92996.1 349 PL-TMSEVAKKTGVHETTVSRAIA 371
                 57.889****************96 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHH CS
        GntR  39 ttvReALrrLea 50 
                 +t+ e++ rL +
  CCG92996.1 403 QTIKESIERLIR 414
                 566666666644 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.3   1.5e+03      24      43 ..     215     234 ..     206     239 .. 0.84
   2 ?    9.4   0.0    0.0015      0.97      20      43 ..     346     371 ..     328     372 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.3
                 HHHHHHHHTSSHHHHHHHHH CS
      MarR_2  24 vgelarrlglsksavsrilk 43 
                  +e+a+ l++s   v+ +++
  CCG92996.1 215 FNEIAKQLKVSLKQVQEAVA 234
                 579*******9988888876 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0015
                 S..EEEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2  20 r..dltvgelarrlglsksavsrilk 43 
                    +lt++e+a+++g+   +vsr+++
  CCG92996.1 346 FlkPLTMSEVAKKTGVHETTVSRAIA 371
                 25569******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3414.56
//
Query:       CCG92997.1  [L=262]
Description: Metal-dependent hydrolase of the beta-lactamase superfamily [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-23   82.0   0.0    4.8e-23   81.7   0.0    1.1  1  Lactamase_B_2  Beta-lactamase superfamily domain
    8.2e-15   55.3   0.0    1.2e-14   54.8   0.0    1.4  1  Lactamase_B    Metallo-beta-lactamase superfamily
     0.0015   18.0   0.0     0.0023   17.4   0.0    1.3  1  Lactamase_B_6  Metallo-beta-lactamase superfamily domain
     0.0021   18.0   0.0     0.0045   16.9   0.0    1.5  1  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   1.1e-26   4.8e-23       2     192 ..      24     208 ..      23     220 .. 0.85

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 1.1e-26
                    EEEES--TTHHHH..HTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSE CS
  Lactamase_B_2   2 riLiDagpdlrqq..alralqPvelrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvheldwges 95 
                    r+L+D+g  +     +l       l   l++i+++++th+H DH+ gl+ l ++ p  +ply+++ +++ l++ ++   l+e+ av+++++++g +
     CCG92997.1  24 RFLLDPGIRFKHLaiQLAN-----LNIPLESINGIFITHEHSDHVIGLPVLLKRIP--FPLYCNELTWKSLKKMMD---LKEK-AVDWKPFEPGCN 108
                    89*******6544221222.....3344779**********************777..****************75...5566.899********* PP

                    EEECSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEECTTEEEEEESS-S---HHHHHHHCT-SEEEEE-S-SSTTHHHH...............HH CS
  Lactamase_B_2  96 felgdggleitatparhksgrrldrnagdtlGlriegggkrvyyigDtgyipeeigerlggadllllditayeddemir...............hm 176
                    + l+  ++ei+ +p++h+++          +G+++  ++ ++  ++D+gyi++ ++e++ g+  ++l+ +  +d +  +               ++
     CCG92997.1 109 IVLD--EIEIESFPVPHDAAD--------PVGFLFHHSKGTIGLLTDLGYITKLVREKILGVHTMILESN--HDLSLLQtdtkrpwsvkqriisRH 192
                    ***9..589***********9........*************************************9977..444444456888899********* PP

                    T---STSHHHHCTTSS CS
  Lactamase_B_2 177 gHltpeeaveaaadlg 192
                    gHl+ e ++e+a++l 
     CCG92997.1 193 GHLSNEATAEIATQLV 208
                    ***********99885 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   2.6e-18   1.2e-14       5      87 ..      12      92 ..       8     194 .. 0.80

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 2.6e-18
                 SSEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHH CS
  Lactamase_B  5 pvnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeea 87
                  +n+yl+e+d+  +L D+G+      +   la l ++++ +  +++TH H+DH+ gl+ l ++ ++p +++++++++l++ + 
   CCG92997.1 12 KGNAYLLETDKFRFLLDPGIRFKHLAIQ--LANLNIPLESINGIFITHEHSDHVIGLPVLLKRIPFPLYCNELTWKSLKKMMD 92
                 68*********************99997..8******************************************9999887666 PP

>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.2e-07    0.0023       1      59 [.      17      73 ..      17      86 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.2e-07
  Lactamase_B_6  1 lLeldnvkiLlDvGwdeskvslesalkelekviptvdliLLshatlehlGayallyakf 59
                   lLe d++++LlD+G + +++ +  +l++l+  +++++ i ++h  ++h+ ++++l++++
     CCG92997.1 17 LLETDKFRFLLDPGIRFKHLAI--QLANLNIPLESINGIFITHEHSDHVIGLPVLLKRI 73
                   79**************987766..69999999******************9*9998775 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     1e-06    0.0045       7     119 ..      13     150 ..      11     166 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1e-06
  Lactamase_B_3   7 hnsflletagarilvDPf........kanlgyeppaeeaDlvlisqaledHah..letlkql.......................aenvkvleege 69 
                     n++llet+  r l+DP+        +  +++++p e+++ + i+++++dH    +  lk++                       a + k  e+g 
     CCG92997.1  13 GNAYLLETDKFRFLLDPGirfkhlaiQ-LANLNIPLESINGIFITHEHSDHVIglPVLLKRIpfplycneltwkslkkmmdlkekAVDWKPFEPGC 107
                    589***************887665431.45666777***************752255566668888888777777666665555544555555577 PP

  Lactamase_B_3  70 slevggleiravatshdavggsergenngflleqdgltiyhlGhlahels 119
                    ++ ++++ei++++  hda         +gfl++ ++ ti+ l +l++ ++
     CCG92997.1 108 NIVLDEIEIESFPVPHDAAD------PVGFLFHHSKGTIGLLTDLGY-IT 150
                    89999999999999998663......377888888888888888877.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1924.52
//
Query:       CCG92998.1  [L=98]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.021   15.1   0.1       0.08   13.2   0.1    1.9  2  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   4.4e-06      0.08      20      59 ..      16      52 ..       4      74 .. 0.83
   2 ?   -0.0   0.0     0.059   1.1e+03      23      32 ..      65      74 ..      57      80 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.4e-06
                H--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHH CS
      ANAPC3 20 tespedayllAlclylngqykrAyellrkaklnskslgcr 59
                + s+ +a l Al + + gq+ rA++l++++   + +  c+
  CCG92998.1 16 PPSSLSAPLQALFYEKKGQWARAHNLIQRH---EDTDSCW 52
                4555667789********************...4555555 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.059
                HHHHHHHHHH CS
      ANAPC3 23 pedayllAlc 32
                p++ y++A +
  CCG92998.1 65 PNSKYWYARA 74
                7889999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 790.62
//
Query:       CCG92999.1  [L=231]
Description: Protein-disulfide isomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-30  103.9   0.0    1.2e-29  103.6   0.0    1.1  1  Thioredoxin_4  Thioredoxin
    1.7e-08   34.4   0.1    1.9e-05   24.6   0.0    2.1  2  DSBA           DSBA-like thioredoxin domain
    0.00069   19.3   0.2      0.015   15.0   0.0    2.1  2  Thioredoxin_5  Thioredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.0     2e-33   1.2e-29       5     165 ..      55     220 ..      52     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 2e-33
                    SEEES-TT-SEEEEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEE-..---STTTHHHHHHHTT--TTHHHHHHHHHHHHTHHHHTTS-.. CS
  Thioredoxin_4   5 diviGnpdApvtvieyedlrCphCakfeeeveklleeyidtGkvkfiirdfpldkekeslkaamaarcageespeaflaikallysqqeewaes.. 98 
                    d++ G+ +Apv++iey d++Cp Ca++   +++l+++y   +k++ iir+ p   + e++ a+maa++ag ++ +++++++ ll +q+e+  +s  
     CCG92999.1  55 DWIQGDRNAPVVIIEYIDFECPICAAYYPILQELKRKY--GDKLSWIIRHNPSISHPEAFPASMAAEAAGRQG-KFWEMVNLLLTNQKEWSFKSsc 147
                    799***********************************..88******************************9.6666666666666666666687 PP

                    ...HHHHH.....HHHHHTS-----...--HHHHHHHHHHHHHHT--SS-EEEETTEEE-TT--HHHHHHHHT CS
  Thioredoxin_4  99 ...lkelaaealdkdekfeacleee...kldalveaeskeakkagiestPtfiingekveepqtyeelkalid 165
                         ++a++ + ++e+f+++l+      l++ + a+  +a + g+ + P f+ingek+++p++ ee+++li+
     CCG92999.1 148 teaFLQYAKKLGLNEEQFKKDLQGVegiPLRKRILADCLSAIRVGVDGNPNFFINGEKISNPSNLEEFSTLIE 220
                    655445667777779999998854412279******************************************8 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1   0.00033         2       1      31 [.      66      97 ..      66     106 .. 0.82
   2 !   24.6   0.0   3.1e-09   1.9e-05      93     190 ..     115     217 ..      99     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00033
                EEEEEEBTTBHHHHHHHHHHHHHHHHC.CTEE CS
        DSBA  1 tvdeffDvlCPyCylgkerleklaars.pdvk 31
                +++e+ D+ CP C +  + l++l +++ ++++
  CCG92999.1 66 VIIEYIDFECPICAAYYPILQELKRKYgDKLS 97
                589*********************99933344 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 3.1e-09
                 HHHHHHHHGHHHHHHHHHHHHHTSSS-TSSHHH....HHHHHHHTTS.HHHHHHHHTSHHHH...HHHHHHHHHHHHTT-SSSSEEEETTCEEEESSSS CS
        DSBA  93 llaagaeglaekvvrelfealwsegqaitddqe....llevaekaGldaeeldealeseavk...eavrentaaaqslgvtGvPtvvvdgkrmvfGadr 184
                  +aa+a+g  + +++e+ + l++++++ + +++    +l+ a+k+Gl+ e+++++l++ + +   + +  +  +a+++gv G P ++++g+  ++  ++
  CCG92999.1 115 SMAAEAAG-RQGKFWEMVNLLLTNQKEWSFKSScteaFLQYAKKLGLNEEQFKKDLQGVEGIplrKRILADCLSAIRVGVDGNPNFFINGE-KISNPSN 211
                 56666666.46899999999999999887766655559999****************9776422277888999*****************9.8887777 PP

                 HHHHHH CS
        DSBA 185 ldtlad 190
                 l+ +  
  CCG92999.1 212 LEEFST 217
                 777765 PP

>> Thioredoxin_5  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.018   1.1e+02       3      30 ..      70      97 ..      68     108 .. 0.87
   2 !   15.0   0.0   2.5e-06     0.015      73     163 ..     110     201 ..     100     213 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.018
  Thioredoxin_5  3 FidPlcseCweiEpelkklkveygekik 30
                   +id  c+ C +  p+l+ lk +yg+k++
     CCG92999.1 70 YIDFECPICAAYYPILQELKRKYGDKLS 97
                   78889*******************9986 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.5e-06
  Thioredoxin_5  73 ssYlaslaiKAAelQgkkk.grkFLrklqealflekkniskeellleiaekaglDveefkeDleskla...kkafqcDlklakemgvtevPtlvf 163
                    + ++as+a  AA  Qgk     ++L++ q++      + s++e  l+ a+k gl+ e+fk+Dl+        k   +D   a  +gv+  P +++
     CCG92999.1 110 EAFPASMAAEAAGRQGKFWeMVNLLLTNQKEWSF---KSSCTEAFLQYAKKLGLNEEQFKKDLQGVEGiplRKRILADCLSAIRVGVDGNPNFFI 201
                    568999**********964144555555555532...33445799******************97643111455556666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1742.80
//
Query:       CCG93000.1  [L=344]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-24   85.4   0.0    5.3e-24   84.7   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
    1.4e-18   67.7   0.0    2.2e-18   67.0   0.0    1.3  1  Glyco_trans_1_4  Glycosyl transferases group 1
    9.2e-14   51.8   0.0    1.5e-13   51.1   0.0    1.5  1  Glyco_transf_4   Glycosyltransferase Family 4
    1.6e-06   28.6   0.0    2.6e-06   28.0   0.0    1.3  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    4.7e-05   23.7   0.0    0.00012   22.4   0.0    1.7  2  Glyco_trans_1_2  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.081   13.0   0.0       0.18   11.8   0.0    1.5  1  Glyco_trans_4_2  Glycosyl transferase 4-like


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   1.8e-27   5.3e-24      15     160 ..     172     313 ..     166     322 .. 0.84

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 1.8e-27
                      -EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES...STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS.BSS CS
  Glycos_transf_1  15 kkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG..ngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis.Egf 105
                        +i+++gr+++eKgvd +++ ++      +  vkl ia   +  + ++++kl  e   ++n+++lge+ ++++ ell  a ++v+p  + E+f
       CCG93000.1 172 SDYIVFLGRISPEKGVDDALQIAR------KAGVKLKIAArvGLGDDAYFEKLLPEF-KKENIEYLGEITDKEKNELLGGALALVFPVCWpEPF 258
                      56899*******************......467777776654344455555554554.5599******************************** PP

                      -HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSH..H CS
  Glycos_transf_1 106 GivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairkllede..e 160
                      G++ +E+ma+g+pvia+  g ++evv +g tG++vk +  ++++ a+r++ + +  +
       CCG93000.1 259 GLSMIESMACGTPVIAYPCGSIPEVVDHGITGWIVKDV--DEAVGALRQIHKIDrkK 313
                      ************************************99..88888888888776323 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   7.2e-22   2.2e-18       3     131 ..     174     306 ..     172     308 .. 0.81

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 7.2e-22
                      EEEEES---GG.GTHHHHHHHHHHHH.HHEEEEE...ES---..HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--...---SHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkkdvrlvi...vGdgprpeeleelaa..gleerveftGfv..edlaellaaadvfvaPs...egfglk 86 
                       i+f+Gr++ ++kgvd  l+ + +     v+l i   vG g +++ +e+l+   + +e++e++G++  ++++ell  a  +v+P    e fgl+
       CCG93000.1 174 YIVFLGRIS-PEKGVDDALQIARKAG---VKLKIaarVGLG-DDAYFEKLLPefK-KENIEYLGEItdKEKNELLGGALALVFPVcwpEPFGLS 261
                      79******5.56*****999996655...444441113444.3357776664343.488*******7556************************ PP

                      HHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHH CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvggiaevv..gengllvppgdpealaeailrL 131
                      ++E+ma+g+pv+a ++g i+evv  g +g++v+  d+++ + a+ ++
       CCG93000.1 262 MIESMACGTPVIAYPCGSIPEVVdhGITGWIVK--DVDEAVGALRQI 306
                      ****************99**************9..999988888775 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   5.1e-17   1.5e-13       1     109 [.      18     126 ..      18     172 .. 0.76

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 5.1e-17
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplp.llkrllrslaflrrlrrllkre.kpDvvHahspaalgaallalrr 93 
                     +GG er + +L+++L  +GheV+++++gd++ +++    +  +pr  +    + +  s+ +++ l +++k+  ++D++H h+ ++++      rr
      CCG93000.1  18 YGGTERIISYLTEELVSQGHEVSLFASGDSKTSARL---ISIIPRALWEdVTPCANPSMYHILLLEEVIKHKeEFDIIHFHTDFFHFPI---FRR 106
                     7*******************************9999...4444444433033334455667778888887667*********9998766...354 PP

  Glyco_transf_4  94 rlgiplVltvHglye.....k 109
                       ++p+ +t Hg ++     +
      CCG93000.1 107 -MNVPHLTTPHGRMDfpeyiR 126
                     .8***********97655541 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   8.6e-10   2.6e-06       1     107 [.      19     119 ..      19     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 8.6e-10
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrpspladla..alralrrllrqrrerpdvvhahs.ptaglaarla 91 
                      gG +r +  l ++L+ +GheV ++++++   +     + + +++  +     p a+++  ++  l++++  ++e +d++h h+ +       + 
       CCG93000.1  19 GGTERIISYLTEELVSQGHEVSLFASGDSKTSA----RLISIIPRALWEDVTPCANPSmyHILLLEEVI-KHKEEFDIIHFHTdFFHF---PIF 104
                      899**********************97766666....67777766666555677877644788999999.8***********966333...356 PP

  Glyco_trans_4_4  92 rrrrgiplvvtlhgll 107
                      r r ++p++ t+hg+ 
       CCG93000.1 105 R-RMNVPHLTTPHGRM 119
                      6.889********843 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.5   1.4e+04      34      50 ..      30      46 ..      28      48 .. 0.81
   2 !   22.4   0.0   4.1e-08   0.00012      10      69 ..     257     317 ..     245     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.5
  Glyco_trans_1_2 34 eelftpgkevilfedle 50
                     eel++ g+ev lf++ +
       CCG93000.1 30 EELVSQGHEVSLFASGD 46
                     67888999999999765 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 4.1e-08
  Glyco_trans_1_2  10 spnlrlfEaaacGafaltddaegleelftpgkevilfedleelaekirylla.npeerrai 69 
                       + l + E +acG+++++ +  +++e ++ g ++ +++d++e++ ++r+ ++ +++++r++
       CCG93000.1 257 PFGLSMIESMACGTPVIAYPCGSIPEVVDHGITGWIVKDVDEAVGALRQIHKiDRKKCRQR 317
                      5677899************99****************************988888887765 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.9e-05      0.18      16      82 ..      28      96 ..      21     132 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.9e-05
  Glyco_trans_4_2 16 lakeLakrgyeVhvitpkkgakdeleaegihvhrl...kvdrkgpleylk.afklkklik.kikPDvvhahy 82
                     l +eL ++g+eV+++ +++++   + a  i +++    ++ +  +   +  ++ l ++ik k+++D++h h+
       CCG93000.1 28 LTEELVSQGHEVSLFASGDSK---TSARLISIIPRalwEDVTPCANPSMYhILLLEEVIKhKEEFDIIHFHT 96
                     5689*************9993...3344454554422232234466666546677777764899*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2778.69
//
Query:       CCG93001.1  [L=126]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-14   52.5   0.0      5e-14   51.9   0.0    1.3  1  DUF302    Domain of unknown function DUF302
  ------ inclusion threshold ------
      0.096   12.9   0.4        8.2    6.7   0.1    2.3  2  TAF       TATA box binding protein associated factor (TAF)


Domain annotation for each model (and alignments):
>> DUF302  Domain of unknown function DUF302
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   5.6e-18     5e-14       1      63 []      33      95 ..      33      95 .. 0.94

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 5.6e-18
                EEHHHHHHCTT-S--S-EEEEEEE-HHHHHHHHCC-GGGGGG-SEEEEEEEETTEEEEEEE-H CS
      DUF302  1 iDvqatlkkklgedlrpykilgaCnPklatealqadpeiglllPcrvvVyekdgkttvsyvdP 63
                +D+++tl+ k+     ++ il++C+Pk+a  +l+++pe+++ lPcr+++yek++k  v+++ P
  CCG93001.1 33 HDISKTLEIKGFPISYQCLILEICSPKFARIVLEKNPEVSTALPCRIAIYEKKDKRIVATLSP 95
                69*****99999999************************************999988888766 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0051        46      41      65 ..      14      39 ..       2      40 .. 0.69
   2 ?    6.7   0.1   0.00091       8.2      28      43 ..     109     124 ..      98     126 .] 0.85

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0051
                HHHHHHHHHHTT-.SSB-HHHHHHHH CS
         TAF 41 vqeaakfmrhskR.qkLtvaDvdsAL 65
                 +ea+  + ++k   +Ltv+D+++ L
  CCG93001.1 14 LKEALEEKSKAKNfGVLTVHDISKTL 39
                4555555555554259******9987 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00091
                 HHHHHHHHHHHHHHHH CS
         TAF  28 lLaedveyrlkeivqe 43 
                  +ae+ve  lkei+qe
  CCG93001.1 109 KIAEEVENILKEIMQE 124
                 69*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 1106.75
//
Query:       CCG93002.1  [L=611]
Description: Ribonucleotide reductase of class III (Anaerobic), large subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-186  622.1   0.0   1.2e-186  621.9   0.0    1.0  1  NRDD       Anaerobic ribonucleoside-triphosphate reductase
  ------ inclusion threshold ------
       0.08   13.1   0.2       0.17   12.0   0.2    1.5  1  DiS_P_DiS  Bacterial Peptidase A24 N-terminal domain


Domain annotation for each model (and alignments):
>> NRDD  Anaerobic ribonucleoside-triphosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  621.9   0.0  1.3e-190  1.2e-186       1     561 []      29     603 ..      29     603 .. 0.96

  Alignments for each domain:
  == domain 1  score: 621.9 bits;  conditional E-value: 1.3e-190
                 .XHTTHHHHHHHHHHHHHHHHHHHH-H..HHHHHHHHHHHTTSEEETTGGGTTT.S--EEE--SHHHHHH-CTT-SSS...-B---SHHHHHHHHHHHH CS
        NRDD   1 enanvdskslsglrlklasevskeyalkkllpkevaeaheegdiHiHDldylallttyClgidlkdlleeGlktgngv...srppkhietalalavnil 96 
                 en+n+ ++sl+gl+ +++s++sk+y+l+k++p++v+ea e+gdiHiH l   ++l +yC+g+dl dlle+G+ +g +    s pp h+++al++++n++
  CCG93002.1  29 ENSNM-TYSLQGLNFYISSKISKSYWLHKIYPHDVKEAFEQGDIHIHNL---QVLGVYCMGWDLVDLLEKGF-MGAAAkleSGPPLHLSSALNQIINFF 122
                 8****.*******************************************...55567***************.44444699****************** PP

                 HHHHTSSSS-EEETTHHHHHHHHHHHHHHTTSS-GHHHHHHHHHHHHHHHTTS-S..SSSS---EEEEEE.-HH......................... CS
        NRDD  97 qtlqneqaGgqaissfdtylapfvrkdyekklkkltkkeikqamqefvynlntlpsrrGaQvpFtninlgldtp.................tegrfee. 177
                 +tlq e+aG+qa+s+fdt+l p++r+d      +l++k+++q++q+f++nln +p+r G+Q+pFtn++++l  p                 t+g+f+e 
  CCG93002.1 123 YTLQGEAAGAQALSNFDTLLSPYIRYD------NLKEKDLRQQLQQFLFNLN-VPTRVGFQAPFTNLTIDLRPPhffqnepvriggktrreTYGEFQEe 214
                 ***************************......*******************.********************9************************9 PP

                 .......HHHHHTTTTS-HCH----SEEEEEEEEETETTH.....HHHHHHHHHHTTT--EEE........EEES--GGGTT-------....-..S-- CS
        NRDD 178 .kliikallevmleGdgnkgtpftFPilifklkedfnleeedpnydlfklalevtakrgfpyffnlle.dlepedekevasmgCRlrld....egerlg 270
                  +++++ ++e +leGd++ g++ftFPi+++++  +f +++     + +++++++tak+g+pyf n+++ +l+     ev+sm+CRlrld    + +r+g
  CCG93002.1 215 mDFFNRVFCEMFLEGDAR-GRVFTFPIPTYNISSEFPWDS-----KATQALWKMTAKYGIPYFANFINsELKV---DEVRSMCCRLRLDltqlA-RRGG 303
                 ******************.*********************.....9*********************855544...469**********74331.4655 PP

                 -.......EEEEEEEEEEHHHHHH..HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT.-HHH.HTTSS-GE.............EEEEEEE-HH CS
        NRDD 271 g.......rgslgvvtiNlprlaleakgdeekffelLdellelakealeerrkilekllakg.lpflmgkgylksrkkkdeveevlkngtltiGfiGla 361
                 g       +gs+gv+tiNlpr++++ +++e++ff++L++l+elak+ale++rk +e  ++kg +p+  +k ylk  +  +++++++ n+++tiG++G++
  CCG93002.1 304 GlfgsnplTGSIGVITINLPRIGYL-SKNESDFFSRLRDLMELAKKALEAKRKAIEGWMEKGlYPY--SKFYLK--GIYQRFGSYWANHFSTIGLVGMN 397
                 589999******************9.7789************************************..9****9..8999******************* PP

                 HHHHHTTEEEE..-HHHHHHHHHHHHHHHHHHHHHHHHHSS-EEEEE---TTHHHHHHHHH..HH....................HHG-SSSS-TTSSB CS
        NRDD 362 EalkaltgkkigeseeakefalkvlkhmrekadelkeetglnfsleatPaEslsgrfakldkkkfgeipgv.dke.........pyYtNsfhvpvdeki 450
                 Ea+ ++ gk+i +++eak+fa+kvl+ mre +  +++et++n++leatPaE +s+r+a++dk+k+   p++   +         p+YtNs+++pv+ ++
  CCG93002.1 398 EACLNFLGKSI-ADPEAKAFAIKVLDVMREILLSFQKETQNNYNLEATPAEATSYRLARIDKRKY---PQIlVANeeavkkgaaPFYTNSTQLPVNFTT 492
                 ***********.99***************************************************...66654445689999***************** PP

                 -HHHHHHHHHHHTGGGTT-S-EEEEBSS--SSHHHHHHHHH.HHHHTT--EEEEE--EEEETT.--.EESSSB-TTT--BE.EEEEEESSSSEEEHHHH CS
        NRDD 451 slfekikleaefqklttGGailyieldeekknpealeklvk.iakktgigYfsinpkidvCnecgy.kgeiekCpkCgseeevevirRitGYlrpvssw 547
                 ++f ++++++++q  +tGG++l+++l+++ ++pe++ ++v+ +++k++i+Yf+++p++++C+e+gy +ge+ +Cp+Cg  +++ev++R++GYlrpv+ w
  CCG93002.1 493 DPFVALEHQEDLQLRYTGGTVLHFFLGQKIDEPESIGSFVRtVCSKYKIPYFTLTPTFSICPEHGYlSGEQSHCPRCG--KPCEVYSRVVGYLRPVDLW 589
                 ******************************************************************************..88***************** PP

                 HHHHHHHSGG---B CS
        NRDD 548 nkgkkaElkdRvkh 561
                 n+gk++E+k R+++
  CCG93002.1 590 NPGKQEEFKLRKTY 603
                 ************98 PP

>> DiS_P_DiS  Bacterial Peptidase A24 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   1.9e-05      0.17       6      42 ..     528     578 ..     526     584 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.9e-05
   DiS_P_DiS   6 igSFlnvviyrlpk..............kkslvkprSrCpkCghklkwlel 42 
                 igSF+ +v+ ++                ++ l+ ++S+Cp+Cg++ +++  
  CCG93002.1 528 IGSFVRTVCSKYKIpyftltptfsicpeHGYLSGEQSHCPRCGKPCEVYSR 578
                 89***999988544557777777777746699************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4736.32
//
Query:       CCG93003.1  [L=230]
Description: Ribonucleotide reductase of class III (Anaerobic), activating protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-19   69.6   0.0    6.6e-19   68.9   0.0    1.4  2  Radical_SAM  Radical SAM superfamily
    1.7e-11   44.6   0.0    2.6e-11   44.0   0.0    1.3  1  Fer4_12      4Fe-4S single cluster domain
    1.9e-09   37.6   0.1    4.3e-09   36.5   0.0    1.6  1  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   1.1e-22   6.6e-19       1     150 [.      21     160 ..      21     178 .. 0.88
   2 ?   -3.7   0.0       2.3   1.4e+04      78     102 ..     196     219 ..     181     222 .. 0.69

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 1.1e-22
                  EEEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpdeeklerll 98 
                  vv+t+gCn+rC++C++p+ v +e +g  +++ ++ + +++ +  k +++v+++ggep+ + d++e++  ++k    g+ + + tng +  +e+le++ 
   CCG93003.1  21 VVFTQGCNFRCPYCYVPQLVIPEQYGTLVPMAKVWHFLEARR-AK-IDGVVITGGEPTIQEDLEEFVWGIKKM---GFLVKLDTNGSH--PEVLEKMI 111
                  689********************************9999996.55.**************************9...************..6******* PP

                  HTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  99 elgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdriv 150
                  +   d+v+++ +a+ ++ + + ++ + + +++ +++ +l + + +   +r++
   CCG93003.1 112 KII-DYVAMDFKAPLEK-YTESTRSTIEKKQITQSISLLLKGNTD-YEFRTT 160
                  *66.*************.*****9999999999999999888666.444444 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.3
                  EEEEEEECSSCHGHHHHHHHHHTT- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  78 iritvetngtlpdeeklerllelgv 102
                  +  +++t ++ +  +++e+ +++ +
   CCG93003.1 196 VDPSYSTKHPID-FDIIEKWKNYAL 219
                  556677777776.778888777765 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   4.3e-15   2.6e-11       5     136 ..      16     140 ..      12     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 4.3e-15
     Fer4_12   5 G.vrlslfvsgCnlsCkgCfnketwsfk.sgkeftkelleeiiedlkkesiegltllGGEPllpenaeallelvkevkeekpekdiwlytgytleelsk 101
                 G + +++f++gCn++C++C+ +++  ++ +g+ ++ +   + +e +   +i+g++++GGEP     +e+l e+v  +k+ ++  + + ++g+  e l+ 
  CCG93003.1  16 GkTAAVVFTQGCNFRCPYCYVPQLVIPEqYGTLVPMAKVWHFLE-ARRAKIDGVVITGGEPTI---QEDLEEFVWGIKKMGF-LVKLDTNGSHPEVLE- 108
                 536789**************999886653888888666656554.457999************...9**************9.68999****999997. PP

     Fer4_12 102 kekeellkeid.vlvdGkfeesledeslrfrgssnq 136
                     +++k id v+ d k   ++ +es+r    ++q
  CCG93003.1 109 ----KMIKIIDyVAMDFKAPLEKYTESTRSTIEKKQ 140
                 ....57777775577777777777777766665555 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   7.2e-13   4.3e-09       3      92 ..      22     104 ..      20     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 7.2e-13
     Fer4_14   3 vrlsgCnlsCkgCd.nketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletngtle 92 
                 v + gCn+ C+ C+  +    +++g+      + ++ + l++++ ki+g+v+tGGeP +    ++l ++v  +k+ +  + ++l tng+  
  CCG93003.1  22 VFTQGCNFRCPYCYvPQLVIPEQYGTL---VPMAKVWHFLEARRAKIDGVVITGGEPTIQ---EDLEEFVWGIKKMG--FLVKLDTNGSHP 104
                 4579**********4444445555555...555566666899999************965...89999999999999..999****99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1658.28
//
Query:       CCG93004.1  [L=146]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-09   37.4   0.0    3.7e-09   37.0   0.0    1.2  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
  ------ inclusion threshold ------
      0.045   13.9   0.0      0.083   13.1   0.0    1.5  2  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   4.2e-13   3.7e-09       1     143 []       1     143 [.       1     143 [. 0.80

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 4.2e-13
                      EEEEEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSE..STSSSTTTEEEEECCCS..SEEEEEEEEEETTTTEEEEEE.E.SSS-T.SE CS
  Polyketide_cyc2   1 mvkvtvsvviaappekVwalvsdfenwprWhpevarveleg..gggpargvegtvrvggr..gtvreelvevdpegrllsyri.vkpvpva.ny 88 
                      m +++++++i+a  e+ w+++s+f+++p W p++++    +   g++    +  +++ +     ++ ++++++p + l++++     +p++ ++
       CCG93004.1   1 MYTISTEIEIKAKKEALWDCLSNFSAYPDWNPFIKKIWFKKfeSGQT---LRLLIQAPSSfpVLMTGKILMISP-PSLIRWECyL-IHPFFlKG 89 
                      6899*********************************7776523444...44888888878766**********.********52.46666357 PP

                      EEEEEEEECCETEEEE.EEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  89 vatwtvtpdgggtrvt.wtgefdagplggpfekpaaakavkgdleagLerLkarle 143
                        t+++t+  + + +   + +  ++++  p+   +++k v++ +e    +Lk rle
       CCG93004.1  90 IHTLEWTQHRPFSVIFlHHET--FNGILLPILWKMMEKRVRKGFESMNNALKNRLE 143
                      777777777775543312223..36899999**********************998 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.3e-06     0.083       2      27 ..      11      36 ..      10      66 .. 0.91
   2 ?   -2.5   0.0       0.6   5.4e+03     115     119 ..     121     125 ..      87     139 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.3e-06
                    SS-HHHHHHHHTTTGGCCSCCCCEEE CS
  Polyketide_cyc  2 papadqvyalvadvesypeflphcss 27
                    +a  + +++ +++++ yp+++p++++
      CCG93004.1 11 KAKKEALWDCLSNFSAYPDWNPFIKK 36
                    678899****************9985 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.6
                     HHHHH CS
  Polyketide_cyc 115 gqvae 119
                     +++++
      CCG93004.1 121 KMMEK 125
                     22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1041.92
//
Query:       CCG93005.1  [L=88]
Description: hypothetical protein MFUM_890006 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 640.82
//
Query:       CCG93006.1  [L=57]
Description: hypothetical protein MFUM_890007 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      166  (0.00925874); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.45
# Mc/sec: 383.17
//
Query:       CCG93007.1  [L=126]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 812.74
//
Query:       CCG93008.1  [L=194]
Description: Carbonic anhydrase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-11   44.1   0.0    3.9e-11   43.5   0.0    1.3  1  Pro_CA    Carbonic anhydrase


Domain annotation for each model (and alignments):
>> Pro_CA  Carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   2.2e-15   3.9e-11       2     156 .]      34     180 ..      33     180 .. 0.70

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 2.2e-15
                 EEEEETTTTS-HHHHTTS-TTSEEEEEETTG---TT-HHHHHHHHHHHHTS--SEEEEEEETT-HHHHHHHS.HHCCSTTSSHHHHHHHHHHHHHHHCH CS
      Pro_CA   2 lvigCsDSRvppelitdagpGdlFvvrnvgnlvppadssvlaaleyAvevlkvkhivVlGHskCGavkaalk.aekseeeagaidkwlekirealekve 99 
                 ++++C+D+R++p+++ + + Gd  v+rn+g      +++ + +l  + + l++k+  ++ H++CG+ + + +   ++  e++  +++le+ +     v 
  CCG93008.1  34 AILTCMDARLDPAKFAGLKEGDAHVIRNAGGRA---SDDAIRSLVISYKLLGTKEWFIIHHTDCGMETFSDSiM-EDLLEKSLETAVLENGQWKD--VG 126
                 589******************************...999999***********************988443322.21222333333333332221..22 PP

                 HHHHTTS....SHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHTTS-EEEEEEEETTTTEE CS
      Pro_CA 100 eelesek....ekearerlleeenVaeqlenLlekpvvreavekgklkvhGlvydletGev 156
                 + + s +    +  + +     ++V+e + +++++p+v       ++ ++G +yd+++G++
  CCG93008.1 127 KGKGSLEgkyiRWLTIK--NLSQSVVEDVLRVRHHPLVP-----SSIPIYGFIYDVKSGKL 180
                 22222212222222223..34778889999999999998.....4579***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1500.31
//
Query:       CCG93009.1  [L=337]
Description: putative Methylase involved in ubiquinone/menaquinone biosynthesis [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-21   74.8   0.0    1.1e-20   74.0   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    1.4e-18   67.4   0.0    2.9e-18   66.4   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    4.1e-18   65.6   0.0    6.5e-18   65.0   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    9.9e-17   61.3   0.0    1.9e-16   60.3   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
    3.6e-16   59.2   0.0    7.2e-16   58.2   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    3.3e-14   53.4   0.0    1.1e-13   51.8   0.0    1.9  2  Methyltransf_12  Methyltransferase domain
    6.4e-09   35.7   0.0    1.1e-08   34.9   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW
    7.6e-08   32.4   0.0    1.5e-07   31.4   0.0    1.5  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    1.7e-05   24.7   0.2       0.73    9.5   0.1    3.9  3  N6_N4_Mtase      DNA methylase
    6.4e-05   22.6   0.0    0.00012   21.7   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0012   18.6   0.0     0.0019   17.9   0.0    1.3  1  GCD14            tRNA methyltransferase complex GCD14 subunit
     0.0049   16.2   0.1      0.021   14.1   0.0    1.9  2  CMAS             Mycolic acid cyclopropane synthetase
     0.0058   16.5   0.2        5.3    6.8   0.0    2.6  3  Methyltransf_8   Hypothetical methyltransferase
  ------ inclusion threshold ------
      0.016   14.5   0.0      0.029   13.7   0.0    1.5  1  Methyltransf_2   O-methyltransferase domain
      0.029   14.0   0.0      0.052   13.2   0.0    1.4  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
      0.031   13.7   0.0      0.079   12.4   0.0    1.8  1  TehB             Tellurite resistance protein TehB
      0.037   14.2   0.0      0.065   13.3   0.0    1.4  1  FtsJ             FtsJ-like methyltransferase
      0.044   13.4   0.0       0.11   12.0   0.0    1.7  1  NodS             Nodulation protein S (NodS)


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   1.2e-23   1.1e-20       1      94 [.     114     208 ..     114     210 .. 0.95

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 1.2e-23
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseeglkvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      Ld+GcGtGrla++l + +   + ++g+D+s++ +++ak+k ++    ++f+ +  e+l  f+dn fD+v++++v+ ++ d e al ei+R+Lkp
       CCG93009.1 114 LDLGCGTGRLAAYLRELVgpkGWIIGMDPSPYRIEIAKQKMKKG---LSFQLGGSEDLgVFKDNFFDFVYLNSVFYWIRDKETALVEIYRILKP 204
                      8**************8888999***************9999987...79*********66********************************** PP

                      EEEE CS
  Methyltransf_11  91 gGll 94 
                      gG+l
       CCG93009.1 205 GGKL 208
                      **97 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   2.9e-21   2.9e-18       1      97 []     113     206 ..     113     206 .. 0.92

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 2.9e-21
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS.SSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeeglnvefvqgdaedlp.fedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      vLdlGcGtGrl+++l + +g k+ ++g+D+s+  +e+a+++++     ++f+ g  edl  f+d+ fD+v+++ ++ ++   d e+al ei+r+
       CCG93009.1 113 VLDLGCGTGRLAAYLRELVGpKGWIIGMDPSPYRIEIAKQKMK---KGLSFQLGGSEDLGvFKDNFFDFVYLNSVFYWIR--DKETALVEIYRI 201
                      9******************669********************5...369**********879**********65576666..7789******** PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      LkpgG
       CCG93009.1 202 LKPGG 206
                      ****9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   6.6e-21   6.5e-18       7     150 ..     113     258 ..     108     275 .. 0.78

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 6.6e-21
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeierv 100
                      vlDlGCGtG+l+  l e++gpk+ ++G D s+  ie A+++ +    + ++F+ g  e+l   ++d+ fD++  n+v++ + d++ +l ei r 
       CCG93009.1 113 VLDLGCGTGRLAAYLRELVGPKGWIIGMDPSPYRIEIAKQKMK----KGLSFQLGGSEDLGV-FKDNFFDFVYLNSVFYWIRDKETALVEIYRI 201
                      9***************************************766....5667********996.9****************************** PP

  Methyltransf_31 101 lkpggilliedpr......llaelp....akveeeskayevvegak......igt...qkdelyellee 150
                      lkpgg l i++        l    +    + + e +         k      +++   +k++++ell+e
       CCG93009.1 202 LKPGGKLGITSGYkfenspL----LkivnEAIMEVMG--------KefasgeMNEdsfGKEDFKELLKE 258
                      **********9994433331....1222222222222........012222222234466666666655 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   1.9e-19   1.9e-16      21     164 ..     108     265 ..      82     266 .. 0.73

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 1.9e-19
  Methyltransf_23  21 raggrvLdiGcGtGillevlren.gf..svtgvDlspeaveiaekakkaqkdqfdeqeaae.....pqgkfdlIvlrevlehvpdppellrqia 106
                       +g+ vLd+GcGtG+l+ +lre  g    ++g+D+sp  +eia+  +k++k   ++   +e     +++ fd+++l+ v+++++d + +l  i+
       CCG93009.1 108 TPGSFVLDLGCGTGRLAAYLRELvGPkgWIIGMDPSPYRIEIAK--QKMKKGLSFQLGGSEdlgvfKDNFFDFVYLNSVFYWIRDKETALVEIY 199
                      45667***************77646656699***********95..444444443332222333336668************************ PP

  Methyltransf_23 107 tllkpgGylllse....plasl.k.edrllldw.lylvpagrhi.sffsarslkelleeaGlevve 164
                      ++lkpgG l ++      +++l k  +++++++ + ++  g+     f  +++kell+e+G+ +++
       CCG93009.1 200 RILKPGGKLGITSgykfENSPLlKiVNEAIMEVmGKEFASGEMNeDSFGKEDFKELLKESGFLIIH 265
                      *********99986552222224235555555414444444555899999************8875 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   7.3e-19   7.2e-16      39     220 ..     101     268 ..      87     272 .. 0.88

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 7.3e-19
                      HHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-T.TS-T-EEEEEEES-GGG-S- CS
  Ubie_methyltran  39 veklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLp.feddsfDvvtvsfGlrnvtD 131
                      ++kl  v +g+ vlD+ +Gtg la+ l + vg kg ++++D ++  ++++++k+k+     + f  + +e+L  f+d+ fD+v +   +  + D
       CCG93009.1 101 LIKLLKVTPGSFVLDLGCGTGRLAAYLRELVGPKGWIIGMDPSPYRIEIAKQKMKKG----LSFQLGGSEDLGvFKDNFFDFVYLNSVFYWIRD 190
                      567888999********************************************9875....6777889999954899*******999999999* PP

                      HHHHHHHHHHHEEEEEEEEEEEE----SHHHHHHHHHHHH.HHHHHHHHHHS-HHHHHHHHHHHHHS--HHHHHHHHHHTTEEEEEEEE CS
  Ubie_methyltran 132 klkaLkeayrvlkpGGrlvvlefskvelpllsqayelyskevlPvlGkllakdldsyryLvesirafPdqetlkeliedaGfksveyes 220
                      k++aL e+yr+lkpGG+l +    k e+  l +   +    ++ v+Gk +a          e  ++  ++e++kel++++Gf  +++e+
       CCG93009.1 191 KETALVEIYRILKPGGKLGITSGYKFENSPLLK---IVNEAIMEVMGKEFASG--------EMNEDSFGKEDFKELLKESGFLIIHFEQ 268
                      ********************9999999887755...556789999*****998........5556666899999999999999888875 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       8.9   8.9e+03      33      57 ..      11      34 ..       9      43 .. 0.75
   2 !   51.8   0.0   1.1e-16   1.1e-13       1      99 []     114     208 ..     114     208 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 8.9
  Methyltransf_12 33 iedakeklakrennnnnnveleald 57
                     + + +e+l+k++n  + n++ ++++
       CCG93009.1 11 L-AEEERLKKIGNSMFLNYKQQNKN 34
                     5.67889999998777777777666 PP

  == domain 2  score: 51.8 bits;  conditional E-value: 1.1e-16
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklL 93 
                      L++GcGtG+l+++l+e   p   ++g+D+sp  ie ak+k++k        ++l   ++l  ++ + fD v++++v+ +++d++ +l +i++ L
       CCG93009.1 114 LDLGCGTGRLAAYLRELVgPKGWIIGMDPSPYRIEIAKQKMKKGL-----SFQLGGSEDLGVFKDNFFDFVYLNSVFYWIRDKETALVEIYRIL 202
                      8*****************9999999*********99999999866.....34444444444445568*************************** PP

  Methyltransf_12  94 kpgGrl 99 
                      kpgG+l
       CCG93009.1 203 KPGGKL 208
                      ****97 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.1e-11   1.1e-08      11     102 ..     107     202 ..      99     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.1e-11
        MetW  11 ikpgsrvldlGcGdGellellkeekqvdgrGleld..eegv...aecvakGlsviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldellrig 102
                 + pgs vldlGcG G l  +l+e  + +g  + +d     +   ++ ++kGls   g   +dl  f+d+ fd+v l+  +  +r+ ++ l e+ ri 
  CCG93009.1 107 VTPGSFVLDLGCGTGRLAAYLRELVGPKGWIIGMDpsPYRIeiaKQKMKKGLSFQLGG-SEDLGVFKDNFFDFVYLNSVFYWIRDKETALVEIYRIL 202
                 789********************999999755555114444111466899*9987665.689********************************995 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.5e-10   1.5e-07      64     120 ..     100     156 ..      39     169 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.5e-10
                 HHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHH CS
        PCMT  64 lalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkk 120
                  +++ll++++g+ vL++G+G+G l+a l +lvg+kg +++++ ++  +e ak+++kk
  CCG93009.1 100 ELIKLLKVTPGSFVLDLGCGTGRLAAYLRELVGPKGWIIGMDPSPYRIEIAKQKMKK 156
                 46899*********************************************9999987 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.2     2e+02      34      76 ..       6      49 ..       3      80 .. 0.71
   2 !    6.4   0.0    0.0066       6.6     184     230 ..     101     151 ..      98     152 .. 0.83
   3 !    9.5   0.1   0.00073      0.73      25      64 ..     181     238 ..     167     326 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHEEEEEEEEEEE-CCCHHTHHHHHHHHHTT.-E CS
  N6_N4_Mtase 34 flekvlkevrrvLkddgsifiniddseikkelkaladeifg.gf 76
                 +l + l+e  r+ k + s+f+n ++++ +++ ++l++++++ + 
   CCG93009.1  6 RLCNALAEEERLKKIGNSMFLNYKQQNKNSPPFLLLKKQKKkRT 49
                 56667778888999999999999999999944444444444333 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0066
                  HHHHH.S-TT-EEEETT-TTTHHHHHHHHTT-E...EEEEESSHHHHHHHH CS
  N6_N4_Mtase 184 lIkls.tkkgdivlDpFaGSGtTavaakelgrk...fiGieieeeyvelae 230
                  lIkl+   +g+ vlD  +G+G  a++ +el       iG++ +++++e+a+
   CCG93009.1 101 LIKLLkVTPGSFVLDLGCGTGRLAAYLRELVGPkgwIIGMDPSPYRIEIAK 151
                  554432679*********************776677999999999999987 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00073
                  CCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCCHHT..................H CS
  N6_N4_Mtase  25 edsyeeyleflekvlkevrrvLkddgsifiniddseikk..................e 64 
                   +s+ ++++  e  l e++r+Lk++g + i  +++  ++                   
   CCG93009.1 181 LNSVFYWIRDKETALVEIYRILKPGGKLGITSGYKFENSpllkivneaimevmgkefA 238
                  56677899999999****************9999999994444333333333333330 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.2e-07   0.00012      23     148 ..     101     221 ..      97     236 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.2e-07
                 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHT.TC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHHH CS
         MTS  23 LletlpkelsgkvlDlGcGaGvlgaalakes.peaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsNPPfhagkatelavaee 120
                 L++ l+ +    vlDlGcG+G l+a l +   p+  +  +d + + +e+ak+ +++ +l+ ++  s+ l  ++++ fd++  N  f   +++e+a++  
  CCG93009.1 101 LIKLLKVTPGSFVLDLGCGTGRLAAYLRELVgPKGWIIGMDPSPYRIEIAKQKMKK-GLSFQLGGSEDLGVFKDNFFDFVYLNSVFYWIRDKETALV-- 196
                 788888888889***************998625666****************9976.6789999999999999999999999998888887443333.. PP

                 HHHHHHHHEEEEEEEEEEEETTSCHHHH CS
         MTS 121 liaeAkeaLkegGeLliVanrklgyesl 148
                    e  ++Lk+gG+L i    k + ++l
  CCG93009.1 197 ---EIYRILKPGGKLGITSGYKFENSPL 221
                 ...3457788888887766655555555 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.9e-06    0.0019      33      88 ..     102     157 ..      96     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.9e-06
       GCD14  33 imkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefreh 88 
                 i+ L+++pGs v++ G G+g l+ ++   v+P+G +  ++    r+e a++++++ 
  CCG93009.1 102 IKLLKVTPGSFVLDLGCGTGRLAAYLRELVGPKGWIIGMDPSPYRIEIAKQKMKKG 157
                 5679**********************************************999875 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.2e-05     0.021      43      80 ..      90     127 ..      84     157 .. 0.81
   2 ?   -0.8   0.1      0.74   7.4e+02     137     155 ..     263     281 ..     231     288 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHH CS
        CMAS  43 LeeAqlaKldlileklelkpGmtlLdiGcGWGslvrra 80 
                 L   q+ + + +++ l++ pG+ +Ld+GcG G l+ + 
  CCG93009.1  90 LSTPQYIQGKELIKLLKVTPGSFVLDLGCGTGRLAAYL 127
                 6777888889999*******************998765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.74
                 GGGTSGGGHHHHHHHHHHH CS
        CMAS 137 fehvgkenydtffkklkkl 155
                 + h+ +++y ++f+  k++
  CCG93009.1 263 IIHFEQKEYTDYFSSPKEV 281
                 4578888888888776665 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       3.7   3.7e+03     178     206 ..      26      52 ..       8      59 .. 0.49
   2 !    6.8   0.0    0.0054       5.3      62      92 ..     100     129 ..      92     144 .. 0.83
   3 !    6.8   0.0    0.0053       5.3     138     191 ..     192     248 ..     177     261 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.7
                     EEEEEEE--STTEEEEEEEE-SSS-TT-- CS
  Methyltransf_8 178 fevkskdlsnkqfvlfefkkvekkgkkre 206
                     ++ k+++ ++  f+l++ +k  kk  k  
      CCG93009.1  26 LNYKQQNKNSPPFLLLKKQK--KKRTKTY 52 
                     33344444444565554444..4444444 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0054
                     HHHHHHCTS-TTS-EEEES-TT-HHHHH--S CS
  Methyltransf_8  62 viirklkkkkdnlvvadlGcGeakiaeavre 92 
                     ++i+ lk  +++  v dlGcG  ++a   re
      CCG93009.1 100 ELIKLLKVTPGSF-VLDLGCGTGRLAAYLRE 129
                     5677777777765.68**********87765 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0053
                     HHHHHHHHHHEEEEEEEEEEEEGGG-S...-HHHHHHHH.HCTTEEEEEEE--STTEE CS
  Methyltransf_8 138 adflkeanrvlkvGGllkvaevksrfe...svklfaral.tklGfevkskdlsnkqfv 191
                     ++ l e++r+lk+GG l ++    +fe     k++ +a+ + +G e  s +++++ f 
      CCG93009.1 192 ETALVEIYRILKPGGKLGITSG-YKFEnspLLKIVNEAImEVMGKEFASGEMNEDSFG 248
                     66789************98753.34442222344444431456666666666666665 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.9e-05     0.029      29     168 ..      76     214 ..      63     262 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.9e-05
                     HTSSHHHHHHHHHHHHTTHHHHHHHHHHSS-GGG-SEEEEET-TTSHHHHHHHHH-.TT-EEEEEE.-HHHHHHHHHHS-----TTEEEEES.-T CS
  Methyltransf_2  29 ikrdeeerakfnkglqessslvakkvleafdleglkslvDvGGGtGalakaivsay.PtikvivfD.lpeVveaAkehlsageeervefvgG.df 120
                     i++d  e a+  + l+  + + +k++++  ++++ + ++D+G GtG la+   ++  P+  +i +D  p  +e Ak++++ g++ ++   +   +
      CCG93009.1  76 ITNDSLELARLYDKLSTPQYIQGKELIKLLKVTPGSFVLDLGCGTGRLAAYLRELVgPKGWIIGMDpSPYRIEIAKQKMKKGLSFQLGGSEDlGV 170
                     456667777788899999*******************************9998875588889999945889******965554444332221124 PP

                     TTS-----SEEEEESSGGGS-HHHHHHHHHHHHHH--TT-EEEEEE-- CS
  Methyltransf_2 121 fkdslPeaDaillkrvlhDwsdekcvklLkrvkkalpagGkvivveav 168
                     fkd+    D + l++v +   d++    L ++++ l++gGk+ +    
      CCG93009.1 171 FKDNF--FDFVYLNSVFYWIRDKET--ALVEIYRILKPGGKLGITSGY 214
                     55554..599*****9997777764..4779*********98765544 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.2e-05     0.052       3      54 ..     104     155 ..     102     168 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.2e-05
                      HH---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHH CS
  Methyltr_RsmB-F   3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlk 54 
                      lL+  ++ ++lDl ++ G   +++ el+ +kg ++ +d +  R++  ++ +k
       CCG93009.1 104 LLKVTPGSFVLDLGCGTGRLAAYLRELVGPKGWIIGMDPSPYRIEIAKQKMK 155
                      68899999***********************************998887765 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.9e-05     0.079      21      50 ..     100     129 ..      87     220 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.9e-05
                 HHHHHCCCS-S-EEEEES-TTSHHHHHHHH CS
        TehB  21 evveavkivkpgkvldlgcgqgrnslylsl 50 
                 e+++  k+   + vldlgcg gr + yl  
  CCG93009.1 100 ELIKLLKVTPGSFVLDLGCGTGRLAAYLRE 129
                 45555566556679*************964 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.6e-05     0.065      16      58 ..     102     152 ..      93     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.6e-05
                 HT-S-..TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS......H CS
        FtsJ  16 fklfk..pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......a 58 
                  kl+k  pg  v+Dlg+++G  + +l + +g+kg ++++D  p+      +
  CCG93009.1 102 IKLLKvtPGSFVLDLGCGTGRLAAYLRELVGPKGWIIGMDPSPYrieiakQ 152
                 45554449999*****************************99885555432 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011      0.11      46     146 ..     112     212 ..      90     248 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
        NodS  46 dalevGcaaGalterlapyckr...ltvvdvveeaiararervkesshiswivsdvqqfstdekfdlivvaevlyyiedvaelraavrnlvsllapdgq 141
                  +l++Gc +G l+  l  +      +  +d  +  i+ a++++k+    +   s+   + +d+ fd +    v+y+i+d++   +a+ ++ ++l+p+g+
  CCG93009.1 112 FVLDLGCGTGRLAAYLRELVGPkgwIIGMDPSPYRIEIAKQKMKKGLSFQLGGSEDLGVFKDNFFDFVYLNSVFYWIRDKE---TALVEIYRILKPGGK 207
                 58999999998888877665431114445667788999*****996666655544444557899***************97...7999**********9 PP

        NodS 142 lvfGs 146
                 l   s
  CCG93009.1 208 LGITS 212
                 96655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2396.16
//
Query:       CCG93010.1  [L=40]
Description: hypothetical protein MFUM_890012 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       166  (0.00925874); expected 358.6 (0.02)
Passed bias filter:                      121  (0.00674884); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 331.30
//
Query:       CCG93011.1  [L=51]
Description: hypothetical protein MFUM_890013 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       120  (0.00669307); expected 358.6 (0.02)
Passed bias filter:                      117  (0.00652574); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 345.61
//
Query:       CCG93012.1  [L=337]
Description: Phosphoribosylformylglycinamidine cyclo-ligase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-20   74.0   0.0    2.2e-20   73.4   0.0    1.3  1  AIRS_C    AIR synthase related protein, C-terminal domain
    1.3e-15   57.8   0.1    2.2e-15   57.1   0.1    1.4  1  AIRS      AIR synthase related protein, N-terminal domain


Domain annotation for each model (and alignments):
>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   2.5e-24   2.2e-20       2     128 ..     173     314 ..     172     334 .. 0.84

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 2.5e-24
                 TTEEEEEEETSSCTCCHHHHHHHCHHHCTSHTT.......TSEHHHHHHHHHHHHHHHHHHHH.HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECG CS
      AIRS_C   2 pGdvliltgslGlggagtslkrkileeegldds.......avqlgdvlleptliyvkralaal.kglvkaahDvTgGGLlgalaemapasgvgaeidld 92 
                 pGd++i+++s+Gl+ +g+sl+rk+l +e+           +++l+d+lle  + y+ ++  ++   ++k+++++TgGG+ ++l++++p++ v a i+++
  CCG93012.1 173 PGDLIIGLPSSGLHTNGYSLVRKLLFAEKNYNLwdtppgfSRPLVDELLEVHKSYLEELRLLKkLIPIKGIAHITGGGFFENLPRILPDG-VDAIIYAN 270
                 8**************************997655******9999*****99887776666555566************************7.******** PP

                 ...THHHHHHHH.....HHHHHHHCSTTTEEEEEEEHGGHHHHH CS
      AIRS_C  93 ...kvpifdele.....splemllsensGrllvavppeeadavl 128
                     + if+ l      + +e + ++n+G++l+++ ++e ++v+
  CCG93012.1 271 swpIPHIFSFLTslgamTLEEQYSIFNMGIGLCLIISPEFKEVC 314
                 999777888777888999************99987666664443 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.1   2.5e-19   2.2e-15       6      94 .]      57     160 ..      36     160 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 2.5e-19
                 EEEEEEEE.EECC....TCCCCHHHHHHHHHHHHHHTTTEEEEEEEEEEEEC.....HHHHHHHHHHHHHHHTT-EEEEEEEEEESS......EEEEEE CS
        AIRS   6 vvttdshnrpvlv....epvhfiGakavavnlsDlaamGArPlalllslalp.....wleevvrglaeaaeelgvplvgGdtsfsne......ptisvt 89 
                 v ++d++++++l+    + ++++G+ +v ++++D+a+ GA+Pl++l+++ ++      l ++++g+++a++ ++++l+gG+t+++++      + ++ +
  CCG93012.1  57 VSSIDGVGTKLLIgqmaNRYDGLGEDLVNHCINDIATLGAEPLFFLDYIGCGklepsVLIKILEGMERACRNANCALLGGETAQMPGiykekdFDLVGA 155
                 6677888888888655567888*************************************************************9988888888889999 PP

                 EEEEE CS
        AIRS  90 avGlv 94 
                 +vG+v
  CCG93012.1 156 IVGVV 160
                 99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2310.02
//
Query:       CCG93013.1  [L=484]
Description: Amidophosphoribosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-23   82.5   0.0    3.3e-23   81.9   0.0    1.3  1  GATase_7      Glutamine amidotransferase domain
    7.5e-22   78.0   0.0    1.2e-21   77.3   0.0    1.3  1  GATase_6      Glutamine amidotransferase domain
      5e-06   26.1   0.0    8.8e-06   25.3   0.0    1.4  1  Pribosyltran  Phosphoribosyl transferase domain
    1.5e-05   24.1   0.0    2.5e-05   23.3   0.0    1.3  1  GATase_4      Glutamine amidotransferases class-II


Domain annotation for each model (and alignments):
>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   7.3e-27   3.3e-23      12     121 ..     102     216 ..      89     218 .. 0.93

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 7.3e-27
    GATase_7  12 gaQPmvs.sedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllallea.......ewgeealerlnGmfAfaiwdeeekrlllaRDrlGikPL 102
                 +aQP+v   ++g+l++++nG i+N  ++r+eLe+kg  f+t+sD+ev+l+l+++           +al+r++G f+ ++++++   +++aRD+lG++PL
  CCG93013.1 102 NAQPIVVsCSKGELALAHNGNIVNAVSIRRELENKGSIFQTTSDSEVILHLMAQpaqedtfSSFLNALQRVKGAFSCVLMTTKG--IFAARDPLGFRPL 198
                 78***9866899*****************************************9****999999999****************9..************* PP

    GATase_7 103 yygedkgdallfaSelkal 121
                  +g+ + ++++++Se  a+
  CCG93013.1 199 CLGKIE-NSYVVSSETCAF 216
                 *****6.7*******9987 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   2.7e-25   1.2e-21      10     134 .]      81     212 ..      69     212 .. 0.85

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 2.7e-25
    GATase_6  10 vedevalaHvRlaivglaeeegaqPf..psedgrlllvhNGeiynykelreelpalkglafrsrsDtevllalleelG........eevlerlrGmfaf 98 
                  ++++a++HvR +++g ++   aqP+  + ++g+l+l+hNG i n+ ++r+el++ kg  f+++sD+ev+l+l+++ +          +l+r++G+f+ 
  CCG93013.1  81 LQGTMAIGHVRYSTTGSSTLLNAQPIvvSCSKGELALAHNGNIVNAVSIRRELEN-KGSIFQTTSDSEVILHLMAQPAqedtfssfLNALQRVKGAFSC 178
                 35679*************77777***88889999*********************.****************9944444445667777778999*8888 PP

    GATase_6  99 aiwdkrentlilardrlgvkplyyavdesglafase 134
                 +++  ++++++ ard lg +pl+ +  e+  +++se
  CCG93013.1 179 VLM--TTKGIFAARDPLGFRPLCLGKIENSYVVSSE 212
                 766..5999*******************99999998 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0     2e-09   8.8e-06      80     124 ..     350     394 ..     280     406 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2e-09
                   EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEEEEEEE CS
  Pribosyltran  80 rlledpagkkVliVDDildtGgTllaalelLkekgpeevriavlv 124
                      e ++gk+V++VDD +  G+T +a +  L+e+g++ev+i v++
    CCG93013.1 350 LIQEAIRGKRVIVVDDSIVRGTTARARVVNLREAGAKEVHIRVSC 394
                   567889***********************************9988 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   5.6e-09   2.5e-05      69     139 ..      81     155 ..      68     189 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 5.6e-09
    GATase_4  69 iksknvvaHiRkatqGevklenthpFvRelwgrewifAHnGdlke...ykpklegrfePvGsT..DsElafCelle 139
                 ++ ++++ H+R  t+G+ +l n++p v +  + e  +AHnG++ +   ++ +le++   + +T  DsE+++  + +
  CCG93013.1  81 LQGTMAIGHVRYSTTGSSTLLNAQPIVVSCSKGELALAHNGNIVNavsIRRELENK-GSIFQTtsDSEVILHLMAQ 155
                 567889*************************************5533334444322.2332222388888755544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3164.87
//
Query:       CCG93014.1  [L=362]
Description: Cellulase M or related protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-13   48.6   0.0      2e-11   43.5   0.0    2.1  2  Peptidase_M42  M42 glutamyl aminopeptidase
    1.4e-07   31.5   0.0    2.5e-07   30.6   0.0    1.4  1  Peptidase_M20  Peptidase family M20/M25/M40
    5.3e-05   23.0   0.0     0.0037   17.0   0.0    2.1  2  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.1   0.0    0.0068        41      10      61 ..      57     103 ..      46     115 .. 0.77
   2 !   43.5   0.0   3.4e-15     2e-11     116     276 ..     140     300 ..     132     313 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0068
                    STTSSEEEEEEE--B-EEEEEEEETTSEEEEEEESS--GGGTTTEEEEEEET CS
  Peptidase_M42  10 kekepkvmiaAHmDeiGfmVkeIkedGflrfekvGGvdpkvlegqrvkiltk 61 
                     +++p ++++AHmD  Gf      +d + ++  +GGv+++ leg +  ++ +
     CCG93014.1  57 DKDQPILLFVAHMDHPGFY-----SDSQSHVYLLGGVNESYLEGAKLIFFSQ 103
                    467888999******9996.....5667778888888888888888777665 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 3.4e-15
                    ES---EEETTECEEETTHHHHHHHHHHHHHHHHHCTSS-SSEEEEEEESTCTTTSHHHHHHHHH..H--SEEEEEEEEEE-CSTTSTTTTSSTTS- CS
  Peptidase_M42 116 fdkefvelangkivskalDdragvavllellkelkeeeleatvylvatvqEEvGlrGaktsaek..ikpdiaiavDvtaagdtpgskekeaklgkG 209
                    +d ++ + ++g + ++  Dd +gv  ll+++ ++ +++l++++ l+++  EE+G  G  ++ ++  ++p+  i + + a+   +g+ +++    +G
     CCG93014.1 140 WDLPPFFSQDGIFYGRSCDDLVGVCSLLYMFIQIVSKNLKTKIALLFSRAEEIGFLGTLAFLKRqiLNPENTIMISIEAS-MAQGYGSMN----EG 230
                    5666777889999********************************************99887652268888887777666.345555555....8* PP

                    CEEEEEETTCCSHHHHHHHHHHHHHHT.....T--EEEEEESSSSSTHHHHHTSTTTSEEEEEEEEEBSTTS CS
  Peptidase_M42 210 pvirvkDasgiyhpklrkkllelAkkn.....nipyqlevlsgggtDAgaihltgegvptalisiptryiHs 276
                    pv+rv D++ +++  ++++l+++ +++     +  yq +++ gg+++++ ++    g ++a+++ ++++ H 
     CCG93014.1 231 PVLRVGDKTRLFDASVVSWLEKALEDYrkvhpEFVYQKKFMGGGTCETTPFIEF--GYRSAALCLAMDNYHN 300
                    ******************999998876333335789************999998..9999****99999998 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   4.2e-11   2.5e-07      15     165 ..     138     278 ..     130     328 .. 0.64

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 4.2e-11
                    GGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEEEEEEEESSSBTCHS CS
                    xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20  15 dgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdavfelhieepgileag 108
                      w+  pf ++  dG +yGr ++d+  gv ++l+ + ++  +++k+  +i llf  +EE+g  G+ a+l+ +     +++  + + ie  ++ +  
     CCG93014.1 138 GMWDLpPFFSQ--DGIFYGR-SCDDLVGVCSLLYMFIQIVSKNLKT--KIALLFSRAEEIGFLGTLAFLKrQ---ILNPENTIMISIE-ASMAQ-- 222
                    459999****9..9******.*********************9866..***********9999**9999943...3466666644444.55544.. PP

                    TETEEEEE.EEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSCEEEE.EES.SSBHTHHH CS
                    xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.xxxxxxxx RF
  Peptidase_M20 109 klaigvvk.vevelleggapvtlndsplvkalaeaaeelfgekveli.vsg.pggtdarf 165
                        g ++  e   l+ g  ++l d+ +v +l++a+e++ ++ +e++  ++ +gg  +  
     CCG93014.1 223 ----GYGSmNEGPVLRVGDKTRLFDASVVSWLEKALEDYRKVHPEFVyQKKfMGGGTCET 278
                    ....22221222222444555555577777777777775344455553333655554444 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.1    0.0054        32      11      27 ..      56      75 ..      46      89 .. 0.68
   2 !   17.0   0.0   6.3e-07    0.0037      37      99 ..     158     220 ..     141     309 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0054
                   E...SEEEEEEEE--B-TTT CS
  Peptidase_M28 11 t...devlllgAHyDsvgvg 27
                       +  ll+ AH+D+ g+ 
     CCG93014.1 56 DdkdQPILLFVAHMDHPGFY 75
                   22325599********9984 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 6.3e-07
                    TTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHHHHHC..CCTTEEEEEEECS CS
  Peptidase_M28  37 DnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafakakp..elkkiaavlnlDm 99 
                    D+ +gv +lL++  ++++  +++k ++ +lf  aEE g+lG  af k++   + ++i   ++  m
     CCG93014.1 158 DDLVGVCSLLYMFIQIVS--KNLKTKIALLFSRAEEIGFLGTLAFLKRQIlnPENTIMISIEASM 220
                    8889********999997..589***********************6444445555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2695.96
//
Query:       CCG93015.1  [L=357]
Description: 3-oxoacyl-(acyl-carrier-protein) synthase 3 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-35  121.0   0.2    6.1e-34  116.1   0.0    2.7  3  ACP_syn_III_C    3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    4.3e-30  103.4   1.0      8e-30  102.5   1.0    1.5  1  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
      2e-08   33.9   0.0    3.4e-08   33.2   0.0    1.3  1  Thiolase_N       Thiolase, N-terminal domain
    7.9e-05   21.5   0.1    0.00022   20.0   0.0    1.7  2  SpoVAD           Stage V sporulation protein AD (SpoVAD)
    0.00079   18.9   0.9     0.0035   16.8   0.6    2.1  2  Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal 
     0.0014   18.6   0.0      0.003   17.6   0.0    1.5  1  Chal_sti_synt_C  Chalcone and stilbene synthases, C-terminal 
  ------ inclusion threshold ------
      0.013   14.8   0.0       0.02   14.2   0.0    1.3  1  FAE1_CUT1_RppA   FAE1/Type III polyketide synthase-like prote
       0.12   12.0   1.0       0.75    9.3   0.5    2.5  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.11   2.4e+02       1      16 [.      77      92 ..      44      99 .. 0.86
   2 ?   -2.7   0.1       3.1     7e+03      70      85 ..     166     181 ..     162     182 .. 0.78
   3 !  116.1   0.0   2.7e-37   6.1e-34       1      90 []     250     339 ..     250     339 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.11
                   HHHTT--GGG-SEEEE CS
  ACP_syn_III_C  1 Lekagltpedidalvp 16
                   L++agltped+d+++ 
     CCG93015.1 77 LQNAGLTPEDLDLIIV 92
                   6788999999998875 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.1
                    -EEEEEEEETTTEEEE CS
  ACP_syn_III_C  70 dlvllvgfGaGltwga 85 
                    ++++l+g GaG  + a
     CCG93015.1 166 NTCVLFGDGAGAAIIA 181
                    5789999999987765 PP

  == domain 3  score: 116.1 bits;  conditional E-value: 2.7e-37
                    HHHTT--GGG-SEEEE-SSSHHHHHHHHHHHT--GGGB--THHHH-B-GGGHHHHHHHHHHHTTSS-TT-EEEEEEEETTTEEEEEEEE- CS
  ACP_syn_III_C   1 LekagltpedidalvphqanlriidavakklglpeekvvvnldeyGntsaasiplaLdeaveegklkpgdlvllvgfGaGltwgaallrw 90 
                    L++ag + edi +++phqanlrii+a+ ++l++p ek++vn+++yGnts+a ip+aL+ea+ ++++k+gd ++lv+fGaG+twg++l+++
     CCG93015.1 250 LKNAGRSLEDIACIIPHQANLRIIEALSQRLHIPSEKFFVNMEKYGNTSSACIPIALHEAIISNRIKDGDIIVLVSFGAGITWGSVLFEY 339
                    678999********************************************************************************9975 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   1.0   3.6e-33     8e-30       1      80 []     120     198 ..     120     198 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 3.6e-33
                  EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGCS-TTTHHHHTTB-EEEEEEEEEEESSSSCEEEEEEEEE-G CS
  ACP_syn_III   1 fDlnaaCsgfvyalsvAdaliesgaakrvLvigaetlskilDwkdrstavlfGDGAgAvvleaseeegarildselgsdg 80 
                  fD++aaCsgf+ya  +A++++++g+a+++Lv+gae+ls i+Dw+dr+t+vlfGDGAgA+++ a+++++ + l++++g+dg
   CCG93015.1 120 FDIQAACSGFIYAFVLASHIVSTGSARYILVVGAEKLSTIIDWTDRNTCVLFGDGAGAAIIAAGKDKN-KRLSFNIGADG 198
                  9**************************************************************97666.69******998 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.5e-11   3.4e-08       7     118 ..      49     159 ..      47     183 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.5e-11
                 EEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHS CS
  Thiolase_N   7 artpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaagead 105
                  rt i + + + ++ + +e++aea+  +l++ag++pe++d +iv++          a  ++ k+g  +++pa  ++ +cs  + a +la   + +g+a 
  CCG93015.1  49 ERTGIKERRIANEKETPSEMGAEAALIALQNAGLTPEDLDLIIVATTTPDTIFPSTACYIQQKIGA-RTIPAFDIQAACSGFIYAFVLASHIVSTGSAR 146
                 689999999999999*****************************9999888877888888889998.9******************************* PP

                 EEEEEEEEESTTS CS
  Thiolase_N 106 vvvagGvEsmsna 118
                  ++++G+E++s+ 
  CCG93015.1 147 YILVVGAEKLSTI 159
                 **********985 PP

>> SpoVAD  Stage V sporulation protein AD (SpoVAD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     1e-07   0.00022      51     133 ..      65     153 ..      45     160 .. 0.81
   2 ?   -2.2   0.0      0.57   1.3e+03      42      77 ..     230     264 ..     223     325 .. 0.59

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1e-07
                 HHHHHHHHHHHHHHHTT--GGG-SEEEEEESSGGGH...HHHHHHHHH...---EEEB--GGGHHHHHHHHHHHHHHTTS-SEEEEEEE CS
      SpoVAD  51 esklleeavkkalkkanlkkedidfllaGDLlnqli...sssfaarel...kiPflglygaCstsaeslalaallvdggfakrvlaats 133
                  s++  ea+  al++a+l+ ed+d+++       +i   ++ +  +++   +iP + + +aCs +  +++la+ +v++g a+++l++ +
  CCG93015.1  65 PSEMGAEAALIALQNAGLTPEDLDLIIVATTTPDTIfpsTACYIQQKIgarTIPAFDIQAACSGFIYAFVLASHIVSTGSARYILVVGA 153
                 4789999*****************99877666666522233454555422269*******************************98765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.57
                 TT-SSHHHHHHHHHHHHHHHHHHHTT--GGG-SEEE CS
      SpoVAD  42 lgeksfekaesklleeavkkalkkanlkkedidfll 77 
                 +g+k f  a  ++ e+++  +lk+a+ + edi  ++
  CCG93015.1 230 VGKKVFKLAIDSM-EQSLLRCLKNAGRSLEDIACII 264
                 5666666665554.4555566666666666665554 PP

>> Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.6   1.6e-06    0.0035      88     224 ..      53     183 ..      28     184 .. 0.76
   2 ?   -1.2   0.0      0.49   1.1e+03      94     125 ..     229     264 ..     220     269 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.6e-06
  Chal_sti_synt_N  88 ldarleiv.naevlklgkeaalkalkewGrPkskithl.vfvsssevelPGadlklakklGlrpsvkrvmlyflGcygGatvlrlakdiaennk 179
                      +++r+    ++   ++g+eaal al++ G   +++  + v  ++ +  +P +  ++ +k+G r+        +  c+g   ++ la  i    +
       CCG93015.1  53 IKERRIANeKETPSEMGAEAALIALQNAGLTPEDLDLIiVATTTPDTIFPSTACYIQQKIGARTI-P-AFDIQAACSGFIYAFVLASHIVSTGS 144
                      444443330344569**************99999987615566779999************8864.3.4456899****************999 PP

  Chal_sti_synt_N 180 Garvlvvasei..tvlgfrgPskdrlddlvGaalfGdGaaaviiGad 224
                         +lvv +e   t++ +               lfGdGa a+ii a+
       CCG93015.1 145 ARYILVVGAEKlsTIIDWTD--------RNTCVLFGDGAGAAIIAAG 183
                      999*****996225554432........234579**********985 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.49
  Chal_sti_synt_N  94 ivnaevlklgkeaa....lkalkewGrPkskithlv 125
                      +v ++v kl+ ++     l++lk+ Gr  ++i+ ++
       CCG93015.1 229 MVGKKVFKLAIDSMeqslLRCLKNAGRSLEDIACII 264
                      6666777777655411115799*******9998765 PP

>> Chal_sti_synt_C  Chalcone and stilbene synthases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.3e-06     0.003      30     147 ..     230     337 ..     207     340 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.3e-06
  Chal_sti_synt_C  30 llrdlPekieenieeflkklleklGieefndlfwiv.hPGGpaildrleaklklekekleasrkvlseyGnvssatvlyvldelrdkelkkkla 122
                      +++ + ++  + +e+ l + l+++G + ++d+  i+ h     i+++l ++l++  ek+ +    + +yGn ssa++   l+e       ++ +
       CCG93015.1 230 VGKKVFKLAIDSMEQSLLRCLKNAGRS-LEDIACIIpHQANLRIIEALSQRLHIPSEKFFVN---MEKYGNTSSACIPIALHEAII---SNRIK 316
                      567777788899999999999999986.666655543999999***************9876...679*********988866443...33333 PP

  Chal_sti_synt_C 123 ttgegkewGlllafGPGltietlll 147
                            ++ +l++fG G+t  ++l+
       CCG93015.1 317 DG----DIIVLVSFGAGITWGSVLF 337
                      33....7889*********988875 PP

>> FAE1_CUT1_RppA  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   9.1e-06      0.02      94     208 ..      76     185 ..      20     195 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.1e-06
  FAE1_CUT1_RppA  94 llaktkvspkdidilvvncslf.sptPslsamvvnryklredvksynLsgmGCsAglisidlaknllqvhkntlalvvstEnitlnwYvGnersm 187
                      l++++++p+d+d+++v++++  +  Ps +  + ++ + r+ + ++++ +  Cs  + +  la++++ +    + lvv  E++++ +   + r+ 
      CCG93015.1  76 ALQNAGLTPEDLDLIIVATTTPdTIFPSTACYIQQKIGART-IPAFDIQA-ACSGFIYAFVLASHIVSTGSARYILVVGAEKLSTIIDWTD-RN- 166
                     47899***********9988761457**********99985.******98.8*******************************98765543.43. PP

  FAE1_CUT1_RppA 188 llanclFRvGgaavllsnksa 208
                       +  lF  G+ a++++  ++
      CCG93015.1 167 --TCVLFGDGAGAAIIAAGKD 185
                     ..2346777766655555444 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.5   0.00033      0.75     101     209 ..      49     160 ..      37     171 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00033
                    HHHTS-HHTCTTGG.EEEEEEESST....HHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--S.SEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt 101 edagltpeeldgsr.vgvfiGvgag....dyaalaaldedgsevkaspkavgavlanviagrisyalglrG.psvtvdtACsSslvavhaavqslr 190
                    e+ g++++++ +++ +   +G++a+    +  +  +  ed +   +   +++ ++   +a+ i ++ g+r  p++ +++ACs    a  +a + + 
     CCG93015.1  49 ERTGIKERRIANEKeTPSEMGAEAAlialQ--NAGLTPEDLD-LIIVATTTPDTIFPSTACYIQQKIGARTiPAFDIQAACSGFIYAFVLASHIVS 141
                    667777777744444666666666644212..2223333332.22222455666777788899999999876999******999*******99999 PP

                    TTS-SEEEEEEEE---SHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpe 209
                    +g a ++l+ G+e l t  
     CCG93015.1 142 TGSARYILVVGAEKLSTII 160
                    9***********9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2507.90
//
Query:       CCG93016.1  [L=347]
Description: Phosphate acyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     4e-107  358.0   0.1   4.5e-107  357.8   0.1    1.0  1  FA_synthesis  Fatty acid synthesis protein
    3.3e-05   23.4   0.0    5.8e-05   22.6   0.0    1.4  1  PTA_PTB       Phosphate acetyl/butaryl transferase
  ------ inclusion threshold ------
      0.054   13.9   0.0       0.13   12.6   0.0    1.6  1  DUF3842       Domain of unknown function (DUF3842)


Domain annotation for each model (and alignments):
>> FA_synthesis  Fatty acid synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.8   0.1  7.6e-111  4.5e-107       1     321 [.       1     322 [.       1     324 [. 0.98

  Alignments for each domain:
  == domain 1  score: 357.8 bits;  conditional E-value: 7.6e-111
                   XEEEEESS-STTTTHHHHHHHHHHHHH-TTEEEEEEE-HHHHHTT--S....--TT.EEEEE--B---TTS-HHHHHHH-TTBHHHHHHHHHHTTS- CS
  FA_synthesis   1 vkiavdamGgdhgpeevvkgvelaakeaddleivlvGdkeeiepllkk..eeeakskleivhaedviemeekpvaavrkkkdssmavalelvkegea 95 
                   +kia+damGgd++p   ++g++ a++ + d++++lvG++  i+++  k   +  ++++e +h+++v+ me++p + vr+k+dss+ + +el k+gea
    CCG93016.1   1 MKIALDAMGGDYAPDSPISGAIEALNLFPDIHLILVGNEPIIKEIFYKknGHDVQQRVEFLHTSQVVGMEDPPIESVRHKRDSSISRCIELAKKGEA 97 
                   89*******************************************999664466789**************************************** PP

                   SEEEE-S-HHHHHHHHHHCT-B-TT-SS-EEE-EE--TTS-EEEE-SSS-TT--HHHHHHHHHHHHHHHHHTS--SS-EEEEEESSSSTT-SSHHHH CS
  FA_synthesis  96 dalvsaGntgAlmalallrlgrikgierpalavllPtvsgktvlLDvganvdckpkeLvqfalmGsvyaesvlgvdsprvglLniGeeevkgndlvk 192
                   da+vsaGntgA++a+a++ l+ ++gi r  +a ++Pt +  ++l+D ga +d  p++L++f++mGs ya+++lgv +prvglL+iG+e+vkgn+l++
    CCG93016.1  98 DAVVSAGNTGAVVAAATVYLRTLPGISRAGIASVIPTEKNPFILIDSGAIIDSTPENLLDFGIMGSIYAKKILGVSNPRVGLLSIGTENVKGNELTR 194
                   ************************************************************************************************* PP

                   HHHHHHHT-TTSEEEEEEEGGGCCCTS-SEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHTTT----------HHCHHHHHHHH-GGGC--EEEETB CS
  FA_synthesis 193 qtfellkaiesieflGnvegrdildgkvdvivcdgftgNvilktaegvakavksllkeelkkslasklgalllskalkrlkkkldykeyggavllGl 289
                    +f+ll + ++++f+Gn+egrd++++ vdv+vcdgf+gNv+lkt+e+va av++ lk e+kk+    lga l+++a++ +kkk++y+eygga+llG+
    CCG93016.1 195 SAFKLLSK-SNLNFVGNIEGRDLFENPVDVVVCDGFVGNVVLKTSESVATAVVRWLKREFKKNPIRILGAFLAKGAFESVKKKTNYEEYGGALLLGI 290
                   *******9.7*************************************************************************************** PP

                   SS-EEE--TT--HHHHHHHHHHHHHHHHTTHH CS
  FA_synthesis 290 kgvvikshgkankkaikaaIrqakelvetqvi 321
                   +g++i++hg++  kai +aIr+a+e++ ++v+
    CCG93016.1 291 RGTCIIAHGSSTPKAICNAIRVAREALIQNVN 322
                   **************************999986 PP

>> PTA_PTB  Phosphate acetyl/butaryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   9.8e-09   5.8e-05      94     222 ..      74     198 ..      27     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 9.8e-09
                 HCCHHHHTTSHHHHHHHHHHTTSSSEEEE-TTS-HHHHHHHHHHCT-B-TT----EEEEEEEETTEEEEEESSSS-SS--HHHHHHHHHHHHHHHHHC. CS
     PTA_PTB  94 ieearevvrdatyfaamlvklgeaDglvsGavnttadtlrpalqiiktkpgvklvSsvfimlledrlllfaDcavnvnPtaeelaeialesaktakal. 191
                 ie++r++    +   ++l k+geaD++vs  + +t  ++ +a   + t+pg++ +   +++ +e++ +++ D+   ++ t e+l +  ++    ak++ 
  CCG93016.1  74 IESVRHKRDSSISRCIELAKKGEADAVVS--AGNTGAVVAAATVYLRTLPGISRAGIASVIPTEKNPFILIDSGAIIDSTPENLLDFGIMGSIYAKKIl 170
                 6778888888899999************8..7889999*****************999999999***********************999888888762 PP

                 CSS--EEEEE-SSSTTSS-SHHHHHHHHHHH CS
     PTA_PTB 192 geeeprvAlLSyStkgsakgesvekvrealk 222
                 g  +prv lLS  t + +  e +    +a k
  CCG93016.1 171 GVSNPRVGLLSIGTENVKGNELTR---SAFK 198
                 679********9997766655554...4444 PP

>> DUF3842  Domain of unknown function (DUF3842)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.2e-05      0.13      10      96 ..     159     245 ..     156     264 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
     DUF3842  10 ggiGkelveklkkelpeeveilalGtNalatsamlkaganegatGenavvvnvkkadiivgpigiviansllGEitpamaeavaese 96 
                 g +G+   +k+    + +v +l++Gt ++  +++ ++  +     +   v n++  d+   p+ +v++++++G +  + +e+va++ 
  CCG93016.1 159 GIMGSIYAKKILGVSNPRVGLLSIGTENVKGNELTRSAFKLLSKSNLNFVGNIEGRDLFENPVDVVVCDGFVGNVVLKTSESVATAV 245
                 6788999999999999999******************999999999999***************************99999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2248.44
//
Query:       CCG93017.1  [L=150]
Description: Predicted metal-binding, possibly nucleic acid-binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-08   32.8   0.1     0.0016   18.6   0.0    2.4  2  YceD      Large ribosomal RNA subunit accumulation protein Yc


Domain annotation for each model (and alignments):
>> YceD  Large ribosomal RNA subunit accumulation protein YceD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   7.9e-06      0.14       2      28 ..      53      79 ..      52      87 .. 0.86
   2 !   18.6   0.0   8.7e-08    0.0016      60     101 ..      91     128 ..      82     147 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.9e-06
        YceD  2 dgrvsatvtleCdrClepvelpldvef 28
                +g++++ v  +C rC + +e+p++++ 
  CCG93017.1 53 NGNLKTSVLIQCGRCCKWFEYPIEISN 79
                899********************9864 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 8.7e-08
        YceD  60 eiDlselireelllalPlkplckpdckgeklcsqcganlnee 101
                  iDls  ire +llalP+  +c p+      c +  ++l e+
  CCG93017.1  91 VIDLSNRIREDILLALPMIGFCGPEVAN--GCFG--KELFED 128
                 7*********************987766..4443..333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1198.19
//
Query:       CCG93018.1  [L=166]
Description: Transcriptional repressor NrdR [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-13   50.6   0.1    3.8e-13   49.8   0.1    1.4  1  ATP-cone    ATP cone domain
  ------ inclusion threshold ------
        8.2    6.3   6.0        5.4    6.9   0.9    2.3  2  zf-C2H2_11  zinc-finger C2H2-type


Domain annotation for each model (and alignments):
>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.1   4.3e-17   3.8e-13       2      85 ..      50     136 ..      49     137 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 4.3e-17
                 EEE-TTS-EEE--HHHHHHHHHHHHHH...-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHH CS
    ATP-cone   2 kViKRdGtvepfdvekIkraiekAceg...seeeideiaeeveaevrkrlrdgisteeIqdlvektliehpdyavaaayilyrnlrk 85 
                  V+KR+G +epfd++k+   i+kA+e+   ++++i+++++++++e   ++ + i++  I++ v+++l++ +++a+++++++y ++++
  CCG93018.1  50 LVKKRNGLIEPFDRNKLMLGIQKALEKrpiDQAQIEDFVDQIIEECSTEKSSIIPSYLIGTKVMNKLKTIDEVAFIRFASVYCKFHD 136
                 59********************************************************************************99997 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.4     0.024   2.1e+02       6      11 ..       2       7 ..       1       8 [. 0.88
   2 ?    6.9   0.9   0.00061       5.4       7      15 ..      31      39 ..      29      41 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.024
  zf-C2H2_11  6 qCleCG 11
                +C++CG
  CCG93018.1  2 KCMKCG 7 
                8****9 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00061
  zf-C2H2_11  7 CleCGlcft 15
                Cl+CG  ft
  CCG93018.1 31 CLQCGFRFT 39
                ********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1031  (0.0575046); expected 358.6 (0.02)
Passed bias filter:                      736  (0.0410508); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1155.54
//
Query:       CCG93019.1  [L=117]
Description: HIT family hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-26   91.9   0.0    3.6e-26   91.8   0.0    1.0  1  HIT       HIT domain
    3.5e-20   72.6   0.0    4.7e-20   72.2   0.0    1.0  1  DcpS_C    Scavenger mRNA decapping enzyme C-term binding
  ------ inclusion threshold ------
      0.036   13.6   0.0      0.066   12.7   0.0    1.4  2  LRR_9     Leucine-rich repeat


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0     6e-30   3.6e-26       2      96 ..      11     106 ..      10     108 .. 0.94

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 6e-30
                 GCC-CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCC...HHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEEEEC- CS
         HIT   2 keipstvvyeddlvlafldidpkapghlLvipkkhlselhdlt...eeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHviprr 96 
                 ++ip++++yed +++af+di p a++h+L++p+k++++l +++      l++ll +++kva++l+  f+ +g+rv+inng++ag s++hlH+H+i+++
  CCG93019.1  11 RKIPADILYEDSQCVAFRDIHPVARVHVLIVPRKEIPRLGEASeedIPLLGHLLLTANKVATQLGI-FH-SGFRVIINNGPDAGESIPHLHVHLIGGE 106
                 679****************************************6666679***************9.66.9************************986 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0   7.8e-24   4.7e-20       3     101 ..       4     104 ..       3     109 .. 0.88

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 7.8e-24
                 HHHHHHTTSS-B-EEEE-SSEEEEE-SS-SSSEEEEEEESS---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T-EEEEE--SCCCT-....-S-S--E CS
      DcpS_C   3 vfnilakgkepervvyedekfvvlkDikpkaklhllvipkrdikslrdLtkehlpllkemrekakkvieekynevdaeelrvgvhyqP....svyhlHl 97 
                 +f +++++k+p++++yed+++v+++Di p a++h+l++p+++i+ l + ++e++pll ++  +a+kv+ +    +  + +rv ++  P    s+ hlH+
  CCG93019.1   4 LFSQIISRKIPADILYEDSQCVAFRDIHPVARVHVLIVPRKEIPRLGEASEEDIPLLGHLLLTANKVATQLG--IFHSGFRVIINNGPdageSIPHLHV 100
                 58899***************************************************************9976..455555555555555555******* PP

                 EEEE CS
      DcpS_C  98 Hvis 101
                 H+i 
  CCG93019.1 101 HLIG 104
                 *996 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.1e-05     0.066      59     101 ..      29      71 ..      16      79 .. 0.84
   2 ?   -2.7   0.0      0.61   3.6e+03      76      92 ..      84     100 ..      81     106 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.1e-05
       LRR_9  59 gfPllkrlktlllnnnrivriaegleevlPnleelvltnnelq 101
                 ++  + r+++l++    i r++e  ee +P l +l+lt n++ 
  CCG93019.1  29 DIHPVARVHVLIVPRKEIPRLGEASEEDIPLLGHLLLTANKVA 71 
                 5555789*********************************975 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.61
       LRR_9  76 ivriaegleevlPnlee 92 
                 i++ +++ +e++P+l+ 
  CCG93019.1  84 IINNGPDAGESIPHLHV 100
                 56667889999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       185  (0.0103185); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 807.22
//
Query:       CCG93020.1  [L=265]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1824.36
//
Query:       CCG93021.1  [L=400]
Description: Cysteine sulfinate desulfinase/cysteine desulfurase or related enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-43  148.1   0.0    5.6e-43  147.3   0.0    1.3  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
       0.16   11.2   0.0       0.26   10.5   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.3   0.0   6.3e-47   5.6e-43       1     371 []       9     372 ..       9     372 .. 0.91

  Alignments for each domain:
  == domain 1  score: 147.3 bits;  conditional E-value: 6.3e-47
                  EEEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC.-TTTSEEEEETTS CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslars.lkpgdeivvteae 97 
                  i+ld +  +++++e+l+   +y+ +  +    s+h+lg + +k +e a e +  +i+ +  +e++ft G  eai l + ++ r+   +g++i+++ +e
   CCG93021.1   9 IFLDHQSVSPVFKEALELFYHYSLEPFSPL--SIHQLGIQSKKTLESALESFSSFIGCSP-DELVFTGGIWEAIILGIEGFWRKnSLRGKHILTSPIE 103
                  577777778888877777777766666665..***************************7.********************999999*********** PP

                  HGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEE CS
  Aminotran_5  98 hhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDfl 195
                   +  l+   +l+ r+ga+++ +p+d+eg +d++++e+l +++t l ++++v+ ++Gtiq ++e ++++ kk + +++D++ a g ipid+kk+ + +l
   CCG93021.1 104 QKPILLLLDKLK-REGAQLTLLPVDKEGMVDPKAIEELSTPQTILCCLQWVNPEIGTIQKIKEAAEICEKKSIAFFCDGSYAGGWIPIDLKKIPISLL 200
                  ***********7.99*********************************************************************************** PP

                  EEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCT CS
  Aminotran_5 196 afsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlks 293
                  a+    ++gP+GiGvly+r+    ++ep+ +g +       +e +       + +GT+n+a+i++ ++a+e+  +i  e+iek     ++ + er+++
   CCG93021.1 201 AINPNQFNGPKGIGVLYIRQ--GIEIEPIIPGLN-------KELG-------LWGGTENMASIVAAAKAAEITTKIFKEKIEKIGY-FQKLIWERISA 281
                  ********************..999******999.......6666.......668*********************9999998765.55666667765 PP

                  .STTEEEES.-B-CTCBSEEEEEE..TTCSHHHHHHHHHHTTEEEEEE-TTT....HHHHHHTT.S.......-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 294 .lpgvrlygpdkaerrasivsfnf..kgvhaedvatlLdeegIavrsGhhca....qplmkrlale.......gtvRaSlyiynteeevdrl 371
                   +p v l+gp +   ++si ++n+  + +  e  +  +d +g+ ++sG +c+    ++++++ a+        ++vR+Sl+i +t+ee++r+
   CCG93021.1 282 sIPMVSLNGP-QLGPNRSIQNLNIspEFIGGEAQVLSCDMKGVLLSSGPSCVqknlRISHVFKAVGleyqkamSSVRISLGITTTKEEIERF 372
                  49*****996.889999999999865677889999999999***********777766666666668899999*****************97 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.9e-05      0.26      94     168 ..     117     181 ..     113     183 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.9e-05
                      C--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEE CS
  Beta_elim_lyase  94 agvklrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDg 168
                      +g++l+ l+ +++G +d++++e++ ++      ++ l +l   n     ++ ++++++e+a+i++k+ i +++Dg
       CCG93021.1 117 EGAQLTLLPVDKEGMVDPKAIEELSTP------QTILCCLQWVNP----EIGTIQKIKEAAEICEKKSIAFFCDG 181
                      689999999999999999999998888......355777776666....577899*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3189.10
//
Query:       CCG93022.1  [L=255]
Description: Membrane-associated phospholipid phosphatase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-17   63.8   6.1    1.3e-17   63.8   6.1    2.2  2  PAP2             PAP2 superfamily
    7.4e-09   35.6   2.9    1.3e-08   34.7   2.9    1.4  1  PAP2_3           PAP2 superfamily
  ------ inclusion threshold ------
      0.015   15.9   0.2      0.015   15.9   0.2    2.2  3  PAP2_C           PAP2 superfamily C-terminal
      0.041   14.3   0.6        6.5    7.3   0.0    2.4  2  Phage_holin_3_1  Phage holin family (Lysis protein S)


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       1.9   8.6e+03      96      96 ..      40      40 ..      17      56 .. 0.54
   2 !   63.8   6.1   2.9e-21   1.3e-17       6     127 ..     108     238 ..     103     245 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.9
        PAP2 96 v 96
                +
  CCG93022.1 40 L 40
                1 PP

  == domain 2  score: 63.8 bits;  conditional E-value: 2.9e-21
        PAP2   6 llalalaalltsvlKdlvgrpRPfflaeetkldt.qvstletses...................keakesfPSgHsafafalalllalllrrkrkkigl 84 
                  ++ ++a++l+ +  +++gr RP++ a+e +      +      s                    + +++fPSgH+a+++a a+ +   ++++ ++   
  CCG93022.1 108 FFSALIAGALVDLGRNILGRARPSASATEAIKELgYIPLPIV--SfkrihpngslvdgfygiqwLTMFHGFPSGHAATSMATAASFLGQMPKLGYF--- 201
                 57778888888888*********9988775544403333333..2357889999****************************99999999999999... PP

        PAP2  85 vllalillllavlvalsRlylgvHflsDvlaGlliGialaala 127
                       l++la+lv++sR++lg+H++sDv+aG l+G++l++++
  CCG93022.1 202 ------LVFLAFLVCWSRMALGRHYFSDVMAGGLVGFLLGFIF 238
                 ......*********************************9976 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   2.9   2.9e-12   1.3e-08     126     186 ..     175     233 ..     149     237 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.9e-12
      PAP2_3 126 afPSlHvawallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvalalv 186
                  fPS H+a ++ +a+ +    +k   ++++++l++l+ ++ +a+g HY+ Dv+aG +++++
  CCG93022.1 175 GFPSGHAATSMATAASFLGQMPKL--GYFLVFLAFLVCWSRMALGRHYFSDVMAGGLVGFL 233
                 4*************9966666666..999999***********************999876 PP

>> PAP2_C  PAP2 superfamily C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.6   7.3e+03      37      43 ..      38      44 ..      16      58 .. 0.57
   2 ?   -1.5   0.0      0.82   3.7e+03      37      67 ..      82     112 ..      63     117 .. 0.69
   3 ?   15.9   0.2   3.2e-06     0.015       8      68 ..     178     234 ..     176     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.6
      PAP2_C 37 lllallg 43
                ++l+++ 
  CCG93022.1 38 WFLSVIL 44
                3333333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.82
      PAP2_C  37 lllallglfliiasrkHYtvDVllglyittl 67 
                 + l+++++fl i+ +k     V +g++++ l
  CCG93022.1  82 VPLCVSIYFLGILFKKEKLKEVAIGCFFSAL 112
                 5567777777776666666666666666655 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 3.2e-06
      PAP2_C   8 SGHtvvltlavlfileyspkklailkvillllallglfliiasrkHYtvDVllglyittlv 68 
                 SGH+++ + ++  +l  +pk      ++l++la+l + + +a   HY  DV+ g ++ +l+
  CCG93022.1 178 SGHAATSMATAASFLGQMPKL----GYFLVFLAFLVCWSRMALGRHYFSDVMAGGLVGFLL 234
                 999999888888888888877....69***************************9998876 PP

>> Phage_holin_3_1  Phage holin family (Lysis protein S)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0014       6.5      25      62 ..      83     120 ..      63     141 .. 0.85
   2 ?    5.1   0.2    0.0069        31      21      58 ..     200     237 ..     180     249 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0014
  Phage_holin_3_1  25 vlAlviallrviYdgkswkkvlleallCgllalavrsl 62 
                       l + i +l ++++++++k+v++ ++ ++l+a a+++l
       CCG93022.1  83 PLCVSIYFLGILFKKEKLKEVAIGCFFSALIAGALVDL 120
                      566778899999********************999875 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0069
  Phage_holin_3_1  21 iiaavlAlviallrviYdgkswkkvlleallCgllala 58 
                         + lA+++++ r++ +++ ++ v++ +l+  ll++ 
       CCG93022.1 200 YFLVFLAFLVCWSRMALGRHYFSDVMAGGLVGFLLGFI 237
                      445679**************999999998887666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1872.12
//
Query:       CCG93023.1  [L=400]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-26   91.9   0.0    5.6e-26   91.1   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    4.7e-21   75.6   0.0      1e-20   74.5   0.0    1.5  1  Glyco_trans_1_4  Glycosyl transferases group 1
    8.3e-11   42.2   0.0    1.5e-10   41.3   0.0    1.5  1  Glyco_transf_4   Glycosyltransferase Family 4
    0.00012   22.5   0.0     0.0002   21.8   0.0    1.3  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    0.00014   22.2   0.0    0.00029   21.2   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.0   1.6e-29   5.6e-26       7     155 ..     202     349 ..     197     373 .. 0.93

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 1.6e-29
                      HHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCC.HCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCH.SSSHHHHHHCESEEEE CS
  Glycos_transf_1   7 kklgknekkkiilsvgrlekeKgvdllikafallkkq.lnpnvklviaGngeeekelkklaeelelsdnviflgevs.redleellknadifvl 98 
                       kl+++++  ++l+vgrl keK++ ll+k f  l++  ++++++l+i+G+g+ ++e+ k     + s+++ ++ +v+ +++l  ++++ad+f++
       CCG93023.1 202 LKLEIPKDAFLLLYVGRLAKEKNIGLLLKTFFFLQDYsSKKDYWLLIIGDGPLRNEILKA---IKASNRICWIPRVDsKKELADYYRSADLFIH 292
                      588999**************************9987799***********9998877666...566889************************* PP

                      EESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHH CS
  Glycos_transf_1  99 psisEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairkl 155
                      p i E fG+v +E+ a+g+pv+      + ++v +g + ++ + ++  +laea++k+
       CCG93023.1 293 PGIVETFGLVTIESQACGCPVVGFRGTHMEDLVGEGFNEYWADRKDFRSLAEAVEKM 349
                      ******************************************************997 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   2.8e-24     1e-20       3     131 ..     212     349 ..     210     351 .. 0.88

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 2.8e-24
                      EEEEES---GG.GTHHHHHHHHHHHH.....HHEEEEEES---...HHHHHHHTT-T.TEEEE---...THHHHHHHH-SEEEE--..---SHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllr....kkdvrlvivGdgp.rpeeleelaagleerveftGfv...edlaellaaadvfvaPs..egfglk 86 
                       +l+vGrl +++k++ lll+ +  l+    kkd+ l+i+Gdgp r+ e+ + ++  ++r+ +  +v   ++la+++++ad+f+ P   e+fgl+
       CCG93023.1 212 LLLYVGRL-AKEKNIGLLLKTFFFLQdyssKKDYWLLIIGDGPlRN-EILKAIK-ASNRICWIPRVdskKELADYYRSADLFIHPGivETFGLV 302
                      69******.566**********9999666444699********776.5554564.4689*******88667*********************** PP

                      HHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHH CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvggiaevv..gengllvppgdpealaeailrL 131
                      ++E+ a+g+pvV ++   ++++v  g n + ++ +d  +laea++++
       CCG93023.1 303 TIESQACGCPVVGFRGTHMEDLVgeGFNEYWADRKDFRSLAEAVEKM 349
                      ***************9899****888999**************9875 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   4.2e-14   1.5e-10      41     164 ..      55     184 ..      15     190 .. 0.74

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 4.2e-14
  Glyco_transf_4  41 vrvprv.plpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrlgiplVltvHglye....krllkarlkplsrllralerrl 130
                     + +  + pl +     r+l +l  + +ll++ k D++ a +p+   + + + +++l++p+V ++H++++    +++ ++++++l+++++ + r+ 
      CCG93023.1  55 HVFSIKsPLINQFSQHRILLNLTEVINLLHEIKADIIEAGDPYQSSWLVSWTAKKLKVPVVGYYHSHFPdayvRTYFGWKNSFLEKAFFTFSRWY 149
                     333333033445556678889999*******************999999999999******************8888888888888888888888 PP

  Glyco_transf_4 131 ....lrradrviavSeatadelrerygvppekitVipn 164
                         +++ d +++++ ++ + lr+ +g+++   + +  
      CCG93023.1 150 aeeiYNQFDFTFVPTLSLLNLLRS-WGIKN--GVHLSL 184
                     8889********************.**985..334555 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   5.7e-08    0.0002      68     150 ..      82     177 ..      40     181 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 5.7e-08
  Glyco_trans_4_4  68 rqrrerpdvvhahspt..aglaarlarrrrgiplvvtlh....glllrrgsgavrrly........ralerrllrradavlvvseaeaeelral 147
                        ++ + d+++a +p+  ++l+ + a+ + ++p+v  +h    ++ +r + g++ +++        r+    +++++d  +v++ ++  +lr +
       CCG93023.1  82 LLHEIKADIIEAGDPYqsSWLVSWTAK-KLKVPVVGYYHshfpDAYVRTYFGWKNSFLekafftfsRWYAEEIYNQFDFTFVPTLSLLNLLRSW 174
                      3488899*******6557899999999.9**********444434455557776665555556888999************************* PP

  Glyco_trans_4_4 148 gvp 150
                      g+ 
       CCG93023.1 175 GIK 177
                      986 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     8e-08   0.00029       4      90 ..     292     378 ..     263     379 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 8e-08
  Glyco_trans_1_2   4 npsrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhraeql 90 
                      +p   e++ l++ E  acG++++  + + +e+l+ +g    +++  d  +lae+++++     + + i+++    v++++++++ +e+l
       CCG93023.1 292 HPGIVETFGLVTIESQACGCPVVGFRGTHMEDLVGEGFNEYWADrkDFRSLAEAVEKM--RTLDLKTIGKNLALNVHQKYSWRRSFEKL 378
                      455568999****************99**********999999889888888888887..5677899*****************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3033.64
//
Query:       CCG93024.1  [L=477]
Description: glutamine synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.4e-137  456.4   0.0   6.2e-137  456.2   0.0    1.0  1  Gln-synt_C  Glutamine synthetase, catalytic domain
    4.5e-29  100.0   0.0    1.4e-28   98.5   0.0    1.8  2  Gln-synt_N  Glutamine synthetase, beta-Grasp domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  456.2   0.0    7e-141  6.2e-137       2     345 .]     111     474 ..     110     474 .. 0.98

  Alignments for each domain:
  == domain 1  score: 456.2 bits;  conditional E-value: 7e-141
                 T-HHHHHHHHHHHHHHTTC..EEEEEEEEEEEEESEECCCE.SSEEEEEEE.T.............B...B.TSS-TTBHCCCCCTCCHHHHHHHHHHH CS
  Gln-synt_C   2 rdPRsvlkralarlaeeGl..tvvvgpElEFflfdkeedke.asksllevdse.............ekgrpaekggyfsvapvdeaedlrreivealea 84 
                 +dPRs++ ra+a+l+++G+  t+++gpE+EFf++d++++++ a+  ++evds+              +++ ++k+gyf+v+p+d+ +dlr+++v +le+
  CCG93024.1 111 KDPRSIAIRAEAYLKSTGIadTAYFGPEAEFFILDSVRYDNqANFAYYEVDSVegiwnsgkengqnFGYKIRHKEGYFPVPPADTLQDLRDQMVLTLES 209
                 69**************************************999999******9*************99******************************* PP

                 TT--EECCEEECCCT.EEEEEE--EECHHHHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTTS---BEEEEEEEEECTTEESSB-TTSGGGB-HHHHHHH CS
  Gln-synt_C  85 lgieveashhEvatg.QvEinlkfadalkaaDnvvtfKrvvkevArkhgltatFmpKplegdnGsgmHvhlSlwdkdgknlfadeddeyalselarhfi 182
                 +gi+ve+ hhEvat+ Q Ei++ ++++l+  D+++++K+v+k++Ark+g+t+tFmpKp++gdnGsgmH+h+Slw k+gk+lfa++    +lse+a+h+i
  CCG93024.1 210 MGIKVERQHHEVATAgQAEIDIVYNTLLRIGDDMMMYKYVIKNTARKYGKTVTFMPKPIFGDNGSGMHTHQSLW-KEGKPLFAGNR-YAGLSEMALHYI 306
                 **************99**********************************************************.**********8.456********* PP

                 HHHHHHHHHHHHHHS-SCCHHHHCSSSTTSSSBEEEESS-TTCSEEEE-..TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHHTT--------S-S CS
  Gln-synt_C 183 gGllkhakaltaltaptvnSYkRlvpgyeaPvalawgarNRsallRipa..skekakrvElRlpdasaNPYLalAallaAgldGienklepgepvekdl 279
                 gG++kha+alta+t+pt+nS+kRlvpg+eaPv+la++arNRsa++Rip+  +++k kr+E+R+pd+saNPYLa Aa+l+AgldGi+n+++pgep+ek++
  CCG93024.1 307 GGIIKHAPALTAITNPTTNSFKRLVPGFEAPVNLAYSARNRSAAIRIPTysANPKTKRIEFRTPDPSANPYLACAAMLMAGLDGIQNRIDPGEPMEKNI 405
                 *************************************************999*********************************************** PP

                 SSS-TTTHTSS-B--SSHHHHHHHHHCS.HHHCC..SS-HHHHHHHHHHHHHCHHHHHCT--HHHHHHH CS
  Gln-synt_C 280 yelspeerkgieelPasleeAlealeed.ellke..vlgeevieaylalkraEleeleeevsdwelery 345
                 yel+pee k+i+++P sl+ A++ale+d e+l +  v++++ ie+ l+l++++++ l+ +++++e+ +y
  CCG93024.1 406 YELPPEELKNIPKVPDSLSGAIDALERDhEFLMKgdVFTKDAIETLLTLRKKDYDMLRIRPHPLEFYMY 474
                 ********************************9999******************************998 PP

>> Gln-synt_N  Glutamine synthetase, beta-Grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.0   1.5e-32   1.4e-28       1      83 []      22     103 ..      22     103 .. 0.98
   2 ?   -2.5   0.0      0.48   4.3e+03       2      23 ..     160     181 ..     159     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 1.5e-32
                 T--EEEEEEE-SSS-EEEEEEEHHHHHHHTTTT-EEEETTSSTTT------EEEEEEEGGGEEE-SS-SS-.EEEEEEEEE-T CS
  Gln-synt_N   1 evkfvdlqFtDikgklkhvtipadelsedaleegvsFDGSsiegfaeieeSDmlLkPdlstavidPfreekktarvicdvydp 83 
                 +vk v+l+F+D+ g+++h+ti  d l+ + ++eg++FDGSsi+g+++i+eSDml++Pd+ ta+idPf +e+ t+++ic++ydp
  CCG93024.1  22 NVKLVNLKFCDLLGTWQHFTIGLDLLTPESFSEGIGFDGSSIRGWQGIQESDMLVMPDPYTAFIDPFIAEP-TLSLICSIYDP 103
                 699********************************************************************.*********97 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.48
                 --EEEEEEE-SSS-EEEEEEEH CS
  Gln-synt_N   2 vkfvdlqFtDikgklkhvtipa 23 
                 v  v+ ++ ++k++ +++ +++
  CCG93024.1 160 VDSVEGIWNSGKENGQNFGYKI 181
                 6678999*******99999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3208.26
//
Query:       CCG93025.1  [L=114]
Description: nitrogen regulatory protein P-II [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-42  143.0   1.7    4.4e-42  142.8   1.7    1.0  1  P-II      Nitrogen regulatory protein P-II
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.14   12.0   0.0    1.1  1  DUF2344   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> P-II  Nitrogen regulatory protein P-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   1.7   4.9e-46   4.4e-42       1     102 []       6     107 ..       6     107 .. 0.99

  Alignments for each domain:
  == domain 1  score: 142.8 bits;  conditional E-value: 4.9e-46
                 EEEEEEGGGHHHHHHHHHHTTGGCEEEEEEEEEESTCCEEEECTTEEEEEEEEEEEEEEEEEEGGGHHHHHHHHHHHH-SSSTTSEEEEEEEESEEEET CS
        P-II   1 ieaiirpekleevkeaLekagvkgltvtevkGrGkqkghtelyrgaeyevellpkvkleivvsdedvekvveaiikaaktgeiGDGkiFvlpveeviri 99 
                 ieaii+p+kleevkeaL+++g+ gltvtevkG+G+qkghte+yrg+ey+v++lpkvk+eiv ++e + k+ eaiik+aktg+iGDGkiFvlpv+e+iri
  CCG93025.1   6 IEAIIKPFKLEEVKEALTEIGIAGLTVTEVKGFGRQKGHTEIYRGSEYTVDFLPKVKIEIVLTEEILPKATEAIIKSAKTGKIGDGKIFVLPVTEAIRI 104
                 89************************************************************************************************* PP

                 TTT CS
        P-II 100 rtg 102
                 rt+
  CCG93025.1 105 RTE 107
                 *96 PP

>> DUF2344  Uncharacterized protein conserved in bacteria (DUF2344)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.5e-05      0.14      70     135 ..      11      81 ..       3     110 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.5e-05
     DUF2344  70 eevdpeevverLnaqlpegikileveeieekakslmallaaaeYrve.........eleealeeflaaeeilvek 135
                 ++ + eev+e+L +   +g++++ev+   ++ k  +++ + +eY+v+               ee+l + +  ++k
  CCG93025.1  11 KPFKLEEVKEALTEIGIAGLTVTEVKGFGRQ-KGHTEIYRGSEYTVDflpkvkieiV---LTEEILPKATEAIIK 81 
                 56789***********************988.9999**********87666644331...223333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 765.20
//
Query:       CCG93026.1  [L=49]
Description: hypothetical protein MFUM_90017 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 361.65
//
Query:       CCG93027.1  [L=463]
Description: Dihydrolipoyl dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-45  154.1   0.0    5.9e-45  153.7   0.0    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    7.5e-29  100.2   0.0    1.6e-28   99.1   0.0    1.6  1  Pyr_redox_dim   Pyridine nucleotide-disulphide oxidoreductase
    3.6e-16   59.5   0.4    7.2e-15   55.3   0.0    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    6.5e-10   38.7   1.1    2.5e-08   33.5   0.0    2.6  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    3.2e-07   29.8   5.4    0.00053   19.2   0.7    4.6  4  GIDA            Glucose inhibited division protein A
    9.2e-05   22.0   0.1    0.00039   19.9   0.1    1.9  2  FAD_oxidored    FAD dependent oxidoreductase
    0.00016   21.8   1.7    0.00088   19.5   0.2    2.3  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00022   20.6   0.7     0.0013   18.1   0.3    2.2  3  FAD_binding_3   FAD binding domain
    0.00027   20.2   0.3    0.00045   19.4   0.3    1.3  1  FAD_binding_2   FAD binding domain
     0.0023   16.7   4.2       0.43    9.2   0.5    3.2  4  HI0933_like     HI0933-like protein
      0.003   16.8   0.7      0.024   13.9   0.3    2.2  2  Thi4            Thi4 family
  ------ inclusion threshold ------
      0.015   14.9   0.7        5.4    6.5   0.3    2.3  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
      0.021   13.9   1.2        1.5    7.8   0.0    2.7  3  Lycopene_cycl   Lycopene cyclase protein
      0.024   14.5   0.6        6.9    6.5   0.4    2.3  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.033   13.6   0.0        2.7    7.3   0.1    2.3  2  ThiF            ThiF family
      0.042   13.2   0.4        4.3    6.7   0.0    2.3  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.052   14.1   0.0         18    5.9   0.0    3.1  3  XdhC_C          XdhC Rossmann domain
       0.86    9.1   2.4        9.9    5.6   0.2    2.8  3  DAO             FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.7   0.0   5.9e-48   5.9e-45       2     291 ..       8     323 ..       7     326 .. 0.86

  Alignments for each domain:
  == domain 1  score: 153.7 bits;  conditional E-value: 5.9e-48
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH................................HHHHCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx................................xxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias................................evvkkl 63 
                  dv++iG+G +G+ aa +l +ag++v++v+    l+g+cl +gc++ska+++++  ++ a+                                 + +++
   CCG93027.1   8 DVAIIGAGGGGYPAAFFLDKAGFRVLMVDpignLGGNCLAEGCVPSKAVREASLIRSYAKkysffgllgpspqvdwngilahkdrvqntryeLHKSEI 105
                  8***************************88889**************************************************999999999555667 PP

                  HHH.CCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T...SEEEEES-SHHHHHH CS
                  xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx RF
  Pyr_redox_2  64 nqg.ielllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp...krivvvGgGyiGvEl 157
                  +q+ i +++g  + ki  ++ k+++   +e++ +  ++++l++AtGs+p++l+ipG+ e +      + s + +kl+       + +++GgGyiGvE+
   CCG93027.1 106 QQSgILFYKG--IGKIVDDR-KIEVC--TENESFYATFKHLIIATGSRPHTLQIPGA-ELT------VSSHDLFKLESSVpfpTKPIIIGGGYIGVEV 191
                  7665888888..77775555.66662..2367899999*******************.444......3444444444333344777************ PP

                  HHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE...EEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
  Pyr_redox_2 158 AaalaklgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngekle...vvledgeeidadlvvvavGvrpstelle.eklgle 251
                  A+++ +lg++  ++e  + l  ++d+els++l ++l+ + + + l+++vk ++g++ ++e   v+++++ ++  dlv++a+G++  ++  + e lg +
   CCG93027.1 192 ASMFENLGCKPSILEFSKSLIGGFDRELSQFLFQKLQSR-ISIELEAQVKSVKGKEGNYEviyVKNDQEMSLFGDLVIMATGRECVSPE-GiEILGFQ 287
                  *************************************96.*****************55555566666666*************87655.44999997 PP

                  EEETTEEE--TTSBES.STTEEE-GGGCTECCSS--HHHHH CS
                  xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 252 lderggivvdeflrtn.vpgiyaiGDvaggkggpelaqaAv 291
                       ++ v  +l+    p+iya GDv    g+ +l + Av
   CCG93027.1 288 H--SKALSVTNTLQLYdFPHIYAPGDVN---GKSMLFHSAV 323
                  7..99999999999866***********...8888888887 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.0   1.6e-31   1.6e-28       1     109 [.     348     457 ..     348     458 .. 0.98

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 1.6e-31
                    BEEEEESSSEEEEEES-HHHHHHHHSG.EEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTS CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagie.ikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladt 95 
                    +p +vft+pe+asvGlteeeA ++++  i+v+k +++  +ra + +et+gf+Kl++d +++++lGahi G +a++li+ la+a++ gl +e la+ 
     CCG93027.1 348 VPYAVFTEPEIASVGLTEEEAIHMYGHrIEVIKYEYAIDARAEILGETEGFIKLIFDCEDKRLLGAHIGGIEASQLIAPLALALREGLDAEALARV 443
                    799********************99888******************************************************************** PP

                    BSSSSSTGGGGHCH CS
  Pyr_redox_dim  96 ihihPtlsealkea 109
                     ++hP +se +++a
     CCG93027.1 444 AFPHPMISEGINKA 457
                    *********99987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.37   3.7e+02       2      29 ..       9      36 ..       8      45 .. 0.87
   2 !   55.3   0.0   7.2e-18   7.2e-15       3      73 ..     180     249 ..     178     257 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.37
                EEEECSSHHHHHHHHHHHHTTSEEEEEE CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvve 29
                v+++G+G  g  +A +l + g +V +v+
  CCG93027.1  9 VAIIGAGGGGYPAAFFLDKAGFRVLMVD 36
                89***************99999998886 PP

  == domain 2  score: 55.3 bits;  conditional E-value: 7.2e-18
                 EEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSE CS
   Pyr_redox   3 vvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgv 73 
                 +++GgGyig+E+A+++ +lg+k +++e s+ l  ++D+e+s+ l +kl+ + i + l+++v++++g+e + 
  CCG93027.1 180 IIIGGGYIGVEVASMFENLGCKPSILEFSKSLIGGFDRELSQFLFQKLQSR-ISIELEAQVKSVKGKEGNY 249
                 79*************************************************.*************999763 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.6     0.064        64       2      28 ..      11      36 ..       8      43 .. 0.80
   2 !   33.5   0.0   2.5e-11   2.5e-08     110     266 ..     121     272 ..      89     277 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.064
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilE 28
                 IiGaG  G  aa  l kag+ ++l ++
   CCG93027.1 11 IIGAGGGGYPAAFFLDKAGF-RVLMVD 36
                 89999999999999999998.566654 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 2.5e-11
  Pyr_redox_3 110 edegfevetsketyeA..kkviiAtGefdkPnklnipGeeklvkhyskvk..efhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekee 203
                  +d++ ev t++e++ A  k++iiAtG   +P++l+ipG+e l + ++     e +  + +k ++iGg+  +v++A  + + g++ +++  ++++    
   CCG93027.1 121 DDRKIEVCTENESFYAtfKHLIIATGS--RPHTLQIPGAE-LTVSSHDLFklESSVPFPTKPIIIGGGYIGVEVASMFENLGCKPSILEFSKSLIGG- 214
                  45678899999977764579******9..***********.5555555541345556799*************************999887654443. PP

  Pyr_redox_3 204 sdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvk.tedgkkvev.kddvvlatG 266
                    ++ +l+    ++l++     +i ++ +a+vk++k ke +y+v   ++ ++++   d v++atG
   CCG93027.1 215 --FDRELSQFLFQKLQS-----RISIELEAQVKSVKGKEGNYEVIyVKNDQEMSLfGDLVIMATG 272
                  ..566777777777765.....588999999***********88745666666665666777799 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.7   5.3e-07   0.00053       1      47 [.       8      57 ..       8     167 .. 0.71
   2 ?    4.2   0.1     0.019        19       3      26 ..     180     203 ..     178     215 .. 0.86
   3 ?    1.5   0.0      0.12   1.2e+02     101     149 ..     223     272 ..     212     282 .. 0.71
   4 ?    2.7   0.0     0.055        55     345     386 ..     293     335 ..     285     339 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.3e-07
                CEEEE-SSHHHHHHHHHHHHTT--EEEE...ES-GGGTT--SSSSEEE-T CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi...thkldtiaelsCnpsiggi 47
                dv +iG+G  G+ AA+ + ++G++vl++    +  ++++  +C ps    
  CCG93027.1  8 DVAIIGAGGGGYPAAFFLDKAGFRVLMVdpiGNLGGNCLAEGCVPSKAVR 57
                799*************************8877778889999999997654 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.019
                 EEE-SSHHHHHHHHHHHHTT--EE CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvl 26 
                 i+iGgG  G+e A    +lG+k  
  CCG93027.1 180 IIIGGGYIGVEVASMFENLGCKPS 203
                 89******************9865 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.12
                 HHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-E..EEECEEEE--T CS
        GIDA 101 vteklenepnleiieeeveeliveekkvkgvvtedget..ikakavviatG 149
                 + +kl++   +e+ e++v++++ +e++ ++++ +++++  +  + v++atG
  CCG93027.1 223 LFQKLQSRISIEL-EAQVKSVKGKEGNYEVIYVKNDQEmsLFGDLVIMATG 272
                 4556666555554.678999999997777777666665115688******9 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.055
                 GB-TTSBBSSSBTEEE-CGGGTB-S.HHHHHHHHHHHHHHHHH CS
        GIDA 345 qllntLetkkvkgLflAGqinGteG.YeEaaaqGllAGinaar 386
                  ++ntL++ + +++++ G++nG +  +  a+ q  ++++n+a+
  CCG93027.1 293 SVTNTLQLYDFPHIYAPGDVNGKSMlFHSAVLQSRITAHNIAA 335
                 4678******************975244555577777777765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   3.9e-07   0.00039       1      45 [.       8      52 ..       8      69 .. 0.89
   2 ?   -0.9   0.0       0.8     8e+02      86     144 ..     217     272 ..     181     273 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.9e-07
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvat 45
                  Dv ++G+g +G+ AA    +aG +vl+v++ g lGG+  +++  +
    CCG93027.1  8 DVAIIGAGGGGYPAAFFLDKAGFRVLMVDPIGNLGGNCLAEGCVP 52
                  9************************************98877655 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.8
  FAD_oxidored  86 pevakavleemlaeagvtvllntrlvevekegkriesvtveskegrktirAkvfiDATg 144
                    e  + +++++  ++++ + l++++++v+ ++++ e + v++ +++  + ++++i ATg
    CCG93027.1 217 RELSQFLFQKL--QSRISIELEAQVKSVKGKEGNYEVIYVKN-DQEMSLFGDLVIMATG 272
                   44444445544..35799999999999999877888888854.4578888888888887 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.2   8.9e-07   0.00088       1      36 [.      11      46 ..      11      54 .. 0.96
   2 ?    1.0   0.1      0.51   5.1e+02       1      27 [.     181     207 ..     181     215 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 8.9e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36
                   I+GaG +G  aA +L kagf+vl ++    lGG++ 
     CCG93027.1 11 IIGAGGGGYPAAFFLDKAGFRVLMVDPIGNLGGNCL 46
                   9*********************************96 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.51
                    EE--SHHHHHHHHHHHCCTEEEEEE-S CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllek 27 
                    I+G+G  G   A+   + g++  +le 
     CCG93027.1 181 IIGGGYIGVEVASMFENLGCKPSILEF 207
                    9*******9999999999988888885 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.3   1.3e-06    0.0013       2      31 ..       7      36 ..       6      42 .. 0.95
   2 ?   -0.5   0.0      0.57   5.7e+02       5      31 ..     180     206 ..     177     211 .. 0.86
   3 ?   -3.1   0.0       3.4   3.4e+03     126     200 ..     237     307 ..     220     324 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.3e-06
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlve 31
                   +dV+I+GaG  G  +a +L +aG rv++v+
     CCG93027.1  7 VDVAIIGAGGGGYPAAFFLDKAGFRVLMVD 36
                   89***************************8 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.57
                    EEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlve 31 
                    +I+G+G  G+  a++  + G +  ++e
     CCG93027.1 180 IIIGGGYIGVEVASMFENLGCKPSILE 206
                    8*************9999998877776 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.4
                    EEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEEEEEC-SCCCT CS
  FAD_binding_3 126 tevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldvlfdadlsdiv 200
                    ++v+s++  e + +  v + ++++e  +  + ++ a G    + +  gie+ g++++  + v ++l   d+++i 
     CCG93027.1 237 AQVKSVKGKEGNYE--VIYVKNDQEMSLFGDLVIMATGRECVSPE--GIEILGFQHSKALSVTNTLQLYDFPHIY 307
                    44444443333332..23445566667888888888888774444..5666677777666666666666666554 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3   4.6e-07   0.00045       1      37 [.       8      44 ..       8      50 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.6e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   Dv +iG+G++G+ AA  + +aG +v++v+  ++ gg+
     CCG93027.1  8 DVAIIGAGGGGYPAAFFLDKAGFRVLMVDPIGNLGGN 44
                   9****************************99999886 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.5   0.00044      0.43       2      36 ..       8      42 ..       7      50 .. 0.89
   2 ?   -2.7   0.0       1.8   1.8e+03     139     164 ..     121     147 ..     102     150 .. 0.69
   3 ?   -0.7   0.0      0.45   4.5e+02       4      34 ..     180     210 ..     177     213 .. 0.88
   4 !    6.7   0.0    0.0025       2.5     114     178 ..     222     287 ..     217     297 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00044
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 dv++iG+G  G  aA  + k+g rVl+++   +lg
   CCG93027.1  8 DVAIIGAGGGGYPAAFFLDKAGFRVLMVDPIGNLG 42
                 89**************************9877776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
                  TTE.EEEEE.TTE.EEEESEEEE---- CS
  HI0933_like 139 edgkfrvktksee.eleadklvlAtGG 164
                  +d+k++v t++e+   + ++l++AtG+
   CCG93027.1 121 DDRKIEVCTENESfYATFKHLIIATGS 147
                  56667888833331345689****997 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.45
                  EEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like   4 iviGgGaAGlmaAisaakrgkrVlllekakk 34 
                  i+iGgG  G+  A   ++ g++  +le  k+
   CCG93027.1 180 IIIGGGYIGVEVASMFENLGCKPSILEFSKS 210
                  9**************9999999999997765 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0025
                  HHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE....TTEEEEESEEEE----SS-GGGT--SHHHH CS
  HI0933_like 114 allkelkeagvklrletevksvekeedgkfrvkt...kseeeleadklvlAtGGlSiPklGstgkgyk 178
                  +l ++l +++++++le +vksv+ +e++ ++v +   ++e +l  d +++AtG + +   G +  g++
   CCG93027.1 222 FLFQKL-QSRISIELEAQVKSVKGKEGN-YEVIYvknDQEMSLFGDLVIMATGRECVSPEGIEILGFQ 287
                  555555.4679***********766555.4443332156667889********988877666655555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.3   2.4e-05     0.024      16      66 ..       5      54 ..       1      62 [. 0.84
   2 ?    0.7   0.0      0.26   2.5e+02      21      57 ..     180     215 ..     175     257 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-05
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTBSE CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlfsa 66
                   Dv+i+GaG  G  aa+ l k+ +++v++++    +GG     G + s+
  CCG93027.1  5 LTVDVAIIGAGGGGYPAAFFLDKA-GFRVLMVDPIGNLGGNCLAEGCVPSK 54
                568*********************.*******9988888887777766555 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.26
                 EEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT CS
        Thi4  21 vivGaGssGLtaayylakkpdlkvailersvspGGGa 57 
                 +i+G+G  G+  a ++ +  + k  ile s s+ GG 
  CCG93027.1 180 IIIGGGYIGVEVASMFENL-GCKPSILEFSKSLIGGF 215
                 8999999999999998877.99999999999988885 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.3    0.0054       5.4       2      30 ..       8      36 ..       7      38 .. 0.95
   2 ?    6.3   0.0    0.0063       6.3       5      41 ..     181     217 ..     178     244 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0054
                    EEEEE--STTHHHHHHHHHHCTSEEEEE- CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvD 30
                     +++iG+G  G + a  l ++g+ v++vD
      CCG93027.1  8 DVAIIGAGGGGYPAAFFLDKAGFRVLMVD 36
                    589*************************9 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0063
                     EE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCT CS
  UDPG_MGDP_dh_N   5 viGlGYvGlvtaavlaeighevigvDideekvdklns 41 
                     +iG GY+G+  a ++ ++g +  ++  +++ +  + +
      CCG93027.1 181 IIGGGYIGVEVASMFENLGCKPSILEFSKSLIGGFDR 217
                     8***************999876666666666655555 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.3     0.027        27       1      33 [.       8      38 ..       8      45 .. 0.91
   2 ?   -1.0   0.0      0.72   7.2e+02       3      36 ..     180     211 ..     180     215 .. 0.81
   3 ?    7.8   0.0    0.0015       1.5      88     168 ..     218     302 ..     206     307 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.027
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieas 33
                   Dv++iGaG  g   A  l   k+g +v+++++ 
     CCG93027.1  8 DVAIIGAGGGGYPAAFFL--DKAGFRVLMVDPI 38
                   9*****************..**********985 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.72
  Lycopene_cycl   3 vviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    ++iG+G  g+ +A     ++ g k  ++e s+sl
     CCG93027.1 180 IIIGGGYIGVEVASMF--ENLGCKPSILEFSKSL 211
                    79***********998..7777777777766665 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0015
  Lycopene_cycl  88 rlkeellerlvengvklleakvesveeeeageslvvleggr..kirarlvvdarglaslk...karrlglQtfyGvevevdnppfd 168
                    +l + l ++l +   + lea+v+sv+ +e    ++++++++   + + lv+ a+g        +   lg+Q+   + v    + +d
     CCG93027.1 218 ELSQFLFQKLQSRISIELEAQVKSVKGKEGNYEVIYVKNDQemSLFGDLVIMATGREC-VspeGIEILGFQHSKALSVTNTLQLYD 302
                    56666777777777799*************7777777777757899*********432.24546778999*999999988888887 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.4     0.007       6.9       2      30 ..       9      37 ..       8      51 .. 0.92
   2 ?    5.9   0.0     0.011        11       4      56 ..     181     234 ..     180     253 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.007
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdi 30
                va+iGaG  G   a  + +ag++V +vd 
  CCG93027.1  9 VAIIGAGGGGYPAAFFLDKAGFRVLMVDP 37
                9**************************96 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.011
                 EE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH.HHHCCTTTTSS- CS
     3HCDH_N   4 viGaGtmGagiaavfasagleVvlvdiseealekalekiek.sleklvekgklk 56 
                 +iG G +G ++a++f + g++  +++ s++ +    +++++  ++kl+++ +++
  CCG93027.1 181 IIGGGYIGVEVASMFENLGCKPSILEFSKSLIGGFDRELSQfLFQKLQSRISIE 234
                 8********************999999998888888877774455555555544 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0028       2.7      19      46 ..       7      34 ..       4      37 .. 0.90
   2 ?    3.8   0.0     0.031        30      19      43 ..     177     201 ..     158     207 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0028
                SEEEEE--SHHHHHHHHHHHHHTTTEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 19 skvllvGaGglGsellknLalsGvgklt 46
                + v+++GaGg G +++  L ++G++ l 
  CCG93027.1  7 VDVAIIGAGGGGYPAAFFLDKAGFRVLM 34
                679*********************9775 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.031
                 SEEEEE--SHHHHHHHHHHHHHTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  19 skvllvGaGglGsellknLalsGvg 43 
                 +k  ++G G +G e++ ++  +G++
  CCG93027.1 177 TKPIIIGGGYIGVEVASMFENLGCK 201
                 7999***************999997 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.024        24      38      70 ..       8      40 ..       5      57 .. 0.91
   2 ?    6.7   0.0    0.0043       4.3      41      62 ..     181     202 ..     176     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.024
                  EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkafgmkviaydrskk 70
                   v+iiG+G  G  +a  l + g++v+++d+  +
    CCG93027.1  8 DVAIIGAGGGGYPAAFFLDKAGFRVLMVDPIGN 40
                  589**************************9765 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0043
                   EES-SHHHHHHHHHHHHTT-EE CS
  2-Hacid_dh_C  41 iiGlGrIGqavakrlkafgmkv 62 
                   iiG G IG +va +++ +g+k 
    CCG93027.1 181 IIGGGYIGVEVASMFENLGCKP 202
                   9*******************85 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.018        18       1      31 [.       9      39 ..       9     108 .. 0.86
   2 ?    4.6   0.0     0.044        44       2      28 ..     180     206 ..     180     258 .. 0.91
   3 ?   -1.9   0.0       4.5   4.5e+03      86     104 ..     429     446 ..     410     447 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.018
                EEEE--STTHHHHHHHHHHHTEEEEEEES-G CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpre 31
                ++i+Gag  + + a ++ ++gfrv +vdp  
  CCG93027.1  9 VAIIGAGGGGYPAAFFLDKAGFRVLMVDPIG 39
                589*************************965 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.044
                 EEE--STTHHHHHHHHHHHTEEEEEEE CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvd 28 
                 +i+G+g ++ ++a++ ++lg++ ++++
  CCG93027.1 180 IIIGGGYIGVEVASMFENLGCKPSILE 206
                 69*******************988765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.5
                 TTS.--.......TTEESS CS
      XdhC_C  86 erlraaglseeelarlhaP 104
                  +l ++gl++e+lar+  P
  CCG93027.1 429 LAL-REGLDAEALARVAFP 446
                 455.679999999999887 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2      0.01       9.9       1      28 [.       8      37 ..       8      44 .. 0.92
   2 ?    1.7   0.3      0.15   1.5e+02       3      15 ..     180     192 ..     179     197 .. 0.89
   3 ?   -2.0   0.0       2.1   2.1e+03     147     201 ..     218     272 ..     216     287 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.01
                EEEEECTSHHHHHHHHHHHHTT..EEEEES CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllek 28
                dv+iiG+G  G  +A++L ++g  V+ ++ 
  CCG93027.1  8 DVAIIGAGGGGYPAAFFLDKAGfrVLMVDP 37
                8*****************999999999985 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.15
                 EEECTSHHHHHHH CS
         DAO   3 viiGGGiiGlstA 15 
                 +iiGGG+iG+ +A
  CCG93027.1 180 IIIGGGYIGVEVA 192
                 7********9666 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE...EECT.EEE.EEEEEEEE--G CS
         DAO 147 kltaalaraaealGveilegtevtgleeedgkvwgve...rttp.gen.daadavVnaaG 201
                 +l ++l ++++++ + i ++++v++++ ++g  ++v    +  + +   +  d v++a+G
  CCG93027.1 218 ELSQFLFQKLQSR-ISIELEAQVKSVKGKEGN-YEVIyvkN--DqEMSlFG-DLVIMATG 272
                 5678888899888.888899999999665544.33334322..32333234.88999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 3198.45
//
Query:       CCG93028.1  [L=219]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1575.27
//
Query:       CCG93029.1  [L=260]
Description: SAM-dependent methyltransferase (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-14   52.4   0.0    1.3e-13   51.9   0.0    1.3  1  Methyltransf_24  Methyltransferase domain
    0.00015   21.2   0.0    0.00025   20.4   0.0    1.4  1  TylF             Macrocin-O-methyltransferase (TylF)
  ------ inclusion threshold ------
       0.13   12.7   0.0       0.26   11.7   0.0    1.5  1  Pfk_N            Phosphofructokinase N-terminal domain yeast


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   2.1e-17   1.3e-13       1     104 [.      91     196 ..      91     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 2.1e-17
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare...aglddrvrlikadseealaslaagsiDllfiDgghaaeavledleal 91 
                      +EiGv++G+s+lw+l+ +    +++++ +d +  ++ +  ++ +   +g ++ ++++k+ s + ++++   siD+++iDg+   +  l+dl ++
       CCG93029.1  91 LEIGVHEGRSALWMLENILTDPTSTIIIIDDFG-EHSYNTFMYNvslSGQANKFKILKGLSTDKIKEVPLNSIDIAYIDGSGRSDIMLDDLINV 183
                      7******************************99.44455555555669*********************9************************ PP

  Methyltransf_24  92 lprlapggvvlfd 104
                      ++r+++ggv+++ 
       CCG93029.1 184 WDRVRQGGVIICN 196
                      ***********96 PP

>> TylF  Macrocin-O-methyltransferase (TylF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.2e-08   0.00025     165     231 ..     141     208 ..     114     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.2e-08
        TylF 165 dqvrflkGwFkdtLptapieklallRlDgdly.estldaleaLYdkvskGGfviiDDyaaveecreav 231
                 ++ ++lkG+ +d ++++p ++++++ +Dg    + +ld l +++d+v +GG++i + y ++++ r a+
  CCG93029.1 141 NKFKILKGLSTDKIKEVPLNSIDIAYIDGSGRsDIMLDDLINVWDRVRQGGVIICNRYRMTKHLRWAL 208
                 56789************************876155679**********************99888765 PP

>> Pfk_N  Phosphofructokinase N-terminal domain yeast
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.3e-05      0.26      37      70 ..     139     172 ..     122     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.3e-05
       Pfk_N  37 eantkselkGvstdslkeiWlesFplsevdsnGk 70 
                 +an+ + lkG+std +ke+ l+s  ++ +d +G+
  CCG93029.1 139 QANKFKILKGLSTDKIKEVPLNSIDIAYIDGSGR 172
                 56667777**********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1755.34
//
Query:       CCG93030.1  [L=166]
Description: Outer membrane protein or related peptidoglycan-associated (Lipo)protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.032   14.2  12.5      0.049   13.6  12.5    1.3  1  Gly-zipper_Omp  Glycine zipper


Domain annotation for each model (and alignments):
>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6  12.5   2.8e-06     0.049       6      46 .]      52      94 ..      49      94 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.8e-06
  Gly-zipper_Omp  6 GAa..aGaliGgavggrgtGaliGAavGaavGgliGaamdkqe 46
                    GAa  aG   G+  g +++  ++GA+vGa++ ++  ++ dk++
      CCG93030.1 52 GAAgaAGFFAGKEIGKSNAAGAVGAGVGAVGAYALNKYFDKKR 94
                    544004444555678999999*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1418.61
//
Query:       CCG93031.1  [L=825]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0054   16.4   0.1        5.9    6.7   0.0    3.5  3  XPC-binding  XPC-binding domain
  ------ inclusion threshold ------
       0.95   10.1   2.7        3.3    8.3   0.0    3.2  4  ADSL_C       Adenylosuccinate lyase C-terminus


Domain annotation for each model (and alignments):
>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.14   1.3e+03       4      28 ..     132     156 ..     130     161 .. 0.73
   2 !    4.9   0.0    0.0024        21      12      30 ..     688     706 ..     686     716 .. 0.85
   3 !    6.7   0.0   0.00066       5.9      13      34 ..     752     773 ..     750     774 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.14
  XPC-binding   4 LrnnpqFqqlRqlvqqnPqlLqplL 28 
                  L n + + +lR ++   P+  +p+L
   CCG93031.1 132 LSNPQAISALRNYLLYTPNSYPPVL 156
                  5566668888888888888888887 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0024
  XPC-binding  12 qlRqlvqqnPqlLqplLqq 30 
                   lR++++q+P ++  lL +
   CCG93031.1 688 DLREVIAQDPVIMRNLLTR 706
                  69**************986 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.00066
  XPC-binding  13 lRqlvqqnPqlLqplLqqlaqs 34 
                  l +++++nP lLq+++ ++++s
   CCG93031.1 752 LATAMRENPFLLQAIITHIGKS 773
                  67899**************986 PP

>> ADSL_C  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.37   3.3e+03      27      49 ..     346     370 ..     345     377 .. 0.69
   2 ?    8.3   0.0   0.00037       3.3       7      47 ..     655     700 ..     654     713 .. 0.87
   3 ?   -2.0   0.0      0.62   5.6e+03      28      46 ..     743     762 ..     741     769 .. 0.81
   4 ?   -3.9   0.0         2   1.8e+04      25      44 ..     787     809 ..     785     815 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.37
                 HHHHHHHHC.HHHHHHT-HHHHC.H CS
      ADSL_C  27 eaamkawee.llelLaadpevkk.s 49 
                 ea  +a +e l ++L ++++++k +
  CCG93031.1 346 EAVSEATREaLCQTLSKEEAISKlA 370
                 5566677778999999999998543 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00037
                 HHHHHHH.HTH-HHHHHHHHHHHHHHHHHC....HHHHHHT-HHHH CS
      ADSL_C   7 rvllaLv.kglgReeAyelVqeaamkawee....llelLaadpevk 47 
                 +vl+ ++ + l+R e +++ q+ a +  ++    l+e++a+dp ++
  CCG93031.1 655 NVLVFATeNTLERDEERKIAQKIAVANGRTptedLREVIAQDPVIM 700
                 6777788559*********************************987 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.62
                 HHHHHHHC.HHHHHHT-HHH CS
      ADSL_C  28 aamkawee.llelLaadpev 46 
                  am+ w++ l+++++++p +
  CCG93031.1 743 EAMEIWTDsLATAMRENPFL 762
                 59****99*99999988865 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 2
                 HHHHHHHHHHC...HHHHHHT-H CS
      ADSL_C  25 Vqeaamkawee...llelLaadp 44 
                 ++ea m+a  +   + e+L+ d+
  CCG93031.1 787 IEEAIMDAILSdriFWENLLVDK 809
                 77888888888888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 5408.12
//
Query:       CCG93032.1  [L=887]
Description: Type IV secretory pathway, VirB4 component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-05   22.7   0.0       0.18   10.7   0.0    2.2  2  AAA_10     AAA-like domain
    9.2e-05   22.9   0.0    0.00031   21.2   0.0    1.9  1  AAA_16     AAA ATPase domain
    0.00074   19.2   1.8     0.0014   18.3   0.2    2.1  3  TraC_F_IV  F pilus assembly Type-IV secretion system for plas
  ------ inclusion threshold ------
      0.036   14.3   0.3       0.17   12.2   0.0    2.3  2  AAA_22     AAA domain
       0.24   11.9   1.5          1    9.9   0.1    2.7  2  AAA_18     AAA domain


Domain annotation for each model (and alignments):
>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00011      0.39      19      62 ..     477     520 ..     468     558 .. 0.78
   2 !   10.7   0.0     5e-05      0.18     210     318 ..     662     775 ..     658     790 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00011
      AAA_10  19 tnasasliiGdlGnGKSvlakllvlyisllggkaliiDpkkere 62 
                 + as   i+G  G GKS la+l+vl   l +  ++i+D+ +   
  CCG93032.1 477 EGASMLYISGVKGSGKSALAQLIVLRHFLENSILVILDKGNSYD 520
                 33555589******************999999999999876644 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 5e-05
      AAA_10 210 erlteekllsvavlfviaafarefassdkkefkvvifDEawiftssaeGkkllkelvRiGRsynaavylvtqsadDvlkee.....lknniglklaFre 303
                 e + + k l+ a++ ++  f ++++ s+ ++fk+ +f E w   s +  ++l+ e  +  R+   av+  +q+  D+ ++        +n+ + + F +
  CCG93032.1 662 EYISKDKDLAAALIPMAVLFVSDVILSNPNIFKMLVFGEMWQHVSNPATANLIIEAFKTYRKKRCAVIGESQAILDLVDNPsvakaVIQNVDTWILFPQ 760
                 5566677788899999999*********************************************************98776566556677778888887 PP

      AAA_10 304 tdkeeikkvLeflgl 318
                   +++i+  ++ l+l
  CCG93032.1 761 GSEHHIEYAVKELEL 775
                 777777766665555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   8.6e-08   0.00031      21     145 ..     476     616 ..     469     638 .. 0.62

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 8.6e-08
      AAA_16  21 sgrpelvllsGesGvGKsslvrell.ralekdggiflrgkcdqlesa........ipysa.laqalareellrqlldeaesaeleawrekleeala... 106
                   + +++++sG +G+GKs+l++ +  r++ ++ ++++  k  ++++         i++++   +++   e+++  +   e +e++++        +   
  CCG93032.1 476 NEGASMLYISGVKGSGKSALAQLIVlRHFLENSILVILDKGNSYDRLvelcggttIRLDMaTPKCFNPFEVYTRRNKSGELTEPSDYEL------Tkvv 568
                 333499***************775438999999999****9999222222222224444445555555555555444444433333333......1333 PP

      AAA_16 107 ..........avpelagaeasrllellkrllallsrderplvlvlDdlq 145
                            +++l+ +e++ l  l ++ ++ + +  + ++++lDd+ 
  CCG93032.1 569 scleilatsqRGNSLSIEEKNILESLTRQTFSNAVK-NKAFYVTLDDFS 616
                 456777666555555555555555555555577777.667*******96 PP

>> TraC_F_IV  F pilus assembly Type-IV secretion system for plasmid transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2   3.8e-07    0.0014      41     195 ..      70     235 ..      59     278 .. 0.82
   2 ?   -1.4   0.0      0.39   1.4e+03     115     152 ..     286     315 ..     271     327 .. 0.77
   3 ?   -3.3   0.0       1.5   5.4e+03     145     207 ..     564     622 ..     546     625 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.8e-07
   TraC_F_IV  41 avaeaLesllsidlpdgtp.vQfllfdspdideylealrdyr.....tq.ylreqeehlralarprglfldtgvtgslsarwrgqlRrfrlvlyrrvpg 132
                 +++++L+ ll ++lp +    Q +     d +++lea+++       ++   r+ +++++++a+++   ++t++    +     qlR++  +l +  ++
  CCG93032.1  70 DLQNQLRLLL-TQLPHEISqTQHIFTCNGDYGPLLEAFASIPsdpqvKEfRERKAKRLYQRMAKRKLVRIETHTIL--TVAPSDQLRETEWFLRIGSRE 165
                 5788888888.56666555599999999999******99999888876655677777*********9999999877..34444599*********8887 PP

   TraC_F_IV 133 kaslsr........etpeeelnelrerlessLrsaglqarrldaedllawllrllnpdpaaeedaeasdyd 195
                 ++++ r        ++ +++++ +   + + Lr+a+ ++++lda ++ +  +rl np  a+ee+++  +yd
  CCG93032.1 166 SSEAVRkrisktqfDSAISSIKAAEAVFAEILRKASARFFPLDAYEIADYFFRLWNPGLAVEETMKV-NYD 235
                 7777777999999999*********************************************776555.455 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.39
   TraC_F_IV 115 wrgqlRrfrlvlyrrvpgkaslsretpeeelnelrerl 152
                 ++ + R++r+ l++r   k+     ++++el++lr+r+
  CCG93032.1 286 VGLPFRDVRVSLVVR---KT-----DKIKELEKLRKRI 315
                 567889999999994...22.....2477888888886 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.5
   TraC_F_IV 145 lnelrerlessLrsaglqarrldaedllawllrllnpdpaaeedaeasdydeekdlaeqlvds 207
                 l ++ + le   +s   ++   +++++l+ l r +  +     +++   y + +d+++q+ ++
  CCG93032.1 564 LTKVVSCLEILATSQRGNSLSIEEKNILESLTRQTFSNAVK--NKAF--YVTLDDFSRQMAYR 622
                 55555555555555555556666666666666666655444..2233..77777888888776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       4.7   1.7e+04      97     110 ..     353     361 ..     344     376 .. 0.66
   2 ?   12.2   0.0   4.6e-05      0.17       3      29 ..     477     503 ..     474     535 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 4.7
      AAA_22  97 iDEaqhlrseeale 110
                 i+Eaq+l     l+
  CCG93032.1 353 IEEAQNL-----LR 361
                 7889986.....22 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.6e-05
      AAA_22   3 ktagilvvtGesGtGKTtllrrlleql 29 
                 ++a++l++ G +G+GK+ l++ ++ ++
  CCG93032.1 477 EGASMLYISGVKGSGKSALAQLIVLRH 503
                 589******************998876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2         1   3.7e+03      16      79 ..     306     371 ..     301     395 .. 0.51
   2 ?    9.9   0.1   0.00029         1       3     103 ..     484     614 ..     483     619 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1
      AAA_18  16 keLskrlgf..........gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvi 79 
                 keL+k+ +           g nl d++++ +    +       ++++  ++ ++++++l+e++s    g++ ++
  CCG93032.1 306 KELEKLRKRidwadqrmrlGLNLVDMLYKPHENRRESGI----QNIEAWMQIEEAQNLLREIRS----GDDDLL 371
                 555554422355555556666777666664444444444....333333333445555555543....444444 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00029
      AAA_18   3 ltGtpGvGKttlakeLskrlgf..............gvnlrdvakenglllevdpe.............aldeskrldedkldklldaleenss..... 69 
                 ++G+ G+GK+ la+ +  r+ f               ++l +++    ++l+   +             +  e  +  +  l k++++le  +      
  CCG93032.1 484 ISGVKGSGKSALAQLIVLRH-FlensilvildkgnsYDRLVELCGGTTIRLDMATPkcfnpfevytrrnKSGELTEPSDYELTKVVSCLEILATsqrgn 581
                 89**************6663.534466677555555333333333333333333335555555555555455555555555556666666555588888 PP

      AAA_18  70 aleegknlvidghlaeleseaakdikkvvLtasp 103
                 +l  ++  +++++  + +s a k +  +++t+++
  CCG93032.1 582 SLSIEEKNILESLTRQTFSNAVKNKA-FYVTLDD 614
                 44444444999999999999999988.9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 5739.76
//
Query:       CCG93033.1  [L=135]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 993.86
//
Query:       CCG93034.1  [L=155]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-05   22.6   1.2      0.063   13.5   0.0    2.1  2  TrbC      TrbC/VIRB2 family


Domain annotation for each model (and alignments):
>> TrbC  TrbC/VIRB2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.3   0.00014       2.5      36      97 ..      16      76 ..       1      78 [. 0.86
   2 !   13.5   0.0   3.5e-06     0.063      36      98 ..      90     149 ..      79     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00014
        TrbC 36 dpvetvlqnivdfltgplakviatiaiivaGimlafgrlswrtlvmvviGiviifgAssivs 97
                dp +++l +i +f +  l      +  + +Gi  a +  ++++ ++ v+G +i+  A+++ s
  CCG93034.1 16 DPLQQALSQIWGFQSS-LFLSFLSLYTVYLGINHALHTVEMERWGAFVAGSIILLTAQTLGS 76
                7889999999998888.999999999********************************9976 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.5e-06
        TrbC  36 dpvetvlqnivdfltgplakviatiaiivaGimlafgrlswrtlvmvviGiviifgAssivst 98 
                 +  ++++  ++++l+    ++i++  +++ G+ml+f+r     +++ ++G+++i++++ +v +
  CCG93034.1  90 NQSDNPIPGFISSLQD-YLYWISLSLLVFGGLMLFFRR--PAFAIGAIVGAAVIYAGPHLVHG 149
                 5566777788888888.8899*****************..55678899999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1194.00
//
Query:       CCG93035.1  [L=114]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.088   13.0   4.8       0.13   12.5   4.8    1.4  1  TrbC      TrbC/VIRB2 family


Domain annotation for each model (and alignments):
>> TrbC  TrbC/VIRB2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.8   7.4e-06      0.13      13      98 ..      14     108 ..       1     109 [. 0.66

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.4e-06
        TrbC  13 lalalalvllllaspalAqaagg............dpvetvlqnivdfltgplakviatiaiivaGimlafgrlswrtlvmvviGiviifgAssivst 98 
                 +a+++++++ ++  + +  a+g+            +   t lq+++  ++   +++i++  +++ G+m++f+r +  t++++v+++ +i+g++ ++++
  CCG93035.1  14 IAILSIFICYVINASISYGAGGTgvlnvtplngadAEGFTTLQQLQMAFSD-YGYLISLCLLVFGGVMWFFNR-PAFTIGALVAAA-VIYGGPHLANG 108
                 334444444444333333333334777777777444444679*********.*********************.777777776655.55666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 750.17
//
Query:       CCG93036.1  [L=264]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1937.72
//
Query:       CCG93037.1  [L=254]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.3   11.5   2.4        0.3   11.5   0.7    1.8  2  Aida_N    Aida N-terminus
       0.88    9.1   8.4      0.071   12.7   3.4    1.6  2  TMCO5     TMCO5 family


Domain annotation for each model (and alignments):
>> Aida_N  Aida N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.55     5e+03      42      68 ..      60      86 ..      55     105 .. 0.62
   2 ?   11.5   0.7   3.3e-05       0.3      35     101 ..     182     252 ..     176     254 .] 0.71

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.55
      Aida_N 42 sseltedqkktlekvatalelRakalq 68
                ss+l+++++k l+k  t l  R ++  
  CCG93037.1 60 SSNLSNKESKPLKKNETNLIPRENKST 86
                566777777777776666655555444 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.3e-05
      Aida_N  35 kkeaesqsseltedqkktlekvatalelRakalqavdg.....eesitledlkkleevlksilsdevkefPl 101
                 kk+ e++   l+  q+ +l+++a+  +l + + ++ ++      +si++e+ k+  + + +il+++++e+Pl
  CCG93037.1 182 KKAYEEEIAALSRRQAALLRNIAVLQNLATSENSSKQTsstesIDSIEKEQ-KNNMQSMAHILPNTQEEYPL 252
                 56667788999*************999987665555542221144555555.444567999**********8 PP

>> TMCO5  TMCO5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.24   2.1e+03     121     126 ..      83      88 ..      57     125 .. 0.51
   2 ?   12.7   3.4   7.9e-06     0.071      57     126 ..     172     242 ..     158     250 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.24
       TMCO5 121 qksees 126
                 +ks++ 
  CCG93037.1  83 NKSTDR 88 
                 111111 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 7.9e-06
       TMCO5  57 fsenek.edalkeLeletaklekkneiLlkevveLqkkisrkeskqddleketlkqkleelkvklqksees 126
                 f+ +++ +++ k  e+e a l+++ ++Ll++++ Lq+  + ++s ++++  e+ ++  +e k  +q + + 
  CCG93037.1 172 FIVSSNgQQQKKAYEEEIAALSRRQAALLRNIAVLQNLATSENSSKQTSSTESIDSIEKEQKNNMQSMAHI 242
                 33333304445559***********************9888887777777779999999999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1672  (0.0932567); expected 358.6 (0.02)
Passed bias filter:                      678  (0.0378158); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 1972.34
//
Query:       CCG93038.1  [L=455]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.52
# Mc/sec: 2630.75
//
Query:       CCG93039.1  [L=325]
Description: DNA-directed RNA polymerase, sigma subunit (Sigma70/sigma32) (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-05   23.7   0.9       0.03   13.8   0.1    2.5  2  Sigma70_r4       Sigma-70, region 4
    0.00023   21.2   0.1      0.052   13.6   0.0    2.3  2  Sigma70_r3       Sigma-70 region 3
     0.0039   16.9   0.2      0.014   15.2   0.2    1.9  1  Sigma70_r2       Sigma-70 region 2
  ------ inclusion threshold ------
      0.086   12.7   0.2       0.24   11.2   0.1    1.8  2  BsuBI_PstI_RE_N  BsuBI/PstI restriction endonuclease HTH doma
       0.17   11.7   0.7        1.9    8.4   0.0    2.8  3  HTH_23           Homeodomain-like domain


Domain annotation for each model (and alignments):
>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1   0.00056         2      16      34 ..     161     180 ..     156     182 .. 0.91
   2 !   13.8   0.1   8.5e-06      0.03       1      49 [.     234     288 ..     234     289 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00056
                 HH.TTT--HHHHHHHHTS-H CS
  Sigma70_r4  16 rf.geglTleEIgerlgiSr 34 
                 rf ++glT eEI e +g S+
  CCG93039.1 161 RFlEQGLTVEEITELYGCSL 180
                 7889*************996 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 8.5e-06
                 HHHHS-HHHHHHHHHHH......TTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrf......geglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 aL++L++  r+++ + f       ++++   I+++l +Sr  V q++ + l++L+
  CCG93039.1 234 ALSHLDDISRKIVLYFFgiegegAKKRPTTWIAQKLRLSRKKVLQLLEKSLNQLK 288
                 899*********99999***9999999***************************9 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.4e-05     0.052       6      73 ..     156     219 ..     153     223 .. 0.86
   2 !    5.1   0.0    0.0069        25      26      44 ..     265     283 ..     259     287 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHHHHHHHXXXEETTXBSSSSTTXBSTTTXBXSSSXX CS
  Sigma70_r3   6 ikraqreLeqelgrePtpeEiAeeLglseekVrevleaarepvSldlpvgeeedtelgdlleddeaes 73 
                 ++++ r Leq l    t+eEi e  g s+ + +++l      +Sl+  + ++++t+l+dll   +++ 
  CCG93039.1 156 YRKIERFLEQGL----TVEEITELYGCSLHDMEKILHVYSGDLSLHFSALDDSETSLMDLLVYPDNTA 219
                 567777788888....*******************************************997774444 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0069
                 HHHHHTXXHHHHHHHHHHH CS
  Sigma70_r3  26 iAeeLglseekVrevleaa 44 
                 iA++L ls +kV+++le +
  CCG93039.1 265 IAQKLRLSRKKVLQLLEKS 283
                 9***************987 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   3.8e-06     0.014      11      64 ..      84     138 ..      75     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.8e-06
                 HHHHHCT-THH.HHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHH CS
  Sigma70_r2  11 rlarrllgsga.daeDlvQeaflrlwraverfdpergvsfsawllriarnaaidr 64 
                  +ar +l++ a +  D  + +++++++a+e+++ + +++f  +++  +rn++ ++
  CCG93039.1  84 QVARFYLPNLAdQWPDAENVGWIGILDALEKWNENFNIRFLDYAIHHVRNRVRNY 138
                 6788888888756789999*********************************998 PP

>> BsuBI_PstI_RE_N  BsuBI/PstI restriction endonuclease HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   6.8e-05      0.24       6      77 ..      69     148 ..      64     152 .. 0.89
   2 ?   -3.2   0.0       1.9     7e+03      14      45 ..     231     262 ..     222     271 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.8e-05
  BsuBI_PstI_RE_N   6 ealeilkalGlpkrqqaertalvlLallaikpedswaeatdeqalriteimafvkesy...............gkeyaentrEtiRr 77 
                      eal+ l+++ lp rqq +r       l ++  +d+w +a++  +++i ++++ ++e++                ++ya+  r t+Rr
       CCG93039.1  69 EALDWLAKISLPIRQQVARFY-----LPNL--ADQWPDAENVGWIGILDALEKWNENFnirfldyaihhvrnrVRNYANACRATVRR 148
                      888899999999999988854.....4444..489*****9******************************999************9 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.9
  BsuBI_PstI_RE_N  14 lGlpkrqqaertalvlLallaikpedswaeat 45 
                      l +    + + +  ++L++  i++e   +++t
       CCG93039.1 231 LYIALSHLDDISRKIVLYFFGIEGEGAKKRPT 262
                      55555566667777888888888888777776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.3   4.6e+03      27      42 ..     124     139 ..     122     147 .. 0.71
   2 ?    8.4   0.0   0.00053       1.9      14      32 ..     162     181 ..     150     181 .. 0.82
   3 ?   -0.1   0.0      0.25   9.1e+02      23      39 ..     265     281 ..     263     288 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
      HTH_23  27 LgvsrrTvyrwlkryr 42 
                 L+   ++v++ ++ y+
  CCG93039.1 124 LDYAIHHVRNRVRNYA 139
                 5566678888888873 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00053
      HTH_23  14 lae.GlsvreIAreLgvsrr 32 
                 ++e Gl+v+eI +++g+s +
  CCG93039.1 162 FLEqGLTVEEITELYGCSLH 181
                 4444**************75 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.25
      HTH_23  23 IAreLgvsrrTvyrwlk 39 
                 IA++L  sr  v + l+
  CCG93039.1 265 IAQKLRLSRKKVLQLLE 281
                 89999999988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      647  (0.0360868); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2198.46
//
Query:       CCG93040.1  [L=531]
Description: Chromosome (Plasmid) partitioning protein,ParB/Spo0J, contains ParB-like nuclease domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-24   86.1   0.2    2.8e-24   85.2   0.2    1.5  1  ParBc      ParB-like nuclease domain
  ------ inclusion threshold ------
      0.059   13.4   0.0       0.21   11.7   0.0    2.0  1  HTH_3      Helix-turn-helix
      0.062   13.4   0.0       0.14   12.2   0.0    1.6  1  RepB       RepB plasmid partitioning protein
      0.063   12.3   0.4       0.12   11.4   0.4    1.4  1  DUF2009    Protein of unknown function (DUF2009)
       0.07   13.0   0.1       0.07   13.0   0.1    3.0  3  HTH_ParB   HTH domain found in ParB protein
       0.52   10.3   2.9       0.73    9.8   1.4    2.1  2  eIF3_p135  Translation initiation factor eIF3 subunit 135


Domain annotation for each model (and alignments):
>> ParBc  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.2   9.4e-28   2.8e-24       3      90 .]      14     102 ..      12     102 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 9.4e-28
       ParBc   3 vplseirpnplqprkd.spekieelvasIkkkGllqPiivrktrqgryeiiaGerRlrAakrlglkevpvivleiddeeamalslieni 90 
                 +p+++i+ ++ +prk+ +++kieel+ sI+k Gl++Pi+vr+ ++g+yei++GerR+rA+k l+++ +++++ + d++ a+++++ieni
  CCG93040.1  14 IPIEKIKLSKQNPRKQfQEDKIEELAVSIEKIGLIHPILVRPIEDGYYEIVSGERRWRACKKLNKEFIECFIHPMDEKMALQIRIIENI 102
                 9***************************************************************************************7 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     7e-05      0.21       6      30 ..     120     144 ..     116     153 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7e-05
                 HHTTHHHHHHHHHHTSSHHHHHHHH CS
       HTH_3   6 kqlglsqeeLAeklGvsrstisriE 30 
                 +q g+++ eLA ++G  r +isr+ 
  CCG93040.1 120 LQGGMTIVELASVIGKGRDYISRMV 144
                 699*******************985 PP

>> RepB  RepB plasmid partitioning protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.8e-05      0.14       1      50 [.     103     153 ..     103     164 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.8e-05
        RepB   1 aradlsfierarfaarleerGvdreeiasalgldkqtvskmva.raipegi 50 
                 +r++l +ie+a+    l++ G++  e+as +g  ++++s+mv+  ++pe  
  CCG93040.1 103 QRQNLNPIEEAEGYKNLLQGGMTIVELASVIGKGRDYISRMVTlLSLPEAA 153
                 69****************************************998888765 PP

>> DUF2009  Protein of unknown function (DUF2009)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4     4e-05      0.12     128     189 ..     338     402 ..     316     422 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4e-05
     DUF2009 128 klvkpiktvesvleekealelledklielataeisaekksreeiqkeikekee....aieklakky 189
                    +pi t+++++++++al +l+ k i+ a + i +e k++ee ++e k+kee    ++++l++k 
  CCG93040.1 338 LARSPIGTIHKLVKKEDALFILQRKGITFAAKAI-KELKEKEEAKRERKKKEEflnlSCSSLISKV 402
                 45679************************99998.78899999********993333334444444 PP

>> HTH_ParB  HTH domain found in ParB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3      0.19   5.8e+02      26      42 ..      91     108 ..      88     114 .. 0.86
   2 ?   13.0   0.1   2.3e-05      0.07       2      50 ..     152     200 ..     151     202 .. 0.94
   3 ?   -1.2   0.0       0.6   1.8e+03      17      28 ..     368     379 ..     361     383 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.19
    HTH_ParB  26 e.elqlqlaekiieegLs 42 
                 +  lq+ + e i++++L+
  CCG93040.1  91 KmALQIRIIENIQRQNLN 108
                 4479*************8 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.3e-05
    HTH_ParB   2 evqeavsegkiseGHARaLlslkdeelqlqlaekiieegLsVRetEklv 50 
                   +ea+++gk+  + + ++++++ ++l+  +a ++i++ L+V ++ k+v
  CCG93040.1 152 AAKEAIISGKLAKRAGWYIARIPVPQLRAVVASEAIAKSLTVAQVAKMV 200
                 569*****************************************99987 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.6
    HTH_ParB  17 ARaLlslkdeel 28 
                 A+a++ lk++e+
  CCG93040.1 368 AKAIKELKEKEE 379
                 99******9976 PP

>> eIF3_p135  Translation initiation factor eIF3 subunit 135
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.5   4.6e+03      45      72 ..     186     213 ..     169     221 .. 0.67
   2 ?    9.8   1.4   0.00025      0.73      40     137 ..     314     408 ..     304     458 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.5
   eIF3_p135  45 rllvqEmiaRaaKhilrkylqsvealll 72 
                  ++ +  +a  aK +l+++l +++++++
  CCG93040.1 186 AIAKSLTVAQVAKMVLENFLLDLRKANF 213
                 4455555667777777777777666554 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00025
   eIF3_p135  40 lealkrllvqEmiaRaaKhilrkylqsvealllsaavshflnClLgseenskpkvsidellkklykkkkkkknkkkesewtkltpeslweqiekevka 137
                  +++ +ll +E+ ++ +K  l++yl+ ++  ++ + v +    ++ + +     +   +++k+l++k++ k+++kk++e+ +l+ +sl++++++++k+
  CCG93040.1 314 ERKWASLLAEELTIKDSKPHLHQYLARSPIGTIHKLVKKEDALFILQRKG---ITFAAKAIKELKEKEEAKRERKKKEEFLNLSCSSLISKVCDKIKT 408
                 4667889999************************9999987777644433...3445555666666666777888889**************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1242  (0.0692732); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.48
# Mc/sec: 3337.11
//
Query:       CCG93041.1  [L=300]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2410.11
//
Query:       CCG93042.1  [L=400]
Description: Type IV secretory pathway, VirB10 component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-25   88.5   0.0    7.6e-25   87.8   0.0    1.3  1  TrbI      Bacterial conjugation TrbI-like protein


Domain annotation for each model (and alignments):
>> TrbI  Bacterial conjugation TrbI-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0   4.3e-29   7.6e-25       3     186 ..     197     392 ..     197     393 .. 0.85

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 4.3e-29
                 -TT--EEEEE.SS-EESSS-EEEEEEE-S-EE-SSSS-EEE-TT-EEEEEEEEEESSS...SEEEEEEEEEEE-TT--EEESS----------HHHHHH CS
        TrbI   3 paGtvipavL.ltginsdlpgqvtaqvtedvysatgrallIpkgsrligeydsavakg...qeRvlvvwtrlilpdgksielggapgadadGraGlrGr 97 
                 p+G++i+a+L  ++++s++ ++v++ v  + y  +g+ ll + g rlig+       g   ++R++v+++++i++dg+s+ ++g  +  +dG+ G++G+
  CCG93042.1 197 PQGEMIEAALvNSAFSSNTDVDVVGAVWLPFY-FQGNLLL-EPGDRLIGTSAG----GtalRDRMMVHIDKIIFKDGRSLPIQGV-ALHTDGTEGIKGY 288
                 89********67789*****************.****999.********5333....34579********************555.89*********** PP

                 HHHHHHHHHSSS-SEEEEES---EEEE------------...................HHHHHHHHT-TT-BHHHHHHHHHHHHTTS--EEEE-TT-EE CS
        TrbI  98 vdnhfgkrfgaalllsllsgagellnaassssttsstgt...................qslaaavgegasqalsqvaqrilkraeniqptievpqGtkv 177
                    ++gk + + +l+++ +++  ++  +s     +   +                   q+++ +++ ++++a++q+++ + +++e+++p++ vp+Gt++
  CCG93042.1 289 RVSEYGKQLLGPILAAMGQAFLYAMEYQS----FNYYMSpygltpwglygqpayngakQAMMLGGMYAGTNAMQQIMNILAQDIEQYKPYVFVPAGTRF 383
                 65777999988888887777666443333....222222344789************99999999999******************************* PP

                 EEEESSEEE CS
        TrbI 178 tvvvnrdld 186
                 +v+ +  +d
  CCG93042.1 384 RVFLKSYMD 392
                 ***987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2783.60
//
Query:       CCG93043.1  [L=323]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.0   0.0       0.24   11.3   0.0    1.3  1  LPD15     Large polyvalent-protein-associated domain 15
       0.23   11.7   0.2       0.46   10.8   0.2    1.4  1  DUF2492   Protein of unknown function (DUF2492)


Domain annotation for each model (and alignments):
>> LPD15  Large polyvalent-protein-associated domain 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.7e-05      0.24      52      96 ..      46      91 ..      28      94 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.7e-05
       LPD15 52 reikkaDdkAvvvnGkysgnlgedmtleelaaairy.hyeniqnni 96
                 +i ++D   v++nGk+  +l+ed  l+ l + +r  h+e++q +i
  CCG93043.1 46 PQIAEEDAPPVIINGKKAEELSEDELLQFLQQKVRMiHQEDGQVEI 91
                578999***********99999988889999999853677777655 PP

>> DUF2492  Protein of unknown function (DUF2492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   5.1e-05      0.46      42      67 ..      62      87 ..      61      92 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.1e-05
     DUF2492 42 saedltadeLiefLlkkgKfvesedg 67
                +ae+l+ deL++fL++k +++++edg
  CCG93043.1 62 KAEELSEDELLQFLQQKVRMIHQEDG 87
                689*******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2368.24
//
Query:       CCG93044.1  [L=262]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1951.47
//
Query:       CCG93045.1  [L=685]
Description: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-55  185.8   0.0      1e-54  185.4   0.0    1.1  1  T2SSE          Type II/IV secretion system protein
  ------ inclusion threshold ------
      0.033   14.7   0.0      0.078   13.5   0.0    1.5  1  AAA_23         AAA domain
      0.034   13.9   0.0      0.053   13.2   0.0    1.3  1  AAA_30         AAA domain
      0.034   14.6   0.0      0.072   13.5   0.0    1.5  1  AAA            ATPase family associated with various cellular
      0.049   13.2   0.0      0.091   12.3   0.0    1.3  1  AAA_7          P-loop containing dynein motor region
      0.063   13.5   0.0       0.12   12.7   0.0    1.4  1  AAA_22         AAA domain
      0.077   12.8   0.0       0.13   12.0   0.0    1.3  1  ATP_bind_1     Conserved hypothetical ATP binding protein
      0.096   12.4   0.0        0.6    9.9   0.0    2.0  2  DEAD           DEAD/DEAH box helicase
        0.1   12.1   0.0        0.2   11.2   0.0    1.4  1  cobW           CobW/HypB/UreG, nucleotide-binding domain
        0.1   12.6   0.0       0.28   11.2   0.0    1.7  1  AAA_14         AAA domain
       0.12   12.8   0.0       0.24   11.9   0.0    1.4  1  ABC_tran       ABC transporter
       0.13   12.1   0.0       0.27   11.0   0.0    1.5  1  AAA_29         P-loop containing region of AAA domain
       0.13   11.1   0.0       0.23   10.3   0.0    1.3  1  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
       0.51   10.2   2.7         12    5.8   0.4    2.3  2  NTPase_1       NTPase


Domain annotation for each model (and alignments):
>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.4   0.0   8.2e-58     1e-54       3     272 ..     304     569 ..     302     570 .. 0.92

  Alignments for each domain:
  == domain 1  score: 185.4 bits;  conditional E-value: 8.2e-58
       T2SSE   3 illeallddekvsdihvekper.vkvrervdgielreveelekaalerlisriaalakldiseerplqdarlp....ekgvrlrvvllPvvag.ealvi 95 
                 i+++a+  d ++sdi +e++e+ v+vr+r+dg ++ e++ l++ + + l+ ri+   ++  +++ + qd++ +    +  ++ r++++      e+ +i
  CCG93045.1 304 IMSSAI--DMGASDISLEPKEHnVRVRFRIDG-DYYEQAPLSRLQYQILLDRIKLFGNMAADQKGIFQDGSSSyqykGIRYDQRYSIVIGQGMeEHTAI 399
                 677888..99**********************.9999999******************************99988544445555555444433589*** PP

       T2SSE  96 RkksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnakkakvtfadllra 194
                 R  s++  tlddl   ++ +  +  +l++    +g+++ +G+TgsGKtt+lya+l+ i +  ++i+tvE pvE +  +a q+++++k a++tfa++lr 
  CCG93045.1 400 RIFSSRIPTLDDLNLPPMEHSFLLWFLANG---QGMFVSTGPTGSGKTTTLYAMLQHISSPRKKIITVENPVEKHFPDAMQIEVREK-AGITFATALRG 494
                 *9999999**********************...******************************************************.*********** PP

       T2SSE 195 aLRlrPDrimvGEiRdketlei.lkAvnTGHlgslsTlHansaagalerLeq.lgaeveaaelkssilavvdivvrlvrk 272
                 ++R++PD+im+GEiRd e+++i + ++ TGHl+ +s++Ha +++g++er+ q +g  + + +++  + +v  i++rlv k
  CCG93045.1 495 IVRQDPDIIMIGEIRDMESARIaIDSALTGHLV-FSSIHATDPVGVIERMVQsFG--IDRLAVSYAMKLV--ISQRLVSK 569
                 *********************************.***************965277..9999999999999..99999876 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.1e-05     0.078      18      39 ..     429     450 ..     417     455 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.1e-05
      AAA_23  18 skgltlItGpNGaGKTTildAi 39 
                 ++g+++ tGp+G+GKTT l A+
  CCG93045.1 429 GQGMFVSTGPTGSGKTTTLYAM 450
                 7899999**********99886 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.2e-05     0.053      14      50 ..     426     462 ..     420     501 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.2e-05
      AAA_30  14 ltsgdrvavltGpAGtGKttalkalreaweaaggrvi 50 
                 l++g+ + v tGp G+GKtt+l a+ +++ +  +++i
  CCG93045.1 426 LANGQGMFVSTGPTGSGKTTTLYAMLQHISSPRKKII 462
                 6788899****************99998887766665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.6e-05     0.072       4      74 ..     436     515 ..     433     526 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.6e-05
                 ESSTTSSHHHHHHHHHHHHTHE.........EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS...TSEEEEEETGGGHHHHH CS
         AAA   4 yGppGtGKTllakavakelgve.........fleisgsellskyvgesekkirelfkeakeka...kpsilfiDEidalaksr 74 
                 +Gp G GKT++  a+ ++++++          +e   ++    ++ e  +k   +f++a +     +p i++i Ei  + ++r
  CCG93045.1 436 TGPTGSGKTTTLYAMLQHISSPrkkiitvenPVEKHFPDA---MQIEVREKAGITFATALRGIvrqDPDIIMIGEIRDMESAR 515
                 7*****************9744333332222333333333...4666666666666665333356569********9988777 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.1e-05     0.091      21      64 ..     418     461 ..     395     473 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.1e-05
       AAA_7  21 rysyllelllknkkpvllvGptGtGKtviikdllkkldkekyls 64 
                   s+ll  l + +  ++ +GptG+GKt+++  +l+++++ + ++
  CCG93045.1 418 EHSFLLWFLANGQGMFVSTGPTGSGKTTTLYAMLQHISSPRKKI 461
                 56889999999999999***************999998655444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.2e-05      0.12       4      47 ..     429     466 ..     427     497 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.2e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtl 47 
                 ++g+ v tG++G+GKTt+l  +l+          +r+++++v+ 
  CCG93045.1 429 GQGMFVSTGPTGSGKTTTLYAMLQHISS------PRKKIITVEN 466
                 7899999**********99888776532......3444445554 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0001      0.13       2      49 ..     436     482 ..     435     487 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdire 49 
                 +Gp GsGKtt   a+ +++++  +++ +v   P  +++p ++++++re
  CCG93045.1 436 TGPTGSGKTTTLYAMLQHISSPRKKIITVE-NPVEKHFPDAMQIEVRE 482
                 69******************9988877775.57777777777777776 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.7   8.9e+02      87     113 ..     237     267 ..     220     274 .. 0.73
   2 ?    9.9   0.0   0.00047       0.6      13      50 ..     429     461 ..     419     501 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.7
                 HHHHHHHHHTTCSEEEEEHHHHHHHH....H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
        DEAD  87 ardqlskldngvdivvgtpgrlddll....s 113
                 +++ +++l+ ++++v+  pg +++l+    +
  CCG93045.1 237 EDQLIEALKTKIQLVICSPGYFQKLFlrveK 267
                 34556778888*********99998755432 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00047
                 TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpka 50 
                 g+g ++  ++TGsGKT+  l ++lq++++    +++k+
  CCG93045.1 429 GQGMFVSTGPTGSGKTTT-LYAMLQHISS----PRKKI 461
                 556777889*******98.8899999954....44444 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015       0.2       4      37 ..     434     469 ..     432     491 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                 EEEESTTCCHHHHHHHHHCT--S..S-EEEEESS-S CS
        cobW   4 vltGflGsGKTtLlnhllenrag..lklavivNefg 37 
                 v tG+ GsGKTt l ++l++ ++  +k+  ++N + 
  CCG93045.1 434 VSTGPTGSGKTTTLYAMLQHISSprKKIITVENPVE 469
                 569***************665540055555555555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00022      0.28       6      86 ..     434     521 ..     430     529 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
      AAA_14   6 vitGaRrvGKTtllkqlikellvkkesilyinldderd......kkladpe..kllelileklkeekktylflDEiqevpewekalksl 86 
                 v tG+  +GKTt l+ ++++   ++++i+ ++   e+        + ++++  ++ ++++  +++ +  ++++ Ei  +++++ a+ s 
  CCG93045.1 434 VSTGPTGSGKTTTLYAMLQHISSPRKKIITVENPVEKHfpdamqIEVREKAgiTFATALRGIVRQ-DPDIIMIGEIRDMESARIAIDSA 521
                 569***************88887777777775444333233322222222244455555554444.78899999999998888877765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00019      0.24      17      51 ..     436     470 ..     427     548 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
                 EESTTSSHHHHHHHHTTSS-.-SEEEEEETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
    ABC_tran  17 vGenGaGKStLlkllagllk.pteGeilldgkdlke 51 
                 +G++G+GK+t l +++++ + p +  i+++ +++++
  CCG93045.1 436 TGPTGSGKTTTLYAMLQHISsPRKKIITVE-NPVEK 470
                 6*******9877776666550555555555.44444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021      0.27      22      43 ..     430     451 ..     423     461 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
      AAA_29  22 kgatlltGpsGsGKSTllDAiq 43 
                 +g+++ tGp+GsGK+T l A+ 
  CCG93045.1 430 QGMFVSTGPTGSGKTTTLYAML 451
                 457788**********998875 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00018      0.23      19      48 ..     434     463 ..     428     470 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
  TrwB_AAD_bind  19 livGttGsGKtqalekllrairargdraiv 48 
                    + +G tGsGKt++l ++l++i +  +++i 
     CCG93045.1 434 VSTGPTGSGKTTTLYAMLQHISSPRKKIIT 463
                    568******************999888875 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.4    0.0093        12       4      25 ..     435     456 ..     432     466 .. 0.83
   2 ?    4.7   0.1      0.02        26      73     119 ..     477     523 ..     453     565 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0093
                 EE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellks 25 
                  TGp G+GKtT +  +l+ ++s
  CCG93045.1 435 STGPTGSGKTTTLYAMLQHISS 456
                 59*********99998888765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.02
                 TEEE-HHHHHHHHHHHHHHHH.HHH-EEEE---STTGGG-HHHHHHHH CS
    NTPase_1  73 kyvvdvesfeelalealrkal.seadviviDEiGkmElkskkfkeave 119
                 ++ v+ e++   ++ alr  + +++d+i+i Ei  mE     + +a++
  CCG93045.1 477 QIEVR-EKAGITFATALRGIVrQDPDIIMIGEIRDMESARIAIDSALT 523
                 45555.3334444556666555899************87666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 4599.40
//
Query:       CCG93046.1  [L=308]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2292.51
//
Query:       CCG93047.1  [L=222]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1792.58
//
Query:       CCG93048.1  [L=198]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.19   11.8   0.0    1.2  1  DUF5529   Family of unknown function (DUF5529)


Domain annotation for each model (and alignments):
>> DUF5529  Family of unknown function (DUF5529)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     1e-05      0.19      59     130 ..      46     118 ..      38     145 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1e-05
     DUF5529  59 slhsstsaiaihhppgl.gslserpcpppwpsglasipyeplrffyspppgpeeaasplapgpatprlasasr 130
                 + ++ +++ ai+  p   g ls    p  wp  l  + ye l +++s     e   + l+p      + + ++
  CCG93048.1  46 TFDQFPNNKAIESIPVEgGWLSLLVHPTQWPKDLLQVYYEDLVILFSCVKSKEVQQNNLQPIALCQYVQTCKK 118
                 56777888899988875157899999***********************999999999999877666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1482.64
//
Query:       CCG93049.1  [L=237]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1527.20
//
Query:       CCG93050.1  [L=219]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1613.06
//
Query:       CCG93051.1  [L=709]
Description: Type IV secretory pathway, VirD4 component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-10   39.5   0.0    9.3e-07   28.0   0.0    3.2  3  T4SS-DNA_transf  Type IV secretory system Conjugative DNA tra
      6e-09   36.0   0.0    1.6e-08   34.5   0.0    1.8  1  TraG-D_C         TraM recognition site of TraD and TraG
    1.7e-07   30.5   0.0     0.0038   16.2   0.0    2.6  2  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
     0.0013   19.1   4.0     0.0028   18.1   4.0    1.4  1  GPS2_interact    G-protein pathway suppressor 2-interacting d
  ------ inclusion threshold ------
      0.024   14.7   2.3       0.91    9.6   0.0    2.6  3  DUF87            Helicase HerA, central domain
       0.07   13.5   0.1        3.3    8.1   0.0    2.7  2  AAA_16           AAA ATPase domain
       0.18   11.1   0.0       0.67    9.3   0.0    1.8  2  FtsK_SpoIIIE     FtsK/SpoIIIE family


Domain annotation for each model (and alignments):
>> T4SS-DNA_transf  Type IV secretory system Conjugative DNA transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.019        50      35      59 ..      64      88 ..      47      98 .. 0.76
   2 !    4.6   0.0    0.0045        11     124     192 ..     166     250 ..     116     270 .. 0.65
   3 !   28.0   0.0   3.6e-10   9.3e-07     223     386 ..     462     634 ..     450     657 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.019
  T4SS-DNA_transf 35 gg.llntdGdfehvlvvAptrsgKgv 59
                     g+ l  +d  f+h+++ +++++gK+ 
       CCG93051.1 64 GNpLTIKD-LFSHMSILGGSGAGKTR 88
                     55444555.69*************95 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0045
  T4SS-DNA_transf 124 etedilsvaslilkkkgkgkddffsntarqLlval..............iaevllkketetegqtlkvvramlsepnled..enk 192
                      e  d+ +  +  +++ + ++d+f+ ++ r+L++++              i+e++  +   +  + l ++r   +++ ++   e++
       CCG93051.1 166 ELADLMITLKQAVDDGKTSQDPFWDAAGRKLFNSIfqlhrelvmaarngIIEECPPPMSFPLLNLLVMDRGQPANQSQISsaESV 250
                      4455556666666666679***************988888866666666666666666666555555555555555444444444 PP

  == domain 3  score: 28.0 bits;  conditional E-value: 3.6e-10
  T4SS-DNA_transf 223 trsSvlgtakselalyadplvrnatS.ksdFdlrdlrrkkvsvyvivnpkdlevvapllrlf..fnmvvellkrklpnkderpke....vlflL 309
                      t++S+  t+   ++l ++p  ++++S k + ++ d+ ++  ++ + +n      +a+++ ++   + + ++l+rk+ + d+rp +    v+ l 
       CCG93051.1 462 TSGSIGMTVSVLTSLMTQPPFDRMVSpKGTLNFADIIDQGKILVLDMNFSRWRNAAKVASILlkLDFFRSVLSRKQLKIDGRPINqqrpVIYLC 555
                      55566666666666666666666666334666666666665565666665555555555544114568889999999999999877889***** PP

  T4SS-DNA_transf 310 DEfpsl...GkleileealatiagYgirltlIiQsisqlketYgkegaksilsnsavvivfaasndeetaeyiSkllGkt 386
                      DEf+++   G       + +  ++Y+  +++ +Qs++ l+++  k + ++il+n a +i + ++   et +y S+l G++
       CCG93051.1 556 DEFATVattGDWTGERGFFDKAREYKCGCIISFQSLAVLESRMIKSEIEAILTNTATIIFLRNPH-METNDYASRLFGEI 634
                      ***9882224555555566678********************************88888888888.************97 PP

>> TraG-D_C  TraM recognition site of TraD and TraG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   6.4e-12   1.6e-08       1      83 [.     550     635 ..     550     671 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 6.4e-12
    TraG-D_C   1 pvlfllDEfanl...gkipdleellstgrsrgislvlilQsiaqleelYgkegaetilgncdvklflgvndeetaeelSkllGekt 83 
                 pv  l+DEfa++   g +   +  ++++r+++  +++ +Qs+a le++  k + e+il n+++ +fl+  ++et+++ S+l+Ge +
  CCG93051.1 550 PVIYLCDEFATVattGDWTGERGFFDKAREYKCGCIISFQSLAVLESRMIKSEIEAILTNTATIIFLRNPHMETNDYASRLFGEIE 635
                 68899***99872225567778899*******************************************99*************965 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0     4e-05       0.1       8     122 ..      66     202 ..      63     242 .. 0.72
   2 !   16.2   0.0   1.5e-06    0.0038     236     326 ..     542     635 ..     458     648 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4e-05
  TrwB_AAD_bind   8 plpkeretqhilivGttGsGKt.....qalekllrairarg........draivlDltGafvsrfyd......egkdillnPlDaRsaaWsvfaei 84 
                    pl  ++  +h+ i+G+ G+GKt     q+le+l ra   r             ++D ++++++           +kd+ll   D+   a ++f++ 
     CCG93051.1  66 PLTIKDLFSHMSILGGSGAGKTrfvltQVLESLFRATDLRDskekaelkFSGFIMDGKCELTEMLLWlakkydREKDVLLFGPDHD-LALDPFNNP 160
                    677777789************733333667777776655556666666555689******99876444444446668888777765.455888877 PP

  TrwB_AAD_bind  85 keksdfaeiAaaliped......ggssdpfWaeaartvlaetlr 122
                    ++    +e+A+ +i+ +      ++s+dpfW  a+r++++++++
     CCG93051.1 161 DSLP--SELADLMITLKqavddgKTSQDPFWDAAGRKLFNSIFQ 202
                    6643..4666666654311111267899**********998765 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.5e-06
  TrwB_AAD_bind 236 slpesrerrlWfflDElpaLgrleel...ksllaegRkfGgavvlglqsiaqlrevYGedaaqsilslvntklilrvsdaetAeelsellGeqe 326
                     +p +++r + ++ DE++++    +      +  ++R++   +++ +qs a l+    + + ++il +++t ++lr +  et  ++s+l+Ge e
     CCG93051.1 542 GRPINQQRPVIYLCDEFATVATTGDWtgeRGFFDKAREYKCGCIISFQSLAVLESRMIKSEIEAILTNTATIIFLRNPHMETNDYASRLFGEIE 635
                    34447788888999999888777665221467899********************************************************755 PP

>> GPS2_interact  G-protein pathway suppressor 2-interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   4.0   1.1e-06    0.0028      21      77 ..     247     303 ..     236     311 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
  GPS2_interact  21 elvpsrlsKdeLlqnidkvDREiakveqqiskLkkkqkeleeeaakpkeeekpveps 77 
                    + +  r  K++  q ++k+ R i ++e+ i++ kkk k++  + ++ +e+e++ve +
     CCG93051.1 247 AESVLRENKEKVFQGLEKINRLINRIENLIQEWKKKIKDIYVANKNAPENENEVERE 303
                    3456899*********************************99988888888888765 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00035      0.91      16      40 ..      67      90 ..      58     111 .. 0.82
   2 ?    3.8   0.6      0.02        52     103     172 ..     228     310 ..     222     334 .. 0.68
   3 ?   -3.8   0.0       4.2   1.1e+04      52     209 ..     500     509 ..     481     525 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00035
       DUF87 16 ldlnklvtrHlAilgsTGsGKSntv 40
                l + k +  H+ ilg +G+GK+ +v
  CCG93051.1 67 LTI-KDLFSHMSILGGSGAGKTRFV 90
                556.44579*************998 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.02
       DUF87 103 ldllee.ddkpaaavqrsvleealdqakakeekeklssdepveklleelk............kekeelrklknqaiarlldkl 172
                 l+ll + +++pa++ q s  e++l++ k+k  ++  +++++++++++ ++            +++++++++  + ++rll+k+
  CCG93051.1 228 LNLLVMdRGQPANQSQISSAESVLRENKEKVFQGLEKINRLINRIENLIQewkkkikdiyvaNKNAPENENEVEREKRLLKKI 310
                 5666666899999999999******9998666777777777777777777776666566665333334444444444444333 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 4.2
       DUF87  52 gatililDpHGEYgkalekllsekvkvitpspsakdkelkinpwsldpeelldlleeddkpaaavqrsvleealdqakakeekeklssdepveklleel 150
                 +++il+lD+                                                                                          
  CCG93051.1 500 QGKILVLDM------------------------------------------------------------------------------------------ 508
                 455566655.......................................................................................... PP

       DUF87 151 kkekeelrklknqaiarlldkledllrkggsfsnsstdliallleklekegkitiidls 209
                                                                           +
  CCG93051.1 509 ----------------------------------------------------------N 509
                 ..........................................................4 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0013       3.3      26      90 ..      75     142 ..      66     274 .. 0.73
   2 ?    2.3   0.0     0.076   1.9e+02      40      94 ..     275     327 ..     266     380 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0013
      AAA_16  26 lvllsGesGvGKsslv.rellralekd..............ggiflrgkcdqlesaipysalaqalareellrqlldeae 90 
                  + + G sG GK++ v +++l++l ++               g+ + gkc+            ++l +  l ++ ++e++
  CCG93051.1  75 HMSILGGSGAGKTRFVlTQVLESLFRAtdlrdskekaelkfSGFIMDGKCELT----------EMLLW--LAKKYDREKD 142
                 67899*********999****99999977777777777755444477777766..........33322..3333333333 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.076
      AAA_16  40 lvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesael 94 
                 l++e+++ ++  ++++++ ++ ++e ++++   l++ +++e++l+ ++ e++s ++
  CCG93051.1 275 LIQEWKKKIK--DIYVANKNAPENENEVEREKrLLKKIEAEKILKYINGEQAS-KA 327
                 4556665555..58999999****9999998889***********99999544.44 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00026      0.67      27      61 ..      54      95 ..      30     102 .. 0.80
   2 ?   -1.7   0.1      0.58   1.5e+03      98     133 ..     258     293 ..     243     327 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00026
                  TS-EEEEEGGGS-........SEEEE--TTSSHHHHHHHHHH CS
  FtsK_SpoIIIE 27 sgnplvldlkkma.......shllvaGatgsGKStalntLil 61
                  ++  + +d+++++       sh+ ++G++g GK+ ++ t +l
    CCG93051.1 54 TEPQELTDESGNPltikdlfSHMSILGGSGAGKTRFVLTQVL 95
                  55567789999999999999***************9987655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.58
                   -B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHH CS
  FtsK_SpoIIIE  98 vatdperalraleeLvkemeeryalfreagvrsiaa 133
                   v ++ e++ r+++ ++++++e ++++++  v++ +a
    CCG93051.1 258 VFQGLEKINRLINRIENLIQEWKKKIKDIYVANKNA 293
                   555666666666777777776666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       965  (0.0538234); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 4705.45
//
Query:       CCG93052.1  [L=130]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.013   15.2   0.7      0.015   15.0   0.0    1.4  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus


Domain annotation for each model (and alignments):
>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   8.2e-07     0.015     124     176 ..      13      65 ..       3      70 .. 0.83
   2 ?   -3.4   0.2      0.38   6.9e+03      95      95 ..      84      84 ..      72     100 .. 0.51

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.2e-07
  Cation_ATPase_C 124 snkllllaillslllqvlivyvpglnavfgtaplsleewlialllalvvllvd 176
                       n  l ++ ll+l l++ ++ v g + +f+t +l+++e+l a+++al+++l++
       CCG93052.1  13 NNNNLHIIGLLMLCLICGVMTVTGDHLLFSTDKLNFWELLEAFPIALLYILLH 65 
                      4555777778888899999999999999*********************9986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.38
  Cation_ATPase_C 95 F 95
                     F
       CCG93052.1 84 F 84
                     1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 960.41
//
Query:       CCG93053.1  [L=82]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 583.43
//
Query:       CCG93054.1  [L=210]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1631.45
//
Query:       CCG93055.1  [L=622]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.89    9.7   8.2       0.41   10.8   4.9    2.0  2  SAM_KSR1      SAM like domain present in kinase suppressor RA
        2.5    7.9  12.8        2.8    7.8   7.4    2.6  2  SKA2          Spindle and kinetochore-associated protein 2
        4.5    6.5   5.1        1.1    8.5   1.7    1.6  2  FAM76         FAM76 protein
        6.2    6.7  10.3       0.43   10.5   4.9    1.8  2  CortBP2       Cortactin-binding protein-2


Domain annotation for each model (and alignments):
>> SAM_KSR1  SAM like domain present in kinase suppressor RAS 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.42   1.9e+03      81     107 ..      69      95 ..      64     114 .. 0.76
   2 ?   10.8   4.9   9.1e-05      0.41       2      83 ..     513     593 ..     512     611 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.42
    SAM_KSR1  81 etleailnkklsleelLkmseeelkql 107
                 ++++ i+n+++ ++++L+ ++e ++++
  CCG93055.1  69 DAMNYIVNRLQDIQNILRDNDEHVQHI 95 
                 577889999999999999999888765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 9.1e-05
    SAM_KSR1   2 eiiqslidisaekLeglRtqCatsadltqqeiRaLEsKlvkyfSeqllaksklaereranelqkypelkqWLrvvglsqetl 83 
                 +iiq+l ++ a+ ++ lR qC+    l   +i  LE  +   + +q +  +kl+++++    ++y+ l++ L+++++ +e +
  CCG93055.1 513 NIIQKLTQLQAD-IKSLREQCQQNYILAIPQISQLEVIVTNQINNQQQFLEKLKNNIENYRQTRYQLLQDRLHIIDMMKEKA 593
                 689999999985.89**************************************************************88764 PP

>> SKA2  Spindle and kinetochore-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.029   1.3e+02      17      57 ..      70     112 ..      64     120 .. 0.62
   2 ?    7.8   7.4   0.00062       2.8      34      94 ..     503     569 ..     488     585 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.029
        SKA2  17 dLdyvqhrLekefqqsypdna...eNpvkLlerlkkvkeelqaL 57 
                  ++y+ +rL+ ++q++++dn    ++  ++++  k++ ++l++L
  CCG93055.1  70 AMNYIVNRLQ-DIQNILRDNDehvQHIDQMISGTKQLSQQLASL 112
                 5677777774.677777777655555555555555555555554 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00062
        SKA2  34 pdna..eNpvkLlerlkkvkeelqaLkeqcee..llaekk..elidkirttlvanrellqqLqasae 94 
                  d +  ++ v ++++l+++++++++L+eqc++  +la  +  +l   + +++++++++l++L++++e
  CCG93055.1 503 LDVQlyKDTVNIIQKLTQLQADIKSLREQCQQnyILAIPQisQLEVIVTNQINNQQQFLEKLKNNIE 569
                 4444567889********************9755666555457777788999999999999999884 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.34   1.5e+03     270     296 ..      87     113 ..      71     117 .. 0.72
   2 ?    8.5   1.7   0.00025       1.1     214     297 ..     511     597 ..     428     600 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.34
       FAM76 270 lekeakekieklekkirellkevaels 296
                  + e+ ++i+++ +  ++l +++a+l 
  CCG93055.1  87 DNDEHVQHIDQMISGTKQLSQQLASLA 113
                 456777788888888888888888775 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00025
       FAM76 214 ssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeakeki.eklekk..irellkevaelsk 297
                 + + + ++tqL+ +i+sl+ q +q     + +  ++  + +++++++++  eklk++ ++++++  + l+++  i +++ke+a+l+ 
  CCG93055.1 511 TVNIIQKLTQLQADIKSLREQCQQNYILAIPQISQLEVIVTNQINNQQQFLEKLKNNIENYRQTRyQLLQDRlhIIDMMKEKAALEA 597
                 334455789**************998888888899999999*************999888876550555654226789999999975 PP

>> CortBP2  Cortactin-binding protein-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.89     4e+03      78     105 ..      87     113 ..      75     124 .. 0.53
   2 ?   10.5   4.9   9.5e-05      0.43      44     131 ..     507     591 ..     484     597 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.89
     CortBP2  78 lyekqlaeLekliekqreaqermleqLa 105
                  +++ +++++++i+  ++ +++++  La
  CCG93055.1  87 DNDEHVQHIDQMISGTKQLSQQLA-SLA 113
                 334555556666666655555443.344 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 9.5e-05
     CortBP2  44 rygskvnlsdplqALqRDselaksketsesevkklyekqlaeLekliekqreaqermleqLaaaekrhrkvleeLeeekrkheedtaq 131
                  y+ +vn+ + l+ Lq D ++++++++++  +      q+++Le ++++q + q++ le+L++  +++r++  +L +++ +  +++++
  CCG93055.1 507 LYKDTVNIIQKLTQLQADIKSLREQCQQNYILA---IPQISQLEVIVTNQINNQQQFLEKLKNNIENYRQTRYQLLQDRLHIIDMMKE 591
                 466677778888889999999888888886555...58**************************************999777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1394  (0.0777511); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 4004.80
//
Query:       CCG93056.1  [L=140]
Description: hypothetical protein MFUM_90051 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 938.03
//
Query:       CCG93057.1  [L=808]
Description: Outer membrane receptor protein, mostly Fe transport (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5917.53
//
Query:       CCG93058.1  [L=48]
Description: hypothetical protein MFUM_900002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 365.39
//
Query:       CCG93059.1  [L=64]
Description: hypothetical protein MFUM_910002 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 471.88
//
Query:       CCG93060.1  [L=102]
Description: hypothetical protein MFUM_910003 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-17   63.8   0.0    1.7e-17   63.7   0.0    1.0  1  SRAP      SOS response associated peptidase (SRAP)


Domain annotation for each model (and alignments):
>> SRAP  SOS response associated peptidase (SRAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   9.6e-22   1.7e-17     132     218 ..       3      87 ..       1      88 [. 0.93

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 9.6e-22
        SRAP 132 llalAGLydvweeegeeeklytytiiTteankqlaelHdRmPviLeeeelraWLdp.rkedskelqellkpaeeeelevypVskeVnk 218
                 ++ +AGL+d+we+++  + + ++tii tea+ +l+ +H RmPvi+++ +++ WL   ++++ ++  +llkp+++ ++++++V  +Vn+
  CCG93060.1   3 VFGFAGLWDRWEQDS--RIIESTTIIVTEACIALQAIHGRMPVIIDPLHYDLWLGIeKDRNLQDYLDLLKPWNG-KIAFWRVRCAVNR 87 
                 789********7777..9************************************9977888889999*****99.*********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 708.34
//
Query:       CCG93061.1  [L=44]
Description: hypothetical protein MFUM_910004 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       140  (0.00780858); expected 358.6 (0.02)
Passed bias filter:                      127  (0.0070835); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 341.73
//
Query:       CCG93062.1  [L=733]
Description: Large exoprotein involved in heme utilization or adhesion [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 4797.03
//
Query:       CCG93063.1  [L=42]
Description: hypothetical protein MFUM_910006 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       176  (0.0098165); expected 358.6 (0.02)
Passed bias filter:                      130  (0.00725082); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 325.06
//
Query:       CCG93064.1  [L=224]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-64  217.3   0.1    2.1e-64  217.1   0.1    1.0  1  SRAP             SOS response associated peptidase (SRAP)
  ------ inclusion threshold ------
       0.12   12.0   0.2       0.23   11.0   0.1    1.5  2  Glyco_hydr_30_2  O-Glycosyl hydrolase family 30


Domain annotation for each model (and alignments):
>> SRAP  SOS response associated peptidase (SRAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.1   0.1   2.3e-68   2.1e-64       1     218 [.       1     208 [.       1     209 [. 0.94

  Alignments for each domain:
  == domain 1  score: 217.1 bits;  conditional E-value: 2.3e-68
        SRAP   1 MCgRyaltlapeelaeeleaeeedkelrpsynvaptqkvpvvvaeeeeeeeeeeerklqamkwGlvPswakdpkklglktiNaRsetlaekplfrsalk 99 
                 MCgR++l  +++ +++ ++ e+  + ++p+yn+ap++ ++v++++ e+       r+   m+wGl+P+wa+++ k+  ++iNaR+et+++kp+fr+ ++
  CCG93064.1   1 MCGRFSLRASQRVIQSVFKVEKVPD-FSPRYNIAPSSPILVIRQDVEK-------REALFMRWGLIPHWANEA-KTDWSMINARAETVHSKPTFRDSFR 90 
                 *******************977777.****************955554.......7899***********999.889********************** PP

        SRAP 100 kkRcvvpadGFYEWkkkg.kekqPyfikrkdgkllalAGLydvweeegeeeklytytiiTteankqlaelHdRmPviLeeeelraWLdp.rkedskelq 196
                 k+Rc++padGFYEW+k++ ++k+P++++  + +++ +AGL+d+we++g  + + ++tii tea+++l+++H+RmPvi+++ +++ WL   ++++ ++  
  CCG93064.1  91 KRRCLIPADGFYEWQKEEkNKKIPWYVTLPSVEVFGFAGLWDRWEKDG--KLIESTTIIVTEACPELRKIHERMPVIIDPLHYDLWLGIeKDRNLQDCL 187
                 **************76663788**********************9999..9************************************997788888999 PP

        SRAP 197 ellkpaeeeelevypVskeVnk 218
                 +llkp+++ ++++++Vs++Vn+
  CCG93064.1 188 DLLKPWNG-KIAFWRVSTAVNR 208
                 9*****99.***********96 PP

>> Glyco_hydr_30_2  O-Glycosyl hydrolase family 30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.25   2.3e+03     253     294 ..       8      49 ..       4      81 .. 0.70
   2 ?   11.0   0.1   2.6e-05      0.23      79     106 ..      83     110 ..      65     118 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.25
                      TTSTT--TT-TTEEEEEEE--TT-SSSHHHHHHHHHHHHHHH CS
  Glyco_hydr_30_2 253 kasanyvanlknvekviaghsyfttspakelvekrkelaaki 294
                      +as++ + ++ +vekv      +   p++ ++ +r++++++ 
       CCG93064.1   8 RASQRVIQSVFKVEKVPDFSPRYNIAPSSPILVIRQDVEKRE 49 
                      567777777777888777777788888888888888887664 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 2.6e-05
                      S--SSSTT----SB-TTS-B-TTSSHHH CS
  Glyco_hydr_30_2  79 seitdewrreecfleadGkydwtkqeGq 106
                         +d++r+  c++ adG y+w+k+e +
       CCG93064.1  83 PTFRDSFRKRRCLIPADGFYEWQKEEKN 110
                      4678********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1718.41
//
Query:       CCG93065.1  [L=197]
Description: TPR repeats containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-12   48.5   0.2    7.6e-08   32.9   0.0    2.3  2  TPR_16    Tetratricopeptide repeat
    4.6e-10   39.5   5.3     0.0011   19.5   0.3    4.4  5  TPR_6     Tetratricopeptide repeat
    5.2e-08   33.3   1.4    5.4e-05   23.6   0.1    2.6  2  TPR_19    Tetratricopeptide repeat
    2.3e-07   30.7   5.7    2.9e-06   27.1   5.7    2.2  1  TPR_21    Tetratricopeptide repeat-like domain
      4e-07   30.2   0.7    5.7e-06   26.5   0.1    2.3  2  TPR_12    Tetratricopeptide repeat
    5.3e-05   23.7   1.4       0.11   13.3   0.9    3.3  3  TPR_14    Tetratricopeptide repeat
      8e-05   22.4   1.6       0.21   11.3   0.1    2.1  2  YfiO      Outer membrane lipoprotein
    0.00013   21.9   1.5       0.43   10.8   0.0    3.5  3  TPR_2     Tetratricopeptide repeat
     0.0035   16.8   6.8       0.86    8.9   6.8    2.8  1  TPR_MalT  MalT-like TPR region
     0.0039   17.3   1.2       0.46   10.8   0.2    3.0  2  TPR_8     Tetratricopeptide repeat
     0.0044   17.2   1.9      0.013   15.7   0.5    2.1  2  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
     0.0054   16.2   2.0     0.0081   15.6   2.0    1.2  1  SNAP      Soluble NSF attachment protein, SNAP
     0.0066   16.2   1.0       0.31   10.9   0.1    3.2  3  TPR_1     Tetratricopeptide repeat
     0.0079   16.3   1.5        3.9    7.7   0.6    3.0  3  TPR_9     Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   15.8   0.9       0.28   11.3   0.2    3.1  3  TPR_7     Tetratricopeptide repeat
      0.052   12.7   1.4      0.079   12.1   1.4    1.2  1  DUF3422   Protein of unknown function (DUF3422)
      0.067   13.2   0.0       0.12   12.4   0.0    1.3  1  BCHF      2-vinyl bacteriochlorophyllide hydratase (BCHF)


Domain annotation for each model (and alignments):
>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   7.2e-11   7.6e-08       2      64 ..      79     141 ..      78     145 .. 0.93
   2 !   13.6   0.1   7.8e-05     0.083       1      40 [.     152     191 ..     152     191 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 7.2e-11
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 + a  +++ g   +A+  ++ +l+ +p++P+ a A+l+ g+++  qg  + A+ ly++ l+  
  CCG93065.1  79 QIAGNLYEKGAISEALSTFQFFLEHFPGHPLEAGAMLGAGECLESQGQTQQAVLLYQRILEKK 141
                 568899****************************************************99765 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 7.8e-05
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllll 40 
                 l la+++++ ++y  A ++le +l ++++sP+a +A++ll
  CCG93065.1 152 LRLAQIRIQKKEYGPAKELLEKFLSQNARSPFANQAQMLL 191
                 67999********************************997 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       5.6   5.9e+03       4      18 ..      33      46 ..      33      59 .. 0.55
   2 ?   -2.0   0.0       7.4   7.8e+03       4      15 ..      61      72 ..      60      74 .. 0.76
   3 !    9.0   0.0    0.0023       2.4       6      32 ..      81     106 ..      76     107 .. 0.83
   4 !   19.5   0.3     1e-06    0.0011       2      29 ..     113     140 ..     113     140 .. 0.96
   5 !   10.1   0.2     0.001       1.1       2      31 ..     150     179 ..     149     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 5.6
                HHHHHHHHHHHHHHH CS
       TPR_6  4 yklalsyrklgdtdk 18
                ykla+ + k+ +++k
  CCG93065.1 33 YKLAMEHSKA-KWEK 46
                5566555555.4444 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 7.4
                HHHHHHHHHHHH CS
       TPR_6  4 yklalsyrklgd 15
                +k+a+++++ ++
  CCG93065.1 61 LKIAKAHLSNKQ 72
                789999987655 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYPd 32 
                 ++ +y+k+   ++Al +++ +++ +P+
  CCG93065.1  81 AGNLYEKG-AISEALSTFQFFLEHFPG 106
                 35777777.*****************7 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 1e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlike 29 
                 A++ ++++++++g+t++A+ +++r++++
  CCG93065.1 113 AMLGAGECLESQGQTQQAVLLYQRILEK 140
                 89***********************986 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYP 31 
                 A ++la+ +++ +++  A+e+le+++++  
  CCG93065.1 150 AILRLAQIRIQKKEYGPAKELLEKFLSQNA 179
                 789********88************99865 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   5.1e-08   5.4e-05       1      64 [.      84     149 ..      84     152 .. 0.92
   2 !    9.7   0.3    0.0012       1.2      26      57 ..     149     180 ..     147     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 5.1e-08
      TPR_19   1 llaegdyaeAlalleqalqedpk...naearllLAeallalgqldeAealLdalpeedpddaryasL 64 
                 l++ g   eAl+ ++  l++ p+    a a l+  e+l ++gq+++A  l ++++e++   ++y++L
  CCG93065.1  84 LYEKGAISEALSTFQFFLEHFPGhplEAGAMLGAGECLESQGQTQQAVLLYQRILEKKDT-EAYRAL 149
                 67889999************99988899999999************************98.888876 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0012
      TPR_19  26 earllLAeallalgqldeAealLdalpeedpd 57 
                  a l+LA++ ++ +++  A++lL++ + +++ 
  CCG93065.1 149 LAILRLAQIRIQKKEYGPAKELLEKFLSQNAR 180
                 5889********************98888876 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   5.7   2.8e-09   2.9e-06      15     139 ..      23     174 ..      16     190 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.8e-09
      TPR_21  15 vvlalvglaGwqgwqdyqeeqaeeAsalYqqlqeave...........................akdaakakeaaeeladeyggtaYaalaaLllAkaa 86 
                 ++l  +gl+G++   ++ +++ e+    Yq+ +++ e                           +++  +a   ++ + ++++g +  a a L + +  
  CCG93065.1  23 FLLLSLGLFGYKLAMEHSKAKWEKVILSYQAAKTNEEklkiakahlsnkqaavwilqiagnlyeKGAISEALSTFQFFLEHFPGHPLEAGAMLGAGECL 121
                 566777888888888888888888888888887744455566666666677777777777777678888999999999********************* PP

      TPR_21  87 veagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeak 139
                  ++g++++A   ++++lek++ e+++ala lRLa++ +++k+y  A ++Le+ 
  CCG93065.1 122 ESQGQTQQAVLLYQRILEKKDTEAYRALAILRLAQIRIQKKEYGPAKELLEKF 174
                 **********************************************9999764 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   5.4e-09   5.7e-06       5      73 ..      77     139 ..      71     143 .. 0.91
   2 ?    1.7   0.1       0.3   3.2e+02       5      30 ..     150     175 ..     146     189 .. 0.64

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 5.4e-09
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 +l ++a  l++ g   eAl+ ++  le +     p hpl+a ++ + g++++ +g++++A+ l+++ l+
  CCG93065.1  77 IL-QIAGNLYEKGAISEALSTFQFFLEHF-----PGHPLEAGAMLGAGECLESQGQTQQAVLLYQRILE 139
                 23.799***********************.....88******************************997 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.3
      TPR_12   5 alnnlaavlrrlgrydeAlellekal 30 
                 a  +la++  + ++y  A ellek l
  CCG93065.1 150 AILRLAQIRIQKKEYGPAKELLEKFL 175
                 33367777777777776666666655 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0         1   1.1e+03       5      37 ..      78     111 ..      71     117 .. 0.72
   2 !   13.3   0.9   0.00011      0.11       5      43 ..     115     151 ..     109     156 .. 0.82
   3 !    8.2   0.2    0.0049       5.1       3      38 ..     150     185 ..     148     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 1
      TPR_14   5 lalaeallalGdpdeAiallrralalaPdda.ea 37 
                 l++a  l++ G   eA+  ++  l+++P+++ ea
  CCG93065.1  78 LQIAGNLYEKGAISEALSTFQFFLEHFPGHPlEA 111
                 4556667778888889999999999999876355 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00011
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 l ++e l+ +G++++A+ l++r+l+   +d ea+++la 
  CCG93065.1 115 LGAGECLESQGQTQQAVLLYQRILE--KKDTEAYRALAI 151
                 5567889****************99..778888887774 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0049
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeaw 38 
                 a l+la++  +  ++  A +ll++ l+++  ++ a+
  CCG93065.1 150 AILRLAQIRIQKKEYGPAKELLEKFLSQNARSPFAN 185
                 6799***********************998877554 PP

>> YfiO  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1    0.0002      0.21      20      82 ..      50     114 ..      39     153 .. 0.80
   2 !   10.8   0.3   0.00027      0.29      10      48 ..     153     191 ..     138     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
                 -HHHHHHHHHHHHHH..STTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SSSTTHHHHH CS
        YfiO  20 dyaeAikklealdsr..yPfspyaeqaqldliyAyykdadyaealasaerFlrlyPthknvdyvl 82 
                 +y++A+++ e+l+    ++  ++a+   l+++   y+++ ++eal + + Fl+ +P+h+ +  ++
  CCG93065.1  50 SYQAAKTNEEKLKIAkaHLSNKQAAVWILQIAGNLYEKGAISEALSTFQFFLEHFPGHPLEAGAM 114
                 5778888888776444499999999999******************************9776555 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00027
                 HHHHHHHHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHH CS
        YfiO  10 ekgqealqkgdyaeAikklealdsryPfspyaeqaqldl 48 
                 + +q  +qk++y+ A++ le+  s+   sp+a+qaq+ l
  CCG93065.1 153 RLAQIRIQKKEYGPAKELLEKFLSQNARSPFANQAQMLL 191
                 4588899*****************************976 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.98     1e+03       9      25 ..      82      98 ..      75     107 .. 0.73
   2 !   10.8   0.0    0.0004      0.43       4      30 ..     114     140 ..     111     143 .. 0.87
   3 !    7.2   0.3    0.0057         6       2      31 ..     149     178 ..     148     180 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.98
       TPR_2  9 layyklgdyeeAleafe 25
                  +y++g   eAl  f+
  CCG93065.1 82 GNLYEKGAISEALSTFQ 98
                56888999999998887 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0004
       TPR_2   4 lynlGlayyklgdyeeAleafekAlel 30 
                     G++++ +g+ ++A+ ++++ le 
  CCG93065.1 114 MLGAGECLESQGQTQQAVLLYQRILEK 140
                 55679******************9986 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0057
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleld 31 
                  a  +l+++ +++++y  A+e++ek l+ +
  CCG93065.1 149 LAILRLAQIRIQKKEYGPAKELLEKFLSQN 178
                 56789********************99765 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   6.8   0.00082      0.86      59     200 ..      53     187 ..      50     194 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00082
    TPR_MalT  59 AlqalqeaeklarqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleql.e 156
                 A ++ +e  k+a+++ s ++a++ +lq+a  l ++G   eAl t++  l++ + + l++    g +l   ++ l  +++ ++A    q+    le+   
  CCG93065.1  53 AAKTNEEKLKIAKAHLSNKQAAVWILQIAGNLYEKGAISEALSTFQFFLEHFPGHPLEA----GAMLGA-GECLESQGQTQQAVLLYQRI---LEKKdT 143
                 56666677788888888888888888888888888999999999999999888888884....333333.88888888888877777754...444324 PP

    TPR_MalT 157 peaaldayvllarialaqGdleeAetllekaeelaresnfhvdw 200
                 ++ ++ a + la+i++++ +   A++llek   + ++s+f +++
  CCG93065.1 144 EAYRALAILRLAQIRIQKKEYGPAKELLEKFLSQNARSPFANQA 187
                 46666677778888888888888888888888888878876554 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1      0.07        74       3      29 ..     113     139 ..     111     139 .. 0.84
   2 !   10.8   0.2   0.00043      0.46       4      30 ..     151     177 ..     148     180 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekale 29 
                 a++  g +++++g+ ++A+  y++ le
  CCG93065.1 113 AMLGAGECLESQGQTQQAVLLYQRILE 139
                 56667999***********99998775 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00043
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekalel 30 
                  ++l++i +++++y  Ake +ek l+ 
  CCG93065.1 151 ILRLAQIRIQKKEYGPAKELLEKFLSQ 177
                 579********************9985 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.63   6.7e+02      28      39 ..      62      73 ..      38     115 .. 0.64
   2 !   15.7   0.5   1.2e-05     0.013       2      56 ..     124     182 ..     123     191 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.63
                HHHHHHHHTT-H CS
      ANAPC3 28 llAlclylngqy 39
                  A+++++n+q 
  CCG93065.1 62 KIAKAHLSNKQA 73
                235555555543 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.2e-05
                 TT-HHHHHHHHHHHH....HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-H CS
      ANAPC3   2 qnnyknAiflaerlla...aetespedayllAlclylngqykrAyellrka.klnsksl 56 
                 q++++ A++l+ r+l+   +e++++ +++ lA+   + ++y  A ell+k+  +n +s+
  CCG93065.1 124 QGQTQQAVLLYQRILEkkdTEAYRALAILRLAQIRIQKKEYGPAKELLEKFlSQNARSP 182
                 899************6556778888888889********************66666665 PP

>> SNAP  Soluble NSF attachment protein, SNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   2.0   7.7e-06    0.0081      54     188 ..      53     181 ..      41     187 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.7e-06
                 HHHHHHHHHHHHHH.TT-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-H CS
        SNAP  54 AgeaflkaAecqek.lkekdeaanayveAakcykkvspeeAvealekAieiytekgrfrraAklkkeiaelyekelgdlekAieaYekAaelyeqeeak 151
                 A+++ ++  ++ +  l++k+ a   ++ A++ y+k  ++eA ++++   e++   g   +a+ +    +e++e++ g++++A+  Y++     e+ + +
  CCG93065.1  53 AAKTNEEKLKIAKAhLSNKQAAVWILQIAGNLYEKGAISEALSTFQFFLEHFP--GHPLEAGAML-GAGECLESQ-GQTQQAVLLYQRI---LEKKDTE 144
                 5555555555555547888888888999*******************999996..6677776665.58*******.**********985...5688888 PP

                 HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS- CS
        SNAP 152 alankcllkvAelsaelekyekAieiyekvakkslen 188
                 a    + l++A++  ++++y  A e+ ek  ++ +++
  CCG93065.1 145 AYRALAILRLAQIRIQKKEYGPAKELLEKFLSQNARS 181
                 8888999*******************99988877665 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.3   3.5e+03      12      24 ..      85      97 ..      82     106 .. 0.66
   2 !   10.9   0.1    0.0003      0.31       8      29 ..     118     139 ..     113     143 .. 0.92
   3 ?    2.2   0.1      0.17   1.8e+02       3      26 ..     150     173 ..     148     178 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.3
                HHTT-HHHHHHHH CS
       TPR_1 12 fklgkydeAleyy 24
                +++g   eAl  +
  CCG93065.1 85 YEKGAISEALSTF 97
                5556666666655 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0003
                 HHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekALe 29 
                 G ++ ++g+ ++A+  y++ Le
  CCG93065.1 118 GECLESQGQTQQAVLLYQRILE 139
                 89*****************998 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyek 26 
                 a  +l+++  ++++y  A e  ek
  CCG93065.1 150 AILRLAQIRIQKKEYGPAKELLEK 173
                 6679************99999887 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.019        20      39      61 ..      84     106 ..      52     115 .. 0.87
   2 ?    2.4   0.4      0.16   1.7e+02      34      65 ..     116     147 ..     104     155 .. 0.71
   3 !    7.7   0.6    0.0037       3.9      29      72 ..     148     191 ..     119     195 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.019
       TPR_9  39 laqlGclsaAladLeaylalapd 61 
                 l++ G++s+Al  ++ +l++ p 
  CCG93065.1  84 LYEKGAISEALSTFQFFLEHFPG 106
                 6889***************9884 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.16
       TPR_9  34 dRGlllaqlGclsaAladLeaylalapdapda 65 
                   G +l+ +G++++A+   ++ l++ +  + +
  CCG93065.1 116 GAGECLESQGQTQQAVLLYQRILEKKDTEAYR 147
                 56889999999999999999999887644333 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0037
       TPR_9  29 peerrdRGlllaqlGclsaAladLeaylalapdapdaeairaqL 72 
                 +  ++  ++++ q   +  A + Le +l+++   p a +++++L
  CCG93065.1 148 ALAILRLAQIRIQKKEYGPAKELLEKFLSQNARSPFANQAQMLL 191
                 445677899999****************7776666666666555 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.6   1.7e+03      13      31 ..      42      58 ..      39      65 .. 0.74
   2 ?   11.3   0.2   0.00026      0.28       6      30 ..     118     140 ..     113     146 .. 0.79
   3 ?    0.6   0.0      0.69   7.3e+02       1      29 [.     150     179 ..     150     183 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.6
       TPR_7 13 GdyeeAielyeqsLaltkd 31
                 ++e+ i  y++  a t++
  CCG93065.1 42 AKWEKVILSYQA--AKTNE 58
                578999988888..66655 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00026
       TPR_7   6 arlysrlGdyeeAielyeqsLaltk 30 
                 +++ +++G++++A+ ly++ L+  k
  CCG93065.1 118 GECLESQGQTQQAVLLYQRILE--K 140
                 88999**************554..3 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.69
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsL.alt 29 
                 a+l+La+++ +  +y  A el+e+ L + +
  CCG93065.1 150 AILRLAQIRIQKKEYGPAKELLEKFLsQNA 179
                 678999999999999888888888665555 PP

>> DUF3422  Protein of unknown function (DUF3422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.4   7.5e-05     0.079     181     245 ..     126     193 ..     120     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.5e-05
     DUF3422 181 serraGrlvqRlle...iEtYRllallgLpvArelspelaeleerLaaltsalaeseeeedeqellee 245
                 + ++a  l qR+le    E+YR+la+l+L   r + +e   + e L++  s+ a+s  ++++q lle 
  CCG93065.1 126 QTQQAVLLYQRILEkkdTEAYRALAILRLAQIRIQKKEYGPAKELLEKFLSQNARSPFANQAQMLLEM 193
                 678888999****86668************************************97666666666664 PP

>> BCHF  2-vinyl bacteriochlorophyllide hydratase (BCHF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011      0.12      37      89 ..      51     104 ..      44     111 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
        BCHF  37 llylatg.egfalvtvsvllktlllvlilitGaifekevfgkylfakeffweDv 89 
                 +  ++t+ e++ ++++ +  k + ++++ i G ++ek    + l + +ff+e +
  CCG93065.1  51 YQAAKTNeEKLKIAKAHLSNKQAAVWILQIAGNLYEKGAISEALSTFQFFLEHF 104
                 333344458999******************************9*999**99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1371.31
//
Query:       CCG93066.1  [L=406]
Description: aspartate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-51  173.5   0.5    9.4e-51  172.7   0.5    1.4  1  AA_kinase  Amino acid kinase family
      4e-21   74.5   1.3    1.2e-11   44.1   0.1    2.9  2  ACT        ACT domain
    5.2e-20   71.0   3.0    1.3e-14   53.7   0.2    3.2  3  ACT_7      ACT domain
  ------ inclusion threshold ------
       0.11   13.5   0.2        3.5    8.7   0.0    2.9  3  LytR_C     LytR cell envelope-related transcriptional attenua


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.7   0.5   2.1e-54   9.4e-51       2     239 ..       3     228 ..       2     230 .. 0.96

  Alignments for each domain:
  == domain 1  score: 172.7 bits;  conditional E-value: 2.1e-54
                 EEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--.HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHG CS
   AA_kinase   2 rvVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGg.gsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglp 99 
                 ++V K GG+s+++ e+  ++++a  ia++ ++g++l+vV+++ +++td+ll+l+s+l++++++              ++d l+s ge+ + all+ +l+
  CCG93066.1   3 LLVQKYGGTSVGSVER--IKNVAGRIAEFYRQGHDLIVVVSAmSGVTDQLLQLASQLHPEPSE-------------REMDVLLSTGEQTTIALLSMALH 86 
                 589*************..************************99******************9.............689*******************9 PP

                 EEEE-GGGTCEECCCE.....HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTE...EEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTT CS
   AA_kinase 100 avglsaaaldateagr...degsdgnvesvdaeaieelleagvvpvltgfigldeege...lgrgssDtiaallAealgAdkliiltdVdGVydadpkk 192
                 a +++a +l+  +ag+    +++ +++ +++ + i+ell++++v+v++gf+g ++eg+   lgrg+sD +a +l + ++A+++ i+tdV+GVy+adp++
  CCG93066.1  87 ALKIPAVSLTGAQAGIvtdGKHTRAKILNISPKRIKELLQQRNVVVVAGFQGQNVEGHittLGRGGSDLTAIALSAVFHAECCQIYTDVEGVYTADPRI 185
                 9999999999999999988889999************************************************************************** PP

                 CCTTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHHHCTT-EEEE CS
   AA_kinase 193 vpdarllpeisvdeaeesaselatgGmkvkhpaalaaarrggipvvI 239
                 vp+ar+++eis+de++e    +a  G kv+  + +++a++ ++p  +
  CCG93066.1 186 VPTARKIDEISYDELLE----MAASGSKVMQARSVEFAKKFKVPFEV 228
                 *****************....******************98888655 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.1   2.7e-15   1.2e-11       4      58 ..     266     320 ..     263     326 .. 0.88
   2 !   28.3   0.2   2.5e-10   1.1e-06       2      58 ..     344     395 ..     343     399 .. 0.89

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 2.7e-15
                 EEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHH CS
         ACT   4 rvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleev 58 
                 ++gvpD+PG++a+vf+ la++ iN+d+i q  s+ ++ +i+f+v++ + + +  +
  CCG93066.1 266 ILGVPDKPGIAAKVFCRLAEAEINVDMIVQNISDHGLTDITFTVHKNFLKKALVA 320
                 569********************************99999999999887766555 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 2.5e-10
                 EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHH CS
         ACT   2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleev 58 
                 v+ +g++ + G++a++f+ la++giN+ +i++++      +i++++++ + ++++++
  CCG93066.1 344 VVGIGMRSHSGVAAKLFSSLAEAGINVQMISTSEI-----KISIIIDEKEGKRAAQL 395
                 7899*******************************.....78888888887777765 PP

>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       0.3   1.3e+03      10      50 ..      38      80 ..      36      82 .. 0.74
   2 !   16.1   0.0   1.6e-06    0.0072       3      48 ..     258     300 ..     256     322 .. 0.86
   3 !   53.7   0.2     3e-18   1.3e-14       3      65 .]     336     398 ..     334     398 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.3
                EE-S-.---SS--HHHHHHHHH....HTTT---EEEE-SS-EEEE CS
       ACT_7 10 svvgsglpfdvtGivaklaspL....aeagIsifqiStyrtdyiL 50
                 vv++ + + vt  + +las L    +e    ++ ++ ++t + L
  CCG93066.1 38 VVVSA-MSG-VTDQLLQLASQLhpepSEREMDVLLSTGEQTTIAL 80
                45666.877.99999999999988887877777777777776655 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.6e-06
                 EEEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE-SS-EE CS
       ACT_7   3 edgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiStyrtdy 48 
                 e+  +k+++ g     d +Gi+ak++  Laea I++ +i   ++d+
  CCG93066.1 258 EPSQAKVTILGV-P--DKPGIAAKVFCRLAEAEINVDMIVQNISDH 300
                 667899999999.3..8*******************9998777776 PP

  == domain 3  score: 53.7 bits;  conditional E-value: 3e-18
                 EEEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE.-SS-EEEEEEGGGHHHHHHHHHH CS
       ACT_7   3 edgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiS.tyrtdyiLVpeedlekAveaLhe 65 
                  +g++klsvvg g+++ ++G++akl+s LaeagI++ +iS ++++++i+++e++ ++A +  h+
  CCG93066.1 336 TEGIAKLSVVGIGMRS-HSGVAAKLFSSLAEAGINVQMIStSEIKISIIIDEKEGKRAAQLVHD 398
                 689*************.*****************************************998885 PP

>> LytR_C  LytR cell envelope-related transcriptional attenuator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.9   8.7e+03      18      82 ..     120     135 ..      96     158 .. 0.65
   2 ?    1.1   0.0      0.19   8.4e+02       3      47 ..     263     307 ..     261     345 .. 0.64
   3 ?    8.7   0.0   0.00078       3.5      12      65 ..     352     403 ..     350     405 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.9
      LytR_C  18 rvadaLeerGftvgevgnagnadeettivyreaaaaaakalaaalglgelqedsvkdasvtvvlG 82 
                 r++++L++r                                                  v+vv G
  CCG93066.1 120 RIKELLQQRN-------------------------------------------------VVVVAG 135
                 3333333333.................................................444443 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.19
      LytR_C   3 kVeVlNgtgvsGlAarvadaLeerGftvgevg.nagnadee..ttivy 47 
                 kV++l   +++G+Aa+v   L+e+  +v  +  n ++      t i++
  CCG93066.1 263 KVTILGVPDKPGIAAKVFCRLAEAEINVDMIVqNISD---HglTDITF 307
                 77777778899******99999999999884423333...24566666 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00078
      LytR_C  12 vsGlAarvadaLeerGftvgevgnagnadeettivy.reaaaaaakalaaalglg 65 
                  sG+Aa++ + L+e+G +v  +++++ +    +i++ ++++++aa+ + +a++l+
  CCG93066.1 352 HSGVAAKLFSSLAEAGINVQMISTSEIK---ISIIIdEKEGKRAAQLVHDAFQLN 403
                 58*******************6666555...666665444446999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2917.18
//
Query:       CCG93067.1  [L=546]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-32  112.4  14.0      3e-31  108.9  14.0    2.4  1  BBP2      Putative beta-barrel porin-2, OmpL-like. bbp2
  ------ inclusion threshold ------
       0.17   11.5   4.4      0.062   12.9   1.3    1.8  2  KdgM      Oligogalacturonate-specific porin protein (KdgM)


Domain annotation for each model (and alignments):
>> BBP2  Putative beta-barrel porin-2, OmpL-like. bbp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9  14.0   3.3e-35     3e-31       2     320 ..      79     501 ..      78     512 .. 0.77

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 3.3e-35
        BBP2   2 vtisGyvdvyytynfnnpqnntn............................dpggtfadrn..nefalnlaklklekeadk.....vgfridlqfGtda 65 
                 +++sGyv++ ytynf    +  +                             p ++ +d      f+ n++k++lek+  +     +gfr+d++fG+da
  CCG93067.1  79 IKLSGYVEASYTYNFIAAPSFSQiptvfanpaisglhgpaaahpyvpaypaLPLRFTTDGIpgGAFNFNQLKVALEKPLTDenkwqAGFRVDMIFGQDA 177
                 899************8875555579***********************99755555555557899*************99899**************** PP

        BBP2  66 nytqaagstnsg..........sstknnlkalpqAyvsakipvs.kgltvdaGkfaThiGyEsidskdNfnYtrsylfnng.PfihtGvranytitdkl 152
                    +                  s  + +   l+qAyv++k+p++ k l++ +G+fa++iG+E++  + Nfn++ ++lfnn  Pf+  G  + y+++d++
  CCG93067.1 178 ALGEPDA----VmgigntfntgSGFNSSGIFLEQAYVQFKAPIGdKSLEIHIGQFASPIGLEVMERPANFNFSYGILFNNFePFTMVGGEVFYKFNDNW 272
                 7655442....12233556666778888899**********998357*********************************99***************** PP

        BBP2 153 slslgvlng.w.............................daieddsngtpalggqvtyspddklslnlntlygndnpdgr.................. 203
                 ++  g++ng w                             d                     +k +l lnt++ + +p+g                   
  CCG93067.1 273 TTRWGLTNGgWnvsragypyfgytnnminsgegivlfnmwD-------------------YVSKDKLFLNTFGYAFAPNGVnppgfgtspngsyvgayd 352
                 *********98666555554444433333333333333330...................333444666666666665444566666776666666666 PP

        BBP2 204 ..............................fktqnrfiydlvltykltdkltlilnadygeeegqknt..........gggksaewygaalyakyqftd 262
                                               ++++  f y lv +++     + i+++   ++ +              g   s++++g+a+y  y+f++
  CCG93067.1 353 iggdivpsaynnnglfmefndfgtwipkfvKDQKLEFAYELVGGFSNRIGPSGIAQLGAPTQTS---LsifprnyplyGFDGSTSFFGVAIYQIYKFNK 448
                 6666666666666667777777777777777777777788888887777555555555544333...13479999999********************* PP

        BBP2 263 kfalgvRgEyfddkdggaqdsigstatgngskvwalTltptykptenltvRpElryde 320
                  f+++ R  y + +++  q   + t+   + +++++T+   +++++n+++R+E r d 
  CCG93067.1 449 VFSMAWREQYDHANRN--Q---IFTNMLFPMDIYSVTVDWRFDLADNFMIRIENRADY 501
                 *******777777774..5...89999999*************************995 PP

>> KdgM  Oligogalacturonate-specific porin protein (KdgM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.56     5e+03      74     102 ..     265     293 ..     249     303 .. 0.63
   2 ?   12.9   1.3   6.9e-06     0.062     104     161 ..     442     498 ..     430     507 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.56
                 -EESSSSEEEEEEEEEEEESS-EEE--EE CS
        KdgM  74 lfKvtdklaiqPGfvlesgsststykpYl 102
                  +K++d+ + + G      +    + pY+
  CCG93067.1 265 FYKFNDNWTTRWGLTNGGWNVSRAGYPYF 293
                 46666666666665444444444555555 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.9e-06
                 EEEESSSSEEEEEEEEEEEEE-------.------EEEEEEEEEEEETTTEEEEEEEE CS
        KdgM 104 gryklteslslavRyRyeykrkssnisddektnddtyrldtyidykildefkltyele 161
                   yk+++ +s+a R  y+++++    ++    + d y +++ + + + d+f + +e  
  CCG93067.1 442 QIYKFNKVFSMAWREQYDHANRNQIFTNMLFPM-DIYSVTVDWRFDLADNFMIRIENR 498
                 569******************998777755555.*******************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3846.74
//
Query:       CCG93068.1  [L=529]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-44  152.0   5.6    4.2e-44  151.1   5.6    1.4  1  BBP2      Putative beta-barrel porin-2, OmpL-like. bbp2


Domain annotation for each model (and alignments):
>> BBP2  Putative beta-barrel porin-2, OmpL-like. bbp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.1   5.6   2.3e-48   4.2e-44       2     332 ..      82     504 ..      81     529 .] 0.84

  Alignments for each domain:
  == domain 1  score: 151.1 bits;  conditional E-value: 2.3e-48
        BBP2   2 vtisGyvdvyytynf.nnpqnntn...........................dpggtfadrn.......nefalnlaklklekeadk.....vgfridlq 60 
                 + +sGyvd+ ytynf n p  n                                                f++n++kl+lek+  +     +gfr+dl+
  CCG93068.1  82 IVLSGYVDASYTYNFiNAPAFNRVpgfvpppgyvgptntagfaqgypaipgR--------EpvdaipgGGFNMNAFKLALEKPLTEenrwqAGFRADLI 172
                 568************444555555*************888888777764431........123334569**************99999*********** PP

        BBP2  61 fGtdanytqaa.gstnsg......sstknnlkalpqAyvsakipvskgltvdaGkfaThiGyEsidskdNfnYtrsylfnng.PfihtGvranytitdk 151
                  G+da ++ a+   t  g      +s ++++++l+qAyv + +p+++gl++++Gkf+ + GyE++  + N+ +t ++lf n  P + tG++a y  +d+
  CCG93068.1 173 VGQDA-VVGAPdAITGLGvpssswYSFNTSSFWLEQAYVIFRAPIGNGLDIKIGKFVDPAGYEVVERPVNLDFTYGLLFANLlPTTLTGLQAIYRWDDQ 270
                 *****.4445534444449999999************************************************************************** PP

        BBP2 152 lslslgvlng...w...........daieddsngtpalggqvty.spddklslnlntlygndnpdgr.........................fktqnrf 210
                 ++  +g+ +g   +           +++  ++  ++ l  + ++ +  ++ +l  + +yg    +                           f+++n f
  CCG93068.1 271 WTSRFGIADGgfnVsrggmeyfgyiNNMI-NNSDAYLLFLNSQWeAKGKNATLSGTLMYGFNGVNPPgfgaspingvaqpygiaqgirgegpFNQNNAF 368
                 **********7651555555555556655.6666888889999977788888888888999885544677999*******************6655555 PP

        BBP2 211 i.ydlvltyklt...dkltlilnadygeeegqknt...........gggksaewygaalyakyqftdkfalgvRgEyfddkdggaqdsigstatgngsk 294
                 +  dl  ++ +    dkl l+++++ g+ +++ +             ++  ++wygaa+++kyq+td ++++ R+ +++   +      + ++ +++++
  CCG93068.1 369 FlGDLWGSWAPKfarDKLLLGFEFTGGFYNNNVTVvpgaisglpvdLSSGPSNWYGAAVHMKYQITDIISIAQRADWVESGWN-----SILAGHNAPTD 462
                 549*******863337**************88766**********9899999**************************99994.....6999******* PP

        BBP2 295 vwalTltptykptenltvRpElrydessddt....fvdgsgk 332
                 +wa+T+t+ +++++n+++R E+r d+++++     f++++ +
  CCG93068.1 463 IWAYTATLAFDLADNFMIRLEYRMDWGRGVMgyygFPFQNPT 504
                 **************************9998444345555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1191  (0.0664287); expected 358.6 (0.02)
Passed bias filter:                     1046  (0.0583412); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:00.50
# Mc/sec: 3176.97
//
Query:       CCG93069.1  [L=533]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.8e-35  120.3   6.9    1.6e-34  119.6   6.9    1.3  1  BBP2           Putative beta-barrel porin-2, OmpL-like. bbp2
  ------ inclusion threshold ------
       0.24   11.0   0.1       0.36   10.4   0.1    1.2  1  Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (


Domain annotation for each model (and alignments):
>> BBP2  Putative beta-barrel porin-2, OmpL-like. bbp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   6.9   1.8e-38   1.6e-34       2     323 ..      70     491 ..      69     517 .. 0.86

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 1.8e-38
        BBP2   2 vtisGyvdvyytynf.nnpqnntn....................dpggtfadrn..nefalnlaklklekeadk.....vgfridlqfGtdanytqaag 72 
                 +++sGyvd+ y ynf n p  +                      +p ++++d      f+ln++k+ le+e  k       fr+dl+ G+da   +   
  CCG93069.1  70 IKLSGYVDASYDYNFfNAPAFGSLpsfasqtingkptfrpavptAPLRYADDGIpgGGFNLNQLKVVLERELSKenkldGAFRFDLMLGQDAGLGVPDA 168
                 799***********736666665599**************776655555555558899*********************************97655442 PP

        BBP2  73 stnsg........sstknnlkalpqAyvsakipvskg..ltvdaGkfaThiGyEsidskdNfnYtrsylfnng.PfihtGvranytitdklslslgvln 160
                     g           +     ++qAyv ++ip +++  +++ +Gkf  +iG+E++  + N+n++ ++ fnn  Pf   G ++ y+i+ ++ + +g+++
  CCG93069.1 169 VE--GlgtansttFGLNIGTIFVEQAYVAFQIPAGENhrVEIHLGKFEAPIGFEVLERPGNLNFSYGLFFNNVePFALVGSQIYYAINASWRVRGGLVD 265
                 22..12244321211122235689********987652277789******************************************************* PP

        BBP2 161 g...w...........daieddsngtpalggqvty.spddklslnlntlygndnpdgr..............................fktqnrfiydl 214
                 g   +           d++  +  +t+ +++++ y s ++kl  ++  lyg   ++                                +  +   + + 
  CCG93069.1 266 GgfnTsrggfpyfgflDNMV-NRLPTYLVTFNLDYeSTNKKLLNTFALLYGFNGTNPPgfgtspsaaldypgayangdiipgpynnngTYMELNDYGSW 363
                 *8662666667777778888.9999****************9999999999999655567789999****************99888888888888999 PP

        BBP2 215 vltykltdkltlilnadygeeegqknt........................gggksaewygaalyakyqftdkfalgvRgEyfddkdggaqdsigstat 289
                 + ++ ++dkl +++++  g+ +++                           g    ++w+g+ ly  y+f++ f+l +R  y++ + +         ++
  CCG93069.1 364 IPSFVPGDKLMFSFELVGGFYNHAVAPsgitalgasqqqllgifppfpfslGYDGPTNWFGVGLYQVYKFNNYFSLNLREQYLQASWN-----SYLEGF 457
                 99*******************98875599**********************999999****************************995.....356777 PP

        BBP2 290 gngskvwalTltptykptenltvRpElrydessd 323
                   ++++w+ Tlt+ +++++nl+vR+E r+d +++
  CCG93069.1 458 VFPANIWETTLTLRFDLADNLMVRIEGRTDIGNN 491
                 7889*************************95444 PP

>> Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1     4e-05      0.36      17      71 ..       5      59 ..       1      62 [. 0.94

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Mt_ATP-synt_B 17 tlvalcfigflilvakslgpsikefldkriekiqeelnqsrnlkeealkerieqe 71
                   ++++l+f+++l+l++ + g++ +e+  + + ++++  +q  +l + +l++++eqe
     CCG93069.1  5 YVLVLSFVFLLLLAYPTIGKASEEENASSMGEKKDTTQQTEALAVPQLEKILEQE 59
                   57899***********************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3898.39
//
Query:       CCG93070.1  [L=461]
Description: DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-70  234.8   0.1    6.6e-70  234.2   0.1    1.3  1  Sigma54_activat  Sigma-54 interaction domain
    6.9e-22   77.7   0.1    1.7e-21   76.4   0.1    1.7  1  Response_reg     Response regulator receiver domain
    4.2e-21   75.5   0.0    1.3e-20   73.9   0.0    1.9  1  Sigma54_activ_2  Sigma-54 interaction domain
    1.1e-13   50.7   0.5    2.3e-13   49.7   0.5    1.6  1  HTH_8            Bacterial regulatory protein, Fis family
    1.3e-05   25.3   0.0    3.1e-05   24.0   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
    3.9e-05   24.1   0.0    9.6e-05   22.8   0.0    1.7  1  AAA              ATPase family associated with various cellul
    0.00038   20.0   0.1    0.00098   18.7   0.1    1.7  1  HTH_50           Helix-turn-helix domain
    0.00044   19.7   0.1       0.18   11.1   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0093   15.2   0.1      0.021   14.0   0.1    1.5  1  TIP49            TIP49 P-loop domain
  ------ inclusion threshold ------
      0.025   14.4   0.0      0.058   13.2   0.0    1.6  1  HTH_30           PucR C-terminal helix-turn-helix domain
      0.076   12.7   0.0       0.17   11.6   0.0    1.5  1  AAA_30           AAA domain


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.2   0.1   4.1e-73   6.6e-70       1     167 [.     145     311 ..     145     312 .. 0.99

  Alignments for each domain:
  == domain 1  score: 234.2 bits;  conditional E-value: 4.1e-73
                      ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTT CS
  Sigma54_activat   1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadg 94 
                      +ig+s+ +ke++e+ik+va ++++vli+GesGtGKel a+aih+ s+r++ pfv v caa++++lleseLFGhekGaFtGA +++ G+fe+a  
       CCG93070.1 145 MIGSSQVMKEVFEKIKQVALSKATVLIEGESGTGKELAAHAIHQLSPRRNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEACR 238
                      689******************************************************************************************* PP

                      SEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEE CS
  Sigma54_activat  95 GtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnviei 167
                      Gt+fLDeige++l +Q+kLlrvl e++++rvGs+k i+vdvr+iaatn++le++veegkfredL++rlnv++i
       CCG93070.1 239 GTIFLDEIGEIDLPTQVKLLRVLGEKSIQRVGSNKIIPVDVRVIAATNRNLEKMVEEGKFREDLFFRLNVVRI 311
                      ***********************************************************************98 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.1   1.1e-24   1.7e-21       2     108 ..       9     113 ..       8     117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.1e-24
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEE CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddfl 98 
                   liv+D++  r++l  +l  e+y ev ea+d   a+++l++e +d++l Di++ + +G+++l++++e +  + +i++ta+++ e+avea+k ga+d++
    CCG93070.1   9 LIVEDEKRTRSGLVMALA-EDY-EVYEASDVLTAINILENEPIDIVLADIRLGKESGFDILTKVKELPVPPLCIFMTAYGSVENAVEAIKKGAYDYI 103
                   9****************9.99*.*********************************************9999************************* PP

                   ESSG-HHHHH CS
  Response_reg  99 sKpfdpeeLl 108
                   +Kp+d e+L 
    CCG93070.1 104 TKPVDLEKLE 113
                   *******996 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0     8e-24   1.3e-20       1     138 []     146     316 ..     146     316 .. 0.91

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 8e-24
                      X---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.......................HHHHHHTTTS CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.......................ldlleqakgg 71 
                      +g+s++++e +e+++q+a sk+ v++ Ge G+gkel A ++h+ s +   +fvv ++a+l                           +e+a  g
       CCG93070.1 146 IGSSQVMKEVFEKIKQVALSKATVLIEGESGTGKELAAHAIHQLSPRRNFPFVVVHCAALSpqlleselfghekgaftgaierrIGRFEEACRG 239
                      79********************************************************866366677777777777777666555556669*** PP

                      EEEEEE-TT--HHHHHHHHHHHHH..........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  72 tLylkdiadlskaeqkeLlellak..........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      t++l +i +++   q +Ll +l +            + ++r+++++ ++le+++e+g+f e L+++L  +r+ +PpL
       CCG93070.1 240 TIFLDEIGEIDLPTQVKLLRVLGEksiqrvgsnkIIPVDVRVIAATNRNLEKMVEEGKFREDLFFRLNVVRITMPPL 316
                      ************************9******9653399**************************************9 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.5   1.4e-16   2.3e-13       2      42 .]     411     451 ..     410     451 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.4e-16
                 HHHHHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHT CS
       HTH_8   2 leevEkelIeaALertgGnkskAArlLGisRrtLyrKLkkY 42 
                 l+e Ek+lI +AL+ ++G k+ AA+ LGisR+tL rK+k++
  CCG93070.1 411 LKEAEKRLILDALKFCHGKKTLAAKKLGISRKTLQRKMKQF 451
                 789************************************97 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.9e-08   3.1e-05       2     123 ..     169     288 ..     168     301 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.9e-08
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE-...-TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvql...trdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerr 93 
                 vl+ G++GtgK   a  + ++    n ++++v +   + ++ e++l+g+ + +  g  +++ + + +a+r   +++lDE+ +++  ++ +Ll++l e+ 
  CCG93070.1 169 VLIEGESGTGKELAAHAIHQLSprrNFPFVVVHCaalSPQLLESELFGHEKGAfTGAIERRIGRFEEACR--GTIFLDEIGEIDLPTQVKLLRVLGEKS 265
                 899********99999999999987777777754111567778888888887688888888888887777..589************************ PP

                 EE..-SSSEEE---......-EEEEEESS- CS
       AAA_5  94 llleeggelvkaknddllerfrviatanpl 123
                 ++   +++ + ++       +rvia++n++
  CCG93070.1 266 IQRVGSNKIIPVD-------VRVIAATNRN 288
                 **99999999886.......9*******87 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   5.9e-08   9.6e-05       1     114 [.     169     292 ..     169     307 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.9e-08
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS.....STTHHHHHHHHHHHHH...HHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk.....yvgesekkirelfkea...kekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 vl+ G  GtGK l+a+a+ + +   +++f+ + ++ l  +     ++g+ +  + + +++     e+a    +f+DEi ++               + +
  CCG93070.1 169 VLIEGESGTGKELAAHAIHQLSprrNFPFVVVHCAALSPQlleseLFGHEKGAFTGAIERRigrFEEACRGTIFLDEIGEIDLPT-----------QVK 256
                 6899****************9866679999999988886677777666666666666655223222333489*********7666...........899 PP

                 HHHHHHHTTTS........SSTEEEEEEESS..GGG CS
         AAA  89 Llteldgvkkk........eskvivigatnr..pdk 114
                 Ll++l + + +          +v vi+atnr  +++
  CCG93070.1 257 LLRVLGEKSIQrvgsnkiiPVDVRVIAATNRnlEKM 292
                 9999999999999999999777********963333 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1     6e-07   0.00098       9      49 ..     412     453 ..     410     454 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6e-07
      HTH_50   9 eefErelikkayek.YpStRklAkrLGvShtaianklrkYgI 49 
                 +e E+ li +a++  ++   ++Ak+LG+S  +  +k++++++
  CCG93070.1 412 KEAEKRLILDALKFcHGKKTLAAKKLGISRKTLQRKMKQFQL 453
                 678999999999862666667799****************96 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0039       6.3      21      48 ..     165     192 ..     144     206 .. 0.85
   2 !   11.1   0.0   0.00011      0.18      94     158 ..     225     287 ..     216     296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0039
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlpsllpp 48 
                    +  +l+ G +G+GK + a+++++l p+
    CCG93070.1 165 SKATVLIEGESGTGKELAAHAIHQLSPR 192
                   566899*****************99886 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00011
  Mg_chelatase  94 gskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNp 158
                     + + G    a +G +fLDE+ e++  +   L + l +++  i+r  ++   p ++ ++aa+N 
    CCG93070.1 225 AIERRIGRFEEACRGTIFLDEIGEIDLPTQVKLLRVLGEKS--IQRVGSNKIIPVDVRVIAATNR 287
                   45667788999***************988877777787765..6899999999*********995 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.3e-05     0.021       8      86 ..     127     203 ..     121     231 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX CS
       TIP49   8 ikgLGldedgeaekeeeglvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelg.edvpfvalsgs 86 
                 ++ L l+ +++ ++  e ++G  +    +  + e ik+  l+  +vL+ G+sgtGk   a ai +    ++ pfv++  +
  CCG93070.1 127 VENLQLKRQLNLKYGLEKMIGSSQV---MKEVFEKIKQVALSKATVLIEGESGTGKELAAHAIHQLSPrRNFPFVVVHCA 203
                 6667777778888888888887765...44578899******99*************99999987544688999987654 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.6e-05     0.058      11      40 ..     426     454 ..     419     461 .] 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.6e-05
                 TTT-HHHHHHHHTS-HHHHHHHHHHHHHHH CS
      HTH_30  11 nggnisatAkaLhvHrnTlryRLrrieell 40 
                 ++g ++ +Ak+L+++r Tl+  +++  +ll
  CCG93070.1 426 CHGKKTLAAKKLGISRKTLQRKMKQF-QLL 454
                 8999******************9998.455 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0001      0.17      10     115 ..     159     264 ..     156     273 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
      AAA_30  10 vealltsgdrvavltGpAGtGKttalkalreaweaag.....grviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtk 103
                 +++++ s++ +++++G  GtGK  a  a+ ++  +++      + ++l+p+   ++  ++e g+ +  i++ + r ++    + +  +  DE+g +d  
  CCG93070.1 159 IKQVALSKA-TVLIEGESGTGKELAAHAIHQLSPRRNfpfvvVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEE----ACRGTIFLDEIGEIDLP 252
                 678888886.99**********************99945433333345555555556667777788888888877664....45578899999999999 PP

      AAA_30 104 qlaallkaaeka 115
                 +  +ll+ + ++
  CCG93070.1 253 TQVKLLRVLGEK 264
                 999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3022.04
//
Query:       CCG93071.1  [L=389]
Description: Signal transduction histidine kinase with PAS domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-23   81.0   0.2    1.4e-22   80.3   0.2    1.4  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    1.9e-11   44.2   0.0    5.1e-11   42.8   0.0    1.7  1  PAS_4         PAS fold
    6.4e-11   42.4   0.1    5.8e-10   39.4   0.0    2.7  3  PAS_9         PAS domain
    3.4e-10   39.9   0.0    1.3e-09   38.0   0.0    2.0  2  PAS           PAS fold
      9e-10   38.5   0.2    2.1e-09   37.3   0.2    1.6  1  HisKA         His Kinase A (phospho-acceptor) domain
    9.7e-09   35.1   0.1    1.7e-08   34.3   0.1    1.4  1  HATPase_c_5   GHKL domain
    2.1e-08   34.0   0.0    6.5e-08   32.4   0.0    1.9  1  PAS_8         PAS domain
    0.00018   21.3   0.0    0.00034   20.5   0.0    1.4  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
     0.0021   18.2   0.3      0.065   13.4   0.1    2.6  2  PAS_7         PAS fold
     0.0083   16.7   0.0       0.76   10.4   0.0    2.4  2  PAS_10        PAS domain
  ------ inclusion threshold ------
      0.012   14.4   0.2      0.017   13.9   0.2    1.3  1  BshC          Bacillithiol biosynthesis BshC
      0.071   13.6   0.0       0.16   12.5   0.0    1.6  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
      0.074   11.8   1.4       0.12   11.1   1.4    1.2  1  MAP65_ASE1    Microtubule associated protein (MAP65/ASE1 fami
        0.1   12.6   0.0       0.18   11.7   0.0    1.4  1  HATPase_c_2   Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.2   1.1e-25   1.4e-22       2     110 ..     271     374 ..     270     376 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 1.1e-25
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTT CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgr 100
                 d+ +L+q++ n+++N +++ +k+g i+++ + ++  l+is +DnG Gip+e + ++f+++ +     ++ +gtGlGl iv+++++ +gGe+++ese g+
  CCG93071.1 271 DKNQLKQAFYNILKNGIEAVGKNGIIKISTHYDDSFLTISFQDNGGGIPQEVMSQVFKPYFT-----TKASGTGLGLLIVRRIIRDHGGEVQIESENGK 364
                 7899**************98899999999999888***********************8888.....789************8888************* PP

                 EEEEEEEEES CS
   HATPase_c 101 Gttftftlpl 110
                 Gtt+ + lp 
  CCG93071.1 365 GTTVKILLPR 374
                 *****99986 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0     4e-14   5.1e-11       1     109 [.      39     139 ..      39     140 .. 0.84

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 4e-14
       PAS_4   1 ldslpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGevigvl 99 
                 ++sl+++++vld  g+++yaN a ++lfg+ pee+lGk   + +p         ++ ++++ e+ +++   +   +e+r+++l+l+Pl+++  +  +++
  CCG93071.1  39 FNSLQEGVVVLDNRGKIQYANMALQRLFGVNPEEVLGKEIKQCVPLI-------DWPELIALEKMVSRDFQVF-YPEPRYLNLSLIPLEEMGNKNAAFI 129
                 799***************************************99984.......4444444444444443333.367***********999999***** PP

       PAS_4 100 visrDiTerr 109
                 +i++DiT+ r
  CCG93071.1 130 AIFYDITASR 139
                 *******987 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   4.5e-13   5.8e-10       2     104 .]      44     137 ..      43     137 .. 0.85
   2 ?   -2.0   0.0       3.3   4.2e+03      31      58 ..     178     206 ..     175     220 .. 0.69
   3 ?   -2.0   0.0       3.3   4.2e+03      61      74 ..     351     364 ..     312     372 .. 0.63

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 4.5e-13
       PAS_9   2 dgilidnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrkkerevevvlirkngetfwvlltaspvkdddgelvgiivilr 100
                 +g+++ ++ g+i yaN a+ rl+G +peevlgk i++++  +  +  +l a+ ++ +   r+++v +  +     + +l+++p+ + ++++ ++i+i+ 
  CCG93071.1  44 EGVVVLDNRGKIQYANMALQRLFGVNPEEVLGKEIKQCV--PLIDWPELIALEKMVS---RDFQVFYPEP----RYLNLSLIPLEEMGNKNAAFIAIFY 133
                 7999999********************************..5555555555555555...7777777777....5788******98899********** PP

       PAS_9 101 Dite 104
                 Dit+
  CCG93071.1 134 DITA 137
                 **95 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.3
       PAS_9  31 vlgksitdlf.vtdpeanerlraaleqgr 58 
                 +l k+++ l+ +t++++++++++ + ++r
  CCG93071.1 178 LLEKRFKKLLqKTEEKGEKEIENSFAAIR 206
                 56677777777777777777777776666 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.3
       PAS_9  61 erevevvlirknge 74 
                  + +ev++  +ng+
  CCG93071.1 351 DHGGEVQIESENGK 364
                 34455555555555 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0     1e-12   1.3e-09       2      47 ..      34      79 ..      33      86 .. 0.94
   2 ?   -2.8   0.0         5   6.4e+03      43      77 ..     166     198 ..     156     200 .. 0.66

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 1e-12
                HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGG CS
         PAS  2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgksll 47
                +l+ai++sl ++++v+D +g+i y+N a ++l+G ++eevlgk + 
  CCG93071.1 34 FLEAIFNSLQEGVVVLDNRGKIQYANMALQRLFGVNPEEVLGKEIK 79
                689****************************************986 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5
                 TSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCE CS
         PAS  43 gkslldliheeddaelaelleqlleqgeesragei 77 
                 g +++ l ++ +   l +++++ll+ +ee+  +ei
  CCG93071.1 166 GNPINALSIHFQL--LEKRFKKLLQKTEEKGEKEI 198
                 5555555555443..77788888888888777665 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.2   1.6e-12   2.1e-09       3      59 ..     155     220 ..     153     224 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.6e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC...........T-HSSCHHHHHHHHHHHHHHHHHHHHHH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkre.........gklteelkeyletiesearrldhlvedlL 59 
                 + ++agvaHEL +P++a++   ++L+++         +k   e +  ++ i+se rrld +++++L
  CCG93071.1 155 TMLAAGVAHELGNPINALSIHFQLLEKRfkkllqkteEKGEKEIENSFAAIRSELRRLDGIINQFL 220
                 6799*********************887899976555444455555******************97 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.1   1.3e-11   1.7e-08       3     100 ..     272     372 ..     270     373 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.3e-11
  HATPase_c_5   3 dldlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg...ek..kkle.sskskkeehGiGlksireivkkykgnlsieaedg.l 93 
                  ++ l   + n+L N iea+ k      +I+++ ++++++l+is++ +  g   e   + ++   ++k +  G+Gl  +r+i++ ++g+++ie e+g  
   CCG93071.1 272 KNQLKQAFYNILKNGIEAVGKNG----IIKISTHYDDSFLTISFQDNGGGipqEVmsQVFKpYFTTKASGTGLGLLIVRRIIRDHGGEVQIESENGkG 365
                  5778889************9955....9****************9986664432243444455578899*************************9823 PP

  HATPase_c_5  94 Ftlsvll 100
                   t+++ll
   CCG93071.1 366 TTVKILL 372
                  4556655 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   5.1e-11   6.5e-08       2      56 ..      34      89 ..      33     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 5.1e-11
       PAS_8  2 rlralfesspdgiavvd.lgdrivdvNqaalellGys.adlkgellgqllpvlrpll 56
                +l+a+f+s+++g++v+d +g+ i ++N a ++l+G++ ++++g+++ q +p ++ ++
  CCG93071.1 34 FLEAIFNSLQEGVVVLDnRGK-IQYANMALQRLFGVNpEEVLGKEIKQCVPLIDWPE 89
                699**************5555.************************97777766655 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.7e-07   0.00034       4      62 ..     276     335 ..     273     365 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.7e-07
  HATPase_c_3   4 ekAlaelvdNsldAdaen..vkievnknrgktgeivieDdGkGmseeelknalrlatsske 62 
                  ++A   +++N+++A  +n  +ki+ + ++ +  +i+++D+G G+++e + +++++  ++k 
   CCG93071.1 276 KQAFYNILKNGIEAVGKNgiIKISTHYDD-SFLTISFQDNGGGIPQEVMSQVFKPYFTTKA 335
                  789999************99999999986.789**************9999**99888877 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   5.1e-05     0.065       2      45 ..      40      82 ..      39     143 .. 0.79
   2 ?   -3.7   0.0        10   1.3e+04      43      60 ..     185     199 ..     178     212 .. 0.45

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-05
       PAS_7  2 enmsqGisvfDadlrLvawNrrylelldlpeelvqvgvpleell 45
                +++++G++v+D+++++   N   ++l+++ +e v  g+++++ +
  CCG93071.1 40 NSLQEGVVVLDNRGKIQYANMALQRLFGVNPEEV-LGKEIKQCV 82
                799*************************988877.788777766 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 10
       PAS_7  43 ellrynaergefgagdve 60 
                 +ll+ + e+ge +   +e
  CCG93071.1 185 KLLQKTEEKGEKE---IE 199
                 3333333333333...22 PP

>> PAS_10  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00059      0.76       1      50 [.      35      85 ..      35     104 .. 0.87
   2 ?    3.8   0.0     0.068        87      29      71 ..     155     199 ..     148     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00059
      PAS_10  1 lnnlLnstpieltflDdnlqirrFtpaakklfklipadv.Grpladihpkk 50
                l+ ++ns++ +++ lD+  +i + + a ++lf ++p++v G ++++++p  
  CCG93071.1 35 LEAIFNSLQEGVVVLDNRGKIQYANMALQRLFGVNPEEVlGKEIKQCVPLI 85
                6789*******************************98755*******9864 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.068
      PAS_10  29 kklfklipadvGrpladi..hpkkavknveeviealrtgekdeve 71 
                 ++l+  ++ ++G+p++++  h +  +k++++++++  ++ ++e e
  CCG93071.1 155 TMLAAGVAHELGNPINALsiHFQLLEKRFKKLLQKTEEKGEKEIE 199
                 688888999******987437779999999999998888777665 PP

>> BshC  Bacillithiol biosynthesis BshC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   1.3e-05     0.017     148     255 ..     176     289 ..     132     297 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.3e-05
                 EEEEETEEEEE.E-....S---SS---TTT-B--.HHHHHHHHHHHHTS---TTHHHHHHHHHHHHHT-SBHHHHHHHH..HHHHHGGGT-EEEETT-H CS
        BshC 148 vnlegegelkklkl....eekgkekkavgrlsld.eeleelleelkeelgesefkeellelleeaylesetladafrkl..vneLFkeyGLvlldaddp 239
                 ++l + +++kkl      + +++ +++ + ++ + ++l+ +++++ + ++ s+ k +ll++ + + ++ e l+  f++l  + eL  + GL ll ad++
  CCG93071.1 176 FQLLE-KRFKKLLQkteeKGEKEIENSFAAIRSElRRLDGIINQFLKAIRPSPPKLRLLSVNQLIKQTVEFLSPEFQNLdiLLELHLDRGLPLLRADKN 273
                 55554.4444443333213344556777778887899************************9999999999**9999754499**************** PP

                 HHHHHHHHHHHHHHHT CS
        BshC 240 elkkleapvfkkelee 255
                 +lk+ + +++k+ +e 
  CCG93071.1 274 QLKQAFYNILKNGIEA 289
                 ***********99986 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00013      0.16      19      42 ..     295     318 ..     272     336 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00013
                   ---EEEEEESSSEEEEEEE-TT-- CS
  2OG-FeII_Oxy  19 ilglgahtdaslltillqddvggl 42 
                   i+++  h+d+s+lti +qd+ gg 
    CCG93071.1 295 IIKISTHYDDSFLTISFQDNGGGI 318
                   78899***************8886 PP

>> MAP65_ASE1  Microtubule associated protein (MAP65/ASE1 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.4   9.3e-05      0.12      17      85 ..     183     251 ..     172     261 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.3e-05
                 HHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHST-----....-SS--SHHHHHHHHHHHHHHHHHHHH CS
  MAP65_ASE1  17 fedll.seeneieqkilneIaelraeasglksiLheepvdvpqsekkelsLlqkkkkldtaleelrkeka 85 
                 f++ll ++e++ e++i+n+ a++r+e+  l  i+++  + +  s++ +l Ll+ ++ +++ +e+l  e++
  CCG93071.1 183 FKKLLqKTEEKGEKEIENSFAAIRSELRRLDGIINQFLKAIRPSPP-KLRLLSVNQLIKQTVEFLSPEFQ 251
                 666651567888************************8888666666.9****************988775 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.18      41     123 ..     280     370 ..     275     372 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
  HATPase_c_2  41 tNavehayleap.egpvevrlesdeealtvevaDsGpgfdpetlpdpteeepkeslkegGrGlalikglvDev..ey.....dgegnvvtm 123
                  +N+ + + +    +g ++++  +d+  lt++++D+G g + e   +  ++  ++++   G+Gl++++++  +   e+     +g+g++v +
   CCG93071.1 280 YNILKNGIEAVGkNGIIKISTHYDDSFLTISFQDNGGGIPQEVMSQVFKPYFTTKASGTGLGLLIVRRIIRDHggEVqieseNGKGTTVKI 370
                  5555555555444688999999****************888887777777779*****************998885555878888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 2777.42
//
Query:       CCG93072.1  [L=343]
Description: N-acetylmuramoyl-L-alanine amidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-40  138.9   0.0    2.4e-40  138.5   0.0    1.1  1  Amidase_3  N-acetylmuramoyl-L-alanine amidase


Domain annotation for each model (and alignments):
>> Amidase_3  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   0.0   1.3e-44   2.4e-40       1     173 [.     124     317 ..     124     318 .. 0.98

  Alignments for each domain:
  == domain 1  score: 138.5 bits;  conditional E-value: 1.3e-44
   Amidase_3   1 ividpGHGgkdpGavgknglkEkdlnlkvalklaklLeakgaeVvltrdddksvslkeranianksradlfvsiHadsaanssasGvevfy........ 91 
                 +vidpGHGg+d+Ga++ ++ +Ek+++l++a++la++L+a+g+ Vv+tr++d++v+l++r+++a  +   +f+siH ++a  ++ +G e++         
  CCG93072.1 124 VVIDPGHGGSDKGATS-RRGTEKNYALDTARRLAAILKARGIPVVMTRNEDVFVPLDQRVRMAAYYPDYIFISIHYNQAYGGG-HGLETYAlsprgsps 220
                 8***************.6679********************************************************999999.*************** PP

   Amidase_3  92 .............leknekkaeskrlaksiqkelkkklglk...nrgvkeannlyvlrktkipavlvElgfisnpedakllkseeyqeklakaiaegi 173
                              +  n++ + +  la+ i++++ + +  +   +rg+k a  ++vlr++  p+vl+E gf+sn  +  l+ +  y++kla+aia+g+
  CCG93072.1 221 tnsgrlyltdyiaSPGNQTDPLNILLAHDIHSQIIRLHPADpdmDRGLKRAR-FKVLRENVLPSVLIEGGFLSNAIESSLVDHAIYRQKLAEAIARGV 317
                 ***********99999999999************9999999999********.*******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2421.25
//
Query:       CCG93073.1  [L=258]
Description: Pantothenate synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-80  269.3   0.0    6.5e-80  268.2   0.0    1.5  1  Pantoate_ligase  Pantoate-beta-alanine ligase
  ------ inclusion threshold ------
      0.041   14.1   0.0       0.15   12.2   0.0    1.8  2  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> Pantoate_ligase  Pantoate-beta-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.2   0.0   7.3e-84   6.5e-80       9     265 ..      10     254 ..       4     255 .. 0.90

  Alignments for each domain:
  == domain 1  score: 268.2 bits;  conditional E-value: 7.3e-84
                      HHHHHHHHHHTT-EEEEEEE-SS-GHHHHHHHHHHHHHSSEEEEEEEEEGGGSSTTSCTTTSEEEHHHHHHHHHHTT-SEEE---HHHHST... CS
  Pantoate_ligase   9 lrellkelrkegkkvglVpTmGaLHeGHlsLvkaakeendvvvvSiFvNplqFgpkedlekYPrtleaDlelleeagvdlvFaPsveemyp... 99 
                      +++l+++++keg+ v lVpTmGaLH+GH++L+++ak+++  +vvSi+vNp+qF p+ed++ YPr+   D ++++e+gvd++FaP+   +y+   
       CCG93073.1  10 MQSLATQWKKEGQPVCLVPTMGALHKGHIALIQEAKKQAGLTVVSIYVNPTQFLPTEDFAIYPRNYPMDKQICAENGVDVLFAPK--GLYSedh 101
                      67788899999999**********************************************************************5..5665557 PP

                      .EEEEECSGGCSTHHHHSTTHHHHHHHHHHHHHHHHT-SEEEEEGGGHHHHHHHHHHHHHTT-SSEEEEEEEEBETTSEBTTGGGGGS-HHHHH CS
  Pantoate_ligase 100 .ttvevkelsevlegasrpghFrGVatvvtkLfnivqpdrayfGqKDaqqlavirrlvkdlnlpveivavpivReedgLAlSSRNkyLseeerk 192
                        ++  +++s+  + ++rpghFrGVatv++kLf +++p++a+fG KDaqql ++rr+v+d+ +p+ei++v++vRee+gLA+SSRN+yL+ee++k
       CCG93073.1 102 sSWIVEEDISNGRCSKTRPGHFRGVATVLMKLFWLIHPTKAIFGWKDAQQLELVRRIVRDFYVPIEIIGVETVREENGLACSSRNAYLTEEQKK 195
                      77888899************************************************************************************** PP

                      HTTHHHHHHHHHHBHHHHHHHHHHHHHTHTTEEEEEEEEEETTTSS..BSSB.SEEEEEEEEEETTEEEEEEE CS
  Pantoate_ligase 193 aAlvlykaLkaakeaealkeaakeeleeeelekadyveivdaetleeleleeekkavllvaakvgkvrLiDni 265
                       A+   ++Lk+a+ +++ ++ a++ele+         ++ + + +e+++       +l+ a++++k+rLiDn+
       CCG93073.1 196 IASLFPRILKEASMMAEPEAWARRELEKI--------SCFTVDYVEKVN------GRLCGAIWIDKIRLIDNF 254
                      *************6566656666655544........444444444432......5799************96 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.7e-05      0.15       9      38 ..      33      61 ..      29      89 .. 0.84
   2 ?   -0.9   0.0      0.19   1.7e+03     102     119 ..     170     191 ..     124     210 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.7e-05
                     --HHHHHHHHHHHHHSSESEEEEEESSTHC CS
  CTP_transf_like  9 iHlGHlrlleqakklleedlivgvpsdepp 38
                     +H+GH++l+++akk+ ++  +v ++ +++ 
       CCG93073.1 33 LHKGHIALIQEAKKQAGL-TVVSIYVNPTQ 61
                     7*****************.67777766654 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.19
                      HHHHHHHHHHHEEEEEE....H CS
  CTP_transf_like 102 eleeilgnvklvvvsrp....e 119
                       +e++ ++++l++ sr+    e
       CCG93073.1 170 GVETVREENGLACSSRNayltE 191
                      6777888888888888744442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1724.02
//
Query:       CCG93074.1  [L=301]
Description: Membrane protein TerC, possibly involved in tellurium resistance [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-38  132.1   3.8    1.8e-38  132.1   3.8    2.1  2  TerC      Integral membrane protein TerC family
    0.00033   20.5   0.5    0.00033   20.5   0.5    1.9  2  DUF475    Protein of unknown function (DUF475)


Domain annotation for each model (and alignments):
>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   1.9     0.058   5.2e+02     131     178 ..       4      52 ..       2      55 .. 0.62
   2 !  132.1   3.8     2e-42   1.8e-38       1     180 [.      64     266 ..      64     267 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.058
        TerC 131 lfivitavi.lsilvlrflakllakllerfptlkylalalllligvklv 178
                 ++i++++++ l++++ +f ++l +  l++    ++l ++++l++g+ l 
  CCG93074.1   4 FYILFFSLLlLGLIAQVFGSFLSTGSLRESTLHSLLWVFFILFLGLWLG 52 
                 5677777651455555555555556666666667777888888887765 PP

  == domain 2  score: 132.1 bits;  conditional E-value: 2e-42
        TerC   1 ltlvlleivLsiDNlvviallvkk..lpeeqqkkalllGilgAlvlRillillavallelfdlilligglfLlytavkellekr............... 82 
                 ++++++e++LsiDNl+++ ++++     e+ ++k l lGi+ Al+lRilli+++ ++++ + +i+ ++glfL++ a+++ + ++               
  CCG93074.1  64 FAVFWIEYLLSIDNLILFHVIFEFsqTAESFRHKLLSLGIFSALFLRILLIVFGLFVASRWAMIFPLFGLFLFFAAYRLARPQKdkpprllgydkkfff 162
                 57899*****************99878999***************************************************988888888887665555 PP

        TerC  83 ......lenklvkeekkkkkktkst............llavviqielaDlvfslDSvlaavaitsdlfivitavilsilvlrflakllakllerfptlk 163
                       +++k++            +            l ++ ++ie++D++f+lDSv+a +ait+d++++i ++i ++ +lr+l++l+ +  ++f   +
  CCG93074.1 163 gpfvyePAEKTK------------FlfkdgarigfgsLALTFLAIETTDILFALDSVPASFAITTDPLLLISGNICGVFGLRSLYFLVERTAKTFLSFN 249
                 555543223444............1444455555555************************************************************** PP

        TerC 164 ylalalllligvklvle 180
                 +l ++ll+l g++l+l+
  CCG93074.1 250 TLSALLLVLMGIELLLK 266
                 **************985 PP

>> DUF475  Protein of unknown function (DUF475)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3       0.1   9.2e+02      14      39 ..      90     114 ..      75     145 .. 0.64
   2 !   20.5   0.5   3.7e-08   0.00033     183     231 ..     189     237 ..     165     254 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.1
      DUF475  14 lsefWqklfltlGiliavfGmrlvfP 39 
                  +e +++ +l lGi+ a f +r+++ 
  CCG93074.1  90 TAESFRHKLLSLGIFSALF-LRILLI 114
                 4566677777777777766.343322 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 3.7e-08
      DUF475 183 lalflylevldasfsfdGviGafaitkdivlialGlgigamfvrsltvy 231
                   +fl +e  d  f++d v  +fait+d++l++ G   g + +rsl   
  CCG93074.1 189 ALTFLAIETTDILFALDSVPASFAITTDPLLLISGNICGVFGLRSLYFL 237
                 458********************************98888889999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 1915.14
//
Query:       CCG93075.1  [L=166]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.9e-34  115.8   0.0    1.2e-33  115.5   0.0    1.1  1  DNase-RNase  Bifunctional nuclease


Domain annotation for each model (and alignments):
>> DNase-RNase  Bifunctional nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.0   6.7e-38   1.2e-33       2     125 ..      10     134 ..       9     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 6.7e-38
                  EEEEEEETTTTEEEEEEEETTSSEEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEEET---.....E CS
  DNase-RNase   2 vagialdassqspvvlLreeegrrvlpIwigaaeaqaialalegeeppRPlthDLlasllealgakvervvItdledgtfyAelvlrkeeee.....l 94 
                  v+gi  ++++  +++ L +ee+  v+ I +++   +aia+a++ge+ +RPlth+L+a ++++++++vervvI++l+ +t++A+l lr e +e     +
   CCG93075.1  10 VKGILPSSPN-GYAIFLGNEEK--VFVINVDSYVGRAIAMAIRGERNERPLTHELMAMIFDSFSINVERVVINELRSNTYFARLLLRAE-NEvhkkiI 103
                  7777766666.89999999884..79*************************************************************97.2235679* PP

                  EEEE-HHHHHHHHHHHT--EEEEHHHHHHH- CS
  DNase-RNase  95 eidaRpSDaiaLAlrtgapIyveeevleeas 125
                  eidaRpSD++ LAl++++pIyv+e+v+ee +
   CCG93075.1 104 EIDARPSDCLTLALQYKCPIYVAEDVWEEVE 134
                  ***************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      807  (0.0450109); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1192.84
//
Query:       CCG93076.1  [L=654]
Description: Arginine decarboxylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-42  144.2   0.0    6.5e-42  143.6   0.0    1.2  1  Orn_Arg_deC_N   Pyridoxal-dependent decarboxylase, pyridoxal 
    1.8e-22   79.4   0.9    5.4e-22   77.9   0.9    1.8  1  Arg_decarb_HB   Arginine decarboxylase helical bundle domain
    8.5e-12   45.5   0.2    3.2e-11   43.6   0.2    2.1  1  Arg_decarbox_C  Arginine decarboxylase C-terminal helical ext
  ------ inclusion threshold ------
       0.11   12.5   0.1         17    5.4   0.0    2.6  2  RuBisCO_small   Ribulose bisphosphate carboxylase, small chai
       0.12   12.3   0.2       0.47   10.3   0.0    2.1  2  DUF1507         Protein of unknown function (DUF1507)


Domain annotation for each model (and alignments):
>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.6   0.0   1.8e-45   6.5e-42       7     247 .]      82     344 ..      76     344 .. 0.88

  Alignments for each domain:
  == domain 1  score: 143.6 bits;  conditional E-value: 1.8e-45
                    HHHHHHHHCT...CCEEEEEGGG---HHHHHHHHHTT....EEEEESSHHHHHHHHHCTTTGGGEEEEESS--HHHHHHHHHCTHT....EEEESS CS
  Orn_Arg_deC_N   7 klkrwkkalp...rikvfYavKansdlavlellaelG....lgldcaSkaElelvlaagvsperiifanpckqreelryalekgvk....vvtvdn 91 
                    +++++ ++ +   +++ ++++K+n+ ++v+e + + G     gl+++SkaEl ++la+  +pe   ++n+ k++ ++ ++   ++     v ++++
     CCG93076.1  82 AFNEAIEEAGykgKYRAVFPIKVNQLREVIEEIIDAGlpfhHGLEAGSKAELFAALAMLKDPEALLICNGFKDKLFVDAIFMGRKLgkkvVQVLEK 177
                    5555555555667999*********************8887799*****************************987776655443333346789** PP

                    HHHHHHHHHHHCC....EEEEEEEE-SCCSSSSTCCCSSSTTSSSSEEHC...HHHHHHHHHHHHTTEEEEEEE---BSSC-SCHHHHHHHHHHHH CS
  Orn_Arg_deC_N  92 veeleklaklape....akvllRiktdvsaatcelistggessKFGaale...eavealleaakeenlqlvGvsfHvGSgvsdleafvkavekalk 180
                    +eel+ + + + +    + + +R ++ +s+++ ++  ++ge+ KFG++++   + ++ l+e   ++ lql  ++fH+GS++ d+ ++++av++a++
     CCG93076.1 178 MEELDLVIDAMGRfkvdPIIGVRLQL-ASKGRGHWAYSSGEEAKFGITTAellQVIQRLKENGLSNCLQL--IHFHIGSQIPDILTIKRAVREAAR 270
                    ************988878889****9.9******************9998555666667777778999**..************************ PP

                    HHHHHHHHT---SEEE--S-BS-HCSTTSSSST.....HHHHHHHHHHHHHHHHH..TSSS-EEEE--SHHHHG CS
  Orn_Arg_deC_N 181 lfdelaelGvklkiLdvGGGfgveyeeeeeplk.....leeiaekirealeeafp..gdkevtiiaEpGRalva 247
                     + +l +lG+ ++ +dvGGG+gv+y + ++  +     l+e+a+++   + e+++    +++t+++E+GRa+va
     CCG93076.1 271 YYARLYQLGFPIQYIDVGGGLGVDYDGSRSTESsinysLQEYARDVVYNIAEICNeeRVPHPTVVSESGRAVVA 344
                    *************************9887766678888****************99899*************97 PP

>> Arg_decarb_HB  Arginine decarboxylase helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.9   1.5e-25   5.4e-22       3      83 ..     372     451 ..     371     452 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 1.5e-25
  Arg_decarb_HB   3 dapellqnLwelleelsqrnlqEiyhDavhyldearelFrlGllsLeerAkaEqlylaicrkirkllkeeerapreildeL 83 
                    ++++l+q+L e+ + l+++n +E+yhD ++++++a+++F+lGll+L+++A +E+ly++ic+++ +l + ++++p+e + +L
     CCG93076.1 372 SKHKLVQDLLEIKALLNKKNRLENYHDSLQIKEDAQSMFDLGLLDLQTKAEIETLYWEICKEVVNLYNGAKQVPEE-IRKL 451
                    68**************************************************************************.6665 PP

>> Arg_decarbox_C  Arginine decarboxylase C-terminal helical extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.2   8.9e-15   3.2e-11       2      51 .]     583     635 ..     582     635 .. 0.97

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 8.9e-15
  Arg_decarbox_C   2 adVLryVqYdpeeLlerlrrqveaa...grLtpeerqalleeleagLkgyTYL 51 
                      + L+ VqY+p+ L ++++ qv+ a   + L+p+e+++lle +e+gL+  TYL
      CCG93076.1 583 GEALSSVQYEPKILENAMKSQVDYAikqNLLKPNEGMRLLEFYEQGLRRSTYL 635
                     6889************************************************9 PP

>> RuBisCO_small  Ribulose bisphosphate carboxylase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0049        17      33      76 ..     417     460 ..     383     467 .. 0.86
   2 ?    4.2   0.0     0.012        42       4      27 ..     589     612 ..     586     634 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0049
                    EE-GGGTT-S--EEES---TT---HHHHHHHHHHHHHHSTTSEE CS
  RuBisCO_small  33 fedkekarnryWtmwklpmfdlkdaaevlaeleecrkaypeeyv 76 
                     ++k+++++ yW++ k  +   + a++v +e+++ r++ +++y+
     CCG93076.1 417 LQTKAEIETLYWEICKEVVNLYNGAKQVPEEIRKLRESLSDQYL 460
                    566778899*******999999*****************99995 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.012
                    TTTS----HHHHHHHHHHHHHTT- CS
  RuBisCO_small   4 fsylpdltdeeiakqveyllsqgw 27 
                    + y p++ ++ +++qv+y+++q+ 
     CCG93076.1 589 VQYEPKILENAMKSQVDYAIKQNL 612
                    6799*****************985 PP

>> DUF1507  Protein of unknown function (DUF1507)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.4   8.7e+03      62      74 ..     165     177 ..     161     186 .. 0.75
   2 ?   10.3   0.0   0.00013      0.47      48      77 ..     601     630 ..     598     637 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHH CS
     DUF1507  62 eeeGkqllseLek 74 
                 ++ Gk++++ Lek
  CCG93076.1 165 RKLGKKVVQVLEK 177
                 5678999999987 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00013
                 HHHHHHHHHTTSS-HHHHHHHHHHHHHHHT CS
     DUF1507  48 srevdfavrlglieeeeGkqllseLekeln 77 
                 + +vd+a++ +l++ +eG +ll+  e+ l 
  CCG93076.1 601 KSQVDYAIKQNLLKPNEGMRLLEFYEQGLR 630
                 689********************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4593.71
//
Query:       CCG93077.1  [L=310]
Description: Transcriptional regulator, LysR/CysB family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-47  159.6   0.0    7.9e-47  159.3   0.0    1.1  1  LysR_substrate  LysR substrate binding domain
    1.3e-20   73.1   0.2      2e-20   72.5   0.2    1.3  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.032   14.3   0.3       0.33   11.0   0.0    2.5  3  HTH_20          Helix-turn-helix domain
      0.071   13.0   0.1        0.2   11.5   0.1    1.9  1  HTH_5           Bacterial regulatory protein, arsR family
        0.1   12.4   0.4        8.2    6.2   0.0    3.1  4  Endonuc-BglII   Restriction endonuclease BglII


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.3   0.0   2.2e-50   7.9e-47       3     206 ..      88     291 ..      86     293 .. 0.98

  Alignments for each domain:
  == domain 1  score: 159.3 bits;  conditional E-value: 2.2e-50
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvs 97 
                     + +g +r++a+ +++ + lp  l++f+++yPev ++++  +s ++ + +aeg+ D++i+a p ++  + ++p+ +++lv+++sp+h++ + ++v 
      CCG93077.1  88 SISGLIRVSAIYSVGLHELPYYLKKFLKLYPEVNVRVEYRHSRQVYQDIAEGHSDIGIVAYPSPRKLIKIEPFRKDRLVVICSPSHRFSNLKEVG 182
                     689******************************************************************************************** PP

                     GGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCC CS
  LysR_substrate  98 ledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgre 192
                     le++ +e +i ++ + ++r++l++++r++gl+ r+++e++++e+++++v+   G+a++p  ++ +el++g l++l+l++pp  r+++l+y++gr 
      CCG93077.1 183 LEEISKEGFIAFSSDMPTRRELDKLFRDRGLEFRPVMEFDNVETVKRAVEIDAGVAIVPMATITQELKNGTLRMLELSGPPCYRPIGLLYKSGRM 277
                     *******************************************************************************8888************ PP

                     CHHHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidflre 206
                     l+pa+r fi++l++
      CCG93077.1 278 LTPAMRKFIELLQK 291
                     ***********986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.2   5.6e-24     2e-20       2      60 .]       4      62 ..       3      62 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 5.6e-24
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                + l++f  ++e++sf++AA+   +sq+avs+qi++LEe++gvpL+eR +r+++LT +Ge
  CCG93077.1  4 ETLKAFRDLVESRSFSKAAQLNKISQSAVSQQIRSLEERFGVPLIERGSRKVQLTKEGE 62
                679********************************************9999*******7 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.2e-05      0.33      23      51 ..      14      43 ..       8      53 .. 0.88
   2 ?   -0.2   0.0       0.3   1.1e+03      42      60 ..     172     190 ..     172     190 .. 0.87
   3 ?   -3.3   0.0       2.7   9.7e+03      10      24 ..     199     212 ..     196     220 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.2e-05
                TTB-HHHHHHHHTS-HHHHHHHHHHHHH.C CS
      HTH_20 23 egltaselaerldlskntlsyHLrvLee.a 51
                e +++s  a++  +s++ +s+++r Lee  
  CCG93077.1 14 ESRSFSKAAQLNKISQSAVSQQIRSLEErF 43
                67999**********************955 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.3
                 HHHHHHHHHCTTEEEECTE CS
      HTH_20  42 syHLrvLeeagLvevvreg 60 
                 s+++  L e+gL e  +eg
  CCG93077.1 172 SHRFSNLKEVGLEEISKEG 190
                 789999******9988876 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.7
                 HHHHHHHHHHSTCTT CS
      HTH_20  10 PvRrrilraLaraeg 24 
                 P+Rr++ +++ r++g
  CCG93077.1 199 PTRRELDKLF-RDRG 212
                 8888875555.5555 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.7e-05       0.2       8      41 ..       6      41 ..       2      42 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.7e-05
                HHHHTT..SSEEHHHHHHHHTS-HHHHHHHHHHHHH CS
       HTH_5  8 LklLae..gelcvcelaeelglsqstvShHLkkLre 41
                Lk+ ++  ++++++  a   ++sqs+vS++ + L+e
  CCG93077.1  6 LKAFRDlvESRSFSKAAQLNKISQSAVSQQIRSLEE 41
                556666666677777788889*************97 PP

>> Endonuc-BglII  Restriction endonuclease BglII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.2   7.8e+03     102     131 ..      12      23 ..       7      43 .. 0.53
   2 ?    0.3   0.0      0.15   5.4e+02      12      51 ..      66     105 ..      61     121 .. 0.81
   3 ?    1.6   0.0      0.06   2.2e+02      84     104 ..     118     138 ..     106     143 .. 0.84
   4 ?    6.2   0.0    0.0023       8.2     107     139 ..     226     253 ..     199     260 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.2
  Endonuc-BglII 102 LlkfrlffeldlIdvGilvvrmkslekvfk 131
                    L++ r+f++                    +
     CCG93077.1  12 LVESRSFSK------------------AAQ 23 
                    444333333..................222 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.15
  Endonuc-BglII  12 nelqeilevLkefrlslseikssgenksdvkkrikellaa 51 
                    ++ +ei+++  +++++ seik+s    + v++ ++  l +
     CCG93077.1  66 HASKEIVDIYLKIEAKISEIKASISGLIRVSAIYSVGLHE 105
                    56789****************9988888877777666665 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.06
  Endonuc-BglII  84 nrVaveiefnkkdqtyrDLlk 104
                     +V v +e+++  q+y+D+ +
     CCG93077.1 118 PEVNVRVEYRHSRQVYQDIAE 138
                    5899**************975 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0023
  Endonuc-BglII 107 lffeldlIdvGilvvrmkslekvfkttkygast 139
                    +++ +  Id+G+ +v+m+ + +     + +++t
     CCG93077.1 226 TVKRAVEIDAGVAIVPMATITQ-----ELKNGT 253
                    5677789***********9998.....444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2212.03
//
Query:       CCG93078.1  [L=246]
Description: Predicted enzyme with a TIM-barrel fold [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-28   99.9   0.0    1.9e-28   99.6   0.0    1.0  1  Ala_racemase_N  Alanine racemase, N-terminal domain
  ------ inclusion threshold ------
      0.021   14.5   0.1      0.074   12.7   0.0    1.8  2  HrpB1_HrpK      Bacterial type III secretion protein (HrpB1_H
      0.046   13.1   0.0      0.083   12.2   0.0    1.5  2  Orn_Arg_deC_N   Pyridoxal-dependent decarboxylase, pyridoxal 


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.0   3.2e-32   1.9e-28       3     218 ..      14     232 ..      11     233 .. 0.88

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 3.2e-32
                     HHHHHHHHHHHHHHS.CT..TSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTSCSEEEEESC.STGGGHHHHHHT.TEEE CS
  Ala_racemase_N   3 ldalrhNlrrlrala.gp..gaklmavvKanayghgavevaralaeggadgfgvatleEalelreagitapilvleg.fspeelaalaey.dltv 92 
                     l++l++ +++++++  ++  +  ++av+K    g +++e +    ++g+ ++g+++++Ea+  +e   ++ i  + g  +++++++ a+  d++ 
      CCG93078.1  14 LEKLQEKIEKAAQKSgRRadAITVVAVTKG--FGPEIIETLL---KQGILHIGENRVQEARIKKEIIGEKGIWHFIGhLQKNKIKLTAHLfDWVD 103
                     788999999999999533664458888888..8888866665...577************96555544455555555599*********99**** PP

                     EESSHHHHHHHHHHHHHTTS-EEEEEEBESSSS..SSSBSCHHHHHHHHHHHHTTTEEEEEEE-S-SSTTSTSHHHHHHHHHHHHHHHHHHHTT. CS
  Ala_racemase_N  93 tvdsleqlealaaaareagkplrvhlkidtgmg..RlGftpeeleellealaalpglrleglmtHfasadepdeeteaqlarfeealeelekag. 184
                      +dsle++  l+++a++ gk+l+v+++++t+++  + G tpe++++l+ a+++lpgl+l glmt+ +  +ep+ +++  ++ ++++++++e++  
      CCG93078.1 104 SLDSLEEATLLSHVAKAIGKTLKVLVQVNTSGEstKHGTTPEQAQALCLAINELPGLELLGLMTIAPLLKEPE-KARPFFSLLRKLRDQIETNTn 197
                     ******************************9999*************************************99.8888************99999 PP

                     GGGSEEEEESHHHHHHSGGG.TTEEEESGGGGT-S CS
  Ala_racemase_N 185 lrppvvslanSaaillaaah.fdmvRpGialyGls 218
                     lr p++s+++S ++  a+ +  +m+R+G++l G +
      CCG93078.1 198 LRLPILSMGMSQDFEVAIEEgATMIRIGTFLLGPR 232
                     *****************7456**********9976 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.2e-05     0.074      16      65 ..      19      69 ..       7      87 .. 0.82
   2 ?   -1.4   0.0      0.28   1.7e+03      66      90 ..     126     153 ..     101     157 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
  HrpB1_HrpK 16 evlslal.asedtedaellLdalrvLrPevaeldllegvlliergrweeAl 65
                e + +a+ +s++ +da ++++  + + Pe+ e  l +g+l+i ++r++eA+
  CCG93078.1 19 EKIEKAAqKSGRRADAITVVAVTKGFGPEIIETLLKQGILHIGENRVQEAR 69
                55555554999**************************************94 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.28
  HrpB1_HrpK  66 rlLreve...aeasgtpyakaLlAlcLa 90 
                 ++L +v+   ++++++ + +  +AlcLa
  CCG93078.1 126 KVLVQVNtsgESTKHGTTPEQAQALCLA 153
                 4444444333444555555555666665 PP

>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.86   5.1e+03     220     230 ..      16      26 ..       7      43 .. 0.48
   2 ?   12.2   0.0   1.4e-05     0.083     121     157 ..     130     165 ..      82     207 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.86
                    HHHHHHHHHHH CS
  Orn_Arg_deC_N 220 kirealeeafp 230
                    k++e++e+a++
     CCG93078.1  16 KLQEKIEKAAQ 26 
                    33333333322 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.4e-05
                    TCCCSSSTTSSSSEEHCHHHHHHHHHHHHTTEEEEEE CS
  Orn_Arg_deC_N 121 elistggessKFGaaleeavealleaakeenlqlvGv 157
                    + ++t+ges+K+G++ e+a +  l++++  +l+l+G+
     CCG93078.1 130 Q-VNTSGESTKHGTTPEQAQALCLAINELPGLELLGL 165
                    2.489***********99999999999999******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1124  (0.0626917); expected 358.6 (0.02)
Passed bias filter:                      908  (0.0506442); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 1810.29
//
Query:       CCG93079.1  [L=276]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   16.2   0.0      0.021   15.3   0.0    1.4  1  DUF5629   Family of unknown function (DUF5629)


Domain annotation for each model (and alignments):
>> DUF5629  Family of unknown function (DUF5629)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   1.2e-06     0.021      45      86 ..      72     110 ..      68     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.2e-06
                 -SEEEEEEEEETTEEEEEEEEHHHHHS-EE-TTSSEEEEE-S CS
     DUF5629  45 eevvlriealdGrerrkWkfsynavmearydaeddsWllege 86 
                 e+  l ie  dG   r Wkfs+ ++++a +++++ s++++++
  CCG93079.1  72 EDSFLGIEHRDG---RYWKFSWPQIQKAVQKTKESSYKIKSD 110
                 566666666666...68*********************9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1959.79
//
Query:       CCG93080.1  [L=154]
Description: putative transcriptional regulator YrzC [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-25   87.6   0.1    7.7e-25   87.1   0.1    1.3  1  Rrf2          Transcriptional regulator
  ------ inclusion threshold ------
      0.011   15.4   0.3      0.022   14.4   0.0    1.6  2  HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor


Domain annotation for each model (and alignments):
>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.1   8.6e-29   7.7e-25       1      83 []       1      83 [.       1      83 [. 0.98

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 8.6e-29
                X---HHHHHHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSHCCCSBHHHHHHHH CS
        Rrf2  1 MklsskteyalhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakppeeItlldvvrav 83
                M l+++++yal+all+La+e+ ++++ ++eiae+ +i++++le il +L+++gl+ s+rGkgGGy+L  +pe+I+++ v+r +
  CCG93080.1  1 MFLTKRSKYALRALLFLAREQARGTILIQEIAEKEKIPKKFLESILLELKNNGLLSSRRGKGGGYALEYSPEKISIGSVIRLI 83
                789*****************************************************************************975 PP

>> HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor, HrcA DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.4e-06     0.022       2      64 ..       3      66 ..       2      73 .. 0.94
   2 ?   -3.1   0.0       0.7   6.2e+03       6      19 ..     128     141 ..     124     145 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.4e-06
  HrcA_DNA-bdg  2 LtsvqkeilqaLielyrkk.kravKgeeiAevlkrneGtvRNqlqsLkalgLvegvpGPkGGYk 64
                  Lt+  k  l+aL+ l r++ + ++  +eiAe+ k  +  +  +l  Lk  gL++++ G  GGY 
    CCG93080.1  3 LTKRSKYALRALLFLAREQaRGTILIQEIAEKEKIPKKFLESILLELKNNGLLSSRRGKGGGYA 66
                  78888999*******99996789****************************************5 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.7
  HrcA_DNA-bdg   6 qkeilqaLielyrk 19 
                    k+ lq+L++  +k
    CCG93080.1 128 DKTTLQELLQRENK 141
                   56777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1061.68
//
Query:       CCG93081.1  [L=238]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.013   14.8   1.1       0.02   14.1   1.1    1.2  1  SIL1             Nucleotide exchange factor SIL1
      0.014   14.8   0.1      0.018   14.4   0.1    1.1  1  Pex26            Pex26 protein
      0.024   14.6   0.5      0.034   14.1   0.5    1.1  1  Ins_allergen_rp  Insect allergen related repeat, nitrile-spec
      0.035   13.6   5.9      0.046   13.2   5.9    1.1  1  Golgin_A5        Golgin subfamily A member 5
      0.035   14.4   3.3       0.24   11.7   3.3    2.0  1  GAT              GAT domain
      0.052   13.8   0.2      0.083   13.1   0.2    1.3  1  VPS9             Vacuolar sorting protein 9 (VPS9) domain
      0.053   13.0   1.5      0.091   12.3   1.5    1.3  1  Allexi_40kDa     Allexivirus 40kDa protein
      0.077   12.4   0.4        0.1   12.0   0.4    1.2  1  HBM              Helical bimodular sensor domain
      0.085   12.8   1.2       0.12   12.3   1.2    1.1  1  ATPase_2         ATPase domain predominantly from Archaea
       0.11   13.2   2.5       0.19   12.4   2.5    1.3  1  AATF-Che1        Apoptosis antagonizing transcription factor
       0.12   12.0   3.1       0.17   11.5   3.1    1.1  1  GrpE             GrpE
       0.14   12.2   1.5       0.21   11.7   1.5    1.4  1  COG2             COG (conserved oligomeric Golgi) complex com
       0.15   12.1   3.9       0.23   11.6   3.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.58   10.2   4.7        2.4    8.3   1.0    2.3  2  DUF4460          Domain of unknown function (DUF4460)
        0.6   10.3   4.1        3.3    7.9   3.0    2.7  2  DUF4279          Domain of unknown function (DUF4279)


Domain annotation for each model (and alignments):
>> SIL1  Nucleotide exchange factor SIL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.1   1.7e-05      0.02      51     132 ..     120     206 ..     110     210 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
        SIL1  51 fellknlslndklpvelrelsariigssLRNNpeavenvlekkp....efvkelfeelselsk.kksdvliKRylsilqeLlqnsef 132
                 ++ll++l  + +++ e +  +++  ++ L N  + +e+++++ +    e++k ++ee +++++ +++d l KR+lsi++ L ++++ 
  CCG93081.1 120 SRLLQSLPTQTSTKDEENREAMKNFIAYLENYQKQIEEIIHTLAdshqEITKIVVEESKKSKSpSNQDELLKRLLSIVETLEKKKHL 206
                 456688866666566666666666778899999888888776541121666666666666555999***************999875 PP

>> Pex26  Pex26 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.5e-05     0.018     174     243 ..     135     208 ..     123     234 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
       Pex26 174 aEAeelvegsaafseeqrqealeiieekkqqqkeesseseeeqk....vskegslsqkllsllrllrrllllvv 243
                 +E +e +++ +a+ e+ ++++ eii++ +++++e +  + ee+k     s++++l ++lls+++ l+++ +l++
  CCG93081.1 135 EENREAMKNFIAYLENYQKQIEEIIHTLADSHQEITKIVVEESKksksPSNQDELLKRLLSIVETLEKKKHLLR 208
                 6899999*******************998887665544333333255588999*************99877665 PP

>> Ins_allergen_rp  Insect allergen related repeat, nitrile-specifier detoxification
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.5   2.8e-05     0.034      34     104 ..     118     190 ..     109     204 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.8e-05
  Ins_allergen_rp  34 kavkflrssefkelvqqlealpevkellnyleqagldvyeilnvlndflkasgikelvpplve.saseskk...l 104
                      ++ + l+s   ++  ++ e+ +++k+++ yle+ + +++ei+++l+d    ++i ++v+ +++ s+s s++   l
       CCG93081.1 118 EVSRLLQSLPTQTSTKDEENREAMKNFIAYLENYQKQIEEIIHTLADSH--QEITKIVVEESKkSKSPSNQdelL 190
                      5668999******************************************..788889999887544433323343 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.9   3.8e-05     0.046     100     185 ..     124     206 ..     103     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-05
   Golgin_A5 100 eqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdrekeieklrnqlttkslsssseselesRlkqLtesLiqKQtv 185
                 + l +++++    ++e ++ ++++ +  e+ +++ +++ + + d  +ei k+  + ++ks+s s+++el +Rl +++e+L +K  +
  CCG93081.1 124 QSLPTQTST---KDEENREAMKNFIAYLENYQKQIEEIIHTLADSHQEITKIVVEESKKSKSPSNQDELLKRLLSIVETLEKKKHL 206
                 444444444...458999999999999*****************************************************999765 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.3    0.0002      0.24      10      52 ..     122     167 ..     117     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
         GAT  10 mLsstepd...eellenellkeLyetckamqpriqklieetadeed 52 
                 +L+s++ +   ++ ++ e++k +   +++ q++i ++i+++ad ++
  CCG93081.1 122 LLQSLPTQtstKDEENREAMKNFIAYLENYQKQIEEIIHTLADSHQ 167
                 5666652234578899*************************99885 PP

>> VPS9  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2     7e-05     0.083      11      57 ..     148     197 ..     138     209 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7e-05
        VPS9  11 lsea.ksPreKlkcllrtieeiteav..skseegeslgaDdlLPiliyvi 57 
                 l+++ k+  e +++l  +++eit+ v  +++++++++++D+lL  l+ ++
  CCG93081.1 148 LENYqKQIEEIIHTLADSHQEITKIVveESKKSKSPSNQDELLKRLLSIV 197
                 54452667789999*************9999999*********8877655 PP

>> Allexi_40kDa  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.5   7.6e-05     0.091      34     117 ..      93     175 ..      85     210 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.6e-05
  Allexi_40kDa  34 LPldeLyGqLhaLhqnsLeWLthishdvdsiinklnpvsllsqttlLselrdalrtltklldklksvekklelsaetasdskll 117
                    Pld L G+L  L  n+  +L  i ++v +++++l + +++ ++ +   +++ + +l++  ++++++ ++l +s++++++  + 
    CCG93081.1  93 KPLDTLPGLLLLLEANA-AYLDTIPKEVSRLLQSLPTQTSTKDEENREAMKNFIAYLENYQKQIEEIIHTLADSHQEITKIVVE 175
                   59999999999999997.69999************9999888555555555555555555444444444444444443332221 PP

>> HBM  Helical bimodular sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   8.3e-05       0.1     172     227 ..     112     167 ..     105     199 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.3e-05
                 HHHHHHHHHHHHHH-GG.GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         HBM 172 ldaalaeldqlrqalasdpraalqqlesalskYRaaleqfkaavaaieqarkemte 227
                 ld+  +e+ +l q l+ +   + ++ ++a+++++a le++++ +++i+   +   +
  CCG93081.1 112 LDTIPKEVSRLLQSLPTQTSTKDEENREAMKNFIAYLENYQKQIEEIIHTLADSHQ 167
                 55555666666666666666666666666666666666666655555544433333 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.2    0.0001      0.12      91     160 ..     137     208 ..     104     212 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
    ATPase_2  91 leeilk...eksklvfkaielllekikkkgkk.iiiiiDelqklidlglngaellvkeLlnliesltkekhlcv 160
                   e +k      ++ +k+ie+++  + ++ ++   i++ e  k +     ++ +l+k Ll+++e l k+khl  
  CCG93081.1 137 NREAMKnfiAYLENYQKQIEEIIHTLADSHQEiTKIVVEESKKSK--SPSNQDELLKRLLSIVETLEKKKHLLR 208
                 222222222344555555555555555555553335555665555..44489*******************975 PP

>> AATF-Che1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.5   0.00016      0.19      33     123 ..     124     202 ..     108     210 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00016
   AATF-Che1  33 nqLpqpetlkeflesseefeealeeaekalkklleslleLreelleqne.ikklaeskeeeekkkskrkrkkkkkeetsleelwkeleklek 123
                 ++Lp+    ++  +++ee++ea++++ + l++  +++ e+ ++l ++++ i+k+  +++        +k k+++++++ l+ l + +e+lek
  CCG93081.1 124 QSLPT----QTS-TKDEENREAMKNFIAYLENYQKQIEEIIHTLADSHQeITKIVVEES--------KKSKSPSNQDELLKRLLSIVETLEK 202
                 34443....222.34899**************************888888776544433........4444444555556666555555555 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.1   0.00015      0.17       6      78 ..     130     203 ..     123     210 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
                 .CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHH CS
        GrpE   6 eeeeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaie.kfakdLLpvlDnlera 78 
                 ++++ e++ e+ ++ ++ le+  k+++e +  l+   ++++k + +e ++ k+ +++ +++k LL++++ le+ 
  CCG93081.1 130 TSTKDEENREAMKNFIAYLENYQKQIEEIIHTLADSHQEITKIVVEESKKSKSPSNQdELLKRLLSIVETLEKK 203
                 45556666677777789999999999999999999999******9999988887766269***********985 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.5   0.00018      0.21      68     129 ..     138     203 ..     111     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
        COG2  68 qeeleevesplaaarkkvesvreklsereeeveskleeakeleekr....ellklllkldevvekl 129
                 +e+++++   l++ +k++e++++ l++ ++e+++ + e ++  +      ellk+ll++ e++ek 
  CCG93081.1 138 REAMKNFIAYLENYQKQIEEIIHTLADSHQEITKIVVEESKKSKSPsnqdELLKRLLSIVETLEKK 203
                 5677777888999********************998766555444445668888888888888775 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.9   0.00019      0.23      12      85 ..     132     208 ..     117     213 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
       DHR10  12 aelErkarelqakidalqvvekdlrsciklleeieaelak...leeakkklkelrdaleekeielrelerkeerlqr 85 
                 ++ E++  ++++ i+ l++++k+++++i  l + ++e+ k   +e+ k+k  +++d+l ++     e   k+++l r
  CCG93081.1 132 TKDEENREAMKNFIAYLENYQKQIEEIIHTLADSHQEITKivvEESKKSKSPSNQDELLKRLLSIVETLEKKKHLLR 208
                 566888899*******************************4333444555557999999999998888888888876 PP

>> DUF4460  Domain of unknown function (DUF4460)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.0     0.002       2.4      31      58 ..     132     162 ..     120     187 .. 0.69
   2 ?    3.4   0.5     0.066        79      37      54 ..     187     204 ..     177     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.002
     DUF4460  31 kekkvNeeSLklLnsyleelkkeekk...si 58 
                 ++ + N e +k + +yle+++k+ ++    +
  CCG93081.1 132 TKDEENREAMKNFIAYLENYQKQIEEiihTL 162
                 44488*****************977655433 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.066
     DUF4460  37 eeSLklLnsyleelkkee 54 
                 +e Lk+L s++e+l+k++
  CCG93081.1 187 DELLKRLLSIVETLEKKK 204
                 6779***********986 PP

>> DUF4279  Domain of unknown function (DUF4279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.5     3e+03      31      70 ..      74     112 ..      61     116 .. 0.64
   2 ?    7.9   3.0    0.0028       3.3       5      72 ..     114     171 ..     111     209 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.5
     DUF4279  31 ptkkrkegsWelstgleesldleeqldklldrlepkaeki 70 
                 p + ++e +We+  +  +++   + l  ll  le +a+++
  CCG93081.1  74 P-PEKRELAWEWYMEHCQGEKPLDTLPGLLLLLEANAAYL 112
                 3.67778888888666667777777777777777777665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0028
     DUF4279   5 ldpeeitrlLglePtetsvkGdrisdptkkrkegsWelstgleesldleeqldklldrlepkaekike 72 
                   p+e++rlL+  Pt+ts+k+++     +   ++   +       ++ ++q+++++  l ++ ++i +
  CCG93081.1 114 TIPKEVSRLLQSLPTQTSTKDEEN----REAMKNFIAYL------ENYQKQIEEIIHTLADSHQEITK 171
                 5799*****************764....44455555555......34444555555555444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2235  (0.124658); expected 358.6 (0.02)
Passed bias filter:                     1371  (0.0764683); expected 358.6 (0.02)
Passed Vit filter:                       194  (0.0108205); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 1731.68
//
Query:       CCG93082.1  [L=275]
Description: Predicted ATPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.008   16.2   0.0      0.015   15.4   0.0    1.3  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain


Domain annotation for each model (and alignments):
>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.3e-07     0.015       7      99 ..      13     162 ..      10     187 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.3e-07
                 STTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................... RF
        CbiA   7 kGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep................................................... 54 
                 kG+vGK+t a   ++ ++ r+   +++D+D++   l+     e ++ +                                                   
  CCG93082.1  13 KGNVGKSTQASLQIFWMNARNVAWQAYDLDNDNQTLS-RAIPESRLVTlseepeadflkifrsipeksvtvldpqahfyrvllhsfdfahfldwskesg 110
                 9*******************************66655.3333333333666667779999999999999999999999999999999999999999999 PP

                 ..............CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHHHHH CS
                 ..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ..............dlkrllellealgkkkalllkiagvvlnrvdgeneetllkealee 99 
                                ++ l e++e++g ++        v+ nr + +  +t++ ++ + 
  CCG93082.1 111 irttvflfpvddlsVMDELAEIVEKFGDNVD-----YLVIKNRAKAP--KTRMFDGSQL 162
                 9999999999988888888888888888854.....66777777777..5555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2118.68
//
Query:       CCG93083.1  [L=452]
Description: Beta-propeller repeats containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3163.55
//
Query:       CCG93084.1  [L=479]
Description: putative cytosol aminopeptidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.6e-115  385.0   0.0   3.3e-115  384.6   0.0    1.1  1  Peptidase_M17    Cytosol aminopeptidase family, catalytic dom
    2.2e-12   46.9   0.0    4.7e-12   45.9   0.0    1.6  1  Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal do


Domain annotation for each model (and alignments):
>> Peptidase_M17  Cytosol aminopeptidase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.6   0.0  3.7e-119  3.3e-115       1     310 [.     160     466 ..     160     467 .. 0.96

  Alignments for each domain:
  == domain 1  score: 384.6 bits;  conditional E-value: 3.7e-119
                    HHHHHHHHS-TTTS-HHHHHHHHHHHHTCCTEEEEEEEECHHHHHTT-HHHHHHHTTSSSS--EEEEEEEE-SSTTSEEEEEEEEEEEEEE-TTSS CS
  Peptidase_M17   1 nlardlvntpaneltpeklaeeaeelakeagkvevevldeeeleekgmgallaVgkgSeeepprlveleykgakekekklalVGKGitfDtGGlsl 96 
                    n++r+l n+pan+++pe la +a ela++ + ++vev+d+e+le++g+g+l +VgkgS +++prl++l+y++a+   +++ +VGK+itfD+GG+s+
     CCG93084.1 160 NYVRSLGNMPANHVNPEVLALKAMELAQTRQGLRVEVFDGERLEKEGFGGLTSVGKGS-ANEPRLIVLDYQPAS-PLQPVLVVGKAITFDSGGISI 253
                    578*******************9998777778**************************.56***********97.99******************* PP

                    --HHHHTTGGGGGHHHHHHHHHHHHHHHHT-SSEEEEEEEEEEE--STTSTTTTEEEE-TTS-EEEES-TTGCHHHHHHHHHHHHHGCT--SEEEE CS
  Peptidase_M17  97 KpsasmeemkaDmgGAAavlgalkavaelklpvnvvavlplaeNmisgkavkpgdvitamnGktvevlnTDaEGRLvLADalayaeekekpdlivd 192
                    Kp+++m+emk+D++G++avlg+++av++l+lp++vv++l++aeNm+sgka++pgd+i+ + GktvevlnTDaEGR+vLADalay  ++++p+l++d
     CCG93084.1 254 KPGEHMDEMKYDKMGGCAVLGIMEAVSKLNLPIRVVGILAAAENMPSGKAYRPGDIIRIYGGKTVEVLNTDAEGRIVLADALAYGIDRFNPRLVFD 349
                    *************************************************************************************99********* PP

                    EE---THHHHHHTTTSEEEEES-HHHHHHHHHHHHHHS-EEEE----HHHGGGG--SSSSEESS-SSSSTHHHHHHHHHHTTSSECGEEEEE-TTT CS
  Peptidase_M17 193 vATLTgavvvalGkkaaglfsnddelaeelekageeagervwrlpleeeykkqlkskvaDlknvgkkrragaitAalFLkefvketpWaHlDiagt 288
                    +ATLTga++valGk+ aglfsn++ela+ l k +++ g+ +w+lpl ee++++++s+va +knvg+ r++ga+tAa+FL++ ++++pW+HlDiag+
     CCG93084.1 350 LATLTGACIVALGKQKAGLFSNRKELADFLWKNSADYGDPLWPLPLGEEFDEAITSDVALVKNVGG-REGGACTAAAFLQKWIGDIPWVHLDIAGP 444
                    ******************************************************************.999*************88*********** PP

                    TES.BTTB.S...EE--TTHHHH CS
  Peptidase_M17 289 alkekealkke.kgatGvgvrtL 310
                    a+ +ke  ++  kgatG+gvr++
     CCG93084.1 445 AWITKEL-PYLeKGATGFGVRLI 466
                    **54443.44349********87 PP

>> Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   5.2e-16   4.7e-12      27     126 .]      27     120 ..      20     120 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 5.2e-16
  Peptidase_M17_N  27 ellkegdftGkagevlvlralsgekakrvllVGLGkeeeltaealrkaagaaaralkgakvttiavalplegknsd..ekaeaaaegallglYr 118
                      e ++ ++f Gk+ + l+ r++      rv  VG+G+   ++ e++rkaag ++++l ++++t+i ++++   k+ d   +++a++ega lg+Yr
       CCG93084.1  27 EGVSPQEFDGKKLTGLLWREPW----GRVFYVGVGSHP-YSGETFRKAAGFGVKSLLKIGATEISIDFS---KQPDflPFVAAVVEGAILGSYR 112
                      5666678888888888887777....58*********9.8*****************************...777799**************** PP

  Peptidase_M17_N 119 fdrykskk 126
                      f+++k++k
       CCG93084.1 113 FEEFKEEK 120
                      *****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3497.05
//
Query:       CCG93085.1  [L=411]
Description: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-75  254.0   0.0    1.7e-75  253.7   0.0    1.1  1  LYTB      LytB protein


Domain annotation for each model (and alignments):
>> LYTB  LytB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.7   0.0   9.6e-80   1.7e-75       1     263 [.      53     395 ..      53     396 .. 0.90

  Alignments for each domain:
  == domain 1  score: 253.7 bits;  conditional E-value: 9.6e-80
                 EEE-TT-SS-HHHHHHHHHHHHHHCCC-S..EEECS-SSS-HHHHHHHHHCTEEEESS...........SSTEEEE-TT---HHHHHHHHHTTEEEEE- CS
        LYTB   1 illaksaGfCfGVerAieiaeealeekke..vyvlgeivHNeqvverLeekgvkfiee...........leevviirAhGvskeveeelkekglevvDa 86 
                 ++lak +GfC+GVerAi++a+ +++ +++  +y+lgei+HN++v+++L+++g+k ++             ++vvii+A+G++ e+++++++ g+++vD+
  CCG93085.1  53 VKLAKAFGFCYGVERAIDLAYATTKVFPTkrIYLLGEIIHNPEVNDQLTAMGIKRLQAvqgrysldgltADDVVIIPAFGAEVETMKRIQQIGCQIVDT 151
                 689************************999**************************88556666555432247************************** PP

                 --HHHHHHHHHHHHHHHCT-EEEEES-TT-HHHHHHHCCT.....--TEEEESSCHHHHHG................................CEEEEE CS
        LYTB  87 tCplVkkvqkevkklakegyeiviiGkkkHpEvegilgqa.....eekvvvveeseevekl................................kvalvs 148
                 tC  V  v+k+v+++ +eg + +i+Gk+ H+E++++++ a     + +++vv + ee +++                                +v++++
  CCG93085.1 152 TCGDVMTVWKRVRQYRNEGATSIIHGKAWHEETKATASRAigedgNGQYLVVYNLEETDYVcnyiryggdkqeflqkfkgavspgfdpdihlrHVGVAN 250
                 ***************************************544444455666658777655566679999999999999**************99***** PP

                 -TTS-HHHHHHHHHHHHHHST..........CEEEC-S--CHHHHHHHHHHHHHGH..SSEEEEES-TT-HHHHHHHHHHHHCSCTEEEESSGGG--.. CS
        LYTB 149 QTTlsveefeeivealkkklk..........elevkdtiCkatqeRqeavkelake..vdlvivvGgknSsNtkkLveiakeknkktyliesaeeld.. 233
                 QTT+ + e+ee+++ + k ++          +++++dtiC atqeRq+a+ ++ ++  +dl+ivvGg+nSsNt++L+ei + +  +ty+i++ae+l   
  CCG93085.1 251 QTTMMRGETEEVQRRICKAIEdrygkenlhkHFRFFDTICGATQERQDALLDMLDRekLDLLIVVGGYNSSNTSHLAEIGEGR-LPTYFIKNAEKLIss 348
                 ****************9998888888877767888****************99955479**********************99.66**********99* PP

                 ................HHHH.TT-SEEEEEE-TTS-HHHHHHHHHHH CS
        LYTB 234 ................eewl.egvkkvgitaGaStpeelieeviekl 263
                                 e wl eg  +vgitaGaS+p++liee i++l
  CCG93085.1 349 qqirhwnlhegrevitEGWLgEGEINVGITAGASCPNNLIEETIQRL 395
                 ***********99986669988999******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3146.09
//
Query:       CCG93086.1  [L=182]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        1.7    8.4   3.7          3    7.6   3.7    1.6  1  FA_desaturase  Fatty acid desaturase
        6.5    5.4   7.2        4.6    5.9   1.0    2.0  2  DUF2207        Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.7   0.00034         3     134     191 ..      92     152 ..       5     166 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00034
  FA_desaturase 134 k.......wrllawlllllawlglwlalllllglalllwlvplllllfllalvlnyveHyggdwg 191
                    k       w+l+a  l+++  l l+++ ++  g+   + + + ++++f+  ++  ++ H+gg  +
     CCG93086.1  92 KergeravWVLYAEGLFAV--LSLVALGIFPKGMN--FLGTATIIIGFAALFMTIWTGHAGGKIR 152
                    1333343577788888877..88888888889998..666666666666555559*****94443 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.5    0.0014        13     393     444 ..      27      75 ..       5      81 .. 0.70
   2 ?    5.9   1.0   0.00051       4.6     364     431 ..      80     142 ..      73     158 .. 0.45

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0014
     DUF2207 393 lglilillallllvlllvfllilllillliaiivlllfsrllgrrteeGael 444
                  gl l+   ll++++++v+ +  + +++l++ii+++ + +l++ + eeG++ 
  CCG93086.1  27 YGLGLA---LLTFIIGSVMKSRGVQAVGLVLIILTCASGWLVESYGEEGYDR 75 
                 222222...2233333888888888889999999999999999998888875 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.00051
     DUF2207 364 vkkkergyfdkkgkkklkklsalglgliilglilillallllvlllvfllilllillliaiivlllfs 431
                 v +ke+ ++d+ + ++  +   ++ + ++++++ ++++ ++      ++++l+++ ++i++++l++  
  CCG93086.1  80 VSDKEKAWLDAHK-ERGERAVWVLYAEGLFAVLSLVALGIF----PKGMNFLGTATIIIGFAALFMTI 142
                 4445666666553.222222222222222222222222222....45555555555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1173.66
//
Query:       CCG93087.1  [L=363]
Description: 6-phosphofructokinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.9e-100  335.3   0.4   3.4e-100  335.0   0.4    1.0  1  PFK         Phosphofructokinase
     0.0047   16.2   0.0     0.0078   15.4   0.0    1.3  1  NAD_kinase  ATP-NAD kinase
  ------ inclusion threshold ------
      0.085   12.5   0.2        0.3   10.7   0.1    2.1  2  DAGK_cat    Diacylglycerol kinase catalytic domain


Domain annotation for each model (and alignments):
>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.0   0.4  5.6e-104  3.4e-100       1     284 []       5     312 ..       5     312 .. 0.97

  Alignments for each domain:
  == domain 1  score: 335.0 bits;  conditional E-value: 5.6e-104
                 EEEEEEESS--TTHHHHHHHHHHHHHHTT-EEEEETTHHHHHHTT.-EEEE-SGGGTT-TT--S-TT-----GGGGSHHH...........HHHHHHHH CS
         PFK   1 riailtsGGdapGmNaairavvrtaikkglevygireGfeGliee.eiekltledvsgilsegGtiLgsaRskefkereg...........rkkaaenl 87 
                 ri++ltsGGd+pG+Naairavv +a   g+evyg+ +GfeGli   +++ l++ed +gi + gGtiLg++   +f ++ g           +++++e+l
  CCG93087.1   5 RIGVLTSGGDCPGLNAAIRAVVCSAELLGWEVYGFIDGFEGLISPvRYQILHEEDTQGIVALGGTILGTTNRGRFTTKTGigevlrlpkhlIDEVKETL 103
                 7******************************************9999999*******************9888998777799***************** PP

                 HHHT--EEEEEESHHHHHHHHHHHHT..T....--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHHT-EEEEEES-TT-THHHHHHHH CS
         PFK  88 kklgidaLvviGGdgslkganklseerkglleelkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstakshkrvfvvEvmGrncGwlAlmagl 186
                 + l+i aL+++GGdgsl++a++l eer      ++ivg+PkTidND+  tdy++Gf++A++ +++a+d+l++ta+sh+rv+vvEvmGr+ Gw+Al++gl
  CCG93087.1 104 EGLEIGALICVGGDGSLTAAQQLYEER------VPIVGVPKTIDNDLSATDYSFGFYSAVEFVCRAMDRLRTTAASHRRVMVVEVMGRYTGWIALYGGL 196
                 ************************995......9***************************************************************** PP

                 HHT-SEEE-TTS---HHHHHHHHHHHHT.T-S-EEEEEESSS..S-.....................HHHHHHHHHHHHSS-EEEEE-GGGGG-S---H CS
         PFK 187 aggadvilipEepfdieeliekikklrkkgkkksiivvaEgakdkeg..................iiaeelakeieektgievrvtvlGhlqrGgspsa 267
                 agga+vilipE+pf+ e+++ +i+++ ++g+++++ivvaEga+ k++                  +i+++l+k+i + tg+e+r+ vlGhlqrGg+p+a
  CCG93087.1 197 AGGANVILIPEIPFEYEKIAYHIRRRIAEGSHQTMIVVAEGAHPKDEqyyileeeanikkearfgGIGRHLEKVIMKMTGQETRAVVLGHLQRGGEPTA 295
                 ***************************99**************6666789999**********************999********************* PP

                 HHHHHHHHHHHHHHHHH CS
         PFK 268 fDrilatrlGikavell 284
                 fDr+l+  +G++av+l+
  CCG93087.1 296 FDRNLGMMFGAAAVDLI 312
                 **************986 PP

>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.3e-06    0.0078      78     109 ..     107     137 ..      72     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-06
                 SSSEEEEEE-HHHHHHHHHHHHHCT-EEEEEE CS
  NAD_kinase  78 gvdliivvGGDGTaldvarllqkaeiPvlgvn 109
                 ++ ++i vGGDG  +++ +l ++ ++P++gv+
  CCG93087.1 107 EIGALICVGGDGSLTAAQQLYEE-RVPIVGVP 137
                 56789********9999999995.*******9 PP

>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.56   3.3e+03      52      64 ..      56      68 ..      52      76 .. 0.80
   2 ?   10.7   0.1   5.1e-05       0.3      49      97 ..     100     145 ..      82     177 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.56
                HHCC-SEEEEEES CS
    DAGK_cat 52 keegvdlivvaGG 64
                 ee++++iv++GG
  CCG93087.1 56 HEEDTQGIVALGG 68
                4567899999998 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 5.1e-05
                 HHHHHC.C-SEEEEEESHHHHHHHHHHHCTHHCTTSEEEEEE-SS--HHH CS
    DAGK_cat  49 keakee.gvdlivvaGGDGtvsevlnglleelatkpplgiiPlGtgNdla 97 
                 ke  e  ++ +++++GGDG + + +++l e   +++p+  +P    Ndl+
  CCG93087.1 100 KETLEGlEIGALICVGGDGSLTA-AQQLYE---ERVPIVGVPKTIDNDLS 145
                 33333246699*********975.677888...78888888877777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2552.20
//
Query:       CCG93088.1  [L=161]
Description: Peroxiredoxin [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-31  107.5   0.0      6e-31  106.9   0.0    1.2  1  AhpC-TSA  AhpC/TSA family
    4.4e-24   84.9   0.0      5e-24   84.7   0.0    1.0  1  Redoxin   Redoxin


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.0   6.7e-35     6e-31       1     123 [.       5     135 ..       5     136 .. 0.94

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 6.7e-35
                 TTSB----EEE...STTCEEEECHHH.TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHH CS
    AhpC-TSA   1 vgdkapdfelk...nadgetvslsdy.kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkva 95 
                 vg  apdf+l     +  ++v+l++  +++ vvl+f+p++++pvCt+e++ + + ++e++++ ++v+g+svd+p+++++++++e++++pllsD ++ v+
  CCG93088.1   5 VGSLAPDFTLSskyPEGIKQVHLKEElAQNNVVLLFFPMAFTPVCTQEMCTMTASINEYAQLQAKVFGISVDNPFAQEAWAKHEGIKIPLLSDLNKVVC 103
                 7899*******6665567*****6665889********************************************************************* PP

                 HHTT-EETT....TTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  96 kaygvlkee....kglalratfvidkegkiry 123
                 kay+vl +       +a ra+++id+++ iry
  CCG93088.1 104 KAYDVLLPGligiGDVAARAVYLIDRNQQIRY 135
                 ******999**********************9 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   5.5e-28     5e-24       2     139 ..       5     147 ..       4     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 5.5e-28
                 TTSBB---E.CCEETTCEEEEEHHH.HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH.TT-TSEEEE-TTSHH CS
     Redoxin   2 agdkaPdft.lplaatdgnsvslse.fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk.eglkfpvlsDgsaaf 97 
                 +g+ aPdft   + +++ ++v+l+e ++ ++vv+ f+p af+P+C++e++ ++   +++++   +v+++++ +++f++e+w+k eg+k+p+lsD ++ +
  CCG93088.1   5 VGSLAPDFTlSSKYPEGIKQVHLKEeLAQNNVVLLFFPMAFTPVCTQEMCTMTASINEYAQLQAKVFGISV-DNPFAQEAWAKhEGIKIPLLSDLNKVV 102
                 899******6345678899*******************************777777777999999988866.569999999999*************** PP

                 HHHTT-TTEEE.GGG.EEE-EEEEEEETTEEEEEEESSSCHT..S CS
     Redoxin  98 tkalGlrleedaseg.lrtpryavidedgkvvylevepepet..e 139
                  ka+++ l    + g ++++++ +id++++++y+ev p p +   
  CCG93088.1 103 CKAYDVLLPGLIGIGdVAARAVYLIDRNQQIRYVEVTPTPLElpS 147
                 *****7766665555**********************99866444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1252.04
//
Query:       CCG93089.1  [L=709]
Description: polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-45  155.1   0.0    6.1e-22   78.5   0.0    2.3  2  RNase_PH    3' exoribonuclease family, domain 1
    1.3e-15   57.1   0.0    3.1e-10   39.9   0.0    2.6  2  RNase_PH_C  3' exoribonuclease family, domain 2
    2.5e-13   49.6   1.1    6.8e-13   48.2   0.5    2.1  2  KH_1        KH domain
    6.2e-12   45.7   1.9    1.3e-11   44.7   1.9    1.6  1  S1          S1 RNA binding domain
    2.3e-11   44.0   0.0    5.7e-11   42.8   0.0    1.7  1  PNPase      Polyribonucleotide nucleotidyltransferase, RNA bi
     0.0004   20.2   1.9    0.00059   19.6   0.7    1.9  2  KH_2        KH domain
     0.0034   17.3   0.0     0.0059   16.5   0.0    1.4  1  SLS         Mitochondrial inner-membrane-bound regulator
  ------ inclusion threshold ------
      0.031   14.1   0.1        0.1   12.5   0.1    1.8  1  KH_4        KH domain


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   2.7e-25   6.1e-22       4     132 .]      15     144 ..      13     144 .. 0.94
   2 !   74.3   0.0   5.4e-24   1.2e-20       2     132 .]     324     457 ..     323     457 .. 0.91

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 2.7e-25
                 EEEEEES.SSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG.--CCEEEECCCCECCCCEC-C........S...HHHHHHHHHHHHHHCCTC-CCGC CS
    RNase_PH   4 slsietg.vlsqanGSaylelGdtkvlasvtgpieerpseer.ddaegaldveveyapfasger.....rregrpsdeeielsrlleralrpsillekk 95 
                 s+ +etg +++ a+GS+ +++G+t vl++v   +e    +e+ d+ +  l+ve++ +  a+g++     r+egrp+d+ei++sr+++r lrp++++  +
  CCG93089.1  15 SIIFETGkLAKMADGSVTVSYGETAVLVTVVSVTEL---KEEqDFLP--LQVEYREKAAAAGRFpggyfRKEGRPTDKEILTSRMIDRPLRPLFPTGYF 108
                 67789**99*************************99...45449999..***********************************************988 PP

                 CTCEEEEEEEEEECCC.S-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  96 pkstididitvlssdg.gslldalinaaslALadagip 132
                   ++ +i  t+ls+dg + +  ++in+as+AL+ +++p
  CCG93089.1 109 --YETQILGTLLSADGqNDPDILAINGASAALMLSDVP 144
                 ..9*************9999*************99998 PP

  == domain 2  score: 74.3 bits;  conditional E-value: 5.4e-24
                 EEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG--CC.....EEEECCCCECCCCEC-C...S......HHHHHHHHHHHHHHCCTC-C CS
    RNase_PH   2 lRslsietgvlsqanGSaylelGdtkvlasvtgpieerpseerddae.....galdveveyapfasgerrregr...psdeeielsrlleralrpsill 92 
                 +R+++iet + ++++GSa+++ G+t+ l+  t+ +  +++e  d ++     +++ +++ ++pf+ ge     +   +s++ei    l er+l p+i+ 
  CCG93089.1 324 IRPITIETSIFPRSHGSALFSRGETQALCMATLASLNEAQEL-DAYGggeqsKRFLLHYFFPPFSVGEVG---KvfgQSRREIGHGALAERSLVPVIPS 418
                 8**********************************6633333.65557888789***************4...4455********************** PP

                 CGCCTCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  93 ekkpkstididitvlssdggslldalinaaslALadagip 132
                 e    + i+++ ++l+s+g s+ +a +++ slAL+dag+p
  CCG93089.1 419 ETDFPYAIRVSSEILESNG-STSMATVCGGSLALMDAGVP 457
                 **999**************.******************99 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.4e-13   3.1e-10       1      66 [.     147     210 ..     147     211 .. 0.94
   2 !   14.6   0.0   1.1e-05     0.024       3      66 ..     462     535 ..     460     536 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.4e-13
                 S--EEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSC.EEHHHHHHHHHHHHH CS
  RNase_PH_C   1 apviavtvgkvddqfvlDptkeEedlsegdltlavagtkevvtlmkeggsq.ldeetlleaielAkk 66 
                 +pv+av++g +d+  +l+pt  E   + +d++l+++g++    lm+eg++  ++ee++++a+ +A++
  CCG93089.1 147 GPVGAVRIGQIDGRWILNPTHRE--REISDVDLVYVGSEHY-PLMIEGSAReFPEEEFIKALAFAHQ 210
                 59*********************..5555*******99998.***********************96 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.1e-05
                 -EEEEEEEETTE..........EEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSC..EEHHHHHHHHHHHHH CS
  RNase_PH_C   3 viavtvgkvddq..........fvlDptkeEedlsegdltlavagtkevvtlmkeggsq..ldeetlleaielAkk 66 
                 v++++vg+v +           ++ D    E++++  d+++ +agtk+ +t  +++ +   ++ e +++ai ++k+
  CCG93089.1 462 VAGISVGLVKGGeddfdwshycLLTDIIGLEDHYG--DMDFKIAGTKKGITGFQLDLKLkgIPLEVMEKAIFMSKR 535
                 899******755567888889999*******9999..*******************98889***********9986 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.5     3e-16   6.8e-13       2      66 .]     563     621 ..     562     621 .. 0.92
   2 ?   -2.0   0.0       1.5   3.4e+03      28      50 ..     641     658 ..     639     664 .. 0.68

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 3e-16
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEE.SHHHHHHHHHHHHH CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedegsderevtisG.speavekAkeliee 66 
                 ++i+++ +++g++IG+gG++Ik+I +e+ga I+++       d+ +v i   s+e+ e A+++ie+
  CCG93089.1 563 EKIKIHPDKIGLLIGPGGKTIKRISAESGAEITIE-------DDGTVLIYSsSAESLESARAMIED 621
                 689******************************76.......35699**888************86 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.5
                 HHT-EEEEESSTT...T.-EEEE CS
        KH_1  28 etgakIkvpksedegsderevti 50 
                 + g+ I +  ++    +e  v+i
  CCG93089.1 641 DFGCFIEIK-GK----GEGLVHI 658
                 469999977.43....3556666 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   1.9   5.8e-15   1.3e-11       4      73 ..     628     695 ..     625     697 .. 0.91

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 5.8e-15
                 TTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEE CS
          S1   4 kgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriils 73 
                 +g  +  +V+sv ++G f+e+ ++ eg+v++sels+   v+  d+v++vG+e+ vk ++vd++ r   +s
  CCG93089.1 628 VGGLYRSKVVSVKDFGCFIEIKGKGEGLVHISELSDT-PVRRVDQVVRVGEEIWVKCIGVDEKGR-YKFS 695
                 6777899*****************************9.************************987.6665 PP

>> PNPase  Polyribonucleotide nucleotidyltransferase, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   2.5e-14   5.7e-11       2      82 ..     242     319 ..     241     320 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 2.5e-14
                 HHHHHHTTTHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHH...HHSTTS-HHHHHHHHHHHHHHHHHHHHHHTS-TTTS- CS
      PNPase   2 leekvaelaeerisealtiteKqeRyaaldeikekvveafaaeleeedeedekeikeifkalekkvvRsrildegvRiDGR 82 
                 + + +a+l++ +i+eal++ +K  R + l +ik++++e+++++     + ++ ei   f+ l+ ++ R+++l+++ R DGR
  CCG93089.1 242 ITKWIADLFSHQIEEALYVPSKTLRHNSLAKIKQEITEKIIQSF---PQATPMEISWSFDLLQREIFRRNVLTTQKRCDGR 319
                 67889************************************555...789******************************* PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.7   2.6e-07   0.00059      19      62 ..     554     597 ..     539     607 .. 0.79
   2 ?   -3.3   0.0       3.6   8.2e+03       8      33 ..     646     675 ..     644     677 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.6e-07
                 EEECCS.CEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHH CS
        KH_2  19 eIerta.nrviiviresqpgivIGkgGsnikkigkelrkdiekle 62 
                 eI ++a +  +i i+  + g++IG gG++ik+i +e + +i  +e
  CCG93089.1 554 EISKHApRIEKIKIHPDKIGLLIGPGGKTIKRISAESGAEIT-IE 597
                 5555442556799*************************9995.43 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.6
                 HHTECETEEEEEEEC...CS.CEEEEEEEE CS
        KH_2   8 veikkagvskveIer...ta.nrviivire 33 
                  eik++g + v+I +   t+ +rv  v+r+
  CCG93089.1 646 IEIKGKGEGLVHISElsdTPvRRVDQVVRV 675
                 578888888888876666666777777766 PP

>> SLS  Mitochondrial inner-membrane-bound regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.6e-06    0.0059      28      93 ..     556     628 ..     537     685 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.6e-06
         SLS  28 e.......evklsprefflLltgngklLqnlsrihgakielnrsenklritAtkstaeyieasineilknitt 93 
                 +       ++k+ p+++ lL+++ gk ++ +s + ga+i++  +   l+ ++++++ e+++a i++++  +t+
  CCG93089.1 556 SkhaprieKIKIHPDKIGLLIGPGGKTIKRISAESGAEITIEDDGTVLIYSSSAESLESARAMIEDMVGEVTV 628
                 044444448********************************9887777777****************999987 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.5e-05       0.1      29      52 ..     561     584 ..     540     586 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.5e-05
        KH_4  29 veielnvegedlGrvIGkrGrtld 52 
                 +  +++++++++G++IG  G+t++
  CCG93089.1 561 RIEKIKIHPDKIGLLIGPGGKTIK 584
                 45589*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 4415.92
//
Query:       CCG93090.1  [L=88]
Description: 30S ribosomal protein S15 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-32  111.8   6.3    1.4e-32  111.7   6.3    1.0  1  Ribosomal_S15  Ribosomal protein S15


Domain annotation for each model (and alignments):
>> Ribosomal_S15  Ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   6.3   8.1e-37   1.4e-32       1      81 []       7      87 ..       7      87 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 8.1e-37
                   HHHHHHHHSSSTT-TSSHHHHHHHHHHHHHHHHHHHHCTTT-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCTST CS
  Ribosomal_S15  1 kkelikefqrhekDtGspevqiallterInnltehlkenkkDkhsrrgLlklvskRrkllkYLkrkdverYkklieklglr 81
                   k++li++f+ hekDtGs+ vqiallt++I++lt hlk+n+kD++srrgLl++v++Rrkll+YL r++ e+Y++++++l+lr
     CCG93090.1  7 KHKLIEQFRLHEKDTGSAVVQIALLTNKIQRLTTHLKKNSKDHSSRRGLLRMVNRRRKLLNYLNRTEPEKYREMLNRLSLR 87
                   7899**************************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       968  (0.0539907); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 675.86
//
Query:       CCG93091.1  [L=245]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-10   38.5   0.0    8.4e-08   32.2   0.0    2.1  2  DUF4412   Domain of unknown function (DUF4412)
  ------ inclusion threshold ------
      0.069   12.5   0.0       0.16   11.3   0.0    1.7  1  DUF2092   Predicted periplasmic protein (DUF2092)
       0.54   10.1   5.1       0.73    9.7   5.1    1.1  1  DUF2955   Protein of unknown function (DUF2955)
          1    9.4   4.0       0.33   11.0   0.7    1.9  2  RAMP4     Ribosome associated membrane protein RAMP4


Domain annotation for each model (and alignments):
>> DUF4412  Domain of unknown function (DUF4412)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.9e-11   8.4e-08       7     122 ..      66     175 ..      64     177 .. 0.88
   2 !    5.5   0.1     0.003        14     154     191 .]     176     211 ..     172     211 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1.9e-11
     DUF4412   7 mkltap.kgesemtyflgkekqRmemsvqlkkipeklkttvltkakkpdelyilnekaktYseidlkeaaesaalldadsdytveklGketikGYsCeh 104
                 m+++    ge  +++f+ ++k+R+e  +  ++     ++ ++ k+kk  ++y+l +++++Y e+ +ke++   ++   d  ++ + +G++t++G  C++
  CCG93091.1  66 MQIIKVgGGEIVQKIFVDGDKIRVEGPTGVQQ-----QINIIRKDKK--TIYTLFPDERIYFEHPVKEETPLFDITPGDPTAKWTSVGTDTLQGVLCDK 157
                 555555466778899**********9999887.....6668888888..*****************88888888888999******************* PP

     DUF4412 105 vritskeetlelWvtkdl 122
                 + ++sk ++  +W+ k+ 
  CCG93091.1 158 YLMESKAGKATFWIGKET 175
                 **************9985 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.003
     DUF4412 154 GFPvkivqkneggevvmelvkiekksldaslFevPagY 191
                 G Pv+i+ ++ +  v +e    +  +++++lF vP++Y
  CCG93091.1 176 GAPVQIMPEKGN--VLVEWKDYKVGPQPEELFVVPSNY 211
                 789999999988..99********************99 PP

>> DUF2092  Predicted periplasmic protein (DUF2092)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.6e-05      0.16     127     160 ..     142     175 ..      60     183 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.6e-05
     DUF2092 127 akyvgtskvngqecehlafrnkdvdwqlWIsqgd 160
                  + vgt++++g+ c+++++++k  +  +WI+++ 
  CCG93091.1 142 WTSVGTDTLQGVLCDKYLMESKAGKATFWIGKET 175
                 5679**************************9875 PP

>> DUF2955  Protein of unknown function (DUF2955)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.1   0.00016      0.73      61     123 ..       2      64 ..       1      73 [. 0.87

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00016
     DUF2955  61 lllvellqhyPvlmtllvflllllkfrlmsrgskflfgamlvislsillvfasydttdvedli 123
                 l+++ ll    + ++l v+ lll+k ++m+r + fl++ ++ ++ s  ++fa+ ++++  ++ 
  CCG93091.1   2 LVIITLLNLKLFHYLLEVVFLLLYKKEMMKRVGLFLLAVFSFVVSSSFVAFAQRPFSLPKQFS 64 
                 5666777777778899999************************************99887775 PP

>> RAMP4  Ribosome associated membrane protein RAMP4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.7   7.4e-05      0.33      29      53 ..      26      50 ..      22      51 .. 0.87
   2 ?   -3.4   0.1       2.4   1.1e+04      27      34 ..     229     237 ..     220     241 .. 0.42

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.4e-05
       RAMP4 29 kkekkspvgpwlLglfiFVViGSai 53
                kke  + vg +lL++f FVV  S++
  CCG93091.1 26 KKEMMKRVGLFLLAVFSFVVSSSFV 50
                7888899*************88875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.4
       RAMP4  27 lk.kkekks 34 
                  + k++   
  CCG93091.1 229 PSeKQKPPI 237
                 222343333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1688.74
//
Query:       CCG93092.1  [L=148]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1007.31
//
Query:       CCG93093.1  [L=319]
Description: Methionyl-tRNA formyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-40  138.4   0.0    3.3e-40  137.7   0.0    1.3  1  Formyl_trans_N  Formyl transferase
    1.4e-28   99.1   0.4    7.4e-28   96.7   0.1    2.3  3  Formyl_trans_C  Formyl transferase, C-terminal domain
  ------ inclusion threshold ------
      0.058   13.3   0.1       0.11   12.4   0.1    1.4  1  tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codo


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.0   5.6e-44   3.3e-40       1     180 [.       1     180 [.       1     181 [. 0.95

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 5.6e-44
                     -EEEEEESESSHHHHHHHHHHHHTTSECEEEEEEESCTTEHCHHHHHHCCHCCCECHHCC...SCCCCCCCHHHHHHHHCTT-SEEEEES--S-- CS
  Formyl_trans_N   1 kkivvlisgtgsnlqalldalkkgsleadvvlvvsnkdkaaglekaeaasiptkvfeekk...leprsqfeeelaeelkelkadlivlagymkll 92 
                     +++v++  gtg++    l+a    +   ++  v+++ d++ g++k   +s+ ++++ + +   ++p++      +++++ lk+++iv+  y+++l
      CCG93093.1   1 MRVVFI--GTGDFGVPSLEAIALDGRY-TIPGVITQADRPFGRQKELLPSPIKRAALKLHlwvFQPENINSAGSIQQIQFLKPEVIVVCDYGQIL 92 
                     789999..9999999999999988875.9********************99888887777999******************************** PP

                     -HHHHHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N  93 pkelvqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehkalvea 180
                     +ke+++ ++ +ilniH+SLLP+++Ga++iq+a+++ dketGvt+ ++de++DtG+il  +k+ i  +dt+e+l +r+a+++ +++++ 
      CCG93093.1  93 SKEVLKIPSIGILNIHGSLLPKYRGASPIQAAIKNMDKETGVTVIWMDEGIDTGDILTSEKLLIRSNDTAESLHDRLAELGARLIIQS 180
                     ********************************************************************************99999875 PP

>> Formyl_trans_C  Formyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         2   1.2e+04      61      77 ..      75      91 ..      55      97 .. 0.59
   2 ?   -0.7   0.0      0.29   1.7e+03       2      21 ..     149     168 ..     148     172 .. 0.88
   3 !   96.7   0.1   1.2e-31   7.4e-28       1      99 [.     204     305 ..     204     306 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2
                    EETT..TEEEE-SBSEE CS
  Formyl_trans_C 61 vavdkggllvacgdgal 77
                    +++ k +++v c  g +
      CCG93093.1 75 IQFLKPEVIVVCDYGQI 91
                    33445567777774444 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.29
                     .-GGGGB--TTSBHHHHHHH CS
  Formyl_trans_C   2 ikkedgridwnqsaeeihnl 21 
                     +++e+ +i  n++ae++h++
      CCG93093.1 149 LTSEKLLIRSNDTAESLHDR 168
                     67899999*********987 PP

  == domain 3  score: 96.7 bits;  conditional E-value: 1.2e-31
                     ..-GGGGB--TTSBHHHHHHHHHHT-TS--EEEEE....TTEEEEEEEEEEE-S--SS-.TTSEEETT..TEEEE-S.BSEEEEEEEEETTS--E CS
  Formyl_trans_C   1 kikkedgridwnqsaeeihnlvrglspwPgayttl....ngkrvkllkaevvsesssaespGtivavdkggllvacg.dgallilelqlegkkam 90 
                     kikke+++idw+++ +ei+++vr+++pwP ayttl    ++k +k++k+ + +++ + + pG++v++dk+g+lva g  g ll++e+qleg+k+m
      CCG93093.1 204 KIKKEEALIDWTKDKQEIDAMVRAFNPWPVAYTTLkigeEKKILKIYKVIISHRARG-S-PGEVVRIDKHGVLVAAGrVGGLLLREVQLEGRKKM 296
                     8**********************************9887777889999977754443.4.*****************99**************** PP

                     EHHHHHHH. CS
  Formyl_trans_C  91 saedflngl 99 
                     +a+df++g+
      CCG93093.1 297 HAADFARGA 305
                     *******97 PP

>> tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.9e-05      0.11      10     124 ..     120     229 ..     118     248 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
  tRNA-synt_1c_C  10 pvkvtienlpegkeeelevplhpknpelgtrkvpfskeiyiereDakrlkpgeevrLkelynikveevekdesgevtelkleydgesleea.rkk 103
                     p++  i+n+++    e  v ++  ++  +t ++  s++++i  +D  +   ++   L    +i+  e    ++g+  ++  +    s++++ +k+
      CCG93093.1 120 PIQAAIKNMDK----ETGVTVIWMDEGIDTGDILTSEKLLIRSNDTAESLHDRLAELGARLIIQSLEAI--KAGKAPRIPQDHALASYAKKiKKE 208
                     77788887763....44455555566888999*************555555666666665555553333..456666655566666666663566 PP

  tRNA-synt_1c_C 104 kgiihWvsaeeaveaevrlYd 124
                     ++ i W +++++++a vr ++
      CCG93093.1 209 EALIDWTKDKQEIDAMVRAFN 229
                     66*************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2401.64
//
Query:       CCG93094.1  [L=326]
Description: putative translation factor SUA5 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-54  182.8   0.0    6.8e-54  182.1   0.0    1.4  1  Sua5_yciO_yrdC  Telomere recombination
    1.3e-19   71.1   0.0    2.2e-19   70.3   0.0    1.4  1  SUA5            Putative GTP-binding controlling metal-bindin


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.1   0.0   7.6e-58   6.8e-54       1     179 []      19     195 ..      19     195 .. 0.98

  Alignments for each domain:
  == domain 1  score: 182.1 bits;  conditional E-value: 7.6e-58
                     HHHHTTSEEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-TC--HHHHHHHHCT-SSSCEEEEE..E-TS-HHHHT CS
  Sua5_yciO_yrdC   1 ealrkGgivaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklaeseveeealkllerfwPGpitlllkrskeklpkevap 95 
                     e+lrkG++vaiptetvYgLa+da n+eav+rl+e+K+rp+  p++v++   +++ ++++ +++e a  l+  +wPGp+tl+l++ k+++p+ v++
      CCG93094.1  19 ELLRKGEVVAIPTETVYGLAADALNSEAVARLFELKKRPKIDPVIVHCYGASHVFAFVR-NLPEPARLLATTYWPGPLTLVLEK-KDSIPDIVSA 111
                     589*******************************************************9.***********************7.555******* PP

                     TTTEEEEEE-SSHHHHHHHHHCTS-EEEEES-STTS-S-SSHHHHHHHC-TTSECB-SS---SSS---EEEETTSSTSSECEXX CS
  Sua5_yciO_yrdC  96 glktvGvrlPdtplarlLlealgeplvaTSanlsgepsitdaeeveeelgeivdlildggeiavgvdstVvdltegkpkilRrG 179
                     gl   G+r+P++pl+++L+e+lg+pl+a+San+ g+ s+t+a++v ee+++ + lildgg++ vg++stV+++  ++p +lR G
      CCG93094.1 112 GLPFAGFRVPKHPLTLKLIEKLGRPLAAPSANRFGKISPTTAQAVFEEFNHLIPLILDGGPCPVGIESTVISFAHDPPLLLRYG 195
                     **************************************************************************99******76 PP

>> SUA5  Putative GTP-binding controlling metal-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   2.5e-23   2.2e-19       1     134 []     197     322 ..     197     322 .. 0.82

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 2.5e-23
                 .-HHHHHHHS-..--.....-------------S-SSEEEEE--GGGHHHH.....HHHHHTTS-EEEEEEGGGTGGTSEEEEE..E-TT-HHHHHHHH CS
        SUA5   1 itleeleevld..avek.keekpraPGmkyrHYaPkapvvlveaeeeeeaakeekleekkksgkkvgvlatseskeaassvlslslgsrsdleeaarnL 96 
                 it+ee+e+ ++  +v + +++   aPG   +HYaP++pv ++++ +e              + k+ g++  +++++   +v+++ l ++++l eaa+n 
  CCG93094.1 197 ITKEEIEKRIGplTVPApNTAWNLAPGRFPKHYAPSVPVEIISSLSEIPYW----------KRKNAGLIFWGREETSGFKVVKN-LSKEKSLIEAAANF 284
                 89******9965544444566669******************999988764..........56666777755555554444444.5789********** PP

                 HHHHHHHHHS--SEEEEE----STTHHHHHHHHHHHTT CS
        SUA5  97 FaaLrelDeegvdlilvegvpeeglglAvmnRLrkAAg 134
                 F++LrelD++ ++ i++  +peeglg+A+++R++kAAg
  CCG93094.1 285 FQMLRELDKSSIEKIYALLLPEEGLGKAINERIKKAAG 322
                 ********99***************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2494.94
//
Query:       CCG93095.1  [L=868]
Description: DNA gyrase subunit A [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     9e-146  486.1   0.0   1.4e-145  485.5   0.0    1.2  1  DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
    2.6e-73  241.3  19.1    4.8e-15   54.8   0.4    6.6  6  DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller
  ------ inclusion threshold ------
      0.057   13.7   0.1        1.8    8.9   0.1    2.8  3  AAA_22         AAA domain
       0.24   10.8   0.0       0.88    9.0   0.0    1.8  2  Ldi            Linalool dehydratase/isomerase


Domain annotation for each model (and alignments):
>> DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  485.5   0.0    3e-149  1.4e-145       1     421 [.      43     498 ..      43     505 .. 0.97

  Alignments for each domain:
  == domain 1  score: 485.5 bits;  conditional E-value: 3e-149
  DNA_topoisoIV   1 RaiPsvrDGlKPvqRriLyamfkl.lnldkkekKvaqlvGevlgkYhPHGdaslydaivrlaqdfvgniplldpqGnfGsildgdkdAaaRYietr 95 
                    Ra+P+vrDGlKP+qRriL+am++l l +++k+ K+a++vGe++g++hPHGd+++y ++v++aq ++++  l+d+qGnfGsi +gd++Aa+RY+e+r
     CCG93095.1  43 RALPDVRDGLKPSQRRILFAMHELgLAPNRKHLKCAKIVGETMGNFHPHGDQAIYPTLVHMAQPWAMREVLIDGQGNFGSI-EGDPPAAMRYTEAR 137
                    9********************************************************************************.************** PP

  DNA_topoisoIV  96 LskiarellkeidketvdyqenyDgsekEPevlppiiPnlLvnGaeGIavGmatkipphnlkeiidaliallkgeea...ellelvlgPdfptggg 188
                    Ls+    l+++++k+tvd+++nyD+++ EP v+p+++Pnl+vnG +GIavGmat+ipphnl+e idal+al++++     +ll++++gPdfptgg+
     CCG93095.1 138 LSPAGALLMADMEKDTVDFVPNYDETKMEPAVFPAAFPNLIVNGGTGIAVGMATNIPPHNLSETIDALVALIDQPGLsaeDLLQYIQGPDFPTGGV 233
                    ***************************************************************************88999**************** PP

  DNA_topoisoIV 189 iigkeeikeayetgrGkikvrakveie.....ektivitElPigvntskliekieelvkkkkik.isdirdesdrgvrivielkrgaseekvlekl 278
                    i+gke+i + ++tgrG++kvr++v++e     +++i+i E+P++vn ++l+eki elv++k i  i+dirdesd+++r+vielkr+a +++v+++l
     CCG93095.1 234 ILGKEGIVSYFTTGRGSLKVRGEVHFEelrggKSAIIIDEIPYNVNRAALVEKIGELVNQKIIPeIADIRDESDENTRVVIELKRDAIPKVVINNL 329
                    ******************************955*************************************************************** PP

  DNA_topoisoIV 279 ykktkLessisvnnlvlfdkkpkylslkeilkeflevrlevyerrkeyllekleerleilegllkalnkidevievirkskkekkakkeLiee.ls 373
                    yk+t L+++++vn++++++ +pk l+lke+l  +l++r+ev+ rr++++l+k+ er+eileg+l+al+++++ i +ir+s ++++a+k+L+e  + 
     CCG93095.1 330 YKHTPLQTTFAVNMVAIDRLRPKSLNLKELLFCYLDHRHEVVVRRTRFDLNKALERAEILEGFLIALSQLEDFIRLIRESTNREEARKKLLELkFP 425
                    ************99999988**************************************************************99999999997733 PP

  DNA_topoisoIV 374 e.........................eqaeyllemrlrrLtkeeveklekeieelekeikelekllaklkkli 421
                                              +q+e++l++rl++Lt +e+ k+ +e++el ++i++++++l + +k++
     CCG93095.1 426 VrlletlgiviaqdriteegvyslslRQVEAILDLRLYQLTGLERGKIASEYAELLEKIEQFKAILGSEEKIW 498
                    345668************************************************************9955555 PP

>> DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   5.1e-13   2.3e-09       3      36 ..     539     572 ..     537     586 .. 0.92
   2 !   32.2   0.0   1.2e-11   5.4e-08       1      46 [.     593     641 ..     593     642 .. 0.97
   3 !   40.0   0.0   4.3e-14   1.9e-10       1      45 [.     660     702 ..     660     705 .. 0.95
   4 !   54.8   0.4   1.1e-18   4.8e-15       2      48 .]     709     755 ..     708     755 .. 0.97
   5 !   37.1   1.1   3.5e-13   1.5e-09       3      47 ..     760     805 ..     758     805 .. 0.95
   6 !   48.7   0.7   8.3e-17   3.7e-13       1      47 [.     809     855 ..     809     855 .. 0.97

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 5.1e-13
                    EEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETT CS
  DNA_gyraseA_C   3 llliTsnGyvkrfplselpeqgRgakGvkgiklk 36 
                    +++ T+nG++kr++l+ +++q+Rg++Gv g+ + 
     CCG93095.1 539 VITLTHNGFIKRTNLDNYRSQRRGGRGVVGMATQ 572
                    799****************************664 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 1.2e-11
                    SEEEEEETTSEEEEEEGGGS-BT-TTSCTEEGS...ETTTTSSEEEEEE CS
  DNA_gyraseA_C   1 dellliTsnGyvkrfplselpeqgRgakGvkgi...klkegdklvsvlv 46 
                    d+ll++T  G+v+  +++elpe+ R++kG+ ++    lk+ +++ s+l 
     CCG93095.1 593 DYLLFFTTDGRVYIQRVYELPEKERASKGKNIVnflELKPTEEIASMLR 641
                    8*********************************************986 PP

  == domain 3  score: 40.0 bits;  conditional E-value: 4.3e-14
                    SEEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEE CS
  DNA_gyraseA_C   1 dellliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvl 45 
                    d++++ T++G+vk++p+ ++ ++++g  G+++i ++e+dkl++ +
     CCG93095.1 660 DYIFFCTKKGRVKKTPVTDFQNIRKG--GITAISIDENDKLIDCM 702
                    8*************************..*************9876 PP

  == domain 4  score: 54.8 bits;  conditional E-value: 1.1e-18
                    EEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEEES CS
  DNA_gyraseA_C   2 ellliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvlvvs 48 
                    e++liT+ G+ +rf++  ++++gR+a Gv+gi+l+egd++v+++vv+
     CCG93095.1 709 EIVLITKEGQSIRFSETLVRSMGRNAAGVIGINLREGDEVVGAAVVD 755
                    89*******************************************95 PP

  == domain 5  score: 37.1 bits;  conditional E-value: 3.5e-13
                    EEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTT.SSEEEEEEE CS
  DNA_gyraseA_C   3 llliTsnGyvkrfplselpeqgRgakGvkgiklkeg.dklvsvlvv 47 
                    ll++ ++G +kr++ +e+++q+Rg+ G+k +k++e+ +k+vs+  v
     CCG93095.1 760 LLVVGEKGIGKRTSFEEYRRQKRGGYGIKTMKTTEKtGKVVSARTV 805
                    89****************************************9865 PP

  == domain 6  score: 48.7 bits;  conditional E-value: 8.3e-17
                    SEEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEEE CS
  DNA_gyraseA_C   1 dellliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvlvv 47 
                    del+l T +G+v+r+++ +l+ +gR+++Gv++++l+ +dk++s++ v
     CCG93095.1 809 DELMLLTLKGNVIRIKVKDLRKTGRNTQGVRLVQLDSDDKVTSIARV 855
                    89*****************************************9876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.087   3.9e+02      91     123 ..     264     296 ..     246     301 .. 0.78
   2 ?   -3.8   0.0       3.3   1.5e+04      86     103 ..     682     698 ..     679     708 .. 0.73
   3 ?    8.9   0.1   0.00039       1.8       5      32 ..     757     784 ..     754     843 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.087
      AAA_22  91 v.ielliiDEaqh.lrseealeeLrsllnlsrkgv 123
                   ++++iiDE+ + +++++++e++ +l+n  +k +
  CCG93095.1 264 GgKSAIIIDEIPYnVNRAALVEKIGELVN--QKII 296
                 34479*******98867999999999999..7766 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.3
      AAA_22  86 lraravielliiDEaqhl 103
                 +r+ +   ++ iDE ++l
  CCG93095.1 682 IRKGGI-TAISIDENDKL 698
                 555555.8999***9998 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00039
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldee 32 
                 +  l+v+Ge+G+GK t+ +++++q+   
  CCG93095.1 757 RATLLVVGEKGIGKRTSFEEYRRQKRGG 784
                 56789******************98544 PP

>> Ldi  Linalool dehydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.3   1.3e+03       7      35 ..      33      61 ..      31      65 .. 0.88
   2 ?    9.0   0.0    0.0002      0.88     240     302 ..     517     591 ..     451     609 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.3
         Ldi  7 maYalalahyhrlPalrgyfkealrrlie 35
                + Ya+++     lP +r  +k+ +rr++ 
  CCG93095.1 33 LDYAMSVIISRALPDVRDGLKPSQRRILF 61
                67***********************9975 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0002
         Ldi 240 kefltakedgkvrlkepava.............dpldagnyksarapafgyvalaasElGdeeeldallayadrel 302
                 k+ +  +e+g+v+++  ++              ++++ +ny+s+r+   g+v +a +E+G+eee+d + + +++++
  CCG93095.1 517 KTKIL-QEAGEVSFEDLVANqrvvitlthngfiKRTNLDNYRSQRRGGRGVVGMATQEVGKEEEQDFVENLINAST 591
                 33333.445555555544337777777777788999****************************998888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 5790.25
//
Query:       CCG93096.1  [L=840]
Description: DNA gyrase subunit B [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-54  181.6   0.0    1.4e-53  181.0   0.0    1.3  1  DNA_gyraseB    DNA gyrase B
    2.2e-28   98.2   0.5    4.1e-28   97.3   0.5    1.5  1  DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
    1.3e-20   73.9   0.0    2.5e-20   73.0   0.0    1.5  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    4.2e-19   68.7   0.0    1.3e-18   67.1   0.0    1.9  1  Toprim         Toprim domain
      0.003   17.4   0.0     0.0067   16.3   0.0    1.5  1  HATPase_c_3    Histidine kinase-, DNA gyrase B-, and HSP90-li
  ------ inclusion threshold ------
       0.17   12.2   0.0       0.48   10.7   0.0    1.7  2  TOPRIM_C       C-terminal associated domain of TOPRIM


Domain annotation for each model (and alignments):
>> DNA_gyraseB  DNA gyrase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.0   0.0   4.5e-57   1.4e-53       1     173 [.     237     406 ..     237     407 .. 0.99

  Alignments for each domain:
  == domain 1  score: 181.0 bits;  conditional E-value: 4.5e-57
  DNA_gyraseB   1 GlkdfveelnkdkkelikevlsvegekaveevievevalqwtssysenilsFvNniatpeGGtHvdgfksaltktlneyakkkkllkkkeekisgedi 98 
                  G+ +fv++ ++d k+l  +++ ++++k  e+ + ++  lq+t++y+e+i++++N i++p+GG+H++g+k+alt+ +n+y + ++l+k+k+ ++sged+
   CCG93096.1 237 GIVEFVSQFAQDLKPLCPKPIVIQKQK--ED-LILDCVLQYTEGYTEQIFCYTNGIPNPDGGSHLSGLKTALTRSINQYGRANNLFKEKDPQLSGEDV 331
                  99***********************99..89.****************************************************************** PP

  DNA_gyraseB  99 regltavvsvkipepqFeGQTKekLgnsevksivekvvseeleafleenkeeakkilekaveaakareaarkare 173
                  regl++++s+k+p+p+Fe+QTK kL ++ev++iv ++v+e + ++le+n++ a+ki+eka+ aa+areaa+kare
   CCG93096.1 332 REGLVCILSLKHPNPSFESQTKVKLVSPEVEGIVASLVYEGMMNYLESNPQSARKIVEKALTAARAREAAKKARE 406
                  **************************************************************************9 PP

>> DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.5   1.4e-31   4.1e-28       2      63 .]     768     829 ..     767     829 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 1.4e-31
  DNA_gyraseB_C   2 kkveiqRfKGLGEmnpeqLweTTmdpetRrLlqvtiedaeeadelfstLmGkkvepRrefie 63 
                    ++vei+RfKGLGEmnp+qL eTTmdp++R+Ll+v+i da ea+++f tLmG++vepR++fie
     CCG93096.1 768 EGVEIKRFKGLGEMNPKQLYETTMDPQKRKLLKVEIADAIEAEKIFITLMGEEVEPRKRFIE 829
                    689**********************************************************8 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   8.4e-24   2.5e-20       1     111 [.      43     186 ..      43     187 .. 0.87

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 8.4e-24
                 EHHHHHHHHHHHHHHHHHHH..HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT..............GTCSTTCHHCSTCHTSTSSSHHHHHHHH CS
   HATPase_c   1 gdekrLrqiisnlvdNavkf..atkageieveikaseddlvisveDnGiGipkedlk..............klfekfsqddstkrggggtGlGlsivkk 83 
                 +de++L++++ +++dN++++  a+++++iev+i+   +d +is+ DnG+Gip+e ++              + ++kf q + +k +gg +G+G++ v++
  CCG93096.1  43 TDERGLHHCVFEVLDNSIDEhlAGYCSRIEVTIH---VDGSISILDNGRGIPVEPHPkfkipavelvltnlHAGGKFKQ-GVYKYSGGLHGVGAKCVNA 137
                 69******************8888**********...699*****************************766667****.******************* PP

                 HHHHTTTEEEE.............EEET........TTEEEEEEEEESS CS
   HATPase_c  84 lvelmgGeiwv.............esep........grGttftftlple 111
                 l+e ++ e+ +             +s+p        +rGt +tf+++ e
  CCG93096.1 138 LSEWFKVEVFRdgkvyrmefrrgkTSRPlevvgktqKRGTLITFKPDPE 186
                 ***87755555666666888989855556666666688*******9986 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   4.5e-22   1.3e-18       1     102 [.     434     550 ..     434     551 .. 0.92

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 4.5e-22
                 EEEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHS.TTEEEEE..ECTTTHHHHHH..........HHHHHHHHSEEEEECSSSHHHHHHHHHHHHH CS
      Toprim   1 elvivEgpsdaktiakalgsgfqavtaslGhildlet.efkpvye..eiedkkkvlka..........lkelakradeiilatDpDreGeaiawellev 86 
                 el+ivEg+s+ +++++ ++++fqa+++ +G+++++e+ ++++v++  ei+++++++++          +  +++r+++iil+tD+D++G++i+++ll++
  CCG93096.1 434 ELFIVEGDSAGGSAKQGRNRQFQAILPIRGKLINVEKaRLDKVLNneEIQTIITAIGTgigegdgegaFLLERLRYHKIILMTDADVDGSHIRTLLLTF 532
                 69***********************************8888888899999999999999999*****9999999************************* PP

                 HT....HHHTTTEEEEEESS CS
      Toprim  87 lk....ellenkigrvefse 102
                 ++    el+++  g++++++
  CCG93096.1 533 FYrqmpELINH--GHIYIAQ 550
                 **888777777..9999987 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.2e-06    0.0067       5      48 ..      50      93 ..      47     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.2e-06
  HATPase_c_3  5 kAlaelvdNsld....AdaenvkievnknrgktgeivieDdGkGmsee 48
                   ++e++dNs+d    + + +++++++ +    g+i+i D+G G++ e
   CCG93096.1 50 HCVFEVLDNSIDehlaGYCSRIEVTIHVD----GSISILDNGRGIPVE 93
                 6799********87755566688888886....59**********866 PP

>> TOPRIM_C  C-terminal associated domain of TOPRIM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.5   1.1e+04       5      30 ..     641     667 ..     641     671 .. 0.61
   2 ?   10.7   0.0   0.00016      0.48      11      97 ..     745     831 ..     734     839 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.5
    TOPRIM_C   5 ivkvtkkk.keeisffslpeyeewkes 30 
                 i++v++++ ++   ff  +e  ++ e+
  CCG93096.1 641 IIRVWENNqEKLFFFFDDRELGRFAEE 667
                 799998852334556666666666665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00016
    TOPRIM_C  11 kkkeeisffslpeyeewkestenlkkwkikYYkGLgtstskeakeyfsn.ldkhlkefkleeeedkeaielaFskkkaderkewlkkl 97 
                 k ++ +++fs+ +  +  +++   ++ +ik +kGLg ++ k+  e   +  +++l + +++++ ++e i +    ++++ rk+++++ 
  CCG93096.1 745 KGEKLLDIFSIGQILDVVKEN-GREGVEIKRFKGLGEMNPKQLYETTMDpQKRKLLKVEIADAIEAEKIFITLMGEEVEPRKRFIEEN 831
                 336778899999998888877.55789*************99877666515567789999999999******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 6119.50
//
Query:       CCG93097.1  [L=234]
Description: Phosphate regulon transcriptional regulatory protein phoB [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-26   92.9   0.2    2.4e-26   92.1   0.2    1.4  1  Response_reg  Response regulator receiver domain
    8.1e-26   89.9   1.1    1.5e-25   89.1   1.1    1.4  1  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.2   2.7e-30   2.4e-26       1     111 [.      10     121 ..      10     122 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 2.7e-30
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTES CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkagad 95 
                   +l+v+D+++v el+   l+ +g+ e+ +a++g eal+ ++++ +dli+lD+++p+ +G++++k +++++    +p++ilta+s+ +d++ +l++gad
    CCG93097.1  10 ILVVEDEEDVSELICMHLKAQGF-ETVVAKEGMEALRVTRKQLPDLIVLDLMIPEFSGIDVCKYLKKDPdtAAIPIVILTAKSDPSDRILGLELGAD 105
                   8**********************.8889***************************************997777************************ PP

                   EEEESSG-HHHHHHHH CS
  Response_reg  96 dflsKpfdpeeLlkal 111
                   d+++Kpf+p+eL+ ++
    CCG93097.1 106 DYIAKPFSPRELILRI 121
                   ************9887 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   1.1   1.7e-29   1.5e-25       2      76 ..     158     229 ..     157     230 .. 0.96

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 1.7e-29
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYr 76 
                  +++eltp ef+lL +L+e++g v +reeLl+evwg+++ +d+rt+d+hi+rLR+kL+    + ++++tvrg+GYr
   CCG93097.1 158 RRIELTPIEFRLLSTLMEKEGAVQTREELLKEVWGYEKTIDTRTIDTHIRRLRDKLGR---AAQFLRTVRGIGYR 229
                  579*******************************************************...558**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1451.51
//
Query:       CCG93098.1  [L=434]
Description: Phosphate regulon sensor protein phoR [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-27   96.7   0.0      2e-27   95.9   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    7.2e-15   54.8   1.1    1.8e-13   50.3   0.1    2.6  2  HisKA        His Kinase A (phospho-acceptor) domain
    2.2e-07   31.1   0.2    5.4e-07   29.8   0.2    1.7  1  PAS_9        PAS domain
    1.1e-05   25.4   0.0    2.4e-05   24.3   0.0    1.6  1  PAS          PAS fold
    1.8e-05   24.5   0.0    4.1e-05   23.4   0.0    1.5  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
    7.9e-05   22.6   0.0     0.0002   21.3   0.0    1.6  1  PAS_8        PAS domain
    0.00018   21.7   0.0    0.00038   20.7   0.0    1.5  2  PAS_4        PAS fold
    0.00049   20.2   0.1     0.0032   17.6   0.1    2.2  1  PAS_7        PAS fold
  ------ inclusion threshold ------
      0.017   15.0   0.0      0.047   13.6   0.0    1.7  1  HATPase_c_5  GHKL domain
      0.088   12.8   0.0       0.18   11.8   0.0    1.5  1  HATPase_c_2  Histidine kinase-like ATPase domain
       0.15   12.2   0.1         19    5.4   0.0    2.5  2  E2F_TDP      E2F/DP family winged-helix DNA-binding domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   1.2e-30     2e-27       5     110 ..     320     425 ..     316     427 .. 0.91

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 1.2e-30
                 HHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTS.TSSSHHHHHHHHHHHHTTTEEEEEEETTTEE CS
   HATPase_c   5 rLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrgg.ggtGlGlsivkklvelmgGeiwvesepgrGt 102
                  ++q++ nl+dNavkf+++  ++ +e +++++++v++++DnGiGi+++dl+ +f++f++ ++++r++ ggtGlGlsi k++vel+gG+i+ +s+ g+Gt
  CCG93098.1 320 WFQQAVYNLIDNAVKFSSPPRKVLIEAQRNDQYFVLKITDNGIGISPKDLPFIFDRFYR-GDKSRNTeGGTGLGLSITKQIVELHGGKIRAKSNLGEGT 417
                 689*************889999****998778***************************.55555544******************************* PP

                 EEEEEEES CS
   HATPase_c 103 tftftlpl 110
                 t+ +++p 
  CCG93098.1 418 TMEIEIPI 425
                 ***99986 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.084   1.4e+02      17      55 ..      58     100 ..      57     106 .. 0.81
   2 !   50.3   0.1   1.1e-16   1.8e-13       2      66 ..     204     269 ..     203     270 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.084
                 HHHHHHHHHHHHC......T-HSSCHHHHHHHHHHHHHHHHHH CS
       HisKA  17 LsailgnaeaLkre....gklteelkeyletiesearrldhlv 55 
                 Lsai+ n+ea+++e    ++++ e + +l+ti ++     +++
  CCG93098.1  58 LSAISRNLEAISNEfhslIRTSKEEEINLNTILKSMTEGIAII 100
                 8999999999999888887878888889999998877666666 PP

  == domain 2  score: 50.3 bits;  conditional E-value: 1.1e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC...T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre.gklteelkeyletiesearrldhlvedlLdlsriea 66 
                 + +f+ +v+HELrtPLs  +g++e+L +  +    e k+  e+++++  rl++l+edlL l+++e+
  CCG93098.1 204 RKEFVINVSHELRTPLSIFKGYVETLIENpKLSKAETKRIYEILKKHCVRLSALIEDLLLLAKLES 269
                 789***********************6665555599999*************************97 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.2   3.3e-10   5.4e-07       2     104 .]      95     196 ..      94     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 3.3e-10
       PAS_9   2 dgilidnpdgril.yaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrkkerevevvlirkngetfwvl.ltaspvkdddgelvg..ii 96 
                 +gi+i++ ++  +  aN++++++lG +++   gk++ +l+ + pe ++ +++a+e+ +  + ++ev  +++  +   +  + a+pv +++  + +  ++
  CCG93098.1  95 EGIAIIDRNH-FIkLANDSFKNILGLTANP-QGKKLLELI-QLPEVERIIEEAFESQK--PLSQEVLGTDNRSNLTGYFvVDAVPVVNENTDIASniMV 188
                 7999987888.888***********99886.9********.*****************..999999999999977776669999997777677776799 PP

       PAS_9  97 vilrDite 104
                 +++rDite
  CCG93098.1 189 LVFRDITE 196
                 *******8 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.5e-08   2.4e-05       4     104 ..      87     183 ..      85     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.5e-08
                 HHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC.TTSSEEEEEEEEEEEEETTE CS
         PAS   4 raileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl.rdgrpihlevraspvrdagg 101
                  +il s++++i ++D+++ i ++N+++  +lGl++    gk+ll+li  +     +e++ + + +++++ ++e+  +  r + + +++v a+pv+++  
  CCG93098.1  87 NTILKSMTEGIAIIDRNHFIKLANDSFKNILGLTA-NPQGKKLLELIQLP----EVERIIEEAFESQKPLSQEVLGTDnRSNLTGYFVVDAVPVVNENT 180
                 6899*****************************97.589********999....777777777777777888885555789999999999999999987 PP

                 EEE CS
         PAS 102 eil 104
                  i 
  CCG93098.1 181 DIA 183
                 765 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.5e-08   4.1e-05       4      77 ..     322     393 ..     320     402 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.5e-08
  HATPase_c_3   4 ekAlaelvdNsld..AdaenvkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakrkstslGkkGiGl 77 
                  ++A+  l+dN++   +  ++v ie+++n+ +   ++i+D+G G+s+++l   + r+ + +k+    +++ G  G+Gl
   CCG93098.1 322 QQAVYNLIDNAVKfsSPPRKVLIEAQRND-QYFVLKITDNGIGISPKDLPFIFdRFYRGDKS----RNTEGGTGLGL 393
                  68*********996577788999999986.68******************988679999998....78888888884 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.2e-07    0.0002       4      54 ..      87     134 ..      85     151 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.2e-07
       PAS_8   4 ralfesspdgiavvdlgdrivdvNqaalellGys.adlkgellg.qllpvlrp 54 
                  +++ s+ +gia++d++  i  +N+++  +lG++ ++   +ll  +     + 
  CCG93098.1  87 NTILKSMTEGIAIIDRNHFIKLANDSFKNILGLTaNPQGKKLLElI-----QL 134
                 6899***********5557999**********66544333333232.....22 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.3e-07   0.00038       2     109 ..      91     198 ..      90     199 .. 0.87
   2 ?   -3.3   0.0       6.7   1.1e+04      34      51 ..     283     300 ..     282     308 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.3e-07
       PAS_4   2 dslpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll..pgeerhyelrllPlrdesGevig. 97 
                  s+ +++a++d++  +  aN ++  ++g++ +   Gk+l el      +++er+++++ e+++p++++   ++  +  + ++ + ++P+ +e+ ++   
  CCG93098.1  91 KSMTEGIAIIDRNHFIKLANDSFKNILGLT-ANPQGKKLLELIQL---PEVERIIEEAFESQKPLSQEVLGTDnrSNLTGYFVVDAVPVVNENTDIASn 185
                 678899*******************66665.5679*****98766...9********************99998888899999999*********5432 PP

       PAS_4  98 .vlvisrDiTerr 109
                   ++++rDiTerr
  CCG93098.1 186 iMVLVFRDITERR 198
                 257789******9 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.7
       PAS_4  34 ellGktlaellpeedaar 51 
                 +ll +tl+el+p  ++ +
  CCG93098.1 283 DLLEETLQELHPLFQQKE 300
                 577788999998755544 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1     2e-06    0.0032       1     114 [.      90     201 ..      90     202 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2e-06
       PAS_7   1 lenmsqGisvfDadlrLvawNrrylelldlpeelvqvgvpleellrynaergefg.agdveaeverrlaaaragkp.hsfererpdgrvievrgnplpd 97 
                 l++m++Gi+++D+++ + + N+ + ++l+l+++    g++l el++    +  ++ a ++++ + + +  + ++++ + +     d   +  +++ ++ 
  CCG93098.1  90 LKSMTEGIAIIDRNHFIKLANDSFKNILGLTANPQ--GKKLLELIQLPEVERIIEeAFESQKPLSQEV--LGTDNRsNLTGYFVVDAVPVVNENTDIAS 184
                 789***************************99876..**********988888873333444444444..33333303333333455555556678999 PP

       PAS_7  98 gGfVttytDiTerrrae 114
                   +V ++ DiTerr+ e
  CCG93098.1 185 NIMVLVFRDITERRKFE 201
                 99***********9877 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.9e-05     0.047      10      90 ..     325     412 ..     319     423 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.9e-05
  HATPase_c_5  10 lgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg...ek......kkle..sskskkeehGiGlksireivkkykgnlsieae 90 
                  + nl+dNA+  +s      r++ ++++++++ ++++i+ +  g   +       + ++  +s ++++  G+Gl+  ++iv+ ++g+++ + +
   CCG93098.1 325 VYNLIDNAVKFSSP----PRKVLIEAQRNDQYFVLKITDNGIGispKDlpfifdRFYRgdKSRNTEGGTGLGLSITKQIVELHGGKIRAKSN 412
                  67999**9987765....5789999999999999988655444344114455532222436677788999***************9988765 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.18      39     109 ..     324     400 ..     320     419 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
  HATPase_c_2  39 actNavehayleap.egpvevrlesdeealtvevaDsGpgfdpetlpdpteeep.....keslkegGrGlalikglv 109
                  a++N +  a +  +   +v ++++++++ ++++++D+G g  p++lp      +      + +   G+Gl ++k++v
   CCG93098.1 324 AVYNLIDNAVKFSSpPRKVLIEAQRNDQYFVLKITDNGIGISPKDLPFIFDRFYrgdksRNTEGGTGLGLSITKQIV 400
                  556666666666665799**********************9999988654433366655666666677777777766 PP

>> E2F_TDP  E2F/DP family winged-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.012        19       3      34 ..      63      94 ..      61     133 .. 0.88
   2 ?    4.4   0.0     0.024        39      34      50 ..     216     247 ..     180     248 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.012
     E2F_TDP  3 ksLgvltkkfvellkesakgtlslneaakeLv 34
                + L++++++f +l++ s++++++ln++ k + 
  CCG93098.1 63 RNLEAISNEFHSLIRTSKEEEINLNTILKSMT 94
                67999**********9***********99887 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.024
     E2F_TDP  34 v...............dkkdekvkkRRiYDil 50 
                                 + k  k + +RiY+il
  CCG93098.1 216 RtplsifkgyvetlieNPKLSKAETKRIYEIL 247
                 2555555555555556788899********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3189.12
//
Query:       CCG93099.1  [L=271]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-16   58.4   0.0    8.3e-16   57.9   0.0    1.2  1  Ysc84     Las17-binding protein actin regulator


Domain annotation for each model (and alignments):
>> Ysc84  Las17-binding protein actin regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   4.6e-20   8.3e-16       2     125 ..     133     251 ..     132     254 .. 0.90

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 4.6e-20
       Ysc84   2 gvgaGfqiGvdiydcvlvlntkealeaftkktrvslGgdlsvaaGpvgaggeaeaaaaaklkapvysysksrGlyaGvsldgtviterkdaNaafYgek 100
                 g+ +G+ +G  ++d++lv+nt+e+++ + k+t++++G   s+  G v  + + +a+++   +a+vy+y  s+    G+++    ++ ++++N ++Y++k
  CCG93099.1 133 GWDLGLSVGFLSADLLLVINTQETIDLLIKGTKCNIGVGQSAQPGLVELTED-QATSP---TAAVYVYLISKKKLKGIAIGNIDLIADPETNWKYYQTK 227
                 6789********************************9999988886554444.44454...69**********************************98 PP

       Ysc84 101 gvsveqILrgevpwpaaakeLlevl 125
                  + + qIL+g++++p++ ++L+++l
  CCG93099.1 228 -CIPYQILSGRIAVPESGQRLIQAL 251
                 .**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1847.37
//
Query:       CCG93100.1  [L=268]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2024.43
//
Query:       CCG93101.1  [L=727]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-75  250.3   0.1    1.4e-74  249.5   0.1    1.4  1  Thioredox_DsbH  Protein of unknown function, DUF255
    2.5e-09   37.2   0.3    6.4e-09   35.9   0.0    1.9  2  Thioredoxin_7   Thioredoxin-like
     0.0062   15.8   0.7      0.047   12.9   0.1    2.5  3  GlcNAc_2-epim   N-acylglucosamine 2-epimerase (GlcNAc 2-epime
     0.0079   15.8   0.8        3.6    7.0   0.0    2.9  3  Glyco_hydro_76  Glycosyl hydrolase family 76
  ------ inclusion threshold ------
      0.016   14.7   4.6      0.036   13.6   0.4    2.6  2  C5-epim_C       D-glucuronyl C5-epimerase C-terminus
        0.1   11.7   0.2         11    4.9   0.1    2.5  2  Glyco_hydro_88  Glycosyl Hydrolase Family 88


Domain annotation for each model (and alignments):
>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.5   0.1   4.8e-78   1.4e-74       2     162 ..       2     162 ..       1     163 [. 0.99

  Alignments for each domain:
  == domain 1  score: 249.5 bits;  conditional E-value: 4.8e-78
  Thioredox_DsbH   2 nrlaeekspYllqhaknpvdWypwgeealekakeedkpillsiGysachWChvmekesfedeevaallnesfvsvkvDreerPdldkiymeavqa 96 
                     n+l++ekspYllqha+npv+W+pw+e++++kake ++pi+ls+Gys+chWChvm++esfe+++va+lln+ +++vkvDreerPd+d++yme+vqa
      CCG93101.1   2 NTLSKEKSPYLLQHAHNPVQWQPWTEATIQKAKELNRPIFLSVGYSTCHWCHVMAEESFENPTVAELLNAFYIPVKVDREERPDIDQFYMEFVQA 96 
                     99********************************************************************************************* PP

  Thioredox_DsbH  97 ltgsggWPlnvfltpdlkpffggtYfpkeeregrpgflevlekiaelweeereeleeeaeelleal 162
                     + g+ggWP++v+ltpdl+pffggtYfp e++ grpgf+++l+kia+lw+++r++l+++ +e+l+++
      CCG93101.1  97 FCGQGGWPMSVWLTPDLEPFFGGTYFPLESKWGRPGFIDLLKKIANLWQSHRSALQQQGQEILNKM 162
                     **************************************************************9987 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   2.1e-12   6.4e-09       1      67 [.      21      86 ..      21     111 .. 0.85
   2 ?   -2.6   0.1       2.3   6.7e+03      36      53 ..     519     536 ..     517     537 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 2.1e-12
                   ---SSHHHHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG CS
  Thioredoxin_7  1 ewlsdldealakaaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdani 67
                   +w+ + ++  +ka+e ++p+++ +g s+c+ C++++++  ++++v+++l+  ++ ++vd +er + i
     CCG93101.1 21 QWQPWTEATIQKAKELNRPIFLSVGYSTCHWCHVMAEESFENPTVAELLNAFYIPVKVDREERPD-I 86
                   59************************************99999****9************99987.3 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.3
                    HHHHHH-HHHHH.HHHT- CS
  Thioredoxin_7  36 erdflsdeevkaalaekf 53 
                    e+++l+++ ++++l ekf
     CCG93101.1 519 EKWLLQAKMFQELLEEKF 536
                    68999*******999998 PP

>> GlcNAc_2-epim  N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.15   4.6e+02     259     317 ..     259     317 ..     227     337 .. 0.69
   2 !   12.9   0.1   1.6e-05     0.047      86     178 ..     445     539 ..     435     565 .. 0.84
   3 ?   -2.3   0.0      0.66     2e+03     151     170 ..     580     599 ..     573     604 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.15
                    S-B-TTS-BSS--EEHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHTB-TTTS CS
  GlcNAc_2-epim 259 ytldaagkpvddakllWpqtEalkaaaalaeltgearylewyarvaeylerhlidpekG 317
                    y +da+ ++++ +k+l  q+    a + + + t +    e + ++ eyl +hl +p+ G
     CCG93101.1 259 YSVDAQWRLPHFEKMLYDQAHLGSAYLEAFQMTSDFLFKETATALFEYLFSHLYNPAGG 317
                    55666666666667767776644444556666777777777777777777777777666 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.6e-05
                    HHHHHHHHHTTT-TTH.HHHHHHHHHHHHHHTEETTTTEE--EE-TTSS-BEEHHHHHHHHHH.HHHHHHTT-BTHHHHHHHHHHHHHTTTTGGG CS
  GlcNAc_2-epim  86 vllalasalaageeea.kdlldetlavlekhlweekaglvkeesdkefsklrgsnpnMhlleA.mLalaeatgdkeyleraeeiaelvisefada 178
                    ++ ala+a++++ + +  +++++t +++ +hlw+ + +++     + +  ++g  ++   l+A +L l+ea++d+++l +a+ + el  ++fad 
     CCG93101.1 445 AISALAKAYMVLADSRyLNEAKKTADFILEHLWDADSKILYRIYRNGRGSIPGFASDYASLAAsLLDLFEADQDEKWLLQAKMFQELLEEKFADP 539
                    6668899888877654499****************999988877777777789999977666626779**************9999998888874 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.66
                    HHHTT-BTHHHHHHHHHHHH CS
  GlcNAc_2-epim 151 laeatgdkeyleraeeiael 170
                    l+ +tg++++++r ee+++ 
     CCG93101.1 580 LFSITGEEKWKKRLEELFNS 599
                    56789999999999998765 PP

>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.2     0.005        15     218     270 ..     439     492 ..     432     529 .. 0.69
   2 ?   -0.4   0.0      0.21   6.2e+02      98     127 ..     530     558 ..     499     564 .. 0.68
   3 !    7.0   0.0    0.0012       3.6     229     251 ..     578     600 ..     568     619 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.005
                     HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCEEC.TTEEEEEE-TTS CS
  Glyco_hydro_76 218 tYnqGtylsgaaylynaTgdekWldrvkgllnatlstffpd.gnilyevaceps 270
                     t  +G  +s+ a  y +  d+++l+++k+ ++ +l++++++ ++ily ++ +++
      CCG93101.1 439 TAWNGYAISALAKAYMVLADSRYLNEAKKTADFILEHLWDAdSKILYRIYRNGR 492
                     556788888888888888899999999999999999999988888887666553 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.21
                     HHHHH.....H--HHHHHHHHHHHHHHHHC CS
  Glyco_hydro_76  98 taaernfpeptdepswLalAqavfntqasr 127
                     +  e +f +p  ++++L++A ++  t++++
      CCG93101.1 530 ELLEEKFADP-YRHQYLSRAVETAATIIQT 558
                     4567788888.8888888888888888775 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0012
                     HHHHHHH--HHHHHHHHHHHHHH CS
  Glyco_hydro_76 229 aylynaTgdekWldrvkgllnat 251
                       l+ +Tg+ekW++r+++l n++
      CCG93101.1 578 WKLFSITGEEKWKKRLEELFNSA 600
                     46899***************997 PP

>> C5-epim_C  D-glucuronyl C5-epimerase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3     0.047   1.4e+02      30      61 ..     276     307 ..     272     326 .. 0.82
   2 ?   13.6   0.4   1.2e-05     0.036      31      61 ..     442     472 ..     439     478 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.047
   C5-epim_C  30 aqgqaisvllrAYeltgdekYlkaakkalksf 61 
                 +q+++ s++l+A+++t d  + ++a ++ +++
  CCG93101.1 276 DQAHLGSAYLEAFQMTSDFLFKETATALFEYL 307
                 699999************99999998887764 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.2e-05
   C5-epim_C  31 qgqaisvllrAYeltgdekYlkaakkalksf 61 
                 +g+ais+l++AY +  d++Yl+ akk  +++
  CCG93101.1 442 NGYAISALAKAYMVLADSRYLNEAKKTADFI 472
                 599***********************98765 PP

>> Glyco_hydro_88  Glycosyl Hydrolase Family 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0    0.0084        25      69     118 ..     272     320 ..     248     333 .. 0.82
   2 ?    4.9   0.1    0.0038        11      31      93 ..     442     521 ..     422     543 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0084
                     TTSGGGTGHHHHHHHHHHHH-THHHHHHHHHHHHHHHHCS-B.TTS.B.S CS
  Glyco_hydro_88  69 elelDdidigllllllyeltkderykeaaeeladyvlakpprtseGgfwh 118
                     ++  D++ +g  +l  +++t d  +ke+a +l++y++++ ++   Ggf  
      CCG93101.1 272 KMLYDQAHLGSAYLEAFQMTSDFLFKETATALFEYLFSHLYN-PAGGFYS 320
                     566799999999999999999999999999999999999999.4577765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0038
                     HHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCTTS-.................CTTSGGGTGHHHHHHHHHHHH-THHH CS
  Glyco_hydro_88  31 nGvflsglleayeatgdkeyldyakawadslideggk.................telelDdidigllllllyeltkdery 93 
                     nG ++s+l++ay    d++yl+ ak++ad  ++                       ++ D+++++  ll+l+e  +de+ 
      CCG93101.1 442 NGYAISALAKAYMVLADSRYLNEAKKTADFILEHLWDadskilyriyrngrgsiPGFASDYASLAASLLDLFEADQDEKW 521
                     78899999999999999999999999887654433222225666666666666555666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4976.21
//
Query:       CCG93102.1  [L=284]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2165.59
//
Query:       CCG93103.1  [L=544]
Description: chaperonin Hsp60, large ATPase subunit of GroESL [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.9e-101  338.5  16.6   9.6e-101  337.8  16.6    1.3  1  Cpn60_TCP1     TCP-1/cpn60 chaperonin family
    3.2e-05   23.4   0.8    3.2e-05   23.4   0.8    2.0  2  Lipoprotein_7  Adhesin lipoprotein
  ------ inclusion threshold ------
       0.13   12.6   0.3       0.42   11.0   0.3    1.9  1  UvrA_DNA-bind  UvrA DNA-binding domain
       0.13   12.5   0.0       0.31   11.3   0.0    1.6  1  MPLKIP         M-phase-specific PLK1-interacting protein


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.8  16.6  2.1e-104  9.6e-101       1     489 [.      23     522 ..      23     524 .. 0.93

  Alignments for each domain:
  == domain 1  score: 337.8 bits;  conditional E-value: 2.1e-104
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHH....HHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPa....akllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegye 95 
                 l+++vk+tlGP G++++l +k+g++++T+DG+t++ke+e+e+P     a+l+ e+a+++ + +GDGTtt+++La+++ +e+ k + ag++p ++++g++
  CCG93103.1  23 LSKAVKCTLGPAGRNVILDKKFGSPTITKDGVTVAKEVELEDPWenmgAQLVKEVASKTSDVAGDGTTTATVLAESIYKEGLKNVTAGANPMDLKRGID 121
                 789************************************************************************************************ PP

                 HHHHHHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECECTTSEEE..SEEEESS--SS CS
  Cpn60_TCP1  96 kalekaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsledselv..eGlvldkgvls 192
                 ka+++++++Lk i+  ++     +ee+++va++s++ +        +++++ dA+          ++g+ ++v++e+ + ++++l+  eG+++d+g++s
  CCG93103.1 122 KAVHAVVKQLKDISHIVK----GKEEIKQVATVSANWD------TSIGEIISDAL---------DKVGKDGTVTVEEAKHIETTLEvvEGMQFDRGYIS 201
                 ***********9944444....56**************......99*********.........89**************77766555*********** PP

                 T.......TSSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S-... CS
  Cpn60_TCP1 193 p.......dmpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrv... 281
                 p       +++  lena++l+ +++++  k+                        l++lleki+k+g+++++++++++ +al++l+ n++++  +v   
  CCG93103.1 202 PyfvtnaeELEAVLENAYILIHEKKISSLKD------------------------LLPLLEKIAKAGKPLLIIAEDVEGEALATLVVNKLRGTLQVcav 276
                 *9999888889999*****************........................******************************************** PP

                 ........-HHHHHHHHHHHT--EBSCG.....GGGGCGC-EEEEEEEECCETTCCEEEEE...................................CES CS
  Cpn60_TCP1 282 ........kkkdlerlakatGatavssl.....edltpeelGtakkveeekigsekttiie...................................evk 332
                         +k++le++a++tG++ +++      e+++ e+lG ak++    +++e+ttiie                                     +
  CCG93103.1 277 kapgfgdrRKAMLEDIAILTGGRCLTEDlgiklENVQLEDLGRAKRI---VVEKENTTIIEgagsrseiqgrinqikrqieettsdydreklqerlAKL 372
                 **************************99898889999999*******...999********88888888887777777777666666655555544239 PP

                 SSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHH CS
  Cpn60_TCP1 333 sgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaksvsgeeqlaieafakALevipktLaeNaGldpievlakl 431
                  g++a+i +++at+t+l+e++ ++edAl+++++a+e e++vpGGG+++l++ k+++e   s++g+e+++++++ kALe++++tLa NaGl++  +++++
  CCG93103.1 373 AGGVAVIQVGAATETELKEKKARVEDALHATRAAVE-EGIVPGGGVALLRCQKAIEE--LSLKGDEKIGADIVYKALEYPLRTLAYNAGLEGSVIVNEV 468
                 ************************************.******************44..4578************************************ PP

                 HHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXX CS
  Cpn60_TCP1 432 raahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLrideiika 489
                 +a   kg+   g+dv++ +++d++eag+vDp+kv+r al++A+++a ++L++++++ +
  CCG93103.1 469 KA--RKGN--EGFDVATHKFVDMFEAGIVDPTKVTRTALENAASIAGLLLTTEAMVTE 522
                 **..5555..7*******************************************9976 PP

>> Lipoprotein_7  Adhesin lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.8   7.1e-09   3.2e-05     146     297 ..      47     198 ..      39     214 .. 0.83
   2 ?   -0.8   0.6      0.16     7e+02      77     143 ..     331     395 ..     309     411 .. 0.50

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 7.1e-09
  Lipoprotein_7 146 ktvektiaevekkfkiekdfkeklesfiddlldksreidefvtvvskkeefvlaelesfkelttl.qfneiksewakvldawknelteinsiikgv 240
                     t+ k    v k  ++e+ + +   ++++++  k+ ++    t++++     + + e +k++t+     ++k    k  +a  ++l++i +i+kg 
     CCG93103.1  47 PTITKDGVTVAKEVELEDPWENMGAQLVKEVASKTSDVAGDGTTTATVLAESI-YKEGLKNVTAGaNPMDLKRGIDKAVHAVVKQLKDISHIVKGK 141
                    57777778899999999999999999999999999999877776666544333.458999998751456899************************ PP

  Lipoprotein_7 241 eelkklsheiselsnsvkktiselekkfkiddktnkeeakkfknelenladqllnks 297
                    ee+k++++   +++ s+ + is+   k   d ++  eeak++   le +    ++++
     CCG93103.1 142 EEIKQVATVSANWDTSIGEIISDALDKVGKDGTVTVEEAKHIETTLEVVEGMQFDRG 198
                    ***********************9999999***************998766555555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.16
  Lipoprotein_7  77 ksfkeagsygdypaiisklsaavenaksekkavddknakiakelaernakiqsnieelkklskeafe 143
                      +  ags ++    i ++   +e++ s+  + ++ ++++a +la   a iq + +  + l++++  
     CCG93103.1 331 TIIEGAGSRSEIQGRINQIKRQIEETTSDYDR-EKLQERLA-KLAGGVAVIQVGAATETELKEKKAR 395
                    34444455555555555555555544443222.12222222.2444444444444444444444444 PP

>> UvrA_DNA-bind  UvrA DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   9.3e-05      0.42      81     109 ..     338     366 ..     316     367 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.3e-05
                    ....---HHHHHHHHHH-------HHHHH CS
  UvrA_DNA-bind  81 yektfeGvipnlerryreteSeavreele 109
                     + +++G i++++r+ +et+S++ re+l+
     CCG93103.1 338 SRSEIQGRINQIKRQIEETTSDYDREKLQ 366
                    567899********************997 PP

>> MPLKIP  M-phase-specific PLK1-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.9e-05      0.31      27      48 ..      62      83 ..      62      91 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.9e-05
      MPLKIP 27 LEDPWagLepksvtdkdqsssn 48
                LEDPW++   ++v+++ ++ s 
  CCG93103.1 62 LEDPWENMGAQLVKEVASKTSD 83
                9**************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 3492.11
//
Query:       CCG93104.1  [L=99]
Description: chaperone Hsp10, affects cell division [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-35  120.3   1.1      3e-35  120.1   1.1    1.0  1  Cpn10     Chaperonin 10 Kd subunit


Domain annotation for each model (and alignments):
>> Cpn10  Chaperonin 10 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   1.1   1.7e-39     3e-35       1      93 []       5      97 ..       5      97 .. 0.99

  Alignments for each domain:
  == domain 1  score: 120.1 bits;  conditional E-value: 1.7e-39
                S-EE-TTEEEEEESGG-TTS-TT----HHHHHSEEEEEEEEE-T........TS-TTS--T-EEEEEGGGTSS-GG---.EEEEEGGG--EE- CS
       Cpn10  1 kikplgdrVlvkraeeeekteggiilpdsakekpeqGvVvaVGegarnekgedvplevkvgdkVlfpkyagtkvkvdgkeylilkekdIlavi 93
                ki+plg+rVlvk +ee+e+ +ggii+pd+akekp++++V+aVG+g+ +e+g+++p+e+k+gdkVl +ky+gt+vk+dg+++ il+e+d+la+i
  CCG93104.1  5 KIRPLGERVLVKLNEEKEVRKGGIIIPDTAKEKPQEATVIAVGPGKLDENGKRIPIELKKGDKVLISKYGGTEVKIDGESFQILREDDVLAII 97
                79*****************************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 710.92
//
Query:       CCG93105.1  [L=637]
Description: chaperone Hsp70 in DNA biosynthesis/cell division [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.5e-261  867.6   9.6   4.1e-261  867.4   9.6    1.0  1  HSP70          Hsp70 protein
    9.2e-14   51.0   8.2    2.2e-12   46.4   1.2    2.6  3  MreB_Mbl       MreB/Mbl protein
    0.00041   20.7   6.3       0.36   11.3   0.1    4.1  3  FtsA           Cell division protein FtsA
     0.0089   15.8   0.1      0.022   14.5   0.1    1.6  1  FGGY_C         FGGY family of carbohydrate kinases, C-termina
  ------ inclusion threshold ------
       0.39   10.2   7.5       0.64    9.5   7.3    1.5  1  UvrD-helicase  UvrD/REP helicase N-terminal domain
       0.44   11.0   9.0       0.34   11.4   0.9    3.2  3  GlutR_dimer    Glutamyl-tRNAGlu reductase, dimerisation domai


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  867.4   9.6  1.4e-264  4.1e-261       1     598 [.       4     600 ..       4     601 .. 0.99

  Alignments for each domain:
  == domain 1  score: 867.4 bits;  conditional E-value: 1.4e-264
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTT.SEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkav 98 
                 v+GiDLGttns++a++egg++ v++n+eg+rttPsvvaFtk  erlvG+aAkrqa+tn+knt++s+Kr+iGr+fs+  vq+eik +pykv + +ng+  
  CCG93105.1   4 VLGIDLGTTNSCMAIVEGGQPVVLENSEGARTTPSVVAFTKSgERLVGQAAKRQAITNSKNTIYSIKRFIGRRFSE--VQEEIKRVPYKVIEGKNGDCA 100
                 79*************************************************************************9..********************* PP

                 EEEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXS CS
       HSP70  99 veveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGg 195
                 veve+ ge   +tp++isa++L+klk++ae+ lg+k+t+avitvPaYfnd+qRqatk Ag+iAG++vlRi+NepTAa+laYGldkk+ ++ ++vyDlGg
  CCG93105.1 101 VEVEVGGErrIYTPQEISAFILMKLKADAESKLGEKITQAVITVPAYFNDSQRQATKAAGEIAGFEVLRIINEPTAASLAYGLDKKK-DERIAVYDLGG 198
                 ********999***************************************************************************8.99********* PP

                 SXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTT.EEEEEEE CS
       HSP70 196 gtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedg.kdlsekl 293
                 gtfd+Sile+++GvfevkaT+gDthlGG+d+D+a++e+++++fkk++gidl+ ++ a+qr+ke+aekaK++LSs+ + einl+++t+d++g k++++kl
  CCG93105.1 199 GTFDISILEIGEGVFEVKATNGDTHLGGDDWDAAIMEWIIQDFKKETGIDLHGQPDAVQRIKEEAEKAKIALSSALEYEINLPFITADQTGpKHIQKKL 297
                 *************************************************************************************************** PP

                 EHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEBESS CS
       HSP70 294 sRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllDvtpL 392
                 +Rak+e+l+e+l ert++pv ++lkdakl++ eide+vlvGG+tR+Pk+ e+ + l+g+ep+k+vnpDe+va+GAA+q++vl+g  +vkd+lllDvtpL
  CCG93105.1 298 TRAKLEQLTEHLAERTVQPVLNCLKDAKLTAAEIDELVLVGGMTRMPKIIETARRLIGREPHKGVNPDEVVAVGAAIQGAVLKG--QVKDVLLLDVTPL 394
                 ************************************************************************************..************* PP

                 -EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTCCE CS
       HSP70 393 slgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketgke 491
                 +l+iet+gg++t +i+rnttipt+ksq+fst++dnq++vei+vlqger +++dnkllg f+ldgippaprGvpqieVtfdidanGil+vsakd +tg+e
  CCG93105.1 395 TLSIETAGGIATPMIPRNTTIPTRKSQIFSTFSDNQPSVEIRVLQGERPMARDNKLLGVFHLDGIPPAPRGVPQIEVTFDIDANGILHVSAKDLGTGRE 493
                 *************************************************************************************************** PP

                 EEEEEECCSSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHCHTTSSCHHHHHHHHHHHHHHH CS
       HSP70 492 eeitieaseglseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleeeaekvseaekekvesaieeLkeeleeeekeeieakteelkkvv 590
                 ++iti+ s+gls+eeiekm k+ae+++e+d k+ke++eakn+a++ +y++ek l e ++kv++a+k ++e+ ie+++e ++++++++i++++eel++ v
  CCG93105.1 494 QKITITGSSGLSKEEIEKMTKEAEAYREQDLKNKERAEAKNNADNAAYQAEKLLREYGDKVDSAKKLEIEKCIEKVREVIKGDDTDAIKKAMEELNEKV 592
                 *************************************************************************************************** PP

                 HHHHHHHH CS
       HSP70 591 ekiaekly 598
                 ++i  ++y
  CCG93105.1 593 QAISVEMY 600
                 **998887 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1   0.00024      0.72       3      48 ..       4      56 ..       2      72 .. 0.66
   2 !   46.4   1.2   7.4e-16   2.2e-12      87     317 ..     131     374 ..     113     382 .. 0.77
   3 ?   -3.2   0.1      0.98   2.9e+03      74     119 ..     543     588 ..     541     603 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00024
                EEEEEE-SSEEEE..EETTTEEEEEE.......ES-EEEETTT--EEEESHHHHT CS
    MreB_Mbl  3 dlgiDLGtantlv..yvkgkgivlne.......psvvAikkktkkvlavGeeAkk 48
                 lgiDLGt+n  +     g+ +vl++       psvvA++k+ +++  vG+ Ak+
  CCG93105.1  4 VLGIDLGTTNSCMaiVEGGQPVVLENsegarttPSVVAFTKSGERL--VGQAAKR 56
                58********865214556778886433444449999998887776..6888774 PP

  == domain 2  score: 46.4 bits;  conditional E-value: 7.4e-16
                 TSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEEEE.....ES-SHHHH CS
    MreB_Mbl  87 kkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevavislggivtsks.....vrvaGdel 180
                 +k   + ++ vi+vP   ++ +r+A k a + aG +   +i+ep aA +  gl+ ++ +   v d+Gggt +++++ +g+ v          +++Gd++
  CCG93105.1 131 SKLGEKITQAVITVPAYFNDSQRQATKAAGEIAGFEVLRIINEPTAASLAYGLDKKKDERIAVYDLGGGTFDISILEIGEGVFEVKatngdTHLGGDDW 229
                 4444467889********************************************************************9876443211222689***** PP

                 HHHHHHHHHHHHSEE--HH......HHHHHHHHH-BSS--HHHH.EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHH.HHHHHHTS.-HHHHH CS
    MreB_Mbl 181 deaiikyirkkynlliGer......taekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaivea.vkevLekt.ppeLaa 270
                 d ai+++i ++++   G         +++ik e  +a+   ++  + ei+   ++       +++++  r  l++  +++ e  v+ vL+    + L+a
  CCG93105.1 230 DAAIMEWIIQDFKKETGIDlhgqpdAVQRIKEEAEKAKIALSSAlEYEINLPFITADQTGPKHIQKKLTRAKLEQLTEHLAERtVQPVLNCLkDAKLTA 328
                 ********9999987775322222256778888887776666556777777777766666666777777777776666666642555665541356777 PP

                 HHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHH CS
    MreB_Mbl 271 divdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtgk 317
                   +d+ +vl+GG + +  + ++ ++ +g + + + +p ++va G+++
  CCG93105.1 329 AEIDE-LVLVGGMTRMPKIIETARRLIGREPHKGVNPDEVVAVGAAI 374
                 77776.6777***********99999999999999999999999875 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.98
                 HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHT CS
    MreB_Mbl  74 aeellkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakka 119
                 ae+ll+++ +kv ++k+l+ ++ +  v + i   +  A+k+a++++
  CCG93105.1 543 AEKLLREYGDKVDSAKKLEIEKCIEKVREVIKGDDTDAIKKAMEEL 588
                 5666666666666666666666666665555555555555555544 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0014       4.3       2      23 ..       6      27 ..       5     120 .. 0.79
   2 !   11.3   0.1   0.00012      0.36       2      88 ..     193     358 ..     192     373 .. 0.69
   3 ?    1.6   0.4      0.13   3.8e+02      37      85 ..     532     569 ..     478     614 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0014
                EEEE-SSSEEEEEEETTEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  2 lvDiGagktdvavaedgalvhl 23
                ++D+G++ +++a++e+g++v l
  CCG93105.1  6 GIDLGTTNSCMAIVEGGQPVVL 27
                79***************98873 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00012
                 EEEE-SSSEEEEEEETTEEEEEEEES-......-HHHHHHH...................HHHHHT--HHHHHHHHHHH--S--............... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxx............... RF
        FtsA   2 lvDiGagktdvavaedgalvhlrvigv......ggngitkd...................iakalrtaveeAerikikyGsala............... 60 
                 + D+G+g+ d++++e g+ v+ +v  +      gg+  +                        a++   eeAe+ ki   sal+               
  CCG93105.1 193 VYDLGGGTFDISILEIGEGVF-EVKATngdthlGGDDWDAAimewiiqdfkketgidlhgQPDAVQRIKEEAEKAKIALSSALEyeinlpfitadqtgp 290
                 558888888888888875333.22222212223444444445555555555556666666455568888999999998888888999999999999996 PP

                 ...EEEEEHHHHH...................................GGGGSTTHHHHHHHHH..T- CS
                 ...xxxxxxxxxx...................................xxxxxxxxxxxxxxxx..xx RF
        FtsA  61 ...ekeigrkels...................................ggsalpnleelaeral..sp 88 
                    +k+++r++l+                                   g + +p+++e a+r +  +p
  CCG93105.1 291 khiQKKLTRAKLEqltehlaertvqpvlnclkdakltaaeidelvlvgGMTRMPKIIETARRLIgrEP 358
                 666444444444488999999999999999999999999999*****************999965533 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.13
                 HHHHHT--HHHHHHHHHHH--S--EEEEEHHHHHGGGGSTTHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  37 iakalrtaveeAerikikyGsalaekeigrkelsggsalpnleelaera 85 
                 +++   +a  +Ae++ ++yG  +            +++   +e+++e++
  CCG93105.1 532 AKNNADNAAYQAEKLLREYGDKVD-----------SAKKLEIEKCIEKV 569
                 333344444555555555555444...........33333344444433 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   7.4e-06     0.022     145     196 ..     317     378 ..     292     379 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.4e-06
      FGGY_C 145 d.........sgkpldrlavdGGgskndllmqllAdilg.vpVerpktaeatalGaAilAav 196
                           + +++d+l+++GG+++ + + +++  ++g  p + + ++e +a+GaAi +av
  CCG93105.1 317 VlnclkdaklTAAEIDELVLVGGMTRMPKIIETARRLIGrEPHKGVNPDEVVAVGAAIQGAV 378
                 03333334557999*************************989899999***********997 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.3   0.00022      0.64     171     261 ..     501     596 ..     255     601 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00022
                    HCCCHHHHHCHHHHHHHHHHHTTCCTTHHCHSSTSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHH.....CHHHHHHHHHHSSEEE CS
  UvrD-helicase 171 elslskskaeelrelvskakekqlspkelkkafekasdlqkkiaeflkeyqeqkkeenalDfsdllhallellee.....neelaealrerykeil 261
                       lsk  +e++ +  + + e++l++ke+ +a ++a++  ++++++l+ey ++ +  + l+ ++ + ++ e+ +       ++++e+l+e+++ i 
     CCG93105.1 501 SSGLSKEEIEKMTKEAEAYREQDLKNKERAEAKNNADNAAYQAEKLLREYGDKVDSAKKLEIEKCIEKVREVIKGddtdaIKKAMEELNEKVQAIS 596
                    4456889999*************************************************************9998877776778888888888775 PP

>> GlutR_dimer  Glutamyl-tRNAGlu reductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.051   1.5e+02      51      81 ..     295     327 ..     287     338 .. 0.72
   2 ?    0.3   0.4      0.32   9.6e+02      26      48 ..     509     531 ..     503     550 .. 0.60
   3 ?   11.4   0.9   0.00012      0.34      20      69 ..     541     592 ..     532     609 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.051
                  --------TTHHHHHHHHHHHHHHHHHHSS..- CS
  GlutR_dimer  51 dgedreelekltrslvnkllheptarLkea..e 81 
                  ++ +r++le+lt++l  + +++  + Lk+a  +
   CCG93105.1 295 KKLTRAKLEQLTEHLAERTVQPVLNCLKDAklT 327
                  444566699999999999999999999998431 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.32
                  HHHHHHHHHHHHHHHHHHHHS-S CS
  GlutR_dimer  26 Ikalrekaeeireeeleralkkl 48 
                  I ++ ++ae++re+ l+   +  
   CCG93105.1 509 IEKMTKEAEAYREQDLKNKERAE 531
                  88899999999999886444333 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00012
                  HHHHHHHHHHHHHHHHHHHHHHHHHHS-S....--------TTHHHHHHHHH CS
  GlutR_dimer  20 levvptIkalrekaeeireeeleralkkla..ldgedreelekltrslvnkl 69 
                   +++++++++ +k+++ ++ e+e++++k++  ++g+d ++++k ++ l  k+
   CCG93105.1 541 YQAEKLLREYGDKVDSAKKLEIEKCIEKVRevIKGDDTDAIKKAMEELNEKV 592
                  678999**************************************99998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1723  (0.0961013); expected 358.6 (0.02)
Passed bias filter:                      836  (0.0466284); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.50
# Mc/sec: 3821.51
//
Query:       CCG93106.1  [L=476]
Description: UDP-N-acetylmuramate-alanine ligase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-29  102.1   0.0    5.3e-29  101.6   0.0    1.2  1  Mur_ligase_M  Mur ligase middle domain
    3.7e-16   59.2   0.0    1.2e-15   57.6   0.0    1.9  2  Mur_ligase    Mur ligase family, catalytic domain
      1e-12   48.1   0.0    4.5e-12   46.1   0.0    2.1  2  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   8.8e-33   5.3e-29       1     192 []     121     302 ..     121     302 .. 0.91

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 8.8e-33
                   EESSS-HHHHHHHHHHHHHCT.EEEEETTCSS-THHHHHHHHHHHHH.TT-SEEEEE--HCHHHC..TTTCCH.CBESEEEE---TSTTHHHHSSHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaaileka.gkvigtvgttnneiglpktlaemek.keaeyavlEvsshglge..krlegl.lkpdvavitnispdHldfhgtle 92 
                   vTGt+GKTTtt+l+ +++e+a  +  + +g      glp ++a+ ++ ++ +y++lE  +++ +   kr + l + p+ ++i+ni+ dH d +++le
    CCG93106.1 121 VTGTHGKTTTTSLLVWLFESAsLNPSFFIG------GLPNNFASGCRyTQSDYWILEGDEYDTAYfdKRSKFLhYLPQTVIINNIEYDHADIFSSLE 211
                   9*****************999788999999......577777776665899**********999897888887999********************* PP

                   HHHHHHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHHHHHH CS
  Mur_ligase_M  93 nyaeaKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlraknieeksegteiellevkggeleieipllGkhnvyNalaai 189
                   +++ ++++l+  +++ g ++i  ddp   ++++ +k + + v+t+gl k+a d++ ++i++++ g+++++l        + +p++G++nv Na++ai
    CCG93106.1 212 DILLSFKRLVHLIPKTGHLIIPEDDP---TIAEVAKGSLAPVYTVGLGKKA-DFQISEITYEEAGSNFKML-----GESFFLPMPGEYNVRNAAMAI 299
                   **************************...888888888888*********9.7**************9666.....34699**************** PP

                   HHH CS
  Mur_ligase_M 190 aaa 192
                   aaa
    CCG93106.1 300 AAA 302
                   *96 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0     2e-19   1.2e-15       2      81 ..      14     109 ..      13     115 .. 0.97
   2 ?   -3.7   0.0       2.6   1.5e+04      37      50 ..     422     435 ..     416     447 .. 0.73

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 2e-19
                 EEEESTTSCCHHHHHHHHHHTTSEEEEEESSHC......HHHTT-EEEES-HGGGG.........EE-T.S-TTCHHHHHHHHTTEEEEEHHHHHH CS
  Mur_ligase   2 ihfigidgrgmsagalflalkGykvdGsdfies......lialGaaavvghdaani.........vvss.iskdnpeleaakepgipvesraeaLa 81 
                 +hf+gi+g+ m+a+a +l ++Gy v Gsd + +      l ++G++++ g +a+n+         vv++ i+++npelea+ e+   ++s++e+L 
  CCG93106.1  14 FHFLGICGTAMGAVASMLKDMGYVVGGSDENVYpplstfLSQKGIVVAEGYKAENLpkevdgtlvVVGNaIKRGNPELEAVLEKKYLFVSLPEILR 109
                 7********************************************************************************************996 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.6
                 HTT-EEEES-HGGG CS
  Mur_ligase  37 alGaaavvghdaan 50 
                  +G++ +++++++ 
  CCG93106.1 422 RKGIPSYFCSSPQD 435
                 68999999999884 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.2   6.9e+03      64      79 ..      24      39 ..      22      44 .. 0.70
   2 !   46.1   0.0   7.5e-16   4.5e-12       1      80 [.     322     399 ..     322     406 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
                  HHHHHCCHSSE.EEEEE CS
  Mur_ligase_C 64 fgrlasalads.lvvlg 79
                  +g++as+l+d+ +vv g
    CCG93106.1 24 MGAVASMLKDMgYVV-G 39
                  789999999995555.3 PP

  == domain 2  score: 46.1 bits;  conditional E-value: 7.5e-16
                   CTTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEES CS
  Mur_ligase_C   1 vkgRlevvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlgd 80 
                   vk+Rle++g   g++++dD +h+p+++ ++++a+r+ +p +r++ vf p +   +r + f++e++  +s +ad ++v ++
    CCG93106.1 322 VKRRLEILGDVCGIKILDDFGHHPTAICKTIQAIRQRYPGSRIWSVFEP-RSNTTRRAVFQEELPHSLS-FADGVIVSEV 399
                   79**********************************************7.6669999999999999999.6888888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3370.84
//
Query:       CCG93107.1  [L=238]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2053.77
//
Query:       CCG93108.1  [L=226]
Description: Cytosine/adenosine deaminase (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-29  102.3   0.0    2.5e-29  101.8   0.0    1.2  1  MafB19-deam      MafB19-like deaminase
    1.6e-24   85.7   0.0    2.4e-24   85.1   0.0    1.3  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-


Domain annotation for each model (and alignments):
>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.0   2.8e-33   2.5e-29       6     138 .]      73     212 ..      68     218 .. 0.89

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 2.8e-33
  MafB19-deam   6 afrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvygagn 103
                  ++ kal+++ +a++++e++igaviv d+k+++ g n+ e   ++taHaE++a++ A   l+++rl  +t+yvt+epC mC gai  +++ ++v+g ++
   CCG93108.1  73 FMGKALEKATEAFEKGEVPIGAVIVRDQKILGMGRNRVEECCDVTAHAEMEAIRNAQLLLGDWRLTATTIYVTKEPCLMCYGAILLSRIARVVFGIED 170
                  67899********************************************************************************************* PP

  MafB19-deam 104 pks.lnkLkvkekngrvelv......eddckeilkgffkklr 138
                  pk  + +  +  +ng ++l+       ++  e++k+ff  lr
   CCG93108.1 171 PKKgIFRPPTFFFNGGKKLEitsgirSEESLELMKRFFFVLR 212
                  *98866666666676666666677775566688998886655 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.0   2.7e-28   2.4e-24       3     100 ..      69     167 ..      67     168 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 2.7e-28
                      HHHHHHHHHHHHHHHHHTTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.TSSCETTEEEEEEE--BHHHHHHHHHHT-S CS
  dCMP_cyt_deam_1   3 kdekllelalkaakeaqkcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaakn.ggsklegatlyvtlePCsmCakaiiqsgik 95 
                       d++++ +al++a+ea ++ ++++Gaviv++++i++ g n+ ++  + t+HAE+ Ai++a    g ++l+ +t+yvt ePC mC  ai  s+i 
       CCG93108.1  69 VDNYFMGKALEKATEAFEKGEVPIGAVIVRDQKILGMGRNRVEECCDVTAHAEMEAIRNAQLLlGDWRLTATTIYVTKEPCLMCYGAILLSRIA 162
                      5899**********************************************************988***************************** PP

                      EEEEE CS
  dCMP_cyt_deam_1  96 kvvvg 100
                      +vv+g
       CCG93108.1 163 RVVFG 167
                      ***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1632.91
//
Query:       CCG93109.1  [L=292]
Description: Predicted aminomethyltransferase (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-10   39.8   0.0    1.4e-06   27.9   0.0    2.1  2  GCV_T     Aminomethyltransferase folate-binding domain
    1.2e-07   31.5   0.0    2.3e-07   30.6   0.0    1.4  1  GCV_T_C   Glycine cleavage T-protein C-terminal barrel domain


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.5e-10   1.4e-06      52     146 ..      27     118 ..      18     134 .. 0.90
   2 !   10.1   0.0   4.3e-05      0.38     227     254 ..     161     188 ..     140     190 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.5e-10
       GCV_T  52 evsGpdaaalLqrlltndisklkpgkatytlllnedGgvidDlivarldedefllvvnaankekdlawlekaaekkdldvevedvteelallalq 146
                 +  G+d++++L+  +++d+s+l++g++ +t++ln +G++  +l +a+++ d f++ ++ + +e   + l++     + +v++e++++++ l+   
  CCG93109.1  27 KAYGKDRTKYLNGQIPADLSSLPVGQSLHTAALNRKGRIDCELWIANQE-DAFYIDAPKESEESTEKRLTSFLV--ADKVSIEQLNDSYRLYHYF 118
                 567**********************************************.7******************99888..9999999999998776554 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 4.3e-05
       GCV_T 227 rdtlRlEaglrlyghdldeettPleagl 254
                 +++lRlEa ++ +g +l+ ++  lea l
  CCG93109.1 161 LESLRLEAMIPRWGFELTANVIALEAFL 188
                 789*****************99999966 PP

>> GCV_T_C  Glycine cleavage T-protein C-terminal barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   2.6e-11   2.3e-07      10      59 ..     227     273 ..     217     286 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.6e-11
     GCV_T_C  10 dgapllrggepilrdgevvGhvTSgaysptlgksialAyvkaelaklgte 59 
                 d    +++  +++++++ vG++TS++ys+  +k+ial+++++e+ k g+ 
  CCG93109.1 227 DS---IPQCVQLFDQNQAVGRLTSSCYSFGYEKPIALGFLRKEYRKEGNV 273
                 44...8888999*9*******************************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1852.01
//
Query:       CCG93110.1  [L=45]
Description: hypothetical protein MFUM_930020 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       156  (0.00870099); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.44
# Mc/sec: 308.10
//
Query:       CCG93111.1  [L=150]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0011   18.5   0.1     0.0029   17.1   0.1    1.8  1  HTH_24           Winged helix-turn-helix DNA-binding
     0.0012   18.9   0.5     0.0034   17.5   0.1    1.9  2  HTH_17           Helix-turn-helix domain
     0.0032   17.8   1.2      0.012   15.9   0.0    2.3  2  HTH_Tnp_1        Transposase
     0.0095   16.1   1.3      0.017   15.3   1.3    1.5  1  Pepsin-I3        Pepsin inhibitor-3-like repeated domain
     0.0098   15.8   1.2      0.027   14.4   0.1    2.1  2  HTH_11           HTH domain
  ------ inclusion threshold ------
      0.016   15.2   0.5      0.049   13.7   0.0    2.1  2  HTH_3            Helix-turn-helix
      0.039   14.0   0.0      0.097   12.7   0.0    1.6  1  HTH_20           Helix-turn-helix domain
      0.046   14.1   0.2        4.7    7.6   0.0    2.3  2  SWIRM            SWIRM domain
      0.047   13.4   0.6      0.066   12.9   0.6    1.2  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
      0.078   13.4   3.3        2.1    8.8   0.0    2.8  2  HARE-HTH         HB1, ASXL, restriction endonuclease HTH doma
      0.094   12.7   0.2       0.34   10.9   0.0    2.0  2  RXLR_WY          RXLR phytopathogen effector protein WY-domai
       0.14   12.7   3.2       0.22   12.0   3.2    1.6  1  FlgN             FlgN protein
       0.14   12.4   5.4        0.7   10.2   0.8    2.4  2  Tox-URI2         URI fold toxin 2
       0.15   11.9   0.0       0.35   10.7   0.0    1.5  1  HTH_IclR         IclR helix-turn-helix domain
       0.16   12.1   1.9       0.33   11.1   1.9    1.5  1  DUF2258          Uncharacterized protein conserved in archaea
       0.54   10.4   2.3          1    9.4   2.3    1.5  1  PspB             Phage shock protein B
        9.9    6.0   7.4         21    4.9   1.8    2.6  2  Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain


Domain annotation for each model (and alignments):
>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   2.7e-06    0.0029       7      31 ..      74     100 ..      70     104 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.7e-06
      HTH_24   7 kILelLqk..nprisqreLAerlglSp 31 
                  ILe+L+k  n +++ +eL+e+lg+ +
  CCG93111.1  74 SILEALRKagNEGLTVKELSEKLGVKI 100
                 6***********************865 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       6.5   6.9e+03       4      10 ..      11      17 ..       6      21 .. 0.59
   2 !   17.5   0.1   3.2e-06    0.0034       2      44 ..      87     133 ..      87     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.5
      HTH_17  4 veEaAel 10
                v+E+A+l
  CCG93111.1 11 VKELAKL 17
                4555554 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3.2e-06
      HTH_17   2 ltveEaAelLgvsrstvyrlir..rgelpaa.kiGrr.wriprsdle 44 
                 ltv+E++e Lgv+ + +y +     ++ p + kiG++ +ri +s +e
  CCG93111.1  87 LTVKELSEKLGVKINNLYSWFYttGKKTPGLiKIGKSkYRIEESTVE 133
                 8******************9954255777778888888***999775 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.3      0.97     1e+03      60      71 ..      14      25 ..       3      38 .. 0.49
   2 !   15.9   0.0   1.1e-05     0.012      12      43 ..      75     106 ..      72     144 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.97
   HTH_Tnp_1 60 ltaleeenrelk 71
                l++l +e +el+
  CCG93111.1 14 LAKLVQEKEELQ 25
                333333333332 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.1e-05
   HTH_Tnp_1  12 KariVreslepgksvsevArrhgvspnqLykW 43 
                 +++++r + ++g +v+e+ +++gv+ n Ly W
  CCG93111.1  75 ILEALRKAGNEGLTVKELSEKLGVKINNLYSW 106
                 78999*************************** PP

>> Pepsin-I3  Pepsin inhibitor-3-like repeated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.3   1.7e-05     0.017      36      73 ..       3      39 ..       1      40 [. 0.89

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.7e-05
   Pepsin-I3 36 lRdLtseEqsELktydaevtkYkeelksslqervkgLf 73
                l++Lts E++EL++ ++e+++ +e+++  ++++ + L+
  CCG93111.1  3 LKQLTSAEVKELAKLVQEKEELQEKVS-EIERKIQTLW 39
                789**********************96.6899999888 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.9     2e+03      32      47 ..      31      46 ..      29      53 .. 0.79
   2 !   14.4   0.1   2.6e-05     0.027       3      27 ..      73      98 ..      72      99 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.9
      HTH_11 32 vrrdIkaLeelgvpIe 47
                + r I++L + g+++ 
  CCG93111.1 31 IERKIQTLWKVGIKVP 46
                6688999999997775 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.6e-05
      HTH_11  3 lqilelLleargp.isgeeLAeeLnv 27
                ++ile L++a +  ++ +eL+e+L+v
  CCG93111.1 73 NSILEALRKAGNEgLTVKELSEKLGV 98
                68***********************8 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2       2.6   2.8e+03      15      19 ..      14      18 ..       3      36 .. 0.64
   2 ?   13.7   0.0   4.6e-05     0.049       1      30 [.      76     107 ..      76     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.6
                HHHHH CS
       HTH_3 15 LAekl 19
                LA+++
  CCG93111.1 14 LAKLV 18
                44433 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 4.6e-05
                 HHHHHH..HTTHHHHHHHHHHTSSHHHHHHHH CS
       HTH_3   1 lkelRk..qlglsqeeLAeklGvsrstisriE 30 
                 l++lRk    gl+ +eL+eklGv+ + ++ ++
  CCG93111.1  76 LEALRKagNEGLTVKELSEKLGVKINNLYSWF 107
                 68999999***************988887775 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.2e-05     0.097      15      42 ..      75     104 ..      74     105 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.2e-05
                 HHHHH..STCTTB-HHHHHHHHTS-HHHHH CS
      HTH_20  15 ilraL..araegltaselaerldlskntls 42 
                 il aL  a++eglt++el e l+++ n+l+
  CCG93111.1  75 ILEALrkAGNEGLTVKELSEKLGVKINNLY 104
                 89999***********************97 PP

>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2      0.05        53       9      57 ..       4      55 ..       1      66 [. 0.80
   2 ?    7.6   0.0    0.0045       4.7      36      81 ..      71     107 ..      69     111 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.05
       SWIRM  9 dslhpiEkellselfngkdktpeeYlkiRnkiialyr...enpkeyltvtea 57
                ++l++ E++ l++l+++k++ +e+  +i +ki  l++   + pk+++++  +
  CCG93111.1  4 KQLTSAEVKELAKLVQEKEELQEKVSEIERKIQTLWKvgiKVPKKRIEKIRV 55
                789999*********9999999999999999999999666666776665554 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0045
       SWIRM  36 iRnkiialyrenpkeyltvteaqkalkrrrltgidvnllsrihefL 81 
                 ++n i+++ r+  +e ltv+e +++l           +++++++++
  CCG93111.1  71 LKNSILEALRKAGNEGLTVKELSEKLG---------VKINNLYSWF 107
                 79********************54444.........3555555555 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6   6.2e-05     0.066     113     207 ..       9     104 ..       2     106 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.2e-05
                  THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTE.EEEEESTTEEEEEETT-SHHHHHHHHHHHCT--GGGEE CS
  Hydrolase_3 113 ksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelksklnkll.titssskgyleimpkgvsKgtalkklakelnisleevi 207
                  ++ k+  +  ++k++ +e+ se e++ ++++k+ i   k+++++++  +k++ +++     + ++++le ++k  + g ++k+l ++l+++ ++ +
   CCG93111.1   9 AEVKELAKLVQEKEELQEKVSEIERKIQTLWKVGIKVPKKRIEKIRVSVKKRGPEKGsIPGHLKNSILEALRKAGNEGLTVKELSEKLGVKINNLY 104
                  467888899999****************************************999985667889999************************99976 PP

>> HARE-HTH  HB1, ASXL, restriction endonuclease HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   1.3     0.086        91       3      32 ..      11      40 ..      10      60 .. 0.80
   2 ?    8.8   0.0     0.002       2.1       3      26 ..      71      95 ..      69     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.086
                HHHHHHHHHHHH-S-EEHHHHHHHHHHHTT CS
    HARE-HTH  3 lkeaAkqVLeeegrpltvkeIwekiqekgl 32
                +ke Ak V e+e    +v+eI +kiq +  
  CCG93111.1 11 VKELAKLVQEKEELQEKVSEIERKIQTLWK 40
                68999999999999999****999997655 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.002
                HHHHHHHHHHHH-.S-EEHHHHHHH CS
    HARE-HTH  3 lkeaAkqVLeeeg.rpltvkeIwek 26
                lk+ +++ L+++g ++ltvke+ ek
  CCG93111.1 71 LKNSILEALRKAGnEGLTVKELSEK 95
                68889999**************998 PP

>> RXLR_WY  RXLR phytopathogen effector protein WY-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.8   7.2e+03      26      32 ..      76      82 ..      75      84 .. 0.79
   2 ?   10.9   0.0   0.00033      0.34      28      41 ..     110     123 ..     107     130 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.8
                HHHHHTS CS
     RXLR_WY 26 leslrkt 32
                le+lrk 
  CCG93111.1 76 LEALRKA 82
                7999996 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00033
                 HHHTSTTTHHHHHH CS
     RXLR_WY  28 slrktPglkklaks 41 
                 + +ktPgl+k++ks
  CCG93111.1 110 TGKKTPGLIKIGKS 123
                 569*********98 PP

>> FlgN  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.2   0.00021      0.22      32      66 ..       6      40 ..       2     101 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00021
                HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        FlgN 32 LkagdieaLeelleekqellekleqleqkraklla 66
                L+++++++L +l++ek+el ek++++e+k++ l +
  CCG93111.1  6 LTSAEVKELAKLVQEKEELQEKVSEIERKIQTLWK 40
                8999*************************998875 PP

>> Tox-URI2  URI fold toxin 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.3     0.037        39      13      41 ..      31      60 ..      19      84 .. 0.78
   2 ?   10.2   0.8   0.00067       0.7      18      51 ..     112     147 ..      98     150 .] 0.76

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.037
    Tox-URI2 13 iydkdeeevlKlGisk..erIkesglskrlr 41
                i  k +  ++K+Gi    +rI++   s ++r
  CCG93111.1 31 IERKIQ-TLWKVGIKVpkKRIEKIRVSVKKR 60
                444433.5*****976558998877777766 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00067
    Tox-URI2  18 ee..evlKlGiskerIkesglskrlrrqlrklekan 51 
                 ++   + K+G+sk rI+es   + + ++ +k ek++
  CCG93111.1 112 KKtpGLIKIGKSKYRIEESTVEPEALQKSEKDEKIK 147
                 3333799************99998888887777765 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00033      0.35       8      30 ..      75      98 ..      74     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00033
                HHCT-CTTBSS.-BHHHHHHHHTS CS
    HTH_IclR  8 iLdalaeapqe.ltlselArrtgl 30
                iL+al++a+ e lt++el++++g+
  CCG93111.1 75 ILEALRKAGNEgLTVKELSEKLGV 98
                9******999957*********96 PP

>> DUF2258  Uncharacterized protein conserved in archaea (DUF2258)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.9   0.00031      0.33      14      72 ..       2      59 ..       1      63 [. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
                HHHHHHHHHTCCCCHTTSS.HHHHHHHHHHHHHHHHHHHHCCTT--TTSEEEEEEEEEE CS
     DUF2258 14 KlRrvlfaalsklvkkkkeekkeiaraiaeLNkklYevlveklkidKldvvrirveyev 72
                Kl++ + a +++l+k   +ek+e  ++++e+ +k+ ++    +k++K+ + +irv+ ++
  CCG93111.1  2 KLKQLTSAEVKELAK-LVQEKEELQEKVSEIERKIQTLWKVGIKVPKKRIEKIRVSVKK 59
                888889999999999.7788999**************9999*********999998765 PP

>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.3   0.00099         1      33      62 ..       4      33 ..       1      37 [. 0.92

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00099
        PspB 33 kglsaedekrLeellekAekleeRietLEr 62
                k+l++ + k+L++l+++ e+l+e ++ +Er
  CCG93111.1  4 KQLTSAEVKELAKLVQEKEELQEKVSEIER 33
                799*************************98 PP

>> Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.8      0.02        21       9      27 ..       3      21 ..       2      24 .. 0.80
   2 ?    3.5   0.1     0.055        57      12      19 ..      87      94 ..      85      99 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.02
                     HHTSBHHHHHHHHHHHHHH CS
  Ribosomal_L12_N  9 ikeltvLElseLvkalEek 27
                     +k+lt  E++eL k  +ek
       CCG93111.1  3 LKQLTSAEVKELAKLVQEK 21
                     7888888888888888876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.055
                     SBHHHHHH CS
  Ribosomal_L12_N 12 ltvLElse 19
                     ltv Else
       CCG93111.1 87 LTVKELSE 94
                     66666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2037  (0.113615); expected 358.6 (0.02)
Passed bias filter:                      958  (0.053433); expected 358.6 (0.02)
Passed Vit filter:                       142  (0.00792013); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 1013.11
//
Query:       CCG93112.1  [L=107]
Description: TPR repeats containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-17   62.8   2.8    7.6e-09   35.0   0.6    3.1  3  TPR_1       Tetratricopeptide repeat
      2e-17   61.8   2.6    5.5e-07   29.2   0.8    3.1  3  TPR_2       Tetratricopeptide repeat
      4e-15   54.7   4.9    4.2e-06   26.6   0.6    3.1  3  TPR_8       Tetratricopeptide repeat
    1.1e-12   47.4   0.7    2.8e-05   24.2   0.0    3.0  3  TPR_17      Tetratricopeptide repeat
    2.1e-10   40.1   0.8    5.5e-07   29.2   0.0    2.4  2  TPR_11      TPR repeat
    2.4e-10   40.9   2.3    9.5e-06   26.2   0.1    1.9  2  TPR_16      Tetratricopeptide repeat
    3.9e-08   33.7   0.1    2.5e-07   31.1   0.0    1.9  2  TPR_19      Tetratricopeptide repeat
    4.6e-08   33.2   0.2    0.00037   21.1   0.1    2.9  3  TPR_14      Tetratricopeptide repeat
    1.8e-06   28.1   0.8     0.0038   17.5   0.2    2.8  3  TPR_12      Tetratricopeptide repeat
    2.4e-06   27.2   0.6     0.0004   20.2   0.1    3.1  3  TPR_7       Tetratricopeptide repeat
    6.4e-06   26.1   1.7    0.00017   21.6   0.1    2.7  3  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
     0.0005   19.8   2.4       0.18   11.8   0.4    2.7  3  TPR_10      Tetratricopeptide repeat
    0.00053   20.4   0.0     0.0012   19.3   0.0    1.5  1  BTAD        Bacterial transcriptional activator domain
     0.0007   19.8   0.3    0.00084   19.5   0.3    1.1  1  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
     0.0013   17.9   0.1       0.24   10.4   0.0    2.0  2  ChAPs       ChAPs (Chs5p-Arf1p-binding proteins)
     0.0034   17.9   2.0       0.39   11.5   0.2    3.0  3  TPR_6       Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   16.0   0.0      0.046   13.9   0.0    2.1  2  TPR_9       Tetratricopeptide repeat
      0.013   15.6   0.2       0.61   10.1   0.1    2.2  2  DUF3856     Domain of Unknown Function (DUF3856)
      0.045   12.6   0.0       0.19   10.6   0.0    1.6  2  DUF5588     Family of unknown function (DUF5588)
       0.06   13.6   1.3         18    5.9   0.1    3.0  3  PPR         PPR repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   6.7e-08     6e-05       4      34 .]       7      37 ..       5      37 .. 0.96
   2 !   35.0   0.6   8.4e-12   7.6e-09       2      34 .]      39      71 ..      38      71 .. 0.94
   3 ?    3.9   0.0     0.057        51       9      22 ..      80      93 ..      73      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 6.7e-08
                HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  4 lynlGnayfklgkydeAleyyekALelnPnn 34
                +y lGn  +  g++++A  yy k +e +P++
  CCG93112.1  7 FYELGNEALAVGDLEKAKFYYTKSVETDPSY 37
                799**************************97 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 8.4e-12
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  2 kalynlGnayfklgkydeAleyyekALelnPnn 34
                + +  l++ay+klg+y++ +++ +kALel+P++
  CCG93112.1 39 EGWQALAMAYYKLGEYEKSIDANKKALELRPED 71
                57889**************************86 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.057
                HHHHHTT-HHHHHH CS
       TPR_1  9 nayfklgkydeAle 22
                +ay++lg+  eA++
  CCG93112.1 80 LAYMRLGNKIEAEK 93
                79999999999987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.4e-07   0.00031       4      33 ..       7      36 ..       5      37 .. 0.94
   2 !   29.2   0.8   6.2e-10   5.5e-07       2      34 .]      39      71 ..      38      71 .. 0.96
   3 !   10.7   0.0   0.00053      0.47       3      23 ..      74      94 ..      72      94 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.4e-07
       TPR_2  4 lynlGlayyklgdyeeAleafekAleldPn 33
                 y+lG+ +++ gd+e+A+ ++ k++e dP 
  CCG93112.1  7 FYELGNEALAVGDLEKAKFYYTKSVETDPS 36
                699*************************97 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 6.2e-10
       TPR_2  2 ealynlGlayyklgdyeeAleafekAleldPnn 34
                e++ +l++ayyklg+ye+ ++a +kAlel P++
  CCG93112.1 39 EGWQALAMAYYKLGEYEKSIDANKKALELRPED 71
                79*****************************86 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00053
       TPR_2  3 alynlGlayyklgdyeeAlea 23
                ++  l lay++lg+  eA++a
  CCG93112.1 74 VWTSLSLAYMRLGNKIEAEKA 94
                68889*************986 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.3e-06    0.0012       5      33 ..       8      36 ..       7      37 .. 0.93
   2 !   26.6   0.6   4.7e-09   4.2e-06       2      34 .]      39      71 ..      38      71 .. 0.95
   3 !   10.3   0.0   0.00075      0.67       3      23 ..      74      94 ..      74      98 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.3e-06
                HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  5 ynlgsiylklgdyeeAkeyyekaleldpd 33
                y lg+  l  gd+e+Ak yy k +e dp+
  CCG93112.1  8 YELGNEALAVGDLEKAKFYYTKSVETDPS 36
                8899999********************97 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 4.7e-09
                CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34
                e ++ l+++y klg+ye+++ + +kalel+p++
  CCG93112.1 39 EGWQALAMAYYKLGEYEKSIDANKKALELRPED 71
                679****************************86 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00075
                HHHHHHHHHHHTT-HHHHHHH CS
       TPR_8  3 ayynlgsiylklgdyeeAkey 23
                ++  l+++y+ lg++ eA+++
  CCG93112.1 74 VWTSLSLAYMRLGNKIEAEKA 94
                6999**************986 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.1   9.9e+02      17      33 ..       8      24 ..       7      25 .. 0.83
   2 !   24.2   0.0   3.1e-08   2.8e-05       1      32 [.      26      57 ..      26      59 .. 0.94
   3 !   19.8   0.0     8e-07   0.00072       3      34 .]      62      93 ..      60      93 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.1
      TPR_17 17 nnLAelllknGdlmtAr 33
                ++L++  l  Gdl++A+
  CCG93112.1  8 YELGNEALAVGDLEKAK 24
                78888889999999997 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 3.1e-08
      TPR_17  1 lylkaleldPnnadaynnLAelllknGdlmtA 32
                +y+k++e dP++++ ++ LA +++k+G++++ 
  CCG93112.1 26 YYTKSVETDPSYFEGWQALAMAYYKLGEYEKS 57
                6****************************986 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 8e-07
      TPR_17  3 lkaleldPnnadaynnLAelllknGdlmtArq 34
                +kalel P ++ +++ L  ++ ++G++ +A++
  CCG93112.1 62 KKALELRPEDSMVWTSLSLAYMRLGNKIEAEK 93
                69**************************9985 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   1.2e-05     0.011       1      42 []      11      52 ..      11      52 .. 0.91
   2 !   29.2   0.0   6.1e-10   5.5e-07       3      42 .]      47      86 ..      45      86 .. 0.98

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42
                G++  + G++e+A   Y k ++ dP++ e + +L+ ayyk+G
  CCG93112.1 11 GNEALAVGDLEKAKFYYTKSVETDPSYFEGWQALAMAYYKLG 52
                5666677999999999*************************9 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 6.1e-10
      TPR_11  3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42
                ayy++G+ye++i a kkAl+l+P++  ++  L lay+++G
  CCG93112.1 47 AYYKLGEYEKSIDANKKALELRPEDSMVWTSLSLAYMRLG 86
                8*************************************98 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   1.1e-08   9.5e-06       1      67 [.       8      71 ..       8      72 .. 0.95
   2 !   20.6   0.2   5.8e-07   0.00052       2      59 ..      43      98 ..      43     101 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.1e-08
      TPR_16  1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67
                ++l+++al+ gd ++A  +++  ++ d   P   e + +l+ a++++g++++ +++ ++al+  p +
  CCG93112.1  8 YELGNEALAVGDLEKAKFYYTKSVETD---PSYFEGWQALAMAYYKLGEYEKSIDANKKALELRPED 71
                789**************9998888888...********************************99987 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 5.8e-07
      TPR_16  2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyra 59
                ala+a++++g+y++ + a + al+++   P++   +  l +a+ r+g+  eA+ a ++a
  CCG93112.1 43 ALAMAYYKLGEYEKSIDANKKALELR---PEDSMVWTSLSLAYMRLGNKIEAEkASFKA 98
                69************************...99999**************99999888776 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   2.8e-10   2.5e-07       1      63 [.      14      76 ..      14      80 .. 0.94
   2 !    7.2   0.0    0.0079       7.1      15      46 ..      62      93 ..      58      94 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 2.8e-10
      TPR_19  1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryas 63
                +la gd++ A  ++++  + dp + e + +LA a+++lg++++ +++ ++++e  p d+ +++
  CCG93112.1 14 ALAVGDLEKAKFYYTKSVETDPSYFEGWQALAMAYYKLGEYEKSIDANKKALELRPEDSMVWT 76
                5888*****************************************************998885 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0079
      TPR_19 15 eqalqedpknaearllLAeallalgqldeAea 46
                ++al+  p+++ ++  L  a++ lg+  eAe+
  CCG93112.1 62 KKALELRPEDSMVWTSLSLAYMRLGNKIEAEK 93
                789************************99997 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   9.1e-05     0.081       5      42 ..       8      45 ..       6      45 .. 0.94
   2 !   21.1   0.1   4.1e-07   0.00037       2      41 ..      39      78 ..      38      81 .. 0.93
   3 ?    3.1   0.0      0.25   2.3e+02       5      23 ..      76      94 ..      74      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.1e-05
      TPR_14  5 lalaeallalGdpdeAiallrralalaPddaeawllla 42
                ++l+   la Gd+++A  ++ + ++++P+  e w +la
  CCG93112.1  8 YELGNEALAVGDLEKAKFYYTKSVETDPSYFEGWQALA 45
                78899999***************************998 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 4.1e-07
      TPR_14  2 eallalaeallalGdpdeAiallrralalaPddaeawlll 41
                e ++ala a++ lG+++++i++ ++al+l P+d  +w+ l
  CCG93112.1 39 EGWQALAMAYYKLGEYEKSIDANKKALELRPEDSMVWTSL 78
                78***********************************866 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.25
      TPR_14  5 lalaeallalGdpdeAial 23
                  l  a+++lG+  eA+++
  CCG93112.1 76 TSLSLAYMRLGNKIEAEKA 94
                567889******9999985 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.016        14      50      74 ..       9      33 ..       7      36 .. 0.85
   2 !   17.5   0.2   4.2e-06    0.0038      50      76 ..      43      69 ..      39      70 .. 0.73
   3 ?    1.6   0.0       0.4   3.5e+02       6      24 ..      75      93 ..      70      98 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.016
      TPR_12 50 nLgrlyralgryeeAlelleealai 74
                 Lg   +a g++e+A  +++++++ 
  CCG93112.1  9 ELGNEALAVGDLEKAKFYYTKSVET 33
                688888999************9986 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 4.2e-06
      TPR_12 50 nLgrlyralgryeeAlelleealaiae 76
                +L+++y++lg+ye+ +++ ++al++++
  CCG93112.1 43 ALAMAYYKLGEYEKSIDANKKALELRP 69
                677778888888888888888877765 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.4
      TPR_12  6 lnnlaavlrrlgrydeAle 24
                ++ l ++++rlg+  eA++
  CCG93112.1 75 WTSLSLAYMRLGNKIEAEK 93
                5567788888888777776 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.15   1.4e+02      11      31 ..      16      34 ..       5      38 .. 0.77
   2 !   20.2   0.1   4.5e-07    0.0004       3      32 ..      42      71 ..      41      72 .. 0.85
   3 ?    0.9   0.0      0.67     6e+02       4      18 ..      77      91 ..      74      94 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.15
       TPR_7 11 rlGdyeeAielyeqsLaltkd 31
                ++Gd e+A  +y++s   + d
  CCG93112.1 16 AVGDLEKAKFYYTKSV--ETD 34
                5899999999999944..444 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 4.5e-07
       TPR_7  3 lnLarlysrlGdyeeAielyeqsLaltkdp 32
                 +La +y +lG+ye+ i+ ++++L+l+ ++
  CCG93112.1 42 QALAMAYYKLGEYEKSIDANKKALELRPED 71
                58********************77776554 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.67
       TPR_7  4 nLarlysrlGdyeeA 18
                 L  +y rlG+  eA
  CCG93112.1 77 SLSLAYMRLGNKIEA 91
                67789****997666 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.1   1.9e+03      15      32 ..      18      35 ..      15      37 .. 0.77
   2 !   21.6   0.1   1.9e-07   0.00017       7      34 ..      44      71 ..      43      74 .. 0.95
   3 ?    2.6   0.0      0.16   1.4e+02       7      20 ..      78      91 ..      77      96 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.1
                T-HHHHHHHHHHHHHHTT CS
  Fis1_TPR_C 15 geYseArryvdalLeiEP 32
                g+ ++A+ y     e +P
  CCG93112.1 18 GDLEKAKFYYTKSVETDP 35
                788899988888777777 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 1.9e-07
                HHHHHHHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C  7 lAlGhyklgeYseArryvdalLeiEPen 34
                lA+++yklgeY+++   ++  Le+ Pe 
  CCG93112.1 44 LAMAYYKLGEYEKSIDANKKALELRPED 71
                8***********************9986 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.16
                HHHHHHHHT-HHHH CS
  Fis1_TPR_C  7 lAlGhyklgeYseA 20
                l+l++++lg+  eA
  CCG93112.1 78 LSLAYMRLGNKIEA 91
                89*******97666 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.8   1.6e+03       8      21 ..      10      23 ..       8      33 .. 0.59
   2 !   11.8   0.4    0.0002      0.18       8      32 ..      44      68 ..      42      68 .. 0.93
   3 !    6.7   0.0    0.0076       6.8       7      23 ..      77      93 ..      76      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.8
      TPR_10  8 LanalrqrgrydeA 21
                L+n   ++g++++A
  CCG93112.1 10 LGNEALAVGDLEKA 23
                45555555555555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0002
      TPR_10  8 LanalrqrgrydeAealleealair 32
                La+a++++g+y+++ +  ++al++r
  CCG93112.1 44 LAMAYYKLGEYEKSIDANKKALELR 68
                9****************99999986 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0076
      TPR_10  7 NLanalrqrgrydeAea 23
                 L+ a+ ++g+  eAe+
  CCG93112.1 77 SLSLAYMRLGNKIEAEK 93
                6999***********97 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.3e-06    0.0012      42     117 ..      18      93 ..      12      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.3e-06
                 GGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH CS
        BTAD  42 adleagewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALe 117
                 +dle+ ++  ++ ++ + + +e  +ala a  +lG++e+ ++  ++++++ P +   +  l +A++r+G++ eA +
  CCG93112.1  18 GDLEKAKFYYTKSVETDPSYFEGWQALAMAYYKLGEYEKSIDANKKALELRPEDSMVWTSLSLAYMRLGNKIEAEK 93 
                 5666667777777777788889999************************************************987 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.3   9.3e-07   0.00084       4      78 ..      19      94 ..      16      98 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 9.3e-07
                -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3  4 nyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaa 78
                ++++A f++ + +++++   e   +lA ++y++g+y++ ++  +ka +l++++  ++  +  ++  L++  eA++a
  CCG93112.1 19 DLEKAKFYYTKSVETDPSYFEGWQALAMAYYKLGEYEKSIDANKKAlELRPEDSMVWTSLSLAYMRLGNKIEAEKA 94
                5788999999999888888888999************************************************987 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00027      0.24     255     287 ..      25      57 ..      14      59 .. 0.86
   2 !    6.6   0.0    0.0038       3.4     254     283 ..      58      87 ..      53      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
                 HHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHH CS
       ChAPs 255 evakravksaPsefktWalLvkvYikledienA 287
                    +++v++ Ps f+ W  L+  Y kl+++e+ 
  CCG93112.1  25 FYYTKSVETDPSYFEGWQALAMAYYKLGEYEKS 57 
                 556799**********************99975 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0038
                 HHHHHHHHHH-TT-HHHHHHHHHHHHHTT- CS
       ChAPs 254 levakravksaPsefktWalLvkvYikled 283
                 +++ k+a ++ P +++ W+ L+  Y++l++
  CCG93112.1  58 IDANKKALELRPEDSMVWTSLSLAYMRLGN 87 
                 567899********************9986 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.092        82       5      31 ..       9      35 ..       7      37 .. 0.66
   2 !   11.5   0.2   0.00043      0.39       6      31 ..      44      69 ..      42      71 .. 0.82
   3 ?    0.1   0.0       1.8   1.6e+03       7      20 ..      79      92 ..      77      96 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.092
                HHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6  5 klalsyrklgdtdkAlealerlikeYP 31
                 l+   ++ gd +kA+ ++ + ++  P
  CCG93112.1  9 ELGNEALAVGDLEKAKFYYTKSVETDP 35
                4453333326999**999998777766 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00043
                HHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6  6 lalsyrklgdtdkAlealerlikeYP 31
                la++y+klg+++k+++a ++ ++  P
  CCG93112.1 44 LAMAYYKLGEYEKSIDANKKALELRP 69
                7*******9*****998666666655 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.8
                HHHHHHHHHHHHHH CS
       TPR_6  7 alsyrklgdtdkAl 20
                 l+y +lg++ +A 
  CCG93112.1 79 SLAYMRLGNKIEAE 92
                57899988887775 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.1e-05     0.046       7      62 ..      16      71 ..      10      76 .. 0.87
   2 ?    2.3   0.0      0.22   1.9e+02      22      45 ..      65      88 ..      62      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.1e-05
       TPR_9  7 reedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62
                   d e+a  ++   +  +P   e +   ++++++lG +++ +++   +l+l p++
  CCG93112.1 16 AVGDLEKAKFYYTKSVETDPSYFEGWQALAMAYYKLGEYEKSIDANKKALELRPED 71
                56677778888888899999999**********************99999999987 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.22
       TPR_9 22 lllaPddpeerrdRGlllaqlGcl 45
                l l P+d   +    l++++lG+ 
  CCG93112.1 65 LELRPEDSMVWTSLSLAYMRLGNK 88
                88999999999999*******985 PP

>> DUF3856  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00068      0.61      59      83 ..      42      66 ..      34      70 .. 0.91
   2 ?    3.6   0.0      0.07        63      54      77 ..      71      94 ..      66     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00068
                HHHHHHHHHTT-HHHHHHHHHHHHH CS
     DUF3856 59 aglsealaklgrydealesadkalr 83
                 +l+ a+ klg+y++++ + +kal+
  CCG93112.1 42 QALAMAYYKLGEYEKSIDANKKALE 66
                5799******************996 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.07
                HHHHHHHHHHHHHHTT-HHHHHHH CS
     DUF3856 54 dalchaglsealaklgrydeales 77
                d++++++ls a+++lg+  ea ++
  CCG93112.1 71 DSMVWTSLSLAYMRLGNKIEAEKA 94
                899*************87776555 PP

>> DUF5588  Family of unknown function (DUF5588)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.15   1.3e+02     139     173 ..      18      52 ..      14      54 .. 0.89
   2 ?   10.6   0.0   0.00021      0.19     138     185 ..      51      98 ..      43     106 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.15
     DUF5588 139 qnlektilclqklislhpfnpwswgklaeaylslg 173
                  +lek+ +   k +   p     w  la ay +lg
  CCG93112.1  18 GDLEKAKFYYTKSVETDPSYFEGWQALAMAYYKLG 52 
                 58999999999*******99999********9998 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00021
     DUF5588 138 lqnlektilclqklislhpfnpwswgklaeaylslgpalsasiassqk 185
                 l + ek+i   +k + l p +   w+ l+ ay+ lg  + a  as + 
  CCG93112.1  51 LGEYEKSIDANKKALELRPEDSMVWTSLSLAYMRLGNKIEAEKASFKA 98 
                 668899999*******************************99988665 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.7   3.3e+03      14      21 ..      18      25 ..      16      29 .. 0.79
   2 ?    5.4   0.1     0.028        25       3      20 ..      41      58 ..      40      60 .. 0.88
   3 ?    5.9   0.1      0.02        18       2      21 ..      74      93 ..      73      94 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.7
         PPR 14 GkleeAle 21
                G+le+A+ 
  CCG93112.1 18 GDLEKAKF 25
                999*9975 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.028
         PPR  3 ynslIsgycknGkleeAl 20
                + +l ++y k G++e+ +
  CCG93112.1 41 WQALAMAYYKLGEYEKSI 58
                678999*********986 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.02
         PPR  2 tynslIsgycknGkleeAle 21
                +++sl  +y + G+  eA++
  CCG93112.1 74 VWTSLSLAYMRLGNKIEAEK 93
                69***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 772.96
//
Query:       CCG93113.1  [L=512]
Description: Uroporphyrinogen-III methylase and Uroporphyrinogen-III synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-48  165.2   0.0    2.2e-48  164.6   0.0    1.3  1  HEM4          Uroporphyrinogen-III synthase HemD
    2.3e-48  164.9   0.0    4.3e-48  164.1   0.0    1.4  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases


Domain annotation for each model (and alignments):
>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.6   0.0   2.5e-52   2.2e-48       2     232 .]     270     499 ..     269     499 .. 0.96

  Alignments for each domain:
  == domain 1  score: 164.6 bits;  conditional E-value: 2.5e-52
                 HHHHHHHHTTEEEEE---EECCECCHHHHHHHHHT.....--SEEEE--HHHHHHHHHHHHHTT---HHHHHCSEEESSHHHHHHHHHTT---SEE-.. CS
        HEM4   2 elaealearGaeplelPlieiepaedraelraalddleagkydwliftSanavealfealkreeedvkalaslkvaavGpaTaraLeelglrvdlvpse 100
                 +la++l ++Gae+le+P+i+i p + +a+ ++ l++++   ydwl+ftS++av+++f++  + e d++ l ++k+ a+G++Tara+ ++ l+vd++p+ 
  CCG93113.1 270 RLAKRLIELGAEVLEIPTIRIIPQPLDAKQKRILENID-AFYDWLLFTSPTAVDIFFDQFLQLENDIRRLGKVKLGAIGKSTARAIASFYLHVDVIPE- 366
                 899********************************998.88********************************************************9. PP

                 SSSHHHHGGGS-..---EEEEEE-SS.S--HHHHHHHHHTTEEEEEE-SEEEEE-HHHHHHHHHHHHTT--SEEEESSHHHHHHHHHH-S-HHHHHCTS CS
        HEM4 101 egtaegLaeelae.slagkrvlllrgeiarddlaegLeergaevdevevYetvpaeeepeelkealkagevdavvftSpstvrnllellkdegdelkev 198
                 ++t+++L e + +  + g r+ll+r+  a+d la+ L+ +ga+vd   +Y  +p++e++   +e++k   +++++f+S+s+vr +++l  + +d     
  CCG93113.1 367 KFTSMSLGECFYQrGIEGVRFLLPRSSLADDSLANVLKTQGASVDQWSLYAIEPETEDVRGHRERFKHIGAHWILFASASSVRYWHQLNLQCHDTSLIP 465
                 *********99994555599********************************************************************88877888899 PP

                 EEEEESHHHHHHHHHTT---SEEETS--HHHHHH CS
        HEM4 199 kvaaiGptTaealkklglkvdvvaeeptaeglva 232
                 kv++iGp T++alk++  +v v+++e++++gl++
  CCG93113.1 466 KVVSIGPLTTKALKDFQQEVYVESKEHSIDGLIE 499
                 *******************************985 PP

>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.1   0.0   4.8e-52   4.3e-48       2     212 ..       9     220 ..       8     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: 164.1 bits;  conditional E-value: 4.8e-52
  TP_methylase   2 lylVGvGpGdpellTvrAlralktadvvlgddsr.aleilldllaeel.eleapmgkekepleeayeeiaealaealragkdVvllvsGDPlvygtg 96 
                   ++lVG+GpGdp llT++A +++++ad +++d  +  +eil d++   + +++  + +    ++  ++ei+++l+ ++++gk+Vv+l++GDPl++g+g
    CCG93113.1   9 VFLVGAGPGDPLLLTLKAKELIEKADFIFYDY-LcNPEIL-DWASNHCiKVYVGKIAG--KAAYSQREIEQMLISKAAEGKNVVRLKGGDPLLFGRG 101
                   899*************************9888.6344444.66655545555555555..66667******************************** PP

  TP_methylase  97 selvealrareagieveviPGvsslqaaaarlgiplteggevlsvl.....lpglakeeereleallangdtlvllkaprklaelaelLkea.lydd 187
                   +e++eal++   gi++e++PGvss+ a++a++giplt+++ ++ ++     +++ +k+++  +e +++ ++t v+l++++++  ++  L+e+ ++++
    CCG93113.1 102 GEEAEALKQ--SGIPFEIVPGVSSALAVPAYAGIPLTHRNYASVLTivtghEDPAKKSSAIGWETVAKLKGTKVILMGVERIGAIVSSLIESgMDPK 196
                   *********..*****************************99999999**9444466778888888888***********************99997 PP

  TP_methylase 188 ttpvavveragtedervvrgtleel 212
                   t p+av++ ++ + ++vv++tl+++
    CCG93113.1 197 T-PLAVISWGTFPYQKVVESTLGDI 220
                   7.********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3612.13
//
Query:       CCG93114.1  [L=299]
Description: Porphobilinogen deaminase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-66  224.3   0.0    1.2e-66  224.1   0.0    1.1  1  Porphobil_deam   Porphobilinogen deaminase, dipyromethane cof
    9.9e-13   48.3   0.2      2e-12   47.3   0.2    1.5  1  Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain


Domain annotation for each model (and alignments):
>> Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofactor binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.1   0.0   1.4e-70   1.2e-66       1     203 [.       4     215 ..       4     216 .. 0.91

  Alignments for each domain:
  == domain 1  score: 224.1 bits;  conditional E-value: 1.4e-70
  Porphobil_deam   1 irigtRkSkLAlaqaelvaeaLke...eeeveivtiktkGDkildk.pLakiggkglFtkeleeaLlegeidlaVhSlKDlptelpeglelaavl 91 
                     + igtR+S+LAl+q++ ++++Lk+   + e+++++ikt+GD+  d  +L+ i+++g+Ftke+e++Lle eidlaVhSlKDlp+e+p+gle+aa++
      CCG93114.1   4 LVIGTRGSPLALIQTQSIIDRLKQeytDLEIKTKIIKTTGDQLCDYeHLEAIQQRGIFTKEIEKKLLEAEIDLAVHSLKDLPVEMPQGLEIAAIP 98 
                     68********************774434448999*********99669*********************************************** PP

  Porphobil_deam  92 kredprDvlvvks...sleelpegavvgTsSlRRkaqlkklrpdlevkdlRGnvdtRlrkldeg.eydaiiLAaAGLkRlgleeri..sev.lsp 179
                     +redprD+ v      + + l++ga+v+ +S+RR+ ql ++rpdl+v+++RGnv+tRl++l+e+ e+ ++iLA AG+kRlg++ +     + l +
      CCG93114.1  99 PREDPRDCWVS-LhypHPDGLEPGAIVAVGSPRRANQLLRKRPDLRVVPIRGNVETRLKRLRENkEWMGTILAIAGIKRLGIDLSSffC-TpLGM 191
                     **********5.13566788999**************************************55538***************86665433.25999 PP

  Porphobil_deam 180 eellpavgQGalavevrkedeell 203
                     +++l a+gQGala+e+r++d++++
      CCG93114.1 192 DWMLAAPGQGALALETRQGDKRTK 215
                     ********************9876 PP

>> Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.2   2.2e-16     2e-12       3      74 ..     229     297 ..     227     298 .. 0.87

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 2.2e-16
                      HHHHHHHHHHHTT--TTSSEEEEEEEETTE.EEEEEEEE-TTS..S-EEEEEEEE-GGGHHHHHHHHHHHHH CS
  Porphobil_deamC   3 evlaERallkeLeGGCsvPiGvyaeveaneelkLkglvlsldglksaveeaeakgeleeaeelGkklaeell 74 
                      ev aER++l eL+GGC + +G++a+ve+ + l L+g+ + ++g+  + +e ++ g+++ea++lG++la  l+
       CCG93114.1 229 EVCAERSFLYELGGGCRAAVGAMAKVEGSK-LVLYGIWW-PEGSL-RPKEGKVVGQIQEAKKLGQELAHLLK 297
                      799**********************99756.****9755.66654.59999999999***********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2189.33
//
Query:       CCG93115.1  [L=354]
Description: Glutamyl-tRNA reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-43  146.4   0.3    3.7e-42  143.5   0.0    2.0  2  GlutR_N          Glutamyl-tRNAGlu reductase, N-terminal domai
    1.6e-38  131.9   0.0    3.3e-38  130.9   0.0    1.6  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    0.00011   22.7   0.1     0.0004   20.9   0.1    2.0  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    0.00042   20.7   0.0     0.0009   19.6   0.0    1.5  1  NAD_binding_7    Putative NAD(P)-binding
  ------ inclusion threshold ------
      0.012   15.0   0.0      0.019   14.3   0.0    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.019   14.2   0.0      0.024   13.9   0.0    1.2  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      0.023   14.9   0.0      0.047   14.0   0.0    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.04   13.9   0.0       0.13   12.3   0.0    1.8  2  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom


Domain annotation for each model (and alignments):
>> GlutR_N  Glutamyl-tRNAGlu reductase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5   0.0   1.7e-45   3.7e-42       2     146 .]       8     156 ..       8     156 .. 0.94
   2 ?    0.9   0.0      0.16   3.5e+02     113     145 ..     195     229 ..     173     230 .. 0.74

  Alignments for each domain:
  == domain 1  score: 143.5 bits;  conditional E-value: 1.7e-45
     GlutR_N   2 ginhktapvelreklafseeelkellkel.ee.kvkeaviLsTCNRtEiylsaeeeeeaseellellaevsleelk..eklyvlegeeavrHlfrVasG 96 
                 g+++ t ++elre++af +ee+ ++l+ + e  +++eav+LsTCNR+E+++++++ ++as++  e+l+ ++++++    + ++++g+++++Hlf++asG
  CCG93115.1   8 GLSFDTSSIELREQVAFRSEEYPQALSMMkEMmQLEEAVLLSTCNRVEFFAVSKDPDQASKSWSEFLKIYHKKQFPfeLYSHFYKGKNCIEHLFELASG 106
                 7899************************96556888***************999999**********98888887754688899*************** PP

     GlutR_N  97 LdSlvlGEdqIlgQvkeayelakeagtlgkvLerlfqkaikvakrvrtet 146
                 L+S+v+GE++IlgQ+keay  ak++g++gk+L++lfq+ +++ak +r+ t
  CCG93115.1 107 LKSMVVGETEILGQLKEAYLIAKAQGMAGKYLNKLFQSGFAAAKAARSAT 156
                 ***********************************************987 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.16
     GlutR_N 113 eayelakeag..tlgkvLerlfqkaikvakrvrte 145
                 ea ++a +++   +  v +r f+ka++++++++ e
  CCG93115.1 195 EATAKALQKKggNIILVANRTFEKALSISQEIKAE 229
                 55555544441145556799**********99987 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         5   1.1e+04      63      83 ..      30      50 ..      18      55 .. 0.64
   2 !  130.9   0.0   1.5e-41   3.3e-38       1     138 []     171     306 ..     171     306 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5
                  EEEGCGHHHHHHT-SEEEE-S CS
  Shikimate_DH 63 alkleelkellaeadvvisat 83
                   ++l+ +ke+++  + v+ +t
    CCG93115.1 30 PQALSMMKEMMQLEEAVLLST 50
                  455666666666666666666 PP

  == domain 2  score: 130.9 bits;  conditional E-value: 1.5e-41
                   HHHHHHHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB-HHHHHC CS
  Shikimate_DH   1 elakkkleslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisataseepilekeevee 97 
                   +la+k +++l+++ ++++GaG ++e +ak+L +kg + ++vaNRt+e+a ++ +e+k+e   a++ +e  ++++++d++is+ta++++++++e++  
    CCG93115.1 171 DLAEKLFGRLSGCSIMIVGAGVVSEATAKALQKKGGNIILVANRTFEKALSISQEIKAE---AIPWSEFPNRISRVDILISSTAAPHYVITREKLAP 264
                   59******************************************************777...*********************************** PP

                   CHHH.S...EEEEE--SS-SB-TTGGGSTTCCCEEHHHHHHH CS
  Shikimate_DH  98 alkkrk.kplllvDiavPRdvepevaeledvrlytvDdLkev 138
                   ++  r  +pl+l+D+avPRd++p+v+el++v+ y++DdL+++
    CCG93115.1 265 LMGMRGgRPLFLIDLAVPRDIDPAVQELDGVYCYNIDDLQSI 306
                   ****999********************************986 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.6   8.1e+03      74      96 ..      29      52 ..      22      53 .. 0.55
   2 !   20.9   0.1   1.8e-07    0.0004       2      52 ..     185     232 ..     184     255 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.6
                   HHHHHHHC.GHHHHTTSEEEEESS CS
  F420_oxidored 74 veevlsel.akdalkgklvisvla 96
                   ++++ls +    +l++ +++s+++
     CCG93115.1 29 YPQALSMMkEMMQLEEAVLLSTCN 52
                   444444442225677777777776 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 1.8e-07
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEEC CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvta 52 
                    i i+GaG + ea a+ l+++g    +i+++++r+ eka ++ +e+++++++
     CCG93115.1 185 IMIVGAGVVSEATAKALQKKG---GNIILVANRTFEKALSISQEIKAEAIP 232
                    7899*****************...9999999*************9988776 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     4e-07    0.0009       2      70 ..     177     251 ..     176     258 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4e-07
  NAD_binding_7   2 fldlkgkkvlvvGgGevAarkvrklleagakvtvvapev...keele...elvkla...eeelekdlegadlviaatd 70 
                    f +l+g ++++vG+G v +  ++ l ++g ++++va+++   +       + +k++    +e+++ ++++d++i  t 
     CCG93115.1 177 FGRLSGCSIMIVGAGVVSEATAKALQKKGGNIILVANRTfekA---LsisQEIKAEaipWSEFPNRISRVDILISSTA 251
                    678999********************************53221...13333344332224678999999999998875 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   8.5e-06     0.019      31     114 ..     177     262 ..     147     267 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.5e-06
                   BS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH.....CHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHH CS
  2-Hacid_dh_C  31 gkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee.....eeeelgvelvsleellaesDivslhlpltpetrhlinaeel 114
                     +lsg  + i+G+G + +a+ak l++ g ++i +  +  +++     e +++ + + ++ + +++ D   + +  t++ + +i++e+l
    CCG93115.1 177 FGRLSGCSIMIVGAGVVSEATAKALQKKGGNIILVANRTFEKAlsisqEIKAEAIPWSEFPNRISRVD---ILISSTAAPHYVITREKL 262
                   44799*********************999999887766655555643344444444555555555555...555556666666666666 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.1e-05     0.024       2      57 ..     184     237 ..     183     325 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias 57 
                  +++++G+G+   a+a+ l+++g++++lv +++t+     ++s+++ + a + +++ 
   CCG93115.1 184 SIMIVGAGVVSEATAKALQKKGGNIILV-ANRTFEK-ALSISQEIKAEAIPWSEFP 237
                  69**************************.7777744.4777777777777766665 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.1e-05     0.047       1      44 [.     185     226 ..     185     283 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.1e-05
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka 44 
                      ++i+GaG v++a+a+ l++++     i va r+ ek+  + +++
       CCG93115.1 185 IMIVGAGVVSEATAKALQKKGGN--IILVANRTFEKALSISQEI 226
                      78*******************99..9**********98887655 PP

>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.6     8e+03      15      42 ..      32      58 ..      32      66 .. 0.67
   2 ?   12.3   0.0   5.9e-05      0.13      17      64 ..     196     242 ..     193     270 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.6
                     HHHHHHHHHCTT-EEEEEEETCCCHHHH CS
  Glyco_transf_28 15 alAlakeLkkegheVrylgtkrgleerl 42
                     al+++ke+++ +  V  l t +++e + 
       CCG93115.1 32 ALSMMKEMMQLEEAVL-LSTCNRVEFFA 58
                     5777788877777775.77776666555 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5.9e-05
                      HHHHHHHCTT-EEEEEEETCCCHHHHHHCCT-EEEE---GHCTT..CH CS
  Glyco_transf_28  17 AlakeLkkegheVrylgtkrgleerlveeaglefepiageklrrklsp 64 
                      A ak+L+k+g ++  l++ r +e+ l+ +++++ e i+ +++++++s 
       CCG93115.1 196 ATAKALQKKGGNII-LVANRTFEKALSISQEIKAEAIPWSEFPNRISR 242
                      89***********9.*************************99997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.20s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2609.36
//
Query:       CCG93116.1  [L=269]
Description: ABC-type transport system involved in cytochrome c biogenesis, permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-13   50.8  21.6    1.8e-13   50.8  21.6    1.8  2  Cytochrom_C_asm  Cytochrome C assembly protein


Domain annotation for each model (and alignments):
>> Cytochrom_C_asm  Cytochrome C assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.4      0.11   1.9e+03      82      91 ..      40      49 ..       9      61 .. 0.52
   2 !   50.8  21.6   9.9e-18   1.8e-13       3     210 ..      69     264 ..      67     267 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.11
  Cytochrom_C_asm 82 sYatliigal 91
                     s+ +l i+++
       CCG93116.1 40 SFILLFIAFF 49
                     2222222222 PP

  == domain 2  score: 50.8 bits;  conditional E-value: 9.9e-18
  Cytochrom_C_asm   3 nleesllllawilsllgllleylarklnlsllaavaliaalillgfalflllaelqesadlnpalqspilmiHvplallsYatliigallsial 96 
                      n  e l++l+w+l+l+++++ + +r    s+l+ +++++a ++ ++ l        +  +l p    ++l +H   ++l+Ya+++i+al+++++
       CCG93116.1  69 NFLETLAFLSWALLLIYFIIGSTYRI---SILGFFTAPTAFLINLIGLS----GRPDTPKLMP-KLGWMLEVHAAFSILAYAIFGIAALAAVIY 154
                      78899***************665555...99999999999999988887....3344444444.457999************************ PP

  Cytochrom_C_asm  97 liierqlkkkkklklsanlkllkqldrlsyriiliGfvlltigiilGsvWa.eeaWGsywsWDpketaslitWlvfaallhsriekgwrgkkaa 189
                      l+ +++lk++k ++l   ++++  l  + +ri l+G vllt+g+i G +   +  W   w+   k  +s+  Wl++++l  + +  +   k+ +
       CCG93116.1 155 LMEDKELKTHKLSSLFFWFPPIGDLFYIQKRILLMGLVLLTAGLIGGILISpKSSWD--WV---KISWSIGIWLFYLYLVFCSFLFHPGMKRLS 243
                      ***********************************************9988777774..66...889*********9998888777899999** PP

  Cytochrom_C_asm 190 ilailgflllllayfgvrllg 210
                      il+i gfl++ l + g+++ +
       CCG93116.1 244 ILSIGGFLFIFLTFWGINYFS 264
                      *****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 1729.73
//
Query:       CCG93117.1  [L=148]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-45  153.3  16.6    4.8e-45  153.2  16.6    1.0  1  YqeY             Yqey-like protein
     0.0046   16.8  15.2      0.041   13.8  14.3    2.5  1  GatB_Yqey        GatB domain
  ------ inclusion threshold ------
       0.61   10.9   4.9        1.5    9.6   0.3    2.3  2  DUF3349          Protein of unknown function (DUF3349)
        1.1    8.5   4.5        1.4    8.3   4.5    1.2  1  DNA_primase_lrg  Eukaryotic and archaeal DNA primase, large s
        1.8    8.0   5.9       0.71    9.3   0.6    2.6  3  Proteasome       Proteasome subunit
        5.1    7.9   7.5         13    6.5   1.6    2.6  2  ATC_hydrolase    L-2-amino-thiazoline-4-carboxylic acid hydro


Domain annotation for each model (and alignments):
>> YqeY  Yqey-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2  16.6   1.6e-48   4.8e-45       3     143 .]       6     147 ..       4     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: 153.2 bits;  conditional E-value: 1.6e-48
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTTS.S--HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS-----HHHHHHHH CS
        YqeY   3 klkedlkeamkakdkerlstlrllkaaikqeevderk.elsdeevlkvlakevkqRresieefekagRedlaekekaEievleeYlPeqlseeeiealv 100
                 +++++lkeamk+k+ e++stlrllk+ai+ + +++++ el+d+e++ v++ke+k+R+esi e++ka+R++laekek Ei++l+e+lPe +seee+ealv
  CCG93117.1   6 QIDQQLKEAMKKKELEKISTLRLLKSAINYAAIQKSQkELTDQEIIGVISKEIKKREESILEYTKANRTELAEKEKLEIAILKEFLPEAMSEEEMEALV 104
                 799******************************998879************************************************************ PP

                 HHHHHHTT--BGGGHHHHHHHHHHHHTTTS-HHHHHHHHHHH- CS
        YqeY 101 keaiaevgaesmkdmGkvmkalkpkvkGkaDgkkvsalvkekL 143
                 k++i+e++a++ k+mG vmk++ +++ G+aDgkk+++lvk+ L
  CCG93117.1 105 KKVIEETQAKDRKEMGVVMKTVIARAGGRADGKKLQELVKKYL 147
                 ****************************************987 PP

>> GatB_Yqey  GatB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8  14.3   1.4e-05     0.041      21     148 .]      26     147 ..      11     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
                 HTCHHHHHHHHTXXTTCSSTTHHHHHHHH.HHHHTTSSGHHHHHHHHHHHHHHTXXHHHHHHHCTXXXXXXSSXHHHHHHHHHHTXHHHHHHHTTXXTT CS
   GatB_Yqey  21 lnellgelnkegleieelkltpeqlaell.kliaegkIskkiakevleelleegkspeeiieekgLkqisdeeeleklveeviaenpkavedyksgkek 118
                 l  l + +n+  ++ ++ +lt++++  ++ k i++ + s     +  ++ l+e+++ e +i ++ L  + +eee+e+lv++vi+e      + k++ke 
  CCG93117.1  26 LRLLKSAINYAAIQKSQKELTDQEIIGVIsKEIKKREESILEYTKANRTELAEKEKLEIAILKEFLPEAMSEEEMEALVKKVIEET-----QAKDRKE- 118
                 555677889999999998999988887763569888888888888888888888888888888889888889*************9.....6677776. PP

                 STHHHHHHHHHTTSSXSXHHHHHHHHHHHS CS
   GatB_Yqey 119 alkflvGqvMkktkGkadpklvnellkekL 148
                  +++ +  v  +  G+ad+k+++el+k+ L
  CCG93117.1 119 -MGVVMKTVIARAGGRADGKKLQELVKKYL 147
                 .999***********************987 PP

>> DUF3349  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.6     0.049   1.5e+02      32      48 ..      43      59 ..       6      85 .. 0.54
   2 ?    9.6   0.3   0.00051       1.5      29      84 ..      90     141 ..      80     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.049
                TT--HHHHHHHHHHHHH CS
     DUF3349 32 rrLsdeevkevaeelva 48
                ++L+d+e+  v+++ ++
  CCG93117.1 43 KELTDQEIIGVISKEIK 59
                23344443333333332 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00051
                 HHCTT--HHHHHHHHHHHHHH--.SSS.BSHHHCHHHHHHHCTS---HHHHHHHHH CS
     DUF3349  29 lLrrrLsdeevkevaeelvaeaaeadeavdeedieelitkvteeepseedvarVaa 84 
                  L + +s+ee++++++++++e+    +a d++++++++++v+ +    +d +++++
  CCG93117.1  90 FLPEAMSEEEMEALVKKVIEET----QAKDRKEMGVVMKTVIARAGGRADGKKLQE 141
                 577889**************99....567889999999999988888877777665 PP

>> DNA_primase_lrg  Eukaryotic and archaeal DNA primase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.5   0.00046       1.4      18      87 ..      35     108 ..       9     128 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00046
                      GS-EETTEEEE-HHHHHHHHHHHHHHHHHH..........HHGGGSSS---HHHHHHHCT--................ CS
  DNA_primase_lrg  18 rvllkkGyaylpkeeleslllekfrkrlekalestkeslpeleeeikederekleellealsesyvaed........v 87 
                         ++k +  l+++e++ +++++++kr e  le tk++++el e++k   +  +  l+e l e+ ++e+        +
       CCG93117.1  35 YAAIQKSQKELTDQEIIGVISKEIKKREESILEYTKANRTELAEKEK--LE--IAILKEFLPEAMSEEEmealvkkvI 108
                      566777788899******************************44433..33..4444444444444444444443331 PP

>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2       0.2     6e+02     152     174 ..       9      32 ..       5      54 .. 0.56
   2 ?    9.3   0.6   0.00024      0.71     148     186 ..      85     122 ..      78     127 .. 0.82
   3 ?    0.6   0.0      0.11   3.4e+02      44      66 ..     123     145 ..     113     147 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.2
                 HHHSTTBSHHHHHHH.HHHHHHHH CS
  Proteasome 152 keykedltleeavel.avkalkea 174
                 +++ke ++++e++++  ++ lk+a
  CCG93117.1   9 QQLKEAMKKKELEKIsTLRLLKSA 32 
                 455555555555554122333333 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00024
                 HHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEE CS
  Proteasome 148 talekeykedltleeavelavkalkealerdklsgknie 186
                 ++l++ + e +++ee++ l++k+++e+  +d  ++ ++ 
  CCG93117.1  85 AILKEFLPEAMSEEEMEALVKKVIEETQAKD-RKEMGVV 122
                 7899999*******************99877.5555554 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.11
                 TTEEEEEEESHHHHHHHHHHHHH CS
  Proteasome  44 dhigvafaGlaaDartlvrrara 66 
                  ++++a aG  aD++ l + +++
  CCG93117.1 123 MKTVIARAGGRADGKKLQELVKK 145
                 67899*********999988776 PP

>> ATC_hydrolase  L-2-amino-thiazoline-4-carboxylic acid hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.7     0.027        80       3      44 ..      28      65 ..      12      85 .. 0.73
   2 ?    6.5   1.6    0.0045        13      19      45 ..      94     120 ..      78     146 .. 0.56

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.027
  ATC_hydrolase  3 lleaailvalyealkkeigkeeakeiirkalerlgkergkkl 44
                   ll++ai +a++++ +ke++++e+  +i k +    k+r +++
     CCG93117.1 28 LLKSAINYAAIQKSQKELTDQEIIGVISKEI----KKREESI 65
                   5778888999999999999999999999888....3333333 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0045
  ATC_hydrolase  19 eigkeeakeiirkalerlgkergkkla 45 
                    ++++ee++++++k++e+  +++ k++ 
     CCG93117.1  94 AMSEEEMEALVKKVIEETQAKDRKEMG 120
                    346666666666666555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2155  (0.120196); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 958.60
//
Query:       CCG93118.1  [L=47]
Description: hypothetical protein MFUM_930028 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 340.65
//
Query:       CCG93119.1  [L=372]
Description: Predicted permease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-59  199.6  14.9    7.3e-59  199.4  14.9    1.0  1  LptF_LptG  Lipopolysaccharide export system permease LptF/Lpt


Domain annotation for each model (and alignments):
>> LptF_LptG  Lipopolysaccharide export system permease LptF/LptG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.4  14.9   4.1e-63   7.3e-59       4     354 .]       9     368 ..       6     368 .. 0.90

  Alignments for each domain:
  == domain 1  score: 199.4 bits;  conditional E-value: 4.1e-63
   LptF_LptG   4 lreflkpfllvllvllfllllqdllryldll.vgkglpvgdllelilynlpyilelalPlavLlavlltfgrLaedsEltalrsaGislgrllrpilil 101
                 + e++k  l+++ +l+f l++ + +r l++l v++ +p++  l+l+l  +p++l  +lP  +L+av+l fg++++d+El+al+saGis+g ++ pi+++
  CCG93119.1   9 FLELFKNSLITTTILTFFLVIANAFRDLSDLlVNNDVPLWISLKLLLSLIPFVLTFTLPWGLLIAVILLFGKMSQDRELVALKSAGISIGAIMAPIIWF 107
                 66889999999999998888877777666666******************************************************************* PP

   LptF_LptG 102 alllsvlsfllnnyvvPwankkaesllseirqkspsllikpgvfikdgdgyiiyvgsmddeggelqdvtiydltegkgltsiitAksgvlvksad..el 198
                 all s++sf++n y+ P++ + +++++s++   +p + +k+   i + dg+ +y++++     +lqdv+i +++++ +  + i A +++++ + +    
  CCG93119.1 108 ALLYSIFSFAINAYIGPKSRHAFKEIFSDVMLHNPLSFFKSSKTIDQFDGFRLYANNRIGA--RLQDVYIWETDAELRPLRSIRASEADIEPDLAhqRI 204
                 ********************************************************99999..7************99999**********99889989 PP

   LptF_LptG 199 qlrLfngeiyevgddek...kysretferyridinldpadlsteeespdelslsel......kekikalrsegle..vrryraelhkrlalplaclvfa 286
                  l+L n ++ e +  ++   k  + + + +++ ++ + a l ++ ++ +++ ls l       ++++ ++        + +++e++krla++l+c+ f+
  CCG93119.1 205 LLTLWNARQEERNIADPqnvKLVMPGSRATQLPYEISLATLFDRLAVRKSIGLSTLdeigrqIVAADLFGF---TsnPTPVLTEFQKRLAFSLSCFTFV 300
                 99999999988887777788677777777777777666677777777799999999666444444444444...255699******************* PP

   LptF_LptG 287 liaaplglvkrrggrglrlliaillfvlyyvllslgkalaengvlppilaawlpnilflllglflllr 354
                 l++apl++  +r    ++++++++++++yyv+  l+ al  ++++ p l +wlpni+f  lg++l++r
  CCG93119.1 301 LVGAPLAIQVQRKETSIGVALSLFIVLSYYVIVLLADALKAKTNFFPELIIWLPNIIFQTLGFWLIWR 368
                 *****************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2873.47
//
Query:       CCG93120.1  [L=367]
Description: Xaa-Pro aminopeptidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-34  118.4   0.0    4.9e-34  117.9   0.0    1.2  1  Peptidase_M24  Metallopeptidase family M24
  ------ inclusion threshold ------
       0.12   12.5   1.5        1.1    9.4   1.4    2.5  2  Mago_nashi     Mago nashi protein


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.0   5.5e-38   4.9e-34       7     208 ..     136     350 ..     130     351 .. 0.84

  Alignments for each domain:
  == domain 1  score: 117.9 bits;  conditional E-value: 5.5e-38
                    HHHHHHHHHHHHHHHHT......T........CBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEET.. CS
  Peptidase_M24   7 ariasaaleavleaikp......g........vterelaaeieattlkrhgarglafppivasgenaavlhytpndrvlkegdlvlidagaeyd.. 86 
                     r+a++ +++++e +k+      g          ++ l +eie + + r+ga  la ++iva+g++a+ +h +  + +l + + ++id+ ++ +  
     CCG93120.1 136 LRVAEKGMKKAIEILKEseiskdGslrwqkkvLDSKTLRDEIEIA-MMREGA--LASNTIVACGKEACDPHEIG-KGKLMAHQSIVIDIFPRDKtt 227
                    577888888888877763333331333333335799999999966.455555..56689*************99.7999999*********98899 PP

                    TEEEEEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTB........CCGBSSCSEEEESSSSSEEEEEESSSTTC CS
  Peptidase_M24  87 gyasDitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesagl........akffphglGHgvGlevhdegpsvsresnd 174
                    gy +D +rTv+ G+++++ rely +v+ea + +++ +++G+++++i + +r+ + ++g+           f hglGHgvGle+h+  p+      +
     CCG93120.1 228 GYFGDLSRTVVKGTPSQALRELYLTVQEAKQWVLSVLREGADGKKIEKEIRQRFDKKGYpteirsgrWVGFFHGLGHGVGLEIHEP-PRF-----R 317
                    *************99999**************************************9888888998855668************76.753.....5 PP

                    SSB--TTBEEEEEEEEEEETTTEEEEEBEEEEEE CS
  Peptidase_M24 175 grkleeGmvftiEpgiyfapgeggvriedtvlvt 208
                    + + + ++v+t+Epg+y  p+ ggvr+ed+v+++
     CCG93120.1 318 KAVFKTNQVITVEPGLY-YPEIGGVRLEDMVVIK 350
                    79***************.99************97 PP

>> Mago_nashi  Mago nashi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.11   9.8e+02      64      88 ..     109     133 ..      99     139 .. 0.83
   2 ?    9.4   1.4   0.00012       1.1      41      93 ..     131     186 ..     122     268 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.11
  Mago_nashi  64 eilkeddakwpkkdkvgkqeleikl 88 
                 +i+ ++ + +p+++++++qe+e  +
  CCG93120.1 109 KIIPKQGEFFPERSVKTQQEIEAII 133
                 577889999************9765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00012
  Mago_nashi  41 lirkevlvskavlkelkriieeseilkeddakwpkkd...kvgkqeleiklgkehi 93 
                  i + + v+++ +k+  +i++esei k+   +w kk    k+ ++e+ei + +e  
  CCG93120.1 131 AIIRILRVAEKGMKKAIEILKESEISKDGSLRWQKKVldsKTLRDEIEIAMMREGA 186
                 4666788999999*********************98622256689****9987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2869.35
//
Query:       CCG93121.1  [L=552]
Description: Outer membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-42  143.8  18.9    4.4e-22   78.8   4.5    2.2  2  OEP       Outer membrane efflux protein


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   6.5   6.4e-24   1.1e-19       1     188 []     107     322 ..     107     322 .. 0.86
   2 !   78.8   4.5   2.4e-26   4.4e-22       5     188 .]     347     529 ..     343     529 .. 0.92

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 6.4e-24
         OEP   1 ldellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygye..gngsegggddggtgtt.............svgltl............. 71 
                 ld+l a+ l  n++lk   a++  a+  + ++ ++f+P +++   y++   + +  +++ ++++ ++             ++ ++l             
  CCG93121.1 107 LDQLEAQLLVGNQQLKGIYAQVVEARSLVTQSLSNFFPHIGFYPFYSRLrfSQNQPFFFLQHPVVSPvfnpagtqqigftQFQVGLpiywnewalplaa 205
                 79*************************************9997555555005555555555555555********999884444443344444333333 PP

         OEP  72 sqplfdggkrrarvkaakaqleaaeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraela 170
                 s++   +g++r++++aaka+ +a++a +e  +++l +e+a+ y+++++  +ql++++ +++ ++++l l++ ry+ Gl+++ld+++a+ +l++++++++
  CCG93121.1 206 SYEADVWGRYRRELEAAKASAQATQAAYESLLLTLHAELATDYFSIRYIDAQLAVYRYMIDVFRDNLYLVQSRYDGGLANELDLARAKTDLANLQSQYI 304
                 6666666******************************************************************************************** PP

         OEP 171 eaeqqlqlaraqLeyllg 188
                   e+ +++ +++++ llg
  CCG93121.1 305 GLENTRAQIENAIAVLLG 322
                 ***************998 PP

  == domain 2  score: 78.8 bits;  conditional E-value: 2.4e-26
         OEP   5 lalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgtt..svgltlsqplfdggkrrarvkaakaqleaaeaqleq 101
                  +  l+++pd+++ae + +aa+a++ +a ++f+P+++l +s g  +++ e  ++++    +  ++g  +s+p+f gg+  a++++aka ++aa a+++q
  CCG93121.1 347 PSDLLQRRPDVAQAERQMAAANADIGVALGAFFPSVNLLASVGLLSSTVEMLFNGSS---RfwTLGPFVSLPIFEGGQLVAGLQQAKAAYQAAVANYRQ 442
                 566799**************************************9999875444332...2347*********************************** PP

         OEP 102 arqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                  ++   ++v++a++ l+ +++q e+++++++ a+++++    r+k Gl+++++v+++++  l+a++  ++   ++ +a+ +L ++lg
  CCG93121.1 443 GVLVAFQDVENALAALKILEAQQEAQQRTVAFAKDQFDVSLVRFKEGLVNYIEVDTTEQVWLNAQLLNLQILGERFIATVALIRALG 529
                 *****************************************************************9988888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4091.61
//
Query:       CCG93122.1  [L=1834]
Description: Excinuclease ABC subunit A, ATPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-31  110.0   6.1      7e-06   26.6   0.1    8.6  7  ABC_tran         ABC transporter
    2.5e-24   85.5   0.0    1.2e-16   60.7   0.0    3.4  2  UvrA_inter       UvrA interaction domain
    1.6e-19   70.8  12.2     0.0091   15.7   0.2    8.2  8  AAA_15           AAA ATPase domain
    6.1e-18   65.7  11.9    0.00077   19.4   0.0    7.9  8  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    2.1e-16   60.1   0.0    0.00021   20.8   0.0    7.6  7  SMC_N            RecF/RecN/SMC N terminal domain
    1.3e-14   53.7   2.7     0.0059   16.3   0.0    4.8  4  AAA_29           P-loop containing region of AAA domain
    5.4e-14   52.9   2.2      0.048   14.0   0.0    5.5  5  AAA_16           AAA ATPase domain
    6.4e-13   48.9   0.2      0.076   12.9   0.0    4.7  4  RsgA_GTPase      RsgA GTPase
    4.4e-12   46.9   2.0      0.016   15.7   0.0    4.7  4  AAA_23           AAA domain
      5e-10   39.7   0.0      2e-09   37.8   0.0    2.1  1  UvrA_DNA-bind    UvrA DNA-binding domain
      3e-09   37.3   4.9       0.62   10.3   0.2    5.7  5  AAA_22           AAA domain
    1.7e-08   35.1   1.1        2.9    8.5   0.0    4.9  4  AAA_18           AAA domain
    3.9e-08   33.1   0.4          1    8.9   0.0    4.6  4  AAA_25           AAA domain
    5.8e-08   33.0  17.2      0.079   13.3   0.5    5.7  5  DnaJ_CXXCXGXG    DnaJ central domain
    1.6e-07   31.6   2.0       0.11   12.6   0.2    4.8  4  AAA_33           AAA domain
    3.2e-07   30.4   2.4       0.91    9.4   0.0    5.0  4  NACHT            NACHT domain
      7e-07   29.2   0.1      0.081   12.7   0.0    4.4  4  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    1.3e-06   28.4   1.5       0.65   10.0   0.0    5.5  5  AAA_14           AAA domain
    2.3e-05   23.9   0.8        5.5    6.3   0.0    4.4  4  ATPase           KaiC
    3.6e-05   23.6  15.4      0.098   12.6   2.2    5.6  5  Anti-TRAP        Tryptophan RNA-binding attenuator protein in
    5.5e-05   23.1   3.9        1.9    8.4   0.0    4.4  4  APS_kinase       Adenylylsulphate kinase
    6.2e-05   23.3   0.3          2    8.8   0.0    4.5  4  RNA_helicase     RNA helicase
    0.00015   21.0   0.4       0.55    9.4   0.0    4.0  4  NB-ARC           NB-ARC domain
    0.00016   21.7   2.8        1.1    9.2   0.0    5.4  6  ATPase_2         ATPase domain predominantly from Archaea
    0.00021   21.5   0.1       0.17   12.1   0.0    4.2  3  SbcCD_C          Putative exonuclease SbcCD, C subunit
    0.00041   20.0   5.4        5.4    6.6   0.1    4.3  4  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0011   18.9   1.2        8.1    6.3   0.0    4.8  5  Rad17            Rad17 P-loop domain
     0.0012   19.2   2.0         50    4.1   0.0    4.5  4  AAA_28           AAA domain
      0.005   16.6   6.1         15    5.3   0.0    5.4  5  AAA_24           AAA domain
     0.0091   15.5   0.1         69    2.9   0.0    4.2  4  AAA_7            P-loop containing dynein motor region
     0.0095   15.2   1.1         15    4.7   0.0    4.0  4  DUF2075          Uncharacterized conserved protein (DUF2075)
       0.01   15.9   1.7         26    5.0   0.0    4.3  4  MMR_HSR1         50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.025   13.7   0.5         12    4.9   0.0    3.6  4  DAP3             Mitochondrial ribosomal death-associated pro
      0.031   14.0   4.2         17    5.1   0.1    4.8  4  AAA_30           AAA domain
      0.048   12.6   1.1         14    4.5   0.0    3.7  4  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.064   13.2   0.1         26    4.8   0.0    3.9  4  AAA_5            AAA domain (dynein-related subfamily)
      0.066   12.3   0.5         28    3.6   0.0    3.5  3  T2SSE            Type II/IV secretion system protein
       0.11   12.4   0.1        3.2    7.7   0.1    3.1  3  RACo_linker      RACo linker region
       0.19   10.5   0.5         19    3.9   0.1    2.6  2  Adeno_IVa2       Adenovirus IVa2 protein
       0.19   11.5   2.9       0.24   11.2   0.4    2.4  1  zf-CSL           CSL zinc finger
       0.23   10.7   0.3    1.2e+02    1.8   0.0    3.8  4  Zeta_toxin       Zeta toxin
       0.42    9.9   2.4        5.6    6.2   0.0    3.4  4  FtsK_SpoIIIE     FtsK/SpoIIIE family
       0.44   10.6   4.3         42    4.2   0.1    5.0  5  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
        0.5   10.2   3.1        5.9    6.8   0.1    3.6  2  Cys_rich_KTR     Cysteine-rich KTR
       0.51    9.5   1.9         11    5.0   0.0    3.4  4  DUF815           Protein of unknown function (DUF815)
          1    9.0   7.4        6.7    6.4   0.1    3.9  4  PRK              Phosphoribulokinase / Uridine kinase family
        1.1    8.9   6.8         16    5.1   0.1    4.4  4  TackOD1          Thaumarchaeal output domain 1
        2.4    7.9   6.9         85    2.8   0.0    4.9  5  IstB_IS21        IstB-like ATP binding protein
        3.3    7.6   9.5         15    5.5   0.0    4.4  4  NTPase_1         NTPase
        3.9    7.4   6.5         49    3.8   0.1    4.1  4  MobB             Molybdopterin guanine dinucleotide synthesis


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00037      0.13       1      28 [.      17      44 ..      17      50 .. 0.94
   2 !   12.4   0.0   0.00046      0.16      93     136 ..     469     514 ..     402     515 .. 0.82
   3 !   26.6   0.1     2e-08     7e-06       1     136 [.     620     878 ..     620     879 .. 0.85
   4 !   15.7   0.1   4.5e-05     0.016       1      28 [.     989    1016 ..     989    1026 .. 0.92
   5 !   10.4   0.0    0.0019      0.69     100     136 ..    1351    1389 ..    1294    1390 .. 0.83
   6 !   17.8   0.1     1e-05    0.0037       3      29 ..    1500    1526 ..    1498    1540 .. 0.93
   7 ?    6.8   0.0     0.025       9.1     101     124 ..    1698    1721 ..    1644    1728 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00037
                EEEEEEEEETTSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  1 lknvslklkegekvaivGenGaGKStLl 28
                lk ++l++ +  +++i+G +G+GKS+L+
  CCG93122.1 17 LKAIDLDIPHKALTVITGLSGSGKSSLA 44
                6899**********************95 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00046
                 TTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT..SSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
    ABC_tran  93 glkelkdtvvksspssLSgGqkqrvalarallkk..pkllllDEpt 136
                 ++++l   ++++  ++LSgG+ +r  l  +l +k   +l++lDEpt
  CCG93122.1 469 NDIGLGYLTLDRTSRTLSGGETRRANLTICLGNKltNTLFVLDEPT 514
                 444455556677789****************9984468*******9 PP

  == domain 3  score: 26.6 bits;  conditional E-value: 2e-08
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE........................EETTCEGGGB-HHHCCHCEEEE-SS--S-TTSB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGei........................lldgkdlkeqeleslrkeigvlpqepqlfpelt 75 
                 l+++++++  g  v i+G +G+GKS+L++ ++  +     ei                        ++d+ ++ +++++ +   +g+ p  ++lf  ++
  CCG93122.1 620 LQELDVDIPLGLFVTITGVSGCGKSSLVQEIISYSLHRIQEInpppgpfltdralikgwenieeviEIDQSPIFKTPRSNMALYLGIWPYVKELFASTE 718
                 678999***********************9999999999999999999999999999999999999999999999999999999999999999999987 PP

                 HHHH.....................................................................................HHHTC..... CS
                 xxxx.....................................................................................xxxxx..... RF
    ABC_tran  76 vren.....................................................................................esdee..... 84 
                 +++                                                                                          +     
  CCG93122.1 719 AAQIqgleeshfsinsgegrcprclglgyekiemqflsdvfipcsvcegkrfqpyilaihyhgksldqilrmtakealmffdpqaadssR---Qailhk 814
                 6666899999************************************************************99999999999999985440...355555 PP

                 .HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHH...........TSSEEEEESTT CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxx RF
    ABC_tran  85 .iekalsklglkelkdtvvksspssLSgGqkqrvalarallk...........kpkllllDEpt 136
                  i+ +l+ l+ ++l+   +++  ++LSgG+ qr+++  +l +           k++l++lDEpt
  CCG93122.1 815 kISSLLALLEEVGLDYLQLGHPLNQLSGGESQRLKILGILSErllnkktrshtKQRLIILDEPT 878
                 58888888888888888888888*************9777532222222222267899999998 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 4.5e-05
                  EEEEEEEEETTSEEEEEESTTSSHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLl 28  
                  lk +sl+++  ++++++G +G+GKStL+
  CCG93122.1  989 LKSISLEIELAKTTVLTGISGSGKSTLA 1016
                  789***********************95 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.0019
                  BGESTTSGGS-HHHHHHHHHHHHHHHTSS..EEEEESTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
    ABC_tran  100 tvvksspssLSgGqkqrvalarallkkpk..llllDEpt 136 
                    +++s +sLS G+ qr+ l+  l ++ k  l++lDEpt
  CCG93122.1 1351 LSLERSSQSLSAGELQRIYLCSQLGSNLKgiLYILDEPT 1389
                  45667789****************998776699*****9 PP

  == domain 6  score: 17.8 bits;  conditional E-value: 1e-05
                  EEEEEEETTSEEEEEESTTSSHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran    3 nvslklkegekvaivGenGaGKStLlk 29  
                  ++++++  g++v+i G +G+GKStLl+
  CCG93122.1 1500 DLTVEIPLGRLVVICGVSGSGKSTLLR 1526
                  7899*********************97 PP

  == domain 7  score: 6.8 bits;  conditional E-value: 0.025
                  GESTTSGGS-HHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  101 vvksspssLSgGqkqrvalarall 124 
                   +++ + +LSgG+ qr++la+ l+
  CCG93122.1 1698 CLGQPTPTLSGGEAQRIKLAKELI 1721
                  45556689************9886 PP

>> UvrA_inter  UvrA interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   9.9e-07   0.00035       4     105 ..     136     238 ..     133     241 .. 0.82
   2 !   60.7   0.0   3.3e-19   1.2e-16       1     105 [.    1105    1209 ..    1105    1213 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 9.9e-07
  UvrA_inter   4 eqIvdqilkleegtkllilaPvvrerkgefkkllenlkkkGfvrvriDgeiydldedieldknkkhsievvvDrlv.vkkeersrlaesvetAlklgeg 101
                 ++ ++ +++   +++++i+ Pv  + +  fk++ + l ++G++++ ++++i+++de+i      + +   vv  l+  + ++++ l e  ++++k g+g
  CCG93122.1 136 KTLTEFLYSAYPQKDFFICFPVRFSAHTPFKEACQLLLSQGYSKIWFENKIIRIDEEILERTGFNCQELFVVHSLQrTEPNKKTELLEIFDESFKSGKG 234
                 556666777788999*****************************************8755555444445566666625566779*************** PP

  UvrA_inter 102 lviv 105
                 ++++
  CCG93122.1 235 RLMI 238
                 *998 PP

  == domain 2  score: 60.7 bits;  conditional E-value: 3.3e-19
  UvrA_inter    1 QsveqIvdqilk.leegtkllilaPvvrerkgefkkllenlkkkGfvrvriDgeiydldedieldknkkhsievvvDrlvvkkeersrlaesvetAl 96  
                  Qs e+I++ + + l ++++  ilaP+++erkg + +l ++++kkG++  riDg+ yd+++ ++l + k+h+i++ ++ +  ++ + + l++ v  Al
  CCG93122.1 1105 QSQEDILQAVRSrLSSKEEYRILAPLIKERKGIYVALGKWAQKKGYTGFRIDGQWYDCQQFPSLSRFKSHTIDLWIENVNETT-SFEELKKNVALAL 1200
                  999*******96478899***********************************************************987654.4589********* PP

  UvrA_inter   97 klgeglviv 105 
                  +lg++++i 
  CCG93122.1 1201 SLGKETLIL 1209
                  ****99986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.069        25       3      40 ..       9      44 ..       8     160 .. 0.81
   2 !   12.4   0.0   0.00026     0.092     323     362 ..     504     542 ..     492     549 .. 0.84
   3 ?    4.6   0.0     0.061        22       3      43 ..     612     650 ..     611     698 .. 0.86
   4 !   15.7   0.2   2.5e-05    0.0091     293     364 ..     836     908 ..     786     913 .. 0.79
   5 !    8.9   0.0     0.003       1.1      10      55 ..     988    1038 ..     983    1124 .. 0.82
   6 ?    5.4   0.0     0.034        12     316     361 ..    1373    1417 ..    1346    1420 .. 0.83
   7 ?    6.8   0.2     0.014       4.8      17      40 ..    1503    1525 ..    1489    1529 .. 0.89
   8 !   11.6   0.2   0.00045      0.16     311     365 ..    1720    1782 ..    1703    1786 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.069
      AAA_15  3 IkkikikNFRslkdveidlseeltvliGkNnsGKSsil 40
                ++ki+  N ++++  +i+ +  ltv+ G  +sGKSs++
  CCG93122.1  9 LRKIRTHNLKAID-LDIPHKA-LTVITGLSGSGKSSLA 44
                5677778888887.5777666.**************84 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00026
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviit 362
                 +n +++++EP + LHp+ ++ li+l+++l ++++t v++ 
  CCG93122.1 504 TNTLFVLDEPTIGLHPKDCSRLIQLIQKLRDQGNT-VVVV 542
                 68899**************************9994.4444 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.061
      AAA_15   3 IkkikikNFRslkdveidlseeltvliGkNnsGKSsileal 43 
                 I+k +i N   l+ v+i+l   + ++ G  ++GKSs+++ +
  CCG93122.1 612 IRKATIHNLQELD-VDIPLGL-FVTITGVSGCGKSSLVQEI 650
                 8999999*99999.8******.***************9865 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 2.5e-05
      AAA_15 293 plnknGsGvqrl...lllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 pln+ + G ++    l ++ ++l ++k +++++k+ +++++EP + LH++  k li ll++l++  +  +i+  H
  CCG93122.1 836 PLNQLSGGESQRlkiLGILSERLLNKK-TRSHTKQRLIILDEPTTGLHIDDVKRLISLLQKLVDAAN-TLIVVEH 908
                 677777776665110444455555555.59*********************************9998.5665555 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.003
      AAA_15   10 NFRslkdveidlseeltvliGkNnsGKSsilealdlFlnnkekkn.........k 55  
                  N +s++  ei+l + +tvl G  +sGKS++  a+d+++ ++++ +         +
  CCG93122.1  988 NLKSIS-LEIELAK-TTVLTGISGSGKSTL--AFDVLFAESRRRFldslsgyarQ 1038
                  888998.7******.**************8..79999998877666777665553 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.034
      AAA_15  316 kkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQvii 361 
                  +  +++ k ++++++EP + LHp   + l ++l  l  +++t vi+
  CCG93122.1 1373 QL-GSNLKGILYILDEPTIGLHPTENQKLLNSLEALKTKGNTLVIV 1417
                  44.5666789*******************99999998888766665 PP

  == domain 7  score: 6.8 bits;  conditional E-value: 0.014
      AAA_15   17 veidlseeltvliGkNnsGKSsil 40  
                  vei+l   l v++G  +sGKS++l
  CCG93122.1 1503 VEIPLGR-LVVICGVSGSGKSTLL 1525
                  89*****.**************98 PP

  == domain 8  score: 11.6 bits;  conditional E-value: 0.00045
      AAA_15  311 ileaekk........dekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365 
                  ++ +e+k          ++e+ +++l+EEP + LH    + + +l+++l++ ++t vii+ H 
  CCG93122.1 1720 LIAMEQKriqkmfewGAQKEPKILYLLEEPTIGLHLADIEKFLHLCQSLVEYGHTVVIIEHHP 1782
                  44444444444566888999*********************************9999988775 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.14        51       1      15 [.      29      43 ..      29      77 .. 0.90
   2 !   19.4   0.0   2.1e-06   0.00077     232     294 ..     480     541 ..     437     570 .. 0.87
   3 ?   -0.5   0.0       2.4   8.6e+02       2      17 ..     633     648 ..     632     674 .. 0.87
   4 !   13.9   1.0    0.0001     0.036     233     298 ..     836     909 ..     814     916 .. 0.83
   5 ?    3.0   0.0       0.2        73       2      15 ..    1002    1015 ..    1001    1099 .. 0.87
   6 !   15.2   0.0     4e-05     0.015     231     298 ..    1354    1420 ..    1313    1425 .. 0.87
   7 ?    5.9   0.1     0.028       9.9       1      17 [.    1510    1526 ..    1510    1544 .. 0.89
   8 ?    3.2   0.2      0.18        63     256     299 ..    1740    1782 ..    1712    1786 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.14
      AAA_21  1 lnvliGpNgsGKSnL 15
                l+v++G  gsGKS+L
  CCG93122.1 29 LTVITGLSGSGKSSL 43
                79***********98 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.1e-06
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvil 294
                 +++r lS G  r  a lt++l     ++l+++DEp  gLHPk  +rl++l+ +l++ g  v++
  CCG93122.1 480 RTSRTLSGGETRR-ANLTICLGNKLTNTLFVLDEPTIGLHPKDCSRLIQLIQKLRDQGNTVVV 541
                 5667788888888.7788888888889************************999997777776 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.4
      AAA_21   2 nvliGpNgsGKSnLLd 17 
                   ++G  g+GKS+L +
  CCG93122.1 633 VTITGVSGCGKSSLVQ 648
                 6799*********986 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 0.0001
      AAA_21 233 parelSdGtkrllalltallralkkg........sllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 p+++lS G  + l++l +l ++l           +l+++DEp +gLH   ++rl+ ll +l +    +i++ H+
  CCG93122.1 836 PLNQLSGGESQRLKILGILSERLLNKktrshtkqRLIILDEPTTGLHIDDVKRLISLLQKLVDAANTLIVVEHN 909
                 78999****9999**********9999*********************88888888875555444555555444 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.2
      AAA_21    2 nvliGpNgsGKSnL 15  
                  +vl+G  gsGKS+L
  CCG93122.1 1002 TVLTGISGSGKSTL 1015
                  8************9 PP

  == domain 6  score: 15.2 bits;  conditional E-value: 4e-05
      AAA_21  231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298 
                  e+++ +lS G ++ ++l + l + lk   l+++DEp  gLHP    +ll  l++l+++g  ++++ H+
  CCG93122.1 1354 ERSSQSLSAGELQRIYLCSQLGSNLKG-ILYILDEPTIGLHPTENQKLLNSLEALKTKGNTLVIVEHD 1420
                  667889999999999999999999987.**************99999999998888888888877665 PP

  == domain 7  score: 5.9 bits;  conditional E-value: 0.028
      AAA_21    1 lnvliGpNgsGKSnLLd 17  
                  l v+ G  gsGKS+LL+
  CCG93122.1 1510 LVVICGVSGSGKSTLLR 1526
                  579*************8 PP

  == domain 8  score: 3.2 bits;  conditional E-value: 0.18
      AAA_21  256 kkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299 
                  +k  l+l++Ep  gLH + ++++l l  +l + g  v++  H p
  CCG93122.1 1740 PK-ILYLLEEPTIGLHLADIEKFLHLCQSLVEYGHTVVIIEHHP 1782
                  44.89************988888877777777777777665555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   5.9e-07   0.00021       5     210 ..       7     557 ..       4     563 .. 0.88
   2 ?    4.9   0.0     0.044        16      24      44 ..     631     650 ..     611     659 .. 0.75
   3 ?    3.3   0.1      0.13        46     135     198 ..     831     909 ..     712     922 .. 0.75
   4 ?    5.0   0.0      0.04        14       9      46 ..     988    1021 ..     977    1046 .. 0.76
   5 ?    6.3   0.0     0.016       5.8     158     210 ..    1379    1432 ..    1111    1438 .. 0.81
   6 ?    3.5   0.0      0.11        40      18      41 ..    1503    1525 ..    1490    1545 .. 0.75
   7 ?   -2.0   0.0       5.6     2e+03     137     209 ..    1706    1792 ..    1598    1796 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.9e-07
                 EEEESETTEECEEEEEET.TSSEEEEEESTTSSHHHHHHHHHHHCTT.TT.TTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEE CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   5 leienFksyagktvilpf.sksftaivGpNGSGKsnlldAilFvLGersa.kklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisr 101
                 +++++ ++ + k+++l++ +k +t+i+G  GSGKs+l    lF  G++ + +++     + l+ ++k ka++ ++ +  +  ++dk++  +++ vs+++
  CCG93122.1   7 IRLRKIRTHNLKAIDLDIpHKALTVITGLSGSGKSSLAFDTLFAEGQSRYiETFPPYIRQFLLRAEKPKAEAIEGILPAIAIEQDKTSANTRSTVSTMT 105
                 56666666666666666536779*************976566999987542567777778888888888888888888887777777555555555555 PP

                 EEETTSEEEEEE...........TTEEE-HHHHHHHHHCTT-STT...................................................... CS
                 xxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxx...................................................... RF
       SMC_N 102 rvkrkgeseyki...........ngkevtkkevsellesagiske...................................................... 135
                  +    +  y+            + ++ + k ++e+l sa  +k+                                                      
  CCG93122.1 106 GIADYLKLFYTRlayplcpqchqKIRKSSPKTLTEFLYSAYPQKDfficfpvrfsahtpfkeacqlllsqgyskiwfenkiirideeilertgfncqel 204
                 555444422221344556655434444444666666666666666****************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CCG93122.1 205 fvvhslqrtepnkktelleifdesfksgkgrlmivllpekeclvfsdklicpidniefeepfpalfsfnnpkgacptchgfgriiaidydkvipdktls 303
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CCG93122.1 304 iaqgairpfqspnfahwqvflermlkkrkislskkisaytaaewdylihgeaseespeilveedcwcgikgffsilekktyqthiriflshyrlysqcp 402
                 *************************************************************************************************** PP

                 .................................................................................CS-HHHHHHHHHHHHHHH CS
                 .................................................................................xxxxxxxxxxxxxxxxxx RF
       SMC_N 136 .................................................................................lLSgGektLvalaLlfAi 153
                                                                                                  +LSgGe   + l +   +
  CCG93122.1 403 ecsgsrfnkktlcykidsgktalsigellqlpinelihtveaveipafdqaamrikeeifsrlcylndiglgyltldrtsrTLSGGETRRANLTIC--L 499
                 ****************************************************************************************99998887..5 PP

                 HCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 154 qkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvg 210
                  +   + l++lDe    L  k  +++ +l+++ +++   ++v+ ++e+++++ad +v 
  CCG93122.1 500 GNKLTNTLFVLDEPTIGLHPKDCSRLIQLIQKLRDQgNTVVVVEHEETVIKHADYIVE 557
                 5667789*************************99996778899999999999998876 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.044
                 SSEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAi 44 
                   f  i+G  G+GKs+l++ i
  CCG93122.1 631 L-FVTITGVSGCGKSSLVQEI 650
                 4.899***********99765 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.13
                 T.......CS-HHHHHHHHHHHHHH.......HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSE.EEEE-SS CS
                 x.......xxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
       SMC_N 135 e.......lLSgGektLvalaLlfA.......iqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQ.fivislr 198
                         +LSgGe + + +  +++       +++  ++ l +lDe    L    vk++ +ll++  + a  +iv+ ++
  CCG93122.1 831 LqlghplnQLSGGESQRLKILGILSerllnkkTRSHTKQRLIILDEPTTGLHIDDVKRLISLLQKLVDAANtLIVVEHN 909
                 155555559*****88777777778798888888888999************************999886514555555 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.04
                  SETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N    9 nFksyagktvilpfsksftaivGpNGSGKsnlldAilF 46  
                  n ks+   + +++++k  t+++G  GSGKs l   +lF
  CCG93122.1  988 NLKSI---SLEIELAK-TTVLTGISGSGKSTLAFDVLF 1021
                  44444...35555555.89***********99766666 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.016
                  --SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  158 paplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvg 210 
                  +  ly+lDe    L  ++ +k+ + l++ +++   ++++ +++e++++adk++ 
  CCG93122.1 1379 KGILYILDEPTIGLHPTENQKLLNSLEALKTKgNTLVIVEHDTETMKRADKIID 1432
                  5569***********************8877736667788**********9986 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.11
                  EEEETTSSEEEEEESTTSSHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   18 vilpfsksftaivGpNGSGKsnll 41  
                  v++p+ + + +i G  GSGKs ll
  CCG93122.1 1503 VEIPLGR-LVVICGVSGSGKSTLL 1525
                  5555555.889**********987 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 5.6
                  S-HHHHHHHHHHH.HHH............HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEE CS
                  xxxxxxxxxxxxx.xxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  137 LSgGektLvalaL.lfA............iqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklv 209 
                  LSgGe + + la  l+A              + +p+ lyll e    L  + ++k+ +l ++  +    +++i ++ +++++ad ++
  CCG93122.1 1706 LSGGEAQRIKLAKeLIAmeqkriqkmfewGAQKEPKILYLLEEPTIGLHLADIEKFLHLCQSLVEYgHTVVIIEHHPDVIAEADYVI 1792
                  666666555555312244555554444444567888899999988888888888888888877766467778888888888888766 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00029      0.11      17      38 ..      22      43 ..       9      53 .. 0.78
   2 !    8.4   0.0    0.0048       1.7      19      39 ..     627     647 ..     615     652 .. 0.73
   3 !   16.3   0.0   1.6e-05    0.0059      16      38 ..     993    1015 ..     986    1029 .. 0.78
   4 !   12.6   0.0   0.00024     0.086      17      39 ..    1503    1525 ..    1497    1533 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00029
      AAA_29 17 ieidlkgatlltGpsGsGKSTl 38
                ++i  k  t++tG sGsGKS+l
  CCG93122.1 22 LDIPHKALTVITGLSGSGKSSL 43
                45554558************98 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0048
      AAA_29  19 idlkg.atlltGpsGsGKSTll 39 
                 i   g ++ +tG sG GKS+l+
  CCG93122.1 627 IP-LGlFVTITGVSGCGKSSLV 647
                 33.346899***********98 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 1.6e-05
      AAA_29   16 tieidlkgatlltGpsGsGKSTl 38  
                  ++ei+l+ +t+ltG sGsGKSTl
  CCG93122.1  993 SLEIELAKTTVLTGISGSGKSTL 1015
                  567788889*************9 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 0.00024
      AAA_29   17 ieidlkgatlltGpsGsGKSTll 39  
                  +ei l   +++ G sGsGKSTll
  CCG93122.1 1503 VEIPLGRLVVICGVSGSGKSTLL 1525
                  5665555899************8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0027      0.95      25      47 ..      28      51 ..       9     153 .. 0.73
   2 !   14.0   0.0   0.00013     0.048      21      45 ..     627     651 ..     612     663 .. 0.74
   3 ?    0.9   0.1       1.5   5.3e+02      72     145 ..     787     878 ..     752     909 .. 0.52
   4 !   11.0   0.0    0.0012      0.42      26      76 ..    1001    1043 ..     986    1127 .. 0.66
   5 !   11.1   0.0    0.0011       0.4      19      43 ..    1503    1527 ..    1496    1580 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0027
      AAA_16 25 elvllsGesGvGKsslv.rellra 47
                 l++++G sG+GKssl+ ++l+ +
  CCG93122.1 28 ALTVITGLSGSGKSSLAfDTLFAE 51
                5789*************7666632 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 0.00013
      AAA_16  21 sgrpelvllsGesGvGKsslvrell 45 
                  + +  v ++G sG+GKsslv+e+ 
  CCG93122.1 627 IPLGLFVTITGVSGCGKSSLVQEII 651
                 44458899**************986 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 1.5
      AAA_16  72 laqalareellrqlldeaesaeleawrekleeala..............avpelagaea..srllellkrll..allsrderplvlvlDdlq 145
                 ++++ a+e l+    ++a+s+ ++  ++k+ + la              + ++l+g e+    +l  l++ l  ++++++ ++ +++lD+  
  CCG93122.1 787 ILRMTAKEALMFFDPQAADSSRQAILHKKISSLLAlleevgldylqlghPLNQLSGGESqrLKILGILSERLlnKKTRSHTKQRLIILDEPT 878
                 33333333333333333344344444444444444777777788889998888888888663333444444435555555555888888533 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.0012
      AAA_16   26 lvllsGesGvGKsslv.rellralekdggif...lrgkcdqlesaipysalaqal 76  
                   ++l+G sG+GKs+l+ + l+ + +++   f   l+g ++q+         +q l
  CCG93122.1 1001 TTVLTGISGSGKSTLAfDVLFAESRRR---FldsLSGYARQF---------IQSL 1043
                  679*************65555444444...446788888888.........3333 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 0.0011
      AAA_16   19 vrsgrpelvllsGesGvGKsslvre 43  
                  v  + ++lv++ G sG+GKs+l+r 
  CCG93122.1 1503 VEIPLGRLVVICGVSGSGKSTLLRD 1527
                  55555699***************63 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.013       4.5      88     116 ..      15      44 ..       3      56 .. 0.78
   2 !   12.2   0.0   0.00035      0.13      83     130 ..     613     661 ..     598     664 .. 0.78
   3 !   12.9   0.0   0.00021     0.076      76     116 ..     975    1016 ..     952    1027 .. 0.83
   4 !   10.2   0.0    0.0014      0.51      99     117 ..    1508    1526 ..    1478    1546 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.013
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHH CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLi 116
                  ++l+++   + +  ++v+ G SG GKS+L 
   CCG93122.1  15 HNLKAIDLDIPHkALTVITGLSGSGKSSLA 44 
                  5666676666665899************95 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00035
                  -TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  83 saktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  ++ t ++l+el   +    ++++ G SG GKS+L+ ++++    +++e+
   CCG93122.1 613 RKATIHNLQELDVDIPLgLFVTITGVSGCGKSSLVQEIISYSLHRIQEI 661
                  555566677777666654678899***************9988888887 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 0.00021
                   TSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHH CS
  RsgA_GTPase   76 gyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLi 116 
                    ++ l+++  ++++l++++ +++  kt+vl G SG GKStL 
   CCG93122.1  975 RCQSLFIRGARHHNLKSISLEIELaKTTVLTGISGSGKSTLA 1016
                   5677888888999999999999988***************96 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.0014
                   TSEEEEECSTTSSHHHHHH CS
  RsgA_GTPase   99 dktsvlvGqSGvGKStLin 117 
                   ++++v++G SG GKStL+ 
   CCG93122.1 1508 GRLVVICGVSGSGKSTLLR 1526
                   4899*************85 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.4e-05     0.016       1      35 [.       6      43 ..       6      45 .. 0.93
   2 ?    7.3   0.0     0.017         6      22      78 ..     633     688 ..     612     735 .. 0.78
   3 ?    7.0   0.1     0.021       7.4       5      35 ..     982    1015 ..     978    1020 .. 0.70
   4 !   12.5   0.0   0.00043      0.15      19      43 ..    1508    1533 ..    1488    1605 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.4e-05
      AAA_23  1 kLkienfrsfrdqeidF...skgltlItGpNGaGKTTi 35
                +++++ +r ++ + id+   +k lt+ItG  G+GK+++
  CCG93122.1  6 SIRLRKIRTHNLKAIDLdipHKALTVITGLSGSGKSSL 43
                6899999***999999999999**************98 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.017
      AAA_23  22 tlItGpNGaGKTTil.dAiklaLygetprlsrksgrgfeksdveiesegkvkayvelt 78 
                 + ItG  G+GK++++ + i + L  + ++ ++  g  f ++   i+ +++ ++++e++
  CCG93122.1 633 VTITGVSGCGKSSLVqEIISYSLH-RIQEINPPPG-PFLTDRALIKGWENIEEVIEID 688
                 35*************555556555.4666666544.7888888888888888888776 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.021
      AAA_23    5 enfrsfrdqeidF...skgltlItGpNGaGKTTi 35  
                  ++ r ++ ++i +     + t++tG  G+GK+T+
  CCG93122.1  982 RGARHHNLKSISLeieLAKTTVLTGISGSGKSTL 1015
                  55555544444444444589*************8 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 0.00043
      AAA_23   19 kgltlItGpNGaGKTTil.dAiklaL 43  
                    l++I+G  G+GK+T+l d i  a 
  CCG93122.1 1508 GRLVVICGVSGSGKSTLLrDGIFMAV 1533
                  3799**************77777765 PP

>> UvrA_DNA-bind  UvrA DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   5.6e-12     2e-09       1      67 [.     292     358 ..     292     370 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 5.6e-12
                    -S----.-----------GGG..TT-HHHHHHHHHHHTTTS------------S-THHHHH----.. CS
  UvrA_DNA-bind   1 DpdlvvpdpslslaegAiapwsskkssyyrqlleavaehygidldtpfkeLpeeqkdilLyGsgeek 67 
                    D d+v+pd++ls+a+gAi+p++s +    + +le ++++ +i+l+++++ +++ + d l++G+ +e+
     CCG93122.1 292 DYDKVIPDKTLSIAQGAIRPFQSPNFAHWQVFLERMLKKRKISLSKKISAYTAAEWDYLIHGEASEE 358
                    89*******************555555566669*****************************98876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.018       6.4       4      22 ..      26      44 ..      24     111 .. 0.80
   2 ?    7.7   0.0     0.011         4       7      26 ..     632     651 ..     629     673 .. 0.86
   3 ?    0.9   0.3       1.4     5e+02      70     117 ..     839     898 ..     788     915 .. 0.61
   4 ?    7.2   0.0     0.016       5.8       5      22 ..     999    1016 ..     996    1053 .. 0.87
   5 !   10.3   0.2    0.0017      0.62       6      23 ..    1509    1526 ..    1507    1543 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.018
      AAA_22  4 tagilvvtGesGtGKTtll 22
                ++ ++v+tG sG+GK+ l+
  CCG93122.1 26 HKALTVITGLSGSGKSSLA 44
                57789***********987 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.011
      AAA_22   7 ilvvtGesGtGKTtllrrll 26 
                 ++++tG sG+GK+ l++++ 
  CCG93122.1 632 FVTITGVSGCGKSSLVQEII 651
                 789*************9976 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 1.4
      AAA_22  70 a....erlsseellealeqalrarav....ielliiDEaqh.lrs....eealeeLrslln 117
                      e ++++ l  + e+ l+++ +    ++l+i+DE    l +    +++++ L +l++
  CCG93122.1 839 QlsggESQRLKILGILSERLLNKKTRshtkQRLIILDEPTTgL-HiddvKRLISLLQKLVD 898
                 2555544555555555555555555566678899999977777.42234444444444444 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.016
      AAA_22    5 agilvvtGesGtGKTtll 22  
                  a+ +v+tG sG+GK+tl+
  CCG93122.1  999 AKTTVLTGISGSGKSTLA 1016
                  56789***********98 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 0.0017
      AAA_22    6 gilvvtGesGtGKTtllr 23  
                  +++v++G sG+GK+tllr
  CCG93122.1 1509 RLVVICGVSGSGKSTLLR 1526
                  679*************98 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1      0.12        44       2      15 ..      31      44 ..      31      46 .. 0.91
   2 ?    7.8   0.0     0.013       4.7       1      18 [.     633     650 ..     633     685 .. 0.89
   3 !    8.5   0.0     0.008       2.9       2      18 ..    1003    1019 ..    1003    1050 .. 0.79
   4 !    8.4   0.1    0.0082       2.9       1      16 [.    1511    1526 ..    1511    1527 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.12
      AAA_18  2 lltGtpGvGKttla 15
                ++tG +G+GK++la
  CCG93122.1 31 VITGLSGSGKSSLA 44
                59**********98 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.013
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 + +tG++G+GK++l +e+
  CCG93122.1 633 VTITGVSGCGKSSLVQEI 650
                 68************9997 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.008
      AAA_18    2 lltGtpGvGKttlakeL 18  
                  +ltG++G+GK+tla  +
  CCG93122.1 1003 VLTGISGSGKSTLAFDV 1019
                  59***********9776 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0082
      AAA_18    1 IlltGtpGvGKttlak 16  
                  ++++G++G+GK+tl +
  CCG93122.1 1511 VVICGVSGSGKSTLLR 1526
                  79***********976 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0049       1.8      29      54 ..      23      48 ..       5      55 .. 0.86
   2 ?    3.1   0.0      0.18        63      28      51 ..     626     648 ..     601     655 .. 0.81
   3 !    8.9   0.0    0.0029         1      32      58 ..     998    1024 ..     988    1039 .. 0.85
   4 ?    6.7   0.1     0.014       4.9      30      61 ..    1505    1539 ..    1498    1552 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0049
      AAA_25 29 llpagelallaGapgtGKttlaldla 54
                 +p ++l++++G +g+GK+ la d  
  CCG93122.1 23 DIPHKALTVITGLSGSGKSSLAFDTL 48
                5899******************9876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.18
      AAA_25  28 gllpagelallaGapgtGKttlal 51 
                 + +p+g ++ ++G +g+GK+ l+ 
  CCG93122.1 626 D-IPLGLFVTITGVSGCGKSSLVQ 648
                 4.599***************9986 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0029
      AAA_25   32 agelallaGapgtGKttlaldlalava 58  
                  + ++++l+G +g+GK+tla d+ +a +
  CCG93122.1  998 LAKTTVLTGISGSGKSTLAFDVLFAES 1024
                  56789****************988766 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.014
      AAA_25   30 lpagelallaGapgtGKttlald...lalavatGk 61  
                  +p+g l++++G +g+GK+tl+ d   +a++ a+Gk
  CCG93122.1 1505 IPLGRLVVICGVSGSGKSTLLRDgifMAVKEALGK 1539
                  799*****************965333555555555 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.13        45      42      54 ..     277     289 ..     267     296 .. 0.71
   2 ?    2.7   0.1      0.46   1.6e+02      40      52 ..     397     409 ..     370     419 .. 0.67
   3 !    9.2   0.1    0.0042       1.5      14      50 ..     736     768 ..     724     772 .. 0.74
   4 !   13.3   0.5   0.00022     0.079      17      50 ..    1250    1279 ..    1242    1285 .. 0.74
   5 !   11.0   0.1    0.0011      0.41      13      51 ..    1612    1646 ..    1601    1651 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.13
  DnaJ_CXXCXGXG  42 stCpeCeGtGkvi 54 
                      Cp+C+G G++i
     CCG93122.1 277 GACPTCHGFGRII 289
                    4677777777766 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.46
  DnaJ_CXXCXGXG  40 sqstCpeCeGtGk 52 
                      s+CpeC+G+  
     CCG93122.1 397 LYSQCPECSGSRF 409
                    4556777776643 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0042
  DnaJ_CXXCXGXG  14 kktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGt 50 
                    + +C++C G G ++ e++    f + +  +C+ CeG+
     CCG93122.1 736 EGRCPRCLGLGYEKIEMQ----FLSDVFIPCSVCEGK 768
                    457********6555543....45556679*****98 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 0.00022
  DnaJ_CXXCXGXG   17 CktCkGsGvvreeqktlgpfvqqsqstCpeCeGt 50  
                     C+tC G+G+v ee+++     +q+ + CpeC+G+
     CCG93122.1 1250 CPTCLGKGTVGEEEDQ----AEQQPMLCPECQGK 1279
                     9999999976555532....34556789999997 PP

  == domain 5  score: 11.0 bits;  conditional E-value: 0.0011
  DnaJ_CXXCXGXG   13 kkktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtG 51  
                     k+ +C++C G+G+++ ++  l p    +  +C++CeG+ 
     CCG93122.1 1612 KEGRCPDCLGNGTIQISMP-LLP---LFYLPCESCEGKR 1646
                     4567********7655542.444...34579****9986 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0      0.08        29       1      16 [.      29      44 ..      29      58 .. 0.86
   2 ?    3.2   0.0      0.24        87       3      19 ..     634     650 ..     632     657 .. 0.86
   3 ?    6.1   0.0     0.031        11       3      18 ..    1003    1018 ..    1002    1073 .. 0.91
   4 !   12.6   0.2   0.00031      0.11       1      17 [.    1510    1526 ..    1510    1534 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.08
      AAA_33  1 lvllvGlpGsGKstla 16
                l+++ Gl+GsGKs la
  CCG93122.1 29 LTVITGLSGSGKSSLA 44
                57889********998 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.24
      AAA_33   3 llvGlpGsGKstlaerl 19 
                  + G++G+GKs l++++
  CCG93122.1 634 TITGVSGCGKSSLVQEI 650
                 578**********9986 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.031
      AAA_33    3 llvGlpGsGKstlaer 18  
                  +l G +GsGKstla  
  CCG93122.1 1003 VLTGISGSGKSTLAFD 1018
                  678**********965 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 0.00031
      AAA_33    1 lvllvGlpGsGKstlae 17  
                  lv+++G++GsGKstl++
  CCG93122.1 1510 LVVICGVSGSGKSTLLR 1526
                  79*************87 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.41   1.5e+02       3      17 ..      30      44 ..      28      71 .. 0.87
   2 !    9.4   0.0    0.0025      0.91       3      22 ..     633     652 ..     631     657 .. 0.91
   3 ?    5.0   0.0     0.059        21       2      20 ..    1001    1019 ..    1000    1029 .. 0.84
   4 !    9.2   0.1    0.0029         1       1      19 [.    1509    1527 ..    1509    1542 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.41
                EEEEC-TTTCHHHHH CS
       NACHT  3 vilqGeaGsGKTtLl 17
                 +++G +GsGK+ L+
  CCG93122.1 30 TVITGLSGSGKSSLA 44
                799**********98 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0025
                 EEEEC-TTTCHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklal 22 
                 v ++G +G+GK+ L+q++++
  CCG93122.1 633 VTITGVSGCGKSSLVQEIIS 652
                 789**************986 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.059
                  CEEEEC-TTTCHHHHHHHH CS
       NACHT    2 lvilqGeaGsGKTtLlqkl 20  
                  + +l+G +GsGK+tL+  +
  CCG93122.1 1001 TTVLTGISGSGKSTLAFDV 1019
                  789************9666 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0029
                  SCEEEEC-TTTCHHHHHHH CS
       NACHT    1 rlvilqGeaGsGKTtLlqk 19  
                  rlv++ G +GsGK+tLl+ 
  CCG93122.1 1509 RLVVICGVSGSGKSTLLRD 1527
                  789**************85 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.77   2.8e+02       1      19 [.      30      48 ..      30      85 .. 0.71
   2 !   12.7   0.0   0.00022     0.081       2      26 ..     634     659 ..     633     685 .. 0.81
   3 ?    1.9   0.0      0.43   1.5e+02       2      16 ..    1003    1017 ..    1002    1052 .. 0.85
   4 ?    7.0   0.3     0.012       4.3       2      17 ..    1512    1527 ..    1511    1545 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.77
  Viral_helicase1  1 ivvhGvpGcGKStlirkll 19
                     +v+ G  G+GKS+l  + l
       CCG93122.1 30 TVITGLSGSGKSSLAFDTL 48
                     699*********9865555 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00022
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts.lilt 26 
                       + Gv GcGKS+l++++++ s + ++
       CCG93122.1 634 TITGVSGCGKSSLVQEIISYSlHRIQ 659
                      689**************988664444 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.43
  Viral_helicase1    2 vvhGvpGcGKStlir 16  
                       v  G+ G+GKStl  
       CCG93122.1 1003 VLTGISGSGKSTLAF 1017
                       789*********865 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.012
  Viral_helicase1    2 vvhGvpGcGKStlirk 17  
                       v+ Gv G+GKStl+r+
       CCG93122.1 1512 VICGVSGSGKSTLLRD 1527
                       899***********97 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.53   1.9e+02       4      23 ..      29      48 ..      26      76 .. 0.84
   2 !   10.0   0.0    0.0018      0.65       4      35 ..     632     660 ..     630     676 .. 0.86
   3 ?    0.1   0.0       2.1   7.6e+02      56      96 ..     858     905 ..     837     918 .. 0.63
   4 ?    5.0   0.0     0.065        23       3      23 ..    1000    1020 ..     999    1034 .. 0.85
   5 ?    3.5   0.1      0.19        67       3      21 ..    1509    1527 ..    1508    1536 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.53
      AAA_14  4 ilvitGaRrvGKTtllkqli 23
                + vitG+  +GK+ l+++ +
  CCG93122.1 29 LTVITGLSGSGKSSLAFDTL 48
                679************98765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0018
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesily 35 
                  ++itG+  +GK+ l++++i+ +l    +i +
  CCG93122.1 632 FVTITGVSGCGKSSLVQEIISYSL---HRIQE 660
                 589*****************9999...44444 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 2.1
      AAA_14  56 ileklke....ekktylflDE......iqevpewekalkslvdegknldvi 96 
                 +l+k  +     k+++++lDE      i  v+++ + l++lvd   n  ++
  CCG93122.1 858 LLNK--KtrshTKQRLIILDEpttglhIDDVKRLISLLQKLVDAA-NTLIV 905
                 3333..022346889999999555554555577777777777766.54444 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.065
      AAA_14    3 kilvitGaRrvGKTtllkqli 23  
                  k  v+tG+  +GK+tl+++++
  CCG93122.1 1000 KTTVLTGISGSGKSTLAFDVL 1020
                  5689************99875 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.19
      AAA_14    3 kilvitGaRrvGKTtllkq 21  
                  +++vi G+  +GK+tll++
  CCG93122.1 1509 RLVVICGVSGSGKSTLLRD 1527
                  679*************986 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.085        30      16      36 ..      24      44 ..      18      55 .. 0.88
   2 ?    6.3   0.0     0.015       5.5      14      43 ..     625     654 ..     614     661 .. 0.77
   3 ?    1.9   0.0      0.33   1.2e+02      19      38 ..     999    1018 ..     993    1026 .. 0.84
   4 ?    6.1   0.0     0.017       6.2      16      35 ..    1505    1524 ..    1497    1535 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.085
      ATPase 16 ipegrvvlitGepGtGKtifa 36
                ip+++ + itG +G+GK+ +a
  CCG93122.1 24 IPHKALTVITGLSGSGKSSLA 44
                899***************887 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.015
      ATPase  14 gGipegrvvlitGepGtGKtifalqFlikg 43 
                   ip g  v itG++G+GK+ ++++ +  +
  CCG93122.1 625 VDIPLGLFVTITGVSGCGKSSLVQEIISYS 654
                 55899999************9998866555 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.33
      ATPase   19 grvvlitGepGtGKtifalq 38  
                  ++++ +tG +G+GK+++a  
  CCG93122.1  999 AKTTVLTGISGSGKSTLAFD 1018
                  67899***********9965 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.017
      ATPase   16 ipegrvvlitGepGtGKtif 35  
                  ip gr v i+G++G+GK+++
  CCG93122.1 1505 IPLGRLVVICGVSGSGKSTL 1524
                  899**************997 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.87   3.1e+02      33      42 ..     279     288 ..     273     297 .. 0.66
   2 ?    2.2   0.0      0.49   1.8e+02      32      40 ..     400     408 ..     394     413 .. 0.84
   3 ?    4.4   0.0     0.099        35      10      41 ..     736     770 ..     730     774 .. 0.80
   4 !   12.6   2.2   0.00027     0.098      13      41 ..    1250    1281 ..    1248    1286 .. 0.78
   5 ?    7.2   0.1     0.013       4.7      10      41 ..    1613    1647 ..    1606    1651 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.87
                 -TTTTTSSEE CS
   Anti-TRAP  33 CPkCsGkgli 42 
                 CP C G g i
  CCG93122.1 279 CPTCHGFGRI 288
                 6666666655 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.49
                 E-TTTTTSS CS
   Anti-TRAP  32 eCPkCsGkg 40 
                 +CP+CsG  
  CCG93122.1 400 QCPECSGSR 408
                 79***9975 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.099
                 EEE-TTTTTTSEETTE.........E-TTTTTSSE CS
   Anti-TRAP  10 EtkCdaCngsGkiepe...eprasleCPkCsGkgl 41 
                 E  C+ C g G ++ e        ++C  C+Gk +
  CCG93122.1 736 EGRCPRCLGLGYEKIEmqfLSDVFIPCSVCEGKRF 770
                 779********88888545556679*******986 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 0.00027
                  -TTTTTTSEETTE.........E-TTTTTSSE CS
   Anti-TRAP   13 CdaCngsGkiepeepra...sleCPkCsGkgl 41  
                  C++C g G +  ee +a    + CP+C+Gk l
  CCG93122.1 1250 CPTCLGKGTVGEEEDQAeqqPMLCPECQGKRL 1281
                  ******99988885544222799******987 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.013
                  EEE-TTTTTTSEETTE.........E-TTTTTSSE CS
   Anti-TRAP   10 EtkCdaCngsGkiepe...eprasleCPkCsGkgl 41  
                  E  C+ C g G i+      p   l+C  C+Gk  
  CCG93122.1 1613 EGRCPDCLGNGTIQISmplLPLFYLPCESCEGKRY 1647
                  789*********9987555778899*******986 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1      0.02       7.3       6      21 ..      31      46 ..      27      57 .. 0.79
   2 ?    3.3   0.0       0.2        70       2      22 ..     630     650 ..     629     660 .. 0.80
   3 !    8.4   0.0    0.0053       1.9       4      22 ..    1001    1019 ..     999    1032 .. 0.86
   4 ?    2.5   0.1      0.35   1.2e+02       4      18 ..    1510    1524 ..    1507    1543 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.02
                EEESSTTSSHHHHHHH CS
  APS_kinase  6 wltGlsgsGKstiana 21
                 +tGlsgsGKs++a+ 
  CCG93122.1 31 VITGLSGSGKSSLAFD 46
                58***********974 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.2
                 -EEEEEESSTTSSHHHHHHHH CS
  APS_kinase   2 gvvvwltGlsgsGKstianal 22 
                 g+ v +tG+sg GKs++ +++
  CCG93122.1 630 GLFVTITGVSGCGKSSLVQEI 650
                 567899*********998765 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0053
                  EEEEESSTTSSHHHHHHHH CS
  APS_kinase    4 vvwltGlsgsGKstianal 22  
                  +  ltG+sgsGKst+a+ +
  CCG93122.1 1001 TTVLTGISGSGKSTLAFDV 1019
                  6679************875 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.35
                  EEEEESSTTSSHHHH CS
  APS_kinase    4 vvwltGlsgsGKsti 18  
                   v + G+sgsGKst+
  CCG93122.1 1510 LVVICGVSGSGKSTL 1524
                  6889**********7 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       1.6   5.8e+02       2      17 ..      31      46 ..      30      63 .. 0.85
   2 !    8.8   0.0    0.0056         2       2      29 ..     634     661 ..     633     675 .. 0.86
   3 ?    2.6   0.0       0.5   1.8e+02       2      17 ..    1003    1018 ..    1002    1038 .. 0.85
   4 ?    4.8   0.1       0.1        36       1      27 [.    1511    1538 ..    1511    1560 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 1.6
  RNA_helicase  2 wlyGpsgeGKStlake 17
                  +++G sg GKS+la +
    CCG93122.1 31 VITGLSGSGKSSLAFD 46
                  689*********9976 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0056
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklk 29 
                    ++G sg+GKS+l++e+++  l +++++
    CCG93122.1 634 TITGVSGCGKSSLVQEIISYSLHRIQEI 661
                   689**************99988777554 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.5
  RNA_helicase    2 wlyGpsgeGKStlake 17  
                    +l+G sg GKStla +
    CCG93122.1 1003 VLTGISGSGKSTLAFD 1018
                    689**********987 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.1
  RNA_helicase    1 iwlyGpsgeGKStlake.Lakallkklk 27  
                    ++++G sg GKStl ++ +  a+ ++l+
    CCG93122.1 1511 VVICGVSGSGKSTLLRDgIFMAVKEALG 1538
                    689***********98856666665554 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.6   9.5e+02      23      38 ..      30      45 ..      22      64 .. 0.83
   2 !    9.4   0.0    0.0015      0.55      19      43 ..     630     653 ..     614     660 .. 0.81
   3 ?    2.9   0.0      0.15        53      24      41 ..    1003    1020 ..     993    1031 .. 0.82
   4 ?    3.1   0.1      0.13        46      22      38 ..    1510    1526 ..    1501    1538 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.6
                EEEEESTTSSHHHHHH CS
      NB-ARC 23 valvGmgGvGKttlak 38
                  + G  G+GK+ la 
  CCG93122.1 30 TVITGLSGSGKSSLAF 45
                5689********9985 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0015
                 CSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  19 qslvvalvGmgGvGKttlakqilnk 43 
                 + l+v++ G  G+GK+ l+++i++ 
  CCG93122.1 630 G-LFVTITGVSGCGKSSLVQEIISY 653
                 3.89******************875 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.15
                  EEEESTTSSHHHHHHHHC CS
      NB-ARC   24 alvGmgGvGKttlakqil 41  
                   l G  G+GK+tla ++l
  CCG93122.1 1003 VLTGISGSGKSTLAFDVL 1020
                  589**********98886 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.13
                  EEEEEESTTSSHHHHHH CS
      NB-ARC   22 vvalvGmgGvGKttlak 38  
                  +v + G  G+GK+tl++
  CCG93122.1 1510 LVVICGVSGSGKSTLLR 1526
                  6889***********87 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.85   3.1e+02      21      37 ..      28      44 ..      15      98 .. 0.89
   2 !    9.2   0.0     0.003       1.1      21      45 ..     631     655 ..     613     661 .. 0.84
   3 ?   -1.0   0.2       3.8   1.4e+03     112     151 ..     862     899 ..     846     920 .. 0.73
   4 ?    1.6   0.0      0.62   2.2e+02      15      41 ..     994    1020 ..     984    1114 .. 0.79
   5 ?   -2.1   0.0         8   2.9e+03      38      66 ..    1334    1362 ..    1331    1424 .. 0.65
   6 ?    3.6   0.0      0.15        53      22      39 ..    1510    1527 ..    1503    1539 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.85
    ATPase_2 21 eiyfiYGpegsGKtaLl 37
                   +i+G  gsGK++L 
  CCG93122.1 28 ALTVITGLSGSGKSSLA 44
                5689**********996 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.003
    ATPase_2  21 eiyfiYGpegsGKtaLlkeiienle 45 
                  ++ i+G  g+GK++L++eii+ ++
  CCG93122.1 631 LFVTITGVSGCGKSSLVQEIISYSL 655
                 5788*****************9765 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3.8
    ATPase_2 112 kikkkgkkiiiiiDelqklidlglngaellvkeLlnlies 151
                 k +   k+  ii+De        ++  + l++ L++l++ 
  CCG93122.1 862 KTRSHTKQRLIILDEPTTGL--HIDDVKRLISLLQKLVDA 899
                 34445566999999988777..999999999999999886 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.62
    ATPase_2   15 lerepneiyfiYGpegsGKtaLlkeii 41  
                  le e ++  +++G  gsGK++L   ++
  CCG93122.1  994 LEIELAKTTVLTGISGSGKSTLAFDVL 1020
                  4556688899***********976554 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 8
    ATPase_2   38 keiienledkdkyviyyialreesiskld 66  
                   eii++le      +yy +l+++s+s   
  CCG93122.1 1334 PEIIKRLEFICNIGLYYLSLERSSQSLSA 1362
                  68999999999999999999998877544 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.15
    ATPase_2   22 iyfiYGpegsGKtaLlke 39  
                   ++i G  gsGK++Ll+ 
  CCG93122.1 1510 LVVICGVSGSGKSTLLRD 1527
                  689*************97 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.26        94      26      47 ..     478     498 ..     472     531 .. 0.63
   2 !   12.1   0.0   0.00049      0.17      30      89 ..     837     894 ..     829     895 .. 0.82
   3 ?   -1.0   0.0       5.8   2.1e+03      30      41 ..    1703    1714 ..    1699    1726 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.26
     SbcCD_C  26 lsrssgtlSGGekqflaylala 47 
                 l+r s+tlSGGe+   a l+++
  CCG93122.1 478 LDRTSRTLSGGET-RRANLTIC 498
                 678999******9.44444444 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00049
     SbcCD_C  30 sgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                  ++lSGGe+q l  l ++     l++++ +++++ rl++LDE   +l  + +++l++ll+
  CCG93122.1 837 LNQLSGGESQRLKILGIL--SERLLNKKTRSHTKQRLIILDEPTTGLHIDDVKRLISLLQ 894
                 689******999998887..34455554448999*************9999999999987 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 5.8
     SbcCD_C   30 sgtlSGGekqfl 41  
                  + tlSGGe+q +
  CCG93122.1 1703 TPTLSGGEAQRI 1714
                  679******975 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1      0.13        48       2      21 ..      29      48 ..      28      57 .. 0.79
   2 ?    3.4   0.0      0.14        50       3      22 ..     633     652 ..     631     661 .. 0.84
   3 ?    5.9   0.0     0.024       8.8       2      21 ..    1001    1020 ..    1000    1028 .. 0.80
   4 ?    6.6   0.1     0.015       5.4       3      20 ..    1511    1528 ..    1509    1539 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.13
                EEEEEESTTCCHHHHHHHHH CS
        cobW  2 vtvltGflGsGKTtLlnhll 21
                 tv+tG  GsGK++L   +l
  CCG93122.1 29 LTVITGLSGSGKSSLAFDTL 48
                59************976666 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.14
                 EEEEESTTCCHHHHHHHHHC CS
        cobW   3 tvltGflGsGKTtLlnhlle 22 
                 + +tG  G GK++L++++++
  CCG93122.1 633 VTITGVSGCGKSSLVQEIIS 652
                 679**************994 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.024
                  EEEEEESTTCCHHHHHHHHH CS
        cobW    2 vtvltGflGsGKTtLlnhll 21  
                  +tvltG  GsGK+tL   +l
  CCG93122.1 1001 TTVLTGISGSGKSTLAFDVL 1020
                  69*************87777 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.015
                  EEEEESTTCCHHHHHHHH CS
        cobW    3 tvltGflGsGKTtLlnhl 20  
                  +v++G  GsGK+tLl+  
  CCG93122.1 1511 VVICGVSGSGKSTLLRDG 1528
                  79*************975 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       1.3   4.6e+02      33      60 ..      15      42 ..       6      67 .. 0.76
   2 ?    6.3   0.0     0.022       8.1      49      73 ..     634     658 ..     616     666 .. 0.78
   3 ?    0.2   0.1       1.7   6.1e+02     128     170 ..     864     905 ..     854     916 .. 0.81
   4 ?    0.1   0.0       1.8   6.6e+02      34      61 ..     988    1015 ..     983    1035 .. 0.84
   5 ?    3.7   0.0      0.14        52      45      63 ..    1508    1526 ..    1470    1535 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 1.3
       Rad17 33 ewlkadvLesrkkriLLisGPsGCgkst 60
                + lka  L+  +k + +i+G sG gks 
  CCG93122.1 15 HNLKAIDLDIPHKALTVITGLSGSGKSS 42
                4588888988888899**********96 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.022
       Rad17  49 LisGPsGCgkstvvkvLskelgikl 73 
                  i+G sGCgks  v+++      ++
  CCG93122.1 634 TITGVSGCGKSSLVQEIISYSLHRI 658
                 69************98765444433 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.7
       Rad17 128 dlrtdkklilvedlPnkfyrds.dalrevirkylrssealplil 170
                   +t+++li++++     ++d  ++l  +++k +   ++  li+
  CCG93122.1 864 RSHTKQRLIILDEPTTGLHIDDvKRLISLLQKLVDAANT--LIV 905
                 467999*******8899999887*********9999888..443 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.8
       Rad17   34 wlkadvLesrkkriLLisGPsGCgkstv 61  
                   lk+ +Le +  +  +++G sG gkst 
  CCG93122.1  988 NLKSISLEIELAKTTVLTGISGSGKSTL 1015
                  5788889998889999**********94 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.14
       Rad17   45 kriLLisGPsGCgkstvvk 63  
                   r+++i+G sG gkst ++
  CCG93122.1 1508 GRLVVICGVSGSGKSTLLR 1526
                  5799************986 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.14        50       3      48 ..      31      81 ..      29     108 .. 0.71
   2 ?    4.0   0.0      0.15        52       2      19 ..     633     650 ..     632     661 .. 0.86
   3 ?    2.9   0.0      0.32   1.1e+02       3      18 ..    1003    1018 ..    1001    1064 .. 0.65
   4 ?    3.9   0.1      0.16        58       2      17 ..    1511    1526 ..    1510    1527 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.14
      AAA_28  3 vitGgestGKTtll.eaLaar....gypvvpEaareileeklakgedalpw 48
                vitG +++GK++l+   L a+     ++++p + r++l    + + +a++ 
  CCG93122.1 31 VITGLSGSGKSSLAfDTLFAEgqsrYIETFPPYIRQFLLRAEKPKAEAIEG 81
                9************98666644334477888999999887776666655554 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.15
      AAA_28   2 ivitGgestGKTtlleaL 19 
                 + itG +++GK++l++++
  CCG93122.1 633 VTITGVSGCGKSSLVQEI 650
                 78************9986 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.32
      AAA_28    3 vitGgestGKTtllea 18  
                  v+tG +++GK+tl+  
  CCG93122.1 1003 VLTGISGSGKSTLAFD 1018
                  99***********944 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.16
      AAA_28    2 ivitGgestGKTtlle 17  
                  +vi G +++GK+tll+
  CCG93122.1 1511 VVICGVSGSGKSTLLR 1526
                  8*************97 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.54   1.9e+02       5      21 ..      30      46 ..      26      59 .. 0.85
   2 ?    0.9   0.0      0.89   3.2e+02     112     133 ..     523     547 ..     516     553 .. 0.75
   3 ?    2.5   0.0       0.3   1.1e+02       5      22 ..     633     650 ..     630     671 .. 0.86
   4 ?    5.3   0.0     0.041        15       3      22 ..    1000    1019 ..     998    1040 .. 0.79
   5 ?    3.6   0.1      0.13        47       5      20 ..    1511    1526 ..    1508    1529 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.54
      AAA_24  5 iliyGpsgiGKTtlake 21
                 +i+G sg+GK++la  
  CCG93122.1 30 TVITGLSGSGKSSLAFD 46
                689**********9975 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.89
      AAA_24 112 rrllkklqelrk...nvifiahekt 133
                 +rl++ +q+lr+   +v+++ he+t
  CCG93122.1 523 SRLIQLIQKLRDqgnTVVVVEHEET 547
                 566666666666666*******998 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.3
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 + i+G sg GK++l+ e+
  CCG93122.1 633 VTITGVSGCGKSSLVQEI 650
                 689***********9987 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.041
      AAA_24    3 lkiliyGpsgiGKTtlakel 22  
                  +  +++G sg+GK+tla   
  CCG93122.1 1000 KTTVLTGISGSGKSTLAFDV 1019
                  6789************9876 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.13
      AAA_24    5 iliyGpsgiGKTtlak 20  
                  ++i G sg+GK+tl++
  CCG93122.1 1511 VVICGVSGSGKSTLLR 1526
                  79***********986 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.63   2.3e+02      30      55 ..      24      49 ..      12      61 .. 0.76
   2 ?    2.9   0.0      0.19        69      36      55 ..     633     652 ..     626     661 .. 0.84
   3 ?    2.4   0.0      0.27        96      30      54 ..     996    1020 ..     987    1032 .. 0.80
   4 ?    2.3   0.0      0.29   1.1e+02      33      55 ..    1508    1531 ..    1493    1539 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.63
       AAA_7 30 lknkkpvllvGptGtGKtviikdllk 55
                + +k  ++++G +G+GK++++ d+l 
  CCG93122.1 24 IPHKALTVITGLSGSGKSSLAFDTLF 49
                667888899**********9988543 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.19
       AAA_7  36 vllvGptGtGKtviikdllk 55 
                 v ++G +G+GK+++++++++
  CCG93122.1 633 VTITGVSGCGKSSLVQEIIS 652
                 6789************9553 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.27
       AAA_7   30 lknkkpvllvGptGtGKtviikdll 54  
                  ++  k ++l+G +G+GK++++ d+l
  CCG93122.1  996 IELAKTTVLTGISGSGKSTLAFDVL 1020
                  56678999***********998855 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.29
       AAA_7   33 kkpvllvGptGtGKtviikd.llk 55  
                  ++ v+++G +G+GK+++++d ++ 
  CCG93122.1 1508 GRLVVICGVSGSGKSTLLRDgIFM 1531
                  567999***********9986554 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.043        15       1      24 [.      27      50 ..      27     102 .. 0.89
   2 ?    0.4   0.0      0.83     3e+02       4      23 ..     633     652 ..     631     662 .. 0.83
   3 ?    2.7   0.0      0.16        59       4      25 ..    1002    1023 ..     999    1045 .. 0.82
   4 ?    2.2   0.2      0.24        87       2      19 ..    1509    1526 ..    1508    1546 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.043
     DUF2075  1 kavvlVtGvaGtGKtvvllnllae 24
                ka+ ++tG +G+GK+ +++  l++
  CCG93122.1 27 KALTVITGLSGSGKSSLAFDTLFA 50
                6789*************9987765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.83
     DUF2075   4 vlVtGvaGtGKtvvllnlla 23 
                 v +tGv+G GK+ +  +++ 
  CCG93122.1 633 VTITGVSGCGKSSLVQEIIS 652
                 689*********99887765 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.16
     DUF2075    4 vlVtGvaGtGKtvvllnllael 25  
                   + tG +G+GK+ +++ +l++ 
  CCG93122.1 1002 TVLTGISGSGKSTLAFDVLFAE 1023
                  6889************998764 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.24
     DUF2075    2 avvlVtGvaGtGKtvvll 19  
                  ++v++ Gv+G+GK+ +l 
  CCG93122.1 1509 RLVVICGVSGSGKSTLLR 1526
                  589**********98875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       1.4     5e+02       3      15 ..      31      43 ..      30      56 .. 0.88
   2 ?    5.0   0.0     0.071        26       2      21 ..     633     652 ..     632     680 .. 0.84
   3 ?    0.1   0.0       2.2     8e+02       3      15 ..    1003    1015 ..    1001    1027 .. 0.87
   4 ?    4.6   0.1     0.093        33       2      17 ..    1511    1526 ..    1510    1550 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.4
                EEEESTTSSHHHH CS
    MMR_HSR1  3 aivGrpNvGKStL 15
                +i G + +GKS+L
  CCG93122.1 31 VITGLSGSGKSSL 43
                699*********9 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.071
                 EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg 21 
                 v i G +  GKS+L++ ++ 
  CCG93122.1 633 VTITGVSGCGKSSLVQEIIS 652
                 789************99986 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 2.2
                  EEEESTTSSHHHH CS
    MMR_HSR1    3 aivGrpNvGKStL 15  
                  ++ G + +GKStL
  CCG93122.1 1003 VLTGISGSGKSTL 1015
                  789*********9 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.093
                  EEEEESTTSSHHHHHH CS
    MMR_HSR1    2 vaivGrpNvGKStLin 17  
                  v+i G + +GKStL++
  CCG93122.1 1511 VVICGVSGSGKSTLLR 1526
                  89************98 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.5   1.6e+03      26      38 ..      30      42 ..      17      47 .. 0.89
   2 ?    2.8   0.0      0.15        55      11      48 ..     617     655 ..     611     659 .. 0.72
   3 ?    1.1   0.0      0.51   1.8e+02      25      39 ..    1001    1015 ..     990    1022 .. 0.86
   4 ?    4.9   0.0     0.034        12      26      49 ..    1511    1534 ..    1496    1537 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.5
                EEEE-SSSSSTTT CS
        DAP3 26 lvltGekgsGKSv 38
                 v+tG  gsGKS 
  CCG93122.1 30 TVITGLSGSGKSS 42
                59*********95 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.15
                 HHHHTTS-SSS---EEE.EE-SSSSSTTTTHHHHHHHGG CS
        DAP3  11 ikklkkadkkkkvkrlv.ltGekgsGKSvlLlqalayAl 48 
                 i++l++ d + +   +v +tG  g+GKS l+  ++ y l
  CCG93122.1 617 IHNLQELDVDIPLGLFVtITGVSGCGKSSLVQEIISYSL 655
                 5555555555555555449***********999999876 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.51
                  EEEEE-SSSSSTTTT CS
        DAP3   25 rlvltGekgsGKSvl 39  
                    vltG  gsGKS+l
  CCG93122.1 1001 TTVLTGISGSGKSTL 1015
                  579**********97 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.034
                  EEEE-SSSSSTTTTHHHHHHHGGG CS
        DAP3   26 lvltGekgsGKSvlLlqalayAle 49  
                  +v+ G  gsGKS+lL   + +A++
  CCG93122.1 1511 VVICGVSGSGKSTLLRDGIFMAVK 1534
                  5899************99999987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.55     2e+02      19      34 ..      28      43 ..      19      47 .. 0.88
   2 ?    1.0   0.0      0.84     3e+02      20      38 ..     632     650 ..     630     659 .. 0.86
   3 ?    2.5   0.1      0.29     1e+02      19      34 ..    1000    1015 ..     996    1023 .. 0.88
   4 ?    5.1   0.1     0.047        17      19      37 ..    1509    1527 ..    1506    1546 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.55
      AAA_30 19 rvavltGpAGtGKtta 34
                 ++v+tG  G+GK+ +
  CCG93122.1 28 ALTVITGLSGSGKSSL 43
                589**********975 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.84
      AAA_30  20 vavltGpAGtGKttalkal 38 
                 ++++tG+ G GK+ +++++
  CCG93122.1 632 FVTITGVSGCGKSSLVQEI 650
                 6789***********9987 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.29
      AAA_30   19 rvavltGpAGtGKtta 34  
                  +++vltG  G+GK+t+
  CCG93122.1 1000 KTTVLTGISGSGKSTL 1015
                  4789**********97 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.047
      AAA_30   19 rvavltGpAGtGKttalka 37  
                  r++v+ G+ G+GK+t+l+ 
  CCG93122.1 1509 RLVVICGVSGSGKSTLLRD 1527
                  5899************984 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       8.1   2.9e+03      34      45 ..      32      43 ..      27      49 .. 0.85
   2 ?    4.5   0.0      0.04        14      31      51 ..     632     652 ..     618     660 .. 0.86
   3 ?    2.7   0.0      0.14        52      29      46 ..     999    1016 ..     983    1027 .. 0.75
   4 ?    0.8   0.0      0.54   1.9e+02      32      47 ..    1511    1526 ..    1500    1537 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8.1
                EEE-TTSSHHHH CS
        MeaB 34 ltGvPGaGkstl 45
                +tG+ G+Gks l
  CCG93122.1 32 ITGLSGSGKSSL 43
                8*********87 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.04
                 EEEEEE-TTSSHHHHHHHHHH CS
        MeaB  31 vvGltGvPGaGkstlvealgl 51 
                  v +tGv G Gks lv++++ 
  CCG93122.1 632 FVTITGVSGCGKSSLVQEIIS 652
                 588*************99875 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.14
                  SEEEEEEE-TTSSHHHHH CS
        MeaB   29 aqvvGltGvPGaGkstlv 46  
                  a+   ltG+ G+Gkstl 
  CCG93122.1  999 AKTTVLTGISGSGKSTLA 1016
                  667779**********95 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.54
                  EEEEE-TTSSHHHHHH CS
        MeaB   32 vGltGvPGaGkstlve 47  
                  v + Gv G+Gkstl+ 
  CCG93122.1 1511 VVICGVSGSGKSTLLR 1526
                  6689*********985 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       3.9   1.4e+03       3      18 ..      31      46 ..      30      64 .. 0.78
   2 ?    4.8   0.0     0.072        26       4      22 ..     635     653 ..     633     739 .. 0.78
   3 ?    1.4   0.0      0.79   2.8e+02       3      20 ..    1003    1020 ..    1001    1032 .. 0.82
   4 ?    0.6   0.1       1.4   5.1e+02       2      17 ..    1511    1526 ..    1510    1533 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 3.9
                EEE--SSSSHHHHHHH CS
       AAA_5  3 lLvGppGtgKselaer 18
                ++ G +G+gKs+la  
  CCG93122.1 31 VITGLSGSGKSSLAFD 46
                5789********9965 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.072
                 EE--SSSSHHHHHHHGGGG CS
       AAA_5   4 LvGppGtgKselaerlaaa 22 
                 + G +G+gKs+l++++ + 
  CCG93122.1 635 ITGVSGCGKSSLVQEIISY 653
                 78************98665 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.79
                  EEE--SSSSHHHHHHHGG CS
       AAA_5    3 lLvGppGtgKselaerla 20  
                  +L G +G+gKs+la  ++
  CCG93122.1 1003 VLTGISGSGKSTLAFDVL 1020
                  79***********96665 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 1.4
                  EEEE--SSSSHHHHHH CS
       AAA_5    2 vlLvGppGtgKselae 17  
                  v++ G +G+gKs+l +
  CCG93122.1 1511 VVICGVSGSGKSTLLR 1526
                  6899*********986 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.38   1.4e+02     118     147 ..      16      45 ..       4      55 .. 0.80
   2 ?    3.6   0.0     0.078        28     120     149 ..     990    1019 ..     969    1028 .. 0.75
   3 ?    2.3   0.0       0.2        70     130     147 ..    1509    1526 ..    1484    1537 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.38
       T2SSE 118 iaevlrkavrerglilvsGgTgsGKttlly 147
                   +++   + ++ l +++G  gsGK+ l+ 
  CCG93122.1  16 NLKAIDLDIPHKALTVITGLSGSGKSSLAF 45 
                 556777778899999**********98874 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.078
       T2SSE  120 evlrkavrerglilvsGgTgsGKttllyal 149 
                  + ++  ++  ++ +++G  gsGK+tl+  +
  CCG93122.1  990 KSISLEIELAKTTVLTGISGSGKSTLAFDV 1019
                  34566677789999***********98655 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.2
       T2SSE  130 glilvsGgTgsGKttlly 147 
                   l+++ G  gsGK+tll 
  CCG93122.1 1509 RLVVICGVSGSGKSTLLR 1526
                  57899***********95 PP

>> RACo_linker  RACo linker region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       2.3   8.1e+02      19      40 ..     510     531 ..     500     559 .. 0.70
   2 ?    7.7   0.1    0.0089       3.2       9      43 ..     864     898 ..     860     919 .. 0.82
   3 ?   -2.0   0.0       9.1   3.3e+03      42      42 ..    1378    1378 ..    1341    1437 .. 0.48

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 2.3
  RACo_linker  19 leePtledpsgDleRLkeaLek 40 
                  l+ePt+  +  D+ RL++ ++k
   CCG93122.1 510 LDEPTIGLHPKDCSRLIQLIQK 531
                  6778888888888887765544 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0089
  RACo_linker   9 dPavkkvyveleePtledpsgDleRLkeaLekqwd 43 
                   +++k+  + l+ePt   +++D++RL+  L+k +d
   CCG93122.1 864 RSHTKQRLIILDEPTTGLHIDDVKRLISLLQKLVD 898
                  57899999**********************99775 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 9.1
  RACo_linker   42 w 42  
                   +
   CCG93122.1 1378 L 1378
                   3 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.052        19      91     112 ..     634     655 ..     624     669 .. 0.82
   2 ?    3.8   0.0     0.055        20      66     108 ..    1482    1529 ..    1468    1534 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.052
  Adeno_IVa2  91 viyGPtGsGksqllrnlisskl 112
                  i G  G+Gks l++++is  l
  CCG93122.1 634 TITGVSGCGKSSLVQEIISYSL 655
                 589***************9876 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.055
  Adeno_IVa2   66 kldakllrddGelsslnyglq...Pv..iGviyGPtGsGksqllrnli 108 
                  k+++ +l+ +G +s   y+l    P+  + vi G  GsGks llr+ i
  CCG93122.1 1482 KKNTAWLKIEGICSNNLYDLTveiPLgrLVVICGVSGSGKSTLLRDGI 1529
                  5667778888888877777652223222459**************855 PP

>> zf-CSL  CSL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   0.00066      0.24      19      51 ..     366     405 ..     352     406 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00066
                 EEETTSSE..EEEEHHHHHTT.........--EEEETTSS CS
      zf-CSL  19 ypCRCgde..Felteedleegae.....gaevvvqCssCS 51 
                  +C Cg +  F++ e++  + ++     ++ +  qC++CS
  CCG93122.1 366 EDCWCGIKgfFSILEKKTYQTHIriflsHYRLYSQCPECS 405
                 58******************9889***************9 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.45   1.6e+02      15      36 ..      26      47 ..      15     103 .. 0.84
   2 ?   -0.3   0.0       1.5   5.5e+02      19      37 ..     633     651 ..     631     658 .. 0.83
   3 ?    0.6   0.0      0.82   2.9e+02      18      34 ..    1001    1017 ..     991    1027 .. 0.85
   4 ?    1.8   0.0      0.34   1.2e+02      18      34 ..    1510    1526 ..    1507    1530 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.45
  Zeta_toxin 15 rPklillgGqpGAGKselaell 36
                +++l ++ G +G+GKs+la ++
  CCG93122.1 26 HKALTVITGLSGSGKSSLAFDT 47
                678999***********98654 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.5
  Zeta_toxin  19 illgGqpGAGKselaellk 37 
                 + + G +G+GKs+l +++ 
  CCG93122.1 633 VTITGVSGCGKSSLVQEII 651
                 668899********98876 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.82
  Zeta_toxin   18 lillgGqpGAGKselae 34  
                    +l G +G+GKs+la 
  CCG93122.1 1001 TTVLTGISGSGKSTLAF 1017
                  56899*********985 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.34
  Zeta_toxin   18 lillgGqpGAGKselae 34  
                  l+++ G +G+GKs+l++
  CCG93122.1 1510 LVVICGVSGSGKSTLLR 1526
                  7899**********987 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.5   5.3e+02      35      54 ..      24      42 ..       9      48 .. 0.80
   2 ?   -1.4   0.0       3.3   1.2e+03      43      60 ..     634     651 ..     618     655 .. 0.90
   3 ?   -0.5   0.1       1.8   6.6e+02      33      54 ..     996    1014 ..     981    1016 .. 0.74
   4 ?    6.2   0.0     0.016       5.6      42      57 ..    1511    1526 ..    1485    1533 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.5
                  GGGS-.SEEEE--TTSSHHH CS
  FtsK_SpoIIIE 35 lkkmashllvaGatgsGKSt 54
                  ++  a  +++ G +gsGKS 
    CCG93122.1 24 IPHKA-LTVITGLSGSGKSS 42
                  44444.789*********96 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.3
                   EEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  43 lvaGatgsGKStalntLi 60 
                    + G +g GKS  ++ +i
    CCG93122.1 634 TITGVSGCGKSSLVQEII 651
                   689***********9988 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.8
                    EEGGGS-.SEEEE--TTSSHHH CS
  FtsK_SpoIIIE   33 ldlkkmashllvaGatgsGKSt 54  
                    ++l+k    +++ G +gsGKSt
    CCG93122.1  996 IELAKT---TVLTGISGSGKST 1014
                    444444...4899********9 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.016
                    EEEE--TTSSHHHHHH CS
  FtsK_SpoIIIE   42 llvaGatgsGKStaln 57  
                    ++++G +gsGKSt l+
    CCG93122.1 1511 VVICGVSGSGKSTLLR 1526
                    79***********998 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1       2.3   8.4e+02       2      18 ..      30      46 ..      29      56 .. 0.80
   2 ?    1.4   0.0      0.85     3e+02      25      69 ..     408     535 ..     404     555 .. 0.87
   3 ?   -0.7   0.0       3.7   1.3e+03      36      88 ..     800     862 ..     632     906 .. 0.57
   4 ?    4.2   0.1      0.12        42       3      26 ..    1003    1026 ..    1001    1029 .. 0.84
   5 ?   -0.3   0.0       2.9     1e+03       2      16 ..    1511    1525 ..    1510    1527 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 2.3
                EEEESSTTSSHHHHHHH CS
                xxxxxxxxxxxxxxxxx RF
        CbiA  2 aiastkGGvGKTtlaan 18
                +++ + +G+GK++la  
  CCG93122.1 30 TVITGLSGSGKSSLAFD 46
                788999*******9975 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.85
                 HTT--EEEEEEEESSCCCCHHTTEB-HHHH..................................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................... RF
        CbiA  25 rrglrVllvDaDpqannlaileglendiep..................................................................... 54 
                 r ++++l ++ D   ++l+i e l+  i++                                                                     
  CCG93122.1 408 RFNKKTLCYKIDSGKTALSIGELLQLPINElihtveaveipafdqaamrikeeifsrlcylndiglgyltldrtsrtlsggetrranlticlgnkltnt 506
                 678999999999999999996666666666778888899999999999999999999999999999999999999999999999999999999999999 PP

                 ..............CCHCCCHHHHHHCHC CS
                 ..............xxxxxxxxxxxxxxx RF
        CbiA  55 ..............dlkrllellealgkk 69 
                               d++rl++l+++l+ +
  CCG93122.1 507 lfvldeptiglhpkDCSRLIQLIQKLRDQ 535
                 99999999999999999999999999876 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 3.7
                 EESSCCCCHHTTEB-HHHH....................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS.. CS
                 xxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  36 Dpqannlaileglendiep....................dlkrllellealgkkkalllkiagvvlnrvdgen 88 
                 Dpqa  ++          +                    d  +l+  l++l+++ ++ lki+g++  r  +++
  CCG93122.1 800 DPQAADSS----------RqailhkkissllalleevglDYLQLGHPLNQLSGGESQRLKILGILSERLLNKK 862
                 33333333..........0233333333455555555554444444444444444444555555555544443 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.12
                  EEESSTTSSHHHHHHHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA    3 iastkGGvGKTtlaanLaralarr 26  
                  +  + +G+GK+tla   ++a +rr
  CCG93122.1 1003 VLTGISGSGKSTLAFDVLFAESRR 1026
                  67788*********9999988876 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 2.9
                  EEEESSTTSSHHHHH CS
                  xxxxxxxxxxxxxxx RF
        CbiA    2 aiastkGGvGKTtla 16  
                  +++ + +G+GK+tl+
  CCG93122.1 1511 VVICGVSGSGKSTLL 1525
                  677788*******85 PP

>> Cys_rich_KTR  Cysteine-rich KTR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.84     3e+02       5      15 ..     122     132 ..     118     142 .. 0.77
   2 ?    6.8   0.1     0.016       5.9       6      38 ..    1250    1281 ..    1248    1286 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.84
  Cys_rich_KTR   5 lcPvCgnkTRl 15 
                   lcP C++k R+
    CCG93122.1 122 LCPQCHQKIRK 132
                   68888888775 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.016
  Cys_rich_KTR    6 cPvCgnkTRlkiredTvLknfpLfCPKCkqetl 38  
                    cP+C +k      ed   +++p+ CP C+ + l
    CCG93122.1 1250 CPTCLGKGTVGEEED-QAEQQPMLCPECQGKRL 1281
                    999*99987776666.5699********97765 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       4.3   1.5e+03      57      69 ..      31      43 ..      26      54 .. 0.86
   2 ?    5.0   0.0     0.032        11      56      75 ..     633     652 ..     611     661 .. 0.86
   3 ?    0.8   0.0      0.63   2.3e+02      52      70 ..     998    1016 ..     987    1030 .. 0.83
   4 ?   -1.0   0.1       2.2   7.8e+02      56      71 ..    1511    1526 ..    1507    1537 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.3
      DUF815 57 LLwGarGtGKSsl 69
                +++G  G+GKSsl
  CCG93122.1 31 VITGLSGSGKSSL 43
                579*********8 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.032
      DUF815  56 vLLwGarGtGKSslvkalln 75 
                 v ++G  G+GKSslv+ +++
  CCG93122.1 633 VTITGVSGCGKSSLVQEIIS 652
                 5689***********98875 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.63
      DUF815   52 pannvLLwGarGtGKSslv 70  
                   a+  +L+G  G+GKS+l 
  CCG93122.1  998 LAKTTVLTGISGSGKSTLA 1016
                  688999**********985 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.2
      DUF815   56 vLLwGarGtGKSslvk 71  
                  v++ G  G+GKS+l++
  CCG93122.1 1511 VVICGVSGSGKSTLLR 1526
                  7889*********998 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1       1.1   3.8e+02       4      16 ..      32      44 ..      29      58 .. 0.83
   2 ?    6.4   0.1     0.019       6.7       2      20 ..     633     651 ..     632     661 .. 0.85
   3 ?   -0.4   0.1       2.2     8e+02       4      16 ..    1004    1016 ..    1003    1025 .. 0.86
   4 ?    2.8   0.1      0.24        86       2      17 ..    1511    1526 ..    1510    1549 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 1.1
         PRK  4 vagsSGaGkttva 16
                ++g SG+Gk+++a
  CCG93122.1 32 ITGLSGSGKSSLA 44
                8*********985 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.019
         PRK   2 IgvagsSGaGkttvarkle 20 
                 + ++g SG+Gk+++ +++ 
  CCG93122.1 633 VTITGVSGCGKSSLVQEII 651
                 78***********998875 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2.2
         PRK    4 vagsSGaGkttva 16  
                  ++g SG+Gk+t+a
  CCG93122.1 1004 LTGISGSGKSTLA 1016
                  69*********86 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.24
         PRK    2 IgvagsSGaGkttvar 17  
                  + ++g SG+Gk+t+ r
  CCG93122.1 1511 VVICGVSGSGKSTLLR 1526
                  569**********977 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       4.1   1.5e+03     125     135 ..     122     132 ..     113     134 .. 0.81
   2 ?    1.1   0.0      0.77   2.8e+02     123     144 ..     276     297 ..     268     301 .. 0.83
   3 ?    5.1   0.1     0.044        16      71      95 ..     396     420 ..     372     427 .. 0.77
   4 ?    2.2   0.2      0.34   1.2e+02     110     131 ..    1257    1278 ..    1185    1285 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 4.1
     TackOD1 125 eCpkCktkLrh 135
                  Cp+C++k+r+
  CCG93122.1 122 LCPQCHQKIRK 132
                 59999999986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.77
     TackOD1 123 kleCpkCktkLrhiGvDYdrpl 144
                 k  Cp+C+   r i +DYd+++
  CCG93122.1 276 KGACPTCHGFGRIIAIDYDKVI 297
                 568****************986 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.044
     TackOD1  71 drirlCpsCksghlnvrevCpkCkS 95 
                     +Cp+C+++++n +  C k  S
  CCG93122.1 396 RLYSQCPECSGSRFNKKTLCYKIDS 420
                 45679***************88766 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.34
     TackOD1  110 gnvgpeeeflkegkleCpkCkt 131 
                  g+vg+ee+  +++ + Cp+C+ 
  CCG93122.1 1257 GTVGEEEDQAEQQPMLCPECQG 1278
                  7888888888888888888874 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.42   1.5e+02      44      65 ..      24      45 ..       3      52 .. 0.78
   2 ?   -2.0   0.1       7.2   2.6e+03      50      64 ..     633     647 ..     627     652 .. 0.87
   3 ?    0.8   0.3      0.97   3.5e+02      99     146 ..     859     905 ..     854     913 .. 0.79
   4 ?    2.8   0.0      0.24        85      44      65 ..     996    1017 ..     982    1027 .. 0.84
   5 ?    0.0   0.1       1.7   6.2e+02      50      63 ..    1511    1524 ..    1507    1533 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.42
   IstB_IS21 44 iekkenivllGpsGvGKshlai 65
                i +k+  v++G sG GKs la 
  CCG93122.1 24 IPHKALTVITGLSGSGKSSLAF 45
                56677889***********995 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 7.2
   IstB_IS21  50 ivllGpsGvGKshla 64 
                 + ++G sG GKs l 
  CCG93122.1 633 VTITGVSGCGKSSLV 647
                 6799********885 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.97
   IstB_IS21  99 laralkrllkvdllilDdlgllpldqaeaellfeviekryerrsiiit 146
                 l+++ ++ +k +l+ilD+   + l  ++ + l  +++k ++ + ++i 
  CCG93122.1 859 LNKKTRSHTKQRLIILDEPT-TGLHIDDVKRLISLLQKLVDAANTLIV 905
                 678889999*********75.457777788899999998888887775 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.24
   IstB_IS21   44 iekkenivllGpsGvGKshlai 65  
                  ie ++  vl+G sG GKs la 
  CCG93122.1  996 IELAKTTVLTGISGSGKSTLAF 1017
                  5667889*************96 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 1.7
   IstB_IS21   50 ivllGpsGvGKshl 63  
                  +v++G sG GKs l
  CCG93122.1 1511 VVICGVSGSGKSTL 1524
                  89*********977 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       5.3   1.9e+03       3      16 ..      31      44 ..      30      48 .. 0.87
   2 ?    5.5   0.0     0.042        15       2      21 ..     633     652 ..     632     659 .. 0.91
   3 ?    3.1   0.1      0.22        78       3      19 ..    1003    1019 ..    1001    1025 .. 0.87
   4 ?    1.8   0.1      0.55     2e+02       2      17 ..    1511    1526 ..    1510    1539 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 5.3
                EEE--TTSSHHHHH CS
    NTPase_1  3 fiTGppGvGKtTlv 16
                +iTG +G+GK+ l 
  CCG93122.1 31 VITGLSGSGKSSLA 44
                79*********885 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.042
                 EEEE--TTSSHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvle 21 
                 v iTG +G GK+ lv+ +++
  CCG93122.1 633 VTITGVSGCGKSSLVQEIIS 652
                 78**************9986 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.22
                  EEE--TTSSHHHHHHHH CS
    NTPase_1    3 fiTGppGvGKtTlvkkv 19  
                  ++TG +G+GK+Tl   v
  CCG93122.1 1003 VLTGISGSGKSTLAFDV 1019
                  79***********8766 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.55
                  EEEE--TTSSHHHHHH CS
    NTPase_1    2 vfiTGppGvGKtTlvk 17  
                  v+i G +G+GK+Tl++
  CCG93122.1 1511 VVICGVSGSGKSTLLR 1526
                  789***********86 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       3.4   1.2e+03      17      38 ..     526     547 ..     523     553 .. 0.86
   2 ?    3.8   0.0      0.14        51       2      22 ..     633     653 ..     632     662 .. 0.86
   3 ?   -1.3   0.0       5.3   1.9e+03       4      18 ..    1004    1018 ..    1002    1027 .. 0.81
   4 ?    3.8   0.1      0.14        49       2      20 ..    1511    1529 ..    1510    1538 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 3.4
        MobB  17 eklipelkarglrvgtiKhahh 38 
                  +li++l+++g +v ++ h++ 
  CCG93122.1 526 IQLIQKLRDQGNTVVVVEHEET 547
                 689**************99875 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.14
        MobB   2 lgivgksgsGKTtLleklipe 22 
                 ++i+g sg+GK +L++++i+ 
  CCG93122.1 633 VTITGVSGCGKSSLVQEIISY 653
                 789**************9976 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 5.3
        MobB    4 ivgksgsGKTtLlek 18  
                  ++g sgsGK tL   
  CCG93122.1 1004 LTGISGSGKSTLAFD 1018
                  689********9765 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.14
        MobB    2 lgivgksgsGKTtLlekli 20  
                  + i+g sgsGK tLl   i
  CCG93122.1 1511 VVICGVSGSGKSTLLRDGI 1529
                  689***********98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1834 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              50  [number of targets reported over threshold]
# CPU time: 1.21u 0.33s 00:00:01.54 Elapsed: 00:00:00.51
# Mc/sec: 10764.50
//
Query:       CCG93123.1  [L=539]
Description: Pyruvate decarboxylase or related thiamine pyrophosphate-requiring enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-39  134.6   0.0    5.3e-39  133.6   0.0    1.5  1  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    1.1e-23   83.7   0.0    7.5e-23   81.0   0.0    2.3  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    2.6e-20   72.5   0.0    4.9e-20   71.7   0.0    1.4  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   8.8e-43   5.3e-39       1     170 [.       1     172 [.       1     174 [. 0.94

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 8.8e-43
                   EEHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEE CS
  TPP_enzyme_N   1 mtvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvls 97 
                   mt+ ++l+r L a++v+hvfgvpG+ +l++ld + +e g++++ + +Eqga+faAd+yar+ g + +v+ t+ +G + +++ +aeA+ +++P+lv+s
    CCG93123.1   1 MTTTQYLARQLLAHKVQHVFGVPGDYSLKILDTFIKE-GLQIINTCDEQGAGFAADAYARLNG-LSAVCITYCVGGLKVTNPIAEAYAEKSPVLVIS 95 
                   7999*********************************.7**********************98.6666667999*********************** PP

                   EE--CCCHH.....S..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEEH CS
  TPP_enzyme_N  98 gdrptslrg.....qgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevde 170
                   g ++ s+r+     ++  ++   ql++f+ +t +a  +++p+++ e++ rAi+ a  + ++P+yle+p+d+ ++e++ 
    CCG93123.1  96 GAPGISERKkdpllHHKVKDFNTQLKVFEALTVFAAILENPRDIGEQILRAIQLA-LQYKRPAYLEIPRDMASAEIAI 172
                   *********98887666664449********************************.99****************9986 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.18   1.1e+03     133     153 .]     141     161 ..     111     161 .. 0.70
   2 !   81.0   0.0   1.3e-26   7.5e-23      15     153 .]     390     519 ..     377     519 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.18
                   HHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C 133 eeleealkealekkgpaliev 153
                   e++ +a++ al+ k+pa++e+
    CCG93123.1 141 EQILRAIQLALQYKRPAYLEI 161
                   56667777777******9986 PP

  == domain 2  score: 81.0 bits;  conditional E-value: 1.3e-26
                   TSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB.BS--- CS
  TPP_enzyme_C  15 vkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfggkrksgpagkdlkpv 111
                   +++ +++++++++++ G+++paAiGa+lakp+   ++i+GDG+f+m++ el+t +r++l  ++++lnN+gy   +   +  ++         dl + 
    CCG93123.1 390 IHESTEFISPAYYASVGFSIPAAIGAALAKPHLIPFVICGDGAFQMTGIELSTTCRYKLHPIILLLNNSGYSTERIFLDGPFN---------DLVNW 477
                   456789999**************************************************************888876433332.........27899 PP

                   -HHHHHHHTTSE.EEEESSH.HHHHHHHHHHHH.CSSSEEEEEE CS
  TPP_enzyme_C 112 dfaklaealGak.garvekadveeleealkeal.ekkgpaliev 153
                   ++ k+ e lG+   ++v+++   el++a+++a+ +++ + liev
    CCG93123.1 478 NYSKITELLGCGrSCVVKTN--RELKKAIERAIvNRDSFWLIEV 519
                   ************999*9999..**********999999999997 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   8.3e-24   4.9e-20       2      98 ..     194     290 ..     193     325 .. 0.88

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 8.3e-24
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttgse 97 
                    +a ++++aa +p+il++ +++r+g ++el++l +++giPv  tl gk+vi e+hp+y+g + g +gs+++ + +e++D++++lG+ ++di+  gs 
    CCG93123.1 194 TEAKQMIEAAAQPLILADVEIQRFGLQKELEQLTNTTGIPVSATLLGKSVIAETHPHYIGvYEGATGSEEVCAFFEKSDCLILLGVFMTDIT-LGST 289
                   6899********************************************************999***************************64.4444 PP

                   T CS
  TPP_enzyme_M  98 p 98 
                   +
    CCG93123.1 290 R 290
                   3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3673.17
//
Query:       CCG93124.1  [L=226]
Description: DNA-binding response regulator, OmpR family (REC-wHTH domains) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-28   99.2   0.0    2.3e-28   98.6   0.0    1.3  1  Response_reg  Response regulator receiver domain
    3.1e-18   65.6   0.0    6.9e-18   64.5   0.0    1.6  1  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.0   2.6e-32   2.3e-28       1     111 [.       3     112 ..       3     113 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 2.6e-32
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +liv+Dd++vr+ ++ +l+ egy +v+e+edg+ea  ll++ ++dl +lD+++p  dG+ ++k+ir++  ++p+++l+++se +d+v++l+agadd+
    CCG93124.1   3 ILIVEDDQKVRKHVKGALQAEGY-SVEECEDGEEAQWLLENYSYDLAILDLMLPVKDGIGIVKQIRRKGISIPILFLSGRSEVSDRVHGLDAGADDY 98 
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l Kpf+  eLl+++
    CCG93124.1  99 LIKPFSTIELLARV 112
                   **********9998 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   7.7e-22   6.9e-18       1      77 []     145     220 ..     145     220 .. 0.96

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 7.7e-22
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  g+++elt++ef+lL+lLle+++++v ++ + e++w++ +d+++  v+vhi++LR+k++  +  p l++t+rgvG+ l
   CCG93124.1 145 GHSIELTNREFELLRLLLESAPNPVNKAIITEKIWDRCFDSETALVNVHINHLRQKIHL-PGLPPLLHTIRGVGFTL 220
                  5789*******************************************************.7799**********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1590.41
//
Query:       CCG93125.1  [L=323]
Description: Signal transduction histidine kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0016   18.9   0.1      0.042   14.4   0.0    2.8  2  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
     0.0049   16.9   2.3       0.01   15.9   1.6    2.0  2  HisKA           His Kinase A (phospho-acceptor) domain
  ------ inclusion threshold ------
      0.069   13.5   3.8       0.12   12.8   2.5    2.0  2  Dict-STAT-coil  Dictyostelium STAT, coiled coil
      0.073   12.9   1.4        3.4    7.5   0.1    2.8  2  Vpu             Vpu protein
       0.12   12.4   0.9        0.2   11.8   0.9    1.2  1  ApoLp-III       Apolipophorin-III precursor (apoLp-III)
       0.15   12.7   0.7       0.44   11.2   0.7    1.8  1  DUF883          Bacterial protein of unknown function (DUF883


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.59   1.8e+03      22      53 ..     180     220 ..     161     224 .. 0.63
   2 !   14.4   0.0   1.4e-05     0.042       2      33 ..     229     258 ..     228     311 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.59
                 STTTEEEEEEEE...EE......TEEEEEEEESSSSSTTHH CS
   HATPase_c  22 tkageieveika...se......ddlvisveDnGiGipked 53 
                 +++g+++++ ++   ++      + +++  e+ G+ i +e+
  CCG93125.1 180 AEKGHLTIHWEKmelEKtteiiiEGFRLLCENEGRHIHVEK 220
                 35566655444333311444555677777888888887765 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveika 33 
                 d++ L+qi+ nl+ Na+k+    g+i++++k+
  CCG93125.1 229 DPSYLKQILYNLMANAMKH--GFGDITIRMKK 258
                 7889**************9..46889999984 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.3     4e+03      31      56 ..      96     121 ..      66     123 .. 0.66
   2 !   15.9   1.6   3.4e-06      0.01       4      66 ..     125     182 ..     122     183 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.3
                 .T-HSSCHHHHHHHHHHHHHHHHHHH CS
       HisKA  31 gklteelkeyletiesearrldhlve 56 
                 ++++ee   +++ i +    ++++ve
  CCG93125.1  96 DRYPEEFLPLVNEINKLLSKIQKVVE 121
                 56777777777777777777777766 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 3.4e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   4 rflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 + +a + HELr PL+  +  +e   +      +  e  e iese +rl++  e+   l++ e 
  CCG93125.1 125 KEAAELVHELRVPLTLAKIRLEKSLE-----KMDPEIAEAIESELERLQQHMERAILLTKAEK 182
                 668999**************999766.....7999****************999999999886 PP

>> Dict-STAT-coil  Dictyostelium STAT, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.5   3.9e-05      0.12       2      74 ..     104     176 ..     103     195 .. 0.93
   2 ?   -1.2   0.0      0.85   2.6e+03      82     102 ..     292     313 ..     287     319 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-05
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-- CS
  Dict-STAT-coil   2 eilneiykLqleqketlekmiiaqkqlLaelsqildenseetlksLqqeqkkLksqldsEltaLdqlkkqtiL 74 
                     +++nei kL+++ ++++e    +   l+ el  +l+  ++   ksL++    + + ++sEl+ L+q  +  iL
      CCG93125.1 104 PLVNEINKLLSKIQKVVEESGKEAAELVHELRVPLTLAKIRLEKSLEKMDPEIAEAIESELERLQQHMERAIL 176
                     689***************************************************************8887776 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.85
                     HHHHHHHHHHHHHHHH.HHHHH CS
  Dict-STAT-coil  82 ldiLkqdleiqlkqLe.lyqeE 102
                     l+ ++ +++i +kqL+ ly   
      CCG93125.1 292 LVSVHGNMTIRYKQLNsLYCAK 313
                     5566778999999995366555 PP

>> Vpu  Vpu protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.025        73       4      36 ..       5      40 ..       1      48 [. 0.66
   2 ?    7.5   0.1    0.0011       3.4      37      57 ..     107     127 ..      88     135 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.025
         Vpu  4 leliglialivalii.aivvWtivyre..ykkikkq 36
                ++l ++i   + l++ ai+ W  +++e  +++ k+ 
  CCG93125.1  5 WHLFTVIFSFIFLFLsAIFHWIAAAKEaqFLQSKEH 40
                56677777777766669****998775224555554 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0011
         Vpu  37 keierlikrireraedSgnES 57 
                 +ei++l+ +i+++ e+Sg E 
  CCG93125.1 107 NEINKLLSKIQKVVEESGKEA 127
                 89****************996 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.9   6.6e-05       0.2      34      98 ..     105     173 ..     101     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.6e-05
   ApoLp-III  34 lvdqlkqvikslqeelkkksdeleealkevkkkie....etadklseenPevkkkaqelqekvQsgvqs 98 
                 lv++++++ +++q  + +   e++e++ e++  ++    +  ++l++ +Pe++++++   e +Q+  + 
  CCG93125.1 105 LVNEINKLLSKIQKVVEESGKEAAELVHELRVPLTlakiRLEKSLEKMDPEIAEAIESELERLQQHMER 173
                 7999***************************98873333445667779****************98875 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   0.00015      0.44       4      60 ..     106     162 ..     104     175 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
      DUF883   4 eaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerake 60 
                  +e+++ll++++++++e+++ea+e ++elR  l+ +  r+ ++l+++  ++ae +++
  CCG93125.1 106 VNEINKLLSKIQKVVEESGKEAAELVHELRVPLTLAKIRLEKSLEKMDPEIAEAIES 162
                 689***************************887777777777776666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1512  (0.0843326); expected 358.6 (0.02)
Passed bias filter:                     1018  (0.0567795); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 2244.05
//
Query:       CCG93126.1  [L=233]
Description: Periplasmic protein TonB [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-23   81.7   0.0    3.8e-23   81.7   0.0    2.0  3  TonB_C    Gram-negative bacterial TonB protein C-terminal
      5e-06   26.7   0.7    9.6e-06   25.8   0.0    1.8  2  TonB_2    TonB C terminal


Domain annotation for each model (and alignments):
>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.7   1.6e+04      59      75 ..      91     107 ..      89     111 .. 0.65
   2 ?   -1.5   0.6      0.39   3.5e+03      55      70 ..     125     140 ..     104     144 .. 0.55
   3 !   81.7   0.0   4.2e-27   3.8e-23       2      79 .]     154     231 ..     153     231 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.7
                 TT--EEE......EEEE CS
      TonB_C  59 papkngkpvtvkitvpi 75 
                 p p++ +p+t + ++pi
  CCG93126.1  91 PEPQQPQPKTESPQQPI 107
                 66666666666666655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.39
                 -EE-TT--EEE..... CS
      TonB_C  55 wkfkpapkngkpvtvk 70 
                 +  kpapk  +pv  +
  CCG93126.1 125 PIKKPAPKPQQPVSQR 140
                 3334555555566555 PP

  == domain 3  score: 81.7 bits;  conditional E-value: 4.2e-27
                 -----HHHHHHTEEEEEEEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT-EE-TT--EEE......EEEEEEEE CS
      TonB_C   2 epeYPeeArrrgieGtvtveftidpdGnvtnvkvvkssgseiLdkaAleavrkwkfkpapkngkpvtvkitvpirFkl 79 
                 +p YPeeAr++g++G+v + ++i+p G+v+++++ +ssg+++Ld aA++av++w+f pa+ ++ pv+ ++ vp++F+l
  CCG93126.1 154 PPIYPEEARKKGEQGVVYIWVKISPAGTVSSLSIYRSSGFHDLDSAAMDAVKRWRFHPAMSGNVPVESQAVVPVQFRL 231
                 799*************************************************************************97 PP

>> TonB_2  TonB C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2      0.54   4.9e+03      55      71 ..     111     129 ..     109     144 .. 0.55
   2 !   25.8   0.0   1.1e-09   9.6e-06      23      78 ..     165     218 ..     150     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.54
      TonB_2  55 DkavkrAie..kasplPpp 71 
                 D+ vk  ++  ka+p+ +p
  CCG93126.1 111 DDMVKAVVQkpKAQPIKKP 129
                 6667777776655554333 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 1.1e-09
      TonB_2  23 sgnleavveitidpdGeivsvrlvksSgneafDkavkrAiekasplPpppekggap 78 
                  ++ ++++ ++i+p G+++s ++ +sSg  ++D+a++ A+++ +  P +   g++p
  CCG93126.1 165 GEQGVVYIWVKISPAGTVSSLSIYRSSGFHDLDSAAMDAVKRWRFHPAMS--GNVP 218
                 566689999********99**********************999999886..5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1665.26
//
Query:       CCG93127.1  [L=920]
Description: Outer membrane receptor protein, mostly Fe transport [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-13   48.8   0.6    1.8e-12   47.8   0.6    1.6  1  Plug      TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.6   9.9e-17   1.8e-12       3     107 ..     147     246 ..     145     247 .. 0.90

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 9.9e-17
                 GCCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGC.SSBGGGEEEEEEEESSCHCTT CS
        Plug   3 kdtpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpianggsgagdls.sidpedierievlkGpasaly 100
                  dtp +v+vvt++++++ +a+s++d+ + +pgvn  ++ +g+  ++ +iRGl     +++++G+ +   +s++ ++   +++++ + ++v++Gp s  y
  CCG93127.1 147 IDTPRTVQVVTRQEMNTINAQSVNDLAAFTPGVNP-TQMTGSPVAEPVIRGL---PATTYRNGMLVG--FSQSAQWGpLMNMNAYDNLDVVTGPVSIVY 239
                 689*******************************8.9999999*********...7999*****874..45555555278******************* PP

                 SSTGSSE CS
        Plug 101 GsdaigG 107
                 G + ++G
  CCG93127.1 240 GPQELAG 246
                 **99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 6044.91
//
Query:       CCG93128.1  [L=750]
Description: Phytoene/squalene synthetase fused to flavin containing amine oxidoreductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-60  203.7   0.0    4.7e-60  203.3   0.0    1.1  1  SQS_PSY        Squalene/phytoene synthase
    1.8e-33  116.5   0.0    2.5e-33  116.1   0.0    1.1  1  Amino_oxidase  Flavin containing amine oxidoreductase
    7.4e-10   38.9   0.1    1.4e-09   38.1   0.1    1.5  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.6e-05   24.5   0.0    2.2e-05   24.0   0.0    1.2  1  FAD_oxidored   FAD dependent oxidoreductase
    2.1e-05   24.3   0.0     0.0001   22.0   0.0    2.0  2  DAO            FAD dependent oxidoreductase
    3.1e-05   24.5   0.1     0.0001   22.8   0.1    1.9  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    6.4e-05   22.3   0.0    0.00013   21.3   0.0    1.4  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00013   21.4   0.0    0.00021   20.6   0.0    1.2  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    0.00092   18.4   0.8     0.0013   17.9   0.8    1.2  1  FAD_binding_2  FAD binding domain
     0.0017   17.1   0.2     0.0038   16.0   0.2    1.5  2  HI0933_like    HI0933-like protein
     0.0037   16.6   0.0      0.006   15.9   0.0    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
     0.0046   16.1   0.1     0.0074   15.4   0.1    1.3  1  GIDA           Glucose inhibited division protein A
  ------ inclusion threshold ------
      0.036   13.3   0.1      0.055   12.7   0.1    1.2  1  FAD_binding_3  FAD binding domain
      0.075   13.0   0.0       0.14   12.2   0.0    1.3  1  DUF2744        Protein of unknown function (DUF2744)
       0.12   11.6   0.1       0.22   10.7   0.1    1.3  1  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> SQS_PSY  Squalene/phytoene synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.3   0.0     4e-63   4.7e-60       3     261 ..      13     264 ..      11     266 .. 0.94

  Alignments for each domain:
  == domain 1  score: 203.3 bits;  conditional E-value: 4e-63
                 HH-HHHHHHHTTS-HHHHHHHHHHHHHHHHHT-.-----.........------------..---------THHHHHHHHHHHT--HHHHHHHHHHTS- CS
     SQS_PSY   3 aasksfylaslllppelRdalgalYafcreaddlvDdvs.eplqararldwwrdavdavyaedklkpprepvlralaqlirtyklpkellleliegmea 100
                 ++ ++ +l++  lp+e+R a++++Yafcr++dd++D++  +p+++++   +w+++v+++y   +   p  p+ ++l q++++ +l++e+l+e+i g+e+
  CCG93128.1  13 KSKSNLALSFFCLPKEQRWAMTVFYAFCRVIDDIADSTVlSPHEKKEGILFWKKEVEKIY---Y-SVPSSPLGKELSQVVHKWNLSQEMLQEIILGVEM 107
                 66788999****************************99989*******************...2.57889***************************** PP

                 -SS-..--SHHHHHHHHHHHHHHHHHHHHHHH-S.S-HHHHHHHHHHHHHHHHHHHHHT---SHHHHTT..S-HHHHHHHT--HHHHHHT-.-SHHHHH CS
     SQS_PSY 101 dleftryetlddLeeYcyrvagvVgelclrllgarrsdralaeaarrlGkalQltnilRdvpeDaergrvyLPadvlkefgvseedllrkgvrsaelra 199
                 d+e++ry ++d+L  Ycyrvag+Vg+++++++g r + +   ++a +lG+a+QltnilRdvp+D   gr+y P d l+ +g++ee++l+ +  s+++r+
  CCG93128.1 108 DIEKRRYKNFDELSLYCYRVAGAVGLVSIEIFGCRHALS--KDYALALGTAFQLTNILRDVPKDSSFGRIYFPLDELEIHGITEEEILSLR-WSPKIRD 203
                 **********************************65554..9*********************************************9887.9999*** PP

                 HHHHHHHHHHHHHHHHHHTGGGS.-HHHHHHHHHHHHHHHHHHHHHHHTTT-TTT------H CS
     SQS_PSY 200 llrrlaerArelldearellkqlpdrrarpalllavalyrailerieaadydvlsrrvklsl 261
                   r +  rA+++++++ +l++ l d++  +a  ++ ++y aile+i+ +++dv+++ ++l++
  CCG93128.1 204 FFRLQYFRAKHYFAKSSKLIHPL-DKPKLLAAEIMSSVYKAILEKIKTKQFDVFHHSIRLNK 264
                 ***********************.77777778********************9887777765 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.0   2.1e-36   2.5e-33       1     449 [.     301     728 ..     301     730 .. 0.84

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 2.1e-36
                    HHHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEET..TEEEESS--EEETTTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECC..TTEECH CS
  Amino_oxidase   1 laGLaaArqLlsaGfdVtvlEardrvGGRirtvrsd..GylielGamwftgagnpllellkelgledslslpdpgapkrvlskggref..pgdlsp 92 
                    ++G +aA +L s G++V++lE+++ +GGR+ ++  +   ++i++G +++ g+++++le+++++g++++l + dp  +  + s++g  +   g+l+ 
     CCG93128.1 301 FSGVSAALELISLGHEVILLESKSKLGGRAGSFLEPqtKQIIDTGQHIMMGCYHHTLEFVEKIGISSKLLWIDPL-KLSFASEKGSSVlsAGNLPA 395
                    69**********************************988**********************************99.55555556666569999999 PP

                    HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTTTTCBHHHH CS
  Amino_oxidase  93 vpaewealleqgalsaellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdpselsakla 188
                      +++ all+      ++ls+ + l++ + +l    l+e++ +++s +++l+    r    v++ + l ep       ++ ++++  ++++sa l 
     CCG93128.1 396 PFHLLVALLR-----YSELSVSDWLKAFFFLLS-IILREKPFEEESVSDWLR----RKKQSVALIRSLWEP-------LCVAALNLSIEKASAELF 474
                    9999******.....88999************9.777777777777777743....333344778999999.......999999999988888887 PP

                    TCCCCHH...HHHTSCCCEETTHTHHHHHHHHH...TTTTEEEETSEEEEEEEEETTC.EEEEETTSTEE...EESEEEE-S-HHHHHSSEEESCC CS
  Amino_oxidase 189 lpllwel...egfggslllprgGlsqlpealae...elrgldirlntrVkeikregdg.vtvtledgevv...eaDaVvvTvplgvlkailfsPpl 274
                    +  l ++   + ++ sl++ r Gls+l  +  e    + g+++ ++t V +++ e++   +++++dg+++   ++D+ ++++p   l       +l
     CCG93128.1 475 YSVLKKTilgKRKDLSLIFSRVGLSELFSNEFErviNACGGKLFFRTSVCSLEFEENYlKSIKTVDGKEFasdSVDYFLSALPWHILG------SL 564
                    76555442114444555555***99996555555999*****************6666699***************************......77 PP

                    .SH..HHHHHHHHSEEEEEEEEEEEESSGGSGCSTS...ECE...CECCCEEETTTEEEEECCECCCSTTTEEEEEEEEECHHHHHHHTTS-HHHH CS
  Amino_oxidase 275 .pd..ekaeairnlgfgsvnkvilefdrkfwednal...gqg...vlvseltttlgeafissdfpsrappgkglvllvyvggdaaneleslsdeel 361
                     p+    ++  ++++  ++  +++++dr+f ++      + +   +l+s+++ + +e  ++   p++         ++ +++   n   sl  +e+
     CCG93128.1 565 lPKesSLRKNCESIEQSPILSLYFWVDRPFTDQPVIgflD-SpvqWLFSRNLIMDKELLSF---PFY-------SYVAVISAPPKNI-LSLNSKEV 648
                    77666899999999****************6665544431.15679999999999997777...555.......4678888777777.599***** PP

                    HHHHHHHHHHHHTGTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHH CS
  Amino_oxidase 362 vqavlrdLrklfgeevpepkatlvtrWhtdplargsysyvsvgpghedydplakpegdprlffAGehtsreypgtvegAilSGlraAa 449
                     + +++++ +l +       + + ++   + l+++  +++++ p ++ y+p+ ++   +++++AG++t +++p+t+egA+lSG +aA+
     CCG93128.1 649 EKIIWKEVNRLIP-------RSIESKLCGSFLFKSLGATPKFDPTSLKYRPPVQT-EWKNFVIAGDWTNTGLPATIEGAVLSGTKAAQ 728
                    *************.......56666666666666666778***************.*******************************8 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.1   1.2e-12   1.4e-09       1      67 [.     296     362 ..     296     363 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 1.2e-12
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETT..CEECTS---EEETTHHHHCHHHHCC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpg..vrvdygahifhgsgyypnvrrllre 67 
                    I+G+G+sG +aA +L   g++v lle+ ++lGGra s+  p+  +++d+g hi++g+  y+++ +++++
     CCG93128.1 296 ILGGGFSGVSAALELISLGHEVILLESKSKLGGRAGSFLEPQtkQIIDTGQHIMMGC--YHHTLEFVEK 362
                    89************************************886667************7..9999999876 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.9e-08   2.2e-05       2      40 ..     294     332 ..     293     368 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.9e-08
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllts 40 
                   vv+ GGg +Gv AA+     G +v+L+e +  lGG + s
    CCG93128.1 294 VVILGGGFSGVSAALELISLGHEVILLESKSKLGGRAGS 332
                   9**********************************8766 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   8.6e-08    0.0001       1      46 [.     293     336 ..     293     404 .. 0.88
   2 ?   -0.5   0.0       0.6   7.1e+02     280     335 ..     643     708 ..     502     715 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 8.6e-08
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEES CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhs 46 
                 +vvi GGG  G+s+A+eL   g  V+lle+++ +g    gr++ +l +
  CCG93128.1 293 KVVILGGGFSGVSAALELISLGheVILLESKSKLG----GRAGSFLEP 336
                 59****************988889*******9999....666666655 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.6
                 CSHHHHHH.HHHHHHHHSGG...G...CGEEEEEEEEEEETTS.....SEEEEEEE....TEEEEEEEEECT CS
         DAO 280 vdeedide.llealrklfPq...l...gdvlrkwaGlrplpdg.....lpligetp....gvkglylatGhs 335
                  +++++++ +++++++l+P+       g++l k  G +p+ d             p    ++k++++a  + 
  CCG93128.1 643 LNSKEVEKiIWKEVNRLIPRsieSklcGSFLFKSLGATPKFDPtslkyR------PpvqtEWKNFVIAGDWT 708
                 4455555558888888888833202344444455555554222122232......13334477777776655 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   8.6e-08    0.0001       1      35 [.     293     327 ..     293     344 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 8.6e-08
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35 
                 kvv++GgG++g+ +A +l  lg++V ++e ++kl 
  CCG93128.1 293 KVVILGGGFSGVSAALELISLGHEVILLESKSKLG 327
                 79******************************998 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.1e-07   0.00013     142     178 ..     287     327 ..     250     357 .. 0.78
   2 ?   -3.8   0.0       4.8   5.8e+03      57      98 ..     493     544 ..     470     549 .. 0.54

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.1e-07
                  T....SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  x....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 142 p....krivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  p    k++v+ GgG+ Gv  A +l +lg+ev l+e  ++l 
   CCG93128.1 287 PsgppKKVVILGGGFSGVSAALELISLGHEVILLESKSKLG 327
                  14445899999999999999999999999999999888887 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.8
                  H..............HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEE CS
                  x..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  57 s..............evvkklnqgielllgeevvkidpgkkkvklekkkegdeeki 98 
                                 +v++  + ++ +++   v ++++++  +k  k+++g+e  +
   CCG93128.1 493 FsrvglselfsnefeRVINACGGKLFFRTS--VCSLEFEENYLKSIKTVDGKE--F 544
                  455555544444444444444555555555..777777777777766665543..3 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.8e-07   0.00021     165     223 ..     292     347 ..     278     366 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.8e-07
  Pyr_redox_3 165 qkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvk 223
                  +kvv+ Gg+ S+v aAlel++ g+eV ++ ++s++  +       l+p +++ ++++++
   CCG93128.1 292 KKVVILGGGFSGVSAALELISLGHEVILLESKSKLGGR---AGSFLEPQTKQIIDTGQH 347
                  79*******************************98887...477899****99998764 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.8   1.1e-06    0.0013       2      37 ..     294     329 ..     293     333 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37 
                    v++ G+G++G +AAle+   G++v+++e +++ gg 
     CCG93128.1 294 VVILGGGFSGVSAALELISLGHEVILLESKSKLGGR 329
                    9****************************9999884 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   3.2e-06    0.0038       2      36 ..     293     327 ..     292     330 .. 0.95
   2 ?   -3.9   0.0       3.4   4.1e+03     117     157 ..     508     548 ..     501     549 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.2e-06
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36 
                  +v+++GgG +G+ aA+++ + g++V+lle+++klg
   CCG93128.1 293 KVVILGGGFSGVSAALELISLGHEVILLESKSKLG 327
                  89******************************998 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.4
                  HHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESE CS
  HI0933_like 117 kelkeagvklrletevksvekeedgkfrvktkseeeleadk 157
                  + +++ g kl  +t+v s+e ee+   ++kt +++e+++d+
   CCG93128.1 508 RVINACGGKLFFRTSVCSLEFEENYLKSIKTVDGKEFASDS 548
                  56788899999999999999999999999998888888776 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     5e-06     0.006      21      62 ..     284     325 ..     265     349 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5e-06
                  CEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH CS
  AlaDh_PNT_C  21 GgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrpa 62 
                  +++p   p kv+++GgG  G++A+    +lg +V +l+ +++
   CCG93128.1 284 STLPSGPPKKVVILGGGFSGVSAALELISLGHEVILLESKSK 325
                  344445579**************************9998765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   6.2e-06    0.0074       1      32 [.     293     324 ..     293     353 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.2e-06
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-G CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkl 32 
                 +v+++GgG +G+ AAl++  lG++v+L+  k 
  CCG93128.1 293 KVVILGGGFSGVSAALELISLGHEVILLESKS 324
                 69*************************94433 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   4.6e-05     0.055       3      35 ..     293     325 ..     292     344 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.6e-05
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrst 35 
                    +V+I G+G +G+++al+L + G +v+l+e  s+
     CCG93128.1 293 KVVILGGGFSGVSAALELISLGHEVILLESKSK 325
                    69***************************8775 PP

>> DUF2744  Protein of unknown function (DUF2744)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011      0.14      47      84 ..     674     711 ..     661     720 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
     DUF2744  47 lwecGvrp.vdPereikyqkPergersalnaagsWvsiD 84 
                    +G+ p  dP+  +ky++P ++e ++++ ag+W    
  CCG93128.1 674 FKSLGATPkFDPTS-LKYRPPVQTEWKNFVIAGDWTNTG 711
                 5678999989**99.********************8765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00019      0.22      19      57 ..     293     330 ..     291     338 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00019
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvailersvspGGGa 57 
                  vvi G+G sG++aa  l    + +v++le++  +GG a
  CCG93128.1 293 KVVILGGGFSGVSAALELISL-GHEVILLESKSKLGGRA 330
                 59****************999.9*********9999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 4740.68
//
Query:       CCG93129.1  [L=325]
Description: Deoxyhypusine synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-38  131.2   0.0    5.5e-38  130.9   0.0    1.0  1  DS        Deoxyhypusine synthase
  ------ inclusion threshold ------
      0.091   11.6   0.0       0.13   11.1   0.0    1.1  1  MreB_Mbl  MreB/Mbl protein


Domain annotation for each model (and alignments):
>> DS  Deoxyhypusine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.0   6.1e-42   5.5e-38      11     287 ..      17     321 ..      11     322 .. 0.85

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 6.1e-42
          DS  11 fqatslgeaidilnkmrkdekctiflgltsnlissGlreiiadlvkeklvdvivtTaggieeDlikalgkktylg......dfelddeeLrekginRig 103
                 f+a+sl+ea++ + +   +   +++++l +++ ++ l   +a+++++  v +i  T++++eeD+++ +++++y+           ++ +L+ek++nR+ 
  CCG93129.1  17 FNAASLKEAAKGYVRHI-ELGGKMMIALGGAMSTAELGISLAEMIRQDKVHAISCTGANLEEDIFNLVAHNYYQMiphyreLSADEEVALYEKHLNRVT 114
                 99*********999995.5677999*********************************************9999444443233445568********** PP

          DS 104 nllvpneny.ckfedwvreildkleeeqkvwspselikelG........keindeeSilywAykndipvfcpaltDgslGdqlllfhsv....k..ekk 187
                 ++++p+e+  +++e+++ +   + +++++++ p+e+i+++          +i+ ++S + +A++++    +p++ D+ lG  + ++h      k  ++ 
  CCG93129.1 115 DTCIPEEEAmRRIERVILDEWIEADKQKQRFFPHEFIWKILksgklkpfYQIDPKDSWVLAAMEKNLFMVVPGWEDSTLGN-MYAAHCLqghiKdpMTI 212
                 *****998779******99999999888899********984555555556669***************************.88887434444312333 PP

          DS 188 klkldivkDirelndialkakktgaiilGGGvpKhhilnanlm.......rn..gadyavyittaqefdGslsgatldEavSwgkikaeaksvkvyaDa 277
                 k  ++ + ++ ++   + k+++ g++ +GGG++ ++ + ++ m       rn     y  +i+ a+   Gs sga+++E ++wgk+ +++ +  + +Da
  CCG93129.1 213 KSGIEYMMELAQYYLQTTKNHSLGLFQIGGGISGDFPICVVPMlhqdmqlRNipLWGYFCQISDATTSYGSYSGASPNEKITWGKLGKDTPKFVIESDA 311
                 445677777777777788899***************999998889999994433678****************************************** PP

          DS 278 TivlPLlvaa 287
                 Tiv PLl+++
  CCG93129.1 312 TIVAPLLFSY 321
                 *******875 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.4e-05      0.13     145     200 ..      36      95 ..      22     118 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.4e-05
                 S-EEEEEE-SS-EEEEE.EETTEEEEEE...EES-SHHHHHHHHHHHHHHHHSEE--HHH CS
    MreB_Mbl 145 sgnmvvdiGggttevav.islggivtsk...svrvaGdeldeaiikyirkkynlliGert 200
                  g+m++ +Gg  +   + isl++++ ++   ++  +G +l+e+i +++ ++y  +i++  
  CCG93129.1  36 GGKMMIALGGAMSTAELgISLAEMIRQDkvhAISCTGANLEEDIFNLVAHNYYQMIPHYR 95 
                 699******9755444448*****987511156789*****************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2260.13
//
Query:       CCG93130.1  [L=702]
Description: K(+)-insensitive pyrophosphate-energized proton pump [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.3e-249  830.2  36.2   1.6e-249  830.0  36.2    1.0  1  H_PPase     Inorganic H+ pyrophosphatase


Domain annotation for each model (and alignments):
>> H_PPase  Inorganic H+ pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  830.0  36.2  8.8e-254  1.6e-249       1     650 []      37     692 ..      37     692 .. 0.97

  Alignments for each domain:
  == domain 1  score: 830.0 bits;  conditional E-value: 8.8e-254
                 HHHHHHHHHHHHHHHTS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     H_PPase   1 vlallfalvllkkvlkedegtekmkeiaeaikegaeaflkrqykviailvvvlavlllllallsvltaiaflvGallSalagyigmkvavranvrtaka 99 
                 ++++l+a++l+ ++++ d+g+++m+ ia ai+ega+a+l+rq  +i+ +++vl++l+ l  + +++ta  fl+G+++S+lag+igm+vav+anvrta+a
  CCG93130.1  37 LIGILVAIILAFRIRSLDSGNDRMRMIAGAIEEGAKAYLNRQLVTILGIAAVLFLLIGL--FKNWWTASGFLLGSFCSYLAGLIGMRVAVQANVRTAQA 133
                 5899*****************************************************99..789*********************************** PP

                 HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-EE-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCHHHHTS---TT-TT-T CS
     H_PPase 100 arkslkkalkvafrsGavmgllvvglallgvsllllllkaaalelekllellvgfglGaslvalfarvgGGiytKaADvGaDLvGKveagipEDdprnp 198
                 a++s +kal+v+f +G+v+gllvvglal+ v l+++l  +  + ++++ + lvg++lGasl+++far+gGGiytKaADvGaDL GK+e++++EDdprnp
  CCG93130.1 134 ATQSKDKALHVSFLGGSVTGLLVVGLALFSVGLFYALSLH-YQGVSETSSSLVGLALGASLISVFARLGGGIYTKAADVGADLTGKIEQNLNEDDPRNP 231
                 ********************************99999888.999******************************************************* PP

                 THHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH......SHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHSS--HHHHHHHHHHHHHHHHHH CS
     H_PPase 199 aviADnvGDnvGDvaGmgADlfesyvasivaamvlg.....aavklvllpllvaavgilasiigillvktkedasskkkeellkaLkkgllvsavlsvv 292
                 a+iADnvGDnvGD+aGm+AD+fe+yv+s+++a++++        ++ ++p+lv +v+il ++ gi++v+++       k+ + kaL +g++v  v+s +
  CCG93130.1 232 ATIADNVGDNVGDCAGMAADVFETYVVSLIGAVLVAvvvlgGDPAATAYPFLVGMVTILGALSGIFYVSIS-------KAPPAKALLNGVMVNGVVSSA 323
                 ********************************99997665448999**********************443.......346899*************** PP

                 HHHHHHH-S-TTTTSHHHHHHHHHHHHHHHHHHHHHHHH-TTSHHHHHHHHHGGG-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     H_PPase 293 lvallslllkeaaalklflavlvGlvagllivllteyytsteykpvkeiaeasetGaatniisGlavgmestvlpvlviavaillsyllaglygialaa 391
                 l++ ls++l   ++l++f++ +vG++++++i l+t+yyt+t+ kpv+ ia+as+tG+atnii+Gla+gme+t+lpvl+i +a++l+y+l+glyg+a+a 
  CCG93130.1 324 LFLPLSYYLFPSNWLNIFACSVVGVLMTAAIFLITDYYTATTRKPVQIIAHASQTGHATNIIAGLATGMEATALPVLFIGAAVMLTYWLGGLYGVAIAV 422
                 *******998899************************************************************************************** PP

                 HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.........HHCS--BTTSHHHH CS
     H_PPase 392 vgmLstlgitlavdayGPiaDNAggiaemseleeevreitdklDavGNttkAitKgfaigsAalaalaLfaaylee.........aklekvdllnpevl 481
                   mLs++gi++++da+GPi+DNAggi+ems+l+++vr+itd+lDavGNt+kA+tKg+aigsA+laal+Lf +y+ee         a+  +++l++p+v+
  CCG93130.1 423 RCMLSMAGIVISLDAFGPITDNAGGIVEMSQLPKSVRQITDELDAVGNTMKAVTKGYAIGSAGLAALVLFGSYVEElkhfssatiAQELQFKLQDPKVI 521
                 **********************************************************************************99977899********* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSS---HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHH CS
     H_PPase 482 vglliGamlvflfsaltmkaVgkaAeevveevrrqfkeipgilegkekpdykkcveistkaalkemilpgllavlapivvgll..lgaealagllagal 578
                 +gl+iG++l++lf+a +m+aVg+aA +vv+evrrq++eipgil+g ++p+y +cv+i+tkaalkemi+p++l +la + ++++  lg+ +l+g l+g++
  CCG93130.1 522 IGLFIGGLLPYLFAARSMSAVGRAAGSVVQEVRRQIREIPGILKGVDRPQYGRCVDIVTKAALKEMIFPAILPLLAVLGIAIVpgLGPVVLGGALIGTI 620
                 **************************************************************************99988888755799*********** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHTTSTT.SSSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH CS
     H_PPase 579 vsgvllAifmanaGgawDNAKkyiEegelggkgseahkaaVvGDtVGDPfKDtagpslniliklmsivslvi 650
                 v+g+++Ai+m+++G+awDNAKk+iEeg++ggkgseah+aaV+GDtVGDP+KDtagp++n++ik++++++++i
  CCG93130.1 621 VTGLFVAISMTSGGAAWDNAKKWIEEGNFGGKGSEAHAAAVTGDTVGDPYKDTAGPAINPMIKVVNVLAILI 692
                 ********************************************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 4519.81
//
Query:       CCG93131.1  [L=474]
Description: NADH-quinone oxidoreductase subunit N [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-69  232.5  22.5    1.3e-68  231.3  22.5    1.6  1  Proton_antipo_M  Proton-conducting membrane transporter
  ------ inclusion threshold ------
      0.066   12.9   0.4        2.3    7.9   0.1    2.4  2  DUF4564          Domain of unknown function (DUF4564)
       0.33   10.6   2.1       0.53    9.9   2.1    1.3  1  GET2             GET complex subunit GET2


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.3  22.5   2.2e-72   1.3e-68       3     287 ..     122     410 ..     120     415 .. 0.95

  Alignments for each domain:
  == domain 1  score: 231.3 bits;  conditional E-value: 2.2e-72
  Proton_antipo_M   3 dLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskalelglnslelllllllllvgllvKs 96 
                      d +ll++glE+v +++y+L+++ k+ p++leA++k++++++l+s++L++gi+ ++++tg+++f+e++++++++  s  l+l+l+++lvgl +K+
       CCG93131.1 122 DFILLFVGLEIVTVSFYVLVAFQKEFPSALEAGVKYLVIGALASSFLVMGIAFVFGITGSTQFDEVARFAQNNPVSAPLVLGLIFVLVGLGFKA 215
                      889******************************************************************************************* PP

  Proton_antipo_M  97 aqvplhlWlpdayveaPtpvsallAatlvkagvlllirllllla....vssneisqlllilaiismllgslvalaqtdiKrllAySsishlGym 186
                      ++vp+h+W+pd+y++a+tp++  l a+ +ka++++++ ++l l      +++ +  l++++a++s++lg+l+a+ q++iKr+l+ySsish G++
       CCG93131.1 216 SAVPFHVWTPDVYQGASTPITSYL-AVGSKAAGFVVLLRVLNLPfydqSFQKHWIPLIVLMALLSVILGNLAAIPQRNIKRMLGYSSISHGGFL 308
                      ************************.99999999988777665553457788899999************************************* PP

  Proton_antipo_M 187 lialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLeaavavsl 280
                      l++l++++ +g++a+i +++++ +  ++ Fl++  +++++ +  +i++ +gL+ k+ +la+ ++++++slaGlPp+ gF++k++++ aa++ ++
       CCG93131.1 309 LMGLSAHNTIGCAAVIYYFFAYLVAIFAAFLVVILLEKNQPSGVSIKDFNGLYHKNGLLAWSMAFAMISLAGLPPLMGFFGKLMVFLAAWESGQ 402
                      ************************************99999***************************************************** PP

  Proton_antipo_M 281 illvla.v 287
                       llv++  
       CCG93131.1 403 HLLVIIgA 410
                      **999842 PP

>> DUF4564  Domain of unknown function (DUF4564)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1   0.00038       2.3      39      64 ..      65      92 ..      58     100 .. 0.83
   2 ?    2.4   0.0     0.018   1.1e+02      14      36 ..     360     383 ..     355     391 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00038
     DUF4564 39 yssDsl..lwklvyvigcllvalqnlee 64
                y  D++  lwk++++i+ +lv+ ++le 
  CCG93131.1 65 YVWDKMavLWKVFFLITGFLVTYLSLES 92
                556666669*************999986 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.018
     DUF4564  14 Lkrspgirswsllvg.iasvGlaa 36 
                 L +++g+  ws++++ i+  Gl +
  CCG93131.1 360 LYHKNGLLAWSMAFAmISLAGLPP 383
                 7899********997255567766 PP

>> GET2  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.1   8.9e-05      0.53     193     242 ..      77     142 ..      65     174 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 8.9e-05
        GET2 193 llll..lnfvYhvfrssks..............alvralteasvrnFftvFltfEvvllsiyylll 242
                 ++l+  ++++Y+ ++s++               +   +   asvr F+ +F+ +E+v +s y+l+ 
  CCG93131.1  77 FFLItgFLVTYLSLESNSLitkgraefytlpllTTAGMALLASVRDFILLFVGLEIVTVSFYVLVA 142
                 333311444555555555566677778888776333333344478*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3147.74
//
Query:       CCG93132.1  [L=488]
Description: NADH dehydrogenase subunit M [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-53  179.8  21.7    6.7e-53  179.8  21.7    1.6  2  Proton_antipo_M  Proton-conducting membrane transporter


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.8  21.7   3.7e-57   6.7e-53       1     293 []     125     421 ..     125     421 .. 0.94
   2 ?   -3.5   0.0      0.26   4.6e+03     229     257 ..     441     469 ..     436     474 .. 0.64

  Alignments for each domain:
  == domain 1  score: 179.8 bits;  conditional E-value: 3.7e-57
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltg....tlefeelskal.elglnslelllllllll 89 
                      + dL+ +y++ E  l+p++lLig+w+++ ++   sl ++l+ ++gsl+LL+gil+l+ l      t +++ l+ ++    l  ++  + + +ll
       CCG93132.1 125 SLDLFFFYIFHEFALIPTFLLIGIWGSE-NRQFVSLQITLYLMVGSLVLLVGILALLVLLPqearTFDIPMLIDYAkAHPLPINKEAVPFAFLL 217
                      679**********************887.888899******************9777665555679999999999954445556677789999* PP

  Proton_antipo_M  90 vgllvKsaqvplhlWlpdayveaPtpvsallAatlvkagvlllirllllla.vssneisqlllilaiismllgslvalaqtdiKrllAySsish 182
                      vg+ + ++++p+ +W p  y  aPtp  +l A++l k g+++l+r+  +l     + ++++l+il +  +l+ + v+++q ++  +l+ySs+ h
       CCG93132.1 218 VGFGTLVSLFPFYTWAPAGYAVAPTPAAMLHAGVLKKFGLYGLLRVAIPLLpGGLEHWKSWLYILLLGNILYIGYVTIVQKELTTMLGYSSVMH 311
                      *********************************************9988887999*************************************** PP

  Proton_antipo_M 183 lGymlialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLeaav 276
                      +Gy++++la  +++g++++++++++h+l+ allF+lag + ++r+ + ++ ++ggL ++mP+++++++++ ++  G+P++a+F +++li+ +++
       CCG93132.1 312 MGYIFLGLASWNKIGISGVVVLMVAHGLSIALLFALAGEI-KDRTGEIKFSELGGLGQRMPFISVAFVLASFASIGVPGLANFTGELLIFFGSW 404
                      *************************************998.8899************************************************* PP

  Proton_antipo_M 277 avslillvlavvasvlt 293
                      ++++++ +la+ ++v++
       CCG93132.1 405 QAQPWITALAIWGIVIS 421
                      ********999888875 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.26
  Proton_antipo_M 229 trdirayggLakkmPilalvllvlllsla 257
                       +d+++++g akk P l l+  +l+++++
       CCG93132.1 441 LKDVEDLQGVAKKFPYLLLMASLLIIGMM 469
                      56666677777777766666655555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3528.44
//
Query:       CCG93133.1  [L=601]
Description: NADH dehydrogenase subunit L [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-89  300.5  23.1    1.2e-89  300.5  23.1    2.2  3  Proton_antipo_M  Proton-conducting membrane transporter
    7.2e-22   77.2   1.5    7.2e-22   77.2   1.5    3.2  3  Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), 
    0.00022   20.8   1.2    0.00022   20.8   1.2    4.3  5  NADH5_C          NADH dehydrogenase subunit 5 C-terminus
  ------ inclusion threshold ------
      0.022   14.9   0.1      0.022   14.9   0.1    4.5  4  DHHC             DHHC palmitoyltransferase
       0.13   11.9   1.0       0.44   10.1   0.2    2.1  2  Proton_antipo_C  NADH-dehyrogenase subunit F, TMs, (complex I


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   1.9         4   1.4e+04     127     159 ..      17      46 ..       4      56 .. 0.39
   2 !  300.5  23.1   3.2e-93   1.2e-89       1     293 []     130     416 ..     130     416 .. 0.97
   3 ?   -2.4   0.7       0.6   2.2e+03     110     160 ..     447     497 ..     441     505 .. 0.57

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 4
  Proton_antipo_M 127 agvlllirlllllavssneisqlllila.iisml 159
                      ++++++ ++l ++     ++sq++ + a +is l
       CCG93133.1  17 LSAFMIWAFLKPFP----FLSQIVSVGAcAISFL 46 
                      33333333333333....3333332222122333 PP

  == domain 2  score: 300.5 bits;  conditional E-value: 3.2e-93
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefe.elskalelglnslelllllllllvgll 93 
                      a++ +++y+++Elv++++ylLig+w++kp++++A+ k+fl +++g++ +Llgi++++++tg+l f+  ls++    ++ + ++++ lll+ g +
       CCG93133.1 130 ATNFIMMYIFWELVGVSSYLLIGFWFEKPSAASAATKAFLANRIGDFGFLLGIIMFWTFTGSLMFDpSLSSY---FKGHPLVTIMGLLLFCGCV 220
                      7899*************************************************************8356777...999**************** PP

  Proton_antipo_M  94 vKsaqvplhlWlpdayveaPtpvsall.AatlvkagvlllirlllllavssneisqlllilaiismllgslvalaqtdiKrllAySsishlGym 186
                       Ksaq+plh+Wlpda +e+Ptpvsal+ Aat+v+agv++l+r++++l+  s+++  ++++ + i++l+++l a +q diKr+lAyS++s+lGym
       CCG93133.1 221 GKSAQIPLHVWLPDA-MEGPTPVSALIhAATMVAAGVYMLCRIFFVLE-QSEQALEVIAWTGGITALVAALTATQQDDIKRILAYSTMSQLGYM 312
                      ***************.********************************.99******************************************* PP

  Proton_antipo_M 187 lialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLeaavavsl 280
                      ++a++     +  aa++hl tha+fkallFl ags+ +  ++++di ++ggL+kkmP++++++l+++ +laG+P+++gF+sk++iLe++ + + 
       CCG93133.1 313 VMAVGS---SATIAAMFHLCTHAFFKALLFLGAGSILHVLHHEQDIWKMGGLWKKMPVTFVTFLIGTCALAGIPGFSGFFSKDTILEMVGEKNK 403
                      *****9...6678********************************************************************************* PP

  Proton_antipo_M 281 illvlavvasvlt 293
                      +l++l +++++lt
       CCG93133.1 404 MLFWLGLFTAGLT 416
                      ****999998886 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.6
  Proton_antipo_M 110 veaPtpvsallAatlvkagvlllirllllla.vssneisqlllilaiismll 160
                      ++ P+ v  ++ a++   +v ++ + l   +  +s++++  ++il+++  l 
       CCG93133.1 447 MGLPMIVLSFF-ALVGGYSVVGIEKALGTAHeAMSEAAKLNVMILSVLVGLT 497
                      56666666666.5555555555555555555555666666666666555444 PP

>> Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   1.5     2e-25   7.2e-22       2      58 .]      62     118 ..      61     131 .. 0.97
   2 ?   -2.7   0.2       1.8   6.5e+03      29      36 ..     367     374 ..     365     376 .. 0.86
   3 ?   -2.1   0.2       1.2   4.3e+03      16      32 ..     410     429 ..     402     431 .. 0.54

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 2e-25
  Proton_antipo_N   2 ftWlsvgglsieigfllDklsalmllvvtfvsllvhlYSigYMaddegyqRFfayls 58 
                      ++W+++ggl+i++g+ +D+ls +mllvvt+v+l++h+YS+gYM +d+g++RFfa ls
       CCG93133.1  62 INWIDIGGLTIQLGMVFDSLSKVMLLVVTGVGLMIHIYSMGYMGEDPGRSRFFAELS 118
                      58***************************************************9876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
  Proton_antipo_N  29 vtfvsllv 36 
                      vtfv++l+
       CCG93133.1 367 VTFVTFLI 374
                      99***998 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.2
  Proton_antipo_N  16 fllDklsalml...lvvtfv 32 
                      ++  +l+a ++   +vvtf+
       CCG93133.1 410 LFTAGLTAFYMtrlFVVTFL 429
                      55556666555111555555 PP

>> NADH5_C  NADH dehydrogenase subunit 5 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   6.6       1.3   4.5e+03      58     102 ..      76     121 ..      43     142 .. 0.65
   2 ?   -1.2   1.1      0.36   1.3e+03      64     107 ..     115     155 ..     110     170 .. 0.70
   3 ?   -3.6   1.0       1.9   6.9e+03      99     115 ..     186     202 ..     178     216 .. 0.58
   4 ?    0.4   0.1      0.12   4.3e+02      73     114 ..     278     318 ..     272     332 .. 0.76
   5 !   20.8   1.2   6.3e-08   0.00022       1     175 [.     419     591 ..     419     598 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.3
     NADH5_C  58 itlplllKllallvtilGlllglelsklslkllkkslkl.nlssfs 102
                 +++  l K++ l+vt +Gl++ +  +    + +  s  + +ls f+
  CCG93133.1  76 MVFDSLSKVMLLVVTGVGLMIHIYSMGYMGEDPGRSRFFaELSLFM 121
                 77888999********999998776665555444443333333333 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.36
     NADH5_C  64 lKllallvtilGlllglelsklslkllkkslklnlssfssslwF 107
                 + l+ +++++lG++++ ++ ++ + +        +s+ +  +wF
  CCG93133.1 115 AELSLFMLSMLGIVVATNFIMMYIFWELVG---VSSYLLIGFWF 155
                 556778888999999988888877665533...45566666666 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 1.9
     NADH5_C  99 ssfssslwFlpslshrl 115
                  +f++sl F psls+++
  CCG93133.1 186 WTFTGSLMFDPSLSSYF 202
                 45556666666665554 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.12
     NADH5_C  73 ilGlllglelsklslkllkkslklnlssfssslwFlpslshr 114
                  +G +++l  + +++++   +     +s +s+l+++ + +++
  CCG93133.1 278 WTGGITALVAALTATQQDDIKRI-LAYSTMSQLGYMVMAVGS 318
                 57888888888888888777765.788888888888877665 PP

  == domain 5  score: 20.8 bits;  conditional E-value: 6.3e-08
     NADH5_C   1 YSlRliyyvllgsprfsslspineenptllnpilrLalgsiiaGsllswlifp.ktpvitlplllKllallvtilGlllglelsklslkllkkslklnl 98 
                 Y +Rl+++++lg+p+     + +e+ + +  p+++L+++++++G     +     t    ++  +Kl ++++++l  l+g+ +  +++  ++k +   +
  CCG93133.1 419 YMTRLFVVTFLGTPKSEVAEHAHESPSVMGLPMIVLSFFALVGGYSVVGIEKAlGTAHEAMSEAAKLNVMILSVLVGLTGVGIGAFAYWKKQKEI--VI 515
                 889******************************************99988888788888899999998888888888888888888866655554..78 PP

     NADH5_C  99 ssfssslwFlpslshrllsklsLklgqklakqlDqgWlEklgpkglaklllklskliqnlqkglikiyLlsflltll 175
                 +  +    ++ +l    l kl   l  + a  lD+  +   +  g a l++   +l+  +q+g+i++y ++f     
  CCG93133.1 516 FPLFKNKFYFDELYDLTLLKLQQLLAGIFA-WLDEWIIGFGIVRGSAFLVSVGGELLRVFQTGNIRSYAFIFGAGAA 591
                 888888888998888887777666655544.4665444444456667777777788888888888888888766554 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   6.8       3.1   1.1e+04      66     111 ..      98     140 ..       8     151 .. 0.63
   2 ?   -5.0   8.0         5   1.8e+04      62     115 ..     128     194 ..     109     269 .. 0.65
   3 ?   -1.0   2.1      0.48   1.7e+03      69     113 ..     284     328 ..     216     380 .. 0.65
   4 ?   14.9   0.1     6e-06     0.022      42     109 ..     397     461 ..     393     486 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.1
        DHHC  66 lvlllialvklveeekkseflavtllkkllsilllvlsllfllllg 111
                 ++ + ++  +  +++ + e   ++l+   +  ++++  ++++++++
  CCG93133.1  98 IYSMGYMGEDPGRSRFFAE---LSLFMLSMLGIVVATNFIMMYIFW 140
                 2222222222222222221...222222233333333344444444 PP

  == domain 2  score: -5.0 bits;  conditional E-value: 5
        DHHC  62 lilalvlllialvklveeekkseflavtllkk...............llsilllvlsllfllllgllll 115
                 ++ + +++++++++lv  ++   +  ++   k               ++ + +l+  ++f+ ++g+l++
  CCG93133.1 128 VVATNFIMMYIFWELVGVSSYLLIGFWFE--KpsaasaatkaflanrIGDFGFLLGIIMFWTFTGSLMF 194
                 33333333333333333222222222221..11134444444445555555555555566666666655 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.48
        DHHC  69 llialvklveeekkseflavtllkkllsilllvlsllfllllgll 113
                 +l+a ++ +++++ +++la++++++l+ ++++v s   ++ +++l
  CCG93133.1 284 ALVAALTATQQDDIKRILAYSTMSQLGYMVMAVGSSATIAAMFHL 328
                 333333333333333344444444344444444333333333332 PP

  == domain 4  score: 14.9 bits;  conditional E-value: 6e-06
        DHHC  42 ciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkkllsilllvlsllflll 109
                  +Ge+N   F+l l++  l +++++ l++++++ + ++e ++++   +     + + ++vls+++l+ 
  CCG93133.1 397 MVGEKNKMLFWLGLFTAGLTAFYMTRLFVVTFLGTPKSEVAEHAHESPSV---MGLPMIVLSFFALVG 461
                 7**********************************999999988877654...456666666665554 PP

>> Proton_antipo_C  NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00012      0.44      83     116 ..     430     463 ..     393     475 .. 0.77
   2 ?   -0.9   0.0      0.29     1e+03     160     190 ..     489     519 ..     474     547 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00012
  Proton_antipo_C  83 efenkktlsyPhEsdntmlfpllvLvlftlfvGl 116
                       + +++  +  hEs++ m +p++vL +f l+ G 
       CCG93133.1 430 GTPKSEVAEHAHESPSVMGLPMIVLSFFALVGGY 463
                      34455677899******************99874 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.29
  Proton_antipo_C 160 ifSvsialfGifiAsllYkpvysslqnldli 190
                      i+Sv + l G+ i  + Y +  +++  + l+
       CCG93133.1 489 ILSVLVGLTGVGIGAFAYWKKQKEIVIFPLF 519
                      5666677777766666666655555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4410.48
//
Query:       CCG93134.1  [L=101]
Description: NADH-quinone oxidoreductase subunit K [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-23   82.2  10.2      2e-23   82.0  10.2    1.0  1  Oxidored_q2  NADH-ubiquinone/plastoquinone oxidoreductase cha
  ------ inclusion threshold ------
      0.043   13.8   0.9      0.059   13.4   0.9    1.3  1  BMC          BMC domain


Domain annotation for each model (and alignments):
>> Oxidored_q2  NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0  10.2   2.3e-27     2e-23       2     102 ..       8      95 ..       7      99 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 2.3e-27
                  HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHC.............TTSCGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-B CS
  Oxidored_q2   2 lllliallfliGlygvllrrnllkvliglelisnavnlllvlagvftegtlvitnpatefadplpqalvLtaivigaaetavgLallvrlyreygtdd 99 
                  +l+ +++lf+iG+ g++lrr+++ + ++le+++na+nl+lv+++++               ++ +q+lv+++i+++aae+avgLal+v+l+r +++++
   CCG93134.1   8 YLTASGILFAIGIAGIILRRDMIIIYMCLEIMLNAANLALVAFSRYN-------------SNLSGQVLVFFVITVAAAEVAVGLALIVALFRVKHSTK 92 
                  78899*****************************************9.............*********************************99988 PP

                  CCG CS
  Oxidored_q2 100 vqe 102
                   ++
   CCG93134.1  93 AED 95 
                  776 PP

>> BMC  BMC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   6.6e-06     0.059       3      61 ..      22      83 ..      20      97 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.6e-06
                EEEEEESHHHHHHHHHHHHHHSSEEEEEEEECTTT...CEEEEEEESHHHHHHHHHHHHHHH CS
         BMC  3 GlietrglaaaieaaDaalKaAnVelvgvekvggg...kvtviitGdvaaVkaAveagveaa 61
                G+i  r +  +++++  +l aAn  lv +++ ++    +v+v++   vaa + Av  ++ +a
  CCG93134.1 22 GIILRRDMIIIYMCLEIMLNAANLALVAFSRYNSNlsgQVLVFFVITVAAAEVAVGLALIVA 83
                88888899999****************99998886577555555556666666665555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 672.31
//
Query:       CCG93135.1  [L=165]
Description: NADH dehydrogenase subunit J [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-35  120.7  24.0    4.9e-35  120.3  24.0    1.1  1  Oxidored_q3    NADH-ubiquinone/plastoquinone oxidoreductase c
  ------ inclusion threshold ------
      0.023   14.8  12.4      0.023   14.8  12.4    2.4  3  DUF4040        Domain of unknown function (DUF4040)
       0.34   10.7   0.0       0.34   10.7   0.0    1.6  2  DUF4718        Domain of unknown function (DUF4718)


Domain annotation for each model (and alignments):
>> Oxidored_q3  NADH-ubiquinone/plastoquinone oxidoreductase chain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3  24.0   8.3e-39   4.9e-35       2     144 .]      17     159 ..      16     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 8.3e-39
                  HHHHHH-SBHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHIIIIIHHHHHHHHHHHSSTTS----TTCHHHHHHHHHHHHHHHHHHHTT--..... CS
  Oxidored_q3   2 allvitsknpvysalfLilsfvgvaglfillgaeFlallqilvYvGAilvlflFvimllesaeeeepeslsrslalaalligllllallllllles.. 97 
                  +++vi +knpv+sa+ L+l+++++aglf+llga+Fla++q+lvY+GA++vlflF+imll+  + e+  +++   ++++ll++lll + ++l+ +++  
   CCG93135.1  17 GIGVIANKNPVASAMNLVLMIICIAGLFVLLGAYFLAAVQVLVYAGAVMVLFLFIIMLLDL-KAEQLANFRMLGIVGGLLTVLLLGIGFFLA-GKNit 112
                  79********************************************************733.455555666666666566666666665555.54434 PP

                  ...--.------TT-HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHC CS
  Oxidored_q3  98 sssav.daqvadvsnieaigsllftkyllpfelasllLLvaligaivl 144
                  s     +++v ++s+i+a+g+llf++y l+fe++++lLL+ +ig+i+l
   CCG93135.1 113 S-LVGkTDKVIQNSSIKALGELLFGNYALAFEAVGVLLLISMIGVIIL 159
                  2.33248889999*********************************86 PP

>> DUF4040  Domain of unknown function (DUF4040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8  12.4   3.8e-06     0.023       2      64 ..      12      74 ..      11      76 .. 0.95
   2 ?   -0.7   0.5      0.27   1.6e+03      49      59 ..      90     100 ..      82     107 .. 0.63
   3 ?   -2.3   0.6      0.87   5.2e+03      20      26 ..     148     154 ..     139     160 .. 0.50

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.8e-06
     DUF4040  2 llvlaalaavlardrlaavillgvvGllvallfvllgAPDvAlTqaavveglttvllllalrr 64
                +++ + + +++ ++++a+++ l ++ +++a lfvllgA  +A  q++v +g ++vl+l+++  
  CCG93135.1 12 TMIGSGIGVIANKNPVASAMNLVLMIICIAGLFVLLGAYFLAAVQVLVYAGAVMVLFLFIIML 74
                799999****************************************************99865 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.27
     DUF4040  49 vveglttvlll 59 
                 +v gl tvlll
  CCG93135.1  90 IVGGLLTVLLL 100
                 34455555554 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.87
     DUF4040  20 villgvv 26 
                 ++l++++
  CCG93135.1 148 LLLISMI 154
                 2333333 PP

>> DUF4718  Domain of unknown function (DUF4718)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.8      0.95   5.7e+03       7      17 ..      49      59 ..      42      71 .. 0.69
   2 ?   10.7   0.0   5.6e-05      0.34      15      49 ..      98     132 ..      93     139 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.95
     DUF4718  7 tyflaagavsl 17
                +yflaa  v +
  CCG93135.1 49 AYFLAAVQVLV 59
                69999977754 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 5.6e-05
     DUF4718  15 vslGiGffalasalwflickrreifeeskfkeide 49 
                 + lGiGff     +  l+ k  ++ ++s  k+++e
  CCG93135.1  98 LLLGIGFFLAGKNITSLVGKTDKVIQNSSIKALGE 132
                 679*****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1353  (0.0754643); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1142.69
//
Query:       CCG93136.1  [L=172]
Description: NADH-quinone oxidoreductase subunit I [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-13   48.9  11.7    4.2e-09   35.8   2.2    2.2  2  Fer4             4Fe-4S binding domain
    9.2e-11   42.2   6.9    1.4e-10   41.6   6.9    1.3  1  Fer4_7           4Fe-4S dicluster domain
    6.5e-08   32.3  11.8    3.3e-05   23.7   2.1    2.2  2  Fer4_6           4Fe-4S binding domain
    1.6e-07   31.3   6.9    5.8e-07   29.6   7.3    1.6  2  Fer4_9           4Fe-4S dicluster domain
    8.7e-07   28.7  10.0    0.00059   19.8   1.3    2.3  2  Fer4_2           4Fe-4S binding domain
    1.9e-06   28.7  19.8    0.00021   22.2  11.1    2.2  2  Fer4_16          4Fe-4S double cluster binding domain
    4.3e-06   26.7  30.4    0.00012   22.1  11.0    2.0  3  Fer4_21          4Fe-4S dicluster domain
    4.8e-06   26.6  19.1     0.0008   19.5  11.0    2.1  2  Fer4_10          4Fe-4S dicluster domain
    1.6e-05   25.3  17.7     0.0027   18.1   0.3    2.1  3  Fer4_8           4Fe-4S dicluster domain
    6.9e-05   23.3   9.7     0.0021   18.6  10.2    2.1  2  Fer4_17          4Fe-4S dicluster domain
    0.00032   21.0   8.3      0.075   13.6   0.8    2.2  2  Fer4_4           4Fe-4S binding domain
     0.0017   19.1   4.5       0.24   12.3   0.2    2.2  2  Fer4_22          4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.013   16.4   3.4      0.013   16.4   3.4    2.2  2  Fer4_3           4Fe-4S binding domain
      0.021   15.4  11.0       0.12   12.9   2.3    2.5  2  Fer4_13          4Fe-4S single cluster domain of Ferredoxin I
      0.047   13.9   8.1       0.87    9.8   0.7    2.3  2  Fer4_18          4Fe-4S dicluster domain
       0.97    9.7   4.2        5.4    7.3   0.3    2.2  2  c-SKI_SMAD_bind  c-SKI Smad4 binding domain
        1.1    9.5   4.3        4.4    7.5   0.1    2.2  2  ETF_QO           Electron transfer flavoprotein-ubiquinone ox
        3.6    7.8  10.2        4.4    7.5   1.0    2.6  3  SCRG1            Scrapie-responsive protein 1


Domain annotation for each model (and alignments):
>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   2.2   1.4e-06    0.0014       6      24 .]      69      87 ..      67      87 .. 0.94
   2 !   35.8   2.2   4.2e-12   4.2e-09       2      23 ..     110     131 ..     109     132 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.4e-06
                TTSSS-THHHHHSTTTEEE CS
        Fer4  6 ekCigCGaCvevCPvgAIt 24
                ekC+ C  C+ +CP  AI+
  CCG93136.1 69 EKCVSCQFCEFICPPRAIR 87
                9****************96 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 4.2e-12
                 EEETTTSSS-THHHHHSTTTEE CS
        Fer4   2 videekCigCGaCvevCPvgAI 23 
                  id+ +Ci+CG+C+evCP +AI
  CCG93136.1 110 FIDMTRCIYCGLCEEVCPEEAI 131
                 59*******************9 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   6.9   1.4e-13   1.4e-10       1      52 []      70     130 ..      70     130 .. 0.80

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 1.4e-13
      Fer4_7   1 rCigCgaCvaaCpvkaield.........eeenekgtekveidpekClgCgaCvavCPtga 52 
                 +C+ C++C+  Cp +ai++          ++++ek  ++  id+++C++Cg C++vCP +a
  CCG93136.1  70 KCVSCQFCEFICPPRAIRIIpgeipledkYAKVEKAPKEFFIDMTRCIYCGLCEEVCPEEA 130
                 7*****************88444434332245555668899*****************876 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   2.4   4.4e-05     0.044       6      24 .]      68      86 ..      68      86 .. 0.90
   2 !   23.7   2.1   3.3e-08   3.3e-05       3      24 .]     110     131 ..     108     131 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.4e-05
      Fer4_6  6 pdkCigCgdCvrvCPegai 24
                ++kC++C  C+ +CP  ai
  CCG93136.1 68 REKCVSCQFCEFICPPRAI 86
                79*************7776 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 3.3e-08
      Fer4_6   3 eidpdkCigCgdCvrvCPegai 24 
                  id  +Ci Cg C+ vCPe ai
  CCG93136.1 110 FIDMTRCIYCGLCEEVCPEEAI 131
                 699*****************98 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   1.4   7.3e-05     0.072      33      51 .]      65      86 ..      37      86 .. 0.75
   2 !   29.6   7.3   5.8e-10   5.8e-07       1      51 []      70     131 ..      70     131 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.3e-05
      Fer4_9 33 e...eaCigCgaCveaCpkgai 51
                e   e+C++C+ C+ +Cp  ai
  CCG93136.1 65 EegrEKCVSCQFCEFICPPRAI 86
                1345799999999999998876 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 5.8e-10
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase...........eaCigCgaCveaCpkgai 51 
                 kC++C+ C+  Cp  +++   +e   + + a+            ++Ci Cg C+e+Cp++ai
  CCG93136.1  70 KCVSCQFCEFICPPRAIRIIPGEIPLEDKYAKVekapkeffidmTRCIYCGLCEEVCPEEAI 131
                 7************9999988888888876666588999******9**************987 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.9   5.2e-05     0.052       7      21 ..      68      82 ..      62      83 .. 0.90
   2 !   19.8   1.3   5.9e-07   0.00059       3      22 .]     109     128 ..     106     128 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.2e-05
      Fer4_2  7 tdrCigCgaCvsaCP 21
                +++C++C  C   CP
  CCG93136.1 68 REKCVSCQFCEFICP 82
                78************9 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 5.9e-07
      Fer4_2   3 vvvdtdrCigCgaCvsaCPa 22 
                 +++d  rCi Cg C  +CP+
  CCG93136.1 109 FFIDMTRCIYCGLCEEVCPE 128
                 799****************5 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2  11.1   2.1e-07   0.00021       1      65 [.      70     127 ..      70     129 .. 0.72
   2 !   18.4   1.4   3.2e-06    0.0032       1      18 [.     115     132 ..     115     157 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.1e-07
     Fer4_16   1 rCgtCgkCaevCPtnaikekkekeiearecisyntaekkdlaedeekckkqeaitgCdiCqdvCP 65 
                 +C++C+ C  +CP +ai+       e++ + +y  a+ ++++++ + ++  +++++C+ C++vCP
  CCG93136.1  70 KCVSCQFCEFICPPRAIRII---PGEIPLEDKY--AKVEKAPKEFFIDM--TRCIYCGLCEEVCP 127
                 6*****************88...4555566566..33333344333333..6788********** PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3.2e-06
     Fer4_16   1 rCgtCgkCaevCPtnaik 18 
                 rC+ Cg C evCP++ai 
  CCG93136.1 115 RCIYCGLCEEVCPEEAIF 132
                 6***************95 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   2.5   7.2e-05     0.072      38      57 ..      68      86 ..      61      88 .. 0.83
   2 !   22.1  11.0   1.2e-07   0.00012       5      57 ..      68     131 ..      67     134 .. 0.77
   3 !   15.8   1.7   1.2e-05     0.012       3      22 ..     111     130 ..     109     141 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.2e-05
     Fer4_21 38 edeCvGCnlCssvCPvedci 57
                 ++Cv C+ C  +CP   +i
  CCG93136.1 68 REKCVSCQFCEFICP-PRAI 86
                589************.5666 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 1.2e-07
     Fer4_21   5 edkCigCgkCliaCedtshqai...........eidak.tvlkvvedeCvGCnlCssvCPvedci 57 
                 ++kC++C+ C   C+  ++  i           +++++ + + +   +C+ C lC +vCP e++i
  CCG93136.1  68 REKCVSCQFCEFICPPRAIRIIpgeipledkyaKVEKApKEFFIDMTRCIYCGLCEEVCP-EEAI 131
                 589*****************999988877754422222123355688*************.6877 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 1.2e-05
     Fer4_21   3 idedkCigCgkCliaCedts 22 
                 id  +Ci Cg+C  +C++++
  CCG93136.1 111 IDMTRCIYCGLCEEVCPEEA 130
                 66667777777777777644 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5  11.0     8e-07    0.0008       6      56 .]      68     127 ..      63     127 .. 0.84
   2 !   18.8   1.1   1.3e-06    0.0013       4      24 ..     111     136 ..     108     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 8e-07
     Fer4_10   6 ddtCirCgkCvkaCPadl.........tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 +++C+ C+ C   CP  +          ++++ + ++  ++  +++ +C+ cg C e+CP
  CCG93136.1  68 REKCVSCQFCEFICPPRAiriipgeipLEDKYAKVEKAPKEFFIDMTRCIYCGLCEEVCP 127
                 689*************99******977555555666666666679**************9 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.3e-06
     Fer4_10   4 idddtCirCgkCvkaCPadl.....t 24 
                 id  +Ci Cg C ++CP  +     +
  CCG93136.1 111 IDMTRCIYCGLCEEVCPEEAifllpK 136
                 8999*************966555552 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   3.0    0.0029       2.8       3      62 ..      69      82 ..      32      86 .. 0.70
   2 !   17.5  11.7   4.3e-06    0.0043       3      64 ..      69     129 ..      67     130 .. 0.77
   3 !   18.1   0.3   2.7e-06    0.0027       2      17 ..     113     137 ..     112     164 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0029
      Fer4_8  3 ekCieCgaCqsaCpvlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCp 62
                ekC+ C++C+  C                                              p
  CCG93136.1 69 EKCVSCQFCEFIC----------------------------------------------P 82
                3555555555555..............................................5 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 4.3e-06
      Fer4_8   3 ekCieCgaCqsaCp..vlrrtk.khlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvg 64 
                 ekC+ C++C+  Cp  ++r    + +l+ ++ + e++ +e        + +C  cg C+evCp++
  CCG93136.1  69 EKCVSCQFCEFICPprAIRIIPgEIPLEDKYAKVEKAPKEFF----IDMTRCIYCGLCEEVCPEE 129
                 69***********98866666557776666666663555555....569**************85 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 2.7e-06
      Fer4_8   2 lekCieCgaCqsaCp.........v 17 
                 + +Ci Cg+C++ Cp         +
  CCG93136.1 113 MTRCIYCGLCEEVCPeeaifllpkI 137
                 6799999999999987766555552 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   2.1     0.002         2      40      57 ..      65      82 ..      53      86 .. 0.85
   2 !   18.6  10.2   2.1e-06    0.0021       1      59 [.      70     129 ..      70     130 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.002
     Fer4_17 40 eekaslCieCgeCerkCP 57
                ee  ++C++C+ Ce  CP
  CCG93136.1 65 EEGREKCVSCQFCEFICP 82
                567789***********9 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 2.1e-06
     Fer4_17   1 rCiqCgyClpeCpsyeaydnepkkllraaklglleeaeke..ekaslCieCgeCerkCPqg 59 
                 +C +C++C+  Cp  +++    + +l++ k++++e+a ke    + +Ci Cg+Ce++CP++
  CCG93136.1  70 KCVSCQFCEFICPPRAIRIIPGEIPLED-KYAKVEKAPKEffIDMTRCIYCGLCEEVCPEE 129
                 6************988877766777777.555788876775569***************86 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   1.4   0.00037      0.37       2      15 ..      69      82 ..      68      96 .. 0.94
   2 !   13.6   0.8   7.5e-05     0.075       2      16 ..     114     128 ..     113     139 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00037
      Fer4_4  2 erCigCgsCvaaCP 15
                e+C+ C  C+ +CP
  CCG93136.1 69 EKCVSCQFCEFICP 82
                89***********9 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 7.5e-05
      Fer4_4   2 erCigCgsCvaaCPq 16 
                  rCi Cg C+ +CP 
  CCG93136.1 114 TRCIYCGLCEEVCPE 128
                 59************5 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.7     0.004         4       1      13 [.      70      82 ..      61      86 .. 0.76
   2 !   12.3   0.2   0.00024      0.24      68      94 ..     100     128 ..      95     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.004
     Fer4_22  1 rClsCgaCtlvCp 13
                +C+sC+ C ++Cp
  CCG93136.1 70 KCVSCQFCEFICP 82
                5777777777776 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00024
     Fer4_22  68 hklsefkekf..gesgCvGCgRCieacpv 94 
                  k+++  ++f  +++ C+ Cg C+e+cp+
  CCG93136.1 100 AKVEKAPKEFfiDMTRCIYCGLCEEVCPE 128
                 57777777777788999999999999997 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   3.7     0.074        73       1      15 []      71      85 ..      71      85 .. 0.94
   2 ?   16.4   3.4   1.3e-05     0.013       1      15 []     116     130 ..     116     130 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.074
      Fer4_3  1 CtgCgaCvevCPvgA 15
                C+ C+ C+  CP++A
  CCG93136.1 71 CVSCQFCEFICPPRA 85
                999*99******988 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.3e-05
      Fer4_3   1 CtgCgaCvevCPvgA 15 
                 C+ Cg+C+evCP+ A
  CCG93136.1 116 CIYCGLCEEVCPEEA 130
                 9***********866 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.6    0.0095       9.5       3      17 ..      68      82 ..      66      83 .. 0.94
   2 ?   12.9   2.3   0.00012      0.12       1      18 [.     111     128 ..     111     129 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0095
     Fer4_13  3 rdtCiacgaCvelaP 17
                r++C++c+ C  ++P
  CCG93136.1 68 REKCVSCQFCEFICP 82
                79************9 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00012
     Fer4_13   1 VDrdtCiacgaCvelaPd 18 
                 +D  +Ci cg+C e++P+
  CCG93136.1 111 IDMTRCIYCGLCEEVCPE 128
                 7999*************7 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.7   0.00087      0.87      53      73 ..      63      83 ..      25      92 .. 0.74
   2 ?    8.1   1.5    0.0029       2.9      57      73 ..     112     128 ..      91     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00087
     Fer4_18 53 rkekgagdcidcescvkvcPt 73
                + e+g  +c++c++c  +cP 
  CCG93136.1 63 KDEEGREKCVSCQFCEFICPP 83
                56788999***********95 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0029
     Fer4_18  57 gagdcidcescvkvcPt 73 
                 +++ ci c+ c +vcP 
  CCG93136.1 112 DMTRCIYCGLCEEVCPE 128
                 5678************6 PP

>> c-SKI_SMAD_bind  c-SKI Smad4 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.3    0.0054       5.4      24      41 ..      67      84 ..      56      89 .. 0.85
   2 ?    3.7   0.4     0.072        72      18      38 ..     106     126 ..      99     135 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0054
  c-SKI_SMAD_bind 24 seakCikCleCkllfspq 41
                      + kC+ C+ C+ +  p+
       CCG93136.1 67 GREKCVSCQFCEFICPPR 84
                     5789********998886 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.072
  c-SKI_SMAD_bind  18 pelyssseakCikCleCkllf 38 
                      p+ +  + ++Ci C  C+ + 
       CCG93136.1 106 PKEFFIDMTRCIYCGLCEEVC 126
                      778888899********9764 PP

>> ETF_QO  Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.8     0.094        93      73      93 ..      69      89 ..      65      99 .. 0.85
   2 ?    7.5   0.1    0.0044       4.4      62      90 ..     103     131 ..      95     136 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.094
                CC--S--HHHHH-TT--EEE- CS
      ETF_QO 73 qnCvhCktCdikdpsqniewv 93
                + Cv C+ C+   p + i+  
  CCG93136.1 69 EKCVSCQFCEFICPPRAIRII 89
                58********99999988765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0044
                 TTSSEEEEE-CCC--S--HHHHH-TT--E CS
      ETF_QO  62 eakekklqinaqnCvhCktCdikdpsqni 90 
                 e+  k++ i+ + C++C  C+   p++ i
  CCG93136.1 103 EKAPKEFFIDMTRCIYCGLCEEVCPEEAI 131
                 34678999************998888877 PP

>> SCRG1  Scrapie-responsive protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       7.9   7.8e+03      36      40 ..      28      32 ..      26      40 .. 0.78
   2 ?    5.5   1.3     0.018        18      40      63 ..      64      87 ..      61      95 .. 0.86
   3 ?    7.5   1.0    0.0044       4.4      29      68 ..     101     137 ..      92     141 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7.9
       SCRG1 36 dhfwe 40
                 hfw+
  CCG93136.1 28 KHFWD 32
                59998 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.018
       SCRG1 40 egkgcevvcycnfkellccpkdif 63
                + +g e    c+f e++c p+ i 
  CCG93136.1 64 DEEGREKCVSCQFCEFICPPRAIR 87
                568999999***********9886 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0044
       SCRG1  29 kideslqdhfwegkgcevvcycnfkellccpkdiffgpki 68 
                 k+++  ++ f +   c    yc + e +c    if+ pki
  CCG93136.1 101 KVEKAPKEFFIDMTRC---IYCGLCEEVCPEEAIFLLPKI 137
                 5666666666666666...6********99999******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1139.09
//
Query:       CCG93137.1  [L=75]
Description: hypothetical protein MFUM_940011 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 504.56
//
Query:       CCG93138.1  [L=151]
Description: hypothetical protein MFUM_940013 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1181.22
//
Query:       CCG93139.1  [L=839]
Description: Outer membrane receptor protein, mostly Fe transport (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0012   19.4   0.3      0.003   18.1   0.3    1.7  1  Plug      TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.3   1.7e-07     0.003      10     107 ..      97     188 ..      84     189 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.7e-07
                 EEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHCTTSSTGSSE CS
        Plug  10 svvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpianggsgagdlssidpedierievlkGpasalyGsdaigG 107
                 + + +  + +qg  +       +pg    s+++g   +  s+RG+   + + +++G++  +  +++ +l  ++ +++e+ ++  Gpa a +G++ ++G
  CCG93139.1  97 TLIRSSGMAAQGYIDPLSTAFLIPGAI--SENSGALMAAPSVRGM---AAQPYINGIQF-TALQSGMPLTPFNWNMVESEDITEGPANAVFGQQQPAG 188
                 445555566666666666666799988..8999999999******...89*******86.5799999***************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 6458.41
//
Query:       CCG93140.1  [L=342]
Description: Predicted oxidoreductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-46  159.1   0.0    1.6e-46  158.9   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.9   0.0   8.9e-51   1.6e-46       2     293 ..      16     315 ..      15     316 .. 0.93

  Alignments for each domain:
  == domain 1  score: 158.9 bits;  conditional E-value: 8.9e-51
                   EEEE-SSS-ST...TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.........--SSSTTSSSS-HHHHH CS
  Aldo_ket_red   2 lglGtwqlgsk..eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.........dlrdaeiksglskenir 87 
                   +g+G+w+l+++  ++++++ea++ll+ a++ GinffDtA+vYg g+ ee+l++a+ +     ++v+iatK+         +  ++e ++++s   + 
    CCG93140.1  16 IGFGLWTLTTGwwGTYTEAEAIRLLKEAYDLGINFFDTADVYGHGYGEEILAKAFPN----SKDVVIATKIgynfynevdRSAQQELPQDFSVPFLK 108
                   9******************************************************99....9*********99888888878888888888888*** PP

                   HHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEE.....S--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHH CS
  Aldo_ket_red  88 esleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvS.....nfsveqlekakkkkkvkivavqveynllreleeegllelc 179
                   e+l++slkrL++dy+D l+lH++  ++++   ++++le+  keG ir++Gv+     ++  e le++   +  k+ +vq  yn+l++   ++l + +
    CCG93140.1 109 EALHRSLKRLKRDYIDNLQLHNIRLAHVKDDAIWQFLEDQLKEGTIRSYGVAlgpaiGWLYEGLESI---RLRKPHIVQHIYNILESYPGKELMSKA 202
                   ****************************************************865555555556655...9999*********************** PP

                   HHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGG CS
  Aldo_ket_red 180 kkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednlda 276
                   ++ + +     p ++G+l+g y++++++ ++++r+ ++ +++++  l+++ +l+ l+   + sl q+al+++l+ ++v + +p+  n+ ql++ ++a
    CCG93140.1 203 AWDQTRYLIRVPHASGMLEGHYTPQTKFSQTDHRR-FRPKHWLQNGLKKIATLQFLVLP-NRSLGQAALQWILNEKKVLSCLPNIYNSTQLKEFAQA 297
                   ***********************999998777776.56779999999*99999999976.57*********************************** PP

                   GG-.---HHHHHHHHHHH CS
  Aldo_ket_red 277 lel.klseeevaeldell 293
                    +  +l++ee++++d+l+
    CCG93140.1 298 PDCpPLTKEELDKIDSLI 315
                   ***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2732.16
//
Query:       CCG93141.1  [L=115]
Description: Predicted membrane protein (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-27   93.3   8.5    9.5e-27   92.9   8.5    1.1  1  LAB_N     Lipid A Biosynthesis N-terminal domain
  ------ inclusion threshold ------
      0.055   13.7   2.2      0.078   13.2   2.2    1.2  1  VirB3     Type IV secretory pathway, VirB3-like protein
       0.94    9.9   4.6        1.6    9.1   4.6    1.5  1  MgtE      Divalent cation transporter


Domain annotation for each model (and alignments):
>> LAB_N  Lipid A Biosynthesis N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   8.5   1.6e-30   9.5e-27       1      71 []      26      96 ..      26      96 .. 0.99

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 1.6e-30
       LAB_N  1 lGflgqllFtlRfvvQwiasekkkksvlpvlFWvlSllGslllliYailrkDpvlilgqslglviyirNla 71
                +G++g++lF++Rfv+Qwia+ekkk +v+p++FW++SllGslllliYa++r D+v+i++ +++++ y rNl+
  CCG93141.1 26 IGWIGNILFFSRFVIQWIATEKKKAVVVPLAFWYCSLLGSLLLLIYAFYRWDSVFIFAYLFSWIPYSRNLY 96
                8********************************************************************97 PP

>> VirB3  Type IV secretory pathway, VirB3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.2   1.3e-05     0.078      15      67 ..      15      84 ..      13      99 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
       VirB3 15 llGvplelvllnllvsvilfl.................vglslwillllvplhlvlrliakrDpqmfrvl 67
                +lG+ ++++ +++ +  ilf+                 v l++w++ ll  l+l+ ++  ++D  ++  +
  CCG93141.1 15 FLGIHWSPMKVIGWIGNILFFsrfviqwiatekkkavvVPLAFWYCSLLGSLLLLIYAFYRWDSVFIFAY 84
                89*************************************************************9877666 PP

>> MgtE  Divalent cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.6   0.00027       1.6      32      97 ..      15      75 ..       5      94 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00027
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-.CTSHHHHHHHHHHHHHHHHHH..HHHHHHHHHH CS
        MgtE 32 lkkvllkelrvvlllgvilgllifllalllgwslllalvvglalvlvllaaallilgvllplllwk 97
                +  + ++++ v+ ++g il++ +f+++++ ++  + a+vv la+  + l+ +ll    ll++++++
  CCG93141.1 15 FLGIHWSPMKVIGWIGNILFFSRFVIQWIATE-KKKAVVVPLAFWYCSLLGSLL----LLIYAFYR 75
                5667899*******************999777.666777888888888888888....33344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 925.83
//
Query:       CCG93142.1  [L=193]
Description: putative intracellular protease/amidase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-41  142.4   0.0    1.3e-41  142.1   0.0    1.1  1  DJ-1_PfpI  DJ-1/PfpI family
  ------ inclusion threshold ------
      0.022   14.3   0.1      0.033   13.8   0.1    1.2  1  GATase_3   CobB/CobQ-like glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   0.0   1.5e-45   1.3e-41       1     165 []       3     166 ..       3     166 .. 0.98

  Alignments for each domain:
  == domain 1  score: 142.1 bits;  conditional E-value: 1.5e-45
                 EEEEEEEETTBEHHHHHHHHHHHHHTTEEEEEEESSTSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEE CS
   DJ-1_PfpI   1 kkvlvlladgvedvElivpvdvlkragikvdvvsvdkeevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekgklvaa 99 
                 k++lv+la g+e++E++vp+d l+ra i+v+v++   + ++gsr  ++ +d+ l+dv  + +D+++lpGG +g+e+l+++ ++ el+ ++  kg++vaa
  CCG93142.1   3 KRALVILAPGFEEIEAVVPIDLLRRAKIEVVVAGILPGVITGSRKIRIIPDYDLGDVLEEHFDCIILPGGAEGAENLKKDIRIKELLERQILKGGWVAA 101
                 79************************************************************************************************* PP

                 ETTTHHHHHHTTTTTTSEE--SGGGHHHHHHTTSEE-SS.SEEEETTEEEESSGGGHHHHHHHHHHH CS
   DJ-1_PfpI 100 ICagpqlLaaagvlkgrrvTsypavkdklekagakyvdk.rvvvdgnlvTsrgpgaaiefalellee 165
                 ICa+p  L++ g++ + + T++p++k ++  + ++ +++ +vvvdgnl+T r++g+aief +e++++
  CCG93142.1 102 ICAAPGCLINFGLFLSNKFTCHPSIKAEI--PLSRLEENsSVVVDGNLITGRAAGSAIEFSFEIIRQ 166
                 *****************************..7778877789***********************975 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   3.7e-06     0.033      35      83 ..      58     104 ..      43     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.7e-06
    GATase_3  35 eslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCG 83 
                 + l+e+ d +ilpGg + +   +l+++ +++e +++ + +gg v +iC+
  CCG93142.1  58 DVLEEHFDCIILPGGAEGA--ENLKKDIRIKELLERQILKGGWVAAICA 104
                 345588*********8765..56677788*******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1405.66
//
Query:       CCG93143.1  [L=201]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-48  162.5   0.1    9.6e-48  162.3   0.1    1.0  1  DUF1802   Domain of unknown function (DUF1802)


Domain annotation for each model (and alignments):
>> DUF1802  Domain of unknown function (DUF1802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3   0.1   5.4e-52   9.6e-48       1     173 [.      22     192 ..      22     193 .. 0.97

  Alignments for each domain:
  == domain 1  score: 162.3 bits;  conditional E-value: 5.4e-52
     DUF1802   1 ALkewavaveaLeeGrqivllrKggireergkFeveeeeflLYPtvehqkaellkpeyaallepvasestpekveikawAeveeavevsdeealealsk 99 
                 A+k+w ++veaL++G+q +l+rKggi+e++  F+++++ f+L Pt +h++  ++kp+y++ll+ +  e  +++v +k++A v + + ++d+e+++ ls 
  CCG93143.1  22 AFKDWRIVVEALGQGKQCLLFRKGGIQEKE--FQLKAPTFWLLPTSYHEDLLQIKPQYRTLLAGE--EGAKDRVVLKYIATVYHSLFLTDWEKVRCLSA 116
                 89****************************..******************************999..445678************************** PP

     DUF1802 100 lhiwteeavedrlkykpkqpltvlllRvyrleepvel.petpeyagckswvdlpes.eaeeakPVlsdeefeerka 173
                 +h+w+ee++++r++y +k+ l +l++Rvyr ++p+++  ++++++gc+sw++++ + e  e+++V+++e+f+e+++
  CCG93143.1 117 FHVWEEEILKKRFDYGKKRGLSLLIVRVYRTRSPFTIaWDEKAMGGCRSWIKMTIPsENLEKEAVIDEEKFCEMQK 192
                 *************************************889999************9999*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1622.50
//
Query:       CCG93144.1  [L=228]
Description: Phosphatidylglycerophosphate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-15   55.1   0.9    9.9e-15   55.1   0.9    2.5  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.9   5.5e-19   9.9e-15       1      66 []      36     103 ..      36     103 .. 0.84
   2 ?   -1.6   2.6      0.27   4.8e+03       7       7 ..     159     159 ..     105     212 .. 0.53

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 5.5e-19
                      S-HHHHHHHHHHHHHHHHHGGGS-H.........HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf   1 nlPnaiTllrlllsvlailllltyyp.......lvlailllliasltDalDGklARrlnqvstlGkllDslaD 66 
                      nlPn+++l+r+ +  l +      +         ++a++++l+asltD+lDG++AR +n vs+lGkllD+laD
       CCG93144.1  36 NLPNQLSLARIGMCGLFVA-----DLsidwpfqATTALIIFLLASLTDLLDGWIARNYNLVSELGKLLDPLAD 103
                      69*********98333332.....224566899899999999******************************9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.27
                      H CS
  CDP-OH_P_transf   7 T 7  
                      T
       CCG93144.1 159 T 159
                      1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1868.51
//
Query:       CCG93145.1  [L=112]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   18.1   2.5     0.0019   18.0   0.3    1.9  2  Myosin_N   Myosin N-terminal SH3-like domain
     0.0097   16.2   0.5      0.016   15.6   0.5    1.3  1  DUF3221    Protein of unknown function (DUF3221)
  ------ inclusion threshold ------
      0.067   13.0   0.0       0.14   12.0   0.0    1.5  1  SH3_19     Myosin X N-terminal SH3 domain
        0.1   12.6   0.0       0.14   12.1   0.0    1.3  1  CusF_Ec    Copper binding periplasmic protein CusF
       0.15   11.7   0.0       0.19   11.4   0.0    1.2  1  Kinocilin  Kinocilin protein
        8.8    6.3  10.4          1    9.3   0.3    2.8  3  YajC       Preprotein translocase subunit


Domain annotation for each model (and alignments):
>> Myosin_N  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3   6.4e-07    0.0019      15      38 ..      32      55 ..      25      56 .. 0.94
   2 ?   -0.4   0.1      0.35     1e+03      27      37 ..      82      93 ..      76      96 .. 0.51

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 6.4e-07
                EEEEEEEESSEEEEEETTSEEEEE CS
    Myosin_N 15 kGeIkeeeGdkvtVetedGktvtV 38
                 G++++++++++++et++G+t+tV
  CCG93145.1 32 MGTVTSISDNSLVIETKKGETKTV 55
                699********************9 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.35
                EEEE.TTSEEEE CS
    Myosin_N 27 tVet.edGktvt 37
                +V   ++G +++
  CCG93145.1 82 VVHAkKSGDKLE 93
                444444555544 PP

>> DUF3221  Protein of unknown function (DUF3221)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.5   5.3e-06     0.016       2      64 ..      33      87 ..      32      91 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.3e-06
     DUF3221  2 GyvieksdnriLvvseiekeeaenlseeeiekykgeaiwvlidsdkvsnlevGqkVrVwfdgk 64
                G+v ++sdn++ +  ++ ++++        e   ++ + ++ + ++++nl++G++V V+ + k
  CCG93145.1 33 GTVTSISDNSLVIETKKGETKTV-------EINSSTQYVFKGNPSSLENLKKGMRVVVHAK-K 87
                78888888876665554444433.......34556799999*****************998.4 PP

>> SH3_19  Myosin X N-terminal SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.6e-05      0.14      16      42 ..      33      59 ..      24      65 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.6e-05
      SH3_19 16 stVsscddgsvvlttdYGevitlkqee 42
                 tV+s +d+s+v++t  Ge  t++ ++
  CCG93145.1 33 GTVTSISDNSLVIETKKGETKTVEINS 59
                6******************99888775 PP

>> CusF_Ec  Copper binding periplasmic protein CusF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.7e-05      0.14       1      62 [.      33      93 ..      33      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.7e-05
                EEEEEEETTCTEEEEEE--BCCCTB.-SEEEEEE--TTSEESS-STT-EEEEEEEEETTCEEE CS
     CusF_Ec  1 GvVkavdaaagkvtlsHgpipalgw.paMtMdFkvadpallaglkaGdkVrFefekrdggeyv 62
                G+V+++  ++  +  + g+ ++++       +Fk  +p+ l++lk+G +V ++++k +++ ++
  CCG93145.1 33 GTVTSISDNSLVIETKKGETKTVEInSSTQYVFKG-NPSSLENLKKGMRVVVHAKKSGDK-LE 93
                88999999998999999999999984455556665.688*****************9876.55 PP

>> Kinocilin  Kinocilin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.4e-05      0.19      49     109 ..      11      77 ..       5      91 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.4e-05
   Kinocilin  49 glgllllaypflkarfnldrilpaign.....lrihpqrgpdh.gegrsstngkkegarsslstvsr 109
                 ++ ++++a p + a  nl++i+ ++ +     l i  ++g+ +  e +sst+   +g  ssl  + +
  CCG93145.1  11 SFFIMIFAMPTVYAHGNLEHIMGTVTSisdnsLVIETKKGETKtVEINSSTQYVFKGNPSSLENLKK 77 
                 66799*****************998751112256777776554146677777777777777765544 PP

>> YajC  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   2.1         2   5.9e+03       8      15 ..      10      17 ..       4      22 .. 0.45
   2 ?    9.3   0.3   0.00035         1      47      71 ..      31      57 ..      30      66 .. 0.74
   3 ?    3.6   0.0      0.02        61      32      44 ..      72      84 ..      65      90 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2
        YajC  8 lifvifyf 15
                + f i++f
  CCG93145.1 10 FSFFIMIF 17
                22223333 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00035
        YajC 47 ivGkvvkvdddevtveigesa..gvki 71
                i+G+v++++d+++++e+++ +   v+i
  CCG93145.1 31 IMGTVTSISDNSLVIETKKGEtkTVEI 57
                89*******999999997665323444 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.02
        YajC 32 lasLkkGdeVvti 44
                l++LkkG +Vv  
  CCG93145.1 72 LENLKKGMRVVVH 84
                89********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 824.74
//
Query:       CCG93146.1  [L=204]
Description: Cytochrome c553 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-11   43.9   0.1    4.5e-11   42.9   0.1    1.5  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    4.6e-05   24.5   0.0    0.00012   23.2   0.0    1.7  1  Cytochrom_C      Cytochrome c


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.1   5.1e-15   4.5e-11       4      67 .]      72     153 ..      69     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 5.1e-15
  Cytochrome_CBB3   4 aaGaalykknCasCHgkggag............psla...grdwepdalvdiiknGk..gaMpafgg.qlsdeelwalvaYl 67 
                      ++ +  ++ +Ca CHg++g g             +l+    ++ ++ +++ ii nG+  ++Mpa+g  + +de+ w+lv ++
       CCG93146.1  72 DEARDHFADHCALCHGNNGSGetpvgqnlypkpTDLRskeAQKKSDGEIYYIIHNGIrwTGMPAWGEaKEPDEDSWKLVHFI 153
                      6778899*********888888888877887664555221334445***********555******99************98 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.3e-08   0.00012       6      91 ..      76     156 ..      71     157 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.3e-08
                  HHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--H.HHHHHHHHHHHTT CS
  Cytochrom_C   6 elftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlte.qeiadlaaYLksl 91 
                    f+++Ca CHg +g g ++  g++l    +   +++ +     ++ + + + +++++  ++ mpa+ e   + ++ ++l++++++l
   CCG93146.1  76 DHFADHCALCHGNNGSGETPV-GQNLYPKPTDLRSKEAQ-----KKSDGEIYYIIHNGIRWTGMPAWGEAKEPdEDSWKLVHFIRHL 156
                  67988************9865.55555544444444444.....44455579999**********9985554448899999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1121  (0.0625244); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 1819.03
//
Query:       CCG93147.1  [L=194]
Description: Intracellular proteinase inhibitor [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-18   64.2   0.0    1.2e-17   63.8   0.0    1.2  1  BsuPI       Intracellular proteinase inhibitor
  ------ inclusion threshold ------
      0.083   12.9   0.0       0.13   12.4   0.0    1.3  1  Toxin_YhaV  Toxin with endonuclease activity, of toxin-antito
       0.09   12.8   0.0       0.16   12.0   0.0    1.3  1  Wzt_C       Wzt C-terminal domain


Domain annotation for each model (and alignments):
>> BsuPI  Intracellular proteinase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0     2e-21   1.2e-17      13      96 ..      91     179 ..      80     183 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 2e-21
                 -EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEE......S---SEEEEEEEEE- CS
       BsuPI  13 avelaltvtNesdeavtlqFssgqkydlvvkdeegeevwrysegrmFtqalssetlepgesatyeetwd.....edlepGeYtleaelv 96 
                 ++++ lt+ N + ++ t++F+++q++d+ +++ ++e ++ +se++ F  +++++ l+p++++ty+e +      ++l+pG+Y +  +l+
  CCG93147.1  91 SLRVVLTIFNSGRRTYTFKFPDSQRFDFRIRNASNEIIYVWSEDKEFLPMVGTTILNPNDTLTYSEVVAieeldQPLQPGTYWIDSILA 179
                 7899****************************************************************99988779******9887765 PP

>> Toxin_YhaV  Toxin with endonuclease activity, of toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.1e-05      0.13      63     104 ..      97     138 ..      64     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.1e-05
  Toxin_YhaV  63 tLgekykhwkrakllqryRLFFRydseskiivlaWvndektl 104
                 t+ ++ ++    k+++  R  FR+ ++s+ i+++W +d+++l
  CCG93147.1  97 TIFNSGRRTYTFKFPDSQRFDFRIRNASNEIIYVWSEDKEFL 138
                 566677888999*************************99876 PP

>> Wzt_C  Wzt C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.6e-05      0.16      20     107 ..     100     178 ..      94     187 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.6e-05
       Wzt_C  20 aegeetstfesgeevtlrikvkahedvedpvfgfaikdrngqevfgtntelekksfeleelkagervevefefklpLapGeYlltval 107
                 ++g++t tf++ ++ ++++++   +  ++ ++ +   d++ + ++gt    ++    +++l  +e+v +e   + pL+pG+Y+++  l
  CCG93147.1 100 NSGRRTYTFKFPDSQRFDFRI---RNASNEIIYVWSEDKEFLPMVGTTI--LN-P--NDTLTYSEVVAIEELDQ-PLQPGTYWIDSIL 178
                 567777778888887777777...5555555666667888888877633..32.2..44556666665555556.9********9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1466.58
//
Query:       CCG93148.1  [L=325]
Description: GDP-mannose 3,5-epimerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-49  167.2   0.0    5.1e-49  166.9   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
      9e-33  114.1   0.0    9.9e-32  110.6   0.0    2.4  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    6.4e-09   35.2   0.0    7.7e-09   35.0   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    1.5e-05   24.3   0.0    0.00041   19.6   0.0    2.2  2  NAD_binding_4    Male sterility protein
      4e-05   22.9   0.0       0.14   11.3   0.0    2.9  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0001   22.3   0.0    0.00014   21.8   0.0    1.2  1  NAD_binding_10   NAD(P)H-binding
    0.00025   20.7   0.1     0.0026   17.3   0.1    2.4  2  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.9   0.0     2e-52   5.1e-49       1     241 []       4     244 ..       4     244 .. 0.93

  Alignments for each domain:
  == domain 1  score: 166.9 bits;  conditional E-value: 2e-52
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HHHHHHSHHHHHHHHTHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAa.vggvaassedpadfieknlqgtlnl 98 
                 +lV+Ga GfiG +lv+ l+ekgy v g+d ++ + +++r +  e++ ldl+   ++ ++ k  ++d+v+ lAa  gg++  s + a+++++n+ +++++
  CCG93148.1   4 ALVAGAGGFIGHHLVNFLKEKGYWVRGVDIKEPEYEKSRSD--EFYLLDLRYWGNCLEATK--GVDEVYQLAAdMGGIGYISGNHAEIAKNNILINTHM 98 
                 59*****************************7777766666..9***************99..9*********************************** PP

                 HHHHHHHTCTEEEEEEEGGGGTSCSS.....SS.BSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT.S-TTSTTSHHHHHH CS
   Epimerase  99 leaarkagvkrllflsSsevYGkdae.....qp.keettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr.ngegevsrvipali 190
                 lea+ ++gvkr+ + sS+++Y+   +     +p kee++   p  p + Y+  Kl +ekl+++y+++ g+++ i r  n+yGp  +++g +++  +a+ 
  CCG93148.1  99 LEASYQNGVKRYFYSSSACIYPSYRQqsvdvIPlKEEDA--MPADPEEGYGWEKLFAEKLCQYYQEDKGIETRIARFHNVYGPLgTYKGGREKAPAAIC 195
                 **********************77775566567877777..688****************************************9************** PP

                 HHHHTTS..SSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 191 rkilegk..qevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 rki++++   e+ ++gdg++ R fly++D++e+i+l+ +     d ++ +n+G
  CCG93148.1 196 RKIALAEdsSEIEVWGDGKQTRSFLYIQDCVEGIYLITQS----DYPKPLNLG 244
                 *****99989*************************99998....556666665 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   3.9e-35   9.9e-32       1     330 [.       5     305 ..       5     307 .. 0.86

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 3.9e-35
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S-.--HHHHTTSH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAq.shVdvsfekP 95 
                    L+ G  GfiG +l+++L ekgy v g++ ++ +++ +r ++              ++  Dl+   +  ++ + v  devy LAA    +++   + 
     CCG93148.1   5 LVAGAGGFIGHHLVNFLKEKGYWVRGVDIKEPEYEKSRSDE--------------FYLLDLRYWGNCLEATKGV--DEVYQLAADmGGIGYISGNH 84 
                    89************************998887766555554..............6678999988888888877..9*******8356****99** PP

                    HHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SS.....SSB-TT..S-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE CS
  GDP_Man_Dehyd  96 eytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqe.....vpqtEt..tpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhe 184
                    ++ a++n+l  +++Lea  + g++   r++ +S++ +Y + ++     +p +E+   p +P+  Y+  Kl+a+ +++ y+e  g+ + ++++ n +
     CCG93148.1  85 AEIAKNNILINTHMLEASYQNGVK---RYFYSSSACIYPSYRQqsvdvIPLKEEdaMPADPEEGYGWEKLFAEKLCQYYQEDKGIETRIARFHNVY 177
                    ******************999985...999999999**9986322233677887447889************************************ PP

                    STTS-TTSCCCHHHHHHHH.HHTTS.-C-EEC.TTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH.... CS
  GDP_Man_Dehyd 185 sprrgetfvtrkitravar.ialgk.qevlyl.GnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkge 277
                    +p  + +   +k + a++r ial +  + +++ G+++++R++++++D ve++ l+ q+d p+  ++++ e ++++++ve++++ + k         
     CCG93148.1 178 GPLGTYKGGREKAPAAICRkIALAEdSSEIEVwGDGKQTRSFLYIQDCVEGIYLITQSDYPKPLNLGSEELVTIDQLVEMTAKVANK--------- 264
                    ***999998888888887534444433444445**********************************************98766654......... PP

                    ........TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHH CS
  GDP_Man_Dehyd 278 eevgrakesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvr 330
                                 ++++ +  +p+ v+ +  d+sk+ +  gW+pk+ + e+++
     CCG93148.1 265 ------------NIRIRHNLSKPQGVRGRNSDNSKLYKITGWRPKFPLLEGLK 305
                    ............467788889999999999***************99988876 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0     3e-12   7.7e-09       1     159 [.       5     159 ..       5     220 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 3e-12
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag..kltedeimkvnvkGTr 97 
                 +v G++GF+G++lv+ L + +    vr +D++e +      +k++ +++   D++   +  ea++gvd v  la+ +   g    ++ ei k n+    
  CCG93148.1   5 LVAGAGGFIGHHLVNFLKEKG--YWVRGVDIKEPEY-----EKSRSDEFYLLDLRYWGNCLEATKGVDEVYQLAADMGGIGyiSGNHAEIAKNNILINT 96 
                 699***********8766555..68******87544.....57777788899********************988666666333466789999**9999 PP

   3Beta_HSD  98 nvleacvkagvrvlvYtSsaevvgpnslge..eilngdEeleyeslhqdaypesKalaEklvlk 159
                  +lea  ++gv++  Y Ssa  ++p  +++  +++  +Ee  ++  +++ y   K  aEkl   
  CCG93148.1  97 HMLEASYQNGVKRYFYSSSA-CIYPSYRQQsvDVIPLKEEDAMPADPEEGYGWEKLFAEKLCQY 159
                 ***************99887.67776655522567889**********************9765 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.026        66       2      16 ..       7      21 ..       6      28 .. 0.86
   2 !   19.6   0.0   1.6e-07   0.00041      88     209 ..      64     181 ..      56     220 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.026
                   E-TTSHHHHHHHHHH CS
  NAD_binding_4  2 TGaTGFLGkvLlekL 16
                    Ga GF+G +L++ L
     CCG93148.1  7 AGAGGFIGHHLVNFL 21
                   7**********9866 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 1.6e-07
                    --EEEE--SS-S.....STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHH CS
  NAD_binding_4  88 vdviihsaAtvn....fdepykellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqs 179
                    vd ++  aA++     + ++  e+ + N++   ++le + +   +  + + S+a++++  +++           +++  ++e a  ++ +++Y + 
     CCG93148.1  64 VDEVYQLAADMGgigyISGNHAEIAKNNILINTHMLEASYQNGVK-RYFYSSSACIYPSYRQQS---------VDVIPLKEEDAMPADPEEGYGWE 149
                    444555555443111133355566677777777777777766555.777777777776666543.........3567799999************* PP

                    HHHHHHHHHHHHHHH---EEEEEE-EEE-..- CS
  NAD_binding_4 180 KalaEklvrearrrsglpvvivRpsiitg..e 209
                    K  aEkl++ +++ +g+ + i R  +++g   
     CCG93148.1 150 KLFAEKLCQYYQEDKGIETRIARFHNVYGplG 181
                    ************************99998551 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   5.5e-05      0.14       2     127 ..       5     114 ..       4     121 .. 0.80
   2 !    7.7   0.0   0.00068       1.7     133     176 ..     141     181 ..     128     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.5e-05
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE---.---HHHHH CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAA.lKhVPlve 94 
                      lv+GagG iG++lv+ +lk+k   ++ ++ +E +  + +++          +++    + d+r   ++ +a +  +vd v+  AA +  +  + 
       CCG93148.1   5 LVAGAGGFIGHHLVN-FLKEKGYWVRGVDIKEPEYEKSRSD----------EFY----LLDLRYWGNCLEATK--GVDEVYQLAAdMGGIGYIS 81 
                      788888888888885.5666777777777777765443332..........234....889999999999999..9*****98875789***** PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliS 127
                       n +e  k+N+l  ++++ea+ ++gvk+  + S
       CCG93148.1  82 GNHAEIAKNNILINTHMLEASYQNGVKRYFYSS 114
                      ***************************987655 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00068
                      S--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTGTT CS
  Polysacc_synt_2 133 nPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlgSrG 176
                      +P   +G  K++aekl+q +++ +     +  + Rf NV g  G
       CCG93148.1 141 DPEEGYGWEKLFAEKLCQYYQEDK---GIETRIARFHNVYGPLG 181
                      68888***************9998...6777889*****98665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   5.4e-08   0.00014       1     105 [.       8     122 ..       8     156 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 5.4e-08
                     TTTSHHHHHHHHHHHHC-T-EEEEE.ETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-..........--TCC..HHHH....H CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtal.vRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsal..........ggggk..deeg....a 78 
                     GA G +G++lv+ l ++g + v+ + + +pe      ++   e   +d+       ea kg+d V+  +          g++++  +        
      CCG93148.1   8 GAGGFIGHHLVNFLKEKG-YWVRGVdIKEPEYE----KSRSDEFYLLDLRYWGNCLEATKGVDEVYQLAadmggigyisGNHAEiaK--NniliN 95 
                     9****************5.99999844445444....4567799999******************9999566555444322222433..145778 PP

                     HHHHHHHHHCT--EEEEEEETTTTSGC CS
  NAD_binding_10  79 knivdaakeagvkRfvlvsaigvgdev 105
                      ++++a  ++gvkR+ + s+++++ + 
      CCG93148.1  96 THMLEASYQNGVKRYFYSSSACIYPSY 122
                     8889******************99654 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1     1e-06    0.0026       2     102 ..       5     115 ..       4     129 .. 0.71
   2 ?   -1.3   0.0      0.51   1.3e+03     208     230 ..     245     267 ..     230     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1e-06
                 EESSTTSHHHHHHHHHHHHHT-EEEEE.ES-S.......-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG..............S-H CS
        NmrA   2 lviGaTGrqGksvvrallkaghkvral.vRdt.......kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy..............ske 78 
                 lv Ga G +G ++v++l ++g+ vr + ++++       +            e+   dl    +  ea kgvd v+   + +              +++
  CCG93148.1   5 LVAGAGGFIGHHLVNFLKEKGYWVRGVdIKEPeyeksrsD------------EFYLLDLRYWGNCLEATKGVDEVYQLAADMggigyisgnhaeiaKNN 91 
                 799*********************9763777755444333............33334455555555555555555554443344455555555679999 PP

                 HHHHHHHHHHHHHHS-SEEEEEE- CS
        NmrA  79 iedgkklvdAakeaGvkhfiySsl 102
                 i + +++ +A  + Gvk+++ySs 
  CCG93148.1  92 ILINTHMLEASYQNGVKRYFYSSS 115
                 **********************96 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.51
                 -SEEE-HHHHHHHHHHHHTS-EE CS
        NmrA 208 agntlsgneivelfekkigktvk 230
                 +++ ++ +++ve+  k+++k+++
  CCG93148.1 245 SEELVTIDQLVEMTAKVANKNIR 267
                 678899*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2088.67
//
Query:       CCG93149.1  [L=463]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-21   75.7   0.8    4.2e-21   75.2   0.8    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    5.7e-16   59.2   0.3    1.1e-15   58.3   0.3    1.5  1  Glyco_trans_1_4  Glycosyl transferases group 1
    1.2e-12   48.6   0.0    1.9e-12   47.9   0.0    1.3  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    1.7e-08   34.7   0.0    3.4e-08   33.7   0.0    1.5  1  Glyco_transf_4   Glycosyltransferase Family 4
     0.0005   20.4   0.0     0.0011   19.3   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.8   1.2e-24   4.2e-21       6     171 ..     262     429 ..     257     430 .. 0.94

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 1.2e-24
                      HHHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEE CS
  Glycos_transf_1   6 rkklgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlp 99 
                      +kk+g+ e+k ++   g++  ++g+d +i+a+a+lk+  +++++++++G+g+++++l+++a++  l  n++f+  +++e+  +ll++ d+ +++
       CCG93149.1 262 KKKYGL-ENKILVAHTGNMGVKQGLDIVIEAAADLKE--KKEIVFLLVGDGADRYRLEEKAKKMDL-PNLQFISLLPKEEYFSLLSAVDLCLVT 351
                      677777.999*************************97..6**************************.99************************* PP

                      ESS....BSS-HHHHHHHHTT--EEEET..TTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHHH CS
  Glycos_transf_1 100 sis....EgfGivllEAmaaglpviasn..aggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenark 171
                        +      f+  ++ ++aa +pv++s   ++ +a+v+++++ G++v++++++++a+a+r l  d+++r+rlgen+r+
       CCG93149.1 352 QKKevgdIVFPSKVMTYLAASKPVVCSVnkNSEVAKVIEEAQAGVVVPAEDPKEMAKALRTLAMDKDTRNRLGENGRE 429
                      999555557****************98647999*******************************************97 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.3     3e-19   1.1e-15       4     133 ..     273     415 ..     270     416 .. 0.84

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 3e-19
                      EEEES---GG.GTHHHHHHHHHHHH.HH.EEEEEES---...HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--..-....--SH CS
  Glyco_trans_1_4   4 ilfvGrleenvkgvdllleavpllrkkd.vrlvivGdgp.rpeeleelaa..gleerveftGfv..edlaellaaadvfvaPs..e....gfgl 85 
                      + ++G++   ++g+d+++ea++ l++k+ + +++vGdg  r  +lee+a+  +l ++ +f   +  e+  +ll+a+d+++++   e     f+ 
       CCG93149.1 273 VAHTGNM-GVKQGLDIVIEAAADLKEKKeIVFLLVGDGAdR-YRLEEKAKkmDL-PNLQFISLLpkEEYFSLLSAVDLCLVTQkkEvgdiVFPS 363
                      6688999.4449*************8855*********954.69*999975666.899999999877899*************97575566*** PP

                      HHHHHHHTT-EEEE-TGG..GTTT--..TTSSEE--TT-HHHHHHHHHHHHH CS
  Glyco_trans_1_4  86 kllEamaaglpvVatdvg..giaevv..gengllvppgdpealaeailrLle 133
                      k++ ++aa +pvV++  +   +a+v+   ++g++vp++dp+++a+a+ +L  
       CCG93149.1 364 KVMTYLAASKPVVCSVNKnsEVAKVIeeAQAGVVVPAEDPKEMAKALRTLAM 415
                      ***************55312577777866999***************99975 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   5.4e-16   1.9e-12      12     159 ..      70     243 ..      60     244 .. 0.73

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 5.4e-16
  Glyco_trans_4_4  12 raLaarGheVtvlt..........papapg.ape.leedgvrvhrlp..vprrpspladlaal........ralrrllrqrrerpdvvhahspt 83 
                      + +aarG+ V +lt          +a++++  ++ + ++gv + r    vpr+   +++l+++          + r+l    ++pd++ + sp+
       CCG93149.1  70 EYFAARGYKVSILTafpyyplwkiSAEYRRkFFQsEGRNGVAIFRSFiyVPRK---VTTLRRIvhegsfifSSFLRAL--FLRKPDLLFVVSPP 158
                      779***********655555555533333332222447899999853225544...6677666666665555666666..8***********77 PP

  Glyco_trans_4_4  84 ..aglaarlarrrrgiplvvtlhglllrrg...sgavrrly....ralerrllrradavlvvseaeaeelralgvpadrvvvvpn 159
                        +g+ a l++r ++ip+++++ +l ++        + +++      le++++  a+ + ++++ +++++  +g+pa++vv++p 
       CCG93149.1 159 lgLGGTAFLLSRLWKIPYIFHVPDLQPDAArdlRMIKSSIFfdilYKLEKFSYDKAAKISTLTRTMRAKILSKGIPAEKVVLLPD 243
                      5678888899889*********98554433222344444444555788**********************************996 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   9.6e-12   3.4e-08      12     169 ..      69     248 ..      60     249 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 9.6e-12
  Glyco_transf_4  12 araLarrGheVtvvtpgddgpleeev....................elvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalga 86 
                     ++++a+rG++V+++t  +  pl +                        ++ +++v ++ +  +  s+ f++ lr+l+   kpD++ + sp+  g+
      CCG93149.1  69 CEYFAARGYKVSILTAFPYYPLWKISaeyrrkffqsegrngvaifrSFIYVPRKVTTLRRIVHEGSFIFSSFLRALF-LRKPDLLFVVSPPL-GL 161
                     6899**********655554444444455667777667766655532222222222333333444555555555444.45*****9999766.46 PP

  Glyco_transf_4  87 allalrr..rlgiplVltvHglye...krllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDle 169
                     ++ a ++   ++ip++++v +l +   + l   +++ +  +l +le++ +++a ++ + ++++++ +++  g+p+ek++ +p   D++
      CCG93149.1 162 GGTAFLLsrLWKIPYIFHVPDLQPdaaRDLRMIKSSIFFDILYKLEKFSYDKAAKISTLTRTMRAKILS-KGIPAEKVVLLPDWADPD 248
                     6666666567999999999999989987677777888888889999999********************.**********99877776 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     3e-07    0.0011      14      76 ..     364     430 ..     347     437 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3e-07
  Glyco_trans_1_2  14 rlfEaaacGafaltdda..egleelftpgkevilfe..dleelaekiryllanpeerraiaeaarer 76 
                      ++  ++a+  +++++    +++++ +++ + ++++   d++e+a+++r l  + + r++++e++re 
       CCG93149.1 364 KVMTYLAASKPVVCSVNknSEVAKVIEEAQAGVVVPaeDPKEMAKALRTLAMDKDTRNRLGENGREY 430
                      7888999999****96699*************999999**************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 3662.01
//
Query:       CCG93150.1  [L=807]
Description: Outer membrane receptor protein, mostly Fe transport [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.006   17.1   0.0      0.015   15.8   0.0    1.7  1  Plug      TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   8.5e-07     0.015       4     104 ..      73     172 ..      70     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.5e-07
                 CCSSEEEEEEHHHHHHTTTSSHHHH....HTT.STTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGCSSB..GGGEEEEEEEESS CS
        Plug   4 dtpgsvsvvtaediekqgatslada....lqg.vpgvnvsssgggggassisiRGlgsnrvlvlvDGvpianggsgagdlssid..pedierievlkGp 95 
                 dtp +vs +++  +++ g +s +++    + +  p   v   +++g  s   iRG+     l++++G++    +  + +l++++  ++++e+i+++ Gp
  CCG93150.1  73 DTPRAVSPISQTLMKTAGIGSWGKLdplsFTYiNPAAMV-DPSQTGCTSAPDIRGT---TGLTFINGME----ETVNMPLQDVPwnLNMVESIDLVEGP 163
                 788888888888888888888887622223344555555.88888999999****9...89*******8....567888888865589*********** PP

                 CHCTTSSTG CS
        Plug  96 asalyGsda 104
                   a +Gs  
  CCG93150.1 164 PGAVFGSTQ 172
                 ******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (807 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5890.10
//
Query:       CCG93151.1  [L=341]
Description: Rsm22 family methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-16   60.4   0.0    2.1e-16   60.0   0.0    1.1  1  Rsm22            Mitochondrial small ribosomal subunit Rsm22
     0.0067   17.1   0.0      0.014   16.1   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.031   14.1   0.0       0.06   13.2   0.0    1.6  1  Methyltransf_23  Methyltransferase domain
       0.15   12.5   0.1       0.34   11.4   0.1    1.5  1  TAFA             TAFA family
       0.16   12.5   0.1       0.47   11.0   0.0    1.8  2  Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylgluc


Domain annotation for each model (and alignments):
>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   5.9e-20   2.1e-16      37     251 ..      70     295 ..      55     315 .. 0.76

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 5.9e-20
       Rsm22  37 slldvgegpgtal.....waaselweeleevlvidaseelleiskel.aadapelkeaalrrsvirealeleeadLviisyvLleledesreklvknlW 129
                 +l+d g g+g+a      wa+ + ++ l ++   d s  + + ++ +  ++ p++++++l+      + +l e+ ++ +s+vL el++e  e+++  + 
  CCG93151.1  70 HLVDWGCGTGIAArsfcsWAIANNFKVLSSY-FWDYSPLAIKYAQSVfSKEFPNIHRKELK------KSQLPEQFILLLSHVLGELTEEAFEEILSLA- 160
                 4567777777763333337777777666554.45777666665555414556666666444......45778889999***************99877. PP

       Rsm22 130 akaskilvivEeGtpaGfrrvleaRealkaagfhivAPCPHeaaCPlvate.dwChFsqrvaR....lslhrlak.sasvpvedekfsyvakerqpras 222
                  k + +++ vE+  ++ ++++++ Re l+ ++f ++APC H+  C l+ +e +wChF ++v R    +s   +++    ++     +sy+  e++ +++
  CCG93151.1 161 -KNALAILWVEPAKKDYSQKLIHFREILR-KKFWVIAPCLHQQRCQLLEQEkNWCHFFASVPReifqSSFWSYTQnLLGIDLHSLAYSYLVLESNTNTT 257
                 .7778999******************996.68***************99988*********9733224444455544456788899***6555555555 PP

       Rsm22 223 a.........aaRvvrptkvrskkvlidlCsedetlqr 251
                 +           R++   +  ++  ++d C + ++l+ 
  CCG93151.1 258 TnnsqkehnnLFRIIGTVRAYKGYSILDCCYDSGELKT 295
                 556888999899******************99999875 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.8e-06     0.014       2      90 ..      72     161 ..      71     165 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.8e-06
                      EEET-TTSHHHHHHHCTS.....TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl.....gkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeia 90 
                      +d GcGtG  ++ +         +  + +  D+s+ ++++a++ +++e +n++  + + ++lp   ++f l +s ++l  l++e  e++l+ ++
       CCG93151.1  72 VDWGCGTGIAARSFCSWAiannfKVLSSYFWDYSPLAIKYAQSVFSKEFPNIHRKELKKSQLP---EQFILLLS-HVLGELTEEAFEEILSLAK 161
                      699******999988776552113566689***************998778887777777777...47777777.4566666555555555444 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.7e-05      0.06       9      86 ..      52     138 ..      44     216 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
  Methyltransf_23   9 lsdklerll..pklraggrvLdiGcGtGillevl.....rengf..svtgvDlspeaveiae..........kakkaqkdqfdeqeaaepqgkf 83 
                      ++  l++l+  ++ ++++ ++d GcGtGi ++++     + n++  s ++ D sp a++ a+                     + e +++q   
       CCG93151.1  52 WQSVLNELSllGWIPPQSHLVDWGCGTGIAARSFcswaiANNFKvlSSYFWDYSPLAIKYAQsvfskefpniH----------RKELKKSQLPE 135
                      55556555544889999************99999665544444467999*****9999988653333222221..........33334444444 PP

  Methyltransf_23  84 dlI 86 
                      ++I
       CCG93151.1 136 QFI 138
                      444 PP

>> TAFA  TAFA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   9.4e-05      0.34      49      77 ..     186     213 ..     180     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.4e-05
        TAFA  49 ivlkkqwcemePcldgeeckllvdksGws 77 
                 i++kk w  + Pcl+++ c+ll +++ w 
  CCG93151.1 186 ILRKKFW-VIAPCLHQQRCQLLEQEKNWC 213
                 5666666.599***************995 PP

>> Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.3   4.7e+03      15      15 ..     135     135 ..      73     184 .. 0.51
   2 ?   11.0   0.0   0.00013      0.47      10      51 ..     235     280 ..     227     325 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
                      H CS
  Glucosaminidase  15 p 15 
                       
       CCG93151.1 135 E 135
                      0 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00013
                      HCT.-H.HHHHHHHHHHHTTT..TCHHHHHCT-TS...E.BHCTE-SS CS
  Glucosaminidase  10 kygipp.svalaqaalEsgwg..tsrlakeqnNlf...Gikkfrkyds 51 
                       +gi+  s+a++  +lEs+    t++ +ke+nNlf   G  + r+y+ 
       CCG93151.1 235 LLGIDLhSLAYSYLVLESNTNttTNNSQKEHNNLFriiG--TVRAYKG 280
                      567777799**********886677999*******4444..2334432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2388.04
//
Query:       CCG93152.1  [L=42]
Description: hypothetical protein MFUM_940027 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 292.92
//
Query:       CCG93153.1  [L=872]
Description: Outer membrane receptor protein, mostly Fe transport [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   15.1   0.1        0.1   13.2   0.1    2.1  1  Plug      TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   5.6e-06       0.1       2     103 ..     108     211 ..     107     217 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.6e-06
                 HGCCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEE.....EETTB-GGCSEEEETTEEESC.CCCSCTCGCSSBGGGEEEEEEEES CS
        Plug   2 kkdtpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassi.....siRGlgsnrvlvlvDGvpian.ggsgagdlssidpedierievlkG 94 
                 ++dtp +v+ v++  + ++g++ l+ +++ ++ ++v + ++ g+   +     +i G+   +   +v+G++++  +  +++     + ++ie++++l G
  CCG93153.1 108 VMDTPRTVTPVNKTLMYASGVNALGGMMNPMALLTV-NPTTFGSVMDFmtdapYILGT---QAVPYVNGIELSLtNIMMGNAGLPWNWNMIESFDLLEG 202
                 679999999999999*9************9999999.555555555555777799999...8999******98854444444446689*********** PP

                 SCHCTTSST CS
        Plug  95 pasalyGsd 103
                 pa a +G+ 
  CCG93153.1 203 PANAVFGQT 211
                 ******974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (872 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 6227.39
//
Query:       CCG93154.1  [L=402]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-14   51.8   0.7    9.9e-06   25.0   0.3    3.9  4  BNR_2           BNR repeat-like domain
    1.2e-10   39.7  10.4      0.023   14.6   0.2    6.5  6  BNR             BNR/Asp-box repeat
     0.0021   17.4   0.3      0.075   12.3   0.1    2.7  3  BNR_3           BNR repeat-like domain
     0.0075   15.1   0.0       0.54    9.0   0.0    3.0  4  Sortilin-Vps10  Sortilin, neurotensin receptor 3,
  ------ inclusion threshold ------
      0.094   12.8   5.0       0.35   11.0   0.0    3.2  3  BNR_6           BNR-Asp box repeat
       0.11   12.5   0.1         12    6.0   0.0    3.1  4  CHB_HEX_C       Chitobiase/beta-hexosaminidase C-terminal dom
       0.35   10.1   4.7         22    4.1   0.1    3.4  4  DUF4185         Domain of unknown function (DUF4185)
       0.99    9.4   4.8         20    5.2   0.2    3.6  3  Mo-co_dimer     Mo-co oxidoreductase dimerisation domain


Domain annotation for each model (and alignments):
>> BNR_2  BNR repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   4.9e-05      0.11     185     249 ..      70     142 ..      42     146 .. 0.59
   2 !   25.0   0.3   4.4e-09   9.9e-06     139     255 ..     186     312 ..     176     315 .. 0.79
   3 !    4.8   0.0    0.0064        14      59     102 ..     273     314 ..     263     329 .. 0.75
   4 !    7.5   0.1   0.00099       2.2     184     211 ..     340     367 ..     321     395 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.9e-05
                 EEEEEEESSTTSS-EEE-EEEEE---....-.......---.SEEEEEE.EE--....SSEEEEEEESTT-GGG- CS
       BNR_2 185 aileseSedgGetWskveltslpnpn....sgidavtlkdg.rlllvyN.hesa....pRkpLtvalskdngksw 249
                 ++l   ++d+G+++sk++++ ++ p      g d   + +g +l++v +    +    +R ++ vals d+g++w
  CCG93154.1  70 KLLYLVTKDEGRSFSKPKPIPMEFPPvsghRGNDPQIAASGnQLIAVWTgR--GtgyaGRGKMGVALSLDGGRHW 142
                 566677788888888877666666653233333333333331333333332..1346678888888888888887 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 4.4e-09
                 EEEEESSTTSS-EE----SSSEEEEEEEE.EEETTEEEEEEEE....EEEEEEESSTTSS-EE........E-EEEEE----.......---SEEEEEE CS
       BNR_2 139 llelsddggktWkkgrvveqisgeiqpsilvekdgslvalaRs.rkaaileseSedgGetWsk........veltslpnpnsgidavtlkdgrlllvyN 228
                    +sddggk W+  r ++ +++++ p+ l ++   l +l+R  + +  + ++S+d+Ge+W++         e    p+  sg+ ++   + ++ l+  
  CCG93154.1 186 RAAYSDDGGKNWSANRTIDPKTCTCCPNTLLSSGPWLFVLYRMdTPRDTALARSSDRGESWEQlgsvgdfhWEFQGCPHWGSGMTLLGSGK-EINLFAA 283
                 5679***************999********99999********777799*************96666666655777888888888887555.5555555 PP

                 EE--..SSEEEEEEESTT-GGG----EEE CS
       BNR_2 229 hesa..pRkpLtvalskdngkswkevltL 255
                  +++  + + L v  sk+ g+sw+   +L
  CCG93154.1 284 VQTGklGSRGLYVFQSKNLGRSWSVSRLL 312
                 44444456678888888888888876666 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0064
                 ETTTEEEEEEEEEETT--HHT----EEEESSTTSS----EHHHG CS
       BNR_2  59 dpsgtliLfykvgvsvggwagskitrvtSkDdGktWsaprrlpk 102
                  +++++ Lf  v+ +  g  g      +Sk+ G++Ws  r l+ 
  CCG93154.1 273 GSGKEINLFAAVQTGKLGSRGLY--VFQSKNLGRSWSVSRLLSS 314
                 56789999986666666665555..89**********9987764 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.00099
                 .EEEEEEESSTTSS-EEE-EEEEE---- CS
       BNR_2 184 aaileseSedgGetWskveltslpnpns 211
                 a+il+++S d+G++W+ ++ +s +n  +
  CCG93154.1 340 AQILAAYSLDDGRSWTTPHRMSDKNIWA 367
                 3666666666666666666655555433 PP

>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.056   1.2e+02       2      12 .]      75      85 ..      74      85 .. 0.89
   2 ?    4.6   0.0     0.021        47       3      10 ..     135     142 ..     133     144 .. 0.86
   3 !   14.6   0.2     1e-05     0.023       2      11 ..     189     198 ..     188     199 .. 0.91
   4 !    7.7   0.1     0.002       4.5       2      11 ..     238     247 ..     237     248 .. 0.89
   5 ?    2.7   0.0     0.091     2e+02       3      11 ..     299     307 ..     298     308 .. 0.92
   6 !    8.1   0.3    0.0015       3.3       2      11 ..     346     355 ..     345     356 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.056
                EESSTTSS-EE CS
         BNR  2 yStDgGktWsk 12
                +++D G+++sk
  CCG93154.1 75 VTKDEGRSFSK 85
                799******96 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.021
                 ESSTTSS- CS
         BNR   3 StDgGktW 10 
                 S DgG+ W
  CCG93154.1 135 SLDGGRHW 142
                 99****** PP

  == domain 3  score: 14.6 bits;  conditional E-value: 1e-05
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                 yS+DgGk+Ws
  CCG93154.1 189 YSDDGGKNWS 198
                 9********9 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.002
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                  S D+G++W+
  CCG93154.1 238 RSSDRGESWE 247
                 59*******8 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.091
                 ESSTTSS-E CS
         BNR   3 StDgGktWs 11 
                 S++ G++Ws
  CCG93154.1 299 SKNLGRSWS 307
                 8999****8 PP

  == domain 6  score: 8.1 bits;  conditional E-value: 0.0015
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                 yS D G++W+
  CCG93154.1 346 YSLDDGRSWT 355
                 9********8 PP

>> BNR_3  BNR repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.82   1.8e+03      68     113 ..      52      94 ..      27     142 .. 0.70
   2 ?    1.7   0.1     0.055   1.2e+02     152     210 ..     187     247 ..     176     261 .. 0.66
   3 !   12.3   0.1   3.4e-05     0.075     148     195 ..     340     389 ..     234     395 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.82
       BNR_3  68 kgsdiymlvgkysekagaadaglllvksedggkkwkdteslpetll 113
                 + ++i++l+++   +++++  +ll++  +d+g+++++ + +p ++ 
  CCG93154.1  52 DRDTIHILLEE---ENATEPPKLLYLVTKDEGRSFSKPKPIPMEFP 94 
                 45566666654...44566777888888888888888888887665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.055
       BNR_3 152 iiyssddtkswklskgmsddgCsd.psvvewedgkLmmmtacddgrr.rVYesgdkGesWt 210
                   ys+d++k+w+  + ++ + C+  p  +      L +  + d  r     +s+d+GesW+
  CCG93154.1 187 AAYSDDGGKNWSANRTIDPKTCTCcPNTLLSSGPWLFVLYRMDTPRDtALARSSDRGESWE 247
                 5688888888888888888888742444433344566666666655314567888888885 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 3.4e-05
       BNR_3 148 tvsliiyssddtkswklskgmsddgC..sdpsvvewedgkLmmmtacddg 195
                 +  l  ys dd+ sw+  ++msd++   ++p+vv  +dg L++ t+ +d 
  CCG93154.1 340 AQILAAYSLDDGRSWTTPHRMSDKNIwaTHPRVVATRDGFLILWTEKNDS 389
                 347899*****************9853389**************998876 PP

>> Sortilin-Vps10  Sortilin, neurotensin receptor 3,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.15   3.3e+02      48      80 ..      74     103 ..      52     145 .. 0.55
   2 ?    1.5   0.0     0.044     1e+02      69     110 ..     159     198 ..      74     214 .. 0.61
   3 !    4.3   0.0    0.0063        14       6      59 ..     190     248 ..     185     310 .. 0.58
   4 !    9.0   0.0   0.00024      0.54       3     133 ..     236     382 ..     234     396 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.15
                     EEESSTTSSEEE...EE-SS-BS...S--EEESSET CS
  Sortilin-Vps10  48 yvttDrGktwkk...fklpfkpslsaeplsfhakdk 80 
                     +vt+D+G++++k   + ++f+p       s h  ++
      CCG93154.1  74 LVTKDEGRSFSKpkpIPMEFPPV------SGHRGND 103
                     57888888887733333444443......3333333 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.044
                     ..S--EEESSETTEEEEE.......BTTS-EEEESSTTSSEE CS
  Sortilin-Vps10  69 saeplsfhakdkdwlialgekkeskdckkkayystdggkswk 110
                     + ++l++++    ++++l   +++     +a ys+dggk+w+
      CCG93154.1 159 GFMDLAYDSGGRCHIVWLD--ERNGAVGLRAAYSDDGGKNWS 198
                     3444555555555555552..333333344666666666665 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0063
                     ESSTTSS-EE-GGGGTTEEBE-EEE-STTS--..EEEEEE.....S-EEEEESSTTSSEEE CS
  Sortilin-Vps10   6 SeDeGktwkkvkeklkgeaiqeivvhpfdkkk..aylltd.....skklyvttDrGktwkk 59 
                     S+D Gk+w+   + ++ ++ +   +++  ++    ++l +     ++ l +++DrG++w++
      CCG93154.1 190 SDDGGKNWSANRT-IDPKTCT-CCPNTLLSSGpwLFVLYRmdtprDTALARSSDRGESWEQ 248
                     4444444444432.3333332.333333322211111111333444444444444444443 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00024
                     EEEESSTTSS-EE-GGGGTTEEBE-EEE-STTS--EEEEEE..................S-EEEEESSTTSSEEEEE-SS-BS...S--EEESSE CS
  Sortilin-Vps10   3 vyiSeDeGktwkkvkeklkgeaiqeivvhpfdkkkaylltd..................skklyvttDrGktwkkfklpfkpslsaeplsfhakd 79 
                     + +S+D G++w+++ ++ +  +  e+  +p+  + + ll++                  +  ++ +++ G++w+  +l +++    + ++  +  
      CCG93154.1 236 LARSSDRGESWEQLGSVGD--FHWEFQGCPHWGSGMTLLGSgkeinlfaavqtgklgsrGLYVFQSKNLGRSWSVSRLLSSRG---RFIDLASCG 325
                     6789999999999975433..33468888888888888877777777777777777766666777888888888877777777...344444433 PP

                     TTEEEEE.......BTTS-EEEESSTTSSEEEEESSEEEEEE-S.........TT-EE CS
  Sortilin-Vps10  80 kdwlialgekkeskdckkkayystdggkswkklqesvkkcewakss....kkkeekil 133
                     +    a  e++ +k+ +  a ys d+g+sw++ ++  +k  wa++     ++++  il
      CCG93154.1 326 HALCAAW-EESLDKSAQILAAYSLDDGRSWTTPHRMSDKNIWATHPrvvaTRDGFLIL 382
                     3333333.345555566669999999****9999999999998866664433333333 PP

>> BNR_6  BNR-Asp box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.6      0.11   2.5e+02       4      11 ..     190     197 ..     189     199 .. 0.92
   2 ?   11.0   0.0   0.00016      0.35       3      14 .]     238     249 ..     237     249 .. 0.95
   3 ?   -1.4   0.1       1.6   3.5e+03       2      11 ..     297     306 ..     296     309 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
       BNR_6   4 SeDfGknf 11 
                 S+D Gkn+
  CCG93154.1 190 SDDGGKNW 197
                 99*9**** PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00016
       BNR_6   3 rSeDfGknfkqi 14 
                 rS+D+G +++q+
  CCG93154.1 238 RSSDRGESWEQL 249
                 9*********96 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.6
       BNR_6   2 yrSeDfGknf 11 
                 + S++ G ++
  CCG93154.1 297 FQSKNLGRSW 306
                 7899999999 PP

>> CHB_HEX_C  Chitobiase/beta-hexosaminidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.2   2.7e+03      37      49 ..     132     144 ..     130     156 .. 0.78
   2 ?    6.0   0.0    0.0054        12      34      56 ..     184     206 ..     182     213 .. 0.81
   3 ?   -3.6   0.0       5.3   1.2e+04      40      50 ..     239     249 ..     238     251 .. 0.83
   4 ?    2.4   0.0      0.07   1.6e+02      39      51 ..     346     358 ..     342     376 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.2
   CHB_HEX_C  37 ieYsldggetwqk 49 
                 +  sldgg++w  
  CCG93154.1 132 VALSLDGGRHWFP 144
                 6779*******75 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0054
   CHB_HEX_C  34 GltieYsldggetwqkytayepv 56 
                 Gl   Ys dgg++w++  + +p 
  CCG93154.1 184 GLRAAYSDDGGKNWSANRTIDPK 206
                 88899*********987744655 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 5.3
   CHB_HEX_C  40 sldggetwqky 50 
                 s d ge+w++ 
  CCG93154.1 239 SSDRGESWEQL 249
                 6799****985 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.07
   CHB_HEX_C  39 Ysldggetwqkyt 51 
                 Ysld+g++w++ +
  CCG93154.1 346 YSLDDGRSWTTPH 358
                 *********7654 PP

>> DUF4185  Domain of unknown function (DUF4185)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.1   2.4e+03     126     144 ..     124     147 ..     114     186 .. 0.66
   2 ?    2.3   0.1     0.035        79     129     143 ..     187     201 ..     175     225 .. 0.85
   3 ?    4.1   0.1    0.0099        22     127     148 ..     234     255 ..     204     309 .. 0.77
   4 ?    3.8   0.1     0.013        29     130     178 ..     345     388 ..     331     400 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
     DUF4185 126 ys.....aiaksdDngetWekvpe 144
                 y+     ++a s D+g++W    +
  CCG93154.1 124 YAgrgkmGVALSLDGGRHWFPGGN 147
                 555555578999999999965444 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.035
     DUF4185 129 iaksdDngetWekvp 143
                  a+sdD+g++W+  +
  CCG93154.1 187 AAYSDDGGKNWSANR 201
                 59*********8754 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.0099
     DUF4185 127 saiaksdDngetWekvpesvrt 148
                 +a+a+s+D ge+We+  +   +
  CCG93154.1 234 TALARSSDRGESWEQLGSVGDF 255
                 689***********98766444 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.013
     DUF4185 130 aksdDngetWekvpesvrtnsdtagnenfqqvafvkddgyvYvfgtpng 178
                 a+s D+g++W++ ++    n    ++ +  +v  +++dg++ +++++n+
  CCG93154.1 345 AYSLDDGRSWTTPHRMSDKNI---WATHPRVV--ATRDGFLILWTEKND 388
                 89********88655544444...45454333..347777766666665 PP

>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2     0.009        20      32      58 ..     118     142 ..     102     158 .. 0.84
   2 ?    1.1   0.0      0.16   3.7e+02      49      90 ..     188     229 ..     180     241 .. 0.66
   3 ?    2.6   0.1     0.055   1.2e+02      51      89 ..     347     399 ..     344     402 .] 0.63

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.009
                  EEEEEEE-STT--EEEEEEESSTTSS- CS
  Mo-co_dimer  32 tikGyaysGgGrritrvevsldkGksW 58 
                  t +G +y+G G+  + v +sld+G+ W
   CCG93154.1 118 TGRGTGYAGRGK--MGVALSLDGGRHW 142
                  558999999996..6899********* PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.16
                  EEESSTTSS-EE-EEESSSSS---..SSTTS-TTS-EEEEEE CS
  Mo-co_dimer  49 evsldkGksWklaeieyeedkereakeesretafcwvfweld 90 
                    s d+Gk+W+  +   ++  +   ++  ++  + +v++++d
   CCG93154.1 188 AYSDDGGKNWSANRTIDPKTCTCCPNTLLSSGPWLFVLYRMD 229
                  5688******98876666554444444455556666666655 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.055
                  ESSTTSS-EE-EEESSSSS---..SS..............TTS-TTS-EEEEE CS
  Mo-co_dimer  51 sldkGksWklaeieyeedkereakee..............sretafcwvfwel 89 
                  sld+G+sW++ +   +++   ++ +               ++++  cw + ++
   CCG93154.1 347 SLDDGRSWTTPHRMSDKNIWATHPRVvatrdgflilwtekNDSSQLCWNIVRI 399
                  89******998776665444333333555566666766655566666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 2595.63
//
Query:       CCG93155.1  [L=740]
Description: Outer membrane receptor protein, mostly Fe transport [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-28  100.5  10.9    4.7e-28   99.3  10.6    1.6  1  TonB_dep_Rec  TonB dependent receptor
    8.1e-11   42.4   0.0    1.6e-10   41.5   0.0    1.5  1  Plug          TonB-dependent Receptor Plug Domain
  ------ inclusion threshold ------
       0.37    9.7   2.6       0.19   10.7   0.3    1.6  2  OMP_b-brl_3   Outer membrane protein beta-barrel family


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3  10.6   7.9e-32   4.7e-28      56     452 ..     242     721 ..     184     738 .. 0.67

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 7.9e-32
                   EECECCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.....................................EEEEEEEE......... CS
  TonB_dep_Rec  56 krlrlgydydlddnlswklslraglnYsstdgdsdynnsglgg.....................................grsynrdn......... 106
                    +++lgy+ +  d        r++++Y   +++++ +++++                                              +         
    CCG93155.1 242 LNVNLGYRIS-PDA-----ENRVYFTYV--NQREKLTSTLTEEqmftnptfcnpaytlmdlrryidllrvadrvalrldpD------Tsltlgvvwd 324
                   3444444444.222.....333333333..222222222222233444455545555555555555444444554444331......1333333333 PP

                   ..CEEE........EEEEEEEEEEEEEEEE.EE..EEEEEEEEEEEEEEEECCBEESCCTCCSEEEEEEEEEE...E...EEEEEEEEEETTEEEEE CS
  TonB_dep_Rec 107 ..dyyg........lgnvlaaeldlngdlw.fG..snladgldyrklsddgydaydplnpsgdasdsvdrdsy...g...lyaqdnikltdrltltl 184
                     ++y         ++n++a++++l+g  + fG   +   gl  + +     +a+   +ps  a++ ++ +sy   +   ly q +++lt++l l +
    CCG93155.1 325 nsQFYHpiftflhiNYNDFALPIQLQGSSTlFGipETHIIGLLPQGMFG-EQTAFAMKFPS-PAQGPFSGSSYyiaAnvpLYMQESLQLTKQLALIA 419
                   3333335555666777777777777555334555533333333332222.34444444444.2222223333312123338********99****** PP

                   EEEEEEETTCSSSS................EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEECCCCCEEEEC....STT---E CS
  TonB_dep_Rec 185 GlRydhysvfgkdlrag.............afsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggsngaggalsng....npdLkPE 264
                   G   d++ +++ +++               ++sr++++ +P++gl y++t +++++ ++sr f  P+++el+++      ++++ g       L++E
    CCG93155.1 420 GMQLDYSLRSAETYNQVplgphgpqvfqdnSSSRDYYGINPKLGLLYQATKGVQFYTNFSRVFEPPNFTELIPA-----VTIIPRGqamfP--LQAE 509
                   ****99999988888889999999999999899999*************************************4.....444444434433..9*** PP

                   EEEEEEEEEE..EEETTEEEEEEEEEEEEEEEEEEESSSSCSTTTCS.........EEEEEEEEEEEEEEEEEEEEE......EETTEE........ CS
  TonB_dep_Rec 265 tsknyelGlk..ldddrlnltlayFridiknfittdpdgpslgglgd.........fqyqNvgkarikGvElelsyr......ltpgWg........ 336
                   t+++ ++G +  +   rl+++++y+r   +++i  ++ +    + ++            +N+  +  +GvE +   +      l p +         
    CCG93155.1 510 TGTSIDIGTRgvW--KRLQWDISYYRYWMDDQILLYYPAAVIAQVTNpaaitapfvAFPFNASPTVLQGVETGF--TfilakrLLPFFLsgtsdldq 602
                   **********554..79*********************999999999*********9999**999*******55..433333322222245555558 PP

                   EEEEEEEEEEEEECECEEECTTTTSSTTEESEEEEEEEEEECSEEEEEEEESEEEEEEECCSSEEEEECECCEEEE--EEEEEEEEEEEES..SSEE CS
  TonB_dep_Rec 337 lglsgggytYydagddsdaddggnplpnvPkhtanlgltYkfpaggWgaglllagarYvavggrrygdaantfrrvpgYtlldlslgYklp..knlt 431
                   l l+ + + +++ +++ d+ ++ n+lp  P +++++ l Y++  +g+      +g +  a+ + +  d+ant+  vp++++l ++lgY      +++
    CCG93155.1 603 LLLNVN-FMWSNFRFAHDPVYDHNRLPLFPIDYLQAQLLYQH-PSGFY-----IGPNVEASMTPYPVDYANTL-FVPSWAILGFRLGY--IspHGWS 689
                   777888.889999999************99999998888944.34444.....25555544555788999***.**************..44799** PP

                   EEEEEESTTETCSCEEESTT...........T CS
  TonB_dep_Rec 432 lslgvnNLfdkryyassgyy...........g 452
                   +++ ++N++++ y+a+++             +
    CCG93155.1 690 VYFDARNITNEIYAATATPVtnamlaggtaaQ 721
                   **********4344443333445555555444 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   2.7e-14   1.6e-10       3     107 ..      66     177 ..      64     178 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 2.7e-14
                 GCCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-G.......GCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEES CS
        Plug   3 kdtpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgs.......nrvlvlvDGvpianggsgagdlssidpedierievlkG 94 
                 +++pg+v+ + a   ++   + l dal + pg+ +++s g ++  ++siRG+g         ++lvl DG+p++  ++   ++s+idp +++ ++v +G
  CCG93155.1  66 EQVPGAVNFIPASSYRRGRLQGLRDALLNQPGIYIQESWGEPNDYRLSIRGTGLqsptwtlPSILVLQDGLPWTMADGEMLGFSNIDPLAMQYVQVWRG 164
                 7899************************************************9999******************************************* PP

                 SCHCTTSSTGSSE CS
        Plug  95 pasalyGsdaigG 107
                 + + ++G+   gG
  CCG93155.1 165 ADALQFGAVDRGG 177
                 *******987777 PP

>> OMP_b-brl_3  Outer membrane protein beta-barrel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1      0.68     4e+03     163     183 ..     244     264 ..     237     277 .. 0.47
   2 ?   10.7   0.3   3.1e-05      0.19     117     200 ..     403     496 ..     390     503 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.68
  OMP_b-brl_3 163 vslsyklndknklqlslsYyr 183
                  v+l y ++++ + ++ ++Y +
   CCG93155.1 244 VNLGYRISPDAENRVYFTYVN 264
                  333333333333333333322 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 3.1e-05
  OMP_b-brl_3 117 aYasyskklg.kfsykaGlRaEytnikgesstt............nesfkknyfnlfPsvslsyklndknklqlslsYyrriinRPsisqLnPfrny 200
                  +Y++ s +l  ++ + aG+ + y+  ++e++++            ++s +++y  + P + l y+ ++  ++  +  ++ r  + P++ +L P +++
   CCG93155.1 403 LYMQESLQLTkQLALIAGMQLDYSLRSAETYNQvplgphgpqvfqDNSSSRDYYGINPKLGLLYQATKGVQFYTN--FS-RVFEPPNFTELIPAVTI 496
                  79999999965899**********9999977744444444444448899******************98866555..55.567*********98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.53
# Mc/sec: 4214.64
//
Query:       CCG93156.1  [L=438]
Description: UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-26   91.1   0.0    2.2e-23   83.3   0.0    2.3  2  Mur_ligase_M  Mur ligase middle domain
    3.7e-05   23.9   0.0    0.00026   21.2   0.0    2.3  2  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   2.4e-27   2.2e-23       1     127 [.     114     232 ..     114     245 .. 0.92
   2 !    5.8   0.0    0.0014        12     172     191 ..     253     272 ..     235     273 .. 0.79

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 2.4e-27
                   EESSS-HHHHHHHHHHHHHCTEEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCH.CBESEEEE---TSTTHHHHSSHHHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvgttnneiglpktlaemekkeaeyavlEvsshglgekrlegl.lkpdvavitnispdHldfhgtlenyae 96 
                   +TG++GK+Ttt+li+++l+++g  + + g+    ig+p + +    +e  +avlE+ss+     +le +  +p +a+++n+ ++Hl +hg++e+y  
    CCG93156.1 114 ITGSKGKSTTTSLIHHLLKTNGLEAYIGGN----IGVPPFHLIPFASEKAIAVLELSSY-----QLEYCrHSPSIAIWLNLYQEHLNYHGSFEAYSL 201
                   8****************************9....****999999999************.....55555589************************* PP

                   HHHHHHHTSETTCEEEEETTSC...CHHHHH CS
  Mur_ligase_M  97 aKaelferlkeegiavinaddpyakelikkl 127
                   aK+++ + +++e+++++nad+p+++e+ + +
    CCG93156.1 202 AKSNIARFQSSENFFLYNADNPSLSEFLASI 232
                   **********************888887765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0014
                   EEESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M 172 ieipllGkhnvyNalaaiaa 191
                    +++l+G+hn  Nal a+++
    CCG93156.1 253 SRLHLPGEHNKRNALFAALT 272
                   679************99876 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.23     2e+03      33      59 ..       4      26 ..       2      51 .. 0.68
   2 !   21.2   0.0   2.9e-08   0.00026       2      54 ..     294     341 ..     293     364 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.23
                  HHHHHSSSSEEEEEEEESTT.CCSCHC CS
  Mur_ligase_C 33 alreiapdkrlilvfgpggelgertrt 59
                  a+r+++  +++il++g g e g   +t
    CCG93156.1  4 AIRDYFL-GKKILIWGLGLE-G--RAT 26
                  6777775.899999997777.3..333 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 2.9e-08
                   TTSSEEEEETTTEEEEEE.T--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.C CS
  Mur_ligase_C   2 kgRlevvgeadgvtvidD.yahnpdslsaalkalreiapdkrlilvfgpggelg 54 
                   ++Rle+v + +gv +++D  a+ p+++ a+++a+    p+ +  l++g g+++g
    CCG93156.1 294 PHRLEYVATIEGVSYYNDsIATVPEATLAGIEAI----PNVE-SLILG-GQDRG 341
                   8*********************************....5333.34555.45755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2950.07
//
Query:       CCG93157.1  [L=477]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3267.85
//
Query:       CCG93158.1  [L=247]
Description: Nucleoside-diphosphate-sugar pyrophosphorylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-34  117.3   0.0    9.3e-34  117.1   0.0    1.0  1  NTP_transferase  Nucleotidyl transferase
      3e-09   37.4   0.0    3.7e-09   37.1   0.0    1.2  1  NTP_transf_3     MobA-like NTP transferase domain
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.036   14.0   0.0    1.3  1  CTP_transf_3     Cytidylyltransferase
      0.022   14.5   0.0      0.029   14.1   0.0    1.2  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1   0.0   2.1e-37   9.3e-34       2     243 ..       3     244 ..       2     247 .] 0.88

  Alignments for each domain:
  == domain 1  score: 117.1 bits;  conditional E-value: 2.1e-37
                      EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHH.TT-SEEEEEEETTTHHHHHH.HHTTSGGGTSEEEEEEESS--....BGGHH CS
  NTP_transferase   2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlan.sgieeiivvltqehsflvee.qlkegskfgvevlialepegk....gtAdA 89 
                      a++L+ G+ tRL+PLt +++k l+ v+gk +++++ + +l++ s+ +ei+vv++++    + e + + ++++ v+  i++ + g     +  +A
       CCG93158.1   3 ALLLSAGYATRLYPLTLNQPKALLSVAGK-PILDYLMDKLFElSSLDEIYVVTNHKFYGHFVEwKHRYTEEALVKFPIVVLDDGStteeNRLGA 95 
                      789**************************.***********999****99999987665554415555666667777777666666667999** PP

                      HHHTHHHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTSBEEEEECS-SSHSHCSEECCSEEEEE CS
  NTP_transferase  90 valaaelledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGvieadeegrverfvEKPkeakaselassGiYvfn 183
                      +  ++  +e+ + ++ ++vL++D l+   ++ +v +a+ k++  + ++ +++++ a++yGv+ +d +g+   f+EKP++++ ++++++ +Y+f 
       CCG93158.1  96 IGDIQFTIERMQLQDDLIVLASDNLFCASLTSFVSEAKRKNSPLLGVYNLKDKQLASKYGVVSFDANGKLSYFEEKPQNPP-TSWVAMALYFFP 188
                      ***9999999999999**************************99*************************************.88********** PP

                      TTHHHHHHH.CCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHHHH CS
  NTP_transferase 184 sevllflak.dleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldslleane 243
                      +++l    k +l+e  + +d+ + +++ +  +++v +    ++   W D+G+ + l  an 
       CCG93158.1 189 KSILSLV-KtYLREQ-KNTDQPGRFIQWLYPQMDVYV-WELTG--LWFDIGSKETLEAANL 244
                      ***9999.7588777.677888899999999987765.47777..6*******99999886 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   8.3e-13   3.7e-09       1     112 [.       3     133 ..       3     212 .. 0.75

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 8.3e-13
                   EEEEEESS-TTT.....TTTHHHHCCCCCCHHHHHHHHHCTT..-CEEEEECSHC...........HHHHHHTTCTS-EEE-....TTSS-SHHHHH CS
  NTP_transf_3   1 aviLAGGrSsRm.....ggdKallplggkpllervldalraa.gvdevvvvggde...........evlaalarlgvrvved....edpgkgplasl 76 
                   a++L +G ++R+     +++Kall ++gkp+l++++d+l ++ ++de++vv++++             ++al ++++ v+ d    e+   g ++ +
    CCG93158.1   3 ALLLSAGYATRLypltlNQPKALLSVAGKPILDYLMDKLFELsSLDEIYVVTNHKfyghfvewkhrYTEEALVKFPIVVLDDgsttEENRLGAIGDI 99 
                   689*********8888889**********************9558*********8666666555554444777778888777655455567999999 PP

                   HHHHHHH.SSSCEEEEETT-TT--HHHHHHHHHCHH CS
  NTP_transf_3  77 aaalraaadadavlvlacDmPlltpelverllaaaa 112
                   +  +++ + +d ++vla D  +   + +  ++ +a+
    CCG93158.1 100 QFTIERMQLQDDLIVLASDNLFC--ASLTSFVSEAK 133
                   99999999999999999999885..45556666555 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     8e-06     0.036      16      56 ..      23      63 ..      21      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8e-06
                  GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES-HHHHHHH CS
  CTP_transf_3 16 KnlldlggkpliayvleaalkskafekvivaTDseeiknva 56
                  K+ll+ +gkp+++y+++++ +   +++++v T ++ +  ++
    CCG93158.1 23 KALLSVAGKPILDYLMDKLFELSSLDEIYVVTNHKFYGHFV 63
                  99*********************************997776 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   6.4e-06     0.029       3      63 ..       3      66 ..       1     111 [. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.4e-06
                EEEECTTSSCTT...-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGGHHHHHHHH CS
        IspD  3 vvipAAGsGkRm...kaglpKqflelkgqtllehtvdallaskavdkivvvvseddteefeqll 63
                +++  AG  +R+     ++pK++l+++g+++l   +d l + +++d+i vv +++  ++f +  
  CCG93158.1  3 ALLLSAGYATRLyplTLNQPKALLSVAGKPILDYLMDKLFELSSLDEIYVVTNHKFYGHFVEWK 66
                677889999996333689*********************************9998777776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1808.84
//
Query:       CCG93159.1  [L=587]
Description: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-98  329.0   0.0    3.3e-98  328.4   0.0    1.2  1  PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
    1.3e-19   70.5   0.1    3.4e-19   69.1   0.1    1.8  1  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
    1.8e-18   66.0   0.2      4e-18   64.9   0.2    1.6  1  PEP-utilizers    PEP-utilising enzyme, mobile domain
     0.0021   17.2   0.1     0.0062   15.7   0.0    1.7  2  HpcH_HpaI        HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.4   0.0  7.5e-102   3.3e-98       7     291 ..     263     546 ..     259     549 .. 0.98

  Alignments for each domain:
  == domain 1  score: 328.4 bits;  conditional E-value: 7.5e-102
                      CCCCCCCHCCCXBCEEEEEESSCHHHHHHHHCTXSSEEEEEHHHHCTTSCCHHHHHHHHHHHHHHHHHTTTSEEEEEXXXSSCCGGSGGCHHHH CS
  PEP-utilizers_C   7 lktllavtkdgkkikvlaNidtpedaekalengaeGiGLlRtEflfmareelpteeeqaeaykkvleamngrpvvvRtlDiggdkelpelkeep 100
                      + ++la   dgkk+ v aNi+ ped+  ++++ga+GiGL+RtEflf++ +++p+eeeq+eay++++   +++ vv+RtlD g+dk +++l    
       CCG93159.1 263 ILHQLAESLDGKKVYVSANIEFPEDIPVMTKSGADGIGLYRTEFLFLKANHPPSEEEQYEAYRNAAVHAKPHQVVIRTLDLGADKIVSYLPWRW 356
                      56789999**********************************************************************************9999 PP

                      .XSXGGGSSXTHHHHCCSHHHHHHHHHHHHHHCCCCEEEEEESSXXSHHHHHHHHHHHHHHHHHHHHCTCTXXTTXEEEEEEXSHHHHHTHHHH CS
  PEP-utilizers_C 101 eevNPmlGfRgirlglsepelfetqlrAllrasaagkleimlPmvasveeleeakkiieevkeelekegvkkkkkvkvGiMiEvpsaalladkl 194
                      +e+NP+lG Rgir++l+e+e+f+tqlr++lra+++g++ +m+Pm++ + e++ ak++ie++k+el ++gv +  ++k+G+MiE+ps  l+a++l
       CCG93159.1 357 MEENPVLGSRGIRVSLKEKEMFKTQLRSILRAAVEGNVAVMFPMITDLTEIIAAKEMIEQTKQELFHQGVPFG-EIKCGVMIETPSSCLIAEHL 449
                      ********************************************************************98886.7******************* PP

                      CTTSSEEEEXHHHHHHHHHTXXCCCHCHHHHSXTTTCHHCCCHHHHHHHHHHCCXEEEEESCCCCSCCCHHHHHHCTXSEEEEXGGGHHHHHHH CS
  PEP-utilizers_C 195 akevdFfSiGtNDLtQytlavdRdneevaklydplepavlrlikevikaaeekglkvgiCGelagdpsavellvglGldelSmsaasvpaaraa 288
                      a+ vdFfSiG+NDL+QytlavdR+n++v +ly+p++p+vl li++  +aa+++++ +giCGe+++d   +++++ +G+  lSm +  +p++++a
       CCG93159.1 450 AQTVDFFSIGSNDLIQYTLAVDRMNNNVEYLYQPFHPSVLLLIRMAAEAAHRRNIPIGICGEISSDLYLLPFFLAVGIHRLSMGSVFIPRTKKA 543
                      *********************************************************************************************9 PP

                      HHC CS
  PEP-utilizers_C 289 laq 291
                      ++ 
       CCG93159.1 544 IRF 546
                      985 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.1   7.6e-23   3.4e-19       2     116 .]      11     134 ..      10     134 .. 0.92

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 7.6e-23
                      -EEEE-SEEEEEEE......---.-----G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH....T-HH.HHHHHHHHHHHHT-HHHHHHHHHHHH CS
  PEP-utilisers_N   2 GiaaspGiaiGkav......eveveeeeveaedveaelerleeAlekvreelealaeka....lgee.eaaifeahlmlleDpelleeveerIr 84 
                      G +aspG+ +G a+      e  ++e+++e++++ +ele++e+A+ +++e+l ++++++    l  + e+++f+++++ leD+++l++v+e+++
       CCG93159.1  11 GCPASPGLSFGSALilqeehE-IIRERKIEPHEIRSELEKFEKAILQTKEDLLKAKASLcgmgL--TvEESLFDVQILALEDDMILQAVKEKLE 101
                      99**************99852.567999**************************9999999652..33578*********************** PP

                      HHT--HHHHHHHHHHHHHHHHHHT.T-HHHHHH CS
  PEP-utilisers_N  85 egglnaeaAveevveefaaqfeal.ddeylreR 116
                       + +++ea  +  +++f+a ++++ +deylreR
       CCG93159.1 102 RDLVCVEAVYQNIIRSFIAGLNKVgEDEYLRER 134
                      ************************99******9 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.2   8.8e-22     4e-18       4      73 .]     161     232 ..     158     232 .. 0.96

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 8.8e-22
                    S-EEEEES---HHHHTTS-..GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.HH--TEEEEEETTTT CS
  PEP-utilizers   4 egvILvaeetspsdiagld..kaaGivterGGmtSHaAivArelgiPaVvgvgeatielkegdlitvDgstG 73 
                    ++ IL+a+ +  sd++ ld  +++Givte  ++tSHa i+Ar+ giPa+vg++++++++++g+++ +Dg++G
     CCG93159.1 161 SPRILIADFLMLSDLVSLDlrHVSGIVTEDRSRTSHAVILARSQGIPAIVGIQGILHKVINGQTVLIDGFKG 232
                    678****************99*************************************************98 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.65   2.9e+03     159     191 ..     310     341 ..     309     352 .. 0.73
   2 !   15.7   0.0   1.4e-06    0.0062      63     155 ..     367     464 ..     358     501 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.65
                 T-TTSTTSHHHHHHHHHHHHTTHCEEEEEEE.E CS
   HpcH_HpaI 159 gtkrspegtevldareriltaaraagiaaldtv 191
                 +++  p+++e ++a ++ + +a++ ++ ++ t+
  CCG93159.1 310 KANHPPSEEEQYEAYRNAAVHAKPHQV-VIRTL 341
                 566677888888888888888888888.55554 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.4e-06
                 EEE-SSTTHHHHHHHGG....HHHTTSSEEEESS--SHHHHHHHHHHTSHTTTS---...HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHH CS
   HpcH_HpaI  63 vVRvnsldselikqdle....vldlgaqvvlvPkvetaeealevvsalrepekgirg...anketrllaqiEsaegvknaeeIaavegldgvflGaeDl 154
                  +Rv+  ++e++k +l+    ++ +g  +v++P+++   e++++++++++ +++        +e++  + iE+    + ae  a+   +d   +G++Dl
  CCG93159.1 367 GIRVSLKEKEMFKTQLRsilrAAVEGNVAVMFPMITDLTEIIAAKEMIEQTKQELFHqgvPFGEIKCGVMIETPSSCLIAEHLAQ--TVDFFSIGSNDL 463
                 69**************9944444455668***********************997654557899***********9999999985..488899999998 PP

                 H CS
   HpcH_HpaI 155 s 155
                  
  CCG93159.1 464 I 464
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4032.61
//
Query:       CCG93160.1  [L=105]
Description: Phosphotransferase system HPr-related protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-30  103.0   0.6    8.9e-30  102.8   0.6    1.1  1  PTS-HPr   PTS HPr component phosphorylation site


Domain annotation for each model (and alignments):
>> PTS-HPr  PTS HPr component phosphorylation site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.6     5e-34   8.9e-30       3      81 ..      20      98 ..      18      99 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 5e-34
                EEEEEESTCCCSHHHHHHHHHHHTTSSSEEEEEE....EETTSHHHHHHCTCSTT-EEEEEEESTTHHHHHHHHHHHHC CS
     PTS-HPr  3 kkvtiknekGlhaRpAamlvqaasefksevtlekkdkpvnaksilglmsLgvkkGeevtvsaeGedeeealealaelle 81
                ++v ++n++G+haRpAam+v++a++++s++++ek +++vn+ksi+g+m L+++ G++++++a G+d+++a+eal++l++
  CCG93160.1 20 REVLVQNKLGIHARPAAMFVKIANRYESDIKVEKDGEEVNGKSIMGVMLLAASMGSKLKITAVGPDAQQAVEALVNLVN 98
                799******************************966****************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 862.33
//
Query:       CCG93161.1  [L=326]
Description: Serine kinase of the HPr protein, regulates carbohydrate metabolism [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-59  198.9   0.0    5.7e-59  198.5   0.0    1.1  1  Hpr_kinase_C  HPr Serine kinase C-terminal domain
    7.6e-35  119.7   0.0    1.2e-34  119.0   0.0    1.4  1  Hpr_kinase_N  HPr Serine kinase N terminus
     0.0012   18.6   0.0     0.0023   17.7   0.0    1.3  1  DRTGG         DRTGG domain
  ------ inclusion threshold ------
      0.017   14.9   0.1       0.98    9.2   0.1    2.6  2  AAA_29        P-loop containing region of AAA domain
      0.022   15.0   0.0        0.2   11.9   0.0    2.4  2  PucR          Purine catabolism regulatory protein-like famil


Domain annotation for each model (and alignments):
>> Hpr_kinase_C  HPr Serine kinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.5   0.0   1.6e-62   5.7e-59       3     170 ..     147     314 ..     145     315 .. 0.99

  Alignments for each domain:
  == domain 1  score: 198.5 bits;  conditional E-value: 1.6e-62
                   CS-EEEEESEEEEETTEEEEEEESTCHHHHHHHHHHHTTT-EEEEESSEEEEEETTE.EEEEE-TTTTTEEEETTTEEEEHHHHH-GGGB-SEEEEE CS
  Hpr_kinase_C   3 laeetsvhGvlvdvygvGvLitGesgvGKselaleLikrghrLvaDDaveikridektlvGrapellkhllevrglGiidvkklfGaeavrekkeie 99 
                   +a++t+  G++vd+ g+GvLi+G sg+GKse+ l L++rg+ LvaDD+ +i+  + ++lv++ap++ + ++evrg+Giidv++lfG++a+r +k+++
    CCG93161.1 147 FAPRTNEQGSMVDIQGIGVLIKGPSGIGKSECVLSLVERGYSLVADDVTTIYCLEGRELVAKAPDISRFHMEVRGIGIIDVTTLFGLRAIRPEKKLD 243
                   899********************************************************************************************** PP

                   EEEEEESTT---TTTSTTSS-EEEEETTEEEEEEEEE--TTS-HHHHHHHHHHHHHHHHTT--HHHHHHHH CS
  Hpr_kinase_C 100 lvveLeewekkkeydrlgleeetkeilgvkvpkvtipvkpgrnlaviieaaalnlrlkkkgydaakeleer 170
                   +v +L+ewek +e++r+ le++++ei++++vp+vtip++pgr+la+++e+aal+++l+++gy+aa e++e+
    CCG93161.1 244 MVATLKEWEKGEEIERVHLEQDYYEIFNIRVPHVTIPIRPGRDLATLVEVAALDQKLRSMGYNAAAEFNEK 314
                   ********************************************************************998 PP

>> Hpr_kinase_N  HPr Serine kinase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   0.0   3.5e-38   1.2e-34       1     125 []      16     143 ..      16     143 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.0 bits;  conditional E-value: 3.5e-38
                   EEHHHHHHHT....TEEEEEGGTT-E...E-EECEEE-HHHHTTS--S-.--EEEEE-HHHHHHHHT-HHHHH..HHHHHHTT--S-EEEETTT--- CS
  Hpr_kinase_N   1 vtvkeliekl....klelllgeegldrreitssdinrpgleLaGffdyfdperiqilGktElsYleklseeerkerleklfskkipciiltrglepp 93 
                   +t+ e+++++    +l+l+ g++g +r  i++ +inrpgl+L+G++ yf+++r+qi+G  E+sYl++l   e++er+++lf kkipc+il+rg++pp
    CCG93161.1  16 ITIGEFYKQHgellHLSLVAGKKGFNRL-IREGSINRPGLQLSGYLRYFPKQRVQIIGWGEMSYLKSLPIAESEERIRQLFLKKIPCLILSRGMTPP 111
                   67888888887655688888*****888.******************************************************************** PP

                   HHHHHHHHHH---EEEESS-HHHHHTTHHHHH CS
  Hpr_kinase_N  94 eellelaeeygvpllrtklstsefiaeliryL 125
                   + +++ aee gvpl++++l+t ++i++++ +L
    CCG93161.1 112 SFIVKQAEELGVPLFVSQLHTMRLINTVTICL 143
                   ***************************99876 PP

>> DRTGG  DRTGG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.4e-07    0.0023      54     100 ..      91     137 ..      82     141 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 6.4e-07
                 HHHHTT-TEEEEEEETT----HHHHHHHHHHT--EEE-SS-HHHHHH CS
       DRTGG  54 qlaaleagiaalilTgglepseevlklaeeaglpvlsveldtfttak 100
                 + ++ +++i +lil  g++p++ ++k aee+g+p++ ++l+t+  ++
  CCG93161.1  91 IRQLFLKKIPCLILSRGMTPPSFIVKQAEELGVPLFVSQLHTMRLIN 137
                 556677889*********************************98776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.034   1.2e+02       2      22 ..      66      87 ..      66      92 .. 0.86
   2 ?    9.2   0.1   0.00027      0.98      18      36 ..     157     176 ..     151     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.034
      AAA_29  2 krlqlvNWgtfdg.htieidlk 22
                +r+q++ Wg+++  ++++i ++
  CCG93161.1 66 QRVQIIGWGEMSYlKSLPIAES 87
                699********99999998765 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00027
      AAA_29  18 eidlkg.atlltGpsGsGKS 36 
                 ++d +g  +l+ GpsG GKS
  CCG93161.1 157 MVDIQGiGVLIKGPSGIGKS 176
                 45556878***********9 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.7e-05       0.2      10     101 ..      31     129 ..      24     141 .. 0.74
   2 ?   -1.7   0.0      0.95   3.4e+03      20      34 ..     215     229 ..     193     251 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.7e-05
        PucR  10 aakvvaGkagldrpVrwvhv....levpdiaellrggeLllttglalkd....dpealaelvrelaeagvaaLviklgreipeelieaadelglPliel 100
                    +vaGk+g +r +r  ++    l++    +++ ++ + ++    ++       ++ +e +r+l  +++ +L++  g + p  +++ a+elg+Pl++ 
  CCG93161.1  31 L-SLVAGKKGFNRLIREGSInrpgLQLSGYLRYFPKQRVQIIGWGEMSYlkslPIAESEERIRQLFLKKIPCLILSRGMTPPSFIVKQAEELGVPLFVS 128
                 4.78888888888888888855555555555666666666655555433233455677899*****************999***************986 PP

        PucR 101 p 101
                 +
  CCG93161.1 129 Q 129
                 5 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.95
        PucR  20 ldrpVrwvhvlevpd 34 
                  + +Vr + +++v+ 
  CCG93161.1 215 FHMEVRGIGIIDVTT 229
                 345566666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2298.93
//
Query:       CCG93162.1  [L=369]
Description: Anthranilate/para-aminobenzoate synthase component I [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-75  254.1   0.0    2.2e-75  253.6   0.0    1.2  1  Chorismate_bind  chorismate binding enzyme


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.6   0.0   1.2e-79   2.2e-75       3     258 .]     104     356 ..     102     356 .. 0.96

  Alignments for each domain:
  == domain 1  score: 253.6 bits;  conditional E-value: 1.2e-79
                      CHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCT.BSSSEEEEEEETTEEEEEEESSEEEEEETTSEEEEECEEEEEEHS CS
  Chorismate_bind   3 edYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrar.npapysflleledsellgaSPElllkveggrrietepiaGTrarg 95 
                      + Ya++v+k+ke+i+agd+y ++l+r+++ +   + dpl++++ + ++ +     ++l+   ++l++aSPEl+l+++g+ r++++pi+GTr+r+
       CCG93162.1 104 QGYASMVTKAKEYIAAGDIYVINLARQISCQ--WEADPLSVLAFFLHEgKGLGGICYLDDAPQTLVCASPELFLQINGK-RMTSKPIKGTRPRN 194
                      78*****************************..7789999998776663777777888888899*************77.************** PP

                      SSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESHHH CS
  Chorismate_bind  96 ktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkkr 189
                       +   ++++  +l+++eKe+aE lmi+dl+rnd+gkv++ g+vkv++l +++++++++h+  tieg l++  +++d++ + fP+g+vtG+Pkkr
       CCG93162.1 195 GDRVSNRKNLLDLVQSEKEKAELLMITDLVRNDFGKVCHYGTVKVSQLWRITAHPHLYHMHCTIEGILSSAYDMIDAFLSNFPGGSVTGTPKKR 288
                      ********************************************************************************************** PP

                      HHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 190 ameiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      a+eii+elE+ +Rg+Y+Ga+gy+ +++ a ++ +IR +v++++ +++ +G+GI+ dSdp aEyeEt++K
       CCG93162.1 289 AIEIIKELEPNPRGLYSGAIGYFMPQE-AAFTMAIRLVVIEKGVATFHVGSGITYDSDPYAEYEETEQK 356
                      ************************885.9**************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2953.11
//
Query:       CCG93163.1  [L=386]
Description: Chaperone protein dnaJ [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-43  146.0   0.0    1.1e-42  145.7   0.0    1.1  1  DnaJ_C           DnaJ C terminal domain
    1.5e-30  105.1   1.4    1.5e-30  105.1   1.4    1.8  2  DnaJ             DnaJ domain
    6.1e-12   45.7  11.0    1.1e-11   44.9  11.0    1.5  1  DnaJ_CXXCXGXG    DnaJ central domain
    0.00013   21.9  15.6      0.006   16.5   4.6    3.1  2  Anti-TRAP        Tryptophan RNA-binding attenuator protein in
  ------ inclusion threshold ------
       0.13   12.6   3.7        5.3    7.4   0.2    2.6  2  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
       0.67   10.1   4.0       0.33   11.1   0.5    2.2  3  DUF2318          Predicted membrane protein (DUF2318)
        1.2    9.4   3.3        2.9    8.2   0.2    2.3  2  DUF3365          Protein of unknown function (DUF3365)
        1.3    9.3  16.1         10    6.4   0.1    4.3  4  DUF5351          Family of unknown function (DUF5351)
        6.5    6.2  13.6       0.85    9.0   1.8    2.8  3  zf-TFIIB         Transcription factor zinc-finger


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.7   0.0   5.4e-46   1.1e-42       2     148 .]     134     346 ..     133     346 .. 0.96

  Alignments for each domain:
  == domain 1  score: 145.7 bits;  conditional E-value: 5.4e-46
                 EEEEEE-HHHHHH-.EEE.EEEE.....................................................................TEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx..............................................................xxxxxxxxxxx RF
      DnaJ_C   2 eveleisleelykGktkkikikrnvi..............................................................kkekktlevki 38 
                 + +l+is+ee++ G++k+i++++ ++                                                              +k++ +l+vki
  CCG93163.1 134 RCDLKISFEEAALGCEKEITFTKLDTcpgcegrgyapgsgmiscpvcsgsgqirsskgfftiaqtcprchgagaiiekpclrchgegrIKQTAQLKVKI 232
                 679********************999************************************************************96656669***** PP

                 -TT--TT-EEEETT-SSSS....S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-SS-EEEEEE...--TT-EEEETT-S-EET.. CS
                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx RF
      DnaJ_C  39 paGikdgqkirlegeGdeeg..gepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptldgkvklki...tqpgevlrikgkGmpklkk 132
                 p+Gi++g ++rl+g+G+++   ++pGDl+v+i+v ph+ F+r+gndl++e++is+a+a+lGg+++vptl+g+  l+i   tq+g+++r+++kG+ + + 
  CCG93163.1 233 PPGIDEGYRLRLSGHGESGIagAPPGDLYVVIHVMPHELFSRQGNDLLCEMPISFAQAALGGEISVPTLTGHEILRIppgTQSGKIFRLRHKGIADIH- 330
                 ****************955566***************************************************************************7. PP

                 .TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxx RF
      DnaJ_C 133 pgkrGdlyvevkvefP 148
                 +++ Gdl+v+v+ve+P
  CCG93163.1 331 GHGIGDLLVKVHVEVP 346
                 ***************9 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   1.4   7.7e-34   1.5e-30       1      63 []       7      69 ..       7      69 .. 0.99
   2 ?   -2.5   0.1         3     6e+03      27      42 ..     367     382 ..     362     384 .. 0.66

  Alignments for each domain:
  == domain 1  score: 105.1 bits;  conditional E-value: 7.7e-34
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                dyYe+Lgv++ as++eIkkaYrklalkyHPDknp++++aee Fk i+eAyevLsdpekR++YD
  CCG93163.1  7 DYYELLGVERGASTEEIKKAYRKLALKYHPDKNPGNKQAEELFKDISEAYEVLSDPEKRAAYD 69
                8*************************************************************9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3
                 HHSTTTSCCHHHHHHH CS
        DnaJ  27 kyHPDknpkdpeaeek 42 
                 k HP +++  ++a++ 
  CCG93163.1 367 KTHPQQESFFEKAKRF 382
                 7888887555555554 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9  11.0   5.6e-15   1.1e-11       1      67 []     160     220 ..     160     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 5.6e-15
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgk.kktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C+ C+G+g ++g+ + +C+ C+GsG++r+++   g+f+  + +tCp+C+G G +i  +++C +C+G+g
     CCG93163.1 160 CPGCEGRGYAPGSgMISCPVCSGSGQIRSSK---GFFT--IAQTCPRCHGAGAII--EKPCLRCHGEG 220
                    9*******999887899********877776...3444..679************..779******97 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   4.6     3e-06     0.006      12      47 ..     159     191 ..     152     196 .. 0.91
   2 !    9.7   3.0   0.00039      0.78      11      43 ..     197     223 ..     193     230 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3e-06
                 E-TTTTTTSEETTE......E-TTTTTSSEEE-HHH CS
   Anti-TRAP  12 kCdaCngsGkiepeeprasleCPkCsGkglipTaqG 47 
                 +C+ C+g G +++    + + CP CsG g i   +G
  CCG93163.1 159 TCPGCEGRGYAPGS---GMISCPVCSGSGQIRSSKG 191
                 7*************...999*********9988777 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00039
                 EE-TTTTTTSEETTE......E-TTTTTSSEEE CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkglip 43 
                 ++C+ C+g+G i  +      +C +C G+g i 
  CCG93163.1 197 QTCPRCHGAGAIIEK------PCLRCHGEGRIK 223
                 68***********99......*******99774 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.4    0.0064        13       9      22 ..     194     207 ..     187     210 .. 0.81
   2 ?    7.4   0.2    0.0026       5.3       9      25 ..     208     226 ..     206     260 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0064
  Cytochrome_CBB3   9 lykknCasCHgkgg 22 
                      + +++C +CHg+g+
       CCG93163.1 194 TIAQTCPRCHGAGA 207
                      5689*******875 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0026
  Cytochrome_CBB3   9 lykknCasCHgkggag..p 25 
                      + +k C +CHg+g     +
       CCG93163.1 208 IIEKPCLRCHGEGRIKqtA 226
                      66788******88655443 PP

>> DUF2318  Predicted membrane protein (DUF2318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   0.00017      0.33      31      60 ..     154     183 ..     141     200 .. 0.86
   2 ?   -1.0   0.2      0.98     2e+03      32      55 ..     194     217 ..     186     231 .. 0.74
   3 ?   -3.7   0.0       6.8   1.3e+04      45      55 ..     272     282 ..     269     283 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
     DUF2318  31 rvaldaCevCekkgYvqegeelvCknCgvr 60 
                  + ld+C  Ce++gY      + C  C+ +
  CCG93163.1 154 FTKLDTCPGCEGRGYAPGSGMISCPVCSGS 183
                 4789***********************865 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.98
     DUF2318  32 valdaCevCekkgYvqegeelvCk 55 
                 +  ++C  C+++g ++e+  l C+
  CCG93163.1 194 TIAQTCPRCHGAGAIIEKPCLRCH 217
                 556889999999988888888886 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 6.8
     DUF2318  45 YvqegeelvCk 55 
                 +  +g++l C+
  CCG93163.1 272 FSRQGNDLLCE 282
                 7899******7 PP

>> DUF3365  Protein of unknown function (DUF3365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2      0.13   2.6e+02     113     124 ..     193     205 ..     141     208 .. 0.82
   2 ?    8.2   0.2    0.0015       2.9     114     125 ..     209     220 ..     205     242 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.13
                 E-.-TTTHHHHS- CS
     DUF3365 113 rv.eesClkCHgd 124
                  +  ++C +CHg+
  CCG93163.1 193 FTiAQTCPRCHGA 205
                 555899*****97 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0015
                 --TTTHHHHS-G CS
     DUF3365 114 veesClkCHgdp 125
                 +e+ Cl+CHg+ 
  CCG93163.1 209 IEKPCLRCHGEG 220
                 5999******97 PP

>> DUF5351  Family of unknown function (DUF5351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   1.4     0.006        12      19      27 ..     159     167 ..     158     169 .. 0.66
   2 ?    4.5   0.5      0.02        39      20      28 ..     177     185 ..     171     186 .. 0.84
   3 ?    6.4   0.1    0.0051        10      19      27 ..     198     206 ..     190     208 .. 0.89
   4 ?   -0.2   0.1      0.58   1.2e+03      20      27 ..     213     220 ..     212     222 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.006
     DUF5351  19 TCesCeGtg 27 
                 TC+ CeG g
  CCG93163.1 159 TCPGCEGRG 167
                 777777766 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.02
     DUF5351  20 CesCeGtgk 28 
                 C+ C+G+g+
  CCG93163.1 177 CPVCSGSGQ 185
                 999999986 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0051
     DUF5351  19 TCesCeGtg 27 
                 TC+ C+G+g
  CCG93163.1 198 TCPRCHGAG 206
                 *******98 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.58
     DUF5351  20 CesCeGtg 27 
                 C  C+G+g
  CCG93163.1 213 CLRCHGEG 220
                 88888887 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1    0.0041       8.1      18      27 ..     156     165 ..     151     166 .. 0.90
   2 ?    9.0   1.8   0.00043      0.85       2      27 ..     177     204 ..     176     205 .. 0.86
   3 ?   -4.6   1.0       7.4   1.5e+04      22      27 ..     213     218 ..     213     218 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0041
    zf-TFIIB  18 eidyCpqCrG 27 
                 ++d+Cp C+G
  CCG93163.1 156 KLDTCPGCEG 165
                 58*******9 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00043
    zf-TFIIB   2 CPkCqdeleesergg..veidyCpqCrG 27 
                 CP+C+ + ++  + g     ++Cp+C+G
  CCG93163.1 177 CPVCSGSGQIRSSKGffTIAQTCPRCHG 204
                 *********9999887455689*****9 PP

  == domain 3  score: -4.6 bits;  conditional E-value: 7.4
    zf-TFIIB  22 CpqCrG 27 
                 C +C+G
  CCG93163.1 213 CLRCHG 218
                 889999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2754.99
//
Query:       CCG93164.1  [L=212]
Description: Protein grpE [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-47  159.1   1.0    9.1e-47  158.8   1.0    1.2  1  GrpE      GrpE
  ------ inclusion threshold ------
      0.088   13.0   0.6       0.14   12.3   0.6    1.2  1  STN1_2    CST, Suppressor of cdc thirteen homolog, complex su


Domain annotation for each model (and alignments):
>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.8   1.0     1e-50   9.1e-47      18     166 .]      36     184 ..       3     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 158.8 bits;  conditional E-value: 1e-50
                 CCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC..HHH-HHHHHHHHHHHHHHHHHHHHHTT-EE--- CS
        GrpE  18 eeeleelekevkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralksakeneeekslleGvemtlkqllkiLekhgvekiep 116
                  +e ++  ++ +e++ekllr+la+++n+rkr  kek+ea k a+++++++LLpv+Dn+e  ++s++++++++s+l+G++m+l q+l+iL+++gve+ie+
  CCG93164.1  36 LSEWKQKAQQTDEMHEKLLRTLADWDNARKRISKEKDEAIKHANTQIFQSLLPVIDNFEIGIQSSQKASDINSILTGIKMVLSQFLQILKEEGVEPIEA 134
                 344556677899*************************************************************************************** PP

                 TTSB--TTTEEEEEEECSSC...TBEEEEEE--EEETTEEEE-EEEEEEE CS
        GrpE 117 kgepFDpnlheavstveddekeegtvvevvqkGYklkdrvlRpAmVkVsk 166
                  g+pFDp++he +  ve+de+eeg+v + ++kGY++k+r+lR+A V V+k
  CCG93164.1 135 LGKPFDPHFHESLGFVETDEVEEGHVASQLRKGYMYKGRLLRAAAVYVAK 184
                 ************************************************97 PP

>> STN1_2  CST, Suppressor of cdc thirteen homolog, complex subunit STN1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   1.6e-05      0.14      33     122 ..      40     129 ..      31     131 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
                 XXHHHHSCGGSHHHHHHHHHH..HHHHHHHHCT-SEEEHHHHHT-HHHHHHHSSHHCH-SS---SS----SCHHHHHHHHHHHHHHHHHCTS CS
      STN1_2  33 keesssdasellkslvsllse..kikefllekkvqtfyqqeletveslvslaskpvkessaaeevevagesaskqirslfkealqllqeeGl 122
                 k++++ +++e+ ++l  +l++  ++++ + ++k + ++ ++ +  +sl++++++  +  +++ ++ +  +s  + i+ ++ + lq+l+eeG+
  CCG93164.1  40 KQKAQ-QTDEMHEKLLRTLADwdNARKRISKEKDEAIKHANTQIFQSLLPVIDNFEIGIQSS-QKASDINSILTGIKMVLSQFLQILKEEGV 129
                 33333.3444557888888888899999999999******************9966666665.5568999*********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1501  (0.0837191); expected 358.6 (0.02)
Passed bias filter:                      829  (0.0462379); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1429.11
//
Query:       CCG93165.1  [L=413]
Description: Serine phosphatase RsbU, regulator of sigma subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-37  127.6   0.0    8.8e-37  126.9   0.0    1.3  1  SpoIIE         Stage II sporulation protein E (SpoIIE)
     0.0098   15.8   0.0      0.022   14.7   0.0    1.5  1  DUF1826        Protein of unknown function (DUF1826)
  ------ inclusion threshold ------
      0.041   13.9   0.7         25    5.0   0.0    3.5  3  ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
        0.2   10.6   0.0        4.1    6.3   0.0    2.1  2  Peripla_BP_5   Periplasmic binding protein domain


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9   0.0     2e-40   8.8e-37       2     191 ..     220     411 ..     219     413 .] 0.97

  Alignments for each domain:
  == domain 1  score: 126.9 bits;  conditional E-value: 2e-40
                 TTEEEEEEEECSSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEEEEETTSTEEEEE- CS
      SpoIIE   2 dgrlalvvgDvvGhGleAalimgllrsalrelataglepaevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppllvrpdggtkllla 100
                 d + alv+ Dv  +Gl++ li+g+ r+a+r+l+++  +p e+l rln++l+ ++  +  +++++++ +d++ +++++a+aGh+ p+  r+  g+ ++++
  CCG93165.1 220 DYHCALVLSDVATKGLSSLLISGMCRTAIRSLVDHIRSPLEILCRLNEVLYPEICGK-TIISLIYLFIDEKLNTVTMARAGHEMPIFCRK--GKIEKID 315
                 56789***************************************************9.********************************..99***** PP

                 -SS--TTTSSS....T-EEEEEEE--TTEEEEEESCCCCSSSHHHHHHCCCHHCHHHHCT.....HCCHHHHHHHHHHH.HTTSSSSS-EEEEEEE CS
      SpoIIE 101 stglplGilpe....adyetaelelepgdtlllyTDGvtEardsdgelfgkerllallasaegesleelldalveelle.lgsgeleDDitllvlr 191
                  +g+ lGi ++      ++++el+l+ gd lll+TDG++Ea +++g +fg+er+ +++++ ++++++ +l+a+ve+l+  +++  ++DD+tll+l 
  CCG93165.1 316 LPGICLGIDEGkifnKMVKEQELKLQSGDFLLLFTDGLVEAVNKEGAFFGRERAEKIVQEMSEKDPDIVLSAIVEQLKLfCKETAPFDDVTLLALS 411
                 ********998***999*********************************************9****************888889********985 PP

>> DUF1826  Protein of unknown function (DUF1826)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.9e-06     0.022      58     102 ..      36      82 ..      21      86 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.9e-06
     DUF1826  58 e..aalleaelpeaagkdalaaDialLvdafaelfgakevglrLevl 102
                 e   ++  +  ++ ++++al +Di++L ++ ++l++ak + lrLe +
  CCG93165.1  36 EeyNQSFIQYIKSLSSQKALSEDIQSLLELVMKLISAKGLVLRLENM 82 
                 3445667788899999****************************975 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.021        96      11      44 ..      96     129 ..      87     132 .. 0.87
   2 ?    1.6   0.1     0.063   2.8e+02       3      37 ..     143     177 ..     142     182 .. 0.89
   3 ?    5.0   0.0    0.0055        25       8      42 ..     327     361 ..     324     363 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.021
                    HHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSB CS
  ClpB_D2-small  11 dlalkklekrlkergvelevtdealdalaekgyd 44 
                    d+ l+kl++ lk++  + ev+d + + + ++g++
     CCG93165.1  96 DISLEKLKANLKRQTTKKEVKDTLFSNIEKNGIS 129
                    789********************99999999876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.063
                    HHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHH CS
  ClpB_D2-small   3 keelkkIvdlalkklekrlkergvelevtdealda 37 
                    +e lkk++ ++++++   l+++ ++ e++++ +++
     CCG93165.1 143 EEWLKKVIAMMINQIFFFLENHSLQRELKEDTIRF 177
                    7889**********************999999877 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0055
                    HHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHT CS
  ClpB_D2-small   8 kIvdlalkklekrlkergvelevtdealdalaekg 42 
                    kI ++++k++e +l++ ++ l +td +++a+ ++g
     CCG93165.1 327 KIFNKMVKEQELKLQSGDFLLLFTDGLVEAVNKEG 361
                    799*************************9998876 PP

>> Peripla_BP_5  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.019        86     185     216 ..     111     144 ..      78     156 .. 0.71
   2 ?    6.3   0.0    0.0009       4.1     163     198 ..     354     389 ..     346     400 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.019
  Peripla_BP_5 185 ikkakpdvvlsti..nGdsnvafykelkeagika 216
                    kk  +d+++s+i  nG s+  fy elke+g ++
    CCG93165.1 111 TKKEVKDTLFSNIekNGISIGYFYAELKEEGDEE 144
                   23445899****97789***********998655 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0009
  Peripla_BP_5 163 gevvgeeYlplgssdvqkivakikkakpdvvlstin 198
                   +e v++e + +g++  +kiv+++ ++ pd+vls i+
    CCG93165.1 354 VEAVNKEGAFFGRERAEKIVQEMSEKDPDIVLSAIV 389
                   4889999999************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1141  (0.0636399); expected 358.6 (0.02)
Passed bias filter:                      774  (0.0431703); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3127.64
//
Query:       CCG93166.1  [L=175]
Description: Anti-anti-sigma regulatory factor RsbS (Antagonist of anti-sigma factor) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-07   30.6   0.0    3.3e-07   29.9   0.0    1.4  1  STAS      STAS domain
    0.00061   20.1   0.0    0.00091   19.5   0.0    1.3  1  STAS_2    STAS domain


Domain annotation for each model (and alignments):
>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   3.7e-11   3.3e-07      46     109 ..      45     105 ..      10     115 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 3.7e-11
                 ..-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTTCGGCC..SE CS
        STAS  46 eslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektgffdeveeek 109
                 + ++ li+dl++ +++Ds+ +++L  i+ ++++i +e+ +vn+++   + + ++g+++++   k
  CCG93166.1  45 SGIRRLIVDLQGCTYMDSTFLGTLAGIHIKFNQIMGELKIVNVSKKNLDSIATLGLDKIF---K 105
                 5799*****************************************************999...3 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     1e-07   0.00091      10      80 .]      30     101 ..      21     101 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1e-07
      STAS_2  10 dtaaelreqllealaag.aevvvDlsgvervDsaalalLlalartarargrrlvlrglppalrrlldlyGld 80 
                 d + +lr    ++l+ g +++ vDl+g++++Ds++l+ L+  +    +  + l ++++++  ++  + +Gld
  CCG93166.1  30 DKCNSLRLFYNQLLSSGiRRLIVDLQGCTYMDSTFLGTLAGIHIKFNQIMGELKIVNVSKKNLDSIATLGLD 101
                 6677788888999999************************99999988888888888888877777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1269.20
//
Query:       CCG93167.1  [L=62]
Description: hypothetical protein MFUM_940042 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   14.4   0.0      0.031   14.1   0.0    1.0  1  UPF0139   Uncharacterised protein family (UPF0139)


Domain annotation for each model (and alignments):
>> UPF0139  Uncharacterised protein family (UPF0139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.7e-06     0.031       5      50 ..      12      57 ..       8      60 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-06
     UPF0139  5 prrp.ekakrykppalssqkedltpdymnllgmifsllglmlklkwc 50
                 rr+ +++ ++ +++  + k++l+ d+++ +gm++ ++ + lk+k  
  CCG93167.1 12 TRRKvKTISHFSSNKGGE-KKNLKGDCIGEIGMVMNFIYIKLKYKKI 57
                444404444444444444.69***********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 442.34
//
Query:       CCG93168.1  [L=264]
Description: Metal-dependent hydrolase of the beta-lactamase superfamily [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-35  122.1   0.2    2.6e-35  121.8   0.2    1.1  1  Lactamase_B_2  Beta-lactamase superfamily domain
    1.9e-06   28.0   0.1    3.2e-06   27.3   0.0    1.5  2  Lactamase_B    Metallo-beta-lactamase superfamily
     0.0064   16.4   0.0      0.013   15.4   0.0    1.5  1  Lactamase_B_3  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.021   14.2   0.0      0.032   13.7   0.0    1.2  1  Lactamase_B_6  Metallo-beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.2   5.7e-39   2.6e-35       3     200 ..      54     235 ..      52     236 .. 0.92

  Alignments for each domain:
  == domain 1  score: 121.8 bits;  conditional E-value: 5.7e-39
                    EEES--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCC...C--EEEEEEEEHHHHHHCCTTCGHHHCHTT...TTEEEEEE-T CS
  Lactamase_B_2   3 iLiDagpdlrqqalralqPvelrdelppidaVllthaHyDHlaglltlre...lrpkklplyapkgvlavleanfvylaleee...pavnvheldw 92 
                    iLiD+ p+lr q lr         +++ ++++l+th+H+DH+ g+++lr+   + ++klp+ya+++v+a+l++ f+y++++     + ++v +  +
     CCG93168.1  54 ILIDTTPELRLQCLRE--------NIQNVHGILFTHQHADHIMGFDDLRRfcdIIGTKLPIYASEEVIATLKRIFPYAFDPSLeknGYLRVIPHII 141
                    9********9996655........589***********************76655667*********************998899999******** PP

                    TSEEEECSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEE.CTTEEEEEESS-S---HHHHHHHCT-SEEEEE-S-SSTTHHHHHHT---STSHHHH CS
  Lactamase_B_2  93 gesfelgdggleitatparhksgrrldrnagdtlGlrie.gggkrvyyigDtgyipeeigerlggadllllditayeddemirhmgHltpeeavea 187
                    +++f++g   ++i++ p++h++ +        tlG+++e +++k ++y+ D+++ip+ i erl ++++l++d+   +d+    h++Hl  +ea+ +
     CCG93168.1 142 EGTFQIG--RFTIHPLPLPHGKIT--------TLGFLFEqEKKKILAYLVDCKTIPQTIIERLLDVEVLIIDAL--RDEP---HPTHLCTSEAITM 222
                    ******9..689**********99........*******6666669************************9966..5555...************* PP

                    CTTSSSSEEEEES CS
  Lactamase_B_2 188 aadlgakrlvliH 200
                    a+++gak+++++H
     CCG93168.1 223 AQRIGAKKTYFTH 235
                    ************* PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   7.2e-10   3.2e-06       7      95 ..      43     124 ..      37     177 .. 0.74
   2 ?   -3.4   0.0       1.8     8e+03     116     131 ..     198     213 ..     189     227 .. 0.61

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 7.2e-10
                  EEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCC CS
  Lactamase_B   7 nsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkg 95 
                  +s +++++ + iLiDt  + + + +       + ++ +v+ ++ TH H+DHi g ++l++  d+   + +++a +     +++ +++ +
   CCG93168.1  43 SSLYLTDGISSILIDTTPELRLQCL-------RENIQNVHGILFTHQHADHIMGFDDLRRFCDIIGTKLPIYASEEVIATLKRIFPYAF 124
                  56667777789*************6.......89************************9988887777666666665555555555555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.8
                  CCCTEEEEEHECTTST CS
  Lactamase_B 116 naggrralyvtggpgh 131
                  +++ + al   ++p+h
   CCG93168.1 198 EVLIIDALRDEPHPTH 213
                  4444444444444444 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     3e-06     0.013       8     157 ..      43     229 ..      40     235 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3e-06
  Lactamase_B_3   8 nsflletagarilvDPfka.nlgyeppa.eeaDlvlisqaledHah.letlkql.................aenvkvlee................ 67 
                    +s+ l+++  +il+D + +  l+  +++ +++  +l +++++dH    + l++                  a       +                
     CCG93168.1  43 SSLYLTDGISSILIDTTPElRLQCLRENiQNVHGILFTHQHADHIMgFDDLRRFcdiigtklpiyaseeviA-------Tlkrifpyafdpslekn 131
                    566666666899999876664444443359999***********8625667776999999999965555550.......34445555555555555 PP

  Lactamase_B_3  68 ..........geslevggleiravatshdavggsergenngflleq.dgltiyhlGhlahelsseelkelgrvDvvltPvgg....pltlgqeeal 148
                              ++++++g + i   +  h       + +  gfl+eq ++  +++l ++ + + ++ ++ l +v+v+++        p  l + ea+
     CCG93168.1 132 gylrviphiiEGTFQIGRFTIHPLPLPHG------KITTLGFLFEQeKKKILAYLVDCKT-IPQTIIERLLDVEVLIIDALRdephPTHLCTSEAI 220
                    55555555777889999999999999994......346789*****5566789******8.7888889999******9988889988888888999 PP

  Lactamase_B_3 149 elakrLkpk 157
                     +a+r+ +k
     CCG93168.1 221 TMAQRIGAK 229
                    999888765 PP

>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.2e-06     0.032      25      77 ..      63     114 ..      46     132 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.2e-06
  Lactamase_B_6  25 alkelekviptvdliLLshatlehlGayallyakfksklllnipvyatlpvvk 77 
                     l+ l++ i++v  iL++h  ++h+ ++  l  +f   +++++p+ya+  v++
     CCG93168.1  63 RLQCLRENIQNVHGILFTHQHADHIMGFDDLR-RFCDIIGTKLPIYASEEVIA 114
                    46778899********************9887.67789*********998863 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2161.37
//
Query:       CCG93169.1  [L=268]
Description: Mg-dependent DNase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-67  227.7   0.1    1.7e-67  227.5   0.1    1.0  1  TatD_DNase       TatD related DNase
  ------ inclusion threshold ------
       0.18   11.5   0.0       0.37   10.5   0.0    1.5  1  Ribosom_S30AE_C  Sigma 54 modulation/S30EA ribosomal protein 


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.5   0.1   1.9e-71   1.7e-67       2     254 ..       4     260 ..       3     261 .. 0.96

  Alignments for each domain:
  == domain 1  score: 227.5 bits;  conditional E-value: 1.9e-71
                 EEEE-TTSCCCTTTHHHHHHHHHHTTEEEEEEE-SSGGGHHHHHHHHTT.TTTEEEEE---GGGGGCC.CCHHHHHHHHHHCCCTSEEEEEEEEEET.. CS
  TatD_DNase   2 DaHcHldskefeedreeileraeeagvaavvvvgtsskdskavlelakkypnkvyavlGiHPnevdeasedlleelkelanvkhskvvaiGeiGLDy.. 98 
                  +H+Hld+++f++d e++++ra ++g+++++++gt++++s+++l +a+k p  v+a++GiHP e++++ + ++++l +l  ++h+k+vaiGe+GLD+  
  CCG93169.1   4 ETHAHLDFPQFSKDLEAVIQRAIDSGIEKIITIGTNLQSSRKALSIAEKIPA-VWAAVGIHPLEAHKRAQPFEKDLSDL--LDHPKIVAIGETGLDFhk 99 
                 58*************************************************9.**************999999******..****************77 PP

                 ......-CCCCCGHHHHHHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHHHHCGGCCSEEEETT--S-HHHHHHHHHTTEEEEE-GGGGTTTTHHHHHH CS
  TatD_DNase  99 ......ysreestkeaqeevFeeqlrlAkelklplviHlrkaeedlleilkeaaeakakvvlHsfsgsaeeakkflklgyyislsglltfknakelrel 191
                         + e++k+ q+e+F  ql+lAke kl ++iH r+a++++l++l+ ++++  ++v+H+f g+ +ea+ + ++   +s++g++tf na+ lr++
  CCG93169.1 100 fdpslsPAEIEEQKKIQQEFFLSQLELAKEAKLNVIIHQRAAFNETLSLLSPYQGVL-RGVFHCFVGTSQEASLLFSQSHLVSFTGIITFPNAQALRQT 197
                 66665325556777***************************************8876.***************************************** PP

                 HHHS-GGGEEE---TTSSEECCCTTSE--GGGHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  TatD_DNase 192 vkavpldrlLiETDaPyltpkpyrgkrnepanvayvveklaelkaltleelaeitaeNakrlf 254
                 v ++pl+++++ETD+P+l+p+pyrgkr ep  v+ +++++a++k+++lee+a +t+  a ++f
  CCG93169.1 198 VLEIPLENMMLETDCPFLAPVPYRGKRSEPSHVRIIADEIAKIKKISLEEVASQTTRTASEFF 260
                 ********************************************************9999988 PP

>> Ribosom_S30AE_C  Sigma 54 modulation/S30EA ribosomal protein C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.1e-05      0.37       5      41 ..     231     267 ..     228     268 .] 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.1e-05
                      -EEEEE-S--S-B-HHHHHHHHHHHT-SEEEEEETTT CS
  Ribosom_S30AE_C   5 eivrtkrfelkpmsveeAilqmellghdFfvFrnaet 41 
                      +i++ +  ++k +s+ee + q      +Ff+F+n++ 
       CCG93169.1 231 RIIADEIAKIKKISLEEVASQTTRTASEFFAFQNSKR 267
                      789999999*************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2201.53
//
Query:       CCG93170.1  [L=588]
Description: putative dihydroxyacid dehydratase (ilvD-like) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.9e-215  715.4   1.6   4.5e-215  715.2   1.6    1.0  1  ILVD_EDD  Dehydratase family
  ------ inclusion threshold ------
      0.019   14.3   0.0      0.035   13.5   0.0    1.4  1  ExoD      Exopolysaccharide synthesis, ExoD


Domain annotation for each model (and alignments):
>> ILVD_EDD  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  715.2   1.6    5e-219  4.5e-215       1     517 []      66     583 ..      66     583 .. 0.98

  Alignments for each domain:
  == domain 1  score: 715.2 bits;  conditional E-value: 5e-219
    ILVD_EDD   1 kpiigiansyselvpchvhlkelaeavkegveeaggvpaefntigvsDgiamgeegmrysLpsReliadsvetmleaqllDalvlisgCDKivPgllma 99 
                 k +igia+++s+l+pc++h+++la+++++g++eagg  + fnti++sDgi+mg++gm+ysL+sRe+iads+et+++ + +D++v+i+gCDK++Pg+l+a
  CCG93170.1  66 KDLIGIASTWSQLTPCNMHIDKLAREAASGATEAGGKTLIFNTITISDGISMGTAGMKYSLVSREVIADSIETVVCCEGMDGIVTIGGCDKNMPGCLIA 164
                 568************************************************************************************************ PP

    ILVD_EDD 100 aarlniPaifvsgGpmeagkkk..kldlssvfeavgalaagkiseeeleeleeaacpgaGsCsgmgTAntmaclaealGlslpgsasipatsaerkela 196
                 +arln+Pa+fv+gG++++g +k  ++d++svfeavg++++gk+s+eel ++e++a+pg+GsC+gm+TAntmac++ea+G+slp+s++ pa+s e+ e a
  CCG93170.1 165 IARLNRPAVFVYGGTILPGCYKgeNIDIISVFEAVGSFSQGKLSKEELLAIEQHAIPGPGSCGGMYTANTMACAIEAMGMSLPNSSTHPAVSLEKIEDA 263
                 ******************8866669************************************************************************** PP

    ILVD_EDD 197 eeagkrivelvekdlkprdiltkeafeNAivvllalGGStNavlHllAiAreagveltlddfdelsrkvpllaklkPsgkydmedlhraGGvpavlkeL 295
                 ++ag+++++++++ ++prdiltk+afeNAi+v++alGGStNavlHllAiA++a+vel+l+dfd++++kvp+la+lkPsgk+ + dl ++GG+  +lk+L
  CCG93170.1 264 RRAGRAVLQMINQGIRPRDILTKKAFENAITVVIALGGSTNAVLHLLAIAHAAEVELSLEDFDRIGQKVPVLADLKPSGKHSVADLSQIGGLTPLLKRL 362
                 *************************************************************************************************** PP

    ILVD_EDD 296 lkagllhgdvltvtgktlaenlee..aevkeqdvirplekplskegglavLkGnLapeGavvKtsaveeellkfegpArvfdseeeaveailkgkikag 392
                 l++gllhgd+ltvtgk+la+nle+  +    q++i+++++p++k+++l +L+GnLapeGav+K++++e   ++f+g Ar fdsee+a+e+il+g+ik+g
  CCG93170.1 363 LDKGLLHGDCLTVTGKSLAQNLENvaDYPPFQTIIHDFSNPIKKDSHLVILRGNLAPEGAVAKITGME--GKTFTGIARPFDSEEQALEKILDGTIKKG 459
                 **********************997444489************************************9..8899************************* PP

    ILVD_EDD 393 dvvviryeGPkGgpGmpEmlkptsallgkglgkkvalitDGRfSGaskglvighvsPEAaegGpialvedGDiieidiekrtlelevseeelaaRraaw 491
                 dvvviryeGPkGgpGm+Eml+ptsa++g+glgk+valitDGRfSG+++g+v+gh++PEAa gGpialve+GD i+id ek++++l+v+ e l++R+++w
  CCG93170.1 460 DVVVIRYEGPKGGPGMREMLAPTSAIMGRGLGKEVALITDGRFSGGTHGFVVGHICPEAAIGGPIALVEEGDHITIDTEKKEITLHVTPEILQKRQSKW 558
                 *************************************************************************************************** PP

    ILVD_EDD 492 kpekkvktrgllakyaklvssaseGA 517
                 ++ +  k rg+l k+ak+vs+a+ GA
  CCG93170.1 559 TS-PPLKCRGVLYKFAKTVSQANLGA 583
                 *8.44567***************998 PP

>> ExoD  Exopolysaccharide synthesis, ExoD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.9e-06     0.035      53     129 ..     224     299 ..     212     307 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.9e-06
        ExoD  53 tifGllilllalqmllgrrtpwLPkklarrsisrkklqkllkklrpllrrlerllrpRltfltsrlaerllglaill 129
                   +G +     + +++    + LP+  ++  +s +k++ + +++r +l+++ + +rpR  +lt++++e+++ ++i+l
  CCG93170.1 224 GSCGGMYTANTMACAIEAMGMSLPNSSTHPAVSLEKIEDARRAGRAVLQMINQGIRPRD-ILTKKAFENAITVVIAL 299
                 4566677777788888888999***********************************95.999****9999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4360.72
//
Query:       CCG93171.1  [L=445]
Description: Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.2e-102  341.6   0.0   7.4e-102  341.4   0.0    1.0  1  GIDA           Glucose inhibited division protein A
    3.5e-06   26.8   0.0    5.2e-06   26.3   0.0    1.4  1  DAO            FAD dependent oxidoreductase
    4.9e-05   22.9   0.0    7.2e-05   22.3   0.0    1.2  1  FAD_oxidored   FAD dependent oxidoreductase
    0.00024   21.3   0.0    0.00064   19.9   0.0    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00033   20.0   0.0    0.00057   19.2   0.0    1.4  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0018   17.5   0.2      0.005   16.0   0.1    1.7  2  FAD_binding_2  FAD binding domain
  ------ inclusion threshold ------
      0.021   15.4   0.3      0.066   13.8   0.0    1.9  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.041   13.2   0.0       0.07   12.4   0.0    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.062   13.2   0.1       0.11   12.3   0.1    1.4  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
      0.062   12.0   0.2       0.13   10.9   0.1    1.5  2  HI0933_like    HI0933-like protein
       0.16   11.1   0.1       0.32   10.2   0.1    1.4  1  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.4   0.0  4.5e-105  7.4e-102       2     392 .]       9     374 ..       8     374 .. 0.98

  Alignments for each domain:
  == domain 1  score: 341.4 bits;  conditional E-value: 4.5e-105
                 EEEE-SSHHHHHHHHHHHHTT--EEEE.........ES-GGGTT--SSSSEEE-T....THHHHHHHHHHHT-SHHHHHHHHEEEEEEESTTS-CCC-E CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLi.........thkldtiaelsCnpsiggi....akgllvrEidalggliikaadkagiqfrilNrskGpavra 87 
                 ++ViGgG+AG+eAA+++a++G++v L+         +h+ +++ae++C++s+g++    a+gll +E++ l++l+i++ad++++          pa+++
  CCG93171.1   9 IVVIGGGLAGSEAAWQIAQRGIPVFLYemrpfiptgAHSGSNLAEIVCSNSFGSNllsnASGLLLQELRILDSLLISIADSCSV----------PAGKS 97 
                 79**********************************************************************************..........***** PP

                 EEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT-EEEETTEEEESSCTTC--B-THHHHHHH.TT- CS
        GIDA  88 lraqvdrelyskevteklenepnleiieeeveeliveekkvkgvvtedgetikakavviatGtflkgkihigekelsaGrlgeltseglseslke.lgf 185
                 l  +vdre++s+ vt+ + +epn+++i+eev +l+                  +++++iatG+                    lts++l+++l++ ++ 
  CCG93171.1  98 L--AVDRERFSQMVTQNILKEPNITLIREEVVDLVF-----------------DSICIIATGP--------------------LTSPRLAARLEAlTQS 157
                 *..*******************************88.................99********....................************99** PP

                 -EEEEEEEE--EEEGGGS-TTTSEEE---.SS-B-SSSSSSSTCG----EEEEE--HHHHHHHHCTCCC-T.T----..B--S-CCC-SSTCC...CCC CS
        GIDA 186 ellrlktgtppridkesidfskleeqsgd.kegeefsylnkplnkeqvecfltatneathkiikenlkksaklfegc..ieelgprycpsied...kiv 278
                 + l+++++  p++d++sidfs+++++s++ ++ ++ +y+n+pl+keq+ +   ++ +a+   +++++k+   +fegc  ie +++r+++++++   +++
  CCG93171.1 158 NSLYFYDALCPIVDASSIDFSSAFKASRYmDPANSGDYVNCPLTKEQYLELSRELANAERINLHDFEKE--LYFEGClpIEIMAKRGEDTLRFgplRPT 254
                 *****************************999999*********************************9..59********************777777 PP

                 CST.....T-S--EEEEEESSTT--EEEEET----S-HHHHHHHHTTSTT-TT--EEE--EEEEEEEE-GGGB-T.TSBBSSSBTEEE-CGGGTB-SHH CS
        GIDA 279 rla.....dkeshqvfLepegleteliylvgfstslpeevqkevlrsipGLenaeivrpGyaieydyvdprqlln.tLetkkvkgLflAGqinGteGYe 371
                 +l      ++++++v+L++++l+ +l+++vgf+t+l++++q++++r+ip+L+nae++r+G +++++++++++ll  tL++k+++ Lf+AGq+ G eGY 
  CCG93171.1 255 GLIdpktnKRPYAVVQLRQDNLAASLYNMVGFQTNLTYKEQDRIFRMIPALKNAEFIRYGQLHRNTFINAPKLLLpTLQFKDNPLLFFAGQLAGFEGYA 353
                 77799999******************************************************************88*********************** PP

                 HHHHHHHHHHHHHHHHHCTS- CS
        GIDA 372 EaaaqGllAGinaarkakgke 392
                 +++a+Gl+AGina+r ++gke
  CCG93171.1 354 ANIASGLVAGINASRLFQGKE 374
                 ****************99986 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.2e-09   5.2e-06       2      40 ..       9      49 ..       8     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.2e-09
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSS CS
         DAO  2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrn 40
                +v+iGGG +G+ +A++ a+rg  V l+e+++++ +ga +++
  CCG93171.1  9 IVVIGGGLAGSEAAWQIAQRGipVFLYEMRPFIPTGAHSGS 49
                8*****************************99887665544 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   4.4e-08   7.2e-05       2     111 ..       9     128 ..       8     164 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 4.4e-08
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvl..GGlltsglvatdignkaeeqvvtgiareflerlrqrgga..rlkkrskw.n....tfepeva 89 
                   +vV+GGg+aG  AA + a++G  v L e r+++  G  + s l   ++ n   +++ +   + +l++lr  ++   ++++  +  +    +++ e +
    CCG93171.1   9 IVVIGGGLAGSEAAWQIAQRGIPVFLYEMRPFIptGAHSGSNLAEIVCSNSFGSNLLSNASGLLLQELRILDSLliSIADSCSVpAgkslAVDRERF 105
                   8*******************************86566666677788888888889999999999999988666655222333322134556777766 PP

  FAD_oxidored  90 ka.vleemlaeagvtvllntrlv 111
                    + v +++l+e+++t++ +++++
    CCG93171.1 106 SQmVTQNILKEPNITLIREEVVD 128
                   651566677*******9998875 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.9e-07   0.00064       1      30 [.      11      40 ..      11      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.9e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr 30
                   ++G+Gl+G+ aA+ +a++g+ v l+e+r+ 
     CCG93171.1 11 VIGGGLAGSEAAWQIAQRGIPVFLYEMRPF 40
                   8**************************986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.5e-07   0.00057       3      42 ..       9      48 ..       7     165 .. 0.77
   2 ?   -3.7   0.0       3.3   5.4e+03     115     143 ..     197     225 ..     184     231 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.5e-07
                 EEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  3 vvviGgGpAGlaaaltlaqagakvtlvelegtclnggcll 42
                 +vviGgG AG +aa ++aq g+ v l+e +  +++g  + 
   CCG93171.1  9 IVVIGGGLAGSEAAWQIAQRGIPVFLYEMRPFIPTGAHSG 48
                 8**************************9666666555444 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.3
                  TCTTC.TTBEECCSECHHHHHHCCSS-TS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 115 gipGvaenvgklvrtldsaealklkllpk 143
                  ++p  +e++ +l r+l++ae+++l+  +k
   CCG93171.1 197 NCPLTKEQYLELSRELANAERINLHDFEK 225
                  44444788888999999999999987765 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   3.1e-06     0.005       2      29 ..       9      36 ..       8      49 .. 0.90
   2 ?   -2.1   0.0      0.96   1.6e+03     366     381 ..     276     291 ..     239     296 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.1e-06
                   EEEE--SHHHHHHHHHHHHTTT-EEEEE CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavve 29
                   ++ViG+GlAG  AA ++a++G  v + e
     CCG93171.1  9 IVVIGGGLAGSEAAWQIAQRGIPVFLYE 36
                   79********************999877 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.96
                    EEEEEEES-EEEBETT CS
  FAD_binding_2 366 vpaqhytmgGvetden 381
                     +a++y+m G +t+++
     CCG93171.1 276 LAASLYNMVGFQTNLT 291
                    45679*******9986 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     4e-05     0.066       2      33 ..       9      40 ..       8      62 .. 0.91
   2 ?   -1.8   0.0       2.9   4.7e+03      43      63 ..     106     127 ..     101     130 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdk 33
                +vv+GgG+ g E+A  +a+ g  V + e+++ 
  CCG93171.1  9 IVVIGGGLAGSEAAWQIAQRGIPVFLYEMRPF 40
                8*************************999975 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.9
                 HHHH.HHHHHHTTEEEECSEEE CS
   Pyr_redox  43 skil.qeklekngievllntkv 63 
                 s+++ q+ l++ +i+++ +++v
  CCG93171.1 106 SQMVtQNILKEPNITLIREEVV 127
                 555614455666***9999887 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.3e-05      0.07      31      61 ..       9      39 ..       4      67 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.3e-05
                 EEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C 31 vlviGgGvaGlqAiatakglgakVtvlDvrp 61
                 ++viGgG aG +A++  ++ g  V ++++rp
   CCG93171.1  9 IVVIGGGLAGSEAAWQIAQRGIPVFLYEMRP 39
                 89********************999999987 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     7e-05      0.11       2      32 ..       9      39 ..       8      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdise 32
                + viG G+ G++ a ++a++g++V l+++++
  CCG93171.1  9 IVVIGGGLAGSEAAWQIAQRGIPVFLYEMRP 39
                78*************************9875 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1     8e-05      0.13       3      31 ..       9      37 ..       7      41 .. 0.93
   2 ?   -3.5   0.0       1.9   3.2e+03     369     389 ..     331     351 ..     328     363 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8e-05
                 EEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like  3 viviGgGaAGlmaAisaakrgkrVlllek 31
                 ++viGgG AG  aA ++a+rg  V l+e 
   CCG93171.1  9 IVVIGGGLAGSEAAWQIAQRGIPVFLYEM 37
                 89************************996 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.9
                  T-BBTTSTTEEE-GGGBSEEE CS
  HI0933_like 369 tmeskkvpgLffaGEvlDveg 389
                  t++ k  p LffaG +   eg
   CCG93171.1 331 TLQFKDNPLLFFAGQLAGFEG 351
                  788999999***998766665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1    0.0002      0.32      19      77 ..       8      65 ..       2      79 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0002
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTBSEEEEETTTHHHH CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlfsaivvrkpakelL 77
                 +v++G+G +G  aa  +a++ ++ v + e +  +  Ga  G  l + +  +  +++lL
  CCG93171.1  8 GIVVIGGGLAGSEAAWQIAQR-GIPVFLYEMRPFIPTGAHSGSNLAEIVCSNSFGSNLL 65
                69*******************.*********9999999999988776665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3036.94
//
Query:       CCG93172.1  [L=775]
Description: Phenylalanyl-tRNA synthetase beta subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-55  186.5   0.0      5e-55  185.8   0.0    1.4  1  B3_4             B3/4 domain
    2.3e-28   99.1   0.0    4.5e-27   94.9   0.0    2.5  3  tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM 
    6.3e-24   84.2   0.1    1.6e-23   82.9   0.1    1.7  1  FDX-ACB          Ferredoxin-fold anticodon binding domain
      3e-21   75.3   0.0    5.6e-21   74.5   0.0    1.5  1  tRNA_bind        Putative tRNA binding domain
    3.4e-10   40.1   0.9    3.1e-09   37.0   0.1    2.9  3  B5               tRNA synthetase B5 domain
  ------ inclusion threshold ------
      0.033   14.4   0.0       0.13   12.5   0.0    2.0  1  PhetRS_B1        Phe-tRNA synthetase beta subunit B1 domain


Domain annotation for each model (and alignments):
>> B3_4  B3/4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.8   0.0   1.7e-58     5e-55       2     172 ..     215     385 ..     214     387 .. 0.96

  Alignments for each domain:
  == domain 1  score: 185.8 bits;  conditional E-value: 1.7e-58
                 SSEEEEEEEES--.-----HHHHHHHHHTT-----HHHHHHHHHHHHHT--EEEEEGGGTBT.EEEEEE--TTEEEEBTTS-EEEE-TTSEEEETEEEE CS
        B3_4   2 cpryaarvlrgvkktapspewlqrrLrragirpinnvVDitNyvmlelgqPlhafDldkiqg.divvrlakegeklvtldgkereldeedlviadsekp 99 
                 c  y ++ +++++ ++psp wl  rL+++g++pin+vVD+tNyv+le+gqPlhafD++++   +i+vr  ++ge +v ldgke+ lde+dlvia  + +
  CCG93172.1 215 CLLYSGCWIENIR-VGPSPTWLASRLKASGFKPINAVVDVTNYVLLETGQPLHAFDAERFGSqNIIVRDGQKGELFVGLDGKEYVLDERDLVIASPH-Q 311
                 77899********.9*********************************************966*******************************966.5 PP

                 E.EETTTEEBTTTB--TT--EEEEEEEE--HHHHHHHHHHTT---HHHHHHHH---TTTHHHHHHHHHHHHHHH CS
        B3_4 100 v.slagvmggeeskvsedTknvfleaaafdpvsirktarrlglrseaskrfergvdpekleaaldravallsel 172
                 v +lag++gg++s+vs +T++++le+a+fdp +i++t++rlg+ +eas+rf r vdp+ +     rav+ll+++
  CCG93172.1 312 VeALAGIIGGKASAVSSSTTSILLESAWFDPFTIQQTSNRLGIVTEASYRFARRVDPQGVIPGRIRAVELLEKV 385
                 66*********************************************************************987 PP

>> tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.072   2.1e+02     115     188 ..     309     387 ..     271     390 .. 0.73
   2 !   94.9   0.0   1.5e-30   4.5e-27       1     160 [.     475     631 ..     475     676 .. 0.89
   3 ?   -3.0   0.0       1.4   4.2e+03     114     146 ..     729     761 ..     706     767 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.072
  tRNA_synthFbeta 115 peeerhlaivltgkreeeswsek.....aravdfydlkgivealleslgiekvefep.aehpalhpgrsAeikvdgkevG 188
                      p++ + la+++ gk+++ s s+      +  +d +++ ++ ++l    +  +++f +  + +   pgr   +++ +k++G
       CCG93172.1 309 PHQVEALAGIIGGKASAVSSSTTsilleSAWFDPFTIQQTSNRLGIVTEA-SYRFARrVDPQGVIPGRIRAVELLEKVIG 387
                      88999999999999854444443343325556666666666666666665.7999998999999****999999999998 PP

  == domain 2  score: 94.9 bits;  conditional E-value: 1.5e-30
  tRNA_synthFbeta   1 IpstlPkapttegelnkeqklrrklrdllagaGlnEvitysfvsekeldklleddderkavelanPlsedqsvlRtsLlpglLevlarNlargn 94 
                      Ips++P + + + + +ke++   kl+++la+ G++E++t ++v +++       ++e++ + l+nP s  + vlR+s l +l+ev++ N +rgn
       CCG93172.1 475 IPSRIPFGLASPSASEKEWDKVFKLKQALASKGYQECMTIPLVVDEK-------KKEEDRISLSNPASNYHVVLRKSFLRSLVEVANTNWRRGN 561
                      9******************************************9888.......45789*********************************** PP

  tRNA_synthFbeta  95 edvrlFEigkvflkdseeelpeeerhlaivltgkr.....eeeswsekaravdfydlkgivealleslgi.e 160
                      +++r+FEig+ f+++  + ++ ee++l+i++ g++     ++ +ws k+r+ dfydlk++v+ l ++ g+ e
       CCG93172.1 562 KEIRIFEIGTLFFNN--KGKVCEEQRLGILVGGETnqletHKLQWSMKQRKIDFYDLKQLVDFLEQKKGFlE 631
                      ***************..99**************994443346689999**************9988888744 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.4
  tRNA_synthFbeta 114 lpeeerhlaivltgkreeeswsekaravdfydl 146
                       p+e++ la +lt +++++++++++ ++ + +l
       CCG93172.1 729 IPKEKKSLAYALTFRAKDRTLTDEEVNAIVIKL 761
                      499999999999999977777766666555555 PP

>> FDX-ACB  Ferredoxin-fold anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.1   5.3e-27   1.6e-23       2      94 .]     679     774 ..     678     774 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 5.3e-27
                 SS--EEEEEEEEEESSS-HHHHHHHHHHHH-TTEEEEEEEEEEES...TTS-SSEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHTT.T-BES CS
     FDX-ACB   2 kfPaverDlalvvdekveaaelleavreaagellesvqlfDvYrg...kklaegkkSlalrltlqskertLtdeevnaaiekvvealekklgaelR 94 
                 ++P+++rD+al+vd++++++e+l+ +++++ ++lesv+lfD +++     ++++kkSla++lt+++k+rtLtdeevna++ k+ e l+kkl+ + R
  CCG93172.1 679 TQPSIRRDIALIVDKELKHKEILTEIQNQEVPFLESVELFDLFEDlegIRIPKEKKSLAYALTFRAKDRTLTDEEVNAIVIKLKEGLRKKLSCSFR 774
                 68*****************************************976557888**************************************998876 PP

>> tRNA_bind  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   1.9e-24   5.6e-21       1      95 [.      45     144 ..      45     145 .. 0.91

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 1.9e-24
                 EEEEEEEEEEEETTSSTEEEEEEEESSSSEEEEEESCTTTST.HHHHTTEEEEEET...TSESEEETTEEESSEE-EEEC..CESSCEEEEEESST--T CS
   tRNA_bind   1 lrvGkvleaeehpnadkLlvlkvdvGeeeprqivsgaknvye.peelvakkvvvva...nlkpkklrGveSeGMilsaee..ldekevgilelpadvea 93 
                 ++vG++++  +hpnadkL+ ++v++G  + + iv+gakn+   +++++a  ++v++   +++++k+rG++S GM++s +e  l+++++gi+ l ++v +
  CCG93172.1  45 IVVGEIVSWRPHPNADKLRLCEVFTGLDK-LSIVCGAKNFDVgDRVVLALPGAVLPgglQIGVRKIRGETSYGMLCSEKElgLSGESEGIMVLSKEVAI 142
                 79***************************.************8888888888888754445555**********************************9 PP

                 TC CS
   tRNA_bind  94 Ge 95 
                 G+
  CCG93172.1 143 GT 144
                 98 PP

>> B5  tRNA synthetase B5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.66     2e+03      38      62 ..     154     178 ..     139     180 .. 0.84
   2 !   37.0   0.1     1e-12   3.1e-09       2      67 .]     407     472 ..     406     472 .. 0.93
   3 ?   -2.1   0.1       1.7     5e+03      43      55 ..     679     691 ..     657     692 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.66
                 TCEEEE--TT-TT--SHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
          B5  38 dlllVtvPswRsDlereeDliEEva 62 
                   l+ ++ + RsDl+ ++ ++ E a
  CCG93172.1 154 TILDLEITPNRSDLLCYIGIARELA 178
                 5677889999*****9999888876 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 1e-12
                 EEEHHHHHHHHTS---HHHHHHHHHHTT-E.EESSTTCEEEE--TT-TT--SHHHHHHHHHHHH-G CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
          B5   2 slrvekinkllGidlseeeiikiLkrlgceriekdkdlllVtvPswRsDlereeDliEEvaRlyGY 67 
                 +lr +k+++ + ++ s++ i++ Lk+lg+    +++++   + Ps+RsDle eeDliEE +Rl G+
  CCG93172.1 407 RLRKQKLEEFTALSWSQAVIEEKLKSLGLLLRHQTEKESYWEAPSFRSDLEIEEDLIEELVRLRGL 472
                 68889999999999***************9989999999999*********************996 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.7
                 E--TT-TT--SHH CS
                 xxxxxxxxxxxxx RF
          B5  43 tvPswRsDleree 55 
                 t Ps R+D+ + +
  CCG93172.1 679 TQPSIRRDIALIV 691
                 679**99*98655 PP

>> PhetRS_B1  Phe-tRNA synthetase beta subunit B1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.2e-05      0.13      52      78 ..     152     178 ..     136     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.2e-05
   PhetRS_B1  52 eeviykidipAnryDLLcleglaralk 78 
                 +++i+ ++i  nr DLLc  g+ar l+
  CCG93172.1 152 KDTILDLEITPNRSDLLCYIGIARELA 178
                 678999******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5187.81
//
Query:       CCG93173.1  [L=256]
Description: Opacity protein or related surface antigen [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-11   42.2   9.4    1.5e-10   41.5   9.4    1.3  1  OMP_b-brl     Outer membrane protein beta-barrel domain
    0.00099   19.3   1.7     0.0022   18.1   1.7    1.7  1  PagL          Lipid A 3-O-deacylase (PagL)
  ------ inclusion threshold ------
      0.012   15.1   0.5      0.027   13.9   0.2    1.5  1  Surface_Ag_2  Surface antigen
      0.021   14.7   0.3      0.036   13.9   0.3    1.4  1  OmpW          OmpW family


Domain annotation for each model (and alignments):
>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   9.4   3.4e-14   1.5e-10      20     173 ..      75     241 ..      62     243 .. 0.74

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 3.4e-14
   OMP_b-brl  20 ggfyvggglglskvkv.dgv.........gsdsgfgfgvgagyefnd.....nvgvegglsysgdkdysgs..gktdikinllsvpvnagyafnlsdsv 101
                 g +y+ gg+g+  v + dg+         +++ ++ +g+ +gy++ d      + v+++++y g+++y +    +t  +i  + v +++gy+++   ++
  CCG93173.1  75 GAWYIAGGAGTGFVGAnDGFvnpggpitvNTNFSTVLGILGGYHWLDtethlAWTVDAEAAYIGTGHYLSLpnMNTALNIGAFMVNGTVGYHIG---NF 170
                 6678776665553332222233333455567779***********88667555************99999866666666777777777888876...39 PP

   OMP_b-brl 102 lpyggaGlgytkvevdvsgngasdsdtdfglgl..gaGveyaladnwslkaeYrytdlksdadndlknntfqvg 173
                  py+g+G+g + v+ +v      + +t++++ +   aGv+y ++ +w   a ++ +++++ ++ +l +++++vg
  CCG93173.1 171 EPYIGFGVGAVVVNAEVASA---NIGTNWAFAFqpIAGVRYFITAHWMAAAQFEWIWTDTLSGYNLGATQVTVG 241
                 *********88777776544...66777777774488******************9998888888888888876 PP

>> PagL  Lipid A 3-O-deacylase (PagL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.7   4.9e-07    0.0022      16     109 ..     117     220 ..     100     236 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4.9e-07
                 --E.ETTEEEEEEEEEEEEEE---..........EEEEEEEEE.EEEEE--SSEEEEEEEEEEEEEE.SSSEETTEE-SSSEEEEEEEEEEEEETTS.. CS
        PagL  16 erl.spdgglslyweaaaaawlgg..........ntglgvspv.lrfefasgkrplfleaGiGvalldsktkfgdkdlgsrfqFedqlglgyrfgegka 102
                  ++  ++++l ++ +a aa+ + g          ++++g+++v   + ++ g+  +++ +G+G+++++    +++ ++g+++ F+ q  +g+r+  + +
  CCG93173.1 117 YHWlDTETHLAWTVDAEAAYIGTGhylslpnmntALNIGAFMVnGTVGYHIGNFEPYIGFGVGAVVVN--AEVASANIGTNWAFAFQPIAGVRYFITAH 213
                 45666677777777777777777788888888885555555441456678899**************5..66899999999888888888888887776 PP

                 -EEEEEE CS
        PagL 103 lelglrl 109
                 + +++++
  CCG93173.1 214 WMAAAQF 220
                 6777776 PP

>> Surface_Ag_2  Surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   5.9e-06     0.027     155     194 ..     170     214 ..     148     220 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.9e-06
  Surface_Ag_2 155 vvPYvcaGvGadfvs.....vveainpKfayrgklGlsYaitpei 194
                   + PY++ GvGa  v+     +   +n  fa++  +G+ Y it+  
    CCG93173.1 170 FEPYIGFGVGAVVVNaevasANIGTNWAFAFQPIAGVRYFITAHW 214
                   78************988643333467889************9865 PP

>> OmpW  OmpW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   8.1e-06     0.036      97     190 ..     167     254 ..     129     256 .] 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.1e-06
                 TSSEEEEEEEEEEEEECCECCCHHCTCCEEEE-SECEEEEE..EEEEEECSSSEEEEEEEEEECTEECCEEETCTSSCCSCCCCSSECEEEEEEEE CS
        OmpW  97 sskvrPYvGaGvnyttffdeklgstgltdlklkdslgaagq..iGvDikvkddwllnldvkklflktkaeiklvgskklkskvkLdPwvvsigigy 190
                  ++++PY+G Gv  +++  e      + + ++  ++  a+q  +Gv + +  +w++ ++   +  +t   ++ +g+ ++++ + + P+ + ++igy
  CCG93173.1 167 IGNFEPYIGFGVGAVVVNAE------VASANIGTNWAFAFQpiAGVRYFITAHWMAAAQFEWIWTDTLSGYN-LGATQVTVGHAMIPLGL-LAIGY 254
                 478********665554443......44447*********9889****************999999999999.99999999888888743.34444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1933.90
//
Query:       CCG93174.1  [L=214]
Description: tRNA (guanine-N(7)-)-methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-34  118.4   0.0    2.6e-34  118.2   0.0    1.1  1  Methyltransf_4   Putative methyltransferase
    3.7e-07   30.1   0.0    5.6e-07   29.5   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    0.00048   19.8   0.0    0.00096   18.8   0.0    1.4  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
     0.0021   18.7   0.0     0.0042   17.8   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
     0.0061   15.9   0.0      0.013   14.8   0.0    1.5  2  GidB             rRNA small subunit methyltransferase G
     0.0088   15.6   0.0      0.012   15.2   0.0    1.1  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
       0.12   12.6   0.0       0.17   12.1   0.0    1.2  1  DRE2_N           Fe-S cluster assembly protein DRE2 N-terminu


Domain annotation for each model (and alignments):
>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.0     1e-37   2.6e-34       3     137 ..      43     177 ..      41     203 .. 0.93

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 1e-37
                     EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS-TTSEEEEEEES-----SGGGGGGSTTSH CS
  Methyltransf_4   3 pvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllelledgslekifilFPDPwfKkrhhKrRllqp 97 
                     +++l++G G+G+f+++ A knP+  +++iE++ ++v+k+ +k+++l+lkNlr+++    ++ll+   + s+++i+ilFPDPw+K+rhhKrR ++ 
      CCG93174.1  43 SLILDLGAGEGSFIIDYAIKNPQACLFAIEKKISRVRKIASKARRLNLKNLRVIHCCWEQFLLRHCMPSSIDEIHILFPDPWPKRRHHKRRSIKA 137
                     689***************************************************999999999999999************************** PP

                     HHHHHHHHHEEEEEEEEEEESHHHHHHHHHHHHHCSTTEE CS
  Methyltransf_4  98 ellkelarvLkkgGvlelaTDveeyaeemlkvleeeplfe 137
                      +++++a+vLk++G+ +l TD  ey+ ++ k ++    fe
      CCG93174.1 138 PVVQAIADVLKPNGICRLLTDNREYFVWSEKLFHLSGYFE 177
                     *****************************99988776666 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   2.2e-10   5.6e-07       7     113 ..      45     159 ..      41     195 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2.2e-10
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsnevl...........nal 87 
                      +lDlG+G+G +++  a   +p+a ++ i+ +   +++  ++a++l+l+n+++ ++ +e+ l  + +  +++D i+    l              
       CCG93174.1  45 ILDLGAGEGSFIIDYA-IKNPQACLFAIEKKISRVRKIASKARRLNLKNLRVIHCCWEQfLLRHcMP-SSIDEIHI---LfpdpwpkrrhhKRR 133
                      8***************.99****************************************99988666.99999776...224566888876778 PP

  Methyltransf_31  88 adpdkileeiervlkpggilliedpr 113
                      + ++ + + i +vlkp+gi+ + + +
       CCG93174.1 134 SIKAPVVQAIADVLKPNGICRLLTDN 159
                      88999999************986655 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.8e-07   0.00096       8      69 ..      41     101 ..      37     119 .. 0.83
   2 ?   -3.1   0.0         2     5e+03     118     133 ..     137     152 ..     130     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.8e-07
                      TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CT CS
  Methyltr_RsmB-F   8 eeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDar 69 
                      ++  ilDl a+ G+      ++ +++++++A++++ +R++++a+  +rL+++n+ v++    
       CCG93174.1  41 NGSLILDLGAGEGSFIIDY-AIKNPQACLFAIEKKISRVRKIASKARRLNLKNLRVIHCCWE 101
                      6678999999888643332.35789******************************9987555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2
                      HHHHHHHCCCEEEEEE CS
  Methyltr_RsmB-F 118 kellsaaidllkkgGv 133
                        +++a++d+lk++G+
       CCG93174.1 137 APVVQAIADVLKPNGI 152
                      5578999999999996 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.6e-06    0.0042       1      97 []      45     151 ..      45     151 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.6e-06
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBS...SSTTTEEEEEE.....EST.GGGSSHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlp...fedgsfDlvvs.....sga.lhhlsdedlek 84 
                      +LdlG+G+G ++++ a + ++a + +++   + +++++++a++ +l n++++++  e++       +s+D +++     +    hh  ++  + 
       CCG93174.1  45 ILDLGAGEGSFIIDYAIKNPQACLFAIEKKISRVRKIASKARRLNLkNLRVIHCCWEQFLlrhCMPSSIDEIHIlfpdpWPKrRHHKRRSIKAP 138
                      8**************999779********************999999*********99642234677999999955555333345666666677 PP

                      HHHHHHHHEEEEE CS
  Methyltransf_25  85 alkeiarvLkpgG 97 
                      +++ ia+vLkp+G
       CCG93174.1 139 VVQAIADVLKPNG 151
                      9**********99 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.2e-06     0.013      49     106 ..      42      99 ..      32     113 .. 0.88
   2 ?   -2.8   0.0       1.3   3.3e+03     120     143 ..     152     175 ..     136     176 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.2e-06
                 C-.EEEETSTTTTTHHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT-SSEEEEES- CS
        GidB  49 rdkviDvGsGaGlPGipLaiarpelkltLleslekkiaFLeevkeelklenveivear 106
                  + ++D+G+G G   i  ai +p+  l  +e++  +++ ++   ++l+l+n+++++  
  CCG93174.1  42 GSLILDLGAGEGSFIIDYAIKNPQACLFAIEKKISRVRKIASKARRLNLKNLRVIHCC 99 
                 3349***************************************************965 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.3
                 EEC-SSSHHHHHHHHCCCEEEEEE CS
        GidB 120 tsRAlaslnelteillkllkeggl 143
                 ++R l   +e++ +++kl +  g+
  CCG93174.1 152 ICRLLTDNREYFVWSEKLFHLSGY 175
                 456666667777777777666665 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.6e-06     0.012      34     139 ..      44     157 ..      33     173 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.6e-06
                 EEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC....EEEEE-ST.TTTSTTS-EEEE.EE--.-S.TTTCHCHHHHHHHHHHH CS
         MTS  34 kvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle....vevvasdv.leeveekkfdli.vsNP.Pf.hagkatelavaeeliae 124
                  +lDlG+G G   +  a ++p+a + +++++   ++     +++ +l+    +++ +++  l +  + ++d i +  P P  ++ ++++ ++   ++++
  CCG93174.1  44 LILDLGAGEGSFIIDYAIKNPQACLFAIEKKISRVRKIASKARRLNLKnlrvIHCCWEQFlLRHCMPSSIDEIhILFPdPWpKRRHHKRRSIKAPVVQA 142
                 59***************************9987776555555555554455888888875156777888886533333244144455577888888888 PP

                 HHHHEEEEEEEEEEE CS
         MTS 125 AkeaLkegGeLliVa 139
                  +++Lk++G  ++ +
  CCG93174.1 143 IADVLKPNGICRLLT 157
                 899999999776655 PP

>> DRE2_N  Fe-S cluster assembly protein DRE2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.8e-05      0.17      51      93 ..     113     159 ..     108     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.8e-05
                 --SEEEE---......SS-S----HHHHHHHHTT--TT--EE---H. CS
      DRE2_N  51 Ydlvllltde....eeeeeelliprkliqkivkaLkpgGklkgqdgk 93 
                  d++++l ++      ++++++i+  ++q+i++ Lkp+G  +  +++
  CCG93174.1 113 IDEIHILFPDpwpkRRHHKRRSIKAPVVQAIADVLKPNGICRLLTDN 159
                 599*****999*996777899999***************98877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1428.26
//
Query:       CCG93175.1  [L=126]
Description: Dimeric dUTPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-26   91.2   1.4    5.8e-19   68.9   0.9    2.0  2  dUTPase_2    dUTPase
    1.2e-05   25.6   0.0    1.5e-05   25.3   0.0    1.2  1  PRA-PH       Phosphoribosyl-ATP pyrophosphohydrolase
  ------ inclusion threshold ------
      0.031   14.5   0.0      0.047   13.9   0.0    1.3  1  MazG         MazG nucleotide pyrophosphohydrolase domain
      0.095   13.2   2.1       0.13   12.8   0.1    2.2  3  Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) pr


Domain annotation for each model (and alignments):
>> dUTPase_2  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.9   1.3e-22   5.8e-19       1      83 [.       6      86 ..       6      87 .. 0.94
   2 !   22.3   0.0   2.6e-08   0.00012     137     166 .]      86     115 ..      84     115 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 1.3e-22
                HHHHHHHHHHHHHHHHSTTH.....HH-HHHHH....HHHHHHHHHHHTTS.---SSSSTT---HHHHHHHHHHHHHHHHHHH CS
   dUTPase_2  1 dlksllelQkeLderiekkwnlkkkrkklsdwleekllAllvElaElanetrsfKyWknkkksdlekvleElvDilHFllsla 83
                +l +++elQk+L+ +i  + +++++++  ++wl +  +A+  ElaEl++++ ++K+W + +k dl++ + E++D lHFl+s a
  CCG93175.1  6 KLDQIFELQKKLNLKIGVDPTTMDQET-RIQWLLNYTRAIGQELAELVDSI-PWKWWAKYQKFDLQNARVEVIDLLHFLVSTA 86
                5899**************997777776.78999999***************.****************************976 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 2.6e-08
                 HHHHTS-...HHHHHHHHHHHHHHHHHTTT CS
   dUTPase_2 137 aellgfneeelvkaYvaKnelNlkRqengY 166
                 a+llg++ e+l++aY +K+ +N kR+++gY
  CCG93175.1  86 AQLLGMSPEDLFEAYHKKHMVNVKRIDEGY 115
                 789**************************9 PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.4e-09   1.5e-05       4      83 .]      13     104 ..      10     104 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 3.4e-09
                 HHHHCT----SS-----HHHHHH....HHHHHHHHHHHHHHHT-SC........HHHHHHHHHHHHHHHHHHHHHHCT--CHHHHHHHHHHH CS
      PRA-PH   4 fhrligerkpetPeastaelasl....raaligEEavElleaaseg........dlaeladelaDllYvtygllvllGidldavfeevhran 83 
                 +++ ++ ++  +P+ +++e+  +       +ig E++El+++   +        dl++   e++Dll ++  +++llG++++++fe  h+++
  CCG93175.1  13 LQKKLNLKIGVDPTTMDQETRIQwllnYTRAIGQELAELVDSIPWKwwakyqkfDLQNARVEVIDLLHFLVSTAQLLGMSPEDLFEAYHKKH 104
                 5566666666677777555555556668999**********7765555556667*********************************99875 PP

>> MazG  MazG nucleotide pyrophosphohydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.1e-05     0.047       4      65 ..      38     103 ..      35     109 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHHHHHHHHT........T-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH CS
        MazG   4 etllaylleEvgEvaeaIkk........edrdeleeELGDvLlqvlflaniaeeeggidledvaetileK 65 
                 +++++++ +E  E+++ I           d ++ + E+ D+L  +++ a++    +g++ ed +e+  +K
  CCG93175.1  38 LNYTRAIGQELAELVDSIPWkwwakyqkFDLQNARVEVIDLLHFLVSTAQL----LGMSPEDLFEAYHKK 103
                 67899999**********88788888767777******************9....*********988887 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.41   1.8e+03      56      62 ..      12      18 ..       1      54 [. 0.63
   2 ?   -1.5   0.0       0.8   3.6e+03      35      48 ..      58      71 ..      36      79 .. 0.68
   3 ?   12.8   0.1   2.8e-05      0.13      10      39 ..      93     122 ..      84     126 .] 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.41
  Fungal_TACC 56 qLkkqle 62
                 +L+k+l+
   CCG93175.1 12 ELQKKLN 18
                 4444443 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.8
  Fungal_TACC 35 kyqkkldklelenk 48
                 k+  k +k +l+n 
   CCG93175.1 58 KWWAKYQKFDLQNA 71
                 55566666666654 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 2.8e-05
  Fungal_TACC  10 aedLYvqYSsKHEqKVkllkkgyeakyqkk 39 
                   edL+  Y +KH   Vk + +gy  k +++
   CCG93175.1  93 PEDLFEAYHKKHMVNVKRIDEGYHFKDEND 122
                  69*********************7776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 840.31
//
Query:       CCG93176.1  [L=148]
Description: Predicted thiol-disulfide oxidoreductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-20   73.0   0.0    5.7e-20   72.8   0.0    1.1  1  DUF393           Protein of unknown function, DUF393
  ------ inclusion threshold ------
      0.049   13.6   0.0      0.068   13.1   0.0    1.2  1  PepSY_TM_like_2  Putative PepSY_TM-like


Domain annotation for each model (and alignments):
>> DUF393  Protein of unknown function, DUF393
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   6.3e-24   5.7e-20       1     113 []      16     131 ..      16     131 .. 0.88

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 6.3e-24
      DUF393   1 vlyDgeCplCnravqflerrdrkgrirfadlqsasgkallkelgidaeqldslllv.ieagr....vysgsdAaleiaralpglwrllalllvlprlkk 94 
                 +++Dg C lCn++v+f+ r+d+++ + fa+ q++  ++ +  ++ +a+ +ds++l+ +++++     + +s+A++ei+++l g + l  +l ++p    
  CCG93176.1  16 IFFDGICVLCNSFVSFVLRKDKNHSFLFAPRQGKLFEKFQWLMSPEAKMADSIVLCrYNDKKhkweFFIESQAVVEILKSLTGFYLLGLMLSFFPTS-- 112
                 8******************************9888877554455558889999999887777999999***************77777777778888.. PP

      DUF393  95 lrdalYrliarnRyrlfgr 113
                 +++ lYr+ia+nRy+lfg+
  CCG93176.1 113 FLNKLYRIIAKNRYKLFGK 131
                 *****************96 PP

>> PepSY_TM_like_2  Putative PepSY_TM-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.6e-06     0.068     143     169 ..      78     104 ..      70     115 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.6e-06
  PepSY_TM_like_2 143 eaWswfiDvfAvalvlfsltGllllql 169
                      + W++fi+  Av+ +l sltG++ll l
       CCG93176.1  78 HKWEFFIESQAVVEILKSLTGFYLLGL 104
                      68**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1127.02
//
Query:       CCG93177.1  [L=250]
Description: Glycosyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-26   90.8   0.0    1.1e-25   90.5   0.0    1.2  1  Glycos_transf_2  Glycosyl transferase family 2
    4.2e-09   36.6   0.0    2.2e-07   31.0   0.0    2.0  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    1.4e-08   34.5   0.0    2.2e-08   34.0   0.0    1.2  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
     0.0012   19.3   0.0     0.0024   18.3   0.0    1.5  1  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   2.4e-29   1.1e-25       1     170 []       5     174 ..       5     174 .. 0.94

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 2.4e-29
                      EEEEEESS-TTTHHHHHHHHHHH.GGCCEEEEEEEEES-SSCHHHHHGGGCH..C-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaq.dpypdfeiivvDDgStDetveileelak..edprvrvirreenvGkagalnaglraatgdyilflDaDde 91 
                      svv p+yNeek ++e+ +s+++     p++e ++v+DgStD+t ++l++  k   + +v +i  + n+Gk+ a+ +g+r+++gd ++flD D++
       CCG93177.1   5 SVVLPVYNEEKIIQEVSRSICQFsIQNPRYEFVFVNDGSTDNTGNLLKAVLKeyASAHVQLIDYKTNKGKGYAIKEGFRHTRGDNFCFLDGDLA 98 
                      8**********************99******************9999999999999************************************** PP

                      E-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHCH CS
  Glycos_transf_2  92 pdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrealeell 170
                      ++ d+l+ + e+l+    d+++g+r   +++    +  +r ++   +++k   + l+   s+   +  ++rr ++e+l+
       CCG93177.1  99 YPLDYLPLFEEKLQS--CDIAIGSRISEKKGFCLERSLRR-KFLGYCFNKLVGFILDLPYSDTQAGLKAFRRTVAEKLF 174
                      ***************..77999999988887776666555.79999***************************999986 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0     5e-11   2.2e-07       4      98 ..       4      97 ..       2     115 .. 0.90
   2 ?    3.7   0.0     0.011        48     166     218 ..     164     218 ..     155     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 5e-11
  Glyco_tranf_2_3  4 lavlVptfneedvlgevlesll..aqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDdD 97
                     ++v+ p++nee+ + ev +s+   ++++pr+e+v+v d+s++ t + ++++ +++  ++v+++ +++  + +gk +a++e++r++++d   ++D+D
       CCG93177.1  4 FSVVLPVYNEEKIIQEVSRSICqfSIQNPRYEFVFVNDGSTDNTGNLLKAVLKEYASAHVQLI-DYK--TNKGKGYAIKEGFRHTRGDNFCFLDGD 96
                     79*******************9444457****************************99***87.666..6689**********************9 PP

  Glyco_tranf_2_3 98 t 98
                      
       CCG93177.1 97 L 97
                     6 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.011
  Glyco_tranf_2_3 166 lirrevlkelegldplflltdDyelglrlrragfrtay..vpgaavrevfpsslk 218
                      ++rr+v + l +l++   +  D+el + +r+ g+++    v+ +a+ ++++s++k
       CCG93177.1 164 AFRRTVAEKLFKLQRIEGFSFDVELIFLARKLGYKVEEipVKVSATHSYKHSKIK 218
                      89********77777677779***************9634666667777777655 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   4.8e-12   2.2e-08       1      99 [.       5     104 ..       5     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 4.8e-12
  Glyco_tranf_2_2   1 svviplraseerhyieervlqkakyy..deeielivvddgSsekfleevssiidlnllvylkdeddk.ayslaaarNrGaskaesdlvlFlDaD 91 
                      svv+p++++e+   i+e  + + ++   ++  e+++v+dgS++++ + ++++ +      ++  d k   +++ a   G+ ++ +d   FlD+D
       CCG93177.1   5 SVVLPVYNEEKI--IQEVSRSICQFSiqNPRYEFVFVNDGSTDNTGNLLKAVLKEYASAHVQLIDYKtNKGKGYAIKEGFRHTRGDNFCFLDGD 96 
                      89*******999..9998888877767799********************998866555444444453789*********************** PP

  Glyco_tranf_2_2  92 cfissDkf 99 
                        + +D +
       CCG93177.1  97 LAYPLDYL 104
                      98888865 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   5.4e-07    0.0024       1      53 [.      11      69 ..      11      97 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.4e-07
  Glyco_tranf_2_4  1 rneadiLpeflahhlalgfdr....ilvydndstDgtrailkel.pevkllhvdk.sye 53
                     +ne++i++e+ + ++++ +++    +++++++stD+t ++lk+  +e+   hv+  +y+
       CCG93177.1 11 YNEEKIIQEVSRSICQFSIQNpryeFVFVNDGSTDNTGNLLKAVlKEYASAHVQLiDYK 69
                     69**********9999996433344****************994355555555542333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2164.83
//
Query:       CCG93178.1  [L=262]
Description: Predicted xylanase/chitin deacetylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-10   38.6   0.0    1.6e-09   37.7   0.0    1.5  1  Polysacc_deac_1  Polysaccharide deacetylase
    1.1e-08   35.2   0.0    1.5e-08   34.7   0.0    1.3  1  DUF3473          Domain of unknown function (DUF3473)
  ------ inclusion threshold ------
      0.069   13.2   0.1         11    6.3   0.0    3.2  3  LRR_6            Leucine Rich repeat


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   2.7e-13   1.6e-09      18      75 ..      34      91 ..       4     128 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 2.7e-13
                     CSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSH CS
  Polysacc_deac_1 18 rdntteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhsnlkrls 75
                     +++ +++l++L+k+ +k tff + + + +  ++++++ asG+ei++H+ +h+ + + +
       CCG93178.1 34 NEGAEALLELLQKKALKVTFFTTASFALKKTELLKTILASGHEIASHGLSHNPIGKDE 91
                     788999********************99999********************9874433 PP

>> DUF3473  Domain of unknown function (DUF3473)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   2.6e-12   1.5e-08       1     127 [.     133     253 ..     133     256 .. 0.73

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.6e-12
     DUF3473   1 SSvfPvr.hdlyGipdaprkpfrikkekgkllElPvstlklggrnlplaGGgyfRlfPyalikallrrlnregrpavlYfHpwEldpdqprvkgaslks 98 
                 SS++P++  ++y + ++prk f  +     l+++P+st+ l+  ++pl+    f+ +P++l+k +  ++ +e+ ++ ++fHpwE+ + q+  +  ++ +
  CCG93178.1 133 SSINPTWlPGRYNYLSLPRKIFCEQG----LVQIPISTTPLF--RIPLC-WLTFKNIPLSLFKTFSLWTLQEKGYLNIFFHPWEFTNIQK-YPIPKVAK 223
                 9******889999******9665554....9*******9988..66666.235778*****************************88775.33233444 PP

     DUF3473  99 rfrhylnlkrteerlrrll.sdfeFttvee 127
                  +   + l+r e  +  l   +++F+t+++
  CCG93178.1 224 AIDGLVLLQRLEVYISWLQsLEVRFCTLND 253
                 555555555555555554433555666555 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.043   2.6e+02      14      23 ..      31      40 ..      31      41 .. 0.87
   2 ?    0.6   0.0      0.13     8e+02      10      17 ..      82      89 ..      81      90 .. 0.85
   3 ?    6.3   0.0    0.0019        11       3      18 ..     239     254 ..     237     255 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.043
       LRR_6 14 dIgDeGaeaL 23
                ++++eGaeaL
  CCG93178.1 31 QVSNEGAEAL 40
                5799*****9 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.13
       LRR_6 10 LsgNdIgD 17
                Ls+N Ig 
  CCG93178.1 82 LSHNPIGK 89
                9*****95 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0019
       LRR_6   3 thLteLdLsgNdIgDe 18 
                 ++L++L+++++ ++D+
  CCG93178.1 239 SWLQSLEVRFCTLNDV 254
                 68***********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1841.55
//
Query:       CCG93179.1  [L=389]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-09   37.8  21.3    1.7e-09   37.8  21.3    1.9  2  GT87      Glycosyltransferase family 87


Domain annotation for each model (and alignments):
>> GT87  Glycosyltransferase family 87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3     0.085   1.5e+03     127     147 ..       6      26 ..       1      47 [. 0.54
   2 !   37.8  21.3   9.3e-14   1.7e-09       1     233 [.      60     288 ..      60     296 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.085
        GT87 127 ralaaaaatalvltalpllll 147
                 +a+a  +++ ++++ l+ll++
  CCG93179.1   6 WAFASIVLWSVLVVSLSLLIF 26 
                 334444444444444444443 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 9.3e-14
        GT87   1 FtYPPfaallfaplallpyglalalwallnlaalllalrlllrrlgralasavalalllaalalepvlstlgfGqinllllllvlldllllrrrrpll. 98 
                 F+Y P++a++f+p+allp+ +  +lw +++l+ +++alr l++ +     + + +     +l l + l  +  Gq nl l   ++l++l+   ++++l 
  CCG93179.1  60 FLYFPHFAIFFTPFALLPPIPREILWRIFSLLIFVGALRKLTTSFFPLYPDKIFFYF--SLLILFSALASIRNGQTNLALSGSLVLSFLACG-EKHWLk 155
                 99****************************************998654344433333..24455555789**********999999988888.678987 PP

        GT87  99 aGlliGlaaaiKltPalfllylllrrrwralaaaaatalvltal.pllllp......pssleyfletlfdtseriaedvgnqsllslagllaralalgl 190
                 a++++ l  + K  P+++  +  ++  +  +  +a++  +l++l p+ +         +++  f++ ++  s+  +  ++  ++++l ++++   +l++
  CCG93179.1 156 AAFFFFLSLIFK--PIALFPFVYATIFYPSFKKTAFWLFLLFVLfPFFFCLdhplyiVEQYLLFMKRMTTVSQ--PNEANFADIQGLFHVVHG--ELPF 248
                 ************..99999988888888888888888888888888888874444444455555553333323..333333332234444444..3333 PP

        GT87 191 savtllwlvlvllvvalaavaawrlrrrerllalaaallvall 233
                  a +l+   l++++++l+a+++ r+   + +l+++++l    +
  CCG93179.1 249 -ALSLVIRSLAAIGIILLAFRLKRW--SKSPLFFSMLLYSFST 288
                 .445666666666677777777776..6666777654444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2898.75
//
Query:       CCG93180.1  [L=257]
Description: Imidazole glycerol phosphate synthase subunit hisF [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-79  265.1   0.2    5.2e-79  264.9   0.2    1.0  1  His_biosynth  Histidine biosynthesis protein
    1.6e-09   37.6   1.4    0.00032   20.2   0.0    2.1  2  NMO           Nitronate monooxygenase
    2.1e-07   30.3   0.0    0.00096   18.3   0.0    2.2  2  Dus           Dihydrouridine synthase (Dus)
    3.6e-06   26.5   0.5       0.01   15.2   0.2    2.3  2  ThiG          Thiazole biosynthesis protein ThiG
    1.9e-05   24.1   0.1      0.013   14.8   0.0    2.2  2  TMP-TENI      Thiamine monophosphate synthase
    2.5e-05   23.8   0.1     0.0015   18.0   0.0    2.2  2  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
    3.9e-05   22.8   1.0        0.1   11.6   0.0    2.1  2  IMPDH         IMP dehydrogenase / GMP reductase domain
     0.0044   16.3   0.0       0.14   11.4   0.0    2.1  2  DHO_dh        Dihydroorotate dehydrogenase
  ------ inclusion threshold ------
      0.031   13.3   0.8       0.44    9.5   0.1    2.1  2  FMN_dh        FMN-dependent dehydrogenase
      0.053   12.6   0.0       0.11   11.6   0.0    1.4  1  Glu_synthase  Conserved region in glutamate synthase
      0.068   12.9   0.1       0.13   12.0   0.1    1.5  1  SAP           SAP domain


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.9   0.2   3.2e-82   5.2e-79       1     228 [.       5     239 ..       5     240 .. 0.96

  Alignments for each domain:
  == domain 1  score: 264.9 bits;  conditional E-value: 3.2e-82
                   EEEEEEEEETTEEEEECTTCS..TCEEEETTSHHHHHHHHHHHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT CS
  His_biosynth   1 riipalDlkdGkvVrlvkGdr..fqelryagdpvelakryeeegadelhvvDldaakegreanldlveeiaeevfipvqvGGGIrsledveelleag 95 
                   riip+lD++ G+v r +k  r    el++ gdp  la +y+eegade++++D++a++egr+a l+++e +a+++fip++ GGGIr+led++++l +g
    CCG93180.1   5 RIIPCLDVHAGRVTRGKKFGRaeLGELTDVGDPTLLALKYNEEGADEIVFYDITASHEGRGALLNVLESVARRCFIPITAGGGIRTLEDIRQVLLSG 101
                   8*************66663333456899********************************************************************* PP

                   -SEEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEEC....EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---HHHHHHHHH CS
  His_biosynth  96 adkviigtaavknpelikelaekfgsqkivvaiDarrg....ykvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdleltkelae 188
                   adkv+++taa++np+li++ a+kfgsq+iv++iDa+r+    +kv+ +g+r+et +++v++akk  e+gagei++++id+dG+++G+dl+l+++l++
    CCG93180.1 102 ADKVSLNTAALENPSLIEDGAKKFGSQCIVLSIDAKRKqtneWKVFSHGGRKETPWEVVSWAKKGVEMGAGEIVINSIDADGMKEGYDLDLIRSLSR 198
                   *************************************55668******************************************************* PP

                   HHSSEEEEESS--SHHHHHHHHHTTC.SEEEESHHHHTTSS CS
  His_biosynth 189 avkipviasGGvgsledlkelksegv.davivgsalyegel 228
                   +v++pv+asGG+g++ed++ + + g  dav+++ +++ ge+
    CCG93180.1 199 TVSVPVVASGGAGKMEDFALALEIGQaDAVLAAGVFHRGEI 239
                   ************************999***********997 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     2e-07   0.00032     180     226 ..      66     112 ..      41     134 .. 0.83
   2 !   16.4   0.5   2.7e-06    0.0045     149     222 ..     163     230 ..     157     249 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2e-07
         NMO 180 glfaLvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqigtrfL 226
                  l++++++v+    iP+ A GGi + +++  +L  GA  v + t+ L
  CCG93180.1  66 ALLNVLESVARRCFIPITAGGGIRTLEDIRQVLLSGADKVSLNTAAL 112
                 35566666666666*****************************9976 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 2.7e-06
         NMO 149 arkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqig 222
                 a+k  ++Ga  ++++  +a G++    +     + L+ +    v++Pv+A GG  + ++ a aL +G + + ++
  CCG93180.1 163 AKKGVEMGAGEIVINSIDADGMKE--GY----DLDLIRSLSRTVSVPVVASGGAGKMEDFALALEIGQADAVLA 230
                 566677788888888888888876..44....589********************************6555444 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   5.9e-07   0.00096     176     227 ..      72     123 ..      45     149 .. 0.86
   2 !   10.2   0.0   0.00017      0.28     168     213 ..     186     231 ..     150     250 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.9e-07
                 HHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHH.HH CS
         Dus 176 kevkqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfae.st 227
                 ++v ++  ip+ a G+I+++ed++++l   Gad v    +al+nP l++   +
  CCG93180.1  72 ESVARRCFIPITAGGGIRTLEDIRQVLLS-GADKVSLNTAALENPSLIEDgAK 123
                 56777778*******************98.*****************986444 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00017
                 CG--CHHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEES CS
         Dus 168 gtadweaIkevkqavsipviaNGdIkdaedaqaileetGadgvmig 213
                 +  d++ I+++ + vs+pv+a G+  ++ed   +le   ad+v+++
  CCG93180.1 186 EGYDLDLIRSLSRTVSVPVVASGGAGKMEDFALALEIGQADAVLAA 231
                 5578999******************************999999876 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00031      0.51     165     207 ..      69     111 ..      34     140 .. 0.86
   2 !   15.2   0.2   6.3e-06      0.01     165     204 ..     191     231 ..     160     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00031
                 HHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEESHHH CS
        ThiG 165 ealkiiieeakvPvivDAGigspsdaaqamelGadavllntav 207
                 ++l+ + +++ +P+    Gi++ +d+ q++  Gad v lnta 
  CCG93180.1  69 NVLESVARRCFIPITAGGGIRTLEDIRQVLLSGADKVSLNTAA 111
                 46889999999******************************96 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 6.3e-06
                 HHHHHHHHH-SS-BEEES---SHHHHHHHHHTT.-SEEEES CS
        ThiG 165 ealkiiieeakvPvivDAGigspsdaaqamelG.adavlln 204
                   ++ + ++++vPv+   G g+ +d a a+e+G adavl +
  CCG93180.1 191 DLIRSLSRTVSVPVVASGGAGKMEDFALALEIGqADAVLAA 231
                 4567778899***********************56888865 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   7.9e-06     0.013     109     178 ..      41     108 ..      35     111 .. 0.82
   2 !    7.3   0.0    0.0017       2.7     135     160 ..     186     211 ..     163     231 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.9e-06
    TMP-TENI 109 aeeaealgadYigvGpifpTdtKkdaeplgleglkelaealeiPvvaiGGi.tlenvaevleagadgvavv 178
                 a++ +++gad i++  i  T++++++  + l+ l+ +a+++ iP+ a GGi tle++ +vl +gad v++ 
  CCG93180.1  41 ALKYNEEGADEIVFYDI--TASHEGRG-ALLNVLESVARRCFIPITAGGGIrTLEDIRQVLLSGADKVSLN 108
                 56777888888888888..78887773.3478899999*************557*************9875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0017
    TMP-TENI 135 eplgleglkelaealeiPvvaiGGit 160
                 e  +l++++ l++++++Pvva GG  
  CCG93180.1 186 EGYDLDLIRSLSRTVSVPVVASGGAG 211
                 667899******************85 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   8.9e-07    0.0015     127     170 ..      67     110 ..      65     112 .. 0.90
   2 ?    3.5   0.0     0.025        40     129     161 ..     191     223 ..     184     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 8.9e-07
                   GHHHHCTSTTS...EEEEESS--SHHHHHHHCTT.SSEEEE--H CS
  G3P_antiterm 127 vpkvikeikkelkipiiaGGLietkedveealkaGaiavstsnk 170
                   + +v++++ +++ ipi aGG i+t ed++++l +Ga+ vs  + 
    CCG93180.1  67 LLNVLESVARRCFIPITAGGGIRTLEDIRQVLLSGADKVSLNTA 110
                   56799999*******************************98765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.025
                   HHHCTSTTS...EEEEESS--SHHHHHHHCTT. CS
  G3P_antiterm 129 kvikeikkelkipiiaGGLietkedveealkaG 161
                   ++i+++++++++p++a+G   + ed   al+ G
    CCG93180.1 191 DLIRSLSRTVSVPVVASGGAGKMEDFALALEIG 223
                   67999*************999999999999887 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   6.3e-05       0.1     195     235 ..      66     107 ..      61     116 .. 0.86
   2 !    9.5   0.6   0.00026      0.43     174     239 ..     169     234 ..     160     254 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.3e-05
                 HHHHHHH.HHCTCT-EEEEES---SHHHHHHHHHTT-SEEEE CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 195 Avaevae.aakkagvpviaDGGikysgdivkAlaaGadavml 235
                 A+++v e +a++  +p+ a GGi++ +di + l  Gad v l
  CCG93180.1  66 ALLNVLEsVARRCFIPITAGGGIRTLEDIRQVLLSGADKVSL 107
                 56666664788889************************9965 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00026
                 SS-STTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT.-SEEEESCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
       IMPDH 174 iGpGsiCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaG.adavmlGsll 239
                 +G+G i +   + + G+ +   +  + +  ++  vpv+a GG  + +d + Al +G adav+   ++
  CCG93180.1 169 MGAGEIVIN-SIDADGMKEGYDLDLIRSLSRTVSVPVVASGGAGKMEDFALALEIGqADAVLAAGVF 234
                 677777665.45667777777777888889999**********************978888876665 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   8.5e-05      0.14     233     281 ..      70     115 ..      64     125 .. 0.82
   2 ?    2.8   0.0     0.033        54     231     289 ..     190     246 ..     186     251 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.5e-05
                 HHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGT CS
      DHO_dh 233 virelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegp 281
                 v+ ++++r    ipi + GGi + eD    +  GA  v + ta   e+p
  CCG93180.1  70 VLESVARRCF--IPITAGGGIRTLEDIRQVLLSGADKVSLNTAA-LENP 115
                 5555666666..******************************98.4554 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.033
                 HHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHHH CS
      DHO_dh 231 lkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpkiakkikk 289
                 l +ir+l+++++  +p++++GG    eD    +e G +   + +++  +g   + ++kk
  CCG93180.1 190 LDLIRSLSRTVS--VPVVASGGAGKMEDFALALEIGQADAVLAAGVFHRGEIHIAELKK 246
                 578999999999..********9999996555555544444555555556555555555 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00027      0.44     257     299 ..      67     107 ..      59     117 .. 0.82
   2 ?    2.3   0.1     0.044        71     132     241 ..     122     228 ..     113     232 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00027
                 HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEE CS
      FMN_dh 257 tidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavll 299
                  ++vL ++++++   i++ + gGir+ +D+ + l  GAd v l
  CCG93180.1  67 LLNVLESVARRCF--IPITAGGGIRTLEDIRQVLLSGADKVSL 107
                 3556666666665..************************9976 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.044
                 HHHCTESEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH..THHHHHHCCCHB-TC--HHHHHHHHHHHSSEEEEEE.E-SHHH CS
      FMN_dh 132 aeaagykalvltvDtpvlgkRerdlrngfslppklklrnllqelakpewaaealkkasaaaefvgkqldpsltwddikwlreqtklplvvKG.vltaed 229
                 a++ g + +vl +D+      e+++ ++    +k   ++ ++++   +   e+ + +   +++ ++ +++  + d i+ l +++++p+v  G   + ed
  CCG93180.1 122 AKKFGSQCIVLSIDAKRKQTNEWKVFSHG--GRK---ETPWEVVSWAKKGVEMGAGEIVINSIDADGMKEGYDLDLIRSLSRTVSVPVVASGgAGKMED 215
                 66778888888888877776666665522..222...11222222222222222122223466666778888999999999999999998751578889 PP

                 HHHHHHTT.ESEE CS
      FMN_dh 230 akraveaG.vdgi 241
                   +a+e+G +d++
  CCG93180.1 216 FALALEIGqADAV 228
                 9999988855555 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.7e-05      0.11     269     307 ..      74     112 ..      66     114 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.7e-05
                   TT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHH CS
  Glu_synthase 269 eglrdrvsliadGglktgadvvkalalGAdavgigtaal 307
                      r  + ++a Gg++t +d+   l+ GAd+v++ taal
    CCG93180.1  74 VARRCFIPITAGGGIRTLEDIRQVLLSGADKVSLNTAAL 112
                   5556678899**************************997 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   8.2e-05      0.13       7      20 ..     242     255 ..     241     256 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.2e-05
                 HHHHHHHHHTT--T CS
         SAP   7 aeLKeeLkkrGLpt 20 
                 aeLK++Lk+rGL++
  CCG93180.1 242 AELKKYLKERGLAI 255
                 8***********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1845.80
//
Query:       CCG93181.1  [L=173]
Description: tRNA (Cytosine34-2'-O-)-methyltransferase, SpoU class [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-31  107.3   0.0    8.2e-31  107.1   0.0    1.0  1  SpoU_methylase  SpoU rRNA Methylase family


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.0   4.6e-35   8.2e-31       4     142 .]      19     157 ..      16     157 .. 0.94

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 4.6e-35
                     EEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST.T-SEGCCSHHHTTE CS
  SpoU_methylase   4 vvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl.kgkslseidlkekv 97 
                     +vlv +++p+N+G+iaR ++a++  el+l++p +++l+n  +kra++++++ +++  ++ ++ +l++ +e+  +l+ +++    ++ +++++ + 
      CCG93181.1  19 IVLVAPQIPQNTGNIARICAATNS-ELHLIEPLGFSLDNAAMKRAGVDYWKAVKMSLWKGWDFFLEKQRER--RLFFFETgTYPPYFTASFQPHD 110
                     9**********************9.******************************************9999..88888773555666******** PP

                     EEEEEBTTTBS-HHHHCTSS.EEEE---.-TTSSS--HHHHHHHHHH CS
  SpoU_methylase  98 alvfGnEdkGlsnellelad.rlvkIpm.sgeveSLNvavAvailly 142
                     ++vfG+E+kGls+ +l+l    + +Ip+ +++v+SLN+a++v+i+ly
      CCG93181.1 111 IFVFGRETKGLSQRILSLSPqSIFSIPIlNPSVRSLNLANCVSIILY 157
                     *******************95699***99****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1244.19
//
Query:       CCG93182.1  [L=153]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   12.2   0.2       0.25   11.1   0.2    1.5  1  Collectrin  Renal amino acid transporter


Domain annotation for each model (and alignments):
>> Collectrin  Renal amino acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   1.4e-05      0.25     105     152 ..     105     152 ..     103     153 .] 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.4e-05
  Collectrin 105 tLeflgilptLappveppvtiWlivfgvvmgvvvvgivlLivsgirer 152
                 tL   +i++ L++p + p++ W+ +++  +++++v++  L + gi+++
  CCG93182.1 105 TLWIGYIVARLSTPGHIPMNLWMGIYALFLALIAVAFHELFFKGIKKK 152
                 56666899************************************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1192.94
//
Query:       CCG93183.1  [L=257]
Description: tRNA pseudouridine synthase A [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-36  125.1   0.0    3.4e-23   82.2   0.0    2.1  2  PseudoU_synth_1  tRNA pseudouridine synthase
  ------ inclusion threshold ------
       0.18   11.6   0.0       0.25   11.2   0.0    1.2  1  DUF2344          Uncharacterized protein conserved in bacteri


Domain annotation for each model (and alignments):
>> PseudoU_synth_1  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   2.1e-14   1.9e-10       4     107 ..      13     107 ..      10     108 .. 0.93
   2 !   82.2   0.0   3.8e-27   3.4e-23       1     108 []     147     250 ..     147     250 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 2.1e-14
  PseudoU_synth_1   4 elvGthdfgsfckqkqekkntvrtileaaieevsgeekellvvtvkgsgFldhqVRamvgvlfavgqgklspedvkellnakkrkkiavetapa 97 
                      +++Gt + g +  qkq +  tv++ le a++++ ++     +++++g++++d++V+a ++v+  +   kl+ e ++++ln+ +++ i v  +  
       CCG93183.1  13 SYCGTGFHG-W--QKQGQLPTVQRFLEEAVAKIWQT-----EIHIEGASRTDAGVHAKGQVASFIAPRKLEAEVLQRALNYYLPETIRVLHIRV 98 
                      7********.9..7777789***********99999.....9********************************************99999988 PP

  PseudoU_synth_1  98 vglvlfhvrY 107
                      v    fh+r+
       CCG93183.1  99 VSK-EFHARF 107
                      888.888887 PP

  == domain 2  score: 82.2 bits;  conditional E-value: 3.8e-27
  PseudoU_synth_1   1 AakelvGthdfgsfckqkqek.kntvrtileaaieevsgeekellvvtvkgsgFldhqVRamvgvlfavgqgklspedvkellnakkrkkiave 93 
                      Aa  +vG++df+sf ++     k+t+rt++++ ++     +++l+ +t+k++gFl+++VR++vg+l+++g g+l+ e++k++ ++k+rk  +  
       CCG93183.1 147 AATLFVGKKDFASFVSSPGFVlKDTIRTVFDCGFT----VQGQLCLFTIKANGFLYRMVRNIVGALVKIGLGRLDLEKLKDIFESKNRKL-SPA 235
                      8999**********8777777**************....666799******************************************976.*** PP

  PseudoU_synth_1  94 tapavglvlfhvrYd 108
                      +ap+ gl+l +v+Y+
       CCG93183.1 236 SAPPWGLYLLKVDYP 250
                      **************8 PP

>> DUF2344  Uncharacterized protein conserved in bacteria (DUF2344)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.8e-05      0.25      55     115 ..      57     118 ..      44     159 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.8e-05
     DUF2344  55 vGveSegEyldielteevdpeevverLnaqlpegikileveeieek.akslmallaaaeYrv 115
                  Gv ++g ++ +   +++++e ++++Ln  lpe i++l+++ ++++ +    a+ +  +Y +
  CCG93183.1  57 AGVHAKGQVASFIAPRKLEAEVLQRALNYYLPETIRVLHIRVVSKEfHARFHAISKTYQYWI 118
                 58999999999999999***************************995555566666666766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1969.63
//
Query:       CCG93184.1  [L=227]
Description: Outer membrane protein W [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-15   56.9   0.3    3.2e-15   56.4   0.3    1.3  1  PagL       Lipid A 3-O-deacylase (PagL)
      0.001   19.3   0.1     0.0017   18.5   0.1    1.5  1  OMP_b-brl  Outer membrane protein beta-barrel domain
  ------ inclusion threshold ------
      0.054   13.4   0.1      0.084   12.7   0.1    1.3  1  OmpW       OmpW family


Domain annotation for each model (and alignments):
>> PagL  Lipid A 3-O-deacylase (PagL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.3   5.4e-19   3.2e-15      22     133 ..     102     219 ..      75     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 5.4e-19
                 EEEEEEEEEEEEEE---..EEEEEEEEEEEEEE--SSEE..EEEEEEEEEEEE.SSSEETTEE-SSSEEEEEEEEEEEEETTS....-EEEEEEEEEE- CS
        PagL  22 gglslyweaaaaawlgg..ntglgvspvlrfefasgkrp..lfleaGiGvalldsktkfgdkdlgsrfqFedqlglgyrfgegk..alelglrlqHySN 114
                 g+l+l     a+a ++g  +t +g+ +++r++f +++++  +f+e G+G +++d  t  ++  +g+ ++F+ qlg+g+r+      +++ +l ++H+SN
  CCG93184.1 102 GNLELLVGLYASAIEKGfgSTVIGPQIMVRYNFVQPDSRfiPFIEGGLGFVYNDAYTVKTQSMVGQVIEFTPQLGAGCRYMLDThwSFNFELLFHHMSN 200
                 455555555556666668899999999999998776655338***********96666688999*************998554444************* PP

                 TTSSTT---EEEEEEEEEE CS
        PagL 115 AgikdpNpGlnflglrlgy 133
                 A++++ N G+n lg ++g+
  CCG93184.1 201 ADMASRNIGVNELGGMIGF 219
                 ****************997 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   2.8e-07    0.0017      89     172 ..     128     210 ..      67     212 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.8e-07
   OMP_b-brl  89 vnagyafnlsds.vlpyggaGlgytkvevdvsgng.asdsdtdfglglgaGveyaladnwslkaeYrytdlksdadndlknntfqv 172
                 + ++y+f  +ds + p++ +Glg+++++  + +++       +f  +lgaG +y l  +ws+++e    ++   ++ d+  +++ v
  CCG93184.1 128 IMVRYNFVQPDSrFIPFIEGGLGFVYNDAYTVKTQsMVGQVIEFTPQLGAGCRYMLDTHWSFNFELLFHHM---SNADMASRNIGV 210
                 4578888778889**********77666664444456777889************************9999...456666666655 PP

>> OmpW  OmpW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.4e-05     0.084      83     154 ..     123     193 ..     110     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
                 EE-EEEEEEEE.TSTTSSEEEEE..EEEEEEEECCECCCHHCTCCEEEE-SECEEEEEEEEEEECSSSEEEEEEE CS
        OmpW  83 vlPptltlqYh.geasskvrPYv..GaGvnyttffdeklgstgltdlklkdslgaagqiGvDikvkddwllnldv 154
                 v+ p ++++Y  ++++s + P++  G+G  y   +  k +s     +    ++   + +G  ++++ +w +n++ 
  CCG93184.1 123 VIGPQIMVRYNfVQPDSRFIPFIegGLGFVYNDAYTVKTQSM----VGQVIEFTPQLGAGCRYMLDTHWSFNFEL 193
                 678999****99**********96688866666666555555....555556777778899*********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1594.89
//
Query:       CCG93185.1  [L=146]
Description: putative Holliday junction resolvase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-38  129.6   0.0    1.1e-37  129.4   0.0    1.0  1  RuvX      Holliday junction resolvase


Domain annotation for each model (and alignments):
>> RuvX  Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.4   0.0   6.1e-42   1.1e-37       1     134 [.       1     133 [.       1     134 [. 0.99

  Alignments for each domain:
  == domain 1  score: 129.4 bits;  conditional E-value: 6.1e-42
                 --EEEEEESSSEEEEEEE-S--SS---EEEEE---HHHHHHHHHHHHHHTT--EEEEE------SSS---SSTTHHHHHHHHHT..T-EEEEE--S--- CS
        RuvX   1 grilglDvGtkriGvAvsdplgilaspletierkskekdleelkelvkeeeveeiVvGlPlnldgsegesakkvrkfaeeLakrlkklpvelvDErltt 99 
                 + il+lD+Gtk+iG+A+sd++  +a pl+ ++++   k + +lke++++ ev+ i+vGlP+n+dgs g +a+kv++f+ +L++ + ++p+e+ DErl+t
  CCG93185.1   1 MSILSLDYGTKHIGLAISDETLSIAVPLDPLQAEPFGKFIGKLKETIRQFEVSLIIVGLPRNMDGSYGIAAEKVKQFVFKLRQWI-QIPMEFQDERLST 98 
                 679*******************************999***********************************************9.************* PP

                 -XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        RuvX 100 veaerilresglsrkkrkkvvDklaAviiLqsyLd 134
                 + a+r l+e+g ++k++k+++D++aA+++LqsyLd
  CCG93185.1  99 KLADRLLTERGCHGKEKKRRIDSCAAAVVLQSYLD 133
                 **********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1243.71
//
Query:       CCG93186.1  [L=273]
Description: Tryptophan synthase alpha chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-85  284.4   0.0    6.2e-85  284.2   0.0    1.0  1  Trp_syntA     Tryptophan synthase alpha chain
    8.5e-05   22.1   0.1    0.00085   18.8   0.0    2.3  3  PcrB          PcrB family
    0.00021   20.8   0.0    0.00078   19.0   0.0    1.8  2  His_biosynth  Histidine biosynthesis protein
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.023   14.1   0.0    1.5  1  BtpA          BtpA family


Domain annotation for each model (and alignments):
>> Trp_syntA  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.2   0.0   1.4e-88   6.2e-85       2     254 ..      10     259 ..       9     264 .. 0.95

  Alignments for each domain:
  == domain 1  score: 284.2 bits;  conditional E-value: 1.4e-88
                 HHHHCTTB-EEEEEEETTSS-HHHHHHHHHHHHHCT-SSEEEE---S--TTS-HHHHHHHHCCCCTT--HHHHHHHHHHHHHHCSSS-EEEEE-CHHHC CS
   Trp_syntA   2 aklkaenraafvpyvtagdpdleqsleilkalekagadviElGlpfsdPladGPvIqaanlraLakgvtlekvlelveevrkkevevPivlltylnlvl 100
                  +l++++ +af+p+v+agdp+ e +l++++ le++gad++E+G+pfsdPladGP+Iq+++ raL+ gv +++v+ l++ +r k++++Pivl++yln+++
  CCG93186.1  10 LELQKRGTKAFIPFVMAGDPTPEVFLNVVEILEESGADILEVGIPFSDPLADGPIIQQSAFRALKGGVHIDQVFSLLNIIR-KKSNIPIVLFSYLNPIF 107
                 5788999**************************************************************************.99*************** PP

                 CC-HHHHCHHHHHCTEEEEEETTSBCCCHHHHHHHHHHTT-EEEEEE-TTS-HHHHHHHHHH--S-EEEESTTC-SSTTSSB-TTHHHHHHHHHHCTSS CS
   Trp_syntA 101 sygeerflaelkeagvdglivpDlPleeaeelveaakkkglelvflvapttsderlkevveqaegfvYvvsraGvTgaenavaaevdelverlkkltav 199
                 +yg+erf a++ ++g+dg++++DlP+ee+ e  + +++  l+ + lv+p+ts  r k+++e+++gf Y+vsr+G+Tg ++++++e  elv+ +++l++v
  CCG93186.1 108 RYGIERFAAKAYDNGADGVLIVDLPPEESLEGINSLEE-KLDRILLVTPATSTLRKKRIAERTRGFLYCVSRNGITGLQKELSKEAYELVKSMETLSKV 205
                 ******************************99998875.6*********************************************************** PP

                 -EEEESSS-SHHHHHHHHTT-SEEEE-HHHHHHHHCTTTSHHHHHHHHHHHHHHH CS
   Trp_syntA 200 PvavGFGistkeqvkqvakvadGvivGSalvkkieeeaeekeqalekleelarel 254
                 P+ vGFG+st+ q+k+va+ adGv+vGSalv+++++ + e +++lek++e+a +l
  CCG93186.1 206 PLCVGFGVSTPHQAKTVASYADGVVVGSALVDELARIV-EGKSTLEKFKEFAFSL 259
                 ***********************************655.5556778887776555 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.2   5.3e+03      13      34 ..      28      49 ..      23      52 .. 0.75
   2 ?    0.5   0.0     0.079   3.5e+02      42      65 ..      77     101 ..      60     154 .. 0.71
   3 !   18.8   0.0   1.9e-07   0.00085     170     215 ..     194     239 ..     182     252 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.2
                -TTSS-CHHHHHHHHCTT-SEE CS
        PcrB 13 DPeeenpdEiveiviesgtDav 34
                DP  e   ++vei+ esg+D +
  CCG93186.1 28 DPTPEVFLNVVEILEESGADIL 49
                7777777788999999999865 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.079
                 HHHHHHHHHHHHHC.TSSS-EEEEE CS
        PcrB  42 vtldntvrllkkvs.riklPivlep 65 
                 v+ d++  ll+ ++ + ++Pivl+ 
  CCG93186.1  77 VHIDQVFSLLNIIRkKSNIPIVLFS 101
                 5666666666666413789999985 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 1.9e-07
                 HHHHHHHHHSSSEEEEESS--SHHHHHHHHCCSSEEEE-CHHHHHH CS
        PcrB 170 evialkkklekarlivGGGirsaEkAkevveaADvivvGnvveekd 215
                 e+++    l+k  l vG G+  + +Ak v+ +AD +vvG ++ ++ 
  CCG93186.1 194 ELVKSMETLSKVPLCVGFGVSTPHQAKTVASYADGVVVGSALVDEL 239
                 3445566799999**************************9987765 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.28   1.3e+03      35      51 ..     116     131 ..     111     150 .. 0.75
   2 !   19.0   0.0   1.7e-07   0.00078      56     114 ..     187     244 ..     180     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.28
                   HHHHHHHT-SEEEEEEH CS
  His_biosynth  35 akryeeegadelhvvDl 51 
                   ak+y ++gad + +vDl
    CCG93186.1 116 AKAY-DNGADGVLIVDL 131
                   4445.899999999999 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.7e-07
                   TTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THHHHH CS
  His_biosynth  56 egreanldlveeiaeevfipvqvGGGIrsledveelleagadkviigtaavknpelike 114
                   e +++ ++lv+ +    ++p++vG G+++  +++++ +  ad v++g+a v++   i e
    CCG93186.1 187 ELSKEAYELVKSMETLSKVPLCVGFGVSTPHQAKTVASY-ADGVVVGSALVDELARIVE 244
                   456778899999999999*************99999988.***********99988765 PP

>> BtpA  BtpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.1e-06     0.023     179     230 ..     182     235 ..     156     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.1e-06
        BtpA 179 sGkatGgevdleelklaketvk.vkvlvgsGvse.enlekllsiadGvivgtsi 230
                 +G++   + ++ el++  et++ v+  vg Gvs+ + ++ + s+adGv+vg+ +
  CCG93186.1 182 TGLQKELSKEAYELVKSMETLSkVPLCVGFGVSTpHQAKTVASYADGVVVGSAL 235
                 56666666677788888888888*********98345677889********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1955.31
//
Query:       CCG93187.1  [L=61]
Description: hypothetical protein MFUM_940062 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 421.99
//
Query:       CCG93188.1  [L=1519]
Description: Glutamate synthase domain large chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.8e-161  535.3   0.0   1.6e-160  534.4   0.0    1.4  2  GATase_2         Glutamine amidotransferases class-II
     3e-149  497.1   0.1   2.2e-148  494.3   0.1    2.0  2  Glu_synthase     Conserved region in glutamate synthase
     2e-104  349.0   0.0   5.5e-104  347.6   0.0    1.7  2  Glu_syn_central  Glutamate synthase central domain
    2.2e-79  265.5   5.6    3.5e-79  264.8   5.6    1.3  1  GXGXG            GXGXG motif
     0.0043   16.1   1.7     0.0096   15.0   1.2    1.7  2  FMN_dh           FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> GATase_2  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  534.4   0.0  4.5e-164  1.6e-160       1     419 [.      25     446 ..      25     447 .. 0.97
   2 ?   -3.6   0.0      0.91   3.3e+03      78     126 ..    1464    1509 ..    1454    1512 .. 0.73

  Alignments for each domain:
  == domain 1  score: 534.4 bits;  conditional E-value: 4.5e-164
                 -EEEEEE-SSS--BSHHHHHHHHHHHHGGGGS-B-TTSSSBSEEEEEEE--HHHHHHHHHHTT-----GGG-EEEEEEE-SSHH.HHHHHHHHHHHHHH CS
    GATase_2   1 CGvgfiaelkgkkshkivekalealenleHRGavgadektGDGaGillqiPdeflrkeakekgielpeageyavgmlflpkdee.kaeeakkileeive 98 
                 CGvgf+a+++g+++ +i++ al+ ++ l HRGa+ ad ktGDGaG++++iP ++lr e++++g +l +++++avg +flp ++  ++ ++kki+ee+v 
  CCG93188.1  25 CGVGFVADIHGNSTYHILDAALQCVCALSHRGAIDADMKTGDGAGVMTKIPYDLLRPEIEKSGHHLFKNEDLAVGFCFLPAKDLyAQVHCKKIIEETVL 123
                 *******************************************************************************98765156689********* PP

                 HTT-EEEEEEE--B-GGGS-HHHHHH--EEEEEEEE-TT-..--HHHHHHHHHHHHHHHGGG.....-BTTBEEEEEESSEEEEEESS-GGGHHHHBHG CS
    GATase_2  99 eeglevlgwRevpvdksvlgeaakesePsieqvfvekked..lseeelerklyviRkriekeiakkkaekefYicslssrtivYkglltseqlkefykd 195
                 e+gl +lgwR vp++ ++lg++a+++ P+ieq++++k+ d  l++ ++e+ l+++Rk+ie++ia k++ k+fYi+s+ss+tivYkgl+ s ql++fy+d
  CCG93188.1 124 EHGLYILGWRLVPIHMDALGDKAQRTCPHIEQILLAKPLDrsLDSLAFEQLLFLCRKKIENKIA-KQNIKDFYIPSFSSKTIVYKGLFVSPQLQKFYAD 221
                 ************************************99887789999***************98.56889***************************** PP

                 GGSTT--BSEEEEEE---SSSS--GGGSSS-SSEEEEE--TTHHHHHHHHHHHCTT--.BT-HH.HHHTC--S--TTS-HHHHHHHHHHHHHHTT--HH CS
    GATase_2 196 lkdeelesalalvHsRfstntfPsWelaqPlRllaHnGEintlrGnknwmkareaelk.sellgdelekllPivneegsDsasldnvlellvlsgrsla 293
                 l+d+ +++ +a++H+R+stntfPsW l+qP+R+laHnGEint++Gn+ w+kare+ l+ +e +g+e+e+llPi+  + sDsasld+v+e+l+lsgr+  
  CCG93188.1 222 LHDPLFKTPFAIYHQRYSTNTFPSWFLSQPFRMLAHNGEINTIQGNRLWTKAREKALEmCEPWGNEIENLLPIIPPGTSDSASLDHVFEFLTLSGRDTL 320
                 *********************************************************84589************************************* PP

                 HHHHHHS----TT-GGGTHHHHHHHHHHTTT-----SSEEEEEE-SSEEEEEE-TT--S--EEEEETT--EEEESSTTSS---GGGEEEEEE--TT-EE CS
    GATase_2 294 ealmlliPeawennksldkekkafyeyasalmepWDGPalivftdGkvvgavLDRnGLRPaRylvtkddlvvlasEvGvldleeeevvekgrlqPGrml 392
                 ea+++l+P aw+++k++ +e+k+fy y+ +  epWDGPa++vf+dGk+vga+LDRnGLRP+R+ +t+d+l++l+sE+G+ +++e++v+ekgrl+PG+++
  CCG93188.1 321 EAILMLVPAAWQAEKHIPEELKNFYLYHELFSEPWDGPAALVFSDGKIVGACLDRNGLRPSRFRITSDGLFILGSEAGIGKIDEKTVIEKGRLGPGEII 419
                 *************************************************************************************************** PP

                 EEETTTTEEEEHHHHHHHHHTTS-HHH CS
    GATase_2 393 lvdleegriledeeikkkiaskkpyke 419
                 ++dle +++l+d+eik++++sk+py +
  CCG93188.1 420 AIDLEAKKVLRDKEIKEQVSSKYPYIQ 446
                 *************************76 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.91
                  EE-SSHHHHHHHHHHHHHHHHHTT-EEEEEEE--B-GGGS-HHHHHH-- CS
    GATase_2   78 flpkdeekaeeakkileeiveeeglevlgwRevpvdksvlgeaakeseP 126 
                  +++ +++ +++ak+ile+     + + l w+ vp+++   g+  + ++P
  CCG93188.1 1464 YFHFEKTGSTKAKHILENWR---KAKALFWKVVPLESAHTGKPKTVEKP 1509
                  55555566666666666654...456789********999998877777 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.085     3e+02     249     289 ..     641     682 ..     637     694 .. 0.74
   2 !  494.3   0.1  6.3e-152  2.2e-148      22     367 ..     839    1187 ..     821    1188 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.085
                   HHB---HHHHHHHHHHHHHHTT-GGG-EEEEE.SS--SHHHH CS
  Glu_synthase 249 khaGlPlelalaevdqtlkeeglrdrvsliad.Gglktgadv 289
                   + a lP++l + +v++ l++ g r ++s+i + G+ +  +  
    CCG93188.1 641 ELAPLPMLLVVGAVHHHLIRVGKRTKLSIICEtGECRDVHHF 682
                   56779***********************98752555555554 PP

  == domain 2  score: 494.3 bits;  conditional E-value: 6.3e-152
                    HHHHHHHHHHTS...-S-SGGGGEEE--SS--.--GGGS--HHHHHTTEE---B-TTTS-HHHHHHHHHHHHHHT-B-EETTS---GGGGS---- CS
  Glu_synthase   22 sidkyrekleere..vlkakrdlleldaaeealikleevepalkikkriltsamSyGalseeahealakamnrlgtksntGEGGedeerlktakd 114 
                    +i++yr+  +        + rd l +  ++++ i+leeve++++i+kr++t+amSyGals eahe+l++amnr+g+ksntGEGGed+er+++  +
    CCG93188.1  839 QIEEYRKFSNLILssGPISIRDCLTF-RQQTP-IPLEEVEQIEEIRKRFTTAAMSYGALSPEAHETLSIAMNRIGGKSNTGEGGEDPERYSPLPN 931 
                    44555554444330033467899999.45556.79*******************************************************99888 PP

                    -.....SEEEE-TT-TT--HHHHHH-SEEEEE---TTSTTS--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTS CS
  Glu_synthase  115 v.....aikQvasgrFGvteeyLnnakaleikiaQGakpgeGgqlpgeKvseeiakiRkikpgvdliSPaphhdiysiedlaqliedLkevnkea 204 
                          +ikQ+asgrFGvt+eyL+na+++eik+aQG+kpgeGgq+pg K+ e ia++R+++pgv liSP+phhdiysiedl+qli+dLk++n++a
    CCG93188.1  932 GdsknsLIKQIASGRFGVTAEYLSNAAEIEIKMAQGSKPGEGGQIPGFKIDEVIARLRRSTPGVPLISPPPHHDIYSIEDLSQLIYDLKQANPRA 1026
                    777888***************************************************************************************** PP

                    EEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEEHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SE CS
  Glu_synthase  205 kvsvKlvaeagvetiaagvakanadiilidGleGGTGAspkssikhaGlPlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalGAda 299 
                    k+ vKlv+eagv+tiaagvaka+adiili+G+eGGTGAsp ssik+aG+P+el++ae++q+l+ +glr+rv+l++dGgl+tg+d+v+a++lGA++
    CCG93188.1 1027 KICVKLVSEAGVGTIAAGVAKAHADIILISGNEGGTGASPISSIKYAGTPWELGVAETQQVLMLNGLRSRVTLRTDGGLRTGRDIVIAAILGAEE 1121
                    *********************************************************************************************** PP

                    EE-SHHHHHHTT--S---GGGT--TTSSS---HHHH..TT----HHHHHHHHHHHHHHHHHHHHHHT- CS
  Glu_synthase  300 vgigtaalialgCimarvChtntCpvGvatqdpeLrkrlkveekaervvnyikalaeevrellaalgi 367 
                    +++gt+alia+gC+++r Ch+ntCp+G+atqdp+Lr  +++++++e ++ y+ a+a+evre+la+lg 
    CCG93188.1 1122 FNFGTMALIAMGCVYVRHCHLNTCPTGIATQDPKLR--ARFKGTPEGIIAYLNAVAQEVREILASLGA 1187
                    ************************************..***************************997 PP

>> Glu_syn_central  Glutamate synthase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.6   0.0  1.5e-107  5.5e-104       3     278 ..     476     757 ..     474     758 .. 0.96
   2 ?   -2.2   0.0      0.65   2.3e+03     170     214 ..    1076    1119 ..    1040    1187 .. 0.71

  Alignments for each domain:
  == domain 1  score: 347.6 bits;  conditional E-value: 1.5e-107
                      HHHTT--HHHHHHTHHHHHHHSS--EE-S---S--TTT-SS---GGGGEEE----SSS----TTTTGGG-B--EEES----SSS--GGGG-EEE CS
  Glu_syn_central   3 qkafgyteedlelllepmakegkeaigsmGdDtplavLsekprllydYFkqlfAqVTNPpiDpiREelvmsletllGkegnlleeeeeqakrlk 96 
                      +  fgy+ee+++ +l+pma++++ea+gsmGdD+p+a+Ls+kp+ ly YF+qlfAqVTNPpiDpiRE+lvmsle   G+ +++l + + + + ++
       CCG93188.1 476 LLCFGYDEEEIQYVLKPMAQKAEEAVGSMGDDAPIAILSDKPKILYWYFRQLFAQVTNPPIDPIREKLVMSLENWCGRLPQWLLTGPIDHEVIR 569
                      568******************************************************************************************* PP

                      ESSSB--HHHHHHH....HHSSS-EEEEESEE.......SHHHHHHHHHHHHHHHHHTT-SEEEEESS--STTEEE--HHHHHHHHHHHHHHTT CS
  Glu_syn_central  97 lesPiLteeeleklkklkekkefkaktlditfeae....aleealerlceeaeeavregaeilvLsDrkvseervpipslLavgavhhhLvrkg 186
                      l sP L +eele+l++   +++++a+t++++f+ +    a+ ++l ++  eaeea++eg+ il+LsD++ s+e +p+p+lL+vgavhhhL+r g
       CCG93188.1 570 LCSPFLFNEELEELRSR-PEPSLQARTIQCLFPIDgseeAFLSRLWEIKMEAEEAADEGIAILILSDKGPSKELAPLPMLLVVGAVHHHLIRVG 662
                      **************776.6789**********9886554599999************************************************* PP

                      -GGG-EEEEEESS--SHHHHHHHHHTT-SEEEEHHHHHHHHHHHTTTS-...----HHHHHHHHHHHHHHHHHHHTT--BHHHHHHS--EEESS CS
  Glu_syn_central 187 lrtkvslvvesgearevhhfavllgyGadavnPylaletieklveegal...aeeeleknyrkavekGllKimskmGistlqSYkgaqifeavG 277
                      +rtk+s+++e+ge+r+vhhfa+l+gyGa+avnPyl+le +++l+++ga+   ++ee++kny++a+ekGllKimskmGist++SY+g+q+fea+G
       CCG93188.1 663 KRTKLSIICETGECRDVHHFACLIGYGATAVNPYLCLELFSNLHQNGAFgnlTREEIAKNYKSAIEKGLLKIMSKMGISTIASYHGSQLFEALG 756
                      ***********************************************77766899999************************************ PP

                      B CS
  Glu_syn_central 278 l 278
                      +
       CCG93188.1 757 I 757
                      8 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.65
                       -HHHHHHHHHHHHHHTT-GGG-EEEEEESS--SHHHHHHHHHTT- CS
  Glu_syn_central  170 pslLavgavhhhLvrkglrtkvslvvesgearevhhfavllgyGa 214 
                       p  L v+  ++ L+ +glr++v l  + g +r+  ++++   +Ga
       CCG93188.1 1076 PWELGVAETQQVLMLNGLRSRVTLRTDGG-LRTGRDIVIAAILGA 1119
                       44578888999999999999998876654.555555555555555 PP

>> GXGXG  GXGXG motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.8   5.6   9.8e-83   3.5e-79       2     189 ..    1269    1456 ..    1268    1457 .. 0.98

  Alignments for each domain:
  == domain 1  score: 264.8 bits;  conditional E-value: 9.8e-83
                  EE-TT--STTHHHHHHHHHHHTTT---.-EEEEEEEEEE-TTTTTT--TTEEEEEEEEE-STTTTT-ESSEEEEE--TT-SS-GGGSB-S-SSTTTT CS
       GXGXG    2 eirnldrsvgtilsneiakrygeeglpedtikiklkGsaGqslgaflakGltleleGdandyvGkglsgGkivikpskeskfkaeeniivGnvvlyg 98  
                  +++n++rs+gt ls++ia  yg++glpe+ti+++l+G aGqslgafl++G++++leG+andyvGkg+sgG+iv+k+++ + fk+een+i+Gn+vlyg
  CCG93188.1 1269 KVKNVNRSIGTQLSGTIAYLYGDNGLPEGTIQLNLSGCAGQSLGAFLVNGVNIRLEGEANDYVGKGMSGGEIVLKAPDYALFKPEENVICGNTVLYG 1365
                  689********************************************************************************************** PP

                  --SEEEEESSB--SSTTTT-SS-EEEESEB-SSTTTT-EEEEEEE-S-B-SSBTTT--EEEEEEE-SSSTHHHHB-TTT-EEEES-SHHHH CS
       GXGXG   99 atgGklfirgkageRfavrnsgatavvegvgdhgceYmtGGvvvvLgktgrnfaaGmsgGiayvldedekfekklnkelvelekvedeeee 189 
                  atgG+ +  gkageRfavrnsgatav+eg+gdhgceYmt G+vvvLgktg+nfaaGmsgGiayv+ded++f +++n ++v+le+  +e+e+
  CCG93188.1 1366 ATGGRFYGCGKAGERFAVRNSGATAVIEGIGDHGCEYMTRGKVVVLGKTGKNFAAGMSGGIAYVYDEDGSFPDNCNLQMVRLERFPEEDEA 1456
                  ************************************************************************************9888875 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.2   2.7e-06    0.0096     267     307 ..    1092    1132 ..    1025    1139 .. 0.72
   2 ?   -2.5   0.0      0.54   1.9e+03     313     341 ..    1165    1193 ..    1160    1197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.7e-06
                  HH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHH CS
      FMN_dh  267 avggrievlvDgGirrGsDvlkAlalGAdavllGRpflygl 307 
                   +++r+++  DgG r+G D++ A  lGA+   +G  +l ++
  CCG93188.1 1092 GLRSRVTLRTDGGLRTGRDIVIAAILGAEEFNFGTMALIAM 1132
                  346799***********************999998887775 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.54
                  HHHHHHHHHHHHHHHHHHHHHT-SBHHHH CS
      FMN_dh  313 eGvervleilraelertmallGvksvael 341 
                  eG+  +l+ + +e+++ +a lG++s++e+
  CCG93188.1 1165 EGIIAYLNAVAQEVREILASLGARSLNEV 1193
                  78889999*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.47
# Mc/sec: 9783.59
//
Query:       CCG93189.1  [L=118]
Description: LysM domain containing protein (fragment) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-18   66.8   0.0    1.8e-18   66.3   0.0    1.2  1  LysM       LysM domain
  ------ inclusion threshold ------
      0.094   12.0   0.0       0.12   11.7   0.0    1.1  1  IKBKB_SDD  IQBAL scaffold dimerization domain
       0.18   11.5   0.3        1.1    8.9   0.3    1.9  1  DUF4131    Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0     3e-22   1.8e-18       1      44 []      40      82 ..      40      82 .. 0.99

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 3e-22
                EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM  1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLkiP 44
                Y+VkkGD+Lw+I+++y++tve+l++ N+l++++ ++pGq+L+iP
  CCG93189.1 40 YVVKKGDSLWKISRKYKVTVEALMAINELKDDR-LKPGQELIIP 82
                9********************************.*********9 PP

>> IKBKB_SDD  IQBAL scaffold dimerization domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.9e-05      0.12      14      63 ..      30      77 ..      20      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
   IKBKB_SDD 14 aarslpesvnfivrdpktqlayselrkvwgqavhyirelkedysrllqgq 63
                ++ ++p +++++v+      ++s+  kv  +a+  i+elk+d  rl  gq
  CCG93189.1 30 SSTKKPTEIKYVVKKGDSLWKISRKYKVTVEALMAINELKDD--RLKPGQ 77
                46789***********************************99..577777 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.3   0.00018       1.1      98     138 ..      45      91 ..       1      93 [. 0.69

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00018
     DUF4131  98 agktkpvsgrvlvtvpkspae......glrpGdrlrltgrlkrprpa 138
                 ++   ++s +  vtv++  a       +l+pG++l +  + +rp+p+
  CCG93189.1  45 GDSLWKISRKYKVTVEALMAInelkddRLKPGQELIIPPKGYRPPPP 91 
                 44444566666777777766677777788999999998888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 952.20
//
Query:       CCG93190.1  [L=307]
Description: SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-15   55.2   0.1    1.4e-14   54.5   0.1    1.3  1  Methyltransf_21  Methyltransferase FkbM domain
    5.1e-05   23.1   0.0    7.7e-05   22.5   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0014   18.4   0.1     0.0024   17.7   0.1    1.3  1  Methyltransf_31  Methyltransferase domain
     0.0021   18.7   0.0     0.0039   17.9   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.047   13.6   0.0      0.082   12.8   0.0    1.4  1  DUF1748          Fungal protein of unknown function (DUF1748)
      0.077   12.7   0.0        0.1   12.3   0.0    1.2  1  Met_10           Met-10+ like-protein
       0.12   13.0   0.0       0.23   12.1   0.0    1.4  1  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.1   5.3e-18   1.4e-14       1     172 [.     106     263 ..     106     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 5.3e-18
  Methyltransf_21   1 dvGanigvwdsfanltarlcggggevlaiEPvpnslpkfeklranlltlavgndvglyelivegksg..gkyfpfavgdtngfstssvlggeda 92 
                      d+Gan g   + ++++ +l g +g+v+aiEP        + l++n       n+++++e+++ ++++  gk f    g +++         +  
       CCG93190.1 106 DCGANQG--LYSIYMA-KLVGEKGKVVAIEPCER---FIQFLNRN----KNENKFYCIEVHQIAAANkeGKTFFLEKGPYSRLDPKN----TGH 185
                      9******..7777776.89************999...66666666....44578899888888887785445555555555555554....688 PP

  Methyltransf_21  93 ryievpvvtldsfleeikksrid..llkiDvEGaElevLeGaqkglkrcqpnlivvEvhkfkefetelfdeirqflrecgyr 172
                      + + v+v+ l ++l+++    i+  + kiDvEGaEl vL+G +k lk+  p  i++E++    + + +  ++ +fl  +gy 
       CCG93190.1 186 DSKAVEVRCLEDLLDDR----IHyvFGKIDVEGAELFVLQGLTKMLKNANPPAIQIEITNLTKDYGYSAYDLKEFLLTFGYH 263
                      99***********8888....553389*******************************998855557899999999999996 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     3e-08   7.7e-05      66     145 ..      91     177 ..      83     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3e-08
                 HHHTT..--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.....SEEEEES-GGGTTGGG-SEEE CS
        PCMT  66 lelle..lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.....nvivvvgDGrkGyeekaPYda 145
                 +++l+  l++g+ v + G+  G  +  +a+lvgekg+vv+ie  +++++  +rn ++++       +++    +G++ + ek PY +
  CCG93190.1  91 MKFLSryLREGDYVFDCGANQGLYSIYMAKLVGEKGKVVAIEPCERFIQFLNRNKNENKFYcievhQIAAANKEGKTFFLEKGPYSR 177
                 567777899**********************************99999888777776665556555777888889999999999976 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   9.3e-07    0.0024       3      63 ..     100     160 ..      98     172 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 9.3e-07
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdi 63 
                      +g +v D+G+++G +++ +a+++g+k++vv i+  e+ i++ + n  ++++  +e++q  +
       CCG93190.1 100 EGDYVFDCGANQGLYSIYMAKLVGEKGKVVAIEPCERFIQFLNRNKNENKFYCIEVHQIAA 160
                      67899**********************************************9999998555 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.5e-06    0.0039       1      55 [.     104     160 ..     104     170 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.5e-06
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBC CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl.nvefvqgda 55 
                      v d+G+ +G +++++ak +g k+kv+++++ e++++  +++ +e+++  +e++q  a
       CCG93190.1 104 VFDCGANQGLYSIYMAKLVGeKGKVVAIEPCERFIQFLNRNKNENKFyCIEVHQIAA 160
                      78*****************779*******************9998887777777555 PP

>> DUF1748  Fungal protein of unknown function (DUF1748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.2e-05     0.082      24      59 ..      75     110 ..      67     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.2e-05
     DUF1748  24 ttgltlnsdkitdkdikkwvdkYLgvGEwvmDqsva 59 
                   +l+++ + itd+   k++++YL+ G++v+D  ++
  CCG93190.1  75 FIPLSFSFSGITDYREMKFLSRYLREGDYVFDCGAN 110
                 57999********99999**************8766 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     4e-05       0.1      90     150 ..      90     151 ..      81     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4e-05
                 HHHHHHTT--TT-EEEETT-TTTCCHHHCCHH.TTSSEEEEEES-HHHHHHHHHHHHHTT-T CS
      Met_10  90 ErerlaklveegevVvdvfAGiGpfaipiaky.skakrvlaidlnPesvkylkeniklNkve 150
                 E + l +  +eg+ V d  A  G ++i +ak+ +++ +v+ai+   + +++l++n + Nk  
  CCG93190.1  90 EMKFLSRYLREGDYVFDCGANQGLYSIYMAKLvGEKGKVVAIEPCERFIQFLNRNKNENKFY 151
                 6667788899********************97478889********************9964 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     9e-05      0.23       2      53 ..     106     156 ..     105     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9e-05
                      EET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECC CS
  Methyltransf_11   2 dvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl.kvefvvadae 53 
                      d+G+ +G+++ ++ak +   ++vv++++++++++  +++++e+++        +++
       CCG93190.1 106 DCGANQGLYSIYMAKLVgekGKVVAIEPCERFIQFLNRNKNENKFyC-----IEVH 156
                      89999*********8878999******************99998642.....3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2411.62
//
Query:       CCG93191.1  [L=300]
Description: Dihydropteroate synthase or related enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-28   99.6   0.0    2.9e-28   99.2   0.0    1.2  1  Pterin_bind  Pterin binding enzyme


Domain annotation for each model (and alignments):
>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   1.6e-32   2.9e-28       1     175 [.      41     211 ..      41     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 1.6e-32
                  EEEEETTTTTCHCCHHCTHHHHHHHHHHHHHHTT-SEEEEESS-TSTT--CCHHHHHHHHHHHHHHHHHHHCTSEEEEE-S-HHHHHHHHHTTSEEEE CS
  Pterin_bind   1 mgilNvtpdsfsdggkfedldkalaqarkmveeGAdilDiggestrPgaervdeeeelervvpvlealrdeadvpisiDttkaevaeaAlkagadivN 98 
                  mg++N++ +s ++++  +d  +a+ +a+ + ++GAdi+Dig+es+ + a+r+d  + le ++p++++l+ + +++is+ t++ +va+ + kaga+i+N
   CCG93191.1  41 MGVINLSSESWYRESVALDSISAVRKAKILQASGADIVDIGAESSLSYAQRIDDIQQLELLLPIIKELSTT-GILISVETYHLNVAKGCFKAGAAILN 137
                  9*****************************************************************99998.9************************* PP

                  ETTTTSSSTTHHHHHHHHT-EEEEESECSSTTTH.CCCCCCCSSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTS CS
  Pterin_bind  99 dvsgeerdpkmlelvaeagaavvvmhmrgtpktm.qeeegqyedvveeveaflearveaaeeaGvaperillDpgigf 175
                   ++g +  ++++++va+++  v+++++rg+  ++ q      +d    +  ++e+r+e+a + Gv++  i+lDpg+gf
   CCG93191.1 138 LTKGDN-LKEFFKVVADYDGGVIINFVRGDNVREvQPI-ELPKDPLSLLFPYFEKRIEEALSCGVRK--IWLDPGLGF 211
                  ****99.9********************7665430444.4899**********************88..********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2029.80
//
Query:       CCG93192.1  [L=203]
Description: Imidazoleglycerol-phosphate dehydratase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-55  188.0   0.1    1.3e-55  187.7   0.1    1.1  1  IGPD      Imidazoleglycerol-phosphate dehydratase


Domain annotation for each model (and alignments):
>> IGPD  Imidazoleglycerol-phosphate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.7   0.1   7.2e-60   1.3e-55       1     144 []      34     181 ..      34     181 .. 0.96

  Alignments for each domain:
  == domain 1  score: 187.7 bits;  conditional E-value: 7.2e-60
                 ....HHHHHHHHHHHHHT--EEEEEEESSH...HHHHHHHHHHHHHHHHHHS..-SSB--EEEEEEEETTEEEEEEEE--SS-EEE--......-SB-- CS
        IGPD   1 TgigfldhmLdqlakhggfdlkvkvkgdlevddHhtvedvgialGqalkealgdkrgikRfgsallpmDealaevaldlsgrpylvleae....lkrek 95 
                 Tgigf+dhmL+ +a h++fdl +++kgdl vd Hhtved+gi+lG+al++ lgdk+gi+R+g +llpmDe+l++ a+d+sgrpyl ++      l   +
  CCG93192.1  34 TGIGFFDHMLELFAYHASFDLILECKGDLGVDFHHTVEDCGIVLGEALNKSLGDKKGIARYGYCLLPMDETLVHSAIDISGRPYLCFRSPdhlpLVFLS 132
                 9*************************************************************************************9854455555778 PP

                 TT.--HHHHHHHHHHHHHHHT-EEEEEEEE--BHHHHHHHHHHHHHHHH CS
        IGPD  96 igeldtelveeffeslaeaagitlhvkvlrgenahhivealfKafaraL 144
                  g+++++l+eef+++++++a+++lh+++l+++++hh +e +fKa+araL
  CCG93192.1 133 AGNFQAQLLEEFLRAFVTHARLCLHIHILESKETHHLIEGTFKALARAL 181
                 9***********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1482.95
//
Query:       CCG93193.1  [L=40]
Description: hypothetical protein MFUM_940068 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 323.14
//
Query:       CCG93194.1  [L=207]
Description: hypothetical protein MFUM_940069 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1608.39
//
Query:       CCG93195.1  [L=167]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1204.68
//
Query:       CCG93196.1  [L=385]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-58  196.8   3.7    3.9e-58  196.8   3.7    2.1  2  VIT1             VIT family
    7.9e-08   32.8  15.9    7.1e-07   29.7   8.5    2.4  3  Rubrerythrin     Rubrerythrin
     0.0092   16.2   0.1       0.11   12.7   0.0    2.3  2  Ferritin_2       Ferritin-like domain
  ------ inclusion threshold ------
      0.015   14.3   1.7        2.7    6.9   0.1    2.5  3  Mn_catalase      Manganese containing catalase
       0.13   12.0   5.1        2.2    8.0   0.1    3.3  3  COQ7             Ubiquinone biosynthesis protein COQ7
        6.8    7.0  17.0        3.9    7.8   0.3    3.0  3  Muted            Organelle biogenesis, Muted-like protein
          7    6.4  14.3        1.1    9.1   0.1    3.1  3  DUF2247          Uncharacterized protein conserved in bacteri


Domain annotation for each model (and alignments):
>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   1.6      0.63   1.6e+03      84      84 ..      58      58 ..       2     158 .. 0.56
   2 !  196.8   3.7   1.5e-61   3.9e-58       2     214 ..     169     378 ..     168     379 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.63
        VIT1 84 e 84
                +
  CCG93196.1 58 Q 58
                1 PP

  == domain 2  score: 196.8 bits;  conditional E-value: 1.5e-61
        VIT1   2 rdavlGanDGLvspfalvaGlsaaslgssktvllaGlaellAGaiSMgiGeYlsvkserdlekaerkreeeeleedpeegeaeelaeilearglseela 100
                  d ++G+nDGL  +f++v G+++a+ ++++ +l++Gla+++A ++SMg+G+Yl++ks++++++ae +re++e+ee+p ++e ee+a  ++ +g++ee++
  CCG93196.1 169 TDSIYGINDGLGAVFGIVSGVAGATENQTHYILISGLAGMIASSLSMGAGAYLAAKSQKEVYEAEIAREKREIEENP-QEEIEEMALFYQLQGFNEEES 266
                 589**************************************************************************.67779**************** PP

        VIT1 101 qevaaellknpdallelmlreelgpsaseel.asplkaAlssalsfliGgliPllpylfvesvglalvvsiavtllalllfGavkalltgssklvsalr 198
                 + +a++l ++p+++l++m+  elg+s+  ++ ++p++a ls a+s ++G++iPl+p++f++ +  a+ +s+ ++l+a +l+Ga k+l+t +++++s+l+
  CCG93196.1 267 KWIAEKLYQKPEHFLSAMVSSELGLSQ--ATfPKPWNACLSAAISTVLGAFIPLVPFFFLS-GMYAISFSFFISLVAHFLVGAAKTLVTARNWFFSGLE 362
                 ************************995..44599***************************.9************************************ PP

        VIT1 199 mlliGalAaaaaylig 214
                 m+++G++ a+++y +g
  CCG93196.1 363 MTVVGVIEAVVTYSLG 378
                 *************987 PP

>> Rubrerythrin  Rubrerythrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   8.5   2.8e-10   7.1e-07       2     136 ..      11     140 ..      10     141 .. 0.87
   2 !   15.5   0.7   6.9e-06     0.018       9      57 ..      98     145 ..      91     160 .. 0.89
   3 ?   -1.8   0.8       1.5   3.9e+03      89     112 ..     230     250 ..     214     275 .. 0.55

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.8e-10
                   HHHHHHHHHHHHHHHHHHHHHCHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHH.B.SSBBS-------TTGGHHHHHH.HHHHHHHHHHH CS
  Rubrerythrin   2 iLekAiagEssarrlYkelaekakegypqiaelFeelAeeEreHakilnklleklepelelevkekvreyaeakpkflttaknLe.eaiegayaeee 97 
                   iL  +  +E +  r Y+ +ae  k  +p+ +e++++lAe E++Ha + ++ l+ l ++ e    e   ++    +k+l  +  +   +++ + ae +
    CCG93196.1  11 ILHQNWLNEKKTARAYRDIAEIEK--NPHKKEILLKLAETEEKHALKWEQELKTLGQSCE----ETDSKFKRIIEKWLNQNLGIWnVVRRMENAEAK 101
                   677778889999999999999988..**********************************....556666666778877777665456889999999 PP

                   CHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH CS
  Rubrerythrin  98 emyrfyeelaekegneeakklfkklaeaEkkHeerlrkl 136
                   +  r +++   + g ++ ++++++la++Ek+H  +l +l
    CCG93196.1 102 DELRYLKQKELFKGSAKLEQTLAELAKDEKDHVSILHNL 140
                   999*****************************9999877 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 6.9e-06
                   HHHHHHHHHHHHHHCHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHCS CS
  Rubrerythrin   9 gEssarrlYkelaekakegypqiaelFeelAeeEreHakilnkllekle 57 
                   +E +++ +Y    e +k g  ++++++ elA++E++H  il +l++k  
    CCG93196.1  98 AEAKDELRYLKQKELFK-GSAKLEQTLAELAKDEKDHVSILHNLIKKSP 145
                   69999***********9.**************************99854 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.5
                   HHHHHHHHHCHHHHHHHHHHHTTS CS
  Rubrerythrin  89 iegayaeeeemyrfyeelaekegn 112
                   +e ++a+e+   r+ ee++++e +
    CCG93196.1 230 YEAEIAREK---REIEENPQEEIE 250
                   333333333...223333333332 PP

>> Ferritin_2  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.17   4.5e+02      95     127 ..      21      53 ..       9      77 .. 0.58
   2 !   12.7   0.0   4.2e-05      0.11      37      74 ..     117     153 ..      84     235 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.17
  Ferritin_2  95 vgvsAYlgaapllsnkelltaaasIlsvEArHa 127
                   ++AY   a+  +n+  ++  ++++ +E +Ha
  CCG93196.1  21 KTARAYRDIAEIEKNPHKKEILLKLAETEEKHA 53 
                 444455555554455555555555555555444 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4.2e-05
  Ferritin_2  37 aevrevaeeiakheeaHveflkaaleGaaavakptfdf 74 
                 a+  + + e+ak+e++Hv++l + ++ +++ ++ ++d 
  CCG93196.1 117 AKLEQTLAELAKDEKDHVSILHNLIK-KSPAPENKIDT 153
                 45578999*****************5.88888888886 PP

>> Mn_catalase  Manganese containing catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0011       2.7     139     196 ..       8      65 ..       4      84 .. 0.87
   2 ?    6.2   0.0    0.0017       4.3      40      79 ..     104     143 ..      96     154 .. 0.92
   3 ?   -3.4   0.1       1.5   3.8e+03     106     124 ..     194     213 ..     188     226 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0011
  Mn_catalase 139 liaDlranlaaEakarlqverlyeltddpgvrdmlsfLlaRelvHqlafekAleelee 196
                  l+  l +n   E+k+   +  + e+  +p  ++ l  L + e  H l++e+ l+ l +
   CCG93196.1   8 LVKILHQNWLNEKKTARAYRDIAEIEKNPHKKEILLKLAETEEKHALKWEQELKTLGQ 65 
                  556688999999999999*********************************9999865 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0017
  Mn_catalase  40 lrYlfQgfnirdkekykdLlmdiatEElgHvEliatmiar 79 
                  lrYl Q+  +++ +k+ + l+++a +E  Hv ++ ++i++
   CCG93196.1 104 LRYLKQKELFKGSAKLEQTLAELAKDEKDHVSILHNLIKK 143
                  79*********************************99976 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.5
  Mn_catalase 106 rndsHai.vsglgamlvdsa 124
                   n++H+i  sgl+ m ++s 
   CCG93196.1 194 ENQTHYIlISGLAGMIASSL 213
                  68888551577777777764 PP

>> COQ7  Ubiquinone biosynthesis protein COQ7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.3     0.018        45      20      58 ..      26      62 ..       7      67 .. 0.81
   2 ?    8.0   0.1   0.00085       2.2      21      59 ..     107     144 ..      94     155 .. 0.86
   3 ?    0.6   0.0      0.17   4.3e+02      15      57 ..     218     260 ..     206     313 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.018
        COQ7 20 YkgqlavlakkdpelkpllkemleqEkeHlatfeellke 58
                Y+  + +  +k+p+ k++l + +e+E++H  ++e+ lk+
  CCG93196.1 26 YRDIAEI--EKNPHKKEILLKLAETEEKHALKWEQELKT 62
                5555555..7899999*************9999888765 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00085
        COQ7  21 kgqlavlakkdpelkpllkemleqEkeHlatfeellker 59 
                   q+  + k +++l+++l+e +++Ek+H++++++l+k+ 
  CCG93196.1 107 LKQKELF-KGSAKLEQTLAELAKDEKDHVSILHNLIKKS 144
                 5566665.8889999*******************99985 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.17
        COQ7  15 gAvaiYkgqlavlakkdpelkpllkemleqEkeHlatfeellk 57 
                 gA    k+q+ v +++ ++ k+ ++e  ++E e +a+f +l+ 
  CCG93196.1 218 GAYLAAKSQKEVYEAEIAREKREIEENPQEEIEEMALFYQLQG 260
                 6777778888888777777788888888888888888887764 PP

>> Muted  Organelle biogenesis, Muted-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.3    0.0068        17      72     134 ..      20      80 ..       2      85 .. 0.81
   2 ?    0.7   0.3      0.24   6.1e+02      47      88 ..     103     144 ..      88     163 .. 0.54
   3 ?    7.8   0.3    0.0015       3.9     105     140 ..     222     257 ..     214     260 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0068
       Muted  72 kkleaalekverllqkeleeekrkseqlqekeeerkaeweeflkelqekkeevDeefeekvee 134
                 kk   a  ++ +++++ +++e     +l e+ee++  +we+ lk l + +ee D +f++ +e+
  CCG93196.1  20 KKTARAYRDIAEIEKNPHKKEI--LLKLAETEEKHALKWEQELKTLGQSCEETDSKFKRIIEK 80 
                 4556788889999999555555..899******************************987765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.24
       Muted  47 lvnelkeqllpkclesmkenLselnkkleaalekverllqke 88 
                  ++ lk++ l k  ++++++L el k  ++  +  ++l +k+
  CCG93196.1 103 ELRYLKQKELFKGSAKLEQTLAELAKDEKDHVSILHNLIKKS 144
                 344445555555555566666666666555556666665553 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0015
       Muted 105 erkaeweeflkelqekkeevDeefeekveelkekYs 140
                 + k+++e +  e++++k+e++e+ +e++ee++  Y+
  CCG93196.1 222 AAKSQKEVYEAEIAREKREIEENPQEEIEEMALFYQ 257
                 568999************************999987 PP

>> DUF2247  Uncharacterized protein conserved in bacteria (DUF2247)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   4.5      0.05   1.3e+02      36      89 ..      31      86 ..      10     109 .. 0.73
   2 ?    9.1   0.1   0.00041       1.1      43      86 ..     119     162 ..      99     185 .. 0.78
   3 ?    0.5   0.3      0.18   4.5e+02      84     124 ..     230     270 ..     220     287 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.05
     DUF2247 36 llekgeaseelileLafleekeeeelknllkklaseekkidee..leerkwlyvvL 89
                ++ek+  ++e++l+La  eek   + ++ lk l + +++ d +     +kwl   L
  CCG93196.1 31 EIEKNPHKKEILLKLAETEEKHALKWEQELKTLGQSCEETDSKfkRIIEKWLNQNL 86
                35888889**************9999999999988866666550056799997766 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00041
     DUF2247  43 seelileLafleekeeeelknllkklaseekkideeleerkwly 86 
                  e+++ eLa  e++    l nl+kk    e+kid  l+ +kw  
  CCG93196.1 119 LEQTLAELAKDEKDHVSILHNLIKKSPAPENKIDTILTREKWHG 162
                 47889999999999999999999999999*************75 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.18
     DUF2247  84 wlyvvLkelkelskdfeepLeeveeiyadfdyPeeienfir 124
                 +++++ +e +e +++ +e +ee   +y+  ++ ee ++ i+
  CCG93196.1 230 YEAEIAREKREIEENPQEEIEEMALFYQLQGFNEEESKWIA 270
                 55566666677777888888888888888887777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1418  (0.0790897); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 2563.73
//
Query:       CCG93197.1  [L=51]
Description: hypothetical protein MFUM_940072 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 386.15
//
Query:       CCG93198.1  [L=243]
Description: membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.062   13.5  16.4       0.74   10.1  14.5    3.0  2  Mpv17_PMP22  Mpv17 / PMP22 family


Domain annotation for each model (and alignments):
>> Mpv17_PMP22  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.016   2.9e+02       9      29 ..      21      41 ..      17      54 .. 0.77
   2 ?   10.1  14.5   4.1e-05      0.74      21      62 .]     191     231 ..     140     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.016
  Mpv17_PMP22  9 eeikeelkekfwptlkanwkv 29
                  eike +ke+++p+l+ ++ v
   CCG93198.1 21 GEIKEVFKENLLPALIIGVFV 41
                 4899**********9965544 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 4.1e-05
  Mpv17_PMP22  21 ptlkanwkvWppaqlinFyfvPlkfRvlfvnvvslgWntyLS 62 
                  ++l +nw +W+pa +++F+ +Pl ++++f+ ++ ++W  + S
   CCG93198.1 191 SLLLSNWIIWVPATTFLFA-MPLALQLPFAMCCYIVWSLIVS 231
                  3466**************8.7****************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1609.89
//
Query:       CCG93199.1  [L=498]
Description: putative aldehyde dehydrogenase dhaS [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-184  613.3   0.0   2.5e-184  613.1   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
     0.0097   15.4   0.0        0.3   10.5   0.0    2.1  2  DUF1487   Protein of unknown function (DUF1487)
  ------ inclusion threshold ------
       0.11   12.2   0.1       0.26   11.0   0.1    1.7  1  PYNP_C    Pyrimidine nucleoside phosphorylase C-terminal doma
       0.11   12.3   0.1       0.23   11.3   0.1    1.5  1  DUF1289   Protein of unknown function (DUF1289)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  613.1   0.0  5.6e-188  2.5e-184       1     462 []      27     494 ..      27     494 .. 0.98

  Alignments for each domain:
  == domain 1  score: 613.1 bits;  conditional E-value: 5.6e-188
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH..HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafk..awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaid 95 
                 wves s +t+++++Pat++++a + +a +edvd+av+aA++a++  aw++++++eR+++++k+adl+e+++eela++e+l++Gkpl+ a+  +v+ +i+
  CCG93199.1  27 WVESLSgNTFPSYDPATEQPLALIYEARKEDVDRAVDAARQAYEhgAWSRMSPAERSKLMMKLADLMEKHAEELAQIESLDNGKPLRAAQSsDVPASIE 125
                 888888788**********************************9999**************************************************** PP

                 HHHHHHHHHHHHSEEEEEEC....TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE-- CS
      Aldedh  96 vlryyaelaeklegevlpss....egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvt 190
                  +ry+a++a+k+eg+++p s     ++la++ +eP+Gvvg+I+PWN+Pll+a+wklapala+G+t++lKPae+tpl+al+l el+ eag+P+gv+n+++
  CCG93199.1 126 LFRYMAGWATKIEGNTIPFSlaspYRYLAYILKEPIGVVGQIIPWNYPLLMATWKLAPALATGCTIILKPAEQTPLTALRLGELIVEAGFPEGVVNILP 224
                 ****************9997789999************************************************************************* PP

                 SSTCCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHH CS
      Aldedh 191 gsgsevgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefvekl 289
                 g g+++g+a+++h ++dkv+ftGstevg+ i++aa +nlk++tlElGGk+p+iv++da+ldka+ +++++af+n+GQ+C+a+srl+++++iy+ef++++
  CCG93199.1 225 GFGETAGAAIANHCGIDKVAFTGSTEVGKSIVRAAVGNLKKLTLELGGKSPNIVFADAELDKAIGEAANAAFINSGQNCCAGSRLFIEKKIYEEFTKAI 323
                 *************************************************************************************************** PP

                 HHHHHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEES..SHHHH CS
      Aldedh 290 veaakklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfk..deeea 386
                 +++ak+l+vg ++d+++++GPlis++ql++v +yv++++ +ga++ +Gg    +  ekgyf++Pt+l+nv+ +m+++qeEiFGPV++ ++f+  +ee++
  CCG93199.1 324 TQQAKELRVGPGFDPNSQIGPLISAQQLQRVSSYVQSGIRQGANVGCGG---VRVGEKGYFFAPTLLTNVHAQMKVYQEEIFGPVVCAVPFDseKEEDL 419
                 *************************************************...7899************************************5457889 PP

                 HHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 387 ieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 i++aN+t yGLaag++tkd+++a+r+a++++aG+v+iN++++ ++   pfgG+kqSg+Gre+g+e+le+y+++k+v
  CCG93199.1 420 IKMANETIYGLAAGIWTKDISKAHRLAAKIKAGTVWINCYNVDDPAL-PFGGYKQSGWGREMGHEVLENYLQTKSV 494
                 ****************************************9999999.**************************97 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.02        89       9      60 ..     277     330 ..     274     333 .. 0.76
   2 !   10.5   0.0   6.7e-05       0.3     122     172 ..     411     462 ..     390     466 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.02
     DUF1487   9 vifedgDlnsalealves..lkePfaegavatvlveesirdefvervrsklkpl 60 
                 ++f+d++l++a+   +++  ++   ++ a   +++e++i +ef + + ++ k+l
  CCG93199.1 277 IVFADAELDKAIGEAANAafINSGQNCCAGSRLFIEKKIYEEFTKAITQQAKEL 330
                 788899999888777665213444455566689***************999887 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 6.7e-05
     DUF1487 122 FrnakEvvkllak.eslkfasvsvwneklaavyelvarlnvdvftiNCakvs 172
                 F + kE   ++   e++   +  +w + +++++ l+a+++  ++ iNC++v+
  CCG93199.1 411 FDSEKEEDLIKMAnETIYGLAAGIWTKDISKAHRLAAKIKAGTVWINCYNVD 462
                 66666666665440455556778**************************986 PP

>> PYNP_C  Pyrimidine nucleoside phosphorylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   5.8e-05      0.26      47      73 ..      44      70 ..      42      72 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.8e-05
                TSEEEEEEESSSCHHHHHHHHHHHHEE CS
      PYNP_C 47 GeplatiYankeekleeavkklkkaik 73
                ++pla iY+ ++e++++av+++++a++
  CCG93199.1 44 EQPLALIYEARKEDVDRAVDAARQAYE 70
                79**********************997 PP

>> DUF1289  Protein of unknown function (DUF1289)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   5.1e-05      0.23      21      45 ..      66      90 ..      65      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.1e-05
     DUF1289 21 RtldEiaaWssmsdeerravlarle 45
                R+  E  aWs+ms++er +++ +l+
  CCG93199.1 66 RQAYEHGAWSRMSPAERSKLMMKLA 90
                888899**************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.52
# Mc/sec: 2906.25
//
Query:       CCG93200.1  [L=281]
Description: hypothetical protein MFUM_940075 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0075   15.8   2.9      0.054   13.0   2.9    2.1  1  Glyco_transf_8  Glycosyl transferase family 8
  ------ inclusion threshold ------
      0.028   14.3   0.3        0.1   12.5   0.1    2.0  2  Tobravirus_2B   Tobravirus 2B protein


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   2.9   6.1e-06     0.054      94     169 ..      81     169 ..       3     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.1e-06
  Glyco_transf_8  94 lylpelfpkldkilylDaDvvvqgdlseLwdldlkgkvlaaved................krfkkylnksepliaenfkpeacyFnaGvllf 169
                     l+++e+ +k+d ++ lD D+v+ +d+s++++     +vla +                  k+f+ ++ +++   ++++k    ++n Gv+++
      CCG93200.1  81 LRIFEIQKKYDYLIVLDNDIVIARDFSSYISS---SHVLAKIDYhdylslfsledymqlfKYFNLEMPSKTYNTESHDKLTYPHYNVGVMII 169
                     56789999*******************98763...45666666667777777789999999999999999999999999**********997 PP

>> Tobravirus_2B  Tobravirus 2B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.29   2.6e+03      60      89 ..      34      63 ..      27      82 .. 0.79
   2 ?   12.5   0.1   1.1e-05       0.1      43      81 ..     165     204 ..     131     217 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.29
  Tobravirus_2B 60 pmcinhkGavyirvkdgedvyyqkfGeldv 89
                     c+ +  av   v++    y + f e+dv
     CCG93200.1 34 GGCLAKSAAVVCFVNSIRPEYQKAFQEMDV 63
                   557777788888888888888888888887 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.1e-05
  Tobravirus_2B  43 dlssipksfisfvdnrlpmcinhkGavyirvkdge.dvyy 81 
                     +  ipk ++ ++ +    cin+   vy ++k+ e + yy
     CCG93200.1 165 GVMIIPKIYVDIIRKEWANCINDLIRVYPKLKTIEkQSYY 204
                    4678****************************76615677 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2048.91
//
Query:       CCG93201.1  [L=361]
Description: DegT/DnrJ/EryC1/StrS family aminotransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-84  281.9   0.0    1.1e-83  281.6   0.0    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
      2e-06   27.3   0.1    5.5e-06   25.9   0.1    1.6  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00016   20.8   0.0    0.00019   20.5   0.0    1.2  1  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.6   0.0   1.8e-87   1.1e-83       9     358 ..      19     353 ..      13     356 .. 0.93

  Alignments for each domain:
  == domain 1  score: 281.6 bits;  conditional E-value: 1.8e-87
                      HHHHHHTSS-SSS.SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-G CS
  DegT_DnrJ_EryC1   9 aveevlksgwlts.gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidp 101
                      +++ + + +wlt+ gp v+eFE+++++yl+ ++ + vs+Gt Al+laL+ l+++   eVI+ +++F+at +a+l+ g +p++vD+  dt+ni+ 
       CCG93201.1  19 YLKLIWEKEWLTNnGPMVREFEARLKEYLNLDYIVYVSNGTIALQLALKILNIK--GEVITSPFSFIATTSAILWEGCEPQMVDIFSDTLNINT 110
                      566778899*********************************************..9************************************* PP

                      GGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS-SSS-EEEEESTHHHHHHHH CS
  DegT_DnrJ_EryC1 102 aaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnlttGeGGavvtndeelaekar 195
                      + ie+ait rt+aIl+ h++G+++d++++++i +k+ lk+i D A+A+G+ y+++ + a+gd+a++SF++tK + t eGGa+v +++e+++k+r
       CCG93201.1 111 SLIEEAITDRTSAILVPHIFGNPCDVQKIEEIGKKYRLKIIYDGAQAFGTYYDNRSIFAYGDIATISFHATKLFHTVEGGALVVRSKEIERKLR 204
                      ********************************************************************************************** PP

                      HHHBTTCECCTCSSCECCSS---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSSSEEESCEEEEEHCCHHHC CS
  DegT_DnrJ_EryC1 196 vlrnhGlkrkaekryvgevelGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketkkhawhlyavlveeeaevk 289
                      ++rn+G++    ++y     lG+n++ +e++AA+gl  L ++++++++R++i e+y+++L++l+ + +++ ++ t+  ++ +y+v+ +e++   
       CCG93201.1 205 MMRNFGFA----DEYAICG-LGINAKNSELHAAMGLCNLFHVKDIINERKRISERYDKNLEGLPIK-KQKIAEGTQ-YNYSYYPVIFPEKDV-- 289
                      ********....8999888.********************************************76.778888887.89*********9944.. PP

                      HHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHH CS
  DegT_DnrJ_EryC1 290 rdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVve 358
                       +  v + +++gi  + +++  l+++++ ++r     + +p++e +aer+l+Lp+y +l+  +vd + e
       CCG93201.1 290 LEWTVSQCQKMGIFPKRYFYPSLNQLSFLKKR-----TFCPVSEYIAERILCLPMYNNLSVSTVDLISE 353
                      5666999*******999997666666655555.....249********************999998766 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   9.3e-10   5.5e-06      32     216 ..      34     287 ..      27     303 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 9.3e-10
                      HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHH..HHHHS--S-T CS
  Beta_elim_lyase  32 ktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlek..leaaikevga 123
                      + v+++e++++e++  +++++v +Gt A +++lkil  +ge v   +++ + f  t  +   +g +++ +++ +  +++++   +e+ai+    
       CCG93201.1  34 PMVREFEARLKEYLNLDYIVYVSNGTIALQLALKILNIKGE-V---ITSPFSFIATTSAILWEGCEPQMVDIFS-DTLNINTslIEEAIT---- 118
                      77999*******************************95544.4...3556666666667788999999999988.555555311555555.... PP

                      TS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEE..SSSTT--SS-EEEEE-HH.. CS
  Beta_elim_lyase 124 heekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtms..lkKdllanvGgvlafrddel 215
                        +++++i++        G++  ++   ++ +i kky +++++DgA  +        + +++f+y D+ t+s  ++K  ++  Gg l++r +e+
       CCG93201.1 119 --DRTSAILVPHI--F--GNPCDVQ---KIEEIGKKYRLKIIYDGAQAFGTY----YDNRSIFAYGDIATISfhATKLFHTVEGGALVVRSKEI 199
                      ..57889987643..3..7777665...5667889***********998876....899*********999933578888877899***99988 PP

                      ........................................................................................ CS
  Beta_elim_lyase 216 .......................................................................................e 216
                                                                                                             +
       CCG93201.1 200 erklrmmrnfgfadeyaicglginaknselhaamglcnlfhvkdiinerkriserydknleglpikkqkiaegtqynysyypvifpeK 287
                      8999999999999999999999999999999999999998885555555555555555555555555555555555555555555555 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.2e-08   0.00019      44     183 ..      35     161 ..      30     259 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.2e-08
                  HHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEE CS
  Aminotran_5  44 aveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektk 141
                  +v+e +++++e +n +    i+++s++t a++l+++ l    + + e++++     a++   + l + +  + + i + ++ +++++ +e++++++t+
   CCG93201.1  35 MVREFEARLKEYLNLDY---IVYVSNGTIALQLALKIL----NIKGEVITSPFSFIATT--SAILWEGCEPQMVDI-FSDTLNINTSLIEEAITDRTS 122
                  57788889999999998...********9999999888....7899*****99998888..222332333333333.346779999************ PP

                  EEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS CS
  Aminotran_5 142 lvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghi 183
                  ++ + h   + G+  +v++i ++ kk+   ++ D+aqa+g +
   CCG93201.1 123 AILVPH---IFGNPCDVQKIEEIGKKYRLKIIYDGAQAFGTY 161
                  ***999...589999999999999**************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2516.44
//
Query:       CCG93202.1  [L=49]
Description: hypothetical protein MFUM_940077 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.30s 00:00:00.68 Elapsed: 00:00:00.45
# Mc/sec: 325.62
//
Query:       CCG93203.1  [L=57]
Description: hypothetical protein MFUM_940078 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.043   13.7   0.0      0.054   13.4   0.0    1.1  1  DUF3926   Protein of unknown function (DUF3926)


Domain annotation for each model (and alignments):
>> DUF3926  Protein of unknown function (DUF3926)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     3e-06     0.054       5      36 ..       3      34 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3e-06
     DUF3926  5 eELPaPIQQSAkkvLNILQEELSSymqEttHs 36
                ++ P+P+   A ++  + Q EL S +    H+
  CCG93203.1  3 DDVPSPLVAQATQMTLVTQHELGSDPSNYHHH 34
                689*************************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 446.98
//
Query:       CCG93204.1  [L=77]
Description: hypothetical protein MFUM_940079 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 534.28
//
Query:       CCG93205.1  [L=287]
Description: 2-polyprenylphenol hydroxylase or related flavodoxin oxidoreductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-16   60.2   0.0    4.6e-16   59.4   0.0    1.3  1  NAD_binding_1    Oxidoreductase NAD-binding domain
    1.6e-07   31.0   0.4    3.5e-07   29.9   0.4    1.6  1  DHODB_Fe-S_bind  Iron-sulfur cluster binding domain of dihydr
    0.00053   20.1   0.0      0.065   13.3   0.0    2.2  2  NAD_binding_6    Ferric reductase NAD binding domain
     0.0016   18.7   0.0      0.003   17.9   0.0    1.4  1  FAD_binding_6    Oxidoreductase FAD-binding domain
  ------ inclusion threshold ------
      0.054   13.4   0.0      0.099   12.5   0.0    1.4  1  DUF169           Uncharacterised ArCR, COG2043
      0.064   13.8   0.1       0.12   12.9   0.1    1.4  1  CIAPIN1          Cytokine-induced anti-apoptosis inhibitor 1,


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   1.5e-19   4.6e-16       1     107 [.     124     227 ..     124     228 .. 0.90

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 1.5e-19
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    +iagG G+ P++s++  ++++ +  +++ l+yG+rt +d+ly+++le+l++ ++ ++  +av+  ++++w+g  g v + +     s   ++t v+
     CCG93205.1 124 LIAGGIGLPPLWSTIPFFVQNRSCYGRISLLYGVRTPQDILYKDKLETLSNGKDISV-KIAVELATARTWNGHIGNVLNLISHAQFS--PPSTIVF 216
                    7********************99**************************77777754.45567899*************99666666..9****** PP

                    EECSHHHHHHH CS
  NAD_binding_1  97 vCGppgMikav 107
                    vCGp++M++++
     CCG93205.1 217 VCGPEPMMRFC 227
                    ********986 PP

>> DHODB_Fe-S_bind  Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.4   1.2e-10   3.5e-07       1      41 [.     246     278 ..     246     279 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.2e-10
                      ----SSSSSSS-TTEEEETTCTT.CEEETTTT-CEEECCCB CS
  DHODB_Fe-S_bind   1 eerMaCGvGaClgCvvktkggdggeykrvCkdGPvFdadev 41 
                      e+ M C++G C++C             ++Ck+GPvF ++ +
       CCG93205.1 246 ERNMQCAIGSCGHCQFGP--------LFLCKNGPVFSYQTI 278
                      899**************9........9*********99877 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.2e-05     0.065       3      64 ..     121     177 ..     119     191 .. 0.79
   2 !    5.0   0.0    0.0081        24     121     148 ..     199     224 ..     170     229 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.2e-05
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   3 nvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeks 64 
                     +ll+agGiG++p+ s +  ++++ +       +i+l   vr  +++ ++kd L++l++ k 
     CCG93205.1 121 DILLIAGGIGLPPLWSTIPFFVQNRS----CYGRISLLYGVRTPQDI-LYKDKLETLSNGKD 177
                    689***************99999988....77888888888888887.56666666666554 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0081
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 121 lkevlkdiaskhknssvgvfvCGppklv 148
                    + ++++++  +    s+ vfvCGp+ ++
     CCG93205.1 199 VLNLISHA--QFSPPSTIVFVCGPEPMM 224
                    44444444..66778999******9886 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     1e-06     0.003      11      96 ..      29     110 ..      22     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1e-06
                    CTTEEEEEE.EESTTTS-----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE-S CS
  FAD_binding_6  11 sedtrifrf.klpsekqklglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtleikGPlGk 96 
                     e tri+++   p ek++  + +Gq++++++   ge    + +++ +  ++ +  l v+ +  G ++ +++++k gd l ++GP+G+
     CCG93205.1  29 VECTRIVSLwIAPLEKNECTFNPGQFLMVYVFGVGE---VALSIADNGGDQEKYLLTVRSV--GSVTRVIEHAKEGDILGVRGPFGN 110
                    5556666663346788999*************8887...6899999999999998999987..**********************97 PP

>> DUF169  Uncharacterised ArCR, COG2043
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.3e-05     0.099     109     154 ..     200     246 ..     166     254 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.3e-05
      DUF169 109 vapLekaefe.PdvvvffanpeqlmrLvqlalydrgggrlnvsfpgn 154
                 +   + a+f  P ++vf++ pe +mr++   l ++g  ++n+ f+++
  CCG93205.1 200 LNLISHAQFSpPSTIVFVCGPEPMMRFCAYTLLKYGIAKENIYFSME 246
                 55567788999************************999999998875 PP

>> CIAPIN1  Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   3.9e-05      0.12      57      87 ..     243     273 ..     221     284 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.9e-05
     CIAPIN1  57 aevdftvegktssCgsCaLGDafrCsgCPyl 87 
                   ++  ++ + +sCg C++G  f C++ P +
  CCG93205.1 243 FSMERNMQCAIGSCGHCQFGPLFLCKNGPVF 273
                 36788899999***************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1884.81
//
Query:       CCG93206.1  [L=381]
Description: Ferredoxin [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-32  109.7   9.2    9.8e-32  109.7   9.2    2.1  2  Fer4_22   4Fe-4S dicluster domain
    8.2e-08   32.6   3.4    8.2e-08   32.6   3.4    2.2  2  Fer4_8    4Fe-4S dicluster domain
    6.9e-07   29.5   3.1     0.0019   18.4   0.1    2.6  2  Fer4_18   4Fe-4S dicluster domain
    8.4e-07   28.7  12.3     0.0025   17.8   3.8    2.8  2  Fer4_2    4Fe-4S binding domain
    4.3e-05   24.0  11.8     0.0066   17.0   0.1    2.9  2  Fer4_17   4Fe-4S dicluster domain
    4.9e-05   23.0  14.8      0.014   15.2   2.8    2.7  2  Fer4      4Fe-4S binding domain
    7.7e-05   23.6   6.8      0.044   14.7   0.5    2.9  2  Fer4_16   4Fe-4S double cluster binding domain
    8.8e-05   22.5  16.0     0.0036   17.4   0.2    2.8  3  Fer4_10   4Fe-4S dicluster domain
    0.00028   21.4   8.6      0.027   15.0   3.1    2.8  2  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I
    0.00075   19.6  18.0     0.0024   18.0  12.2    3.1  3  Fer4_9    4Fe-4S dicluster domain
      0.002   18.7  13.9      0.002   18.7  13.9    2.9  3  Fer4_7    4Fe-4S dicluster domain
     0.0048   16.9  17.9       0.27   11.4   4.1    2.6  2  Fer4_6    4Fe-4S binding domain
  ------ inclusion threshold ------
       0.02   15.0   0.6       0.02   15.0   0.6    2.7  2  Fer4_21   4Fe-4S dicluster domain
      0.028   15.4   4.2      0.028   15.4   4.2    3.0  2  Fer4_3    4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   1.5         3   3.9e+03       7      22 ..     162     177 ..     158     197 .. 0.74
   2 !  109.7   9.2   7.6e-35   9.8e-32       1      96 []     268     362 ..     268     362 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3
     Fer4_22   7 aCtlvCptCsCfdved 22 
                 +C    + C+C ++  
  CCG93206.1 162 QCGQSSSCCFCLSMGT 177
                 5777777889988755 PP

  == domain 2  score: 109.7 bits;  conditional E-value: 7.6e-35
     Fer4_22   1 rClsCgaCtlvCptCsCfdvedetkeeskegervrvwdsClleeftkvaggenvrkekkerlrqrllhklsefkekfgesgCvGCgRCieacpvki 96 
                 rC++C++CtlvCptC+C++ved+++ +++++er+++wd C  +ef+++ +g +vr++ ++r+rq+l hkl+++ ++fg+sgCvGCgRCi++cpv+i
  CCG93206.1 268 RCIACSTCTLVCPTCFCWTVEDSISLTDQKAERWKRWDFCYNMEFSHLPSG-SVRSSIRSRYRQWLSHKLASWIDQFGMSGCVGCGRCITWCPVGI 362
                 7***********************88999**********************.*****************************************987 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.4       4.3   5.4e+03      50      57 ..     162     169 ..     127     196 .. 0.71
   2 !   32.6   3.4   6.4e-11   8.2e-08       2      65 .]     266     362 ..     264     362 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.3
      Fer4_8  50 sCttcgaC 57 
                 +C +  +C
  CCG93206.1 162 QCGQSSSC 169
                 33333333 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 6.4e-11
      Fer4_8   2 lekCieCgaCqsaCpvlrrtk.khlldargeaae..........dvqeeqvlee..............................eealwsCttcgaCte 59 
                 +++Ci C+ C+  Cp++ ++  +++ +  +++ae                   e                              + ++  C++cg+C +
  CCG93206.1 266 ASRCIACSTCTLVCPTCFCWTvEDSISLTDQKAErwkrwdfcynM--------EfshlpsgsvrssirsryrqwlshklaswidQFGMSGCVGCGRCIT 356
                 589************999988777777777777755455555440........144444455555555555556677778999999************* PP

      Fer4_8  60 vCpvgi 65 
                  Cpvgi
  CCG93206.1 357 WCPVGI 362
                 ****97 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.8   0.00042      0.54      55      73 ..     263     281 ..     231     286 .. 0.82
   2 !   18.4   0.1   1.5e-06    0.0019      53      79 ..     340     366 ..     320     375 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
     Fer4_18  55 ekgagdcidcescvkvcPt 73 
                 ++ a+ ci+c++c  vcPt
  CCG93206.1 263 DDVASRCIACSTCTLVCPT 281
                 556789************9 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.5e-06
     Fer4_18  53 rkekgagdcidcescvkvcPtgidirk 79 
                   + g++ c+ c+ c++ cP+gidi +
  CCG93206.1 340 IDQFGMSGCVGCGRCITWCPVGIDITE 366
                 56678899*****************86 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   3.8     2e-06    0.0025       7      22 .]     266     281 ..     259     281 .. 0.84
   2 !   15.2   1.3   1.3e-05     0.016       8      21 ..     346     359 ..     339     360 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2e-06
      Fer4_2   7 tdrCigCgaCvsaCPa 22 
                 + rCi+C++C+ +CP+
  CCG93206.1 266 ASRCIACSTCTLVCPT 281
                 56*************7 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.3e-05
      Fer4_2   8 drCigCgaCvsaCP 21 
                   C+gCg C++ CP
  CCG93206.1 346 SGCVGCGRCITWCP 359
                 56************ PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.5   2.5e-05     0.032      34      58 ..     257     281 ..     228     283 .. 0.69
   2 !   17.0   0.1   5.1e-06    0.0066      27      61 .]     329     363 ..     302     363 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.5e-05
     Fer4_17  34 leeaekeekaslCieCgeCerkCPq 58 
                  e    +++as+Ci C  C+ +CP 
  CCG93206.1 257 WEHPRWDDVASRCIACSTCTLVCPT 281
                 334455689**************95 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 5.1e-06
     Fer4_17  27 raaklglleeaekeekaslCieCgeCerkCPqgld 61 
                 r++ +++l   +++  +s C++Cg+C + CP g+d
  CCG93206.1 329 RQWLSHKLASWIDQFGMSGCVGCGRCITWCPVGID 363
                 3344466666677789***************9987 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.8   1.1e-05     0.014       6      20 ..     267     281 ..     264     281 .. 0.93
   2 !   12.4   4.3   8.1e-05       0.1       8      21 ..     348     361 ..     343     362 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
                 TTSSS-THHHHHSTT CS
        Fer4   6 ekCigCGaCvevCPv 20 
                 ++Ci+C +C  vCP+
  CCG93206.1 267 SRCIACSTCTLVCPT 281
                 89************7 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8.1e-05
                 SSS-THHHHHSTTT CS
        Fer4   8 CigCGaCvevCPvg 21 
                 C+gCG+C+  CPvg
  CCG93206.1 348 CVGCGRCITWCPVG 361
                 ************98 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   1.0   0.00045      0.57       1      14 [.     268     281 ..     231     302 .. 0.84
   2 !   14.7   0.5   3.4e-05     0.044       2      20 ..     348     367 ..     347     381 .] 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00045
     Fer4_16   1 rCgtCgkCaevCPt 14 
                 rC+ C  C+ vCPt
  CCG93206.1 268 RCIACSTCTLVCPT 281
                 46666666666666 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 3.4e-05
     Fer4_16   2 CgtCgkCaevCPtna.ikek 20 
                 C++Cg+C+  CP++  i+e+
  CCG93206.1 348 CVGCGRCITWCPVGIdITEE 367
                 *************9766665 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3       3.4   4.4e+03      38      48 ..     162     172 ..     126     193 .. 0.73
   2 !   13.1   4.6   6.2e-05     0.079       6      37 ..     266     298 ..     261     311 .. 0.67
   3 !   17.4   0.2   2.8e-06    0.0036       7      24 ..     346     365 ..     340     380 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.4
     Fer4_10  38 vrkkvekCtgc 48 
                 + + +++C +c
  CCG93206.1 162 QCGQSSSCCFC 172
                 44445555555 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 6.2e-05
     Fer4_10   6 ddtCirCgkCvkaCPadl.tsvgakgeaseeea 37 
                 +++Ci C +C+ +CP+++ ++v+ +   ++++a
  CCG93206.1 266 ASRCIACSTCTLVCPTCFcWTVEDSISLTDQKA 298
                 579*************88833333333333333 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 2.8e-06
     Fer4_10   7 dtCirCgkCvkaCPadl..t 24 
                 + C++Cg+C + CP+ +  t
  CCG93206.1 346 SGCVGCGRCITWCPVGIdiT 365
                 67*************65431 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   3.1   2.1e-05     0.027       4      30 ..     267     293 ..     264     303 .. 0.82
   2 !    8.6   0.3    0.0022       2.8       5      33 ..     347     375 ..     345     381 .] 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.1e-05
     Fer4_13   4 dtCiacgaCvelaPdvFeeddeggasv 30 
                 ++Ciac +C  ++P +F    e++ s 
  CCG93206.1 267 SRCIACSTCTLVCPTCFCWTVEDSISL 293
                 68***************9988887664 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0022
     Fer4_13   5 tCiacgaCvelaPdvFeeddeggasvvae 33 
                  C++cg C   +P   ++ +e  a +v+ 
  CCG93206.1 347 GCVGCGRCITWCPVGIDITEEVAALRVQS 375
                 7************8888888877777765 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.5      0.66   8.5e+02      20      39 ..     142     172 ..     124     194 .. 0.65
   2 !   12.6   4.0   8.8e-05      0.11      33      48 ..     257     281 ..     231     284 .. 0.71
   3 !   18.0  12.2   1.9e-06    0.0024       1      49 [.     268     361 ..     268     363 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.66
      Fer4_9  20 daaerkarlraase...........eaCigC 39 
                  +++ ka +r+++e           ++C +C
  CCG93206.1 142 GSSRDKAYVRRREEafvivvqcgqsSSCCFC 172
                 5555555555555566666555556677777 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 8.8e-05
      Fer4_9  33 e.........eaCigCgaCveaCpk 48 
                 +         ++Ci C +C+ +Cp+
  CCG93206.1 257 WehprwddvaSRCIACSTCTLVCPT 281
                 144555667789999****999997 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 1.9e-06
      Fer4_9   1 kCtgCgaCveaCpagvv.vedaaerkarlraase............................................eaCigCgaCveaCpkg 49 
                 +C+ C +C+ +Cp++ + + +++     ++a+++                                            + C+gCg+C+  Cp g
  CCG93206.1 268 RCIACSTCTLVCPTCFCwTVEDSISLTDQKAERWkrwdfcynmefshlpsgsvrssirsryrqwlshklaswidqfgmSGCVGCGRCITWCPVG 361
                 6************999855555555555555555999*****************************************99************98 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.4       2.6   3.4e+03      32      41 ..     163     172 ..     124     195 .. 0.53
   2 !   12.2   3.4   0.00017      0.21      27      50 ..     258     281 ..     228     283 .. 0.74
   3 !   18.7  13.9   1.6e-06     0.002       1      52 []     268     362 ..     268     362 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.6
      Fer4_7  32 eidpekClgC 41 
                  +++++C +C
  CCG93206.1 163 CGQSSSCCFC 172
                 3455556666 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00017
      Fer4_7  27 gtekveidpekClgCgaCvavCPt 50 
                 + ++++ ++++C+ C  C  vCPt
  CCG93206.1 258 EHPRWDDVASRCIACSTCTLVCPT 281
                 336778889999999999999997 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 1.6e-06
      Fer4_7   1 rCigCgaCvaaCp.......vkaieldeeenekgtekv.....................................eidpekClgCgaCvavCPtga 52 
                 rCi C  C+ +Cp        + i+l+++ ++++ +++                                     ++ ++ C+gCg+C++ CP+g+
  CCG93206.1 268 RCIACSTCTLVCPtcfcwtvEDSISLTDQ-KAERWKRWdfcynmefshlpsgsvrssirsryrqwlshklaswidQFGMSGCVGCGRCITWCPVGI 362
                 8***********85433333333334333.23333333444444445555555566666666666888889999999*****************96 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   5.9   0.00039       0.5       6      21 ..     266     281 ..     260     282 .. 0.92
   2 !   11.4   4.1   0.00021      0.27       9      22 ..     348     361 ..     347     364 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00039
      Fer4_6   6 pdkCigCgdCvrvCPe 21 
                 +++Ci C  C+ vCP+
  CCG93206.1 266 ASRCIACSTCTLVCPT 281
                 589************7 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00021
      Fer4_6   9 CigCgdCvrvCPeg 22 
                 C+gCg+C++ CP g
  CCG93206.1 348 CVGCGRCITWCPVG 361
                 ************97 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.3   7.6e-05     0.097      37      54 ..     265     282 ..     252     287 .. 0.82
   2 ?   15.0   0.6   1.5e-05      0.02      39      53 ..     346     360 ..     334     366 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.6e-05
     Fer4_21  37 vedeCvGCnlCssvCPve 54 
                 v+++C++C  C+ vCP+ 
  CCG93206.1 265 VASRCIACSTCTLVCPTC 282
                 6789************85 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.5e-05
     Fer4_21  39 deCvGCnlCssvCPv 53 
                 + CvGC  C++ CPv
  CCG93206.1 346 SGCVGCGRCITWCPV 360
                 56************9 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   9.7       0.1   1.3e+02       1      13 [.     269     281 ..     269     282 .. 0.95
   2 ?   15.4   4.2   2.2e-05     0.028       1      15 []     348     362 ..     348     362 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.1
      Fer4_3   1 CtgCgaCvevCPv 13 
                 C+ C++C  vCP+
  CCG93206.1 269 CIACSTCTLVCPT 281
                 9***********6 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.2e-05
      Fer4_3   1 CtgCgaCvevCPvgA 15 
                 C+gCg+C  +CPvg+
  CCG93206.1 348 CVGCGRCITWCPVGI 362
                 *************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2771.26
//
Query:       CCG93207.1  [L=341]
Description: Dihydroorotate dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-16   58.7   0.0    3.2e-15   56.1   0.0    1.8  2  DHO_dh     Dihydroorotate dehydrogenase
  ------ inclusion threshold ------
      0.067   12.2   0.1       0.74    8.8   0.0    2.1  2  FMN_dh     FMN-dependent dehydrogenase
      0.091   11.6   0.1       0.99    8.2   0.0    2.5  2  Trp_syntA  Tryptophan synthase alpha chain


Domain annotation for each model (and alignments):
>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.049   2.9e+02       2      42 ..       5      46 ..       4      57 .. 0.80
   2 !   56.1   0.0   5.3e-19   3.2e-15      79     295 .]      90     292 ..      73     292 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.049
                G-EEETTEEESSSEEE.-TTSSTTSSSHHHHHCTTSSEEEEE CS
      DHO_dh  2 latkvlglkfknpigl.AaGfdkegeeilkllklgfgaieig 42
                l+t+ lglk+  p+++ A+ + k  + +++l ++g+gai + 
  CCG93207.1  5 LETTYLGLKLSSPLIPsASPLSKSLDTVKALEEIGAGAIVLY 46
                889999999999999735567888888888888889988765 PP

  == domain 2  score: 56.1 bits;  conditional E-value: 5.3e-19
                 HHHHHHHHHHHHHHCC.CEEEEEEE-TTSS.HHHHHHHHHHHHG.GGESEEEEES.-SCTCCTSCCCGCHHHHHHHHHHHHHHHHSSEEEEEE-SSSSH CS
      DHO_dh  79 avlekllkrrkeqeekkelginlskakktenavddyvevvrkig.pfadilelNv.SsPntpglrdlqekeelkaillkvvkevskvpvlvKlaPdltd 175
                 ++l+    ++++ +e+ ++++++s + ++      +++  + ++   ad+lelN+ S P  p   +   +++  +i+ +  + + k+p+ vKl+P  t+
  CCG93207.1  90 YYLD----HLRRVKETVAIPVIASLNAQS---PGQWIKFSKLLEqAGADALELNIySIPCDPTMSSSDLEQKYLEIIRSCRQSI-KIPIAVKLSPYFTN 180
                 4444....44444455689*******999...788888888888677********66688888888888888777776666655.6*********7777 PP

                 HHHHHHHHHHHHHTECEEEE...BSEE--CTTCCGCCCCTTSSEEEEEGGGHHHHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESH CS
      DHO_dh 176 eekkdiadvllelkldgiivtNttvqrlaidlkseknvkanktGGlsGkalkdialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvyt 274
                 +  +    +l++ +++g++  N   q + idl++  nv+ ++   ls +    + +  i  ly+r+k  +   ++GG+ s+ Dal  i  GA+ vq+ +
  CCG93207.1 181 FLSF--STELAKIGINGLVLFNRFFQPD-IDLENL-NVE-PRIT-LSTESELLLRITWIGILYDRIK--LDFSATGGVLSASDALKAILSGATTVQLCS 271
                 6554..57889**************999.999984.344.5666.99999999999***********..99**************************** PP

                 HHHHHGTCHHHHHHHHHHHHH CS
      DHO_dh 275 alvfegpkiakkikkeleelL 295
                 al f+g    k ik+++ e +
  CCG93207.1 272 ALLFHGIDYLKTIKNGIIEWM 292
                 ****************98865 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.028   1.6e+02      46      69 ..       3      26 ..       1      43 [. 0.83
   2 ?    8.8   0.0   0.00012      0.74     276     305 ..     246     275 ..     235     304 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.028
                -B--EEETTEEESSSEEE--BSTG CS
      FMN_dh 46 vdlsttllGqklslPvliaPvgla 69
                v+l+tt lG kls+P++ ++  l+
  CCG93207.1  3 VSLETTYLGLKLSSPLIPSASPLS 26
                789*************98876555 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00012
                 EESS--SHHHHHHHHHTT-SEEEESHHHHH CS
      FMN_dh 276 vDgGirrGsDvlkAlalGAdavllGRpfly 305
                 + gG+ + sD+lkA+  GA+ v l  ++l+
  CCG93207.1 246 ATGGVLSASDALKAILSGATTVQLCSALLF 275
                 569*******************98777765 PP

>> Trp_syntA  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.27   1.6e+03      24      42 ..      26      44 ..      22      53 .. 0.79
   2 ?    8.2   0.0   0.00017      0.99       9     120 ..     100     197 ..      92     207 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.27
                HHHHHHHHHHHHCT-SSEE CS
   Trp_syntA 24 eqsleilkalekagadviE 42
                 +sl+++kale+ ga +i 
  CCG93207.1 26 SKSLDTVKALEEIGAGAIV 44
                5678889999998888875 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00017
                 B-EEEEEEETTS.S-HHHHHHHHHHHHHCT-SSEEEE---S--TTS-HHHHHHHHCCCCTT--HHHHHHHHHHHHHHCSSS-EEEEE-CHHHCCC-HHH CS
   Trp_syntA   9 raafvpyvtagd.pdleqsleilkalekagadviElGlpfsdPladGPvIqaanlraLakgvtlekvlelveevrkkevevPivlltylnlvlsygeer 106
                 +++ +p ++     +  q ++  k le+agad++El + +s P    P++ +++l         +k le++++ r ++ ++Pi +   l + +  +  +
  CCG93207.1 100 ETVAIPVIASLNaQSPGQWIKFSKLLEQAGADALELNI-YSIPCD--PTMSSSDL--------EQKYLEIIRSCR-QSIKIPIAVK--LSPYF-TNFLS 183
                 5555666654330446788899999***********98.787763..76665553........467888888888.7777887642..22222.23334 PP

                 HCHHHHHCTEEEEE CS
   Trp_syntA 107 flaelkeagvdgli 120
                 f  el+++g++gl+
  CCG93207.1 184 FSTELAKIGINGLV 197
                 55777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2447.33
//
Query:       CCG93208.1  [L=1182]
Description: putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-74  249.6   0.0    4.6e-74  249.0   0.0    1.2  1  POR_N            Pyruvate flavodoxin/ferredoxin oxidoreductas
    2.4e-31  109.2   0.0    4.2e-31  108.4   0.0    1.4  1  POR              Pyruvate ferredoxin/flavodoxin oxidoreductas
    3.8e-20   71.4   0.0    1.8e-19   69.3   0.0    2.1  2  EKR              Domain of unknown function
    5.5e-12   45.7   0.1    2.1e-11   43.8   0.0    1.9  2  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
    2.3e-10   40.1  15.9    6.2e-07   29.2   1.5    3.2  3  Fer4_6           4Fe-4S binding domain
    2.7e-10   40.5   0.0    6.6e-10   39.2   0.0    1.7  1  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma
    5.6e-10   40.0   3.6    1.4e-09   38.7   3.6    1.7  1  Fer4_16          4Fe-4S double cluster binding domain
    1.7e-09   38.1   4.7    4.5e-09   36.8   4.7    1.8  1  Fer4_7           4Fe-4S dicluster domain
    2.3e-09   36.7  21.1    6.9e-06   25.7   1.4    3.2  3  Fer4             4Fe-4S binding domain
    5.4e-08   32.5  17.1    0.00054   19.9   3.8    3.3  3  Fer4_2           4Fe-4S binding domain
    1.5e-07   31.8   2.8     0.0087   16.6   0.2    2.6  2  Fer4_17          4Fe-4S dicluster domain
    1.8e-07   31.2  10.5    1.3e-06   28.4  10.5    2.2  1  Fer4_21          4Fe-4S dicluster domain
    2.6e-07   30.7   8.6      0.002   18.2   0.3    2.7  2  Fer4_10          4Fe-4S dicluster domain
    1.1e-06   28.7  17.6    5.4e-06   26.5   9.0    2.6  3  Fer4_9           4Fe-4S dicluster domain
    4.3e-05   23.7  15.8      0.003   17.9   1.3    3.1  3  Fer4_4           4Fe-4S binding domain
    7.7e-05   22.6   0.0    0.00024   21.0   0.0    1.8  1  Transketolase_C  Transketolase, C-terminal domain
    0.00036   21.2   2.4       0.03   15.0   0.2    2.7  2  Fer4_15          4Fe-4S single cluster domain
     0.0008   19.8   8.6     0.0022   18.4   7.5    2.2  2  Fer4_8           4Fe-4S dicluster domain
     0.0012   19.3   7.9      0.058   13.9   0.4    2.8  2  Fer4_13          4Fe-4S single cluster domain of Ferredoxin I
      0.006   16.8   5.7       0.16   12.2   0.5    2.4  2  Fer4_18          4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.027   15.4  17.6       0.36   11.9   4.1    2.8  2  Fer4_3           4Fe-4S binding domain
      0.065   12.8   0.0       0.14   11.7   0.0    1.5  1  MCR_beta         Methyl-coenzyme M reductase beta subunit, C-
      0.078   13.8   7.5        2.3    9.1   0.7    2.8  2  Fer4_22          4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> POR_N  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.0   0.0   5.9e-77   4.6e-74       3     230 ..      19     248 ..      17     249 .. 0.97

  Alignments for each domain:
  == domain 1  score: 249.0 bits;  conditional E-value: 5.9e-77
                 HHHCTEEEEEE--BTTTCCHHHHHCHCCCCCTT....EE.EEEE-SSHHHHHHHHHHHHCTT-EEEEEEECCHHHHCCCCHHHHHHTT--EEEEEEEEE CS
       POR_N   3 aiaagvdviaaYPITPsseiaeelaellakgev....gdvevvqmesEigaisaviGAaaaGaraaTaTSgqGllLmienlglaageelPvvivvvaRa 97 
                 a+ ++ +via+YPITPss+++e+++++ a+ ++      ++vv+m+sE g ++a +GA+++G++a T+T++qGllLm +n++++age lP+v++v+ R+
  CCG93208.1  19 AYLLS-EVIAIYPITPSSPMGEWVDKWRAERKTnlwgLLPQVVEMQSEGGVAGALHGALLTGSLASTFTASQGLLLMLPNMYKMAGELLPAVFHVASRT 116
                 56677.9*************************999985579********************************************************** PP

                 -STTBEEEEE--TTCHHHHS---EEEE-SSHHHHHHHHHHHHHHHHHCTSEEEEEEEHHHH.HEEEEEEC-SGG.GS-----SBXXXXXXXXSXXXBXX CS
       POR_N  98 lpstglsirtdqsDlmaardtglivlasenvqeafdlalvAfnlAekvrvPvivlfDgfllshevekvelpdeedelklikekleeyerkeyaldpekp 196
                 +++++lsi++d+sD+maar tg+++l+s++vqea dlal+A+  +++ ++P++++fDgf++she+++++  +e ++++li+ ++  + r++ +l+pe+p
  CCG93208.1 117 IATHALSIFGDHSDVMAARTTGFALLCSHSVQEAADLALIAHLSSLEASLPFLHFFDGFRTSHEINTIKQIEEGQIKELISVEAILKFRQR-GLNPERP 214
                 *****************************************************************************************99.******* PP

                 TXXTSSXXEEESBXBXTTSXBXXXXHHHHHHHHH CS
       POR_N 197 iargtaanpdtglehrekgneaedaaekvveeve 230
                 + +g  +npd+++++re++n+++ a++ +v++v+
  CCG93208.1 215 LLYGSSQNPDVFFQARERANPFYLACPGIVQNVM 248
                 ******************************9998 PP

>> POR  Pyruvate ferredoxin/flavodoxin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   0.0   5.4e-34   4.2e-31       1     176 [.     434     617 ..     434     618 .. 0.93

  Alignments for each domain:
  == domain 1  score: 108.4 bits;  conditional E-value: 5.4e-34
                 CTSTHHHHHHHHHHHH.HHTT-EEEEEEEEESSSSSSCEEEEEEEESS.-SSS--TTSEEEEEESSHHHHH..HHGGGEEEEEEEEEECTCGTT-CCHH CS
         POR   1 GGqGvvtagkilakaa.araGyyvqanreygseirGghsyshvrisdepivpsievgeadllvaldaetls..ehldglkpggiiiynseelkpdelkk 96 
                 G +G+v+a+k+ +k++  + G+ +q++++y+s+++G  ++sh+r++++pi +++ v+++d++ +++ e l+  + l+g+k+ggi+++ns  ++pde ++
  CCG93208.1 434 GSDGTVSANKNTIKIIgENVGLFAQGYFVYDSKKSGSLTISHLRFGSSPIAAPYLVEKPDFVGCHQFEFLFkyDILKGIKNGGILLVNS-PFSPDETWD 531
                 89**************9999**************************************************889****************.678888888 PP

                 HCTS-HHHHHHH.T-EEEEE-HHHHHHHCCC.CCHHHHHHHHHHHHHHT.S-HHHHHHHHHCCS-CH......HHHHHHHHHHHHHH CS
         POR  97 akeeerelkerl.gvrvygvdatkiakeiggneraaNtvmlGalaallg.lplealeeaikkrfpkkk.....eviekNlkafragy 176
                 + ++e ++k  + +++++++da kiak++g  +  +Nt+m+ a++ l+  +p+++ ++ ++++++  +     ev+ kN +a++++ 
  CCG93208.1 532 KIPREVQQKILSeRIQFFVIDAYKIAKDCGL-GSRINTIMQIAFFELTAlIPIDEALDYLREHIRSSYgyrgeEVVRKNFEALEKAL 617
                 8888888777779******************.*********************8888888888887668888***********9985 PP

>> EKR  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.5   2.7e+03      12      28 ..     240     256 ..     232     258 .. 0.87
   2 !   69.3   0.0   2.3e-22   1.8e-19       6      56 ..     637     685 ..     635     686 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.5
                 --HHHHHTHHHHHTT-G CS
         EKR  12 apefVkevlapinaqeG 28 
                  p  V++v++ + a  G
  CCG93208.1 240 CPGIVQNVMDRVGALTG 256
                 5789*******999887 PP

  == domain 2  score: 69.3 bits;  conditional E-value: 2.3e-22
                 --..----HHHHHTHHHHHTT-GGGS-GGGS-..TT-EE-SS-GGGT---- CS
         EKR   6 pkvpedapefVkevlapinaqeGDeLpVSafpgmeDGtfptGTsaYEKRgi 56 
                 p+v+e+ape+Vk v+++++a +GD+LpVSaf     G fpt+Ts++EKR+i
  CCG93208.1 637 PPVSEEAPEYVKSVIGEMIALRGDRLPVSAFS--PFGAFPTATSQWEKRNI 685
                 789*****************************..****************9 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.5   2.7e+03     118     142 ..     596     620 ..     592     628 .. 0.81
   2 !   43.8   0.0   2.7e-14   2.1e-11      46     151 ..     972    1083 ..     962    1085 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.5
                   HHTTSEEEEESSH.HHHHHHHHHHH CS
  TPP_enzyme_C 118 ealGakgarvekadveeleealkea 142
                    ++G +g  v +++ e le+alk+ 
    CCG93208.1 596 SSYGYRGEEVVRKNFEALEKALKAL 620
                   579999997778889******9976 PP

  == domain 2  score: 43.8 bits;  conditional E-value: 2.7e-14
                    TSEEEEEEEHHHHHHT.GGGHHHHHHTT-SEEEEEEE-SBCCCHHHH...HHHHTCCTTTTSBB.BS----HHHHHHHTTSE.EEEESS.H.HHH CS
  TPP_enzyme_C   46 drevvaivGDGgflmi.lqelatavrrnlpitvvvlnNegygmtggq...qepfggkrksgpagkdlkpvdfaklaealGak.garvek.advee 134 
                    ++ v+ + GDG  ++i l  l+++   n +++++vl+ e+y +tggq    +p+g+  k++++gk ++++d+a +a +lG   +a+v+  ad e+
    CCG93208.1  972 KKSVWIVGGDGWAYDIgLGGLIHVLALNFNVKILVLDTEVYSNTGGQaskATPRGAVAKFATSGKSTPKMDLALMAISLGNVyVASVSIgADEEH 1066
                    679***********************************************9*****************************999996554145788 PP

                    HHHHHHHHHCSSSEEEE CS
  TPP_enzyme_C  135 leealkealekkgpali 151 
                    +  a+ ea + +gp+li
    CCG93208.1 1067 TLSAFTEADAFEGPSLI 1083
                    89999999999999998 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   1.5   7.9e-10   6.2e-07       1      24 []     689     712 ..     689     712 .. 0.91
   2 !   18.4   2.7   2.1e-06    0.0017       2      21 ..     746     765 ..     745     772 .. 0.89
   3 ?   -0.7   0.1       2.2   1.7e+03       6      14 ..     825     833 ..     824     833 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 7.9e-10
      Fer4_6   1 vveidpdkCigCgdCvrvCPegai 24 
                 v+ + p++Ci+Cg+Cv++CP++++
  CCG93208.1 689 VPLWEPSLCIQCGKCVIACPHAVL 712
                 57899***************9875 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2.1e-06
      Fer4_6   2 veidpdkCigCgdCvrvCPe 21 
                 +++ +  C+gCg Cv+vCP+
  CCG93208.1 746 IAVSEADCTGCGICVDVCPA 765
                 6788889************7 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.2
      Fer4_6   6 pdkCigCgd 14 
                 p +C gCg+
  CCG93208.1 825 PGACAGCGE 833
                 568****96 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   8.4e-13   6.6e-10       1      81 [.     270     352 ..     270     370 .. 0.88

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 8.4e-13
                 -SEEEEE-STHHHHHHHHHHHHHHTT--EEEEEES--BS--HHHHHH.HSTT-SEEEEEE-S--TT-G.-HHHHHHHHHTGGG CS
     PFOR_II   1 AevvivamGsvagtaksavdelReegikvGllrlrtlrPFPeeelke.llkkvkkvvvldrnisfgse.Gqlveevkaalkks 81 
                 A +v+v+mGs+++t+ ++vd+l   g+k+G++++r++ PF ++ + + + + +k + vldr  + gs   +l+  v++a+ ++
  CCG93208.1 270 ATMVVVVMGSASETLCRVVDSLNSLGYKTGVVKVRLFSPFDQQSFLKcFPRTTKIIGVLDRCKEPGSVgEPLFVQVASAILNN 352
                 679***************************************997661567788889**********9779999999998777 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   3.6   1.8e-12   1.4e-09       2      66 ..     697     765 ..     696     765 .. 0.74

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.8e-12
     Fer4_16   2 CgtCgkCaevCPtnaikek.kekei..earecisyntaekkdlaedeekck.kqeaitgCdiCqdvCPa 66 
                 C++CgkC+ +CP++++++k  ++++  +a+e + +++a   ++     +   ++ ++tgC+iC+dvCPa
  CCG93208.1 697 CIQCGKCVIACPHAVLRAKvYDPTFveKAPEGFLKADARYPEWDGLLYTIAvSEADCTGCGICVDVCPA 765
                 *****************9953333311444444447777777777777666567999***********6 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   4.7   5.8e-12   4.5e-09       2      50 ..     697     765 ..     696     766 .. 0.68

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 5.8e-12
      Fer4_7   2 CigCgaCvaaCpvkaield...eeenek..........gtekv.......eidpekClgCgaCvavCPt 50 
                 Ci+Cg+Cv aCp+ +++ +   +  +ek          + +++       ++++ +C+gCg Cv+vCP+
  CCG93208.1 697 CIQCGKCVIACPHAVLRAKvydPTFVEKapegflkadaRYPEWdgllytiAVSEADCTGCGICVDVCPA 765
                 ***************9977444222232334344333322222555554499999*************5 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   1.4   8.9e-09   6.9e-06       3      23 ..     692     712 ..     690     713 .. 0.88
   2 !   20.8   5.8   3.1e-07   0.00024       3      19 ..     748     764 ..     746     765 .. 0.89
   3 ?   -1.0   0.4       2.4   1.9e+03       5      12 ..     825     832 ..     824     833 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 8.9e-09
                 EETTTSSS-THHHHHSTTTEE CS
        Fer4   3 ideekCigCGaCvevCPvgAI 23 
                 + +++Ci CG+Cv +CP+ ++
  CCG93208.1 692 WEPSLCIQCGKCVIACPHAVL 712
                 789**************9876 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 3.1e-07
                 EETTTSSS-THHHHHST CS
        Fer4   3 ideekCigCGaCvevCP 19 
                 + e +C+gCG+Cv+vCP
  CCG93208.1 748 VSEADCTGCGICVDVCP 764
                 78999************ PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2.4
                 TTTSSS-T CS
        Fer4   5 eekCigCG 12 
                 +  C gCG
  CCG93208.1 825 PGACAGCG 832
                 578****9 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   2.2   1.1e-06   0.00084       2      22 .]     689     709 ..     688     709 .. 0.90
   2 !   19.9   3.8   6.9e-07   0.00054       5      22 .]     748     765 ..     744     765 .. 0.85
   3 ?   -0.5   0.1       2.2   1.7e+03       7      14 ..     825     832 ..     819     834 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.1e-06
      Fer4_2   2 pvvvdtdrCigCgaCvsaCPa 22 
                 ++  ++  Ci+Cg+Cv aCP+
  CCG93208.1 689 VPLWEPSLCIQCGKCVIACPH 709
                 57789999************7 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 6.9e-07
      Fer4_2   5 vdtdrCigCgaCvsaCPa 22 
                 v ++ C+gCg+Cv++CPa
  CCG93208.1 748 VSEADCTGCGICVDVCPA 765
                 55677************8 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.2
      Fer4_2   7 tdrCigCg 14 
                 + +C gCg
  CCG93208.1 825 PGACAGCG 832
                 568****8 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   4.2e-05     0.033      44      59 ..     695     710 ..     669     711 .. 0.82
   2 !   16.6   0.2   1.1e-05    0.0087       2      23 ..     753     774 ..     752     833 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.2e-05
     Fer4_17  44 slCieCgeCerkCPqg 59 
                 slCi+Cg+C+ +CP+ 
  CCG93208.1 695 SLCIQCGKCVIACPHA 710
                 79************86 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.1e-05
     Fer4_17   2 CiqCgyClpeCpsyeaydnepk 23 
                 C++Cg C+++Cp + +y+  +k
  CCG93208.1 753 CTGCGICVDVCPAFDKYSPGKK 774
                 ***************9876444 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4  10.5   1.6e-09   1.3e-06       5      53 ..     694     765 ..     691     769 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.6e-09
     Fer4_21   5 edkCigCgkCliaCedtshqaieidaktvl.......................kvvedeCvGCnlCssvCPv 53 
                 ++ Ci+CgkC+iaC+ +   a  +d+  v                        +v e +C+GC +C++vCP 
  CCG93208.1 694 PSLCIQCGKCVIACPHAVLRAKVYDPTFVEkapegflkadarypewdgllytiAVSEADCTGCGICVDVCPA 765
                 578************98888875554432233344445555666777777766889***************6 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3   2.5e-06     0.002       5      23 ..     693     711 ..     690     734 .. 0.75
   2 !   17.5   0.3   4.3e-06    0.0033       5      21 ..     749     765 ..     745     792 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.5e-06
     Fer4_10   5 dddtCirCgkCvkaCPadl 23 
                 +++ Ci+CgkCv aCP  +
  CCG93208.1 693 EPSLCIQCGKCVIACPHAV 711
                 5789************954 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 4.3e-06
     Fer4_10   5 dddtCirCgkCvkaCPa 21 
                  +  C++Cg Cv++CPa
  CCG93208.1 749 SEADCTGCGICVDVCPA 765
                 5678************* PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.3     7e-06    0.0055      28      49 ..     689     710 ..     674     712 .. 0.68
   2 !   26.5   9.0     7e-09   5.4e-06       2      48 ..     697     765 ..     696     769 .. 0.92
   3 !   10.6   4.5   0.00061      0.48       2      15 ..     753     766 ..     752     833 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7e-06
      Fer4_9  28 lraaseeaCigCgaCveaCpkg 49 
                 +  ++ + Ci+Cg+Cv aCp+ 
  CCG93208.1 689 VPLWEPSLCIQCGKCVIACPHA 710
                 33344489************86 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 7e-09
      Fer4_9   2 CtgCgaCveaCpagvvvedaaerkarlraase......................eaCigCgaCveaCpk 48 
                 C++Cg+Cv aCp+ v + +    +   +a +                        +C+gCg Cv++Cp 
  CCG93208.1 697 CIQCGKCVIACPHAVLRAKVYDPTFVEKAPEGflkadarypewdgllytiavseADCTGCGICVDVCPA 765
                 ****************999988888877766699********************99***********95 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00061
      Fer4_9   2 CtgCgaCveaCpag 15 
                 CtgCg Cv++Cpa 
  CCG93208.1 753 CTGCGICVDVCPAF 766
                 88888888888753 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.3   3.9e-06     0.003       3      15 ..     696     708 ..     694     721 .. 0.88
   2 !   14.4   1.9   5.2e-05      0.04       4      15 ..     753     764 ..     748     774 .. 0.91
   3 ?   -1.9   0.3       8.5   6.6e+03       3       8 ..     827     832 ..     825     833 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.9e-06
      Fer4_4   3 rCigCgsCvaaCP 15 
                  Ci+Cg+Cv+aCP
  CCG93208.1 696 LCIQCGKCVIACP 708
                 6***********9 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 5.2e-05
      Fer4_4   4 CigCgsCvaaCP 15 
                 C+gCg Cv++CP
  CCG93208.1 753 CTGCGICVDVCP 764
                 ************ PP

  == domain 3  score: -1.9 bits;  conditional E-value: 8.5
      Fer4_4   3 rCigCg 8  
                  C gCg
  CCG93208.1 827 ACAGCG 832
                 69***8 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     3e-07   0.00024      12      78 ..     272     339 ..     265     357 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3e-07
                      EEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTS.HHH CS
  Transketolase_C  12 vtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgG.igs 78 
                      +++v +Gs  e+  ++++ L++ g+++ Vv +r ++p+D++ +l++  +t +++ v + +k+ G +g+
       CCG93208.1 272 MVVVVMGSASETLCRVVDSLNSLGYKTGVVKVRLFSPFDQQSFLKCFPRTTKIIGVLDRCKEPGsVGE 339
                      67899*************************************************99999887541555 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2     0.046        36       6      22 ..     695     711 ..     692     733 .. 0.82
   2 !   15.0   0.2   3.9e-05      0.03       3      35 ..     748     780 ..     746     810 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.046
     Fer4_15   6 daCigcglCvaeapevf 22 
                 ++Ci cg Cv ++p  +
  CCG93208.1 695 SLCIQCGKCVIACPHAV 711
                 78***********8765 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3.9e-05
     Fer4_15   3 vDrdaCigcglCvaeapevfeldedglasvl.ld 35 
                 v +  C+gcg Cv+++p  f + + g++ ++ ++
  CCG93208.1 748 VSEADCTGCGICVDVCP-AFDKYSPGKKAIHmIS 780
                 56678************.8888888998888533 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   7.5   2.8e-06    0.0022       5      63 ..     697     765 ..     693     767 .. 0.62
   2 !   11.0   2.6   0.00058      0.45       4      20 ..     752     768 ..     749     832 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.8e-06
      Fer4_8   5 CieCgaCqsaCp..vlrrtkkhlldargeaae........dvqeeqvlee........eealwsCttcgaCtevCpv 63 
                 Ci+Cg C  aCp  vlr++  ++   ++  ++                 e        + +   Ct+cg C++vCp 
  CCG93208.1 697 CIQCGKCVIACPhaVLRAKVYDPTFVEKAPEGflkadaryP--------EwdgllytiAVSEADCTGCGICVDVCPA 765
                 ***********976333333444433333333443444320........122344455666789************6 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00058
      Fer4_8   4 kCieCgaCqsaCpvlrr 20 
                 +C++Cg C + Cp++ +
  CCG93208.1 752 DCTGCGICVDVCPAFDK 768
                 69999999999997665 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   2.0    0.0063       4.9       5      18 ..     696     709 ..     693     714 .. 0.90
   2 !   13.9   0.4   7.5e-05     0.058       4      29 ..     751     776 ..     748     791 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0063
     Fer4_13   5 tCiacgaCvelaPd 18 
                  Ci cg+Cv ++P+
  CCG93208.1 696 LCIQCGKCVIACPH 709
                 6************6 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 7.5e-05
     Fer4_13   4 dtCiacgaCvelaPdvFeeddeggas 29 
                   C++cg+Cv+++P + ++ + ++a 
  CCG93208.1 751 ADCTGCGICVDVCPAFDKYSPGKKAI 776
                 67*************99999876654 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.6     0.011       8.9      61      74 ..     697     710 ..     689     722 .. 0.76
   2 !   12.2   0.5   0.00021      0.16      56      73 ..     748     765 ..     740     772 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.011
     Fer4_18  61 cidcescvkvcPtg 74 
                 ci+c++cv  cP  
  CCG93208.1 697 CIQCGKCVIACPHA 710
                 77777777777755 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00021
     Fer4_18  56 kgagdcidcescvkvcPt 73 
                  +++dc+ c+ cv+vcP 
  CCG93208.1 748 VSEADCTGCGICVDVCPA 765
                 5789*************6 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.6    0.0061       4.8       1      12 [.     697     708 ..     697     711 .. 0.95
   2 ?   11.9   4.1   0.00046      0.36       1      12 [.     753     764 ..     753     767 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0061
      Fer4_3   1 CtgCgaCvevCP 12 
                 C++Cg Cv +CP
  CCG93208.1 697 CIQCGKCVIACP 708
                 ************ PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00046
      Fer4_3   1 CtgCgaCvevCP 12 
                 CtgCg Cv+vCP
  CCG93208.1 753 CTGCGICVDVCP 764
                 ************ PP

>> MCR_beta  Methyl-coenzyme M reductase beta subunit, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00018      0.14      27      74 ..     882     934 ..     870     938 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
    MCR_beta  27 ssileqtavfemG.....davGaferahllglayqGlnannlvydlvkengke 74 
                 +s++e  a f +G     da+G++ r+ l+ +   Gl  +nlv +l++ + k+
  CCG93208.1 882 NSLFEDNAEFGLGfrlglDAIGQWARKFLVQFGESGLVDKNLVQELINVEEKT 934
                 6899999999888777799***************************9988775 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0063       4.9       2      94 ..     697     709 ..     679     721 .. 0.77
   2 ?    9.1   0.7    0.0029       2.3      78      94 ..     749     765 ..     741     767 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0063
     Fer4_22   2 ClsCgaCtlvCptCsCfdvedetkeeskegervrvwdsClleeftkvaggenvrkekkerlrqrllhklsefkekfgesgCvGCgRCieacpv 94 
                 C++Cg+C ++Cp                                                                                +
  CCG93208.1 697 CIQCGKCVIACP--------------------------------------------------------------------------------H 709
                 566666666665................................................................................3 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0029
     Fer4_22  78 gesgCvGCgRCieacpv 94 
                 +e  C+GCg C+++cp+
  CCG93208.1 749 SEADCTGCGICVDVCPA 765
                 6788***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.45
# Mc/sec: 7897.88
//
Query:       CCG93209.1  [L=382]
Description: Ferredoxin [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-32  111.4  13.8    4.6e-32  110.7   9.2    2.3  2  Fer4_22   4Fe-4S dicluster domain
    7.8e-08   32.7   3.8     0.0098   16.4   0.1    2.6  2  Fer4_17   4Fe-4S dicluster domain
    4.1e-07   30.5   5.9     0.0082   16.7   0.2    2.5  2  Fer4_7    4Fe-4S dicluster domain
    9.3e-07   28.9  10.2     0.0025   17.9   0.4    2.4  2  Fer4_10   4Fe-4S dicluster domain
    3.1e-06   27.0  11.8     0.0077   16.3   1.6    2.6  2  Fer4_2    4Fe-4S binding domain
    6.9e-06   26.4   9.6    5.9e-05   23.4   7.5    2.4  2  Fer4_8    4Fe-4S dicluster domain
    1.4e-05   25.1   7.9      0.012   15.7   0.5    2.6  2  Fer4_21   4Fe-4S dicluster domain
    7.3e-05   22.9   8.4     0.0016   18.6   0.2    2.5  2  Fer4_18   4Fe-4S dicluster domain
    0.00036   20.6  12.8       0.03   14.5  13.1    2.5  3  Fer4_9    4Fe-4S dicluster domain
     0.0019   19.1  13.4      0.075   14.0   1.1    2.8  2  Fer4_16   4Fe-4S double cluster binding domain
     0.0036   17.0  14.0      0.092   12.6   4.2    2.4  2  Fer4      4Fe-4S binding domain
     0.0095   16.0  18.2       0.31   11.2   4.2    2.4  2  Fer4_6    4Fe-4S binding domain
     0.0097   15.7   6.4       0.46   10.3   1.6    2.4  2  Fer4_20   Dihydroprymidine dehydrogenase domain II, 4Fe-4S cl
  ------ inclusion threshold ------
      0.028   15.4   4.2      0.028   15.4   4.2    2.7  2  Fer4_3    4Fe-4S binding domain
      0.065   13.8   0.7       0.14   12.8   0.7    1.5  1  ATP-cone  ATP cone domain


Domain annotation for each model (and alignments):
>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.18   2.1e+02       7      21 ..     163     177 ..     159     193 .. 0.85
   2 !  110.7   9.2   3.9e-35   4.6e-32       1      96 []     270     363 ..     270     363 .. 0.97

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.18
     Fer4_22   7 aCtlvCptCsCfdve 21 
                 +C++  +tC+C ++ 
  CCG93209.1 163 NCAYPSATCFCSSMG 177
                 79999******9875 PP

  == domain 2  score: 110.7 bits;  conditional E-value: 3.9e-35
     Fer4_22   1 rClsCgaCtlvCptCsCfdvedetkeeskegervrvwdsClleeftkvaggenvrkekkerlrqrllhklsefkekfgesgCvGCgRCieacpvki 96 
                 rClsC++Ct+vCptC+C ++ d  k +++e er+ vwdsC++ +ft++ +g +vrk+  +r+rq+++hkl+++ ++fg+sgCvGCgRCi++cpv+i
  CCG93209.1 270 RCLSCANCTFVCPTCFCSTLIDIPK-KAQEIERWMVWDSCFTLNFTHTPAG-SVRKSVLSRYRQWMTHKLASWIDQFGTSGCVGCGRCITWCPVGI 363
                 7***********************6.679*********************9.9****************************************987 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.2   9.3e-06     0.011      18      58 ..     235     283 ..     226     285 .. 0.72
   2 !   16.4   0.1   8.2e-06    0.0098      22      61 .]     322     364 ..     293     364 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.3e-06
     Fer4_17  18 ydnepkkllraakl........glleeaekeekaslCieCgeCerkCPq 58 
                 ++  +k++ r+++         + l+    ee a++C++C +C+ +CP 
  CCG93209.1 235 IQHAEKQIFRRIETqgikellyNNLQHPRWEEIAQRCLSCANCTFVCPT 283
                 555678888888885554444444444455589***************5 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 8.2e-06
     Fer4_17  22 pkkllraakl...glleeaekeekaslCieCgeCerkCPqgld 61 
                 +k++l +++    ++l   +++   s C++Cg+C + CP g+d
  CCG93209.1 322 RKSVLSRYRQwmtHKLASWIDQFGTSGCVGCGRCITWCPVGID 364
                 4443333322243556666677899**************9987 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.3   1.2e-05     0.014      27      50 ..     260     283 ..     162     285 .. 0.79
   2 !   16.7   0.2   6.8e-06    0.0082      33      52 .]     344     363 ..     300     363 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
      Fer4_7  27 gtekveidpekClgCgaCvavCPt 50 
                 + +++e  +++Cl+C +C  vCPt
  CCG93209.1 260 QHPRWEEIAQRCLSCANCTFVCPT 283
                 348889999**************8 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 6.8e-06
      Fer4_7  33 idpekClgCgaCvavCPtga 52 
                 +  + C+gCg+C++ CP+g+
  CCG93209.1 344 FGTSGCVGCGRCITWCPVGI 363
                 55677999999999999986 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   3.9   2.4e-05     0.029       5      24 ..     267     288 ..     263     316 .. 0.72
   2 !   17.9   0.4   2.1e-06    0.0025       7      35 ..     347     369 ..     341     380 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.4e-05
     Fer4_10   5 dddtCirCgkCvkaCPadl..t 24 
                  +++C+ C++C+ +CP+++  t
  CCG93209.1 267 IAQRCLSCANCTFVCPTCFcsT 288
                 5789*************77541 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 2.1e-06
     Fer4_10   7 dtCirCgkCvkaCPadltsvgakgeasee 35 
                 + C++Cg+C + CP+ +      ++++e 
  CCG93209.1 347 SGCVGCGRCITWCPVGI------DITEEA 369
                 67*************44......333333 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   3.0   1.2e-05     0.014       7      22 .]     268     283 ..     262     283 .. 0.89
   2 !   16.3   1.6   6.4e-06    0.0077       4      21 ..     343     360 ..     340     361 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
      Fer4_2   7 tdrCigCgaCvsaCPa 22 
                 ++rC++C  C+ +CP+
  CCG93209.1 268 AQRCLSCANCTFVCPT 283
                 689************7 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 6.4e-06
      Fer4_2   4 vvdtdrCigCgaCvsaCP 21 
                 ++ t  C+gCg C++ CP
  CCG93209.1 343 QFGTSGCVGCGRCITWCP 360
                 677888************ PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   4.1   5.5e-05     0.066      44      63 ..     238     283 ..     162     285 .. 0.73
   2 !   23.4   7.5   4.9e-08   5.9e-05       3      65 .]     269     363 ..     268     363 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.5e-05
      Fer4_8  44 e..........................eealwsCttcgaCtevCpv 63 
                 +                          ee++++C++c +Ct vCp+
  CCG93209.1 238 AekqifrrietqgikellynnlqhprwEEIAQRCLSCANCTFVCPT 283
                 1334444455555556777777888889*****************6 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 4.9e-08
      Fer4_8   3 ekCieCgaCqsaCpvlrr.......................tkkhlldargeaae.....dvqeeqvlee............eealwsCttcgaCtevC 61 
                 ++C  C  C+  Cp++ +                       t ++ +++ g + +     +                     + +   C++cg+C + C
  CCG93209.1 269 QRCLSCANCTFVCPTCFCstlidipkkaqeierwmvwdscfTLNFTHTPAGSVRKsvlsrY--------RqwmthklaswidQFGTSGCVGCGRCITWC 359
                 79************88884455555555555555555555444555555555555444331........034556677888899*************** PP

      Fer4_8  62 pvgi 65 
                 pvgi
  CCG93209.1 360 PVGI 363
                 **97 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   1.7   0.00012      0.14      35      54 ..     265     284 ..     247     299 .. 0.81
   2 !   15.7   0.5     1e-05     0.012      38      53 ..     346     361 ..     333     367 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
     Fer4_21  35 kvvedeCvGCnlCssvCPve 54 
                 + ++++C  C+ C+ vCP+ 
  CCG93209.1 265 EEIAQRCLSCANCTFVCPTC 284
                 55778999999999999974 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1e-05
     Fer4_21  38 edeCvGCnlCssvCPv 53 
                 ++ CvGC  C++ CPv
  CCG93209.1 346 TSGCVGCGRCITWCPV 361
                 578************9 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   3.4     0.007       8.4      53      74 ..     263     284 ..     230     312 .. 0.76
   2 !   18.6   0.2   1.3e-06    0.0016      50      79 ..     338     367 ..     320     373 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.007
     Fer4_18  53 rkekgagdcidcescvkvcPtg 74 
                 r e+ a  c++c  c  vcPt 
  CCG93209.1 263 RWEEIAQRCLSCANCTFVCPTC 284
                 45666788************85 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.3e-06
     Fer4_18  50 keerkekgagdcidcescvkvcPtgidirk 79 
                      + g++ c+ c+ c++ cP+gidi +
  CCG93209.1 338 ASWIDQFGTSGCVGCGRCITWCPVGIDITE 367
                 45556778999*****************86 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   5.1    0.0011       1.3      33      48 ..     256     283 ..     224     286 .. 0.71
   2 !   14.5  13.1   2.5e-05      0.03       1      49 [.     270     362 ..     270     365 .. 0.92
   3 !   13.7   1.3   4.5e-05     0.053       2      24 ..     349     371 ..     348     377 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0011
      Fer4_9  33 e............eaCigCgaCveaCpk 48 
                 +            ++C++C  C+ +Cp+
  CCG93209.1 256 YnnlqhprweeiaQRCLSCANCTFVCPT 283
                 044445555677789***********97 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.5e-05
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase............................................eaCigCgaCveaCpkg 49 
                 +C +C +C+ +Cp++ ++      k +++++++                                            + C+gCg+C+  Cp g
  CCG93209.1 270 RCLSCANCTFVCPTCFCSTLIDIPKKAQEIERWmvwdscftlnfthtpagsvrksvlsryrqwmthklaswidqfgtSGCVGCGRCITWCPVG 362
                 5***********99999777777777777888889999***************************************99************98 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 4.5e-05
      Fer4_9   2 CtgCgaCveaCpagvvvedaaer 24 
                 C+gCg+C++ Cp g+ + ++ae 
  CCG93209.1 349 CVGCGRCITWCPVGIDITEEAEI 371
                 89999999999888877777665 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   5.2    0.0019       2.3      50      65 ..     267     282 ..     212     284 .. 0.67
   2 !   14.0   1.1   6.2e-05     0.075       2      20 ..     349     368 ..     348     379 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0019
     Fer4_16  50 kqeaitgCdiCqdvCP 65 
                 +++++  C++C+ vCP
  CCG93209.1 267 IAQRCLSCANCTFVCP 282
                 3477889999999998 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 6.2e-05
     Fer4_16   2 CgtCgkCaevCPtna.ikek 20 
                 C++Cg+C+  CP++  i+e+
  CCG93209.1 349 CVGCGRCITWCPVGIdITEE 368
                 *************9756655 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   2.2   0.00076       0.9       7      20 ..     270     283 ..     266     283 .. 0.91
   2 !   12.6   4.2   7.7e-05     0.092       8      21 ..     349     362 ..     344     363 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00076
                 TSSS-THHHHHSTT CS
        Fer4   7 kCigCGaCvevCPv 20 
                 +C  C +C  vCP+
  CCG93209.1 270 RCLSCANCTFVCPT 283
                 8************7 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 7.7e-05
                 SSS-THHHHHSTTT CS
        Fer4   8 CigCGaCvevCPvg 21 
                 C+gCG+C+  CPvg
  CCG93209.1 349 CVGCGRCITWCPVG 362
                 ************98 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   6.1   0.00064      0.77       6      21 ..     268     283 ..     267     284 .. 0.92
   2 !   11.2   4.2   0.00026      0.31       9      22 ..     349     362 ..     349     365 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00064
      Fer4_6   6 pdkCigCgdCvrvCPe 21 
                 +++C++C +C+ vCP+
  CCG93209.1 268 AQRCLSCANCTFVCPT 283
                 589************7 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00026
      Fer4_6   9 CigCgdCvrvCPeg 22 
                 C+gCg+C++ CP g
  CCG93209.1 349 CVGCGRCITWCPVG 362
                 ************97 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   1.6   0.00038      0.46      16      47 ..     263     297 ..     249     316 .. 0.67
   2 !    7.5   0.2    0.0028       3.4      23      47 ..     348     370 ..     337     379 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00038
                 HHHHHHTT----TT-HHHHCST.....T---HHHHHH CS
     Fer4_20  16 ealeeAsRClqCkkapcvkgCP.....veidipefik 47 
                 +  e A+RCl+C+  +c+  CP     + idip+  +
  CCG93209.1 263 RWEEIAQRCLSCA--NCTFVCPtcfcsTLIDIPKKAQ 297
                 555679******5..5555555110005666666555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0028
                 T----TT-HHHHCSTT---HHHHHH CS
     Fer4_20  23 RClqCkkapcvkgCPveidipefik 47 
                  C+ C    c++ CPv idi e  +
  CCG93209.1 348 GCVGC--GRCITWCPVGIDITEEAE 370
                 69999..78***********87555 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   9.6       4.8   5.8e+03       1      13 [.     271     283 ..     271     284 .. 0.94
   2 ?   15.4   4.2   2.3e-05     0.028       1      15 []     349     363 ..     349     363 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 4.8
      Fer4_3   1 CtgCgaCvevCPv 13 
                 C+ C  C  vCP+
  CCG93209.1 271 CLSCANCTFVCPT 283
                 999*9*******6 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.3e-05
      Fer4_3   1 CtgCgaCvevCPvgA 15 
                 C+gCg+C  +CPvg+
  CCG93209.1 349 CVGCGRCITWCPVGI 363
                 *************95 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.7   0.00011      0.14      17      78 ..     213     271 ..     210     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHHHHHHHHHHSS-HHHHHHHH CS
    ATP-cone  17 kIkraiekAcegseeeideiaeeveaevrkrlrdgisteeIqdlvektliehpdyavaaayi 78 
                  I++ iek     ee++++  +ev+++++k++ + i+t+ I +l+ ++l +hp ++ +a + 
  CCG93209.1 213 EIIAQIEKTDAT-EEDLKKE-NEVIQHAEKQIFRRIETQGIKELLYNNL-QHPRWEEIAQRC 271
                 567777777444.4444443.6999************************.7****9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1036  (0.0577835); expected 358.6 (0.02)
Passed bias filter:                      669  (0.0373138); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.36
# Mc/sec: 3172.63
//
Query:       CCG93210.1  [L=153]
Description: Transcriptional regulator, Crp family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-07   30.7   0.0    3.3e-07   30.3   0.0    1.2  1  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.8e-11   3.3e-07       3      89 .]      33     119 ..      31     119 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.8e-11
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH- CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqqd 89 
                   sfka +++f +G++ad++++++ G v++ ++ ++   vv+ ++g G ++G   l     ++ ++++++++  +++++  +++++++d
    CCG93210.1  33 SFKAQSYLFVEGQKADKFFLLQNGLVALETYFPERGIVVIQTVGIGHVVGWSWLCPPFLWHFSARVIDPVNAFVFDATCLKQMMEED 119
                   89**************************999999999**************99997677***********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1031.41
//
Query:       CCG93211.1  [L=281]
Description: 2-polyprenylphenol hydroxylase or related flavodoxin oxidoreductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-13   49.7   0.0    1.9e-12   47.8   0.0    1.9  2  NAD_binding_1    Oxidoreductase NAD-binding domain
    1.4e-10   40.8   0.6    2.5e-10   40.0   0.6    1.4  1  DHODB_Fe-S_bind  Iron-sulfur cluster binding domain of dihydr
    0.00049   20.3   0.2        0.1   12.7   0.1    2.3  2  NAD_binding_6    Ferric reductase NAD binding domain
  ------ inclusion threshold ------
      0.016   15.5   0.0      0.031   14.6   0.0    1.5  1  FAD_binding_6    Oxidoreductase FAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   4.3e-16   1.9e-12       1     107 [.     119     221 ..     119     223 .. 0.89
   2 ?   -0.3   0.0      0.37   1.6e+03      73     101 ..     222     253 ..     220     258 .. 0.76

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 4.3e-16
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEE.ESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvav.vsreeagweggkgrvqdalleellslkkeethv 95 
                    ++agG G+ P++ +l  +++++   ++++l+yG+rt++dll+   l +l +   +++  ++v v+r++++w+g  g+v++ +   + +  ++et+v
     CCG93211.1 119 LVAGGIGLPPLLPILYMAQKNKGYFKNLILLYGARTKDDLLFMPLLHKLTA---DQIITLHVsVDRPSREWKGHVGTVTALIPSISFD--NKETFV 209
                    79******************99999************************43...3455666667***************999665555..****** PP

                    EEECSHHHHHHH CS
  NAD_binding_1  96 yvCGppgMikav 107
                    + CGp+ M++++
     CCG93211.1 210 FSCGPEIMMRFM 221
                    *********987 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.37
                    EESSHHHHHHHHHHH...HSSTTEEEEEECSH CS
  NAD_binding_1  73 gkgrvqdalleells...lkkeethvyvCGpp 101
                     + ++q++l +e++      + ++ + +CG  
     CCG93211.1 222 ARAFIQKHLPREHIFfsmERNMKCAIGICGHC 253
                    56789999999999887666777888899965 PP

>> DHODB_Fe-S_bind  Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.6   5.5e-14   2.5e-10       1      41 [.     240     272 ..     240     273 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 5.5e-14
                      ----SSSSSSS-TTEEEETTCTT.CEEETTTT-CEEECCCB CS
  DHODB_Fe-S_bind   1 eerMaCGvGaClgCvvktkggdggeykrvCkdGPvFdadev 41 
                      e+ M+C++G+C++C +           ++CkdGPvF+++++
       CCG93211.1 240 ERNMKCAIGICGHCQLSP--------FFICKDGPVFPYEQI 272
                      899***************........8************98 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   2.3e-05       0.1       3      26 ..     116     139 ..     114     169 .. 0.84
   2 !    5.2   0.0    0.0049        22     133     149 ..     203     219 ..     193     225 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
                    xxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   3 nvllvagGiGitpfisilkdllkk 26 
                    +++lvagGiG++p+++il    k+
     CCG93211.1 116 TLILVAGGIGLPPLLPILYMAQKN 139
                    799**************9766555 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0049
                    xxxxxxxxxxxxxxxxx RF
  NAD_binding_6 133 knssvgvfvCGppklvk 149
                     n+++ vf+CGp+++++
     CCG93211.1 203 DNKETFVFSCGPEIMMR 219
                    578999********986 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     7e-06     0.031      27      96 ..      41     105 ..      16     107 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7e-06
                    -----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE-S CS
  FAD_binding_6  27 klglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtleikGPlGk 96 
                     + +++Gq+ ++++   ge    + +++s++++   l   ++++  G++++aL++l+ +d + i+GP+G+
     CCG93211.1  41 PFYFLPGQFNMISAIGGGE---AAISIASDPTNPHILIHTIRIV--GNVTKALSKLEKNDFVLIRGPYGR 105
                    3567788888888887777...4557777776665555556665..**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1959.90
//
Query:       CCG93212.1  [L=253]
Description: Coenzyme F420-reducing hydrogenase, gamma subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-24   84.7   0.0    6.1e-24   84.3   0.0    1.2  1  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
  ------ inclusion threshold ------
        0.1   12.5   9.3       0.86    9.5   8.4    2.4  2  zf-RING_6    zf-RING of BARD1-type protein


Domain annotation for each model (and alignments):
>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   6.8e-28   6.1e-24       1     130 [.      12     148 ..      12     149 .. 0.87

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 6.8e-28
                  -SHHHHHHT-TTTTHHHHHHTEEEEEETTT-S--HHHHHHTHTTTSEEEEEESBE...EEEHHHHHHHHGGGSSEEEEESHHHHH-TGGGSTT-TEE. CS
  Oxidored_q6   1 CtGcsisllaleedlldllelielryhetlladskeeeieakekeadvlvveGavtrkpkealellkelaekakaviavGtCAafGGipaaannpsv. 97 
                  C+Gc++sll+le++ll++ + + + y   l a+s+     ++e   d+ +veG++  +++ea++++ e+++++ ++i +G+CA+ GGi+a++n  s  
   CCG93212.1  12 CDGCQLSLLDLEDELLEIDKNFVISY--FLEASSR-----SPEPPFDISLVEGSI--TTEEAKRKIIEIRNHSSILITIGACATAGGIQALRNFASLq 100
                  ******************76566777..4545555.....7888***********..99*********************************977445 PP

                  ...............-HHHHHHHC.S-E.EEE-SSS--HHHHHHHHHH CS
  Oxidored_q6  98 ...............geevgellevvpvdinipGCPphpeailetlla 130
                                 +  + +++++v+vd++++GCP++++++l++l +
   CCG93212.1 101 tvkervypqpelidvLPTSLPISQYVQVDYELQGCPINKQQLLSVLYS 148
                  6788888887776653667899999******************99975 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   8.4   9.6e-05      0.86       5      49 ..     165     208 ..     162     212 .. 0.89
   2 ?    0.9   0.0     0.046   4.2e+02      19      39 ..     228     246 ..     219     248 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 9.6e-05
   zf-RING_6   5 ekllrcsrctdilrepvclggcehifcsncisdcfgsgcpvcytp 49 
                 e  +r + c  +  + +clg   h  c   i   fg gc  cy p
  CCG93212.1 165 ECKMRGTPCVMVTSKTLCLGPVTHAGCG-AICPSFGRGCYGCYGP 208
                 66689999******************97.58899*********99 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.046
   zf-RING_6  19 epvclggcehifcsncisdcf 39 
                 ep  l    h f  nci+d f
  CCG93212.1 228 EPTALKQAFHTF--NCIADGF 246
                 666676666766..9****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1714.67
//
Query:       CCG93213.1  [L=437]
Description: Coenzyme F420-reducing hydrogenase, alpha subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-26   91.8   0.1    2.9e-13   49.6   0.0    3.5  4  NiFeSe_Hases  Nickel-dependent hydrogenase
  ------ inclusion threshold ------
      0.037   13.5   0.0      0.062   12.8   0.0    1.2  1  TBSV_P22      TBSV core protein P21/P22


Domain annotation for each model (and alignments):
>> NiFeSe_Hases  Nickel-dependent hydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   3.2e-17   2.9e-13       1      84 [.      51     134 ..      51     157 .. 0.85
   2 ?    1.5   0.0     0.012   1.1e+02     156     188 ..     148     180 ..     143     199 .. 0.82
   3 ?   -1.9   0.0      0.13   1.2e+03     257     289 ..     229     262 ..     212     275 .. 0.81
   4 !   36.8   0.1   2.5e-13   2.2e-09     420     505 .]     348     430 ..     242     430 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 3.2e-17
                   --HHHHTTTS-GGGHHHHHHTT-SSSTTHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTS-THGG CS
  NiFeSe_Hases   1 RGlElilkgrdprdawalvqRiCGVCttvHalasvravedAlgikipknarlirnliaaalllhdhivhFYhLhalDwvdvvsa 84 
                   R +E +l gr+ ++   +++RiCG+C+++  ++s+ a+edA++++ip+    +r l+   +++++h +h + Lha  ++   s 
    CCG93213.1  51 RFFESLLIGRNFHEPPDITSRICGICPVAYLISSIAAIEDACQVQIPEYIWNLRRLLYCGEWIESHSLHVFFLHAPGFLGYPSL 134
                   56899**********************************************************************777654333 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.012
                   HHHHHHHHTHHHHHHHSSSSS--.EBTTBESSG CS
  NiFeSe_Hases 156 aLelqrkaakivaifggknPhpqslvvGGvtca 188
                   aL++++  ++++  +gg++ hp ++ +GG  + 
    CCG93213.1 148 ALQMKKAGNTLIQKIGGREIHPVNVRIGGFYSF 180
                   799999999********************9776 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.13
                   GGEEEEEEEESTTETT.SEBEE-TTTEEEE-TTS CS
  NiFeSe_Hases 257 eslllpsGvilngdls.kveevdeekitEevkhs 289
                   +++ +++G+i  gd + +++e++++ i+E++++s
    CCG93213.1 229 KQYPIERGIICCGDSQfDAKEFEKNFIEEQTTYS 262
                   57789999999888876999999******99988 PP

  == domain 4  score: 36.8 bits;  conditional E-value: 2.5e-13
                   SEEEEEEEEEETTEEEEEEEEEET.TEEEEEEEE-HHHHHH--S-TT----HHHHHHTT-B-SSTTS-HHHHHHHHHT--BHHHHH- CS
  NiFeSe_Hases 420 keakGvglveapRGaLsHwikikd.gkienYqavvPsTWnasPrdakgqkgayEaaLigtpvadpekPleilrtihSfDPClACavH 505
                   +  +G+g+ eapRG L H  +++d g i++ ++v P+  n++  ++ + k  +E+   +  ++  +  l+  ++++ +DPC++Ca+H
    CCG93213.1 348 NPQTGYGISEAPRGLLYHKYELDDkGSIRKAKIVPPTCFNLASAED-DLKTWIETH-SEDSIE--RMTLDCEQIVRNYDPCISCATH 430
                   4469******************76269*************987654.455556654.444554..45688999*************9 PP

>> TBSV_P22  TBSV core protein P21/P22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.9e-06     0.062     124     167 ..     244     287 ..     239     300 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.9e-06
    TBSV_P22 124 vfeveelvspflegrelfsvsvrWrlglskqsyslPlskvkvly 167
                 +f+ +e+  +f e +  +s ++rW+ + s+ + + Pl++++  y
  CCG93213.1 244 QFDAKEFEKNFIEEQTTYSNALRWKATDSRSCLAGPLARYHLNY 287
                 79999*********************************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2748.90
//
Query:       CCG93214.1  [L=605]
Description: putative Pyruvate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-49  166.2   0.0    4.3e-37  127.8   0.1    2.1  2  PK         Pyruvate kinase, barrel domain
    0.00019   20.6   0.1    0.00049   19.3   0.1    1.6  2  HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   3.2e-13   2.9e-09       4      77 ..     123     197 ..     121     206 .. 0.89
   2 !  127.8   0.1   4.8e-41   4.3e-37     100     341 ..     341     584 ..     321     591 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 3.2e-13
                 SEEEEEESCC.CTSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHTTTTS-EEEEE---S-EBB--B CS
          PK   4 tkivctlGPa.sesvekleklieaGlnvvrlnfshGsheehqerienvreaekklgkkvaillDtkGpeirtgll 77 
                 t+i+ tl  + +e+++ l +l++aG+nv+r+n +h s +   + ien r+  ++lg ++ i++D+ Gp++r+  +
  CCG93214.1 123 TSIMVTLPTEaAENQKLLVDLLKAGMNVIRINCAHDSPDVWIRMIENSRRLSQELGYSCKIVMDLPGPKLRIVAI 197
                 8999999765145666789****************************************************8765 PP

  == domain 2  score: 127.8 bits;  conditional E-value: 4.8e-41
                 CTTTBBTTEEEBS-TTHHHHS-TTEEEEETTTTEEEEEEEEETTE.EEEEE.E.SS-EEE-SS-BEE-TTS---S-SS-HHHHHHHHHHHHCT-SEEEE CS
          PK 100 lkeegdeelialdyknivkdvevGktilvdDGllslkvlevdeek.eleve.v.entgvlgskkgvnlpgtkvdlpalsekDkadlrfgvkqgvdliaa 195
                 +k+eg   +++++ ++i++dv+v + i+ dDG+++ ++l+++++   +e++ + +++ +l   +g+nlp +++++ a++++D + l f + ++ d + +
  CCG93214.1 341 IKQEGMVGTLWISQPQILHDVKVDEPIWFDDGKIGGRILQCTDDGaAVEIThApSKGLKLRVDRGINLPVSDLKISAITDQDLKILSF-IGKHADAVGI 438
                 5667777889*****************************999887655544131445579999************************9.56678***** PP

                 TTE-SHHHHHHHHHHHTCCC.TTSEEEEEE-SCHHHHTHHHHH.....HHSSEEEEEHHHHHHHSTCCCHHHHHHHHHHHHHHHT--EEEESSTTGGGG CS
          PK 196 sfvrkasDvkevrevleeeg.keikiiakienqegvenldeil.....easDgimvarGDlGieipaekvllvqkklikkcnlagkpvitatqmlesmi 288
                 sf+r  sD+ ++ + l+ e+ +++ ii kie +++ enl  il     + s g+m+arGDl +e + e++  vq  ++  +++a  pvi atq+les+ 
  CCG93214.1 439 SFLRIPSDIDDLEKALNYEStQNLGIILKIETRKAFENLPLILlkamkNRSVGVMIARGDLAVECGYERLAEVQEEILWISEAAHIPVIWATQVLESLA 537
                 *************999988779****************88887322224578*********************************************** PP

                 TSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSS-HHHHHHHHHHHHHHHHHT CS
          PK 289 knPrptraevsDvanavlDGtDavmLsgetakGkyPveavkamaevaleaeka 341
                 k   p raev+D a      +++vmL     kG y veavk + ++ ++ e+ 
  CCG93214.1 538 KTGIPSRAEVTDAAM--AQRSECVMLN----KGPYIVEAVKSLVDILKRMETH 584
                 ************865..5889*****6....9*************99998876 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.52   4.6e+03     171     195 ..      12      35 ..       4      39 .. 0.77
   2 !   19.3   0.1   5.4e-08   0.00049      73     168 ..     418     513 ..     412     539 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.52
                 HHHHHHHHTTHCEEEEEEE.E-SSH CS
   HpcH_HpaI 171 dareriltaaraagiaaldtvasdi 195
                 d  ++il+a +a +   +d+v+ d 
  CCG93214.1  12 DLYNEILQAEKAHQN-FIDSVHEDN 35 
                 566889999999988.899988775 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 5.4e-08
                 HHHHHGG...HHHTTSSEEEESS--SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHH...TSTTEEEEEE-HHHHHHHTT-TTSTT CS
   HpcH_HpaI  73 likqdle...vldlgaqvvlvPkvetaeealevvsalrepekgirganketrllaqiEsaegvknaeeIa...avegldgvflGaeDlsadlgtkrspe 165
                 + +qdl+    + + a++v + ++  + ++ ++++al++ +       +++ ++  iE++++ +n++ I+     ++  gv+++  Dl+++ g++r +e
  CCG93214.1 418 ITDQDLKilsFIGKHADAVGISFLRIPSDIDDLEKALNYES------TQNLGIILKIETRKAFENLPLILlkaMKNRSVGVMIARGDLAVECGYERLAE 510
                 556777766678899999999999999999*******9999......99********************998445699*****************9887 PP

                 SHH CS
   HpcH_HpaI 166 gte 168
                  +e
  CCG93214.1 511 VQE 513
                 665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 3921.26
//
Query:       CCG93215.1  [L=42]
Description: hypothetical protein MFUM_940090 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 320.68
//
Query:       CCG93216.1  [L=54]
Description: hypothetical protein MFUM_940091 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       157  (0.00875676); expected 358.6 (0.02)
Passed bias filter:                      129  (0.00719505); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 439.83
//
Query:       CCG93217.1  [L=906]
Description: hypothetical protein MFUM_940092 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-25   88.2   0.0    1.6e-24   86.8   0.0    1.8  1  N6_Mtase         N-6 DNA Methylase
    2.1e-07   30.8   0.0    2.5e-06   27.3   0.0    2.6  2  UPF0020          Putative RNA methylase family UPF0020
    0.00025   21.0   0.0    0.00095   19.1   0.0    2.1  1  HSDR_N_2         Type I restriction enzyme R protein N termin
  ------ inclusion threshold ------
      0.023   14.5   0.0        0.1   12.4   0.0    2.2  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   3.5e-28   1.6e-24       3     261 ..     351     663 ..     349     724 .. 0.79

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 3.5e-28
    N6_Mtase   3 kdllGdvYEyllrkfaeeegksgGeffTPrevsklivell.........epksgesvyDpacGsggllvqaekvlkee....dgktkels.iyGqekne 87 
                 +d +Gd++  ++++      +s G ffT  ++s+++ + l         ++ + + ++Dp cGsg +l++a + + ++    +  +++l+ ++G + ne
  CCG93217.1 351 EDSMGDIFLDFMHSI---FRQSRGLFFTHPNISRFVCKALniekvkeslKEGDYKYILDPSCGSGTFLIEALRLIFKDepidKIRENALKiLFGIDNNE 446
                 688999988888877...4556799**************99999988776667788*****************99766688745555554169****** PP

    N6_Mtase  88 ttyrLakmNlllhgieykkvkirlgdtlekpkfe........................kdkkfdvvvaNppfnqkewkektlekderfrea.....vap 157
                 ++++L+k+N+++hg   +  +i + d+l+ p ++                        + + fd++++Nppf+ +     + ++ ++fr+        +
  CCG93217.1 447 KATALCKVNMVIHGDGSA--NIYTRDSLS-PLSNlpfpnikkesiqrfnsgstfevlkDGSGFDFIITNPPFSLD-I---KSTEYPYFRTNafvsfKNN 538
                 **************8877..688889885.444457788999**************988899***********99.3...3334444544444332444 PP

    N6_Mtase 158 ksnadla.fllhiieslkpkGraavvlangvLfrggkegkIrkalvekdlveavialpeklFyntsiptcilvlkkekae................... 236
                 +++a  + f     + l+ kGr++ v +  +Lf g +  k +  ++    + av+ lpe+ F +   + ++lv+  +++                    
  CCG93217.1 539 TTTASECfFAERWFQLLNTKGRIGAVFP-ISLFDGQEYFKAKLLFLCYFKIVAVVGLPEHAFAPHAQQRTVLVFVEKRDLgtsnklfhniinspeqfie 636
                 4444444488899***********9976.68****999999999999999**************88888888877766556777888888888888888 PP

    N6_Mtase 237 ..rkgkvlfidaseefkkkdrkknklt 261
                   ++++++f+da++  +   +k+++ t
  CCG93217.1 637 kiKDERIMFYDAKNIGYVRLKKQKTVT 663
                 888888888888888777766666554 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.53   2.4e+03     142     186 ..     352     394 ..     314     403 .. 0.68
   2 !   27.3   0.0   5.6e-10   2.5e-06      30     138 ..     402     522 ..     395     526 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC---.ESEEEEE CS
     UPF0020 142 ekLYseflrelkrvlrgggrlvlltsenkalekaleer.alrkvke 186
                 +++ + fl+ +++++r+ +r +  + ++ ++ ++++++ +++kvke
  CCG93217.1 352 DSMGDIFLDFMHSIFRQ-SRGL--FFTHPNISRFVCKAlNIEKVKE 394
                 56777899999999999.5554..4555667777777777777766 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 5.6e-10
                 S-EEETT-TTSHHHHHHH.HHHTT--TTTT----SS............HHHHHHHHHH..HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GG CS
     UPF0020  30 epllDPmCGsGtilIEaa.llganiapgllrefvle............lkaeaeeear..aelklygsDldrrvvqgareNaekagvgdliefsqadaa 113
                 + +lDP CGsGt+lIEa  l+ ++ +  ++re++l+            ++++++  ++    +++y  D+ + + +    N +k  ++ + + s+  + 
  CCG93217.1 402 KYILDPSCGSGTFLIEALrLIFKDEPIDKIRENALKilfgidnnekatALCKVNMVIHgdGSANIYTRDSLSPLSNLPFPNIKKESIQRFNSGST--FE 498
                 569**************736666666679999999988887755444434444433333333445555555555555555555555555444444..33 PP

                 G--STTS---EEEE----------H CS
     UPF0020 114 kLrlkegevdvivtnpPYGerlgsk 138
                  L+ + + +d i+tnpP+   ++s+
  CCG93217.1 499 VLK-DGSGFDFIITNPPFSLDIKST 522
                 345.5557*********98888775 PP

>> HSDR_N_2  Type I restriction enzyme R protein N terminus (HSDR_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.1e-07   0.00095       6      69 ..      59     126 ..      55     142 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.1e-07
    HSDR_N_2   6 RqklikyLveelgypkeliavekelqlgskkkraDivvykkd....kkpllivecKapsvkiseevle 69 
                 R   i +L+e++++p+++++ e++  +g  +kr+Di +   d    ++   +vecK++   is++++ 
  CCG93217.1  59 RAYAILQLMEKFKIPRDRMSKEETSLVGAPSKRVDITIDIGDvyknRQCTALVECKTSIHRISDAEFT 126
                 6778999******************************94444444469*********99999887765 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.3e-05       0.1       5      73 ..     402     489 ..     398     561 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
  Methyltransf_31   5 lrvlDlGCGtGeltfelae.........elgpkae......vvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.led......e 73 
                      +++lD+ CG+G++++e+ +         ++    +      ++GiD++e+a  l++ n   +g   ++    d  + l++l +        +
       CCG93217.1 402 KYILDPSCGSGTFLIEALRlifkdepidKI----RenalkiLFGIDNNEKATALCKVNMVIHGDGSANIYTRDSLSpLSNLpFPNikkesiQ 489
                      689***************866666444433....2556699**********99999988777766666666666666666655555555552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 5869.60
//
Query:       CCG93218.1  [L=296]
Description: dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-64  216.4   0.0    5.2e-64  216.2   0.0    1.0  1  NTP_transferase  Nucleotidyl transferase
    3.2e-08   34.1   0.0    3.4e-08   34.0   0.0    1.2  1  NTP_transf_3     MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.2   0.0   5.8e-68   5.2e-64       2     246 ..       6     241 ..       5     243 .. 0.98

  Alignments for each domain:
  == domain 1  score: 216.2 bits;  conditional E-value: 5.8e-68
                      EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTHH CS
  NTP_transferase   2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaae 95 
                      +++LaGG+G+RL+P+t +l+k+l+p+ +k ++i++++s l+ ++i++i++++t+++  l+e+ l++gs+fg++ ++a++p ++g+A+A++++++
       CCG93218.1   6 GIVLAGGTGSRLYPVTVSLSKQLLPIHDK-PMIYYPISILMLANIRDILLISTPRDIGLFERLLGDGSQFGLHFSYAVQPYPNGLAEAYLIGEK 98 
                      79***************************.**************************************************************** PP

                      HHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTSBEEEEECS-SSHSHCSEECCSEEEEETTHHHH CS
  NTP_transferase  96 lledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGvieadeegrverfvEKPkeakaselassGiYvfnsevllf 189
                      +l+ + s   +lvLg++ l+++ ++++++ka++k+    +t++ ++v+++++yGv+e+d++ +v +++EKP+++k s++a+ GiY+++  +  f
       CCG93218.1  99 FLNGRPS---CLVLGDNLLYGHSLSATLNKAAQKKH--GATIFGYHVSNPSAYGVVEFDQSMKVVSIEEKPAQPK-SSFAVPGIYFYDGRASIF 186
                      ******8...**************************..9************************************.99**************** PP

                      HHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHHHHHHH CS
  NTP_transferase 190 lakdleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldslleanekla 246
                      + ++l++++rge eitd+++k+leeg+ ++++l ++ + W D+Gt+d l++a+ +++
       CCG93218.1 187 A-SQLKPSARGELEITDLNKKYLEEGSLEVELLGRGIA-WLDTGTHDLLYDASLFVK 241
                      *.67********************************96.*************98875 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   3.8e-12   3.4e-08       1     123 [.       6     139 ..       6     249 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 3.8e-12
                   EEEEEESS-TTTT..T...THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHC......HHHHHHTTCTS-EEE-TTSS.-SHHHHHHHHHHHH.S CS
  NTP_transf_3   1 aviLAGGrSsRmg..g...dKallplggkpllervldalraagvdevvvvggde......evlaalarlgvrvvededpg.kgplaslaaalraaad 85 
                   +++LAGG +sR+   +    K+llp+++kp++ + +  l  a++++++++  ++       +l +  ++g+++ +  +p+  g +++ + + + + +
    CCG93218.1   6 GIVLAGGTGSRLYpvTvslSKQLLPIHDKPMIYYPISILMLANIRDILLISTPRdiglfeRLLGDGSQFGLHFSYAVQPYpNGLAEAYLIGEKFL-N 101
                   79**********6441448*************************99999977752443334555667889988777666449*********9999.7 PP

                   SSCEEEEETT-TT--HHHHHHHHHCHHHHTSSEEEEES CS
  NTP_transf_3  86 adavlvlacDmPlltpelverllaaaaasgadvvvpty 123
                     +  ++++D  l+  +l ++l +aa+++++++++  +
    CCG93218.1 102 GRPSCLVLGDNLLYGHSLSATLNKAAQKKHGATIFGYH 139
                   88888999***999888888888888777766655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2151.62
//
Query:       CCG93219.1  [L=362]
Description: dTDP-D-glucose-4,6-dehydratase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-87  292.5   0.0    5.1e-87  292.4   0.0    1.0  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    4.9e-60  203.0   0.0      6e-60  202.7   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    3.3e-14   52.7   0.0    4.9e-13   48.9   0.0    2.1  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    9.9e-14   51.0   0.0    1.9e-13   50.1   0.0    1.4  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    1.3e-11   44.1   0.0    3.4e-11   42.8   0.0    1.6  1  RmlD_sub_bind    RmlD substrate binding domain
    3.1e-07   29.8   0.0      4e-06   26.2   0.0    2.3  2  NAD_binding_4    Male sterility protein
      0.002   17.6   0.1       0.91    8.9   0.0    2.3  2  adh_short        short chain dehydrogenase
  ------ inclusion threshold ------
       0.18   12.1   0.0       0.27   11.5   0.0    1.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.18   11.7   0.0       0.32   10.9   0.0    1.3  1  KR               KR domain


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.4   0.0   2.6e-90   5.1e-87       1     332 []       4     328 ..       4     328 .. 0.91

  Alignments for each domain:
  == domain 1  score: 292.4 bits;  conditional E-value: 2.6e-90
                    EEETTTSHHHHHHHHHHHHCT..-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTS CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekg..yevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfek 94 
                    L+TG+aGfiGs+++++  +++    v  i+  +++ + g+ie++++    ++++n+ ++++D++D++ + ++l e ++++v+++AA+shVd+s+++
     CCG93219.1   4 LVTGGAGFIGSNFCDYCFSNEpsSIVEKIIVIDKLGYSGSIENIKEL---QNRDNFVFIQADICDQKIVSNILFEEKINAVVHFAAESHVDRSIDN 96 
                    9*****************9962156778999************9875...4578****************************************** PP

                    HHHHHHHHTHHHHHHHHHHHHC......T..TTSEEEEEEEGGGG-S-S..SSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-E CS
  GDP_Man_Dehyd  95 PeytaevnvlGtlrLLeairal......glekkvrfyqaStsEvYGkvq..evpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfn 182
                    Pe +++ nvlGt++LLe   ++      + ++k+rf+++St+EvYG+    + p++E   ++P sPY+a+K+++d++v +y+++yg++a+++  +n
     CCG93219.1  97 PEIFVQSNVLGTFKLLESSFHYvsslprKERDKFRFVHISTDEVYGSIPleDPPVKEGGVYDPSSPYSASKAASDHFVLAYHKTYGFPAMITHSSN 192
                    *****************9988855555444589**************9543889****************************************** PP

                    EESTTS-TTSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH..... CS
  GDP_Man_Dehyd 183 hesprrgetfvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkgee 278
                    +++pr+    +++ i++++++++++k e +++G++ ++Rdw +v+D++ ++w++l++++        ge++ + +   +++ el+++i+ +    +
     CCG93219.1 193 NYGPRQ---HPEKMIPHMICNALEEK-ELPVYGKGLNVRDWIYVEDHCAGIWRVLNRGR-------LGEVYHIAKGKGMTNFELVQKICSQL---D 274
                    *****7...688*********98876.8999**************************98.......79999999999999999999999864...5 PP

                    .......TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHHH CS
  GDP_Man_Dehyd 279 evgrakesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvrem 332
                    e    ++  +    ++++ +rpg++ ++++d +k+k+eLgW+++v++ee++r++
     CCG93219.1 275 ELFPRSSGRRYAELIRFVIDRPGHDLRYAIDVAKMKNELGWEAQVELEEGLRKT 328
                    5555455555566799***********************************986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.7   0.0     3e-63     6e-60       1     241 []       3     255 ..       3     255 .. 0.93

  Alignments for each domain:
  == domain 1  score: 202.7 bits;  conditional E-value: 3e-63
                 EEEETTTSHHHHHHHHHHHHCT....SE.EEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg....ye.vigldrlssasntarledl......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfi 88 
                 ilVtG++GfiGs++++++ ++     +e +i++d+l +++  +++++l       ++++d++d++ + +++ ee+++av+h+Aa+++v++s+++p+ f+
  CCG93219.1   3 ILVTGGAGFIGSNFCDYCFSNEpssiVEkIIVIDKLGYSGSIENIKELqnrdnfVFIQADICDQKIVSNILFEEKINAVVHFAAESHVDRSIDNPEIFV 101
                 8*******************999***555********************************************************************** PP

                 HHHTHHHHHHHHHHH.........HHTCTEEEEEEEGGGGTSCSSSSBSTCSTT.S----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS CS
   Epimerase  89 eknlqgtlnlleaar.........kagvkrllflsSsevYGkdaeqpkeettlt.gplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprn 177
                 ++n+ gt +lle ++         +++  r++++s++evYG  +   ++  +++ g + p+spY+a+K+a+++ v ay+++yg++a+i+  +n+yGpr 
  CCG93219.1 102 QSNVLGTFKLLESSFhyvsslprkERDKFRFVHISTDEVYGSIPL--EDPPVKEgGVYDPSSPYSASKAASDHFVLAYHKTYGFPAMITHSSNNYGPR- 197
                 ***************99999988766777************6666..33333330356****************************************. PP

                 -TTSTTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 178 gegevsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                   ++++++ip++i+++le+k e+ ++g+g ++Rd++yveD++ +i++vl++   g+ ge+y i+
  CCG93219.1 198 --QHPEKMIPHMICNALEEK-ELPVYGKGLNVRDWIYVEDHCAGIWRVLNR---GRLGEVYHIA 255
                 ..99****************.******************************...7888888875 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   2.5e-16   4.9e-13       1     118 [.       3     118 ..       3     146 .. 0.74
   2 ?    1.7   0.0     0.058   1.2e+02     178     245 ..     203     271 ..     156     301 .. 0.68

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 2.5e-16
                      EEEETTTSHHHHHHHHHHHHHB-S....EEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------H CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpk....kiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhV 90 
                      +lvtG++G iGs++++ + +++p+    kii++++  ++  +ie+   +el++   + ++v + +d+ d++ ++++l e k+++v+h AA  hV
       CCG93219.1   3 ILVTGGAGFIGSNFCDYCFSNEPSsiveKIIVIDKLGYSG-SIEN--IKELQN---RDNFVFIQADICDQKIVSNILFEEKINAVVHFAAESHV 90 
                      89******************98861111556666655442.2332..233444...33456789****************************** PP

                      HHHHHSHHHHHHHHHHHHHHHHHHHHHT CS
  Polysacc_synt_2  91 PlveenpleaiktNvlgtenvieaaiea 118
                           np   ++ Nvlgt +++e + ++
       CCG93219.1  91 DRSIDNPEIFVQSNVLGTFKLLESSFHY 118
                      *********************9998654 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.058
                      SHHHHHHHHHTTSSEEES-TT-.EEEEE-HHHHHHHHHHHHHH--SS-EEEE--.-EEEHHHHHHHH.. CS
  Polysacc_synt_2 178 viplFkkqikeggpvtvTdpem.tRyfmtieeavqLvlqalalakggeifvldmGepvkivdlakalie 245
                      +ip       e+++++v  + + +R ++ +e+ +  ++  l++++ ge++    G+ ++  +l++++++
       CCG93219.1 203 MIPHMICNALEEKELPVYGKGLnVRDWIYVEDHCAGIWRVLNRGRLGEVYHIAKGKGMTNFELVQKICS 271
                      556666666666677776666536889999999999999999999999999999999999999998874 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   9.3e-17   1.9e-13       1     220 [.       4     234 ..       4     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 9.3e-17
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrlee...lkevrvlDlrespelleelskvnvkk...viegDvtdkdkleeal..egvdvvihlaslvdvag.kltedeimk 90 
                 +vtGgaGF+G++ +   ++ e+   ++++ v+D+   +   e+++++++++   +i++D++d++ +++ l  e++++v+h a+ + v    ++ + + +
  CCG93219.1   4 LVTGGAGFIGSNFCDYCFSNEPssiVEKIIVIDKLGYSGSIENIKELQNRDnfvFIQADICDQKIVSNILfeEKINAVVHFAAESHVDRsIDNPEIFVQ 102
                 69****************99986678899****999999999999999999999***************95567899*********988467788889* PP

   3Beta_HSD  91 vnvkGTrnvleacvk..agvr.......vlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlkngg.rlyTcaLRpa 179
                  nv GT ++le+ ++  ++++       ++v+ S+ ev g   l+++ +  +E   y+  ++++y+ sKa ++++vl+        g   ++T    ++
  CCG93219.1 103 SNVLGTFKLLESSFHyvSSLPrkerdkfRFVHISTDEVYGSIPLEDPPV--KEGGVYD--PSSPYSASKAASDHFVLAYHK---TYGFpAMIT---HSS 191
                 ************986222332222233369**********977777766..6777776..689**************9888...344236666...689 PP

   3Beta_HSD 180 giyGegd...kllvpllkqlaklglalfkigdeevlsdrvYvgN 220
                   yG+++   k++ +++ +++  + +l  +g+  ++ d++Yv+ 
  CCG93219.1 192 NNYGPRQhpeKMIPHMICNALEEK-ELPVYGKGLNVRDWIYVED 234
                 99***9733144555666666666.9****************95 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   1.7e-14   3.4e-11       1     232 [.       1     274 [.       1     280 [. 0.85

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 1.7e-14
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT............................T--TTSHHHHHHHHHHH--SEEEE------HHHHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre............................eldltdaeavaellkeakpdvvvnaAAytavDkaE 68 
                    mkilvtG+ G +Gs+  +   +++ + +    +                            ++d+ d++ v ++l e k ++vv+ AA   vD+  
     CCG93219.1   1 MKILVTGGAGFIGSNFCDYCFSNEPSSIVE--KiividklgysgsienikelqnrdnfvfiQADICDQKIVSNILFEEKINAVVHFAAESHVDRSI 94 
                    89**************99887766433332..22466778999***************************************************** PP

                    HSHHHHHHHHTHHHHHHHHHH..........HHCT-EEEEEEEGGGS-S-..TTS-B-TTS----SSHHHHHHHHHHHHHHHH-SS....EEEEEE CS
  RmlD_sub_bind  69 seeeaayavnaeavealAeaa..........aavgalLihvStDyVFdGe..kkrpYeeddetsPlnvYGrtKlaGEqavlaagkk....alivRt 148
                    +++e   + n+ ++ +l e            ++ +  ++h+StD V+     ++ p +e    +P + Y ++K+a  + vla++k+    a+i   
     CCG93219.1  95 DNPEIFVQSNVLGTFKLLESSfhyvsslprkERDKFRFVHISTDEVYGSIplEDPPVKEGGVYDPSSPYSASKAASDHFVLAYHKTygfpAMITHS 190
                    **************999887622222222223456789*********988878888**************************7775222279**** PP

                    -SEESS..SSS-HHHHHHHHHHH-SEEEEESS..-EE--EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHC CS
  RmlD_sub_bind 149 swvyge..kgknfvktmlrlakereelkvvaD..qlgsPTsardlAevllqllekaaeekelagvyHlanegetswlefArailkeag 232
                    s  yg   + + ++  m+  a e++el v      ++   +++d  + +  +l++        +vyH+a  + ++ +e+ ++i ++++
     CCG93219.1 191 SNNYGPrqHPEKMIPHMICNALEEKELPVYGKglNVRDWIYVEDHCAGIWRVLNRGRL----GEVYHIAKGKGMTNFELVQKICSQLD 274
                    ****97568999*****************98722456667789999999999988886....9********************99876 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.12   2.4e+02       1      12 [.       5      16 ..       5      35 .. 0.84
   2 !   26.2   0.0     2e-09     4e-06      86     207 ..      76     194 ..      45     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.12
                   EE-TTSHHHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvL 12
                   +TG+ GF+G+ +
     CCG93219.1  5 VTGGAGFIGSNF 16
                   7********865 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 2e-09
                    HH--EEEE--SS-S.STTSSE...EHHHHHHHHHHHHHHHT........SSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETT CS
  NAD_binding_4  86 eevdviihsaAtvnfdepyke...llrvNveGtrevlelak........klkklkvllhvSTayvngeregeveekvyeegekeekldederaklk 170
                    e++++++h aA  ++d+++++   +++ Nv+Gt ++le +         k + +  ++h+ST  v+g    e              +   ++    
     CCG93219.1  76 EKINAVVHFAAESHVDRSIDNpeiFVQSNVLGTFKLLESSFhyvsslprKERDKFRFVHISTDEVYGSIPLE--------------DPPVKEGGVY 157
                    78***************999877799***********98877788777766666799999998888887732..............4556677788 PP

                    TCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE CS
  NAD_binding_4 171 glpntYeqsKalaEklvrearrrsglpvvivRpsiit 207
                    + +  Y+ sKa++++ v ++++  g+p++i   s+ +
     CCG93219.1 158 DPSSPYSASKAASDHFVLAYHKTYGFPAMITHSSNNY 194
                    8899***********************9998777655 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00046      0.91       3      67 ..       3      72 ..       1     118 [. 0.77
   2 !    6.4   0.1    0.0027       5.5     147     166 ..     161     180 ..     155     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00046
                EEEESTTSHHHHHHHHHHHHTT-EEEE.....EESCH.HHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvv.....vdrse.ekleevakelkeegakalaiqvDvtdreeveal 67
                +lvtG+++ IG ++++ + ++  + +v     +d+   +   e +kel++ ++++++iq+D+ d++ v+++
  CCG93219.1  3 ILVTGGAGFIGSNFCDYCFSNEPSSIVekiivIDKLGySGSIENIKELQN-RDNFVFIQADICDQKIVSNI 72
                89*****************9997655432101444331233355555554.689********999877765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0027
                 HHHHHHHHHHHHHHHHHHHH CS
   adh_short 147 aaYsAsKaavagltrslake 166
                 ++YsAsKaa ++++ + +k 
  CCG93219.1 161 SPYSASKAASDHFVLAYHKT 180
                 79***********9887765 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.27       3      77 ..       5      85 ..       3      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
                     EE--.SHHHHHHHHHHHCTCCT-G..EEEEEES..SHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS.SEEEE-S CS
  Sacchrp_dh_NADP  3 iiGa.GsvGqavaellarhfdvda..eitvadr..skeklealaakalgvrfeaialdaenyeavLaallkeg.dlvvnls 77
                     + G+ G++G+ + +++  +++ +   +i+v+d+  +  + e++++ +++ +f +i+ d+ +++ v   l +e+  +vv+ +
       CCG93219.1  5 VTGGaGFIGSNFCDYCFSNEPSSIveKIIVIDKlgYSGSIENIKELQNRDNFVFIQADICDQKIVSNILFEEKiNAVVHFA 85
                     55555***************987699******944455667888777**************99977777777788888765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016      0.32       4      92 ..       4      88 ..       2     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
                EEETTTSHHHHHHHHHHHH....HHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE----- CS
          KR  4 litGGlGgLGlelarwlae....kgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvl 92
                l+tGG+G +G  +++   +    +  ++++++ +     + s ++i+el++++ +  +++aD+ d++ v+++l e      +i+ v+h A  +
  CCG93219.1  4 LVTGGAGFIGSNFCDYCFSnepsSIVEKIIVIDKL--GYSGSIENIKELQNRD-NFVFIQADICDQKIVSNILFEE-----KINAVVHFAAES 88
                9***************9984443447888888888..45666779****9987.5668999****99999988665.....599999988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2297.94
//
Query:       CCG93220.1  [L=200]
Description: Riboflavin synthase alpha chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-41  140.0   0.1    1.7e-21   76.0   0.0    2.0  2  Lum_binding  Lumazine binding domain


Domain annotation for each model (and alignments):
>> Lum_binding  Lumazine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.1   1.8e-21   3.2e-17       1      85 [.       3      83 ..       3      84 .. 0.88
   2 !   76.0   0.0   9.6e-26   1.7e-21       1      87 []      98     182 ..      98     182 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 1.8e-21
                 -S--SEEEEEEEEE.ECGCTTEETEESGGGGG..TTT-EEEETTEEEEEEEEEE.SSEEEEEEEHHHHHHSSGGG--TTSEEEEE CS
  Lum_binding  1 tGiVeevgtvesiekeekledltielpelakylvekGdsiavnGvcLTVvteeveeeeftvdvipeTlerttlgelkvgdkVNlE 85
                 tGi+e+ g ve++ +++k ++l+i++  la  l + G s avnG+cLTV+  ++ +ee+++ + +eTl+ ttlgelk gd+VNlE
   CCG93220.1  3 TGIIESRGIVERV-PDSKNKTLSIRAGCLAAEL-KPGISLAVNGCCLTVT--QIIAEEVQFFILEETLRATTLGELKMGDEVNLE 83
                 8************.4556888889777555555.7799***********8..678899*************************** PP

  == domain 2  score: 76.0 bits;  conditional E-value: 9.6e-26
                  -S--SEEEEEEEEE.ECGCTTEETEES.GGGGG..TTT-EEEETTEEEEEEEEEE.SSEEEEEEEHHHHHHSSGGG--TTSEEEEEEE CS
  Lum_binding   1 tGiVeevgtvesiekeekledltielp.elakylvekGdsiavnGvcLTVvteeveeeeftvdvipeTlerttlgelkvgdkVNlEra 87 
                  tG+V+   t+ +iek ++ +++ i++p   + y+v+kG siav+G++LT+   ++++e+f v + p Tl++t+l+++++gdkVNlE++
   CCG93220.1  98 TGHVDCKQTICAIEKLGEEKEIWIHYPsFAKSYMVPKG-SIAVEGISLTIG--KITNESFCVWITPFTLNHTNLRTKRPGDKVNLEFD 182
                  8************98899*********77889******.***********8..799******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1361.77
//
Query:       CCG93221.1  [L=242]
Description: Short-chain alcohol dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-36  123.5   0.0    8.8e-36  123.2   0.0    1.0  1  adh_short        short chain dehydrogenase
    5.5e-34  117.7   0.0      1e-33  116.9   0.0    1.4  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    8.4e-09   35.6   0.0    1.2e-08   35.1   0.0    1.2  1  KR               KR domain
    0.00031   20.3   0.0     0.0012   18.3   0.0    1.8  2  Epimerase        NAD dependent epimerase/dehydratase family
     0.0011   18.2   0.0     0.0013   17.9   0.0    1.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
       0.02   14.3   0.0       0.03   13.7   0.0    1.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
      0.044   13.5   0.0      0.073   12.7   0.0    1.3  1  DHquinase_II     Dehydroquinase class II
      0.055   12.5   0.0      0.074   12.1   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
       0.13   11.6   0.1       0.19   11.0   0.1    1.2  1  Enoyl_reductase  Trans-2-enoyl-CoA reductase catalytic region


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.0   4.4e-39   8.8e-36       1     183 [.       6     191 ..       6     199 .. 0.94

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 4.4e-39
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 kvvlvtG+++G+G  ++++l +e+++vv+ + +see++ ++ ke+++eg+kal++q+D+++++e++ +++k++  +g+ld+++nN G+   +p + ++e
  CCG93221.1   6 KVVLVTGGAKGLGAYLCRKLSSEDWSVVIhYYKSEEQASALEKEFEREGKKALTVQADLSKQNEARGIIDKIRTVFGRLDAVINNSGVYDAVPLELTEE 104
                 89***************************99***************************************************************99999 PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG..TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvag..kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd 183
                 ++w r i+    +v+ +t a lp +  + +GrIvn++   +    + ++   Y   K +v  lt+s+a+e a++gi+vn+v PG+++
  CCG93221.1 105 KDWFRGINSTASAVLFTTLASLPLLRLSGRGRIVNIGDSSCdrIGSREMALGYHLGKIGVYLLTKSFARENARYGITVNVVSPGYLE 191
                 99**********************************7555531445667778********************************987 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.0   5.1e-37     1e-33       1     234 []      12     240 ..      12     240 .. 0.89

  Alignments for each domain:
  == domain 1  score: 116.9 bits;  conditional E-value: 5.1e-37
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   G a+g+G+ + ++l +e ++vv+++++ e+ ++++e+  e+ g+++  +++D +++++ + ++++++  fg+lD ++nn g+ ++   p++ t++++
    CCG93221.1  12 GGAKGLGAYLCRKLSSEDWSVVIHYYKSEEqASALEKEFEREGKKAltVQADLSKQNEARGIIDKIRTVFGRLDAVINNSGVYDA--VPLELTEEKD 106
                   6689***********************999777777777777766447*************************************..********** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEE.EEGGGTSBSTTTT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHH CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeg..gsivnl.ssvgaervvpnyn.aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfde 187
                   + r ++  + +++ ++ a lpl++ +  g+ivn+  s + +++  + +  y+  K ++  lt+++A+e +++gi+vN+vspg+++   ++g++    
    CCG93221.1 107 WFRGINSTASAVLFTTLASLPLLRLSgrGRIVNIgDSSCDRIGSREMAlGYHLGKIGVYLLTKSFARENARYGITVNVVSPGYLE--NSQGLP---- 197
                   *********************6664437******5444455555555679***********************************..445565.... PP

                   HHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 188 lleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                         +++p gr gt e++ + + f++ ++ syitG++l+v gG++
    CCG93221.1 198 ----PLSKIPAGRYGTFEDIWRGVKFFLDEKQSYITGSHLIVSGGWN 240
                   ....34789************************************86 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   5.9e-12   1.2e-08       2     107 ..       7     109 ..       6     120 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 5.9e-12
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 ++l+tGG+ gLG  l+r l ++  + ++   +s   +e+++al +e+e+ g +  +v+aD+s++++ + ++++i++ ++++  vi+  gv +  +le +
  CCG93221.1   7 VVLVTGGAKGLGAYLCRKLSSEDWSVVIHYYKS---EEQASALEKEFEREGKKALTVQADLSKQNEARGIIDKIRTVFGRLDAVINNSGVYDAVPLELT 102
                 579*******************99999999888...67777899*****************************************************99 PP

                 -HHHHHH CS
          KR 101 taedleq 107
                 +++d+ +
  CCG93221.1 103 EEKDWFR 109
                 9999865 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.2e-07    0.0012       1      69 [.       8      81 ..       8     130 .. 0.79
   2 ?   -0.5   0.0      0.34   6.8e+02     142     176 ..     157     188 ..     149     205 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.2e-07
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHHT-SEEE CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkeeqpdavi 69
                +lVtG++  +G++l+++l ++++ v+    +s+++++a++++          v++dl ++++ + ++++  + +v+
  CCG93221.1  8 VLVTGGAKGLGAYLCRKLSSEDWSVVIHYYKSEEQASALEKEFeregkkaLTVQADLSKQNEARGIIDK--IRTVF 81
                79********************99877777777777777777688***9999*********99988884..44443 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT CS
   Epimerase 142 YaaaKlageklveayaaqyglnaiilrlfnlyGpr 176
                 Y + K+ ++ l++++a+++   a  ++  n+++p+
  CCG93221.1 157 YHLGKIGVYLLTKSFAREN---ARYGITVNVVSPG 188
                 8888999999999999999...6777778888887 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   6.8e-07    0.0013       1      82 [.       8      81 ..       8     100 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6.8e-07
                     EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEE CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvf 82
                     vlvtG++  +G  l+r++ +++ + +i + ++E +  ++eke+e+e kk  l+v+     +d+ ++++ + +++  k+ +vf
       CCG93221.1  8 VLVTGGAKGLGAYLCRKLSSEDWSVVIHYYKSEEQASALEKEFEREGKK-ALTVQ-----ADLSKQNEARGIID--KIRTVF 81
                     89****************************************9766655.55454.....77777777777777..555555 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.5e-05      0.03       1      75 [.       9      78 ..       9      89 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevq 75
                   L+TG+a   G+yl+++L +++  v+ i  ++s+ +++ +e+  +++     ++   +++Dl+ +++ + ++++++
     CCG93221.1  9 LVTGGAKGLGAYLCRKLSSEDWSVV-IHYYKSEEQASALEKEFERE----GKKALTVQADLSKQNEARGIIDKIR 78
                   8*********************996.56677777888888766543....4567789*************99985 PP

>> DHquinase_II  Dehydroquinase class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.6e-05     0.073      24      77 ..      41      95 ..      34     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.6e-05
                  S-HHHHHHHHHHHHH.HTT-EEEEEE-S-HHHHHHHHHHCTTT.TEEEEE-GGGG CS
  DHquinase_II 24 etledieeelkekae.elgvelevfqsnhEgelidriqeakekvdgiviNpgayt 77
                  e+ +++e+e +++ + +l v+ ++ ++n    +id+i+++  ++d+++ N+g y 
    CCG93221.1 41 EQASALEKEFEREGKkALTVQADLSKQNEARGIIDKIRTVFGRLDAVINNSGVYD 95
                  56778899998766526899********************************995 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.7e-05     0.074       1      71 [.       9      81 ..       9      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.7e-05
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk..viegDvtdkdkleealegvdvvi 71
                +vtGga  lG++l+++L +++    ++ +  +e+ + le+ ++ + kk  ++++D+ ++++ +  ++++  v+
  CCG93221.1  9 LVTGGAKGLGAYLCRKLSSEDWSVVIHYYKSEEQASALEKEFEREGKKalTVQADLSKQNEARGIIDKIRTVF 81
                69*******************999999999999999999888877777799**********999999998876 PP

>> Enoyl_reductase  Trans-2-enoyl-CoA reductase catalytic region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   9.7e-05      0.19      11      55 ..      44      88 ..      35      93 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.7e-05
                     HHHHHHHHHTT--EEEEES-TTSHHHHHHHHHHHHHCTT-EEEEE CS
  Enoyl_reductase 11 aafekaakkaglyaksingDafsdevkekvielikeelgkvDlvv 55
                      a+ek+ +++g++a ++++D   ++  + +i++i++ +g++D v+
       CCG93221.1 44 SALEKEFEREGKKALTVQADLSKQNEARGIIDKIRTVFGRLDAVI 88
                     6889999**************9999999***************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1598.96
//
Query:       CCG93222.1  [L=327]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-12   44.7   0.0    1.2e-11   44.3   0.0    1.2  1  Methyltransf_33  Histidine-specific methyltransferase, SAM-de


Domain annotation for each model (and alignments):
>> Methyltransf_33  Histidine-specific methyltransferase, SAM-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   6.8e-16   1.2e-11      61     308 ..      79     326 ..      16     327 .] 0.81

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 6.8e-16
  Methyltransf_33  61 paa...tlvelGsGsseKtrlLLealeaaekeltYvplDvseeaLeealealaaeypsleveglvgdy..edglewlaslpeaederrlvlflG 149
                      p++   +l+ lG+G++eK +++L++l a ++el ++ +D s + L ea+       ++ +++++++d   +d    l++l++ + +rr+++++G
       CCG93222.1  79 PTSlpyELISLGCGTGEKDHIFLNELLAIASELSWICIDTSLQLLLEACIHCPI--NKEKITPILSDIlwKDT---LEALQTDHMGRRIFTLFG 167
                      4445669*******************99999*****************988855..47789999999633666...5555555579*******9 PP

  Methyltransf_33 150 ssigNlepeeaaafLrklraalgpgdllLlGvD...........lvkdeekleaAYndsagvtaaFnlnllerinrelgadfdledfehvaewn 232
                        + N++p    + L+++   l+p+d+l+l++              +  e +++ Y++++   + +++++l+        + + e f++    +
       CCG93222.1 168 -ILPNIDPFLLFRSLESI---LSPKDYLVLSAHlapvktestedYLEGIESVLDQYDNAET--RLWLTEILRDWG----IEDKTELFNISIGME 251
                      .9****997766666665...8889********8888887777655888999999999965..667666666655....44488999999999* PP

  Methyltransf_33 233 aeegriemylrskrdqtvrvealdltvafkagekirteiSyKyteeevrelleaaglevlkvWtdeksdfalyllq 308
                      ++  rie+ +  k++ ++ v++ +++v + +g+ +r+++Sy++t e+++e +++   +vl+ W  ++++ ++ llq
       CCG93222.1 252 NNFFRIEATVYWKESGSIPVGS-GKEVPIIKGKPLRLFYSYRFTVERLEEFFSKWHYKVLDRWIFHNKEEGIWLLQ 326
                      ******************9995.889*************************************9999988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2054.01
//
Query:       CCG93223.1  [L=462]
Description: membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-44  150.1  26.0    9.2e-44  149.8  26.0    1.1  1  Competence  Competence protein


Domain annotation for each model (and alignments):
>> Competence  Competence protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8  26.0   5.1e-48   9.2e-44       1     250 [.       1     267 [.       1     280 [. 0.90

  Alignments for each domain:
  == domain 1  score: 149.8 bits;  conditional E-value: 5.1e-48
  Competence   1 LllGdrselseevweafqktGlaHllAiSGlHvglvagllllllrrlllrlplrkla.allallflllYallaGfspsvlRAllmlllvllalllkrka 98 
                 +++Gd s+l++e+  afq++G++Hl+A+SG +vg+++g+ +lll+       +++++  l+ +++l+++ +++G s svlRA+  ++  +++ +lkrk+
  CCG93223.1   1 MVYGDVSGLDQEDALAFQRAGTYHLFAVSGQNVGIMLGFWILLLQST----GTNRWKySLVFIPVLFVFSMVSGNSASVLRAFSAAVYCTIGWFLKRKV 95 
                 689******************************************99....77777779**************************************** PP

  Competence  99 spldalalaallvllvdPlallsaGfqLSflavagilllaprlekalkrlskkvrelllla....................vslaaqlallplllylfg 177
                 s l+++a+++ll ll++Pl++++a++ LS+ +v+++ll++++l +      k  ++l l +                    +sl+a+l+  p  + lf+
  CCG93223.1  96 SGLNCWAFTLLLFLLFEPLSIMDASLELSYSVVLALLLISKPLFQFFYSFFKLDPYLPLELasigkqfidrigksfclllsTSLSAWLGACPWEFCLFH 194
                 ****************************************55555443333322221111134566667788888999999****************** PP

  Competence 178 qislvsllaNllavPlvsllvlplallallllllpslaalllqladlllelllellellaslplaslvlgkps 250
                 +is+++++ N++avP+++++vl ++l+a+  ++ ++la++l ++++++l lll++++  +++p+a ++++ ++
  CCG93223.1 195 SISWLGIFYNIIAVPIAEIIVLLGSLAAVGGFVSSLLASILNKITHMFLLLLLAVVHSSTKIPGAIISIPDMK 267
                 ********************************999******************************99997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3180.79
//
Query:       CCG93224.1  [L=217]
Description: hypothetical protein MFUM_960005 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-20   71.2   0.0      1e-19   70.8   0.0    1.2  1  DUF4131     Domain of unknown function (DUF4131)
  ------ inclusion threshold ------
       0.46   10.9   5.0        0.7   10.3   3.6    1.9  2  ATP-synt_I  ATP synthase I chain


Domain annotation for each model (and alignments):
>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   1.1e-23     1e-19       9     160 ..      41     195 ..      23     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 1.1e-23
     DUF4131   9 llalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqlles....gqeviveGvvaslpeltgsgtrfvlevervlsagktkp 103
                 l +ll+ l+++l l+++  ++r +  +++l+ l++l+ f +r ++  a++    l++     q     G+v+s p+++++ t f l+ + + s+gk+ p
  CCG93224.1  41 LGLLLGSLIFFLSLWSQASRNRLFSEVVCLCSLFLLGLFNCRFHRYLAEKEMAMLHEklaaFQNLHCLGYVSSFPQQKERATYFLLNLKAIESGGKWLP 139
                 44566666666666666688999999999999999999999999999999999999555554444489******************************* PP

     DUF4131 104 vsgrvlvtvpkspaeglrpGdrlrltgrlkrprpatNpggFDyraYLarqgIfatly 160
                  +g+ l  v++ +   ++ G+ ++++g++  p++ +N g+ D+ +YL ++gI++ l 
  CCG93224.1 140 MKGKALCRVEDWQGR-VHLGQLITVSGKIILPHKKSNAGEVDFYKYLVEKGISFELL 195
                 *********988888.************************************99875 PP

>> ATP-synt_I  ATP synthase I chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.6   7.8e-05       0.7      10      46 ..      24      60 ..      20      70 .. 0.88
   2 ?   -0.6   0.0      0.19   1.7e+03      34      58 ..      67      91 ..      57     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.8e-05
  ATP-synt_I 10 lavlalgwlltgsasvalsallGglisvlpfalfalr 46
                ++++a g++l ++  + l++llG li +l+++  a r
  CCG93224.1 24 AIIFATGCYLGSQGMFNLGLLLGSLIFFLSLWSQASR 60
                5899*******9********************99877 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.19
  ATP-synt_I 34 lisvlpfalfalrvfrfsgalarkk 58
                ++++ +++l+ l+ +rf+++la+k+
  CCG93224.1 67 VVCLCSLFLLGLFNCRFHRYLAEKE 91
                5677788888888888899888843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1597.53
//
Query:       CCG93225.1  [L=253]
Description: Rhodanese-related sulfurtransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-14   54.4   0.0    2.4e-14   53.7   0.0    1.3  1  Rhodanese  Rhodanese-like domain
    1.1e-07   32.2   0.0      2e-07   31.3   0.0    1.4  1  DUF5069    Domain of unknown function (DUF5069)


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   2.7e-18   2.4e-14       6     107 .]      39     126 ..      33     126 .. 0.86

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 2.7e-18
   Rhodanese   6 kellekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGGfkaw 104
                  +l++k +  ++DvR +e++  ghIpgA+ +          + ++l + +e + ++    ++++++y+++g ++  aa++l ++Gy n + ++ G+++w
  CCG93225.1  39 SDLQNKSG-LVIDVRKKEDWFMGHIPGAIWI----------ERSKLEKEVENIVPQ---SESKIICYGEDGAQSILAAYTLNEMGYINTYWMEKGWEGW 123
                 45555555.4*********************..........777777777777776...9*************9999********************** PP

   Rhodanese 105 kea 107
                 ke+
  CCG93225.1 124 KEK 126
                 985 PP

>> DUF5069  Domain of unknown function (DUF5069)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   2.2e-11     2e-07       4      96 ..     138     233 ..     136     251 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2.2e-11
     DUF5069   4 pRSprerlgglvilpRliDKvRlhaaGkl..geYvynctlDarllsFlgidpealreavlsgksDeeilawvkenak..prsaeeieeWnkslekrg 96 
                 +R p e+lgg+++lpRl DK+    + kl  +eY +    D+ +l+ l id+  l+++  s++++++ l ++k+      +s++ i+++n++++ r+
  CCG93225.1 138 MRDPLEKLGGICYLPRLFDKIKGLYSSKLppTEYLQ-DDWDKAILELLCIDATLLEQVCISSENEQKFLMELKKILGpsWPSQHMIDQFNERCQLRK 233
                 6899*************************8777765.689*********************************9876456899*******9998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1897.55
//
Query:       CCG93226.1  [L=632]
Description: tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.8e-160  531.9   0.0   2.3e-159  530.7   0.0    1.6  2  GIDA           Glucose inhibited division protein A
    5.4e-66  222.8   0.4    9.6e-66  222.0   0.4    1.4  1  GIDA_assoc     GidA associated domain
    1.5e-06   27.9   0.3    2.5e-06   27.1   0.3    1.3  1  FAD_oxidored   FAD dependent oxidoreductase
    0.00031   20.1   0.1      0.033   13.4   0.0    2.4  3  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    0.00043   19.5   0.8      0.006   15.7   0.4    2.2  2  FAD_binding_2  FAD binding domain
    0.00065   19.0   1.6     0.0049   16.1   1.6    2.1  1  Thi4           Thi4 family
    0.00069   18.9   0.1     0.0015   17.9   0.1    1.6  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0029   16.9   0.1     0.0094   15.3   0.1    1.7  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
     0.0034   16.1   1.9      0.059   12.1   0.3    2.7  3  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
      0.011   16.3   0.3      0.048   14.2   0.2    2.1  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.16   11.2   0.3       0.25   10.5   0.3    1.3  1  FAD_binding_3  FAD binding domain


Domain annotation for each model (and alignments):
>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  530.7   0.0  1.4e-162  2.3e-159       1     391 [.      21     427 ..      21     428 .. 0.97
   2 ?   -3.2   0.0       2.1   3.4e+03     280     299 ..     458     477 ..     448     484 .. 0.82

  Alignments for each domain:
  == domain 1  score: 530.7 bits;  conditional E-value: 1.4e-162
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SHHHHHHHHEEEEEEESTTS-CCC-EEEEEE-HHHHHH CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkldtiaelsCnpsiggiakgllvrEidalggliikaadkagiqfrilNrskGpavralraqvdrelysk 99 
                 dviV+G+GhAG+eAAla++r+G++++L+t++ldti+++sCnpsiggi+kg+lvrEidalgg+++  +d +giqfr+lN +kG +v+a+raq+d+++y+ 
  CCG93226.1  21 DVIVVGAGHAGVEAALASSRMGCRTMLLTMNLDTIGQMSCNPSIGGIGKGHLVREIDALGGEMAINTDLTGIQFRMLNMRKGYSVQAPRAQCDKKAYQF 119
                 8************************************************************************************************** PP

                 HHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT-EEEETTEEEESSCTTC--B-THHHHHHHTT--EEEEEEEE--EE CS
        GIDA 100 evteklenepnleiieeeveeliveekkvkgvvtedgetikakavviatGtflkgkihigekelsaGrlgeltseglseslkelgfellrlktgtppri 198
                 +++++ e++p l++++++v++liv+e++v gv+te g +i++++v+i+tGtflkg  h+g+++   Gr+g  +s glse lk++gfe++rlktgtppri
  CCG93226.1 120 RLKAVCERTPLLDLFQASVADLIVKEDRVMGVITELGMIIHSSTVIITTGTFLKGLLHVGRSKKMGGRMG-ESSSGLSEILKKYGFEVGRLKTGTPPRI 217
                 **********************************************************************.8999************************ PP

                 EGGGS-TTTSEEE---SS-B-SSSSSSSTCG--..................--EEEEE--HHHHHHHHCTCCC-T.T----B--S-CCC-SSTCCCCCC CS
        GIDA 199 dkesidfskleeqsgdkegeefsylnkplnkeq..................vecfltatneathkiikenlkksaklfegcieelgprycpsiedkivr 279
                 ++++idfsk++ q+gd ++++fs+   +++                     ++c +t+tn++th+iikenl+ks+ l+ g+i+++gprycpsiedkivr
  CCG93226.1 218 NGKTIDFSKCILQPGDFPPPHFSFALPDIDMASeglftlnqwkdgmfhveqLSCAITYTNAKTHDIIKENLDKSP-LYCGEIQGIGPRYCPSIEDKIVR 315
                 ****************88999999999885333356777777788888777************************.*********************** PP

                 STT-S--EEEEEESSTT--EEEEET----S-HHHHHHHHTTSTT-TT--EEE--EEEEEEEE-GGGB-TTSBBSSSBTEEE-CGGGTB-SHHHHHHHHH CS
        GIDA 280 ladkeshqvfLepegleteliylvgfstslpeevqkevlrsipGLenaeivrpGyaieydyvdprqllntLetkkvkgLflAGqinGteGYeEaaaqGl 378
                 +adke+hq+fLepeg++te++y++g+stslp+evq++++++i GLe+++i+rpGya+eydy++++q+++tLetk+++gLf+AGqinGt+GYeEaaaqGl
  CCG93226.1 316 FADKERHQIFLEPEGKHTEEYYVNGCSTSLPYEVQDQFIHTIAGLEKCQIIRPGYAVEYDYCPATQIYPTLETKNISGLFFAGQINGTTGYEEAAAQGL 414
                 *************************************************************************************************** PP

                 HHHHHHHHHHCTS CS
        GIDA 379 lAGinaarkakgk 391
                 lAGinaark++++
  CCG93226.1 415 LAGINAARKIQNR 427
                 ***********97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.1
                 STT-S--EEEEEESSTT--E CS
        GIDA 280 ladkeshqvfLepegletel 299
                 ++ +++h++ L++++++ +l
  CCG93226.1 458 FTSRAEHRLLLRQDNADLRL 477
                 78999**********98776 PP

>> GIDA_assoc  GidA associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.0   0.4   5.9e-69   9.6e-66       2     209 ..     431     621 ..     430     622 .. 0.94

  Alignments for each domain:
  == domain 1  score: 222.0 bits;  conditional E-value: 5.9e-69
                 ---TTT-HHHHHHHHHHHH--SS-B-CCCB--TTTCCC-CCCHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHH.HHHT.. CS
  GIDA_assoc   2 ilkRseaYiGVLiDDLvtkgvkEPYRmfTSRaEyRlllRaDnAdlRLtekgrelGlvseeryekfeekkeeieelkellkstklkseewkkllekkesk 100
                 +l R++aYiGVL+DDL+tk ++EPYR+fTSRaE+RlllR+DnAdlRLte+g+e+Glvs++r  ++eekk+ i+e+ ++++++++              +
  CCG93226.1 431 VLGRDQAYIGVLVDDLTTKPIREPYRIFTSRAEHRLLLRQDNADLRLTEIGYEIGLVSKARAIRLEEKKRLIDETFQKIRKYRY--------------N 515
                 899*****************************************************************************9977..............3 PP

                 ..EHHHHCTTST--HHHHHCCHHHHHHHSCHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHTSB--TTS-CCCSTT--CHHHHHHHHH--SCHHHHTTST CS
  GIDA_assoc 101 klslaellkrpevkledlleelpeeeeeseeeleqveieakYegyiekqeeeieklkkeenlkipedldYskikgLskearekLkkvrPetlgqAsris 199
                  +s+ +llkrpe +++dl ee+   ++  +e++ ++e e+kY+gyi++++e+i k +k+e++ ip+++dY+ki+gL++earekL k+rP t+gqAsri+
  CCG93226.1 516 GMSCEDLLKRPEYSWKDLPEEF---QKVPKEVALHIECEIKYAGYIAREKESILKSHKLEETLIPANIDYEKIPGLKQEAREKLMKIRPLTFGQASRIP 611
                 56899*************4333...3455666******************************************************************* PP

                 TS-HHHHHHH CS
  GIDA_assoc 200 GvtpaaisvL 209
                 Gv+p+++s+L
  CCG93226.1 612 GVNPTDVSIL 621
                 ********99 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.3   1.5e-09   2.5e-06       1     126 [.      21     154 ..      21     169 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.5e-09
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLve..........ergvlGGlltsglvatdignkaeeqvvtgiareflerlrqrggarlkkrskwntfepe 87 
                   Dv+VvG+g aGv AA+a+ r+G +++L+            ++ +GG   + lv  ++    e +++t + +  ++ l+ r+g++ ++++++   + +
    CCG93226.1  21 DVIVVGAGHAGVEAALASSRMGCRTMLLTmnldtigqmsCNPSIGGIGKGHLVREIDALGGEMAINTDLTGIQFRMLNMRKGYSVQAPRAQ--CDKK 115
                   9*************************99744444444445788888888889888888887778888888888888878888867755554..8999 PP

  FAD_oxidored  88 vakavleemlaeagvtvllntrlvevekegkriesvtve 126
                   +++  l++++++  +  l+++ + + +++++r+ +v++e
    CCG93226.1 116 AYQFRLKAVCERTPLLDLFQASVADLIVKEDRVMGVITE 154
                   999999999955444445555555555554588888875 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     2e-05     0.033     158     195 ..      13      50 ..       2      65 .. 0.79
   2 ?    4.1   0.0     0.015        24      75     135 ..     109     171 ..      67     177 .. 0.73
   3 ?   -3.0   0.0         2   3.3e+03     256     305 .]     348     398 ..     331     398 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2e-05
  Pyr_redox_3 158 efhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtr 195
                  +++  ++ +v+V+G++  +v+aAl   r+g++  ++t 
   CCG93226.1  13 KMKYAKTYDVIVVGAGHAGVEAALASSRMGCRTMLLTM 50 
                  444456789**********************9988875 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.015
  Pyr_redox_3  75 eeklsrkealeYlrevaksfelpiklfeeVes.vkkedegfevetske.tyeAkkviiAtGef 135
                  + ++ +k +   l++v+++  l    + +V + + ked+   v t+ +  +++++vii tG f
   CCG93226.1 109 RAQCDKKAYQFRLKAVCERTPLLDLFQASVADlIVKEDRVMGVITELGmIIHSSTVIITTGTF 171
                  5567777777778888888887666666675427889999******99799**********99 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2
  Pyr_redox_3 256 evkddvvlatGykpdlsflkk.slfeldedgrpvlteeteetnvpglflaG 305
                  ev+d+++  +    ++++++    +e+d     ++ +  e  n++glf+aG
   CCG93226.1 348 EVQDQFIHTIAGLEKCQIIRPgYAVEYDYCPATQIYPTLETKNISGLFFAG 398
                  556666666555666666664333444444445566777778999999998 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.4   3.7e-06     0.006       1      29 [.      21      49 ..      21      59 .. 0.93
   2 ?    1.6   0.0      0.07   1.1e+02     159     202 ..     133     171 ..      97     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.7e-06
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEE CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavve 29
                   DviV+G+G AG  AAl+ ++ G ++++++
     CCG93226.1 21 DVIVVGAGHAGVEAALASSRMGCRTMLLT 49
                   9*********************9999986 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.07
                    EESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE----- CS
  FAD_binding_2 159 qerteadeLivedgrvtGavvenpesgrevrirakavvlatgGf 202
                    ++++++++Liv+++rv G++ e    g    i++  v+++tg f
     CCG93226.1 133 LFQASVADLIVKEDRVMGVITE---LGM--IIHSSTVIITTGTF 171
                    57899*************9988...222..24566777777777 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.6     3e-06    0.0049      14     142 ..      15     158 ..       9     167 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3e-06
                 HHTEE.EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTT....TTSTTBSEEEEETTT.......HHHHHHTT---EEESSEEEESEH.HHH CS
        Thi4  14 kyaes.DvvivGaGssGLtaayylakkpdlkvailersvspGGGaw....lGGqlfsaivvrkpa.......kelLdelgikyedegdyvvvkda.alf 99 
                 kya++ Dv++vGaG +G+ aa   ++  + ++++l  ++   G +      GG    ++v + +a       +  L  ++ ++ ++++++ v+   a+ 
  CCG93226.1  15 KYAKTyDVIVVGAGHAGVEAALASSRM-GCRTMLLTMNLDTIGQMScnpsIGGIGKGHLVREIDAlggemaiNTDLTGIQFRMLNMRKGYSVQAPrAQC 112
                 566543***************999988.******99999776655322225676666666555442222111344677778888999999997541333 PP

                 HHHH....HHHHHTS.TTEEEEESEEEEEEEEETBTEEEEEEEEEHHH CS
        Thi4 100 tstl....lskvlql.anvkllnavaveDlivregegvaGvvinwtlv 142
                   +     l +v+++ + + l++a +v Dliv+e ++v Gv+++  ++
  CCG93226.1 113 DKKAyqfrLKAVCERtPLLDLFQA-SVADLIVKE-DRVMGVITELGMI 158
                 322211113344554156677765.899******.9******987665 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1     9e-07    0.0015       1      30 [.      20      49 ..      20     128 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 9e-07
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlve 30
                 +dv+v+G+G+AG++aal  ++ g++++l+ 
   CCG93226.1 20 YDVIVVGAGHAGVEAALASSRMGCRTMLLT 49
                 69**********************999984 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   5.8e-06    0.0094      29      67 ..      20      58 ..      11      67 .. 0.89
   2 ?   -2.6   0.0       1.7   2.8e+03       4      34 ..     591     621 ..     590     621 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.8e-06
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDvrparleql 67
                   v+v+G+G aG++A+ +++++g ++++l ++ +++ q+
   CCG93226.1 20 YDVIVVGAGHAGVEAALASSRMGCRTMLLTMNLDTIGQM 58
                 579***************************999998776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.7
                  HHHHHCSCGCTSEEETTCEETCB---EEEEE CS
  AlaDh_PNT_C   4 eaakalekffggkgtlaGgvpgvepakvlvi 34 
                  ea ++l k  + +   a+++pgv+p  v ++
   CCG93226.1 591 EAREKLMKIRPLTFGQASRIPGVNPTDVSIL 621
                  566778888888888999********99986 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.3   3.6e-05     0.059       1      30 [.      20      49 ..      20      58 .. 0.91
   2 ?   -1.3   0.0      0.43     7e+02     129     163 ..     135     169 ..     121     172 .. 0.88
   3 ?    2.0   0.0     0.041        68     369     390 ..     385     403 ..     382     417 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.6e-05
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE- CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVllle 30
                 +dviv+G+G AG+ aA++ ++ g+r++ll 
   CCG93226.1 20 YDVIVVGAGHAGVEAALASSRMGCRTMLLT 49
                 59************************9986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.43
                  S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 129 etevksvekeedgkfrvktkseeeleadklvlAtG 163
                  + +v+++  +ed+++ v t+ +  +++++++++tG
   CCG93226.1 135 QASVADLIVKEDRVMGVITELGMIIHSSTVIITTG 169
                  778999999**********9999**********99 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.041
                  T-BBTTSTTEEE-GGGBSEEE- CS
  HI0933_like 369 tmeskkvpgLffaGEvlDvegv 390
                  t+e+k+++gLffaG +   +g 
   CCG93226.1 385 TLETKNISGLFFAGQI---NGT 403
                  89************76...444 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   2.9e-05     0.048       2      31 ..      22      51 ..      21      91 .. 0.87
   2 ?   -2.4   0.0       4.6   7.5e+03       7      42 ..     555     592 ..     555     598 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.9e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                v+vvG+G  g+E+A a +++g+++ ++ ++
  CCG93226.1 22 VIVVGAGHAGVEAALASSRMGCRTMLLTMN 51
                89*********************9888764 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.6
                 SSHHHHHHHHHHHHTTSEEEEEESSSSSS..TTSSHHH CS
   Pyr_redox   7 gGyiglElAgalaelgkkVtvversdkll..rllDeea 42 
                 +Gyi+ E  ++l+ ++ + t++ ++      ++l +ea
  CCG93226.1 555 AGYIAREKESILKSHKLEETLIPANIDYEkiPGLKQEA 592
                 69999999999999999999998776555455555555 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   0.00016      0.25       2      31 ..      20      49 ..      19      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlve 31
                   +dV++VGaG aG+ +al  s+ G r++l++
     CCG93226.1 20 YDVIVVGAGHAGVEAALASSRMGCRTMLLT 49
                   79*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4805.03
//
Query:       CCG93227.1  [L=482]
Description: Replicative DNA helicase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-85  285.9   0.0    5.1e-85  284.9   0.0    1.5  2  DnaB_C          DnaB-like helicase C terminal domain
    1.3e-28   99.1   2.4    7.8e-27   93.4   1.0    2.6  2  DnaB            DnaB-like helicase N terminal domain
    3.1e-11   43.2   0.0    5.4e-11   42.4   0.0    1.3  1  AAA_25          AAA domain
    7.3e-07   28.8   1.3    2.5e-05   23.8   0.3    3.4  2  ATPase          KaiC
    0.00022   21.8   0.7     0.0007   20.2   0.7    2.0  1  DnaG_DnaB_bind  DNA primase DnaG DnaB-binding
     0.0057   16.9   0.0      0.018   15.3   0.0    1.9  1  AAA_22          AAA domain
  ------ inclusion threshold ------
      0.058   13.6   0.2       0.27   11.5   0.2    2.1  2  ICAT            Beta-catenin-interacting protein ICAT
      0.062   12.6   0.0       0.13   11.6   0.0    1.4  1  Lipase          Lipase
       0.15   10.8   0.1       0.23   10.3   0.1    1.2  1  HcyBio          Homocysteine biosynthesis enzyme, sulfur-inco
       0.49   10.1   4.2        4.7    6.9   0.1    3.1  3  IstB_IS21       IstB-like ATP binding protein


Domain annotation for each model (and alignments):
>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.4   6.1e+03      78     107 ..      69      86 ..      28      92 .. 0.54
   2 !  284.9   0.0   2.8e-88   5.1e-85       1     255 []     205     471 ..     205     471 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.4
                 HHHHTTSXHHHHHHHHHHHHHHHHSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  78 klrtgklkeedweklteaieelseaklfid 107
                 ++            l eai+el+  k+ id
  CCG93227.1  69 RI------------LFEAISELHAKKIAID 86 
                 33............3445555555555555 PP

  == domain 2  score: 284.9 bits;  conditional E-value: 2.8e-88
                 SBXSSTHHHHHHCTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHH...........CSTSEEEEEESSSXHHHHHHHHHHHHHTXXHHHHHHTTSXHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   1 GlstgfkdLDkltsGlqkgdliiiAarpsmGktalalniaenaav...........keklpvavfslemsaeqlvqRllsseaeidskklrtgklkeed 88 
                 G++tgf++LD++t+G+q+gd+i++Aarp++Gktal l++a +a +           k   +v +fslem+a q++ Rll++ ++ +++k+r+g+l+ + 
  CCG93227.1 205 GIPTGFHHLDQITTGWQNGDMIVLAARPGVGKTALGLTFACRALKerydqtkdlwiKPGYSVGFFSLEMTAVQIMLRLLAAIGSESLQKIRRGELEPAS 303
                 9***************************************988865666554444444446************************************** PP

                 HHHHHHHHHHHHHSEEEEEEXSSXCHHHHHHHHHHHHHHTTEEEEEEEEGGGTBTS.CS.SSCCCHHHHHHHHHHHHHHHHCTSXEEEEEEXSGGGCCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  89 weklteaieelseaklfiddtpaltvseirskarrlkkekglgliviDyLqlmegs.ee.kenreqevseisrsLkalakelnvpvialsqLsravesr 185
                 +ekl   +++ +e +++idd+++lt++++r+karr+k++ g++li+iDyLql++++ ++ kenr+ e+seisr++kalakeln+p+i+l+qL+r++e+ 
  CCG93227.1 304 LEKLRMLADDAKEWPFYIDDSSDLTIHQLRAKARRMKNQFGVDLIIIDYLQLLHSDsQQaKENRQVEISEISRGIKALAKELNIPIIVLAQLNRRMEEG 402
                 ******************************************************87544689**********************************976 PP

                 CCHSXXHHHHCCTTSCCCCXSEEEEEEECCHHHHHHCHHCEEEEEEEEETTSXXEEEEEEEETTTTEEEX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 186 edkrPvlsDLreSgsieqdADvvlflyrdeyykedseekgkaeiiiaKhRnGptgtvklafekeytrFen 255
                    +P l  LreSg+ieqdADvv++l+r e  + ++ +k    i +aK+RnGpt+++++ f++ ytrFe+
  CCG93227.1 403 -RSEPALHHLRESGAIEQDADVVILLHRLESDSVTDVTKIPYLIHVAKQRNGPTDKIEVLFNAPYTRFED 471
                 .678************************98887444334456888***********************86 PP

>> DnaB  DnaB-like helicase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   1.0   4.3e-30   7.8e-27       5     103 .]      32     131 ..      29     131 .. 0.98
   2 ?    4.4   0.0     0.022        39      55      87 ..     419     450 ..     407     459 .. 0.82

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 4.3e-30
                 HHHHHHHHHHHHHHSTT.HHHHHHCC--GGGSSSHHHHHHHHHHHHHHHTTTS-SHHHHHHHSCSSS-GGHGT.HHHHHHHHHC-S-CCCHHHHHHHHH CS
        DnaB   5 sieaEqavLgalLldpe.aidevadilkpedFyepahrliFeailelyekgepiDlvtvkeelekkgkledvggaaylaelvaavpsaanieeyaeivk 102
                 s eaE+a+Lg +L++pe  +d++ + l+ edFy pahr++Feai+el+ k+++iDl+tv+++l ++++ e++ggaa la+lva+ ++  n+e+y++i+k
  CCG93227.1  32 SAEAEKALLGLMLTNPElVFDQIRERLTVEDFYIPAHRILFEAISELHAKKIAIDLTTVHQYLVDHHLDEKIGGAALLADLVASFATHLNLESYIKILK 130
                 679**************99******************************************************************************99 PP

                 H CS
        DnaB 103 e 103
                 e
  CCG93227.1 131 E 131
                 7 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.022
                 TS-SHHHHHHHSCSSS-GGHGT.HHHHHHHHHC CS
        DnaB  55 epiDlvtvkeelekkgkledvggaaylaelvaa 87 
                 + +D+v++ ++le+++ + dv+++ yl++++++
  CCG93227.1 419 QDADVVILLHRLESDSVT-DVTKIPYLIHVAKQ 450
                 789*********999876.7799****999876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0     3e-14   5.4e-11      20     190 ..     211     396 ..     203     400 .. 0.81

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 3e-14
      AAA_25  20 pprrwlvkgllpagelallaGapgtGKttlaldlalava......tGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal............rdd 100
                 ++++++  g+   g+ ++la++pg+GKt+l l  a+  +      t + w +        V + s+E+++ ++  Rl a+                +  
  CCG93227.1 211 HHLDQITTGW-QNGDMIVLAARPGVGKTALGLTFACRALkerydqTKDLWIK----PGYSVGFFSLEMTAVQIMLRLLAAIGSEslqkirrgelepASL 304
                 5677788899.78**************************9888765555555....588*****************99987333358889999876555 PP

      AAA_25 101 arllvldlagv.eslpLfakdrggtlltadvdaleaaieevegvrlvviDplsralgg....densnsdvgalvealeriarrtgaavllvhHvg 190
                 ++l+ l  a+  ++ p + +d+ + ++ +  +a +++++   gv+l++iD l+ +++      en++ +++++   ++ +a+++++ ++++ +++
  CCG93227.1 305 EKLRML--ADDaKEWPFYIDDSSDLTIHQL-RAKARRMKNQFGVDLIIIDYLQLLHSDsqqaKENRQVEISEISRGIKALAKELNIPIIVLAQLN 396
                 555555..4444799999999999888765.677888888889***********9999885555555556***************9999988776 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.11     2e+02     110     134 ..      70      94 ..      55     102 .. 0.86
   2 !   23.8   0.3   1.4e-08   2.5e-05       1     186 [.     206     418 ..     206     463 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.11
      ATPase 110 elaeaikeikakrvviDsitglaye 134
                  l eai+e++ak++ iD  t+++y 
  CCG93227.1  70 ILFEAISELHAKKIAIDLTTVHQYL 94 
                 57799************99998765 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.4e-08
      ATPase   1 vktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaeky...........gepgvfvtveepaedlren.akslGwdlekleeegklaiid 87 
                 ++tg + lD+i+  G  +g ++ ++  pG GKt ++l+F+ + +++            g+ + f ++e +a+++  +  +++G +  +  ++g+l    
  CCG93227.1 206 IPTGFHHLDQIT-TGWQNGDMIVLAARPGVGKTALGLTFACRALKERydqtkdlwikpGYSVGFFSLEMTAVQIMLRlLAAIGSESLQKIRRGELEPAS 303
                 69*********7.9**************************99987633333444444488899999999998776551679999988888888887665 PP

      ATPase  88 asesaeesaee.........kdkedleelieelaeaikeikakrvviDsitgl.ayeekeavaRe....ilrqlvrvl.kklgvTailvsekss.seea 170
                 + + +     +         ++   +++l ++ +++ +++++  ++iD ++ l + ++++++ R+    ++ + ++ l k+l++  i  ++ +   ee+
  CCG93227.1 304 LEKLRMLADDAkewpfyiddSSDLTIHQLRAKARRMKNQFGVDLIIIDYLQLLhSDSQQAKENRQveisEISRGIKALaKELNIPIIVLAQLNRrMEEG 402
                 555554433334499999766667789999999999999999********9997777777777753222344555566688888888888876665666 PP

      ATPase 171 aggygveefivdgviv 186
                  +++++ +   +g+i 
  CCG93227.1 403 RSEPALHHLRESGAIE 418
                 6666666655555554 PP

>> DnaG_DnaB_bind  DNA primase DnaG DnaB-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.7   3.9e-07    0.0007       2      72 ..      37     115 ..      36     169 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.9e-07
  DnaG_DnaB_bind   2 realallLqhPela.gelpdalaleafedpglallreliealaaepel....ntaa..Llerlrgtp..eeallaeLave 72 
                     + +l l+L +Pel+  ++ + l+ e+f +p++++l e+i  l+a+ ++    +t++  L+++  + +   +alla L++ 
      CCG93227.1  37 KALLGLMLTNPELVfDQIRERLTVEDFYIPAHRILFEAISELHAK-KIaidlTTVHqyLVDHHLDEKigGAALLADLVAS 115
                     5799*********9999*************************775.444788666669***9999888899999998875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.9e-06     0.018       5     105 ..     223     360 ..     218     398 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.9e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee........erpevvfvtlpsst.sskdllrellralglelka........................ 70 
                   ++v+ + +G+GKT l  +++ ++ +e + ++              +v   s++ +  +++ +ll a+g+e                           
  CCG93227.1 223 GDMIVLAARPGVGKTALGLTFACRALKERYDQTkdlwikpgY-----SVGFFSLEmTAVQIMLRLLAAIGSESLQkirrgelepasleklrmladdake 316
                 6799**********9998777766544433333366644332.....444444444677787778888887777778889999999999999******* PP

      AAA_22  71 ...erlsseell.ealeqalrarav...ielliiDEaqhlr..s 105
                    + ++s++l  ++l+  +r+ +    + l+iiD  q l   s
  CCG93227.1 317 wpfYIDDSSDLTiHQLRAKARRMKNqfgVDLIIIDYLQLLHsdS 360
                 ***88888888888888888888888889*********996542 PP

>> ICAT  Beta-catenin-interacting protein ICAT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00015      0.27      36      73 ..     130     167 ..     126     169 .. 0.95
   2 ?   -2.3   0.0       3.1   5.5e+03       9      31 ..     410     432 ..     407     434 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
        ICAT  36 eEeafLekhssaslsqfekVsenlasgdkvLavAgsqv 73 
                 +E+++L++  sa+l  ++++ en+ s ++vL+ A++q+
  CCG93227.1 130 KEKSILRRLHSAALTIVQNIYENSHSVSQVLDQAEKQI 167
                 5999********************************98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.1
        ICAT   9 klskdayiqQkveILtaLkkLge 31 
                 +l ++ +i+Q   + + L +L++
  CCG93227.1 410 HLRESGAIEQDADVVILLHRLES 432
                 677888999*9999999999975 PP

>> Lipase  Lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     7e-05      0.13      89     145 ..     332     388 ..     313     391 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7e-05
                 HHHHHHHHHTT--EEEEEEE-HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHH--- CS
      Lipase  89 lsklvkalekvekvnvivvdwksgsealyaqavenirvvgaevakllseLeeelnys 145
                 l    + ++++  v++i++d+ +  ++  +qa en +v   e+++ +++L++eln +
  CCG93227.1 332 LRAKARRMKNQFGVDLIIIDYLQLLHSDSQQAKENRQVEISEISRGIKALAKELNIP 388
                 4455667888899*****************************************987 PP

>> HcyBio  Homocysteine biosynthesis enzyme, sulfur-incorporation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00013      0.23      86     165 ..      99     174 ..      67     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00013
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
      HcyBio  86 eeeeyGGghviedLvagkeveleaeaketdcyprkeieteitlddlneailvnpRnayqnYnaavNssee...tiytymgelk 165
                  +e+ GG+ ++ dLva    +l+ e++       k ++++  l +l++a l+   n+y n +++    ++   +i++ +++l 
  CCG93227.1  99 LDEKIGGAALLADLVASFATHLNLESYI------KILKEKSILRRLHSAALTIVQNIYENSHSVSQVLDQaekQIFE-ITDLA 174
                 45699**********************9......69999999*****************988766555544448887.66665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.35   6.3e+02      67     142 ..     103     179 ..      97     190 .. 0.57
   2 ?    6.9   0.1    0.0026       4.7      45      74 ..     221     250 ..     172     260 .. 0.83
   3 ?    2.7   0.1      0.05        90     100     128 ..     336     364 ..     324     373 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.35
   IstB_IS21  67 lgveavraglsvlfvrvedLveelkrarrdgklaralkrllkvdllilDdl.....gllpldqaeaellfeviekryerrs 142
                 +g +a  a+l  +f +  +L + +k+ ++    +++l+rl  ++l i+ ++     ++ ++ +++++++fe+ + ++ r++
  CCG93227.1 103 IGGAALLADLVASFATHLNLESYIKILKE----KSILRRLHSAALTIVQNIyenshSVSQVLDQAEKQIFEITDLAVTRST 179
                 55556666666666665555555555444....445555555555555554221125556666778888888877776654 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0026
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavra 74 
                 ++ + ivl   +GvGK+ l  +++ +a ++
  CCG93227.1 221 QNGDMIVLAARPGVGKTALGLTFACRALKE 250
                 567889*****************9999876 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.05
   IstB_IS21 100 aralkrllkvdllilDdlgllpldqaeae 128
                 ar++k+   vdl+i+D l ll+ d+++a+
  CCG93227.1 336 ARRMKNQFGVDLIIIDYLQLLHSDSQQAK 364
                 4667777889***********99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 3412.23
//
Query:       CCG93228.1  [L=264]
Description: Thiazole synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   9.7e-105  349.3   1.0   1.1e-104  349.1   1.0    1.0  1  ThiG          Thiazole biosynthesis protein ThiG
      5e-05   22.9   0.3    0.00086   18.8   0.1    2.2  2  His_biosynth  Histidine biosynthesis protein
     0.0036   16.3   0.4     0.0069   15.4   0.4    1.4  1  IMPDH         IMP dehydrogenase / GMP reductase domain
     0.0055   15.9   0.4      0.028   13.6   0.1    2.2  3  NanE          Putative N-acetylmannosamine-6-phosphate epimer
     0.0068   15.6   0.8      0.051   12.7   0.2    2.2  2  DUF561        Protein of unknown function (DUF561)
     0.0098   15.3   1.4      0.015   14.7   1.4    1.2  1  NMO           Nitronate monooxygenase
  ------ inclusion threshold ------
      0.013   14.5   0.1      0.028   13.5   0.0    1.6  2  FMN_dh        FMN-dependent dehydrogenase
       0.13   11.3   1.5          1    8.4   0.2    2.3  3  Dus           Dihydrouridine synthase (Dus)


Domain annotation for each model (and alignments):
>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.1   1.0  4.9e-108  1.1e-104       2     247 .]      12     257 ..      11     257 .. 0.99

  Alignments for each domain:
  == domain 1  score: 349.1 bits;  conditional E-value: 4.9e-108
                 ETTEEES--EEEE-STSSSHHHHHHHHHHHT-SEEEEECCGSTTTS.TTS--CCCCCHCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BC CS
        ThiG   2 iagkefksrlllGtgkykslevlkeaveasgaeivtvalrRvnleekaseeellelleekevtllPntaGaktaeeAvriarlarevletdliklEvia 100
                 iagk+f+srll+Gtgk+ s+ ++++a+easg++ivtvalrRv+++++++ee++l++++++++ ++ nt+Ga +aeeA+ria++a ++   ++iklE+++
  CCG93228.1  12 IAGKHFQSRLLIGTGKFGSHLQMAQALEASGSQIVTVALRRVEIGSHKKEEDILSFIDSEKYLIVINTSGAMDAEEAIRIAKIAEKAGLPKWIKLEIHP 110
                 89************************************************************************************************* PP

                 ETTTTEB-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTS----S-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-S CS
        ThiG 101 dektLlPdvvetlkaaeiLvkeGFevlpYvsdDlvlarrleevGcaavmPlaapiGsglGllnkealkiiieeakvPvivDAGigspsdaaqamelGad 199
                 d ++LlPd++etlka+e+Lvk+GF+vlpY+++D+vla+rleevG aavmPl++piGs +Gl+++ +l+iiie+a+vPvi+DAGig+ps+aa ame+Gad
  CCG93228.1 111 DPRYLLPDPIETLKATEQLVKDGFVVLPYINADPVLAKRLEEVGSAAVMPLGSPIGSMRGLETRSQLEIIIEQANVPVIIDAGIGKPSHAALAMEMGAD 209
                 *************************************************************************************************** PP

                 EEEESHHHHTSSSHHHHHHHHHHHHHHHHHHHHH------SS-XTTST CS
        ThiG 200 avllntavaeakdpvamArafklaveaGrlaylagriekrevasassp 247
                 +vl+nta+a a+dp +mA afk av aGr+ay+ g  +++++a a+sp
  CCG93228.1 210 GVLINTAIAIAEDPLQMALAFKNAVVAGRIAYEYGSGQASKFAMATSP 257
                 **********************************************98 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.059   1.3e+02      98     170 ..      20     109 ..       9     112 .. 0.72
   2 !   18.8   0.1   3.8e-07   0.00086      64     112 ..     176     224 ..     165     249 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.059
                   EEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEE....C.............EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETT CS
  His_biosynth  98 kviigtaavknpelikelaekfgsqkivvaiDarr....g.............ykvaikgwreetgldavelakkleelgageilltdid 170
                   ++ igt  + +   + +++e+ gsq ++va+   +    +             y ++i++   + + +a+ +ak +e++g+ + +  +i+
    CCG93228.1  20 RLLIGTGKFGSHLQMAQALEASGSQIVTVALRRVEigshKkeedilsfidsekYLIVINTSGAMDAEEAIRIAKIAEKAGLPKWIKLEIH 109
                   667777777777778888888888888888874446444044555556666667888888888888888888888888888888777776 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 3.8e-07
                   HHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THHH CS
  His_biosynth  64 lveeiaeevfipvqvGGGIrsledveelleagadkviigtaavknpeli 112
                    +e i+e+ ++pv ++ GI + ++++ ++e+gad v i+ta +   + +
    CCG93228.1 176 QLEIIIEQANVPVIIDAGIGKPSHAALAMEMGADGVLINTAIAIAEDPL 224
                   4577899999999999999999999999999999999999955444434 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   3.1e-06    0.0069     203     244 ..     181     222 ..     172     260 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.1e-06
                 HCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 203 akkagvpviaDGGikysgdivkAlaaGadavmlGsllagteE 244
                  ++a+vpvi D Gi +  + + A+ +Gad v++   +a  e+
  CCG93228.1 181 IEQANVPVIIDAGIGKPSHAALAMEMGADGVLINTAIAIAED 222
                 6789*****************************999986554 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.86   1.9e+03     148     172 ..      23      48 ..       8      63 .. 0.65
   2 ?   -1.0   0.0      0.39   8.7e+02     155     176 ..     143     165 ..     123     180 .. 0.72
   3 !   13.6   0.1   1.3e-05     0.028     140     179 ..     181     220 ..     167     235 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.86
                 EEES---SHHHHHHHHT.T--SEEEE CS
        NanE 148 iaeGrintPekakkaie.iGvdavvv 172
                 i  G++ +  + ++a+e +G + v+v
  CCG93228.1  23 IGTGKFGSHLQMAQALEaSGSQIVTV 48 
                 55666666666555554145555555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.39
                 SHHHHHHHHTT--SEEE.E-HHH CS
        NanE 155 tPekakkaieiGvdavv.vGsai 176
                  P +ak+  e+G +av+ +Gs i
  CCG93228.1 143 DPVLAKRLEEVGSAAVMpLGSPI 165
                 59999999999988875367766 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 1.3e-05
                 HHHTT--EEEES---SHHHHHHHHTT--SEEEE-HHHH-H CS
        NanE 140 lseaglkviaeGrintPekakkaieiGvdavvvGsaitrl 179
                 + +a++ vi++  i  P +a+ a+e+G+d v + +ai+  
  CCG93228.1 181 IEQANVPVIIDAGIGKPSHAALAMEMGADGVLINTAIAIA 220
                 57899*******************************9754 PP

>> DUF561  Protein of unknown function (DUF561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.11   2.4e+02       4      40 ..      63      99 ..      58     109 .. 0.89
   2 !   12.7   0.2   2.3e-05     0.051     177     229 ..     176     229 ..     167     240 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.11
      DUF561  4 klssdlekkkaikvisGlnnfnveqvlkiaraaekak 40
                 + s+++  k + vi     ++ e+ ++ia+ aeka 
  CCG93228.1 63 DILSFIDSEKYLIVINTSGAMDAEEAIRIAKIAEKAG 99
                47889999999****9999************999985 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.3e-05
      DUF561 177 styeiskkvslPvicasGlsd.vtvplalslgasGiGigsavsklndeeemval 229
                     i ++ ++Pvi  +G+ + + + la+++ga G+ i  a+   +d  +m  +
  CCG93228.1 176 QLEIIIEQANVPVIIDAGIGKpSHAALAMEMGADGVLINTAIAIAEDPLQMALA 229
                 555688999**********8825589****************999998888765 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   1.4   6.9e-06     0.015     135     230 ..     132     222 ..     120     237 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.9e-06
         NMO 135 agvvliptissv.kearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqigtrfLltke 230
                  g v++p i +    a+ +e+ G  a+   G+  G ++G  e     + + ++ + +  ++Pvi   Gi +    a a+ +GA gv i t+  ++++
  CCG93228.1 132 DGFVVLPYINADpVLAKRLEEVGSAAVMPLGSPIGSMRG-LE-----TRSQLEIIIEQANVPVIIDAGIGKPSHAALAMEMGADGVLINTAIAIAED 222
                 5666666665541347889999*99**************.33.....3445566777779*******************************988876 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.77   1.7e+03      71      93 ..      82     104 ..      75     115 .. 0.66
   2 ?   13.5   0.0   1.2e-05     0.028     208     299 ..     177     213 ..     116     221 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.77
                 GTSTTHHHHHHHHHHHHTS-EEE CS
      FMN_dh  71 lahpdgelalaraaakagipfvl 93 
                 +++++  + +a+ a+kag+p ++
  CCG93228.1  82 AMDAEEAIRIAKIAEKAGLPKWI 104
                 45555556666666666666544 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEE CS
      FMN_dh 208 ikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavll 299
                 ++ + eq +                                                       ++v++D Gi + s+++ A+ +GAd+vl+
  CCG93228.1 177 LEIIIEQAN-------------------------------------------------------VPVIIDAGIGKPSHAALAMEMGADGVLI 213
                 444444444.......................................................6666666666666666666666666665 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.06   1.4e+02     140     160 ..      31      51 ..      20      69 .. 0.84
   2 ?   -3.0   0.0       1.3   2.9e+03     137     152 ..      85     100 ..      77     104 .. 0.78
   3 ?    8.4   0.2   0.00046         1     176     213 ..     178     214 ..     168     240 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.06
                 HHHHHHHHHHCT-SEEEEESS CS
         Dus 140 alelakiveaaGaqaltvHgR 160
                 +l++a+++ea+G q +tv  R
  CCG93228.1  31 HLQMAQALEASGSQIVTVALR 51 
                 799**************9655 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
                 TC.HHHHHHHHHHCT- CS
         Dus 137 eenalelakiveaaGa 152
                  e+a+++aki+e+aG 
  CCG93228.1  85 AEEAIRIAKIAEKAGL 100
                 4568999999999995 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00046
                 HHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEES CS
         Dus 176 kevkqavsipviaNGdIkdaedaqaileetGadgvmig 213
                 + + ++ ++pvi+  +I +++ a  ++e  Gadgv+i 
  CCG93228.1 178 EIIIEQANVPVIIDAGIGKPSHAALAMEM-GADGVLIN 214
                 5688999*****************99999.******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1939.48
//
Query:       CCG93229.1  [L=282]
Description: Predicted periplasmic solute-binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-72  243.0   0.0    4.4e-72  242.8   0.0    1.0  1  VitK2_biosynth  Menaquinone biosynthesis


Domain annotation for each model (and alignments):
>> VitK2_biosynth  Menaquinone biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.8   0.0   2.4e-76   4.4e-72       1     265 [.       6     267 ..       6     268 .. 0.97

  Alignments for each domain:
  == domain 1  score: 242.8 bits;  conditional E-value: 2.4e-76
                     EEEEEESSHHHHHHHHHHHTTSS..SGCCEEEEEE-HHHHHHHHHTTS-SEEEEEHHHHTTCTTTEEEESEESCEEEESSSSEEEEESS-CCC-S CS
  VitK2_biosynth   1 lrlGhspylNdlflfyaLvegkvdsegleveivledpetlnrallegelDvakiSsaayariaddyalLpdlsisalGrvygvllvskvpleele 95 
                     ++lGhsp+++d+f+fya+ ++k+++++  +++++ d+etln+ + ++++D++++S++ay + a++y l++  +++++G++yg+ l++k+ ++++e
      CCG93229.1   6 ISLGHSPDADDAFMFYAISKKKISTHNYVFKELIVDIETLNNLAFSEKIDLTALSIYAYCKGAKNYLLMS--CGASMGEGYGPRLIAKQYFDKKE 98 
                     68********************************************************************..***************99555544 PP

                     SS..T.EEEESTTTSHHHHHHHHHHCSTS----EEEEE-GGGHHHHHHTTS.SEEEEECCHHHTGGGGTTEEEEEHHHHHHHHHSS-EEEEEEEE CS
  VitK2_biosynth  96 gel.gkrvalpgestTsvlLlrlllaeryglkprlvevpfdeieaavlege.dagLlIgesaltyaeeglkkvlDLgelWeeltglPlvlglwvv 188
                         +k++a+pg +t+++l l l++ +r   + +l ++pfd+i ++v++g+ d+gL+I+e++l y  egl+ + DLg++W++ tglPl+lg+++v
      CCG93229.1  99 --MvDKKIAVPGLNTSACLALSLYFGKR-PTELNLLVCPFDKIFDMVKSGSaDVGLIIHEGQLSYVLEGLVLCEDLGKWWRQSTGLPLPLGGNAV 190
                     ..56************************.7999************************************************************** PP

                     ECCCHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHCCSTTS.HHHHHHHHHHHCSHHHHS-CHHHHHHHHHHHHHHH CS
  VitK2_biosynth 189 rrdlaaeaakeleealreSveyalahldevaeyaaeraqemddevlekhlelYvnelsydlgeegragleeflelaa 265
                     rr+l+ e ++el+ +++eS+++al+++de+++ya++ ++  + +++++++ +Yvne ++d+g+eg+a++ ef e+++
      CCG93229.1 191 RRSLGMERCRELQSIVKESIRWALENRDEAISYARKFSRGSQASMIDEFVGMYVNERTLDYGQEGKAAVSEFIERGK 267
                     *****************************************99******************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1952.63
//
Query:       CCG93230.1  [L=314]
Description: Deacetylase family enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-92  309.2   0.0    5.1e-92  308.6   0.0    1.2  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.6   0.0   2.8e-96   5.1e-92       1     307 []      22     311 ..      22     311 .. 0.95

  Alignments for each domain:
  == domain 1  score: 308.6 bits;  conditional E-value: 2.8e-96
                    SCCGTHHHHHHHHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   1 hpenpkRlsaileslaesvglldelelliqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavg 96 
                    hp  p+R+s++l +l+++ g   +  l i+ps+a+ +++l vH++eY+e++++++    + +             l  +dt+++  ++++allavg
     CCG93230.1  22 HPDAPNRISSVLPKLKDAFG---DSLLWIEPSPASLDWVLSVHTPEYVEKVKKTQIV--PMV-----L-------LDWGDTYAHGPSFDVALLAVG 100
                    8999*************866...44567************************86533..333.....1.......23478**************** PP

                    HHHHHHHHHHTTSSSEEEETTSS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-CCTSTTS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  97 avleavdavlsgsvkaafvlvrPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafysdpdvltlSiHryegifyPg 192
                    a+leavd+v+++++k+af+lvrPpgHHa ++ a+GFC++N v ia++y+ +++++kr++ilD+DvHhGnGt+++fy+dp+v+++S+H++   +yPg
     CCG93230.1 101 AALEAVDKVITKQIKNAFCLVRPPGHHALPNSAMGFCIFNTVGIAARYAIKNYGIKRILILDWDVHHGNGTQDIFYEDPQVYFISLHQF--PYYPG 194
                    ****************************************************************************************5..56*** PP

                    S--TT---SGGGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-.G..EEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxx RF
  Hist_deacetyl 193 tgaledlgegkgkgfnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkv.k.kvvll 286
                    tg+++d+g+g+g+g+++n+ +++g +d+ey+++f++ + p++ ++kP++i +saGfDa+k+dplge++l+++gy+ +t+ l++ a+k+ + k++++
     CCG93230.1 195 TGKASDIGKGAGEGYTMNICMHRGATDKEYVEAFHTKVLPAIDKYKPEIIFISAGFDAHKDDPLGEICLTEQGYETMTQLLKNAAQKHcEgKIISV 290
                    ****************************************************************************************999***** PP

                    E-S---HHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 287 leGGYnlealaravtavlsal 307
                    leGGYn+e+l ++++++l+al
     CCG93230.1 291 LEGGYNTESLYNSIKSHLKAL 311
                    **************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2399.94
//
Query:       CCG93231.1  [L=74]
Description: hypothetical protein MFUM_960012 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0089   16.1   0.0      0.011   15.8   0.0    1.1  1  Y1_Tnp    Transposase IS200 like


Domain annotation for each model (and alignments):
>> Y1_Tnp  Transposase IS200 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   6.1e-07     0.011      80     120 ..      30      70 ..      22      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.1e-07
      Y1_Tnp  80 nkefpelkkkklkkeslWqrgYfvstvgeasletvkrYIen 120
                 +k+fp+lk+  +++e+l +++Y+v t+ ++s+e+++r I +
  CCG93231.1  30 RKRFPKLKNIGYRREHLRTQSYYVGTAWTVSAEVTRRFIAE 70 
                 789***********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.52
# Mc/sec: 430.69
//
Query:       CCG93232.1  [L=41]
Description: hypothetical protein MFUM_960013 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       129  (0.00719505); expected 358.6 (0.02)
Passed bias filter:                      122  (0.00680462); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 294.09
//
Query:       CCG93233.1  [L=184]
Description: Cytochrome c family protein (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0027   18.0   0.0      0.018   15.4   0.0    2.1  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
  ------ inclusion threshold ------
      0.021   15.9   0.2      0.097   13.8   0.1    2.1  2  Cytochrom_C      Cytochrome c


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     2e-06     0.018       3      67 .]      55     158 ..      53     158 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2e-06
  Cytochrome_CBB3   3 aaaGaalykk..nCasCHg.kggag............................pslagr..dwepdalvdiiknGk...g.....aMpafggql 55 
                      ++ G++l ++   Ca CH+  + +g                             sl g   +w+++ +v++++ G+   g      Mp+++  +
       CCG93233.1  55 IQHGKYLVEAvaLCAECHTpRDSNGqlimdkwlqgsplqwvdqsgqkewasyaRSLVGLpeGWKESDMVQYLETGIlprGgysrlPMPPYR--M 146
                      5678888887779******655555778888888877777777777666555544444344777799999999997665234434599996..6 PP

  Cytochrome_CBB3  56 sdeelwalvaYl 67 
                      s +++ a+  Yl
       CCG93233.1 147 SHKDALAITLYL 158
                      888888887776 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.81   7.2e+03      51      71 ..      36      56 ..      22      68 .. 0.62
   2 ?   13.8   0.1   1.1e-05     0.097       4      91 ..      58     161 ..      55     162 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.81
                 TSS--SSSHHHHHHHGGGGGG CS
  Cytochrom_C 51 aavsaprddfekkkltaempa 71
                  +++ p ++++  ++t+em++
   CCG93233.1 36 SQSQPPPVKQTSTTKTGEMIQ 56
                 344444555555555555554 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.1e-05
                  HHHHH.H.TTGGGTB-SSSBSSS...........................--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT- CS
  Cytochrom_C   4 Gkelf.t.anCaaCHgvegggakqgg.......................gptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerl 76 
                  Gk l+ + a Ca CH++++   +  +                       ++ l g+ e + ++  +++ + +    +pr +  + +    mp++  r+
   CCG93233.1  58 GKYLVeAvALCAECHTPRDSNGQLIMdkwlqgsplqwvdqsgqkewasyARSLVGLPEGWKESDMVQYLETG---ILPRGGYSRLP----MPPY--RM 146
                  7777744568*****998887665555677766666554444444444444444444444444444444444...23333333333....5555..9* PP

                  -HHHHHHHHHHHHTT CS
  Cytochrom_C  77 teqeiadlaaYLksl 91 
                  + +++ +++ YL sl
   CCG93233.1 147 SHKDALAITLYLESL 161
                  ************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1243.64
//
Query:       CCG93234.1  [L=301]
Description: Homoserine kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-11   42.8   0.1    1.2e-10   41.4   0.0    1.8  2  GHMP_kinases_N  GHMP kinases N terminal domain
    0.00029   21.1   0.0    0.00074   19.8   0.0    1.7  1  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   1.4e-14   1.2e-10       2      66 .]      80     140 ..      79     140 .. 0.83
   2 ?   -2.7   0.0      0.84   7.5e+03      25      47 ..     266     282 ..     248     286 .. 0.50

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1.4e-14
                     EEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHHHHHHHHHH.HHHHHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N   2 ivikseiPvgaGLGSSAAlavalvaAllallglsleeaklaleae.rlaqggngsggDvaasvyGg 66 
                     +++ks iP ++GLGSSA++ ++++a l+al g+s     l  e   ++a   +g++++v+++++Gg
      CCG93234.1  80 WSVKSQIPQARGLGSSASIRLGILAGLNALSGNS-----LKREELlEIASELEGHPDNVTPALFGG 140
                     689*****************************55.....544444344444558***********8 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.84
                     HHHHHHHTTEHHHH.HHHHHHHHH CS
  GHMP_kinases_N  25 vaAllallglslee.aklaleaer 47 
                     v+Al +       e +kl++ +e 
      CCG93234.1 266 VLALKE-------ElLKLGIPGEI 282
                     222222.......13666666665 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   8.3e-08   0.00074      21      82 ..     219     272 ..     203     275 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 8.3e-08
  GHMP_kinases_C  21 qrselkavvgilppeleellealselGalgaklsGaGgGptvfalfkdkdeaeqvaralree 82 
                     ++  +  ++ +  p  e+l +  +++Galg+ lsG+  G+t+  l+    +  +v++al+ee
      CCG93234.1 219 HE--P--YRLPAIPFWEKLRDTSLKAGALGFYLSGS--GSTLMSLA--YKNPTNVVLALKEE 272
                     44..7..88899999*********************..*******9..44447788888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2219.88
//
Query:       CCG93235.1  [L=236]
Description: Membrane associated serine protease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-24   85.4  12.7    3.9e-24   85.4  12.7    1.8  2  Rhomboid  Rhomboid family
  ------ inclusion threshold ------
        1.7    8.9   2.6         14    6.0   0.7    2.3  2  MAP17     Membrane-associated protein 117 kDa, PDZK1-interact


Domain annotation for each model (and alignments):
>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.3      0.17   1.5e+03     105     119 ..      30      44 ..       8      58 .. 0.56
   2 !   85.4  12.7   4.4e-28   3.9e-24       3     145 ..      63     224 ..      61     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.17
                 ..CCCCCCCCCCHHH CS
    Rhomboid 105 lllllfillnlvlgl 119
                 ++l+++ ++++++ +
  CCG93235.1  30 TFLFIVYFIQITFLF 44 
                 233333333333333 PP

  == domain 2  score: 85.4 bits;  conditional E-value: 4.4e-28
                 GCC-TTHHHHGGG--..SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S....-EESSHHHHHHHHHHHHHHHHCCCCGS- CS
    Rhomboid   3 krgelwrlltsmflH..agwlHllfNmlallvfGsplerrlGslrflllyllsglagsllsllfsaeses.plvGaSGaifgllgallvlvprnrkllr 98 
                 ++g++w++lt++flH  ++ lHll N++a++++G++le++lG++r++ll++ +++ag+++ ++f    ++  l+GaSG++f++l a+++   + + +  
  CCG93235.1  63 AHGKIWEFLTYAFLHdeLEPLHLLTNAIAIYFLGNQLEKVLGHFRLALLFIGGAIAGGMGWYFFGGPIHEpGLIGASGVVFSFLLAFAFCLQEIWVRSL 161
                 6799***********555789*******************************************999888579****************9999999999 PP

                 ---HC...................CCCCCCCCCCHHHCTSSSTTTHHHHHHHHHHHHHHHHHH CS
    Rhomboid  99 kliia................llllllfillnlvlgllpraggvsnlAHlgGllaGlllglll 145
                 ++  +                 +++l+f++++++  ++   +g s+ AHl+G+++G+l+++l+
  CCG93235.1 162 TFHYDiqsnrfifnptfflsiQVVVLIFVIFEAICLVFDIPTGSSHTAHLAGAIFGYLYVRLW 224
                 9999999****999888877766666677777777777666999***************9886 PP

>> MAP17  Membrane-associated protein 117 kDa, PDZK1-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.7    0.0015        14      28      48 ..      20      38 ..      13      46 .. 0.84
   2 ?    2.2   0.0     0.022   1.9e+02      39      58 ..     141     160 ..     131     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0015
       MAP17 28 lkPWlvGliAvvgFLflvfvl 48
                  PWl+   A+v FLf+v+ +
  CCG93235.1 20 TLPWLT--QALVTFLFIVYFI 38
                579997..7*********865 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.022
       MAP17  39 vgFLflvfvlllvnrvWcsk 58 
                 v+F fl + ++  + +W + 
  CCG93235.1 141 VVFSFLLAFAFCLQEIWVRS 160
                 78***************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1589.69
//
Query:       CCG93236.1  [L=294]
Description: Nicotinate-nucleotide pyrophosphorylase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-48  163.7   0.0    4.8e-48  163.1   0.0    1.3  1  QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal
    4.5e-28   97.2   0.0    1.7e-27   95.3   0.0    1.9  2  QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal


Domain annotation for each model (and alignments):
>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.1   0.0   5.3e-52   4.8e-48       1     169 []     119     292 ..     119     292 .. 0.89

  Alignments for each domain:
  == domain 1  score: 163.1 bits;  conditional E-value: 5.3e-52
                 HHHHHHHHHHHHHCTSSEEEE-S---TTTHHHHHHHHHHTTSB--TSSTTTSEEE-HHHHHHHSS.........HHHHHHHHHHHHTTTSEEEEEESSH CS
   QRPTase_C   1 iAtltarmveaaksakvrildTRkttPglrllekyAvliGGgdnhrlgLsdmvlikdnhiaaags.........iveavksvreavdkevkievevesl 90 
                 iAtlt r+ve +++ k++ildTRkt+Pglr l+kyAvl+GGg+nhr++Lsd +likdnh++++           ++e ++ +r++ +   +ie+e+++l
  CCG93236.1 119 IATLTYRFVEVLRESKTKILDTRKTLPGLRFLQKYAVLCGGGANHRYSLSDHILIKDNHLSLIRRkmgeswlewLQEKITIIRQHKPLV-RIEIETKTL 216
                 9**********************************************************998765555574444444444444444333.4******** PP

                 HHHHHHHHHT-SEEEEES--HHHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB----EEEE CS
   QRPTase_C  91 eeleevleaeadiimLDnfsveelkkaveelkeknkrvlievSGgvtlenveeyaksgvdvisvgalthsvkalDislk 169
                 eel  +    +diimLDn++ +++ + ++++   n++ l+evSG v+le+++++a+ gvd++s+g lths++a+D+s++
  CCG93236.1 217 EELSCICTLSPDIIMLDNMELNQISEGMKII---NHKALVEVSGRVNLEKLQAVARLGVDFVSLGLLTHSAQAVDVSMD 292
                 *************************999955...66679**************************************97 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.0   1.9e-31   1.7e-27       1      89 []      28     117 ..      28     117 .. 0.99
   2 ?   -1.4   0.0      0.28   2.5e+03      51      71 ..     239     259 ..     231     267 .. 0.86

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 1.9e-31
                 CTT--HHHHHHGCTTSEEEEEEEESSSEEE-SHHHHHHHHHHH.TTTEEEESS-TT-EEETTEEEEEEEEEHHHHHHHHHHHHHHHHHHH CS
   QRPTase_N   1 igrgDlttealipeekkakaeiiakeegvvaGlevaeevfell.pglevellvkDGervekgdvlleieGnarallsaERvaLnllqrlS 89 
                 ig+gDlt+  +ip+++kaka+ii +ee+v++Gleva +vf+++ p+l++  l+ DG++vek++ ++ei+Gna++ll++ERvaLn+l++l+
  CCG93236.1  28 IGNGDLTSSLFIPRNEKAKAHIIVREEAVLSGLEVACQVFSYIdPSLRCVSLFMDGQKVEKNTPIIEISGNAQTLLMGERVALNFLSHLC 117
                 689*************************************************************************************97 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.28
                 SS-TT-EEETTEEEEEEEEEH CS
   QRPTase_N  51 lvkDGervekgdvlleieGna 71 
                 ++++G ++ +++ l+e++G++
  CCG93236.1 239 QISEGMKIINHKALVEVSGRV 259
                 578999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1854.61
//
Query:       CCG93237.1  [L=266]
Description: PATAN domain containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.001   19.3   0.0     0.0022   18.2   0.0    1.6  1  DUF4388   Domain of unknown function (DUF4388)


Domain annotation for each model (and alignments):
>> DUF4388  Domain of unknown function (DUF4388)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.2e-07    0.0022       2      89 ..       4     105 ..       3     107 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.2e-07
     DUF4388   2 GnLsefsltellqllelsrktGvLeiespge.eariffrdGrivyA..............ealfdllswkeGtFrfeqdaalaeetir..lslenllle 83 
                 G++++++l+++++++  ++k+GvLei+sp++  +++ f ++    A                l +l + +e +F f++ +  +e++++  l++ +l++ 
  CCG93237.1   4 GKIKSIPLPQIVRMI--GEKSGVLEIKSPENtLYSFRFSRRLFLGAkkqdmpiedtfelkSMLLELSQKEESFFIFKEIEL-QEDNVSfsLPAVQLIIA 99 
                 8999**********9..689***********445566777777777********999999999999999999999998888.55555556999999998 PP

     DUF4388  84 glrrld 89 
                  l+ l+
  CCG93237.1 100 SLHSLR 105
                 887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1887.93
//
Query:       CCG93238.1  [L=187]
Description: Predicted GTPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-11   43.0   0.1    1.3e-06   28.4   0.0    2.1  2  ATP_bind_1       Conserved hypothetical ATP binding protein
    4.7e-05   22.9   0.0    7.1e-05   22.3   0.0    1.3  1  Arf              ADP-ribosylation factor family
    0.00012   22.1   0.0    0.00016   21.6   0.0    1.3  1  RsgA_GTPase      RsgA GTPase
    0.00031   20.1   0.0    0.00045   19.6   0.0    1.2  1  Septin           Septin
    0.00032   20.8   0.0    0.00048   20.2   0.0    1.4  1  MMR_HSR1         50S ribosome-binding GTPase
    0.00082   18.5   0.1     0.0012   18.0   0.1    1.1  1  IIGP             Interferon-inducible GTPase (IIGP)
    0.00089   19.0   0.1     0.0012   18.6   0.1    1.2  1  AAA_24           AAA domain
      0.002   18.3   0.0     0.0027   17.9   0.0    1.3  1  Roc              Ras of Complex, Roc, domain of DAPkinase
     0.0021   18.6   0.1     0.0027   18.2   0.1    1.5  1  AAA_18           AAA domain
     0.0028   17.6   0.1     0.0047   16.9   0.1    1.3  1  NTPase_1         NTPase
     0.0033   17.0   0.0     0.0045   16.5   0.0    1.2  1  AAA_7            P-loop containing dynein motor region
     0.0046   17.5   0.0      0.007   16.9   0.0    1.3  1  ABC_tran         ABC transporter
     0.0057   16.6   0.0      0.011   15.8   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0067   16.6   0.0     0.0094   16.1   0.0    1.3  1  AAA_33           AAA domain
     0.0069   15.5   0.0      0.019   14.0   0.0    1.6  2  T2SSE            Type II/IV secretion system protein
     0.0074   16.7   0.0     0.0081   16.6   0.0    1.5  1  AAA_16           AAA ATPase domain
     0.0091   15.7   0.0      0.016   14.9   0.0    1.4  1  AAA_29           P-loop containing region of AAA domain
     0.0099   16.1   0.0      0.025   14.8   0.0    1.8  2  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.014   15.2   0.1      0.019   14.7   0.1    1.2  1  PRK              Phosphoribulokinase / Uridine kinase family
      0.015   15.2   0.1      0.021   14.8   0.1    1.2  1  Rad17            Rad17 P-loop domain
      0.018   14.8   0.0      0.027   14.2   0.0    1.3  1  Sigma54_activat  Sigma-54 interaction domain
      0.027   13.6   0.0      0.039   13.1   0.0    1.2  1  NB-ARC           NB-ARC domain
      0.027   14.4   0.0       0.05   13.5   0.0    1.4  1  ATPase_2         ATPase domain predominantly from Archaea
      0.032   14.7   0.1      0.044   14.3   0.1    1.2  1  AAA_23           AAA domain
      0.033   14.6   0.0      0.037   14.4   0.0    1.5  1  AAA              ATPase family associated with various cellul
      0.047   13.4   0.0      0.078   12.7   0.0    1.3  1  AAA_30           AAA domain
      0.048   12.5   0.0        0.1   11.4   0.0    1.5  2  AAA_32           AAA domain
      0.049   13.9   0.0      0.091   13.0   0.1    1.5  1  AAA_28           AAA domain
      0.052   12.7   0.2      0.069   12.3   0.2    1.2  1  G-alpha          G-protein alpha subunit
      0.053   13.1   0.0      0.073   12.7   0.0    1.3  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.054   13.4   0.0        0.1   12.5   0.0    1.4  1  NACHT            NACHT domain
      0.068   13.2   0.0      0.093   12.8   0.0    1.3  1  Dynamin_N        Dynamin family
      0.074   12.0   0.1        0.1   11.5   0.1    1.2  1  DUF463           YcjX-like family, DUF463
      0.084   12.5   0.0      0.093   12.3   0.0    1.1  1  Ras              Ras family
      0.094   13.1   0.0       0.15   12.5   0.0    1.4  1  RNA_helicase     RNA helicase
       0.11   12.2   0.0       0.14   11.8   0.0    1.2  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.11   12.8   0.1       0.22   11.9   0.1    1.5  1  AAA_19           AAA domain
       0.16   11.5   0.0       0.67    9.5   0.0    1.8  2  AAA_25           AAA domain


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   0.00012     0.055       1      20 [.      23      42 ..      23      53 .. 0.85
   2 !   28.4   0.0   2.7e-09   1.3e-06      61     186 ..      52     157 ..      41     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00012
  ATP_bind_1  1 vvGpaGsGKttfvgalseil 20
                v+Gp G+GKttf++++s+  
  CCG93238.1 23 VTGPSGAGKTTFIRSISQSE 42
                89**************9865 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 2.7e-09
  ATP_bind_1  61 glgpngalvvaleflresldwldeelekeeddyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltdptkfisgllsalsamlrlelPh 159
                 + + ++ ++va+++++  ld    +      + +lf+ PGQ+++ + ++ l+        ++al+v++Lv  +  ++   ++++  +  + + +l +P+
  CCG93238.1  52 NAKGKKETTVAMDYGSLYLD----RY-----SIHLFGSPGQDRFDFTWDILR--------QGALGVIMLVGGHDPEQ-LPLLKK--MHDKFLTELTIPY 130
                 556788899*******9994....44.....579******************........9************9998.556666..45588999***** PP

  ATP_bind_1 160 vvvlnkfDllkeklekeleffedveal 186
                 +  +++ Dl++  +  e+  + +++ +
  CCG93238.1 131 ILGVTHQDLAEVWTPAEVADYLEIDPF 157
                 *********765588888888777766 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.5e-07   7.1e-05      10     143 ..      14     155 ..       5     176 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.5e-07
                 T.TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSS...SEEEEEEEE.......TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTH CS
         Arf  10 lkkkelrilllGLDnaGKtTilkklkleelvt.tvPTi...gfnveelei.......knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRl 97 
                  k+++++i + G  +aGKtT +  +++ e+ t  vP +   g +  ++++         ++++++   Gq++    W+   +   +vi +v   d e l
  CCG93238.1  14 HKNQNIKIFVTGPSGAGKTTFIRSISQSEVLTtDVPCTnakGKKETTVAMdygslylDRYSIHLFGSPGQDRFDFTWDILRQGALGVIMLVGGHDPEQL 112
                 3589*********************99998874456441113333333334455555999999************************************ PP

                 HHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGG CS
         Arf  98 eeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgle 143
                    k+  +++l+e +   ++ ++    qDl+e  + +e+++ l+++
  CCG93238.1 113 PLLKKMHDKFLTELT---IPYILGVTHQDLAEVWTPAEVADYLEID 155
                 **9999999998764...5677777899999999999999888765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.4e-07   0.00016      95     143 ..      12      61 ..       2      89 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 3.4e-07
                  HHCTT.SEEEE.ECSTTSSHHHHHHHHCTT-----S--------------S CS
  RsgA_GTPase  95 ellkd.ktsvl.vGqSGvGKStLinallpelelktgevseklgrGkhTTta 143
                  ++ k+ ++ ++  G+SG+GK+t+i ++ ++ e+ t +v  ++ +Gk  Tt 
   CCG93238.1  12 NNHKNqNIKIFvTGPSGAGKTTFIRSISQS-EVLTTDVPCTNAKGKKETTV 61 
                  4444435666526**************998.77788899999999876654 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   9.6e-07   0.00045       3      50 ..      17      65 ..      15      77 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 9.6e-07
                EEEEEEEEEBTTSSCCCCCCTTSSSS------.------------S-EE CS
      Septin  3 ieftlmvvGesglGkttlintlfetdlieeek.leeasekkkktveikk 50
                 ++ ++v G sg Gktt+i+++ ++++ +++   ++a+ kk++tv ++ 
  CCG93238.1 17 QNIKIFVTGPSGAGKTTFIRSISQSEVLTTDVpCTNAKGKKETTVAMDY 65
                57899*******************9998875414445557777777665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     1e-06   0.00048       2      57 ..      21      83 ..      20     153 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1e-06
                EEEEESTTSSHHHHHHHHHTSTEEESSST........TSSSSEEEEEEEETTEEEEEEECGGCS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgekaivsdkp........gtTrdinegrvklkgkeielvDtpGli 57
                + + G + +GK+t+i++++++++ ++d p         tT  + +g + l++ +i+l   pG  
  CCG93238.1 21 IFVTGPSGAGKTTFIRSISQSEVLTTDVPctnakgkkETTVAMDYGSLYLDRYSIHLFGSPG-Q 83
                7899****************877777777444444446777777777778889999999999.3 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   2.5e-06    0.0012      24      54 ..       7      37 ..       2      45 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.5e-06
                HHHHHHHHHT--EEEEEEESTTSSHHHHHHH CS
        IIGP 24 ikeaikeiesaklkiavtGdsGnGkssFina 54
                +++ +++ +++++ki+vtG sG+Gk +Fi +
  CCG93238.1  7 LEKCMNNHKNQNIKIFVTGPSGAGKTTFIRS 37
                6889999**********************75 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   2.5e-06    0.0012       2      27 ..      18      44 ..      17      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.5e-06
      AAA_24  2 klkiliyGpsgiGKTtlakel.gpkpl 27
                ++ki+++Gpsg+GKTt+++++ + ++l
  CCG93238.1 18 NIKIFVTGPSGAGKTTFIRSIsQSEVL 44
                789****************99544444 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.8e-06    0.0027       1      90 [.      20     107 ..      20     139 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.8e-06
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsr 90 
                 K+ + G sg+GKt++++++ ++++ ++  + + ++ ++++++ ++    +  +++++++++   Gq+rf+ + ++  ++a  +i+++  +
  CCG93238.1  20 KIFVTGPSGAGKTTFIRSISQSEVLTTDVPCTNAKGKKETTVAMDY--GSLYLDRYSIHLFGSPGQDRFDFTWDILRQGALGVIMLVGGH 107
                 8999**************************9999998877655554..345678899*************99999999988888776544 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   5.8e-06    0.0027       1      22 [.      21      42 ..      21     126 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.8e-06
      AAA_18  1 IlltGtpGvGKttlakeLskrl 22
                I++tG++G+GKtt+ + +s+++
  CCG93238.1 21 IFVTGPSGAGKTTFIRSISQSE 42
                99****************9884 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1     1e-05    0.0047       1      21 [.      20      40 ..      20      50 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1e-05
                EEEEE--TTSSHHHHHHHHHH CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvle 21
                k+f+TGp+G GKtT+++ +++
  CCG93238.1 20 KIFVTGPSGAGKTTFIRSISQ 40
                69**************99976 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   9.5e-06    0.0045      22      99 ..       7      83 ..       2      91 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.5e-06
       AAA_7 22 ysyllelllknkkpvllvGptGtGKtviikdllkk.ldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpgg 99
                ++  ++ + +++ +++++Gp+G GKt+ i+++ ++ + ++++ +++ + ++ t+    +d    +l++ + +++g pg+
  CCG93238.1  7 LEKCMNNHKNQNIKIFVTGPSGAGKTTFIRSISQSeVLTTDVPCTNAKGKKETTV--AMDYGSLYLDRYSIHLFGSPGQ 83
                56678999999******************99654303333333333332222222..2333334566666666666655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.5e-05     0.007      11      35 ..      18      42 ..      10      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.5e-05
                TSEEEEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 11 gekvaivGenGaGKStLlkllagll 35
                + k+ ++G++GaGK+t+++ +++ +
  CCG93238.1 18 NIKIFVTGPSGAGKTTFIRSISQSE 42
                5578899**************9875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.3e-05     0.011      21      42 ..      17      41 ..       2      50 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.3e-05
                E...EEEEESTTSSHHHHHHHHHHH CS
        TsaE 21 v...ilLeGdLGaGKTtlvrglaka 42
                    i+ +G+ GaGKTt++r++ ++
  CCG93238.1 17 QnikIFVTGPSGAGKTTFIRSISQS 41
                134599***************9886 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     2e-05    0.0094       2      39 ..      21      55 ..      21      99 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2e-05
      AAA_33  2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfg 39
                +++ G++G+GK+t+++++ +    ++l++d+  ++ +g
  CCG93238.1 21 IFVTGPSGAGKTTFIRSISQ---SEVLTTDVPCTNAKG 55
                6889************9984...578888875555554 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.1e-05     0.019     117     151 ..       6      40 ..       2      50 .. 0.79
   2 ?   -1.7   0.0       2.5   1.2e+03     227     246 ..     161     180 ..     159     185 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.1e-05
       T2SSE 117 kiaevlrkavrerglilvsGgTgsGKttllyallk 151
                  +++ +++  +++  i v+G+ g GKtt++ ++ +
  CCG93238.1   6 SLEKCMNNHKNQNIKIFVTGPSGAGKTTFIRSISQ 40 
                 566667777677889**************977654 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.5
       T2SSE 227 slsTlHansaagalerLeql 246
                 ++  l  nsa+++l rL ++
  CCG93238.1 161 GINALDENSATDVLVRLFEI 180
                 56777778888888888665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.7e-05    0.0081      27      47 ..      21      41 ..       6     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.7e-05
      AAA_16 27 vllsGesGvGKsslvrellra 47
                ++++G+sG GK++ +r++ ++
  CCG93238.1 21 IFVTGPSGAGKTTFIRSISQS 41
                79*************999863 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.5e-05     0.016      23      42 ..      18      38 ..       8      47 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.5e-05
      AAA_29 23 g.atlltGpsGsGKSTllDAi 42
                +  +++tGpsG+GK+T++ +i
  CCG93238.1 18 NiKIFVTGPSGAGKTTFIRSI 38
                34589***********99655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.3e-05     0.025       8      29 ..      21      42 ..      14      78 .. 0.82
   2 ?   -2.2   0.0       9.4   4.5e+03      42      67 ..     159     184 ..     143     187 .] 0.74

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.3e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                ++vtG+sG+GKTt +r + ++ 
  CCG93238.1 21 IFVTGPSGAGKTTFIRSISQSE 42
                78**************988764 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 9.4
      AAA_22  42 vvfvtlpsstsskdllrellralgle 67 
                 +v +++  ++s +d+l +l+++++ e
  CCG93238.1 159 CVGINALDENSATDVLVRLFEIIEKE 184
                 56777888888999998888888765 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1     4e-05     0.019       2      33 ..      21      53 ..      20      75 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4e-05
         PRK  2 IgvagsSGaGkttvarkleki.fgrekvkaaei 33
                I v+g+SGaGktt+ r + ++ +  + v+ ++ 
  CCG93238.1 21 IFVTGPSGAGKTTFIRSISQSeVLTTDVPCTNA 53
                679**************9874233355555555 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   4.4e-05     0.021      40      71 ..      11      44 ..       2      63 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.4e-05
       Rad17 40 Lesrkkr..iLLisGPsGCgkstvvkvLskelgi 71
                ++++k++   + ++GPsG gk+t ++ +s+  + 
  CCG93238.1 11 MNNHKNQniKIFVTGPSGAGKTTFIRSISQSEVL 44
                5555555544789**************9987665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.7e-05     0.027      15      71 ..      11      78 ..       2      82 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.7e-05
                     HHHHCTSSS-EEEECSTTSSHHHHHHHHHH...........HSTTTTS-EEEEETTTS-TTCHHHHHH CS
  Sigma54_activat 15 ikkvaktdlsvlitGesGtGKellaraihe...........askrkekpfvavncaaipeelleseLF 71
                     +++  ++++++++tG sG+GK+++ r+i +           + k k++  va++ +++  +  + +LF
       CCG93238.1 11 MNNHKNQNIKIFVTGPSGAGKTTFIRSISQsevlttdvpctNAKGKKETTVAMDYGSLYLDRYSIHLF 78
                     45556778********************9866666665554444455556666666555555555555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.2e-05     0.039      10      43 ..       8      41 ..       2      47 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.2e-05
                HHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 10 ekLlekdelqslvvalvGmgGvGKttlakqilnk 43
                ek +++++ q + +++ G  G GKtt +++i ++
  CCG93238.1  8 EKCMNNHKNQNIKIFVTGPSGAGKTTFIRSISQS 41
                5556677778888*****************9876 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   0.00011      0.05      18      42 ..      16      40 ..       5      58 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00011
    ATPase_2 18 epneiyfiYGpegsGKtaLlkeiie 42
                ++n  +f++Gp g GKt++++ i +
  CCG93238.1 16 NQNIKIFVTGPSGAGKTTFIRSISQ 40
                445558**************98865 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   9.3e-05     0.044      24      41 ..      23      40 ..      16      76 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.3e-05
      AAA_23 24 ItGpNGaGKTTildAikl 41
                +tGp GaGKTT+++ i  
  CCG93238.1 23 VTGPSGAGKTTFIRSISQ 40
                79************9975 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   7.9e-05     0.037       2      33 ..      22      57 ..      21     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.9e-05
                EEESSTTSSHHHHHHHHHHH....HTHEEEEEETTT CS
         AAA  2 llyGppGtGKTllakavake....lgvefleisgse 33
                 ++Gp G GKT++++++ ++    ++v++ + +g++
  CCG93238.1 22 FVTGPSGAGKTTFIRSISQSevltTDVPCTNAKGKK 57
                689***************995544356666655554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00016     0.078      20      40 ..      20      40 ..       8      49 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00016
      AAA_30 20 vavltGpAGtGKttalkalre 40
                  ++tGp G+GKtt ++++ +
  CCG93238.1 20 KIFVTGPSGAGKTTFIRSISQ 40
                4579*************9965 PP

>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00022       0.1      28      60 ..      16      48 ..       6      53 .. 0.83
   2 ?   -2.0   0.0       2.4   1.1e+03      28      53 ..      70      95 ..      46      97 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00022
      AAA_32 28 kkgYNifvlGesgtGrttlvkrlleeiakkept 60
                +++  ifv+G+sg+G+tt+++++ +++  + ++
  CCG93238.1 16 NQNIKIFVTGPSGAGKTTFIRSISQSEVLTTDV 48
                566789****************99887766655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.4
      AAA_32 28 kkgYNifvlGesgtGrttlvkrllee 53
                 + Y i + G++g +r  ++ ++l++
  CCG93238.1 70 LDRYSIHLFGSPGQDRFDFTWDILRQ 95
                46799999999999999998888865 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   0.00019     0.091       1      22 [.      20      41 ..      20      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00019
      AAA_28  1 kivitGgestGKTtlleaLaar 22
                ki +tG++++GKTt ++ +++ 
  CCG93238.1 20 KIFVTGPSGAGKTTFIRSISQS 41
                699**************99975 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   0.00015     0.069      16      44 ..      12      39 ..       3      60 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
                XXXXE..EEEEEEEESTTSSHHHHHHHHH CS
     G-alpha 16 karkkkrevkllllGqseSGKsTilkqlk 44
                + ++k++++k+ + G s+ GK+T+++++ 
  CCG93238.1 12 N-NHKNQNIKIFVTGPSGAGKTTFIRSIS 39
                2.233468*****************9986 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00015     0.073       3      22 ..      21      40 ..      19      75 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00015
                EEEEESTTCCHHHHHHHHHC CS
        cobW  3 tvltGflGsGKTtLlnhlle 22
                + +tG+ G+GKTt+++++ +
  CCG93238.1 21 IFVTGPSGAGKTTFIRSISQ 40
                579*************9874 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00022       0.1       3      22 ..      21      40 ..      20      44 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00022
                EEEEC-TTTCHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklal 22
                ++++G++G GKTt+++++ +
  CCG93238.1 21 IFVTGPSGAGKTTFIRSISQ 40
                789**************976 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0    0.0002     0.093       1      33 [.      21      52 ..      21      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.0002
                EEEEEBTTTTHHHHHHHHHTS--S---SSS--- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnptTr 33
                i v G   +GK++++ ++ ++++l ++  p+T 
  CCG93238.1 21 IFVTGPSGAGKTTFIRSISQSEVLTTD-VPCTN 52
                789*******************88765.55554 PP

>> DUF463  YcjX-like family, DUF463
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00022       0.1       1      22 [.      19      40 ..      19      63 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00022
      DUF463  1 lrlavTGLsraGKtvfitsLvn 22
                +++ vTG s+aGKt+fi s+ +
  CCG93238.1 19 IKIFVTGPSGAGKTTFIRSISQ 40
                6899*************99865 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0002     0.093       1     118 [.      20     141 ..      20     182 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0002
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTS.SEEEEEEEEEET.....TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTi.gvdfytkeievd.....gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkw 93 
                 K+ + G s+ GKt+++ +  +++  ++  +      ++++++ +d       +++++++   Gq++f+   +   ++a g++++   ++ e +  +kk+
  CCG93238.1  20 KIFVTGPSGAGKTTFIRSISQSEVLTTDVPCTnAKGKKETTVAMDygslyLDRYSIHLFGSPGQDRFDFTWDILRQGALGVIMLVGGHDPEQLPLLKKM 118
                 78999***************99987776665504446666677778888878999**************999999999999998888888888888888 PP

                 HHHHHHHSTTTSEEEEEEETTTGGG CS
         Ras  94 veeikrvaeenvpivLvGnKvDlee 118
                 ++++ +  +  +p +L  +  Dl+e
  CCG93238.1 119 HDKFLTELT--IPYILGVTHQDLAE 141
                 888877776..67777777777765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00032      0.15       1      21 [.      21      41 ..      21      78 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00032
  RNA_helicase  1 iwlyGpsgeGKStlakeLaka 21
                  i+++Gpsg GK+t++++++++
    CCG93238.1 21 IFVTGPSGAGKTTFIRSISQS 41
                  789*************97764 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00031      0.14       1      32 [.      21      51 ..      21      78 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00031
  Viral_helicase1  1 ivvhGvpGcGKStlirkllrtsliltvnrpta 32
                     i v G  G+GK+t ir++ ++  +lt+++p +
       CCG93238.1 21 IFVTGPSGAGKTTFIRSISQS-EVLTTDVPCT 51
                     5799999************99.6666666633 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00046      0.22      10      40 ..      18      48 ..       8      64 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00046
      AAA_19 10 ekvllvtaGpGtGKTrvlkhivallvelggv 40
                +  ++vt++ G GKT+ ++ i +  v +++v
  CCG93238.1 18 NIKIFVTGPSGAGKTTFIRSISQSEVLTTDV 48
                446899*************998876666655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0014      0.67      23      56 ..       8      41 ..       3      63 .. 0.76
   2 ?   -0.2   0.0       1.4   6.5e+02     143     169 ..     149     178 ..     101     183 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0014
      AAA_25 23 rwlvkgllpagelallaGapgtGKttlaldlala 56
                ++ + ++   +  + ++G++g+GKtt+  +++ +
  CCG93238.1  8 EKCMNNHKNQNIKIFVTGPSGAGKTTFIRSISQS 41
                566667777788899************8777655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.4
      AAA_25 143 vrlvviDplsralgg..densnsdv.galv 169
                 ++ + iDp+  +  +  dens++dv  +l+
  CCG93238.1 149 ADYLEIDPFLCVGINalDENSATDVlVRLF 178
                 556667887664444469999999866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                       120  (0.00669307); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              38  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 1360.51
//
Query:       CCG93239.1  [L=124]
Description: Roadblock/LC7 family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-15   55.1   0.0    7.5e-15   54.5   0.0    1.2  1  Robl_LC7  Roadblock/LC7 domain


Domain annotation for each model (and alignments):
>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   4.2e-19   7.5e-15      11      91 .]      17      96 ..      11      96 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 4.2e-19
                HHCTECEEEEEETTS-EEEECCSSSS-HHHHHHHHHHHHHHHHHHHHHCTSSSECEEEEEETTEEEEEEECTTTEEEEEEE CS
    Robl_LC7 11 svpgvrgalvvskdGlviatstldnddadqlAalasgllsaakaaarelgegelkelliegkkgelyltpagegalLvvla 91
                 vp+++ al+ + dGl++a+ +l++ d ++l+a+a+++l+++k+ +++ g+ge+ke ++ g +g+ ++++ag +a+L+v++
  CCG93239.1 17 AVPEITAALIATTDGLPVAH-SLSSGDPNRLSAMAATALGLGKRICETYGGGEFKENTVSGSEGQMFIYSAGGKAVLGVIT 96
                69******************.*********************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 831.99
//
Query:       CCG93240.1  [L=285]
Description: ATP synthase subunit a 2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-49  168.0  17.5    3.3e-49  167.7  17.5    1.1  1  ATP-synt_A    ATP synthase A chain
  ------ inclusion threshold ------
       0.12   12.0   0.3       0.42   10.2   0.0    2.0  2  LRR_11        Leucine-rich repeat


Domain annotation for each model (and alignments):
>> ATP-synt_A  ATP synthase A chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.7  17.5   3.7e-53   3.3e-49       1     210 [.      37     270 ..      37     271 .. 0.84

  Alignments for each domain:
  == domain 1  score: 167.7 bits;  conditional E-value: 3.7e-53
                 HHHHHHHHHHHHCCC.CCSS.T.TTTSHHHHHHHHHHHHHHHHHHHHCTSSSTXHHHHHHHHHHHHHHHHHCCHCCSST.................... CS
  ATP-synt_A   1 vlttlivllilllllllatrkkkkklpgklqnlvealvefvdnlvksvigkkkkkkffpliltlflfilvsNllgliPg.................... 79 
                 ++ t+iv+ +++l++ l t +++  +p++lqn++ea+ve +++l+++ ++ k ++  fpl++t f+fi++sN+++liPg                    
  CCG93240.1  37 MIQTWIVMGVIFLIIRLGTLRLS-IIPSGLQNAIEAAVEGLEKLTRGLLEPKVADWAFPLVATYFIFIVFSNITDLIPGvgsigfgekdpsrhlpfaik 134
                 5789***********9*998775.35***********************744679**********************6666666666666666666666 PP

                 ......TTTTTCHHHHHHHHHHHHHHHHHHHHHHHH.GG..GGCHHH........SSSCCCCH...HHH....HHHHHH.HHHHHHHHHHHHHHHHHHH CS
  ATP-synt_A  80 ......lraatadinvtlalAlivfllvlilgikkk.glkgyfkklf........vpplllvp...lll....pielisefarpvsLalRLfgNifAGe 156
                       +r++t+d n+t a+Ali f++ ++++++++ g+kg+f+++f        +   +++p   l +    ++e+is ++rpv+La+RL+gNi++Ge
  CCG93240.1 135 htsvpiFRPPTSDANMTTAMALIFFIMSTYWAFRYHhGIKGVFHHIFgvkggfkgW---IVIPlavL-FtavgFMEIISILIRPVALAMRLYGNIYGGE 229
                 777776****************************988999******9866543331...33333322.13556************************** PP

                 HHHHHHHHHHCCCTGCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_A 157 lllallagllllllllavllsvlilllavlllllelfvgfiQAfvFtlLtlvYi 210
                 ++l++++g+   l+           l av+++++e++v++iQA++FtlL++v+ 
  CCG93240.1 230 TVLHMMTGI---LW----------GLPAVPFYFFEFMVAIIQALIFTLLSIVFT 270
                 ******954...23..........234689**********************96 PP

>> LRR_11  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   4.6e-05      0.42      11      24 ..      54      67 ..      54      68 .. 0.96
   2 ?   -2.1   0.1      0.34     3e+03      15      21 ..     265     271 ..     264     272 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4.6e-05
                T-S-HHHHHHHTTT CS
      LRR_11 11 GtldLsVIlkGLqN 24
                Gtl Ls+I +GLqN
  CCG93240.1 54 GTLRLSIIPSGLQN 67
                9************9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.34
                 HHHHHHH CS
      LRR_11  15 LsVIlkG 21 
                 Ls+++ G
  CCG93240.1 265 LSIVFTG 271
                 8999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.55
# Mc/sec: 1567.39
//
Query:       CCG93241.1  [L=70]
Description: ATP synthase subunit c 2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-07   32.1  12.7    1.5e-07   31.6  12.7    1.1  1  ATP-synt_C  ATP synthase subunit C


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6  12.7   8.5e-12   1.5e-07       6      56 ..      13      67 ..      11      68 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 8.5e-12
                HH.GGGHHHHHHHHHHHHHHHHHHHHSG....HHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C  6 avGlsalgsGigiGkagsagiravarnp....klftksliilafaeaialygLiv 56
                a+Gl+alg ++g+G a+ ++++a++rnp     +ft++l+++a++e +a++ + v
  CCG93241.1 13 AIGLAALGGAVGVGLAALGAAGAIGRNPgsfgLVFTTALLGMALSEGLAILVFFV 67
                89*****************************99*****************98866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.55
# Mc/sec: 384.14
//
Query:       CCG93242.1  [L=176]
Description: ATP synthase subunit b [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-25   87.8  23.5    8.4e-25   87.4  23.5    1.2  1  ATP-synt_B     ATP synthase B/B' CF(0)
     0.0011   19.0   1.0     0.0011   19.0   1.0    2.2  2  FliH           Flagellar assembly protein FliH
     0.0016   18.4   7.7     0.0019   18.1   7.7    1.1  1  PIN_8          PIN like domain
     0.0082   16.4   1.4     0.0082   16.4   1.4    2.2  2  MscL           Large-conductance mechanosensitive channel, Ms
  ------ inclusion threshold ------
      0.037   13.9   0.9      0.043   13.6   0.9    1.2  1  REF            Rubber elongation factor protein (REF)
      0.041   12.9   5.0      0.056   12.4   5.0    1.2  1  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me
       0.11   12.3  11.8       0.17   11.8  11.8    1.2  1  HrpE           HrpE/YscL/FliH and V-type ATPase subunit E
       0.13   12.4   9.7       0.93    9.7   8.9    2.3  2  T3SS_needle_E  Type III secretion system, cytoplasmic E compo
       0.14   11.2   5.0       0.17   10.9   5.0    1.1  1  BPL_N          Biotin-protein ligase, N terminal
       0.16   12.1  22.0       0.36   10.9  22.0    1.6  1  DivIVA         DivIVA protein
       0.21   11.8   6.3       0.33   11.2   1.3    2.0  2  MIEAP          Mitochondria-eating protein
       0.51    9.5  18.4          2    7.5   5.1    2.1  2  ISG65-75       Invariant surface glycoprotein
       0.55   10.5   5.3          1    9.6   3.7    2.3  2  CdiA_C         Contact-dependent growth inhibition CdiA C-ter
       0.87    9.6   3.4        1.2    9.2   3.4    1.1  1  PAPS_reduct    Phosphoadenosine phosphosulfate reductase fami


Domain annotation for each model (and alignments):
>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4  23.5   6.5e-28   8.4e-25       2     131 ..      15     144 ..      14     145 .. 0.99

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 6.5e-28
  ATP-synt_B   2 lvvnliallilvgllikfawkplkkvLdkReekIadeiaeAeerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlkesA 100
                 l+++ i+++i++ +l++fa  p++k+L++R+ekIa+ +++Ae+ ++e+aa+++++++ l++A  +Aa i+++A+k+a  + e+++ ea +ea+r+ ++A
  CCG93242.1  15 LIAQIINFVIVMWVLNRFAFRPVLKILEQRREKIAESLQNAEKIKQELAAAEEARKEILRKANEQAAMIVAEAQKAATYQGEKKILEAIEEAKRILKKA 113
                 789************************************************************************************************ PP

  ATP-synt_B 101 aaeIeqekdralaeLreqvvalavqiaekll 131
                 +++   e+++a++e+r+++ +l ++i +k++
  CCG93242.1 114 EETARLEREKAKEEIRREILNLVIDISSKVI 144
                 ***************************9998 PP

>> FliH  Flagellar assembly protein FliH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   6.5       1.9   2.4e+03       9      63 ..      53     110 ..      38     120 .. 0.53
   2 !   19.0   1.0   8.5e-07    0.0011       5      51 ..     108     154 ..     104     169 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HS--S-HHHHHHHHHHHHTTS CS
        FliH   9 alleelenslaeldeeledqlvqlaldiarkvik....kelsvdpekilalvrealakl 63 
                 + +e+++++la ++e +++ ++  a + a  ++     +++ + ++kil++++ea + l
  CCG93242.1  53 QNAEKIKQELAAAEEARKE-ILRKANEQAAMIVAeaqkAATYQGEKKILEAIEEAKRIL 110
                 3445555555555555444.444443333333331211555667788888888886544 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 8.5e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S-HHH CS
        FliH   5 arlaalleelenslaeldeeledqlvqlaldiarkvikkelsvdpek 51 
                 + l+++ e+ + ++++++ee++ ++++l++di+ kvi+k+ls + ++
  CCG93242.1 108 RILKKAEETARLEREKAKEEIRREILNLVIDISSKVIGKTLSAEDQE 154
                 556777788888999***********************999988776 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   7.7   1.5e-06    0.0019      47     162 ..      43     164 ..      15     168 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.5e-06
       PIN_8  47 nresviskekkayedlekeleklkkaaekkleealkkwakkkald....teelrkelkkqleelkeel..kaeleelkksskadkeedpilkkleelle 139
                 +r++ i ++ + +e++++el+++++a+++ l++a ++ a   a +    t + +k++ +++ee+k+ l   +e+ +l+++  +++ + +il+ + ++ +
  CCG93242.1  43 QRREKIAESLQNAEKIKQELAAAEEARKEILRKANEQAAMIVAEAqkaaTYQGEKKILEAIEEAKRILkkAEETARLEREKAKEEIRREILNLVIDISS 141
                 45555555666666666666555555554444433333322222234346677788888888888888544455556666666666699999999999* PP

       PIN_8 140 gkigealskeeleelvkegekRy 162
                 + ig+ ls+e+ e+l +e+ + +
  CCG93242.1 142 KVIGKTLSAEDQERLKNEVLSKI 164
                 ****************9987665 PP

>> MscL  Large-conductance mechanosensitive channel, MscL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.4   6.4e-06    0.0082      63     111 ..       7      63 ..       2      81 .. 0.59
   2 ?   -0.7   1.7       1.3   1.7e+03      94     117 ..     108     129 ..      72     137 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.4e-06
        MscL  63 aavlkygafiqavinFliiafvi..Flivkaink....kkke.eeeeeeaee..keee 111
                 +  ++++++i+++inF+i+ +v+  F   +++ k    ++++ +e+ ++ae+  +e  
  CCG93242.1   7 QLGIEWNKLIAQIINFVIVMWVLnrFA-FRPVLKileqRREKiAESLQNAEKikQELA 63 
                 56799******************9554.444444443322223222112221212223 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.3
        MscL  94 k..kkkeeeeeeeaeekeeellteir 117
                 +  kk+ee++      ++e+  +eir
  CCG93242.1 108 RilKKAEETA----RLEREKAKEEIR 129
                 1222222222....223334444444 PP

>> REF  Rubber elongation factor protein (REF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.9   3.4e-05     0.043      52     139 ..      24     117 ..      16     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.4e-05
         REF  52 vvgPvyekfkdvPl.elLkfvDrKvdesvtkldkrvpsvvKevssqalavaqkapeaarevasevqraGvveaa......epvakelytkyepva 139
                 +v  v+++f   P+ ++L+   +K+ es+++ +k   +++ +  ++ +++++ka e+a  +++e+q+a  ++           ak++ +k e  a
  CCG93242.1  24 IVMWVLNRFAFRPVlKILEQRREKIAESLQNAEKIKQELAAAEEAR-KEILRKANEQAAMIVAEAQKAATYQGEkkileaIEEAKRILKKAEETA 117
                 56779999999995489999999*******9999888888776666.899*****************9887766344433233444444444444 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   5.0   4.3e-05     0.056     179     260 ..      52     138 ..      43     145 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.3e-05
                 HHHHHHHHHHHHHHHHHCSTT..BTTB--EEEEE...BCCCTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH CS
        MeaB 179 kkeaekaarelraaleleeek..ekeWrpkvlkt...savegeGidelvdaieehrevlkktGllekrrrerakeelrelvedellk 260
                 +++aek ++el aa e  +e   +++ +++++ +    a + +G +++++aiee +++lkk+ ++++ +re+akee+r+ + + +++
  CCG93242.1  52 LQNAEKIKQELAAAEEARKEIlrKANEQAAMIVAeaqKAATYQGEKKILEAIEEAKRILKKAEETARLEREKAKEEIRREILNLVID 138
                 6789999999998888777643344444444433011467789*********************************99999888876 PP

>> HrpE  HrpE/YscL/FliH and V-type ATPase subunit E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  11.8   0.00013      0.17       9     132 ..      48     169 ..      40     174 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
        HrpE   9 lvagaavleeeilrreqlaeslrarellaeArlqAeqllaqarekaeellevaveqAeaqFWeqAnalLrg....lqqeRealeeqlltaveqLLsdal 103
                 +  + +++++e +++e  a++   +e+l +A  qA  ++a+a++ a    e+ + +A+    e+A  +L++     + eRe+ +e++  ++ +L+ d  
  CCG93242.1  48 I--AESLQNAEKIKQELAAAEEARKEILRKANEQAAMIVAEAQKAATYQGEKKILEAI----EEAKRILKKaeetARLEREKAKEEIRREILNLVIDIS 140
                 4..67899999*****99999999*****************99877665564444444....5555565541111677999999999999999999999 PP

        HrpE 104 arlLdetplaeRasALlRqLlksqqgear 132
                 ++++ +t  ae ++ L  ++l + +++++
  CCG93242.1 141 SKVIGKTLSAEDQERLKNEVLSKIPQRGE 169
                 99999999999999998888887776666 PP

>> T3SS_needle_E  Type III secretion system, cytoplasmic E component of needle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.37   4.7e+02      46      59 ..      45      58 ..      38      64 .. 0.62
   2 ?    9.7   8.9   0.00073      0.93      13      62 ..      63     112 ..      46     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.37
                   HHHHHHHHHHHHHH CS
  T3SS_needle_E 46 lqllaeAleaAeaI 59
                    ++ ae+l+ Ae+I
     CCG93242.1 45 REKIAESLQNAEKI 58
                   44556666666665 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00073
                    THHHHHHHHHHHHHHHHHHHHHCCTSSHHHHHHHHHHHHHHHHHHHHHHH CS
  T3SS_needle_E  13 geqakelqdrLeaArarLkqalsspqspeeYqqlqllaeAleaAeaIint 62 
                    +++ ++++++L++A  + +   +  q+++ Yq  ++ +eA+e A +I++ 
     CCG93242.1  63 AAAEEARKEILRKANEQAAMIVAEAQKAATYQGEKKILEAIEEAKRILKK 112
                    556688999***************************************85 PP

>> BPL_N  Biotin-protein ligase, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   5.0   0.00013      0.17     231     339 ..      50     153 ..      31     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00013
       BPL_N 231 aeekeykkvveeleadekaRleflkalLtklgLevneeeeetevpslsplllsslskeeveelleslkeklaaekeeeeevikdendtfrlekedeeea 329
                 ++ ++ +k+ +el+a+e+aR+e l++  ++  + v e++ ++++ + ++ +l ++++++  ++l++ +e++  e+e+ +e i+ e  ++ +  +++   
  CCG93242.1  50 ESLQNAEKIKQELAAAEEARKEILRKANEQAAMIVAEAQ-KAATYQGEKKILEAIEEAK--RILKKAEETARLEREKAKEEIRREILNLVIDISSKVIG 145
                 56678888****************************666.5888888999999998886..69999999888887777888888877777776663322 PP

       BPL_N 330 eeaaeeeeee 339
                 ++   ++e++
  CCG93242.1 146 KT--LSAEDQ 153
                 22..222222 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  22.0   0.00028      0.36      48     125 ..      41     125 ..      37     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00028
                 HHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXX...XXXXXXXXXXXXX CS
      DivIVA  48 vkeleeklkeykeleetLkktlvvaqetaeevkanakkeaeliikeAekkaekive....eaeeeakki...aeeieelkrqarl 125
                 +++ +ek++e  +  e++k+ l +a+e+ +e+ ++a+++a +i++eA+k+a+ + e    ea eeak+i   aee+++l+r++++
  CCG93242.1  41 LEQRREKIAESLQNAEKIKQELAAAEEARKEILRKANEQAAMIVAEAQKAATYQGEkkilEAIEEAKRIlkkAEETARLEREKAK 125
                 5778899999999999********************************9887665556666666666661114455566666555 PP

>> MIEAP  Mitochondria-eating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.3   0.00025      0.33      36      99 ..      15      81 ..       3     109 .. 0.75
   2 ?    3.5   1.0     0.055        71      67     115 ..     110     168 ..      83     176 .] 0.59

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00025
       MIEAP 36 lvqkilfilv...v...lsfrvakealrslkervrkllstssadgsetkelssleeavsdylrkeadlyd 99
                l+++i+  ++   v   ++fr + + l++ +e++ ++l+  ++ ++e   l   eea ++ lrk+ ++ +
  CCG93242.1 15 LIAQIINFVIvmwVlnrFAFRPVLKILEQRREKIAESLQNAEKIKQE---LAAAEEARKEILRKANEQAA 81
                56666666663453788***********************9999999...77777777777777766655 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.055
       MIEAP  67 lstssadgsetke..........lssleeavsdylrkeadlydvksiveevisellktl 115
                 l++ ++++  ++e          l+ + +  s+ + k+++++d + +++ev+s++ +  
  CCG93242.1 110 LKKAEETARLEREkakeeirreiLNLVIDISSKVIGKTLSAEDQERLKNEVLSKIPQRG 168
                 22222222221112334455666777777777888888888888888888888876554 PP

>> ISG65-75  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   8.1    0.0017       2.1      81     134 ..      38      91 ..      34      93 .. 0.91
   2 ?    7.5   5.1    0.0016         2      90     148 ..      88     151 ..      83     164 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0017
    ISG65-75  81 eslleeakekgtltesdaeklkkaceeAkaknkkarekakkalekaekaskkak 134
                  ++le+++ek   + ++aek+k+++++A+++ k+  +ka+++++ +   ++ka+
  CCG93242.1  38 LKILEQRREKIAESLQNAEKIKQELAAAEEARKEILRKANEQAAMIVAEAQKAA 91 
                 5899999************************************99998888886 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0016
    ISG65-75  90 kgtltesdaeklkkaceeAkaknkkarekakkalekaekaskk.....akeaakkAlGeeleee 148
                 ++ +t + ++k+ +a+eeAk+  kka+e+a  ++eka++ +++     + +  +k++G++l+ e
  CCG93242.1  88 QKAATYQGEKKILEAIEEAKRILKKAEETARLEREKAKEEIRReilnlVIDISSKVIGKTLSAE 151
                 5566667778999999999999999999997777766665543222235566666777666655 PP

>> CdiA_C  Contact-dependent growth inhibition CdiA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.7    0.0008         1      25      62 ..      68     107 ..      57     143 .. 0.85
   2 ?   -0.3   0.2      0.98   1.3e+03      32      45 ..     123     136 ..     107     167 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0008
      CdiA_C  25 iisnilkkakkQaknivlnlrd.sdls.ieeikegieral 62 
                 + ++il+ka++Qa+ iv ++++ ++++ +++i e ie+a 
  CCG93242.1  68 ARKEILRKANEQAAMIVAEAQKaATYQgEKKILEAIEEAK 107
                 5689*****************6567777788888888753 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.98
      CdiA_C  32 kakkQaknivlnlr 45 
                 kak+  ++ +lnl 
  CCG93242.1 123 KAKEEIRREILNLV 136
                 33333333333333 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.4   0.00093       1.2      13     115 ..      24     130 ..      23     142 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00093
                  HHHHHHHHHHCTTHEEEEEE-STB-HHHHHHHHHHHHHT....T-EEEEEE-SCHHHHHHHHHH-S-THHHCHHHHHHTHHHHHHHHHCTTECEEE-- CS
  PAPS_reduct  13 lVllhLalkafkpvpvvfvdtghefpetiefvdeleery....glrlkvyepeeevaekinaekhgsslyeeaaeriaKveplkkaLekldedalltG 106
                  +V++ L + af+pv  +  + +++  e ++  +++++++    + r+++ ++ +e a++i+ae +  ++y+ + + +  +e++k+ L+k +e+a l  
   CCG93242.1  24 IVMWVLNRFAFRPVLKILEQRREKIAESLQNAEKIKQELaaaeEARKEILRKANEQAAMIVAEAQKAATYQGEKKILEAIEEAKRILKKAEETARLER 121
                  69***********99999*********************9998889*************************988888889999999999999887776 PP

                  --CCCTTTT CS
  PAPS_reduct 107 aRrdesksr 115
                    ++e+ +r
   CCG93242.1 122 EKAKEEIRR 130
                  666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2870  (0.160076); expected 358.6 (0.02)
Passed bias filter:                      859  (0.0479112); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 1114.10
//
Query:       CCG93243.1  [L=131]
Description: F0F1-type ATP synthase, delta subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-13   51.0   0.0    4.9e-11   43.1   0.0    2.0  2  OSCP            ATP synthase delta (OSCP) subunit
  ------ inclusion threshold ------
      0.022   14.2   0.0      0.028   13.9   0.0    1.1  1  DUF851          Protein of unknown function (DUF851)
      0.037   14.7   1.5      0.057   14.1   0.2    1.9  3  Tn7_Tnp_TnsA_C  TnsA endonuclease C terminal
      0.089   13.1   0.2       0.16   12.3   0.1    1.5  1  dsDNA_bind      Double-stranded DNA-binding domain


Domain annotation for each model (and alignments):
>> OSCP  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0008       3.6       2      36 ..       7      39 ..       7      44 .. 0.78
   2 !   43.1   0.0   1.1e-14   4.9e-11      72     171 ..      32     128 ..      26     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0008
        OSCP  2 arrYAkAlfelAkekgaleeveeelealeavlaed 36
                a+r AkAlf +++++g+++  ee+l+++ + l++d
  CCG93243.1  7 AKRQAKALFRFCQNNGSID--EEKLKEILNKLSQD 39
                5778************998..56777766666555 PP

  == domain 2  score: 43.1 bits;  conditional E-value: 1.1e-14
        OSCP  72 flkllaenkRlalLpeiaeefeellaeargiveaeVtsavpLtdeqlekleaalakklgkkkvkleekvdpsliGGvvvkvgdkviDgSvkgkLeklke 170
                  l+ l++ k   +L ei+e  ++lla++  + +  V+s ++L d q + + ++l+k++g   ++ ++++ p+liGG++++vg  v DgS++ kL+++++
  CCG93243.1  32 ILNKLSQDKPRHYL-EILEWLKQLLANEVAKKTYVVQSSTELPD-QGKSIFEKLEKTFGP-ALEKKYQICPELIGGIRIQVGCDVWDGSIAYKLKNIET 127
                 55555555544444.899************************86.5678999********.6**********************************987 PP

        OSCP 171 q 171
                  
  CCG93243.1 128 L 128
                 5 PP

>> DUF851  Protein of unknown function (DUF851)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.2e-06     0.028      11      78 ..      22      82 ..      18     105 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.2e-06
      DUF851 11 revdekemerllkklkeekkqskkitlpldekskllmdrvvKkpyplkyskkekgellvdekssffkk 78
                 ++de++++ +l+kl ++k  +++  + l+  ++ll + v+Kk+y ++     + e l d+  s+f+k
  CCG93243.1 22 GSIDEEKLKEILNKLSQDK--PRHYLEILEWLKQLLANEVAKKTYVVQS----STE-LPDQGKSIFEK 82
                589************7666..656777788999************7753....333.56777777743 PP

>> Tn7_Tnp_TnsA_C  TnsA endonuclease C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   1.3e-05     0.057      27      78 ..       5      59 ..       1      62 [. 0.88
   2 ?   -1.4   0.0      0.86   3.9e+03      24      42 ..      67      85 ..      61      90 .. 0.75
   3 ?   -3.8   0.0         4   1.8e+04       7      13 ..     122     128 ..     121     129 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.3e-05
  Tn7_Tnp_TnsA_C 27 eeleelaelllerlren...pdttlrellkelDkeyslergtsLplirhLlatke 78
                    +e +++a++l +++++n    + +l+e+l++l ++   +  + L ++++Lla+++
      CCG93243.1  5 KEAKRQAKALFRFCQNNgsiDEEKLKEILNKLSQDKPRHYLEILEWLKQLLANEV 59
                    455889999999999996667899****************************986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.86
  Tn7_Tnp_TnsA_C 24 lseeeleelaelllerlre 42
                    +s +el+++ +++ e+l++
      CCG93243.1 67 QSSTELPDQGKSIFEKLEK 85
                    5667888888888888876 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 4
  Tn7_Tnp_TnsA_C   7 vkNikwl 13 
                     +kNi+ l
      CCG93243.1 122 LKNIETL 128
                     7999876 PP

>> dsDNA_bind  Double-stranded DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.6e-05      0.16      75     102 ..      14      41 ..       4      50 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.6e-05
                 HHH--SS-----HHHHHHHHHHHS---X CS
  dsDNA_bind  75 laqsGqlrskvteeqLkeLLeqvaekkk 102
                 l +  q ++ ++ee+Lke+L++++++k 
  CCG93243.1  14 LFRFCQNNGSIDEEKLKEILNKLSQDKP 41 
                 5566677899**************9664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1408  (0.078532); expected 358.6 (0.02)
Passed bias filter:                     1004  (0.0559987); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 984.30
//
Query:       CCG93244.1  [L=517]
Description: membrane-bound ATP synthase, F1 sector,alpha-subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-67  224.9   0.0    1.1e-66  224.5   0.0    1.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    1.8e-46  157.6   0.7    2.7e-46  157.0   0.7    1.3  1  ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal doma
    1.3e-06   28.8   1.4    3.4e-06   27.5   1.4    1.8  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
  ------ inclusion threshold ------
      0.066   12.5   0.0       0.13   11.6   0.0    1.5  1  ATPase         KaiC
       0.12   12.0   0.1       0.24   11.0   0.1    1.4  1  Tex_N          Tex-like protein N-terminal domain


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.5   0.0   3.2e-70   1.1e-66       1     213 []     153     379 ..     153     379 .. 0.97

  Alignments for each domain:
  == domain 1  score: 224.5 bits;  conditional E-value: 3.2e-70
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHH.HHHHHHSSTS..........S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx..........x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvis.qslskqsnsd..........d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaar 86 
                  Gi ++Da++pi++Gqr+li+g++ +Gkt+i+ +++++q++ +            ++iyv++G++++++++v++++++ +++ ++++v++ +++pv+++
   CCG93244.1 153 GIIAIDAMIPIGRGQRELIIGDRSTGKTTIAiDTIINQARLNkayeneknyrPlYSIYVAVGQKNSNISRVIDTLEKYGALPYSIVVVAAASDPVTLQ 250
                  8899**********************************9777899****99747******************************************** PP

                  HHHHHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEE..TSSEEEEEEEEEEE-GGCSTTSHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  87 easiytgitlAEyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagka..pdrtGsvtivaavspaggDfsdpvtta 182
                  ++++++g++++E+f+++g+++l+++d+ls++a A+r+isl l+++ ++++yp+++++ +++l+ER++++   +  Gs+t+++++++++gD+s++++t+
   CCG93244.1 251 YLAPFAGTAIGEWFMENGMDALIVYDDLSKHAAAYRQISLVLKRPSGREAYPGDIFYLHSRLLERSARLneANGGGSLTALPIIETQAGDVSAYIPTN 348
                  *********************************************************************6544599********************** PP

                  HHHHSSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 183 tlgitdgfivLdkklaqrkhfPainvlvSvS 213
                  +++itdg+i+L+++l+ ++++Painv+ SvS
   CCG93244.1 349 VISITDGQIYLETDLFYQGIRPAINVGLSVS 379
                  *****************************99 PP

>> ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.0   0.7   7.7e-50   2.7e-46       1     126 []     386     511 ..     386     511 .. 0.99

  Alignments for each domain:
  == domain 1  score: 157.0 bits;  conditional E-value: 7.7e-50
  ATP-synt_ab_C   1 QtkamkkvagsLklelaqYrEleaFaqFgsdLDeatkkqLerGerlvelLkQkqysplsveeqviilyaatngllddipvekvkefekelleylee 96 
                    Q+ka+k+vag++klelaq+rEl+aFaqF++dLD atk++L+rG+r+ve++kQ+qysp++ve qv++l+a++ng++d+ip++k+k+ +++l++yle+
     CCG93244.1 386 QIKAVKQVAGKIKLELAQFRELAAFAQFATDLDPATKAKLDRGSRIVEVFKQSQYSPVAVELQVAVLWAVQNGYFDKIPLDKIKQTQTRLVDYLES 481
                    9*********************************************************************************************** PP

  ATP-synt_ab_C  97 ekkeileeieekkklsdeleeklkeaikef 126
                    ++++ile+i++kk+l+d++ ++l+ a+++f
     CCG93244.1 482 REPNILESIKAKKALDDDIIKSLRGALDNF 511
                    ************************999876 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   1.4   9.4e-10   3.4e-06       3      69 .]      29      96 ..      13      96 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 9.4e-10
                   EEETT.EEEEESSTSCETCTTEEEEECCET....CSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N  3 qviGp.vvdvefgigrlpgiynalevelve....fgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69
                   ++iG  vv++e+ ++   g+++++e +  +    fg+ +++  lnl+e+ V+ +v+g++  +++G+eV+ TG
     CCG93244.1 29 REIGDgVVKIEGLSD--AGMNEVIEFP--QrldeFGQPIRALCLNLEETEVGGVVLGNYLAIREGDEVRTTG 96
                   555533999999999..9999999998..55788************************************98 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.6e-05      0.13       1      46 [.     150     193 ..     150     225 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.6e-05
      ATPase   1 vktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaek 46 
                 v+tgI  +D ++   i +g+  li G+  tGKt++a   +i++a+ 
  CCG93244.1 150 VQTGIIAIDAMI--PIGRGQRELIIGDRSTGKTTIAIDTIINQARL 193
                 78*********9..67799999********************9874 PP

>> Tex_N  Tex-like protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   6.8e-05      0.24      37      85 ..     458     507 ..     456     510 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.8e-05
       Tex_N  37 ggldeeqlreieerleyl.relekrkeevlksieeqgklteeLkkkieaa 85 
                 g  d+  l +i+++ ++l   le+r+ ++l+si++++ l++++ k+++ a
  CCG93244.1 458 GYFDKIPLDKIKQTQTRLvDYLESREPNILESIKAKKALDDDIIKSLRGA 507
                 667888899999998888578************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3644.28
//
Query:       CCG93245.1  [L=293]
Description: ATP synthase gamma chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-83  281.2   1.9    1.2e-83  281.0   1.9    1.0  1  ATP-synt  ATP synthase
  ------ inclusion threshold ------
      0.059   13.2   0.5       0.14   11.9   0.1    1.8  2  Leptin    Leptin


Domain annotation for each model (and alignments):
>> ATP-synt  ATP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.0   1.9   1.4e-87   1.2e-83       2     276 ..       4     289 ..       3     292 .. 0.87

  Alignments for each domain:
  == domain 1  score: 281.0 bits;  conditional E-value: 1.4e-87
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHCEHHHHTTT..SSG.S..SSEEEEEEE--SSSSSTTHHHHHHHHHHHH CS
    ATP-synt   2 lkeikrRiksvkstkkItkAmkmVaaaklrkaqealeaarpyaekleevlealakreeeekhpllkee.ekkvllivitSDrGLcGgfNsnvikkaekl 99 
                 ++ei+rRi+s+k+t +ItkAm+mVaa+k+rkaq+++ + rpy++ ++e++++l  ++ + +hpll+++  +k ++ vi++D+GLcG +N+n++++++k+
  CCG93245.1   4 TREIRRRIRSIKNTAQITKAMQMVAASKMRKAQQRAIEGRPYQNLFQEIVQSLIPQAGQLRHPLLQARpIQKEAVFVIGTDKGLCGPLNTNLLREIQKR 102
                 79***************************************************999999*****9995599*************************333 PP

                 HHHHHTTTETEEEEESHHHHHHH.HH....SS.EHHTTCE..-TSS--HHHHHHHHHHHHSHHHTTSBSEEEEEEEEECCTSEEEEEEEEESST...HC CS
    ATP-synt 100 ieelkkegevklvvvGkkgreyf.kr....kvevqleftg..vskkptfeeaseiaeeildlyeegeideveivynkfksaisqeptvekllplekeee 191
                       + + ++v +Gkk+r+y+       + ++ l   +  ++++ +f+ea++i + ++++y ++eid+++i y++f++ + q+p  +++ p+++ e 
  CCG93245.1 103 H-----NPNHRYVSMGKKVRNYLaLLkgnqGENLLLA--DfeLKDNLSFREAKRIGNFLIEKYLNKEIDAISIAYSHFVNPLVQHPIYRRIAPISQVEL 194
                 2.....23569**********9963333433333333..233666999*********************************************655555 PP

                 ..........S..SSTS...EESS.HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ATP-synt 192 ..........kkeksey...efepdeeevleellpeylasliyrallesaasEqaaRmtaMdnAtknakelidkltleyNraRQaaITqELieIvsGa 276
                            ++   +   +fep++ee+l+++lp+y++ +iy+++l+++asE++aRm+aM++At+nak l+++l+leyN+aRQ++IT+E++eI ++ 
  CCG93245.1 195 tkkdnaqestPES---FvpfNFEPSPEELLDNILPFYIHLEIYQSILDNLASEHSARMVAMKSATENAKSLLQDLSLEYNKARQESITKEILEISTAQ 289
                 6666676433334...2455**************************************************************************8875 PP

>> Leptin  Leptin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.23     2e+03      22      34 ..      13      25 ..       3      59 .. 0.56
   2 ?   11.9   0.1   1.6e-05      0.14      53     107 ..     227     284 ..     182     291 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.23
                H------------ CS
      Leptin 22 disneqsvsskqk 34
                 i n+ ++++  +
  CCG93245.1 13 SIKNTAQITKAMQ 25
                4444444443322 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHHHHTS--HH...HHHHHHHHHHHHHHHHHHHHHTT---------S-GG CS
      Leptin  53 mdqtLavyqqilsslpsee...vvqisnDlenLrallkllatsksCelekaseletle 107
                     L++yq il +l+se+   +v +    en ++ll+ l+   + + +++   e le
  CCG93245.1 227 FYIHLEIYQSILDNLASEHsarMVAMKSATENAKSLLQDLSLEYNKARQESITKEILE 284
                 55579***********98723356677899*********9998888777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       898  (0.0500865); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 1921.23
//
Query:       CCG93246.1  [L=467]
Description: ATP synthase F1, beta subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-62  210.1   0.0    3.7e-62  209.7   0.0    1.1  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    3.6e-23   81.9   0.1    8.3e-23   80.7   0.1    1.7  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
  ------ inclusion threshold ------
       0.02   14.7   0.0       0.19   11.6   0.0    2.1  2  T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
       0.03   13.6   0.1       0.06   12.7   0.1    1.5  1  ATPase         KaiC
      0.066   13.1   0.1       0.13   12.2   0.1    1.4  1  RsgA_GTPase    RsgA GTPase
       0.21   10.8   0.1       0.36   10.0   0.1    1.3  1  DUF2075        Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.7   0.0   1.3e-65   3.7e-62       1     213 []     134     354 ..     134     354 .. 0.95

  Alignments for each domain:
  == domain 1  score: 209.7 bits;  conditional E-value: 1.3e-65
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSS..EEEEEEESEEHHHHHHHHHHCHHSS.......GGGGEEEEEEETTS-HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsdd..aiiyvgiGergnevaevleefpegt.......imkrtvlvantsnepvaareas 89 
                  Gi+v+D+++p+ +G++++ +g++gvGktv++ +l+++  +++   +++ g+Ger++e +++++e+ e++         +++ lv+ ++nep+ ar+++
   CCG93246.1 134 GIKVIDLICPFLRGGKVGAFGGAGVGKTVVIMELINNIAKAHggFSVFSGVGERTREGNDLYNEMSEAKvidledlSKSKVALVYGQMNEPPGARLRV 231
                  99*****************************8888887776447***********************55333344566799***************** PP

                  HHHHHHHHHHHHH.TTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHHHHHH CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  90 iytgitlAEyfrd.qgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvttatlgi 186
                   + g+t+AEyfrd ++++vll++d+++r+ +A  e+s++lg++p++ gy+++l++++  l+ER++++  r+Gs+t+++av+++++D++dp + +t+++
   CCG93246.1 232 GLSGLTMAEYFRDeMKQDVLLFIDNIFRFSQAGSEVSALLGRTPSAVGYQPTLASEMGALQERITST--RQGSITSFQAVYVPADDLTDPAPANTFAH 327
                  *************999***************************************************..99*************************** PP

                  SSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 187 tdgfivLdkklaqrkhfPainvlvSvS 213
                  +d++ivL++++a+++++Pa+++l+S+S
   CCG93246.1 328 LDSTIVLERSIAEQGIYPAVDPLASTS 354
                  *************************98 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.1   2.8e-26   8.3e-23       1      69 []       6      77 ..       6      77 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 2.8e-26
                   EEEEETTEEEEESSTSCETCTTEEEEECCET...CSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N  1 ivqviGpvvdvefgigrlpgiynalevelve...fgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69
                   +vq+iGpvvdvef   ++p iynal+++ +      tl+l+v+++lg++ Vr+i+m+stdGl+rG+eV++TG
     CCG93246.1  6 VVQIIGPVVDVEFSDTEVPPIYNALKINYQKegqPTTLTLEVQQHLGDGWVRTIAMSSTDGLKRGMEVEDTG 77
                   89**************************77798678999********************************9 PP

>> T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.4e-05      0.19       2      28 ..     363     389 ..     362     392 .. 0.94
   2 ?    0.3   0.0      0.21   6.3e+02      46      58 ..     406     418 ..     396     424 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.4e-05
  T3SS_ATPase_C   2 spehlqaarklrellatyqenedLini 28 
                     +eh++ ar + ++l++y++ +d+i i
     CCG93246.1 363 GQEHYEVARGVQRVLQRYKDLQDIIAI 389
                    68***********************87 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.21
  T3SS_ATPase_C  46 rpainafLkQgvd 58 
                      +i++fL Q+ +
     CCG93246.1 406 ARKIQRFLSQPFH 418
                    679*******876 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1     2e-05      0.06       2      85 ..     132     216 ..     131     259 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepa...edlrenakslG.wdlekleeegklai 85 
                 +tgI+ +D i+   + +g  v   G++G GKt++ ++ + + a+  g   vf  v e+    +dl++++++   +dle+l ++ k+a+
  CCG93246.1 132 ETGIKVIDLIC--PFLRGGKVGAFGGAGVGKTVVIMELINNIAKAHGGFSVFSGVGERTregNDLYNEMSEAKvIDLEDLSKS-KVAL 216
                 79********9..89******************************************9999999*999986652699999988.5554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   4.3e-05      0.13      90     157 ..     138     205 ..     120     212 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.3e-05
                  HHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEES CS
  RsgA_GTPase  90 leelkellkdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliD 157
                  ++ + + l++  +   G  GvGK+ +i +l+++   + g  s  +g G  T     l++  +++ +iD
   CCG93246.1 138 IDLICPFLRGGKVGAFGGAGVGKTVVIMELINNIAKAHGGFSVFSGVGERTREGNDLYNEMSEAKVID 205
                  5556677777555556889***************************************9999999999 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00012      0.36       8      55 ..     154     202 ..     152     224 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00012
     DUF2075   8 GvaGtGKtvvllnllaeleddeeertavylsvNhplvl..vlrealakke 55 
                 G+aG GKtvv ++l++++  ++++  +v+  v ++ ++   l++++++ +
  CCG93246.1 154 GGAGVGKTVVIMELINNI-AKAHGGFSVFSGVGERTREgnDLYNEMSEAK 202
                 9*****************.9999999999888877664336777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3603.27
//
Query:       CCG93247.1  [L=145]
Description: ATP synthase epsilon chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-25   87.1   0.6      8e-25   86.6   0.1    1.5  2  ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwi
  ------ inclusion threshold ------
      0.012   15.9   8.3      0.016   15.5   8.3    1.2  1  ATP-synt_DE    ATP synthase, Delta/Epsilon chain, long alpha-
      0.015   14.8   0.0      0.019   14.5   0.0    1.0  1  Baculo_PP31    Baculovirus 33KDa late protein (PP31)
      0.074   13.1   0.0        0.1   12.6   0.0    1.2  1  DUF3206        Protein of unknown function (DUF3206)


Domain annotation for each model (and alignments):
>> ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.1   1.8e-28     8e-25       1      80 []       3      82 ..       3      82 .. 0.98
   2 ?   -3.0   0.1       1.6   7.2e+03       9      24 ..      85     100 ..      84     102 .. 0.71

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 1.8e-28
                   EEEEEEESSSEEEEEEEEEEEEEESSSEEEE-TT--SEEEEEESEEEEEEEGGGEEEEEEESSEEEEEETTEEEEEESSS CS
  ATP-synt_DE_N  1 lkleivtpervvfsgeveevvaptteGelgilpgHaplitaLkpgelriktedgeeesiavsgGflevqdnkvtiladta 80
                   ++l++vtpe+v +s+eve+v++p+++Ge+g++++H+plit++ pgel ++++dg++ ++a+ +Gf++++ + v+il+d a
     CCG93247.1  3 FTLQLVTPEGVTLSEEVEQVTLPGIDGEMGVYANHEPLITQIVPGELSYTKNDGKRFYLAIGEGFVKITAKDVSILVDMA 82
                   799**************************************************************************976 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.6
                    SSEEEEEEEEEEEEEE CS
  ATP-synt_DE_N   9 ervvfsgeveevvapt 24 
                    e+++ +++vee +a++
     CCG93247.1  85 EEEIEEKKVEEAIARA 100
                    5677777888888775 PP

>> ATP-synt_DE  ATP synthase, Delta/Epsilon chain, long alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   8.3   3.5e-06     0.016       1      45 [.      86     130 ..      86     132 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.5e-06
                  CC--HHHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH CS
  ATP-synt_DE   1 edIDverAeeAkerAeerLeeasddnidyarAqaaLrRAlaRlqv 45 
                  e+I +++ eeA  rA+++++++   + ++a  qa L + +a+l+v
   CCG93247.1  86 EEIEEKKVEEAIARAQAAIKQKLLGEEELAATQAMLLKSMAQLKV 130
                  79*******************98888******************9 PP

>> Baculo_PP31  Baculovirus 33KDa late protein (PP31)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.2e-06     0.019     158     233 ..      59     135 ..      56     143 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.2e-06
  Baculo_PP31 158 FyrvltetfkngsaPassfiYdlklkkekLtrtvlekgveafkk.illklnekektaassasvvetaasksksrkRk 233
                  Fy  + e f + +a   s++ d+ l++e++ ++ +e++++  ++ i +kl  +e+ aa++a   ++ a+ + +r+R+
   CCG93247.1  59 FYLAIGEGFVKITAKDVSILVDMALREEEIEEKKVEEAIARAQAaIKQKLLGEEELAATQAMLLKSMAQLKVKRRRH 135
                  99999999********************************9999889999899999999999999999988888876 PP

>> DUF3206  Protein of unknown function (DUF3206)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.3e-05       0.1      30      80 ..      70     120 ..      47     134 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
                 HHH---TT--HHHHHHHHH-TTHHHHHHHHHHHHHHHHHTT-TT-SSHHHH CS
     DUF3206  30 lvtedistfdpivlkimekepdwleeavaglqslvvqslledenyddveel 80 
                   ++d+s +  + l++ e e + +eea+a  q+ + q ll +e+   ++ +
  CCG93247.1  70 ITAKDVSILVDMALREEEIEEKKVEEAIARAQAAIKQKLLGEEELAATQAM 120
                 34689************************************9999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       993  (0.0553851); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 968.02
//
Query:       CCG93248.1  [L=101]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-21   76.9   0.0    1.6e-21   76.7   0.0    1.1  1  DUF971    Protein of unknown function (DUF971)


Domain annotation for each model (and alignments):
>> DUF971  Protein of unknown function (DUF971)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.0   9.2e-26   1.6e-21       7      84 ..      11      93 ..       6      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 9.2e-26
      DUF971  7 gkrLeiewddgkesslpaelLRdacpcaecrkpgqr.llqsgk......ipkdvkiesiepvgnyalrlvfsDghdsgiYsweyL 84
                g+ L i+w+d +es + +e LR++cpca c+  g++ +l+++k       pk++++++i+++g+yal++ + Dgh+sgiY+++ L
  CCG93248.1 11 GNYLAIQWSDLSESLIALEKLRKNCPCALCQ--GEStILTKAKapklafGPKSMELKEIRMIGSYALQCFWGDGHQSGIYPFSLL 93
                5789***************************..555266666699999999*******************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 692.37
//
Query:       CCG93249.1  [L=311]
Description: tRNA(Ile)-lysidine synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-46  157.6   0.0    3.7e-46  157.2   0.0    1.2  1  ATP_bind_3     PP-loop family
    2.3e-05   24.0   0.0    0.00088   18.8   0.0    2.2  2  QueC           Queuosine biosynthesis protein QueC
    0.00024   21.2   0.1    0.00048   20.2   0.0    1.6  2  PAPS_reduct    Phosphoadenosine phosphosulfate reductase fami
    0.00064   18.6   0.0     0.0013   17.6   0.0    1.5  1  tRNA_Me_trans  tRNA methyl transferase
  ------ inclusion threshold ------
      0.027   14.0   0.0        1.6    8.3   0.0    2.3  2  ThiI           Thiamine biosynthesis protein (ThiI)
      0.035   14.6   0.0      0.073   13.6   0.0    1.5  1  TilS           TilS substrate binding domain


Domain annotation for each model (and alignments):
>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.2   0.0   1.2e-49   3.7e-46       2     182 .]      26     198 ..      25     198 .. 0.96

  Alignments for each domain:
  == domain 1  score: 157.2 bits;  conditional E-value: 1.2e-49
                 EEEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE--HHHCTTSTCCCHHHHHHHHHHHHCHHCCT.CEE CS
  ATP_bind_3   2 vlvAvSgGlDSmaLllllaklkkklgiklvaihvdhglreeskeeaelvkelckklnikleiekvdvakkkgknleeaARelRYevlkealkkegievl 100
                 vl ++SgG+DS++Ll+ l++  k    k +++h++hg r+  + +++lv+el+k+ln++++ +k +   k+  ++e+ ARe R++++  +++++++  l
  CCG93249.1  26 VLCGISGGVDSIVLLHSLVEAGK----KPIVLHFEHGWRKDEALDSKLVEELSKELNVEFIKKKSE---KSFPKTEAVAREERFRFFIDTAQRKNCYDL 117
                 6789*****************77....89******************************9999988...67899************************* PP

                 E---BHHHHHHHHHHHHCCT--CCHHH-S-SEEEETTCCEE-CCCT--HHHHHHHHHHTT---B--CGGGCTTSHHHHHHHT CS
  ATP_bind_3 101 llAhhadDqaEtfllrlargsglaglagikeaseiasirlvRPlLkvskeeleeylkekkikwveDesNadekyeRnriRke 182
                 +lAhhadDq+Etfl++l rg+g++  +g+++ s++ + +++RP+L+++k+++ +++k+++  w+eDe+N +  + Rn+iRke
  CCG93249.1 118 VLAHHADDQVETFLMQLLRGTGTK-GWGMDKISSFGKLTIYRPFLDFWKADIIAFAKKNQYCWREDETNDNALFLRNKIRKE 198
                 **********************85.58*****************************************************85 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.9e-07   0.00088       3      55 ..      27      80 ..      25     102 .. 0.84
   2 ?    2.8   0.0     0.024        70     147     176 ..     152     178 ..     143     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.9e-07
                EEE--SSHHHHHHHHHHHHH-SEEEEEEEESS-T..TSHHHHHHHHHHHHT--.- CS
        QueC  3 vvllSGGlDSttvlalakkegkevealtfdYgqr..hkkeleaakkiakelgvee 55
                ++ +SGG+DS ++l    ++gk+ ++l+f+ g r  ++ + + +++++kel+v e
  CCG93249.1 27 LCGISGGVDSIVLLHSLVEAGKKPIVLHFEHGWRkdEALDSKLVEELSKELNV-E 80
                5679****************************9955566778999*****999.3 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.024
                 HHTS--EEE-TTTT--HHHHHHHHHHTTHH CS
        QueC 147 gedkkieieaPlidlsKaeivklgkelgvp 176
                 g   k++i  P++d+ Ka+i++ +k+ ++ 
  CCG93249.1 152 G---KLTIYRPFLDFWKADIIAFAKKNQYC 178
                 3...599*****************998765 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.6e-07   0.00048       6      70 ..      30      96 ..      25     130 .. 0.83
   2 ?   -3.4   0.0       2.9   8.7e+03     131     152 ..     154     176 ..     143     177 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.6e-07
                 --SSCTCHHHHHHHHHHCTTHEEEEEE-STB-HHHH..HHHHHHHHHTT-EEEEEE-SCHHHHHHHH CS
  PAPS_reduct  6 vsgGkdslVllhLalkafkpvpvvfvdtghefpeti..efvdeleeryglrlkvyepeeevaekina 70
                 +sgG ds+Vllh +++a k+  v++ + g+  +e +  ++v+el+++++++++  ++e+++ + ++ 
   CCG93249.1 30 ISGGVDSIVLLHSLVEAGKKPIVLHFEHGWRKDEALdsKLVEELSKELNVEFIKKKSEKSFPKTEAV 96
                 7*******************88************9833589**********8888888776555444 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.9
                  EEE-.CCCT--HHHHHHHHHHCT CS
  PAPS_reduct 131 lrvf.PllnWteedvwqyilren 152
                  l ++ P l++ + d+ +++++++
   CCG93249.1 154 LTIYrPFLDFWKADIIAFAKKNQ 176
                  55666999999999999998875 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.3e-07    0.0013       3      74 ..      26      90 ..      24     100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.3e-07
  tRNA_Me_trans  3 vvvalSgGVDSsvaaallkeqgyevigvflklweeedeegkeccaeedlkdaervaeklgiplevvdfekey 74
                   v++++SgGVDS v ++ l e+g++ i ++++  +++de+        d k +e+ +++l++++ + + ek++
     CCG93249.1 26 VLCGISGGVDSIVLLHSLVEAGKKPIVLHFEHGWRKDEAL-------DSKLVEELSKELNVEFIKKKSEKSF 90
                   89***************************99999877776.......8888889999999999888888877 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00053       1.6       5      53 ..      25      74 ..      22      86 .. 0.75
   2 ?    3.3   0.0     0.018        53     132     158 ..     148     174 ..     144     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00053
        ThiI  5 kvlaLlSgGiDSpVaaylllkRGcrvvlvhlknepgtseeaiek.vekla 53
                 vl+ +SgG+DS V  + l++ G +  ++h++    + e+   k ve+l 
  CCG93249.1 25 IVLCGISGGVDSIVLLHSLVEAGKKPIVLHFEHGWRKDEALDSKlVEELS 74
                5899***************************7544444433322145554 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.018
        ThiI 132 isavvnllilrPLigldKeeiiklAke 158
                 is+  +l+i rP + + K +ii++Ak+
  CCG93249.1 148 ISSFGKLTIYRPFLDFWKADIIAFAKK 174
                 6777799******************96 PP

>> TilS  TilS substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.4e-05     0.073       2      50 ..     243     289 ..     242     297 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.4e-05
                 -HHHHHHS-HHHHHHHHHHHHHHTTTT--HHHHHHH.HHHHH.H-S-SE CS
        TilS   2 siaaLaaLsparqrrlLRrWLaqlglpmpsaahLeellrqlllaaedaq 50 
                 + ++L++ +   qr  + +WL+++g+ ++s + +e  +r+++  ++d++
  CCG93249.1 243 RFSDLEKAPIGKQRLAIGLWLKKRGVADISFEDIES-IRKMI-GKQDKK 289
                 66889999999**************99*********.*****.888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2180.36
//
Query:       CCG93250.1  [L=250]
Description: Pseudouridine synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-14   52.1   0.0    4.8e-13   49.5   0.0    2.0  1  PseudoU_synth_2  RNA pseudouridylate synthase
    5.6e-07   29.2   0.1    1.3e-06   28.0   0.1    1.6  1  S4               S4 domain
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.028   14.2   0.0    1.4  1  S4_2             S4 domain


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   8.1e-17   4.8e-13       1     159 [.      70     198 ..      70     199 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 8.1e-17
  PseudoU_synth_2   1 dlvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeega 94 
                      d+++++KP g ++++++        +    +   ++  +++  v+RLDk+++Gl+ll++++ + nk  +  ++ ++ K+Yl+ +          
       CCG93250.1  70 DYFIFYKPRGFICSKTG------LLGERTIYHILPPSFQKFFYVGRLDKDSEGLILLTNDGLLTNKILH--PKFHFPKTYLVSLA--------- 146
                      699**************......999999999999999*******************************..*************5......... PP

  PseudoU_synth_2  95 ikkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                        +++++        + k+e l g   + ++ +++     + +  + +++ l +G k+QiR +l+
       CCG93250.1 147 --SPFDE--------NSKKELLRGMYMEGKIAKVQDV---QIKEKNRLKIILTQGIKRQIRNMLS 198
                      ..77777........4445555555555555555555...55666799999***********986 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   2.1e-10   1.3e-06       2      48 .]      12      57 ..      11      57 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.1e-10
                EHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4  2 RLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48
                R+  +la  gl+s rr ++ +I+ G V+VN k v++ s ++ p D +
  CCG93250.1 12 RINRYLASCGLGS-RRSCEAFIRSGLVKVNDKTVRSLSLKINPQDKV 57
                89999*******9.****************************99976 PP

>> S4_2  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.8e-06     0.028      28      61 ..      30      63 ..      26      65 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.8e-06
        S4_2 28 afiaegeVkvNGevetrRgkKlraGdvVeidget 61
                afi +g VkvN+++      K+ + d Ve++g+ 
  CCG93250.1 30 AFIRSGLVKVNDKTVRSLSLKINPQDKVEFNGQI 63
                69*****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.52
# Mc/sec: 1445.26
//
Query:       CCG93251.1  [L=464]
Description: Argininosuccinate lyase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-68  230.5   0.0    3.6e-68  230.2   0.0    1.1  1  Lyase_1   Lyase
    1.6e-13   51.2   0.0    4.1e-13   49.9   0.0    1.7  1  ASL_C2    Argininosuccinate lyase C-terminal


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.2   0.0   4.1e-72   3.6e-68       1     310 [.      10     301 ..      10     303 .. 0.96

  Alignments for each domain:
  == domain 1  score: 230.2 bits;  conditional E-value: 4.1e-72
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSS CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekv 99 
                 grf+ k + l+  f+++++++ rl ++di++++a ++ ++k +++  +e ++i++al+e+  +++++ qf+          +v mn+++ +     +k 
  CCG93251.1  10 GRFHEKPSSLFTRFSQSISFDWRLYHQDIQGSIAHARMLEKIGIIDSKESEEIQSALSEISHQIEQG-QFQWSMEH----EDVHMNIEYALT----QKT 99 
                 8999**********************************************************99999.88766655....556688888888....888 PP

                 GIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEET CS
     Lyase_1 100 epndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvell 198
                 ++  k+ht++S+nDq++T +r+++k+++ +k+ + l +L+ +l + a+++ d v +G+Thlq+A+Pv +++++ ay+e+lerd+e++   +k   v+ l
  CCG93251.1 100 KAGLKLHTARSRNDQIATTMRMWVKEEV-QKIFNLLCRLQAILIQWAEKHLDLVIPGYTHLQRAQPVSIAHQILAYVEMLERDKEKFLACYKSADVLIL 197
                 8***************************.66******************************************************************** PP

                 TTTTTTSSTTTSCCTHHHHHHHHHHHHHCSTEESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEBT CS
     Lyase_1 199 gggtavgtglnadpefaelvakelakvtglpvkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvNP 297
                 g+g+++g  l  d+e   +vak l+ +++   +++ns++ vsdrD+v+++l   + l ++Ls+faeD+ l ss+e+g+ el +   + GSS+MP K+NP
  CCG93251.1 198 GSGALAGSSLPLDRE---YVAKLLG-FSK---VSENSMDGVSDRDFVLDFLYGGASLGIHLSRFAEDMVLWSSSEFGFLELPDSFAS-GSSLMPNKKNP 288
                 ***************...*******.999...9******************************************************.*********** PP

                 HHHHHHHHHHHHH CS
     Lyase_1 298 vqlElltgvagrv 310
                 + +El++g+a+r 
  CCG93251.1 289 DIFELIRGKASRL 301
                 **********986 PP

>> ASL_C2  Argininosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   4.6e-17   4.1e-13       4      68 ..     369     433 ..     367     434 .. 0.94

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 4.6e-17
                 HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHTT--GGG--HHHHHHH-TT--GGGGGGSSHHHHT CS
      ASL_C2   4 ATdlADyLvrkGlpFReAHeivgravrlaeekgkeleeltleelkeisplleedveeaLdpeasV 68 
                 ATd+ D+Lv++ +pFReAH+ +g+++ ++e++ + l+e++ + l +i+p l +  +e +dp++s+
  CCG93251.1 369 ATDITDWLVQRQIPFREAHHKIGELIGYCEKNSILLSEAPESVLSRIHPDLPKVWKELFDPQKSL 433
                 9***********************************************99998888899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3240.30
//
Query:       CCG93252.1  [L=561]
Description: ABC-type transport system involved in cytochrome c biogenesis, permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-34  117.4  22.2    1.5e-33  116.4  22.2    1.5  1  Cytochrom_C_asm  Cytochrome C assembly protein
  ------ inclusion threshold ------
        5.6    7.1  11.4        2.5    8.3   0.2    3.2  3  CcmD             Heme exporter protein D (CcmD)


Domain annotation for each model (and alignments):
>> Cytochrom_C_asm  Cytochrome C assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4  22.2   1.6e-37   1.5e-33       1     214 []     309     514 ..     309     514 .. 0.90

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 1.6e-37
  Cytochrom_C_asm   1 lsnleesllllawilsllgllleylarklnlsllaavaliaalillgfalflllaelqesadlnpalqsp.ilmiHvplallsYatliigalls 93 
                      +sn++es++ +++++ ++ l++e  + +   +++  +a+++a+i+++++    l     +++l+p+l+++ +l iHv ++ lsYa+++++  ls
       CCG93252.1 309 VSNMYESVVWVSFGVMFFALVFETIYHS---RFFLMAACPFAAICMMLVDSQPLIFDPTIQPLVPVLRNNfWLTIHVLTITLSYAAFALALGLS 399
                      59********************998888...*****************99999999999********9877*********************** PP

  Cytochrom_C_asm  94 ialliierqlkkkkklklsanlkllkqldrlsyriiliGfvlltigiilGsvWaeeaWGsywsWDpketaslitWlvfaallhsriekgwrgkk 187
                       ++l++ +++             +   l++++yr  +iG++ll +g ilG vWa+  WG +w WDpket++lit+l ++a+lh+ri + w    
       CCG93252.1 400 HIYLWNASKN-------SAMGGFQKGVLAKYIYRSLQIGVFLLAAGTILGGVWANYSWGRFWDWDPKETWALITLLCYLAVLHGRIAHWWGEFG 486
                      ****988863.......23333344456778******************************************************987788888 PP

  Cytochrom_C_asm 188 aailailgflllllayfgvrll.geglh 214
                       a+ ++l+fl +l+a +gv+++ g+glh
       CCG93252.1 487 LAVGSVLCFLSVLMAWYGVNFVlGKGLH 514
                      9999****************95256665 PP

>> CcmD  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.3       1.7   1.5e+04      10      19 ..     259     268 ..     258     269 .. 0.78
   2 ?    8.3   0.2   0.00028       2.5       7      24 ..     317     334 ..     313     337 .. 0.88
   3 ?    5.3   1.0    0.0023        21       6      20 ..     384     398 ..     381     408 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.7
        CcmD  10 sYgitllvla 19 
                 +Ygi+ l+++
  CCG93252.1 259 CYGIASLIFL 268
                 8999988776 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00028
        CcmD   7 VWlsYgitllvlagLilw 24 
                 VW s+g+ +++l+ + ++
  CCG93252.1 317 VWVSFGVMFFALVFETIY 334
                 9************99886 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0023
        CcmD   6 YVWlsYgitllvlag 20 
                  + lsY++++l+l++
  CCG93252.1 384 TITLSYAAFALALGL 398
                 689**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 3314.51
//
Query:       CCG93253.1  [L=53]
Description: hypothetical protein MFUM_970022 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       122  (0.00680462); expected 358.6 (0.02)
Passed bias filter:                      119  (0.00663729); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 405.32
//
Query:       CCG93254.1  [L=415]
Description: Riboflavin biosynthesis protein ribBA (Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase-2) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-80  269.5   0.0    5.5e-80  267.4   0.0    1.9  2  DHBP_synthase    3,4-dihydroxy-2-butanone 4-phosphate synthas
    2.1e-73  245.3   0.0    4.2e-73  244.3   0.0    1.5  1  GTP_cyclohydro2  GTP cyclohydrolase II
  ------ inclusion threshold ------
      0.014   15.7   0.1       0.86    9.9   0.0    2.4  2  PucR             Purine catabolism regulatory protein-like fa
      0.045   12.8   0.2        8.1    5.4   0.1    2.2  2  EcoRI            Restriction endonuclease EcoRI


Domain annotation for each model (and alignments):
>> DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.4   0.0   1.2e-83   5.5e-80       2     192 .]      13     205 ..      12     205 .. 0.99
   2 ?   -0.7   0.0      0.19   8.4e+02     138     163 ..     325     350 ..     318     361 .. 0.85

  Alignments for each domain:
  == domain 1  score: 267.4 bits;  conditional E-value: 1.2e-83
                    HHHHHHHTT--EEEESSTTTT-BEEEEEEGGG--HHHHHHHHHHB-S--EEEEEHHHHHHTT--BSSS..S-SSTT---BB--EEESST-SSS-SH CS
  DHBP_synthase   2 eaiealkaGkfvivvDdedrenegdLiiaAekvtpekvafmirhasGlicvalteeradeLeLplmve..enedkhktaftvsvdaaegttTGIsa 95 
                    ea+e++++Gk+vivvDdedrenegd+i aAe + +e v+fm + ++Glicva+t+e+ad+L+Lplmv+  +n+  ++t ft+svd+ +gttTGIsa
     CCG93254.1  13 EALENVRQGKLVIVVDDEDRENEGDFIGAAELCHAEMVNFMTKVGRGLICVAITQEQADRLNLPLMVQpkDNTALYGTPFTISVDYIKGTTTGISA 108
                    89*****************************************************************98889999********************* PP

                    HHHHHHHHHHH-TT--GGGEEEEEEEEEEEE-TTGGGTS-SHHHHHHHHHHHTTS-SBEEEEEBB-TTSCB-BHHHHHHHHHHHT-EEEEHHHHHH CS
  DHBP_synthase  96 aDRalTirkladpkakpedfrrPGhvfplrareggvleRrghTEaavdLarlaglkpaavicellnddgtmarrdeleefakkhglkiitiedlie 191
                     DRa+Tir+l +p++  +dfrrPGh+fplr+++ggvl R+ghTEaavdLarl+gl+pa+v++e+++ddgtmar+++l+++a++++l+iiti+dli+
     CCG93254.1 109 DDRAKTIRALSHPHSLSTDFRRPGHIFPLRSSPGGVLMRAGHTEAAVDLARLSGLNPAGVLVEIMKDDGTMARLEDLKKIARTYNLPIITIKDLIA 204
                    ***********************************************************************************************9 PP

                    H CS
  DHBP_synthase 192 y 192
                    y
     CCG93254.1 205 Y 205
                    8 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.19
                    HHHHHHHHHHTTS-SBEEEEEBB-TT CS
  DHBP_synthase 138 TEaavdLarlaglkpaavicellndd 163
                     Ea ++La +a+ + +++ c++l++ 
     CCG93254.1 325 VEANLALAFAADNRDYGIGCQILRSL 350
                    6999******************9765 PP

>> GTP_cyclohydro2  GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.3   0.0   9.3e-77   4.2e-73       2     163 .]     215     380 ..     214     380 .. 0.98

  Alignments for each domain:
  == domain 1  score: 244.3 bits;  conditional E-value: 9.3e-77
                      XEEEEEEEETTEEEEEEEE--.....EEEEEE-.........EEEEEE--HHHHHS-B--TTTTTHHHHHHHHHHHH-.EEEEEE--TTTTTHH CS
  GTP_cyclohydro2   2 rvaeaklptrfgefrliayedkvdgkehlalvkgdi....pvlvRvHsecltgDvlgslrcdcgeqldealeliaeegrGvlvylrqegrgigl 91 
                      +v +++lpt+fg+f+l ay++ ++++ehlal+kg++    pvlvRvHs+cltg++++slrcdc++ql+ a+++i++eg+G++vyl+qegrgigl
       CCG93254.1 215 KVISVNLPTEFGDFQLLAYRNILTNEEHLALIKGKWdpqePVLVRVHSQCLTGEIFHSLRCDCRQQLEMAMAAIEKEGKGAIVYLKQEGRGIGL 308
                      54589*********************************************************************99****************** PP

                      HHHHHHHHHHHCT--HHHHHHHHT--S-----HHHHHHHHHTT--EEEEE-S-HHHHHHHCTT....SEEEE CS
  GTP_cyclohydro2  92 lnklkayalqdeglDTveanlalglpadardygiaaqILkdlgvkkirLlTnnpekveaLegfgievvervp 163
                      lnklkay+lqd g+DTveanlal ++ad rdygi++qIL+ lg+++irLlTnnp k  +Legfg+e+ver+p
       CCG93254.1 309 LNKLKAYRLQDAGMDTVEANLALAFAADNRDYGIGCQILRSLGIHRIRLLTNNPVKRIGLEGFGLEIVERIP 380
                      **********************************************************************97 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.022        97      65     102 ..      43      82 ..       6      88 .. 0.62
   2 ?    9.9   0.0   0.00019      0.86      64     116 ..     158     215 ..     142     216 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.022
        PucR  65 elaeagvaaLviklgr..eipeelieaadelglPlielpe 102
                 el +a+++  + k+gr     +   e ad+l+lPl++ p+
  CCG93254.1  43 ELCHAEMVNFMTKVGRglICVAITQEQADRLNLPLMVQPK 82 
                 566666666777777643224556689*********9987 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00019
        PucR  64 relaeagvaaLviklg.r....eipeelieaadelglPlielpeevpfveiieevlea 116
                 ++l+  + a++ +++  +    +  e+l ++a++++lP+i++++ + +   +e+++e+
  CCG93254.1 158 ARLSGLNPAGVLVEIMkDdgtmARLEDLKKIARTYNLPIITIKDLIAYRTQTESLVEK 215
                 67777788888888853245443459******************99999888877765 PP

>> EcoRI  Restriction endonuclease EcoRI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1    0.0018       8.1     103     142 ..      15      54 ..      11      58 .. 0.94
   2 ?    5.2   0.0    0.0021       9.2     167     199 ..     164     198 ..     155     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0018
       EcoRI 103 ienirkGklvGkkndqdlmaaGnaiersykniseianfml 142
                 +en+r+Gklv   +d+d    G+ i  +    +e+ nfm 
  CCG93254.1  15 LENVRQGKLVIVVDDEDRENEGDFIGAAELCHAEMVNFMT 54 
                 7*************************************96 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0021
       EcoRI 167 rpdGrvvtleynsGalnrldrlt..aanyglpint 199
                 +p G  v++  ++G++ rl+ l   a  y lpi t
  CCG93254.1 164 NPAGVLVEIMKDDGTMARLEDLKkiARTYNLPIIT 198
                 699****************9885327789999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3362.60
//
Query:       CCG93255.1  [L=254]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2106.85
//
Query:       CCG93256.1  [L=202]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1510.51
//
Query:       CCG93257.1  [L=323]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2725.03
//
Query:       CCG93258.1  [L=715]
Description: putative hydroxylamine oxidoreductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.6e-150  498.3  18.4   9.3e-150  497.2  16.6    2.1  2  Multi-haem_cyto  Seven times multi-haem cytochrome CxxCH
    6.3e-11   42.4  33.8    5.2e-09   36.3   0.0    8.7  6  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
      5e-10   39.2  34.4      0.051   13.6   0.5    5.9  3  Cytochrome_C7    Cytochrome c7 and related cytochrome c
    3.6e-06   28.0   0.0    3.6e-06   28.0   0.0    7.5  5  Cytochrom_C      Cytochrome c
      0.002   17.9  38.9       0.52   10.1   2.5    7.3  6  Paired_CXXCH_1   Doubled CXXCH motif (Paired_CXXCH_1)
     0.0033   17.9  39.9       0.55   10.7   3.6    6.3  4  Cytochrom_c3_2   Cytochrome c3
  ------ inclusion threshold ------
       0.05   13.9  37.9        5.9    7.3   5.8    5.5  6  Cytochrom_CIII   Class III cytochrome C family
      0.058   13.4   0.0       0.17   12.0   0.0    1.7  2  Thg1             tRNAHis guanylyltransferase
      0.064   14.1  25.6         12    6.7   0.0    7.9  8  DHC              Dihaem cytochrome c


Domain annotation for each model (and alignments):
>> Multi-haem_cyto  Seven times multi-haem cytochrome CxxCH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.22   4.4e+02     116     144 ..     252     280 ..     244     287 .. 0.85
   2 !  497.2  16.6  4.7e-153  9.3e-150       1     269 []     316     585 ..     316     585 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.22
                      HHHHTTS-STT--HHHHHHHSHHHHHHHH CS
  Multi-haem_cyto 116 eacatchngvdhnefenyllskhgtvyev 144
                        c +ch+ v    f ++  s hg++ ++
       CCG93258.1 252 SDCLACHKTVTPGVFHAWEKSIHGNLEAI 280
                      46999******************998665 PP

  == domain 2  score: 497.2 bits;  conditional E-value: 4.7e-153
                      ----HHHHHT-TT-S-EETTTS-----HHHHHTT-HHHHHHHHTHHHH---TT-SS-TT-SSSTTHHHHHHTSHHHHH-S-HHHHHHHHHTS-T CS
  Multi-haem_cyto   1 kevgcidchvdvgaekaehkkdlrlpdaaacgtchlqefaereserdtlewpnkqwpkgrpshaldyeanvelavwaameqrevaegcdmchtn 94 
                      kev+cidch+++ga+k++h+ dl++pd+++cg+ch+++fae+eser++  wp+++wp+g+psha+d+eanv+la+waam++r+va+gcdmch++
       CCG93258.1 316 KEVSCIDCHGSIGAQKIRHDVDLHMPDRVTCGSCHVRQFAESESERKQ-IWPHNEWPQGHPSHAVDWEANVNLAAWAAMPERAVAQGCDMCHYQ 408
                      79**********************************************.8******************************************** PP

                      TT-STSSSTTTT--HHHHHSTHHHHTTS-STT--HHHHHHHSHHHHHHHHHTTTS-TTS-GGGTTTTS---S--HHHHHSEETTEE-S--TTT- CS
  Multi-haem_cyto  95 qnkcdschtrhefsaaearkpeacatchngvdhnefenyllskhgtvyevlgdkwnfevplkdalakggqtaptcalchleyegeyshnlvrkv 188
                      qn+cd+chtrh+fsaaear+p +catchngvdhnefeny+lskhg +++++ ++wnf+vplkda+akgg+taptca+ch+ey+geyshnlvrkv
       CCG93258.1 409 QNRCDGCHTRHSFSAAEARNPLSCATCHNGVDHNEFENYMLSKHGIIFQAQSKNWNFDVPLKDAIAKGGYTAPTCASCHFEYHGEYSHNLVRKV 502
                      ********************************************************************************************** PP

                      SS-S-TSTTHHHHT..TSHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTTTTS-- CS
  Multi-haem_cyto 189 rwafnpvpeiadnl..ehewfeerkeswvetctkchsesfarsyldvvdkgtleglkkekeakkvveklyedglltgqktnrp 269
                      rwafnp+peia+++  +++w+++rke+w++tc++chs++fa ++l+++d+++++glk+++eakkv+e+ly+dgll+gqktnrp
       CCG93258.1 503 RWAFNPTPEIAQGIkeKQPWYQQRKEDWISTCSACHSARFAGEWLETADQAIFDGLKVQEEAKKVIEALYKDGLLVGQKTNRP 585
                      **************66679***************************************************************9 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.6e-12   5.2e-09       5      67 .]      62     148 ..      59     148 .. 0.84
   2 ?    3.8   0.0     0.036        72      11      20 ..     251     262 ..     246     299 .. 0.70
   3 ?    0.5   4.3      0.39   7.8e+02      11      24 ..     317     330 ..     309     397 .. 0.80
   4 ?  -10.4  15.5         9   1.8e+04      13      19 ..     431     437 ..     389     458 .. 0.71
   5 ?    5.0   0.1     0.015        31       7      19 ..     475     488 ..     470     518 .. 0.72
   6 ?    5.5   0.0      0.01        21       7      24 ..     527     544 ..     522     576 .. 0.68

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.6e-12
  Cytochrome_CBB3   5 aGaalykknCasCHgkggag............pslagrdwepdalvdiiknG............kgaMpafggqlsdeelwalvaYl 67 
                      +G++++ ++C++CH + g+g            p++ +++  +++l d++ +G            +g Mp++g+ ++d++l+++ +Y+
       CCG93258.1  62 RGQEVFSRSCVGCHQQSGQGlvgsfpplvghvPNIVNSKNGKEYLIDVVLYGlegpiqvdtqqyNGSMPGWGNVFDDQQLADVLNYV 148
                      79************967777778**55555555555556667**********99999998888779********************7 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.036
  Cytochrome_CBB3  11 kknCasCHg..k 20 
                      +++C +CH+  +
       CCG93258.1 251 RSDCLACHKtvT 262
                      679*****9442 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.39
  Cytochrome_CBB3  11 kknCasCHgkggag 24 
                      + +C  CHg+ ga+
       CCG93258.1 317 EVSCIDCHGSIGAQ 330
                      558999**943333 PP

  == domain 4  score: -10.4 bits;  conditional E-value: 9
  Cytochrome_CBB3  13 nCasCHg 19 
                      +Ca+CH 
       CCG93258.1 431 SCATCHN 437
                      5666664 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.015
  Cytochrome_CBB3   7 aalykk.nCasCHg 19 
                      +  y++ +CasCH 
       CCG93258.1 475 KGGYTApTCASCHF 488
                      6678888******5 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.01
  Cytochrome_CBB3   7 aalykknCasCHgkggag 24 
                      ++ + ++C++CH +  ag
       CCG93258.1 527 KEDWISTCSACHSARFAG 544
                      667889******944333 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0072        14      33      58 ..      54      79 ..      38     101 .. 0.75
   2 ?   -3.2  31.1       4.6   9.1e+03      14      73 .]     318     407 ..     237     488 .. 0.70
   3 !   13.6   0.5   2.6e-05     0.051      12      59 ..     479     543 ..     465     566 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0072
  Cytochrome_C7 33 aemekgkskkaevesltCgaCHdgkn 58
                   ++ +k+ ++ +ev+s++C  CH+++ 
     CCG93258.1 54 EKEQKEFIRGQEVFSRSCVGCHQQSG 79
                   34455566666677777999998865 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.6
  Cytochrome_C7  14 ykCtdCHsklfeskakkkmaemekgkskkaeves.ltCgaCHdgknaf......................................svakkaeCak 70 
                     +C dCH+++         a++ ++ +   ++ + +tCg+CH +++a+                                      ++a ++ C+ 
     CCG93258.1 318 VSCIDCHGSI--------GAQKIRHDV-DLHMPDrVTCGSCHVRQFAEseserkqiwphnewpqghpshavdweanvnlaawaampERAVAQGCDM 404
                    5566666666........222222333.23344445566666666664444444444555555555555555555555555555552233333333 PP

  Cytochrome_C7  71 CHt 73 
                    CH+
     CCG93258.1 405 CHY 407
                    332 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 2.6e-05
  Cytochrome_C7  12 tgykCtdCHsklf..eskak............kkmaemekgkskkaeves.lt......CgaCHdgkna 59 
                    t+ +C++CH + +    + +                e+++g  +k+ + + ++      C aCH  ++a
     CCG93258.1 479 TAPTCASCHFEYHgeY-SHNlvrkvrwafnptP---EIAQGIKEKQPWYQqRKedwistCSACHSARFA 543
                    4569*****9996432.2224567777765541...33333333333333222345556*****99887 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.8e-09   3.6e-06       3      91 ..      62     151 ..      60     152 .. 0.69
   2 ?    3.7   0.3      0.07   1.4e+02      11      47 ..     253     296 ..     247     317 .. 0.63
   3 ?   -3.4   5.8         9   1.8e+04      11      28 ..     319     351 ..     310     403 .. 0.59
   4 ?  -17.6  21.5         9   1.8e+04      12      24 ..     432     445 ..     391     529 .. 0.68
   5 ?    1.6   1.0      0.32   6.4e+02      11      19 ..     533     541 ..     522     545 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.8e-09
                  -HHHHHHTTGGGTB-SSSBSSS....--HHHHHH.HTTT-HHHHHHHHTTSS--SSSHH.HHHHHGGGGGGG.TT--HHHHHHHHHHHHTT CS
  Cytochrom_C   3 rGkelftanCaaCHgvegggakqgggptlsgaae.rasaasigasvanpaavsaprddf.ekkkltaemparkerlteqeiadlaaYLksl 91 
                  rG+e+f + C++CH+  g+g  +   p+l g      ++++ +++  +     + ++++   ++++++mp + +  ++q++ad+ +Y+ s 
   CCG93258.1  62 RGQEVFSRSCVGCHQQSGQGLVGS-FPPLVGHVPnIVNSKNGKEYLIDVVLYGLEGPIQvDTQQYNGSMPGWGNVFDDQQLADVLNYVLSA 151
                  8******************99855.55555544303444444444444444444444441456777899999999*************986 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.07
                  TGGGTB-SSSBSSS...........--HHHHHHHTTT-HHHHHH CS
  Cytochrom_C  11 nCaaCHgvegggakqgg.......gptlsgaaerasaasigasv 47 
                  +C aCH+    g+  ++         +++++ +++++a+ ++  
   CCG93258.1 253 DCLACHKTVTPGVFHAWeksihgnLEAIRKLPDQDPKAYKKKEL 296
                  7*****99999988777677766644444444444444444444 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 9
                  TGGGTB.-SSSBSSS................... CS
  Cytochrom_C  11 nCaaCH.gvegggakqgg...............g 28 
                   C  CH ++++++   +                +
   CCG93258.1 319 SCIDCHgSIGAQKIR-HDvdlhmpdrvtcgschV 351
                  799999444444443.323555555555554444 PP

  == domain 4  score: -17.6 bits;  conditional E-value: 9
                  GGGTB.-SSSBSSS CS
  Cytochrom_C  12 CaaCH.gvegggak 24 
                  Ca+CH gv+ ++ +
   CCG93258.1 432 CATCHnGVDHNEFE 445
                  66666555444443 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.32
                  TGGGTB-SS CS
  Cytochrom_C  11 nCaaCHgve 19 
                   C aCH+++
   CCG93258.1 533 TCSACHSAR 541
                  6*****986 PP

>> Paired_CXXCH_1  Doubled CXXCH motif (Paired_CXXCH_1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.036        71       7      16 ..      69      78 ..      64      82 .. 0.67
   2 !    5.9   0.1    0.0053        11       4      15 ..     249     260 ..     247     271 .. 0.84
   3 !   10.1   2.5   0.00026      0.52       1      38 [.     312     351 ..     312     355 .. 0.82
   4 ?    3.0   0.5     0.044        87       1      14 [.     339     351 ..     339     361 .. 0.69
   5 ?   -0.9  14.0      0.73   1.5e+03       6      39 ..     409     438 ..     396     441 .. 0.66
   6 !    9.9   0.3    0.0003      0.61       8      39 ..     482     540 ..     473     543 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.036
  Paired_CXXCH_1  7 geClsCHnph 16
                    ++C  CH+  
      CCG93258.1 69 RSCVGCHQQS 78
                    5577777654 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0053
  Paired_CXXCH_1   4 vaegeClsCHnp 15 
                     v++ +Cl+CH++
      CCG93258.1 249 VSRSDCLACHKT 260
                     66778*****86 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00026
  Paired_CXXCH_1   1 HaPvaegeClsCHnphgsd...npkllkkakgaalCysCHd 38 
                     H+ ++e +C +CH   g++   ++  l       +C sCH 
      CCG93258.1 312 HEQLKEVSCIDCHGSIGAQkirHDVDL-HMPDRVTCGSCHV 351
                     8999999******99999734455556.89999*******6 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.044
  Paired_CXXCH_1   1 HaPvaegeClsCHn 14 
                     H+P +   C sCH 
      CCG93258.1 339 HMPDRVT-CGSCHV 351
                     6666666.888884 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.73
  Paired_CXXCH_1   6 egeClsCHnphgsdnpkllkkakgaalCysCHde 39 
                     ++ C  CH +h+        +a+++  C +CH+ 
      CCG93258.1 409 QNRCDGCHTRHSF---SAA-EARNPLSCATCHNG 438
                     3346666666643...444.899*********86 PP

  == domain 6  score: 9.9 bits;  conditional E-value: 0.0003
  Paired_CXXCH_1   8 eClsCH.nphgsdnpkll...........................kkakgaalCysCHde 39 
                      C sCH + hg+ + + l                           +k++   +C  CH++
      CCG93258.1 482 TCASCHfEYHGE-YSHNLvrkvrwafnptpeiaqgikekqpwyqqRKEDWISTCSACHSA 540
                     5*****555555.55555599999999999999999999999999889999999999985 PP

>> Cytochrom_c3_2  Cytochrome c3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1       0.1     2e+02      21      36 ..      63      78 ..      51      82 .. 0.70
   2 !    6.1   4.4    0.0076        15       8      79 ..     253     324 ..     239     326 .. 0.50
   3 !   10.7   3.6   0.00028      0.55      12      66 ..     303     351 ..     297     359 .. 0.77
   4 ?   -2.2  30.5       2.9   5.8e+03       5      80 .]     316     437 ..     312     552 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.1
                    TTHHHHHHHHHHH--H CS
  Cytochrom_c3_2 21 dkaveeekClsCHgkl 36
                     ++v +++C+ CH++ 
      CCG93258.1 63 GQEVFSRSCVGCHQQS 78
                    4566677788888875 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0076
                     TGGGTSSSST-SSTTHHHHHHHHHHH--HHHCHTTSST....TSSBTTSSCTSSS-GGGTS-TTTSBT.-GGGGT- CS
  Cytochrom_c3_2   8 kCadCHtkekpkkdkaveeekClsCHgkleelakktkea...keanphkshekeleCteCHkeHkkse.kvCaeCH 79 
                     +C  CH++ +p       ++  +s Hg+le+++k  ++     ++++ ++ ek+l+ +   k+H++ +   C +CH
      CCG93258.1 253 DCLACHKTVTPGV----FHAWEKSIHGNLEAIRKLPDQDpkaYKKKELAEVEKQLHSQGILKNHEQLKeVSCIDCH 324
                     4555555555532....22222344555555555443335443333333345666666666666654435666776 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00028
                     TSSSST-SSTTHHHHHHHHHHH--HHHCHTTSST.TSSBTTSSCTSSS-GGGTS- CS
  Cytochrom_c3_2  12 CHtkekpkkdkaveeekClsCHgkleelakktkeakeanphkshekeleCteCHk 66 
                      H++   k++++ +e +C+ CHg+  + + +++      ++ ++ ++++C +CH 
      CCG93258.1 303 LHSQGILKNHEQLKEVSCIDCHGSIGAQKIRHD------VDLHMPDRVTCGSCHV 351
                     58888889999999999*****99987555544......3444468999999996 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.9
                     CT.TGGGTSS...SST-SSTTHHHHHH.....HHHHH--HHHCHTTSST...................................TSSBTTSSCTS CS
  Cytochrom_c3_2   5 egvkCadCHt...kekpkkdkaveeek.....ClsCHgkleelakktkea..................................keanphkshek 57 
                     ++v+C dCH+    +k ++d + +        C sCH ++ + +++++++                                    +  +  h++
      CCG93258.1 316 KEVSCIDCHGsigAQKIRHDVDLH--MpdrvtCGSCHVRQFAESESERKQiwphnewpqghpshavdweanvnlaawaamperaVAQGCDMCHYQ 408
                     689999999944323333333333..13356699999877665555555569999999999999999*******999999876444455567789 PP

                     SS-GGGTS-TTT......SBT-GGGGT-S CS
  Cytochrom_c3_2  58 eleCteCHkeHk......ksekvCaeCHe 80 
                     + +C+ CH+ H+      ++   Ca+CH+
      CCG93258.1 409 QNRCDGCHTRHSfsaaeaRNPLSCATCHN 437
                     999********966654444499****96 PP

>> Cytochrom_CIII  Class III cytochrome C family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0073        15      76      87 ..      68      79 ..      45      83 .. 0.70
   2 ?    1.5   0.3      0.19   3.8e+02      77      86 ..     252     261 ..     234     274 .. 0.68
   3 ?    6.7   9.1    0.0045         9      33     102 .]     253     350 ..     246     350 .. 0.67
   4 ?    7.3   5.8     0.003       5.9      71     102 .]     312     350 ..     282     380 .. 0.58
   5 ?   -3.9  19.8         9   1.8e+04      28     102 .]     406     436 ..     338     493 .. 0.60
   6 ?    6.3   0.9    0.0062        12      33      86 ..     482     541 ..     457     552 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0073
                    TTCHHHHHHHHH CS
  Cytochrom_CIII 76 aksCvgCHkkkk 87
                    ++sCvgCH++  
      CCG93258.1 68 SRSCVGCHQQSG 79
                    379*****9975 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.19
                     TCHHHHHHHH CS
  Cytochrom_CIII  77 ksCvgCHkkk 86 
                     + C+ CHk+ 
      CCG93258.1 252 SDCLACHKTV 261
                     5677777764 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0045
                     THHHTSTT..........CTTSCSTS-CTCTS-SSS.............TTTSTTCHHHHHHCSSTT........TCHHHHHHHHHHTSHH.... CS
  Cytochrom_CIII  33 eCeeCHhk..........eeekeeiekcstcHaeek.............ekkekkslekavHkkkaa........ksCvgCHkkkkkekke.... 92 
                     +C +CH +          ++           H + +             +kke  ++ek +H++            sC++CH +  ++k +    
      CCG93258.1 253 DCLACHKTvtpgvfhaweKS----------IHGNLEairklpdqdpkayKKKELAEVEKQLHSQGILknheqlkeVSCIDCHGSIGAQKIRhdvd 337
                     89999999666666553322..........3333333333333334455666667778888886555666777779*******998887777899 PP

                     ...HCHHSHHHHC CS
  Cytochrom_CIII  93 ...keptkCaech 102
                         + ++C++ch
      CCG93258.1 338 lhmPDRVTCGSCH 350
                     999999******9 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.003
                     HCSSTTTCHHHHHHHHHHTSHH.......HCHHSHHHHC CS
  Cytochrom_CIII  71 HkkkaaksCvgCHkkkkkekke.......keptkCaech 102
                     H++ ++ sC++CH +  ++k +        + ++C++ch
      CCG93258.1 312 HEQLKEVSCIDCHGSIGAQKIRhdvdlhmPDRVTCGSCH 350
                     333333455555554444433344444444445555554 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 9
                     HTTSHTHHHTSTT....CTTSCSTS-CTCTS-SSSTTTSTTCHHHHHHCSSTTTCHHHHHHHHHHTSHHHCHHSHHHHC CS
  Cytochrom_CIII  28 HaevkeCeeCHhk....eeekeeiekcstcHaeekekkekkslekavHkkkaaksCvgCHkkkkkekkekeptkCaech 102
                     H + ++C+ CH       +e                                                 ++p +Ca+ch
      CCG93258.1 406 HYQQNRCDGCHTRhsfsAAEA------------------------------------------------RNPLSCATCH 436
                     333334555554433444444................................................4555555554 PP

  == domain 6  score: 6.3 bits;  conditional E-value: 0.0062
                     THHHTSTTCTTSCSTS-CTC...TS-SSSTTTSTTCHHHHHHCSSTT...TCHHHHHHHH CS
  Cytochrom_CIII  33 eCeeCHhkeeekeeiekcst...cHaeekekkekkslekavHkkkaa...ksCvgCHkkk 86 
                     +C++CH + +++ + + + +   + + + e ++  + ++ + +++++   ++C  CH+++
      CCG93258.1 482 TCASCHFEYHGEYSHNLVRKvrwAFNPTPEIAQGIKEKQPWYQQRKEdwiSTCSACHSAR 541
                     899**99966555555555432355544322222222333443333335689****9875 PP

>> Thg1  tRNAHis guanylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.8   5.6e+03      56      86 ..      31      62 ..      25      73 .. 0.75
   2 ?   12.0   0.0   8.3e-05      0.17      62     119 ..     501     557 ..     453     562 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.8
        Thg1 56 lvkef.edivlaYgqSDEislvlsketklynr 86
                ++++  ++++  Y   +E s+  +ke+k + r
  CCG93258.1 31 VLDKWlQNLTAKYVLAEEPSFSREKEQKEFIR 62
                55555468889999999999999999998876 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 8.3e-05
        Thg1  62 divlaYgqSDEislvlsketklynrraqklvslvaslftaafvkllskafeelpsFDa 119
                 ++  a++ + Ei   +++++  y++r++  +s+++ + +a+f  ++ + ++  ++FD+
  CCG93258.1 501 KVRWAFNPTPEIAQGIKEKQPWYQQRKEDWISTCSACHSARFAGEWLETAD-QAIFDG 557
                 4578899999999999********************************994.599998 PP

>> DHC  Dihaem cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0063        12      50     116 ..      15      81 ..      11      83 .. 0.73
   2 ?    5.4   0.0     0.017        33     101     118 .]     249     266 ..     229     266 .. 0.87
   3 ?    1.7   0.1      0.23   4.5e+02      91     113 ..     305     327 ..     270     332 .. 0.70
   4 ?    0.3   0.0      0.61   1.2e+03       4      11 ..     345     352 ..     342     365 .. 0.83
   5 ?   -0.7   1.5       1.3   2.5e+03      97     113 ..     393     409 ..     381     419 .. 0.70
   6 ?    3.4   1.2     0.067   1.3e+02      94     118 .]     420     444 ..     415     444 .. 0.83
   7 ?    2.9   0.2     0.096   1.9e+02       4      15 ..     482     493 ..     479     504 .. 0.86
   8 ?    3.6   0.0     0.058   1.1e+02      96     112 ..     524     540 ..     512     550 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0063
                 HHHHTSTTTTS-..-GGGTT-..TT---S-GGGSHHHHHHHCC--HHHHH..HHSSTT-GGGT-TTGGGT CS
         DHC  50 yLeanaaekseak.kkilksl..keeiplritesryfkkkHkeveekvlkrkkvkslsnCaaCHkkaekg 116
                 yL++  a++++a+ k +l+++  + ++ + ++e + f ++ ++ e  +++ ++v    +C+ CH++  +g
  CCG93258.1  15 YLSSLVAQENTAQgKSVLDKWlqNLTAKYVLAEEPSFSREKEQKE--FIRGQEVF-SRSCVGCHQQSGQG 81 
                 78888787777776777777763445567899*****99987654..66666665.568******98776 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.017
                 SSTT-GGGT-TTGGGT-- CS
         DHC 101 kslsnCaaCHkkaekgvf 118
                  s s C aCHk+++ gvf
  CCG93258.1 249 VSRSDCLACHKTVTPGVF 266
                 57899*******999887 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.23
                 -HHHHH..HHSSTT-GGGT-TTG CS
         DHC  91 eekvlkrkkvkslsnCaaCHkka 113
                 ++ +lk++++ +  +C+ CH ++
  CCG93258.1 305 SQGILKNHEQLKEVSCIDCHGSI 327
                 344678888889999*****765 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.61
                 HTTSSS-- CS
         DHC   4 eCgsCHla 11 
                  CgsCH+ 
  CCG93258.1 345 TCGSCHVR 352
                 69999985 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.3
                 ..HHSSTT-GGGT-TTG CS
         DHC  97 rkkvkslsnCaaCHkka 113
                  ++   ++ C  CH + 
  CCG93258.1 393 MPERAVAQGCDMCHYQQ 409
                 56667778888888765 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.067
                 HHH..HHSSTT-GGGT-TTGGGT-- CS
         DHC  94 vlkrkkvkslsnCaaCHkkaekgvf 118
                  ++ +++++  +Ca+CH+++++ +f
  CCG93258.1 420 SFSAAEARNPLSCATCHNGVDHNEF 444
                 56778889999********998876 PP

  == domain 7  score: 2.9 bits;  conditional E-value: 0.096
                 HTTSSS----GG CS
         DHC   4 eCgsCHlayppe 15 
                  C+sCH+ y+ e
  CCG93258.1 482 TCASCHFEYHGE 493
                 7******99865 PP

  == domain 8  score: 3.6 bits;  conditional E-value: 0.058
                 H..HHSSTT-GGGT-TT CS
         DHC  96 krkkvkslsnCaaCHkk 112
                 +++k   +s+C+aCH+ 
  CCG93258.1 524 QQRKEDWISTCSACHSA 540
                 45555667889999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 4794.46
//
Query:       CCG93259.1  [L=77]
Description: hypothetical protein MFUM_970029 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 571.68
//
Query:       CCG93260.1  [L=69]
Description: hypothetical protein MFUM_970030 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 526.98
//
Query:       CCG93261.1  [L=167]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-18   65.4   1.9    6.1e-18   65.0   1.9    1.2  1  DUF1318   Protein of unknown function (DUF1318)
  ------ inclusion threshold ------
      0.078   13.0   0.1       0.13   12.3   0.1    1.3  1  HisKA     His Kinase A (phospho-acceptor) domain


Domain annotation for each model (and alignments):
>> DUF1318  Protein of unknown function (DUF1318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   1.9   6.8e-22   6.1e-18       4      92 .]      70     162 ..      67     162 .. 0.94

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 6.8e-22
     DUF1318   4 aalkldeakaqGlvGetadGylgvvkaa.aaeara....lvkaiNakRkavYteiAaknglsleevaklaaekliekaksGeyvqeanGkWvkK 92 
                 ++ +++++k++ ++Ge +dGyl++vk++ ++e+r+    +v+++N++R+ +Y+  A+++g + ++++k +++k+ ++a +Ge++++++G W++K
  CCG93261.1  70 RMGEIQTLKNNRMIGEGKDGYLHIVKSTeDEEYRNyiqkIVDEENRDRQILYNLEAKRSGKEISQIEKEYGQKWQSRAFKGEMIEGEEG-WKTK 162
                 567899**********************88888888888**********************************************9999.*987 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.5e-05      0.13      22      58 ..      89     123 ..      88     131 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.5e-05
                 HHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHH CS
       HisKA  22 gnaeaLkregklteelkeyletiesearrldhlvedl 58 
                 g++++ k +   +ee + y+++i++e++r ++++ +l
  CCG93261.1  89 GYLHIVKST--EDEEYRNYIQKIVDEENRDRQILYNL 123
                 899999995..88********************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1138  (0.0634726); expected 358.6 (0.02)
Passed bias filter:                      665  (0.0370907); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1147.66
//
Query:       CCG93262.1  [L=99]
Description: hypothetical protein MFUM_970032 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-06   25.5   1.8    1.4e-05   24.7   0.6    2.0  2  MerR      MerR family regulatory protein
  ------ inclusion threshold ------
      0.041   14.0   0.1      0.078   13.1   0.1    1.5  1  MerR_1    MerR HTH family regulatory protein


Domain annotation for each model (and alignments):
>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.6   1.6e-09   1.4e-05      17      38 .]      22      43 ..      15      43 .. 0.86
   2 ?   -1.2   0.0       0.2   1.8e+03      10      16 ..      56      62 ..      54      64 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.6e-09
                HHHHHTT.SSTSEEETTTSSEEE CS
        MerR 17 RyYEreG.LipppeRtegGyRlY 38
                R++Ere  L+ p +Rt+gG+R+Y
  CCG93262.1 22 RRWEREDkLL-PLTRTAGGHRRY 43
                9*****6499.***********9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.2
                TTTHHHH CS
        MerR 10 GvsprtL 16
                 vs rt+
  CCG93262.1 56 EVSRRTI 62
                5888887 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   8.7e-06     0.078      18      38 ..      22      43 ..      15      50 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.7e-06
                HHHHHHTT.-S-EE-TTS-EEE CS
      MerR_1 18 rywekegl.lkpkrteggrryY 38
                r we+e + l+  rt gg+r+Y
  CCG93262.1 22 RRWEREDKlLPLTRTAGGHRRY 43
                99******788888*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 751.71
//
Query:       CCG93263.1  [L=65]
Description: hypothetical protein MFUM_970033 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        83  (0.00462937); expected 358.6 (0.02)
Passed bias filter:                       75  (0.00418317); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 509.68
//
Query:       CCG93264.1  [L=225]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.18   12.2   1.8       0.81   10.2   0.7    2.2  2  Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) pr


Domain annotation for each model (and alignments):
>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.7   4.5e-05      0.81      51      76 ..      10      35 ..       4      36 .. 0.91
   2 ?    0.5   0.0     0.049   8.8e+02      10      20 ..      64      74 ..      62      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4.5e-05
  Fungal_TACC 51 kqeieqLkkqleaerkEKqeLlklld 76
                 +++ie L ++l  +rkEK  L++ll 
   CCG93264.1 10 EKDIEVLAQKLGKNRKEKIALIHLLK 35
                 789*********************97 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.049
  Fungal_TACC 10 aedLYvqYSsK 20
                 + +LY+qY  K
   CCG93264.1 64 SAQLYFQYLGK 74
                 679*****665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 1756.54
//
Query:       CCG93265.1  [L=171]
Description: Isopentenyl-diphosphate delta-isomerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-16   59.1   0.0    5.6e-16   58.8   0.0    1.1  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   3.1e-20   5.6e-16       2     119 ..      29     143 ..      28     155 .. 0.78

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 3.1e-20
                 EEEEEEEEEEETTSEEEEEEES..SSSTTT.EE.SSEEECBTTSHHHHHHHHHHHHHHSEEE..EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECS CS
       NUDIX   2 lrravgvvllnekgevLlvrrs..kkpfpg.We.lPgGkvepgEtpeeAArREleEEtGlea..ellellgrlhylapydgpygdeheilyvfleeveg 94 
                 ++rav ++l n+++ev+l++rs  k+  p+ W+  + G+v  gE++ +AA+REl EE+Gl+   +l++l+      ++ d++    +e++ v+l+  +g
  CCG93265.1  29 KHRAVHILLQNQNKEVFLQKRSplKDVNPNcWDsSCSGHVLSGEDYDTAAHRELTEELGLQLdqPLIKLFK-----LSADAKT--GNEFIWVYLGFSNG 120
                 79*********************99999999*77*************************744215556666.....2222222..67999999999999 PP

                 GCSSTSTTTEEEEEEEEHHHHHHHH CS
       NUDIX  95 elepndenevsevrwvpleellkek 119
                   ++n + e++e  ++++  +   k
  CCG93265.1 121 PFQLN-PQEIAEGNFYSFSWI-NFK 143
                 99998.888888877777766.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1119.50
//
Query:       CCG93266.1  [L=208]
Description: Predicted membrane protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-38  131.7  11.9    3.6e-38  131.5  11.9    1.0  1  HlyIII      Haemolysin-III related
  ------ inclusion threshold ------
       0.01   15.3  11.5      0.097   12.1   2.8    2.1  2  Ceramidase  Ceramidase
      0.011   16.0   8.5      0.041   14.2   7.2    2.3  2  DUF3522     Protein of unknown function (DUF3522)
       0.92   10.0   3.2        5.6    7.5   0.4    2.8  3  DUF4231     Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.5  11.9   8.1e-42   3.6e-38       4     224 .]       4     199 ..       1     199 [. 0.91

  Alignments for each domain:
  == domain 1  score: 131.5 bits;  conditional E-value: 8.1e-42
      HlyIII   4 hnEtlniwtHllgailfivlailllslaevkensklakvvvlvfllgallcllcSalyHtlsihseeklrkffaklDysgIslliagsylplilyalak 102
                  +E +n ++H++ga+l+i+ + +l+++   +++   + +  l+++l++ +++++S+lyH l+i+s+  +   f+klD+++I++lia++y+p+i+ a  k
  CCG93266.1   4 IREPFNTYSHVFGAMLSIIGLEVLFFKDLRNSI---NPLDNLIYGLSLTFMFVSSSLYHALDITSK--MLPSFRKLDHCSIYILIAATYTPVIVKAADK 97 
                 5799*************9999988888876665...578889*********************999..9999************************966 PP

      HlyIII 103 apkagllylslilalgvlgiisklvplfsrpearplravlfillgllgvipllhlllvltqlgeaaelalvllvlggvlylvGavfYalrvPErlkpgk 201
                   +++ ++l+l++ ++++gi++k++        r+l++ +++ +g++gv++l    + l++++      l + ++gg++y++Ga+ Y+l+     +p++
  CCG93266.1  98 --EYRVMLLALMWSIAITGILIKIFFP---YPSRWLYTGFYLGMGWVGVLFLPR--IHLSKVS------LDYALSGGIVYTIGAFSYMLK-----WPQS 178
                 ..789999*****************99...666********************9..5566577......9********************.....5555 PP

      HlyIII 202 fdivghsHqiFHvfvvlgalfhy 224
                     +++H+++H++v+lg++f+y
  CCG93266.1 179 R--NFNFHNLWHLMVLLGSFFMY 199
                 4..689**************987 PP

>> Ceramidase  Ceramidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.8   2.2e-05     0.097      23     129 ..       4     120 ..       1     171 [. 0.74
   2 ?    8.6   1.6   0.00025       1.1     207     235 ..     175     203 ..     170     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.2e-05
  Ceramidase  23 iAEfvNTlsnllfillallgi....ynaakkkle.krfllaylglalvGlgSalFHaTLkyetQll......Delsmiyatalvlyavfsekksrstrv 110
                 i E +NT s ++ ++l+++g+    ++  +++ +    l+  l+l+++ + S l+Ha L +   +l      D  s+ +++a+++  v+ +   + +rv
  CCG93266.1   4 IREPFNTYSHVFGAMLSIIGLevlfFKDLRNSINpLDNLIYGLSLTFMFVSSSLYHA-LDITSKMLpsfrklDHCSIYILIAATYTPVIVKAADKEYRV 101
                 6699****************976664444566552445555688999999******8.55555555444555******999999999999887888888 PP

  Ceramidase 111 llgvlltalavvvtllylv 129
                 +l  l+ ++a++  l+ ++
  CCG93266.1 102 MLLALMWSIAITGILIKIF 120
                 7777766666655555544 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00025
  Ceramidase 207 lplgvllelHgwWHiltgigayilivlle 235
                 +p +  +++H +WH+++ +g++++ +++ 
  CCG93266.1 175 WPQSRNFNFHNLWHLMVLLGSFFMYLMVY 203
                 555556789************99988875 PP

>> DUF3522  Protein of unknown function (DUF3522)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       0.2   9.2e+02      83     105 ..       3      25 ..       1      36 [. 0.65
   2 ?   14.2   7.2   9.1e-06     0.041      36     187 ..      49     188 ..      42     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.2
     DUF3522  83 dldeklksllhylglllvailqe 105
                 +++e+++++ h++g++l +i+ e
  CCG93266.1   3 KIREPFNTYSHVFGAMLSIIGLE 25 
                 45666666677777776666543 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 9.1e-06
     DUF3522  36 tftmlfStlYHacdspgtfclekydvlqlsdfilsilavwvtlvyladldeklks..llhylglllvailqekdrwslantiipilvgllillvswlie 132
                 tf +++S lYHa d   +  l +++ l  ++ +  i+a    ++  a+ +e +++  +l ++++++ ++++   ++ ++ + +  ++g+  + v +   
  CCG93266.1  49 TFMFVSSSLYHALDI-TSKMLPSFRKLDHCSIYILIAATYTPVIVKAADKEYRVMllALMWSIAITGILIKIFFPYPSRWLYTGFYLGMGWVGVLF--- 143
                 8999**********7.55566777778888888888887776666555554444411566778888889999999988888888999999999999... PP

     DUF3522 133 cvkkrklypsllrrrlkrlnlqqllpgllllalAlfllgldetednyrivHslWH 187
                           l r +l+++ l ++l g ++ ++++f++ l   +++ + +H lWH
  CCG93266.1 144 ----------LPRIHLSKVSLDYALSGGIVYTIGAFSYMLKWPQSRNFNFHNLWH 188
                 ..........445999************************99999999******* PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.19   8.4e+02      23      62 ..      11      55 ..       2      67 .. 0.80
   2 ?    7.5   0.4    0.0013       5.6       7      69 ..      65     123 ..      59     129 .. 0.59
   3 ?    0.9   0.0      0.14   6.2e+02      10      34 ..     177     201 ..     168     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.19
     DUF4231 23 itivlgallpilvs.....sklgagvsvlkiltallsalvailaa 62
                 + v+ga+l+i+       ++l+ + + l  l+ +ls++  ++++
  CCG93266.1 11 YSHVFGAMLSIIGLevlffKDLRNSINPLDNLIYGLSLTFMFVSS 55
                567899999999999999977888888888888888888777665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0013
     DUF4231   7 ekkasrakrrfrllrlitivlgallpilvssklgagvsvlkiltallsalvailaaleeffry 69 
                 +k   +++++ + +++ ++++++++p++v    +a+ +   +l al+ ++++    +  ff y
  CCG93266.1  65 SKMLPSFRKLDH-CSIYILIAATYTPVIVK---AADKEYRVMLLALMWSIAITGILIKIFFPY 123
                 555556666667.9****************...444444444444433333333333345555 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.14
     DUF4231  10 asrakrrfrllrlitivlgallpil 34 
                 +sr+++++ l +l+ ++++++  ++
  CCG93266.1 177 QSRNFNFHNLWHLMVLLGSFFMYLM 201
                 78999***********999987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1504.71
//
Query:       CCG93267.1  [L=389]
Description: Predicted secreted hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-52  177.1   0.3    6.8e-52  176.5   0.3    1.3  1  CrtC         CrtC N-terminal lipocalin domain
    1.2e-36  125.9   0.0    1.9e-36  125.2   0.0    1.3  1  Lipocalin_9  Lipocalin-like domain


Domain annotation for each model (and alignments):
>> CrtC  CrtC N-terminal lipocalin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.5   0.3   7.6e-56   6.8e-52       1     164 [.      59     232 ..      59     233 .. 0.94

  Alignments for each domain:
  == domain 1  score: 176.5 bits;  conditional E-value: 7.6e-56
                 EEEEEEEEEEE-TT--EEEEEEEEEEE----......S.SS--EEEEEEEEEE-TTTSS-EEEEEEEEESS-TTTEEE-SSEEEETTEEEEE.TS...- CS
        CrtC   1 iEwWYltGnLedeegreyGfqltffrsalep......aawateqlymahaavtdveagkflseervargglglagaeekpfkvrlddWqlks.ssellp 92 
                 +EwWY+tGnL +e+ +++Gfq+t+fr+++        ++w  +++y+ah+a++d++++kf++ er +rg+l+lag+ e  +  +++ W+l++ +++ ++
  CCG93267.1  59 TEWWYFTGNLYGENREPFGFQWTLFRQGIFSsppqkiSKWGLRDIYFAHFALSDIRRKKFYAYERADRGALELAGVLEGSMGGWIRGWELRTiDNTKEK 157
                 7*************************9984455665438***************************************************99*99999* PP

                 EEEEEE-SSEEEEEEEE--S--EE-TBTTEEE-SSSTT-EEEEEEEEEEEEEEEEEE...EEEEEEEEEEEEEEE CS
        CrtC  93 arlrasaegfsldLtlsstkppvlqgdnGysrkgaepeqasyYySqprlavkGtltl...kvsVtGeaWlDhews 164
                 ++++a+++++++dL+l++ kppvl+g+nG+s+k+++++ asyYyS++rl ++G++++   +  V+G++W+Dhe++
  CCG93267.1 158 FHIHANEGEIAIDLNLEACKPPVLHGENGLSKKADQKGCASYYYSFTRLMTNGSIRIsnrEWLVHGTSWFDHEFT 232
                 ********************************************************9876666**********97 PP

>> Lipocalin_9  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.0   2.1e-40   1.9e-36       1     130 []     236     370 ..     236     370 .. 0.92

  Alignments for each domain:
  == domain 1  score: 125.2 bits;  conditional E-value: 2.1e-40
                  S-TTEEEEEEEEEEETTS-EEEEEEEEETTS-EEEEE..EEEE-TTS-EEEE-GGGEEEEEEEEEE-TTT--EEEE....EEEETTEEEEEEES-S-- CS
  Lipocalin_9   1 laksqvGWdwfslqlddgsalmlfrlrkkdgsaeeastsgtliaadgeatalskediklepletwtspktgakyPvkwqvelpseeldltvepllkdq 98 
                  l++++vGWdwf++qld +++lml++lr+k+g+ +++s  gt++ ++ +++ l+ked+++  + +w+sp+t+a+yP+ w+++l + +++++v+p ++ q
   CCG93267.1 236 LGNNEVGWDWFAIQLDGNEELMLYCLRTKEGAFDSNSG-GTWVGKN-NVRILKKEDFSVDRIAFWKSPNTKATYPAGWKIKLFDPPIEIIVKPKMASQ 331
                  56899***************************888885.****665.68************************************************* PP

                  EEE....T--EEEEEEEEETT......EEEEEEEEEE-- CS
  Lipocalin_9  99 eld....ttipYWEGavkvegsgs...vnGrGYlEltGY 130
                  el       ++YWEGav+veg+++   v+G+GY+EltGY
   CCG93267.1 332 ELVlhqlGFLAYWEGAVSVEGEKEgipVHGEGYVELTGY 370
                  **98774449*********6655568*99*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2518.63
//
Query:       CCG93268.1  [L=850]
Description: ABC-type antimicrobial peptide transport system,permease component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-24   84.6  51.0    4.9e-14   52.6  10.1    6.1  6  FtsX             FtsX-like permease family
    1.1e-20   74.8   0.0    4.3e-09   37.0   0.0    2.6  2  MacB_PCD         MacB-like periplasmic core domain
    2.2e-05   24.4   0.0       0.02   14.9   0.0    2.3  2  Molydop_binding  Molydopterin dinucleotide binding domain
    6.1e-05   23.3   0.6        0.2   12.0   0.0    3.0  3  PEX-2N           Peroxisome biogenesis factor 1, N-terminal
     0.0047   16.8   0.0      0.028   14.3   0.0    2.2  2  Rho_RNA_bind     Rho termination factor, RNA-binding domain
  ------ inclusion threshold ------
       0.04   14.1   0.0       0.87    9.8   0.0    2.4  2  CDC48_N          Cell division protein 48 (CDC48), N-terminal


Domain annotation for each model (and alignments):
>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.11   3.1e+02      27      56 ..      21      51 ..       9      72 .. 0.62
   2 ?   -1.1   0.7      0.91   2.7e+03      16      37 ..     253     275 ..     249     286 .. 0.66
   3 !   44.1   8.8   7.1e-15   2.1e-11       1      96 []     289     389 ..     289     389 .. 0.96
   4 ?    1.0   3.6       0.2   6.1e+02      33      86 ..     409     461 ..     402     467 .. 0.76
   5 ?    4.1   0.0     0.021        63      18      56 ..     481     519 ..     477     575 .. 0.82
   6 !   52.6  10.1   1.6e-17   4.9e-14       2      95 ..     749     842 ..     748     843 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.11
        FtsX 27 litlvalviGlgl.gllaaqllsdvllssvf 56
                l+ l  ++i+lg+  ++a+ql+++  l+s+ 
  CCG93268.1 21 LFLLNVFCIALGVaNFVAIQLINHSALESFK 51
                4444444444445155666888887777765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.91
        FtsX  16 qvlllllteillitlvalviG.l 37 
                 ++l+ + + + +++l++l++G +
  CCG93268.1 253 KMLGSFQLNLTALSLISLFVGmF 275
                 67777777888888888888842 PP

  == domain 3  score: 44.1 bits;  conditional E-value: 7.1e-15
        FtsX   1 kreigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfs.....selkisidlitvliiivlllllallagllsiskilkk 94 
                 ++ei++lr+lG+  k ++   l+e++li+l++++iG+ +g++++  l ++++ss+ s     s  +i+i++i+++++++++ll + +a+l+++  ++k+
  CCG93268.1 289 RSEIALLRCLGVGPKAIIIACLGESMLIGLIGIAIGIPAGYFLSTKLISWVSSSLTSlyllsSIEHIFISPIQFILAVGMGLLAVGVASLFPSMEASKI 387
                 68****************************************************88777777***********************************99 PP

        FtsX  95 ep 96 
                  p
  CCG93268.1 388 PP 389
                 76 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.2
        FtsX  33 lviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagll 86 
                  ++G+gl+ll+a l+s +  ++   s l++   l+t+l +++l+ l++ l++ l
  CCG93268.1 409 WFLGVGLSLLLAFLFSYFSFKENL-SVLSFGAALFTILSFAFLSPLVCQLIVRL 461
                 467777788888777777777755.88889999999999998888888888655 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.021
        FtsX  18 lllllteillitlvalviGlglgllaaqllsdvllssvf 56 
                  + +lt ++l+t++a+vi++ + ++   +  d++l++ +
  CCG93268.1 481 HRNVLTVGALLTALAMVISVSIMIKSFRYTVDGWLKQSV 519
                 566889999999999999999999999999999988844 PP

  == domain 6  score: 52.6 bits;  conditional E-value: 1.6e-17
        FtsX   2 reigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskilkke 95 
                 rei+++r++G++k  v+ l+++e+ l++++a+++G+++g+++a +l  v++ s+f+  +++s+++ +++ + + +l++a++a+ll++++++k +
  CCG93268.1 749 REIAVMRSIGASKSMVFTLVIGESGLVGIIASFLGVIAGFALAVVLTYVINRSFFGWTIDWSTPWAIIFWLPFAVLIIAIMASLLPAYQLSKDN 842
                 8*****************************************************************************************9965 PP

>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0     6e-12   1.8e-08       2     148 ..      23     180 ..      22     243 .. 0.72
   2 !   37.0   0.0   1.4e-12   4.3e-09       2     194 ..     484     690 ..     484     691 .. 0.73

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 6e-12
    MacB_PCD   2 lltvLGiaiGvaaviaivslgeglqasvlsqisdl....gnlvtvtpgkgsgeslsd...pdvealrrevp.veavapvv.tvrgggsg.eeevtvvgv 90 
                 ll+v+ ia+Gva ++ai ++ +++++s++ +i  l    +n + +      + ++++   +dv  l+   p ve ++p++ +v+  ++  +e+  vvgv
  CCG93268.1  23 LLNVFCIALGVANFVAIQLINHSALESFKASID-LvagkAN-LEIVAE---SYPFDEkilADV--LK--KPsVEVATPILeQVSMLDKYpGEYLDVVGV 112
                 79*****************************99.4453233.444443...334443111333..43..488******98744344332355688***9 PP

    MacB_PCD  91 dpdyfk...vfglklaeGrffteadlr..ggpnvvvigeelaerlf.pvGdtirl......kpftVvGvl 148
                 d  +++   +++++la+G +  e+ l+   ++++v i+++l +rl  ++Gdti l      ++++V   l
  CCG93268.1 113 D--FLTdqpIRNFQLASGVNKKEDILDflKDSRAVGINKKLGQRLGiKLGDTIHLrtpegiVRLKVHSFL 180
                 9..77778899998899*544443333335888888********99*******99988877777776666 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 1.4e-12
    MacB_PCD   2 lltvLGiaiGvaaviaivslgeglqasvlsqisdl..gnlvtvtpgk....gsgeslsdpdve.alrrevpveavapvv..tvrgggsgeeevtvvgvd 91 
                 +ltv ++  + a vi++ +++ +++ +v+  ++++  ++l+ vt+ +    g ++sls +d+e +++ + ++e+v +++   + +++s  + ++++ + 
  CCG93268.1 484 VLTVGALLTALAMVISVSIMIKSFRYTVDGWLKQSvrADLF-VTTAAnlvsGIHQSLS-RDAEvLIENDNRIESVDRYYefRSEFRNSPIKISSISFPV 580
                 699***************************99988766655.5554457776666666.456534544445******9865444554322235677744 PP

    MacB_PCD  92 pdyfkvfglklaeGrffteadlr..ggpnvvvigeelaerlf..pvGdtirl......kpftVvGvledppgsgsalgddavylplttl.......qrr 173
                 +++  ++ +    G   +++ +r  +g+n + i+e+l ++ f  + Gd+i+l      ++f++ Gv++d++   + +g   v+l+ +tl        ++
  CCG93268.1 581 AAEKNNLEF--RRG--NPKELFRqaTGSNRIFINESLSRK-FglKEGDVITLktglgmINFEIFGVFKDFT---TEFG--LVLLDRQTLirfwninTSN 669
                 366666777..346..66666664359999**********.77*99*********************9964...3345..5666644443333332568 PP

    MacB_PCD 174 sitvrlkdgadleaaaaelek 194
                 s+++ lk++  +++++++l+k
  CCG93268.1 670 SLALYLKNPKEAQEVKKDLDK 690
                 8***************99986 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.8e-06      0.02      21      74 ..     135     187 ..     118     214 .. 0.82
   2 !    7.0   0.0    0.0019       5.7      26      61 ..     602     636 ..     583     641 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.8e-06
                      CHHHHCSSS-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEE CS
  Molydop_binding  21 vlrlakpepevveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvv 74 
                      +l   k+++  v in +  ++lGik Gd+++++++ G v+++++   ++  G +
       CCG93268.1 135 ILDFLKDSR-AVGINKKLGQRLGIKLGDTIHLRTPEGIVRLKVHSFLEMESGAI 187
                      444455555.999******************************99998888877 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0019
                      CSSS.-EEEEEHHHHHHHT--TT-EEEEEETTEEEEE CS
  Molydop_binding  26 kpep.evveinpedAaalGikdGdlVevesrrGsvev 61 
                         + +++ in+   ++ G+k+Gd +++++  G + +
       CCG93268.1 602 T--GsNRIFINESLSRKFGLKEGDVITLKTGLGMINF 636
                      2..2469**********************99888765 PP

>> PEX-2N  Peroxisome biogenesis factor 1, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   6.6e-05       0.2      54      80 ..     140     166 ..     133     169 .. 0.89
   2 ?   -2.7   0.0       2.5   7.4e+03      53      68 ..     219     234 ..     199     235 .. 0.73
   3 !    8.3   0.0   0.00098       2.9      51      80 ..     599     628 ..     595     630 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
                 ----EEEEEHHHHHHTT--TT-EEEEE CS
      PEX-2N  54 qdeneveinrqlgeklGlkdGeqvfLr 80 
                 +d++ v in++lg++lG+k G+ + Lr
  CCG93268.1 140 KDSRAVGINKKLGQRLGIKLGDTIHLR 166
                 57789*****************99998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.5
                 -----EEEEEHHHHHH CS
      PEX-2N  53 sqdeneveinrqlgek 68 
                 ++++n++ei+r l e 
  CCG93268.1 219 KSQSNRMEIARALQEE 234
                 4567788888888776 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00098
                 -------EEEEEHHHHHHTT--TT-EEEEE CS
      PEX-2N  51 sssqdeneveinrqlgeklGlkdGeqvfLr 80 
                 ++ +++n++ in  l++k Glk+G+ + L+
  CCG93268.1 599 RQATGSNRIFINESLSRKFGLKEGDVITLK 628
                 5678999*****************988776 PP

>> Rho_RNA_bind  Rho termination factor, RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         1     3e+03      23      46 ..     141     164 ..     135     179 .. 0.76
   2 !   14.3   0.0   9.3e-06     0.028      22      46 ..     602     626 ..     595     631 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1
                   -TT-EEE-CCCCCCTT--TT-EEE CS
  Rho_RNA_bind  23 gpedvYVsasqirkfgLrtGDave 46 
                    ++ v +++++ +++g++ GD+++
    CCG93268.1 141 DSRAVGINKKLGQRLGIKLGDTIH 164
                   5556667777778999*****996 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 9.3e-06
                   --TT-EEE-CCCCCCTT--TT-EEE CS
  Rho_RNA_bind  22 pgpedvYVsasqirkfgLrtGDave 46 
                   +g++ +++++s+ rkfgL++GD+++
    CCG93268.1 602 TGSNRIFINESLSRKFGLKEGDVIT 626
                   6899*******************98 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.12   3.7e+02      17      38 ..     145     166 ..     137     182 .. 0.66
   2 ?    9.8   0.0   0.00029      0.87       9      38 ..     599     628 ..     593     634 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.12
                 EEE-HHHHHHHTS-TTSEEEEE CS
     CDC48_N  17 vridpedmeelglepgdvveie 38 
                 v i+++  ++lg++ gd++ ++
  CCG93268.1 145 VGINKKLGQRLGIKLGDTIHLR 166
                 4455555555555555555554 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00029
                 S-CSSTTEEEE-HHHHHHHTS-TTSEEEEE CS
     CDC48_N   9 qedvgrgivridpedmeelglepgdvveie 38 
                  + +g +++ i+++  +++gl++gdv++++
  CCG93268.1 599 RQATGSNRIFINESLSRKFGLKEGDVITLK 628
                 56799***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1147  (0.0639746); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 5281.93
//
Query:       CCG93269.1  [L=225]
Description: ABC-type antimicrobial peptide transport system,ATPase component [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-34  119.3   0.0    2.6e-34  118.7   0.0    1.3  1  ABC_tran      ABC transporter
    6.4e-06   26.5   0.3      0.044   14.1   0.0    2.1  2  AAA_22        AAA domain
    6.6e-06   25.7   0.1     0.0032   16.9   0.1    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
    7.9e-06   25.9   0.5      0.059   13.2   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    5.9e-05   23.5   0.0    0.00011   22.6   0.0    1.4  1  AAA_16        AAA ATPase domain
    0.00028   20.5   0.0       0.13   11.9   0.0    2.2  2  AAA_25        AAA domain
     0.0019   18.1   0.0     0.0036   17.2   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
     0.0023   17.7   0.0     0.0045   16.7   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
     0.0061   16.5   0.0      0.016   15.2   0.0    1.6  2  Rad17         Rad17 P-loop domain
  ------ inclusion threshold ------
      0.025   15.0   0.0        0.1   13.0   0.0    1.9  2  RNA_helicase  RNA helicase
      0.026   14.5   0.1        0.1   12.5   0.0    1.9  2  NACHT         NACHT domain
      0.028   14.6   0.0      0.064   13.5   0.0    1.6  2  AAA_28        AAA domain
      0.029   14.1   0.2       0.85    9.3   0.0    2.2  2  IstB_IS21     IstB-like ATP binding protein
      0.038   14.4   0.0       0.12   12.8   0.0    1.8  2  AAA           ATPase family associated with various cellular 
      0.042   13.3   0.1        4.7    6.6   0.1    2.1  2  TniB          Bacterial TniB protein
      0.048   13.6   0.1        1.4    8.8   0.0    2.1  2  NTPase_1      NTPase
      0.061   13.4   0.0       0.21   11.7   0.0    1.8  2  MMR_HSR1      50S ribosome-binding GTPase
      0.066   12.9   0.0          1    9.0   0.0    2.0  2  AAA_15        AAA ATPase domain
      0.076   12.4   0.1       0.55    9.6   0.0    2.1  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.099   12.7   0.0        0.1   12.6   0.0    1.4  1  Dynamin_N     Dynamin family
       0.11   12.5   0.0       0.26   11.3   0.0    1.6  1  AAA_5         AAA domain (dynein-related subfamily)
       0.11   12.7   0.1       0.36   11.0   0.0    1.7  2  AAA_33        AAA domain
       0.12   11.9   0.4        1.3    8.5   0.0    2.1  2  FeoB_N        Ferrous iron transport protein B
       0.13   12.8   0.0       0.21   12.1   0.0    1.3  1  AAA_23        AAA domain
       0.16   11.4   0.2         11    5.4   0.0    2.1  2  PhoH          PhoH-like protein
       0.16   11.1   0.0       0.16   11.1   0.0    1.1  1  G-alpha       G-protein alpha subunit
       0.17   12.4   0.0       0.42   11.2   0.0    1.7  1  AAA_18        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   0.0   3.9e-37   2.6e-34       1     136 [.      25     173 ..      25     174 .. 0.93

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 3.9e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCE.EEE-SS--S-TTSBHHHH.............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.............xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkei.gvlpqepqlfpeltvren.............esd 82 
                 l++ +l++++ge +a+vG++G+GKStLl l+ag  +pt+Gei +dg +++    ++l +lr +i g+++q  +l p+lt+ +n             e++
  CCG93269.1  25 LRKANLEIYPGESIALVGPSGCGKSTLLHLIAGIDTPTQGEIYVDGYPFHLlkeEKLAKLRGSIlGIVFQFFNLLPTLTALDNvmlpallqgvsplEAS 123
                 56789*****************************************99988777777777766549********************************* PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++++l+++gl++  ++     p++LSgG+ qrvalaral+ kpk++l+DEpt
  CCG93269.1 124 SRAKELLEQVGLSHRSHHY----PHQLSGGEMQRVALARALVMKPKIVLADEPT 173
                 **************55555....5*****************************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   6.6e-05     0.044       6      25 ..      36      55 ..      32      87 .. 0.90
   2 !   10.8   0.1   0.00067      0.44      54     131 ..     123     205 ..     109     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.6e-05
      AAA_22  6 gilvvtGesGtGKTtllrrl 25
                 +++++G+sG+GK+tll  +
  CCG93269.1 36 ESIALVGPSGCGKSTLLHLI 55
                5799************9765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00067
      AAA_22  54 kdllrellralglelkaerlsseell.ealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvGtp 131
                 ++ ++ell+++gl++ +  +  ++l    +++ + ara    +++++ DE    l+   s+++l  Lr+l++  +++++l++v + 
  CCG93269.1 123 SSRAKELLEQVGLSHRS-HHYPHQLSgGEMQRVALARALvmkPKIVLADEPTGnLDseaSQKVLYLLRKLVE--QYQLTLLMVTHS 205
                 5667899******9999.88888888899999999999899999******9887*98767************..*****9887654 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0057       3.8      26      42 ..      37      53 ..      22      57 .. 0.81
   2 !   16.9   0.1   4.8e-06    0.0032     124     211 ..     127     218 ..     104     222 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0057
                EEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlld 42
                  a+vGp G+GKs ll 
  CCG93269.1 37 SIALVGPSGCGKSTLLH 53
                4689*********9986 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 4.8e-06
                 HHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE..EEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf..ivislreemlekadklvgv 211
                 +elle++g+s        +LSgGe + vala  +    +kp  ++l De   +LD +  +kv  ll++  ++ Q+  ++++++ e+ +  d+++++
  CCG93269.1 127 KELLEQVGLSHRshhyphQLSGGEMQRVALARALV---MKP-KIVLADEPTGNLDSEASQKVLYLLRKLVEQYQLtlLMVTHSLEVAKATDRILQM 218
                 5666666666555555559*****98888775543...334.48899*************************996337889999998888888776 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   8.8e-05     0.059       3      22 ..      39      58 ..      37      91 .. 0.84
   2 !   11.5   0.1   0.00029      0.19     235     301 ..     144     208 ..     118     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.8e-05
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                +l+Gp g+GKS+LL ++ ++
  CCG93269.1 39 ALVGPSGCGKSTLLHLIAGI 58
                89************999876 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00029
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSpll 301
                 ++lS G  +  al+ al   +   +++l DEp  +L+ ++  ++l ll k+ ++    ++++THS ++
  CCG93269.1 144 HQLSGGEMQRVALARALVMKP---KIVLADEPTGNLDSEASQKVLYLLrKLVEQYQLTLLMVTHSLEV 208
                 566777555558888888766...9***********************6666669999*******876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.7e-07   0.00011      25     131 ..      36     196 ..      22     217 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.7e-07
      AAA_16  25 elvllsGesGvGKsslvrellralekd........................ggif.lrgkcdqlesaipysalaqalareellrqlldeaesaeleawr 98 
                 e++ l+G+sG+GKs+l+  ++  + +                         g i+ +  ++  l      ++ ++al++   l +ll+  +  e++  +
  CCG93269.1  36 ESIALVGPSGCGKSTLLHLIAG-IDTPtqgeiyvdgypfhllkeeklaklrGSILgIVFQFFNL------LPTLTALDN-VMLPALLQGVSPLEASSRA 126
                 899**************99995.55554654555444444444444443332222233333333......778888866.8888888887777777777 PP

      AAA_16  99 ekleeala.....................................avpelagaeasrllellkrllalls 131
                 ++l+e+++                                     ++++l++++++ +l+ll++l+++++
  CCG93269.1 127 KELLEQVGlshrshhyphqlsggemqrvalaralvmkpkivladePTGNLDSEASQKVLYLLRKLVEQYQ 196
                 7777777788888888888888888888888888888888888888888888888888888888885544 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00019      0.13      32      50 ..      34      52 ..      28      59 .. 0.87
   2 !    6.4   0.0    0.0091       6.1     160     189 ..     175     205 ..     166     209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
      AAA_25 32 agelallaGapgtGKttla 50
                 ge ++l+G++g+GK+tl+
  CCG93269.1 34 PGESIALVGPSGCGKSTLL 52
                4899*************98 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0091
      AAA_25 160 nsnsdv.galvealeriarrtgaavllvhHv 189
                 n +s++ ++++  l+++ ++++ ++l+v H+
  CCG93269.1 175 NLDSEAsQKVLYLLRKLVEQYQLTLLMVTHS 205
                 45566669**********************7 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.4e-06    0.0036      99     125 ..      35      61 ..      13      70 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.4e-06
                  TSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelel 125
                  ++ ++lvG+SG GKStL+  +++ ++ 
   CCG93269.1  35 GESIALVGPSGCGKSTLLHLIAGIDTP 61 
                  57899*************999886554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.8e-06    0.0045      17      39 ..      30      52 ..      24      66 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.8e-06
      AAA_29 17 ieidlkgatlltGpsGsGKSTll 39
                +ei + +++ l+GpsG GKSTll
  CCG93269.1 30 LEIYPGESIALVGPSGCGKSTLL 52
                6777777999************9 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.4e-05     0.016      35      69 ..      25      59 ..      18      82 .. 0.80
   2 ?   -2.0   0.0       4.4   2.9e+03     135     172 ..     166     203 ..     146     214 .. 0.52

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.4e-05
       Rad17 35 lkadvLesrkkriLLisGPsGCgkstvvkvLskel 69
                l+   Le  + + + + GPsGCgkst ++ ++ + 
  CCG93269.1 25 LRKANLEIYPGESIALVGPSGCGKSTLLHLIAGID 59
                55666777777777889***********9988765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.4
       Rad17 135 lilvedlPnkfyrds.dalrevirkylrssealplilvi 172
                 ++l ++   +   ++ +++  ++rk +   + l+l++v 
  CCG93269.1 166 IVLADEPTGNLDSEAsQKVLYLLRKLVEQYQ-LTLLMVT 203
                 4444443322222222444444444444333.3555554 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00015       0.1       1      35 [.      38      67 ..      38      72 .. 0.73
   2 ?   -1.4   0.0       4.7   3.1e+03      49      86 ..     163     201 ..     155     205 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00015
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklkkkdsvy 35
                  i l+Gpsg+GKStl + +a      +++++++++y
    CCG93269.1 38 IALVGPSGCGKSTLLHLIA-----GIDTPTQGEIY 67
                  5689***********9833.....44456666666 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 4.7
  RNA_helicase  49 gqevvvidDfgqvkdee.npsdlaelirlvsstpyplnm 86 
                   ++++v+ d+   + d+e +++ l  l +lv+ ++++l m
    CCG93269.1 163 KPKIVLADEPTGNLDSEaSQKVLYLLRKLVEQYQLTLLM 201
                   567888888888888887777888888888888888877 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00015       0.1       3      21 ..      38      56 ..      36      75 .. 0.88
   2 ?   -0.9   0.0         2   1.4e+03      92     125 ..     171     202 ..     154     218 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00015
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                ++l G++G+GK+tLl+ +a
  CCG93269.1 38 IALVGPSGCGKSTLLHLIA 56
                789************9876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2
                 T-SS-TCH.........HHHHHCTTTTT--EEEE CS
       NACHT  92 elvtdlgqkekqpvrtlLselirkkllpeaslll 125
                 e    l+ +  q+v  lL++l+++   + + l++
  CCG93269.1 171 EPTGNLDSEASQKVLYLLRKLVEQ--YQLTLLMV 202
                 444445556667777788888777..33344444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.6e-05     0.064       2      29 ..      38      65 ..      37      82 .. 0.83
   2 ?   -2.6   0.0       8.6   5.7e+03     131     154 ..     178     201 ..     143     208 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.6e-05
      AAA_28  2 ivitGgestGKTtlleaLaargypvvpE 29
                i+++G++++GK+tll  +a  ++p+  E
  CCG93269.1 38 IALVGPSGCGKSTLLHLIAGIDTPTQGE 65
                89**************999777766655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.6
      AAA_28 131 leereaiderlrealrelgipvii 154
                  e+ +++  +lr+++++++  ++ 
  CCG93269.1 178 SEASQKVLYLLRKLVEQYQLTLLM 201
                 344445555555555555555554 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0013      0.85      46      63 ..      34      51 ..      18      65 .. 0.83
   2 ?    2.9   0.0      0.12        82     105     153 ..     160     210 ..     127     219 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
   IstB_IS21 46 kkenivllGpsGvGKshl 63
                  e+i+l+GpsG GKs l
  CCG93269.1 34 PGESIALVGPSGCGKSTL 51
                5689***********987 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.12
   IstB_IS21 105 rllkvdllilDdlgllpldqaeaellfev...iekryerrsiiitsnlpfae 153
                  ++k+++++ D+  + +ld++++++++ +   + ++y+ + +++t  l++a+
  CCG93269.1 160 LVMKPKIVLADEP-TGNLDSEASQKVLYLlrkLVEQYQLTLLMVTHSLEVAK 210
                 3445566666664.45556555555555501145567777788888887775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00019      0.12       2      20 ..      39      57 ..      38      96 .. 0.87
   2 ?   -0.8   0.0       2.9   1.9e+03      58      72 ..     163     177 ..     122     216 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00019
                EEESSTTSSHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavak 20
                 l+Gp G+GK++l + +a 
  CCG93269.1 39 ALVGPSGCGKSTLLHLIAG 57
                699*************996 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.9
                 TSEEEEEETGGGHHH CS
         AAA  58 kpsilfiDEidalak 72 
                 kp+i++ DE      
  CCG93269.1 163 KPKIVLADEPTGNLD 177
                 466777666433333 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.021        14      37      53 ..      37      53 ..      29      80 .. 0.88
   2 ?    6.6   0.1    0.0071       4.7      88     160 ..     127     202 ..      90     219 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.021
        TniB 37 nlllvGdsnnGKtmive 53
                ++ lvG+s +GK+++++
  CCG93269.1 37 SIALVGPSGCGKSTLLH 53
                789***********986 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0071
        TniB  88 aaiLealgaplkara.....rvskleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                 +++Le++g  +++++     +  ++++ +l+    +k+++++ DE    l   +++ +++l +l++L +++++++ +v
  CCG93269.1 127 KELLEQVGLSHRSHHyphqlSGGEMQRVALARALVMKPKIVLADEPTGNL--DSEASQKVLYLLRKLVEQYQLTLLMV 202
                 56677777666666522211333444555555556899*******99999..55666789************999877 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0022       1.4       2      20 ..      38      56 ..      37      71 .. 0.88
   2 ?    3.0   0.0      0.13        88      57     151 ..     127     222 ..     118     225 .] 0.69

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0022
                EEEE--TTSSHHHHHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvl 20
                +++ Gp+G GK+Tl++ ++
  CCG93269.1 38 IALVGPSGCGKSTLLHLIA 56
                7899************987 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.13
                 EEEEEETT---SSEETTEEE-HHHHHHHHHHHHHHHHHHH-EEEE--.-STTGG.G-HHHHHHHHHHHT.TTSEEEEE--SS--SHHHHHHHT-TT-E CS
    NTPase_1  57 egiLarveakreprvgkyvvdvesfeelalealrkalseadviviDE.iGkmEl.kskkfkeaveevLk.sekpvlavihrrkdlalveeirerkdvk 151
                 ++ L +v+ +++ ++   ++   +++++al+  r  + ++ +++ DE  G++    s+k+   ++++++  +  +l+v h  +  + +++i + kd+ 
  CCG93269.1 127 KELLEQVGLSHRSHHYPHQLSGGEMQRVALA--RALVMKPKIVLADEpTGNLDSeASQKVLYLLRKLVEqYQLTLLMVTHSLEVAKATDRILQMKDGY 222
                 5556666655555555555555555555433..334488999999997799986258999999*****977778888888888888999998888865 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00031      0.21       2      21 ..      38      57 ..      37      78 .. 0.83
   2 ?   -1.3   0.0       3.3   2.2e+03      67      86 ..     188     205 ..     149     221 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00031
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                +a+vG +  GKStL+  + g
  CCG93269.1 38 IALVGPSGCGKSTLLHLIAG 57
                89*************98876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.3
                 HHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  67 gkaflaleeadlillvvdas 86 
                  +++  +e+ +l ll+v  s
  CCG93269.1 188 LRKL--VEQYQLTLLMVTHS 205
                 2222..23345655555544 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0016         1      25      43 ..      37      55 ..      24      71 .. 0.83
   2 ?    2.0   0.0      0.21   1.4e+02     323     368 ..     163     208 ..     153     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0016
      AAA_15 25 ltvliGkNnsGKSsileal 43
                   l+G+ ++GKS++l+++
  CCG93269.1 37 SIALVGPSGCGKSTLLHLI 55
                678*************998 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.21
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitTHSphi 368
                 k++i+l +EP  +L  +a + +  ll++l+++ +  +++ THS  +
  CCG93269.1 163 KPKIVLADEPTGNLDSEASQKVLYLLRKLVEQYQLTLLMVTHSLEV 208
                 5789999**************************9999******765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00083      0.55      21      49 ..      34      62 ..      19      79 .. 0.80
   2 ?    0.2   0.0      0.63   4.2e+02     116     138 ..     178     200 ..     123     218 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00083
  Mg_chelatase 21 GgHnlllvGppGsGKtmlakrlpsllppl 49
                   g ++ lvGp+G+GK+ l + ++++ +p 
    CCG93269.1 34 PGESIALVGPSGCGKSTLLHLIAGIDTPT 62
                  567899************99999886665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.63
  Mg_chelatase 116 pefkrkvlevLRePledgevtis 138
                   +e ++kvl  LR+ +e+ ++t+ 
    CCG93269.1 178 SEASQKVLYLLRKLVEQYQLTLL 200
                   35566666666666666666655 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00015       0.1       1      40 [.      38      77 ..      38     218 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00015
                EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql 40
                ia+vG    GKS++l  + g d    g++ +   p++l +
  CCG93269.1 38 IALVGPSGCGKSTLLHLIAGIDTPTQGEIYVDGYPFHLLK 77
                89********************888888888887777765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00038      0.26       3      20 ..      39      56 ..      37      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00038
                EEE--SSSSHHHHHHHGG CS
       AAA_5  3 lLvGppGtgKselaerla 20
                 LvGp+G+gKs+l   +a
  CCG93269.1 39 ALVGPSGCGKSTLLHLIA 56
                69***********98887 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00054      0.36       3      17 ..      39      53 ..      38      68 .. 0.88
   2 ?   -0.9   0.0       2.5   1.6e+03      40      65 ..     169     194 ..     122     217 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00054
      AAA_33  3 llvGlpGsGKstlae 17
                 lvG++G+GKstl++
  CCG93269.1 39 ALVGPSGCGKSTLLH 53
                68**********987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.5
      AAA_33  40 tdqqsktdytrvldrlyqilnelark 65 
                  d+++ +  +++++++ + l++l+++
  CCG93269.1 169 ADEPTGNLDSEASQKVLYLLRKLVEQ 194
                 34444444445555555555555544 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0     0.002       1.3       2      23 ..      37      58 ..      36      63 .. 0.89
   2 ?    1.3   0.1      0.32   2.1e+02      86     122 ..     176     212 ..     159     219 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.002
                EEEEEESTTSSHHHHHHHHHTT CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltga 23
                ++alvG   +Gk+tl+  ++g 
  CCG93269.1 37 SIALVGPSGCGKSTLLHLIAGI 58
                69**************999986 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.32
                 EEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTT CS
      FeoB_N  86 vdatnlernLyLtlqllelgvpvvlalnmideaekkg 122
                 +d++  ++ LyL+ +l+e  + ++l++  + e+ k+ 
  CCG93269.1 176 LDSEASQKVLYLLRKLVEQYQLTLLMVTHSLEVAKAT 212
                 58999999*********99888887777666665554 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00031      0.21      22      39 ..      38      55 ..      24      58 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00031
      AAA_23 22 tlItGpNGaGKTTildAi 39
                 +++Gp G+GK+T+l  i
  CCG93269.1 38 IALVGPSGCGKSTLLHLI 55
                5799**********9877 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.017        11      22      48 ..      38      65 ..      20      67 .. 0.80
   2 ?    4.0   0.1     0.044        29      48      88 ..     155     196 ..     144     220 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.017
                EEEE--TTSST.THHHHHHHHHHHHTTS CS
        PhoH 22 vfaiGpaGtGK.tylavalavealkkkk 48
                +  +Gp+G+GK t+l + ++++  ++++
  CCG93269.1 38 IALVGPSGCGKsTLLHLIAGIDTPTQGE 65
                5789*******66788888998776665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.044
                 S-SEEEEEE-S-.-TT----SS---------TTTHHHHHHHT CS
        PhoH  48 kvkriiltrpav.eageelGflpgdleekvdpylrplydaLk 88 
                  + r ++++p++  a+e  G l+ + ++kv + lr l+++ +
  CCG93269.1 155 ALARALVMKPKIvLADEPTGNLDSEASQKVLYLLRKLVEQYQ 196
                 33444555555524599**************99999998644 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00025      0.16      25      78 ..      37     102 ..      19     216 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
                 EEEEEESTTSSHHHHHHHHHHHCS--.............--HHHHHCCHHHHHHHHHHHHHHHHHHH CS
     G-alpha  25 kllllGqseSGKsTilkqlkllykkg.............fseeelatwraviqlnivrsiktileal 78 
                 ++ l+G s++GKsT+l  +  + +++              +ee+la++r  i   + + ++ +l +l
  CCG93269.1  37 SIALVGPSGCGKSTLLHLIAGIDTPTqgeiyvdgypfhlLKEEKLAKLRGSILGIVFQFFN-LLPTL 102
                 689*****************99999888999999998877788778888888777777444.33333 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00064      0.42       1      18 [.      38      55 ..      38      85 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00064
      AAA_18  1 IlltGtpGvGKttlakeL 18
                I+l G++G+GK+tl + +
  CCG93269.1 38 IALVGPSGCGKSTLLHLI 55
                89************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 1608.25
//
Query:       CCG93270.1  [L=449]
Description: Stand-alone CHASE2 sensor domain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-23   81.5   0.0    9.7e-23   81.2   0.0    1.1  1  CHASE2    CHASE2 domain


Domain annotation for each model (and alignments):
>> CHASE2  CHASE2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   5.4e-27   9.7e-23      14     248 ..      38     352 ..      15     355 .. 0.75

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 5.4e-27
      CHASE2  14 llqlelklyDlllrlrge..pe..iviVaIDeeslaegrwpwsravlarllerLeaagakaiglDilfse..peey..dealaealakgpnvv...... 98 
                 ++ +e+k++ l +++ ++  ++   v+V+ID   ++++ wpw+r  +  +l+ L  + ++ ++lDilf++  p+ +  de +   + + ++v       
  CCG93270.1  38 FNAIEEKVVHL-QEYLPTpaKDtqFVLVEIDRIPVDRP-WPWPRLEYSLFLRSLIPQMPQSVVLDILFTDrgPRLDsfDETFRSLINRLNRVCfagaal 134
                 33488887775.444444452256********999876.***************************999976444488999999999977673444445 PP

      CHASE2  99 ................................paa......aglGfvnvvpDaDgvvRr.pllvese..lipslalalalrylkae............. 143
                                                 p        + +G +n+   + + +R  pl+++ +  l+psl l +a+ y++a+             
  CCG93270.1 135 kteslapqqflfekfmvrgdpsflpkygsafwP-StdltegNPVGINNLGVGTNRKIRAvPLFFQLKdsLVPSLTLVAAASYMQASignsearlnkafl 232
                 555555555555555556555555444433331.145556699******8899**********77777*99***********96334677899999999 PP

      CHASE2 144 ......kl..rlpvdesgglllnyrgg.sktfptvsladvle........vpp....eefkdkiVliGatatglkdlfstPfssempgveihAnalsnl 221
                       ++  r+p+d +g++ l+++ + ++ + ++ + d l         ++p      +++k V +G+t + + +   t ++ +m+ vei   a+ ++
  CCG93270.1 233 lrnstgNIlrRIPLDSEGRMQLRFK-RfPSGIIRIKYDDFLLyadqmargIKPafdlNLLHGKQVWLGVTDPAVINWIETDMG-KMSPVEIKLEAARQI 329
                 9987663367************995.4443345577777764456666887775543477**********************8.*************** PP

      CHASE2 222 lsalkpgefllevppewaellwlllll 248
                 +    +g+fl+++p+++a ++++l+ +
  CCG93270.1 330 V----QGDFLRRTPKGVAFVFLFLFSV 352
                 *....9*******99999888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3214.98
//
Query:       CCG93271.1  [L=314]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0002   21.4   2.3    0.00026   21.1   0.2    2.3  2  DnaJ          DnaJ domain
  ------ inclusion threshold ------
       0.17   12.2   0.2       0.17   12.2   0.2    2.8  4  Zein-binding  Zein-binding
       0.23   11.4   1.2        7.7    6.5   0.1    2.5  2  SFTA2         Surfactant-associated protein 2


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2   4.3e-08   0.00026      12      51 ..     155     195 ..     147     196 .. 0.81
   2 ?   -2.0   0.1       0.7   4.2e+03      14      28 ..     252     266 ..     249     283 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 4.3e-08
                 G-HHHHHHHHHHHHHHHSTTTS.CCHHHHHHHHHHHHHHHH CS
        DnaJ  12 asedeIkkaYrklalkyHPDkn.pkdpeaeekFkeineAye 51 
                   e++Ik+a+r++a+ +HPD n + +pe+ e+    + Ay+
  CCG93271.1 155 PRESKIKAAFRTIARLLHPDANnSVSPEKMERWYAAQMAYK 195
                 56889***************762555699999988888886 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.7
                 HHHHHHHHHHHHHHH CS
        DnaJ  14 edeIkkaYrklalky 28 
                 + +I ++Y ++++ +
  CCG93271.1 252 QCQIDRQYVRKIKIW 266
                 567888888887766 PP

>> Zein-binding  Zein-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.55   3.3e+03      56      78 ..      33      55 ..      16      63 .. 0.64
   2 ?   12.2   0.2   2.8e-05      0.17      32      88 ..     160     216 ..     149     220 .. 0.90
   3 ?   -3.5   0.1       2.3   1.4e+04      73      84 ..     227     238 ..     222     241 .. 0.50
   4 ?   -0.9   0.1      0.35   2.1e+03      57      77 ..     264     284 ..     256     294 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.55
  Zein-binding 56 ykrmaeekaeydeeelealeell 78
                   ++  + +  y ++ele+++  l
    CCG93271.1 33 IRQNWQIRYLYLQKELENVQSKL 55
                  55555555566666666665554 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.8e-05
  Zein-binding  32 adeamamIlrLqeEKaavemearqykrmaeekaeydeeelealeelllkrekeikel 88 
                    + a   I rL +  a+  +  ++++r    +++y+++ le le l + +ek+ ++l
    CCG93271.1 160 IKAAFRTIARLLHPDANNSVSPEKMERWYAAQMAYKAKDLELLESLCYLEEKQTEAL 216
                   567889999*******************************************99987 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.3
  Zein-binding  73 aleelllkreke 84 
                   +l ++l+k+ ke
    CCG93271.1 227 VLDKTLQKKKKE 238
                   455555555544 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.35
  Zein-binding  57 krmaeekaeydeeelealeel 77 
                   k  ++ek++ +++el++l++ 
    CCG93271.1 264 KIWINEKIKEKKKELNKLNDK 284
                   445677777777777777765 PP

>> SFTA2  Surfactant-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.2     0.015        89      13      31 ..     101     119 ..      93     124 .. 0.90
   2 ?    6.5   0.1    0.0013       7.7      14      35 ..     187     208 ..     182     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.015
       SFTA2  13 esflansSydssflelLeK 31 
                 +s+l n S++ s+  lL+K
  CCG93271.1 101 DSLLHNRSVAISYHFLLQK 119
                 89***************99 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0013
       SFTA2  14 sflansSydssflelLeKlCll 35 
                  + a++ y+++ lelLe lC+l
  CCG93271.1 187 WYAAQMAYKAKDLELLESLCYL 208
                 5778999*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1742  (0.097161); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1993.71
//
Query:       CCG93272.1  [L=244]
Description: Biopolymer transport protein (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-28   99.2   0.8    1.9e-28   98.7   0.8    1.2  1  MotA_ExbB  MotA/TolQ/ExbB proton channel family
  ------ inclusion threshold ------
       0.21   11.5   0.0       0.39   10.6   0.0    1.3  1  CxC3       CxC3 like cysteine cluster associated with KDZ tra


Domain annotation for each model (and alignments):
>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.8   2.1e-32   1.9e-28      19     126 ..     117     224 ..      98     225 .. 0.92

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 2.1e-32
                 -HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSGGCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB  19 vdgaepeelrraleealsreeerlekglsilatigslaPllGLlGTVlGlieafqaladagsadlakvapgiaeALiaTalGlvvAipavlaynklkrk 117
                 + +++ + ++ a+e+++ +++ +le ++ +lat++s aP++GLlGTV+G++ af +la +g+a+la++apg++  L++T++Gl+vAipa++ yn++ ++
  CCG93272.1 117 IPEKSLKLIQGAIEREIGNQLLQLEDQMILLATAASGAPFIGLLGTVWGVMDAFGDLALSGKATLATMAPGVSGSLLSTVMGLLVAIPALFGYNFIVAT 215
                 667889999****************************************************************************************** PP

                 HHHHHHHHX CS
   MotA_ExbB 118 verlvlele 126
                 +++l+ +le
  CCG93272.1 216 IKALTIDLE 224
                 **9998887 PP

>> CxC3  CxC3 like cysteine cluster associated with KDZ transposases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.4e-05      0.39      65     104 ..      74     114 ..      68     117 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.4e-05
        CxC3  65 sGfwpgspdessylf.seelLllwyhlkhktpgtSerkfie 104
                    +pgsp +++y+  ++el+ l++ l+  + g Se+  ++
  CCG93272.1  74 KEIYPGSPHHAIYMTgCKELFNLYHGLSDPMEGYSEKSLLK 114
                 5678********6654********************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1795.79
//
Query:       CCG93273.1  [L=142]
Description: Biopolymer transport protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-24   87.0   0.1    1.5e-24   86.6   0.1    1.0  1  ExbD      Biopolymer transport protein ExbD/TolR


Domain annotation for each model (and alignments):
>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.1   8.2e-29   1.5e-24       6     126 ..      14     132 ..      12     135 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 8.2e-29
        ExbD   6 aeinltpmiDvvflLLifFlvtaklkkpeplevdlPsssstqkeveekelirisisadgsiyldkkavsveelaqklkerkakppdkltvaikadkdvs 104
                 +e+n+tpm+D +f L+i+Fl+t++l +++ l+++lPs +s+++ +  ++++ + i+++g+i +d  +v+ ++l++ l er +k+p+  tv++k+dkd +
  CCG93273.1  14 SELNVTPMLDFAFTLMIIFLITTPLLEQN-LDISLPSLNSKKEPTFSRNPLVLEIHKNGKIVCDNIPVDKHNLEKILLERLQKDPEL-TVSLKMDKDLK 110
                 59***************************.************99******************************************9.*********** PP

        ExbD 105 ygklvevldtlkkagiekvslv 126
                 y++++  ++ l kagi++++lv
  CCG93273.1 111 YEEFLPFVEILEKAGIKRIGLV 132
                 ********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1197.40
//
Query:       CCG93274.1  [L=265]
Description: putative Periplasmic protein TonB [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-13   49.1   0.1    2.4e-12   46.9   0.0    2.0  2  TonB_2    TonB C terminal
    2.8e-07   30.9   0.0    6.4e-07   29.7   0.0    1.6  1  TonB_C    Gram-negative bacterial TonB protein C-terminal
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.19   11.8   0.0    1.3  1  DUF5346   Family of unknown function (DUF5346)


Domain annotation for each model (and alignments):
>> TonB_2  TonB C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.31   1.9e+03      60      75 ..     119     133 ..     110     142 .. 0.77
   2 !   46.9   0.0   3.9e-16   2.4e-12       1      85 []     177     261 ..     177     262 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.31
      TonB_2  60 rAiekasplPpppekg 75 
                 + ++++++lP+p  ++
  CCG93274.1 119 KELKRSDSLPQPK-HT 133
                 558899****997.44 PP

  == domain 2  score: 46.9 bits;  conditional E-value: 3.9e-16
      TonB_2   1 sdeYaakvrarikenwafpsq.isgnleavveitidpdGeivsvrlvksSgneafDkavkrAiekasplPpppekggapteikftF 85 
                 ++ Y+  +r++++  w +p +    +l+a++e+t++ +G++ +++l +sSgne+fD+++++Ai+k +++++p   +  p+ i+++F
  CCG93274.1 177 YERYYLLIREKLYSLWDQPVElLGLGLSATIEMTVESNGKVRQFKLLQSSGNEKFDQSALEAIKKLESIGEPR-PSTIPEVITVKF 261
                 578999**********9996679*****************99***************************9996.666666666665 PP

>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.1e-10   6.4e-07      17      56 ..     204     243 ..     199     263 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.1e-10
                 EEEEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT-E CS
      TonB_C  17 tvtveftidpdGnvtnvkvvkssgseiLdkaAleavrkwk 56 
                 ++t+e+t+ ++G+v + k+++ssg e +d++Alea++k  
  CCG93274.1 204 SATIEMTVESNGKVRQFKLLQSSGNEKFDQSALEAIKKLE 243
                 5799*********************************943 PP

>> DUF5346  Family of unknown function (DUF5346)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.2e-05      0.19      44      96 ..      27      79 ..      21      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.2e-05
     DUF5346 44 svdvgpyfccpiwstygaayrpaapfynyvpalpanwpdvvkltanwpasavs 96
                s+ +   fc  +  ++  + +p++ +++++p+ p+  p+ vkl+a+ ++ +++
  CCG93274.1 27 SLHLAIIFCFFLIHSFNKPAQPKTSYFQFMPSSPSHEPSNVKLHADNTSKEMT 79
                667777899999999****************************9987766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1496  (0.0834402); expected 358.6 (0.02)
Passed bias filter:                      710  (0.0396006); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 2187.62
//
Query:       CCG93275.1  [L=75]
Description: hypothetical protein MFUM_970045 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      685  (0.0382063); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 675.42
//
Query:       CCG93276.1  [L=381]
Description: Periplasmic component of the Tol biopolymer transport system [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-30  102.1  12.4    4.8e-08   32.7   0.1    5.7  6  PD40             WD40-like Beta Propeller Repeat
    6.2e-11   41.7   0.0    0.00039   19.3   0.0    3.6  3  DPPIV_N          Dipeptidyl peptidase IV (DPP IV) N-terminal 
    4.1e-08   32.3   0.1       0.46    9.1   0.0    4.5  5  Pectate_lyase22  Oligogalacturonate lyase
     0.0022   16.8   0.0       0.33    9.7   0.0    2.7  3  Peptidase_S9_N   Prolyl oligopeptidase, N-terminal beta-prope
     0.0024   17.7   0.0       0.21   11.3   0.0    2.9  4  Gmad1            Lipoprotein LpqB beta-propeller domain


Domain annotation for each model (and alignments):
>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.7     6e+03      22      36 ..     127     140 ..     127     141 .. 0.63
   2 !   26.4   0.1   1.3e-09   4.6e-06       4      37 ..     153     185 ..     150     186 .. 0.84
   3 !   17.4   0.0   8.6e-07    0.0031       7      38 .]     200     230 ..     195     230 .. 0.94
   4 !   32.7   0.1   1.4e-11   4.8e-08       2      38 .]     239     274 ..     238     274 .. 0.95
   5 !   20.2   0.2   1.2e-07   0.00042       2      36 ..     283     316 ..     282     320 .. 0.89
   6 !    9.7   0.0   0.00023      0.81       4      27 ..     328     350 ..     326     355 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.7
                 EEEEEEECT.TCEEE CS
        PD40  22 rlaFsSdRgsGkpdI 36 
                 ++aF S+ + G  ++
  CCG93276.1 127 KIAFISSDT-GFKEL 140
                 578888756.65555 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 1.3e-09
                 --SSSS.EEEEEE-TTSSEEEEEEECT.TCEEEE CS
        PD40   4 ltntpgnegaPsfSPDGkrlaFsSdRgsGkpdIy 37 
                 lt+   +   P++S D +++a++S+++ G+pd+y
  CCG93276.1 153 LTSDKTISAHPRWSHDRTMIAYTSYKS-GYPDVY 185
                 5555557788****************9.****99 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 8.6e-07
                 SSS.EEEEEE-TTSSEEEEEEECT.TCEEEEE CS
        PD40   7 tpgnegaPsfSPDGkrlaFsSdRgsGkpdIyv 38 
                 +pg + + sfSPD k la + +++ G+p+Iy+
  CCG93276.1 200 FPGVNSGASFSPDDKNLALTLSKD-GNPEIYI 230
                 7999********************.******7 PP

  == domain 4  score: 32.7 bits;  conditional E-value: 1.4e-11
                 EE--SSSS.EEEEEE-TTSSEEEEEEECT.TCEEEEE CS
        PD40   2 krltntpgnegaPsfSPDGkrlaFsSdRgsGkpdIyv 38 
                 ++lt + + +++P +SPDG+ ++++Sd   G+ ++++
  CCG93276.1 239 RQLTRNRATNTSPCWSPDGSQIVYTSDER-GSIQLFI 274
                 899************************99.****996 PP

  == domain 5  score: 20.2 bits;  conditional E-value: 1.2e-07
                 EE--SSSS.EEEEEE-TTSSEEEEEEECT.TCEEE CS
        PD40   2 krltntpgnegaPsfSPDGkrlaFsSdRgsGkpdI 36 
                 krl++++ +  +P +S DGk++aFs + g G ++I
  CCG93276.1 283 KRLITGNTYSSEPDWSRDGKKIAFSARIG-GLFQI 316
                 899**********************9988.76665 PP

  == domain 6  score: 9.7 bits;  conditional E-value: 0.00023
                 --SSSS.EEEEEE-TTSSEEEEEE CS
        PD40   4 ltntpgnegaPsfSPDGkrlaFsS 27 
                 +++t+g  ++Ps++P+ + l++ S
  CCG93276.1 328 ILTTQG-GEDPSWTPNSRHLVYES 350
                 567778.89*************98 PP

>> DPPIV_N  Dipeptidyl peptidase IV (DPP IV) N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.1e-07   0.00039     247     353 ..     125     226 ..      87     227 .. 0.84
   2 !   11.6   0.0   2.4e-05     0.087      24      63 ..     227     266 ..     221     308 .. 0.78
   3 !    7.2   0.0   0.00051       1.8      24      78 ..     315     367 ..     298     369 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.1e-07
                 SSEEEEEEETTSSEEEEEEESSS-C.EEESS-SSS-EEEEEEEETTTTEEEEEESSSETTEBEEEEEESSCTTEEEESSTTTSEEEEEEE-TTSSEEEE CS
     DPPIV_N 247 esgflwisekdGfkHLylfdldgkseikqlTsGeweVtsilavdekrdlvyFtatkdsPlerhlYsvslesggeltrltdeegdhysasfspsgkyyvl 345
                 + ++ +is+ +Gfk Lyl+d+dg+   + lTs +       +++ +r  + +t++k  +++  +Y ++l+ + + +r     g +  asfsp+ k + l
  CCG93276.1 125 NCKIAFISSDTGFKELYLMDMDGAG-LQRLTSDKTIS-AHPRWSHDRTMIAYTSYK--SGYPDVYLIKLS-KHSRVRFAFFPGVNSGASFSPDDKNLAL 218
                 567899*******************.******99765.78899*************..78**********.5555555444444459********9999 PP

                 EEESSSSS CS
     DPPIV_N 346 kysgpdtp 353
                 + s+ ++p
  CCG93276.1 219 TLSKDGNP 226
                 99987776 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.4e-05
                 EEEEEETTTEECEEEETTTT.BSEEEEESSTTEEEEEETT CS
     DPPIV_N  24 eyyiydletneveelspgeeklqlakwSPagdklafvrnn 63 
                 e yi  +e ++ ++l++++++ + + wSP+g +++++ + 
  CCG93276.1 227 EIYIMSIEGGTPRQLTRNRATNTSPCWSPDGSQIVYTSDE 266
                 6788899999999999999999999999999999999875 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.00051
                 EEEEEETTTEECEEEETTTT.BSEEEEESSTTEEEEEETTEEEEESTTTSEEEEC CS
     DPPIV_N  24 eyyiydletneveelspgeeklqlakwSPagdklafvrnnnLyvrelatgkeiql 78 
                 +  +ydl+++e++ l+ +    +++ w P+++ l++     Ly+ ++ ++++i++
  CCG93276.1 315 QIGVYDLNKQEASILTTQ--GGEDPSWTPNSRHLVYESHGSLYLLDTVSRQTIKI 367
                 56689****999999988..899**********************9999998876 PP

>> Pectate_lyase22  Oligogalacturonate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.72   2.6e+03      72     110 ..      21      61 ..      10      70 .. 0.73
   2 !    4.7   0.0    0.0027       9.7     344     383 ..     152     190 ..     133     193 .. 0.75
   3 !    7.0   0.0   0.00056         2     356     382 ..     207     233 ..     203     237 .. 0.91
   4 !    6.0   0.0    0.0011       3.9     241     268 ..     249     276 ..     239     285 .. 0.68
   5 !    9.1   0.0   0.00013      0.46      27      81 ..     281     335 ..     278     370 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.72
  Pectate_lyase22  72 avqltegkgdntfggflssdddalfyv..knernlmrvdle 110
                       v++t gk   ++g f+  + +a   +  k+ ++ m +d++
       CCG93276.1  21 QVEVTGGKVKLSLGSFVGKEAEACQRIisKDLLQTMLIDVS 61 
                      46788999999999999999988754422777777777765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0027
  Pectate_lyase22 344 vlegdrqvthphpsftpddkqvlftsdvegkpalylakvp 383
                       l  d+ ++  hp ++ d   + +ts  +g p +yl+k+ 
       CCG93276.1 152 RLTSDKTIS-AHPRWSHDRTMIAYTSYKSGYPDVYLIKLS 190
                      455566554.688888888888899999999999988875 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.00056
  Pectate_lyase22 356 psftpddkqvlftsdvegkpalylakv 382
                       sf+pddk++ +t   +g+p +y++++
       CCG93276.1 207 ASFSPDDKNLALTLSKDGNPEIYIMSI 233
                      69**********************876 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0011
  Pectate_lyase22 241 thevwvpdgsalayvsylkgsterviys 268
                      t   w pdgs ++y s  +gs + +i+ 
       CCG93276.1 249 TSPCWSPDGSQIVYTSDERGSIQLFIIP 276
                      4556777777777777777777777665 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.00013
  Pectate_lyase22  27 tppdvichrnyfyqkcftrdgskllfggafdgprnyylldlntqqavqltegkgd 81 
                      tp  +i    y  +  ++rdg+k+ f+  + g ++  + dln q+a  lt   g+
       CCG93276.1 281 TPKRLITGNTYSSEPDWSRDGKKIAFSARIGGLFQIGVYDLNKQEASILTTQGGE 335
                      67778888888888999******************************99876665 PP

>> Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.16   5.8e+02     174     190 ..     162     178 ..     129     197 .. 0.68
   2 !    9.7   0.0   9.2e-05      0.33     129     189 ..     207     265 ..     202     272 .. 0.88
   3 !    3.6   0.0    0.0067        24     131     188 ..     297     350 ..     276     354 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.16
                     EEEECTTSSEEEEEESS CS
  Peptidase_S9_N 174 givWaadekgffYtryd 190
                        W +d + + Yt+y+
      CCG93276.1 162 HPRWSHDRTMIAYTSYK 178
                     36799998888899987 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 9.2e-05
                     EEE-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEES CS
  Peptidase_S9_N 129 favsedgkllAyslsksGsdwytirvkdietgedlpdeledvkfsgivWaadekgffYtry 189
                      ++s+d k lA  lsk G+   +i ++ ie g + + + ++++ ++  W +d++ + Yt+ 
      CCG93276.1 207 ASFSPDDKNLALTLSKDGN--PEIYIMSIEGGTPRQLTRNRATNTSPCWSPDGSQIVYTSD 265
                     56****************9..58**********9888888898899************984 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.0067
                     E-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEE CS
  Peptidase_S9_N 131 vsedgkllAyslsksGsdwytirvkdietgedlpdeledvkfsgivWaadekgffYtr 188
                      s+dgk +A+s   +G    +i v+d++++e  +  l+   ++  +W+++++ + Y +
      CCG93276.1 297 WSRDGKKIAFSARIGG--LFQIGVYDLNKQE--ASILTTQGGEDPSWTPNSRHLVYES 350
                     699*********9999..578999**99999..77777777888**********9986 PP

>> Gmad1  Lipoprotein LpqB beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.18   6.5e+02      36      75 ..     127     168 ..     124     175 .. 0.77
   2 !   10.0   0.0   0.00014      0.51      28      77 ..     207     258 ..     202     270 .. 0.79
   3 !   11.3   0.0   5.7e-05      0.21      22      76 ..     245     301 ..     237     311 .. 0.86
   4 ?    1.3   0.0     0.068   2.4e+02      27      75 ..     294     342 ..     281     347 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.18
       Gmad1  36 qvaavtapdggrtLvvgsyggeasevl.eggslt.rpSwdrd 75 
                 ++a++++++g ++L+ ++++g+  + l ++++++ +p w+ d
  CCG93276.1 127 KIAFISSDTGFKELYLMDMDGAGLQRLtSDKTISaHPRWSHD 168
                 6899999**********9998887777566666426777765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00014
       Gmad1  28 aAvSrdgqqvaavtapdggrtLvvgs.yggeasevl.eggsltrpSwdrdga 77 
                 a+ S+d++++a   ++dg+ +++++s +gg +++++ ++ + t+p w++dg+
  CCG93276.1 207 ASFSPDDKNLALTLSKDGNPEIYIMSiEGGTPRQLTrNRATNTSPCWSPDGS 258
                 678*********************962566677777555599******9964 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 5.7e-05
       Gmad1  22 avdlrsaAvSrdgqqvaavtapdggrtLvvg.syggeasevleggslt.rpSwdrdg 76 
                 +++ +s+  S+dg+q++  ++++g+ +L ++ s+gg ++ +++g++++ +p w+rdg
  CCG93276.1 245 RATNTSPCWSPDGSQIVYTSDERGSIQLFIIpSEGGTPKRLITGNTYSsEPDWSRDG 301
                 55678999************9********9978999999999999885379999996 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.068
       Gmad1  27 saAvSrdgqqvaavtapdggrtLvvgsyggeasevleggsltrpSwdrd 75 
                 ++  Srdg+++a+ ++  g  ++ v + +++ +++l+ +   +pSw+++
  CCG93276.1 294 EPDWSRDGKKIAFSARIGGLFQIGVYDLNKQEASILTTQGGEDPSWTPN 342
                 55679**********999999999999999999999999999****988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2564.41
//
Query:       CCG93277.1  [L=179]
Description: Outer membrane protein or related peptidoglycan-associated (Lipo)protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-22   79.3   0.0    2.8e-22   78.9   0.0    1.1  1  OmpA      OmpA family


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   1.6e-26   2.8e-22       1      95 []      75     170 ..      75     170 .. 0.99

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 1.6e-26
                 .B-TTS--B-GGGHHHHHHHHHHHH.S-S--EEEEE---S---HHHHHHHHHHHHHHHHHHHHHTTSSGGGEEEEE-TT--------------EE. CS
        OmpA   1 yFapgsseLtpkaksaldkiaellk.kpeqkitveGhtdaagseernweLSqkRAeaVanylqnegvppsrisvsgyGaerpitanntaekkarnr 95 
                 yFa++ss + ++++ +++kia++++ +p ++i + Gh+d++g+ee+n  L ++RA+aV++yl+  gv p+ri++ +yG+ rp++ + t+++ a+nr
  CCG93277.1  75 YFAFDSSAIPATERGKIEKIAQWMNeHPGDSILLAGHCDERGTEEYNRGLGERRAIAVREYLVGLGVAPERIHTISYGKDRPAAIGHTEADYAKNR 170
                 8************************9999****************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1196.71
//
Query:       CCG93278.1  [L=456]
Description: ATPase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-62  208.6   0.0    8.5e-62  208.0   0.0    1.3  1  MgsA_C           MgsA AAA+ ATPase C terminal
    4.4e-24   84.6   0.1    1.6e-23   82.9   0.0    2.0  1  AAA_assoc_2      AAA C-terminal domain
    7.8e-18   65.2   0.2    3.5e-15   56.6   0.0    2.5  2  AAA              ATPase family associated with various cellul
    1.3e-14   54.3   0.0    3.5e-14   52.9   0.0    1.7  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    3.7e-08   33.4   0.1    1.3e-07   31.7   0.1    1.8  1  AAA_5            AAA domain (dynein-related subfamily)
    2.8e-07   30.4   0.0     0.0017   18.1   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
    1.3e-06   29.0   0.0    2.5e-06   28.0   0.0    1.5  1  AAA_18           AAA domain
    3.5e-06   27.5   1.6      0.013   15.9   0.0    3.1  3  AAA_16           AAA ATPase domain
    6.4e-06   25.7   0.0      0.064   12.6   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    2.2e-05   24.6   0.0    5.2e-05   23.4   0.0    1.6  1  Sigma54_activ_2  Sigma-54 interaction domain
    2.8e-05   24.4   1.5     0.0066   16.7   0.1    3.0  3  AAA_22           AAA domain
      4e-05   23.7   0.0      9e-05   22.5   0.0    1.6  1  AAA_14           AAA domain
     0.0002   21.2   0.0    0.00039   20.2   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
    0.00045   20.4   0.0    0.00078   19.6   0.0    1.4  1  AAA_33           AAA domain
    0.00058   20.0   0.0     0.0012   18.9   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
      0.001   18.3   0.0     0.0017   17.6   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
     0.0012   18.2   0.0      0.018   14.3   0.0    2.2  3  TIP49            TIP49 P-loop domain
     0.0023   17.8   0.0     0.0043   16.9   0.0    1.4  1  AAA_3            ATPase family associated with various cellul
     0.0039   17.6   0.0     0.0074   16.7   0.0    1.5  1  RNA_helicase     RNA helicase
     0.0041   16.9   0.0     0.0092   15.7   0.0    1.7  1  AAA_24           AAA domain
     0.0057   17.0   0.4       0.46   10.8   0.1    2.3  2  AAA_19           AAA domain
      0.006   16.8   0.0      0.012   15.9   0.0    1.5  1  AAA_28           AAA domain
     0.0091   15.7   0.2       0.29   10.8   0.2    2.3  1  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.011   15.0   0.0      0.017   14.3   0.0    1.3  1  NB-ARC           NB-ARC domain
      0.013   16.0   0.0      0.027   15.0   0.0    1.7  1  ABC_tran         ABC transporter
      0.026   13.9   0.0       0.35   10.3   0.0    2.2  2  TniB             Bacterial TniB protein
      0.027   14.1   0.0      0.073   12.6   0.0    1.7  1  AAA_25           AAA domain
      0.049   12.9   0.0      0.096   12.0   0.0    1.4  1  Zeta_toxin       Zeta toxin
      0.055   13.4   0.4       0.32   10.9   0.0    2.3  2  NACHT            NACHT domain
      0.067   13.6   0.4       0.31   11.5   0.2    2.3  2  AAA_17           AAA domain
      0.071   13.1   0.3        5.6    6.9   0.0    2.3  2  ResIII           Type III restriction enzyme, res subunit
      0.079   12.0   0.0       0.13   11.3   0.0    1.2  1  T2SSE            Type II/IV secretion system protein
      0.089   12.7   0.2       0.89    9.4   0.2    2.6  1  ATPase_2         ATPase domain predominantly from Archaea
      0.098   12.6   0.3       0.29   11.1   0.2    1.8  1  NTPase_1         NTPase
       0.11   11.6   0.0       0.21   10.7   0.0    1.5  1  Parvo_NS1        Parvovirus non-structural protein NS1
       0.16   11.6   0.0       0.26   11.0   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase


Domain annotation for each model (and alignments):
>> MgsA_C  MgsA AAA+ ATPase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.0   0.0   1.7e-64   8.5e-62       1     166 [.     275     437 ..     275     438 .. 0.98

  Alignments for each domain:
  == domain 1  score: 208.0 bits;  conditional E-value: 1.7e-64
                 TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHHHHCS----GG.GHHHHHHHHH------ CS
      MgsA_C   1 GSdpdAAlyylarmleaGedprfiaRRlviiAseDiGlAdpqalqlavaaaeaveriGlpEariaLaqavvylalapKSnaaykAikkaledvkekksl 99 
                 GSdpd+A+y+la+ml+aGedprfiaRRlvi+++eDiGlAdp+ l++a+ a++a+e+iG+pE+ri+La a++yl+l+pKSn+ay+Ai+ka+e v++k++ 
  CCG93278.1 275 GSDPDSAIYWLAKMLAAGEDPRFIARRLVILSTEDIGLADPNGLTVAMGAFDAIEKIGMPEGRIPLAFATIYLCLSPKSNSAYNAINKAMEWVEKKETV 373
                 9************************************************************************************************** PP

                 ---GGGST...........T-T---GGG--SS------S-CCG--..--------HHHHHHH-XXX. CS
      MgsA_C 100 evPlhLrnaptklakklgygkgYkyphdypegvvkqqylpdelkkkkfYepterglekkikerlekl 166
                 evP+ L++++++ a+k+g+g gY y+hd++e+++ q+y  +     +fY+pt++g+ek+++erl+++
  CCG93278.1 374 EVPQFLKDTHYSWATKMGRGIGYLYSHDFREAISPQRYGMK---PGTFYSPTDHGKEKEFSERLKYI 437
                 **************************************754...557*****************987 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   3.1e-26   1.6e-23       2      81 .]     194     274 ..     193     274 .. 0.91

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 3.1e-26
                  XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHH CS
  AAA_assoc_2   2 ekklkleddalealaeladGDaRkaLnlLElaaeaaeak.egkieitledleealqrkalryDkagdehYdliSAlhKSiR 81 
                  +++ k+++ a e+l+++++GDaR++Ln++E+a+ ++ ++ +++  i  + +e+++q+k+ ryD+ +dehYd+iSA++KS+R
   CCG93278.1 194 NYEAKIDKAAQELLLDICEGDARRLLNYIEVAVLSSFQEnKQPLIIGIDVIENLIQKKTPRYDHGEDEHYDTISAFIKSVR 274
                  57889*************************777766554388888***********************************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   7.1e-18   3.5e-15       1     123 [.      59     163 ..      59     172 .. 0.82
   2 ?    6.2   0.0     0.027        13      51     100 ..     228     298 ..     196     331 .. 0.70

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 7.1e-18
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 ++l+GppGtGKT+la+ +ak++++ f ++++ e     v +  k +++  ++ ke+++ + lfiDEi++++ks+           +++Ll+ l+  +  
  CCG93278.1  59 IILFGPPGTGKTTLAEIIAKKTKSFFERLNAVEAG---VADLRKILNKASTRWKEQKRGTLLFIDEIHRFNKSQ-----------QDVLLPDLETGTI- 142
                 689******************************99...677777777777777777745***************...........********99988. PP

                 SSTEEEEEEESS..GGGSTHHHHSTT CS
         AAA 100 eskvivigatnr..pdkldpallrgR 123
                      +igat++     l+ +ll +R
  CCG93278.1 143 ----KLIGATTHnpSFYLTAPLL-SR 163
                 ....4889888855555666666.55 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.027
                 HHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHTTTS..................S CS
         AAA  51 keakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkk..................e 100
                 ++ +e+++p i+ iD i++l++++    ++ ++e+ ++++++++ + g + +                   
  CCG93278.1 228 SSFQENKQPLIIGIDVIENLIQKKtprYDHGEDEHYDTISAFIKSVRGSDPDsaiywlakmlaagedprfI 298
                 333444479***************88777777778888888887777776655555555555555555553 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0     7e-17   3.5e-14       1     116 [.      26     145 ..      26     162 .. 0.76

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 7e-17
      RuvB_N   1 lrPksleeyigqekvk...eklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaalltn.......leekdvlf 89 
                 +rP+slee +gqe++    + l+ +i+a +     +  ++l+GpPG Gkttla+iiak+ ++ ++   + v    +dl  +l++        +++ +lf
  CCG93278.1  26 MRPRSLEELVGQEEILlpgKPLRRLIDADR-----IQSIILFGPPGTGKTTLAEIIAKKTKSFFERLNA-VEAGVADLRKILNKastrwkeQKRGTLLF 118
                 79************9633367888888765.....6679*******************99987765543.23344566666554111111145678*** PP

      RuvB_N  90 ideihrlsraveevlysamedfrldiv 116
                 ideihr++++ ++vl + +e  ++ ++
  CCG93278.1 119 IDEIHRFNKSQQDVLLPDLETGTIKLI 145
                 ********************9988875 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   2.5e-10   1.3e-07       2      96 ..      59     144 ..      58     152 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 2.5e-10
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE. CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlll 96 
                 ++L GppGtgK++lae +a+ + +++++ ++      +dl+  ++  +  t++      ++ ++g +l++DE++r +++ +++Ll+ le+ ++ l
  CCG93278.1  59 IILFGPPGTGKTTLAEIIAKKT-KSFFERLNAVEAGVADLRKILN--KASTRW------KEQKRGTLLFIDEIHRFNKSQQDVLLPDLETGTIKL 144
                 79******************97.578889999999**********..444444......455799*********************999988776 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0011      0.53      23      56 ..      57      90 ..      40     105 .. 0.76
   2 !   18.1   0.0   3.3e-06    0.0017      90     130 ..     110     150 ..     102     155 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0011
                     S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEE CS
  Sigma54_activat 23 lsvlitGesGtGKellaraiheaskrkekpfvav 56
                      s+++ G  GtGK++la+ i +++k   +++ av
       CCG93278.1 57 QSIILFGPPGTGKTTLAEIIAKKTKSFFERLNAV 90
                     68999***************99877655555444 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 3.3e-06
                      HHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSE CS
  Sigma54_activat  90 ekadgGtlfLDeigelplelQekLlrvlqegevervGsske 130
                      e+  g  lf+Dei++++ + Q  Ll  l++g+++ +G++++
       CCG93278.1 110 EQKRGTLLFIDEIHRFNKSQQDVLLPDLETGTIKLIGATTH 150
                      55667889*****************************9876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   5.1e-09   2.5e-06       1      61 [.      59     134 ..      59     143 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 5.1e-09
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf..........gvnlrdvakenglllevdpe....aldeskrldedkldkll 61 
                 I+l G+pG+GKttla+ ++k++  f          +  lr+++ +  +++ +++      +de +r+++ ++d+ll
  CCG93278.1  59 IILFGPPGTGKTTLAEIIAKKTkSFferlnaveagVADLRKILNKASTRWKEQKRgtllFIDEIHRFNKSQQDVLL 134
                 9********************966699999****999999999999999999999999999999999999999887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.6e-05     0.013      12      46 ..      47      78 ..      33      89 .. 0.73
   2 !    7.9   0.1    0.0073       3.7     117     156 ..      95     135 ..      85     141 .. 0.76
   3 ?    0.8   0.1       1.2   5.8e+02      88     144 ..     183     244 ..     148     251 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.6e-05
      AAA_16 12 LlsalervrsgrpelvllsGesGvGKsslvrellr 46
                L+++++   ++r ++++l G++G+GK++l++ +++
  CCG93278.1 47 LRRLID---ADRIQSIILFGPPGTGKTTLAEIIAK 78
                444444...345589***************87775 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0073
      AAA_16 117 srllellkrllallsrderplvlvlDdlqwadeaslql.la 156
                  +l+  l+++  + ++++r ++l++D+++++  +++++ l+
  CCG93278.1  95 ADLRKILNKASTRWKEQKRGTLLFIDEIHRFNKSQQDVlLP 135
                 56677777777555565778***************999555 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 1.2
      AAA_16  88 e...aesaeleawrekleealaavpelagaea........srllellkrll.allsrderplvlvlDdl 144
                 +   ++++ l+ + +k+++a+++                 +rll+ +  ++ +  +++++pl++ +D +
  CCG93278.1 183 RaltDKERGLGNYEAKIDKAAQEL-------LldicegdaRRLLNYIEVAVlSSFQENKQPLIIGIDVI 244
                 222223335555555555555532.......13333444678888888877888999899999999865 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00013     0.064      24      43 ..      58      77 ..      50     105 .. 0.88
   2 !   10.6   0.0   0.00053      0.26     109     141 ..     116     148 ..     109     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00013
  Mg_chelatase 24 nlllvGppGsGKtmlakrlp 43
                  +++l+GppG+GKt la+ ++
    CCG93278.1 58 SIILFGPPGTGKTTLAEIIA 77
                  799************98765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00053
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledgevtisrak 141
                   +Lf+DE+  f+++  +vL   le+g++++  a+
    CCG93278.1 116 LLFIDEIHRFNKSQQDVLLPDLETGTIKLIGAT 148
                   69*************************987665 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0     1e-07   5.2e-05      24     122 ..      59     163 ..      49     179 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1e-07
                      EEEEEETT--HHHHHHCC--TTS-E.E--SSTTHHHH-HHHHHHHT........TTSEEEEEE-TT--HHHHHHHHHHHHHHTTTT-EEEEEEE CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpw.leifvverlaklpldlleqa........kggtLylkdiadlskaeqkeLlellakaeksslrlVstss 108
                      + l G++G+gk++ A++++k+       +  ve +++   ++l++a        +g +L++ +i+ ++k++q  Ll  l+ +    ++l+ ++ 
       CCG93278.1  59 IILFGPPGTGKTTLAEIIAKKTKSFfERLNAVEAGVADLRKILNKAstrwkeqkRGTLLFIDEIHRFNKSQQDVLLPDLETG---TIKLIGATT 149
                      6789**************998776514566677777666555555444444443999****************999888887...899998887 PP

                      E-TTT..----HHH CS
  Sigma54_activ_2 109 kdleqlleagafde 122
                       +    l a+ + +
       CCG93278.1 150 HNPSFYLTAPLLSR 163
                      77666666665554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.3e-05    0.0066       6      29 ..      57      80 ..      53     103 .. 0.86
   2 ?    5.2   0.0     0.047        23      89     106 ..     111     131 ..      84     148 .. 0.65
   3 ?   -0.9   0.0       3.7   1.8e+03      71     104 ..     211     248 ..     160     274 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.3e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlleql 29
                ++++++G++GtGKTtl++ ++++ 
  CCG93278.1 57 QSIILFGPPGTGKTTLAEIIAKKT 80
                689**************9888775 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.047
      AAA_22  89 ravielliiDEaqhlr.s..e 106
                 +++  ll iDE+++++ s  +
  CCG93278.1 111 QKRGTLLFIDEIHRFNkSqqD 131
                 22247**********863323 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 3.7
      AAA_22  71 erlsseellealeqalrarav....ielliiDEaqhlr 104
                  +++ ++ll+++e a+ + +     + ++ iD +++l+
  CCG93278.1 211 CEGDARRLLNYIEVAVLSSFQenkqPLIIGIDVIENLI 248
                 34688888888888888888888766666677777765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.8e-07     9e-05       5      80 ..      59     129 ..      56     157 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.8e-07
      AAA_14   5 lvitGaRrvGKTtllkqlikell..vkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpewe 80 
                 +++ G+  +GKTtl++ ++k+     ++ + ++  + d r+  + ++    + ++e+   ++ t+lf+DEi++ ++ +
  CCG93278.1  59 IILFGPPGTGKTTLAEIIAKKTKsfFERLNAVEAGVADLRK--ILNK--ASTRWKEQ---KRGTLLFIDEIHRFNKSQ 129
                 7999**********988888777443333333333333333..2222..34555554...589*********997654 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   7.9e-07   0.00039      45     125 ..      54     130 ..      44     137 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 7.9e-07
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrd.gklaralkrllkvdllilDdlgllpldqa 125
                 ++ ++i+l+Gp+G+GK+ la  ++++     ++ +f r++++ + ++  r+  +k++++ k+  + +ll +D++   + +q+
  CCG93278.1  54 DRIQSIILFGPPGTGKTTLAEIIAKK-----TKSFFERLNAVEAGVADLRKIlNKASTRWKEQKRGTLLFIDEIHRFNKSQQ 130
                 56789***************877655.....677888888888888776665256778888899999999999977776665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.6e-06   0.00078       2      33 ..      59      97 ..      59     188 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.6e-06
      AAA_33  2 vllvGlpGsGKstlaerllkklg..avllssdt.....l 33
                ++l G+pG+GK+tlae ++kk++  +++l+  +     l
  CCG93278.1 59 IILFGPPGTGKTTLAEIIAKKTKsfFERLNAVEagvadL 97
                6899*****************999999998755454441 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.5e-06    0.0012       2     108 ..      55     142 ..      54     153 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.5e-06
                 ----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHH CS
       AAA_2   2 piisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLL 100
                 +i si+l gp g+Gkt la+ +a+  +    + + r++a e     +++++++    a++  ++++ g  +++DEi +  +        S+++   +LL
  CCG93278.1  55 RIQSIILFGPPGTGKTTLAEIIAKKTK----SFFERLNAVEAGV-ADLRKILN---KASTRWKEQKRGTLLFIDEIHRFNK--------SQQD---VLL 134
                 67899************9999999887....5999******999.55555554...4566667777888***********9........4444...466 PP

                 HHHH--EE CS
       AAA_2 101 qileggtl 108
                 + le gt+
  CCG93278.1 135 PDLETGTI 142
                 66666665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.4e-06    0.0017       5     122 ..       4     129 ..       1     157 [. 0.78

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.4e-06
      DUF815   5 afrweekeega.lepv.eevdevklddLvgidkqkealv..enteqfleglpannvLLwGarGtGKSslvkallneyaeeg..Lrlievekedlke.lp 96 
                  f w+e+ee++ ++p  + + +++ ++L ++  q+e l+  +  +++++  + + ++L+G  GtGK +l   + +++++    L  +e    dl++ l+
  CCG93278.1   4 LFDWQENEERQpISPTaPLATKMRPRSLEELVGQEEILLpgKPLRRLIDADRIQSIILFGPPGTGKTTLAEIIAKKTKSFFerLNAVEAGVADLRKiLN 102
                 688998555554666533345566666666666777776336789************************999999988855449999999999965378 PP

      DUF815  97 klvellrerperfilfvDDLs.Feeee 122
                 k  +  +e+++  +lf+D +  F++++
  CCG93278.1 103 KASTRWKEQKRGTLLFIDEIHrFNKSQ 129
                 8899999***********984366655 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.5e-05     0.018      24      85 ..      32      89 ..      21     100 .. 0.81
   2 ?    1.1   0.0      0.36   1.8e+02     256     289 ..      95     124 ..      77     129 .. 0.79
   3 ?    0.2   0.0       0.7   3.5e+02     163     194 ..     119     150 ..     102     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.5e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 24 eglvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelgedvpfvalsg 85
                e lvGq++       + +li ++++   +++l Gp+gtGkt la  i+k+      f  l++
  CCG93278.1 32 EELVGQEEILLPGKPLRRLIDADRIQ--SIILFGPPGTGKTTLAEIIAKKTK--SFFERLNA 89
                57999999999999999*******97..9****************9*99754..45555555 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.36
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 256 eklreeinkkvakyveegkaeivpGvlfiDevhm 289
                 ++lr+ +nk  ++++e+ +  +    lfiDe+h 
  CCG93278.1  95 ADLRKILNKASTRWKEQKRGTL----LFIDEIHR 124
                 56899999999****9999765....9*****95 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.7
                 HHHHHHHT--TT-EEEEETTT--EEE-SSS-S CS
       TIP49 163 aeellkekvkegDviviekesGkvkklGrsea 194
                 ++e+++ + +++Dv+  + e+G++k +G +++
  CCG93278.1 119 IDEIHRFNKSQQDVLLPDLETGTIKLIGATTH 150
                 56777777788899999999999999987665 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   8.7e-06    0.0043       2     104 ..      59     155 ..      58     160 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8.7e-06
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanllladeinrappktqsalleameerqvtvegethkl 100
                 ++l g PG++kt+l++ +ak+ +  f+r+        +d+   +++++++++++ +k      ll+ dei r +   q  ll  +e  ++ + g+t++ 
  CCG93278.1  59 IILFGPPGTGKTTLAEIIAKKTKSFFERLNAVEA-GVADL--RKILNKASTRWKEQKR---GTLLFIDEIHRFNKSQQDVLLPDLETGTIKLIGATTHN 151
                 688999***********************97654.44676..5899999988877664...357999*******************9999999988876 PP

       AAA_3 101 pepf 104
                 p+ +
  CCG93278.1 152 PSFY 155
                 6655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.5e-05    0.0074       1      64 [.      59     128 ..      59     153 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.5e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl......klkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkde 64 
                   i+l+Gp+g+GK+tla+ +ak+  + +      +   +d   + n++++ w+  ++ + + id++ + +++
    CCG93278.1  59 IILFGPPGTGKTTLAEIIAKKTKSFFerlnavEAGVADLRKILNKASTRWKEQKRGTLLFIDEIHRFNKS 128
                   789**************99999866666677655555555558888888888888888888888887766 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.8e-05    0.0092       4      38 ..      58      97 ..      55     139 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.8e-05
      AAA_24  4 kiliyGpsgiGKTtlakel.gpkplfi....dtekGlksl 38
                +i+++Gp+g+GKTtla  + +++  f+     +e+G+++l
  CCG93278.1 58 SIILFGPPGTGKTTLAEIIaKKTKSFFerlnAVEAGVADL 97
                799*************999433333333333334444333 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00092      0.46      11      33 ..      57      79 ..      48      90 .. 0.79
   2 ?    4.0   0.0      0.12        58      89     136 ..      99     146 ..      84     155 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00092
      AAA_19 11 kvllvtaGpGtGKTrvlkhival 33
                + +++ ++pGtGKT++ + i + 
  CCG93278.1 57 QSIILFGPPGTGKTTLAEIIAKK 79
                57899*********987766654 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.12
      AAA_19  89 elleeaeeekklqeee.llivDEfqdvd.elqyrLlkallgekkklllvG 136
                 ++l++a+++ k q++  ll++DE+   +  +q  Ll  l  +++ + l+G
  CCG93278.1  99 KILNKASTRWKEQKRGtLLFIDEIHRFNkSQQDVLLPDLE-TGT-IKLIG 146
                 45555555555555555***********666666666665.444.55555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.3e-05     0.012       2      22 ..      59      79 ..      58     121 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.3e-05
      AAA_28  2 ivitGgestGKTtlleaLaar 22
                i+++G+++tGKTtl+e +a++
  CCG93278.1 59 IILFGPPGTGKTTLAEIIAKK 79
                89**************99976 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.2   0.00059      0.29      21      43 ..      59      81 ..      47     149 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00059
      AAA_30 21 avltGpAGtGKttalkalreawe 43
                 +l Gp+GtGKtt+ + +++  +
  CCG93278.1 59 IILFGPPGTGKTTLAEIIAKKTK 81
                5788*********9888876554 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.5e-05     0.017      11      46 ..      49      82 ..      44     123 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.5e-05
                HHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHCC CS
      NB-ARC 11 kLlekdelqslvvalvGmgGvGKttlakqilnksde 46
                +L   d +q   + l G +G GKttla+ i +k ++
  CCG93278.1 49 RLIDADRIQ--SIILFGPPGTGKTTLAEIIAKKTKS 82
                677788888..78899*************9999544 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   5.4e-05     0.027      12      37 ..      57      82 ..      51     207 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.4e-05
                SEEEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlkllagllkp 37
                + + ++G+ G+GK+tL++++a+++k 
  CCG93278.1 57 QSIILFGPPGTGKTTLAEIIAKKTKS 82
                56889****************99876 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0007      0.35      30      60 ..      51      81 ..      44      96 .. 0.83
   2 ?    1.0   0.0      0.49   2.4e+02     119     134 ..     113     128 ..      84     139 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0007
        TniB 30 pkrkrmpnlllvGdsnnGKtmivekFarlhp 60
                 +++r+++++l+G++ +GKt+++e  a++ +
  CCG93278.1 51 IDADRIQSIILFGPPGTGKTTLAEIIAKKTK 81
                5689******************998877665 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.49
        TniB 119 kvrvLiiDEihnllag 134
                 +  +L iDEih++ + 
  CCG93278.1 113 RGTLLFIDEIHRFNKS 128
                 456899*****98754 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00015     0.073      20      50 ..      45      73 ..      27      79 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00015
      AAA_25 20 pprrwlvk.gllpagelallaGapgtGKttla 50
                +p+r l++ + +     ++l+G+pgtGKttla
  CCG93278.1 45 KPLRRLIDaDRI---QSIILFGPPGTGKTTLA 73
                566666663333...689************98 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00019     0.096      17      57 ..      57     100 ..      48     122 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
  Zeta_toxin  17 klillgGqpGAGKselaellkdele...rqgnvvrldpDdlRel 57 
                  +i+l G pG GK++lae ++++++   ++ n+v+    dlR+ 
  CCG93278.1  57 QSIILFGPPGTGKTTLAEIIAKKTKsffERLNAVEAGVADLRKI 100
                 5799*****************99988888899998888888776 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00064      0.32       3      24 ..      59      80 ..      57      84 .. 0.88
   2 ?   -0.5   0.1         2     1e+03      77     159 ..     108     181 ..      94     188 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00064
                EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklalaw 24
                +il G++G GKTtL++ +a + 
  CCG93278.1 59 IILFGPPGTGKTTLAEIIAKKT 80
                7999************999876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2
                 CCSCCC.EEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHH..HCTTSSCE..EEEE--TCCHHHHHH CS
       NACHT  77 lelper.lLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrd..leeqleeaivlevegfsesrrkqlv 159
                 ++ ++r +Ll +D + ++ +  +        +lL +l      +++  l+ +++ + +    + +l++++ +e +++s+++ + l+
  CCG93278.1 108 WKEQKRgTLLFIDEIHRFNKSQQD-------VLLPDL-----ETGTIKLIGATTHNPSFylTAPLLSRSQLFEFKALSKKSLEILL 181
                 444443156666666666653333.......444333.....33344444444444333445555555666666666666665555 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00061      0.31       1      19 [.      62      80 ..      62     115 .. 0.88
   2 ?   -1.6   0.0       6.8   3.4e+03      55      87 ..      98     130 ..      82     148 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00061
                EE-TTSSHHHHHHHHHHHH CS
      AAA_17  1 lGgPGsGKgtqceklveky 19
                +G+PG GK+t++e +++k 
  CCG93278.1 62 FGPPGTGKTTLAEIIAKKT 80
                6**************9987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 6.8
                 HHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTE CS
      AAA_17  55 kelqkeaaekiaeeakkkgvlvdghprikeqag 87 
                 ++++ +a  + +e+++ + + +d   r++++++
  CCG93278.1  98 RKILNKASTRWKEQKRGTLLFIDEIHRFNKSQQ 130
                 455666666777776666678888777755433 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.055        27      23      54 ..      55      86 ..      31     115 .. 0.65
   2 ?    6.9   0.0     0.011       5.6     128     147 ..     109     128 ..      88     158 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.055
                TTSEEEEEESTTSTHHHHHHHHHHHH-S.... CS
      ResIII 23 rdkrglikmaTGtGKTlvaaklierllkkgke 54
                r + +++  + GtGKT +a  ++++ ++ +++
  CCG93278.1 55 RIQSIILFGPPGTGKTTLAEIIAKKTKSFFER 86
                45567788899*****8765555555444443 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.011
                 HHTTT-SEEEEETGGGTTS. CS
      ResIII 128 llrdrfdviiiDEaHrlgak 147
                 ++++r  +++iDE Hr++++
  CCG93278.1 109 KEQKRGTLLFIDEIHRFNKS 128
                 34455559*********994 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00025      0.13     124     164 ..      53      91 ..      23      99 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
       T2SSE 124 kavrerglilvsGgTgsGKttllyallkeinksderivtvE 164
                 +   + ++i++ G+ g+GKttl+ ++ k+ ++  er+  vE
  CCG93278.1  53 AD--RIQSIILFGPPGTGKTTLAEIIAKKTKSFFERLNAVE 91 
                 33..5678999**************9999988888887777 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2    0.0018      0.89      11      46 ..      47      82 ..      45     252 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0018
    ATPase_2 11 leeilerepneiyfiYGpegsGKtaLlkeiienled 46
                l+++++ ++ + + ++Gp g GKt+L   i+++ ++
  CCG93278.1 47 LRRLIDADRIQSIILFGPPGTGKTTLAEIIAKKTKS 82
                566677777778899**********98777766644 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00057      0.29       2      24 ..      59      81 ..      58      87 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00057
                EEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellk 24
                +++ GppG+GKtTl + ++++ k
  CCG93278.1 59 IILFGPPGTGKTTLAEIIAKKTK 81
                8899************9999876 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00042      0.21     116     141 ..      58      83 ..      54     116 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00042
   Parvo_NS1 116 tvwfyGpantGktnlaeaIakavply 141
                  + ++Gp+ tGkt lae Iak ++++
  CCG93278.1  58 SIILFGPPGTGKTTLAEIIAKKTKSF 83 
                 58899***************988765 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00051      0.26       2      77 ..      60     128 ..      59     148 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00051
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtsliltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEylllhaG 77 
                      +  G pG GK+tl   ++++       ++++  +  +++   ++  + ++++    +++++g +l++DE+ + +  
       CCG93278.1  60 ILFGPPGTGKTTLAEIIAKK-------TKSFFERLNAVEAGVADLRKILNKASTRWKEQKRGTLLFIDEIHRFNKS 128
                      56789*******88888888.......333555555555555555555555555555556688******9876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 2875.91
//
Query:       CCG93279.1  [L=343]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-18   67.6   0.0      2e-18   67.0   0.0    1.3  1  VWA_2     von Willebrand factor type A domain
    1.7e-16   60.9   0.0    2.3e-16   60.5   0.0    1.3  1  VWA       von Willebrand factor type A domain
    6.6e-06   26.4   2.3    6.6e-06   26.4   2.3    2.5  3  BatA      Aerotolerance regulator N-terminal


Domain annotation for each model (and alignments):
>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   3.4e-22     2e-18       2     107 .]      93     200 ..      92     200 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 3.4e-22
       VWA_2   2 vfvlDtSgSmrngdygptrleaakdaveallkslpgdrvglvtfsdgpevlipltkdkakilnalrnleak...gggtnlaaaLqlarkalkkrrkgek 97 
                 ++ +D+S+Sm ++d  p+rle+ak ++++++++l+g rvgl++f  ++ v++p+++d++ i++ + +l  +   +ggt++aa ++ +   ++++   +k
  CCG93279.1  93 LLAIDMSKSMLAEDTVPSRLERAKLLASNFVAKLQGERVGLLAFTRNAFVEVPFSTDYDLIQEMISALSLDdfpNGGTSFAAMMEEVLLFFSSEE-RHK 190
                 689******************************************************************99********************9997.9** PP

       VWA_2  98 rvivlitDge 107
                 ++++l++Dge
  CCG93279.1 191 KILILFSDGE 200
                 ********96 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   3.9e-20   2.3e-16       4     142 ..      94     228 ..      91     283 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 3.9e-20
                 EEEE-STTS.CHHHHHHHHHHHHHHHHHHTBTTTTEEEEEEEESSSEEEEEETTSHCHH.HHHHHHHHTGSGGGGSSC-HHHHHHHHHHHHHHHHGTSS CS
         VWA   4 fvlDgSgsm.geenfekvkefikklveklevgpegtrvglvqfssevktefslndyssk.eellsalnnlkysgggttntgkalkyaleklfkssagaR 100
                 +++D S+sm  e+++ +++e +k l++++  + +g rvgl+ f  ++ +e++++++ +  +e++sal+  ++ +ggt+  ++ ++++l  +f+s+++  
  CCG93279.1  94 LAIDMSKSMlAEDTVPSRLERAKLLASNFVAKLQGERVGLLAFTRNAFVEVPFSTDYDLiQEMISALSLDDFPNGGTS-FAAMMEEVLL-FFSSEER-- 188
                 79*******7445555666666666666666666*********************77544*******99666666666.9999999988.7777666.. PP

                 TTSEEEEEEEESS--CSSHTHHHHHHHHGCTEEEEEEEESSS CS
         VWA 101 enakkviilltdGksndgdpkeaaneakeqgikvfavGvgna 142
                   +kk++il++dG++++g  +++++e+k++g++v a+G+g+ 
  CCG93279.1 189 --HKKILILFSDGEDHGGRWEQKLTELKKYGVQVLAIGIGSP 228
                 ..7************************************654 PP

>> BatA  Aerotolerance regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   2.3   1.1e-09   6.6e-06       1      77 []       1      76 [.       1      76 [. 0.76
   2 ?   -3.2   0.0       1.9   1.1e+04      22      37 ..     133     148 ..     131     150 .. 0.84
   3 ?   -0.4   0.1      0.25   1.5e+03       4      21 ..     308     318 ..     295     330 .. 0.57

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.1e-09
        BatA  1 MlpFlnPllLlallllplpiillyllkrrpqevvfsslrll....eevekdeealqrlkknllllLrllalallvlalArP 77
                M +F nP +L++llllpl  + ly+ +    +++f++l  +    ++ve ++e+ q++  ++l++L     +l ++al+rP
  CCG93279.1  1 M-QFKNPQILFGLLLLPL-FLFLYYHRNSASKATFAHLFKVffshQGVEIKREVNQKIPIPWLFFLS---SVLFIVALSRP 76
                8.8***************.*****************9986622334444444446666666666665...56778899998 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.9
        BatA  22 llyllkrrpqevvfss 37 
                 ll +++  + ev+fs+
  CCG93279.1 133 LLAFTRNAFVEVPFST 148
                 7889999999999996 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.25
        BatA   4 FlnPllLlallllplpii 21 
                 Fl P+lLlal       +
  CCG93279.1 308 FLLPALLLAL-------A 318
                 2233333322.......2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2257.67
//
Query:       CCG93280.1  [L=261]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.036   14.4   2.1      0.062   13.7   0.1    2.4  2  FtsH_ext       FtsH Extracellular
      0.069   11.8   9.9      0.091   11.4   9.9    1.1  1  Ndc1_Nup       Nucleoporin protein Ndc1-Nup
        0.4   10.9   3.2       0.54   10.5   3.2    1.2  1  Tyrosinase     Common central domain of tyrosinase
        1.5    7.5   5.6      0.087   11.6   0.1    1.6  2  O-antigen_lig  O-antigen ligase like membrane protein


Domain annotation for each model (and alignments):
>> FtsH_ext  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.4e-05     0.062       7      45 ..      23      58 ..      21     126 .. 0.78
   2 ?   -1.5   0.2      0.72   3.2e+03      95     106 ..     186     197 ..     156     225 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.4e-05
    FtsH_ext  7 lallllllllslfggsgtgstkeisyseFledleqgnve 45
                l lll+ll++    ++++g t++  ys F++ +e+++ +
  CCG93280.1 23 LSLLLFLLFFC---SAQGGNTNRELYSNFIDRIEAVSKK 58
                33444444444...999*****************88755 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.72
    FtsH_ext  95 ealkskgvdves 106
                 + +k+  +++es
  CCG93280.1 186 KEQKESTATSES 197
                 333333222222 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   9.9     2e-05     0.091     325     451 ..     101     228 ..      98     258 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2e-05
    Ndc1_Nup 325 drkggstWsqilkeClklikeltqrinergqpapkaapskapknkasapvkelprlsksplkkk......ddeifgn.sltaeaspks.sssskegvek 415
                 d++  + W   lke lkl++e  ++ n   +       +++p++++++++  +  +s+s+l+k+      + + f + +l+ +++p+  +ss+ke+ e+
  CCG93280.1 101 DPNF-PYWESYLKELLKLLEENASSSNMANK-------KTEPAQNQKEKNALSEPISESNLRKRgmdlkeKNQGFSKdNLSLGKNPSAfPSSKKEQKES 191
                 5666.89*****************9999888.......3334455555666666666677777766654322245557555555555556678888888 PP

    Ndc1_Nup 416 alsslakspgqs.psptarlsprarkllekaksrlls 451
                 + +s +k++++s   p ++ s+++ ++ e+++++ + 
  CCG93280.1 192 TATSESKQNQNSpLRPDNSFSDSENSTGEETEKEIKL 228
                 8888888888777666666664444444444443333 PP

>> Tyrosinase  Common central domain of tyrosinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.2   0.00012      0.54      57     167 ..     103     220 ..      88     259 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
                 EEEB--TSS-.......-SS--HHHH-SEEE-TTCCGE-EEEEE-TTT--BESS........SSS-...G-SBTTCTCB-CTS-CGGGGGS-BTCSSHH CS
  Tyrosinase  57 tlPYWDwaad...ksspldespeslggdgatipeenlsggcvisnplakytlkk........klgp...kakgtlkseenklaanprclkrenaelsae 141
                  +PYW+   +   k    ++ ++s + +++t p +n++ +  +s+p+++ +l+k        +  +   k++ +l ++ +++ ++++ +k+++a+ +++
  CCG93280.1 103 NFPYWESYLKellK-LLEENASSSNMANKKTEPAQNQKEKNALSEPISESNLRKrgmdlkekN--QgfsKDNLSLGKNPSAFPSSKKEQKESTATSESK 198
                 68****99997753.233333333333333444444444788899999999987877654431..1323333333333333333333333333333333 PP

                 HHHH-GGGHHHHH--SHHHHHHHHHH CS
  Tyrosinase 142 latassleellkksesytsfsntleg 167
                 ++++    + l+ ++s+++ +n++  
  CCG93280.1 199 QNQN----SPLRPDNSFSDSENSTGE 220
                 3322....222223333333332222 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.9e-05     0.087     230     353 ..       5     171 ..       4     176 .. 0.68
   2 ?   -3.2   1.7      0.61   2.7e+03     292     343 ..     193     242 ..     179     256 .. 0.35

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.9e-05
  O-antigen_lig 230 llliklilkkkklkkkklllaiillvligill....aiypy.spiyrrkelkekeieiksekk...........eeeeikne.............. 295
                    l+li+ ++k kk+k   l l+++l++l++ ++    + +++ s+++ r+e  +k++e  +++            +++++++               
     CCG93280.1   5 LWLINSVQKGKKIKGHFL-LSLLLFLLFFCSAqggnTNRELySNFIDRIEAVSKKAELTKNDCvmiaqstidlgKKNKLPPGviedgikavelgkm 99 
                    689**99******99999.66666666666554544333325889998888888888766666788877777775555555588888888889999 PP

  O-antigen_lig 296 ..................ikenykseglk...eavleqyeyandkqfsqellkeeveslllsnRdlqlkvlkqvyknad 353
                                      ++e       +   +++ ++ ++  ++q+ ++ l+e++++  l +R + lk+ +q +++++
     CCG93280.1 100 ldpnfpywesylkellklLEE-------NassSNMANKKTEPAQNQKEKNALSEPISESNLRKRGMDLKEKNQGFSKDN 171
                    999999877774444444444.......344444444444444444445557889999999***999999999887554 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.61
  O-antigen_lig 292 ikneikenykseglk.eavleqyeyandkqfsqellkeeveslllsnRdlqlk 343
                      +e  ++ +   l+ ++ ++++e  + +++ +e + +++  + l+n   ++k
     CCG93280.1 193 ATSE-SKQNQNSPLRpDNSFSDSENSTGEETEKEIKLRQI--KQLDNPSTFFK 242
                    1111.11112222223333333333333333333333333..23344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1872  (0.104412); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 1776.92
//
Query:       CCG93281.1  [L=870]
Description: TPR repeats containing protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-57  194.9   0.0    3.6e-57  194.3   0.0    1.2  1  BatD      Oxygen tolerance
    0.00013   21.7   0.0    0.00026   20.8   0.0    1.5  1  SH3_4     Bacterial SH3 domain
    0.00027   20.5   0.0     0.0012   18.4   0.0    2.0  2  SH3_2     Variant SH3 domain
     0.0026   17.3   0.0     0.0056   16.3   0.0    1.5  1  SH3_1     SH3 domain
     0.0069   16.4   0.6       0.38   11.0   0.0    2.9  2  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.034   14.4   0.2      0.076   13.3   0.2    1.5  1  SH3_3     Bacterial SH3 domain
       0.16   12.0   0.0        7.7    6.6   0.0    2.7  2  TPR_3     Tetratricopeptide repeat
       0.16   11.8   0.6        1.9    8.4   0.0    2.6  2  TPR_1     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> BatD  Oxygen tolerance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.3   0.0   1.6e-60   3.6e-57      21     475 ..      14     456 ..       9     460 .. 0.81

  Alignments for each domain:
  == domain 1  score: 194.3 bits;  conditional E-value: 1.6e-60
        BatD  21 vevgetfrLtftvngasgepdfsapslekdfevlsgsqssstqiinGkssssssktwtytLapkkeGtltIpaatievdgktyksnpitikVlkseasq 119
                 +e g + +L+++++++s ++++++p++ + +e+   s s++        +  ++  + + ++p ++G++ Ip++ i++d++ ++  pi+++V    ++ 
  CCG93281.1  14 LEPGVSAHLSLIFENCSPQDEVKPPKV-AFLEIEAPSISRNS-------R--NELIYDFPIIPHQPGNYIIPPFLISTDHGLVEIPPISFTV----KEV 98 
                 666777778888888887788887755.55555555655555.......3..3566************************************....567 PP

        BatD 120 sssaisdedlflraevskksvYvqeqvlvtlklytrvnvnledgklpdl..egflveelglpekkqyeetvnGrryrvvelrryalfPqksGkltIppl 216
                 + ++is++ +  ++ + +++++ +e+++++++l tr+ + l+ ++ p++  ++fl++++g  +++    + nG        +++ l   k+Gk+++pp+
  CCG93281.1  99 EIAPISADGVDAQVLIPQRTLWKGEPFVIEYRLLTRSGTFLDITSQPEWdpKDFLSNRWG--KPQRVILNANGTYASGLR-YTTTLLSLKAGKIVLPPI 194
                 8999********************************3233588888999889********..999999999997666666.89999************* PP

        BatD 217 efdgtvevrsqrrdfngggyrevkkrvsspavtitVkplPaeglPadFsgavgsfslsaslskdelkvgepltltvtisGtGN.lkllqlPelnfpegf 314
                 + ++t+e ++  r++++ +   ++++ +++++ i++ plPa + P dFs+a+g f+ls ++++ e  +gep++l++ i+GtGN    ++lPe +  +g+
  CCG93281.1 195 SQQLTLEIERFGRGLFS-QPIVKPIHSTTEPKVIEIAPLPA-P-PPDFSEAIGTFKLSCKVNPVEAIQGEPISLSIRIEGTGNwAVPWKLPEYPPCKGI 290
                 ******99999888555.679*******************9.5.788************************************9999************ PP

        BatD 315 evYdpkpedntkktgnglsGsrteeyalvPrkaGkytipaiefsyFDtatkkyetatlpeitikVekgaaaasspasstsaspaqkeevkllgkdirfi 413
                 +v +  p+++++++ + ++G  ++e +l+P   G++++pa +f+yFD+++++y+t+++++i+++V+k +         ++++p +k+e  +  +  ++i
  CCG93281.1 291 KVINSLPSRQIDPE-SLFTGVLKMELVLIPDIFGEIDLPAYSFTYFDVTQGEYQTIKSDPIHLSVKKSSL--------SKQTPDNKQELLSDRS--QPI 378
                 ************96.7*************************************************65552........2233444444333222..234 PP

        BatD 414 k..geaslkkkgsff.........lfw.....lllllplllfvvllllwrkrrrenadvaaskkkkanklarkrlkeA 475
                 +     ++ ++g ++           w      ll + + lf+++ll+w + + +    +++k+ +  +   +++++A
  CCG93281.1 379 NtgYPLDMLPTGPLLgmgkglapfPPWdlgkeSLLFTFIFLFLWCLLCWDRVAHKPLLLQKKKASHCLRTIPQAIAKA 456
                 323344444444422244544455566889986666666666789999999888877777777665555555555555 PP

>> SH3_4  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.2e-07   0.00026       5      52 ..     796     843 ..     793     846 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.2e-07
       SH3_4   5 vnlrsgPskkaaviayleaGvpvrvvackgnWcrvrDadGatGWiyqs 52 
                  +lrs P++  +    l+aG + +v + + +W++++  +G+ GW+++ 
  CCG93281.1 796 TPLRSVPTEVQQQSLPLKAGSVIKVIKAYLGWYKIEFMNGQNGWVRSQ 843
                 58999999999999*******************************986 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2   2.6e+03       7      24 ..     166     190 ..     162     191 .. 0.60
   2 !   18.4   0.0   5.5e-07    0.0012      15      54 ..     804     845 ..     794     847 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
                 -B-SCGCCB.......--B-TTEEE CS
       SH3_2   7 dyvgedkse.......LsfkkGdvi 24 
                 + +g++ s+       Ls+k+G ++
  CCG93281.1 166 NANGTYASGlrytttlLSLKAGKIV 190
                 5566666664555555888888665 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 5.5e-07
                 B.....--B-TTEEEEEE..EEEECTTEEEEEE.CCCEEEEEGCGE CS
       SH3_2  15 e.....LsfkkGdvikvlslgskdsdgwwegev.gGrvGlfPsslv 54 
                 e     L +k+G vikv+    k   gw++ e  +G+ G++ s++v
  CCG93281.1 804 EvqqqsLPLKAGSVIKVI----KAYLGWYKIEFmNGQNGWVRSQCV 845
                 24445599**********....9999*******************9 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.5e-06    0.0056       9      46 ..     805     840 ..     803     840 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.5e-06
                 SSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEE CS
       SH3_1   9 eesdELsfkkGDviivleksedgWwkgrlkgtgkeGli 46 
                 ++++ L++k G vi+v++    gW+k + ++ g+ G++
  CCG93281.1 805 VQQQSLPLKAGSVIKVIK-AYLGWYKIEFMN-GQNGWV 840
                 57788*************.7779*******9.6****8 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.078   1.7e+02       7      25 ..     625     643 ..     623     644 .. 0.81
   2 !   11.0   0.0   0.00017      0.38       5      34 .]     657     686 ..     653     686 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.078
       TPR_2   7 lGlayyklgdyeeAleafe 25 
                  ++ +y++g++ +A++ ++
  CCG93281.1 625 EAYRCYEKGEFSKAIDIWK 643
                 5788999999999998776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00017
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPnn 34 
                 +nlGla  ++ ++++Al  + +A  l+P+n
  CCG93281.1 657 NNLGLAFSQQEQWQRALGEWTAAFLLAPRN 686
                 89**************************87 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   3.4e-05     0.076      19      54 ..     812     845 ..     812     846 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.4e-05
       SH3_3  19 lpyGekVevleetgggeWykvrtddgteGwvssgyl 54 
                 l++G++++v++   g  Wyk++  +g+ Gwv s+++
  CCG93281.1 812 LKAGSVIKVIKAYLG--WYKIEFMNGQNGWVRSQCV 845
                 689************..****999*******99887 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.089     2e+02      16      31 ..     238     251 ..     238     253 .. 0.89
   2 ?    6.6   0.0    0.0034       7.7       8      22 ..     626     640 ..     621     643 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.089
                 -HHHHHHH..HHHHHH CS
       TPR_3  16 kyqeArelfsYallai 31 
                 +++eA+++  ++l+++
  CCG93281.1 238 DFSEAIGT--FKLSCK 251
                 689*****..88**97 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0034
                 HHHHHHTT-HHHHHH CS
       TPR_3   8 AaefynkkkyqeAre 22 
                 A+ +y k+++++A++
  CCG93281.1 626 AYRCYEKGEFSKAID 640
                 899**********98 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.25   5.5e+02      11      22 ..     629     640 ..     624     644 .. 0.65
   2 ?    8.4   0.0   0.00086       1.9       2      21 ..     654     673 ..     653     686 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.25
                 HHHTT-HHHHHH CS
       TPR_1  11 yfklgkydeAle 22 
                 ++++g++ +A++
  CCG93281.1 629 CYEKGEFSKAID 640
                 456677777776 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00086
                 HHHHHHHHHHHHTT-HHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAl 21 
                 k+ +nlG+a+ ++++++ Al
  CCG93281.1 654 KTRNNLGLAFSQQEQWQRAL 673
                 6789***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 6300.31
//
Query:       CCG93282.1  [L=388]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2831.19
//
Query:       CCG93283.1  [L=102]
Description: Ferredoxin [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-20   71.1   0.1      7e-20   70.8   0.1    1.1  1  Rieske    Rieske [2Fe-2S] domain
    4.6e-14   52.2   0.0    5.6e-14   51.9   0.0    1.0  1  Rieske_2  Rieske-like [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.1   7.8e-24     7e-20       7      88 ..       9      89 ..       4      90 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 7.8e-24
                EGGGC-TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEE.TTSBEEE-TTHHHEEEE CS
      Rieske  7 kesdvpegdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwayd.adGkvikgPaprplaty 88
                k+s++peg  + v++ g++++++   +g +yAl+d+C+H+g plseg + e+g++eCp+Hg++++ ++G+v+ gPa+r ++ y
  CCG93283.1  9 KASEIPEGGAKCVELEGKKIAIFCY-KGAYYALDDTCPHEGGPLSEGFL-EEGEVECPWHGARFSlKTGEVLCGPATRGVRAY 89
                689*********************6.***********************.677************************998877 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   6.2e-18   5.6e-14       7     103 ..       9     100 ..       5     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 6.2e-18
                 ECCCS-TTB-EEEEETTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS.-TTSB-BEE-EEESTSEEEE CS
    Rieske_2   7 kledlvketgvaalvdgkqvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecle.deevslkvypvrvedgkvev 103
                 k ++++++  +++ ++gk++a+f + k+  yA+d+++p  e  +ls+G++++      v++P ++ +f+LktGe+l   +++ +++y+++  ++ +ev
  CCG93283.1   9 KASEIPEGGAKCVELEGKKIAIFCY-KGAYYALDDTCPH-EGGPLSEGFLEEG----EVECPWHGARFSLKTGEVLCgPATRGVRAYHCQKIGEDLEV 100
                 67899*******************9.9************.79********987....79****************97366799*****9988888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 775.49
//
Query:       CCG93284.1  [L=345]
Description: Uncharacterized erfK/srfK family protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-16   58.9   0.1    1.2e-15   58.2   0.1    1.4  1  YkuD      L,D-transpeptidase catalytic domain
     0.0063   16.0   0.0      0.023   14.2   0.0    1.9  2  YkuD_2    L,D-transpeptidase catalytic domain


Domain annotation for each model (and alignments):
>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.1   1.3e-19   1.2e-15       2     146 .]      41     198 ..      40     198 .. 0.77

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.3e-19
                 EEEEEETTTTEEEEE....EETTEEEEEEE-BEB....TTS.TTSE---EEEEECEEEEEEE.....EEGGGGT--TTSTT.EEEEEEEECCCTT.... CS
        YkuD   2 kyivvdlaeqrllvl....yengklvlsfpvsvG....gkkegdreTPlGtfrikskvrnptw...nvppsiarkeiypklrkdpeyldkknskv.... 85 
                 ++i v++ +q++ +l     +ng+  +++pvs+     g++ ++ +TP+G+f i  k  +      ++++  + ++++  +++dp++            
  CCG93284.1  41 NLIRVSIHDQKM-ELiqniGKNGESHRYYPVSTSkygiGDEWNSYKTPIGRFVIAKKIGDGIPmggKFYHRKFTGDVIKLTAYDPSKPA-----Fdhds 133
                 678999999777.775665678889999****9999996666777**********8887776211134444444444444455555555.....15555 PP

                 ........CECCCCEEE-STTS-EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEEEE CS
        YkuD  86 ........algkvkfvfpngsgiyiHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpvvi 146
                         +  +++    + +gi+iHgt++  l     g++ S GCir+++ d++ely+lv ++tpv+i
  CCG93284.1 134 iltrilwlRGLDSQNKNSFYRGIFIHGTNQEPLV----GQPVSYGCIRMKNRDVLELYDLVGENTPVYI 198
                 5******9999999999*********98888665....56***************************98 PP

>> YkuD_2  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.18   1.6e+03      74      92 ..      77      95 ..      39      99 .. 0.75
   2 !   14.2   0.0   2.5e-06     0.023     102     168 ..     139     198 ..     132     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.18
      YkuD_2 74 FsneegSkksslGfyktge 92
                + +e +S+k+ +G +++++
  CCG93284.1 77 IGDEWNSYKTPIGRFVIAK 95
                5577889999999998876 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.5e-06
      YkuD_2 102 lrLeGlekgiNdnAreRaivlHgadyvseefikklgrlgrSlGCpavseelakkiiellkegsllfi 168
                 l L+Gl+++ N+n++ R i +Hg++   e ++ +      S GC  ++++ + ++ +l+ e++ ++i
  CCG93284.1 139 LWLRGLDSQ-NKNSFYRGIFIHGTNQ--EPLVGQ----PVSYGCIRMKNRDVLELYDLVGENTPVYI 198
                 5699*****.*************874..444443....4699***9999999999999999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 2154.09
//
Query:       CCG93285.1  [L=252]
Description: Vegetative protein 296 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-24   85.2   0.0    7.3e-24   84.8   0.0    1.1  1  ABC_tran        ABC transporter
    2.7e-06   27.0   0.2      0.034   13.6   0.1    2.2  2  SMC_N           RecF/RecN/SMC N terminal domain
    0.00019   21.1   0.1    0.00039   20.1   0.1    1.5  1  AAA_29          P-loop containing region of AAA domain
     0.0031   17.4   0.0     0.0077   16.1   0.0    1.6  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
  ------ inclusion threshold ------
      0.011   16.2   0.0      0.029   14.9   0.0    1.8  2  AAA_18          AAA domain
      0.012   15.8   0.0      0.015   15.5   0.0    1.3  1  AAA_33          AAA domain
      0.016   13.8   0.0      0.029   13.0   0.0    1.3  1  AAA_13          AAA domain
      0.021   15.4   2.4      0.024   15.1   1.3    1.7  2  AAA_23          AAA domain
      0.024   14.7   0.0        7.7    6.6   0.0    2.3  2  AAA_14          AAA domain
      0.043   13.7   0.1      0.075   12.9   0.1    1.3  1  RsgA_GTPase     RsgA GTPase
      0.045   14.0   0.1       0.14   12.5   0.1    1.9  1  AAA_22          AAA domain
      0.069   13.4   0.0       0.11   12.8   0.0    1.4  1  AAA_28          AAA domain
       0.11   12.1   0.0       0.17   11.6   0.0    1.2  1  AAA_30          AAA domain
       0.12   12.0   0.1       0.21   11.1   0.1    1.3  1  AAA_27          AAA domain
       0.13   11.9   0.0       0.23   11.1   0.0    1.4  1  Cytidylate_kin  Cytidylate kinase
       0.15   12.4   0.1         18    5.8   0.0    2.2  2  AAA             ATPase family associated with various cellula
       0.17   11.5   0.0       0.24   11.0   0.0    1.6  1  AAA_25          AAA domain
       0.18   12.3   0.0        4.5    7.8   0.0    2.2  2  Afi1            Docking domain of Afi1 for Arf3 in vesicle tr


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   7.3e-27   7.3e-24       2     135 ..      19     171 ..      18     173 .. 0.91

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 7.3e-27
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren.................. 79 
                 k ++l++++ge++ai+G+nG+GKStL kll+g+ +    +G++lldg+++ +  + e++rk + + +q p+  p++tv++                   
  CCG93285.1  19 KGITLEINPGEVHAIMGPNGSGKSTLSKLLTGHPDYevYSGTVLLDGEPILDlAPDERSRKGLFMAFQYPCEIPGVTVANFlraalqarlpegktlnit 117
                 789*****************************9877669*************9************************9999***999999999999888 PP

                 HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135
                 +  +e+++a++kl ++   +   ++  + +SgG+k+r ++ ++ + kpk  +lDE 
  CCG93285.1 118 DFYKELYAAMEKLAMDR--KFSSRYVNEGFSGGEKKRNEILQMAILKPKYAILDET 171
                 77888999999999887..333334579***************************6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   3.4e-05     0.034      25      40 ..      29      44 ..      15      48 .. 0.79
   2 !   11.5   0.0   0.00015      0.15     136     203 ..     144     208 ..     111     225 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.4e-05
                SEEEEEESTTSSHHHH CS
                xxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnl 40
                ++ ai+GpNGSGKs l
  CCG93285.1 29 EVHAIMGPNGSGKSTL 44
                4889**********87 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00015
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemle 203
                  +SgGek+   + L +Ai k k a   +lDe d+ LD    k+va+ +++ +   + ++ i++ +++l+
  CCG93285.1 144 GFSGGEKKRNEI-LQMAILKPKYA---ILDETDSGLDIDALKIVANGVNALKGPhMGILLITHYQRLLN 208
                 579999997776.77788776654...89*******************976654399999999988776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   3.9e-07   0.00039      14      38 ..      20      44 ..      16      54 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.9e-07
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTl 38
                g t+ei++ +++ ++Gp+GsGKSTl
  CCG93285.1 20 GITLEINPGEVHAIMGPNGSGKSTL 44
                5688999999**************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   7.7e-06    0.0077       2      22 ..      31      51 ..      30      80 .. 0.79
   2 ?   -1.7   0.0       1.9   1.9e+03     261     299 ..     166     204 ..     112     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.7e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                 ++ GpNgsGKS+L ++l + 
  CCG93285.1 31 HAIMGPNGSGKSTLSKLLTGH 51
                5799************99765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.9
      AAA_21 261 lliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299
                  ++DE ++gL+  +l+ ++  +++l+     ++l TH  
  CCG93285.1 166 AILDETDSGLDIDALKIVANGVNALKGPHMGILLITHYQ 204
                 467777888877777777766666666666666666655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.9e-05     0.029       3      36 ..      33      76 ..      32     129 .. 0.78
   2 ?   -0.9   0.0       2.2   2.2e+03      69      69 ..     173     173 ..      94     246 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.9e-05
      AAA_18  3 ltGtpGvGKttlakeLskrlgf..........gvnlrdvakeng 36
                ++G+ G+GK+tl+k L  +  +          g+ + d+a++++
  CCG93285.1 33 IMGPNGSGKSTLSKLLTGHPDYevysgtvlldGEPILDLAPDER 76
                89**************7776664444444455555555554444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.2
      AAA_18  69 s 69 
                 s
  CCG93285.1 173 S 173
                 1 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   1.5e-05     0.015       3      32 ..      32      61 ..      30     160 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-05
      AAA_33  3 llvGlpGsGKstlaerllkklgavllssdt 32
                 + G++GsGKstl++ l  + ++++ s  +
  CCG93285.1 32 AIMGPNGSGKSTLSKLLTGHPDYEVYSGTV 61
                678************999888898887766 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.9e-05     0.029      18      38 ..      30      50 ..      21      64 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.9e-05
      AAA_13 18 iNliYGwNGaGKTtLSrllrs 38
                +  i G NG+GK+tLS+ll  
  CCG93285.1 30 VHAIMGPNGSGKSTLSKLLTG 50
                55799*************976 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   1.3   2.4e-05     0.024      11      35 ..      19      44 ..       2      50 .. 0.67
   2 ?   -2.0   0.0       4.2   4.1e+03      36      73 ..      97     151 ..      95     174 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.4e-05
      AAA_23 11 rdqeidFsk.gltlItGpNGaGKTTi 35
                ++ +++ ++  + +I GpNG+GK+T+
  CCG93285.1 19 KGITLEINPgEVHAIMGPNGSGKSTL 44
                5555666773588************9 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.2
      AAA_23  36 ldAiklaLygetprlsrks.................grgfeksdveiesegkvka 73 
                  ++++ aL  + p+ ++ +                 +r+f ++ v+ +++g  k+
  CCG93285.1  97 ANFLRAALQARLPEGKTLNitdfykelyaameklamDRKFSSRYVNEGFSGGEKK 151
                 5666666666666555555555555555555555555555555555555544444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0077       7.7       3      23 ..      29      49 ..      27      75 .. 0.87
   2 ?    6.2   0.0      0.01        10      14      74 ..     111     172 ..     110     236 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0077
      AAA_14  3 kilvitGaRrvGKTtllkqli 23
                ++ +i+G+  +GK+tl k l 
  CCG93285.1 29 EVHAIMGPNGSGKSTLSKLLT 49
                5778************87765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.01
      AAA_14  14 GKTtllkqlikellvkkesilyinldderdkkladpe.....kllelilek.lkeekktylflDEiq 74 
                 GKT  + +++kel+     +  +++d++  +++ ++      k  ++il++ +   k +y +lDE  
  CCG93285.1 111 GKTLNITDFYKELY---AAMEKLAMDRKFSSRYVNEGfsggeKKRNEILQMaI--LKPKYAILDETD 172
                 9*************...566666666655543333222244455566777633..36799*****75 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   7.5e-05     0.075      98     127 ..      26      56 ..      11      61 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.5e-05
                  TT.SEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  98 kd.ktsvlvGqSGvGKStLinallpelelkt 127
                  +  ++ +++G+ G GKStL + l+++ + ++
   CCG93285.1  26 NPgEVHAIMGPNGSGKSTLSKLLTGHPDYEV 56 
                  444899*****************99877665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00014      0.14       9      38 ..      32      76 ..      26     210 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
      AAA_22  9 vvtGesGtGKTtllrrlleqldeeakaee...............e 38
                +++G+ G+GK+tl + l+   d e +  +               +
  CCG93285.1 32 AIMGPNGSGKSTLSKLLTGHPDYEVYSGTvlldgepildlapdeR 76
                79*************999877544444335665555555555552 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00011      0.11       3      27 ..      32      57 ..      30     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
      AAA_28  3 vitGgestGKTtlleaLaar.gypvv 27
                +i+G+ ++GK+tl++ L+ + +y+v+
  CCG93285.1 32 AIMGPNGSGKSTLSKLLTGHpDYEVY 57
                79****************88855543 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00017      0.17      18      91 ..      28     114 ..      21     135 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
      AAA_30  18 drvavltGpAGtGKttalkalreaweaag.........grviglAptgkaAkvLaeelg....ieastiakllkrlkgrarlepg.tl 91 
                   v+++ Gp G+GK+t+ k l+ + + +          ++++ lAp ++  k L  +++    i++ t+a++l++  + arl +g tl
  CCG93285.1  28 GEVHAIMGPNGSGKSTLSKLLTGHPDYEVysgtvlldgEPILDLAPDERSRKGLFMAFQypceIPGVTVANFLRAALQ-ARLPEGkTL 114
                 46999************9999887666644678999989999999999999998765553333799999999955443.455554455 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00021      0.21      20      43 ..      22      45 ..      14      51 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
      AAA_27 20 dfsaeeadlhliyGpNEAGKstal 43
                +++ +  ++h i+GpN +GKst+ 
  CCG93285.1 22 TLEINPGEVHAIMGPNGSGKSTLS 45
                455557899*************86 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00024      0.23       2      25 ..      32      55 ..      31      62 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
                    EEE-STTSSHHHHHHHHHHHHT-E CS
  Cytidylate_kin  2 aiDGPagsGKssvaralaeklglk 25
                    ai GP gsGKs+++++l+ + +++
      CCG93285.1 32 AIMGPNGSGKSTLSKLLTGHPDYE 55
                    799*************98776665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.018        18       3      21 ..      33      51 ..      32      69 .. 0.85
   2 ?    4.4   0.0     0.046        46      10      69 ..     111     173 ..     110     193 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.018
                EESSTTSSHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavake 21
                ++Gp G GK++l k +  +
  CCG93285.1 33 IMGPNGSGKSTLSKLLTGH 51
                68**********9998765 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.046
                 SHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTH....HHHHHHHHHHHHHHTS..TSEEEEEETGGG CS
         AAA  10 GKTllakavakelgvefleisgsell.skyvge....sekkirelfkeakeka..kpsilfiDEida 69 
                 GKTl +    kel + + ++ + + + s yv e    +ekk +e+++     a  kp+  ++DE d+
  CCG93285.1 111 GKTLNITDFYKELYAAMEKLAMDRKFsSRYVNEgfsgGEKKRNEILQM----AilKPKYAILDETDS 173
                 9************99999998888885556655111155555555555....444689999999998 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00024      0.24      30      50 ..      25      45 ..      15     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00024
      AAA_25 30 lpagelallaGapgtGKttla 50
                +  ge+++++G+ g+GK+tl 
  CCG93285.1 25 INPGEVHAIMGPNGSGKSTLS 45
                5679***************96 PP

>> Afi1  Docking domain of Afi1 for Arf3 in vesicle trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0045       4.5      10      26 ..      78      94 ..      76     124 .. 0.81
   2 ?    2.2   0.0      0.24   2.4e+02      28      44 ..     202     218 ..     194     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0045
        Afi1 10 dkGpvikhqYPkaipgd 26
                +kG  +  qYP++ipg 
  CCG93285.1 78 RKGLFMAFQYPCEIPGV 94
                699************93 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.24
        Afi1  28 tlseLAelmlPdqvhkr 44 
                 + + L +++lPd vh++
  CCG93285.1 202 HYQRLLNYILPDHVHVM 218
                 567899*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1816.89
//
Query:       CCG93286.1  [L=474]
Description: component of SufBCD complex [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-62  211.1   0.3      2e-62  210.8   0.3    1.1  1  UPF0051   Uncharacterized protein family (UPF0051)


Domain annotation for each model (and alignments):
>> UPF0051  Uncharacterized protein family (UPF0051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.8   0.3   1.1e-66     2e-62       2     218 .]     220     445 ..     219     445 .. 0.97

  Alignments for each domain:
  == domain 1  score: 210.8 bits;  conditional E-value: 1.1e-66
     UPF0051   2 qfertlivveegaevtiieeyagc............gvveifvgenAklkyvkvqnwsedavnlstkraeegrdaklelttvslggkltrkepsvelkg 88 
                 qfertli+++eg+evt++   +gc            +vve+++  +Ak++y++vqnws++++nl+tkra   ++a++++ ++++g++lt+k+p v+lkg
  CCG93286.1 220 QFERTLIIADEGSEVTYM---EGCtaprfetstlhsAVVELVAMPGAKIQYITVQNWSSNVFNLVTKRAIAMEEAEVRWLDCNIGSRLTMKYPGVVLKG 315
                 89****************...666666677777777*********************************989999************************ PP

     UPF0051  89 egaeaelnglylakgkqhldtrtkvdhngpntssrilskgvlkdearavfrgkikvrkgaqktdahqenrnLllsdkaradtiPeleidaddvkasHgA 187
                 ++a++e+ +++la+ +qh+dt+ k+ h++ +t+s+i+sk+++ +++ra++rg + + ++ +++++++e+++Ll+++ +r dt P + +  ++   +H+A
  CCG93286.1 316 RKARGEVLSIALANSGQHQDTGAKMYHAADETTSNIISKSISIGSGRASYRGLVSMPNHLKNCKNNTECDALLINSSSRTDTYPAITVIGNKNATQHEA 414
                 *************************************************************************************************** PP

     UPF0051 188 tvGkideeqlfYLmsRGlseeeArrlivrgf 218
                 +v+ki++eqlfY+++RGl+e+eA++l v+gf
  CCG93286.1 415 SVSKISAEQLFYMQQRGLPEDEAMSLSVNGF 445
                 ******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3363.74
//
Query:       CCG93287.1  [L=430]
Description: Cysteine desulfurase activator SufB [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-59  200.7   0.0    2.9e-59  200.4   0.0    1.1  1  UPF0051   Uncharacterized protein family (UPF0051)


Domain annotation for each model (and alignments):
>> UPF0051  Uncharacterized protein family (UPF0051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.4   0.0   1.6e-63   2.9e-59       3     209 ..     180     394 ..     178     403 .. 0.96

  Alignments for each domain:
  == domain 1  score: 200.4 bits;  conditional E-value: 1.6e-63
     UPF0051   3 fertlivveegaevtiieey........agcgvveifvgenAklkyvkvqnwsedavnlstkraeegrdaklelttvslggkltrkepsvelkgegaea 93 
                 ++++l+v+eeg+++ +  ++        ++c+ +e ++++++++++v+vq+w++++  +  + +++g+da+ ++ +v++gg+ +r e +++l+g g++a
  CCG93287.1 180 YPHCLFVLEEGSKARVQLNFrsinerggFSCSAIESYLAQSSHFELVSVQQWAKEVNSFLFSLTDVGQDAQSTSLYVNVGGAYNRFEGKTRLSGAGGSA 278
                 689**************9999999999*99************************9999999999*********************************** PP

     UPF0051  94 elnglylakgkqhldtrtkvdhngpntssrilskgvlkdearavfrgkikvrkgaqktdahqenrnLllsdkaradtiPeleidaddvkasHgAtvGki 192
                 e+ ++++ak++q++d+rt+ +h +p t+s++l+k+vl d+a+++f g+i+v+++aqktda+q+n+nL+l+++a+a++ P lei addv+++HgAt+G++
  CCG93287.1 279 EVLSATIAKNNQEFDQRTLQIHSAPYTTSNLLFKNVLFDSAKTIFSGMIDVSPEAQKTDAYQSNKNLILGENAEANSLPGLEIMADDVRCTHGATTGSL 377
                 *************************************************************************************************** PP

     UPF0051 193 deeqlfYLmsRGlseee 209
                 ++e+lfY ++RG+++  
  CCG93287.1 378 AKEELFYSQQRGIPKPV 394
                 *************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3032.07
//
Query:       CCG93288.1  [L=184]
Description: Predicted metal-sulfur cluster biosynthetic enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-15   56.8   0.1    2.8e-15   56.2   0.1    1.3  1  FeS_assembly_P  Iron-sulfur cluster assembly protein


Domain annotation for each model (and alignments):
>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.1   1.6e-19   2.8e-15       4      74 .]      87     160 ..      84     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 1.6e-19
                     HHHHHTT-B-TTTSSBCCCCT---EEEE-T.....-EEEEEE--SSTT-TTHHHHHHHHHHHHC.STT--EEEEEE CS
  FeS_assembly_P   4 vlaaLrtVtDPelgvdlvslglvreidieg.....gkVsvditltypacslaeairadaeaalralpgvevveVev 74 
                     ++  L++V+DPe++v++v+lglv++++i+        V+v++tlt p+c + + +++da++ +  +p   v e++v
      CCG93288.1  87 IYSRLKEVYDPEIPVNIVDLGLVYDCQIKRkedgsYAVAVKMTLTAPGCGMGTILAQDAQSRILEIPS--VSEAQV 160
                     8899************************998888889*******************************..555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.33
# Mc/sec: 1645.92
//
Query:       CCG93289.1  [L=428]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-08   33.8   0.0      7e-08   32.8   0.0    1.7  1  Amidase_3  N-acetylmuramoyl-L-alanine amidase


Domain annotation for each model (and alignments):
>> Amidase_3  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   3.9e-12     7e-08       1      82 [.     128     266 ..     128     389 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 3.9e-12
   Amidase_3   1 ividpGH.Ggk.dp.....Gavg.knglkEkdlnlkvalklaklLeakgaeVvltrdddksv..................................... 54 
                 i++dpGH Ggk  +      ++g +  + E++ln++v ++ aklLe++ga+Vv t++d + v                                     
  CCG93289.1 128 ICLDPGHiGGKwAKmeerfFQIGsDPPVIEAELNMNVCKRAAKLLEDAGAKVVWTKKDYEPVtelrpanlrkdaiallfpfenqdnlpyrfsdeiekki 226
                 89*****8555244444442666667799*****************************65666789********************************* PP

   Amidase_3  55 ............slkeranianksradlfvsiHadsaans 82 
                             +++ ra+++++ r+d+ +++H+++ + s
  CCG93289.1 227 sltaerlfyrnaEIRARAELVDRLRPDITICVHFNADKWS 266
                 ***********************************98544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3360.71
//
Query:       CCG93290.1  [L=192]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1566.33
//
Query:       CCG93291.1  [L=365]
Description: Predicted nucleoside-diphosphate-sugar epimerase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-23   81.4   0.0    9.6e-23   81.0   0.0    1.2  1  NAD_binding_10   NAD(P)H-binding
    5.2e-22   78.5   0.0    3.8e-21   75.7   0.0    1.9  1  Epimerase        NAD dependent epimerase/dehydratase family
    2.6e-20   73.0   0.0    3.8e-20   72.5   0.0    1.2  1  NmrA             NmrA-like family
    6.3e-19   68.1   0.0    4.8e-14   52.0   0.3    2.2  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    6.4e-09   35.6   0.1      2e-08   34.0   0.1    1.7  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    6.8e-09   35.3   1.1    0.00065   18.9   0.0    3.2  2  NAD_binding_4    Male sterility protein
    3.3e-06   26.4   0.0    0.00021   20.5   0.0    2.3  1  RmlD_sub_bind    RmlD substrate binding domain
    6.7e-05   22.4   0.1    0.00011   21.7   0.1    1.4  1  adh_short        short chain dehydrogenase
     0.0079   15.4   0.5      0.031   13.4   0.5    1.8  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
      0.034   14.4   0.1      0.092   13.0   0.1    1.7  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.038   13.9   0.4      0.084   12.8   0.4    1.8  1  KR               KR domain
       0.15   11.4   0.0       0.27   10.6   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   6.5e-26   9.6e-23       1     146 [.       8     149 ..       8     203 .. 0.87

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 6.5e-26
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-.....--TCCHHHH....HHHHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsal.....ggggkdeeg....aknivdaak 86 
                     G+tG +G+ +vk l +  g++v++ +Rn +++++l  e  +e +egd++d +  ++  +g+daV+  +      g+++ +++    +kn+++a k
      CCG93291.1   8 GGTGFIGKSVVKLLCQL-GYKVRVSTRNLKQIKALY-ELPCEFLEGDLSDLSFARKCSSGIDAVIHLVgiiveQGQDTFKKVhvqiTKNMIQASK 100
                     9****************.5**************997.6899***********************9999777654444433335566********* PP

                     HCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CE CS
  NAD_binding_10  87 eagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggL 146
                     e+gvkRf+ +sa+g++    ++         ++y++ k  aeel+r+s+ldwTi +p+  
      CCG93291.1 101 ENGVKRFLHMSALGTRP---NA--------RSRYHQTKWTAEELVRNSELDWTIFQPSVV 149
                     **************993...33........2479999********************875 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0   2.5e-24   3.8e-21       1     231 [.       4     205 ..       4     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 2.5e-24
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnll 99 
                 ilVtG+tGfiG+ +vk l + gy+v + +r+ ++ +   +   e+ e+dl d s  ++  +  ++davihl  vg + ++ +d   f + ++q+t n++
  CCG93291.1   4 ILVTGGTGFIGKSVVKLLCQLGYKVRVSTRNLKQIKALYELPCEFLEGDLSDLSFARKCSS--GIDAVIHL--VGIIVEQGQD--TFKKVHVQITKNMI 96 
                 8******************************777777766666***********9999888..********..6666654444..56679********* PP

                 HHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT.S-TTSTTSHHHHHHHHHHTTS CS
   Epimerase 100 eaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr.ngegevsrvipalirkilegk 197
                 +a++++gvkr+l++s     G   +            + +s Y  +K ++e+lv++     +l+ +i+ ++ ++G + +++++  ++++   + +l   
  CCG93291.1  97 QASKENGVKRFLHMSA---LG---T----------RPNARSRYHQTKWTAEELVRNS----ELDWTIFQPSVVFGIGdDFTKRLYKMLFFPNNPLL--- 172
                 ***************9...33...2..........34789***************86....6778************6666666666663333333... PP

                 SSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT CS
   Epimerase 198 qevtllgdgtalRdflyveDvaeaillvlehvda 231
                   + l++ g+++ + ++ve vaea+++++ ++++
  CCG93291.1 173 -LFPLIDGGKSKLQPIFVENVAEAFVRAIPNPNT 205
                 .478999**********************99776 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   2.5e-23   3.8e-20       1     218 [.       4     224 ..       4     228 .. 0.85

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 2.5e-23
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG.........S-HHHHHHHHHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy.........skeiedgkklvdAak 90 
                 Ilv+G+TG +Gksvv+ l + g+kvr+ +R++k  ++k+l e + e+++gdl d +  ++  +g d+v+  +g+          + ++++ k++++A k
  CCG93291.1   4 ILVTGGTGFIGKSVVKLLCQLGYKVRVSTRNLK--QIKALYELPCEFLEGDLSDLSFARKCSSGIDAVIHLVGIIveqgqdtfkKVHVQITKNMIQASK 100
                 9******************************97..6999**********************************88999*****99************** PP

                 HHS-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG...-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHH CS
        NmrA  91 eaGvkhfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmen...flsllaqlkvgdtappedkvtllgpgnpkavlldaeeDi 186
                 e Gvk+f+  s      +          +++K + ee vr++ +  t++ + +  +    f++ l+++ +   +p    + l   g++k  ++  +e++
  CCG93291.1 101 ENGVKRFLHMSALGTRPNA-----RSRYHQTKWTAEELVRNSELDWTIFQPSVVFGIgddFTKRLYKMLFFPNNPL-LLFPLIDGGKSKLQPI-FVENV 192
                 ********86666555333.....45789******************99987655541115666666444333333.3666777778888888.999** PP

                 HHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHH CS
        NmrA 187 Gafvikilkdprklkgkriklagntlsgneiv 218
                 +++ + ++ +p++++  +     +++s++ei+
  CCG93291.1 193 AEAFVRAIPNPNTFHKTYTLAGPEVYSLKEIL 224
                 **************888887778899999986 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.3   3.2e-17   4.8e-14       1     117 [.       5     113 ..       5     118 .. 0.88
   2 !   13.8   0.0   1.4e-05     0.021     143     229 ..     120     200 ..     113     219 .. 0.77

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 3.2e-17
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrnv 99 
                 +vtGg+GF+G+++vk L +l+   +vrv   + ++ +   l ++  + ++egD+ d +  ++   g+d+vihl +++  +g   +d++ kv v+ T+n+
  CCG93291.1   5 LVTGGTGFIGKSVVKLLCQLGY--KVRVSTRNLKQIK--ALYELPCE-FLEGDLSDLSFARKCSSGIDAVIHLVGIIVEQG---QDTFKKVHVQITKNM 95 
                 69*******************5..8888754444443..66777777.*************************99998888...67777********** PP

   3Beta_HSD 100 leacvkagvrvlvYtSsa 117
                 ++a +++gv++++++S++
  CCG93291.1  96 IQASKENGVKRFLHMSAL 113
                 **************9986 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.4e-05
   3Beta_HSD 143 qdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkllvpllkqla..klglalfkigd.eevlsdrvYvgNvawahilAa 229
                  + y ++K  aE+lv ++          l      p++++G gd+++++l+k l   ++ l lf + d  +++ ++++v+Nva a + A 
  CCG93291.1 120 RSRYHQTKWTAEELVRNSE---------LDWTIFQPSVVFGIGDDFTKRLYKMLFfpNNPLLLFPLIDgGKSKLQPIFVENVAEAFVRAI 200
                 5678899999999987554.........4456789*****************9873245555665554268889************9886 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1   1.3e-11     2e-08       1     128 [.       5     111 ..       5     113 .. 0.82
   2 ?   -1.7   0.0         1   1.5e+03     148     168 ..     118     138 ..     114     145 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.3e-11
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG++GfiG  +++lL++ gy+v +     s+ n+++i++l++ p        ++ +gDl+D s  ++  + +  d+v++L +       +e+ +
     CCG93291.1   5 LVTGGTGFIGKSVVKLLCQLGYKVRV-----STRNLKQIKALYELP-------CEFLEGDLSDLSFARKCSSGI--DAVIHLVGI-----IVEQGQ 81 
                    9**********************955.....7778999****9866.......58**********999998776..9*****654.....444444 PP

                    .HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEE CS
  GDP_Man_Dehyd  97 .ytaevnvlGtlrLLeairalglekkvrfyqaS 128
                     ++ +v v  t ++++a ++ g++   rf+++S
     CCG93291.1  82 dTFKKVHVQITKNMIQASKENGVK---RFLHMS 111
                    045567888899999999998875...898888 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
                    ---SHHHHHHHHHHHHHHHHH CS
  GDP_Man_Dehyd 148 yPrsPYaaaKlyadwivvnyr 168
                    ++rs Y  +K +a+ +v+n +
     CCG93291.1 118 NARSRYHQTKWTAEELVRNSE 138
                    7899*************9965 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.2   9.1e-05      0.14       1      48 [.       6      51 ..       6      61 .. 0.73
   2 !   18.9   0.0   4.4e-07   0.00065     159     208 ..     106     151 ..      56     175 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.1e-05
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekk 48
                   +TG+TGF+Gk +++ L +     k+ +  R+ ++ +a+  l  e+ + 
     CCG93291.1  6 VTGGTGFIGKSVVKLLCQLGY--KVRVSTRNLKQIKALYELPCEFLEG 51
                   7**********9987766655..8888888877777766666555555 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 4.4e-07
                    .HHH--EEEETTTCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE- CS
  NAD_binding_4 159 ekldederaklkglpntYeqsKalaEklvrearrrsglpvvivRpsiitg 208
                      l   ++ +  +    Y q+K+ aE+lvr+      l ++i+ ps++ g
     CCG93291.1 106 RFLHMSALGTRPNARSRYHQTKWTAEELVRNSE----LDWTIFQPSVVFG 151
                    34444555566666779*************988....889********87 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.4e-07   0.00021       2     167 ..       3     164 ..       1     240 [. 0.81

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.4e-07
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre...............eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaeav 82 
                    +ilvtG++G +G+ ++k+l + g++v   tr+               e dl+d + ++++ +    d+v+++        +E+ ++   +v ++ +
     CCG93291.1   3 TILVTGGTGFIGKSVVKLLCQLGYKVRVSTRNlkqikalyelpceflEGDLSDLSFARKCSSG--IDAVIHLVGI----IVEQGQDTFKKVHVQIT 92 
                    59************************9999999999999999999999999999888888777..6778888654....6899************* PP

                    HHHHHHHHHCT-E.EEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHHH-SSEEEEEE-SEESSSSS-HHHHHHHHH CS
  RmlD_sub_bind  83 ealAeaaaavgal.LihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavlaagkkalivRtswvygekgknfvktmlrla 167
                    +++ +a ++ g++ ++h+S      G+         +++ ++ Y +tK+  E+ v+++  +++i+  s+v+g  g +f k++ +++
     CCG93291.1  93 KNMIQASKENGVKrFLHMSAL----GT---------RPNARSRYHQTKWTAEELVRNSELDWTIFQPSVVFGI-GDDFTKRLYKML 164
                    ***********95599**974....55.........5677999*****************************8.999*99998876 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   7.4e-08   0.00011       2      82 ..       3      77 ..       2     115 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7.4e-08
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEE CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLv 82
                ++lvtG+++ IG+ ++k l + G+kv v  r+ +++ +++ el        ++++D++d + +++  + + + +  + ++v
  CCG93291.1  3 TILVTGGTGFIGKSVVKLLCQLGYKVRVSTRNLKQI-KALYELP-----CEFLEGDLSDLSFARKCSSGIDAVIHLVGIIV 77
                79**************************99998888.5555555.....6799*****99999988888766555555554 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.5   2.1e-05     0.031       1     128 [.       4     112 ..       4     142 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      +lvtG++G iG+++v+ +++    k+++  r+ +++ ++  el      +        + gd+ d +  +k+ +  ++d+v+h   +    +ve
       CCG93291.1   4 ILVTGGTGFIGKSVVKLLCQLGY-KVRVSTRNLKQIKALY-EL----PCE-------FLEGDLSDLSFARKCSS--GIDAVIHLVGI----IVE 78 
                      89*************99888876.5666555433333333.23....222.......23499999999888888..99*****9876....789 PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliSt 128
                      +      k  v  t+n+i+a++e+gvk+++ +S+
       CCG93291.1  79 QGQDTFKKVHVQITKNMIQASKENGVKRFLHMSA 112
                      9999999999999****************99996 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   6.2e-05     0.092       1      80 [.       4      76 ..       4     103 .. 0.87
   2 ?   -2.2   0.0       3.1   4.6e+03      11      32 ..     127     146 ..     124     148 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.2e-05
                     EEEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS.SEEEE-SSGG CS
  Sacchrp_dh_NADP  1 vliiGa.GsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg.dlvvnlsppi 80
                     +l+ G+ G++G++v++ll + + +  ++ v +r++++ +al     +  +e+ + d ++ +   a+ +++g d+v++l++ i
       CCG93291.1  4 ILVTGGtGFIGKSVVKLLCQLG-Y--KVRVSTRNLKQIKAL----YELPCEFLEGDLSDLSF--ARKCSSGiDAVIHLVGII 76
                     6888888*************97.6..8**********8777....6899999**99999997..555777779999999876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.1
                      HHHHHHHHCTCCT-GEEEEEES CS
  Sacchrp_dh_NADP  11 qavaellarhfdvdaeitvadr 32 
                      + +ae+l+r++++  ++t+  +
       CCG93291.1 127 KWTAEELVRNSEL--DWTIFQP 146
                      56899******99..8999776 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   5.6e-05     0.084       1      26 [.       2      27 ..       2     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.6e-05
                SEEEEETTTSHHHHHHHHHHHHHHS- CS
          KR  1 gtylitGGlGgLGlelarwlaekgar 26
                +t l+tGG+G +G+++++ l++ g +
  CCG93291.1  2 ATILVTGGTGFIGKSVVKLLCQLGYK 27
                689******************99965 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00018      0.27      43      82 ..       9      48 ..       2      56 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
                  S-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEE CS
  2-Hacid_dh_C 43 GlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvel 82
                  G+G IG++v k+l ++g kv +  r+ k+ ++  el +e+
    CCG93291.1  9 GTGFIGKSVVKLLCQLGYKVRVSTRNLKQIKALYELPCEF 48
                  9*************************99888777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 2606.68
//
Query:       CCG93292.1  [L=378]
Description: Cysteine sulfinate desulfinase/cysteine desulfurase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-78  264.1   0.0    2.2e-78  263.8   0.0    1.0  1  Aminotran_5      Aminotransferase class-V
      1e-05   25.0   0.1    1.6e-05   24.4   0.1    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.072   13.1   0.1       0.19   11.8   0.1    1.7  1  Unstab_antitox   Putative addiction module component


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.8   0.0   3.8e-82   2.2e-78       1     368 [.       4     359 ..       4     361 .. 0.98

  Alignments for each domain:
  == domain 1  score: 263.8 bits;  conditional E-value: 3.8e-82
                  EEEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC.-TTTSEEEEETTS CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslars.lkpgdeivvteae 97 
                  iyld++A+t+  +eV+++++   +   +n+ +s+h+ g +a   +e+arekva+l++++s +eiiftsG++e+ +l+++++ +   k++++iv++++e
   CCG93292.1   4 IYLDYNASTPMHPEVIKEIASG-MTVMGNP-SSIHEEGRQARFLIEKAREKVAQLLGVKS-KEIIFTSGGSESDSLALMGVVYGnKKKKNHIVLSAIE 98 
                  8*********************.669****.****************************9.********************9999************* PP

                  HGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEE CS
  Aminotran_5  98 hhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDfl 195
                  hha l ++  l+ + g k+ ++p  ++g +dl++l ++l+++t lv+i+ ++n+tG++qp+eei++l+k+k+++++ D +q++g+ pid+k l +  +
   CCG93292.1  99 HHAVLETAFSLE-KNGCKISFVPCSKQGIVDLEKLSSHLTDQTLLVSIQSANNETGVCQPIEEIANLCKQKEIFFHSDIVQSIGKVPIDIKGLSL--A 193
                  ***********8.77*******************************************************************************9..* PP

                  EEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCT CS
  Aminotran_5 196 afsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlks 293
                  ++s+hK++gP+G+G+l++++   + +e l +gg+       +e++        ++GT+n  giigl++ale+   +++e+ ++++ +l e+l e l++
   CCG93292.1 194 SLSAHKFYGPKGVGILFIKE--GVPFERLIYGGN-------QEKG-------KRGGTENLLGIIGLAKALEIS-LLEMEEQKERQFRLIERLWESLAD 274
                  ********************..99**********.......8888.......578****************87.9*********************** PP

                  STTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTT....HHHHHHTT.S.......-EEEEE--TTS-HHHH CS
  Aminotran_5 294 lpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhca....qplmkrlale.......gtvRaSlyiynteeev 368
                  lpg++ +g d+++r ++++ + f g++ +d+   Ld +gIa +sG++c     qp+++++a+        ++vR+S++  +teee+
   CCG93292.1 275 LPGIERVG-DPNRRVPNTLLVLFSGLSGHDLLIGLDLAGIAASSGSACMsgtsQPSHVLMAMGyepsqaiSSVRFSIGKFTTEEEI 359
                  ******99.9***************************************9************9**********************9 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   2.7e-09   1.6e-05      35     167 ..      47     175 ..      28     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.7e-09
                      HHHHHHHHHHTT-S..EEEEES-HHHHHHHHHHHH-....-TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S- CS
  Beta_elim_lyase  35 nrLedavaelfgke..aalfvpqGtaAnsillkill....qrgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevg 122
                      ++  ++va+l+g +   ++f+  G  ++s++l+ ++    ++++ ++++   h    et    e +g k   ++ +++G +dlekl +++++  
       CCG93292.1  47 EKAREKVAQLLGVKskEIIFTSGGSESDSLALMGVVygnkKKKNHIVLSAIEHHAVLETAFSLEKNGCKISFVPCSKQGIVDLEKLSSHLTD-- 138
                      5678899999998754789*************766645434555667777789899999999999*********9999************99.. PP

                      TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 123 aheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                          ++ l+s+  +nn   G + +   ++e+a+++k+++i +h D
       CCG93292.1 139 ----QTLLVSIQSANNE-TGVCQP---IEEIANLCKQKEIFFHSD 175
                      ....589*********6.676655...678899**********99 PP

>> Unstab_antitox  Putative addiction module component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.2e-05      0.19       6      21 ..     260     276 ..     257     282 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.2e-05
  Unstab_antitox   6 ERleLaedLwdSLde.e 21 
                      +++L+e+Lw+SL++ +
      CCG93292.1 260 RQFRLIERLWESLADlP 276
                     5789**********954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2450.81
//
Query:       CCG93293.1  [L=290]
Description: Serine acetyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-10   39.2   9.5    3.1e-05   23.5   1.9    3.2  2  Hexapep         Bacterial transferase hexapeptide (six repeat
    3.7e-07   30.5   0.0    6.8e-07   29.6   0.0    1.3  1  SATase_N        Serine acetyltransferase, N-terminal
  ------ inclusion threshold ------
      0.094   12.8   0.0       0.15   12.1   0.0    1.2  1  DNA_pol3_tau_5  DNA polymerase III tau subunit V interacting 
       0.27   11.0   8.0        1.7    8.4   0.6    3.2  3  Hexapep_2       Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   1.9   6.9e-09   3.1e-05       2      35 ..     181     216 ..     180     217 .. 0.94
   2 !   18.4   1.1   2.8e-07    0.0013       1      35 [.     232     267 ..     232     268 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 6.9e-09
                 EEEETTEEE-T..TEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   2 tvIGsnvlIgp..faviggnVkIGdnvkIgagvvig 35 
                 + IGs+ +I++  + vig+ +kIG +vkI +gv++g
  CCG93293.1 181 AEIGSDFFIDHgtGIVIGETCKIGHHVKIYHGVTLG 216
                 78********************************98 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2.8e-07
                 TEEEETTEEE-T.TEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   1 stvIGsnvlIgp.faviggnVkIGdnvkIgagvvig 35 
                 +++I++ v+I p  +++gg ++IG +++Ig +v ++
  CCG93293.1 232 HPTIEDYVTIYPgATILGGETVIGAGSIIGGNVWLT 267
                 579*********55556778************9887 PP

>> SATase_N  Serine acetyltransferase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.5e-10   6.8e-07      33     103 ..      74     144 ..      67     145 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.5e-10
                 HHHHHHHHHHHHH-BSSS-HHHHHHHHHHHHHH-THHHHHHHHHHHHHHHH-TT---THHHHHH-HHHHHH CS
    SATase_N  33 lesaLaflLanklasstlsaeqlrelfeealeadpeiveaaraDlkAvlerDpAcksylepllyfKGFhAl 103
                 + +aL   L + l  s ++ ++ +++++++l++ pei++ +++DlkA++e DpA +s+ e+ll + G  A+
  CCG93293.1  74 VYQALLEELEKSLLFSPIKDQTAESICQRFLSKLPEIRKILATDLKATYEGDPASASIEEVLLAYPGIEAI 144
                 567888889999999999*************************************************9997 PP

>> DNA_pol3_tau_5  DNA polymerase III tau subunit V interacting with alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.4e-05      0.15      63     137 ..      29     107 ..      24     110 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.4e-05
                     TTT--HHHHHHHHHHHHHHHSS--EEEEEE---TSS--HHHHHHHHHHHHHHHHHHHH....HHT-SXXXXXXXXXXXX CS
  DNA_pol3_tau_5  63 khLnsdsaqkeLaeaLsellgkeveleitldddeeqkTPlelrqaiyeekleqAkqsl....eaDkkvqllqqrFdAel 137
                     k L s++a ++L+e L +l    + ++++l++d+  +  le+ +++y+++le+ ++sl    ++D++ + ++qrF  +l
      CCG93293.1  29 KNLPSKKAVSKLTEDLLSLIFPGFYISLSLSQDKVGSFCLEVLKRVYQALLEELEKSLlfspIKDQTAESICQRFLSKL 107
                     67999**************999999999999999999********************9566569***********8887 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   1.3     0.022     1e+02      15      27 ..     192     204 ..     170     210 .. 0.84
   2 ?    5.5   0.4    0.0032        14       2      24 ..     195     219 ..     194     220 .. 0.86
   3 ?    8.4   0.6   0.00038       1.7       4      33 ..     235     267 ..     234     268 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.022
                 EESEEE-TT-EE- CS
   Hexapep_2  15 giGvslGdncvvg 27 
                 g+G+ +G+ c++g
  CCG93293.1 192 GTGIVIGETCKIG 204
                 4589999999987 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0032
                 EEE-TT-EE-TT-EE..SEEE-TT- CS
   Hexapep_2   2 viIGdnCliGanagi..GvslGdnc 24 
                 + IG+ C iG    i  Gv+lG ++
  CCG93293.1 195 IVIGETCKIGHHVKIyhGVTLGARS 219
                 6899999999999999999999765 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00038
                 E-TT-EE-TT-EE..S.EEE-TT-EE-TT-EE- CS
   Hexapep_2   4 IGdnCliGanagi..G.vslGdncvvgaGvvit 33 
                 I+d + i + a+i  G + +G ++++g +v +t
  CCG93293.1 235 IEDYVTIYPGATIlgGeTVIGAGSIIGGNVWLT 267
                 777777778888884489999999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 1803.61
//
Query:       CCG93294.1  [L=295]
Description: Shikimate 5-dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-23   82.8   0.0    2.9e-23   81.9   0.0    1.5  1  Shikimate_dh_N   Shikimate dehydrogenase substrate binding do
    3.7e-14   52.2   0.0    8.3e-14   51.1   0.0    1.6  1  SDH_C            Shikimate 5'-dehydrogenase C-terminal domain
    8.8e-09   35.5   0.2    1.5e-08   34.8   0.2    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    6.3e-07   29.9   0.0    1.2e-06   28.9   0.0    1.5  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    0.00017   21.6   0.0    0.00041   20.3   0.0    1.6  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
     0.0024   17.8   0.1      0.004   17.1   0.1    1.3  1  KR               KR domain
     0.0038   17.5   0.0      0.014   15.6   0.0    1.8  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.014   14.9   0.4      0.025   14.1   0.4    1.3  1  adh_short        short chain dehydrogenase
      0.082   12.2   0.0       0.13   11.6   0.0    1.2  1  ThiF             ThiF family
      0.098   12.5   0.5       0.18   11.7   0.5    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
        0.1   12.0   0.0       0.15   11.4   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas


Domain annotation for each model (and alignments):
>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   1.8e-26   2.9e-23       1      83 []      24     106 ..      24     106 .. 0.99

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 1.8e-26
                     EEESS-TT-SHHHHHHHHHHHCTSSEEEEEEE-SCCTHHHHHHHHHHTTESEEEE-TTSCCHHHGGSSEE-HHHHHHT--SEE CS
  Shikimate_dh_N   1 viGnpikhSlSPaihnaafkalglngsyeafeveedelekaveelralglaGlnvTiPfKeaviplldelseeAkaigAvNti 83 
                     v+G+pi+hSlSP++++aaf++l ++ +y+ +ev+e+ele+av+ l ++g+ G n+T P+K+++++++++l+++A a+g+vNt+
      CCG93294.1  24 VLGKPIAHSLSPIFQKAAFEKLSIDSEYIRIEVSEEELEQAVSLLIKKGFLGWNCTSPLKKRMMEFCNQLDHSAIALGSVNTV 106
                     79********************************************************************************8 PP

>> SDH_C  Shikimate 5'-dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   5.1e-17   8.3e-14       1      30 [.     261     290 ..     261     290 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 5.1e-17
                 HHHHHHHHHHHHHHHHHS----HHHHHHHH CS
       SDH_C   1 GLgMLveQgaeqFelWTGrepPvevMreal 30 
                 GLgML+eQga++F +WTG ++P+e+M++ +
  CCG93294.1 261 GLGMLIEQGALSFSIWTGLPAPIEIMKKSV 290
                 9**************************975 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.2   9.1e-12   1.5e-08       4      80 ..     128     210 ..     125     216 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 9.1e-12
                   HHHHS...TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.E...T-EEEEGCG..HHHHHHT-SEEE CS
  Shikimate_DH   4 kkkle.slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkge...eiealklee..lkellaeadvvi 80 
                   kk+++ ++++  ++++G+G  +e +ak+L+++g++k++ +NRt+ +a +la+ l+++   +i++l+++e  +k++++++++ +
    CCG93294.1 128 KKNFSiDFQKLSITILGTGGAGEAIAKQLATEGAQKLILVNRTYGNALNLANVLESQyktKIQVLTITEanVKKAIEQSELFV 210
                   67788899999****************************************98854311145555555411456666666655 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   7.6e-10   1.2e-06       2      78 ..     140     222 ..     139     235 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 7.6e-10
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.........-EEECECHHHHHHH-SEEEE-S-HHHHHHHH CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.........vkvtavdneeaaeeadvvvlavkpedveevl 78 
                    i i+G+G  gea+a++l+++g  +++++++ +r+   a  la+ l+          ++t+ + ++a+e+++  v a++++++ ++ 
     CCG93294.1 140 ITILGTGGAGEAIAKQLATEG--AQKLILV-NRTYGNALNLANVLEsqyktkiqvLTITEANVKKAIEQSELFVQALPFQYFNSLG 222
                    89*******************..8999977.9999999999999889999****9999999*******************998875 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.5e-07   0.00041       1      94 [.     139     230 ..     139     237 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.5e-07
                     -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSS.BTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC-- CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeineehe.nvkyLpgiklpenlvattdlaealkgadiivlvvPsqalrevlkklkgllk 94 
                     +i++lG+G  G a+Ak la +g +  + v++    +++n ++  +++y    k++     ++++++a++++++ v ++P q++++   +++++l+
      CCG93294.1 139 SITILGTGGAGEAIAKQLATEGAQKLILVNRT-YGNALNLANVlESQYKT--KIQVLTITEANVKKAIEQSELFVQALPFQYFNSLGFHWENILR 230
                     59********************7666665554.44555544431333433..44444567899*******************9988777777665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   2.5e-06     0.004       8      60 ..     144     194 ..     140     212 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.5e-06
                 TTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE--- CS
          KR   8 GlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaa 60 
                 G+Gg G ++a++la +ga++l+l+ R+     ++ +l + le++  ++++v+ +
  CCG93294.1 144 GTGGAGEAIAKQLATEGAQKLILVNRTYG---NALNLANVLESQyKTKIQVLTI 194
                 79*************************42...2333455555544555555543 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0         1   1.6e+03      47      89 ..      49      90 ..       8     106 .. 0.72
   2 !   15.6   0.0   8.8e-06     0.014       1      82 [.     140     218 ..     140     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1
                     TCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHH CS
  Sacchrp_dh_NADP 47 vrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaC 89
                     ++ + i++  e+ e+ ++ l+k+g l  n++ p     ++++C
       CCG93294.1 49 SEYIRIEVSEEELEQAVSLLIKKGFLGWNCTSPL-KKRMMEFC 90
                     4556677777777776666677777777776654.44566666 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 8.8e-06
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH...TTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka...lgvrfeaialdaenyeavLaallkegdlvvnlsppiss 82 
                      + i+G G+ G+a+a+ la ++    +++++ r+  ++ +la+ +    +++++  +++ +n+++    ++++ +l+v ++p  + 
       CCG93294.1 140 ITILGTGGAGEAIAKQLATEGAQ--KLILVNRTYGNALNLANVLesqYKTKIQVLTITEANVKK----AIEQSELFVQALPFQYF 218
                      679******************98..999999998887666654453366666666666666665....89999999999997655 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   1.5e-05     0.025       8      69 ..     144     204 ..     139     213 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
                 TTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHH CS
   adh_short   8 assGIGraiakelakeGakvvv.vdrseekleevakelkee.gakalaiqvDvtdreevealve 69 
                 +++G G aiak+la+eGa+ ++ v+r+  ++ ++a+ l+++ ++k  +  +++t +++v++++e
  CCG93294.1 144 GTGGAGEAIAKQLATEGAQKLIlVNRTYGNALNLANVLESQyKTK--IQVLTIT-EANVKKAIE 204
                 35688*************999989***999999999999875443..3333444.445555554 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.2e-05      0.13      16      48 ..     135     167 ..     124     170 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.2e-05
                 HHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  16 LrdskvllvGaGglGsellknLalsGvgkltlv 48 
                  ++ ++ ++G Gg G  ++k+La  G +kl lv
  CCG93294.1 135 FQKLSITILGTGGAGEAIAKQLATEGAQKLILV 167
                 567899***********************9987 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.5   0.00011      0.18       2      66 ..     140     205 ..     139     213 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                 EEEE--SCCHHHHHHHHHHTT-E.EEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHC CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagle.Vvlvdiseealekalekieksleklvekgklkeeeveaalar 66 
                 ++++G+G  G+ ia+++a +g +   lv+++   + + ++ +e++++  ++   ++e++v++a+++
  CCG93294.1 140 ITILGTGGAGEAIAKQLATEGAQkLILVNRTYGNALNLANVLESQYKTKIQVLTITEANVKKAIEQ 205
                 89******************985378899999999999999*****************99999876 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.5e-05      0.15      26      70 ..     127     172 ..     103     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.5e-05
                   TCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHH CS
  2-Hacid_dh_C  26 ekallgkelsgktvGiiGlGrIGqavakrlkafgm.kviaydrskk 70 
                    k+  + + ++  + i+G+G  G+a+ak l+  g+ k+i ++r+  
    CCG93294.1 127 VKKNFSIDFQKLSITILGTGGAGEAIAKQLATEGAqKLILVNRTYG 172
                   4566677899999******************999878888888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2171.48
//
Query:       CCG93295.1  [L=451]
Description: Chromosomal replication initiator protein dnaA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-89  299.2   0.3      3e-89  298.6   0.3    1.3  1  Bac_DnaA      Bacterial dnaA  protein
    8.9e-27   92.9   0.9    3.4e-26   91.0   0.2    2.3  2  Bac_DnaA_C    Bacterial dnaA protein helix-turn-helix
    3.9e-10   39.7   0.0    9.3e-10   38.5   0.0    1.6  2  IstB_IS21     IstB-like ATP binding protein
    4.9e-10   39.0   0.0    1.2e-09   37.8   0.0    1.6  1  DnaA_N        DnaA N-terminal domain
      2e-05   25.0   0.5    0.00012   22.6   0.0    2.2  2  AAA           ATPase family associated with various cellular 
    0.00025   21.1   0.9    0.00048   20.2   0.1    1.9  2  AAA_14        AAA domain
    0.00027   20.9   0.1    0.00078   19.4   0.1    1.7  1  ATPase_2      ATPase domain predominantly from Archaea
     0.0004   20.7   3.7       0.95    9.7   0.1    3.3  3  AAA_22        AAA domain
      0.002   17.1   0.0      0.016   14.1   0.0    2.0  2  AFG1_ATPase   AFG1-like ATPase
      0.002   18.5   0.1     0.0082   16.5   0.1    2.1  1  RNA_helicase  RNA helicase
     0.0048   15.9   0.0     0.0092   14.9   0.0    1.4  1  AAA_10        AAA-like domain
     0.0057   17.0   0.9      0.025   14.9   0.1    2.2  2  Utp12         Dip2/Utp12 Family
  ------ inclusion threshold ------
      0.012   16.1   0.0      0.034   14.5   0.0    1.8  1  AAA_16        AAA ATPase domain
      0.017   15.1   0.0      0.049   13.6   0.0    1.8  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
      0.026   14.3   0.2       0.08   12.7   0.0    2.0  2  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
      0.026   13.4   0.0       0.03   13.3   0.0    1.3  1  Kinesin       Kinesin motor domain
      0.057   12.9   0.0       0.11   12.0   0.0    1.4  1  AAA_7         P-loop containing dynein motor region
       0.13   12.0   0.2       0.31   10.7   0.2    1.6  1  AAA_24        AAA domain
       0.21   11.6   0.6        1.9    8.5   0.1    2.6  3  AAA_5         AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.6   0.3   3.1e-92     3e-89       1     217 [.     112     328 ..     112     330 .. 0.99

  Alignments for each domain:
  == domain 1  score: 298.6 bits;  conditional E-value: 3.1e-92
                 --SS-SGGG----TTTHHHHHHHHHHHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHTT-S CS
    Bac_DnaA   1 LnkrytFetFviGasnrlAlaaalkvaeapgkkynPlfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklrkvD 99 
                 Ln ++ Fe+Fv+G++ ++A aa+++vae p+k+ynPlf+yg+vGlGktHL++aign++l++++   + Y+t+e+F+ne+++a+++ ++ +f++k+r++D
  CCG93295.1 112 LNLKFSFENFVVGPNCEFAAAASKAVAESPAKAYNPLFLYGKVGLGKTHLMQAIGNYILKKNKRILLQYVTSEQFTNEFIEAIQKGNLVQFRKKYRQID 210
                 7889*********************************************************************************************** PP

                 EEEEE-GGGGTT-HHHHHHHHHHHHHHHTTT-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT----TTHHHHHHHH- CS
    Bac_DnaA 100 vLliDDiqflagkektqeelfhtfnalleegkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaeklevpeevlefiaerv 198
                 vLliDDiqflagke++qee+fhtfn l++ +kq+vls D +P++l++le+rl srfe+Gl+++i pp  e+rlailk k+++ ++ + e++lefiaer+
  CCG93295.1 211 VLLIDDIQFLAGKERSQEEFFHTFNCLFDGSKQIVLSGDEAPSALQNLEKRLISRFEWGLTAEILPPGIEVRLAILKNKLKNYSISLEEKILEFIAERI 309
                 *************************************************************************************************** PP

                 -S-HHHHHHHHHHHHHHHH CS
    Bac_DnaA 199 tdnvRelegalnrlkayas 217
                 ++nvR+legalnrl ay s
  CCG93295.1 310 KTNVRQLEGALNRLCAYIS 328
                 ***************9976 PP

>> Bac_DnaA_C  Bacterial dnaA protein helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.9   1.8e+03       2      21 ..     299     318 ..     299     337 .. 0.83
   2 !   91.0   0.2   3.6e-29   3.4e-26       1      69 []     358     426 ..     358     426 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.9
                 .HHHHTHHHHTT--HHHHHS CS
  Bac_DnaA_C   2 ekIieaVaeyfgvsvedlks 21 
                 ekI+e +ae  + +v++l +
  CCG93295.1 299 EKILEFIAERIKTNVRQLEG 318
                 68999999999888888876 PP

  == domain 2  score: 91.0 bits;  conditional E-value: 3.6e-29
                 ..HHHHTHHHHTT--HHHHHS----CSSHHHHHHHHHHHHHTS---HHHHHHHHT-STTHHHHHHHHHH CS
  Bac_DnaA_C   1 iekIieaVaeyfgvsvedlkskkRkkeiveaRqiamylareltdlslpeIGkefggrdHsTVihaikki 69 
                 ie+I+++V+e ++++ +d++sk+R ++i+++R +amylar+lt+ sl++IG+ fggrdH TV+ha ++i
  CCG93295.1 358 IEMIQKMVCEAYDIRYSDMVSKRRISSIAFPRMVAMYLARKLTNFSLSQIGESFGGRDHGTVLHAQRTI 426
                 799**************************************************************9987 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   9.9e-13   9.3e-10      49     141 ..     147     241 ..     131     258 .. 0.88
   2 ?   -3.8   0.0       9.9   9.3e+03      17      39 ..     364     386 ..     359     391 .. 0.78

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 9.9e-13
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvl..fvrvedLveelkrarrdgklaralkrllkvdllilDdlgllpldqaeaellfeviekryerr 141
                  + l G  G GK+hl  a+g    ++++++l  +v+ e++ +e   a ++g+l +  k++ ++d+l++Dd+ +l  ++ ++e++f+  +  ++ +
  CCG93295.1 147 PLFLYGKVGLGKTHLMQAIGNYILKKNKRILlqYVTSEQFTNEFIEAIQKGNLVQFRKKYRQIDVLLIDDIQFLAGKERSQEEFFHTFNCLFDGS 241
                 57899*********************99985559***************************************************9988877644 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 9.9
   IstB_IS21  17 ktledidfraarsldkrkvkeLa 39 
                  + e +d r + +++kr+++++a
  CCG93295.1 364 MVCEAYDIRYSDMVSKRRISSIA 386
                 56788899999999999988775 PP

>> DnaA_N  DnaA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.2e-12   1.2e-09       2      57 ..      10      65 ..       9      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.2e-12
      DnaA_N  2 elWsavlerLkkelgeqsfdtWikplklfalknng.ltlivpneFardwiesnYldr 57
                +lW+ ++++L+k +++++ ++W+ p++l ++ +n+ l+l +p   ++ wie+nYl +
  CCG93295.1 10 SLWNGICLELQKVISREAIEKWFYPIELIGI-ENDiLILKAPDPIYQYWIEENYLPQ 65
                79*****************************.6666******************976 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.2e-07   0.00012       2      84 ..     149     229 ..     148     267 .. 0.66
   2 ?    0.1   0.1       1.1     1e+03      40      74 ..     310     347 ..     285     384 .. 0.64

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.2e-07
                 EEESSTTSSHHHHHHHHHHHH....T.HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS..TSEEEEEETGGGHHHHHTTCCCHHHHH CS
         AAA   2 llyGppGtGKTllakavakel....g.vefleisgsellskyvgesekkirelfkeakeka..kpsilfiDEidalaksrsgseseeeer 84 
                  lyG  G GKT l++a+ + +    + + +  +   +++++++++ +k     f++    +  +  +l+iD+i  la+++     +++e+
  CCG93295.1 149 FLYGKVGLGKTHLMQAIGNYIlkknKrILLQYVTSEQFTNEFIEAIQKGNLVQFRK----KyrQIDVLLIDDIQFLAGKE-----RSQEE 229
                 79******************844322122334444444455555544433333322....133469***********999.....33333 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.1
                 THHHHHHHHHHHHHHHTS...TSEEEEEETGGGHHHHH CS
         AAA  40 gesekkirelfkeakeka...kpsilfiDEidalaksr 74 
                 + + +++++ ++++ +     k  i+ ++E+++l k+ 
  CCG93295.1 310 KTNVRQLEGALNRLCAYIsihKREIVSLEEVESLLKDL 347
                 34444444444443222234346899999999998765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   5.1e-07   0.00048       4     110 ..     147     251 ..     144     268 .. 0.70
   2 ?   -2.3   0.1       4.5   4.2e+03      72      72 ..     333     333 ..     286     372 .. 0.57

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.1e-07
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe...kllelileklkeekktylflDEiqevpewekalkslvdegknldvivtG 99 
                 +l++ G    GKT l++ + +  l k+++il   + +e+++++  ++    +l  +++k+  ++  +l++D iq + + e+   +++ +    ++++ G
  CCG93295.1 147 PLFLYGKVGLGKTHLMQAIGNYILKKNKRILLQYVTSEQFTNEFIEAiqkGNLVQFRKKY--RQIDVLLIDDIQFLAGKERSQEEFFHTF---NCLFDG 240
                 6788888899*****988886666777777777777777755443322223344444443..46789*********88888888888866...688888 PP

      AAA_14 100 Snskllskeia 110
                 S++ +ls + a
  CCG93295.1 241 SKQIVLSGDEA 251
                 88888877655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.5
      AAA_14  72 E 72 
                 E
  CCG93295.1 333 E 333
                 2 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   8.2e-07   0.00078      19     131 ..     144     255 ..     136     269 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 8.2e-07
    ATPase_2  19 pneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekalgiavpkaeleeilkeksklvfkaielllekikkkg 117
                  ++++f+YG  g GKt L++ i +  ++k+k+++  +  +e++++++ e i++ + +++ +k+ +i+v      ++l  k +  ++ +   ++ + +  
  CCG93295.1 144 AYNPLFLYGKVGLGKTHLMQAIGNYILKKNKRILLQYVTSEQFTNEFIEAIQKGNLVQFRKKYRQIDVLLIDDIQFLAGKER-SQEEFFHTFNCLFDGS 241
                 5799***************************999999999999999999988555555555555444333222233332333.3456666666677777 PP

    ATPase_2 118 kkiiiiiDelqkli 131
                 k+i++  De++ + 
  CCG93295.1 242 KQIVLSGDEAPSAL 255
                 77777777777666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0024       2.3       8      28 ..     148     168 ..     143     195 .. 0.78
   2 !    9.7   0.1     0.001      0.95      86     129 ..     202     248 ..     170     252 .. 0.65
   3 ?    1.7   0.2      0.32     3e+02      57     110 ..     298     345 ..     286     365 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0024
      AAA_22   8 lvvtGesGtGKTtllrrlleq 28 
                 l+++G +G GKT+l++ + + 
  CCG93295.1 148 LFLYGKVGLGKTHLMQAIGNY 168
                 789************988764 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.001
      AAA_22  86 lrarav.....ielliiDEaqhlr.seealeeLrsllnl.srkgvqliLvG 129
                 +    +     i +l+iD++q+l  +e+  ee+ + +n+  + + q++L G
  CCG93295.1 202 F----RkkyrqIDVLLIDDIQFLAgKERSQEEFFHTFNClFDGSKQIVLSG 248
                 2....1445579***********8844444444444555544666666666 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.32
      AAA_22  57 lrellralglelkaerlsseellealeqalraravielliiDEaqhlrseeale 110
                  +++l+++ ++ k++  ++e  l++l  +++ +++ e++ ++E++ l     l+
  CCG93295.1 298 EEKILEFIAERIKTNVRQLEGALNRLCAYISIHKR-EIVSLEEVESL-----LK 345
                 56788888888888778888899999999999999.*********98.....33 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.7e-05     0.016      33      82 ..     118     165 ..      91     198 .. 0.81
   2 ?    0.7   0.0      0.21     2e+02     286     335 ..     209     257 ..     172     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
  AFG1_ATPase  33 teelaaqdlarkssalgklfgrkrksvepvrglYlwGgvGrGKtylmdlf 82 
                   e+++  + +++++a  k +++ +   ++ + l+l+G vG GKt+lm+  
   CCG93295.1 118 FENFVVGPNCEFAAAASKAVAESP--AKAYNPLFLYGKVGLGKTHLMQAI 165
                  567778889999999999999776..778999***************865 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.21
  AFG1_ATPase 286 fhtvlledVpvltkakedaarRfiaLvDelYdadvklvvsaevaleelye 335
                  +  +l++d++ l+ +ke  +  f      l+d + ++v+s + a++ l +
   CCG93295.1 209 IDVLLIDDIQFLA-GKERSQEEFFHTFNCLFDGSKQIVLSGDEAPSALQN 257
                  5668999999999.8888899999999*************8888877653 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   8.7e-06    0.0082       1      64 [.     148     223 ..     148     242 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.7e-06
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl...........klkkkdsvys...rnpeddfwdgYtgqevvvidDfgqvkde 64 
                   ++lyG+ g GK++l++ + + +lkk            +   +++++    +++  +f ++Y++ +v++idD+     +
    CCG93295.1 148 LFLYGKVGLGKTHLMQAIGNYILKKNkrillqyvtseQ--FTNEFIEaiqKGNLVQFRKKYRQIDVLLIDDIQFLAGK 223
                   589********************999778888888541..33333322126677788888888888888888765544 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.8e-06    0.0092      10     105 ..     133     230 ..     129     249 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      AAA_10  10 anqevkgsktnasas.liiGdlGnGKSvlakllvlyisllggkaliiDpkkerekfketlpeiakkinvvtLdseeenegvL..dPlvllk.eekeaes 104
                 a+++v  s  +a +  ++ G++G GK  l++ + +yi+  ++++l+   + e  +f +++ e  +k n+v+  ++ ++  vL  d + +l+ +e+ +e+
  CCG93295.1 133 ASKAVAESPAKAYNPlFLYGKVGLGKTHLMQAIGNYILKKNKRILLQYVTSE--QFTNEFIEAIQKGNLVQFRKKYRQIDVLliDDIQFLAgKERSQEE 229
                 6678887777777775889**************************9888888..8888888889999***99988554333225889888855555555 PP

      AAA_10 105 l 105
                 +
  CCG93295.1 230 F 230
                 5 PP

>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   2.7e-05     0.025      18      78 ..     286     345 ..     280     373 .. 0.82
   2 ?   -0.2   0.1       1.3   1.2e+03      62      89 ..     416     448 ..     404     451 .] 0.67

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.7e-05
                 HHHHHHCS-CTCHHHHHHHHHHHH.HTTTTHHHHHHHHHHHHHHHHHHHHHSH.HHHHHHH CS
       Utp12  18 irltvlrLpssyvlkLLeflaerlaeksphlelllrwlkallrvHgsylvaspsdlvpaLr 78 
                 +++ +++ + s+ +k+Lef+aer++++ ++le  l  l a +++H +++v+  + +++ L+
  CCG93295.1 286 LKNKLKNYSISLEEKILEFIAERIKTNVRQLEGALNRLCAYISIHKREIVSLEE-VESLLK 345
                 56667777788899************************************9986.544443 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.3
                 HHHHHHHS....H..HHHHHHHHHHHHHHHHHH CS
       Utp12  62 Hgsylvas....ps.dlvpaLrslqkslrerlk 89 
                 Hg+ l+a+     + +  p L +l k+++erl 
  CCG93295.1 416 HGTVLHAQrtisEKmAQDPDLMQLIKKITERLT 448
                 666676663433222334478888888888875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.6e-05     0.034      20      83 ..     137     201 ..     128     267 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.6e-05
      AAA_16  20 rsgrp....elvllsGesGvGKsslvrellralekd..ggiflrgkcdqlesaipysa.laqalareellr 83 
                  + +p    + ++l+G  G GK+ l++++ +++ k+  ++++ + + +q++        +++a+ +  l++
  CCG93295.1 137 VAESPakayNPLFLYGKVGLGKTHLMQAIGNYILKKnkRILLQYVTSEQFT------NeFIEAIQKGNLVQ 201
                 44445556699********************99999653444666666662......22888886655554 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.2e-05     0.049       9      43 ..     136     169 ..     126     192 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.2e-05
                 HHHHHHHHCHTEE...EEEEESTTSSHHHHHHHHHHHT CS
        TsaE   9 algkklakalgdv...ilLeGdLGaGKTtlvrglakal 43 
                 a++++ ak    +   ++L+G++G GKT+l++++ + +
  CCG93295.1 136 AVAESPAK----AynpLFLYGKVGLGKTHLMQAIGNYI 169
                 33333333....13449****************98765 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.5e-05      0.08      27      97 ..     139     221 ..     118     260 .. 0.70
   2 ?   -3.3   0.1       7.1   6.7e+03      72     108 ..     340     376 ..     328     379 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.5e-05
      RuvB_N  27 kkreealdhvllyGpPGlGkttlakiiakelgvklk......itsgP....vle..kagdlaalltnleekdvlfideihrls 97 
                 ++  +a + ++lyG  GlGkt l + i + +  k k      +ts       +e  ++g+l+ + ++ ++ dvl+id+i  l+
  CCG93295.1 139 ESPAKAYNPLFLYGKVGLGKTHLMQAIGNYILKKNKrillqyVTSEQftneFIEaiQKGNLVQFRKKYRQIDVLLIDDIQFLA 221
                 45566778899************9988876533322111222344431111444446899*******************9885 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.1
      RuvB_N  72 agdlaalltnleekdvlfideihrlsraveevlysam 108
                    l   l ++++++ + i+ i ++  ++ ++ ys m
  CCG93295.1 340 VESLLKDLISIQPSKTITIEMIQKMVCEAYDIRYSDM 376
                 4455555677788888888888888887777777766 PP

>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.2e-05      0.03      15      96 ..      88     171 ..      76     363 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.2e-05
                 EBCEEEECTCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC.....T CS
     Kinesin  15 eeeveveeekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk.....e 96 
                 ++ v  +++k++ +++++  +++  + kf+F++++   + +       +k + es  + yn  +f YG+ g GKT+ m+       +
  CCG93295.1  88 QKGVIEKSSKQPFQEEKSVIESKGLNLKFSFENFVVGPNCEFAAAA--SKAVAESPAKAYNP-LFLYGKVGLGKTHLMQAIgnyilK 171
                 3333344467888889999999999999***986655444333333..35678888888885.899************976445543 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00012      0.11      25      93 ..     137     201 ..     118     225 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
       AAA_7  25 llelllknkkpvllvGptGtGKtviikdllkkld.kekylsltinfsaqtsanqlqdiiesklekrrkgv 93 
                 + e   k+ +p++l+G++G GKt +++ + + +  k+k + l+   s q + + +  i + +l       
  CCG93295.1 137 VAESPAKAYNPLFLYGKVGLGKTHLMQAIGNYILkKNKRILLQYVTSEQFTNEFIEAIQKGNL-----VQ 201
                 5666678899******************66655515555555555555554444444433333.....33 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00033      0.31       5      75 ..     148     218 ..     145     223 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00033
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel.....aaeladyktlviDtid 75 
                 +++yG+ g GKT+l+  +  +  ++  +k     +++  +  + +++ +++         +++++++++l iD i+
  CCG93295.1 148 LFLYGKVGLGKTHLMQAI-GN-YILKKNKRILLQYVTSEQFTNEFIEAIQK---GnlvqfRKKYRQIDVLLIDDIQ 218
                 579***************.54.45666775554444444433344444433...2444669999999999999886 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0021       1.9       2      74 ..     148     217 ..     147     250 .. 0.71
   2 ?   -0.7   0.0       1.4   1.3e+03     113     138 .]     233     266 ..     208     266 .. 0.63
   3 ?   -0.1   0.0      0.91   8.6e+02      59      84 ..     325     350 ..     293     400 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0021
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESG CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEv 74 
                 ++L G+ G gK+ l++ +   + +++  + +  ++ t+e+++ +       ++ +++ lv ++r    + ++l++D++
  CCG93295.1 148 LFLYGKVGLGKTHLMQAIGNYIlKKNKRILL--QYVTSEQFTNEFI-----EAIQKGNLV-QFRkkyrQIDVLLIDDI 217
                 89****************9999744444332..4456666666655.....445555555.22224445556666665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.4
                 .........-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5 113 r........frviatanpldrslnelspalrsRf 138
                 +         +++ ++ +++  l++l ++l+sRf
  CCG93295.1 233 TfnclfdgsKQIVLSGDEAPSALQNLEKRLISRF 266
                 2334455556777788888888999999999998 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.91
                 ------G-SEEEEESGGG--HHHHHH CS
       AAA_5  59 lvraaregeilvlDEveraesevlns 84 
                 ++ ++ + ei+ l+Eve + ++ +++
  CCG93295.1 325 AYISIHKREIVSLEEVESLLKDLISI 350
                 33344478889999999766666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 2959.46
//
Query:       CCG93296.1  [L=371]
Description: DNA polymerase sliding clamp subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-27   95.6   0.1    2.7e-22   79.2   0.1    3.1  3  DNA_pol3_beta    DNA polymerase III beta subunit, N-terminal 
      1e-23   83.8   0.0      1e-20   74.1   0.0    2.3  2  DNA_pol3_beta_2  DNA polymerase III beta subunit, central dom
    3.9e-18   65.4   0.0      1e-17   64.1   0.0    1.8  2  DNA_pol3_beta_3  DNA polymerase III beta subunit, C-terminal 
  ------ inclusion threshold ------
          1    9.5   3.4       0.37   10.9   0.3    1.9  2  Exonuc_VII_S     Exonuclease VII small subunit


Domain annotation for each model (and alignments):
>> DNA_pol3_beta  DNA polymerase III beta subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.1   5.9e-26   2.7e-22       1     120 [.       1     119 [.       1     120 [. 0.97
   2 !    4.4   0.0    0.0086        38      25      86 ..     149     209 ..     128     241 .. 0.80
   3 !    8.4   0.0   0.00049       2.2       4      94 ..     256     345 ..     254     360 .. 0.83

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 5.9e-26
                    -EEEEEHHHHHHHHHHHHTTSSSTTSSGGGGEEEEEEET.TEEEEEEE-SSEEEEEEEESEEEEE-EEEEEEHHHHHHHHHHSSTTSEEEEEEETT CS
  DNA_pol3_beta   1 mkftiereellkelekvakvisnRntlpiLsgvllevkd.sqlsltgtDleisiestisaeseeeegkvlvparllldivkaLpndkkvkisvneq 95 
                    mkf++ +++++++l+ ++++i+ R tlpiLs + l+++  + + l +tDl+ s++ +++a++  e+g +++par ll iv++L+  ++ +++++ +
     CCG93296.1   1 MKFCVDKNQFIESLSLIQSIINPRSTLPILSHLHLTAQIpDLVVLFATDLQTSLKLSLKATVT-ESGITTLPARRLLTIVRELES-NELTLETDSN 94 
                    9*************************************8678899******************.99*******************.*********9 PP

                    EEEEEEETTEEEEEE-BEGGGS--- CS
  DNA_pol3_beta  96 klliiksgssrfslstlsaeeypnl 120
                    +l+   sg+  f++++l+ ++yp+ 
     CCG93296.1  95 HLTTLSSGNCLFKINGLPEDDYPKF 119
                    999999*****************75 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0086
                    TSSGGGGEEEEEEETTEEEEEEE-SSEEEEEEEESEEEEE-EEEEEEHHHHHHHHHHSSTTS CS
  DNA_pol3_beta  25 ntlpiLsgvllevkdsqlsltgtDleisiestisaeseeeegkvlvparllldivkaLpndk 86 
                    +  p L+g   +vk+ +  + +tD +  + +    e +  e + +vpa+ +l+i + ++n +
     CCG93296.1 149 ESRPALNGAWFSVKSGRFEVAATDGKRLAYVFDDFETSGLEAEGIVPAKAILEISRIIEN-S 209
                    45799999999*************9988888888888877888899*********99987.3 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00049
                    EEEHHHHHHHHHHHHTTSSSTT.SSGGGGEEEEEEETTEEEEEEE-SSEEEEEEEESEEE..EE-EEEEEEHHHHHHHHHHSSTTSEEEEEEET CS
  DNA_pol3_beta   4 tiereellkelekvakvisnRn.tlpiLsgvllevkdsqlsltgtDleisiestisaese..eeegkvlvparllldivkaLpndkkvkisvne 94 
                    +i r+ +++++  v+++ s+ +  +pi+ +    v +++l+l+    ei   +++ + +e   e+++v  ++ +lld +k++++ ++v +++ +
     CCG93296.1 256 VIDRNTFMHSIRRVSSIASSGTgSIPIFLNF---VGNQELILSCQAPEIGQAKETLIIKEfkGEPFSVPFNPFYLLDPLKEMEK-EDVILEFVN 345
                    799************9998865379999886...78899*****9999987666554444448*********************.999999876 PP

>> DNA_pol3_beta_2  DNA polymerase III beta subunit, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0009         4       2     105 ..       5     106 ..       4     118 .. 0.75
   2 !   74.1   0.0   2.2e-24     1e-20       2     116 .]     130     242 ..     129     242 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0009
                      EEHHHHHHHHHCCGGGS-SSTTSGGGGEEEEEEE.CCEEEEEEE-SSEEEEEEEEEEECTTCEEEEEEEHHHHHHHHHHHTSSSSEEEEEEESS CS
  DNA_pol3_beta_2   2 lkqkelkelieqvafaasedetrpvLtGvrleie.edklllaaTdghRlavrkleleeeeedeasvivPaktlaelaklledneeqvklalseg 94 
                      +++++++e ++ ++  ++   t+p+L  ++l  +  d ++l aTd       kl+l+++  ++   ++Pa+ l+ + + le+  ++++l  +++
       CCG93296.1   5 VDKNQFIESLSLIQSIINPRSTLPILSHLHLTAQiPDLVVLFATDLQ--TSLKLSLKATVTESGITTLPARRLLTIVRELES--NELTLETDSN 94 
                      57788999999999999999***********99846789999***64..334555555555566789**************9..7788887765 PP

                      EE.EEEETTEEE CS
  DNA_pol3_beta_2  95 ki.rfevgnvrl 105
                      ++ +++ gn  +
       CCG93296.1  95 HLtTLSSGNCLF 106
                      541455666555 PP

  == domain 2  score: 74.1 bits;  conditional E-value: 2.2e-24
                      EEHHHHHHHHHCCGGGS-SSTTSGGGGEEEEEEECCEEEEEEE-SSEEEEEEEEEEECTTCEEEEEEEHHHHHHHHHHHTSSSSEEEEEEESSE CS
  DNA_pol3_beta_2   2 lkqkelkelieqvafaasedetrpvLtGvrleieedklllaaTdghRlavrkleleeeeedeasvivPaktlaelaklledneeqvklalsegk 95 
                      ++q++l+++++ v  a++ de+rp L+G  ++++  + ++aaTdg Rla +    e++   ea+ ivPak+++e+++++e++++++k++l+ +k
       CCG93296.1 130 MPQSKLRKMLKMVDYAMA-DESRPALNGAWFSVKSGRFEVAATDGKRLAYVFDDFETSGL-EAEGIVPAKAILEISRIIENSDKALKMFLDPNK 221
                      789*************97.89****************************99888887776.699****************************** PP

                      EEEEETTEEEEEE-BSS---B CS
  DNA_pol3_beta_2  96 irfevgnvrltsrlldgkfPd 116
                      i +e +n  ++s+l++gk+P+
       CCG93296.1 222 IFLEYDNILFFSKLIEGKYPN 242
                      ********************7 PP

>> DNA_pol3_beta_3  DNA polymerase III beta subunit, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.5   1.1e+04      26      43 ..      43      60 ..      37      63 .. 0.76
   2 !   64.1   0.0   2.3e-21     1e-17       1     120 [.     244     368 ..     244     369 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.5
                     HHTTSSTSTGEEEEEEET CS
  DNA_pol3_beta_3 26 valladeknrkvrLslee 43
                     v l a + +++++Lsl++
       CCG93296.1 43 VVLFATDLQTSLKLSLKA 60
                     667788888888888875 PP

  == domain 2  score: 64.1 bits;  conditional E-value: 2.3e-21
                      CCCS-SS-SEEEEEEHHHHHHHHHHHHTTSS..TSTGEEEEEEE.TTEEEEEEEETTSEEEEE.EEEEBEESS-EEEEEEHHHHHHHHHHH-SS CS
  DNA_pol3_beta_3   1 krllPkefkkkvtvdlkelkealkRvallad..eknrkvrLsle.egqlklsaensevgeaeE.evdvnyeGeeleiafNvsYlldalkalete 90 
                      k+++Pk  ++k+++d++ +++ + Rv+ +a     +  + L++  +++l ls +++e+g+a+E  +  +++Ge++++ fN+ Ylld lk +e+e
       CCG93296.1 244 KQVIPKATTEKAVIDRNTFMHSIRRVSSIASsgTGSIPIFLNFVgNQELILSCQAPEIGQAKEtLIIKEFKGEPFSVPFNPFYLLDPLKEMEKE 337
                      69*************************99994334455666665799****************54567788*********************** PP

                      EEEEEESSTT...S-EEEEETTEESEEEEE--B CS
  DNA_pol3_beta_3  91 evelqltdst...kpvllsevedesvkyvilpm 120
                      +v l++ +++    p+l+ e    ++ yv++p+
       CCG93296.1 338 DVILEFVNPStkgNPCLITEG--TNFVYVLMPI 368
                      ******987533358888765..5678899987 PP

>> Exonuc_VII_S  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   8.2e-05      0.37       7      23 ..      74      90 ..      72      91 .. 0.91
   2 ?   -3.6   0.2       2.7   1.2e+04      13      23 ..     332     342 ..     331     342 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.2e-05
  Exonuc_VII_S  7 eLeeIvekLEsgelsLe 23
                  +L +Iv++LEs+el+Le
    CCG93296.1 74 RLLTIVRELESNELTLE 90
                  7889************9 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.7
  Exonuc_VII_S  13 ekLEsgelsLe 23 
                   +++E++++ Le
    CCG93296.1 332 KEMEKEDVILE 342
                   68999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2818.27
//
Query:       CCG93297.1  [L=128]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.01   15.5   0.1      0.017   14.8   0.1    1.3  1  DnaT      DnaT DNA-binding domain


Domain annotation for each model (and alignments):
>> DnaT  DnaT DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   9.3e-07     0.017      24      43 ..      12      31 ..       3      37 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.3e-07
        DnaT 24 dedftedelaeFilYWrerg 43
                 ++ft++e+ +F+++W+er 
  CCG93297.1 12 LHPFTKEEIEKFVAHWLERF 31
                578**************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 890.16
//
Query:       CCG93298.1  [L=183]
Description: Lipoprotein signal peptidase (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-32  111.2  11.4    6.2e-32  110.8  11.4    1.1  1  Peptidase_A8  Signal peptidase (SPase) II


Domain annotation for each model (and alignments):
>> Peptidase_A8  Signal peptidase (SPase) II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8  11.4   3.4e-36   6.2e-32       4     139 ..      37     171 ..      35     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 3.4e-36
  Peptidase_A8   4 lllllDqltKllvvenlkte..svevipgffkltyveNrgaafgllesgakrk.llillslvvilllivlllkkkkkskllrialalilgGalGNli 97 
                   l+lllD +tK +v+ ++  +  +  +ipgf++l +veN+g+afgl++++++ +  ++ll   +++++i++  k   ++ + ++  +li++GalGN i
    CCG93298.1  37 LFLLLDWITKSWVS-SFFINsfNKPLIPGFLDLVFVENTGIAFGLFAGNNGFWeYFTLLL--ILIGFIFFRKKI-FTNIFHMFVSSLIFAGALGNWI 129
                   789**********4.44444357779*******************996555554555544..333444444333.346788889************* PP

  Peptidase_A8  98 DrllygkVvDfldfsleliefpvFNvADvaitvGvilliial 139
                   Dr+++g+V+Df+d+++  +++p+FN+AD+++t+G++++++++
    CCG93298.1 130 DRVIHGHVIDFIDVHILEYHWPAFNLADAYLTIGFVCILLES 171
                   *************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1298.34
//
Query:       CCG93299.1  [L=308]
Description: Quinolinate synthase A [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     4e-115  384.1   1.3   4.6e-115  383.9   1.3    1.0  1  NadA      Quinolinate synthetase A protein


Domain annotation for each model (and alignments):
>> NadA  Quinolinate synthetase A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.9   1.3  2.6e-119  4.6e-115       2     299 .]       9     305 ..       8     305 .. 0.97

  Alignments for each domain:
  == domain 1  score: 383.9 bits;  conditional E-value: 2.6e-119
                 HHHHHHHHHTEEEEEETTS-HHHHHH-SEEE-HHHHHHHCCC-SSSEEEEES-HHHHHHHHHHSTTSEEE-SSTT---HHHCT--HHHHHHHHHHSTTS CS
        NadA   2 eikelkkeknavilaHnYqedeiqeiadfvGDSleLarkaaeteaevivfcGVhFMaetakiLspekkvllpdleagCsladmitaeeveelkeelpda 100
                 ++ +lkkek+a+ilaHnYq +eiqe+ad++GDSl L+ ka++t+ae ivfcGVhFMaetakiL+p++kv+lpdleagCsl+d+++ ee+ e+k + p++
  CCG93299.1   9 AVLKLKKEKRAIILAHNYQLPEIQEVADYIGDSLGLSFKARDTTAERIVFCGVHFMAETAKILNPNRKVILPDLEAGCSLSDTCSYEELLEYKIKNPEV 107
                 5789*********************************************************************************************** PP

                 -EEEESSS-HHHHTT-SEEE-TTTHHHHHHHSS.-SEEEEES-HHHHHHHHHHH.SEEEEESSSS-GCGGG--CHHHHHHHHCSTT-EEEE-TTS-HHH CS
        NadA 101 avvtYvNssaevKalsdivcTSsnavkvvealk.ekkilflPDqnLgryvakklgekkiilwkgaCsvHeefkaeeveelkeehpdakvlvHPEckeev 198
                  vv+YvN+sa+vK+lsd++cTS+na k++e+++ +kkilf+PDqnLg++v++k+g+ ++ lw+g+C+vH ef+ +++ +lk+++p+a +++HPEc+++v
  CCG93299.1 108 FVVAYVNTSAAVKSLSDCICTSANAIKIIEKVPlDKKILFVPDQNLGEWVQSKTGR-QMDLWPGECYVHVEFTHQSLLNLKKNYPNAPIVAHPECERAV 205
                 ********************************88********************99.6***************************************** PP

                 HHCSSEE--HHHHCCCCGTTSSSCEEEES-THHHHHHHHH-TTSEEE.....ECS.SSSSTTGGG--HHHHHHHHHHT-S.B----HHHHHHHHHHHHH CS
        NadA 199 veaadvvgSTsqiikavkeseakefiigTelglverlkkeapekefialsaeaae.eavCetMkkitleklleaLeeleeeeikvdeevaekAkkaler 296
                   +ad v+ST+q+i+++++++a++fii+Te+g+++rlkke pek+fi +s+   +   +C+ Mkkit++k++++Le+ ++ ei v+ee+++kA  ++++
  CCG93299.1 206 RMLADEVCSTEQMIRYCRNHPANTFIIVTEVGMTTRLKKEIPEKDFIPASTP-RCaCSQCKFMKKITIDKVISSLERDDP-EIDVPEEIRKKAFIPIQQ 302
                 ***********************************************77654.443667*******************99.****************** PP

                 HHH CS
        NadA 297 mle 299
                 mle
  CCG93299.1 303 MLE 305
                 *96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2313.16
//
Query:       CCG93300.1  [L=202]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-62  208.2   0.0      1e-61  208.0   0.0    1.0  1  PIN_5     PINc domain ribonuclease
  ------ inclusion threshold ------
       0.15   12.6   0.1        1.5    9.3   0.1    2.1  1  PIN_12    PIN domain


Domain annotation for each model (and alignments):
>> PIN_5  PINc domain ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.0   0.0   1.1e-65     1e-61       1     205 [.       3     192 ..       3     193 .. 0.98

  Alignments for each domain:
  == domain 1  score: 208.0 bits;  conditional E-value: 1.1e-65
       PIN_5   1 rfvlDTsaltdpevreklgeeeleeavkklldliaearlklgiscyippsvykElkeflkreeveeeviakldtwlvkkspdryevkipaeilyeyvee 99 
                 +fvlDTs++t+p++++++g++++ ++++++l+l+++a++++    ++p+s y+Elk +  +  ++++    ++ +++++sp+++++ ip  +ly+++ee
  CCG93300.1   3 KFVLDTSVFTNPDITQQFGDDDT-TVFSNFLSLATKADAQF----FMPSSAYQELKIMKGTVFFSSD----FELIVHIRSPRKFNLLIPGFVLYDFIEE 92 
                 7*********************9.9************9999....******************9999....**************************** PP

       PIN_5 100 vrerinkGlrvaEeavreaaeeseklekeeeeeevgelikklRekYrealRkGilDsaeDldvllLAkELdaavvssDeGikkwaeklGlrlveakkfp 198
                 +r+ri++Glr+aEe+++ a  +        +   +++l+++lR++YrealR+GilDs+eD+dv+lLA+EL++ +v++DeG+kkwa+k+G+++++ak ++
  CCG93300.1  93 IRKRIDHGLRIAEEHLKLAGPNGG------NPIPFDQLVNRLRNRYREALRQGILDSREDVDVILLAYELEGILVTADEGMKKWADKMGIEVMNAKFLR 185
                 ********************9998......4689***************************************************************** PP

       PIN_5 199 kvlkeyl 205
                 ++lk+++
  CCG93300.1 186 DCLKSLI 192
                 ****997 PP

>> PIN_12  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00016       1.5       2      46 ..       5      53 ..       5     150 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00016
      PIN_12  2 fiDTnifld....effrlseeealkklleliesgkiklivpdivldEfl 46
                ++DT++f +    + f ++  ++++++l l  + +++ ++p+  ++E++
  CCG93300.1  5 VLDTSVFTNpditQQFGDDDTTVFSNFLSLATKADAQFFMPSSAYQELK 53
                69******88888666666777***********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1515.89
//
Query:       CCG93301.1  [L=366]
Description: ATP-dependent DNA ligase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-17   62.1   0.1    7.6e-17   61.5   0.1    1.3  1  Lig_C           Ligase Pab1020 C-terminal region
    2.5e-14   53.9   0.0    4.3e-14   53.1   0.0    1.4  1  RNA_ligase      RNA ligase
    0.00082   19.1   0.0       0.32   10.6   0.0    2.2  2  DNA_ligase_A_M  ATP dependent DNA ligase domain


Domain annotation for each model (and alignments):
>> Lig_C  Ligase Pab1020 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.1   1.3e-20   7.6e-17       6     124 ..     242     361 ..     237     362 .. 0.91

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 1.3e-20
                 CCGS-STSCHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEEEE-SSHHHHHHHHHHHHCT...T--EEEEEEE..TT CS
       Lig_C   6 lfelgrdFlfsRviReafqavefeeseeelrerakeLGesiLepmvetikkvkeeekvkeefrvrfkdeenieellehLrrl...gvkaeveekekedg 101
                 + ++ +++++ R++R  + + e+   ee+  +  ++LG+++  ++ e +k+v+e  + ++ fr+rf++++n+e ++ehL+++   + ++++++  +e+ 
  CCG93301.1 242 ILDVSPNYFIDRILRYVLFLTELGLIEEN--NWEEKLGKAFVCGIKEVLKNVREHGRSSRFFRCRFRESKNAEYFIEHLKHIpghQEHVIIKKLYQENS 338
                 57999******************999999..6889*********************************************96332566778888899** PP

                 EEEEE..EE-HHHHHHHHHHHTT CS
       Lig_C 102 elvvkfkkiaqsttdkikslLeG 124
                 ++v++f+k + st+d +++ L+G
  CCG93301.1 339 YWVLEFEKTFPSTSDTLRNWLSG 361
                 *********************99 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   7.3e-18   4.3e-14       2     160 ..      70     225 ..      69     226 .. 0.71

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 7.3e-18
                 EEEEEEE-SSEEEEEEEETT.EEEEETTCEBCTTTHHHHHHTHHHHHHHHHHHHH..ECCEEEEEEEES.SS..TTSS........EEEEEEEEEEECT CS
  RNA_ligase   2 evvvtEKlDGtnfriylvke.vgvasRsqilpfgeekfkefkrwaaalrkklkeklaneelilyGElighsikygglpk.......efyvFdifdirdk 92 
                  ++ +EK+DG+n+ri+  ++ +++a+R++++       ++f++       ++   +++++l+l+GE+ g+  +y + p        +++ Fdi+  +  
  CCG93301.1  70 SFWMEEKVDGYNVRIFHYQGqIYCATRGGFI-------CPFSTDRIVDLLNVDIFIDHPNLVLCGEITGPGSPYIEGPTplvsedvKLFIFDIAKGS-- 159
                 589*************99666**********.......4455555555555555566888*********666555534456777789*******666.. PP

                 TBECE--HHHHHHHHHCCTB..EEEEE.SS..HHHHHCCC....H.HHHTC--EEEEEESSSSBETTEBSEEEE CS
  RNA_ligase  93 eeqrylspdevealakglgtvpvlyegkfl..aaeellel...ll.skgnkrEGlVikpeselyknkgraifKv 160
                  + ++l+ ++ ++l  ++   p ++ ++    + ++l+++   ll  +++ rEG+++k e+++      +++K+
  CCG93301.1 160 -TMEFLPERQKHELISRY-RLPSVKNFDLFenQPKDLRQIkkiLLsLHNEYREGVIFK-EEPF-----GRRAKY 225
                 .**********7777767.4444444443344555555556542356788********.4443.....666666 PP

>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   5.3e-05      0.32       7      79 ..      56     128 ..      52     131 .. 0.77
   2 !    6.2   0.0    0.0012       7.3     114     186 ..     147     216 ..     141     232 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.3e-05
                     ESCHHHHHHHTTTSEEEEEEEESSEEEEEEEETTEEEEEETTS-B-GGGCHHHHHHHHHHBSTTESEEEEEEE CS
  DNA_ligase_A_M   7 lksiekalkkleekafivEiKyDGeRaqvhkegdkvklfSRrlkditaakpelvkalkeafkkdeksvilDGE 79 
                     ++s+e+ l++  +++f++E+K+DG+ +++  ++++++  +R +   + + +++v  l+  ++ d  +++l GE
      CCG93301.1  56 INSLESGLREQFSGSFWMEEKVDGYNVRIFHYQGQIYCATRGGFICPFSTDRIVDLLNVDIFIDHPNLVLCGE 128
                     6788999999999**************************9987666666666666555555555556666665 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0012
                     EEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTEEE--EEEESSHHHHHHHHHHHHHTTECEEEEEE CS
  DNA_ligase_A_M 114 elclfvFDiLyldgesltdeplkeRrklLeeilkesedrvelaeslevkdveeleelleeaiseglEGlvvKn 186
                      + lf+FDi    g ++  +p +++ +l++++  +s ++++l e++  kd+++++++l    +e  EG++ K+
      CCG93301.1 147 DVKLFIFDIA--KGSTMEFLPERQKHELISRYRLPSVKNFDLFENQ-PKDLRQIKKILLSLHNEYREGVIFKE 216
                     6789999999..777777788899999*****99*********997.5899*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2534.22
//
Query:       CCG93302.1  [L=429]
Description: UDP-glucose 6-dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-68  230.6   1.4    1.6e-68  230.0   1.4    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
    1.5e-35  121.3   0.0    3.3e-35  120.2   0.0    1.6  1  UDPG_MGDP_dh    UDP-glucose/GDP-mannose dehydrogenase family,
    3.1e-31  107.9   0.1    5.4e-29  100.7   0.0    2.6  2  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,
    1.4e-06   28.6   0.1    9.4e-05   22.6   0.0    2.6  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    7.8e-06   26.4   4.1       0.88   10.2   0.3    4.1  3  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    1.8e-05   24.5   0.0    0.00048   19.8   0.0    2.5  2  ApbA            Ketopantoate reductase PanE/ApbA
      0.002   18.2   0.1     0.0091   16.0   0.0    2.2  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
     0.0026   18.3   0.1      0.015   15.9   0.0    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
       0.01   15.1   0.1      0.056   12.7   0.0    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
       0.01   15.8   0.1      0.036   14.0   0.0    2.0  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.024   14.5   0.5       0.24   11.2   0.1    2.8  3  Rossmann-like   Rossmann-like domain
      0.038   13.4   0.2        2.7    7.3   0.1    3.1  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase


Domain annotation for each model (and alignments):
>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.0   1.4     1e-71   1.6e-68       1     187 []       1     184 [.       1     184 [. 0.97

  Alignments for each domain:
  == domain 1  score: 230.0 bits;  conditional E-value: 1e-71
                     SEEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B-TTTTCB CS
  UDPG_MGDP_dh_N   1 mkisviGlGYvGlvtaavlaeighevigvDideekvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaVgTPskkkgkaa 95 
                     mkis+iG+GYvGl+t+a++a ighevi++D+d++k+++l +g+ipiyepgLeelv+k+v++g l+ft ++e+ ve++ vifiaV+TP  + + + 
      CCG93302.1   1 MKISIIGSGYVGLTTGACFADIGHEVICIDNDSSKIKSLLAGNIPIYEPGLEELVQKNVKKGTLHFTESIEEGVEKSLVIFIAVPTPPLE-DGSV 94 
                     8*****************************************************************************************.8888 PP

                     -THHHHHHHHHHHHHHHCEEEEEE-S---TTHHHHCHHHHHHHHCSS-TTCEEEEE------TTSHHHHHHS-S-EEEEESSCHHHHHHHHH CS
  UDPG_MGDP_dh_N  96 DlkyvesaarsiaealkkgkvvvvkSTvpvgtaeelvkkileeaskkkgvdfdvvsnPEflregsavkdllnpdrvviGveekkaeaaleel 187
                     D++y+e++ar+ia +lk+++v+v kSTvpv+t e++++ i + +s+  +++fdvvsnPEflreg a++dll+pdrvviG+++++a ++++e+
      CCG93302.1  95 DMTYIEKVARQIAAVLKDYRVIVDKSTVPVKTGEKVYQTIKRYNSH--NSEFDVVSNPEFLREGVAIHDLLHPDRVVIGATSERAIKIMKEV 184
                     **********************************999998888887..57**********************************99999875 PP

>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.0   2.2e-38   3.3e-35       2      93 ..     199     290 ..     198     291 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 2.2e-38
  UDPG_MGDP_dh   2 tAEliKlaaNaflatkIsfiNelanlcealgidveeVieavgldprigpkflkpglGvGGsclpkDvkaLvalaeelgleaelleavrevNe 93 
                   +AEliK a+N+fla+kIs+iN l+++cea g++v+ V+e++gld+rig++flk+g+G+GGsc+pkDv+a++++++elg++++ll++v ++N+
    CCG93302.1 199 SAELIKHASNSFLALKISYINALSRICEAAGANVQMVAEGMGLDHRIGKHFLKAGIGWGGSCFPKDVAAFIKISQELGYDFKLLKEVSQINS 290
                   8******************************************************************************************6 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.029        43      33     103 ..      44     117 ..      35     119 .. 0.75
   2 !  100.7   0.0   3.6e-32   5.4e-29       2     105 .]     314     414 ..     313     414 .. 0.98

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.029
                     EEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE-S--GGGGG..S-HHHHHHCC..SS-EEEESSS-C CS
  UDPG_MGDP_dh_C  33 vkiyDPkvkeeaveaeleekgvevvdsleealkgadaiviltehdefke..ldlaklkelm..kpavvfDgrnvl 103
                     + iy+P  +e  +++ + + ++++++s+ee ++++ +i i+++ + +++  +d+  ++++    +av+ D r ++
      CCG93302.1  44 IPIYEPGLEELVQKNVK-KGTLHFTESIEEGVEKSLVIFIAVPTPPLEDgsVDMTYIEKVArqIAAVLKDYRVIV 117
                     67999999998888755.689*********************999888744466666665554445555666555 PP

  == domain 2  score: 100.7 bits;  conditional E-value: 3.6e-32
                     EE-SSSSTT-S--TT-HHHHHHHHHHHCTSEEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE-S--GGGGGS-HHHHHHCCSS-EE CS
  UDPG_MGDP_dh_C   2 ilGlafKkdtdDlReSpaldiieeLleegaevkiyDPkvkeeaveaeleekgvevvdsleealkgadaiviltehdefkeldlaklkelmkpavv 96 
                     +lGlafK++tdD+R S a+d+++  l+ega v+++DPk++ +a+e    + ++++++s+ + +++ad++vi+te++ef +ld++++k++m  ++v
      CCG93302.1 314 LLGLAFKNNTDDVRSSVAMDLARVFLKEGAIVQAFDPKAMGKAKEV---LPSIHYCSSALDVAEEADCVVIATEWEEFINLDWKSMKSKMISPIV 405
                     79******************************************99...789******************************************* PP

                     EESSS-CCC CS
  UDPG_MGDP_dh_C  97 fDgrnvldp 105
                     fDgrn+ld+
      CCG93302.1 406 FDGRNLLDK 414
                     ******985 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   6.3e-08   9.4e-05       1     107 [.       2     137 ..       2     148 .. 0.89
   2 ?    2.9   0.0     0.072   1.1e+02      13      61 ..     333     381 ..     330     389 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 6.3e-08
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT....................EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS. CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg....................akaaesieelvasldvvitmvkagkavdevieg. 75 
                    ki +iG G  G      +++ g++v++++ +++k+++l+a +                    ++ +esiee v++  v+++ v+  +  d  ++  
     CCG93302.1   2 KISIIGSGYVGLTTGACFADIGHEVICIDNDSSKIKSLLAGNipiyepgleelvqknvkkgtLHFTESIEEGVEKSLVIFIAVPTPPLEDGSVDMt 97 
                    699************************************9999*******************9********************9876443333333 PP

                    ........HCCC--TT-EEEE-S---HHHHHHHHHHHHHT CS
  NAD_binding_2  76 ........llealkkgdilidgstsspedtrelakelkek 107
                            +++ lk  ++++d st+ +++ +++++ +k+ 
     CCG93302.1  98 yiekvarqIAAVLKDYRVIVDKSTVPVKTGEKVYQTIKRY 137
                    3336777799999*******************99998875 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.072
                    HHHHHHHHTT-EEEEE-SSH.HHHHHHHHTTEEE-SSHHHHHHHCSEEEE CS
  NAD_binding_2  13 nmalnllkagykvavynrtk.ekveelvaegakaaesieelvasldvvit 61 
                     +a+ +lk+g  v +++ ++  k++e++   ++ ++s+ ++++++d+v++
     CCG93302.1 333 DLARVFLKEGAIVQAFDPKAmGKAKEVL-PSIHYCSSALDVAEEADCVVI 381
                    588999999********66514555544.6799*************9987 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.3   0.00059      0.88       1      75 [.       2      90 ..       2     120 .. 0.85
   2 ?    5.5   0.0     0.017        26      23      77 ..     162     221 ..     151     235 .. 0.81
   3 !    9.2   0.0    0.0012       1.8      34      77 ..     348     391 ..     329     405 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00059
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHH.HHHC..................-EEECECHHHHHHH-SEEEE-S-HHHHH CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeela.eelg..................vkvtavdneeaaeeadvvvlavkpedve 75
                   ki iiG+G +g +    ++  g   he++ + +++ +k+++l   ++                      t+ + ee +e++ v+++av++  +e
     CCG93302.1  2 KISIIGSGYVGLTTGACFADIG---HEVICI-DNDSSKIKSLLaGNIPiyepgleelvqknvkkgtLHFTE-SIEEGVEKSLVIFIAVPTPPLE 90
                   799*******************...****88.888888888762444488999999999999999555555.99999999*******9987655 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.017
                    S.-GGCEEEEEESSCCCHHHHHHHHC......-EEECECHHHHHHH-SEEEE-S-HHHHHHH CS
  F420_oxidored  23 a.qpheivvansrnpekaeelaeelg......vkvtavdneeaaeeadvvvlavkpedveev 77 
                      +p  +v++   + e+a ++ +e++      + +t  + +e++++a   +la+k +++ ++
     CCG93302.1 162 LlHPDRVVIG--ATSERAIKIMKEVYapfkapILITDLNSAELIKHASNSFLALKISYINAL 221
                    4567778866..788888888888888999*9***********************9988765 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0012
                    SSCCCHHHHHHHHC.-EEECECHHHHHHH-SEEEE-S-HHHHHHH CS
  F420_oxidored  34 rnpekaeelaeelg.vkvtavdneeaaeeadvvvlavkpedveev 77 
                     +p+ + +++e l  +  ++ ++ ++aeead vv+a  +e + ++
     CCG93302.1 348 FDPKAMGKAKEVLPsIHYCS-SALDVAEEADCVVIATEWEEFINL 391
                    45555555555554345566.99****************998776 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.2e-07   0.00048       1      83 [.       3      91 ..       3     175 .. 0.88
   2 ?    2.0   0.0       0.1   1.5e+02      63     118 ..     200     252 ..     174     263 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.2e-07
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCH.....SCCCCS-ESEEEE-SSGGGHHH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsae.....ekselepidlvivtvKayqtee 83
                i i+G+G +G + +a+ a  g++v++i+++  ++++l   ++ ++++g ee ++++++  +       ++  e+  +++++v++ ++e+
  CCG93302.1  3 ISIIGSGYVGLTTGACFADIGHEVICIDNDSsKIKSLLAGNIPIYEPGLEELVQKNVKKGTLhftesIEEGVEKSLVIFIAVPTPPLED 91
                78**********************************************66666666666655666765556677888888888877765 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.1
                 CCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEEEEEESSSSCHHHHHTTTSTTS CS
        ApbA  63 kselepidlvivtvKayqteealeeikplldpntvvlllqNGlgheeelrealpkp 118
                  + ++++++ ++++K     +al++i ++ + n  v ++ +G+g  +++ +++ k+
  CCG93302.1 200 AELIKHASNSFLALKISY-INALSRICEAAGAN--VQMVAEGMGLDHRIGKHFLKA 252
                 456778888888888654.45588888888887..99************9998554 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.1e-06    0.0091       1      98 [.       2     105 ..       2     156 .. 0.76
   2 ?   -3.0   0.0       4.3   6.4e+03      57      77 ..     363     383 ..     356     390 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.1e-06
                     -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSB......TTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHHHHHHHH CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeineehen......vkyLpgiklpenlvattdlaealkgadiivlvvPsqalrevlkkl 89 
                     ki+++G+G  G +  + +a+ ghev  + +++  i+++ + +        ++ +++     +l++t+ ++e ++++ +i+++vP+  l++   ++
      CCG93302.1   2 KISIIGSGYVGLTTGACFADIGHEVICIDNDSSKIKSLLAGNIPiyepglEELVQKNVKKGTLHFTESIEEGVEKSLVIFIAVPTPPLEDGSVDM 96 
                     79******************************88887766654311111123334444556899********************98887776666 PP

                     CCC--TT-E CS
  NAD_Gly3P_dh_N  90 kgllkkkai 98 
                     + + k   +
      CCG93302.1  97 TYIEKVARQ 105
                     655444444 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.3
                     EEEES-HHHHHTT--EEEE-- CS
  NAD_Gly3P_dh_N  57 lvattdlaealkgadiivlvv 77 
                     ++  +   +++++ad++v++ 
      CCG93302.1 363 IHYCSSALDVAEEADCVVIAT 383
                     566667778888888888875 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.9e-06     0.015       1      32 [.       2      33 ..       2      76 .. 0.84
   2 ?   -2.5   0.0       5.2   7.8e+03      51      72 ..     273     294 ..     266     299 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.9e-06
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversd 32
                k+ ++G+Gy+gl  ++ +a++g++V ++++ +
  CCG93302.1  2 KISIIGSGYVGLTTGACFADIGHEVICIDNDS 33
                578*************************9865 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.2
                 HHTTEEEECSEEEEEEEEETTS CS
   Pyr_redox  51 ekngievllntkveeiegsedg 72 
                 +++g ++ l ++v +i+ ++++
  CCG93302.1 273 QELGYDFKLLKEVSQINSDQKE 294
                 5678899999999999988875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.8e-05     0.056     144     174 ..       2      32 ..       1      74 [. 0.80
   2 ?   -0.2   0.0      0.32   4.7e+02      57      87 ..     267     297 ..     201     378 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.8e-05
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlvear 174
                  +i ++G+Gy+G+ + a +a++g+ev  ++  
   CCG93302.1   2 KISIIGSGYVGLTTGACFADIGHEVICIDND 32 
                  688*********************9988764 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.32
                  H..HHHHCHHHHCCCCHCCTCEEEEESCEEEEE CS
                  x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  57 s..evvkklnqgielllgeevvkidpgkkkvkl 87 
                  +  +  ++l+ +++ll++  v +i  ++k++ l
   CCG93302.1 267 AfiKISQELGYDFKLLKE--VSQINSDQKEIFL 297
                  133333333333333333..4444444444444 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.4e-05     0.036       1      41 [.       2      42 ..       2      84 .. 0.76
   2 ?   -2.8   0.0       3.4   5.1e+03      15      32 ..     335     352 ..     331     380 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-05
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalek 41
                k+ +iG+G +G    a fa  g+eV  +d +++++++ l+ 
  CCG93302.1  2 KISIIGSGYVGLTTGACFADIGHEVICIDNDSSKIKSLLAG 42
                689***************************99999887664 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.4
                 HHHHHHTT-EEEEE-S-H CS
     3HCDH_N  15 aavfasagleVvlvdise 32 
                 a vf+++g  V+ +d ++
  CCG93302.1 335 ARVFLKEGAIVQAFDPKA 352
                 667777777777766543 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00016      0.24      12      49 ..       2      39 ..       1     105 [. 0.90
   2 ?   -3.5   0.0       5.9   8.8e+03      86     113 ..     155     182 ..     151     190 .. 0.72
   3 ?   -0.2   0.0      0.55   8.3e+02      41      76 ..     347     383 ..     325     391 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
  Rossmann-like 12 svGiisaGrvGtalgaaleraghvvvgisaisaasrer 49
                   ++ ii++G vG + ga ++ +gh v+ i   s+  + +
     CCG93302.1  2 KISIIGSGYVGLTTGACFADIGHEVICIDNDSSKIKSL 39
                   789************************99888766655 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.9
  Rossmann-like  86 kglaatgavraGtivahtsganGveila 113
                    +g+a ++ +++ ++v+ +++   ++i++
     CCG93302.1 155 EGVAIHDLLHPDRVVIGATSERAIKIMK 182
                    6777787788888887777777777665 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.55
  Rossmann-like  41 aisaasreraerrlPdvpvle.vedvaaraellllav 76 
                    a    +  +a++ lP +   +   dva++a+ +++a 
     CCG93302.1 347 AFDPKAMGKAKEVLPSIHYCSsALDVAEEADCVVIAT 383
                    4555566789999999987652569999999999985 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0018       2.7      38      73 ..       2      37 ..       1     169 [. 0.92
   2 ?    2.5   0.0     0.055        83      46      99 ..     329     383 ..     276     387 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0018
                  EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73
                  ++ iiG G +G ++  +++ +g +vi++d   +k +
    CCG93302.1  2 KISIIGSGYVGLTTGACFADIGHEVICIDNDSSKIK 37
                  789**************************9887665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.055
                   HHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHHHH-SEEEE-S CS
  2-Hacid_dh_C  46 rIGqavakrlkafgmkviaydrskkkeeeeeelgvelv.sleellaesDivslhl 99 
                   +++  +a+++ + g+ v a+d++   +++e    ++++ s  ++ +e+D+v++++
    CCG93302.1 329 SVAMDLARVFLKEGAIVQAFDPKAMGKAKEVLPSIHYCsSALDVAEEADCVVIAT 383
                   5777888899999999999999999777666666755548899999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3215.87
//
Query:       CCG93303.1  [L=422]
Description: Adenylosuccinate synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.3e-167  555.4   0.0   9.3e-167  555.2   0.0    1.0  1  Adenylsucc_synt  Adenylosuccinate synthetase


Domain annotation for each model (and alignments):
>> Adenylsucc_synt  Adenylosuccinate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  555.2   0.0  5.2e-171  9.3e-167       2     418 ..       4     418 ..       3     419 .. 0.99

  Alignments for each domain:
  == domain 1  score: 555.2 bits;  conditional E-value: 5.2e-171
                      EEEE-SSS-S-HHHHHHHHHTT-SEEEE-SB-TTSSEEEEETTEEEEESSS-GGGGSTT-EEEE-TTBEE-HHHHHHHHTTSS-TT......TE CS
  Adenylsucc_synt   2 vvvGaqwGDEGKGkivDllaeeadvvvRfqGGanAGHtvvvdgkkyklhllpSGilnpgvvnviGngvvvdpealleEieeleakgvelskerl 95 
                      v+vGaqwGDEGKGki+D+l++++dvvvR+qGG+nAGHtv v+++k++lhl+pSGil p++ +++G+g+v+dp +l++Ei+++e++g+e+ ++rl
       CCG93303.1   4 VLVGAQWGDEGKGKIIDFLTQDVDVVVRCQGGDNAGHTVEVHDEKFVLHLIPSGILWPDKFCLLGSGMVIDPVSLVDEIKNIEKRGIEI-RSRL 96 
                      89*************************************************************************************98.8*** PP

                      EEETTSEE--HHHHHHHHHHHHH----------TTHHHHHHHHHTT---BGGGGGSHHHHHHHHHHHHHHTHHHHHHT...T-----HHHHHHH CS
  Adenylsucc_synt  96 lisdrahlvlpyhkalDkleeaakgkkkiGtTkkGiGpayadkvarrgirvgdlldeeeleeklekllelknkllekldkeeleveelleellk 189
                      +is+ ah+v+pyh+ +D+l e+++gk++iGtTkkGiGpayadkv+r g+r+ dlld+++++ekl+ l+e+kn++++ l  e++  +e+++ +l+
       CCG93303.1  97 FISETAHMVFPYHRIIDELLERRRGKSRIGTTKKGIGPAYADKVSRVGLRILDLLDRKKFSEKLKILVEEKNRYIHFLGGEPVLWNEIADAYLA 190
                      **************************************************************************99998899999********* PP

                      HHHHHGGGEE-HHHHHHHHHHTT--EEEE--S-GGG-TTTSSTTSS-SS--SHHHHHHHTT--GGGEEEEEEEEESSEEESSSS--TTB--SHH CS
  Adenylsucc_synt 190 yaerlkpyvvdtvallnealkegkkvLfEGaqgtllDidhGtYPfvTsSnttaggaltglglapkkidevlgvvKAyttrvGeGpfptelkdev 283
                      +a++++++v++t+ +l+ea  + kk+LfE+aqgt+lDid+GtYPfvTsSnttagga+tg+gl+p+ki++v+g +KAyttrvGeGpfp e   e 
       CCG93303.1 191 AADEIASMVTNTTLWLHEASLSRKKILFESAQGTFLDIDFGTYPFVTSSNTTAGGAITGSGLPPHKISRVIGCMKAYTTRVGEGPFPVEN-AEL 283
                      *****************************************************************************************6.9** PP

                      HHHHHHHTT-B-TTT--B-EEE-EEHHHHHHHHHHHT-SEEEEE-GGGGTT-SEEEEEEEEEETTEEESS--S.....-GEEEEEEEEE--.S- CS
  Adenylsucc_synt 284 geklrekGkEfgtttgrpRrcGwlDlvllryavrvngvtelaltklDvldgldeikvcvaYkldgkeldefpasleelekvepvyeelpgWked 377
                       + l+++G+Efg+ttgr RrcGw+D vl+rya  +ng++e+a+t+lD ld++++i +cvaY+++gk+l++ p s+e+le++ p+yee+pgW e 
       CCG93303.1 284 SNMLHSTGREFGSTTGRARRCGWFDGVLARYASLINGFHEVAVTNLDGLDTIEKIPICVAYEYKGKILKYPPNSVEQLEECIPIYEEFPGWLEY 377
                      ********************************************************************************************** PP

                      -TT---GGGS-HHHHHHHHHHHHHHTS-EEEEE-SSSTT-E CS
  Adenylsucc_synt 378 isgvrsfedlpenakkyvefieellgvpvkiisvGpereqt 418
                      + gvr f++lp++a++y++ +  l+g+p+ki+svG +reqt
       CCG93303.1 378 TGGVRCFKELPKAAQEYLNKLGVLVGAPIKIVSVGADREQT 418
                      ***************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3070.78
//
Query:       CCG93304.1  [L=264]
Description: Undecaprenyl pyrophosphate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-77  258.5   0.1    5.6e-77  258.3   0.1    1.0  1  Prenyltransf  Putative undecaprenyl diphosphate synthase
  ------ inclusion threshold ------
      0.017   15.4   0.3      0.044   14.0   0.1    1.6  1  Abi_2         Abi-like protein


Domain annotation for each model (and alignments):
>> Prenyltransf  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.3   0.1   6.2e-81   5.6e-77       1     224 []      37     257 ..      37     257 .. 0.95

  Alignments for each domain:
  == domain 1  score: 258.3 bits;  conditional E-value: 6.2e-81
                   EE--HHHHHHHTT.S-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEEGGGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEESSGGGS-H CS
  Prenyltransf   1 imDGNrRwAkkrgleereeGhkaGaealkeilelclelgvkvvtvYafSteNfkRskeevdalmellkeellkeelkellkegvrvrviGdlellpe 97 
                   imDGN+RwA+kr+ ++r eGhk+G++a ke+++++le+g++++t+Y+fS++N+kR+  e++alm+++++ llk+e +el+++g+++ +iG++  lp+
    CCG93304.1  37 IMDGNGRWAEKRN-LPRIEGHKEGLNAAKEVVQTALEIGIQYLTLYVFSIDNWKRPYFEIRALMTMFQDFLLKNE-DELVERGIKLLTIGRTADLPR 131
                   9************.88888************************************************87666666.9******************** PP

                   HHHHHHHHHHHHHT.TTTSEEEEEEEEE-HHHHHHHHHHHHHHTT..SSSG.GGHSHHHHHCTSTT..TSSS-SEEEEESS--S-TTSSTTTTTT-E CS
  Prenyltransf  98 dvlealekaeeatkknnkklvlniavnYgsrdeiveavrelvkekseekkk.eeideetlekhlytakalpdpDlliRtsGeeRlSnFllwqlayse 193
                   +++++l  + ++t+kn  kl+l++a++Yg+r +i++avre++k+ ++++ + ++ide+ +++hl+t+ + pdpD liRtsGe+RlSnFllw+++y+e
    CCG93304.1 132 SLQNQLMATCKKTEKN-FKLILTLALSYGARLDILNAVREIAKKAQSREINlNDIDEKFFKAHLSTHFS-PDPDFLIRTSGEMRLSNFLLWESSYTE 226
                   **************55.55**********************999877776667889*********9666.*************************** PP

                   EEEESSSGGG--HHHHHHHHHHHHHCHHHTT CS
  Prenyltransf 194 lyfldvlWPdfskedllealleyqkrerrfg 224
                   +yf++++WPdf++e++leal +++kr+rrfg
    CCG93304.1 227 FYFTNTFWPDFRREEFLEALATFAKRQRRFG 257
                   *****************************98 PP

>> Abi_2  Abi-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   4.9e-06     0.044       7     102 ..      91     189 ..      89     207 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.9e-06
       Abi_2   7 gyyrlsgYkrpfrk...kkddkf.k.gttfeeilalykfDrkLrslllkaieriEialrtaiayelskedeeayldsdnfkkkkkkkkekkk.liekie 99 
                  y+++++ +  f++   k++d+  + g+++  i +++++ r L++ l+  +++ E++++ +++ +ls++   + l++   +++ kk ++++  l ++i+
  CCG93304.1  91 PYFEIRALMTMFQDfllKNEDELvErGIKLLTIGRTADLPRSLQNQLMATCKKTEKNFKLILTLALSYGARLDILNA--VREIAKKAQSREInL-NDID 186
                 58888899999999999999999879*****************************************6666666665..333333333332223.5555 PP

       Abi_2 100 kei 102
                 +++
  CCG93304.1 187 EKF 189
                 554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2037.92
//
Query:       CCG93305.1  [L=297]
Description: Phosphatidate cytidylyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-49  166.6  20.4      1e-48  166.4  20.4    1.0  1  CTP_transf_1  Cytidylyltransferase family


Domain annotation for each model (and alignments):
>> CTP_transf_1  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4  20.4   5.8e-53     1e-48       3     263 ..      16     289 ..      14     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 5.8e-53
                   HHHHHHHHHHHHHHTTTSH..HHHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHH...HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHH---.. CS
  CTP_transf_1   3 Rvitalvlilivliilllgg.lvflllvavvvilalkElirlvrlkkrekrllllllslvlllllllflylesliallklvlllvlvllllvlkvl. 97 
                   R++++lvl +++li+ll+   ++ ++++++  ++a +E+ r++++k ++   l  ++ + +l+l ++f+   +++ +    ++   +++ l + ++ 
    CCG93305.1  16 RLLSSLVLWGVILIALLFSLkILEMIIFMCFGLVAQEEFYRMQQAKGHKIFRLAGFTAAFCLYLGIWFFQNVHAVGYSFYPFFEQILYFGLLTILFg 112
                   8999999999998888777747777777888888899999****99999887777677777777777766555555544444444443333333334 PP

                   ........HHHHHHHHHHHHHHHHHTHHHH.....TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---B-S-TTS---BHHHHHHHHHHHH CS
  CTP_transf_1  98 ......kskskklervilallallyvvlll....qslllienikeglllvllllalvvaaDigaYffGklfGktkllpkiSPkKTveGfigGlvaav 184
                         ++ ++ +++++l+ll ++yv++l+    ++ +    ++++  +++++++++ ++D+ga+++Gk fG + l+p++SPkKT+eG+ gG+++++
    CCG93305.1 113 qviwnwDKLTNPIASIALTLLGFFYVAFLFsfleRISFCKGLPFNADAALFYIISVTKLSDTGAFLIGKNFGSHLLIPHVSPKKTWEGLGGGIFFSF 209
                   444799999********************9777777777778888999999999******************************************* PP

                   HHHHHHHHHHHCTS.---TTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSS-S-SSSSS-HHHHHHHHHHHHHHHHHHH CS
  CTP_transf_1 185 vvglllalvlskal.alsllhllllslllslvavfGDLveSglKRafgiKDsGkliPGhGGilDRlDsllfaapvvylll 263
                   ++g++l   +sk++    l+ ++lls+++++++ +GDL +S++KR++ +KDsG++iPG GG+lD +Dsll+++p++y+++
    CCG93305.1 210 LAGTFLPIGFSKFFvGFPLIDSILLSVVIGIIGAVGDLAKSVVKRDAHVKDSGHVIPGIGGLLDLIDSLLLSGPFFYFYC 289
                   ******999999883455789********************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2197.85
//
Query:       CCG93306.1  [L=215]
Description: Phosphatidylserine decarboxylase proenzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-31  108.2   0.1    2.7e-30  105.4   0.1    1.8  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase
     0.0004   20.1   0.0    0.00079   19.1   0.0    1.5  2  DUF4131         Domain of unknown function (DUF4131)
     0.0058   16.4   1.1        4.8    7.1   0.0    3.3  4  Biotin_lipoyl   Biotin-requiring enzyme
     0.0083   16.0   0.1      0.086   12.7   0.0    2.3  3  GCV_H           Glycine cleavage H-protein


Domain annotation for each model (and alignments):
>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.1     6e-34   2.7e-30       4     199 ..      45     211 ..      43     212 .. 0.93

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 6e-34
  PS_Dcarbxylase   4 ffvrklkdgaRpidddpgaivsPaDgrilqigeieegsviqvKgityslrdLlgeasessadsfkngyfvviyLspgdyHryhaPvsgkveerrh 98 
                     f  +++++++R i++dp+ i++PaDg+i++i ++ee+s +                         + + ++i+Ls++d+H++++Pv+gk+ + ++
      CCG93306.1  45 FLFYFFRNPERTIPTDPHYILAPADGKIVEI-KVEEKSPFY-E---------------------GKTTKISIFLSIFDVHVNRSPVDGKIIKKEY 116
                     7889***************************.888866665.1.....................24578************************** PP

  PS_Dcarbxylase  99 ipGellsvnpsalkelrglftlneRvvlvie.wkG.kvavvpvGatnvgsivlnvlkgdelkkGeelGyFqfGStvvlvfeagkfieslvekgqk 191
                      +G +l +++ +++ l      neR+   i+ +kG  v + +++++++++ v +++ gd++k Ge++G+++fGS++ l+++ +      v++g+k
      CCG93306.1 117 HKGIFLDARNPKASLL------NERQDWWIQsTKGcIVGIRQIAGFIARRLVSWKETGDTIKMGERIGMIKFGSRTELYLPSD--CIVVVQNGEK 203
                     **************99......*********659*5599******************************************99..8899****** PP

  PS_Dcarbxylase 192 vkmGeklg 199
                     v++G++++
      CCG93306.1 204 VEAGKTVV 211
                     *****997 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.8e-07   0.00079       7      81 ..      13      83 ..       8     112 .. 0.64
   2 ?   -3.5   0.0       1.5   6.9e+03     109     126 ..     161     177 ..     158     179 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.8e-07
     DUF4131  7 lvllalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqlles.gqeviveGvvaslpel 81
                + + +++l l++lll       ++  ++++++ll+l++l++++r p+++    ++++       ive +v+++   
  CCG93306.1 13 IAFTMAMLSLIFLLLP-----FKPAKFVGVFFLLALLFLFYFFRNPERTIPTDPHYILApADGKIVEIKVEEKSPF 83
                3344444555555555.....4677777777777777777777777777777777776664445577888776555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.5
     DUF4131 109 lvtvpkspaeglrpGdrl 126
                 lv++++  ++ ++ G+r+
  CCG93306.1 161 LVSWKETGDT-IKMGERI 177
                 7889998888.9999997 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0011       4.8      45      66 ..      64      85 ..      62      88 .. 0.82
   2 ?   -3.9   0.0       2.8   1.3e+04      47      54 ..     105     112 ..     104     115 .. 0.73
   3 ?    1.0   0.0     0.082   3.7e+02      21      33 ..     165     177 ..     152     181 .. 0.70
   4 !    4.8   0.1    0.0057        25      56      70 ..     196     210 ..     191     212 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0011
                   EEBSSSEEEEEESSTTTEEE-T CS
  Biotin_lipoyl 45 ieapkaGvvkeilvkeGdtvev 66
                   i ap++G+++ei+v+e +   +
     CCG93306.1 64 ILAPADGKIVEIKVEEKSPFYE 85
                   779***********98776555 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.8
                    BSSSEEEE CS
  Biotin_lipoyl  47 apkaGvvk 54 
                    +p++G++ 
     CCG93306.1 105 SPVDGKII 112
                    78888875 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.082
                    SSTTCEE-TTSEE CS
  Biotin_lipoyl  21 vkvGdkVkagqvl 33 
                    +++Gd++k g+ +
     CCG93306.1 165 KETGDTIKMGERI 177
                    5677777777655 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0057
                    ESSTTTEEE-TTCEE CS
  Biotin_lipoyl  56 ilvkeGdtvevgdll 70 
                    ++v++G++ve+g+ +
     CCG93306.1 196 VVVQNGEKVEAGKTV 210
                    455566666666554 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.14   6.5e+02      63      75 ..      64      76 ..      62      87 .. 0.82
   2 ?   -2.5   0.0         1   4.6e+03      65      74 ..     105     114 ..      98     117 .. 0.73
   3 !   12.7   0.0   1.9e-05     0.086       6      78 ..     136     203 ..     131     215 .] 0.79

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.14
                EE-SSSEEEEEE- CS
       GCV_H 63 vyapvsGevvevN 75
                + ap +G++ve+ 
  CCG93306.1 64 ILAPADGKIVEIK 76
                6799999999985 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1
                 -SSSEEEEEE CS
       GCV_H  65 apvsGevvev 74 
                 +pv+G+++++
  CCG93306.1 105 SPVDGKIIKK 114
                 6778887765 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 1.9e-05
                 TSEEEEEETT.EEEEEE-HHHHHHH-SEEEEE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE-GGG CS
       GCV_H   6 ehewvkveedgvatvGitdfaqeelgdvvfvelpevgtkvkkgeslaavEsvKaasevyapvsGevvevNekl 78 
                 ++ w++  ++    vGi ++a   + ++v+   +e g+++k ge ++++  + + +e+y p +  vv  N + 
  CCG93306.1 136 QDWWIQSTKG--CIVGIRQIAGFIARRLVS--WKETGDTIKMGERIGMIKFGSR-TELYLPSDCIVVVQNGEK 203
                 3348888766..89*********9999975..79***************99976.699*9*999998888543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1684.56
//
Query:       CCG93307.1  [L=305]
Description: Phosphatidylserine synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-12   46.1   0.3    6.2e-12   46.1   0.3    3.1  3  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
    0.00085   19.1   0.1      0.021   14.6   0.0    2.3  2  TMEM208_SND2     SRP-independent targeting protein 2/TMEM208
  ------ inclusion threshold ------
       0.01   15.4   6.4      0.021   14.3   6.4    1.4  1  DmsC             DMSO reductase anchor subunit (DmsC)


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.3     1e-15   6.2e-12       2      66 .]      17      93 ..      16      93 .. 0.88
   2 ?   -3.0   0.1       2.2   1.3e+04      32      41 ..     118     129 ..     100     139 .. 0.53
   3 ?    1.6   2.1      0.08   4.8e+02       9      38 ..     159     197 ..     155     253 .. 0.64

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 1e-15
                     -HHHHHHHHHHHHHHHHHGGGS-H................HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf  2 lPnaiTllrlllsvlailllltyyp..............lvlailllliasltDalDGklARrlnqvstlGkllDslaD 66
                     lPn++T  +l++++lail +l   +              +   + ++l+a+++D lDG+lAR  +++s +G+ +DslaD
       CCG93307.1 17 LPNLLTAGNLICGFLAILKILE--GsilrdsdtagwihtYENSLDFILAAFVFDVLDGRLARFGGKESMFGREFDSLAD 93
                     8****************97744..345888888888887777777889******************999*********9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.2
                      HHHH..HHHHHT CS
  CDP-OH_P_transf  32 llll..iasltD 41 
                       +++  i+ +++
       CCG93307.1 118 GWIVasIYLVCG 129
                      233323444444 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.08
                      HHHHHHHHHHHGGGS-H...............HHHHHHHHHHH CS
  CDP-OH_P_transf   9 lrlllsvlailllltyyp.............lvlaillllias 38 
                      ++l++s++ + +l++y               l   +lll++++
       CCG93307.1 159 AGLVCSITLL-MLYFY-EtdrelekgwgkyiL--VVLLLFLSI 197
                      6777766555.33333.348888888888542..333332222 PP

>> TMEM208_SND2  SRP-independent targeting protein 2/TMEM208
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2     0.026   1.6e+02      29      73 ..     164     209 ..     156     216 .. 0.74
   2 !   14.6   0.0   3.5e-06     0.021     106     163 ..     224     284 ..     217     290 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.026
  TMEM208_SND2  29 alylllrlll.rsslrprslllylllslpalllyyvlekmgrpkyd 73 
                    ++ll+ +++  ++   + + +y+l+ l+ +l++ +++k   p+++
    CCG93307.1 164 SITLLMLYFYeTDRELEKGWGKYILVVLLLFLSIMMFSKNLYPSFK 209
                   4555656666666666667999999999999999999998888775 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.5e-06
  TMEM208_SND2 106 vlsilfg.nkfWllylviPayalYklwglilgpaff.kgagsa...eeaaeeeeaksKrqeKl 163
                   ++++++g + +++ ++++  +++Y+l+g++   +f+ k+ ++a   ee  eeee+++   eK 
    CCG93307.1 224 FVVCILGlTIVYYKWMLAVDFLGYLLYGFFR--PFIsKPLRKAieeEEGDEEEEGEREGEEKE 284
                   5677777799*********************..777455554476633333333333333333 PP

>> DmsC  DMSO reductase anchor subunit (DmsC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.5e-06     0.021      97     167 ..     167     235 ..     155     242 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.5e-06
        DmsC  97 agliwLvavlkklskaleklllivtailgiifvymmamvYasiktvptWhsgyTllaflltvlltGsvlly 167
                  ++ +      +l k+++k +l+v  +   i++++   +Y s k + tW++++T++ fl +v ++G++++y
  CCG93307.1 167 LLMLYFYETDRELEKGWGKYILVVLLLFLSIMMFSK-NLYPSFKGI-TWKTKWTVPKFLFVVCILGLTIVY 235
                 333444455567788888888888777777777765.68*****98.8******************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1000  (0.0557756); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2165.60
//
Query:       CCG93308.1  [L=377]
Description: L-lysine 2,3-aminomutase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-23   82.6   0.3    4.7e-23   81.8   0.3    1.3  1  LAM_C        Lysine-2,3-aminomutase
    1.9e-11   44.7   0.0    4.1e-11   43.5   0.0    1.6  1  Radical_SAM  Radical SAM superfamily
    5.8e-06   26.4   0.0    1.1e-05   25.6   0.0    1.6  1  Fer4_14      4Fe-4S single cluster domain
    6.9e-06   26.4   0.0    1.2e-05   25.5   0.0    1.4  1  Fer4_12      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> LAM_C  Lysine-2,3-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.3     1e-26   4.7e-23       2      63 ..     305     366 ..     304     375 .. 0.91

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 1e-26
       LAM_C   2 eglrGhtsGyavPtfvvdaPgGGGkialqPnyllsqsedkvvlrnfeGvitsypePenyvkg 63 
                  +lrG t+G+avP++vvd PgGGGki+l+P+y++ + edkv+lrn+eG i syp  ++  ++
  CCG93308.1 305 RNLRGFTTGFAVPQYVVDGPGGGGKIPLNPDYVIGYYEDKVLLRNYEGKIYSYPGGQDTKQE 366
                 579***************************************************98887554 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   9.1e-15   4.1e-11       3     165 ..     113     266 ..     111     268 .. 0.79

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 9.1e-15
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpdeeklerllel 100
                  vt  C+  C++C+r++ v+    ++  + ++++ e  ++ ++  v+ v+++gg+pll +d  +l + l++l+ +  +i ++  gt++       +l+ 
   CCG93308.1 113 VTDRCASYCRYCTRSRIVSGVSGQKLETDDKLAFEYLKN-HRE-VRDVLISGGDPLLLSDS-RLERLLRQLR-EIPHIEIIRIGTRI-----PIFLPQ 201
                  7999***********997777777777777777777777.465.*************9887.4444444443.78999999999997.....777777 PP

                  T.-SEEEEEEBSSSHH..HHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHH CS
                  x.xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 101 g.vdrvslgleaadde..kvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleelle 165
                  + +d +   l+a+++    ++  + +++   ev+ alekl++agi+   +  v+l+G nd++ + +le
   CCG93308.1 202 RiTDSLCKMLKAYHPLwlNIHANH-PKELTMEVKIALEKLADAGIP-LGNQSVLLKGINDDH-QIILE 266
                  777777778888888755555555.77778899*************.**************8.66665 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.4e-09   1.1e-05       1      83 [.     110     189 ..     110     223 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.4e-09
     Fer4_14   1 lfvrlsgCnlsCkgCdnketwks.elgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekki 83 
                 lf+ + +C   C+ C ++   +  + +k +t++ l   ++ lk+++ +++ + ++GG+PL   +++ l +l+++l+e  +   i
  CCG93308.1 110 LFLVTDRCASYCRYCTRSRIVSGvSGQKLETDDKL--AFEYLKNHREVRD-VLISGGDPL-LLSDSRLERLLRQLREIPHIEII 189
                 688899**********9997776355566666666..6667999999888.*********.569**********9986644445 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.8e-09   1.2e-05       8      81 ..     110     182 ..      99     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2.8e-09
     Fer4_12   8 lslfvsgCnlsCkgCfnketwsfksgkeftkelleeiiedlkk.esiegltllGGEPllpenaeallelvkevke 81 
                 l+l + +C   C++C    + s  sg++ +++ +   +e lk+ ++++++ ++GG+Pll   ++ l +l+++++e
  CCG93308.1 110 LFLVTDRCASYCRYCTRSRIVSGVSGQKLETDDKLA-FEYLKNhREVRDVLISGGDPLL-LSDSRLERLLRQLRE 182
                 4666899*********************97444433.3444432888************.899999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2923.64
//
Query:       CCG93309.1  [L=397]
Description: SAM-dependent methyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-20   71.9   0.3    5.8e-20   70.9   0.3    1.6  1  PUA_3            PUA-like domain
    4.3e-18   65.5   0.0    5.6e-18   65.1   0.0    1.2  1  Methyltrans_SAM  S-adenosylmethionine-dependent methyltransfe
      6e-12   45.6   0.0    1.1e-11   44.8   0.0    1.3  1  Cons_hypoth95    Conserved hypothetical protein 95
      3e-07   30.3   0.0    6.5e-07   29.3   0.0    1.5  2  Methyltransf_31  Methyltransferase domain
    4.9e-07   29.5   0.0    1.1e-06   28.3   0.0    1.5  1  MTS              Methyltransferase small domain
    7.7e-07   29.7   0.1    2.2e-06   28.3   0.0    1.8  2  Methyltransf_25  Methyltransferase domain
     0.0005   19.7   0.0    0.00083   19.0   0.0    1.3  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
     0.0021   17.2   0.0     0.0071   15.5   0.0    1.9  2  Methyltransf_3   O-methyltransferase
     0.0025   17.8   0.0     0.0048   16.8   0.0    1.4  1  PUA              PUA domain
     0.0067   15.9   0.0      0.011   15.1   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
  ------ inclusion threshold ------
      0.048   14.3   0.0        0.1   13.2   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
      0.052   13.8   0.1       0.12   12.6   0.1    1.7  1  UPF0113          UPF0113 PUA domain
      0.055   13.1   0.0      0.082   12.6   0.0    1.3  1  UPF0020          Putative RNA methylase family UPF0020
       0.13   11.9   0.1       0.32   10.6   0.1    1.7  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
       0.16   11.8   0.0       0.26   11.1   0.0    1.3  1  N6-adenineMlase  Probable N6-adenine methyltransferase


Domain annotation for each model (and alignments):
>> PUA_3  PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.3   4.9e-23   5.8e-20       1      64 []      10      73 ..      10      73 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 4.9e-23
       PUA_3  1 viLkkkaekrlrqGhPwvfsneiasvegeledGdvVdvfsekgkflGtGyynpqskiavRilsr 64
                v L k++  r++ Gh wv++ ei   +++l++GdvV+v+s++g+ lG+G++n+qs+i+vRi+sr
  CCG93309.1 10 VYLIKEGRHRILEGHVWVYRTEISHFDEHLQNGDVVEVVSANGQNLGVGIWNSQSQISVRIYSR 73
                67889999******************************************************98 PP

>> Methyltrans_SAM  S-adenosylmethionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   4.7e-21   5.6e-18      74     242 ..     174     343 ..     106     375 .. 0.76

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 4.7e-21
  Methyltrans_SAM  74 asevlvgeldespvvvesglkyqldigrnqnfglfldmrlgrdwvqenakdknvlnlfaytcgfsvaaiaggaskvvnvdmargslnkgrdnhr 167
                      + e l+ +    + v  +g+   +di   q++gl+ld     + + + akdk+vl+ f+y   fs+ +   ga++++ vd + ++++ g++n  
       CCG93309.1 174 TKECLAHQAPGIFSVTLDGVTILVDILNGQKTGLYLDQAANYRLIANIAKDKRVLDCFSYQGLFSIFCALQGAKHCIAVDQSAAAIDIGKKNAD 267
                      45778888888899999***************************************************************************99 PP

  Methyltrans_SAM 168 lnghdlrrvsflgydifkswgkikksgpydlviidppsfqkgsfa...ltkdykkilrrlpellveggevlacvnspa 242
                        g  ++ v    +d ++   k k + ++dl+i+dppsf k         + y+ i  r  +ll  gg + +   s  
       CCG93309.1 268 SLGLRIDWVCENAFDWLRK--KEKEKQKFDLIILDPPSFTKTKVQkesAFRGYHEIHLRALNLLELGGYLASFCCSHH 343
                      9888888777777777665..4455678************998751114578999*999999**99999876554444 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   8.9e-15   1.1e-11      32     127 ..     214     308 ..     211     320 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 8.9e-15
                    HHHHHCCCHCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--S.SSTT CS
  Cons_hypoth95  32 lFnilaaeiegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPP.yake 126
                     + ++a+  +++rvLD+f+  G  ++ ++  gak++++v+++++a+ i k+n ++l+l+  ++ + e+a++ l+k+ k+k++fd++ lDPP + k 
     CCG93309.1 214 NYRLIANIAKDKRVLDCFSYQGLFSIFCALQGAKHCIAVDQSAAAIDIGKKNADSLGLR--IDWVCENAFDWLRKKEKEKQKFDLIILDPPsFTKT 307
                    56678888999**********************************************77..8*****************************55554 PP

                    C CS
  Cons_hypoth95 127 l 127
                    +
     CCG93309.1 308 K 308
                    4 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.4   5.3e+03      61     108 ..     142     196 ..     140     205 .. 0.61
   2 !   29.3   0.0   5.4e-10   6.5e-07       3     119 ..     223     353 ..     221     386 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.4
  Methyltransf_31  61 gdiee.leklledekfDlilsnevl....naladpdkile....eiervlkpggill 108
                      g+i + l++l + ++ ++i+ n++       l+  +++l     +i++v  +g  +l
       CCG93309.1 142 GEILDsLQQL-T-SSTNIIVRNDAPvrllEGLPLTKECLAhqapGIFSVTLDGVTIL 196
                      5666656653.3.67888888855444446677777776655666666666555555 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 5.4e-10
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsnevl..naladpdk 92 
                      k++rvlD+ + +G +++  a +    ++ + +D s+ ai   ++na++lgl  +    +++++ l k+  e++kfDli+ + +    +   +++
       CCG93309.1 223 KDKRVLDCFSYQGLFSIFCA-L-QGAKHCIAVDQSAAAIDIGKKNADSLGLR-IDWVCENAFDwLRKKeKEKQKFDLIILDPPSftKTKVQKES 313
                      899*****************.4.45689***********************5.9999999999999998999********94444444444444 PP

  Methyltransf_31  93 ile.......eiervlkpggilliedpr......llaelp 119
                      +++       ++ ++l+ gg+l++  ++       ++el+
       CCG93309.1 314 AFRgyheihlRALNLLELGGYLASFCCShhimmeEWKELI 353
                      4445555555999999999999988888555333333333 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   9.5e-10   1.1e-06      23     137 ..     217     337 ..     205     360 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 9.5e-10
                 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTT.....TSTTS-EEEEEE---STTTCHCHHH CS
         MTS  23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvle.....eveekkfdlivsNPPfhagkatela 116
                 L+ ++ k  +++vlD  +  G+ ++ +a +  + +  +vd++a+A+++ k+n+ + +l+++ v +++++     e e++kfdli+  PP  ++++++++
  CCG93309.1 217 LIANIAK--DKRVLDCFSYQGLFSIFCALQGAK-HCIAVDQSAAAIDIGKKNADSLGLRIDWVCENAFDwlrkkEKEKQKFDLIILDPPSFTKTKVQKE 312
                 6666666..667****************98888.7899*********************888887776422222455789*********6555544443 PP

                 H....HHHHHHHHHHHEEEEEEEEE CS
         MTS 117 v....aeeliaeAkeaLkegGeLli 137
                       +e+   A + L+ gG L  
  CCG93309.1 313 SafrgYHEIHLRALNLLELGGYLAS 337
                 3112258899999999999998865 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.8e-09   2.2e-06       1      70 [.     227     299 ..     227     323 .. 0.80
   2 ?   -2.7   0.0       8.5     1e+04      71      89 ..     337     356 ..     333     357 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.8e-09
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGB....SSSTTTEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedl....pfedgsfDlvvs 70 
                      vLd+   +G +++ +a + g+++ ++vD s++++++ +++a++ gl++++v+ +a d+    + e+++fDl+++
       CCG93309.1 227 VLDCFSYQGLFSIFCALQ-GAKHCIAVDQSAAAIDIGKKNADSLGLRIDWVCENAFDWlrkkEKEKQKFDLIIL 299
                      7888888999******99.69**********************************876332246899*****98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 8.5
                      EST.GGGSSHHHHHHHHHHH CS
  Methyltransf_25  71 sga.lhhlsdedlekalkei 89 
                      s++  hh+  e+++++++++
       CCG93309.1 337 SFCcSHHIMMEEWKELIAKA 356
                      34548888889999988765 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   6.9e-07   0.00083       3      80 ..     226     302 ..     224     310 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.9e-07
  Methyltransf_15   3 vilDlfsGaGGnviqfalv.fekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvflSpP 80 
                       +lD fs  G  +i  al+  ++ ia++ +   + + ++Na + g   +i++v+ + f+ l+k + ek k+dl++l pP
       CCG93309.1 226 RVLDCFSYQGLFSIFCALQgAKHCIAVDQSAAAIDIGKKNADSLG--LRIDWVCENAFDWLRKKEKEKQKFDLIILDPP 302
                      689*******999*9999955789*******************95..69*****************************9 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.5   1.7e+03     177     198 ..      27      48 ..      18      60 .. 0.72
   2 !   15.5   0.0     6e-06    0.0071      34     154 ..     210     336 ..     198     368 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.5
                     .....HHHHHHHHTT-TTEEEE CS
  Methyltransf_3 177 eyravllelnkklaeDprveis 198
                     +yr+ + +++++l++ + ve++
      CCG93309.1  27 VYRTEISHFDEHLQNGDVVEVV 48 
                     5777777777777777777765 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 6e-06
                     HHHHHHHHHHHHHT--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHHHHHHTSSS---EEEEE CS
  Methyltransf_3  34 degqfLslLvklvnakrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekieliegdalkvLeelvkdkklpefDfif 128
                     d++   +l+ ++   krvl+   ++G   +  al+     + +a+d+   a +i++k  +  g   +i+    +a   L +  k+k   +fD+i 
      CCG93309.1 210 DQAANYRLIANIAKDKRVLDCFSYQGLFSIFCALQ--GAKHCIAVDQSAAAIDIGKKNADSLG--LRIDWVCENAFDWLRKKEKEK--QKFDLII 298
                     67777789999***************777777766..55689**************9888766..58************9876666..69****9 PP

                     E-........S-GGG.HHHHHH...HHHHTEEEEEEEE CS
  Methyltransf_3 129 vD........aDkss.yvnyye...klleLvkvGglia 154
                     +D          k+s +  y+e   ++l+L+  Gg +a
      CCG93309.1 299 LDppsftktkVQKESaFRGYHEihlRALNLLELGGYLA 336
                     99444333332343335556652226788898888776 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     4e-06    0.0048      24      61 ..      32      69 ..      20      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4e-06
                EEEEETT--TTSEEEEEETTSCEEEEEEESS-HHHHHH CS
         PUA 24 vvevegdfeegdvVaivdedgelvavGlanysseelak 61
                +  ++++++ gdvV++v+ +g+ ++vG+ n  s+   +
  CCG93309.1 32 ISHFDEHLQNGDVVEVVSANGQNLGVGIWNSQSQISVR 69
                678899**********************9988876555 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.3e-06     0.011     159     231 ..     221     298 ..     208     300 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.3e-06
        PrmA 159 vkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveakleva.....lseellkeekadviv 231
                 + ++++vlD     G+ +i  a+ gak+ +avD    A+++ k+Na+  +++           l ++  +++k+d+i+
  CCG93309.1 221 IAKDKRVLDCFSYQGLFSIFCALQGAKHCIAVDQSAAAIDIGKKNADSLGLRIDWVCEnafdwLRKKEKEKQKFDLII 298
                 5678899**9999*********************************98755544422211111333333457888886 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.7e-05       0.1       8      66 ..     235     298 ..     228     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.7e-05
                      SHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.TS...S-TT-EEEEE CS
  Methyltransf_11   8 Grlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaek.lp...fednsfDlvv 66 
                      G+++  +a +g +++++vD s++++++ k++a   gl++++v+++a + l     e+++fDl++
       CCG93309.1 235 GLFSIFCALQGaKHCIAVDQSAAAIDIGKKNADSLGLRIDWVCENAFDwLRkkeKEKQKFDLII 298
                      6666667777889*********************************986431224446899887 PP

>> UPF0113  UPF0113 PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1    0.0001      0.12      18      55 ..      27      64 ..       9      83 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0001
     UPF0113 18 vlkesilkitesvkenqvvvVlnengeplGiGkirkdt 55
                v++++i  ++e++++++vv V++ ng+ lG+G+++ ++
  CCG93309.1 27 VYRTEISHFDEHLQNGDVVEVVSANGQNLGVGIWNSQS 64
                78899999**************************6533 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.8e-05     0.082      79     164 ..     249     337 ..     219     365 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.8e-05
                 EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG.--...STTS---EEEE---------.-HHHHHHHHHHHHHHHHHH-TT..-EEE CS
     UPF0020  79 lygsDldrrvvqgareNaekagvgdliefsqadaak.Lr...lkegevdvivtnpPYGerlg.skkalekLYseflrelkrvlrgggrlvl 164
                  +++D  +++++ +++Na + g+   i++++ +a + Lr   ++++++d+i+ +pP   +++ +k++  + Y+e+  ++ + l+ gg l++
  CCG93309.1 249 CIAVDQSAAAIDIGKKNADSLGLR--IDWVCENAFDwLRkkeKEKQKFDLIILDPPSFTKTKvQKESAFRGYHEIHLRALNLLELGGYLAS 337
                 799****************98876..555555554426666555669*********55555514444467777777777777776666655 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00027      0.32      29     100 ..     243     314 ..     218     360 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00027
                      HTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC...EEEEEEEE--CCGGGTTT-TC CS
  Methyltr_RsmB-F  29 lmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.elfDriLlDaPCsgtgvirrdpd 100
                      l + +++ +Avd+++  ++  ++n   Lg++   v+e       k   + ++fD i+lD P  +   ++++ +
       CCG93309.1 243 L-QGAKHCIAVDQSAAAIDIGKKNADSLGLRIDWVCENAFDWLRKKEKEkQKFDLIILDPPSFTKTKVQKESA 314
                      4.6678889**********************777777655544444333389********9877777777665 PP

>> N6-adenineMlase  Probable N6-adenine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00022      0.26      82     122 ..     287     341 ..     275     377 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
  N6-adenineMlase  82 peelkgkfdviviDPP.Flseeclkklaktaklllk...............klilct 122
                      +e+ k+kfd+i++DPP F   +++k+   + + + +                  +c+
       CCG93309.1 287 KEKEKQKFDLIILDPPsFTKTKVQKE--SAFRGYHEihlralnllelggylASFCCS 341
                      456699**********4444555554..22222222333344455566655334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3070.22
//
Query:       CCG93310.1  [L=812]
Description: phosphoenolpyruvate synthase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.1e-121  405.2   0.0   3.4e-121  404.5   0.0    1.3  1  PPDK_N           Pyruvate phosphate dikinase, PEP/pyruvate bi
    1.5e-63  214.7   0.2    2.3e-63  214.1   0.2    1.2  1  PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
      1e-24   86.0   0.2    2.8e-24   84.6   0.2    1.8  1  PEP-utilizers    PEP-utilising enzyme, mobile domain
  ------ inclusion threshold ------
      0.025   14.3   0.9      0.025   14.3   0.9    1.8  2  RPAP1_N          RPAP1-like, N-terminal


Domain annotation for each model (and alignments):
>> PPDK_N  Pyruvate phosphate dikinase, PEP/pyruvate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.5   0.0  7.7e-125  3.4e-121       2     317 ..      27     357 ..      26     365 .. 0.98

  Alignments for each domain:
  == domain 1  score: 404.5 bits;  conditional E-value: 7.7e-125
      PPDK_N   2 elvGGKganLael...lneagipvPpgfaitadafrefleengleekideelkeldvddvdelrkaskeirelilsaelPeeleeaikeayeelgkkfg 97 
                 +lvGGK+a+L+e+   l+++gi+vP+gfa+ta+a+r fl+en lee+i+e+l+ ld +d+++lr+++++ir+li+++++P+ele++i +ay+ l+k+++
  CCG93310.1  27 PLVGGKNASLGEMyshLSSKGIKVPNGFATTAEAYRFFLSENRLEEEIKELLSGLDPHDLENLRDRGRKIRALIIDSPMPKELENEIIDAYAILNKEAK 125
                 69***********9998899******************************************************************************* PP

      PPDK_N  98 deelpvaVRSSataEDlpkasfaGqqdtyLnvggeeevleaikavfaSlfnerAilYrkekgldheevalavvvqkmvnsdlgasGVafsldpetGfkd 196
                 + +++vaVRSSataEDlp asfaGqq+tyLnv+g++++l++ik++faSlf++rAi+Yr + g++h +val+v+vq+mv+sdl+ sGV+fs+d+e+Gf++
  CCG93310.1 126 QPAVDVAVRSSATAEDLPGASFAGQQETYLNVRGKDNLLHSIKKCFASLFTDRAISYRSDMGFEHTKVALSVGVQRMVRSDLACSGVMFSIDTESGFHN 224
                 *************************************************************************************************** PP

      PPDK_N 197 evlinasyGlGeaVVaGrvtpdefvvekstrk.....ilekkigekeikivydekeeg.tkevevpeeereklaLsdeeveeLaeiakkiekhyg.... 285
                 +vlin+syGlGe++V+G+v+pdef+v+k+t       il+k++g ke+k+vyd  +e+ +k+++vp eer+k++Lsdee+ +La++a  +e+hy+    
  CCG93310.1 225 AVLINSSYGLGENIVQGIVNPDEFYVFKPTLMqgfqpILQKRLGGKEMKLVYDIGGEKiVKNIPVPPEERKKFSLSDEEILTLAKWACIVEEHYSqlng 323
                 ******************************9999***************************************************************** PP

      PPDK_N 286 ..tpmdiEfaideeegklyllQaRpetrtsekke 317
                   tpmd+E+a+d+ +g+l++lQaRpet+++ k+ 
  CCG93310.1 324 rfTPMDMEWAKDGLSGELFMLQARPETVHGGKER 357
                 ****************************987654 PP

>> PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.1   0.2   5.1e-67   2.3e-63      17     289 ..     494     801 ..     483     806 .. 0.88

  Alignments for each domain:
  == domain 1  score: 214.1 bits;  conditional E-value: 5.1e-67
                      CXBCEEEEEESSCHHHHHHHHCTXSSEEEEEHHHHCTTSCC..HHHHHH..............................HHHHHHHHHHHTTTS CS
  PEP-utilizers_C  17 gkkikvlaNidtpedaekalengaeGiGLlRtEflfmaree..lpteee..............................qaeaykkvleamngr 78 
                        ++k+++N+++pe+a      + +G+GL R Ef+ ++  +  + ++                                +ae +  +++a++++
       CCG93310.1 494 RPRTKIMMNVGNPEEAFDLSFLPNDGVGLAREEFILTNYVRihPMALVHfdqlkegedkkkiiemteiypkktdffvekLAEGIGMIAAAFYPK 587
                      5689********************************9997732333334888****************************************** PP

                      EEEEEXXXSSCC..GGSGGC.HHHH.XSXGGGSSXTHHHHCCS..HHHHHHHHHHHHHHCC.CC..EEEEEESSXXSHHHHHHHHHHHHHH.HH CS
  PEP-utilizers_C  79 pvvvRtlDiggd..kelpel.keepeevNPmlGfRgirlglse..pelfetqlrAllrasa.ag..kleimlPmvasveeleeakkiieev.ke 163
                       v+vR+ D++++   +l  + + ep e+NPm+GfRg +++ +   +e f  + +A+ ra++ +g  ++++m+P+v++vee +   k+i+e+ k+
       CCG93310.1 588 DVIVRLSDFKTNeyANLIGGqDFEPIERNPMIGFRGASRYYNPryQEGFALECQAIRRAREtFGlfNIKVMVPVVRTVEEGK---KVIAEMeKN 678
                      ************44345454356799***********999976669***************63367***********99854...444444033 PP

                      HHHHCTCTXXTTXEEEEEEXSHHHHHTHHHHCTTSSEEEEXHHHHHHHHHTXXCCCHCHHHHSXTTTCHHCCCHHHHHHHHHHCCXEEEEESCC CS
  PEP-utilizers_C 164 elekegvkkkkkvkvGiMiEvpsaalladklakevdFfSiGtNDLtQytlavdRdneevaklydplepavlrlikevikaaeekglkvgiCGel 257
                       l+k     +k++++ +M E+ps ++la+++ +  d+fSiG+NDLtQ++l+vdRd+e va lyd+ + av+r+i++vi++a++k++k+giCGe+
       CCG93310.1 679 GLKKG----EKGLEIYMMCEIPSNVILAEEFSEIFDGFSIGSNDLTQLVLGVDRDSEIVASLYDERNEAVKRMISSVIRTAKQKQKKIGICGEA 768
                      44444....899********************************************************************************** PP

                      CC.SCCCHHHHHHCTXSEEEEXGGGHHHHHHHH CS
  PEP-utilizers_C 258 ag.dpsavellvglGldelSmsaasvpaaraal 289
                      ++ +p+ +e+lv+ G+d+lS+sa+ v+++   +
       CCG93310.1 769 PSnYPEFAEFLVKEGIDSLSLSADVVIKTTLSI 801
                      *989*********************99887665 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.2   6.2e-28   2.8e-24       2      73 .]     399     470 ..     398     470 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 6.2e-28
                    --S-EEEEES---HHHHTTS-GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.HH--TEEEEEETTTT CS
  PEP-utilizers   2 leegvILvaeetspsdiagldkaaGivterGGmtSHaAivArelgiPaVvgvgeatielkegdlitvDgstG 73 
                    +e+g+ILv+e+t+p++ + ++ka++ivt+rGG+t+HaAiv+relg+Pa+vg++  t+ lk+g ++tv +++G
     CCG93310.1 399 FEPGEILVTEKTDPDWEPIMKKARAIVTNRGGRTCHAAIVSRELGVPAIVGTERGTEILKDGMIVTVSCAEG 470
                    789*****************************************************99999********998 PP

>> RPAP1_N  RPAP1-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.9   5.6e-06     0.025      15      44 ..      66      95 ..      65      96 .. 0.89
   2 ?   -3.5   0.0       2.1   9.4e+03      13      20 ..     298     305 ..     298     306 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.6e-06
     RPAP1_N 15 speEIeeereeLlesLdPkllefLlkRank 44
                s+   eee +eLl+ LdP  le L+ R++k
  CCG93310.1 66 SENRLEEEIKELLSGLDPHDLENLRDRGRK 95
                556679*********************986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.1
     RPAP1_N  13 sMspeEIe 20 
                 s+s+eEI+
  CCG93310.1 298 SLSDEEIL 305
                 689****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 5625.63
//
Query:       CCG93311.1  [L=913]
Description: Acyl-CoA synthetase (ADP forming) alpha and beta chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-75  251.4   0.0    1.3e-74  250.5   0.0    1.4  1  ATP-grasp_5      ATP-grasp domain
      3e-52  176.1   0.1    4.8e-52  175.4   0.1    1.3  1  Succ_CoA_lig     Succinyl-CoA ligase like flavodoxin domain
    1.6e-22   80.2   0.0    4.9e-22   78.6   0.0    1.9  2  CoA_binding_2    CoA binding domain
    2.6e-09   37.6   0.0    9.5e-09   35.8   0.0    2.0  1  CoA_binding      CoA binding domain
      6e-09   36.7   0.0    1.2e-08   35.7   0.0    1.5  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    4.2e-06   26.5   0.1    9.5e-06   25.3   0.0    1.6  2  ATP-grasp_2      ATP-grasp domain
     0.0002   21.6   1.3    0.00057   20.1   0.1    2.4  3  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.038   14.4   0.0       0.14   12.6   0.0    1.9  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
      0.048   13.8   0.3       0.11   12.7   0.3    1.5  1  DUF3760          Protein of unknown function (DUF3760)
      0.055   13.4   0.0       0.15   12.0   0.0    1.6  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
       0.14   11.6   0.0       0.28   10.7   0.0    1.4  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi


Domain annotation for each model (and alignments):
>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.5   0.0   7.7e-78   1.3e-74       3     222 .]     491     710 ..     489     710 .. 0.98

  Alignments for each domain:
  == domain 1  score: 250.5 bits;  conditional E-value: 7.7e-78
  ATP-grasp_5   3 laegrtlLteaeakelleaygipvvetrlassaeeaveaaeeigypvvlKivspdilhKtdvgGvrlnlkdaeevraaaeeilervkekspeariegv 100
                  +++++tlLte+++ke+l+ ygi v et la++++ea+++aeeigypvv K+ s +i+hK+dvgGv l+++d++++++a+++i+++  +++ e+ +eg+
   CCG93311.1 491 KEKNQTLLTEYQSKEILRFYGIGVNETFLAKNEQEALSIAEEIGYPVVAKLNSTKISHKSDVGGVILGISDKASLEKAFRKIRDNTIKHASESAFEGI 588
                  56789********************************************************************************************* PP

  ATP-grasp_5 101 lVqemakrggrElivgvteDpvFGpvilfGlGGtavevlkdvavalpplnstlareliertkaskllkgvrgekkadlaaleellvrlsqLvvdlpeI 198
                  ++q+m   +g+Eli+g t+Dp+FGpv+lfG GG+ ve++kd a+alppl++tl   liertk+ k+l g+rg +++d+++l e+lvr+s+L+v   +I
   CCG93311.1 589 SIQRMISEKGIELILGGTTDPQFGPVMLFGSGGMFVEIYKDNALALPPLTTTLSSILIERTKIEKALHGFRGIPPVDMRKLNETLVRFSELLVYETRI 686
                  *****777****************************************************************************************** PP

  ATP-grasp_5 199 reldinPllveeegvvalDarirl 222
                  +e+dinPllv+++ v+alDari+l
   CCG93311.1 687 KEIDINPLLVYGSMVIALDARIVL 710
                  **********************86 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.4   0.1   2.9e-55   4.8e-52       2     138 .]     162     298 ..     161     298 .. 0.99

  Alignments for each domain:
  == domain 1  score: 175.4 bits;  conditional E-value: 2.9e-55
  Succ_CoA_lig   2 GkialisqSGalalalldwaasrglgfskvvslGneadvdvadlleylaedpetkvillylEsirdgrkflsaarraarkkpvvvlksGrseagara 98 
                   G+ia++sqSGal++a+ldw+ sr++gfs + slG+ advd++d+l ylaed  t+vil+y+Esi+d+++flsaar+++ +kp++vlk+Grs++g++a
    CCG93311.1 162 GHIAFLSQSGALGAAVLDWSLSRDIGFSAFFSLGSLADVDWGDILFYLAEDHLTRVILIYMESIGDPASFLSAARQLNFQKPILVLKAGRSKEGSQA 258
                   89*********************************************************************************************** PP

  Succ_CoA_lig  99 aashtgalagsdavvdaafrqaGvlrvdsleelfdaaell 138
                   a shtg+++gsdav+daaf ++Gvlrvds++e+f++a+++
    CCG93311.1 259 ALSHTGSMTGSDAVLDAAFLRTGVLRVDSFSEFFSLASFF 298
                   ***********************************99875 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.0     3e-25   4.9e-22       1     115 [.      21     145 ..      21     146 .. 0.96
   2 ?   -2.6   0.0       4.7   7.7e+03      89     107 ..     521     539 ..     484     548 .. 0.78

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 3e-25
                    --EEEET--S-TTSHHHHHHHHHHHHT--EEEESSS-SEETTEES----T....T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT........ CS
  CoA_binding_2   1 rtiaVvGasdnpgkfgykvlryllehglpvvpVnpkeeeilgekvyaslaedpepvdlvdvftppeatpeivkealalgakavwlqpg........ 88 
                    +++a++Gas++p + g+ ++++l + g   +pVnp+++ei+g+k+y+++++ p+ +dl+ ++tp+ ++p+i+++++ + +k++++ ++        
     CCG93311.1  21 KRVALIGASEQPFSVGRALMENLIKWGGIFYPVNPNHTEIFGRKSYPTIKDIPSSIDLAIIATPAITVPQIIEDCVHASVKGAVIISAgfkeiget 116
                    689**********************887**********************868****************************99999999******* PP

                    ..---HHHHHHHHHTT-EEE.ES-HHHHH CS
  CoA_binding_2  89 ..sedeeaaelaeeagirvvgdrCilveg 115
                        +++++e a++ g+r++g++C+++++
     CCG93311.1 117 grLLEQKIVETARRGGLRIIGPNCVGIML 145
                    **************************986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.7
                    ---HHHHHHHHHTT-EEE. CS
  CoA_binding_2  89 sedeeaaelaeeagirvvg 107
                      ++ea+++aee g +vv 
     CCG93311.1 521 KNEQEALSIAEEIGYPVVA 539
                    5678999999998888774 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   5.8e-12   9.5e-09       4      96 .]      21     109 ..      19     109 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 5.8e-12
                  EEEEEETTTSHHHHHH.HHHHHHHHECEEEEEEC-TTTTTCEETTEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEEEEESST CS
  CoA_binding   4 tkviviGagglgiagl.yhfkeklkygikavfgvnprkvgtevlglpvyksvdeleektevdvavitvPaesaqeavdelveagikgiviiteg 96 
                  ++v++iGa+ +   ++   +++ +k    + ++vnp+   te+ g + y+++++++ +  +d a+i++Pa  + ++++++v+a++kg+vii++g
   CCG93311.1  21 KRVALIGASEQPFSVGrALMENLIKW-GGIFYPVNPN--HTEIFGRKSYPTIKDIPSS--IDLAIIATPAITVPQIIEDCVHASVKGAVIISAG 109
                  78999999999777775555555553.3589******..*******************..*******************************986 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   7.3e-12   1.2e-08       2     138 .]     744     886 ..     743     886 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 7.3e-12
  Acetyltransf_3   2 LlLrplteeDlealfel...rsdpevmry.lpepltleeaeewlera...waeeseeegygwaivl........kdtgviGsvglrdleeedeea 81 
                     +l+rp+++eD + ++e+   +s++ v  y + ++l+ ee  + l+ +   +      ++y+  ivl        ++ ++iG+ +l ++++ ++ a
      CCG93311.1 744 VLIRPIRPEDEPLMVEFhkgLSQESVY-YrYFQNLSFEERVDHLRLSricF------SDYNIEIVLvaqilaadEPREIIGVGRLGKFHGFEG-A 830
                     689*******66668875556666655.34445677777766666323233......5566555433445544333336************99.* PP

  Acetyltransf_3  82 elgymlapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     e+ ++++++++ kG++t  +r l e+  +e  l++++ ++ + Ne + +++ k Gf+
      CCG93311.1 831 EFAIIIQDQWQHKGLGTLLLRKLKEIGLKEK-LSWIIGRMLPLNESMKKIADKEGFT 886
                     ***************************8888.***********************96 PP

>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   5.8e-09   9.5e-06       2      96 ..     498     594 ..     497     632 .. 0.78
   2 ?   -3.1   0.0         3   4.8e+03     171     201 ..     664     695 ..     639     696 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 5.8e-09
                  E-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTSSSEEEE.E--SSSTCCCTTCEEE.ESSHHHHHHHHHCCTTSEEE-T.TS-TT-EEE--EE CS
  ATP-grasp_2   2 lhEyqakeilakygvkvpegevaesaeeaeeaakklgekelvvK.aQvlaGGRGKagGvkl.vkskeeakeaakellgkelvtk.qtgkeGkkvekvl 96 
                  l Eyq+keil+ yg+ v+e+++a++++ea ++a+++g  + v K    ++  +   gGv l +++k  +++a +++  ++++    +  eG  +++++
   CCG93311.1 498 LTEYQSKEILRFYGIGVNETFLAKNEQEALSIAEEIGYPV-VAKlNSTKISHKSDVGGVILgISDKASLEKAFRKIRDNTIKHAsESAFEGISIQRMI 594
                  78***********************************999.666245677777777887663666777777777777777763213444566666655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3
                  HHHHHHHHHHHHHHHHHH.HTTEEEEEEEEEE CS
  ATP-grasp_2 171 elvkkaakiikklyklfv.eldatlvEiNPLv 201
                    ++k+ +++++  +l+v e+  + ++iNPL 
   CCG93311.1 664 VDMRKLNETLVRFSELLVyETRIKEIDINPLL 695
                  55667777788887766526678899999996 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.9   4.8e+03      77      88 ..      35      46 ..      34      47 .. 0.91
   2 ?   -3.4   0.1       6.9   1.1e+04      78      95 ..     117     134 ..     117     136 .. 0.85
   3 !   20.1   0.1   3.5e-07   0.00057      26      92 ..     791     860 ..     768     875 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.9
                    HHHHHHHHHHHH CS
  Acetyltransf_1 77 lGsaLlealeer 88
                    +G+aL+e l+++
      CCG93311.1 35 VGRALMENLIKW 46
                    79********98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.9
                     HHHHHHHHHHHHHHTTES CS
  Acetyltransf_1  78 GsaLlealeerareegik 95 
                     G++L ++++e ar+ g++
      CCG93311.1 117 GRLLEQKIVETARRGGLR 134
                     789999*******99986 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 3.5e-07
                     HHHHSTTCEEEE......EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT CS
  Acetyltransf_1  26 esfsleaegllv......aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree 92 
                     + fs+ + ++++      a e  e+iG  +l k       +++   + +  ++++kGlG++Ll++l e+ ++e
      CCG93311.1 791 ICFSDYNIEIVLvaqilaADEPREIIGVGRLGKFHG---FEGAEFAIIIQDQWQHKGLGTLLLRKLKEIGLKE 860
                     334444443333235332333366**********99...899999**********************998877 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       9.6   1.6e+04      41      48 ..      35      43 ..      34      57 .. 0.70
   2 ?   12.6   0.0   8.5e-05      0.14       5      49 ..     806     854 ..     797     885 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9.6
                    HHHHHHH.H CS
  Acetyltransf_7 41 iGraLle.a 48
                    +GraL+e +
      CCG93311.1 35 VGRALMEnL 43
                    799999843 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 8.5e-05
                     EEEEEETTEEEEEEEEEEES...TCTEE..EEE-GGGTTSSHHHHHHHH.T CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld...aeitr..laVdpeyrgkGiGraLlea.a 49 
                     ++ a++  +i+G  +l       +   +  + +  +++ kG+G+ Ll+  +
      CCG93311.1 806 ILAADEPREIIGVGRLGKFHgfeGA--EfaIIIQDQWQHKGLGTLLLRKlK 854
                     4434444889998888888764333..24699***************9522 PP

>> DUF3760  Protein of unknown function (DUF3760)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   6.7e-05      0.11       5      31 ..     767     793 ..     765     795 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.7e-05
     DUF3760   5 apVwdlildeLsrlrPltyllLSrfhY 31 
                 ++V+++ +++Ls ++++  l+LSr ++
  CCG93311.1 767 ESVYYRYFQNLSFEERVDHLRLSRICF 793
                 79**********************987 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     9e-05      0.15      32      79 ..     805     856 ..     796     865 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9e-05
  Acetyltransf_10  32 lllvaeeggkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveee 79 
                      ++l+a+e  +i+Gv++l + ++       ++++++++++G+g+ Ll +++e 
       CCG93311.1 805 QILAADEPREIIGVGRLgKFHGfegAEFAIIIQDQWQHKGLGTLLLRKLKEI 856
                      67899999*********555557654445699***************99986 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00017      0.28      21      44 ..     519     540 ..     502     587 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
                  CSSBSSHHHHHHHHHHH-SSEEEE CS
  CPSase_L_D2  21 aapvetleealaiakeigyPviik 44 
                     +++++eal+ia+eigyPv+ k
   CCG93311.1 519 L--AKNEQEALSIAEEIGYPVVAK 540
                  3..499***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 6274.19
//
Query:       CCG93312.1  [L=292]
Description: Chromosome (Plasmid) partitioning protein,ParB/Spo0J family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-27   94.3   1.2      1e-26   93.1   1.2    1.7  1  ParBc            ParB-like nuclease domain
    8.1e-19   67.2   1.3    1.5e-18   66.3   0.1    2.1  2  HTH_ParB         HTH domain found in ParB protein
    0.00085   19.3   0.0     0.0065   16.5   0.0    2.4  2  HTH_3            Helix-turn-helix
     0.0018   18.3   0.1       0.17   11.9   0.0    2.6  2  KorB             KorB domain
     0.0028   17.4   0.9     0.0077   16.0   0.0    2.1  3  HTH_23           Homeodomain-like domain
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.076   12.8   0.0    2.2  2  HTH_38           Helix-turn-helix domain
      0.026   14.5   0.4      0.088   12.8   0.3    2.1  1  HTH_Crp_2        Crp-like helix-turn-helix domain
       0.03   14.7   0.1      0.062   13.6   0.1    1.6  1  HTH_31           Helix-turn-helix domain
      0.049   13.5   0.0       0.14   12.0   0.0    1.9  1  TrmB             Sugar-specific transcriptional regulator Trm
      0.061   13.7   2.3       0.16   12.4   2.3    1.7  1  Latarcin         Latarcin precursor
      0.074   12.4   0.1       0.13   11.7   0.1    1.3  1  Gamma_PGA_hydro  Poly-gamma-glutamate hydrolase
      0.085   12.9   0.1       0.26   11.3   0.1    1.8  1  HTH_29           Winged helix-turn helix
       0.13   11.9   0.1        0.4   10.3   0.1    1.9  1  HTH_50           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> ParBc  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   1.2   7.3e-30     1e-26       3      89 ..      35     122 ..      33     123 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 7.3e-30
       ParBc   3 vplseirpnplqprkd.spekieelvasIkkkGllqPiivrktrqgryeiiaGerRlrAakrlglkevpvivleiddeeamalslien 89 
                 +++++i pnp+qprk   +e++eel +sIk+kGllqP+ivr+ +++++e+iaGerR+r a r+gl+++p+i++ ++d++ ++++l en
  CCG93312.1  35 IKVDRISPNPYQPRKViREEELEELTQSIKEKGLLQPVIVRQQKENQFELIAGERRWRSAIRAGLETIPAIIRRASDNDLIEIALMEN 122
                 899**********************************************************************************999 PP

>> HTH_ParB  HTH domain found in ParB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       1.8   2.5e+03      26      41 ..      53      68 ..      50      68 .. 0.79
   2 !   66.3   0.1   1.1e-21   1.5e-18       2      50 ..     174     222 ..     173     224 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.8
    HTH_ParB 26 eelqlqlaekiieegL 41
                ee+ ++l + i e+gL
  CCG93312.1 53 EEELEELTQSIKEKGL 68
                5788899999998887 PP

  == domain 2  score: 66.3 bits;  conditional E-value: 1.1e-21
    HTH_ParB   2 evqeavsegkiseGHARaLlslkdeelqlqlaekiieegLsVRetEklv 50 
                 +vq+++++g +s GH+++L++l+d e q+++aeki++eg+sVR+tE+ v
  CCG93312.1 174 PVQDLIEKGSLSQGHGKVLVGLTDREMQEKVAEKIVKEGWSVRKTEEFV 222
                 79********************************************988 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.7e-06    0.0065       5      27 ..     141     163 ..     138     165 .. 0.91
   2 ?   -1.7   0.0       2.2   3.1e+03      31      49 ..     268     286 ..     268     290 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.7e-06
                 HHHTTHHHHHHHHHHTSSHHHHH CS
       HTH_3   5 RkqlglsqeeLAeklGvsrstis 27 
                 +++ gl+qe +A++lG sr+t++
  CCG93312.1 141 MEKFGLTQEVVAQRLGKSRATVA 163
                 6899*****************97 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.2
                 TTSSCSBHHHHHHHHHHHT CS
       HTH_3  31 nGernPsletlkklakaLg 49 
                 +G+ +++ + ++ l ++Lg
  CCG93312.1 268 SGKIEITFRSIQDLHRVLG 286
                 5899999999999999998 PP

>> KorB  KorB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.032        44      23      54 ..      96     126 ..      88     147 .. 0.78
   2 !   11.9   0.0   0.00012      0.17       3      40 ..     145     182 ..     143     231 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.032
        KorB  23 ylklldvpdylrelydseviadirtLyeLrra 54 
                 ++ l  +p+ +r ++d+++i+ i ++ +L+r 
  CCG93312.1  96 RAGLETIPAIIRRASDNDLIE-IALMENLQRS 126
                 5667889***********985.9999999886 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00012
        KorB   3 gvkqadIAkaLGksksfvslylklldvpdylrelydse 40 
                 g++q+ +A++LGks++ v+  l ll + + +++l++++
  CCG93312.1 145 GLTQEVVAQRLGKSRATVANTLRLLTLSQPVQDLIEKG 182
                 789999****************************9987 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.3       4.3   5.9e+03      35      46 ..      89      99 ..      89     100 .. 0.70
   2 !   16.0   0.0   5.6e-06    0.0077      13      40 ..     140     168 ..     138     177 .. 0.87
   3 ?   -2.9   0.0       4.9   6.7e+03      15      22 ..     210     217 ..     207     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.3
      HTH_23 35 yrwlkryreeGl 46
                +rw+++  + Gl
  CCG93312.1 89 RRWRSAI-RAGL 99
                6999987.4766 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 5.6e-06
      HTH_23  13 llae.GlsvreIAreLgvsrrTvyrwlkr 40 
                 +  + Gl+++ +A++Lg sr Tv + l+ 
  CCG93312.1 140 MMEKfGLTQEVVAQRLGKSRATVANTLRL 168
                 55668*******************99885 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.9
      HTH_23  15 aeGlsvre 22 
                 +eG+svr+
  CCG93312.1 210 KEGWSVRK 217
                 679*9986 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.5e-05     0.076      20      42 ..     145     167 ..     140     167 .. 0.91
   2 ?   -0.9   0.0         1   1.4e+03      14      25 ..     206     217 ..     201     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.5e-05
      HTH_38  20 GlslreIArrLgrspsTIsRElk 42 
                 Gl++  +A+rLg+s+ T+++ l+
  CCG93312.1 145 GLTQEVVAQRLGKSRATVANTLR 167
                 899999************99776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1
      HTH_38  14 erllaeGlslre 25 
                 e+  +eG+s+r+
  CCG93312.1 206 EKIVKEGWSVRK 217
                 56679*****97 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   6.4e-05     0.088      19      45 ..     143     169 ..     118     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.4e-05
                 EEEHHHHHHHHHTTSSHHHHHHHHHHH CS
   HTH_Crp_2  19 elpltqeelAsmlGltretvsrilseL 45 
                 ++ ltqe  A++lG +r tv  +l+ L
  CCG93312.1 143 KFGLTQEVVAQRLGKSRATVANTLRLL 169
                 5789********************977 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   4.5e-05     0.062      13      32 ..     138     163 ..      89     167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.5e-05
      HTH_31  13 a......GLsqeevAerlgvsestls 32 
                 a      GL+qe vA+rlg s++t+ 
  CCG93312.1 138 AlmmekfGLTQEVVAQRLGKSRATVA 163
                 1555555****************986 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0001      0.14      10      46 ..     133     169 ..     123     181 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
                 CCCHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHH CS
        TrmB  10 EakvYlaLlklgpatadeiaeelgvprskvYevLrsL 46 
                 Ea+ Y+ ++++  +t + +a++lg +r++v ++Lr L
  CCG93312.1 133 EARGYALMMEKFGLTQEVVAQRLGKSRATVANTLRLL 169
                 89********************************977 PP

>> Latarcin  Latarcin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.3   0.00011      0.16       9      76 ..      51     150 ..      45     155 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
    Latarcin   9 leaeeLdele..................rgainrklmemvnnlRkvqgR.................................Leem..venlrkvedle 54 
                 + +eeL+el                   +                                                     L e+  +enl+ + dl+
  CCG93312.1  51 IREEELEELTqsikekgllqpvivrqqkE-------------------NqfeliagerrwrsairagletipaiirrasdndLIEIalMENLQ-RSDLN 129
                 55677777773333333333333333330...................134444444555555556666666666666666744431159***.9**** PP

    Latarcin  55 dtEEARgafkklkdkfkkmgek 76 
                  +EEARg ++ + +kf   +e 
  CCG93312.1 130 PIEEARG-YALMMEKFGLTQEV 150
                 *******.88888888666555 PP

>> Gamma_PGA_hydro  Poly-gamma-glutamate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   9.3e-05      0.13     104     135 ..     189     220 ..     180     242 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.3e-05
  Gamma_PGA_hydro 104 ehvlvGGtdrelaekiveaLeeaGfsvelape 135
                       +vlvG tdre++ek++e++ ++G+sv++++e
       CCG93312.1 189 GKVLVGLTDREMQEKVAEKIVKEGWSVRKTEE 220
                      689************************77666 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00019      0.26       6      35 ..     138     168 ..     134     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
      HTH_29   6 lllaeGvs.tvsqiAkllglsrrtvyrwlkr 35 
                 +l+ e  + t   +A++lg sr tv ++l++
  CCG93312.1 138 ALMMEKFGlTQEVVAQRLGKSRATVANTLRL 168
                 55666666699*****************987 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00029       0.4      29      46 ..     151     168 ..     149     172 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00029
      HTH_50  29 lAkrLGvShtaianklrk 46 
                 +A+rLG S +++an lr 
  CCG93312.1 151 VAQRLGKSRATVANTLRL 168
                 8*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2246.77
//
Query:       CCG93313.1  [L=600]
Description: DNA mismatch repair protein mutL [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-32  111.2   0.0    4.2e-32  110.3   0.0    1.5  1  DNA_mis_repair  DNA mismatch repair protein, C-terminal domai
      7e-29  100.5   0.4    2.5e-28   98.7   0.2    1.9  2  MutL_C          MutL C terminal dimerisation domain
    6.2e-11   42.3   0.1    1.1e-10   41.4   0.1    1.4  1  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
    4.7e-06   27.1   0.1    4.7e-05   23.9   0.1    2.5  2  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
  ------ inclusion threshold ------
      0.048   13.6   0.3      0.098   12.6   0.3    1.5  1  Sec7_N          Guanine nucleotide exchange factor in Golgi t


Domain annotation for each model (and alignments):
>> DNA_mis_repair  DNA mismatch repair protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.0   1.2e-35   4.2e-32       2     115 ..     211     324 ..     210     328 .. 0.96

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 1.2e-35
                     HHHHHHHHHCCEEEEEEEETTEEEEEEEE-CCG-BTTGGEEEEEETTEEE--HHHHHHHHHHHHCCSSSSSB-EEEEEEEESSGGEE-TSSTT-- CS
  DNA_mis_repair   2 aavlgkevaenlleiekeeeqlkieGfiskpelsrskrdkqflfvNgRlvkskelkkaireaYkellpkgrypvvvLnleidpeevDvNvhPtKr 96 
                      +vlg++ a++ll ieke e++ki G iskp + r +r+ +f+fvN+R+v+sk+++  + +aY++ l+kg yp++vL+ e++p+e+DvNvhPtK+
      CCG93313.1 211 CSVLGETWAKELLWIEKEGEGFKIYGAISKPGVGRPSREDMFFFVNKRPVESKSFSLGVFDAYRNSLMKGLYPLCVLFAEVSPDEIDVNVHPTKK 305
                     579******************************************************************************************** PP

                     --EETTHHCHHHHHHHHHH CS
  DNA_mis_repair  97 eVrfqdeeevieaieealk 115
                     eVrf++e + ++++++ l 
      CCG93313.1 306 EVRFKREYAFRNFVNQVLL 324
                     *************999875 PP

>> MutL_C  MutL C terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.59   2.1e+03      36      67 ..     315     346 ..     310     348 .. 0.81
   2 !   98.7   0.2   6.9e-32   2.5e-28       5     145 ..     401     543 ..     399     545 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.59
                 HHHHHHHCCHSSB-EEEEEEEEEEE--HHHHH CS
      MutL_C  36 yeklkeqlkeeelksQpLliPlvlelspeeaa 67 
                 +  + +q+  ++lk Q   +P +++++++e +
  CCG93313.1 315 FRNFVNQVLLDGLKFQGISVPSSFSFEKKEQN 346
                 556677777888999***********999875 PP

  == domain 2  score: 98.7 bits;  conditional E-value: 6.9e-32
                 EEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHCCHSSB-EEEEEEEEEEE--HHHHHHHHHCHHHHHHCT-EEEE-STTEEEEEEEECCCTTT CS
      MutL_C   5 algqvhgtyilaenedglvlvDqhaAherilyeklkeqlkeeelksQpLliPlvlelspeeaalleehkeeLaklGfeleefgpnslivravPallrqq 103
                 ++g + + yi +e ++g+ ++DqhaAher+l+ek+ eq+++ + ++Q+Ll+P+ ++ls+ ea++l++  + ++ lGfe+++ g  s+ ++a+P+ ++ +
  CCG93313.1 401 IVGLFSSLYIAVEIKEGILIIDQHAAHERVLFEKMIEQFHASQKQAQKLLTPILITLSATEAEILSNSLSFFEDLGFEIRSLGISSFLLEAIPSGIKRT 499
                 6899*********************************************************************************************** PP

                 SHHHHHHHHHHHHCCCSS..-H-HCCHHHHHHHHCTTSSSSSS- CS
      MutL_C 104 nleelirelleelaekgk..esleekleellatmachssvkagr 145
                 + e  +re+l el e ++  ++     ++ +a   c+++vk g+
  CCG93313.1 500 DYEMFLREVLLELVELERhkKTARPYWQRDIALSVCKKAVKSGD 543
                 *************9999875557888999999999*****9987 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.1   3.1e-14   1.1e-10       4     106 ..      26     128 ..      22     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 3.1e-14
  HATPase_c_3   4 ekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakrkstslGkkGi.GlklAslslgkkltvitkkegess 99 
                   ++l el++Ns+dA a+++++e     g  + i+++DdG Gms+e+    l r ats+ ++ ++   l  +G+ G    ++ + +k+++ t ++g+s 
   CCG93313.1  26 ASVLKELIENSIDAGATQIDVETRS--GGISWIKVKDDGCGMSREDAFLSLeRHATSKISSLSDFSRLTTYGFrGEAIPAIASVAKFSLATQEKGTSK 121
                  689******************9998..5689**************8777663788888888899999999**9898899999999*********9999 PP

  HATPase_c_3 100 tltldvd 106
                   + ++v+
   CCG93313.1 122 GIVIEVH 128
                  6666554 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   1.3e-08   4.7e-05       6     104 ..      25     146 ..      21     153 .. 0.62
   2 ?   -0.4   0.0      0.45   1.6e+03      66      86 ..     520     540 ..     452     565 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.......HCSTCHTSTSSS..H.HHHHH............. CS
   HATPase_c   6 LrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.......ddstkrggggtG..l.Glsiv............. 81 
                    ++++l++N++++   a++i+ve + s +  +i+v+D+G+G+++ed  ++ e++ +       d s+ +++g +G  +   + v             
  CCG93313.1  25 PASVLKELIENSIDA--GATQIDVETR-SGGISWIKVKDDGCGMSREDAFLSLERHATskisslsDFSRLTTYGFRGeaIpAIASVakfslatqekgts 120
                 56799*********6..7999999999.5578999*************996666554434444553333444433332134333334555555555554 PP

                 HH.HHHHTTTEEEEEEETTT..EEEE CS
   HATPase_c  82 kk.lvelmgGeiwvesepgr..Gttf 104
                 k  ++e +gG+i   +e+g+  Gtt+
  CCG93313.1 121 KGiVIEVHGGKIVQVNESGGleGTTV 146
                 44344456666655444433336665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.45
                 STCHTSTSSSHHHHHHHHHHH CS
   HATPase_c  66 stkrggggtGlGlsivkklve 86 
                 +t+r + ++ + ls++kk v+
  CCG93313.1 520 KTARPYWQRDIALSVCKKAVK 540
                 445555566677888887666 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   2.7e-05     0.098      81     143 ..     477     546 ..     420     548 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.7e-05
      Sec7_N  81 vferslrivllLlkkfrseLk.tEievflsllililles......dsslwqrvlaLeilrrlcsdpqllv 143
                    rsl i + Ll+   s +k t+ e+fl++++l l+e         ++wqr +aL + ++ ++   ll+
  CCG93313.1 477 FEIRSLGISSFLLEAIPSGIKrTDYEMFLREVLLELVELerhkktARPYWQRDIALSVCKKAVKSGDLLT 546
                 556899999999999999998679************9777775556678************999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4231.30
//
Query:       CCG93314.1  [L=366]
Description: putative Predicted GTPase, translation factor [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-36  123.5   0.1    6.5e-36  122.4   0.1    1.6  1  YchF-GTPase_C  Protein of unknown function (DUF933)
    2.5e-24   85.6   0.0    6.7e-24   84.2   0.0    1.9  1  MMR_HSR1       50S ribosome-binding GTPase
    2.3e-08   33.7   0.0    5.8e-08   32.4   0.0    1.8  1  FeoB_N         Ferrous iron transport protein B
  ------ inclusion threshold ------
       0.08   11.9   0.0       0.14   11.1   0.0    1.4  1  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me
       0.08   13.5   0.0       0.88   10.1   0.0    2.3  2  AAA_18         AAA domain
       0.12   12.4   0.0         25    4.9   0.0    2.7  3  Dynamin_N      Dynamin family


Domain annotation for each model (and alignments):
>> YchF-GTPase_C  Protein of unknown function (DUF933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.1   2.2e-39   6.5e-36       1      84 []     282     365 ..     282     365 .. 0.99

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 2.2e-39
  YchF-GTPase_C   1 LitffTaGekevraWtikkgttapqaAgviHsDfekgFiraevikyedlvelgseaaakeagklrlegkdyvvqdgDiilfkfN 84 
                    L+tffT+G+ke+raWti+ g tap+aAgviHsDfe+gFi ae++++ed+v +gs a+akeagklr+egkdyv+ dg+i++f+fN
     CCG93314.1 282 LRTFFTTGPKETRAWTIHAGDTAPKAAGVIHSDFERGFIAAECLRFEDFVLFGSFAKAKEAGKLRIEGKDYVIADGEIVEFRFN 365
                    79*********************************************************************************9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0   2.2e-27   6.7e-24       2      87 ..       4     116 ..       3     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 2.2e-27
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE.................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke.................ielvDtpGliegaseekglgkaflalee.adlill 81 
                 +++vG pNvGKStL+nalt++ ka+++++p++T+d+n g +++ +++                 ie+vD++Gl++gas+++glg++fla+++ +d+ill
  CCG93314.1   4 AGLVGLPNVGKSTLFNALTKSkKAEAANYPFCTIDPNIGIIAVADERleelarisksiktipaaIEIVDIAGLVKGASQGEGLGNQFLAHIReVDAILL 102
                 689*****************979******************96654467788888888888888*************************99889***** PP

                 EEETT........T CS
    MMR_HSR1  82 vvdas........e 87 
                 ++++         +
  CCG93314.1 103 ILRCFegtevhhiT 116
                 **998554444331 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   1.9e-11   5.8e-08       3      48 ..       4      50 ..       2     106 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.9e-11
                EEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEE CS
      FeoB_N  3 valvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgke 48
                  lvG pnvGk+tlfnalt++k  + +N+p  t++ + g + +++++
  CCG93314.1  4 AGLVGLPNVGKSTLFNALTKSKkAEAANYPFCTIDPNIGIIAVADER 50
                569****************9873689**********99999887765 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.7e-05      0.14      32      68 ..       4      40 ..       1      51 [. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.7e-05
                EEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE--- CS
        MeaB 32 vGltGvPGaGkstlvealglelrrrGkrvavlavDPs 68
                 Gl G+P +Gkstl +al+ + +++        +DP 
  CCG93314.1  4 AGLVGLPNVGKSTLFNALTKSKKAEAANYPFCTIDPN 40
                69*****************999999988888888886 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00029      0.88       3      21 ..       6      24 ..       5      59 .. 0.81
   2 ?    0.6   0.0      0.27     8e+02      69      92 ..     195     238 ..     177     250 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00029
      AAA_18  3 ltGtpGvGKttlakeLskr 21
                l G p vGK+tl ++L k+
  CCG93314.1  6 LVGLPNVGKSTLFNALTKS 24
                89**************665 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.27
      AAA_18  69 s.................aleegknl...vidghlaeleseaak 92 
                                   +l+e ++l   vid +  ++++++ +
  CCG93314.1 195 LlttkpillvcnveenelSLGEKNPLvhkVIDYIKTHPFYDYVI 238
                 44444455555555555577777777788999999999998776 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0085        25       3      21 ..       6      24 ..       5      41 .. 0.87
   2 ?    4.5   0.0     0.011        33     101     137 ..      66     105 ..      43     128 .. 0.88
   3 ?   -1.3   0.0      0.68     2e+03      62      85 ..     134     157 ..     111     224 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0085
                EEEBTTTTHHHHHHHHHTS CS
   Dynamin_N  3 vvGsqSsGKSSvlnaLlge 21
                +vG  + GKS++ naL+++
  CCG93314.1  6 LVGLPNVGKSTLFNALTKS 24
                6788899*********986 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.011
                 -SEEEEE---B-SSSGTTS...HHHHHHHSTTEEEEEEEE CS
   Dynamin_N 101 kgltlvDlPGldsvnkrdq...elvkeyikkadiilavts 137
                   +++vD  Gl + + + +   +    +i++ d+il+++ 
  CCG93314.1  66 AAIEIVDIAGLVKGASQGEglgNQFLAHIREVDAILLILR 105
                 5799*********999999999999999********9875 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.68
                 B--CHHHHHHHHHHHHHHHTSSSS CS
   Dynamin_N  62 ledfsevreeieketekiagankg 85 
                 l dfs +++++ek +++++ ++k 
  CCG93314.1 134 LADFSTIEKQLEKVKKRASAKGKI 157
                 567777777777777777654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2893.29
//
Query:       CCG93315.1  [L=183]
Description: Transcriptional activator RfaH, NusG family [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-17   63.4   0.1    3.4e-17   62.7   0.1    1.3  1  NusG      Transcription termination factor nusG


Domain annotation for each model (and alignments):
>> NusG  Transcription termination factor nusG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.1   1.9e-21   3.4e-17       3      86 ..      11      94 ..       9     103 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 1.9e-21
                EEEEEE-TTTHHHHHHHHHHHCT-EEE-SCEEEEEEETTEEE....CSSTTEEEEEE---CHHHHHHHCSTTEEEE-EETTSSCC-EB CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        NusG  3 WYvlqvepgkekkvkenLleeeglevivPaeekveirqgkkk....klfpgyifikadmndkllmairktpgVtgfvrvggeskpvpl 86
                WY l+v+p+kek + enL ++e++ev++P++ +++ir++k      +lfpgy+f k+++   +l  +r+ +gV  +v++g+      +
  CCG93315.1 11 WYCLSVHPKKEKFAIENL-KKENIEVFFPQILYKKIRSKKSClvlePLFPGYLFAKFNLL-SKLIFVRSAKGVRTVVHFGS--TYPVV 94
                ******************.****************99777669999************99.789999************99..33334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1376.96
//
Query:       CCG93316.1  [L=301]
Description: dTDP-4-dehydrorhamnose reductase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-24   86.1   0.0    1.1e-22   80.5   0.0    2.0  1  RmlD_sub_bind    RmlD substrate binding domain
    1.2e-14   54.4   0.0    1.7e-14   53.9   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.027   13.6   0.0      0.046   12.8   0.0    1.4  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.049   13.9   0.2       0.15   12.3   0.0    1.8  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   2.5e-26   1.1e-22       3     280 ..       2     290 ..       1     296 [. 0.86

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 2.5e-26
                    EEEESTTSHHHHHHHHHCTTTSEEEEEE-TTT--TTSHHHHHHHHHHH--SEEEE-----...-HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-E CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeeglevlaltreeldltdaeavaellkeakpdvvvnaAAyt...avDkaEseeeaayavnaeavealAeaaaavgal 95 
                    i+++G++G +Gs  +k l+++gl+++a+t +e+dl+d+++++e+l++++ d+++na  yt   +vD++E+++      n+  ++ lA+++++ g++
     CCG93316.1   2 IVLFGSSGYVGSFYKKMLQSKGLDFIAPTHKEVDLADEKKLTEFLDKIEADFIINAVGYTgkpNVDACEENKVDCLLGNVIIPGILAKVCTKKGIV 97 
                    899*********************************************************7778******************************** PP

                    EEEEEEGGGS-S-.......TTS-B-TTS---......-SSHHHHHHHHHHHHHHHH-SSEEEEEE-SEESSSSS-HHHHHH...HHHHH-SEEEE CS
  RmlD_sub_bind  96 LihvStDyVFdGe.......kkrpYeeddets......PlnvYGrtKlaGEqavlaagkkalivRtswvygekgknfvktml...rlakereelkv 175
                    + +vS+  V+ G+       +   ++e+d+++      P ++Y   K++ E+    a+  ++ +R++  + ++ kn+++++l   rl++ r++l+ 
     CCG93316.1  98 FGQVSSGCVYQGDkgirqdgERIGFQEEDPPNfsfrasPCSFYSGCKALAEELLVGASCYIWRLRMPFHWQDHPKNYLSKLLfypRLLDARNSLS- 192
                    *************9999986555599999874444444****************************************99984445566666665. PP

                    ESS-EE--EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCHTT......SEEEEE-CCCS--SS---S.BE-B--HHHH CS
  RmlD_sub_bind 176 vaDqlgsPTsardlAevllqllekaaeekelagvyHlanegetswlefArailkeagads......eevkpistaeyptpAkRPa.nSvLdtekle 264
                             + ++  ++ ++  ek++     +g+yH++n+g++++ e+ ++il +   ++      + +   +++e+ +  k P+ n vLd++kl 
     CCG93316.1 193 ---------EIEEFVRASFECWEKRLP----FGIYHITNTGSITTREIIEKILVSPLGKKlrdkgkKFLFFENEKEFLKHVKAPRsNCVLDNSKLL 275
                    .........556777888888888886....*************9999999986544444466665555566777888877777537899999999 PP

                    HCCT----BHHHHHHH CS
  RmlD_sub_bind 265 atfgiklrewrealke 280
                    +  gik+r+ +eal+e
     CCG93316.1 276 SC-GIKIRNIEEALEE 290
                    88.9999999999987 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   3.8e-18   1.7e-14       1     153 [.       2     151 ..       2     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 3.8e-18
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S.--..-HHHHHHSHHHHHHHHTHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAa.vg..gvaassedpadfieknlqgtl 96 
                 i++ G +G++Gs   k l++kg + i+ +++               e+dl d+++l++++++ ++d +i++ +  g  +v+a  e++ d++  n+++  
  CCG93316.1   2 IVLFGSSGYVGSFYKKMLQSKGLDFIAPTHK---------------EVDLADEKKLTEFLDKIEADFIINAVGyTGkpNVDACEENKVDCLLGNVIIPG 85 
                 6788***************************...............*************************875552257899**************** PP

                 HHHHHHHHHTCTEEEEEEEGGGGTSCSSS.S.......BSTCSTTS--..--SSHHHHHHHHHHHHH CS
   Epimerase  97 nlleaarkagvkrllflsSsevYGkdaeq.p.......keettltgpl..kpnspYaaaKlageklv 153
                  l++++ k+g+  + ++sS +vY  d+ + +       +ee+  + ++   p s Y+  K+++e+l+
  CCG93316.1  86 ILAKVCTKKGI-VFGQVSSGCVYQGDKGIrQdgerigfQEEDPPNFSFraSPCSFYSGCKALAEELL 151
                 ***********.***********96666322234444677777777778888888888888888876 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     1e-05     0.046      61     120 ..      34      96 ..       5     103 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1e-05
                      --TT-HHHHHHHTT..T-SEEEE-----...-HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT- CS
  Polysacc_synt_2  61 gdvrdkerlekaleelkvdvvfhaAAlK...hVPlveenpleaiktNvlgtenvieaaieagv 120
                       d++d+++l++ l++++ d++++a  +    +V ++een ++++  Nv+    ++++++++g+
       CCG93316.1  34 VDLADEKKLTEFLDKIEADFIINAVGYTgkpNVDACEENKVDCLLGNVIIPGILAKVCTKKGI 96 
                      5889********************9995334799****************9999999999886 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.47   2.1e+03       1      17 [.       2      19 ..       2      26 .. 0.81
   2 ?   12.3   0.0   3.3e-05      0.15      51      97 ..      31      77 ..      14      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.47
                     EEEE--.SHHHHHHHHHH CS
  Sacchrp_dh_NADP  1 vliiGa.GsvGqavaell 17
                     ++++G+ G+vG++  ++l
       CCG93316.1  2 IVLFGSsGYVGSFYKKML 19
                     7999*******9876665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.3e-05
                     EEE--TTTHHHHHHHHHTTS..SEEEE-SSGGGHHHHHHHHHHHT-EEE CS
  Sacchrp_dh_NADP 51 aialdaenyeavLaallkeg..dlvvnlsppissldvlkaCietgvhyv 97
                      +++d +++++ L++ l +   d+++n+++++   + ++aC e++v+++
       CCG93316.1 31 HKEVDLADEKK-LTEFLDKIeaDFIINAVGYTGKPN-VDACEENKVDCL 77
                     5799*******.****999889******99987665.69*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 1994.53
//
Query:       CCG93317.1  [L=413]
Description: Predicted pyridoxal phosphate-dependent enzyme involved in regulation of cell wall biogenesis [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.3e-112  374.7   0.0   7.1e-111  371.0   0.0    1.9  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
     0.0016   17.7   0.0     0.0057   15.9   0.0    1.8  2  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.011   14.3   0.1      0.022   13.3   0.0    1.5  2  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.0   0.0  1.2e-114  7.1e-111       3     361 .]      22     399 ..      20     399 .. 0.95

  Alignments for each domain:
  == domain 1  score: 371.0 bits;  conditional E-value: 1.2e-114
                      HHHHHHHHHHHHTSS-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTT CS
  DegT_DnrJ_EryC1   3 keeeleaveevlksgwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdt 96 
                      k+ + +a+ +vl+sg ++ g+ev++FE+ +a+yl+v+h+++vssG++Al+laL+a+gv++gdeVI p +tF+ata++v+++gakpvf+Dv+p  
       CCG93317.1  22 KKSIEQAFSRVLESGRYILGQEVRSFEQSVARYLNVRHCLGVSSGSDALLLALMAFGVKAGDEVICPVFTFFATASSVARAGAKPVFADVCPGC 115
                      678899**************************************************************************************** PP

                      SSB-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS.-SSS-EEEEESTHH CS
  DegT_DnrJ_EryC1  97 ynidpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnl.ttGeGGavvtndee 189
                      ++++p++++a i ++t++I+pVhl+Gq+adm+  kai +k+ l +ieD+A+A+Ga++ +kk+G++g++++fSF+ptKnl + Ge+G+v t +++
       CCG93317.1 116 FQLSPSEVQARISSNTQGIIPVHLFGQCADMEGFKAIEEKKHLFLIEDSAQAFGASIGNKKAGTFGSVGCFSFFPTKNLaAFGEAGLVSTSSDD 209
                      ********************************************************************************************** PP

                      HHHHHHHHHBTTCECCTCSSCECCSS---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSS............ CS
  DegT_DnrJ_EryC1 190 laekarvlrnhGlkrkaekryvgevelGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketk............ 271
                      +a+k+++lr+hG++   +++y +e  lG n+r++e+qAA + ++L+ +d+l+a+R ++a+ y++++ + +  ++++ p   +            
       CCG93317.1 210 IASKIQALRVHGSS---KEKYSHEW-LGGNFRMDEMQAAFLSVRLAAVDSLIAQRIKNAQFYEKAFLSSGVAIKCPDPCLCQtrqqeensrwle 299
                      ************99...59******.****************************************9988777766543222223356789*** PP

                      ...............SEEESCEEEEEHCCHHHCHHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSH CS
  DegT_DnrJ_EryC1 272 ...............khawhlyavlveeeaevkrdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelte 350
                                     +h + +y+++v++    +rd+l + l+e+ i+t+++yp+plh+qp +     + +gd+p ae+l+e+vl+Lp+ p+l e
       CCG93317.1 300 kewgypiflpnrvrgTHTFNQYVIRVKK----DRDRLRNYLREQRIQTEIYYPIPLHLQPCFSFLG-YRKGDFPIAEKLSEEVLALPIFPGLRE 388
                      *************866***********5....5*******************************96.6678*********************** PP

                      HHHHHHHHHHH CS
  DegT_DnrJ_EryC1 351 edvdrVvealr 361
                      e+++rVve++r
       CCG93317.1 389 EEMERVVETIR 399
                      ********985 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.6e-07    0.0057      46     141 ..      44     129 ..      16     170 .. 0.80
   2 ?   -1.2   0.0      0.14   8.6e+02     274     297 ..     318     341 ..     312     396 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.6e-07
                    HHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTT CS
  Aminotran_1_2  46 lpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealke 141
                      ++e+ +a++l+            + v+sG++al+ al+++  + +gde++ p  t+      +  +g++ v   +  +  f+l   ++++ +++
     CCG93317.1  44 VRSFEQSVARYLN--------VRHCLGVSSGSDALLLALMAFG-VKAGDEVICPVFTFFATASSVARAGAKPVFADVC-PGCFQLSPSEVQARISS 129
                    4689*********........555899****************.9*************************98877743.56667766666666666 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.14
                    HHHHHHHHHHHHHHHHHHHHHSTE CS
  Aminotran_1_2 274 leemrqrlqkrrkelrdeLaelgl 297
                    +++ + r++k r++lr+ L+e  +
     CCG93317.1 318 FNQYVIRVKKDRDRLRNYLREQRI 341
                    789999999******999988743 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.7e-06     0.022      55     111 ..      45     102 ..      21     165 .. 0.78
   2 ?   -3.3   0.0       0.4   2.4e+03     243     279 ..     312     348 ..     311     353 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.7e-06
                      HHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTT.S-TTEEEEEESTSSHHHHHHHHHT CS
  Cys_Met_Meta_PP  55 svleeriaaLeggeaalavssGmaAiaaailal.lkaGdeivvsddlYggtqrllkkv 111
                      + +e+++a   ++ ++l vssG  A+ +a++a+ +kaGde+++    +  t + + + 
       CCG93317.1  45 RSFEQSVARYLNVRHCLGVSSGSDALLLALMAFgVKAGDEVICPVFTFFATASSVARA 102
                      6799****************************98899******988887777655444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.4
                      HHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-T CS
  Cys_Met_Meta_PP 243 lrGlkTLslRlerhqenAlkvAefLekhpkvekvyYp 279
                      +rG +T +  + r ++   ++ ++L+++   +++yYp
       CCG93317.1 312 VRGTHTFNQYVIRVKKDRDRLRNYLREQRIQTEIYYP 348
                      5899999988899999999999999999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 2982.25
//
Query:       CCG93318.1  [L=820]
Description: Organic solvent tolerance protein OstA [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0035   17.5   0.9      0.021   15.0   0.2    2.4  2  OstA      OstA-like protein


Domain annotation for each model (and alignments):
>> OstA  OstA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   1.2e-06     0.021      72     112 ..      77     117 ..      46     118 .. 0.87
   2 ?   -1.2   0.0      0.13   2.3e+03      67      93 ..     161     185 ..     144     190 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-06
        OstA  72 kAerieydskkeiivLtgnatltqnsnsveGseitydikee 112
                 +A++i yds k++++  gna++ +++ ++++s+i+y+ +++
  CCG93318.1  77 YADEISYDSVKREVIADGNARVYTEKRVFRASHIVYNLDTK 117
                 79***********************************9986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.13
        OstA  67 eqirGkAerieydskkeiivLtgnatl 93 
                  + + kA++i+ + ++++iv++ n+t+
  CCG93318.1 161 PYFQTKAKTIDIY-ANDKIVMK-NVTV 185
                 5678899999999.66779999.8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 6028.02
//
Query:       CCG93319.1  [L=197]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-09   35.8   0.0    1.1e-08   35.2   0.0    1.3  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   5.9e-13   1.1e-08       1      85 [.       8      97 ..       8     100 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 5.9e-13
                    HHHHHHHHHHHSSEEEEEEEETTSEEEEEEEEEEEETTT...TEEEE.EEETTSHHHHHHHHH-EEEEEEEETT.GSEEEEEEEEEEEES CS
  Putative_PNPOx  1 ldeelreflaeskavvlATvdedGrPnvspvllkagdgr...dgivf.atnadsrklrnleenprvallfldde.lgrgvrieGtaelvs 85
                    ++ el++f+ ++k++++AT+++  r+n+sp++l  +      +++++  t    +++++l ++ r++l+f+++e +   +r++G+ ++++
      CCG93319.1  8 ITNELQDFIVNQKIFFVATATATSRINLSPKGLDTLRIIspkKILWLnLTGSGNETAAHLTTDGRITLMFCSFEgKPLILRLYGKGRVIH 97
                    6889****************************8866555884444442355555********************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1296.35
//
Query:       CCG93320.1  [L=194]
Description: Potassium-transporting ATPase C chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-64  215.5   0.0    5.5e-64  215.3   0.0    1.0  1  KdpC      K+-transporting ATPase, c chain


Domain annotation for each model (and alignments):
>> KdpC  K+-transporting ATPase, c chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   0.0   3.1e-68   5.5e-64       4     182 .]      10     189 ..       7     189 .. 0.97

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 3.1e-68
                 HHHHHHHHHHHHHTHHHHHHHHHHHHH-HHHHTT-E.EE.ETEEEEETTT------SSS--------ST-TTT-------SS-HHHHHHHHHHHHHHHH CS
        KdpC   4 alrlllvltvllgliYplavtgiaqllfpeqAnGsl.ieadgkvvGseligqeftsdkYfhgRpsavnynaaasggsnlgpsnpellerveervaalra 101
                 +++l+l+l+++l+ +Yp++v ++++llfp q+ Gsl i+++g+v Gs ligq+f+s+ Yfh+Rpsa ny+  +sggsnlgps+++++e++++r+ ++r+
  CCG93320.1  10 SVKLTLLLLLILSGLYPFTVYILGKLLFPYQSAGSLiIDSQGHVRGSLLIGQNFESPAYFHPRPSASNYDGLSSGGSNLGPSSSDFIETIKKRAISYRK 108
                 6899*******************************736688********************************************************** PP

                 H-TTS..-SB-HHHHS-BSSS---EE-HHHHHHTHHHHHHHHT--HHHHHHHHHHTEE--SSTTT---EEEHHHHHHHHHH CS
        KdpC 102 enpekkkeevPadlvtaSgSGLDPhIspeaAelQvarvakarglseeeveklvaentegrllgilGeprVnVlklNlaLdk 182
                 en+ ++++ +Pad+v aS+SGLDPhIs+++A lQ++rvakar+ + + +e+l+ +nt+++l +++Ge+ VnVlklNl+Ldk
  CCG93320.1 109 ENEIAPSSLIPADAVCASASGLDPHISLKNALLQAPRVAKARKADLKAIENLILKNTQHPLANVFGEESVNVLKLNLELDK 189
                 *******************************************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1426.53
//
Query:       CCG93321.1  [L=682]
Description: Potassium-transporting ATPase B chain (Potassium-translocating ATPase B chain) (ATP phosphohydrolase (potassium-transporting) B chain) (Potassium binding and translocating subunit B) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-33  113.5   3.9    7.8e-33  113.5   3.9    2.3  2  E1-E2_ATPase  E1-E2 ATPase
    1.8e-31  110.1   1.7    2.4e-31  109.7   1.0    1.5  2  Hydrolase     haloacid dehalogenase-like hydrolase
    0.00035   20.4   0.7     0.0022   17.8   0.2    2.4  2  Hydrolase_3   haloacid dehalogenase-like hydrolase
     0.0046   17.4   0.0      0.019   15.3   0.0    2.1  1  HAD           haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   3.9   1.7e-36   7.8e-33       5     180 ..     101     277 ..      97     278 .. 0.93
   2 ?   -0.9   3.1      0.22   9.9e+02     111     167 ..     580     640 ..     561     648 .. 0.64

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 1.7e-36
                   -EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G...-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTS CS
  E1-E2_ATPase   5 ptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpveke...kgdmvfsGtvvvsgeakavVtatgedtelgkia 98 
                   ++ak++  g+e+ ++a+el+ GD+v++ agd++p Dg++veg a+vdesa+TGEs pv +e    ++ v++Gt v+s+++++++ta   +t+l++++
    CCG93321.1 101 TMAKKLVQGKEVLVNASELKKGDLVVCIAGDIIPSDGEVVEGAATVDESAITGESAPVIREsggDRSAVTGGTRVISDRIVIKITAEPGNTFLDRMI 197
                   67889999****************************************************64447899***************************** PP

                   TTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  99 rlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrlak 180
                   ++ve ak++ktp +  l+ l + l+++ ll++++++ ++ + + +   ++    +l+v+ iP  ++ ++  + ++g+ rl +
    CCG93321.1 198 EMVEGAKRQKTPNEIALTILLASLTFIFLLVVVTLVPFLKYSQAP--ISIPILTSLFVCLIPTTIGGLLNAIGIAGIDRLVQ 277
                   ****************************99999999987555555..69999*************************99865 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.22
                   HHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT....HHHHHHHHHHHHHS-TTHHHHH CS
  E1-E2_ATPase 111 lqkkldklgkvlvpvvlliallvflialllgksla....eallralallvaaiPcaLplav 167
                   + + + k+++++ ++ +  + ++  ++++  +++      a+++  ++++  iP+aL  ++
    CCG93321.1 580 IANDVAKYFAIIPAMLMSTFPAISPLNIMQLHTPEsailSAVIFNAVIIILLIPIALKGVT 640
                   4444444444444455555556666777777777755565555566677888898887665 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.4   6.3e+03      82     175 ..      82     106 ..      16     149 .. 0.64
   2 !  109.7   1.0   5.3e-35   2.4e-31       1     210 []     294     530 ..     294     530 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.4
                 CHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  82 ippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakps 175
                 i +  g+a  +  +q rtv                                                                       ak +
  CCG93321.1  82 IAESRGKAQAESLKQTRTVT---------------------------------------------------------------------MAKKL 106
                 22223333333333333333.....................................................................33333 PP

  == domain 2  score: 109.7 bits;  conditional E-value: 5.3e-35
                 SSEEEEESBTTTBCHHHHHHHHHHHH.....CHHHHHHHHHH.HHCHHHHHHHHHHHHH.....HHHHHHHHHETTTE....................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxx.xxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx....................x RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa.....alalaaaletg.sehpigkalvaaakar.....sgaltgfatfigrg....................a 68 
                 i+++++Dk+GT+t g++  +++i+        l  aa+l+    e+p g+ +v  ak+      ++ l+  a+fi +                     +
  CCG93321.1 294 IDVLLLDKTGTITLGNRMATEFIAAPgidhyRLVDAAQLASLaDETPEGRSIVILAKEKyglrgREVLDTRAKFIPFSaktrmsgvdffsadgsccerK 392
                 789*************999999999988877555555555558*********99999998888633334444444444666888888888999*****8 PP

                 HHHTHHHHHHHH......HCHHHHHHHHHHHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGG CS
                 xxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  69 yaigkpewltal......dippdlgaaigsaqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddy 159
                 + +g+ + ++a        i++ +++ ++   + g t  ++   +++l+v++++d   +k +++e +a+L+++gi+++++tgdnp ta ++a ++G   
  CCG93321.1 393 IRKGSMDAIEAYlqemggSISQSVKEIVENVAKNGGTPLVVveGKDVLGVIELKDI--IKGGIRERFARLRKMGIRTIMITGDNPLTAAAIAAEAG--- 486
                 8888888555554445*********************99998888***********..**************************************... PP

                 ESEEEEHHCES.STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 160 fdaviasdiet.vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                         ++   a + pe+k++ ir+ q+ ++ vam GDg nDa+ala+A+
  CCG93321.1 487 --------VDDfMAQVTPEQKLKRIRQEQVLGHLVAMAGDGTNDAPALAQAD 530
                 ........6667*****************99999*****************8 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.22   9.7e+02      21      58 ..     454     491 ..     446     494 .. 0.87
   2 !   17.8   0.2     5e-07    0.0022     206     242 ..     513     549 ..     500     555 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.22
                  HHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEE CS
  Hydrolase_3  21 keaikklkekgikvviATGRslravlpvleelgldlpv 58 
                  +e +++l++ gi  +  TG ++ ++  ++ e g+d ++
   CCG93321.1 454 RERFARLRKMGIRTIMITGDNPLTAAAIAAEAGVDDFM 491
                  677899*************************9999877 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 5e-07
                  EEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEE CS
  Hydrolase_3 206 viafGDgeNDieMLeaaglgvAmgnaseevkkaAdyv 242
                  v+  GDg ND + L +a++gvAm+ +++ + +a ++v
   CCG93321.1 513 VAMAGDGTNDAPALAQADVGVAMNTGTQAAREAGNMV 549
                  6778************************999987776 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.3e-06     0.019      85     187 ..     448     526 ..     389     527 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.3e-06
         HAD  85 lldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsD 183
                 +++ g++e++a+ r+ G+r+++++g +   + +++ae g+d+++a        +t e           +k++++r+      e    + v   GD+ +D
  CCG93321.1 448 IIKGGIRERFARLRKMGIRTIMITGDNPLTAAAIAAEAGVDDFMAQ-------VTPE-----------QKLKRIRQ------EQVLGHLVAMAGDGTND 522
                 67789**********************************7777777.......4444...........55666666......22222224444777777 PP

         HAD 184 lpll 187
                  p+l
  CCG93321.1 523 APAL 526
                 7776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 4290.26
//
Query:       CCG93322.1  [L=572]
Description: Potassium-transporting ATPase A chain [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.6e-214  712.0  21.1   4.2e-214  711.8  21.1    1.0  1  KdpA          Potassium-transporting ATPase A subunit
  ------ inclusion threshold ------
      0.015   15.8   1.2       0.22   12.1   0.2    3.1  2  DUF2818       Protein of unknown function (DUF2818)
       0.94    9.2   5.3       0.13   12.0   0.2    2.2  2  TMEM208_SND2  SRP-independent targeting protein 2/TMEM208


Domain annotation for each model (and alignments):
>> KdpA  Potassium-transporting ATPase A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  711.8  21.1    7e-218  4.2e-214       2     547 .]      11     564 ..      10     564 .. 0.98

  Alignments for each domain:
  == domain 1  score: 711.8 bits;  conditional E-value: 7e-218
                 HHHHHHHHHHHHHHHHHHHHHTT-....--SS-SHHHHHHHHHHT---.----HHHHHHHHHHHHHHHHHHHHHHHHTTTTSS--SS------HHHHHH CS
        KdpA   2 lllllllllalplgkylakvfege.ktlldkllkpverllyrllgvdeeeemtwkeYalalllfnlvlllllylllrlqgvlplnpeglealspdlafn 99 
                 l++ +l++l +plg ++++v+++e kt++d++lkp+e+l+y+++ +d+++e++w eYa+ +llfn++++l++y++ r+q++lplnpe+++ ++p++afn
  CCG93322.1  11 LFISILAVLNKPLGIHIYRVLDREgKTIFDAFLKPLENLTYKICSIDKSKEHNWIEYAVGILLFNFAGMLMTYFVPRMQHFLPLNPEHIGPMAPHIAFN 109
                 57899****************88757899********************************************************************** PP

                 HHHHHHTT-----S-HHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHS-S-S----HHHHHHHHHHHTHHHHHHHHHHHHHHHT--------EE CS
        KdpA 100 tavSFvtntnlQhYsgestlsylsqmlgltvlnFvsaatGlavavalirglarketkelGnfyvdlvrailrvLLPlslvvalllvaqGvpqtlsgkae 198
                 ta+SF tntn+Q+Y +e+++sy+sqm+gl+++nF+saatG+ava+a++rg++r+e+k++Gn +vdlvr+ ++vLLPlslv alll++qGvpq+++++ +
  CCG93322.1 110 TAISFGTNTNWQSYVPEKEVSYFSQMVGLAFQNFTSAATGIAVAAAFVRGIVRTEAKTVGNCWVDLVRINYYVLLPLSLVGALLLISQGVPQNFHPYLR 208
                 *************************************************************************************************** PP

                 EE-SSS-....EEEE--SSHHHHHHHHHHTT----SSSSTTTSTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHTS-THHHHHHHHHHHHHHHHHHHHH CS
        KdpA 199 vttlega....kqtialGpvAsleaIkqlGtnGGGffgaNsahpfenptaltnlleilaillipaalvftfGrmvkdkrqglailavmlvlflvllvvv 293
                 +  l+ +       +++Gp+As+e+Ik lGtnGGGff+aNsahp+enpt+l+n++e+l+i+lip al++ fG  +k+  +g+ i+++m++lflvl + +
  CCG93322.1 209 YLPLDSKaheeACILPQGPIASQEVIKLLGTNGGGFFNANSAHPYENPTPLSNFMEMLLIFLIPSALTYYFGLSCKKLSHGWSIWITMVLLFLVLSLSC 307
                 999995544447889************************************************************************************ PP

                 HHHHHH--HHHHH....-----TTB-SSS-HHHHHHHHHHHHHTT----SS-GGGS-HHHHHHHHHHHHT.S-TT-TTTHHHHHHHHHHHHHHHHHHHH CS
        KdpA 294 vvaeaagnpalae..eqaggnmeGkEvrfGiaasalfavvttatstGavnamhdsltplgglvpllnmml.evvfGGvGvGllnllvfvilavFiagLm 389
                 ++ e+agnp ++    ++++nmeGkE+rfGi +++lfa+vtt++s+Gavn+mhds+ pl+g++pl+nm l e++fGGvG+Gl+++l+fvil+vF+ gLm
  CCG93322.1 308 YWLEHAGNPFFKPfgIEQQANMEGKETRFGIFETTLFAAVTTSASCGAVNSMHDSFLPLSGMIPLFNMSLgEIIFGGVGSGLYGMLLFVILSVFLFGLM 406
                 ***********99997789******************************************************************************** PP

                 HTS--EETTEE--HHHHHHHHHHHHHHHHHHHHHHHHHTTSH.HHTT--S-THHHHHHHHHHHHHHHTT-----S-S---SHHHHHHHHHHHHHHHHHH CS
        KdpA 390 vGrtPeylgkkiearevklaalaiLvhpllilvgtalalalp.alaslsnpgahglsevLYeftSaaanNGSafeGlgdntvfwnltlglamllgRflp 487
                  GrtP ylgk+i+a+e+k+a+la++++ + il  +ala+  + +l++l n+g+hgl+e LY+f S+++nNGSaf Gl++++v + + lglam++gR+++
  CCG93322.1 407 TGRTPGYLGKRIGAYEIKMAVLALMIQYISILGLSALAIHSSwGLTALGNKGPHGLTETLYAFVSTTENNGSAFGGLSATSVPYAIFLGLAMFFGRYFI 505
                 ******************************************88888**************************************************** PP

                 HHHHHHHHHHHHTS------TT---SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH CS
        KdpA 488 iiavlaiAgslaakkkvpesagtlktdtplFvvllvgvilivgaLtFlPalaLGPiaehl 547
                 ii+vla+Agsl+ +k+   s+  ++t+++lFv++l + i++v+aL+F+P+++LGP++ehl
  CCG93322.1 506 IIPVLAVAGSLVCQKRY-ISQTVFPTSGALFVFILGAAIFLVAALNFFPVFTLGPVLEHL 564
                 ************99998.68889***********************************98 PP

>> DUF2818  Protein of unknown function (DUF2818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.19   1.1e+03      62      86 ..      58      79 ..      50      87 .. 0.73
   2 ?   12.1   0.2   3.6e-05      0.22      37      87 ..     260     309 ..     250     314 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.19
     DUF2818 62 nvaaqgWeFYavtlslflvfafpgf 86
                + ++++W  Yav + lf    f g+
  CCG93322.1 58 KSKEHNWIEYAVGILLFN---FAGM 79
                567889999999998874...4444 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.6e-05
     DUF2818  37 lrllEllvlylvvgllalllEaragnvaaqgWeFYavtlslflvfafpgfv 87 
                  +++E+l+++l+  +l++++  +  +  ++gW  +++++ lflv+++  + 
  CCG93322.1 260 SNFMEMLLIFLIPSALTYYFGLS-CKKLSHGWSIWITMVLLFLVLSLSCYW 309
                 5789************9999755.566789***************998875 PP

>> TMEM208_SND2  SRP-independent targeting protein 2/TMEM208
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   2.2e-05      0.13      20      74 ..     265     320 ..     254     373 .. 0.86
   2 ?   -2.5   1.0      0.62   3.7e+03      36      61 ..     521     546 ..     485     552 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.2e-05
  TMEM208_SND2  20 lrlislavnalylllrlll.rsslrprslllylllslpalllyyvlekmgrpkyde 74 
                   + li+l+  al++ + l + + s+ ++ +++++ll+l+  l+ y+le+ g p +++
    CCG93322.1 265 MLLIFLIPSALTYYFGLSCkKLSHGWSIWITMVLLFLVLSLSCYWLEHAGNPFFKP 320
                   56777778888888888888999*****************************9875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.62
  TMEM208_SND2  36 lllrsslrprslllylllslpallly 61 
                    +++++  p+s +l++++  +a++l+
    CCG93322.1 521 RYISQTVFPTSGALFVFILGAAIFLV 546
                   22245666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4129.60
//
Query:       CCG93323.1  [L=764]
Description: Primosomal protein N', superfamily II helicase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-20   70.5   0.0    3.5e-19   68.5   0.0    2.1  3  PriA_3primeBD   3′ DNA-binding domain (3′BD)
    1.4e-17   64.3   0.6    7.7e-17   61.9   0.0    2.6  3  PriA_C          Primosomal protein N C-terminal domain
    8.7e-13   48.6   0.0      3e-12   46.9   0.0    1.9  2  ResIII          Type III restriction enzyme, res subunit
    1.1e-12   48.1   0.0    2.5e-12   46.9   0.0    1.7  1  DEAD            DEAD/DEAH box helicase
      3e-11   43.6   0.1    6.5e-08   32.9   0.0    2.8  2  Helicase_C      Helicase conserved C-terminal domain
      5e-09   36.0   5.0    8.4e-09   35.3   1.9    2.4  2  PriA_CRR        PriA DNA helicase Cys-rich region (CRR) domai
     0.0012   18.0   0.0     0.0019   17.5   0.0    1.2  1  PIF1            PIF1-like helicase
     0.0071   16.3   0.1      0.074   12.9   0.0    2.3  2  ATPase_2        ATPase domain predominantly from Archaea
     0.0076   15.2   0.0        2.2    7.1   0.0    2.1  2  TrwB_AAD_bind   Type IV secretion-system coupling protein DNA
  ------ inclusion threshold ------
      0.034   14.5   0.0      0.068   13.5   0.0    1.4  1  AAA_19          AAA domain
       0.14   12.2   3.1       0.11   12.5   0.7    2.1  2  zinc-ribbons_6  zinc-ribbons
        8.3    6.3   7.4         23    4.9   1.4    2.9  2  A2L_zn_ribbon   A2L zinc ribbon domain


Domain annotation for each model (and alignments):
>> PriA_3primeBD  3′ DNA-binding domain (3′BD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   2.3e-22   3.5e-19       1      96 []      19     113 ..      19     113 .. 0.98
   2 ?   -3.9   0.0       8.8   1.3e+04      38      82 ..     184     225 ..     181     231 .. 0.59
   3 ?   -2.8   0.0         4     6e+03      55      87 ..     691     724 ..     680     729 .. 0.69

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 2.3e-22
  PriA_3primeBD   1 eVavdlpldrtfdYrvpeelevki..GsrVlVpfgkrklvGiVvalkeeseveeeklkpieevldeepllteellelaewlaeyylaplgevlkaa 94 
                    +V++d + d ++dY++pe+le++i  G+ V+Vpf++    GiVv++ e+++   + lkp++   ++e l+++++l+l++w+a+yy++pl+++l+aa
     CCG93323.1  19 RVLLDNKRDFLLDYAIPEALEKEIvlGTHVRVPFKNGFGKGIVVDILEKQN---SALKPLLCRENKELLVPQNILKLCKWIADYYCSPLISALQAA 111
                    699999**************99999**********************9998...9***************************************** PP

  PriA_3primeBD  95 lP 96 
                    lP
     CCG93323.1 112 LP 113
                    *9 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 8.8
  PriA_3primeBD  38 vGiVvalkeeseveeeklkpieevldeepllteellelaewlaey 82 
                     G++v+l+++++    ++ pi   l+    lt+e+ + ++ ++e+
     CCG93323.1 184 KGLIVGLSQKKD---GNYFPIVPDLSFPKCLTKEQSHAVRLIEEE 225
                    678888888777...444444444444555666666666655555 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 4
  PriA_3primeBD  55 lkpieevlde.epllteellelaewlaeyylapl 87 
                    +k+i+e l++ + ++ e   + +  ++ +y+++l
     CCG93323.1 691 TKEIKEALKDsNAIIGEPTQAPIAKIKGKYHYQL 724
                    6888887775256666777777777777777765 PP

>> PriA_C  Primosomal protein N C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       7.2   1.1e+04      63      80 ..     146     163 ..     143     174 .. 0.62
   2 ?   -2.4   0.0       5.8   8.7e+03      40      58 ..     268     286 ..     243     287 .. 0.59
   3 !   61.9   0.0   5.1e-20   7.7e-17       1      94 []     666     759 ..     666     759 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7.2
      PriA_C  63 sksrkalqkllkellekl 80 
                 +k++k+  ++l+++++++
  CCG93323.1 146 AKKEKEALDFLQKWQPAW 163
                 566666666666666654 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.8
      PriA_C  40 ilgpapapiakikgryryq 58 
                  +  +p  +++ik r+ +q
  CCG93323.1 268 EISLTPQLLERIKARFTAQ 286
                 4556788889998888766 PP

  == domain 3  score: 61.9 bits;  conditional E-value: 5.1e-20
      PriA_C   1 PFsrlalirvsgkdeekveeaaeelaellkealkleeveilgpapapiakikgryryqillksksrkalqkllkellekleklkkvrvsiDvDP 94 
                 PF+r +lir+ g  eekv+   e++ +++kealk+++  i  p++apiakikg+y+yq+++++++  ++++ lk+l+   e++ ++++ iDvDP
  CCG93323.1 666 PFCRAILIRFIGSPEEKVKFMTEAFTKEIKEALKDSNAIIGEPTQAPIAKIKGKYHYQLFIRCQKVMEISQKLKKLIFGKESEMGINIRIDVDP 759
                 9******************************87664445999********************************99988766669********9 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0     2e-15     3e-12       4     169 ..     211     376 ..     209     378 .. 0.78
   2 ?   -3.2   0.1         5   7.5e+03      71     118 ..     687     735 ..     683     748 .. 0.58

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 2e-15
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--.. CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke....igkkvsgdkkka.. 96 
                 l + Q +a++ ++e++++   + +l+   TG+GKT v++++ie++l+++k  ++l+lvp++sl+ q+le++k  +  + ++    ++ + +++k     
  CCG93323.1 211 LTKEQSHAVRLIEEEMHKGLPQPILLFGVTGSGKTEVYMRTIEKCLTQKK--QVLLLVPEISLTPQLLERIKARFTAQGASigcwHSRISRSEKA-Tlw 306
                 6789*************89999*************************855..9********************9999988766643333333333.358 PP

                 .......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T......TTHHH....HHT---SEEEEEESS- CS
      ResIII  97 kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk......swrei....lekfkeavllglTATp 169
                 + + + +++ilv t ++l a+              +  +ii+DE H ++ k+      + r +    ++   + ++lg +ATp
  CCG93323.1 307 YDILRGKINILVGTRSALFAPF------------PSLGLIIVDEEHESSFKQeespryHGRDVavmrARLEGALIILG-SATP 376
                 888999****************............6788**********997344555522223222122223466666.7777 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5
                 HHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH CS
      ResIII  71 leefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldads 118
                  e+f+k ++ea k+ + ++ + ++ +  +++ +    l++  q++ ++s
  CCG93323.1 687 TEAFTKEIKEALKDSNAIIGEPTQAPiAKIKGKYHYQLFIRCQKVMEIS 735
                 5677777777777766666666655543333333334555556655555 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.7e-15   2.5e-12       4     171 ..     215     379 ..     212     384 .. 0.71

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.7e-15
                 HHHHHHHHHTT......CEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEE...ETTSSHHHHHHH CS
                 xxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx RF
        DEAD   4 Qaeaiplilgg......gdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlli...iggvaardqlsk 93 
                 Q++a+ li ++      + +l+ + TGsGKT++++  + +++     ++++++l+++P  +L+ q l+++k ++   + ++ ++   i+ +++   + +
  CCG93323.1 215 QSHAVRLIEEEmhkglpQPILLFGVTGSGKTEVYMRTIEKCL-----TQKKQVLLLVPEISLTPQLLERIKARFTAQGASIGCWhsrISRSEKATLWYD 308
                 6666666664444445567889999**************999.....56889***********************766555555122444444444444 PP

                 H.HTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS.H CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.x RF
        DEAD  94 l.dngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlp.k 171
                 + + +++i+vgt + l+         + ++ ++++DE ++ + + +++  +   + ++    + + +   +i+ SAT++ +
  CCG93323.1 309 IlRGKINILVGTRSALFA-------PFPSLGLIIVDEEHESSFK-QEESPRYHGRDVA--VMRARlEGALIILGSATPSlE 379
                 42556***********98.......3789***********9987.3333333334443..233331333499999999755 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0033         5       8      75 ..     254     322 ..     244     324 .. 0.79
   2 !   32.9   0.0   4.4e-11   6.5e-08      33     110 ..     530     622 ..     500     623 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0033
                 HHHHHTTTTSEEEEEESSHH....HHHHHHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGG CS
  Helicase_C   8 ellkleeeggkilifvntid....rlekvklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdv 75 
                 ++l    +++++l+ v+ i+        ++ ++ ++   g ++ + h++++ +e+     +  +g++++L+ t+ 
  CCG93323.1 254 KCL---TQKKQVLLLVPEISltpqL---LERIKARFtaqGASIGCWHSRISRSEKATLWYDILRGKINILVGTRS 322
                 344...7899**********65532...444444445569********************************975 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 4.4e-11
                 HHHHHHT.TSTEEEESTTSTHHH..HHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS............SSHHHHHHHHTTSSST CS
  Helicase_C  33 klllekk.gikvavlhgelpqne..reeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp............rnvtsyiqriGRtgRa 110
                 + +++ + + +v+++++++ +++   e++l++f + ++d+L+ t+++++G+d+p v+lV +++++            ++ +++ q +GR gR+
  CCG93323.1 530 EAIQQLFcSARVLRMDSDTMKKKgaVERALRAFGERQFDILVGTQMVSKGLDFPHVSLVGIVSIDgllhlpdfraseKSFQQLLQVSGRSGRG 622
                 4444444778999999986655412679***********************************99888888888777778************7 PP

>> PriA_CRR  PriA DNA helicase Cys-rich region (CRR) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.33   4.9e+02      15      27 .]     465     477 ..     463     477 .. 0.82
   2 !   35.3   1.9   5.6e-12   8.4e-09       1      25 [.     478     502 ..     478     503 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.33
    PriA_CRR  15 nrLrCHyCgyteP 27 
                  +L+C  Cgy  P
  CCG93323.1 465 SSLQCSDCGYVLP 477
                 679*******766 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 5.6e-12
    PriA_CRR   1 CpnCdvsltyHksrnrLrCHyCgyt 25 
                 CpnC++sl++Hk+ + L CH C+y+
  CCG93323.1 478 CPNCSISLSFHKNLGILNCHLCNYS 502
                 ***********************97 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.3e-06    0.0019       1      55 [.     210     264 ..     210     278 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.3e-06
                 ---HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEE CS
        PIF1   1 qLneeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrsegkivla 55 
                 +L++eQ ++++ i e +++  ++ + + G  G+gKt ++ + ++k+ +++k+vl 
  CCG93323.1 210 CLTKEQSHAVRLIEEEMHKGLPQPILLFGVTGSGKTEVYMRTIEKCLTQKKQVLL 264
                 69*************************************9999999988888874 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     5e-05     0.074       8      52 ..     219     263 ..     215     278 .. 0.90
   2 ?    0.1   0.1       0.4   6.1e+02      37      63 ..     440     466 ..     437     469 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5e-05
    ATPase_2   8 lkeleeilerepneiyfiYGpegsGKtaLlkeiienledkdkyvi 52 
                 ++ +ee + ++  ++++++G  gsGKt + ++ ie+ + ++k+v+
  CCG93323.1 219 VRLIEEEMHKGLPQPILLFGVTGSGKTEVYMRTIEKCLTQKKQVL 263
                 6779999999**************************999888876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.4
    ATPase_2  37 lkeiienledkdkyviyyialreesis 63 
                 lke+ie++++ ++++i yi+ r++s+s
  CCG93323.1 440 LKEAIEKRLERKEQIILYINHRGYSSS 466
                 799*****9999999999999998865 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0014       2.2     116     204 ..      60     150 ..      42     162 .. 0.82
   2 !    5.8   0.0    0.0037       5.5      17      49 ..     233     265 ..     226     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0014
  TrwB_AAD_bind 116 vlaetlrelvrekkksn.aallralltadleeLkellagteaaalvaeeaertaasiratlatnlevlelLaekgerFSireWleeede.s 204
                    +++++l++  +  k+   ++  ++l+ +++ +L++++a++  ++l++  ++    sirat++++ ++l  L+++ ++ Si+  +++ ++ +
     CCG93323.1  60 IVVDILEKQNSALKPLLcRENKELLVPQNILKLCKWIADYYCSPLISALQAALPDSIRATIKPKEDLLLSLPAHLDPLSIQSKIKRAKKeK 150
                    55555555555555555466778889999*********************************************99*****9999887743 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0037
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairargdraivl 49 
                     il++G tGsGKt++    +++   ++++++ l
     CCG93323.1 233 PILLFGVTGSGKTEVYMRTIEKCLTQKKQVLLL 265
                    689************999999999888887765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.6e-05     0.068      11     113 ..     232     341 ..     223     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelle.........eaeeekkl 100
                 +++l+ +  G+GKT+v +  ++ ++ ++++ +  +  +++t +  ++++ r +a ga++   H+   +   ++ t +  +l+         +++   ++
  CCG93323.1 232 QPILLFGVTGSGKTEVYMRTIEKCLTQKKQVLLLVPEISLTPQLLERIKARFTAQGASIGCWHSR--ISRSEKATLWYDILRgkinilvgtRSALFAPF 328
                 6899**************99999999997767777788999999999999999999999999977..78888888888888888888877644555666 PP

      AAA_19 101 qeeellivDEfqd 113
                  +  l+ivDE  +
  CCG93323.1 329 PSLGLIIVDEEHE 341
                 4444888888665 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       7.7   1.1e+04      30      35 ..     467     472 ..     460     475 .. 0.57
   2 ?   12.5   0.7   7.1e-05      0.11       3      36 ..     478     513 ..     476     518 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7.7
                     EE-SSS CS
  zinc-ribbons_6  30 alCpeC 35 
                       C +C
      CCG93323.1 467 LQCSDC 472
                     344444 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 7.1e-05
                     -SSS-S--E.E-S.SEEE-TTT--EEEEEEE-SSS- CS
  zinc-ribbons_6   3 CpeCqqele.krg.eqyhCeaCqedlkkealCpeCe 36 
                     Cp+C   l+ +++   ++C+ C+ + ++  +Cp C+
      CCG93323.1 478 CPNCSISLSfHKNlGILNCHLCNYSASVPSFCPMCR 513
                     ********974445889******************7 PP

>> A2L_zn_ribbon  A2L zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.8     0.049        73      20      31 ..     465     476 ..     463     478 .. 0.83
   2 ?    4.9   1.4     0.015        23      13      31 ..     485     503 ..     478     505 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.049
  A2L_zn_ribbon  20 gylvCieCgasf 31 
                    + l+C +Cg++ 
     CCG93323.1 465 SSLQCSDCGYVL 476
                    5699*****985 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.015
  A2L_zn_ribbon  13 gilnseqgylvCieCgasf 31 
                      + ++ g+l+C  C++s+
     CCG93323.1 485 LSFHKNLGILNCHLCNYSA 503
                    5567899**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 5299.49
//
Query:       CCG93324.1  [L=69]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-25   88.4   0.1    3.1e-25   88.2   0.1    1.0  1  Dodecin   Dodecin
  ------ inclusion threshold ------
      0.053   13.2   0.0      0.057   13.1   0.0    1.0  1  LXG       LXG domain of WXG superfamily
       0.08   13.0   0.1      0.082   13.0   0.1    1.1  1  Spo0A_C   Sporulation initiation factor Spo0A C terminal


Domain annotation for each model (and alignments):
>> Dodecin  Dodecin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.1   5.1e-29   3.1e-25       1      64 []       5      68 ..       5      68 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 5.1e-29
                EEEEEEEEEEESS-HHHHHHHHHHHHHHH-SSEEEEEEEEEEEEECTTCCEEEEEEEEEEEE-S CS
     Dodecin  1 VyKvielvGsSpkSwedAiqnAiaeAsktlrnirwveVketrahvedgkiaeYqvtlkvgFrle 64
                VyK+++++G+S++S+++A++nAi++A+ktlrn++w+eVke+r++v++     +qv++++gFrle
  CCG93324.1  5 VYKIVHVIGTSSESIQHAVRNAIERANKTLRNLDWFEVKEIRGSVNKEGEPLFQVEVRIGFRLE 68
                9********************************************999999***********97 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.5e-06     0.057     128     167 ..       4      43 ..       1      51 [. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.5e-06
         LXG 128 svsdivslpelddsevkdslqkakkkvqetiekledfdqe 167
                 +v +iv++   +++++++ ++ a++ +++t+++l+ f+ +
  CCG93324.1   4 KVYKIVHVIGTSSESIQHAVRNAIERANKTLRNLDWFEVK 43 
                 7889******************************999865 PP

>> Spo0A_C  Sporulation initiation factor Spo0A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.4e-05     0.082      44      71 ..       7      34 ..       1      56 [. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
     Spo0A_C 44 evAkkykttpsrVeraIrhaIevaWekg 71
                ++ +  +t+++++++a+r+aIe+a ++ 
  CCG93324.1  7 KIVHVIGTSSESIQHAVRNAIERANKTL 34
                4667899***************996654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 484.43
//
Query:       CCG93325.1  [L=160]
Description: Cytosine/adenosine deaminase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-21   76.6   0.0    1.4e-21   76.3   0.0    1.1  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    6.7e-21   74.5   0.0    7.6e-21   74.3   0.0    1.1  1  MafB19-deam      MafB19-like deaminase
     0.0027   17.8   0.1     0.0043   17.2   0.1    1.5  1  SNAD4            Secreted Novel AID/APOBEC-like Deaminase 4
     0.0077   16.3   0.0      0.013   15.5   0.0    1.3  1  APOBEC2          APOBEC2
  ------ inclusion threshold ------
      0.016   15.3   0.0      0.024   14.7   0.0    1.3  1  APOBEC3          APOBEC3
      0.017   15.2   0.1      0.038   14.1   0.0    1.5  2  NAD1             Novel AID APOBEC clade 1
      0.018   15.0   0.0      0.024   14.6   0.0    1.2  1  APOBEC_N         APOBEC-like N-terminal domain


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   5.3e-25   1.4e-21       5     100 ..       8     105 ..       4     106 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 5.3e-25
                      HHHHHHHHHHHHHHH.TTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.TSSCETTEEEEEEE--BHHHHHHHHHHT-SE CS
  dCMP_cyt_deam_1   5 ekllelalkaakeaq.kcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaakn.ggsklegatlyvtlePCsmCakaiiqsgikk 96 
                      e +l+la ++ak+ + + +  ++Gav+v +ge i++++n+    +++t+HAE++Ai+ aak+  + +l+g+++y++ ePC+mC  ai ++gi+k
       CCG93325.1   8 EFWLRLAFELAKYGSeQGEGGPFGAVVVLQGEAIGLAHNEVLSTQDPTAHAEILAIRRAAKKlAKFDLNGTIIYCSSEPCPMCLSAIYWAGINK 101
                      67899********9999*********************************************6699**************************** PP

                      EEEE CS
  dCMP_cyt_deam_1  97 vvvg 100
                      +++g
       CCG93325.1 102 IYFG 105
                      *997 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0     3e-24   7.6e-21       6     107 ..      10     125 ..       5     151 .. 0.81

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 3e-24
  MafB19-deam   6 afrkalaevekatkike.dkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvygag 102
                  + r a ++++ +++++e  + gav+v +++ i+ ++ne    +++taHaEi a+++Aakkl++  l+++++y   epC+mC+ ai  ag+ k+ +g++
   CCG93325.1  10 WLRLAFELAKYGSEQGEgGPFGAVVVLQGEAIGLAHNEVLSTQDPTAHAEILAIRRAAKKLAKFDLNGTIIYCSSEPCPMCLSAIYWAGINKIYFGCS 107
                  556666677777766552699***************************************************************************** PP

  MafB19-deam 103 npks.............l 107
                   +++             l
   CCG93325.1 108 AEDAqkigfrdvflyeeL 125
                  999877776666553333 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.7e-06    0.0043      13      61 ..      45      95 ..      35     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.7e-06
       SNAD4 13 ekgvlknkke..haEllflekikseldpsqeyrvtwylswsPCaeCaekia 61
                +++vl++++   haE+l +++  ++l +      ++y s  PC+ C ++i+
  CCG93325.1 45 HNEVLSTQDPtaHAEILAIRRAAKKLAKFDLNGTIIYCSSEPCPMCLSAIY 95
                456666644457**********99998888888889***********9986 PP

>> APOBEC2  APOBEC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.2e-06     0.013      40      88 ..      46      93 ..      34      97 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.2e-06
     APOBEC2 40 rGvlenkekkcHaEllflskvkkkkleekkeykvtwyvswsPCaeCaee 88
                + vl+ +++++HaE+l +++  k kl +       +y+s+ PC+ C + 
  CCG93325.1 46 NEVLSTQDPTAHAEILAIRRAAK-KLAKFDLNGTIIYCSSEPCPMCLSA 93
                45677778999*********999.565555566678**********876 PP

>> APOBEC3  APOBEC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   9.5e-06     0.024      28      68 ..      53      92 ..      35     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.5e-06
     APOBEC3 28 kekkHAEerfidkirslnldslkqykitcylswsPcpkCae 68
                  + HAE+ +i++ ++ +l + +    ++y s  Pcp C +
  CCG93325.1 53 DPTAHAEILAIRRAAK-KLAKFDLNGTIIYCSSEPCPMCLS 92
                4678***********9.9*********************65 PP

>> NAD1  Novel AID APOBEC clade 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.5e-05     0.038      45      90 ..      46      95 ..      34      99 .. 0.69
   2 ?   -2.2   0.0       1.5   3.7e+03     117     126 ..     142     151 ..     121     159 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
        NAD1 45 n......eskcHaEllflnkikslklldpsqkykvtwylswSPCseCaskla 90
                n      + ++HaE+l ++   +    + + + + ++y+s+ PC+ C s ++
  CCG93325.1 46 NevlstqDPTAHAEILAIRRAAKKLA-KFDLNGT-IIYCSSEPCPMCLSAIY 95
                43333233445*****9999844433.4555555.57**********99886 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
        NAD1 117 qegLrsLasa 126
                 +egL  L+s+
  CCG93325.1 142 EEGLSILKSW 151
                 4555555554 PP

>> APOBEC_N  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   9.2e-06     0.024      34     137 ..      45     146 ..      24     150 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.2e-06
                 EEEEEEEE-..SSTBCHHHHHHHHHHHHT--.TTEEEEEEEEESS-S-HH....H........HHHHHHHHHH-TTEEEEEEESE-ST...STSHHHHH CS
    APOBEC_N  34 kkGvLrnqsgaaaskHaEelflediedqelrepkkkyeitlYvswsPChessdeC........aeklaaflkkeknvelkifvsrlykakwwekpkeae 124
                 ++ vL  q      +HaE l +++  ++ l  + +    ++Y+s+ PC+     C        ++k++   + e+  ++     +ly+    ++ ++++
  CCG93325.1  45 HNEVLSTQDP---TAHAEILAIRRAAKK-LA-KFDLNGTIIYCSSEPCPM----ClsaiywagINKIYFGCSAEDAQKIGFRDVFLYEE-LKKPSNQRQ 133
                 5556666654...58*****99975544.33.234555568*********....95555555566666666666888888888888884.335556666 PP

                 H..HHHHHHTTEE CS
    APOBEC_N 125 keglrllkqagve 137
                  + ++ll+++g++
  CCG93325.1 134 LQSIQLLREEGLS 146
                 6888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1146.35
//
Query:       CCG93326.1  [L=52]
Description: hypothetical protein MFUM_970097 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       170  (0.00948185); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 419.27
//
Query:       CCG93327.1  [L=43]
Description: hypothetical protein MFUM_970098 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 315.33
//
Query:       CCG93328.1  [L=224]
Description: Nitric-oxide reductase subunit C [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-08   33.8   0.1    1.4e-07   32.6   0.1    1.6  1  Cytochrom_C      Cytochrome c
      3e-05   24.2   0.2    0.00014   22.1   0.1    2.1  2  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
  ------ inclusion threshold ------
      0.092   12.8   0.0       0.15   12.1   0.0    1.4  1  DUF5343          Family of unknown function (DUF5343)


Domain annotation for each model (and alignments):
>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   2.3e-11   1.4e-07       3      89 ..     115     203 ..     113     206 .. 0.67

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 2.3e-11
                  -HHHHH.HTTGGGTB-SSSBSSS...........--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHH CS
  Cytochrom_C   3 rGkelf.tanCaaCHgvegggakqgg.......gptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYLk 89 
                  +Gk +   +nC+ CH++ g+ga  ++        p      ++   +  + ++++ +a  ++ +++e +  ++  ++++++lte+e+++++ YLk
   CCG93328.1 115 KGKLVIqSRNCMDCHTLLGNGAYFAPdltkswlDP-----KWETMIQPMTGMKTKEEAMAKWLQNPEYYGTWQR-RMPNLKLTEAEAKAIVGYLK 203
                  89999988**************9884443333333.....3333344444444444444445677777665555.34458**************8 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.7   4.2e+03      49      62 ..      98     111 ..      87     114 .. 0.73
   2 !   22.1   0.1   2.4e-08   0.00014       4      67 .]     114     202 ..     111     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.7
  Cytochrome_CBB3  49 pafggqlsdeelwa 62 
                      p fg+q s++e+  
       CCG93328.1  98 PFFGKQWSEKEATS 111
                      66788888888765 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 2.4e-08
  Cytochrome_CBB3   4 aaGaalykk.nCasCHg.kggag...pslagrdwep................dalvdiiknG......kgaMpafggqlsdeelwalvaYl 67 
                      ++G+ + ++ nC  CH+  g+++   p+l++++++p                +a+ + ++n        ++Mp    +l+++e++a+v Yl
       CCG93328.1 114 TKGKLVIQSrNCMDCHTlLGNGAyfaPDLTKSWLDPkwetmiqpmtgmktkeEAMAKWLQNPeyygtwQRRMPNL--KLTEAEAKAIVGYL 202
                      6777788877*******6555558999999998888887788888888888877777776663333334799998..59*********997 PP

>> DUF5343  Family of unknown function (DUF5343)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.6e-05      0.15      28      61 ..     183     216 ..     158     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.6e-05
     DUF5343  28 dflktlglkssnasliiplLkflGfldedGkpte 61 
                 + + +l+l++ +a++i+ +Lkf+  +d +G p+ 
  CCG93328.1 183 RRMPNLKLTEAEAKAIVGYLKFMSAIDTNGFPDH 216
                 567789*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1638.75
//
Query:       CCG93329.1  [L=473]
Description: putative nitric oxide reductase B subunit [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-62  212.0  64.1    1.9e-62  211.6  64.1    1.2  1  COX1      Cytochrome C and Quinol oxidase polypeptide I
  ------ inclusion threshold ------
        1.8    8.5   9.3        4.4    7.3   0.3    3.9  3  PDR_CDR   CDR ABC transporter


Domain annotation for each model (and alignments):
>> COX1  Cytochrome C and Quinol oxidase polypeptide I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.6  64.1   2.1e-66   1.9e-62       2     426 ..      13     437 ..      12     446 .. 0.84

  Alignments for each domain:
  == domain 1  score: 211.6 bits;  conditional E-value: 2.1e-66
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCTCT....-HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSS-S-HHHHHHHHHHHHHHHHHHHHH CS
        COX1   2 igllylilalvlllvggllgllirlqlafp....dletynqlrtlHgnlmiflfatpfilgfgnylvplllgardlafprlnalsfwlvvlgvvlllls 96 
                 +++ y i+al+l+ ++ ++gl+i+ q++ p    +l++++  r++H+n+mi++++++f +g +++++pl++ +r+++  +l +++f++++++v +++l 
  CCG93329.1  13 LAIGYWITALCLFGIQLIFGLIIAYQYIRPeflhNLLNFSICRMIHLNTMILWLLFGF-IGGIYWFLPLET-EREVVGIFLGKIAFIVLTCAVGIVALV 109
                 6889************************99777777**********************.***********6.***************444444443333 PP

                 HH....CS........S-STTTTTTTC.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCGS-HHHHHHHHHHHH.HHHHCHHHHHHHHHCHH CS
        COX1  97 ll....ga........attgwteYaplsevdlwllglllvvvssllgainfivtilkrrapgmtvaklplfvwavlatail.illalpvlalallllll 182
                 +l    g+        +t+g+ eY +  +++++ +g++ v   s+  ++n+++ i+k ++  ++ +     +w +++ +++ i +++++++++      
  CCG93329.1 110 FLfvqiGKgemltlwlITEGR-EYIE--APRWADIGIVAV--FSI-IFFNVFASIWKAKK--LKGM-----LWVLTVDLLAiIGFYIAGMFFSP----- 190
                 3334555467999999****6.***9..999888888866..666.69********9773..3333.....67666654440444444444443..... PP

                 HHHCT-SSSCE-HHHHHHHHHHHHTHHH.HHHHHHHHHHHHHHHHHHHT..SCCCTHHHHHHHHHHHHHHCCCCGGGGTTTSSS-HHHHHHHHHHHHHT CS
        COX1 183 drslgkffspgdplldqhlfWffgHpeV.yililpalgivyyilpkfag..rplfsyklsvlafililflsflvwaHHlfttglpewlkalgsvfslli 278
                            +  +dq+++W+++H++V  ++++ + ++v +il++++g  r+++ + +++l+++li+ +++l+ +HH+f++g pe++  +g +fs+l+
  CCG93329.1 191 -----------NISVDQFWWWWVVHLWVeATWEVLVGVLVGWILMTVLGtpRKII-EGWLYLEVFLIFGTGILGLGHHYFWIGAPEYWLGIGGFFSALE 277
                 ...........3389**********************************988888.******************************************* PP

                 HHHHHHCCCHHHHCCTTS-CH.C.HHHHHHHHHHHHHH.HHHHHHHHHHTSHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH...SB-- CS
        COX1 279 avPsglkvfnwlatlwrgsir.f.ktpmlfflgfavlf.iigGltGvllalpsvnyvvhntywvvaHfHlvllgavvfllfaaiyyllpklt...grml 371
                  +P+++ ++  ++     +++ + k +++++++ a+ + i++G++G++++lp++n+++h+t++++aH+Hl+++ga+v + + +iy +l k+    g  l
  CCG93329.1 278 PLPLVAMIVHAVYDAGVHRLKtVnKPAFFWIVAQAFGNfIGAGVWGFMHTLPQINLYSHGTQLTAAHGHLAFFGAYVATNLSLIYTALQKIRlheGSVL 376
                 *******999999997788888889999**********9*************************************************98876245688 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHT.THBSSSS...T...--SCCCCHHHCHHHHHHH CS
        COX1 372 serlaklhfwllfiGlvlmflpmhilGll.gmprraa...d...yksfletvpelqplnvlr 426
                 +  l k+ f+ l++ ++ ++ p++++G++  +  ra    +   y    + +p ++  +++r
  CCG93329.1 377 DGSLWKWVFIGLILTMLGITAPLTVAGFAqTFIERAVggsTwqaY-IDGQMHPWFKESMIWR 437
                 9********************************999944322223.2233444555555555 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.6      0.14   1.3e+03      54      81 ..      94     121 ..      86     123 .. 0.86
   2 ?    7.3   0.3   0.00049       4.4      40      66 ..     131     157 ..     126     172 .. 0.76
   3 ?    4.2   0.1    0.0046        41      41      66 ..     430     456 ..     411     470 .. 0.58

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.14
     PDR_CDR  54 iaflifflalyllatelisaekskgevl 81 
                 iaf+++ +a+ ++a+ ++  + +kge+l
  CCG93329.1  94 IAFIVLTCAVGIVALVFLFVQIGKGEML 121
                 7999999999999999999988888887 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00049
     PDR_CDR  40 gyssshlwrnfgiliaflifflalyll 66 
                 +y ++ +w ++gi+ +f i+f+ + + 
  CCG93329.1 131 EYIEAPRWADIGIVAVFSIIFFNVFAS 157
                 5777899***********999876443 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0046
     PDR_CDR  41 yssshlwr.nfgiliaflifflalyll 66 
                 +++s +wr  fgil+  + + l++ ll
  CCG93329.1 430 FKESMIWRmGFGILFFVCYLLLVIDLL 456
                 677778873455554444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       841  (0.0469072); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.37
# Mc/sec: 3791.70
//
Query:       CCG93330.1  [L=106]
Description: conserved membrane hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0022   17.3   4.4     0.0026   17.1   4.4    1.0  1  UbiA          UbiA prenyltransferase family
  ------ inclusion threshold ------
       0.31   10.3   8.4       0.36   10.1   8.4    1.0  1  Peptidase_U4  Sporulation factor SpoIIGA
       0.35   10.3   9.0       0.28   10.6   8.2    1.3  1  Clc-like      Clc-like
        4.5    5.5  10.9        5.2    5.2  10.9    1.0  1  DUF2070       Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   4.4   5.8e-07    0.0026      88     179 ..       7     105 ..       2     106 .] 0.75

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.8e-07
        UbiA  88 lnpltallgll.allly.vvYt.glrlKrrtllgtvvggiafglppllgwaavtgsl..sllalllalavflltwaialan...dlrdregDrkagikt 178
                 l++l+a l+++ +  ly ++Y  g rlK + ++  +   +af ++  + + +v+  +   + +ll++ ++  l+++ a+ +    ++++eg +++ +kt
  CCG93330.1   7 LGLLMASLSFVlTAGLYaFFYAfG-RLKESFFWELFSFIFAFLMICSGFFLVVSPAFtlFWKLLLIFSIFSYLIIPKAMLWvvkKIHQKEGEEEGRLKT 104
                 455555555532444566999999.*******8888888888888777777799998887777777777788888888888888999999999888888 PP

        UbiA 179 l 179
                 l
  CCG93330.1 105 L 105
                 6 PP

>> Peptidase_U4  Sporulation factor SpoIIGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   8.4   8.1e-05      0.36      63     144 ..      14      94 ..       2     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8.1e-05
  Peptidase_U4  63 llkilvsllmv.liafgpkslkeflkalllfylvsfllgGilfalsyll.lksknllvlllgalvaylllkllvkiikkkkkke 144
                   l+ +l + l++ + afg  + + f++ + ++++  ++++G+ +++s ++ l    +++ll+  ++ yl++  ++ ++ kk+ ++
    CCG93330.1  14 LSFVLTAGLYAfFYAFGRLKESFFWELFSFIFAFLMICSGFFLVVSPAFtL---FWKLLLIFSIFSYLIIPKAMLWVVKKIHQK 94 
                   333444444443558999998899999999999999999999999987732...399999999999999997777766665554 PP

>> Clc-like  Clc-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   8.2   6.2e-05      0.28     101     151 ..      29      79 ..      19      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.2e-05
    Clc-like 101 ygWhkavlilllislllaalsllsgicasvssseailftillvlaallalv 151
                 +g  k  ++  l+s ++a+l ++sg++ +vs+++++++++ll+++ +  l+
  CCG93330.1  29 FGRLKESFFWELFSFIFAFLMICSGFFLVVSPAFTLFWKLLLIFSIFSYLI 79 
                 45556788999************************9999999998776554 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  10.9    0.0012       5.2      45     123 ..       9      89 ..       2      95 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0012
     DUF2070  45 glpalvaflltlpvlrilggrltykrslflalltelivviisllaillsall....qalvllalvlslalvfalrllvlvavs 123
                 +l a ++f+lt  +  ++     +k s+f  l++ +++++++  + +l+  +    + +  l l++s++++++++  +l++v 
  CCG93330.1   9 LLMASLSFVLTAGLYAFFYAFGRLKESFFWELFSFIFAFLMICSGFFLV--VspafTLFWKLLLIFSIFSYLIIPKAMLWVVK 89 
                 3446666667666666653334556667777777766666333332222..12233555556666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 710.36
//
Query:       CCG93331.1  [L=172]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00018   21.8  11.6     0.0012   19.1  11.6    2.2  1  DUF1269          Protein of unknown function (DUF1269)
    0.00036   20.2   0.1     0.0011   18.7   0.1    1.7  1  DUF3341          Protein of unknown function (DUF3341)
     0.0024   18.3   0.3       0.28   11.7   0.0    2.4  3  YflT             Heat induced stress protein YflT
  ------ inclusion threshold ------
        0.1   12.7   1.3       0.17   12.0   1.3    1.3  1  HDAC4_Gln        Glutamine rich N terminal domain of histone 
        1.1    9.7  16.1      0.085   13.2   5.1    2.2  2  Romo1            Reactive mitochondrial oxygen species modula
        1.1    9.3  22.7        2.3    8.3   8.1    2.3  2  Gly-zipper_Omp   Glycine zipper


Domain annotation for each model (and alignments):
>> DUF1269  Protein of unknown function (DUF1269)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1  11.6   3.8e-07    0.0012       4      78 ..      67     160 ..      56     171 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.8e-07
     DUF1269   4 GalwGllvGllf.lnPllGaa...................vGAaaGAlvgalsdvgidddflkelgeklkpgtsalfllvekatvdkvlealakl 78 
                 G+l G+lvG  f ++P +G                     +G+ aGA+ g ls +gi+++ + +++e+lk+g+  l++  ++ ++++  + l+ +
  CCG93331.1  67 GGLFGILVGAAFvWVPGFG-PlivagplsaallggleglvAGGVAGAALGFLSGLGIQKQHILKFEEHLKAGKYLLVIRGTEEEIERAKKILEAT 160
                 4444444444332345444.03455677777888888888**************************************99997776554444332 PP

>> DUF3341  Protein of unknown function (DUF3341)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   3.6e-07    0.0011       4     168 ..       7     165 ..       5     167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.6e-07
                 ------SSHHHHHHHHHHHSS---.......-EEB-SS--TT-TTTSS--SS-STHHHHHHHHHHHHHHHHHHHIIIIISS---STT--SS-HHHHHHH CS
     DUF3341   4 laeFddedallkAakklreagykk.......ldvysPfpvhgldealglkksrlpliallgGllGlalalllqvytsvvdyplnigGkPlfslpafipi 95 
                  a++++ +++ kA+k l+++++          d+ s  +vhg  +a ++ k+   +   +gGl+G++++ +++++      pl+++G    +l a ++ 
  CCG93331.1   7 SAVYSSLEDAEKALKSLEQSQFPLtrvsilaQDLSSERKVHGYITAGDIAKTGATIGGWVGGLFGILVGAAFVWVPGFG--PLIVAG----PLSAALLG 99 
                 67788888888888888877765422333446779999**********************************7777765..*****9....56778889 PP

                 HTHHHHHHHHHHHHHTTTTTT-S-----TTTT-TTGGG.TTTS---EE--S-SS---HHHHHHTTSS--S--- CS
     DUF3341  96 tFEltvLfaalatvlgllllnglprlyhpvfkaenfdrratdDkffllieatdpkfdeeelkalLkelgAeev 168
                   E  v +++ ++ lg+l   g+ + +h      +f++    +k++l+i+ t+++   e++k++L+ +++ e 
  CCG93331.1 100 GLEGLVAGGVAGAALGFLSGLGI-QKQH----ILKFEEHLKAGKYLLVIRGTEEE--IERAKKILEATQPLEM 165
                 99**************9999999.4443....5578899999***********76..***********99886 PP

>> YflT  Heat induced stress protein YflT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.017        50       3      38 ..       9      44 ..       8      73 .. 0.84
   2 !   11.7   0.0   9.5e-05      0.28      75     100 .]     117     142 ..     107     142 .. 0.93
   3 ?   -3.1   0.1         4   1.2e+04      81      94 ..     146     159 ..     146     161 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.017
        YflT  3 vyeneeellsaieelkaeGyneddiyvvakdkdrle 38
                vy++ e++ +a+++l+++ +  +   ++a+d +  +
  CCG93331.1  9 VYSSLEDAEKALKSLEQSQFPLTRVSILAQDLSSER 44
                899**************************9977555 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 9.5e-05
        YflT  75 leslGltedeaeeyeeeldeGkillv 100
                 l+ lG++++ + ++ee l++Gk+llv
  CCG93331.1 117 LSGLGIQKQHILKFEEHLKAGKYLLV 142
                 789*********************96 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 4
        YflT  81 tedeaeeyeeelde 94 
                 te+e+e+ ++ l++
  CCG93331.1 146 TEEEIERAKKILEA 159
                 57888888877765 PP

>> HDAC4_Gln  Glutamine rich N terminal domain of histone deacetylase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.3   5.8e-05      0.17      40      85 ..     123     168 ..     121     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.8e-05
   HDAC4_Gln  40 trqheaqlqehikqqqellalkrqqellekqrklekqrqerelekq 85 
                  +qh  +++eh+k  + ll+++   e +e+ +k+ +  q  e++ +
  CCG93331.1 123 QKQHILKFEEHLKAGKYLLVIRGTEEEIERAKKILEATQPLEMQVH 168
                 68************************9**99999888777666554 PP

>> Romo1  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.1   2.8e-05     0.085       6      39 ..      56      89 ..      52     101 .. 0.85
   2 ?    1.0   4.6      0.19   5.8e+02       9      25 ..     103     119 ..      94     126 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.8e-05
       Romo1  6 ikmGalmGaaVGlaiGllfGtfsalryglrgrgl 39
                 k+Ga +G+ VG+ +G+l+G + +   g+++  +
  CCG93331.1 56 AKTGATIGGWVGGLFGILVGAAFVWVPGFGPLIV 89
                599*******************999999988665 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.19
       Romo1   9 GalmGaaVGlaiGllfG 25 
                 G++ G++ G+a+G+l G
  CCG93331.1 103 GLVAGGVAGAALGFLSG 119
                 55556666666666555 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   8.1   0.00078       2.3      14      41 ..      48      77 ..      46      79 .. 0.73
   2 ?    6.7   6.7    0.0024       7.2      11      39 ..      96     123 ..      84     126 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00078
  Gly-zipper_Omp 14 Ggavgg..rgtGaliGAavGaavGgliGaa 41
                    G+++ g  + tGa iG+ vG++ G l+Gaa
      CCG93331.1 48 GYITAGdiAKTGATIGGWVGGLFGILVGAA 77
                    566543124699999999999999999986 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0024
  Gly-zipper_Omp  11 aliGgavggrgtGaliGAavGaavGgliG 39 
                     al+Gg  g  ++G ++GAa+G ++G +i 
      CCG93331.1  96 ALLGGLEGL-VAGGVAGAALGFLSGLGIQ 123
                     556666553.5666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1179.49
//
Query:       CCG93332.1  [L=46]
Description: hypothetical protein MFUM_970103 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 325.78
//
Query:       CCG93333.1  [L=212]
Description: Superoxide dismutase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-19   68.4   1.8    1.3e-18   67.0   0.1    2.1  2  Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal do


Domain annotation for each model (and alignments):
>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2     0.049   8.9e+02      12      39 ..      62      89 ..      54     102 .. 0.79
   2 !   67.0   0.1   7.4e-23   1.3e-18       2     101 ..     109     207 ..     108     208 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.049
                HHSSHHHHHHHHHHHHHHSSSSEEEEEE CS
    Sod_Fe_C 12 dfgslekfkkefkaaalavfgsGwawLv 39
                +f+++e+ +++fk++ ++ +   w  L+
  CCG93333.1 62 SFQNTEAAEESFKKELVTSKIGQWFSLY 89
                5888888999999999888777787765 PP

  == domain 2  score: 67.0 bits;  conditional E-value: 7.4e-23
                 -HHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETT.TEEEEEEEETTTBGGGGTTCEEEEEE-SGGGTHHHHTT-HHHHHHHHGGGBBHHHH CS
    Sod_Fe_C   2 sgelaeaieedfgslekfkkefkaaalavfgsGwawLvldkk.kkLeivttknqdnplvkeakplLalDvwehAYyldyqnkradYieafwnvvnWkev 99 
                 +g+++e +e +f+s+ +fk +fk +al   ++Gw+wL++d+  +kL  ++++ +d    ++++plLa+D+ ehAY  d+  ++++Yie+f+n ++Wke+
  CCG93333.1 109 EGKIKELLEINFDSVVRFKLDFKIKALY--STGWVWLIMDHYtGKLFNLSSNREDAFPFSGMSPLLAIDLAEHAYESDFGSDKEAYIEEFFNDLDWKEI 205
                 58999******************99998..99*******987579999999999998888999***********************************9 PP

                 HH CS
    Sod_Fe_C 100 ee 101
                 e+
  CCG93333.1 206 EK 207
                 97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1503.13
//
Query:       CCG93334.1  [L=567]
Description: DNA repair protein ATPase, RecN [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-24   84.9   0.0    1.5e-23   83.4   0.0    1.8  1  SMC_N           RecF/RecN/SMC N terminal domain
    1.5e-14   54.9   4.6    1.5e-14   54.9   4.6    3.7  3  AAA_23          AAA domain
    2.3e-08   34.1  12.4    8.9e-07   28.9  12.4    2.5  1  AAA_15          AAA ATPase domain
    1.3e-06   28.4   4.9     0.0033   17.3   0.1    2.9  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    0.00056   19.6   0.0      0.001   18.7   0.0    1.4  1  AAA_29          P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.012   15.9   3.9      0.057   13.7   0.0    3.5  4  AAA_22          AAA domain
      0.089   12.7   0.5       0.48   10.3   0.0    2.3  2  RsgA_GTPase     RsgA GTPase
      0.097   13.0   2.7       0.29   11.5   1.0    2.6  2  DinI            DinI-like family
       0.17   12.0   3.6        1.5    9.0   0.2    2.6  2  Condensin2nSMC  Condensin II non structural maintenance of ch
       0.25   11.7   6.8       0.55   10.6   0.3    3.3  2  AAA_16          AAA ATPase domain


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.0   8.3e-27   1.5e-23       4     216 ..       4     511 ..       1     515 [. 0.95

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 8.3e-27
                 EEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT..TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   4 rleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGer.sakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisr 101
                 +l+ien   +  ++ + ++ +++++++G+ G+GKs ++d+++F+LGer s + l++++   ++  + + +++   +v+ +f++++ + + +++++ ++r
  CCG93334.1   4 KLRIENLALI--EELEWDLVPGLNVLTGETGAGKSIVIDSLKFLLGERaSLTFLKNKEKPGIVEGEFQLSETFWTRVSDLFKEKGLD-ELDSSSFILRR 99 
                 6677777666..68889999***************************934566788888888888888888999**********999.99********* PP

                 EEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT................................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................. RF
       SMC_N 102 rvkrkgeseykingkevtkkevsellesagiske................................................................. 135
                 ++  +g+s+ +ing+ +  + ++  l +  i+                                                                   
  CCG93334.1 100 EIRPSGSSRQFINGELIPLSLLK-ELGDNLIDVLgphdhqslfdkkiqlklldtfgslnelshrvktlyenhqkllkkknslsleellkkkqrlneqlq 197
                 ****************9997655.56777888778889************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CCG93334.1 198 eivaanlipgeeeaidqklnlartgwkiydclgairgllsqnnpsilsllsslhrhlcalekfdpqkgaqaialeqsaahdlleldrliedyfskieid 296
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CCG93334.1 297 peelekleqrknflenlkrkyalqidelidykskiseqlaeikeeenlarniakeelqllealqnealhlsskrkktaeelitsiqtvlqslgfaqsgf 395
                 *************************************************************************************************** PP

                 ...................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSH CS
                 ...................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 ...................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislre 199
                                                      S Ge + v+laL     +v+p p+ ++Deida++  +   kv++llke s n Q+++i++  
  CCG93334.1 396 sisfdnkekvgpsgqdeieflfspnpgipckplkeIASSGEAARVMLALKAVFARVDPIPILVFDEIDANIGGEIAWKVSSLLKELSINHQILCITHLP 494
                 **********************************999*************999********************************************** PP

                 HHCCC-SCEEEEEEEET CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N 200 emlekadklvgvtkven 216
                  m +  d+ ++v+k+++
  CCG93334.1 495 SMAAGGDAHFKVMKESE 511
                 ************99654 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   4.6   8.6e-18   1.5e-14       1     195 [.       4     199 ..       4     202 .. 0.75
   2 ?   -8.7  22.5        10   1.8e+04     114     162 ..     303     342 ..     207     389 .. 0.50
   3 ?    0.1   0.3      0.55   9.9e+02     148     188 ..     521     565 ..     468     567 .] 0.53

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 8.6e-18
      AAA_23   1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgry.trsiererelsk 98 
                 kL+ien+  +++ e d+ +gl+++tG++GaGK+ ++d +k+ L+++++ +  k++++    + e++ +++  + v+  f+ k+ ++ + s    r +++
  CCG93334.1   4 KLRIENLALIEELEWDLVPGLNVLTGETGAGKSIVIDSLKFLLGERASLTFLKNKEKPGIVEGEFQLSETFWTRVSDLFKEKGLDElDSSSFILRREIR 102
                 79********************************************97666655554555555555543444444444655555446444444677777 PP

      AAA_23  99 kkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefelkdkkerleelekeleeled.ekkllekl..eqekekekeleeleeelee 194
                  +g+++++ ++el+  + l+++ ++l+++  +  +++lf ++ +    +l d++  l+el+   ++l +  +kll+k+  + ++e  k+ + l+e+l+e
  CCG93334.1 103 PSGSSRQFINGELIPLSLLKELGDNLIDVLGPHDHQSLFDKKIQL---KLLDTFGSLNELSHRVKTLYEnHQKLLKKKnsLSLEELLKKKQRLNEQLQE 198
                 88999***************************9999999999998...678899999999999988755155555555444444455555555555555 PP

      AAA_23 195 i 195
                 i
  CCG93334.1 199 I 199
                 4 PP

  == domain 2  score: -8.7 bits;  conditional E-value: 10
      AAA_23 114 ideleqfisellgskki.il.nlilflgqerfeefelkdkkerleelekel 162
                  +++++f++ +l++k++ ++ +li+++ + ++          +l+e+++e 
  CCG93334.1 303 LEQRKNFLE-NLKRKYAlQIdELIDYKSKISE----------QLAEIKEEE 342
                 111111111.1222222211122222222221..........111111111 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.55
      AAA_23 148 lkdkkerleelekeleeledekkllekl....eqekekekeleel 188
                 ++ +++rl+e+ + l  +++e+  l ++     + +++ek le+l
  CCG93334.1 521 EMVEEDRLKEIARMLGGENEEAIRLARKllsvAKGNKEEKSLEKL 565
                 133344777777777666655554444444443333334444443 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9  12.4     5e-10   8.9e-07       1     368 [.       1     496 [.       1     497 [. 0.59

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 5e-10
      AAA_15   1 MkIkkikikNFRslkdveidlseeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdvef................ 83 
                 M + k++i+N   +++ e dl + l+vl G+ ++GKS +++ l+++l +  +      +      ++++    + ++++  +f                
  CCG93334.1   1 M-LLKLRIENLALIEELEWDLVPGLNVLTGETGAGKSIVIDSLKFLLGERASLT----F----LKNKEKPGIVEGEFQLSETFwtrvsdlfkekgldel 90 
                 5.6799******************************************884444....2....223333334444444444444444446666655544 PP

      AAA_15  84 ........................................................aekekakeyektlkskekkkadlllkkkesdlkktikdkklkl 126
                                                                                                                    
  CCG93334.1  91 dsssfilrreirpsgssrqfingeliplsllkelgdnlidvlgphdhqslfdkkiqL------------------------------------------ 147
                 444444444445554444333333333333333333333333333322222222220.......................................... PP

      AAA_15 127 kknelsdekisvekkks.............kkelpkekeeklekekeelkid..kedlkklikkleeslkkee.......................... 184
                                 +             +++   e++ kl k+k++l+++   +++++l ++l+e++  +                           
  CCG93334.1 148 ----------------KlldtfgslnelshRVKTLYENHQKLLKKKNSLSLEelLKKKQRLNEQLQEIVAANLipgeeeaidqklnlartgwkiydclg 230
                 ................12222222222222222222222222222222222222222222222222222222244444666666666666666666666 PP

      AAA_15 185 ............................................................................................elknvlk 191
                                                                                                             el    +
  CCG93334.1 231 airgllsqnnpsilsllsslhrhlcalekfdpqkgaqaialeqsaahdlleldrliedyfskieidpeelekleqrknflenlkrkyalqidELIDYKS 329
                 666666666677777777777777777777777777777666666666666666666555666676666666665555555555555555554444445 PP

      AAA_15 192 saiiklllisakRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelkkilkkkidkikkfnykgkkneeieikdde 290
                 + +++l  i+++ n   +  +++  ll++l+++ l+       + + ++ ++e+ +++++  + l   +++ +  ++d+ +k++  g+++ e  ++ + 
  CCG93334.1 330 KISEQLAEIKEEENLARNIAKEELQLLEALQNEALHL------SSKRKKTAEELITSIQTVLQSL-GFAQSGFSISFDNKEKVGPSGQDEIEFLFSPNP 421
                 5555555555555555555555555555555555553......5666666777777777777777.666677777777766666666666666666777 PP

      AAA_15 291 elplnk....nGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHSphi 368
                  +p +     ++sG    + l+l+ ++a+ +     ++ il+++E++a++  +    +  llkel+ ++  Q+++ TH p +
  CCG93334.1 422 GIPCKPlkeiASSGEAARVMLALKAVFARVD-----PIPILVFDEIDANIGGEIAWKVSSLLKELSINH--QILCITHLPSM 496
                 77765322248********************.....*********************************..*******8876 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.8e-06    0.0033       1      62 [.      24      66 ..      24     110 .. 0.75
   2 !   11.2   1.9   0.00013      0.24     180     300 ..     369     495 ..     261     498 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.8e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefei 62
                lnvl+G  g+GKS ++d l++l + ++++++l+++                   e+p+  e 
  CCG93334.1 24 LNVLTGETGAGKSIVIDSLKFLLGERASLTFLKNK-------------------EKPGIVEG 66
                7*********************7654444444444...................44444444 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00013
      AAA_21 180 kekrllqrlvrslklveielsdlgegeeliasvderlrer........gvvflengdgqelparel..SdGt..krllalltallralkkgsllliDEp 266
                 k+k+ +++l+ s+++v   l +     ++ +s++++++e+          +++ ++ g +  + ++  S+G   + +lal + ++r ++  ++l++DE+
  CCG93334.1 369 KRKKTAEELITSIQTVLQSLGFA----QSGFSISFDNKEKvgpsgqdeIEFLFSPNPGIPCKPLKEiaSSGEaaRVMLALKAVFARVDPI-PILVFDEI 462
                 55555555555555555544444....455555555555555556665555555555555555555555554214457888888888888.******** PP

      AAA_21 267 EngLHPkllrrllellkelsrngaQviltTHSpl 300
                 ++++  ++  ++  llkels  + Q+++ TH p+
  CCG93334.1 463 DANIGGEIAWKVSSLLKELSI-NHQILCITHLPS 495
                 *********************.*********887 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.8e-07     0.001      16      47 ..      17      47 ..       2      56 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5.8e-07
      AAA_29 16 tieidlkgatlltGpsGsGKSTllDAiqalLv 47
                ++++   g  +ltG++G+GKS ++D++++lL 
  CCG93334.1 17 EWDLV-PGLNVLTGETGAGKSIVIDSLKFLLG 47
                55665.34689*****************9995 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.2e-05     0.057       7      70 ..      24      91 ..      21     121 .. 0.74
   2 ?   -2.8   0.1         4   7.2e+03      72      82 ..     179     189 ..     148     202 .. 0.49
   3 ?   -0.9   0.8         1   1.9e+03     109     109 ..     335     335 ..     270     391 .. 0.54
   4 ?    0.3   0.0      0.45     8e+02      84     105 ..     446     467 ..     409     493 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.2e-05
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaee....erpevvfvtlpsstsskdllrellralglelka 70
                + v+tGe+G+GK+ ++  l+  l e+a+ +     e+p++v+ + + s++  +  ++l+++ gl+  +
  CCG93334.1 24 LNVLTGETGAGKSIVIDSLKFLLGERASLTFlknkEKPGIVEGEFQLSETFWTRVSDLFKEKGLDELD 91
                5689*******************999999889888888888766666665555556666665555444 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4
      AAA_22  72 rlsseelleal 82 
                  ls+eell++ 
  CCG93334.1 179 SLSLEELLKKK 189
                 23333333333 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1
      AAA_22 109 l 109
                 l
  CCG93334.1 335 L 335
                 1 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.45
      AAA_22  84 qalraravielliiDEaqh.lrs 105
                   + + + i++l+ DE++  +  
  CCG93334.1 446 AVFARVDPIPILVFDEIDAnI-G 467
                 3333333389********966.3 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00027      0.48      84     120 ..       7      43 ..       2      53 .. 0.86
   2 ?   -0.8   0.1       0.7   1.3e+03      65      99 ..     349     383 ..     290     395 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00027
                  TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  84 aktkegleelkellkdktsvlvGqSGvGKStLinall 120
                   ++ + +eel+  l   + vl G++G+GKS +i++l+
   CCG93334.1   7 IENLALIEELEWDLVPGLNVLTGETGAGKSIVIDSLK 43 
                  5566778999999999****************99885 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.7
                  HHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  65 leelkeelealgyevllvsaktkegleelkellkd 99 
                  ++e  + leal+ e l +s+k+k+++eel + ++ 
   CCG93334.1 349 AKEELQLLEALQNEALHLSSKRKKTAEELITSIQT 383
                  45566677888888888888888888888777765 PP

>> DinI  DinI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.0   0.00016      0.29      10      56 ..     157     200 ..     155     202 .. 0.88
   2 ?   -1.9   0.0       2.4   4.3e+03      34      58 ..     503     525 ..     497     527 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
                 HHHHHHHHHH-SS-EEEEEEESS-EEEEES--HHHHHHHHHHHHHHH CS
        DinI  10 aELskRiqevfPdaevrvrkasanglsveGaskedkeriseiLQetw 56 
                 +ELs+R++ ++++++   +k  +n+ls+e +  ++k+r++e LQe++
  CCG93334.1 157 NELSHRVKTLYENHQKLLKK--KNSLSLE-ELLKKKQRLNEQLQEIV 200
                 8************9999886..5778888.88999**********86 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.4
                 EEEEES--HHHHHHHHHHHHHHHHT CS
        DinI  34 glsveGaskedkeriseiLQetwes 58 
                  ++v+ +s+e+  r   +L e++e+
  CCG93334.1 503 HFKVMKESEENVTR--VLLKEMVEE 525
                 44444333333222..245666665 PP

>> Condensin2nSMC  Condensin II non structural maintenance of chromosomes subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3     0.054        96      66     100 ..     344     387 ..     304     393 .. 0.69
   2 ?    9.0   0.2   0.00085       1.5      36     114 ..     483     566 ..     471     567 .] 0.81

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.054
  Condensin2nSMC  66 lkeei...eesciqdlmeaalhakr......kklakklrkvLsa 100
                     l ++i   e +++++l+++alh+++      ++l +++++vL++
      CCG93334.1 344 LARNIakeELQLLEALQNEALHLSSkrkktaEELITSIQTVLQS 387
                     3333333345999**********977766666666677777776 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00085
  Condensin2nSMC  36 iksqipklek.svleaygeilfraWkkasge.....lkeeieesciqdlmeaalhakrkklakklrkvLsafhskkkekeveeml 114
                     i++qi  +++   + a g++ f++ k+++++     lke +ee+ ++++  + l  +++++ + +rk+Ls    +k+ek++e++l
      CCG93334.1 483 INHQILCITHlPSMAAGGDAHFKVMKESEENvtrvlLKEMVEEDRLKEIA-RMLGGENEEAIRLARKLLSVAKGNKEEKSLEKLL 566
                     5666666666455666799999****999997777666667999998865.6788888*************************98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3    0.0003      0.55      28      84 ..      26      84 ..      21     209 .. 0.55
   2 ?    2.1   1.6      0.13   2.3e+02      71     145 ..     354     463 ..     242     490 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0003
      AAA_16 28 llsGesGvGKsslvrellralekd..........ggiflrgkcdqlesaipysalaqalareellrq 84
                +l+Ge G GKs ++++l+  l ++          +   ++g+++ +       ++++     +l+++
  CCG93334.1 26 VLTGETGAGKSIVIDSLKFLLGERasltflknkeKPGIVEGEFQLS------ETFWTRV-S-DLFKE 84
                79****************7777775555555554455555555555......2233333.2.33333 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.13
      AAA_16  71 alaqalareellrqlldeaesaeleawrekleeala............................................................... 106
                 +l++al                             +                                                               
  CCG93334.1 354 QLLEAL-----------------------------Qnealhlsskrkktaeelitsiqtvlqslgfaqsgfsisfdnkekvgpsgqdeieflfspnpgi 423
                 122222.............................1222211111111112222233333335556666666666666666666666666666666666 PP

      AAA_16 107 ...avpelagaea.srllellkrllallsrderplvlvlDdlq 145
                    + +e+a++++  r+  +lk+ +a+    ++  +lv+D+++
  CCG93334.1 424 pckPLKEIASSGEaARVMLALKAVFARV---DPIPILVFDEID 463
                 4444444444433455555555555222...222566666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1600  (0.0892409); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.48
# Mc/sec: 3540.14
//
Query:       CCG93335.1  [L=337]
Description: Peptide chain release factor 2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-56  189.6   0.1    1.4e-55  188.2   0.0    1.7  2  PCRF       PCRF domain
    3.9e-41  139.6   0.1    7.7e-41  138.7   0.1    1.5  1  RF-1       RF-1 domain
  ------ inclusion threshold ------
        0.1   12.4   0.1       0.32   10.8   0.1    1.8  1  SmpA_OmlA  SmpA / OmlA family


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.2   0.0   2.3e-59   1.4e-55      12     193 .]       1     180 [.       1     180 [. 0.96
   2 ?   -1.6   0.0      0.36   2.1e+03      71     101 ..     237     265 ..     227     277 .. 0.44

  Alignments for each domain:
  == domain 1  score: 188.2 bits;  conditional E-value: 2.3e-59
                 T.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT......-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTTSEEEEEEEE- CS
        PCRF  12 lsdpevwedqekakklskelaeleeivealeeleealedleeakelle..edeelaelaeeeleelekeleeleeelkklLlpkdendeknaileiraG 108
                 ++dp +w+++ek +k  ++ +el++ ++++ ++ ++ +dle++ +ll+   d +l e+ e e++++++ l+++  e+k +L+  d+ d+knail+i+aG
  CCG93335.1   1 MTDPGFWQSSEKSEKAISKSKELKAKLSDYYTILNRFKDLEALFDLLKesGDVSLLEELEREIKNYSDLLDSV--EVKLILS--DPLDQKNAILSIHAG 95 
                 6799***************************************9*9955788999999999************..99999*9..*************** PP

                 SSTHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEESSS.SEEEEEEEEESTTHHHHHGGG-EEEEEEEE-TTSSS--EEEEEEEE CS
        PCRF 109 aGGdeaalfaedLlrmYtryaerkgwkvevldaseeeagGikevtleiegegaYgkLkfEsGvHRvqRvpetesqgrihTStatV 193
                 aGG+ea+++a++LlrmY+ryaer+g+kv+++d+ + e  Gik++++ ++g++aYg+Lk+E+GvHR++R++++++qg+++TS+a+V
  CCG93335.1  96 AGGTEACDWAAMLLRMYQRYAERHGYKVSLVDILPGEEAGIKSASILVSGNYAYGYLKAERGVHRLVRISPFNAQGKRQTSFASV 180
                 ***********************************5555********************************************99 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.36
                 GTHHHHHHHHHH..HHHHHT-..SSSTTSEE CS
        PCRF  71 eleelekeleeleeelkklLlpkdendekna 101
                 e ++l+++  +l + l++ L  + e+d+k a
  CCG93335.1 237 ERSQLQNRATAL-KILRSRLY-ELEKDKKRA 265
                 333333333333.22222222.233333332 PP

>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   0.1   1.3e-44   7.7e-41       2     116 .]     189     298 ..     188     298 .. 0.97

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 1.3e-44
                 CCCCE--GGGEEEEEE---SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-.S.-S---S--E CS
        RF-1   2 eieieidekdleidtfrssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkkekkkigtgssek 100
                 +i+iei+e+dl+id+frssG+GGQ VN+t+saVr+thlptg +vv cq+eRsq +Nr++Al++L+++l  +ele++k++++ +r+  +k +ig+g+  +
  CCG93335.1 189 TIDIEIKESDLKIDVFRSSGHGGQGVNTTDSAVRITHLPTG-LVVVCQNERSQLQNRATALKILRSRL--YELEKDKKRAEMERIYGQKGEIGWGR--Q 282
                 689**************************************.8*************************..8889999999****999*********..* PP

                 CEEEECGCTTEEEETT CS
        RF-1 101 iRtynkkpqsrvkdhr 116
                 iR+y+++p+++vkd+r
  CCG93335.1 283 IRSYVLQPYKMVKDLR 298
                 **************98 PP

>> SmpA_OmlA  SmpA / OmlA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   5.4e-05      0.32       6      26 ..     291     311 ..     288     336 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.4e-05
                 SHHHHT--TT-BHHHHHHHH- CS
   SmpA_OmlA   6 qeqvdqlkpGmtkeqVryllG 26 
                 +++v++l++G +++qV+++l 
  CCG93335.1 291 YKMVKDLRTGESRSQVEEVLD 311
                 589***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2262.03
//
Query:       CCG93336.1  [L=225]
Description: conserved exported hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.019   14.6   0.0      0.024   14.3   0.0    1.4  1  YtfJ_HI0045  Bacterial protein of unknown function (YtfJ_HI00


Domain annotation for each model (and alignments):
>> YtfJ_HI0045  Bacterial protein of unknown function (YtfJ_HI0045)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.3e-06     0.024      93     141 ..     145     193 ..      79     221 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.3e-06
  YtfJ_HI0045  93 ssledskkefpwsqlvlDekgvvkkaWdLkeessaiivldkeGkvkfvk 141
                  s ++++ +e++    vlD +g++ + + + ++  +i+++dk+G++  v+
   CCG93336.1 145 SHIKKNFNENSRPFPVLDMNGTLTHDFGVPKNATQILIYDKSGNLYQVE 193
                  556666666677778****************************985443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1571.87
//
Query:       CCG93337.1  [L=157]
Description: Molybdenum cofactor biosynthesis protein C [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-48  162.1   7.6    8.1e-48  162.0   7.6    1.0  1  MoaC      MoaC family


Domain annotation for each model (and alignments):
>> MoaC  MoaC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.0   7.6   4.5e-52   8.1e-48       1     135 [.      24     156 ..      24     157 .] 0.99

  Alignments for each domain:
  == domain 1  score: 162.0 bits;  conditional E-value: 4.5e-52
                 E---TTS--EEEEEEEEEEEEE-HHHHHHHHTTSSTTB-HHHHHHHHHHHHHHHHHHHSTT-----EEEEEEEEEEETTTTEEEEEEEEEEEESS--HH CS
        MoaC   1 mvdvsekeetkrtAvAegrvklseetlelikekklkkGdvlavariagimaaKktseliplcHplpltkveveleleeeeesveieatvktegktGvem 99 
                 mv+v++k+++kr+A+Aeg+++ls+et+ l+++k+++kGdvl+va+ia+imaaKkt elipl+H++ l+ +++++e+e  e+ +++ a+++  +ktGvem
  CCG93337.1  24 MVNVTDKAVQKRMAIAEGFITLSQETIGLLQAKAMPKGDVLTVAKIASIMAAKKTGELIPLAHTIGLSYADTHFEIE--ETGIRVVARAESVAKTGVEM 120
                 9*************************************************************************987..79****************** PP

                 HHHHHHHHHHHHHHHHHTTTHTT-EEEEEEEEEEES CS
        MoaC 100 EALtavsvaaltvyDmvKavdkemvieevrlveKsg 135
                 EAL+ vsva+lt+yDm+Kavdk+mvi ++rl+eK++
  CCG93337.1 121 EALVMVSVALLTLYDMCKAVDKSMVIGQIRLIEKKK 156
                 **********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1187.48
//
Query:       CCG93338.1  [L=167]
Description: Molybdopterin adenylyltransferase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-26   93.1   0.0    1.5e-26   92.8   0.0    1.0  1  MoCF_biosynth  Probable molybdopterin binding domain


Domain annotation for each model (and alignments):
>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.0   8.4e-31   1.5e-26       3     138 ..       6     144 ..       4     149 .. 0.89

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 8.4e-31
                    EEE-HHHHTTSSGBHHHHHHHHHHHTTSEEEEEEE..EE-SSHHHHHHHHHHHHHTS..SEEEEESS-SSSTT--HHHHHHHHHSEE-HHHHHHHH CS
  MoCF_biosynth   3 itvGdellsgkieDtngpllaellkelgvevskyt..vvpDdeeeikeallaaleea..dviittGGtGptpdDvtpealaklfekelegfeeafr 94 
                    it +d+ ++g ++D++gp + + +++l +e  +    ++pD+++ +++++l+ ++e    +++ttGGtGp+++Dvtpea++ ++ekel+gf+e++r
     CCG93338.1   6 ITLSDRAYAGIYKDQSGPEIEKVIRSLFAEPVEFIsvLIPDEKNLLVSEFLRLVDELdcPLVLTTGGTGPSSRDVTPEATRLVLEKELPGFGEIMR 101
                    89************************9997666543689***********88888876689*********************************** PP

                    HHHHHHCCTTSHGGGGGGE.EE.....TTE.EEEE-SSHHHHHHHHHHHH CS
  MoCF_biosynth  95 rvslkpgkpvgvapgailsrav.....gkt.iigLPGspkavkealeeil 138
                    + s+k       +++ailsrav     + + ii+LPG p+a++++l ++ 
     CCG93338.1 102 MESYK------KVKTAILSRAVagirkR-SlIINLPGKPSAIADCLMLLG 144
                    *****......6888899***9**9744.3599************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1283.76
//
Query:       CCG93339.1  [L=142]
Description: Phosphoribosyl-AMP cyclohydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-32  110.7   0.1      3e-32  110.2   0.1    1.2  1  PRA-CH    Phosphoribosyl-AMP cyclohydrolase


Domain annotation for each model (and alignments):
>> PRA-CH  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.1   1.7e-36     3e-32       1      74 []      38     112 ..      38     112 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 1.7e-36
                 EEEEE-HHHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS.-SSTTSBSSS-- CS
      PRA-CH   1 mlaymnkealektletgkavyySrsrkklWkKGetSgnvqkvkeirlDcDqDalllkveqkg.aaCHtgkesCFy 74 
                 ml+ymnkeale+t+etg a+yySrsrkk+W+KGe+Sg +q+vk+i +D DqD+lllkv+ +g a+CH+g++sCFy
  CCG93339.1  38 MLGYMNKEALERTIETGLATYYSRSRKKIWVKGEESGFFQHVKDIFIDDDQDTLLLKVKVDGgASCHVGYRSCFY 112
                 9**********************************************************99647**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1052.13
//
Query:       CCG93340.1  [L=367]
Description: Acyl-CoA reductase, LuxC [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-39  135.4   0.0    9.7e-39  133.6   0.0    1.7  1  LuxC      Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   5.4e-43   9.7e-39      56     405 .]      25     355 ..      10     355 .. 0.87

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 5.4e-43
        LuxC  56 reeLkkvleseLgqpeiLdeflktkeksyekaqprglvlhvlsgNvpllpvmsilqglLvknvnllkvSssdpflaaallksladvdenhtladslsvv 154
                 +e L +++e eL++  +Ld+f    +    ka +++ ++hvl++N  + ++ sil glLv+  n+++ +      + + l  ++ + +n +l++++   
  CCG93340.1  25 KEDLIHLVELELKSLTALDDFFDYGH-AKTKAIAPRQIYHVLAANLYVAGFQSILLGLLVGSFNVVQCPQ----PVREPLLRFISLLPN-KLKNQVELC 117
                 89999****************97776.678999999999***************************9974....445556678888887.9****9988 PP

        LuxC 155 yfksgdtkleeeivqnaDvvvawGgeeaikaiseklkpgkqlikfGakvSfavvdkealeeealdkaaeraAkDiivfdQqAClspqvvfvekd.dkie 252
                  f     + ++e+ +++D +v++Gg+ +i+  ++  +  k+ + +G++vS+  v+      +  ++ +++ AkDi+ f Q  Clspq +++e+    ++
  CCG93340.1 118 -F-----EFNQEAFEQSDCIVVFGGNRTIEHFKALSPCDKRFVGHGHRVSLIWVGTIE---NINREKITQSAKDISLFSQLGCLSPQSMLIEETtPSNT 207
                 .5.....6677788999**************************************999...677899************************86515799 PP

        LuxC 253 idefaeaLaaaLekrarilpkakldedeaakisskraelklkylladek.kvvsskdqkwtvllseeqeelnePlnrtvnvkavdsledvvryvtenrt 350
                 i  f eaLa++L kr        ++++e a i++ r       +l     ++   +++ wtv+ +  +   + + +rt++v  vd+  ++ + +++ ++
  CCG93340.1 208 ILSFCEALAESLSKRSSE-KSFDINIEELAVIKQLRDC---AKALGWSVwGSSLTESNPWTVIHRRSNSFEPTCGYRTIYVDSVDKT-KLKEWLKPIQG 301
                 ************998765.5678999999999999888...45555553355567899*********66666777**********99.99*******99 PP

        LuxC 351 .lQtvglavnesrleelarklalaGvsrivklGemnlaksGephDGvyaLkrlvrw 405
                  + tvg++  e+  + + r    aG+ r + +G+m++    ++hDG   +++lvrw
  CCG93340.1 302 mISTVGVF--ETIPDDIVRIFINAGATRFCSVGQMQQPSAFWHHDGRNRIEDLVRW 355
                 9*****65..5555566666799********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2568.80
//
Query:       CCG93341.1  [L=364]
Description: Acyl-protein synthetase, LuxE [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-12   45.5   0.0    2.2e-11   43.4   0.0    1.8  1  LuxE      Acyl-protein synthetase, LuxE


Domain annotation for each model (and alignments):
>> LuxE  Acyl-protein synthetase, LuxE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   1.2e-15   2.2e-11      64     372 ..      71     355 ..      42     358 .. 0.75

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 1.2e-15
        LuxE  64 vddiPviPvsvfkaigtkllsvsedeikaklqssatsGlkst.vlldklsierllrava.rvmkevlspk.drqielvdldPdrfnatnlgakivavkv 159
                  ++iP+iP ++fk   t +  + e+    +l+s +tsG++ +   ld l  +    a++ ++ +e   p     + ++   P++     l a +     
  CCG93341.1  71 WKEIPAIPQELFKK-ETIFCYTIEQAKGYYLTSGTTSGIQGRhYFLDPLIYK----AISlQGAHEAAVPIhTACLHFLTESPNENPHSSLSAMFSFWAE 164
                 5789********99.6666666667777789999999999762456666543....4441344444444303445556667777777788888888888 PP

        LuxE 160 ellyastskytvdeerpsapleflekklvellrikasekdliliG..fiyllyqtvyktlkdknisfqldknlqvitiGGWkklekekldkidfnrdla 256
                    ++s   + ++++     ++ + +kl+      + ++++ + G  f + l             s+ l+++++++++GG k   ke +dk++f ++l 
  CCG93341.1 165 SNPFPSH--FWIQNKT--LCIDPFIQKLNLDI---SAGRKVGICGtaFSFALLM------EKHPKSLSLPQGSFILETGGMKGKHKE-IDKQEFYKQLS 249
                 8889988..9999888..88998899997432...3455566666347776655......455668889*************98887.9********** PP

        LuxE 257 dvlnlsiddvvdiygfteqvelntpdfkdelkrkrvysdviirdeetlkvvgdGkvGlleyvdalstsyPafvvltddlGvieeslcegqkaGklvkvl 355
                 + ++++ d +   yg+te     ++   d+   +   ++v++ d+ t k +  G+ Gl+ ++d         +  t dl +  + +         + ++
  CCG93341.1 250 SYFGITLDCIFSEYGMTELSSQAYSKGTDGTFLVPPWAKVLVIDPRTEKECQVGQKGLVRWIDLANVDSVLCIQ-TLDLAIKTQ-E--------GFYLI 338
                 ********************99999999998887777789999********************87665544444.888887666.3........48899 PP

        LuxE 356 rrvkkaevkGcadvlse 372
                 +r ++a  +Gc+++++e
  CCG93341.1 339 GRSHHAPPRGCSLSIEE 355
                 ***********999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2381.67
//
Query:       CCG93342.1  [L=80]
Description: Membrane protein CcmA involved in cell shape determination [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-09   37.5   0.4    2.5e-09   37.3   0.4    1.1  1  Bactofilin  Polymer-forming cytoskeletal


Domain annotation for each model (and alignments):
>> Bactofilin  Polymer-forming cytoskeletal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.4   1.4e-13   2.5e-09      42      97 ..      15      71 ..       2      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.4e-13
  Bactofilin 42 kvegnika.eevvvaGtvkGnveaeekvelkktakveGdikaksleieegavfeGkl 97
                ++eg++ + ++++v+ +++G++++ +k+e+ ++a++eG+++a+ +ei++ga ++G++
  CCG93342.1 15 SLEGELWVrDKAIVNCHIQGKIRVGGKLEILSEAVIEGEVYAQAIEIDSGAIINGRI 71
                67889888677********************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 574.95
//
Query:       CCG93343.1  [L=254]
Description: Zn-finger protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-05   24.7   0.2     0.0002   21.6   0.1    2.0  2  Bactofilin       Polymer-forming cytoskeletal
    0.00037   20.1   6.0     0.0073   16.0   0.7    2.7  2  Ribosomal_S27e   Ribosomal protein S27
      0.001   18.4  12.7      0.026   13.9   3.0    3.7  3  zf-ribbon_3      zinc-ribbon domain
      0.009   15.9  10.6       0.37   10.8   0.2    4.2  4  zinc_ribbon_4    zinc-ribbon domain
  ------ inclusion threshold ------
      0.014   15.3   5.3        1.4    8.9   1.2    2.6  2  zinc-ribbons_6   zinc-ribbons
       0.02   15.2   0.8        1.2    9.5   0.2    2.7  2  zinc_ribbon_9    zinc-ribbon
      0.029   14.4   8.7       0.41   10.7   4.0    2.4  2  zinc_ribbon_6    Zinc-ribbon
      0.061   13.4  13.7       0.62   10.1   1.0    3.3  3  DZR              Double zinc ribbon
       0.12   12.2   0.5       0.12   12.2   0.5    2.0  2  Cys_rich_CPCC    Cysteine-rich CPCC
       0.14   11.7   6.3          1    8.9   0.1    3.0  2  TF_Zn_Ribbon     TFIIB zinc-binding
       0.14   11.9   0.1       0.14   11.9   0.1    3.3  3  zinc_ribbon_10   Predicted integral membrane zinc-ribbon meta
       0.21   12.0   2.7       0.55   10.6   2.7    1.7  1  DnaJ_CXXCXGXG    DnaJ central domain
       0.25   11.6   8.1          1    9.6   0.1    3.6  4  zf-RING_7        C4-type zinc ribbon domain
       0.43   10.7   7.6       0.42   10.7   5.4    2.1  2  zf-RRPl_C4       Putative ribonucleoprotein zinc-finger pf C4
       0.51   10.1   0.1       0.51   10.1   0.1    3.1  3  DNA_RNApol_7kD   DNA directed RNA polymerase, 7 kDa subunit
       0.56   10.6   8.3        1.1    9.6   0.5    3.3  3  DUF1178          Protein of unknown function (DUF1178)
       0.86    9.6   8.4        4.4    7.3   0.1    3.3  3  Cys_rich_CPXG    Cysteine-rich CPXCG
        1.4    9.3   5.4         15    6.1   0.3    2.6  2  Lar_restr_allev  Restriction alleviation protein Lar
          3    8.3   7.2         10    6.6   4.7    2.7  3  DUF3795          Protein of unknown function (DUF3795)
        3.2    7.8   8.0         36    4.4   0.2    2.9  2  HypA             Hydrogenase/urease nickel incorporation, met
        4.4    7.4   8.8        8.2    6.5   0.7    2.5  2  Zn_Tnp_IS91      Transposase zinc-binding domain


Domain annotation for each model (and alignments):
>> Bactofilin  Polymer-forming cytoskeletal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   2.3e-07    0.0002       5      89 ..      83     168 ..      79     176 .. 0.90
   2 ?    2.9   0.0      0.16   1.4e+02      35      76 ..     164     207 ..     159     220 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.3e-07
  Bactofilin   5 egtkikGelevegdlridGkveGdieakgklvvgeggkvegn.ikaeevvvaGtvkGnveaeekvelkktakveGdikaksleiee 89 
                  g+ + G     ++l ++Gk++ +i++ g++  + g++  g  ++ ++++++G ++ + +a+e+ve+ ++++v+G + a+++ +++
  CCG93343.1  83 VGCAFCGAYLYVENLCLKGKIKRKISTLGDIDFEAGSEYAGAtVQGRKIRIRGIMQCSFKATEEVEFCSQSVVKGIVVAPRVIVNR 168
                 5677778877889999*************************99************************************9999887 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
  Bactofilin  35 lvvgeggkvegn.ikaeevvvaGtvk.Gnveaeekvelkktakv 76 
                 ++v++ ++ + + + a e++v+G+++  ++ a++ +++++ + +
  CCG93343.1 164 VIVNRFASAKVKeVIAYELTVKGQLEcETIIARDFLKIESFGMI 207
                 66777666666668888888888887567777777777766555 PP

>> Ribosomal_S27e  Ribosomal protein S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.5      0.01       8.6       8      32 ..      16      39 ..      10      45 .. 0.73
   2 !   16.0   0.7   8.6e-06    0.0073       7      51 ..      64     108 ..      59     112 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.01
                    EE-TTTS-EEEEESS-SS-EEESSS CS
  Ribosomal_S27e  8 vkCpdCenetvvFshaatvvkCisC 32
                    ++Cp C++ +v  s+ a    C +C
      CCG93343.1 16 IRCPACGHSQVE-SRWALSTICKKC 39
                    89******9985.444444457777 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 8.6e-06
                     EEE-TTTS-EEEEESS-SS-EEESSSTCEE.EEECSSSEEESSCEE CS
  Ribosomal_S27e   7 dvkCpdCenetvvFshaatvvkCisCgkvL.vePtGGkaklkaqil 51 
                     ++ Cp C+n + ++ +a + v C  Cg  L ve    k+k+k +i+
      CCG93343.1  64 EITCPYCQNSQKIYAQALS-VGCAFCGAYLyVENLCLKGKIKRKIS 108
                     799***********99875.8******9986788888999998887 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   3.0     3e-05     0.026       2      22 ..      15      39 ..      14      39 .. 0.80
   2 !    7.7   0.2    0.0029       2.5      14      23 ..      62      71 ..      59      74 .. 0.79
   3 ?    1.2   0.2      0.32   2.7e+02      19      24 ..      85      90 ..      81      92 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3e-05
  zf-ribbon_3  2 tvrCPnCGa.plssdd...nvCpyC 22
                  +rCP+CG+ +++s++   ++C++C
   CCG93343.1 15 LIRCPACGHsQVESRWalsTICKKC 39
                 58*******99***98444677777 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0029
  zf-ribbon_3 14 sddnvCpyCG 23
                 ++ ++CpyC+
   CCG93343.1 62 TREITCPYCQ 71
                 6788999996 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.32
  zf-ribbon_3 19 CpyCGt 24
                 C+ CG+
   CCG93343.1 85 CAFCGA 90
                 999996 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.2   0.00043      0.37      17      34 ..       7      24 ..       5      24 .. 0.84
   2 ?    0.5   0.4       0.7     6e+02      28      33 ..      36      41 ..      34      43 .. 0.82
   3 !    7.9   0.1    0.0034       2.9      19      33 ..      58      72 ..      56      74 .. 0.88
   4 ?    4.7   0.4     0.033        28       3      11 ..      65      73 ..      64      91 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00043
  zinc_ribbon_4 17 eklpakgvkvrCskCghv 34
                   ++l  k++ +rC++Cgh+
     CCG93343.1  7 KQLDSKTQLIRCPACGHS 24
                   568889999*******95 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.7
  zinc_ribbon_4 28 CskCgh 33
                   C+kC h
     CCG93343.1 36 CKKCFH 41
                   999988 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0034
  zinc_ribbon_4 19 lpakgvkvrCskCgh 33
                   +p k+++++C+ C++
     CCG93343.1 58 VPSKTREITCPYCQN 72
                   789999*******98 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.033
  zinc_ribbon_4  3 itCpsCkak 11
                   itCp C+  
     CCG93343.1 65 ITCPYCQNS 73
                   888888853 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.2    0.0041       3.5      10      37 ..       9      41 ..       3      57 .. 0.64
   2 ?    8.9   1.2    0.0017       1.4       2      32 ..      66      98 ..      60     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0041
                    -EE-SSEEE-TTT--.....EEEEEEE-SSS-S CS
  zinc-ribbons_6 10 lekrgeqyhCeaCqe.....dlkkealCpeCeq 37
                    l+++++ ++C aC +     +    ++C +C +
      CCG93343.1  9 LDSKTQLIRCPACGHsqvesRWALSTICKKCFH 41
                    556666677777766655555666667777755 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0017
                    --SSS-S--E..E-SSEEE-TTT--EEEEEEE- CS
  zinc-ribbons_6  2 kCpeCqqele..krgeqyhCeaCqedlkkealC 32
                    +Cp Cq+  +   +  ++ C  C + l +e+lC
      CCG93343.1 66 TCPYCQNSQKiyAQALSVGCAFCGAYLYVENLC 98
                    7999998766547778999****9999999999 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.12        99      22      32 ..      16      26 ..       4      28 .. 0.71
   2 ?    9.5   0.2    0.0014       1.2      15      29 ..      58      72 ..      53      74 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.12
  zinc_ribbon_9 22 vlCPhCgggFV 32
                   + CP Cg   V
     CCG93343.1 16 IRCPACGHSQV 26
                   46****97655 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0014
  zinc_ribbon_9 15 spdedsdvlCPhCgg 29
                    p+++++++CP+C++
     CCG93343.1 58 VPSKTREITCPYCQN 72
                   47889999*****86 PP

>> zinc_ribbon_6  Zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   1.4     0.022        19      21      56 ..       7      42 ..       1      44 [. 0.76
   2 ?   10.7   4.0   0.00048      0.41      20      56 ..      53      91 ..      37      92 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.022
  zinc_ribbon_6 21 eeyknkkvkilCnDCekksevkfhvlglkCkeCgSY 56
                   +++ +k++ i C  C++++  +   l   Ck+C  Y
     CCG93343.1  7 KQLDSKTQLIRCPACGHSQVESRWALSTICKKCFHY 42
                   7888999********96555444457889***9655 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00048
  zinc_ribbon_6 20 p..eeyknkkvkilCnDCekksevkfhvlglkCkeCgSY 56
                   p  +++ +k+ +i+C  C+++++++   l + C+ Cg+Y
     CCG93343.1 53 PffPSVPSKTREITCPYCQNSQKIYAQALSVGCAFCGAY 91
                   44466667899**************************99 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.0   0.00073      0.62      21      48 ..       8      39 ..       4      40 .. 0.80
   2 ?    6.0   5.5     0.014        12       1      35 [.      36      89 ..      32      99 .. 0.52
   3 ?    1.7   0.2      0.31   2.7e+02       3      16 ..     138     151 ..     137     154 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00073
         DZR 21 klkavaaedrCpsCgek.vdpearf...CpeC 48
                +l++ ++ +rCp+Cg++ v+++++    C++C
  CCG93343.1  8 QLDSKTQLIRCPACGHSqVESRWALstiCKKC 39
                5666667899****999899999876668888 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.014
         DZR  1 CpqCgee.................lppdarfCseCgtklkavaa..edrCpsCg 35
                C++C +                   + + ++C++C+++ k +a+  +  C  Cg
  CCG93343.1 36 CKKCFHYiglatkknsvpffpsvpSKTREITCPYCQNSQKIYAQalSVGCAFCG 89
                444444444444444444444433444455666666666555555555566665 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.31
         DZR   3 qCgeelppdarfCs 16 
                 qC  + +++ +fCs
  CCG93343.1 138 QCSFKATEEVEFCS 151
                 56666666666665 PP

>> Cys_rich_CPCC  Cysteine-rich CPCC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   0.00014      0.12       2      25 ..      17      40 ..      16      51 .. 0.92
   2 ?   -2.8   1.3       6.9   5.9e+03       2       9 ..      66      73 ..      65      95 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
  Cys_rich_CPCC  2 qCpcCgyltleeeegsydiCpvCf 25
                   +Cp Cg+  +e++ +   iC+ Cf
     CCG93343.1 17 RCPACGHSQVESRWALSTICKKCF 40
                   7************99999*****9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.9
  Cys_rich_CPCC  2 qCpcCgyl 9 
                   +Cp C   
     CCG93343.1 66 TCPYCQNS 73
                   57777654 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1    0.0012         1       2      25 ..      17      39 ..      16      39 .. 0.89
   2 ?    3.3   2.2     0.069        59       2      27 ..      66      90 ..      65     106 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0012
                  EETTTTCEECHEETSTTCEEESSS CS
  TF_Zn_Ribbon  2 kCPnCgstnlveDpergelvCtdC 25
                  +CP Cg++ +ve      ++C++C
    CCG93343.1 17 RCPACGHS-QVESRWALSTICKKC 39
                  7*****98.58888999*****99 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.069
                  EETTTTCEE.CHEETSTTCEEESSSSB CS
  TF_Zn_Ribbon  2 kCPnCgstn.lveDpergelvCtdCGl 27
                  +CP+C +++ ++  +    + C +CG+
    CCG93343.1 66 TCPYCQNSQkIY--AQALSVGCAFCGA 90
                  7****9987453..3456667777765 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.43   3.7e+02      46      52 ..      17      23 ..       7      25 .. 0.81
   2 ?   11.9   0.1   0.00017      0.14      18      40 ..      27      51 ..      22      55 .. 0.74
   3 ?    1.9   2.2      0.23   1.9e+02      19      52 ..      61      90 ..      56      92 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.43
  zinc_ribbon_10 46 rCpkCga 52
                    rCp Cg+
      CCG93343.1 17 RCPACGH 23
                    7999998 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00017
  zinc_ribbon_10 18 knryal..ICskChshnGlapkeel 40
                    ++r al  IC+kC++  Gla+k+++
      CCG93343.1 27 ESRWALstICKKCFHYIGLATKKNS 51
                    55555555************87665 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.23
  zinc_ribbon_10 19 nryalICskChshnGlapkeeleevkyrCpkCga 52
                    +   + C+ C+++   +    ++ ++  C++Cga
      CCG93343.1 61 KTREITCPYCQNSQKIY----AQALSVGCAFCGA 90
                    55679999999998888....5666667888887 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.7   0.00064      0.55       1      63 [.      18      88 ..      14      90 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00064
  DnaJ_CXXCXGXG  1 CkkCkGsgakkgk..kktCktC.kGsG.vvreeqkt.lgp.fvqqsqs.tCpeCeGtGkvikekdk..CkkC 63
                   C+ C  s+ +++   ++ Ck+C +  G  +++++   + p + +++++ tCp C+ + k++++     C  C
     CCG93343.1 18 CPACGHSQVESRWalSTICKKCfHYIGlATKKNS-VpFFPsVPSKTREiTCPYCQNSQKIYAQALSvgCAFC 88
                   999999998763355778****544563333333.34555454444444**********9977642348777 PP

>> zf-RING_7  C4-type zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      11      30 ..       3      22 ..       1      22 [. 0.86
   2 ?    4.9   0.2     0.036        30      24      30 ..      65      71 ..      60      71 .. 0.81
   3 ?   -2.4   0.1       6.8   5.8e+03      26      33 .]      85      92 ..      82      92 .. 0.78
   4 ?   -0.8   0.1       2.2   1.9e+03      18      28 ..     142     152 ..     136     153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
                CCHHHHHCCSTB-EE-TTT- CS
   zf-RING_7 11 pqvlselragdevvtCpeCG 30
                p++ ++l+ + ++++Cp CG
  CCG93343.1  3 PSSSKQLDSKTQLIRCPACG 22
                66678899999********9 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.036
                EE-TTT- CS
   zf-RING_7 24 vtCpeCG 30
                +tCp+C+
  CCG93343.1 65 ITCPYCQ 71
                8*****7 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 6.8
                -TTT--EE CS
   zf-RING_7 26 CpeCGRIL 33
                C  CG+ L
  CCG93343.1 85 CAFCGAYL 92
                77899877 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 2.2
                 CCSTB-EE-TT CS
   zf-RING_7  18 ragdevvtCpe 28 
                 +a++ev +C +
  CCG93343.1 142 KATEEVEFCSQ 152
                 67799****86 PP

>> zf-RRPl_C4  Putative ribonucleoprotein zinc-finger pf C4 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   5.4   0.00049      0.42       3      89 ..      17     104 ..      15     112 .. 0.68
   2 ?    5.4   4.0     0.023        20       3      34 ..      66      98 ..      64     171 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00049
  zf-RRPl_C4   3 kCkyClskklkn.lnetvyCeaCeiyfkvknekqkvelvpikelekislrdkLCtkCkekne...kekeircetfeeylkklklCkeCker 89 
                 +C+ C +++++     +  C++C  y       +k ++vp +       r++ C +C+++++   +  ++ c     yl+  +lC + k +
  CCG93343.1  17 RCPACGHSQVESrWALSTICKKCFHYIGLA---TKKNSVPFFPSVPSKTREITCPYCQNSQKiyaQALSVGCAFCGAYLYVENLCLKGKIK 104
                 8*****999987145678999999888855...5556666664444444566677776655411155568999889999999999887754 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.023
  zf-RRPl_C4  3 kCkyCls.kklknlnetvyCeaCeiyfkvknek 34
                +C+yC++ +k+ +   +v C  C  y+ v+n  
  CCG93343.1 66 TCPYCQNsQKIYAQALSVGCAFCGAYLYVENLC 98
                8****8616788888899*********998854 PP

>> DNA_RNApol_7kD  DNA directed RNA polymerase, 7 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1    0.0006      0.51      12      25 ..      10      23 ..       5      26 .. 0.82
   2 ?   -1.0   0.3       1.8   1.5e+03      20      25 ..      36      41 ..      34      43 .. 0.75
   3 ?   -0.6   1.0       1.3   1.1e+03       3      24 ..      67      89 ..      65      93 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0006
                    --SSS----SSS-- CS
  DNA_RNApol_7kD 12 lkkgdpiRCkeCGh 25
                    ++k+  iRC  CGh
      CCG93343.1 10 DSKTQLIRCPACGH 23
                    567889*******9 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.8
                    -SSS-- CS
  DNA_RNApol_7kD 20 CkeCGh 25
                    Ck+C h
      CCG93343.1 36 CKKCFH 41
                    999955 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.3
                    -SSS--B----SSS.----SSS- CS
  DNA_RNApol_7kD  3 CgeCgaevslkkgd.piRCkeCG 24
                    C  C+++ ++ +++ ++ C  CG
      CCG93343.1 67 CPYCQNSQKIYAQAlSVGCAFCG 89
                    66666666655444357777777 PP

>> DUF1178  Protein of unknown function (DUF1178)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.5    0.0013       1.1      28      46 ..      11      29 ..       2      41 .. 0.79
   2 ?    3.2   0.2      0.13   1.1e+02      29      42 ..      61      74 ..      57      84 .. 0.80
   3 ?    1.2   0.0      0.53   4.5e+02      37      64 ..     149     176 ..     136     230 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
     DUF1178 28 karglveCpvCgsteveka 46
                ++++l++Cp Cg+++ve +
  CCG93343.1 11 SKTQLIRCPACGHSQVESR 29
                5789************976 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.13
     DUF1178 29 arglveCpvCgste 42
                +++ ++Cp+C++++
  CCG93343.1 61 KTREITCPYCQNSQ 74
                6788******9764 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.53
     DUF1178  37 vCgstevekalmaprvakskkkaaeaae 64 
                 +C ++ v+  + aprv  ++ ++a+ +e
  CCG93343.1 149 FCSQSVVKGIVVAPRVIVNRFASAKVKE 176
                 799999999******9888777666554 PP

>> Cys_rich_CPXG  Cysteine-rich CPXCG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2     0.029        25       1      10 [.      16      25 ..      16      28 .. 0.87
   2 ?    7.3   0.1    0.0051       4.4       1      13 [.      65      77 ..      65      82 .. 0.83
   3 ?    0.9   0.4      0.52   4.4e+02       2      10 ..      84      92 ..      83     100 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.029
  Cys_rich_CPXG  1 iqCPyCgeei 10
                   i CP Cg+++
     CCG93343.1 16 IRCPACGHSQ 25
                   78******86 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0051
  Cys_rich_CPXG  1 iqCPyCgeeievl 13
                   i+CPyC  ++++ 
     CCG93343.1 65 ITCPYCQNSQKIY 77
                   79*****998875 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.52
  Cys_rich_CPXG  2 qCPyCgeei 10
                    C++Cg+ +
     CCG93343.1 84 GCAFCGAYL 92
                   6*****865 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.3     0.017        15       2      17 ..      14      29 ..      13      51 .. 0.78
   2 ?    4.9   0.9     0.042        36       6      36 ..      67      90 ..      64     107 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.017
  Lar_restr_allev  2 eLkpCPfCggravler 17
                     +L  CP Cg+ +v  r
       CCG93343.1 14 QLIRCPACGHSQVESR 29
                     7899*****9988655 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.042
  Lar_restr_allev  6 CPfCggravlersqrvvaeigqcvyCadCga 36
                     CP C + +++  + + v        Ca Cga
       CCG93343.1 67 CPYCQNSQKIYAQALSVG-------CAFCGA 90
                     999999999999988876.......666676 PP

>> DUF3795  Protein of unknown function (DUF3795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.83   7.1e+02      32      52 ..       7      27 ..       2      32 .. 0.74
   2 ?    6.6   4.7     0.012        10       7      58 ..      34      85 ..      17     102 .. 0.82
   3 ?   -0.5   0.3       1.9   1.6e+03       9      72 ..      85     150 ..      80     153 .. 0.43

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.83
     DUF3795 32 eelllaleeikCeGCreeekk 52
                ++l ++++ i+C+ C +++ +
  CCG93343.1  7 KQLDSKTQLIRCPACGHSQVE 27
                566677888999999888765 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.012
     DUF3795  7 ldCeeCeayeakekeekkkkkkeafeelllaleeikCeGCreeekkalaee...C 58
                + C++C +y    +   kk+    f ++ ++++ei+C+ C++++k  ++     C
  CCG93343.1 34 TICKKCFHYIGLAT---KKNSVPFFPSVPSKTREITCPYCQNSQKIYAQALsvgC 85
                57*******99744...4445578999999***********99987665435555 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.9
     DUF3795   9 CeeCeayeakekeekkkkkkeafeelll.a.leeikCeGCreeekkalaeeCkirkCakek..glefC 72 
                 C  C ay   e+   k k+k++ ++l +    +  +  G + +++k+  +   i +C+ +   ++efC
  CCG93343.1  85 CAFCGAYLYVENLCLKGKIKRKISTLGDiDfEAGSEYAGATVQGRKIRIR--GIMQCSFKAteEVEFC 150
                 66666666655544444444333322220202223344444444444443..4555543332256666 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.042        36      83      98 ..      12      27 ..       3      29 .. 0.69
   2 ?    4.1   3.0     0.053        45      70      96 ..      33      74 ..      28      95 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.042
                HHHHHS-TTTSSS-EE CS
        HypA 83 eekalrCpkCgsadve 98
                +++ +rCp+Cg+++ve
  CCG93343.1 12 KTQLIRCPACGHSQVE 27
                333569*****99987 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.053
                EEEETTTS-EEECHHH.HH..............S-TTTSSS- CS
        HypA 70 kvrCreCgkefeleek.al..............rCpkCgsad 96
                ++ C++C + + l++k +               +Cp C++++
  CCG93343.1 33 STICKKCFHYIGLATKkNSvpffpsvpsktreiTCPYCQNSQ 74
                567888887777665422257777888888888888887764 PP

>> Zn_Tnp_IS91  Transposase zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.7    0.0097       8.2      38      64 ..      14      40 ..       5      47 .. 0.87
   2 ?    4.4   1.9     0.046        39      39      65 ..      64      90 ..      60      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0097
  Zn_Tnp_IS91 38 aryeCeeCghekivyfsCksrhCpsCq 64
                 + ++C+ Cgh+++      s  C++C 
   CCG93343.1 14 QLIRCPACGHSQVESRWALSTICKKCF 40
                 5679*********999999999**995 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.046
  Zn_Tnp_IS91 39 ryeCeeCghekivyfsCksrhCpsCqk 65
                 ++ C+ C++++++y +  s  C  C++
   CCG93343.1 64 EITCPYCQNSQKIYAQALSVGCAFCGA 90
                 678*******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 1674.44
//
Query:       CCG93344.1  [L=103]
Description: hypothetical protein MFUM_980012 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 715.70
//
Query:       CCG93345.1  [L=71]
Description: hypothetical protein MFUM_980013 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 497.14
//
Query:       CCG93346.1  [L=113]
Description: hypothetical protein MFUM_980014 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 816.64
//
Query:       CCG93347.1  [L=80]
Description: hypothetical protein MFUM_980015 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 601.16
//
Query:       CCG93348.1  [L=39]
Description: hypothetical protein MFUM_980016 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 301.34
//
Query:       CCG93349.1  [L=831]
Description: hypothetical protein MFUM_980017 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-06   26.1   0.0    2.5e-05   24.6   0.0    1.9  1  Helicase_C  Helicase conserved C-terminal domain
    3.1e-05   24.0   0.0    8.6e-05   22.6   0.0    1.8  1  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.8e-09   2.5e-05      12     111 .]     271     380 ..     257     380 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.8e-09
                 HTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHH......HHHHHHH......TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C  12 leeeggkilifvntidrlek.vklllekkgikvavlhgelpqnere......eileqfn......kgesdvLiatdvaerGidipkvnlVinfdlprnv 97 
                 ++  g++i++f+++ +++ k +kl++++++ +v  l+ge+   er+         ++f        g+s +L+at+++e G d+   + V +       
  CCG93349.1 271 KKYPGSRIVVFAKSPEDAAKaAKLIRKESKCEVSLLTGEIRGWERDrmtdsdTNYRRFTrpdrheIGSSAYLVATSAGEVGADLYADHGVCDATTA--- 366
                 567899**********8888799998888**********9999999666666445555444343347799**************988888877655... PP

                 HHHHHHHTTSSSTT CS
  Helicase_C  98 tsyiqriGRtgRag 111
                 +s+ qr GR+gR g
  CCG93349.1 367 ESMLQRFGRIGRSG 380
                 789*********75 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   9.6e-09   8.6e-05      28     168 ..      35     219 ..      14     222 .. 0.64

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 9.6e-09
                 E..EEESTTSTHHHHHHHHHHHH-S........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--......................... CS
      ResIII  28 l..ikmaTGtGKTlvaaklierllkkgkee...kflflvprkslleqtleefkkflseaykeigkkvsgdkkka........................k 97 
                 l  i+++TGtGKT ++     +l+++   +   + + +v+r+ +++q+ ++ ++++++ +k + ++v+ +  +                          
  CCG93349.1  35 LrrIVLPTGTGKTSLIPCYLLALANSPI-RlprRLVWIVNRRVVVDQASDDARCLTEKLDKPELEEVRRQLVMLsggrwpkqpvavstlrgqladnreW 132
                 44499**********9777777777644.3477*********************999998884444333333332222333333334444433333443 PP

                 ......-SEEEEEHHHHHHTH...............HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---............SEEEEEESS CS
      ResIII  98 ekdstnkkilvttiqsldadseee.......eeeseellrdrfdviiiDEaHrlgakkswreilekfke............avllglTAT 168
                   d +   i+v t+++l +++  +       +++++  l ++  +i+ DEaH   a     ++l+ ++             + +++++AT
  CCG93349.1 133 YLDPSRPAIIVGTVDMLGSRLIFRgygcgpwRRAHHAGLLGFDSLIVLDEAHLEPAF---DALLDTIETlrteseicglapSHWIRMSAT 219
                 3455566788888888888886669*****77777777777777********87774...333333322222333344444888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (831 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.55
# Mc/sec: 4549.13
//
Query:       CCG93350.1  [L=259]
Description: hypothetical protein MFUM_980018 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 1687.10
//
Query:       CCG93351.1  [L=255]
Description: hypothetical protein MFUM_980019 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-24   85.0   0.0    7.3e-24   84.6   0.0    1.1  1  Cas_GSU0053  CRISPR-associated protein GSU0053 (Cas_GSU0053)


Domain annotation for each model (and alignments):
>> Cas_GSU0053  CRISPR-associated protein GSU0053 (Cas_GSU0053)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0   4.1e-28   7.3e-24       2     169 ..      27     184 ..      26     185 .. 0.91

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 4.1e-28
  Cas_GSU0053   2 lieaeLePvgGegdriqPptyadlgaa....tyaleerlgpesvrvvlvdsvqSqANRlEealldaaadegelklPlievklaekklvssleapHRia 95 
                  ++e++LeP+gG    + Ppt+  l+++     y ++e    + ++v+++d  +S  NR E ++l+++ ++    +P+i++ + ++k+ s le pHR+a
   CCG93351.1  27 VVEEQLEPAGGWRFPVKPPTFGALDEEettpPYCIDELP--DGHNVCILDTPASANNRREPIFLREEFKDL---VPKIQIII-NEKKKSLLELPHRAA 118
                  7899*******9999******999998877778888776..679**********************95544...6******9.88899********** PP

  Cas_GSU0053  96 daylrdsqldgkafr.ksevgealkeavslrkatalfkldptsLvfGvwdskekgglqakleralsseIvaydvr 169
                  d ++ +s       + +s+++eal +   + +a +l++++pt+LvfG+wds+  ++ ++k++ +l s   aydv+
   CCG93351.1 119 DVMIKCS-------KgHSKIAEALSKY-LNGNAWPLAEIAPTTLVFGAWDSR-GENSNLKISGVLRSCTLAYDVK 184
                  *******.......44678999***99.99*********************9.8899****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1817.92
//
Query:       CCG93352.1  [L=133]
Description: hypothetical protein MFUM_980020 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       820  (0.045736); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1018.80
//
Query:       CCG93353.1  [L=452]
Description: hypothetical protein MFUM_980021 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-17   61.7   0.1    4.2e-14   52.1   0.1    3.0  1  Cas_GSU0054  CRISPR-associated protein, GSU0054 family (Cas_G
  ------ inclusion threshold ------
      0.021   15.4   0.3       0.16   12.7   0.1    2.3  2  HEAT_PBS     PBS lyase HEAT-like repeat


Domain annotation for each model (and alignments):
>> Cas_GSU0054  CRISPR-associated protein, GSU0054 family (Cas_GSU0054)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.1   4.7e-18   4.2e-14      23     532 ..      28     446 ..      16     448 .. 0.75

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 4.7e-18
  Cas_GSU0054  23 eWPPsPlrvfqalvaasaringgal..ssddsevlkyleaqpaPalvafeeilsaspyrlsvPraaldivarafrrGketnsGdanparhrtmksirP 118
                  eWPPsP + f alva   r +   l    ++  ++++le       + + eil   pyr+  P         +++  ++ + G+ +  ++       P
   CCG93353.1  28 EWPPSPAKFFCALVAGN-RTGCRKLewGEEEKAAIRWLER------LDPPEILV-PPYRIGTPYI-------QYGVNNDEKQGKVEKWKY-------P 103
                  9*************975.555555522578999*******......88889999.9*****9963.......578889999999954444.......4 PP

  Cas_GSU0054 119 vvlidsssvsylWrvsevvekeiadlvkivvelaqiirvlslvidrvvgadavkteeqmeslfgerWlPdketGvdrlrvPvnGrladliarfegfls 216
                   + i ++ +++lWr     e+e   + +i+ ++++ i +l+ + d v  ++ ++  e+    +g+ + P     ++r++vP+ G    l  r+     
   CCG93353.1 104 -HRI-QEPLHFLWR-FPSGEEE---MARIICRMSRRIIALGHGSDSVWVSGKIL--EDDARPPGDAYKPAMR--GERIKVPFPGYYDLLERRWR---- 187
                  .444.4679*****.3444555...5689*************************..666678999****999..99*********999999998.... PP

  Cas_GSU0054 217 rlavGifsPaaPlavydkikyrraidrppraiaafsllktdasGeravdrarraldvagttrdklrravisagakesrlnglvlGhgesiGdekhlpt 314
                      Gi    +  +  + + y  ++ + p       ll + +sG         a  +a   r+++  a  ++  + + ++ +v+Gh e i +      
   CCG93353.1 188 ---NGISNVRSSPSEERYVLYSWSNPK-PWKWRV-FLLTSPTSGTILSFPWSSASIIAAWVRHAAGEAL-GKLRDPAWIKRVVMGHCE-ISEI----- 273
                  ...455444433344455556666666.444444.47888899988777777888899999***99886.55488899********44.5555..... PP

  Cas_GSU0054 315 gprrvaylavPdleakga.GkilvlGsvrrvivsaldGvvGdeidwarrllsvrnlekvkkdedddkehvalksllsgsdkvirsklrasksfatvtP 411
                    +r ay+++P++  k   G i  +  + +    + +    d +     +l +  l +   +            +l    k    +   sk + tvtP
   CCG93353.1 274 -RHRWAYVPLPSVHPKHGdGLIRHVAVLVP----DNE--NTDIV----DVLDGCCLTNTGGEMMA---------VLEAEHKLSPMYGGKSKVWRTVTP 351
                  .579**********9977576665554433....222..22311....23334444333222222.........22223344445556799******* PP

  Cas_GSU0054 412 vvldryddpahyrkklshvtnsdeqkrllwhlheridsllrkalvkaqlPeilaksaliesrkvGyirgadladkygvrdnlkklpryhvkivWrndc 509
                  vv++++     ++++ +                 r +++l+  l +a++ e    ++    r+  +++g++la++  ++++l  lpr+h+ +v     
   CCG93353.1 352 VVFPGH-----WQRRGR-------------NREGRLHTMLAAMLSEAGIEENSVEQCQ--VRREPFFKGCELAQQAKAPQHLLALPRMHLELVL---- 425
                  **9874.....577776.............23467889999999*********99996..57889****************************9.... PP

  Cas_GSU0054 510 qmsvridGPiiiGadrfyGlGlf 532
                       ++GP+++G +rf GlG +
   CCG93353.1 426 --KEEVQGPMLLGLGRFAGLGCL 446
                  ..67789*************976 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.41   3.7e+03       4      15 ..      59      70 ..      58      73 .. 0.76
   2 ?   12.7   0.1   1.8e-05      0.16       1      18 [.     243     260 ..     243     263 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.41
                HHHHHHHHCTSG CS
    HEAT_PBS  4 aAakaLgqlgde 15
                aA+++L +l  +
  CCG93353.1 59 AAIRWLERLDPP 70
                899999988655 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHHHCTSGGGH CS
    HEAT_PBS   1 vRraAakaLgqlgdeeai 18 
                 vR+aA +aLg+l+d++ i
  CCG93353.1 243 VRHAAGEALGKLRDPAWI 260
                 9*************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3216.41
//
Query:       CCG93354.1  [L=49]
Description: hypothetical protein MFUM_980022 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       175  (0.00976072); expected 358.6 (0.02)
Passed bias filter:                      130  (0.00725082); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 358.18
//
Query:       CCG93355.1  [L=122]
Description: hypothetical protein MFUM_980023 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 944.95
//
Query:       CCG93356.1  [L=60]
Description: hypothetical protein MFUM_990001 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0048   17.0   0.0     0.0049   17.0   0.0    1.0  1  Y1_Tnp    Transposase IS200 like


Domain annotation for each model (and alignments):
>> Y1_Tnp  Transposase IS200 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.8e-07    0.0049       8      48 ..       1      41 [.       1      53 [. 0.95

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.8e-07
      Y1_Tnp  8 ivlvtkyRrkvltgeveerlkeiikeiaekkevkilelelm 48
                +v+v++yR  ++ +e+ e+l+++++ +++++e ++le++++
  CCG93356.1  1 MVFVPQYRCGMFPKEILEELRKFMNFVSQDFESEWLECDGE 41
                59***********************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.56
# Mc/sec: 320.94
//
Query:       CCG93357.1  [L=297]
Description: Uncharacterized iron-regulated protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-49  166.7   0.0    8.8e-49  166.4   0.0    1.1  1  Cofac_haem_bdg  Haem-binding uptake, Tiki superfamily, ChaN
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.027   14.5   0.0    1.6  2  AAA_5           AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> Cofac_haem_bdg  Haem-binding uptake, Tiki superfamily, ChaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   0.0   9.8e-53   8.8e-49       1     212 [.      40     243 ..      40     244 .. 0.93

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 9.8e-53
                     HHHHHTT-SEEEEEE-TT-HHHHHHHHHHHHHH.HTT--EEEEEEEEEGGGHHHHHHHHHT.HHH......TT--TTS-..GGGTHHHHHHHHTS CS
  Cofac_haem_bdg   1 llkelaqadvvllGEkHdnpdhhalqlellkaLaaagarlalglEmferdqqpaLdrylagkideeellealewekrWgydwalYrpllefarea 95 
                     ll++l++a++++lGE+H+   hh++q ellk L++++  lal+lE +e+++q+++d++++g+++++++ ea++w+k+W+ ++ +Y+pl+ fa+++
      CCG93357.1  40 LLEDLSKARIIYLGEVHTLHSHHKAQFELLKLLYNRHIPLALALESLEAKDQKIIDQFINGQLSFKQFSEAIQWKKKWP-NYLDYKPLCLFAQKH 133
                     6899*****************************855668****************************************.8899*********** PP

                     S--EEEEE--HHHHHHHHTT......------SSSS........-HHHHHHHHHHHHHHHT-TTTHHHHHHHHHHHHHHHHHHHHHHHH-SS.E. CS
  Cofac_haem_bdg  96 glplvalnlprelvrkvareGleslseeeereraslpaeseileseeyraaleevlaehhcgeakeealerfveaQvlwDetMAesiaaalkarn 190
                     ++pl+++++p ++v++var+G +s+++ +e++++ l+     + ++ yr++l+  l+ h    ++++++   +eaQ+l+++ MA++i+++l+++ 
      CCG93357.1 134 HIPLIGIDTPHSIVSNVARKGYNSITK-KEKAEFPLA-----TITPLYRRFLTPYLSVHAF--MDKKRIALAIEAQRLRESSMAKHILSFLNSPL 220
                     *************************99.666665554.....3589**********99998..89************************999766 PP

                     .....EEEEEEHHHH-TTTSHHH CS
  Cofac_haem_bdg 191 p.gklvvviaGsgHveyglGipa 212
                       ++++ v++G+ Hv+yglGip+
      CCG93357.1 221 GsQRTICVVTGEIHVRYGLGIPQ 243
                     6577*****************96 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     3e-06     0.027      51     108 ..      32      91 ..      23     108 .. 0.81
   2 ?   -3.3   0.0       0.9   8.1e+03     108     134 ..     245     274 ..     230     275 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3e-06
                 ......--------G-SEEEEESGGG--..HHHHHHHHHHHHSSEEE..-SSSEEE---. CS
       AAA_5  51 ttslvdsplvraaregeilvlDEverae..sevlnsLlslleerrllleeggelvkaknd 108
                 ++  ++++l +   +++i++l+Ev++++   +++ +Ll+ll++r+++l+   e   ak +
  CCG93357.1  32 GAIVSQKELLEDLSKARIIYLGEVHTLHshHKAQFELLKLLYNRHIPLALALESLEAKDQ 91 
                 55667888999999************996678999***********99877777766654 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.9
                 .......-EEEEEESS--...-TT-TTHHH CS
       AAA_5 108 dd.llerfrviatanpld..rslnelspal 134
                 ++ +++r+ ++++ +pl+  ++++++s++l
  CCG93357.1 245 TQpFAQRILLFGSKEPLHlsKREKQISKQL 274
                 344677778888888888777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 1935.21
//
Query:       CCG93358.1  [L=229]
Description: Phosphatase/phosphohexomutase HAD superfamily [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-36  126.3   0.0    1.6e-36  126.0   0.0    1.1  1  HAD_2           Haloacid dehalogenase-like hydrolase
    3.9e-16   60.0   0.0    1.9e-15   57.7   0.0    1.9  1  Hydrolase       haloacid dehalogenase-like hydrolase
    5.9e-05   23.5   0.0    8.7e-05   23.0   0.0    1.3  1  HAD             haloacid dehalogenase-like hydrolase
    0.00021   21.3   0.0    0.00042   20.3   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like
     0.0058   16.2   0.3     0.0082   15.7   0.3    1.2  1  UMPH-1          Pyrimidine 5'-nucleotidase (UMPH-1)
     0.0075   16.2   0.1      0.031   14.2   0.0    2.1  2  DUF3783         Domain of unknown function (DUF3783)
     0.0091   16.1   0.1          1    9.5   0.0    3.0  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
        0.1   12.5   0.1       0.17   11.7   0.1    1.4  1  Hypoth_Ymh      Protein of unknown function (Hypoth_ymh)


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0   7.4e-40   1.6e-36       2     177 ..      13     191 ..      12     192 .. 0.93

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 7.4e-40
       HAD_2   2 iFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee....kieellrkyneekkkkevkpydgvkelLeeLkeagy 96 
                 +FD Dg+++d+++ + q+++ l++e+  +e++++ ++k +g++++++++++   +++ e    + ++  + y++  +++ ++++dg+ke+L+ Lk++ +
  CCG93358.1  13 LFDWDGVIVDSVKQHEQSWRMLAAEQ-HKEVEQDFMNKTFGMKNEKIISEFLGWTQNPEeimqLSKRKEELYKKIVQEEGLCLIDGLKEFLDCLKQKHI 110
                 8**********************999.55**********************9988877756654455555666666669******************** PP

       HAD_2  97 klgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvia 177
                  ++i +s ++ ++   le+lgi++yF+viv++edv + KP+p++++ + +kl+  ++ +++++D p ++e+akkag+kvia
  CCG93358.1 111 PMAICSSTTKTNIFFVLEKLGIKEYFSVIVGAEDVREGKPHPAPYLVTAKKLGYVPSCCVVFEDAPAGVESAKKAGMKVIA 191
                 *******************************************************************************98 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   8.6e-19   1.9e-15       4     210 .]      12     186 ..      11     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 8.6e-19
                 EEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   4 vvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtval 102
                  +fD dG+++++ +++e+ ++ +                     aa ++ + + ++f   +   ++ + +++ + +      lg +   ++    +   
  CCG93358.1  12 ALFDWDGVIVDSVKQHEQSWRML---------------------AAEQHKEVE-QDFMN-K---TFGMKNEKIISEF-----LGWTQNPEEIMQLSKRK 79 
                 68*********************.....................444444444.44444.1...5555555555555.....22222223322333333 PP

                 HTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 103 lqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgv 200
                 +  +++  +  ++ l + ++++e++  Lk++ i+++++++  +++   ++++lG ++yf+++++++++  +kp+p  ++ ++++L+  p+ +++++D +
  CCG93358.1  80 E--ELYKKIVQEEGLCLIDGLKEFLDCLKQKHIPMAICSSTTKTNIFFVLEKLGiKEYFSVIVGAEDVREGKPHPAPYLVTAKKLGYVPSCCVVFEDAP 176
                 3..6666777778888*********************************************************************999*********** PP

                 HHHHHHHHTT CS
                 xxxxxxxxxx RF
   Hydrolase 201 nDaaalaaAg 210
                  +++ +++Ag
  CCG93358.1 177 AGVESAKKAG 186
                 ********98 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.9e-08   8.7e-05       1     127 [.      12     135 ..      12     168 .. 0.61

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 3.9e-08
         HAD   1 alfDfDgTLldgdsle.lllrfllrrgaprlwralreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpk.......lldpga 90 
                 alfD+Dg ++d+   +   +r +       l+++ + + +++++++ + ++++++   ++++l+    +e + +l +  +e +++        l+  g+
  CCG93358.1  12 ALFDWDGVIVDSVKQHeQSWR-M-------LAAEQHKEVEQDFMNKTFGMKNEKI---ISEFLGWTQnPEEIMQLSKRKEELYKKIvqeeglcLI-DGL 98 
                 79**********444434444.2.......2444444455555555555522222...2222222223333333333333333333333354345.8** PP

         HAD  91 lellaahraaGdrvvvvSgglrplvepllaelgadev 127
                 +e+l++ ++++++ +++S++ + ++  +l++lg++e 
  CCG93358.1  99 KEFLDCLKQKHIPMAICSSTTKTNIFFVLEKLGIKEY 135
                 *********************************3332 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.9e-07   0.00042       3      50 ..     148     194 ..     147     213 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.9e-07
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESS CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVlt 50 
                     gKP+p  y   +++lg  p+ +++  D   + +++A++aG+k ++ +t
      CCG93358.1 148 GKPHPAPYLVTAKKLGYVPSCCVVFEDA-PAGVESAKKAGMKVIALTT 194
                     9***************************.99************99887 PP

>> UMPH-1  Pyrimidine 5'-nucleotidase (UMPH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.3   3.6e-06    0.0082      59     126 ..      62     129 ..      18     140 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.6e-06
      UMPH-1  59 mveWwskshaLlieqklkkeeiaevvkeskialrdgveelfekleklnvPvlifsaGlgdvleevlrq 126
                    W ++ ++++   k k+e  +++v+e    l dg +e+++ l+++++P+ i s+   + +  vl +
  CCG93358.1  62 FLGWTQNPEEIMQLSKRKEELYKKIVQEEGLCLIDGLKEFLDCLKQKHIPMAICSSTTKTNIFFVLEK 129
                 3456666666666666666666899*****************************99888777777765 PP

>> DUF3783  Domain of unknown function (DUF3783)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.4e-05     0.031      13      45 ..      98     130 ..      95     131 .. 0.90
   2 ?   -3.2   0.1         4   8.9e+03      20      30 ..     182     192 ..     179     199 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
     DUF3783  13 ldklldalkkaglpiplkAvlTptNinWtlkeL 45 
                 l+++ld lk++ +p ++  ++T+tNi   l++L
  CCG93358.1  98 LKEFLDCLKQKHIPMAICSSTTKTNIFFVLEKL 130
                 789**********************98776665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4
     DUF3783  20 lkkaglpiplk 30 
                  kkag+++++ 
  CCG93358.1 182 AKKAGMKVIAL 192
                 57888774433 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00045         1       2      42 ..      13     121 ..      12     146 .. 0.72
   2 ?    0.8   0.0      0.24   5.4e+02      16      42 ..     172     198 ..     169     218 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00045
                  EEESTTTSE....................................................................ETTEE-TTHHHHHHHHHHTT- CS
  Hydrolase_6   2 lfDidGvLw....................................................................rgdkaipgaaealnalraagk 31 
                  lfD dGv++                                                                    +g  +i+g +e+l+ l+++++
   CCG93358.1  13 LFDWDGVIVdsvkqheqswrmlaaeqhkeveqdfmnktfgmknekiiseflgwtqnpeeimqlskrkeelykkivqeEGLCLIDGLKEFLDCLKQKHI 110
                  68888888877777777777777777777777777777777777777777777777777777777777777777766677789999999999999999 PP

                  EEEEEE---SS CS
  Hydrolase_6  32 pvvllTNnssk 42 
                  p+++++  ++ 
   CCG93358.1 111 PMAICSSTTKT 121
                  99999875543 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.24
                  -TTHHHHHHHHHHTT-EEEEEE---SS CS
  Hydrolase_6  16 ipgaaealnalraagkpvvllTNnssk 42 
                  ++ a+  ++  ++ag++v+ lT    k
   CCG93358.1 172 FEDAPAGVESAKKAGMKVIALTTTRPK 198
                  678889999999******999966544 PP

>> Hypoth_Ymh  Protein of unknown function (Hypoth_ymh)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   7.8e-05      0.17      19      60 ..      15      58 ..       6      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.8e-05
  Hypoth_Ymh 19 nyreAvseAikaledrvreksgltkd..gkeLmqeafsakkpll 60
                +++ ++ +++k+ e+ +r +  ++++  ++++m+++f+ k++++
  CCG93358.1 15 DWDGVIVDSVKQHEQSWRMLAAEQHKevEQDFMNKTFGMKNEKI 58
                68889999*************9998679************9553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1656.09
//
Query:       CCG93359.1  [L=385]
Description: putative Predicted aspartyl protease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-15   57.1   0.1    1.2e-14   54.7   0.0    2.2  2  Asp_protease_2   Aspartyl protease
      6e-14   52.4   0.0    1.8e-13   50.9   0.0    1.8  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease
     0.0069   16.7   0.0       0.02   15.2   0.0    2.0  1  RVP              Retroviral aspartyl protease
     0.0078   16.0   0.0      0.021   14.6   0.0    1.8  1  Asp_protease     Aspartyl protease
  ------ inclusion threshold ------
      0.023   14.8   0.2      0.057   13.6   0.2    1.7  1  TPR_2            Tetratricopeptide repeat
      0.028   14.2   0.1       0.12   12.2   0.1    2.0  1  RVP_2            Retroviral aspartyl protease


Domain annotation for each model (and alignments):
>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   4.1e-18   1.2e-14       1      89 [.     138     232 ..     138     233 .. 0.89
   2 ?   -1.0   0.0      0.94   2.8e+03       6      19 ..     288     301 ..     283     303 .. 0.74

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 4.1e-18
  Asp_protease_2   1 vpvtinGkpvrfllDTGasttlispelaeklglkvreseltvrvsgagge.vkarlvrldslklggltlknvpalvld........lgeeidglL 86 
                     vp++i+G+ + fl+DTGast+++++++ae+lglk r+ +    + +++ge  +++l +l+ l++g+l +knvp++ ++         +++ +g+L
      CCG93359.1 138 VPIEIDGHFFAFLIDTGASTSIVDKQVAEALGLKERGAS---ELVLSNGErIQGALSTLPILRIGSLAIKNVPVILIEklkplsfdAKNCFHGVL 229
                     799**********************************74...56666777599***********************9988877776677889*** PP

  Asp_protease_2  87 Gmd 89 
                     G+d
      CCG93359.1 230 GTD 232
                     *98 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.94
  Asp_protease_2   6 nGkpvrfllDTGas 19 
                       k++ f+ DTG++
      CCG93359.1 288 QSKEIFFIYDTGSG 301
                     557888******96 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0     6e-17   1.8e-13       1      92 []     138     236 ..     138     236 .. 0.86
   2 ?   -2.3   0.0       2.2   6.7e+03       2      18 ..     284     300 ..     283     302 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 6e-17
                      EEEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTST.T-EEEEEEEEEE.EETTEEEEEEEEEESS.SSE......... CS
  gag-asp_proteas   1 vkvkingkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangev.eakrvrldsvkiggielrnvsavvlegel.ddl......... 83 
                      v+++i+g+ + fl+DTGAs++i+ +++ae+lgl+ +     +e+   nge  +++  +l+ ++ig++ ++nv+++ +e+ +   +         
       CCG93359.1 138 VPIEIDGHFFAFLIDTGASTSIVDKQVAEALGLKERG---ASELVLSNGERiQGALSTLPILRIGSLAIKNVPVILIEKLKpL-Sfdakncfhg 227
                      689*********************************8...577777777544***********************99876422.2355667888 PP

                      EEEHHHHHH CS
  gag-asp_proteas  84 LLGldfLkr 92 
                      +LG+d L+r
       CCG93359.1 228 VLGTDLLSR 236
                      ******997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.2
                      EEEETTEEEEEEEETT- CS
  gag-asp_proteas   2 kvkingkpvkflvDTGA 18 
                      k++++ k++ f+ DTG 
       CCG93359.1 284 KGSMQSKEIFFIYDTGS 300
                      5667778999*****96 PP

>> RVP  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.7e-06      0.02       4      32 ..     135     163 ..     132     242 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.7e-06
                 SSEEEEEETTEEEEEEE-TTBSSEEEES- CS
         RVP   4 rPllkvkiggkyieallDtGAdatvisee 32 
                  P++ + i g+ + +l+DtGA  +++ ++
  CCG93359.1 135 YPVVPIEIDGHFFAFLIDTGASTSIVDKQ 163
                 699*********************99875 PP

>> Asp_protease  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   7.1e-06     0.021      26      60 ..     137     171 ..     120     242 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.1e-06
  Asp_protease  26 yinvevngvkvkafvdsGaqksilskkcaercglm 60 
                    +++e++g+    ++d+Ga +si++k++ae  gl+
    CCG93359.1 137 VVPIEIDGHFFAFLIDTGASTSIVDKQVAEALGLK 171
                   4899**************************99885 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   1.9e-05     0.057       2      34 .]      42      74 ..      41      74 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.9e-05
       TPR_2  2 ealynlGlayyklgdyeeAleafekAleldPnn 34
                +a+ ++G +++++++  eA+++f+ + +l P++
  CCG93359.1 42 KAYKARGFLALYRNRNSEARKFFQMCYSLSPED 74
                6899**************************986 PP

>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.9e-05      0.12      32     133 ..     146     253 ..     137     256 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.9e-05
       RVP_2  32 patvLfdsGasHsFiskafvsklklkveaLstpllietP..vgssvtakeicksveieiqgiefl..adl..ilLdlkd.lDviLgmdWLsknkanidc 123
                     L+d+Gas s + k++++ l+lk    s +l+++    +++ +++  i +  ++ i++ +++    l  +  d k+ +  +Lg d Ls+++  id 
  CCG93359.1 146 FFAFLIDTGASTSIVDKQVAEALGLKERGAS-ELVLSNGerIQGALSTLPILRIGSLAIKNVPVIliEKLkpLSFDAKNcFHGVLGTDLLSRFNILIDY 243
                 56789********************976655.555544312566667777777777777777653113341134455544778**************** PP

       RVP_2 124 aekkvtltke 133
                   kk++++k+
  CCG93359.1 244 QTKKIVISKK 253
                 ******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2850.52
//
Query:       CCG93360.1  [L=273]
Description: GTP cyclohydrolase folE2 [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-94  316.8   0.7    1.2e-94  316.7   0.7    1.0  1  GCHY-1    Type I GTP cyclohydrolase folE2


Domain annotation for each model (and alignments):
>> GCHY-1  Type I GTP cyclohydrolase folE2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.7   0.7   6.7e-99   1.2e-94       1     259 []      16     265 ..      16     265 .. 0.98

  Alignments for each domain:
  == domain 1  score: 316.7 bits;  conditional E-value: 6.7e-99
                 .XXXXXXXXXX----SEEEEEEEEEEEEE--TTTS-EEEEEEEEEEEES-SS--GGGGGHHHHHHHHS-SSEEGGGHHHHHHHHHHHTT.-SEEEEEEE CS
      GCHY-1   1 lpDvqsekderkipldrVGvkgvklpvkvkdkekkaqtlvaevdlfvdLpaekkGihmSRlvevleeaeeeleeksleeileellekleyaeraevelk 99 
                 l D qs++d+rki+++rVGvkg+++p++v+dk+ ++q++va+v+l vdLp+++kG+hmSR+vevl+++ + ++  ++ +i++el++kl+ ae+a+v ++
  CCG93360.1  16 LADCQSQQDHRKIKIHRVGVKGLRYPIEVRDKNFESQHTVATVSLLVDLPHHFKGTHMSRFVEVLNAHGRMVHVCNVFSIVHELQKKLH-AETAHVIME 113
                 68****************************************************************999********************.********* PP

                 EEEEEEEE-TTT--EEEEEEEEEEEEEE..TTEEEEEEEEEEEEEEE-HHHHHHS....SS---EEEEEEEEEEEE......--HHHHHHHHHHHSSEE CS
      GCHY-1 100 feyfiekkapvsgkeglesyevtleaelerkeevkltvgvevpvttlCPCskeisrelleagaHnQRsvvtvkvelaeeekeveiedlielvessasse 198
                 f+yfiek+apv+g++gl +y+v++ea +  + e+++++ v+vpvttlCPCsk+is    ++gaHnQR++v+v ++++   ++++ied+ielve+sass+
  CCG93360.1 114 FPYFIEKNAPVTGSKGLVDYQVRFEAAAYLD-ETDFVMWVTVPVTTLCPCSKAIS----DRGAHNQRGYVSVAIRFV---QTIWIEDIIELVEASASSP 204
                 ***************************9663.6**********************....****************76...78***************** PP

                 --S---HHHHHHHHHHHHTS---HHHHHHHHHHHHHS-TTEEEEEEEEEEE-TTTSSEEEE CS
      GCHY-1 199 vyellKReDEkavtekayenpkFvEDvvRevaaaleeeerveefsveveneESiHnHnavA 259
                 +y+llKR+DEk+vte a++np FvED+vR+va +l++++++ +++ve+en+ESiHnH a+A
  CCG93360.1 205 IYSLLKRPDEKYVTELAFDNPVFVEDLVRNVALRLNANQDILWYRVEAENMESIHNHAAYA 265
                 ************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1900.66
//
Query:       CCG93361.1  [L=640]
Description: hydroxymethylpyrimidine moiety synthesis in thiamin biosynthesis [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.5e-196  652.4   0.0     3e-196  652.2   0.0    1.0  1  ThiC_Rad_SAM     Radical SAM ThiC family
    1.6e-22   79.1   0.0      3e-22   78.2   0.0    1.5  1  ThiC-associated  ThiC-associated domain


Domain annotation for each model (and alignments):
>> ThiC_Rad_SAM  Radical SAM ThiC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  652.2   0.0  3.4e-200    3e-196       1     417 [.     153     604 ..     153     605 .. 0.99

  Alignments for each domain:
  == domain 1  score: 652.2 bits;  conditional E-value: 3.4e-200
  ThiC_Rad_SAM   1 tqleaarkgiiteemeevaeken...............................vepefvreevaeGrivipanknhkek.pvaiGkglrtkvnani 65 
                   tql++a+kgiit+eme+va +en                               ++pefvr+eva+Gr++ip+n+nh+e  p++iG+++r+k+nani
    CCG93361.1 153 TQLHYAKKGIITPEMEFVAIRENlgrkgsslrqgkgplysqhsglawgaslpeeITPEFVRKEVASGRAIIPSNINHPELePMIIGRNFRVKINANI 249
                   89***************************************************************************7666**************** PP

  ThiC_Rad_SAM  66 GtsadasdieeEveKlkvalkagadtvmdLstggdideirekileespvpvgtvpiYqaleekekkveelteeellevieeqaedGvdfltiHagvt 162
                   G+sa +s+++eEv+Kl +a+ +gadtvmdLstg++i+eire i+++spvp+gtvpiYqale++ +  eel++e +++++ eqae+Gvd++tiHagv 
    CCG93361.1 250 GNSAISSSMDEEVAKLVWAILWGADTVMDLSTGKNIHEIRELIIRSSPVPIGTVPIYQALEKVGGIPEELSWEIYRDTLIEQAEQGVDYFTIHAGVL 346
                   ************************************************************************************************* PP

  ThiC_Rad_SAM 163 lellellkkekRltgivSrgGsllaawmlanekenplyeefdelleilkeydvtlSlgdglRpGsiaDatdeaqlaelivlgelvkrareagvqvmv 259
                   l++++ ++  +Rl+givSrgGs++a+w+la+++en+ly++fde++eil++yd+++SlgdglRpG+iaDa+d+aql+el +lgel+k+a+e++vqvm+
    CCG93361.1 347 LRYIPYTA--NRLCGIVSRGGSIMAKWCLAHHQENFLYTHFDEICEILRSYDISVSLGDGLRPGAIADANDAAQLSELFTLGELTKKAWEHDVQVMI 441
                   *******9..*************************************************************************************** PP

  ThiC_Rad_SAM 260 eGPGHvpldeieanvklqkklckeaPfyvlGplvtDiapgYDhitsaiGaalaaaaGadllCyvtpaEHlglPdeedvkeGviaakiaahaadlakg 356
                   eGPGH+p++ i++n++l+ k c eaPfy+lGpl+tDiapgYDhitsaiGaa++++ G+++lCyvtp+EHlglP+ edvk+Gvia+kiaahaadlakg
    CCG93361.1 442 EGPGHIPMQLIKENMDLELKHCFEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWFGCAMLCYVTPKEHLGLPNLEDVKTGVIAYKIAAHAADLAKG 538
                   ************************************************************************************************* PP

  ThiC_Rad_SAM 357 lkkarerdkalskaRkeldwekqfelaldpekareireeklpe....eeeaCsmCgek.Cavkive 417
                    ++a+ +d+ ls aR++++we+qf+l+ldp +ar +++e+lp+    ++++CsmCg+k C++ki+e
    CCG93361.1 539 FPGAQLQDNFLSYARFHFQWEDQFNLSLDPPTARLFHDENLPQpaakHAHFCSMCGPKfCSMKITE 604
                   *****************************************99889899********99****987 PP

>> ThiC-associated  ThiC-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   3.4e-26     3e-22       2      81 .]      28     103 ..      27     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 3.4e-26
                      -TT-EEEEEE-SSTT-EEEEEEE---GG.........G----EEEE---GGGG-TTS---TTT-S--TTHHHHHHTS-EE CS
  ThiC-associated   2 fpnsrkvyvegsrpdirVpmreiklsptvlketkekeeenepvrvYDtSGpYtdpeveidvrkGLprlReaWieergdve 81 
                      fpns+kvy++g++  ++Vp+r+ik++ + +     ++++++ ++ YDtSGpYtdp + +++ +GL +lR++Wie+rgd+e
       CCG93361.1  28 FPNSKKVYIQGENRGVNVPFRQIKVAHNGSG----EATDHSFFYAYDTSGPYTDPFAGVEIGSGLFPLRAEWIEQRGDCE 103
                      8************************999333....3357899************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4729.34
//
Query:       CCG93362.1  [L=922]
Description: 2-oxoglutarate decarboxylase, component of the 2-oxoglutarate dehydrogenase complex (E1) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-56  190.7   0.0    2.5e-56  190.2   0.0    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
    4.4e-48  163.7   0.0    7.1e-48  163.1   0.0    1.2  1  E1_dh            Dehydrogenase E1 component
    2.9e-42  143.9   0.0    4.7e-42  143.2   0.0    1.4  1  OxoGdeHyase_C    2-oxoglutarate dehydrogenase C-terminal
      5e-09   35.6   0.7    1.3e-08   34.3   0.7    1.6  1  2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus
  ------ inclusion threshold ------
       0.12   11.3   0.0        0.2   10.6   0.0    1.2  1  Peptidase_M30    Peptidase M30
       0.15   11.9   0.1       0.28   11.0   0.1    1.4  1  CdhC             CO dehydrogenase/acetyl-CoA synthase complex


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.2   0.0   8.4e-60   2.5e-56       6     177 ..     589     779 ..     584     780 .. 0.97

  Alignments for each domain:
  == domain 1  score: 190.2 bits;  conditional E-value: 8.4e-60
                   HHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT................TEGEEE--S-HHHHHHHHHHHHHHCT.TEEEEEEEEHHHH CS
  Transket_pyr   6 rkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg................egrvidsgisEqavlgfavGaalagp.llviveaqFgdFa 85 
                   + ae++a+++ll e+  v+l+g+D+++gtfs+r+++l+d +                 + +++s++sE+avlgf +G++l+ p +l+i+eaq+gdFa
    CCG93362.1 589 AFAETMAFGTLLYEGIPVRLSGQDSRRGTFSQRHAVLYDTKvskkyvplanihpnqaIFCIYNSPLSEYAVLGFDYGYSLDYPeALIIWEAQYGDFA 685
                   6699**************************************************9999999************************************ PP

                   GGGHHGGHHHHHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTT..EEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC. CS
  Transket_pyr  86 ngAqiyadqairsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipg..lkvvrPsdpaetkhllrrairredrkPvvlrlpksllrh 177
                   ngAq+++d  ++s e+k+++++++v++lp+g++++Gpeh+sa+ e+fl+++++  + v+++++pa+++h+lrr++ r ++kP++l+++ksllr+
    CCG93362.1 686 NGAQVIIDLYLVSSESKWGVTSNIVLLLPHGYEGQGPEHSSARVERFLQACAEdnIVVANCTTPANYFHILRRQVLRGFSKPLILFTHKSLLRN 779
                   ***************************************************9888*************************************96 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.1   0.0   2.4e-51   7.1e-48       9     294 ..     205     518 ..     198     524 .. 0.88

  Alignments for each domain:
  == domain 1  score: 163.1 bits;  conditional E-value: 2.4e-51
                 HHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TT.SEEEES..S--HHHHHHTT--..HHHHHHHHTT-T.....TTSSGTT-..-E..B..TT. CS
       E1_dh   9 vedaldalykrkkrigfyhlsagqealkvgiaaaleke.Dliite..YReagvllargls..leeilaeltgkv.....kgkggsrh.elmyae..kes 94 
                 +e +l+  y  +kr++++ ++ +++ +  +i+a   ++ D ++ +  +R++ +++a++l+   + i+ e+  +       g+g++r+  +  a+  ++s
  CCG93362.1 205 FEAFLHTRYVGQKRFSLEGSCTLIPMMDALIEACPAHGiDRLVVGmaHRGRLNFVANVLQqdYKVIFDEFSENYipegvLGNGDVRYhLGFEAAlkTKS 303
                 67789999*************************99999997654445***********99878899999999999999978888888655543311222 PP

                 ..BEE...E-SSTTTH..HHHHHHHHHHHH......HHTS---EEEEEEGGG.TT-HHHHHHHHHHHHTT--E...EEEEEEESEETTEEHHHH-S--- CS
       E1_dh  95 .rilg...gngivgaq..vplvaGialaak......iegkkevailliGDgA.anqGdvyealnlaalwklpv...ifvveNNkygisTeaekasaske 177
                  +i++   + ++++++  +p+v+G a+a         + kk++ +l++GD++  +qG v e+lnl+ l ++++   +++++NN++g++T ++ ++++ +
  CCG93362.1 304 gSIVTvglTPNPSHLEavNPVVEGKARAWErrlkdtEQRKKVLPLLIHGDASfMGQGVVQETLNLSRLEGYTTggtLHIIVNNQIGFTTVPQDGRSTHH 402
                 244431113455555555**********9999999777788899******************************************************* PP

                 GGG..TTTTS-EEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHHHHH CS
       E1_dh 178 ladrargvgipglrVdgnDplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeelkei 276
                  +++a   g+p+++V+++Dpla   Av  A e+++ + ++++++lv+YR +gH+e D+ps+++ +  ++++ ++++    + ++L+k+g +++ee +e+
  CCG93362.1 403 CTAVALMLGVPIFHVNSDDPLAAVFAVLLALEYRQVFGQDVVVDLVGYRKYGHNEGDEPSFTQ-PLLYKAIAQHPNISDVFLDQLIKSGEMTREEANEY 500
                 ***************************************************************.*********************************** PP

                 HHHHHHHHHHHHHHHHHS CS
       E1_dh 277 ekevrkeveeavkkaesk 294
                 +k   +e ++ ++++++ 
  CCG93362.1 501 RKIFVAELNQKMEESKEW 518
                 ***********9999875 PP

>> OxoGdeHyase_C  2-oxoglutarate dehydrogenase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.0   1.6e-45   4.7e-42       2     152 .]     784     920 ..     783     920 .. 0.95

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 1.6e-45
  OxoGdeHyase_C   2 SsleelaegtsFqrvledeeeealkepekvkrvvlcsGkvyydLlkerekkekekdvaivriEqlyPfpfeelkeelekYpnakelvWvQeEpkNq 97 
                    Ss+ e+ +g  F++vl d++ +     +  ++v+lc+GkvyydL++ r++ ++  d+ ivriEqlyP+  ++lke + +Y+  ++lvW+QeEpkN+
     CCG93362.1 784 SSIPEFVQG-AFEEVLADPQVN-----QPSSKVILCTGKVYYDLIDYRSRIGR-MDIPIVRIEQLYPLHEKKLKEIVLRYQP-QSLVWCQEEPKNM 871
                    8999*****.*********994.....45689*****************8765.9***************************.9************ PP

  OxoGdeHyase_C  98 GawsfveprletvlkekkkkkkklryvgreasaspAtGskkvhkkeqealleeaf 152
                    Gaws++ p+l+++++        + y+greasas+AtGs++ h+ eq++ll++af
     CCG93362.1 872 GAWSYMFPKLNDMFS------LPVLYAGREASASTATGSMAYHRLEQQKLLSDAF 920
                    **************7......469*****************************98 PP

>> 2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.7   4.4e-12   1.3e-08       8      40 ..      24      56 ..      23      56 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 4.4e-12
  2-oxogl_dehyd_N  8 naaYiEelYeayleDPsSVdesWrayFknledg 40
                     n a +Ee Y+++++DP+SV++ W a+F+++e g
       CCG93362.1 24 NLALLEEYYQRWKKDPASVSADWSAFFEGFEFG 56
                     67889************************9875 PP

>> Peptidase_M30  Peptidase M30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.7e-05       0.2     117     291 ..     124     303 ..     104     343 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.7e-05
  Peptidase_M30 117 esislyldsetlylGGtdGlntvl........ttlaheavhmqnfyrrgv...lmGakyaydtwleemtammmedlassdidpsynairdvrfpdy 201
                    + +  y+ds  l  GG + l+++l        +tla e++hm+ f +r+        k  y  +  e     + dl+  ++  ++   r v  + +
     CCG93362.1 124 KDLESYFDSGDLAGGGRKTLREILeilkksycSTLAVEFMHMDSFVQRKWisqRIEGKSFYAGFSKEHKKQILYDLLKAELFEAFLHTRYVGQKRF 219
                    56778999999999999999987533333333799*************751213456778999999999999999999999999999888888888 PP

  Peptidase_M30 202 lrygayncslttf.tsfgascesysvsGslGGflnrqlGlafyknlltnasstdsvavldeairaaqagatleealrrfgaaasallpvas 291
                       g   c+l+ +  ++   c+++ ++  + G+  r   l+f  n+l++      + ++de  ++  ++  l++   r+     a+l++ s
     CCG93362.1 220 SLEG--SCTLIPMmDALIEACPAHGIDRLVVGMAHRG-RLNFVANVLQQDY----KVIFDEFSENYIPEGVLGNGDVRYHLGFEAALKTKS 303
                    7755..5999877588999999999999999987775.6999999998876....778888888888888888888888888888887665 PP

>> CdhC  CO dehydrogenase/acetyl-CoA synthase complex beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   9.4e-05      0.28      96     137 ..     160     204 ..     140     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.4e-05
        CdhC  96 eGvmHlg...qRdiiwvRiskeavekGlrlkhigevlyaklkeef 137
                   +mH++   qR+ i  Ri  +++ +G++ +h  ++ly++lk+e+
  CCG93362.1 160 VEFMHMDsfvQRKWISQRIEGKSFYAGFSKEHKKQILYDLLKAEL 204
                 46899855559*******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (922 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 6041.05
//
Query:       CCG93363.1  [L=392]
Description: dihydrolipoamide succinyltransferase, component of 2-oxoglutarate dehydrogenase complex (E2) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-78  262.9   0.0      3e-78  262.5   0.0    1.2  1  2-oxoacid_dh     2-oxoacid dehydrogenases acyltransferase (ca
    3.9e-19   68.3   1.8    3.9e-19   68.3   1.8    1.9  2  Biotin_lipoyl    Biotin-requiring enzyme
    3.2e-09   36.5   0.1     0.0018   18.1   0.1    2.8  3  Biotin_lipoyl_2  Biotin-lipoyl like
     0.0074   16.2   0.1        1.1    9.2   0.1    2.7  2  RnfC_N           RnfC Barrel sandwich hybrid domain
  ------ inclusion threshold ------
      0.012   15.7   0.2        1.6    8.8   0.0    2.6  2  QRPTase_N        Quinolinate phosphoribosyl transferase, N-te
      0.022   14.5   0.2        2.8    7.7   0.0    2.5  2  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
      0.038   12.7   3.9       0.12   11.1   2.1    2.0  2  HlyD_2           HlyD family secretion protein
      0.093   12.9   0.0       0.22   11.8   0.0    1.6  1  Peptidase_M23    Peptidase family M23
      0.098   12.5   0.1      0.098   12.5   0.1    3.3  4  GCV_H            Glycine cleavage H-protein


Domain annotation for each model (and alignments):
>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.5   0.0   1.5e-81     3e-78       3     232 ..     162     389 ..     160     390 .. 0.98

  Alignments for each domain:
  == domain 1  score: 262.5 bits;  conditional E-value: 1.5e-81
                   XXXXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH-GGGG-EE.EESEEEE--SS--E CS
  2-oxoacid_dh   3 eeervplsgirkaiakrlteskqeiphftlsdevdvtallelrkelkekeakeekakltlldflikavalAlkefPelnasvdeeekeivvkkhvni 99 
                   +e+r pls+irk ia+rl e++  ++h+t+++evd++ +lelrk++ +++++++ +kl l++f+++av+ Alk+ Pe+ a+++e+e  +v++++ ++
    CCG93363.1 162 QEKRKPLSPIRKKIAQRLLEAHIGTAHLTTFNEVDMSTVLELRKNYGKRFEEKYGVKLGLMSFFVRAVVEALKKIPEVGARIEEDE--LVYPSTLDL 256
                   6899**********************************************98888***************************9999..********* PP

                   EEE--------EEEE--GGG--HHHHHHHHHHHHHHHTTT---GGGTSS-SEEEE---------------TT-SEEEEE---.B--TTSTT-HT--- CS
  2-oxoacid_dh 100 GvAvatprGLlvPviknadkkslleiakelkelaekaregklkpedleggtftisNlGmlGvtsftPiinppqvaIlgvgrikerpvvkegelvvrk 196
                   G+Avat++GL+vPvi+ a+++s+++i+k ++ela kar gk++ ed+egg fti+N G++G+  +tPi+nppq+ Ilg+++ikerpv+ +g++++r+
    CCG93363.1 257 GIAVATEKGLIVPVIRSAENLSFAQIEKTIQELAIKARGGKITLEDIEGGVFTITNGGVFGSMLSTPILNPPQSGILGMHAIKERPVAINGKVEIRP 353
                   ************************************************************************************************* PP

                   EEEEEEEEETTT--HHHHHHHHHHHHHTT-HHXXXX CS
  2-oxoacid_dh 197 vmtlslsaDHRvidGaeaarFlntlkkllenpeell 232
                   vm+l l++DHRvidG+ea++Fl  +k+++e+p+++l
    CCG93363.1 354 VMYLALTYDHRVIDGKEAVSFLVLVKEFIEQPASVL 389
                   ********************************9987 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   1.8     2e-22   3.9e-19       2      73 .]       2      73 ..       1      73 [. 0.95
   2 ?   -3.1   0.0       3.7   7.3e+03      22      31 ..     238     247 ..     228     250 .. 0.58

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 2e-22
                   EEEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  2 eiksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73
                   +ik+P++Ges+e+g + ++l+k+G+ V+ g+ l+e+e+ K ++ei a+k+G+++ ilvkeG++v+vg+ +a++
     CCG93363.1  2 DIKMPSVGESIESGlIGKWLKKEGERVQSGDALCEIETEKITTEIYAEKEGILH-ILVKEGSEVKVGQTIAQL 73
                   69*************************************************886.77888**********986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.7
                    STTCEE-TTS CS
  Biotin_lipoyl  22 kvGdkVkagq 31 
                    +vG  +++++
     CCG93363.1 238 EVGARIEEDE 247
                    4555555555 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.5e-06     0.013      10      39 ..      14      43 ..       5      53 .. 0.87
   2 !   18.1   0.1   8.8e-07    0.0018      15      34 ..      55      74 ..      52      77 .. 0.91
   3 ?   -2.9   0.0       3.2   6.3e+03       2      14 ..     119     133 ..     118     134 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.5e-06
  Biotin_lipoyl_2 10 sGrVaqlnVkdGqrVkaGdvLaelDsralq 39
                     sG++ +++ k+G rV+ Gd L e+++++  
       CCG93363.1 14 SGLIGKWLKKEGERVQSGDALCEIETEKIT 43
                     9************************99876 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 8.8e-07
  Biotin_lipoyl_2 15 qlnVkdGqrVkaGdvLaelD 34
                      ++Vk+G +Vk G+++a+l+
       CCG93363.1 55 HILVKEGSEVKVGQTIAQLE 74
                     79****************97 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.2
  Biotin_lipoyl_2   2 vvsIaapv..sGrVa 14 
                        s+ ap+  +Gr++
       CCG93363.1 119 KASVEAPLrrPGRIT 133
                      568999999999998 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.021        43      41      75 ..      17      52 ..      11      55 .. 0.84
   2 !    9.2   0.1   0.00057       1.1      44      66 ..      56      78 ..      51      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.021
      RnfC_N 41 pakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsG 75
                 +k l k+g++V+ G+ + e e+  ++++++a   G
  CCG93363.1 17 IGKWLKKEGERVQSGDALCEIETeKITTEIYAEKEG 52
                5678899*************9876889999997666 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00057
      RnfC_N 44 plvkvgdkVlkGqkiaeaegfvs 66
                +lvk+g +V+ Gq ia+ e++ s
  CCG93363.1 56 ILVKEGSEVKVGQTIAQLEELPS 78
                79***************998755 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00082       1.6      49      69 ..      19      39 ..       8      43 .. 0.88
   2 ?    4.2   0.1     0.022        44      48      68 ..      54      74 ..      40      75 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00082
                EESS-TT-EEETTEEEEEEEE CS
   QRPTase_N 49 ellvkDGervekgdvlleieG 69
                ++l+k+Gerv++gd l+eie 
  CCG93363.1 19 KWLKKEGERVQSGDALCEIET 39
                79****************985 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.022
                EEESS-TT-EEETTEEEEEEE CS
   QRPTase_N 48 vellvkDGervekgdvlleie 68
                 ++lvk+G++v+ g++++++e
  CCG93363.1 54 LHILVKEGSEVKVGQTIAQLE 74
                56899************9976 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0014       2.8      87     113 ..      21      47 ..      15      53 .. 0.89
   2 ?    4.4   0.1     0.015        29      84     103 ..      54      73 ..      48      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0014
                 S----SEE-SEEEEEEE-HHHHGGGSS CS
  PTS_EIIA_1  87 lvkegdkVkagdklvevdleaikkagy 113
                 l keg++V+ gd l+e++ e+i+ + y
  CCG93363.1  21 LKKEGERVQSGDALCEIETEKITTEIY 47 
                 679*******************98765 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.015
                 EEES----SEE-SEEEEEEE CS
  PTS_EIIA_1  84 FellvkegdkVkagdklvev 103
                  ++lvkeg++Vk g++++++
  CCG93363.1  54 LHILVKEGSEVKVGQTIAQL 73 
                 5789************9986 PP

>> HlyD_2  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.1   5.9e-05      0.12      76     158 ..      19     103 ..       3     109 .. 0.68
   2 ?    4.3   2.7     0.007        14      66     121 ..      45      99 ..      41     149 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.9e-05
      HlyD_2  76 kyfvkeGdkvkkgkkvaeiqkseadeklkek....letlnerikeienneaieni.ekdiekldreInvlekdikesiknedikkiee 158
                 k ++keG++v++g+ ++ei+++++  ++ ++    l++l ++ +e++ +++i+++ e    k+++e    ++ ike+ ++e+  ++e 
  CCG93363.1  19 KWLKKEGERVQSGDALCEIETEKITTEIYAEkegiLHILVKEGSEVKVGQTIAQLeELPSGKMEQE---PSASIKEEEEKEEKTVLEP 103
                 67899***************9988776654412226667777777777777777766667777765...4456666666666555555 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.007
      HlyD_2  66 viksnaegivkyfvkeGdkvkkgkkvaeiqkseadeklkekletlnerikeienne 121
                  i++++egi++ +vkeG  vk g+ +a+ ++  + ++++e    ++e+ +  e++ 
  CCG93363.1  45 EIYAEKEGILHILVKEGSEVKVGQTIAQLEELPSGKMEQEPSASIKEEEE-KEEKT 99 
                 689**************************999999999998888887633.33333 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.22       8      73 ..       3      74 ..       1      87 [. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
                   EEETT.T-EEEESSSEEEEEEEEET..TTEEEEEEEECTCEEEEEEEESEES...S-TTEEE-TTCEEEEEB CS
  Peptidase_M23  8 iaapk.gtpVlAaadGtVvfagkke..gyGnvviidhgdgystlyahlskis...vkegqkVkaGqvIGtvg 73
                   i++p  g+++ +   G+ ++++ ++  + + +  i+ ++ ++ +ya  + i    vkeg +Vk Gq+I++  
     CCG93363.1  3 IKMPSvGESIESGLIGKWLKKEGERvqSGDALCEIETEKITTEIYAEKEGILhilVKEGSEVKVGQTIAQLE 74
                   5555446666666666654444422325578888999999999999977755566**************876 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.9e-05     0.098      38      70 ..      21      53 ..       3      56 .. 0.91
   2 ?    0.4   0.4      0.29   5.8e+02      39      58 ..      58      80 ..      52     110 .. 0.75
   3 ?   -4.1   1.0       6.9   1.4e+04     103     118 ..     134     149 ..     132     153 .. 0.72
   4 ?    0.0   0.0      0.37   7.3e+02      18      49 ..     217     247 ..     207     250 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.9e-05
                ---TT-EE-TT-EEEEEEESS-EEEEE-SSSEE CS
       GCV_H 38 lpevgtkvkkgeslaavEsvKaasevyapvsGe 70
                l+++g++v+ g++l  +E+ K ++e+ya+ +G 
  CCG93363.1 21 LKKEGERVQSGDALCEIETEKITTEIYAEKEGI 53
                89**************************99996 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.29
                --TT-EE-TT-EEEEEE...ESS CS
       GCV_H 39 pevgtkvkkgeslaavE...svK 58
                 ++g +vk g+++a++E   s+K
  CCG93363.1 58 VKEGSEVKVGQTIAQLEelpSGK 80
                46799********9999444555 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 6.9
                 GGGGGGSEEHHHHHHH CS
       GCV_H 103 leeleeLlsaeeyekl 118
                 +ee+ +L+++e+ ek 
  CCG93363.1 134 KEEALQLMEEEKEEKE 149
                 5778889998887765 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.37
                 EEEEE-HHHHHHH-SEEEEE---TT-EE-TT- CS
       GCV_H  18 atvGitdfaqeelgdvvfvelpevgtkvkkge 49 
                 +++G+ +f   ++ + +  ++pevg++++++e
  CCG93363.1 217 VKLGLMSFFVRAVVEAL-KKIPEVGARIEEDE 247
                 56677777666666655.48999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1324  (0.0738468); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 2547.74
//
Query:       CCG93364.1  [L=466]
Description: dihydrolipoamide dehydrogenase (E3 component of 2-oxoglutarate dehydrogenase complex)(Glycine oxidation system L-factor) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-63  212.3   0.0    1.1e-62  212.0   0.0    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    5.8e-22   78.0   0.0    1.1e-21   77.1   0.0    1.5  1  Pyr_redox_dim   Pyridine nucleotide-disulphide oxidoreductase
    3.5e-20   72.3   2.6    4.4e-17   62.4   0.0    3.2  3  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    3.5e-09   36.2   2.0    3.8e-06   26.2   1.5    3.1  2  GIDA            Glucose inhibited division protein A
    4.1e-09   36.3   0.0      1e-08   35.0   0.1    1.8  2  FAD_oxidored    FAD dependent oxidoreductase
    9.2e-09   34.9   4.7    1.9e-06   27.2   1.0    3.4  4  FAD_binding_2   FAD binding domain
    1.2e-08   35.0   1.4    1.3e-05   25.3   0.8    2.5  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    1.1e-06   28.1   6.7     0.0084   15.4   0.3    2.9  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    1.9e-06   26.8   7.4    0.00019   20.2   0.7    3.5  4  HI0933_like     HI0933-like protein
    4.4e-05   22.9   4.9     0.0073   15.6   0.5    2.5  2  FAD_binding_3   FAD binding domain
    0.00021   20.7   0.0       0.42    9.9   0.0    2.3  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    0.00069   18.9   5.2     0.0096   15.2   1.1    3.1  3  Thi4            Thi4 family
    0.00085   19.2   0.4       0.25   11.2   0.0    2.8  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0051   16.2   0.3        2.6    7.4   0.0    3.0  4  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
  ------ inclusion threshold ------
      0.013   15.1   5.7      0.074   12.6   0.2    3.5  4  DAO             FAD dependent oxidoreductase
      0.014   15.0   0.4        1.9    8.0   0.0    2.6  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
      0.024   13.8   0.0      0.056   12.6   0.0    1.6  1  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
      0.035   13.2   1.6        1.4    7.9   0.2    2.5  3  Lycopene_cycl   Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.0   0.0   1.1e-65   1.1e-62       2     294 .]       5     327 ..       4     327 .. 0.94

  Alignments for each domain:
  == domain 1  score: 212.0 bits;  conditional E-value: 1.1e-65
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH.........................HHHHCHHHHCCCC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias.........................evvkklnqgiell 70 
                  dv +iG+Gp+G+ aa+++aq g++v+++e    l+gtcln+gc++skall+ +e +  a+                         +vv kl +g+++l
   CCG93364.1   5 DVGIIGSGPGGYVAAIRAAQLGLNVAIIEkdktLGGTCLNVGCIPSKALLSLSEYYYFAKtkfaengllvenlrfdldklmkkkdQVVHKLVKGVDFL 102
                  899*************************99999***********************9999*************************99*********** PP

                  HCCTCEEEEESCEEEEETEEEC.....TCEEEEEESEEEE---EEE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  71 lgeevvkidpgkkkvklekkke.....gdeekiaydklvlAtGssprdl.gipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaala 162
                  ++++++++ +g + +++ +++      g e+ki++++++lA+Gs p  l  +p        + +++ds+ al+   +p++++v+G+G++G+El ++++
   CCG93364.1 103 MKKNGIEVFHGMGSLVDPQTVLiaeenGGERKIKAKNIILASGSAPASLsFLPPF------NDQIVDSTSALQFSSVPRSMAVIGAGAVGLELGSVWS 194
                  *****************9999899999999****************999777766......33689******************************** PP

                  HHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE...EEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2 163 klgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngekle...vvledgeeidadlvvvavGvrpstelle.eklglelderg 256
                  +lg +v+++e ++r+++ +d+++s +le  l+++G+e+ l+t++  +++n++++    v   +  ++ ++ v+vavG+ p t +l+ +++g+ ++++g
   CCG93364.1 195 RLGTKVYVIELLPRICPLMDHSVSSTLETFLRNQGIEFFLNTKIISATSNTNEVIlelVSGPKTYSLSVEKVLVAVGRVPYTHGLNlQQIGISTTKKG 292
                  **************************************************9944434444555555******************************** PP

                  EEE--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 257 givvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                   ++v+ + +tn  +iyaiGD +   +gp+la+ A+ +G
   CCG93364.1 293 SVEVNAWWQTNFAHIYAIGDLV---EGPMLAHRAQLEG 327
                  **********************...*********9876 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   1.2e-24   1.1e-21       1     110 []     347     456 ..     347     456 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 1.2e-24
                    BEEEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTSB CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladti 96 
                    ip++++t+pe++ +G teee++aa+ ++k g ++f+ ngrala +  +gfvK+++dak++k+lG+h vGp  +eli+  + +   ++   d+    
     CCG93364.1 347 IPSIIYTSPEAGGIGFTEEELQAAKRDYKKGLSKFSINGRALAGDVGEGFVKILVDAKNDKILGIHGVGPVISELISMSTPLFLRKVNGVDFVGLP 442
                    79********************************************************************************************** PP

                    SSSSSTGGGGHCHH CS
  Pyr_redox_dim  97 hihPtlsealkeaa 110
                     +hPtlse+l+eaa
     CCG93364.1 443 LAHPTLSEVLREAA 456
                    **********9985 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.2     0.006       5.9       2      35 ..       6      39 ..       5      44 .. 0.91
   2 ?    0.3   0.1       1.1   1.1e+03      40      59 ..      93     112 ..      80     115 .. 0.60
   3 !   62.4   0.0   4.4e-20   4.4e-17       2      78 ..     177     250 ..     176     255 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.006
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                v ++G+G  g  +A  +a+lg +V ++e  ++l 
  CCG93364.1  6 VGIIGSGPGGYVAAIRAAQLGLNVAIIEKDKTLG 39
                679*************************988775 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHTTEEEEC CS
   Pyr_redox  40 eeaskilqeklekngievll 59 
                 +++ k +   ++kngiev +
  CCG93364.1  93 HKLVKGVDFLMKKNGIEVFH 112
                 33444456678999999976 PP

  == domain 3  score: 62.4 bits;  conditional E-value: 4.4e-20
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgvesvkl 78 
                 ++v+G+G +glEl++++++lg kV+v+e  +++++l+D+ +s+ l++ l+++gie+ lntk+ + + ++++   v l
  CCG93364.1 177 MAVIGAGAVGLELGSVWSRLGTKVYVIELLPRICPLMDHSVSSTLETFLRNQGIEFFLNTKIISATSNTNE---VIL 250
                 79****************************************************************99987...554 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   1.5   3.8e-09   3.8e-06       1      48 [.       5      57 ..       5     155 .. 0.70
   2 ?    3.8   0.0     0.025        25       3      28 ..     178     203 ..     176     227 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.8e-09
                CEEEE-SSHHHHHHHHHHHHTT--EEEE...ES-GGGTT--SSSSEEE-T..T CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi...thkldtiaelsCnpsiggi..a 48
                dv +iG G  G+ AA+ aa+lG++v++i       +t+++++C ps   +  +
  CCG93364.1  5 DVGIIGSGPGGYVAAIRAAQLGLNVAIIekdKTLGGTCLNVGCIPSKALLslS 57
                789*************************88878889**********9887551 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.025
                 EEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLi 28 
                  ViG+G  G+e     +rlG kv  i
  CCG93364.1 178 AVIGAGAVGLELGSVWSRLGTKVYVI 203
                 7**********************988 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.1     1e-11     1e-08       1      40 [.       5      44 ..       5     146 .. 0.93
   2 ?   -1.9   0.0       1.7   1.7e+03      89     119 ..     217     247 ..     181     259 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1e-11
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllts 40
                  Dv ++G+gp+G++AAi Aa+ G +v+++e+++ lGG+  +
    CCG93364.1  5 DVGIIGSGPGGYVAAIRAAQLGLNVAIIEKDKTLGGTCLN 44
                  899*********************************9755 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
  FAD_oxidored  89 akavleemlaeagvtvllntrlvevekegkr 119
                   + ++le +l+++g++ +lnt++++++ + ++
    CCG93364.1 217 VSSTLETFLRNQGIEFFLNTKIISATSNTNE 247
                   567899999999********99998877433 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   1.0   1.9e-09   1.9e-06       1      37 [.       5      41 ..       5      44 .. 0.94
   2 ?    4.8   0.0     0.012        12     178     204 ..     123     149 ..      82     169 .. 0.76
   3 ?    2.3   0.0     0.072        72       3      32 ..     178     207 ..     176     219 .. 0.92
   4 ?   -3.5   0.0       4.2   4.2e+03     375     405 ..     285     317 ..     276     329 .. 0.63

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.9e-09
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   Dv +iGsG +G++AA++aa+ Gl+va++ek +  gg+
     CCG93364.1  5 DVGIIGSGPGGYVAAIRAAQLGLNVAIIEKDKTLGGT 41
                   778****************************999986 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.012
                    EEEETTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 178 vvenpesgrevrirakavvlatgGfgr 204
                    v+  +e+g+e++i+ak+++la+g +++
     CCG93364.1 123 VLIAEENGGERKIKAKNIILASGSAPA 149
                    333359*****************9987 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.072
                    EEE--SHHHHHHHHHHHHTTT-EEEEESSS CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvekeq 32 
                     ViG+G+ GL  +   ++ G kv v+e  +
     CCG93364.1 178 AVIGAGAVGLELGSVWSRLGTKVYVIELLP 207
                    6*************************9766 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 4.2
                    EEEBETTSBE..STTEEESSBTEEE-STCEESS CS
  FAD_binding_2 375 Gvetdengrv..ldadgqpipGLYAaGevaagg 405
                    G+ t+ +g v      +++ +  YA+G    g 
     CCG93364.1 285 GISTTKKGSVevNAWWQTNFAHIYAIGDLVEGP 317
                    555555555532222344889999999887544 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.8   1.3e-08   1.3e-05       1      36 [.       8      43 ..       8      47 .. 0.96
   2 !    7.8   0.0    0.0038       3.8       1      32 [.     179     210 ..     179     235 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.3e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36
                   I+G+G +G vaA ++a+ g++v ++ek   lGG + 
     CCG93364.1  8 IIGSGPGGYVAAIRAAQLGLNVAIIEKDKTLGGTCL 43
                   9********************************996 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0038
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32 
                    ++GaG+ Gl + +  ++ g +v ++e  +r++
     CCG93364.1 179 VIGAGAVGLELGSVWSRLGTKVYVIELLPRIC 210
                    8*************************999886 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.6   1.5e-05     0.015       2      31 ..       8      36 ..       7      44 .. 0.91
   2 !   15.4   0.3   8.5e-06    0.0084     121     305 .]     133     311 ..     124     311 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.5e-05
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkgn 31
                 IiG GP G  aai + ++gl ++ i+Ek++
   CCG93364.1  8 IIGSGPGGYVAAIRAAQLGL-NVAIIEKDK 36
                 9*******************.7******84 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 8.5e-06
  Pyr_redox_3 121 etyeAkkviiAtGefdkPnklnipGeeklvkhyskvk.efhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienr 217
                  ++++Ak++i+A G    P  l++  + + +++ s+   +f     + ++ViG++  + +      r g +V v+     i      ++ s++ + e  
   CCG93364.1 133 RKIKAKNIILASGS--APASLSFLPPFNDQIVDSTSAlQF-SSVPRSMAVIGAGAVGLELGSVWSRLGTKVYVIELLPRICPL---MDHSVSSTLETF 224
                  589**********9..999999866665455555544255.4557899**************************999876665...456666666666 PP

  Pyr_redox_3 218 leelvkeekikvlfnaevkeikekeeeykvktedgkkvev..kddvvlatGykpdlsf..lkkslfeldedgrpvlteeteetnvpglflaG 305
                  l++    + i++  n+++ + + +++e+ ++  +g k+ +   ++v++a+G  p ++   l++ +++++++g ++++  + +tn+  ++ +G
   CCG93364.1 225 LRN----QGIEFFLNTKIISATSNTNEVILELVSGPKTYSlsVEKVLVAVGRVPYTHGlnLQQIGISTTKKGSVEVNA-WWQTNFAHIYAIG 311
                  654....4599********99999999998877776655544688899999877765513445888888888888875.7789******998 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.7     2e-07   0.00019       2      36 ..       5      39 ..       4      46 .. 0.93
   2 ?   -2.5   0.0       1.5   1.5e+03     149     165 ..     131     147 ..     116     150 .. 0.78
   3 !    5.9   0.1    0.0043       4.3       3      31 ..     177     205 ..     175     212 .. 0.90
   4 ?    2.8   0.0     0.039        39     110     163 ..     216     271 ..     208     278 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 dv +iG G+ G  aAi+aa+ g +V+++ek k+lg
   CCG93364.1  5 DVGIIGSGPGGYVAAIRAAQLGLNVAIIEKDKTLG 39
                 789****************************9998 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.5
                  TTEEEEESEEEE----S CS
  HI0933_like 149 seeeleadklvlAtGGl 165
                  +e++++a++++lA+G++
   CCG93364.1 131 GERKIKAKNIILASGSA 147
                  57899********9975 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0043
                  EEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVlllek 31 
                  ++viG+Ga Gl      ++ g +V ++e 
   CCG93364.1 177 MAVIGAGAVGLELGSVWSRLGTKVYVIEL 205
                  79*************************96 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.039
                  HHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE....TTEEEEESEEEE--- CS
  HI0933_like 110 divdallkelkeagvklrletevksvekeedgkfrvkt.k..seeeleadklvlAtG 163
                  ++ ++l++ l+++g+++ l+t++ s+++++++ + +++ +  ++ +l+ +k+++A+G
   CCG93364.1 216 SVSSTLETFLRNQGIEFFLNTKIISATSNTNE-VILELvSgpKTYSLSVEKVLVAVG 271
                  5677899999*************999888887.555553323677889999999999 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.5   7.4e-06    0.0073       2      35 ..       4      37 ..       3      41 .. 0.94
   2 !    9.1   0.4   0.00069      0.69       5      33 ..     178     206 ..     175     332 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.4e-06
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrst 35
                    dV I+G+Gp G ++a   ++ G +v ++ek +t
     CCG93364.1  4 FDVGIIGSGPGGYVAAIRAAQLGLNVAIIEKDKT 37
                   58*****************************876 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00069
                    EEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvekr 33 
                    +++GaG +Gl l+++ s+ G +v ++e  
     CCG93364.1 178 AVIGAGAVGLELGSVWSRLGTKVYVIELL 206
                    79************************965 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00099      0.98      31      62 ..       6      37 ..       2     103 .. 0.85
   2 !    9.9   0.0   0.00042      0.42      30      69 ..     176     215 ..     165     272 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00099
                 EEEESTSHHHHHHHHHHHHTT-EEEEEESSHH CS
  AlaDh_PNT_C 31 vlviGgGvaGlqAiatakglgakVtvlDvrpa 62
                 v +iG G  G  A+  a++lg +V +++++++
   CCG93364.1  6 VGIIGSGPGGYVAAIRAAQLGLNVAIIEKDKT 37
                 78*************************99875 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00042
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqles 69 
                   + viG+G +Gl+  ++ ++lg kV+v+++ p+    +++
   CCG93364.1 176 SMAVIGAGAVGLELGSVWSRLGTKVYVIELLPRICPLMDH 215
                  678*************************987766555555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.1   9.6e-06    0.0096      18      61 ..       4      46 ..       1      56 [. 0.87
   2 ?   -0.1   0.0      0.46   4.6e+02     125     157 ..      91     123 ..      55     145 .. 0.75
   3 ?    3.4   0.1     0.039        38      20      48 ..     177     204 ..     161     207 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.6e-06
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTS CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGG 61
                 Dv i+G+G+ G  aa   a+  +l+vai+e+  ++GG     G
  CCG93364.1  4 FDVGIIGSGPGGYVAAIRAAQL-GLNVAIIEKDKTLGGTCLNVG 46
                599**************99999.**************9876555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.46
                 EEETBTEEEEE..EEEEHHHHTCTTTSS.-B-EEE CS
        Thi4 125 ivregegvaGv..vinwtlvelahdtqscvDPlvi 157
                 +v++   v+Gv   ++   +e+ h+  s vDP+++
  CCG93364.1  91 VVHK--LVKGVdfLMKKNGIEVFHGMGSLVDPQTV 123
                 3333..45565335677889999*********997 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.039
                 EEEE--SHHHHHHHHHHHHCTTS-EEEEE CS
        Thi4  20 vvivGaGssGLtaayylakkpdlkvaile 48 
                 ++++GaG+ GL  + + ++  + kv ++e
  CCG93364.1 177 MAVIGAGAVGLELGSVWSRL-GTKVYVIE 204
                 789***************99.9*****99 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.4     0.018        18       2      32 ..       6      36 ..       5      44 .. 0.92
   2 !   11.2   0.0   0.00025      0.25       2      54 ..     177     229 ..     176     268 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.018
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdise 32
                v++iG+G  G   a  +a+ gl+V +++ ++
  CCG93364.1  6 VGIIGSGPGGYVAAIRAAQLGLNVAIIEKDK 36
                9*************************99876 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00025
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTS CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgk 54 
                  aviGaG +G ++ +v  + g +V +++  +++     ++++++le + +++ 
  CCG93364.1 177 MAVIGAGAVGLELGSVWSRLGTKVYVIELLPRICPLMDHSVSSTLETFLRNQG 229
                 69**************************9999998888888888888776665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1      0.01        10      39      68 ..       6      35 ..       2      61 .. 0.89
   2 ?   -3.4   0.0       5.4   5.4e+03     117     140 ..     103     126 ..     102     130 .. 0.82
   3 !    7.4   0.0    0.0026       2.6      37      70 ..     175     208 ..     162     243 .. 0.84
   4 ?   -2.9   0.0       3.7   3.7e+03      35      53 ..     405     423 ..     398     437 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.01
                  EEEES-SHHHHHHHHHHHHTT-EEEEESSS CS
  2-Hacid_dh_C 39 vGiiGlGrIGqavakrlkafgmkviaydrs 68
                  vGiiG G  G  +a r++++g++v ++++ 
    CCG93364.1  6 VGIIGSGPGGYVAAIRAAQLGLNVAIIEKD 35
                  9***********************998765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.4
                   STTTEEEEESS-GGGB-HHHHHHH CS
  2-Hacid_dh_C 117 mkkgailiNtaRGglvdeeaLlea 140
                   mkk+ i +  + G+lvd + +l a
    CCG93364.1 103 MKKNGIEVFHGMGSLVDPQTVLIA 126
                   999999999999999999987755 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0026
                   SEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgmkviaydrskk 70 
                   + +++iG+G++G ++  + + +g kv++++  ++
    CCG93364.1 175 RSMAVIGAGAVGLELGSVWSRLGTKVYVIELLPR 208
                   5789***********************9987665 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 3.7
                   TTSEEEEES-SHHHHHHHH CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqavak 53 
                   ++k +Gi G+G + ++++ 
    CCG93364.1 405 NDKILGIHGVGPVISELIS 423
                   5788999999987666655 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   7.5e-05     0.074       1      36 [.       5      41 ..       5      71 .. 0.93
   2 ?    1.0   0.0      0.26   2.6e+02     147     203 ..      94     147 ..      90     168 .. 0.67
   3 ?   -0.1   0.5      0.54   5.4e+02       3      12 ..     178     187 ..     176     204 .. 0.75
   4 ?    0.6   0.0      0.34   3.4e+02     154     229 ..     223     298 ..     214     332 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.5e-05
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsga 36
                dv iiG+G  G  +A  +a+ g  V+++ek++ +g g+
  CCG93364.1  5 DVGIIGSGPGGYVAAIRAAQLGlnVAIIEKDKTLG-GT 41
                899****************************9998.65 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECT.EEE.EEEEEEEE--GGG CS
         DAO 147 kltaalaraaealGveilegtevtgleeedgkvwgve.rttp.gen.daadavVnaaGaw 203
                 kl++++   ++++G+e++ g    +l ++    ++v   +++ ge+  +a+ +++a G  
  CCG93364.1  94 KLVKGVDFLMKKNGIEVFHG--MGSLVDP----QTVLiAEENgGERkIKAKNIILASGSA 147
                 66777777789999999999..4445343....3444466676776445555*****954 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.54
                 EEECTSHHHH CS
         DAO   3 viiGGGiiGl 12 
                 ++iG+G +Gl
  CCG93364.1 178 AVIGAGAVGL 187
                 8********9 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.34
                 HHHHHTT-EEEESECEEEE.EEEETCEEEEEEECTEEEE.EEEEEEE--G..GGHHHHHTT.CTTTSEEEEEEEEEEEEEE CS
         DAO 154 raaealGveilegtevtgl.eeedgkvwgverttpgend.aadavVnaaG..awsdllgll.keldlpispvrgqvlvlkp 229
                   ++++G+e++++t++ +  +++++ + ++ +  p + + ++++v +a G  +++  l    +  ++ is ++  ++ ++ 
  CCG93364.1 223 TFLRNQGIEFFLNTKIISAtSNTNEVILEL-VSGPKTYSlSVEKVLVAVGrvPYTHGL--NlQ--QIGISTTKKGSVEVNA 298
                 447899**********99724433333333.222222214678899999966665422..112..2366666666666644 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2     0.022        21       3      33 ..       6      36 ..       4      38 .. 0.93
   2 ?    8.0   0.0    0.0019       1.9       3      31 ..     177     205 ..     175     256 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.022
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S-H CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDide 33
                    + +iG+G  G v a+  a++g +v ++ +d+
      CCG93364.1  6 VGIIGSGPGGYVAAIRAAQLGLNVAIIEKDK 36
                    88*************************9987 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0019
                     EEEE--STTHHHHHHHHHHCTSEEEEE-S CS
  UDPG_MGDP_dh_N   3 isviGlGYvGlvtaavlaeighevigvDi 31 
                     ++viG+G vGl  + v +++g +v ++  
      CCG93364.1 177 MAVIGAGAVGLELGSVWSRLGTKVYVIEL 205
                     68**********************99865 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.6e-05     0.056     135     206 ..     123     189 ..      91     214 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.6e-05
  K_oxygenase 135 veskdaegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaei 206
                  v  ++++g e++++a+n++l+ G+ p+  ++l +++  +++v s ++l+       ++++aV+G+G  + e+
   CCG93364.1 123 VLIAEENGGERKIKAKNIILASGSAPASLSFLPPFN--DQIVDSTSALQFS---SVPRSMAVIGAGAVGLEL 189
                  4455678999************************98..89****9999987...799*********988876 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2    0.0014       1.4       1      34 [.       5      36 ..       5      60 .. 0.90
   2 ?   -3.0   0.0       2.8   2.8e+03     126     142 ..     131     147 ..     106     153 .. 0.76
   3 ?    3.9   0.1     0.023        23       2      34 ..     177     207 ..     176     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0014
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasp 34
                   Dv +iG+Gp g   A r   a+ gl+v +ie  +
     CCG93364.1  5 DVGIIGSGPGGYVAAIRA--AQLGLNVAIIEKDK 36
                   899***************..**********9765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.8
  Lycopene_cycl 126 ggrkirarlvvdargla 142
                    g+rki+a+ ++ a+g a
     CCG93364.1 131 GERKIKAKNIILASGSA 147
                    4569*******999943 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.023
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieasp 34 
                    ++viGaG+ gl l      ++ g kv +ie  p
     CCG93364.1 177 MAVIGAGAVGLELGSVW--SRLGTKVYVIELLP 207
                    58***********9988..9*******998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 3143.84
//
Query:       CCG93365.1  [L=389]
Description: Alanine racemase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-57  195.1   0.0    1.5e-57  194.8   0.0    1.1  1  Ala_racemase_N  Alanine racemase, N-terminal domain
    6.3e-43  145.5   0.0      1e-42  144.9   0.0    1.3  1  Ala_racemase_C  Alanine racemase, C-terminal domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.8   0.0   1.6e-61   1.5e-57       1     219 []      22     236 ..      22     236 .. 0.97

  Alignments for each domain:
  == domain 1  score: 194.8 bits;  conditional E-value: 1.6e-61
                     EEHHHHHHHHHHHHHHSCTTSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTSCSEEEEESCSTGGGHHHHHHTTEEEEES CS
  Ala_racemase_N   1 idldalrhNlrrlralagpgaklmavvKanayghgavevaralaeggadgfgvatleEalelreagitapilvlegfspeelaalaeydltvtvd 95 
                     id +alr N+r++r+++++++k++avvK++ayghg+v++ r l + g++ +g ++++E +elr agi++p+l+l ++ p e++++++++ +v+v+
      CCG93365.1  22 IDGQALRFNIRVARNRIPKKTKIIAVVKSDAYGHGLVPISRELVQSGIEVLGINNVDEVIELRNAGIQNPLLILCPILPPEAPLVIANNAWVVVS 116
                     899**************88*************************99************************************************* PP

                     SHHHHHHHHHHHHHTTS-EEEEEEBESSSSSSSBSCHHHHHHHHHHHHTTTEEEEEEE-S-SSTTSTS.HHHHHHHHHHHHHHHHHHHTTGGGSE CS
  Ala_racemase_N  96 sleqlealaaaareagkplrvhlkidtgmgRlGftpeeleellealaalpglrleglmtHfasadepd.eeteaqlarfeealeelekaglrppv 189
                     s +++++l++aa+  gk++ +hlkidtgmgRlGf+p+ + + +e++++l+ + +  ++tHfa ad+ d e+te+q+  + +++e ++  gl+   
      CCG93365.1 117 SFNEAKWLNNAAEHLGKKAIIHLKIDTGMGRLGFSPSNFVKEMEKIKKLSSVCIGAVCTHFAQADT-DlEATEKQWLELLKLKEYFK--GLP--- 205
                     *****************************************************************8.6699999************6..666... PP

                     EEEESHHHHHHSG.GGTTEEEESGGGGT-SS CS
  Ala_racemase_N 190 vslanSaaillaa.ahfdmvRpGialyGlsp 219
                     +++anSaa+++ + +++d+vR+G+alyGl+p
      CCG93365.1 206 IHVANSAALWRKSvYACDYVRIGLALYGLAP 236
                     9***********8688************987 PP

>> Ala_racemase_C  Alanine racemase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.0   1.1e-46     1e-42       1     124 []     247     374 ..     247     374 .. 0.97

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 1.1e-46
                     SEEEEEEEEEEEEESTTSEESGGGSEE-SSSEEEEEES--GGGTCGGGGT..TEEEETTEEEEEESEE-SSEEEEEECTSTT--TT-EEEEEE.E CS
  Ala_racemase_C   1 vmtlkarviqvkevkagegvgYgatyvaerdtriavvpiGYaDGlprals..gevlingkrvpvvGrvcMDqlmvdlteveevkvgdevvllg.e 92 
                     +m++k +v+ +ke+++++ ++Yg+ty+++++++iav++iGY+DG+ r+ls  + vli+gkr+pv G v+M+q+mvd++e +++k+g+e++l+g +
      CCG93365.1 247 IMSWKCKVVLIKELPKNHPISYGSTYRLKKPSKIAVLSIGYGDGYLRSLSnkAFVLIKGKRCPVRGAVTMNQIMVDISELPSCKIGEEAILIGtQ 341
                     69***********************************************9655****************************************55 PP

                     T.EEEEHHHHHHHHTSEHHHHHHTSHTTSEEEE CS
  Ala_racemase_C  93 g.eeitveelaeaagtisyeiltrlskrvprvy 124
                     g e+i+++ela+ agtisyeilt++++++pr y
      CCG93365.1 342 GkESINADELAKLAGTISYEILTNIHSNIPRQY 374
                     59*****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3043.45
//
Query:       CCG93366.1  [L=191]
Description: Glycoprotease family enzyme [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-09   37.4   0.0    2.5e-09   37.2   0.0    1.1  1  Peptidase_M22  Glycoprotease family


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.4e-13   2.5e-09      39     121 ..      39     117 ..      31     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.4e-13
                    HHHHHHTSTGGGEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHHHHCCHCTSECSSC.EEEEESSSTEEEEEE CS
  Peptidase_M22  39 ealaeaglsledldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleahalaarleekeefP.vvllvsGghtqvylv 121
                     +l++ +l+  ++++I v++gPG+f ++rvG+++A+g+++a n  ++ + ++  + l+ +     + P + +  ++++++++++
     CCG93366.1  39 DCLEKLNLASLKIEKIFVGTGPGSFSSIRVGIAAAQGISIAKNASILSIPSIWSIGLQFS-----HIPsLGIFSDARRGELFCS 117
                    6899************************************************99999985.....3588999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1591.67
//
Query:       CCG93367.1  [L=141]
Description: ATP/GTP binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-33  115.6   0.0    1.6e-33  115.3   0.0    1.0  1  TsaE      Threonylcarbamoyl adenosine biosynthesis protein Ts
  ------ inclusion threshold ------
       0.11   13.0   0.0       0.13   12.8   0.0    1.3  1  ABC_tran  ABC transporter


Domain annotation for each model (and alignments):
>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.0   1.8e-37   1.6e-33       2     124 ..      10     136 ..       9     138 .. 0.93

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 1.8e-37
                 SSHHHHHHHHHHHHHCH..TEEEEEEESTTSSHHHHHHHHHHHTT--.----TTTTSEEEEEE..SSEEEEE-TT-SSTHHHHHCTTCCCCSTSCEEEE CS
        TsaE   2 kseeetealgkklakal..gdvilLeGdLGaGKTtlvrglakalgve.evkSPTFtlveeYelekeglyHfDlYRledeeeleelgleeyleeeavvlv 97 
                 ks+eet +++k+l k +  g+v++L G+LG+GKT+lv+g a alg++ ev+SPTF+lv+ Ye ek +++H+DlYR+e+ ++  +  lee+l +ea+++v
  CCG93367.1  10 KSPEETINFAKELVKPCqgGEVFALIGELGSGKTQLVKGAALALGFKgEVTSPTFSLVHCYEGEKFDIFHIDLYRVENVDSTLSHYLEEILYAEAICFV 108
                 6899***********888999******************************************9999***********************99889**** PP

                 ETGGGGCCCS-..S-CEEEEEEEETCEEE CS
        TsaE  98 EWpekleellp..eedleieleeeeeere 124
                 EWp+k+e+llp  ++++ei++ +++ er+
  CCG93367.1 109 EWPQKIEKLLPpwTQYWEITIIAQN-ERK 136
                 *********97455999***98877.676 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.4e-05      0.13       9      29 ..      27      47 ..      20      94 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
                ETTSEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  9 kegekvaivGenGaGKStLlk 29
                + ge+ a++Ge G+GK+ L+k
  CCG93367.1 27 QGGEVFALIGELGSGKTQLVK 47
                669****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1133.31
//
Query:       CCG93368.1  [L=315]
Description: Thiamine monophosphate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-20   71.5   0.0    1.1e-19   70.9   0.0    1.3  1  AIRS      AIR synthase related protein, N-terminal domain
    2.1e-09   37.7   0.0    5.2e-09   36.4   0.0    1.6  1  AIRS_C    AIR synthase related protein, C-terminal domain


Domain annotation for each model (and alignments):
>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   1.2e-23   1.1e-19       1      93 [.      47     158 ..      47     159 .. 0.93

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 1.2e-23
                 SSSEE..........EEEEEEEE.EECCTCCCC........HHHHHHHHHHHHHHTTTEEEEEEEEEEEEC......HHHHHHHHHHHHHHHTT-EEEE CS
        AIRS   1 dDaav..........vvttdshnrpvlvepvhf........iGakavavnlsDlaamGArPlalllslalp......wleevvrglaeaaeelgvplvg 75 
                 +D+av          ++++d       ve+vhf        +G+ka+a +lsD+a+mG++Pl+ l  l ++      +++++++gl e a+++g++l+g
  CCG93368.1  47 EDCAViqsekkelyyLFKMD-----ATVENVHFdpstppewVGRKALARALSDIASMGGEPLYGLIGLGVNrtekveKIKQLYKGLTELARAIGMDLIG 140
                 69996666777777799***.....9999999999999************************99******9**************************** PP

                 EEEEEESSEEEEEEEEEE CS
        AIRS  76 GdtsfsneptisvtavGl 93 
                 G+t++sn+++i+vt+ G 
  CCG93368.1 141 GETTESNQLFIVVTVWGK 158
                 ***************996 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   5.8e-13   5.2e-09      56     149 ..     206     294 ..     196     300 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 5.8e-13
                 HHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHHHHHHHHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTC..CCEEEEEEEEESS CS
      AIRS_C  56 alkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpifdelesplemllsensGrllvavppeeadavlaileeegl..peaavIGevtake 149
                   +  +ka+ D+++ GL+ +l++ma+as+vg+eid++++p++++ +  + +l   +   ll++v++e++   +++l+ +    p  + IG+  + +
  CCG93368.1 206 K-GQWAKAMIDLSD-GLATDLPRMAKASNVGFEIDYEAIPARKNYG-LHNALTDGEDYELLFSVAKEKE---IDLLKHWPFevP-IKKIGTFSKNG 294
                 3.5789********.8***************************985.4666666777779999999999...666666655524.67777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2270.65
//
Query:       CCG93369.1  [L=259]
Description: Predicted metal-dependent membrane protease [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-16   59.8  12.5    2.6e-16   59.8  12.5    2.8  2  CPBP      CPBP intramembrane metalloprotease


Domain annotation for each model (and alignments):
>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   5.6      0.85   1.5e+04      79      79 ..      42      42 ..       7     129 .. 0.62
   2 !   59.8  12.5   1.4e-20   2.6e-16       4      91 ..     161     247 ..     158     248 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.85
                H CS
        CPBP 79 l 79
                +
  CCG93369.1 42 F 42
                1 PP

  == domain 2  score: 59.8 bits;  conditional E-value: 1.4e-20
                 THHHHHHHHHHHHHHHHHHHTTCHHHHHHHH.S-HHHHHHHHHHHHHCSGGGHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
        CPBP   4 lllvfllalllapllEEllfRglllqllqergsstlailissilFglaHlpngpsvllaalaGlvlgylylktgsllaaillHallnl 91 
                 +++++ l+l+ ap++EEllfRg+l+q ++++  ++ ai++s+++F+l+H++  +++l+++++G++l+++y+ +g l+ ++++H+++n 
  CCG93369.1 161 IAVLLALILVAAPIGEELLFRGFLYQFFRSHLTKRSAIVLSGLIFALLHIHW-ITFLPLFIFGMILAAVYEFSGCLILSMAIHFWFNG 247
                 57788999**********************955599*************998.78*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1913.07
//
Query:       CCG93370.1  [L=330]
Description: Periplasmic serine protease, ClpP class [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-48  164.3   0.0    2.6e-48  163.9   0.0    1.2  1  Peptidase_S49  Peptidase family S49
    5.3e-11   42.7   1.1    8.4e-07   29.0   0.2    2.4  2  CLP_protease   Clp protease
  ------ inclusion threshold ------
      0.034   13.1   0.1      0.047   12.7   0.1    1.2  1  SDH_sah        Serine dehydrogenase proteinase
       0.11   11.8   0.2       0.85    8.9   0.0    2.3  3  ECH_1          Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.9   0.0   5.7e-52   2.6e-48       4     153 ..     124     274 ..     121     275 .. 0.97

  Alignments for each domain:
  == domain 1  score: 163.9 bits;  conditional E-value: 5.7e-52
                    HTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--HHHHHHHHHHHHHHHHHH CS
  Peptidase_S49   4 kakkPvvasaenvaaSggYylasaadkivanpstivgsiGvitqllnlenlldklgvevqvvkaGeyksavslrrelteeereilqrlldetyqqF 99 
                    ++ kPvv+++e++aaSggYy a++  + +an  ti+gsiGvi++ + +++l++k+g+++ ++k+G+ k+ ++++re+t+ee++++q l+dety++F
     CCG93370.1 124 RNVKPVVIYMESMAASGGYYSAVGGTYLMANDLTITGSIGVIMESFLVKDLMEKVGIKALTFKSGKMKDLLNPTREMTPEEQAFVQGLIDETYNKF 219
                    678********************************************************************************************* PP

                    HHHHHHHHTS-HHHHHC.HHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCHC CS
  Peptidase_S49 100 vqtVaknRnlsveqvdk.iAegrvltgqqAlklgLvdelgtvddavaeleelakv 153
                    v+ Vak+R+++++++++ +A+gr++ gq+Alk+gL+d lg+++da ++ +el+kv
     CCG93370.1 220 VSIVAKERHMDINKLKNnLADGRIFMGQDALKNGLIDGLGYFEDAFNKCKELSKV 274
                    **************98538********************************9987 PP

>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.2   1.9e-10   8.4e-07      26      98 ..      76     150 ..      55     160 .. 0.85
   2 !   11.9   0.0   3.3e-05      0.15     132     177 ..     212     257 ..     207     260 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.9e-10
                   SHHHHHHHHHHHHHHHHH-SSS-EEEEEEE--B-HHHHHHHHHHHHHS..SS-EEEEEEEEEETHHHHHHHTS-T CS
  CLP_protease  26 ddevankiiaqLllLeaedpdkdillyinspGGsvtaglaIydtmqyi..kpdvsticlGlaaSmgslllaagek 98 
                   +++  +++  qL ++ + ++ k i + inspGG+v+a+  Iy  +++     +v+++   +aaS g   +++g++
    CCG93370.1  76 TQNAVEDMKVQLKAAREDKKVKGIIIAINSPGGEVNASDVIYHEIRLTrnVKPVVIYMESMAASGGYYSAVGGTY 150
                   5667778888999**999***************************998422355567779****99999999886 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.3e-05
                   HHHHHHHHHHHHHHHHTS-HHHHHHHHCSTEEEEHHHHHHHTSSSE CS
  CLP_protease 132 llkikerlneilakhtgqslekiekdldrdtflsaeeAveyGLide 177
                   ++++ ++ ++i+ak+ +++++k++++l   +++  ++A++ GLid 
    CCG93370.1 212 IDETYNKFVSIVAKERHMDINKLKNNLADGRIFMGQDALKNGLIDG 257
                   677888999************************************6 PP

>> SDH_sah  Serine dehydrogenase proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1     1e-05     0.047      49     154 ..      54     161 ..       6     192 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1e-05
     SDH_sah  49 ksrvitmihrqesigflGipiykfitiedseevlrairltpkdkpidliihtpGGlvlaatqiakalkehka..ktrvivphyamsGGtlialaadeii 145
                 k   i++ih +  i+      +    +ed +  l+a r   k k i + i +pGG v a++ i + ++  +   ++ + +   a sGG   a+    ++
  CCG93370.1  54 KDVKIALIHLRGLISQDEGGTFTQNAVEDMKVQLKAAREDKKVKGIIIAINSPGGEVNASDVIYHEIRLTRNvkPVVIYMESMAASGGYYSAVGGTYLM 152
                 44558888888888888888888999*************************************998775554003444456788899998888777666 PP

     SDH_sah 146 ldenavlGp 154
                  ++ ++ G 
  CCG93370.1 153 ANDLTITGS 161
                 666666665 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00019      0.85      19      47 ..      74     102 ..      58     113 .. 0.91
   2 ?   -0.6   0.1      0.15   6.7e+02      93     137 ..     137     181 ..     116     240 .. 0.64
   3 ?   -1.0   0.0      0.19   8.7e+02     153     171 ..     238     256 ..     210     259 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00019
                 EE-HHHHHHHHHHHHHHHHSTTECEEEEE CS
       ECH_1  19 alsaelltEliqalekleddksvravvLt 47 
                 +++++ ++++   l+ +++dk+v++++++
  CCG93370.1  74 TFTQNAVEDMKVQLKAAREDKKVKGIIIA 102
                 7999***********************96 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.15
                 EEE-SEEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCH CS
       ECH_1  93 aavnGaaigGGlelalacDiviaadnasfglnelklGlipgaggt 137
                 aa  G+  + G    +a D++i +   +++ ++l   l+ ++g++
  CCG93370.1 137 AASGGYYSAVGGTYLMANDLTITGSIGVIMESFLVKDLMEKVGIK 181
                 445566556566666777777777777777766665555544444 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.19
                 HHHT-EEEHHHHHHCTSSS CS
       ECH_1 153 lllgkkisaqealkvGlvd 171
                 l  g+ + +q+alk Gl+d
  CCG93370.1 238 LADGRIFMGQDALKNGLID 256
                 556788999*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2245.10
//
Query:       CCG93371.1  [L=509]
Description: Methionyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-94  314.3   2.5    6.4e-52  176.6   0.0    2.2  2  tRNA-synt_1g  tRNA synthetases class I (M)
    3.4e-28   98.3   1.3      6e-13   47.9   0.2    4.5  4  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
    1.5e-17   63.9   0.1    4.6e-09   36.0   0.2    2.2  2  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
      1e-06   28.8   0.1    2.5e-06   27.5   0.1    1.7  1  Anticodon_1   Anticodon-binding domain of tRNA
      7e-06   25.2   0.0     0.0045   15.9   0.0    2.2  2  tRNA-synt_1f  tRNA synthetases class I (K)


Domain annotation for each model (and alignments):
>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4   0.9   1.4e-43   5.2e-40       2     141 ..       6     146 ..       5     151 .. 0.97
   2 !  176.6   0.0   1.8e-55   6.4e-52     178     390 ..     154     356 ..     146     357 .. 0.93

  Alignments for each domain:
  == domain 1  score: 137.4 bits;  conditional E-value: 1.4e-43
                   EEEE--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHH CS
  tRNA-synt_1g   2 lvttalpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkygrttseehke 98 
                   ++tta+ Y+ng++HlGh++e i aD++aRy+r++g+ v+f++g DehG++++ +Aeke+++++++++  +e++ +l+++l+is+d++ rtt+ +h +
    CCG93371.1   6 FITTAIDYVNGSPHLGHAYEKILADAIARYHRKKGDSVFFLTGVDEHGQKVQRSAEKENLNVKHFCDIQTEKFVQLWNQLHISYDAFARTTHPSHIQ 102
                   8************************************************************************************************ PP

                   HHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG.-EE.... CS
  tRNA-synt_1g  99 lvqeifkklkekgliyekeieqlycpkderflpdry.vegtCPk 141
                    v+e ++kl +kgliy ke e++y+ ++e+f +++  v+g+ P+
    CCG93371.1 103 YVREALQKLADKGLIYFKEHEGYYSLRQEQFVTEKDlVNGQWPE 146
                   *********************************98658888876 PP

  == domain 2  score: 176.6 bits;  conditional E-value: 1.8e-55
                   EE.EEEEEE-GGGGHHHHHHHH.HH-TT.SHHHHHHHH.HHHHT----EE-E...SS-SSS-EETTECCEEE-HHHHHHHHHHHTTTTT-...TTSG CS
  tRNA-synt_1g 178 vketehlffklskfekklkewieeeeke.leenvkkivkewlkegLkdlais...rdldwGipvPgaekkvlYVWldAligYisatkelakkkgeee 270
                   + ++ ++ffkls fe+ lk++++ +e+   +++ ++ ++  l++ L+dl+is   ++l+wGip+P +e+ v YVW+dAl++Y+s+    +       
    CCG93371.1 154 T-KEPNYFFKLSLFENWLKAYVHAHEEWlIPKSKRNELLGALEKPLSDLCISrpiSRLSWGIPLPFDENYVTYVWFDALLNYVSFARAGS------- 242
                   3.4889****************777766889999999***************6666899***************************9988....... PP

                   GGG.G--S......EEEEEGGG.HHHHHTHHHHHHHHTT----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE CS
  tRNA-synt_1g 271 kwkeyWakdkevelvhfigkdi.ikFHtifwPaillgaelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDldf 366
                     +++W +       h+igkdi i+ Hti+wP +l++ el++p++   h++++ +g+K+SkS g+ +++  +++ + ad+lRYyl++e    +D+df
    CCG93371.1 243 --HNWWPA-----QLHVIGKDIlIPAHTIYWPVMLQALELEQPHRFLIHGWWMNRGAKMSKSLGNYIDPIPYIQIYGADALRYYLLREMGLGQDADF 332
                   ..679*43.....69******95699*********************************************************************** PP

                   -HHHHHHHHHHHCCCHHHHHHHHH CS
  tRNA-synt_1g 367 swedfvervNseLadklgnlvnRv 390
                   + e++  r+ s+L ++lgnlv+R+
    CCG93371.1 333 TDEKIASRYASDLCNDLGNLVQRI 356
                   ***********************7 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.2   1.7e-16     6e-13      24     111 ..       4      89 ..       2     141 .. 0.76
   2 ?    2.1   0.0     0.013        45     378     433 ..     157     218 ..     148     224 .. 0.67
   3 !   41.1   0.0   1.9e-14   6.9e-11     496     599 ..     227     330 ..     218     333 .. 0.75
   4 ?   -0.6   0.0      0.08   2.9e+02     195     215 ..     410     430 ..     390     432 .. 0.69

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 1.7e-16
  tRNA-synt_1  24 efilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgreefrekvrewkaey 111
                  +f ++    yv+Gs+H+Gha++k+l d + ry+r kG +v +++G+D +G  ++   ek+    + k+  ++ +e+f++   +    y
   CCG93371.1   4 PFFITTAIDYVNGSPHLGHAYEKILADAIARYHRKKGDSVFFLTGVDEHGQKVQRSAEKEN--LNVKHFCDIQTEKFVQLWNQLHISY 89 
                  688888889*****************************************99999999883..3334566777777766544444443 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.013
  tRNA-synt_1 378 eqWfvrvkeladaalkave..kvqfvpkskekryaswle.niqdWciSR...qrwWGhripl 433
                  + +f +++ +++ + + v+  +  ++pksk+++    le   +d ciSR    + WG ++p+
   CCG93371.1 157 PNYFFKLSLFENWLKAYVHahEEWLIPKSKRNELLGALEkPLSDLCISRpisRLSWGIPLPF 218
                  5566666555544444444534446899977777766651689******665589****996 PP

  == domain 3  score: 41.1 bits;  conditional E-value: 1.9e-14
  tRNA-synt_1 496 wpfstlgypeedteelkkffpadmlleGlDiir.gWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltli. 591
                  w+ + l+y +  +   ++ +pa++ + G Di+         ++  al  ++P++  l+hg  ++  G KmSKslgN+idp+  i+ ygadalR++l+ 
   CCG93371.1 227 WFDALLNYVSFARAGSHNWWPAQLHVIGKDILIpAHTIYWPVMLQALELEQPHRF-LIHGWWMN-RGAKMSKSLGNYIDPIPYIQIYGADALRYYLLr 322
                  4445555555555666678999999999999751333344455567778889775.78999885.7******************************96 PP

  tRNA-synt_1 592 lsdvgrdi 599
                  +   g+d 
   CCG93371.1 323 EMGLGQDA 330
                  66666665 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.08
  tRNA-synt_1 195 adkeevklviaTTtPeTllgd 215
                  ++ ++ +  i TT P+Tl  +
   CCG93371.1 410 QHMKKLNRYIDTTAPWTLAKN 430
                  44555667899******9866 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.2   1.3e-12   4.6e-09      19     136 ..      14     131 ..       9     163 .. 0.87
   2 !   25.7   0.0   1.9e-09   6.6e-06     209     297 ..     249     338 ..     246     342 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 1.3e-12
                   TTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----S.B--BGGGGHHHHHHHHHH CS
  tRNA-synt_1e  19 vydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvkelaekfieefkkdleaLnvlkpt.leprvsekvdeiielvek 114
                   v    hlGha + +  D ++r+ +++g  v f+  v +   k+ + a++e+++vk++++ + e+f +  ++L +     +++    +++ + e ++k
    CCG93371.1  14 VNGSPHLGHAYEKILADAIARYHRKKGDSVFFLTGVDEHGQKVQRSAEKENLNVKHFCDIQTEKFVQLWNQLHISYDAfARTTHPSHIQYVREALQK 110
                   55678*********************************************************************9743144555579********** PP

                   HHHTTSEEE-TTS-EEE-GGG- CS
  tRNA-synt_1e 115 liekgyaYavsdgdvyfdvskk 136
                   l +kg  Y  +  + y++ +++
    CCG93371.1 111 LADKGLIYFKE-HEGYYSLRQE 131
                   ********998.6666666644 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 1.9e-09
                   EEEEEEGGGTTTHHHHHHHHHHHHSS.S--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS.-TTS-EEE-HHHHH CS
  tRNA-synt_1e 209 dihsGGiDLafPhhenelaqseaafd.kqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRllllsa.hyrsqldfkeelle 297
                   ++h+ G+D++ P h         a + +q  ++ +h g+ +  g kmsksL+n+i     ++ + + +lR++ll +    +  df++e+++
    CCG93371.1 249 QLHVIGKDILIPAHTIYWPVMLQALElEQPHRFLIH-GWWMNRGAKMSKSLGNYIDPIPYIQIYGADALRYYLLREmGLGQDADFTDEKIA 338
                   58999*********9988777666663666665555.888889****************************99875146777888888776 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1     7e-10   2.5e-06      18      89 ..     395     467 ..     388     498 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 7e-10
  Anticodon_1  18 ayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk..ra.aqevllevletllrllaPfmPfitEelw 89 
                  ++e+y+++ a++++++  +++l + y++ + p+   ++++++     +  v+  +l+ +  l+ P+mP +++++ 
   CCG93371.1 395 YFEKYDISMALQEVWQH-MKKL-NRYIDTTAPWTLAKNPKESqqLDcILFVCCACLKRYALLIDPVMPKTSDKIL 467
                  69**************7.7889.***********999999888534355************************98 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00068       2.4      34      71 ..      15      52 ..       9      70 .. 0.88
   2 !   15.9   0.0   1.3e-06    0.0045     240     311 ..     253     323 ..     245     343 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00068
  tRNA-synt_1f 34 SGliHiGnlrevltadlvaralrkrgeevrlilisDdm 71
                   G++H+G + e + ad++ar  rk+g++v +++ +D++
    CCG93371.1 15 NGSPHLGHAYEKILADAIARYHRKKGDSVFFLTGVDEH 52
                  59*************************99999888865 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.3e-06
  tRNA-synt_1f 240 aGkDhaaaGgSvdvsskia.eilggeaPekvvYelillkggekmssSkGnvltledwlevaepevlrflilrr 311
                   +GkD+       +++  ++ + l+ e+P+ +      ++ g+kms+S Gn++ +   ++++  + lr+++lr+
    CCG93371.1 253 IGKDILI--PAHTIYWPVMlQALELEQPHRFLIHGWWMNRGAKMSKSLGNYIDPIPYIQIYGADALRYYLLRE 323
                   6777776..4566677777899*********99999999999****************************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3181.16
//
Query:       CCG93372.1  [L=112]
Description: Bacterial nucleoid DNA-binding protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-25   86.6   1.0    1.2e-24   86.3   0.5    1.4  1  Bac_DNA_binding  Bacterial DNA-binding protein
    4.7e-07   29.9   0.1    8.5e-07   29.1   0.1    1.5  1  HU-HIG           HU domain fused to wHTH, Ig, or Glycine-rich


Domain annotation for each model (and alignments):
>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.5   1.4e-28   1.2e-24       1      90 []       4      94 ..       4      94 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 1.4e-28
                     EEHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEEEEE--BS-B-TTT--.B--B--EEEEEEEE-HHHHHHH. CS
  Bac_DNA_binding  1 mtkkeLieeiaektgltkkdakrvveafldtikeaLkkgekvelsgFGtfkvkerkartgrnpkTge.kvkiparkvvkFkpskelkeavn 90
                     +t+ +L+ +++ ktgl ++++++v+e++ld+  e  kk+e++el++FG f+v+ rkar+grnp++ e  + ip+r vv+Fkp+ke+k  +n
       CCG93372.1  4 LTRRDLVVKVSMKTGLPQQEVAKVFEEILDVFMEVFKKKETIELRNFGVFEVTLRKARIGRNPRNPErDILIPPRAVVRFKPGKEVKGILN 94
                     699****************************************************************99*****************98775 PP

>> HU-HIG  HU domain fused to wHTH, Ig, or Glycine-rich motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   9.5e-11   8.5e-07      30     119 ..       2      94 ..       1      99 [. 0.80

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 9.5e-11
      HU-HIG  30 gtvdfeeLceeiskrstlsrgdvkavldaledelkeaLadGerVeLgelGyFslslkskgvedekevransi...kkkkinfrpgkklkkelk 119
                 g+++ ++L+ ++s+ ++l++ +v+ v++++ d+  e  ++ e++eL ++G F ++l+      +     ++i    ++ ++f+pgk++k  l+
  CCG93372.1   2 GNLTRRDLVVKVSMKTGLPQQEVAKVFEEILDVFMEVFKKKETIELRNFGVFEVTLRKARIGRNPRNPERDIlipPRAVVRFKPGKEVKGILN 94 
                 678899**************************************************9855444433333333112456678888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 793.72
//
Query:       CCG93373.1  [L=405]
Description: Histidyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-42  144.9   0.0    1.5e-39  136.1   0.0    2.1  1  tRNA-synt_His   Histidyl-tRNA synthetase
    1.2e-09   38.4   0.0    1.3e-09   38.2   0.0    1.3  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    4.5e-09   36.4   0.0    8.3e-09   35.5   0.0    1.5  1  HGTP_anticodon  Anticodon binding domain
    1.5e-05   24.6   0.0    2.8e-05   23.7   0.0    1.5  1  tRNA-synt_2d    tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.1   0.0   3.3e-43   1.5e-39       1     304 [.       6     291 ..       6     293 .. 0.86

  Alignments for each domain:
  == domain 1  score: 136.1 bits;  conditional E-value: 3.3e-43
                    T---EETCHHHHHHHHHHHHHHHHHHTT-EEEE--SEEEHHHHCTTSTCC.HHHS-EEE-TTSSEEEE-SSSHHHHHHHHHHHHH.TSS-EEEEEE CS
  tRNA-synt_His   1 glrdllpeeaekieelrrrlldlfeswGYelVspPllEyldslltgaged.ldqtfklvDqsgrllglRaDiTpqvaRiaahrln.rerplRlcYa 94 
                    g+rd++p++++ ++ l +r  +++++  + +   P+lE l+ +++++ge+ l+q++ + D+ +r ++lR+++Tp  aR+   + +  ++p ++ ++
     CCG93373.1   6 GFRDFYPPDFAFRQLLFSRWREICRRFNFVEYEGPVLESLELYQKKSGEEiLNQIYHFLDKGNRIVALRPEMTPTLARMIEAHYKeYKKPIKWFSI 101
                    89*********************************************999678**************************9998888********** PP

                    EEEEESS-SSTT--CCEEEEEEEEESS-SHHHHHHHHHHHHHHHHHHCTS..SSEEEEEEETCHHHHHHHHTT--HHHHHHHHHHHHCT-HHHHHH CS
  tRNA-synt_His  95 GsvlrtrpdglgrsreplQvGaEliGaegleadlEvlslllealeaaagv..kelrldlghvglvralleaaglsesleeallaalarkdlaelke 188
                     +++r ++++ gr re +Q+ + +iG+++lead+E+++l++++l  ++g+  +++ + +++ +++++ l + g++ ++  ++++a+++ ++   +e
     CCG93373.1 102 PQLFRYERAQKGRLREHFQLNCDIIGEADLEADIELINLAIDILR-SFGLgkEDFIVRISDRQFWSEFLTKKGVAIEEWYQFFQAIDKIERDPKEE 196
                    ********************************************5.86643389999999999999999999999999999999998888877666 PP

                    HHHCCTTHHHCCHCC...HCCHCCCHHHHCHCCHCTHHHHHHHHHHHHHHHHHHHHHHHH-TTEEE-TT--TTTTT--SEEEEEEETT-S.S-SEE CS
  tRNA-synt_His 189 laaeaglkealrellkalelygdaevleealealaaapalqaaldeleelaallealakpevrvtlDlaelrgyeYytGlvFaayaegvg.qaiar 283
                    + ++               l+g a+++ e+ e+ ++        +++e + + l++++  e   ++Dl  +rg++YytG+v++++ +  + +aia+
     CCG93373.1 197 IERR---------------LGGLAQEVFELIEKPCY-------WERFEVVLEGLRHRK-LEEYAKIDLRIVRGLAYYTGVVYEIFDKAGKfRAIAG 269
                    6665...............33334444444333333.......445555556666553.556679********************9854337**** PP

                    EEEECTTTGGG.T---EEEEEE CS
  tRNA-synt_His 284 GGrYdelgaaf.grarpAtGfs 304
                    GGrYd+l++ f g+  pA+Gf 
     CCG93373.1 270 GGRYDDLLKLFgGEDIPAVGFG 291
                    ***********99********6 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0     3e-13   1.3e-09       1     110 [.      61     183 ..      61     392 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 3e-13
                   EEEEETTSEEEEE-SSSHHHHHHHHHHHEEEBGGSSEEEEEEEEEEBTTTSTBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.. CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  tRNA-synt_2b   1 YkledrndreyiLkPtneetfvelirdevlrskrLPlklyqiqtkyRdEksdsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlgl. 96 
                   Y + d+ +r  +L+P+ ++t++++i  +  ++++ P+k + i  ++R+E+  ++G  R+re  q ++ +++ ++   + + +li+++ +i++++gl 
    CCG93373.1  61 YHFLDKGNRIVALRPEMTPTLARMIEAH-YKEYKKPIKWFSIPQLFRYERA-QKG--RLREHFQLNCDIIGEAD--LEADIELINLAIDILRSFGLg 151
                   7788899999*****************9.999999****************.***..**************999..89999**************95 PP

                   SCEEEEEEGTTSC...................B CS
                   xxxxxxxxxxxxx...................x RF
  tRNA-synt_2b  97 efraiielmsaks...................a 110
                   ++  i+++ ++ +                   +
    CCG93373.1 152 KEDFIVRISDR-QfwsefltkkgvaieewyqfF 183
                   55555555322.123344445555555555550 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   1.8e-12   8.3e-09      20      93 ..     331     403 ..     315     404 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 1.8e-12
                     HHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHHH CS
  HGTP_anticodon  20 klaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklke 93 
                      l e+Lr  g++ve+     +++k++++a+ l+ +fa++v ek + +g v+++++d+r+q  +++++lv++l++
      CCG93373.1 331 LLIEQLRSSGFSVEFSFHPLKMKKQLAQAQSLNARFALFVTEKLA-EGFVELKNMDERKQFVIPVEQLVGFLEK 403
                     5779**************************************988.*************************987 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   6.2e-09   2.8e-05      50     134 ..      42     128 ..      17     164 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 6.2e-09
                   TSTTTSTTTSHHHCHTTSEBTCTSSS-ECESEEE-SSTHHHHHHHH....TTS-SSEEEEEEEEEEBSST-SSSB-SEEEEEEEEEEET CS
  tRNA-synt_2d  50 fdaLnvpqdhpaRdmqdtFylkkpekaveekllLRthttavqirtl....ekkkppikiisigrvfRrdavDathlaeFhqveglvvde 134
                    + L++ q+++  ++ +  y   ++   ++ + LR  +t++ +r++    ++ k+pik +si + fR +   + +l e +q+++ +++e
    CCG93373.1  42 LESLELYQKKSGEEILNQIYHFLDKG--NRIVALRPEMTPTLARMIeahyKEYKKPIKWFSIPQLFRYERAQKGRLREHFQLNCDIIGE 128
                   46677777777777666666655555..77899*************9999999******************************988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2614.00
//
Query:       CCG93374.1  [L=607]
Description: Aspartyl-tRNA synthetase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.4e-106  353.4   0.0   1.1e-105  353.2   0.0    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    3.5e-21   75.2   0.0    6.8e-21   74.3   0.0    1.5  1  GAD              GAD domain
    4.6e-16   58.6   0.1    1.2e-15   57.2   0.1    1.8  2  tRNA_anti-codon  OB-fold nucleic acid binding domain
    3.4e-05   23.5   0.1     0.0052   16.3   0.1    2.6  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)
  ------ inclusion threshold ------
       0.04   13.9   0.0      0.059   13.3   0.0    1.5  1  tRNA-synt_2b     tRNA synthetase class II core domain (G, H, 
       0.24   11.5   0.0       0.41   10.7   0.0    1.3  1  DUF4975          Domain of unknown function (DUF4975)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.2   0.0  3.8e-109  1.1e-105       1     313 [.     126     564 ..     126     565 .. 0.99

  Alignments for each domain:
  == domain 1  score: 353.2 bits;  conditional E-value: 3.8e-109
                  .CCHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   1 seelrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqia 98 
                  +eelrl +r+ldlr++k+ + l+lr++vt  vr+yl+++gf+eietPiLsks t+egar+F+v+sr  +++f+aL+q+pq+y++ll+vagid++fqia
   CCG93374.1 126 NEELRLSFRFLDLRRKKLLNSLKLRHQVTYVVREYLTSKGFLEIETPILSKS-TPEGARDFLVPSRLSPGKFYALPQAPQQYKQLLMVAGIDKYFQIA 222
                  5899************************************************.********************************************* PP

                  EEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS-SS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2  99 raFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaieklneigkdldkaderalv 196
                  r+FR+Ed+r+dr++ EFtqi++e sf+  +di+q +ee+i++++++v  ++             +l+ pf r+tyk+a++      +++dk+d+r+  
   CCG93374.1 223 RCFRDEDLRSDRQP-EFTQIDIEASFVVVDDILQWVEEMIQQIFSKV-LGI-------------ELSLPFARITYKQALDL-----YGSDKPDLRIAW 300
                  **************.********************************.778.............999**************.....************ PP

                  H................................................................................................. CS
                  x................................................................................................. RF
  tRNA-synt_2 197 k................................................................................................. 197
                  +                                                                                                 
   CCG93374.1 301 Qiqdvgevfentefkifrevlarggvikalnakqaspvvgptgiaeleelaksmgakglayiriedkewkspivkffsmeerkklenvlgiepadlil 398
                  ************************************************************************************************** PP

                  ............................HS--SEEEEEEEB............GGGSTTCBBBSTTS.........TTBBSEEEEEETTEEEEEEEEB CS
                  ............................xxxxxxxxxxxxx............xxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 198 ............................keknepvfvtdfP............aelkpFyarkeedd.........kkltesyDllingvElvgGslR 246
                                              ++++++v+vtdfP            + ++pF+++ +ed          + ++ +yD+++ngvEl+gGs+R
   CCG93374.1 399 fsagpwdqacqvlgkvrlqlaemtrsvpSNEWKFVWVTDFPlfeyspleqkwnSVHHPFTRPCQEDIgkldsgrydEIRALAYDIVLNGVELGGGSIR 496
                  ******************************************************************9******************************* PP

                  --SHHHHHHHHHHCCHH.SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 247 iedpeeleeklkskgld.eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  i+++e++e+++   g+d e+++  f+++l+a++yGapphgG++lGldR+vmll g+e IrdviaFPk+
   CCG93374.1 497 IHEKELQEKIFSILGIDkERQKLLFGHLLKAFQYGAPPHGGIALGLDRFVMLLSGAETIRDVIAFPKN 564
                  *****************8888899******************************************97 PP

>> GAD  GAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   2.3e-24   6.8e-21       1      95 []     317     411 ..     317     411 .. 0.94

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 2.3e-24
                 HHHHHHSTEEEEEEEETTG-TTTSH.HHHHHHHHHHHHTTHSHCEEEEESSGGEETTTCCCS-HHHHHHHHHHCT--TTEEEEEEEEEHHHHHHHH CS
         GAD   1 fsealksggsvkalrvpggaaklsr.keideleefakelgakglawikvegegltgpiakflteeevkklleavgaeegDillfvAdkkktvnkal 95 
                 f+e+l+ gg++kal+++++ +  ++   i elee+ak++gakgla+i++e+++ ++pi+kf++ ee kkl + +g e+ D++lf A++++++++ l
  CCG93374.1 317 FREVLARGGVIKALNAKQA-SPVVGpTGIAELEELAKSMGAKGLAYIRIEDKEWKSPIVKFFSMEERKKLENVLGIEPADLILFSAGPWDQACQVL 411
                 89****************5.66665278****************************************************************9976 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.1   4.2e-19   1.2e-15       1      76 []      25     110 ..      25     110 .. 0.93
   2 ?   -3.5   0.0       3.7   1.1e+04      16      36 ..     357     378 ..     352     390 .. 0.64

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 4.2e-19
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET...HHHHHHHTTS-TTSEEEEEEEEEECTTS.........SEEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr...eeatklaenlkeGdvvrvtGrvkrrpgg.........elelkveeiell 76 
                      V+++G+v+s+  r++g+++f+dlrD++g  qvv+ +      ++ a+++k + v++v G v +rp g         e+el +e++e+l
       CCG93374.1  25 VSLCGWVQSK--RDHGGLLFVDLRDREGVTQVVFHPdkdPVLFASAKQIKDEFVIKVVGVVVERPAGtknaaiptgEIELEAENLEIL 110
                      89********..**************************999***********************666666677777*********997 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.7
                      TTEEEEEEEETT.EEEEEEEET CS
  tRNA_anti-codon  16 gkvifidlrDgt.griqvvlfr 36 
                      +++++i ++D++  +  v +f+
       CCG93374.1 357 KGLAYIRIEDKEwKSPIVKFFS 378
                      6888999999885555555555 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.7e-06    0.0052     102     156 ..     216     268 ..     201     283 .. 0.72
   2 !    4.3   0.0    0.0083        25     215     235 ..     539     559 ..     524     564 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.7e-06
                   EEEEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHHHCTST CS
  tRNA-synt_2d 102 ikiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleellkklfgae 156
                    k++ i r+fR +++ + +++eF+q++     + v ++d++  +ee+++++f + 
    CCG93374.1 216 DKYFQIARCFRDEDLRSDRQPEFTQIDIE--ASFVVVDDILQWVEEMIQQIFSKV 268
                   699**********************9953..344666666666666666666543 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0083
                   EEEHHHHHHHHHT-SSGHHHH CS
  tRNA-synt_2d 215 GlGveRlamlkygieDiRelv 235
                    lG++R+ ml  g e iR+++
    CCG93374.1 539 ALGLDRFVMLLSGAETIRDVI 559
                   4899**************976 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     2e-05     0.059      38     120 ..     217     298 ..     216     550 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
                   EEEEEEEEEBTTTSTBCTTTB-SEEEEEEEE.EEESGGGHHHHHHHHHHHHHHHHHHT.T.SC...EEEEEEGTTSCBTTSEEEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx...xxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  38 klyqiqtkyRdEksdsrGLlRvreFhqkdgy.vfhaeaslddslrdlikaisriferl.glef...raiielmsaksadykdkkefea 120
                   k++qi +++RdE    +   R+ eF+q d + +f+  +   d+l+ +++ i++if+++ g+e    +a i   +a ++ ++dk ++ +
    CCG93374.1 217 KYFQIARCFRDEDL-RSD--RQPEFTQIDIEaSFVVVD---DILQWVEEMIQQIFSKVlGIELslpFARITYKQALDLYGSDKPDLRI 298
                   689*********97.446..999******972566566...55556666667777776466543332222223334455555555554 PP

>> DUF4975  Domain of unknown function (DUF4975)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014      0.41      56     122 ..      23      89 ..      16      95 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
     DUF4975  56 nkisftvktseksdkFGislvrgtDskkyysivvnpedrklnfekegeegkgfieaidevafekpaD 122
                  k+s+   +++k d+ G+ +v+  D++ + ++v+ p+++ + f +  +  ++f+ ++ +v++e+pa 
  CCG93374.1  23 QKVSLCGWVQSKRDHGGLLFVDLRDREGVTQVVFHPDKDPVLFASAKQIKDEFVIKVVGVVVERPAG 89 
                 6888888999*******************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4144.37
//
Query:       CCG93375.1  [L=476]
Description: Pyruvate kinase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-111  372.6   0.1   2.1e-111  372.2   0.1    1.1  1  PK        Pyruvate kinase, barrel domain
    1.6e-15   57.4   0.0    4.8e-15   55.8   0.0    1.8  1  PK_C      Pyruvate kinase, alpha/beta domain
  ------ inclusion threshold ------
       0.15   12.4   0.0       0.36   11.2   0.0    1.6  1  FAO_M     FAD dependent oxidoreductase central domain


Domain annotation for each model (and alignments):
>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.2   0.1  3.6e-115  2.1e-111       2     340 ..       9     341 ..       8     344 .. 0.99

  Alignments for each domain:
  == domain 1  score: 372.2 bits;  conditional E-value: 3.6e-115
                 --SEEEEEESCCCTSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHTTTTS-EEEEE---S-EBB--BTTCSSSEEE-TTSEEEEE-SCTC CS
          PK   2 rrtkivctlGPasesvekleklieaGlnvvrlnfshGsheehqerienvreaekklgkkvaillDtkGpeirtgllkdgkkdielkegdklkvsldekl 100
                 rrtk+++tlGPa+es e++  lie+G++++r+n shG+ +  +e+ + ++e  ++lgk v++llDt+Gp irtg l d   +++lk gd +++++  + 
  CCG93375.1   9 RRTKLIATLGPATESGETIFSLIESGVDIFRFNMSHGKPDWVREKAALIQEFSRRLGKYVGMLLDTQGPAIRTGDLPD---QMQLKPGDIFTFTVRGEK 104
                 89**************************************************************************99...69************9888 PP

                 TTTBBTTEEEBS-TTHHHHS-TTEEEEETTTTEEEEEEEEETTEEEEEEESS-EEE-SS-BEE-TTS---S-SS-HHHHHHHHHHHHCT-SEEEETTE- CS
          PK 101 keegdeelialdyknivkdvevGktilvdDGllslkvlevdeekeleveventgvlgskkgvnlpgtkvdlpalsekDkadlrfgvkqgvdliaasfvr 199
                  e  d+++++++y +iv+d++ G+++lvd+G +++kv +++++  l++ev   gv++s++ +n+pg++++lp l+ kD +d+++g++ g+d+ a+sfvr
  CCG93375.1 105 VE--DQHSVSVNYDDIVNDIQLGDVVLVDNGNIKMKVISKEKNF-LRCEVLTPGVMKSRRHINIPGVRINLPPLTQKDLRDIQLGIECGMDFFALSFVR 200
                 76..69**********************************9999.****************************************************** PP

                 SHHHHHHHHHHHTCCCTTSEEEEEE-SCHHHHTHHHHHHHSSEEEEEHHHHHHHSTCCCHHHHHHHHHHHHHHHT--EEEESSTTGGGGTSSS--HHHH CS
          PK 200 kasDvkevrevleeegkeikiiakienqegvenldeileasDgimvarGDlGieipaekvllvqkklikkcnlagkpvitatqmlesmiknPrptraev 298
                 +a+D   +r++l  +g++ k++akie+q +++nl +i+  sD+im+arGDlGie p+e+++++q++++k c ++ kpvi+at++lesmi nP ptrae+
  CCG93375.1 201 EANDCDLLRQILISKGSSGKVVAKIEDQLAIKNLFQIIDSSDAIMIARGDLGIECPFEELPIIQRRIVKSCIQKRKPVIVATHLLESMIMNPVPTRAEI 299
                 *************************************************************************************************** PP

                 HHHHHHHHHT-SEEEESHHHHTSS-HHHHHHHHHHHHHHHHH CS
          PK 299 sDvanavlDGtDavmLsgetakGkyPveavkamaevaleaek 340
                 +D+anav + +D++mLsgeta G+yPve +k++ +va+++ek
  CCG93375.1 300 TDIANAVYEQADCLMLSGETASGRYPVECIKILDRVAVRTEK 341
                 ****************************************98 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   8.1e-19   4.8e-15       1     106 [.     358     460 ..     358     466 .. 0.91

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 8.1e-19
                 HHHHHHHHHHHHHHT-SEEEEE-SSSHHHHHHHHT-TS.SEEEEEESHHHHHHHHHHCTTEEHHH.HHHHH...TTSHHHHHHHHHHHTTSS-STSEEE CS
        PK_C   1 eaiakaaveaaeelgakaIvvltesGetArliskyrpk.vpiiavtpneltarqlalyrGvypvlvekaktaestdellreavkvakeaglvkkgdevv 98 
                 e++ak av++a ++ga aI+v+t+ G  A li+ +rp+   i+a++p+e+++r+l+l  Gv p +v      +s +e ++ + k +k +g +++g+++v
  CCG93375.1 358 EKLAKTAVHLADDVGAPAICVFTRFGFLASLIAGLRPRySVIYAFCPDEEVCRKLTLNYGVEPCYVVF---PKSQEESIELVEKFLKTKG-IESGQKIV 452
                 6789**********************************88889*********************9986...5678888999999999999.7******* PP

                 EEE-SSSS CS
        PK_C  99 vtaGtpkg 106
                 +++ +p +
  CCG93375.1 453 LISEVPLK 460
                 **999865 PP

>> FAO_M  FAD dependent oxidoreductase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     6e-05      0.36       9      31 ..      33      55 ..      31      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6e-05
       FAO_M  9 wevDirRFgdlhnnreylrerva 31
                ++vDi RF   h+ ++++re++a
  CCG93375.1 33 SGVDIFRFNMSHGKPDWVREKAA 55
                589*****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3265.69
//
Query:       CCG93376.1  [L=283]
Description: Short-chain dehydrogenase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-46  158.5   0.0    1.5e-46  158.3   0.0    1.1  1  adh_short        short chain dehydrogenase
    3.4e-26   92.3   0.0    4.1e-26   92.0   0.0    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    2.1e-10   40.8   0.0    2.8e-10   40.4   0.0    1.1  1  KR               KR domain
     0.0007   18.8   0.0    0.00088   18.5   0.0    1.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.3   0.0   3.4e-50   1.5e-46       2     192 ..       8     200 ..       7     203 .. 0.98

  Alignments for each domain:
  == domain 1  score: 158.3 bits;  conditional E-value: 3.4e-50
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 ++lvtGassG+G ++a++la+e  ++++++r++e+l+++ +el+++    +++ i++D++ ++  e l ++ +++  ++d+L+nNAG    gpf+e   
  CCG93376.1   8 TALVTGASSGLGSEFARQLAQEVSQLLITSRRAERLHALTEELQKQspHIRVFSIPADLSCQKGREILTDWLAAEKTEVDILINNAGCGDYGPFEECPF 106
                 69********************************************8878899********************************************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                 e++++++e+N++++  ltr+vlp mlk+++G I+n++S++g++p++  aaYs sK  v++++++l+ e++ +g++ +++aPG+++T++ +++++
  CCG93376.1 107 ERVRSLLELNIVSLTYLTRLVLPDMLKKKRGIIINIGSIVGRKPLPTCAAYSGSKSYVHAFSEALRWEIEGSGVTLTVIAPGPLETEFFMKASR 200
                 ***************************************************************************************9998875 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   9.1e-30   4.1e-26       1     182 [.      13     198 ..      13     223 .. 0.94

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 9.1e-30
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93 
                   Ga sg+G + A++la+e  ++++t ++ e+ ++ +eel+++ ++  v  +++D + ++  e l + ++++  ++Dil+nnag  +   gpf+e++ e
    CCG93376.1  13 GASSGLGSEFARQLAQEVSQLLITSRRAERlHALTEELQKQSPHIrVfsIPADLSCQKGREILTDWLAAEKTEVDILINNAGCGDY--GPFEECPFE 107
                   899************************9999999999999988655569*************************************..********* PP

                   HHHHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGS CS
  adh_short_C2  94 efdraldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgi 182
                    ++  l+ n+ sl++l++ +lp ++k++ g i+n+ s+ +++ +p  +ay+ +K  ++a++ +l  e+   g++  +++pgp++T+   ++
    CCG93376.1 108 RVRSLLELNIVSLTYLTRLVLPdMLKKKrGIIINIGSIVGRKPLPTCAAYSGSKSYVHAFSEALRWEIEGSGVTLTVIAPGPLETEFFMKA 198
                   **********************9777777********************************************************985444 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   6.3e-14   2.8e-10       2     164 ..       8     172 ..       7     188 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 6.3e-14
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT..T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal..gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklle 98 
                 t l+tG+  gLG e+ar+la++  ++l+++sR+a   e+ +al++el+++   ++v  ++aD+s ++  e l + + ae+ ++   i+ Ag  + +++e
  CCG93376.1   8 TALVTGASSGLGSEFARQLAQEV-SQLLITSRRA---ERLHALTEELQKQspHIRVFSIPADLSCQKGREILTDWLAAEKTEVDILINNAGCGDYGPFE 102
                 579*****************985.67999****3...455669999999944556666889************************************** PP

                 T--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHH CS
          KR  99 emtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrr 164
                 e+  e+++++l+  +  +  L +l+ +    ++  +++ + Si g    ++ a+Y+   ++++a+ e  r
  CCG93376.1 103 ECPFERVRSLLELNIVSLTYLTRLVLPdmlkKKRGIIINIGSIVGRKPLPTCAAYSGSKSYVHAFSEALR 172
                 ***********************9987566677789999******999**************99998765 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     2e-07   0.00088       2      95 ..      10     103 ..       9     125 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2e-07
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--T.T-HHHHHHHT..T..T-SEEEE------HHH CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdv.rdkerlekal..eelkvdvvfhaAAlKhVPl 92 
                      lvtGa+  +Gse+ rq++ ++++++++ +r   +l+++++el+++  +  ++v+ +p   ++ + +e l+++l  e+++vd++++ A       
       CCG93376.1  10 LVTGASSGLGSEFARQLA-QEVSQLLITSRRAERLHALTEELQKQSPH--IRVFSIPADLSCqKGREILTDWLaaEKTEVDILINNAGCGDYGP 100
                      8**************986.57999******************877766..65565555444404566666655224566777777776655555 PP

                      HHH CS
  Polysacc_synt_2  93 vee 95 
                       ee
       CCG93376.1 101 FEE 103
                      555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2014.59
//
Query:       CCG93377.1  [L=247]
Description: Alpha/beta superfamily hydrolase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-20   73.6   0.0    3.3e-10   39.6   0.0    2.1  2  Hydrolase_4    Serine aminopeptidase, S33
    1.1e-09   39.2   0.3    1.8e-07   32.0   0.3    2.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    4.1e-08   33.2   0.1    0.00014   21.6   0.1    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
      2e-06   27.6   0.0      0.028   14.0   0.0    2.3  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
      4e-06   26.6   0.0      9e-06   25.5   0.0    1.4  1  FSH1           Serine hydrolase (FSH1)
     0.0002   20.9   0.0    0.00028   20.4   0.0    1.2  1  Peptidase_S9   Prolyl oligopeptidase family
     0.0021   16.8   0.0     0.0043   15.8   0.0    1.4  2  AXE1           Acetyl xylan esterase (AXE1)
     0.0057   16.5   0.1      0.015   15.1   0.1    1.7  1  Lipase_3       Lipase (class 3)
     0.0078   16.0   0.0       0.27   11.0   0.0    2.4  3  Abhydrolase_5  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.029   14.3   0.0      0.056   13.4   0.0    1.5  1  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
       0.15   11.7   0.0       0.22   11.2   0.0    1.2  1  Esterase       Putative esterase


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0     2e-13   3.3e-10       3     111 ..      28     132 ..      26     146 .. 0.86
   2 !   32.0   0.0   4.3e-11   6.9e-08     172     232 ..     163     222 ..     157     225 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 2e-13
  Hydrolase_4   3 pkavvvlvHGlaehsgr..yaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllryp 98 
                  +  +v+++HG++ h +r    el ++La++G++ + +   GhG+segk  +++++++ v Dl+++++ +     + +   +GhS+G+++ +l++ + p
   CCG93377.1  28 NNTLVIIAHGITAHKDRpmLVELSNQLAKNGIHSLRFSFSGHGKSEGKFEEFTPTKE-VGDLQSVIDSLP----GWRYGYVGHSLGAAVGVLFASKDP 120
                  5678************954568****************************9999887.79*****98887....5566679***************** PP

  Hydrolase_4  99 dkvaglilsaPal 111
                  + ++ li  a + 
   CCG93377.1 121 R-ISFLISLAGMA 132
                  *.88888777764 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 4.3e-11
  Hydrolase_4 172 lllelldamkrleeraakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyH 232
                   l e ++ +++++e a+ki++P l++hG aD vv+p++sr+l++ ++   k+l  +pg+ H
   CCG93377.1 163 ALIEDMNRIDNVKEAAKKIRVPWLFIHGLADDVVPPQDSRDLFAIASE-PKKLIEIPGCDH 222
                  567788999**********************************99885.999******999 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.3   1.1e-10   1.8e-07       1     216 [.      32     235 ..      32     239 .. 0.65

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1.1e-10
                    EEEE--GC.....GCHHHH.HHHHCCTCEEEEE--TTSTS-GGCS--HHH...CHHHHHHHCCTT..TTSEEE.EEETCHHHHHHHHHHCC..EEE CS
  Abhydrolase_6   1 vlllHGagssassWlvapL.aallaagvhvlapDlpGhGrsdpppldled...ladlaalldelaagggpvvl.vGHSlGGalalaaaplalvvgv 91 
                    v+ +HG  ++++    ++L   l+  g+h l +++ GhG s+++  ++++   + dl  ++d+l++     ++ vGHSlG+a++ ++a+  ++++ 
     CCG93377.1  32 VIIAHGITAHKDRPMLVELsNQLAKNGIHSLRFSFSGHGKSEGKFEEFTPtkeVGDLQSVIDSLPG---WRYGyVGHSLGAAVGVLFASKDPRISF 124
                    678999998877765567755555556*********************99777788899*****53...23444********88885555566665 PP

                    EES-..----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEE.CTT-C.HHHH CS
  Abhydrolase_6  92 lldppptalpagllaaalelllallallrllawlsreplprlfladedadaawrarlarlaallaglgllpaaawadlpvpllvl.ggeDp.lvpr 185
                    l++    a+ a  +a+a + +  +++ +    w++      +f       +   a   ++ + ++  +     a + ++vp+l + g +D+ + p+
     CCG93377.1 125 LISL---AGMAYTAAFAQREFGNVIPGEGC-MWDMP-----EF-------PLSKALIEDMNRIDNVKE-----AAKKIRVPWLFIhGLADDvVPPQ 199
                    5555...44444455555555555555555.55532.....22.......223333334444444333.....88888888876645445525556 PP

                    CHHCCCH..STTEEETCE...SSS...-HHHHSH.HH CS
  Abhydrolase_6 186 llerlla..qagarlpvvlpgaGH...lphleep.de 216
                      ++l a  ++ ++l +++pg++H    ph++   ++
     CCG93377.1 200 DSRDLFAiaSEPKKL-IEIPGCDHlfpPPHDAFMaEA 235
                    666666677799999.999999998666665544355 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   8.8e-08   0.00014       2     110 ..      31     134 ..      30     149 .. 0.84
   2 !    9.8   0.0   0.00034      0.55     207     251 ..     178     223 ..     149     229 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 8.8e-08
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                    +++i hG+++  d ++   l + Lak+g + + +   G+g+S+   +    +++      dl+ + d+l+  +  +vGhS+G +++  +a++ p r
     CCG93377.1  31 LVIIAHGITAHKDRPMLVELSNQLAKNGIHSLRFSFSGHGKSEGKFE----EFTPTKEVGDLQSVIDSLPGWRYGYVGHSLGAAVGVLFASKDP-R 121
                    69********888877666***********************99986....56554567788899**************************955.5 PP

                    EEEEEEESECSSC CS
  Abhydrolase_1  98 Vkalvllgaidpa 110
                    ++ l++l+++++ 
     CCG93377.1 122 ISFLISLAGMAYT 134
                    9988888884444 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00034
                    THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS.EEEEEEETCSSS CS
  Abhydrolase_1 207 lknvlaptlvisgtsDplvppkaledlaqllpk.krlvvisdagHl 251
                     k++ +p+l+i+g  D +vpp+ ++dl +  ++ k+l+ i+++ Hl
     CCG93377.1 178 AKKIRVPWLFIHGLADDVVPPQDSRDLFAIASEpKKLIEIPGCDHL 223
                    344555***************9999998776667899999999997 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0    0.0001      0.16      42     140 ..      46     136 ..      20     162 .. 0.73
   2 !   14.0   0.0   1.7e-05     0.028     217     261 ..     171     215 ..     160     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
                    CHHCCHGGGHHHHHTT-EEEEEE-TTSTTS-S---TT.TTTHHHHHHHHHHHHHHCTTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEECE-S CS
  Peptidase_S15  42 aleelelqdkvfvarGYavVvqdvrGtggSeGeftvg.dsdeaedgadvidWlakqpwsnGkVgmtGiSYlGttqllaaatgvpalkaivpeaais 136
                    +l+el+   ++++++G +++  +  G+g+SeG+f+    ++e+ d  +vid l +  w     g +G S ++ + +l a+ ++p++  ++++a+++
     CCG93377.1  46 MLVELS---NQLAKNGIHSLRFSFSGHGKSEGKFEEFtPTKEVGDLQSVIDSLPG--WRY---GYVGHSLGAAVGVLFAS-KDPRISFLISLAGMA 132
                    333333...339**********************97757899********96665..544...45567888888877777.777788888777776 PP

                    -TCC CS
  Peptidase_S15 137 dlyd 140
                      + 
     CCG93377.1 133 YTAA 136
                    5554 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.7e-05
                    TT-HHHHHCT--S-EEEEEECCSSTTC.CHHHHHHHHHCCTT-EEE CS
  Peptidase_S15 217 drnlsedadkvkapvllvgGwnDwnvk.ngaiklyealkapgvkli 261
                      n++e+a+k+++p+l+++G++D+ v  + + +l+  +++p+ kli
     CCG93377.1 171 IDNVKEAAKKIRVPWLFIHGLADDVVPpQDSRDLFAIASEPK-KLI 215
                    56888999***************9999999999**9999998.665 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   5.5e-09     9e-06     105     204 ..     101     226 ..      96     233 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 5.5e-09
        FSH1 105 GiiGFSqGaalaallaslleellkeashpslkfailvsGfkleepk....................................yeeyy.eedkiqtptLh 166
                 G +G S Gaa++ l as         ++p++ f+i ++G++ +                                       +       +ki++p L+
  CCG93377.1 101 GYVGHSLGAAVGVLFAS---------KDPRISFLISLAGMAYTAAFaqrefgnvipgegcmwdmpefplskaliedmnridnV---KeAAKKIRVPWLF 187
                 55666666666666655.........456777888888888866656677778888888888888888888887777664433...345799******* PP

        FSH1 167 vlGelDtvvdeerseaLaeafknsskvlkHpg.gHfvPn 204
                 ++G +D vv+++ s++L    ++ +k+++ pg +H +P 
  CCG93377.1 188 IHGLADDVVPPQDSRDLFAIASEPKKLIEIPGcDHLFPP 226
                 ***********************9*****9996788885 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.7e-07   0.00028      67     171 ..     101     210 ..      96     243 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.7e-07
                   EEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTSTHHHCCCC--TTT......CHHHHHHHHHH-CGGG--..---EEEEEEETT-S CS
  Peptidase_S9  67 aitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdllteeymewgnpee......neegykelspyspldnvk..aypplLlihGlaDd 155
                   +  G+S G   +g++ ++++ + + +++ ++++   ++ + +  +++   + g+ ++      +++  ++++ ++++++ +  + +p L+ihGlaDd
    CCG93377.1 101 GYVGHSLGAA-VGVLFASKDPRISFLISLAGMAYTAAFAQRE--FGNVIPGEGCMWDmpefplSKALIEDMNRIDNVKEAAkkIRVPWLFIHGLADD 194
                   5667777654.4444444666667777777777777777776..555555555555544445567777788888888776688************** PP

                   SS-THHHHHHHHHHH- CS
  Peptidase_S9 156 rvppaealklvaaLqk 171
                    vpp+ +  l+a   +
    CCG93377.1 195 VVPPQDSRDLFAIASE 210
                   ********99987665 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         2   3.3e+03     175     199 ..      99     123 ..      88     127 .. 0.81
   2 !   15.8   0.0   2.6e-06    0.0043     242     316 ..     164     242 ..     158     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2
                 EEEEEEETHHHHHHHHHHHH-SS-S CS
        AXE1 175 RvavlGasqGGalalavaalekrik 199
                 R + +G+s G a+ +  a+ ++ri 
  CCG93377.1  99 RYGYVGHSLGAAVGVLFASKDPRIS 123
                 7788999999999999998888875 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.6e-06
                 HHHHHHTT-.HHHHHCC--S-EEEEEETT-SSS-HHHHHHHHHH--SSEEEEEETT-ST...TTTHHHHHHHHHHHHHH CS
        AXE1 242 vletLsYiD.vknlAkrvkaevllsvgLeDevcpPstvfaaynkletekeikvyeefah...ealkafqedkklkflsk 316
                 ++e ++ iD vk+ Ak+++++ l++ gL D+v pP     ++   +  k++   +  +h   +   af +++++++l++
  CCG93377.1 164 LIEDMNRIDnVKEAAKKIRVPWLFIHGLADDVVPPQDSRDLFAIASEPKKLIEIPGCDHlfpPPHDAFMAEAVVNWLKE 242
                 5667777884678999**********************99999999999999999999955557888999999999986 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   9.4e-06     0.015      53      84 ..      86     117 ..      34     121 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.4e-06
                 HHHHHHHHHTT-EEEEEEEETHHHHHHHHHHH CS
    Lipase_3  53 kelkrllekypeysivvtGHSLGgalAlLaal 84 
                  +l++++++ p  +   +GHSLG+a+ +L+a 
  CCG93377.1  86 GDLQSVIDSLPGWRYGYVGHSLGAAVGVLFAS 117
                 57889999999999999*************96 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00017      0.27      47      91 ..      89     132 ..      84     146 .. 0.82
   2 ?    1.1   0.0      0.18     3e+02      18      57 ..     142     182 ..     131     211 .. 0.71
   3 ?    2.1   0.0      0.09   1.5e+02      95     140 ..     177     222 ..     168     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
  Abhydrolase_5  47 eeiikeapklekfvvgGhslGGvvasrfaaeeekiegvvflasYP 91 
                    +++i++ p+ + +   GhslG +v   fa+++ +i  ++ la   
     CCG93377.1  89 QSVIDSLPGWR-YGYVGHSLGAAVGVLFASKDPRISFLISLAGMA 132
                    78999999866.8888******************99999998644 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.18
  Abhydrolase_5  18 laeklaksGyevvlvklPlnlavlg.knkaeeiikeapkle 57 
                    +++ +  +G    + ++Pl  a++   n+++++ ++a+k++
     CCG93377.1 142 FGNVIPGEGCMWDMPEFPLSKALIEdMNRIDNVKEAAKKIR 182
                    55666667777778888888887752577777777776664 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.09
  Abhydrolase_5  95 elselskkvlsivgteDgvlnvkslekakkflpkdtkvvsieGgnh 140
                      ++  ++ l i g  D+v++ ++ +      ++  k+++i G +h
     CCG93377.1 177 AAKKIRVPWLFIHGLADDVVPPQDSRDLFAIASEPKKLIEIPGCDH 222
                    4556667899**************9999999999999999999988 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.4e-05     0.056      25     134 ..     101     201 ..      95     238 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.4e-05
                 EEEEETHHHHHHHHHHHHSSSEEEEEEES--SB--SSEEEETTE..EE----B-GGG-EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEE CS
      BAAT_C  25 gllGiSkGgelalllasflkkisavvlingsavvvegklvykdeskvlpelklsmeklkvnknglldivdvlallkeklaekalipvekakgpillvvg 123
                 g +G+S G+ +++l as+ + is++++++g a+  ++++    +  v+p  ++   ++ + +     i d+ + ++ k+a k      k++ p l++ g
  CCG93377.1 101 GYVGHSLGAAVGVLFASKDPRISFLISLAGMAYTAAFAQREFGN--VIPGEGCM-WDMPEFPLSKALIEDMNRIDNVKEAAK------KIRVPWLFIHG 190
                 789***************************99999877776666..66665553.344445555555555555555555555......88889999999 PP

                 TT-SSS-HHHH CS
      BAAT_C 124 edDknwpSkes 134
                   D ++p ++s
  CCG93377.1 191 LADDVVPPQDS 201
                 99988887665 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.22     120     215 ..     103     214 ..      88     230 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
                 EEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC..............HCHHHC....TTCCHHHCC-CCCCHCHHCHTTSEEEEEEEECTTBCCCHTS CS
    Esterase 120 aGqSmGGlgALilalkhpdrFgsvssfSpivnps..............namWgq....eekeawqendpvllakelsaslkalriyldvGtseddlgeq 200
                 +G+S+G+ + ++ a+k p   ++ +s+++++++                +mW+      +k+  +    ++++ke++++ +  + +++ G  +d +  q
  CCG93377.1 103 VGHSLGAAVGVLFASKDPRI-SFLISLAGMAYTAafaqrefgnvipgeGCMWDMpefpLSKALIEDMNRIDNVKEAAKKIRVPWLFIH-GLADDVVPPQ 199
                 8*****************76.58******************************99996556666677777777776666666666665.8888888888 PP

                 CHHHHHHHHHHHCCH CS
    Esterase 201 lsveilevlarnrel 215
                 +s + ++++++ ++l
  CCG93377.1 200 DSRDLFAIASEPKKL 214
                 888888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 1858.08
//
Query:       CCG93378.1  [L=189]
Description: deoxycytidine triphosphate deaminase [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-06   25.3   0.0    0.00038   20.2   0.0    2.1  2  dUTPase   dUTPase


Domain annotation for each model (and alignments):
>> dUTPase  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.1   0.0    0.0039        69      15      30 ..      45      60 ..      41      69 .. 0.80
   2 !   20.2   0.0   2.1e-08   0.00038      24     125 ..      83     184 ..      67     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0039
                SEEEE-SSSEEEETTE CS
     dUTPase 15 gyDlsaakdltvkpge 30
                gyDl++++++ +  + 
  CCG93378.1 45 GYDLRVSREFKIFTNV 60
                9**********99854 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 2.1e-08
                 EEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECGEEEEESSTTTESSBT CS
     dUTPase  24 ltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifariltaeleevetlkaterge 122
                 ++++p++  l  +  ++ +p+++  + l++S  a+ g+iv ++     ++G   + + n t  + k+ + + +Aq+if+++ ++    + + + ++  +
  CCG93378.1  83 CIIPPNSFALARSVEYFRIPRDVITICLGKSTYARCGIIVNVTPFEPEWEGYATLEISNTTPLPAKVYAEEGLAQVIFIQACELCSTSYADRNGKYMRQ 181
                 67888*************************************99***********************************99987777777778888777 PP

                 TXT CS
     dUTPase 123 ggf 125
                 +g+
  CCG93378.1 182 QGV 184
                 776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1466.76
//
Query:       CCG93379.1  [L=362]
Description: Radical SAM family enzyme (modular protein) [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-20   72.1   0.0    1.2e-19   71.4   0.0    1.3  1  Radical_SAM      Radical SAM superfamily
    2.9e-05   24.2   0.0    8.4e-05   22.7   0.0    1.7  1  Fer4_14          4Fe-4S single cluster domain
    0.00084   19.6   0.1     0.0023   18.2   0.1    1.7  1  Fer4_12          4Fe-4S single cluster domain
  ------ inclusion threshold ------
       0.02   14.9   0.0      0.056   13.5   0.0    1.8  1  OmdA             Bacteriocin-protection, YdeI or OmpD-Associa
       0.11   12.7   0.1        3.1    8.0   0.0    2.6  3  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0   3.2e-23   1.2e-19       1     163 [.     107     271 ..     107     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 3.2e-23
                  EEEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHH...HHHHHHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC....CCTEEEEEEECSSCHG CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpetvrregrgrslsveeileev...kelkaekg.vkevilgggepllypdfvellerlakla....vpgiritvetngtlpd 90 
                  v+++ gC+l+C fCa +      g  r+ls  ei+e+v   +++ a+ +  + v++g+gepll+++    + rl+        + +rit++t+g++p 
   CCG93379.1 107 VSTQVGCPLKCGFCASG----LFGFKRNLSCGEIVEQVllsEAI-AKERiSHIVFMGMGEPLLNYEQLIQAIRLITSSwglsISPRRITISTSGIVP- 198
                  57899************....79***************665444.666779999999*******99988888888888******************9. PP

                  HHHHHHHHHTT.-SEEEEEEBSSSHH..HHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHH CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  91 eeklerllelg.vdrvslgleaadde..kvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleel 163
                     + rl++   + r++++l+a++de    l ++nr++ ++++l+++e + +++  +++  ++++ G+nd++ e++
   CCG93379.1 199 --NILRLANESlPFRLAISLHATTDElrNKLMPINRKYPLQDLLKSCEVFCSKRKQKITLEYILIAGVNDRM-EDV 271
                  ..78888887789*************987788888******************8888*************85.554 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.4e-08   8.4e-05       7      91 ..     112     197 ..     107     215 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.4e-08
     Fer4_14   7 gCnlsCkgCd...nketwkselgkpqteelleqilkdlkkseikiqglvltG.GePLhyenkkellklvkrlkeey.pe...kkiwletngtl 91 
                 gC+l+C +C       + + + g++ ++ ll++ +    k++i  + +v++G GePL   n ++l++ ++ +  +   +    +i++ t+g +
  CCG93379.1 112 GCPLKCGFCAsglFGFKRNLSCGEIVEQVLLSEAI---AKERI--SHIVFMGmGEPL--LNYEQLIQAIRLITSSWgLSispRRITISTSGIV 197
                 9********97664444577888888888888888...44444..67**********..999*******999998853344578888888876 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   6.5e-07    0.0023      13      79 ..     111     176 ..     100     197 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.5e-07
     Fer4_12  13 sgCnlsCkgCfnketwsfksgkeftkelleeiied.lkkesiegltllG.GEPllpenaeallelvkev 79 
                  gC+l+C +C    +  fk++    + +++ ++ + ++ke+i+ ++++G GEPll  n+e+l++ ++ +
  CCG93379.1 111 VGCPLKCGFCA-SGLFGFKRNLSCGEIVEQVLLSEaIAKERISHIVFMGmGEPLL--NYEQLIQAIRLI 176
                 59*******98.777788888777777777666551568999*************..999999887765 PP

>> OmdA  Bacteriocin-protection, YdeI or OmpD-Associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.6e-05     0.056      12      41 ..       5      34 ..       2      35 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
        OmdA 12 LdadpaakaaFealtpsyrreylrwiesaK 41
                Ld+ p  ++ F++l+++++ ++l+wi + K
  CCG93379.1  5 LDQFPSEWELFDSLPEYRKTQVLDWIFKKK 34
                8889999*******************9876 PP

>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00086       3.1      73     112 ..       9      52 ..       1      59 [. 0.80
   2 ?   -2.3   0.0       1.2   4.3e+03     104     121 ..     142     159 ..     137     159 .. 0.89
   3 ?    1.5   0.0     0.081   2.9e+02      21      62 ..     262     304 ..     257     313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00086
  Isochorismatase  73 ttgaelvpelaplegdvvvd....KtrfsafagtdldeiLkelg 112
                      ++++el+++l+ + +  v+d    K+ fs f+ t+l   L+e+ 
       CCG93379.1   9 PSEWELFDSLPEYRKTQVLDwifkKKVFSFFSMTNLPLPLRERL 52 
                      68999*****999966666666659***********99999875 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
  Isochorismatase 104 ldeiLkelgiktivlaGi 121
                      l e+++++ i +iv++G+
       CCG93379.1 142 LSEAIAKERISHIVFMGM 159
                      67899999*******997 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.081
  Isochorismatase  21 eeisavveninkllkaarkagipviftrdvhe.leevkgdlde 62 
                      +++++ +e +++l+k a+ ++ +v  + +++   +++k ++++
       CCG93379.1 262 AGVNDRMEDVERLAKIAKSLKAKVNLIAYNPVlQMPWKTPNKK 304
                      67889999**************999999999955555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2658.07
//
Query:       CCG93380.1  [L=114]
Description: conserved hypothetical protein [Methylacidiphilum fumariolicum SolV]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-37  125.5   0.0    8.5e-37  125.4   0.0    1.0  1  DUF3088        Protein of unknown function (DUF3088)
  ------ inclusion threshold ------
      0.016   15.0   0.1      0.021   14.6   0.1    1.1  1  DSBA           DSBA-like thioredoxin domain
       0.15   12.4   0.0       0.21   11.9   0.0    1.2  1  Thioredoxin_8  Thioredoxin-like


Domain annotation for each model (and alignments):
>> DUF3088  Protein of unknown function (DUF3088)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   1.4e-40   8.5e-37       1     112 []       2     111 ..       2     111 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 1.4e-40
     DUF3088   1 rdkLfLLePgfedpkkpgerfyCpdcaaleGllasfPalaekldvervdfarPRkavvallgeenqslPvLvLadgaakaapvkakeaegrrfiedkkr 99 
                 +++L+LL+Pgf+d+  pg+++yCp c+ +eG+l+++P+l+++l+v++v f++PRk++++l+geenqs+Pv+++++    + p++ak+++++ f++++++
  CCG93380.1   2 QPILYLLKPGFYDG--PGDPYYCPYCMIFEGVLKTYPQLKDRLKVCYVSFEKPRKEIIDLIGEENQSCPVIIFDHPLDPSIPFQAKKYGDKFFLNEPEE 98 
                 689***********..9************************************************************999******************* PP

     DUF3088 100 IlelLaerhgfpk 112
                 I  +L++ +++p+
  CCG93380.1  99 IGLYLSKEFKIPR 111
                 *********9985 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   3.6e-06     0.021       8      38 ..      20      50 ..      19      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.6e-06
                TTBHHHHHHHHHHHHHHHHCCTEEEEEEE-S CS
        DSBA  8 vlCPyCylgkerleklaarspdvkvvlrpfe 38
                ++CPyC++++ +l+ + + ++ +kv + +fe
  CCG93380.1 20 YYCPYCMIFEGVLKTYPQLKDRLKVCYVSFE 50
                89******************77999998875 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.6e-05      0.21      11      69 ..      20      75 ..      17      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.6e-05
                   SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT CS
  Thioredoxin_8 11 swcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsvpfddk 69
                   ++cp c+ f   + + y +lk  +++++ yvs+ k ++e ++ + + ++++  + fd +
     CCG93380.1 20 YYCPYCMIFEG-VLKTYPQLK--DRLKVCYVSFEKPRKEIIDLIGEENQSCPVIIFDHP 75
                   57888887655.556789999..**********************99888888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 884.46
//
[ok]
